RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780369|ref|YP_003064782.1| Electron transfer flavoprotein alpha subunit [Candidatus Liberibacter asiaticus str. psy62] (318 letters) >1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2 Length = 307 Score = 282 bits (722), Expect = 1e-76 Identities = 137/311 (44%), Positives = 199/311 (63%), Gaps = 5/311 (1%) Query: 8 VLLLADYNQENLSEQTARIVTAAQKISHDIHVLVLGDNIENIAQQAARIQGVTQVIVAQS 67 VLLL + L+ AA K D+ VL G + + A++AA+I GV +V+VA+ Sbjct: 2 VLLLGEVTNGALNRDATAKAVAAVKALGDVTVLCAGASAKAAAEEAAKIAGVAKVLVAED 61 Query: 68 TIFRHKLAGPVSDFVVSIARDYKTIMASANAMGKDILPRVAAMLDVMQVSEVIEIISPKI 127 ++ H+LA P + +V +A DY I A A K+++PRVAA+LDVM +S+V I+ Sbjct: 62 ALYGHRLAEPTAALIVGLAGDYSHIAAPATTDAKNVMPRVAALLDVMVLSDVSAILDADT 121 Query: 128 FKRPSYTGNIIQTIETTDTYQIITIRAIAFPPAPKAEKVASIHKISAEVLEKYISNTRFI 187 F+RP Y GN IQ +++ D ++ TIR +F A + +A + ++ Sbjct: 122 FERPIYAGNAIQVVKSKDAKKVFTIRTASFDAAGEGGTAPVTETAAA----ADPGLSSWV 177 Query: 188 KEERTSLSPTDLSSAKIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPN 247 +E +L+SA+ V+SGG+ GS E+F ++ LA KLGAA+GA+R AVD+G+APN Sbjct: 178 ADEVAESDRPELTSARRVVSGGRGLGSKESF-AIIEELADKLGAAVGASRAAVDSGYAPN 236 Query: 248 DWQIGQTGVTVSPELYIAAGISGAIQHISGMKDSKVIVSINTDENAPIFKISDYFIVGDI 307 DWQ+GQTG V+PELY+A GISGAIQH++GMKDSKVIV+IN DE APIF+I+DY +VGD+ Sbjct: 237 DWQVGQTGKVVAPELYVAVGISGAIQHLAGMKDSKVIVAINKDEEAPIFQIADYGLVGDL 296 Query: 308 FKILPEIEKNL 318 F ++PE+ L Sbjct: 297 FSVVPELTGKL 307 >1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R* Length = 315 Score = 272 bits (697), Expect = 6e-74 Identities = 127/313 (40%), Positives = 201/313 (64%), Gaps = 6/313 (1%) Query: 8 VLLLADYNQENLSEQTARIVTAAQKISHDIHVLVLGDNIENIAQQAARIQGVTQVIVAQS 67 L++A++ ++L+ T +TAA ++ ++ LV G + +AQ ++ G+ +V+VAQ Sbjct: 4 TLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAGIAKVLVAQH 63 Query: 68 TIFRHKLAGPVSDFVVSIARDYK--TIMASANAMGKDILPRVAAMLDVMQVSEVIEIISP 125 +++ L ++ +++ + + I A A+A GK++LPRVAA L+V +S++I I SP Sbjct: 64 DVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPISDIIAIKSP 123 Query: 126 KIFKRPSYTGNIIQTIETTDTYQIITIRAIAFPPAPKAEKVASIHKISAEVLEKYISNTR 185 F R Y GN + T++ + ++ ++R +F A + AS K S+ + + Sbjct: 124 DTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSGGSASSEKASSTSPVEI---SE 180 Query: 186 FIKEERTSLSPTDLSSAKIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFA 245 ++ ++ T +L+ AK+V+SGG+ S ENF KLL LA +L AA+GA+R AVDAGF Sbjct: 181 WLDQKLTKSDRPELTGAKVVVSGGRGLKSGENF-KLLYDLADQLHAAVGASRAAVDAGFV 239 Query: 246 PNDWQIGQTGVTVSPELYIAAGISGAIQHISGMKDSKVIVSINTDENAPIFKISDYFIVG 305 PND Q+GQTG V+PELYIA GISGAIQH++GMKDSK IV+IN D APIF+++DY IV Sbjct: 240 PNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVADYGIVA 299 Query: 306 DIFKILPEIEKNL 318 D+FK++PE+ + L Sbjct: 300 DLFKVVPEMTEIL 312 >1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D* Length = 320 Score = 223 bits (568), Expect = 6e-59 Identities = 76/321 (23%), Positives = 144/321 (44%), Gaps = 15/321 (4%) Query: 8 VLLLADYNQENLSEQTARIVTAAQKIS----HDIHVLVLGDNIENIAQQAARIQGVTQVI 63 +L++A++ + +L + ++ AA + + V V+G + + + GV +++ Sbjct: 3 ILVIAEHRRNDLRPVSLELIGAANGLKKSGEDKVVVAVIGSQADAFVPALS-VNGVDELV 61 Query: 64 VAQSTIFRHKLAGPVSDFVVSIARDYKT-IMASANAMGKDILPRVAAMLDVMQVSEVIEI 122 V + + + IA + ++ + +A+ ++V + Sbjct: 62 VVKGSSIDFDPDVFEASVSALIAAHNPSVVLLPHSVDSLGYASSLASKTGYGFATDVYIV 121 Query: 123 ISPK---IFKRPSYTGNIIQTIETT-DTYQIITIRAIAFPPAPKAEKVASIHKISAEVLE 178 + R Y + ++ + ++TIR F P A + + A ++ Sbjct: 122 EYQGDELVATRGGYNQKVNVEVDFPGKSTVVLTIRPSVFKPLEGAGS-PVVSNVDAPSVQ 180 Query: 179 KYISNTRFIKEERTSLSPTDLSSAKIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRD 238 N + E + D+++ ++S G+ G N + LA + GA + +R Sbjct: 181 SRSQNKDY--VEVGGGNDIDITTVDFIMSIGRGIGEETN-VEQFRELADEAGATLCCSRP 237 Query: 239 AVDAGFAPNDWQIGQTGVTV-SPELYIAAGISGAIQHISGMKDSKVIVSINTDENAPIFK 297 DAG+ P Q+GQ+G V S +LY+A GISG+IQH++GMK I+++NTD A IF Sbjct: 238 IADAGWLPKSRQVGQSGKVVGSCKLYVAMGISGSIQHMAGMKHVPTIIAVNTDPGASIFT 297 Query: 298 ISDYFIVGDIFKILPEIEKNL 318 I+ Y IV DIF I E++ L Sbjct: 298 IAKYGIVADIFDIEEELKAQL 318 >3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron} Length = 217 Score = 88.3 bits (218), Expect = 2e-18 Identities = 30/205 (14%), Positives = 85/205 (41%), Gaps = 24/205 (11%) Query: 6 MPVLLLADYNQENLSEQTARIVTAAQKIS----HDIHVLVLGDNIENIAQQAARIQGVTQ 61 + + + + +++ + ++T + ++ + +V G ++ I +Q GV + Sbjct: 4 NNLFVYCEIEEGIVADVSLELLTKGRSLANELNCQLEAVVAGTGLKEIEKQILPY-GVDK 62 Query: 62 VIVAQSTIFRHKLAGPVSDFVVSIARDYKT--IMASANAMGKDILPRVAAMLDVMQVSEV 119 + V + + P + +V++ ++ + + A +G+D+ PRV++ L ++ Sbjct: 63 LHVFDAEGLYPYTSLPHTSILVNLFKEEQPQICLMGATVIGRDLGPRVSSALTSGLTADC 122 Query: 120 IEIISPK--------------IFKRPSYTGNIIQTIETTDTY-QIITIRAIAFPPAPKAE 164 + RP++ GNI+ TI + Q+ T+R + Sbjct: 123 TSLEIGDHEDKKEGKVYKNLLYQIRPAFGGNIVATIVNPEHRPQMATVREGVMKKEIVSP 182 Query: 165 KVASIHKISAEVLEKYISNTRFIKE 189 ++ ++KY+++T ++ + Sbjct: 183 AYQG--EVIRHDVKKYVADTDYVVK 205 >3fet_A Electron transfer flavoprotein subunit alpha related protein; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: MSE; 2.05A {Thermoplasma acidophilum} Length = 166 Score = 79.9 bits (197), Expect = 6e-16 Identities = 27/173 (15%), Positives = 56/173 (32%), Gaps = 23/173 (13%) Query: 6 MPVLLLADYNQENLSEQTARIVTAAQKISHDIHVLVLGDNIENIAQQAARIQGVTQVIVA 65 M L ++D R V D+ +++G + A+ G + A Sbjct: 4 MKFLTVSDDMN------FLRQVNTLVAGKGDMDSVIIG-------EGDAKGLGSKVLYRA 50 Query: 66 QSTIFRHKLAGPVSDFVVSIARDYKTIMASANAMGKDILPRVAAMLDVMQVSEVIEIIS- 124 + VS+ ++ IA +Y I + +G++I ++ +E+ + Sbjct: 51 KKGT----PFDAVSEGILKIAGNYDYIAIGSTEVGREIAGYLSFKTGFYTATEIFSLEFN 106 Query: 125 --PKIFKRPSYTGNIIQTIETTDTYQIITIRAIAFPPAPKAEKVASIHKISAE 175 KR Y G + E+ +I+T+ I + Sbjct: 107 GQKAHTKRFFYGGKTVIEEESDA--RILTVAPGVIEAKDLGTT-PEIRDLEIG 156 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 56.1 bits (135), Expect = 1e-08 Identities = 60/372 (16%), Positives = 113/372 (30%), Gaps = 152/372 (40%) Query: 9 LLLADYNQENLSEQTARIVTAAQKISHDIHVLV---LGDNIENIAQQ--------AARIQ 57 L L ++ L +DIH L L +N + + ARI Sbjct: 86 LCLTEFENCYLE-------------GNDIHALAAKLLQENDTTLVKTKELIKNYITARIM 132 Query: 58 GVTQV-IVAQSTIFRHKLAGPVSDFVV----SIARDY----KTIMASANAMGKDILPRVA 108 + S +FR G + DY + + + + + D++ A Sbjct: 133 AKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSA 192 Query: 109 AMLDVMQVSEVIEIISPKIFKRPSYTG-NIIQTIETTDT-----YQIITIRAIAFPPAPK 162 L + + + + K+F + G NI++ +E Y +++I I+ P Sbjct: 193 ETLSELIRT---TLDAEKVFTQ----GLNILEWLENPSNTPDKDY-LLSI-PISCP---- 239 Query: 163 AEKVASI------H-KISAEVLEKYISNTRFIKEERTSLSPTDLSSAKIVISG--GKSFG 213 I H ++A++L +P +L S + G G S G Sbjct: 240 -----LIGVIQLAHYVVTAKLLG---------------FTPGELRSY---LKGATGHSQG 276 Query: 214 -----------SMENFHKLLLPLAKKLGAA------IGA---------------TRDAVD 241 S E+F +K A IG D+++ Sbjct: 277 LVTAVAIAETDSWESFFV----SVRK---AITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329 Query: 242 AGFAPNDWQIGQTGVTVSPELYIAAGIS-GAIQ-HISGM-----KDSKVIVS-INTDENA 293 SP L I + ++ +Q +++ +V +S +N +N Sbjct: 330 NNEG-----------VPSPMLSI-SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN- 376 Query: 294 PIFKISDYFIVG 305 +V Sbjct: 377 --------LVVS 380 Score = 31.1 bits (70), Expect = 0.31 Identities = 35/163 (21%), Positives = 62/163 (38%), Gaps = 43/163 (26%) Query: 88 DYKT---IMASANAMGKDI--LPRVAAMLDVMQVSEVIEIISPKIFKRPSYTGNIIQTIE 142 D K+ I A A G + +A++ DVM + ++E+ +F Y G +Q Sbjct: 1746 DLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEV----VF----YRGMTMQVAV 1797 Query: 143 TTD-----TYQIITIR----AIAFPPAPKAEKVASIHKISA---EVLEKYISNTRFIKEE 190 D Y +I I A +F V + K + E++ + N +++ Sbjct: 1798 PRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYV--- 1854 Query: 191 RTSLSPTDLSSAKIVISGGKSFGSMENFHKL----LLPLAKKL 229 + DL + V ++ NF KL ++ L K L Sbjct: 1855 ----AAGDLRALDTVT-------NVLNFIKLQKIDIIELQKSL 1886 Score = 29.9 bits (67), Expect = 0.88 Identities = 26/144 (18%), Positives = 45/144 (31%), Gaps = 53/144 (36%) Query: 192 TSLSPTDLSSAKIVISGGKSFGSMENFHKLLLP-----LAKKLGAAIGATRDAVDAGFAP 246 S P LS GS+E H LL+P +A +L GFA Sbjct: 4 YSTRPLTLSH-----------GSLE--HVLLVPTASFFIASQLQEQFNKILPEPTEGFAA 50 Query: 247 NDWQIGQTGVTVSP-EL------YIAAGI--SGAIQHISGMK------DSK--------- 282 +D +P EL Y+++ + S Q + ++ Sbjct: 51 DD-------EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA 103 Query: 283 VIVSINTDENAPIFK----ISDYF 302 + + + + + K I +Y Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYI 127 Score = 27.2 bits (60), Expect = 5.7 Identities = 11/71 (15%), Positives = 18/71 (25%), Gaps = 26/71 (36%) Query: 57 QGVTQVI----VAQSTIFR-HKLAGPV------SDFVVSIARDYKTIMASANAMGKDILP 105 + +I V + F + PV SD R I Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL-----RVL----------SGSISE 477 Query: 106 RVAAMLDVMQV 116 R+ + + V Sbjct: 478 RIVDCIIRLPV 488 >1e9y_A Urease alpha subunit; hydrolase, dodecamer, acetohydroxamic acid; HET: KCX; 3.0A {Helicobacter pylori} SCOP: b.85.3.1 d.8.1.1 PDB: 1e9z_A* Length = 238 Score = 30.4 bits (69), Expect = 0.60 Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 6/45 (13%) Query: 78 VSDFVVSIARDYKTIMASANAMGK------DILPRVAAMLDVMQV 116 +S ++ AR K A G+ D++ VA+M+ + + Sbjct: 39 ISAHIMEEARAGKKTAAELMQEGRTLLKPDDVMDGVASMIHEVGI 83 >2fvh_A Urease gamma subunit; protein: UREA homolog, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} Length = 120 Score = 29.6 bits (67), Expect = 0.85 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 7/45 (15%) Query: 78 VSDFVVSIARDYKTIMASANAMGKDILPR------VAAMLDVMQV 116 ++D ++ ARD +T +A A G+++L R V ML +QV Sbjct: 59 IADHILEGARDGRT-VAELMASGREVLGRDDVMEGVPEMLAEVQV 102 >4ubp_A Protein (urease (chain A)); nickel, acetohydroxamic acid, metalloenzyme; HET: KCX; 1.55A {Bacillus pasteurii} SCOP: d.8.1.1 PDB: 1s3t_A* 2ubp_A* 3ubp_A* 1ie7_A* 1ubp_A* 1ejx_A* 1a5l_A 1a5k_A 1a5n_A 1a5o_A 1ef2_C* 1ejr_A* 1ejs_A* 1ejt_A* 1eju_A* 1ejv_A* 1a5m_A* 1ejw_A* 1fwa_A* 1fwb_A* ... Length = 100 Score = 29.1 bits (66), Expect = 1.2 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 7/45 (15%) Query: 78 VSDFVVSIARDYKTIMASANAMGKDILPR------VAAMLDVMQV 116 ++ F++ ARD KT +A GK +L R V M+D +Q Sbjct: 39 ITSFIMEGARDGKT-VAMLMEEGKHVLTRDDVMEGVPEMIDDIQA 82 >3ou8_A Adenosine deaminase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.51A {Pseudomonas aeruginosa} Length = 326 Score = 28.9 bits (64), Expect = 1.5 Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 6/81 (7%) Query: 233 IGATRDAVDAGFAPNDWQIGQTGVTVSPELYIAAGISGAIQ--HISGMKDSKVIVSINTD 290 I A + Q +TV P + + I M + V V++N+D Sbjct: 218 IDHGVRAFEDERLMRRLIDEQIPLTVCPLSNTKLCVFDDMSQHTILDMLERGVKVTVNSD 277 Query: 291 ENAPIFKIS---DYFIVGDIF 308 + F ++ + Sbjct: 278 -DPAYFGGYVTENFHALQQSL 297 >2pgf_A Adenosine deaminase; metallo-dependent hydrolase, structural genomics, medical structural genomics of pathogenic protozoa consortium, MSGPP; HET: MSE ADN; 1.89A {Plasmodium vivax} PDB: 2pgr_A* 2qvn_A* 2amx_A Length = 371 Score = 28.6 bits (63), Expect = 2.1 Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 7/88 (7%) Query: 229 LGA-AIGATRDAVDAGFAPNDWQIGQTGVTVSP--ELYIAAGISGAIQHISGMKDSKVIV 285 L IG ++ + + + V P + + S I + D+ V V Sbjct: 254 LKVERIGHGIRVAESQELIDMVKEKNILLEVCPISNVLLKNAKSMDTHPIRQLYDAGVKV 313 Query: 286 SINTDENAPIFKIS---DYFIVGDIFKI 310 S+N+D + +F + DY + Sbjct: 314 SVNSD-DPGMFLTNINDDYEELYTHLNF 340 >1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A* Length = 249 Score = 28.1 bits (62), Expect = 2.7 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 8/65 (12%) Query: 260 PELYIAAGISGAIQHISGM------KDSKVIVSINTDENAPIFKISDYFIVGDIFKILPE 313 ++ I AG S +Q + + + +I IN DE P+ I+DY + G +++ E Sbjct: 178 ADVIIVAGTSAVVQPAASLPLIVKQRGGAIIE-INPDE-TPLTPIADYSLRGKAGEVMDE 235 Query: 314 IEKNL 318 + +++ Sbjct: 236 LVRHV 240 >3lu0_C DNA-directed RNA polymerase subunit beta; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_C* Length = 1342 Score = 27.6 bits (61), Expect = 3.3 Identities = 29/141 (20%), Positives = 48/141 (34%), Gaps = 13/141 (9%) Query: 185 RFIKEERTSLSPTDLSSAKIVISGGKSF---GSMENFHKLLLPLA-----KKLGAAIGAT 236 R + +L P D+ +AK + + K F + F PL+ +++ A Sbjct: 478 RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMVQNNPLSEITHKRRISALGPGG 537 Query: 237 RDAVDAGFAPNDWQIGQTGVTVSPELYIAAGISGAIQHISGMKDSKVIVSINTDENAPIF 296 AGF D G E I G I +S + + T P Sbjct: 538 LTRERAGFEVRDVHPTHYGRVCPIETPEGPNI-GLINSLSVYAQTNEYGFLET----PYR 592 Query: 297 KISDYFIVGDIFKILPEIEKN 317 K++D + +I + E N Sbjct: 593 KVTDGVVTDEIHYLSAIEEGN 613 >1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A* Length = 253 Score = 27.4 bits (60), Expect = 4.8 Identities = 13/79 (16%), Positives = 30/79 (37%), Gaps = 8/79 (10%) Query: 246 PNDWQIGQTGVTVSPELYIAAGISGAIQHISGM------KDSKVIVSINTDENAPIFKIS 299 P + ++ G S + + + +K+I+ +N + I Sbjct: 170 PQRTLFEAIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMII-VNAEPT-MADPIF 227 Query: 300 DYFIVGDIFKILPEIEKNL 318 D I+G ++LP+I + + Sbjct: 228 DVKIIGKAGEVLPKIVEEV 246 >1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 2h4h_A* 3jr3_A* 2h59_A* Length = 246 Score = 26.7 bits (58), Expect = 6.7 Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 6/78 (7%) Query: 246 PNDWQIGQTGVTVSPELYIAAGISGAIQHISGM-----KDSKVIVSINTDENAPIFKISD 300 P D G++ L I G S + + + + +V +N E P I+ Sbjct: 167 PQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGE-TPFDDIAT 225 Query: 301 YFIVGDIFKILPEIEKNL 318 D+ + + + Sbjct: 226 LKYNMDVVEFARRVMEEG 243 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 26.5 bits (57), Expect = 8.1 Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 4/24 (16%) Query: 277 GMKDSKVIVSIN--TDENAPIFKI 298 +K K+ S+ D++AP I Sbjct: 21 ALK--KLQASLKLYADDSAPALAI 42 >3iyd_C DNA-directed RNA polymerase subunit beta; transcription, initiation, class I, activator, RNA polymerase, holoenzyme, sigma70, open complex, CAP, CRP, CAMP-dependent; HET: DNA CMP; 19.80A {Escherichia coli k-12} Length = 1342 Score = 26.6 bits (58), Expect = 8.5 Identities = 27/144 (18%), Positives = 48/144 (33%), Gaps = 19/144 (13%) Query: 185 RFIKEERTSLSPTDLSSAKIVISGGKSFGSMENFHKLL---LPLA-----KKLGAAIGAT 236 R + +L P D+ +AK + + K F + + PL+ +++ A Sbjct: 478 RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGG 537 Query: 237 RDAVDAGFAPND---WQIGQTGVTVSPELYIAAGISGAIQHISGMKDSKVIVSINTDENA 293 AGF D G+ +PE G I +S + Sbjct: 538 LTRERAGFEVRDVHPTHYGRVCPIETPE----GPNIGLINSLSVY----AQTNEYGFLET 589 Query: 294 PIFKISDYFIVGDIFKILPEIEKN 317 P K++D + +I + E N Sbjct: 590 PYRKVTDGVVTDEIHYLSAIEEGN 613 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.318 0.133 0.367 Gapped Lambda K H 0.267 0.0758 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,606,934 Number of extensions: 119468 Number of successful extensions: 442 Number of sequences better than 10.0: 1 Number of HSP's gapped: 425 Number of HSP's successfully gapped: 25 Length of query: 318 Length of database: 5,693,230 Length adjustment: 92 Effective length of query: 226 Effective length of database: 3,462,782 Effective search space: 782588732 Effective search space used: 782588732 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 57 (25.7 bits)