RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780369|ref|YP_003064782.1| Electron transfer flavoprotein
alpha subunit [Candidatus Liberibacter asiaticus str. psy62]
(318 letters)
>1efp_A ETF, protein (electron transfer flavoprotein); electron transport,
glutaric acidemia type II; HET: FAD AMP; 2.60A
{Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2
Length = 307
Score = 282 bits (722), Expect = 1e-76
Identities = 137/311 (44%), Positives = 199/311 (63%), Gaps = 5/311 (1%)
Query: 8 VLLLADYNQENLSEQTARIVTAAQKISHDIHVLVLGDNIENIAQQAARIQGVTQVIVAQS 67
VLLL + L+ AA K D+ VL G + + A++AA+I GV +V+VA+
Sbjct: 2 VLLLGEVTNGALNRDATAKAVAAVKALGDVTVLCAGASAKAAAEEAAKIAGVAKVLVAED 61
Query: 68 TIFRHKLAGPVSDFVVSIARDYKTIMASANAMGKDILPRVAAMLDVMQVSEVIEIISPKI 127
++ H+LA P + +V +A DY I A A K+++PRVAA+LDVM +S+V I+
Sbjct: 62 ALYGHRLAEPTAALIVGLAGDYSHIAAPATTDAKNVMPRVAALLDVMVLSDVSAILDADT 121
Query: 128 FKRPSYTGNIIQTIETTDTYQIITIRAIAFPPAPKAEKVASIHKISAEVLEKYISNTRFI 187
F+RP Y GN IQ +++ D ++ TIR +F A + +A + ++
Sbjct: 122 FERPIYAGNAIQVVKSKDAKKVFTIRTASFDAAGEGGTAPVTETAAA----ADPGLSSWV 177
Query: 188 KEERTSLSPTDLSSAKIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPN 247
+E +L+SA+ V+SGG+ GS E+F ++ LA KLGAA+GA+R AVD+G+APN
Sbjct: 178 ADEVAESDRPELTSARRVVSGGRGLGSKESF-AIIEELADKLGAAVGASRAAVDSGYAPN 236
Query: 248 DWQIGQTGVTVSPELYIAAGISGAIQHISGMKDSKVIVSINTDENAPIFKISDYFIVGDI 307
DWQ+GQTG V+PELY+A GISGAIQH++GMKDSKVIV+IN DE APIF+I+DY +VGD+
Sbjct: 237 DWQVGQTGKVVAPELYVAVGISGAIQHLAGMKDSKVIVAINKDEEAPIFQIADYGLVGDL 296
Query: 308 FKILPEIEKNL 318
F ++PE+ L
Sbjct: 297 FSVVPELTGKL 307
>1efv_A Electron transfer flavoprotein; electron transport, glutaric
acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens}
SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Length = 315
Score = 272 bits (697), Expect = 6e-74
Identities = 127/313 (40%), Positives = 201/313 (64%), Gaps = 6/313 (1%)
Query: 8 VLLLADYNQENLSEQTARIVTAAQKISHDIHVLVLGDNIENIAQQAARIQGVTQVIVAQS 67
L++A++ ++L+ T +TAA ++ ++ LV G + +AQ ++ G+ +V+VAQ
Sbjct: 4 TLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAGIAKVLVAQH 63
Query: 68 TIFRHKLAGPVSDFVVSIARDYK--TIMASANAMGKDILPRVAAMLDVMQVSEVIEIISP 125
+++ L ++ +++ + + I A A+A GK++LPRVAA L+V +S++I I SP
Sbjct: 64 DVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPISDIIAIKSP 123
Query: 126 KIFKRPSYTGNIIQTIETTDTYQIITIRAIAFPPAPKAEKVASIHKISAEVLEKYISNTR 185
F R Y GN + T++ + ++ ++R +F A + AS K S+ + +
Sbjct: 124 DTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSGGSASSEKASSTSPVEI---SE 180
Query: 186 FIKEERTSLSPTDLSSAKIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFA 245
++ ++ T +L+ AK+V+SGG+ S ENF KLL LA +L AA+GA+R AVDAGF
Sbjct: 181 WLDQKLTKSDRPELTGAKVVVSGGRGLKSGENF-KLLYDLADQLHAAVGASRAAVDAGFV 239
Query: 246 PNDWQIGQTGVTVSPELYIAAGISGAIQHISGMKDSKVIVSINTDENAPIFKISDYFIVG 305
PND Q+GQTG V+PELYIA GISGAIQH++GMKDSK IV+IN D APIF+++DY IV
Sbjct: 240 PNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVADYGIVA 299
Query: 306 DIFKILPEIEKNL 318
D+FK++PE+ + L
Sbjct: 300 DLFKVVPEMTEIL 312
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET:
AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP:
c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D*
3clt_D* 3clr_D* 3cls_D*
Length = 320
Score = 223 bits (568), Expect = 6e-59
Identities = 76/321 (23%), Positives = 144/321 (44%), Gaps = 15/321 (4%)
Query: 8 VLLLADYNQENLSEQTARIVTAAQKIS----HDIHVLVLGDNIENIAQQAARIQGVTQVI 63
+L++A++ + +L + ++ AA + + V V+G + + + GV +++
Sbjct: 3 ILVIAEHRRNDLRPVSLELIGAANGLKKSGEDKVVVAVIGSQADAFVPALS-VNGVDELV 61
Query: 64 VAQSTIFRHKLAGPVSDFVVSIARDYKT-IMASANAMGKDILPRVAAMLDVMQVSEVIEI 122
V + + + IA + ++ + +A+ ++V +
Sbjct: 62 VVKGSSIDFDPDVFEASVSALIAAHNPSVVLLPHSVDSLGYASSLASKTGYGFATDVYIV 121
Query: 123 ISPK---IFKRPSYTGNIIQTIETT-DTYQIITIRAIAFPPAPKAEKVASIHKISAEVLE 178
+ R Y + ++ + ++TIR F P A + + A ++
Sbjct: 122 EYQGDELVATRGGYNQKVNVEVDFPGKSTVVLTIRPSVFKPLEGAGS-PVVSNVDAPSVQ 180
Query: 179 KYISNTRFIKEERTSLSPTDLSSAKIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRD 238
N + E + D+++ ++S G+ G N + LA + GA + +R
Sbjct: 181 SRSQNKDY--VEVGGGNDIDITTVDFIMSIGRGIGEETN-VEQFRELADEAGATLCCSRP 237
Query: 239 AVDAGFAPNDWQIGQTGVTV-SPELYIAAGISGAIQHISGMKDSKVIVSINTDENAPIFK 297
DAG+ P Q+GQ+G V S +LY+A GISG+IQH++GMK I+++NTD A IF
Sbjct: 238 IADAGWLPKSRQVGQSGKVVGSCKLYVAMGISGSIQHMAGMKHVPTIIAVNTDPGASIFT 297
Query: 298 ISDYFIVGDIFKILPEIEKNL 318
I+ Y IV DIF I E++ L
Sbjct: 298 IAKYGIVADIFDIEEELKAQL 318
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha
sandwich, structural genomics, PSI-2, protein structure
initiative; 2.60A {Bacteroides thetaiotaomicron}
Length = 217
Score = 88.3 bits (218), Expect = 2e-18
Identities = 30/205 (14%), Positives = 85/205 (41%), Gaps = 24/205 (11%)
Query: 6 MPVLLLADYNQENLSEQTARIVTAAQKIS----HDIHVLVLGDNIENIAQQAARIQGVTQ 61
+ + + + +++ + ++T + ++ + +V G ++ I +Q GV +
Sbjct: 4 NNLFVYCEIEEGIVADVSLELLTKGRSLANELNCQLEAVVAGTGLKEIEKQILPY-GVDK 62
Query: 62 VIVAQSTIFRHKLAGPVSDFVVSIARDYKT--IMASANAMGKDILPRVAAMLDVMQVSEV 119
+ V + + P + +V++ ++ + + A +G+D+ PRV++ L ++
Sbjct: 63 LHVFDAEGLYPYTSLPHTSILVNLFKEEQPQICLMGATVIGRDLGPRVSSALTSGLTADC 122
Query: 120 IEIISPK--------------IFKRPSYTGNIIQTIETTDTY-QIITIRAIAFPPAPKAE 164
+ RP++ GNI+ TI + Q+ T+R +
Sbjct: 123 TSLEIGDHEDKKEGKVYKNLLYQIRPAFGGNIVATIVNPEHRPQMATVREGVMKKEIVSP 182
Query: 165 KVASIHKISAEVLEKYISNTRFIKE 189
++ ++KY+++T ++ +
Sbjct: 183 AYQG--EVIRHDVKKYVADTDYVVK 205
>3fet_A Electron transfer flavoprotein subunit alpha related protein;
alpha-beta-alpha sandwich, structural genomics, PSI-2;
HET: MSE; 2.05A {Thermoplasma acidophilum}
Length = 166
Score = 79.9 bits (197), Expect = 6e-16
Identities = 27/173 (15%), Positives = 56/173 (32%), Gaps = 23/173 (13%)
Query: 6 MPVLLLADYNQENLSEQTARIVTAAQKISHDIHVLVLGDNIENIAQQAARIQGVTQVIVA 65
M L ++D R V D+ +++G + A+ G + A
Sbjct: 4 MKFLTVSDDMN------FLRQVNTLVAGKGDMDSVIIG-------EGDAKGLGSKVLYRA 50
Query: 66 QSTIFRHKLAGPVSDFVVSIARDYKTIMASANAMGKDILPRVAAMLDVMQVSEVIEIIS- 124
+ VS+ ++ IA +Y I + +G++I ++ +E+ +
Sbjct: 51 KKGT----PFDAVSEGILKIAGNYDYIAIGSTEVGREIAGYLSFKTGFYTATEIFSLEFN 106
Query: 125 --PKIFKRPSYTGNIIQTIETTDTYQIITIRAIAFPPAPKAEKVASIHKISAE 175
KR Y G + E+ +I+T+ I +
Sbjct: 107 GQKAHTKRFFYGGKTVIEEESDA--RILTVAPGVIEAKDLGTT-PEIRDLEIG 156
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 56.1 bits (135), Expect = 1e-08
Identities = 60/372 (16%), Positives = 113/372 (30%), Gaps = 152/372 (40%)
Query: 9 LLLADYNQENLSEQTARIVTAAQKISHDIHVLV---LGDNIENIAQQ--------AARIQ 57
L L ++ L +DIH L L +N + + ARI
Sbjct: 86 LCLTEFENCYLE-------------GNDIHALAAKLLQENDTTLVKTKELIKNYITARIM 132
Query: 58 GVTQV-IVAQSTIFRHKLAGPVSDFVV----SIARDY----KTIMASANAMGKDILPRVA 108
+ S +FR G + DY + + + + + D++ A
Sbjct: 133 AKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSA 192
Query: 109 AMLDVMQVSEVIEIISPKIFKRPSYTG-NIIQTIETTDT-----YQIITIRAIAFPPAPK 162
L + + + + K+F + G NI++ +E Y +++I I+ P
Sbjct: 193 ETLSELIRT---TLDAEKVFTQ----GLNILEWLENPSNTPDKDY-LLSI-PISCP---- 239
Query: 163 AEKVASI------H-KISAEVLEKYISNTRFIKEERTSLSPTDLSSAKIVISG--GKSFG 213
I H ++A++L +P +L S + G G S G
Sbjct: 240 -----LIGVIQLAHYVVTAKLLG---------------FTPGELRSY---LKGATGHSQG 276
Query: 214 -----------SMENFHKLLLPLAKKLGAA------IGA---------------TRDAVD 241
S E+F +K A IG D+++
Sbjct: 277 LVTAVAIAETDSWESFFV----SVRK---AITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 242 AGFAPNDWQIGQTGVTVSPELYIAAGIS-GAIQ-HISGM-----KDSKVIVS-INTDENA 293
SP L I + ++ +Q +++ +V +S +N +N
Sbjct: 330 NNEG-----------VPSPMLSI-SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN- 376
Query: 294 PIFKISDYFIVG 305
+V
Sbjct: 377 --------LVVS 380
Score = 31.1 bits (70), Expect = 0.31
Identities = 35/163 (21%), Positives = 62/163 (38%), Gaps = 43/163 (26%)
Query: 88 DYKT---IMASANAMGKDI--LPRVAAMLDVMQVSEVIEIISPKIFKRPSYTGNIIQTIE 142
D K+ I A A G + +A++ DVM + ++E+ +F Y G +Q
Sbjct: 1746 DLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEV----VF----YRGMTMQVAV 1797
Query: 143 TTD-----TYQIITIR----AIAFPPAPKAEKVASIHKISA---EVLEKYISNTRFIKEE 190
D Y +I I A +F V + K + E++ + N +++
Sbjct: 1798 PRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYV--- 1854
Query: 191 RTSLSPTDLSSAKIVISGGKSFGSMENFHKL----LLPLAKKL 229
+ DL + V ++ NF KL ++ L K L
Sbjct: 1855 ----AAGDLRALDTVT-------NVLNFIKLQKIDIIELQKSL 1886
Score = 29.9 bits (67), Expect = 0.88
Identities = 26/144 (18%), Positives = 45/144 (31%), Gaps = 53/144 (36%)
Query: 192 TSLSPTDLSSAKIVISGGKSFGSMENFHKLLLP-----LAKKLGAAIGATRDAVDAGFAP 246
S P LS GS+E H LL+P +A +L GFA
Sbjct: 4 YSTRPLTLSH-----------GSLE--HVLLVPTASFFIASQLQEQFNKILPEPTEGFAA 50
Query: 247 NDWQIGQTGVTVSP-EL------YIAAGI--SGAIQHISGMK------DSK--------- 282
+D +P EL Y+++ + S Q + ++
Sbjct: 51 DD-------EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA 103
Query: 283 VIVSINTDENAPIFK----ISDYF 302
+ + + + + K I +Y
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYI 127
Score = 27.2 bits (60), Expect = 5.7
Identities = 11/71 (15%), Positives = 18/71 (25%), Gaps = 26/71 (36%)
Query: 57 QGVTQVI----VAQSTIFR-HKLAGPV------SDFVVSIARDYKTIMASANAMGKDILP 105
+ +I V + F + PV SD R I
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL-----RVL----------SGSISE 477
Query: 106 RVAAMLDVMQV 116
R+ + + V
Sbjct: 478 RIVDCIIRLPV 488
>1e9y_A Urease alpha subunit; hydrolase, dodecamer, acetohydroxamic acid;
HET: KCX; 3.0A {Helicobacter pylori} SCOP: b.85.3.1
d.8.1.1 PDB: 1e9z_A*
Length = 238
Score = 30.4 bits (69), Expect = 0.60
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 78 VSDFVVSIARDYKTIMASANAMGK------DILPRVAAMLDVMQV 116
+S ++ AR K A G+ D++ VA+M+ + +
Sbjct: 39 ISAHIMEEARAGKKTAAELMQEGRTLLKPDDVMDGVASMIHEVGI 83
>2fvh_A Urease gamma subunit; protein: UREA homolog, structural genomics,
PSI, protein structure initiative; 1.80A {Mycobacterium
tuberculosis}
Length = 120
Score = 29.6 bits (67), Expect = 0.85
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
Query: 78 VSDFVVSIARDYKTIMASANAMGKDILPR------VAAMLDVMQV 116
++D ++ ARD +T +A A G+++L R V ML +QV
Sbjct: 59 IADHILEGARDGRT-VAELMASGREVLGRDDVMEGVPEMLAEVQV 102
>4ubp_A Protein (urease (chain A)); nickel, acetohydroxamic acid,
metalloenzyme; HET: KCX; 1.55A {Bacillus pasteurii}
SCOP: d.8.1.1 PDB: 1s3t_A* 2ubp_A* 3ubp_A* 1ie7_A*
1ubp_A* 1ejx_A* 1a5l_A 1a5k_A 1a5n_A 1a5o_A 1ef2_C*
1ejr_A* 1ejs_A* 1ejt_A* 1eju_A* 1ejv_A* 1a5m_A* 1ejw_A*
1fwa_A* 1fwb_A* ...
Length = 100
Score = 29.1 bits (66), Expect = 1.2
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 78 VSDFVVSIARDYKTIMASANAMGKDILPR------VAAMLDVMQV 116
++ F++ ARD KT +A GK +L R V M+D +Q
Sbjct: 39 ITSFIMEGARDGKT-VAMLMEEGKHVLTRDDVMEGVPEMIDDIQA 82
>3ou8_A Adenosine deaminase; structural genomics, PSI-2, protein structure
initiative, NE SGX research center for structural
genomics, nysgxrc; 2.51A {Pseudomonas aeruginosa}
Length = 326
Score = 28.9 bits (64), Expect = 1.5
Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 6/81 (7%)
Query: 233 IGATRDAVDAGFAPNDWQIGQTGVTVSPELYIAAGISGAIQ--HISGMKDSKVIVSINTD 290
I A + Q +TV P + + I M + V V++N+D
Sbjct: 218 IDHGVRAFEDERLMRRLIDEQIPLTVCPLSNTKLCVFDDMSQHTILDMLERGVKVTVNSD 277
Query: 291 ENAPIFKIS---DYFIVGDIF 308
+ F ++ +
Sbjct: 278 -DPAYFGGYVTENFHALQQSL 297
>2pgf_A Adenosine deaminase; metallo-dependent hydrolase, structural
genomics, medical structural genomics of pathogenic
protozoa consortium, MSGPP; HET: MSE ADN; 1.89A
{Plasmodium vivax} PDB: 2pgr_A* 2qvn_A* 2amx_A
Length = 371
Score = 28.6 bits (63), Expect = 2.1
Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 7/88 (7%)
Query: 229 LGA-AIGATRDAVDAGFAPNDWQIGQTGVTVSP--ELYIAAGISGAIQHISGMKDSKVIV 285
L IG ++ + + + V P + + S I + D+ V V
Sbjct: 254 LKVERIGHGIRVAESQELIDMVKEKNILLEVCPISNVLLKNAKSMDTHPIRQLYDAGVKV 313
Query: 286 SINTDENAPIFKIS---DYFIVGDIFKI 310
S+N+D + +F + DY +
Sbjct: 314 SVNSD-DPGMFLTNINDDYEELYTHLNF 340
>1m2k_A Silent information regulator 2; protein-ligand complex, gene
regulation; HET: APR; 1.47A {Archaeoglobus fulgidus}
SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A*
1ici_A*
Length = 249
Score = 28.1 bits (62), Expect = 2.7
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 260 PELYIAAGISGAIQHISGM------KDSKVIVSINTDENAPIFKISDYFIVGDIFKILPE 313
++ I AG S +Q + + + +I IN DE P+ I+DY + G +++ E
Sbjct: 178 ADVIIVAGTSAVVQPAASLPLIVKQRGGAIIE-INPDE-TPLTPIADYSLRGKAGEVMDE 235
Query: 314 IEKNL 318
+ +++
Sbjct: 236 LVRHV 240
>3lu0_C DNA-directed RNA polymerase subunit beta; E. coli RNA polymerase,
nucleotidyltransferase, transcription, transferase;
11.20A {Escherichia coli} PDB: 3iyd_C*
Length = 1342
Score = 27.6 bits (61), Expect = 3.3
Identities = 29/141 (20%), Positives = 48/141 (34%), Gaps = 13/141 (9%)
Query: 185 RFIKEERTSLSPTDLSSAKIVISGGKSF---GSMENFHKLLLPLA-----KKLGAAIGAT 236
R + +L P D+ +AK + + K F + F PL+ +++ A
Sbjct: 478 RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMVQNNPLSEITHKRRISALGPGG 537
Query: 237 RDAVDAGFAPNDWQIGQTGVTVSPELYIAAGISGAIQHISGMKDSKVIVSINTDENAPIF 296
AGF D G E I G I +S + + T P
Sbjct: 538 LTRERAGFEVRDVHPTHYGRVCPIETPEGPNI-GLINSLSVYAQTNEYGFLET----PYR 592
Query: 297 KISDYFIVGDIFKILPEIEKN 317
K++D + +I + E N
Sbjct: 593 KVTDGVVTDEIHYLSAIEEGN 613
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family;
enzyme-substrate complex, protein binding,
transcription; HET: ALY MES; 2.00A {Archaeoglobus
fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Length = 253
Score = 27.4 bits (60), Expect = 4.8
Identities = 13/79 (16%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Query: 246 PNDWQIGQTGVTVSPELYIAAGISGAIQHISGM------KDSKVIVSINTDENAPIFKIS 299
P + ++ G S + + + +K+I+ +N + I
Sbjct: 170 PQRTLFEAIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMII-VNAEPT-MADPIF 227
Query: 300 DYFIVGDIFKILPEIEKNL 318
D I+G ++LP+I + +
Sbjct: 228 DVKIIGKAGEVLPKIVEEV 246
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1,
nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga
maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A*
2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 2h4h_A*
3jr3_A* 2h59_A*
Length = 246
Score = 26.7 bits (58), Expect = 6.7
Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 6/78 (7%)
Query: 246 PNDWQIGQTGVTVSPELYIAAGISGAIQHISGM-----KDSKVIVSINTDENAPIFKISD 300
P D G++ L I G S + + + + +V +N E P I+
Sbjct: 167 PQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGE-TPFDDIAT 225
Query: 301 YFIVGDIFKILPEIEKNL 318
D+ + + +
Sbjct: 226 LKYNMDVVEFARRVMEEG 243
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 8.1
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 4/24 (16%)
Query: 277 GMKDSKVIVSIN--TDENAPIFKI 298
+K K+ S+ D++AP I
Sbjct: 21 ALK--KLQASLKLYADDSAPALAI 42
>3iyd_C DNA-directed RNA polymerase subunit beta; transcription,
initiation, class I, activator, RNA polymerase,
holoenzyme, sigma70, open complex, CAP, CRP,
CAMP-dependent; HET: DNA CMP; 19.80A {Escherichia coli
k-12}
Length = 1342
Score = 26.6 bits (58), Expect = 8.5
Identities = 27/144 (18%), Positives = 48/144 (33%), Gaps = 19/144 (13%)
Query: 185 RFIKEERTSLSPTDLSSAKIVISGGKSFGSMENFHKLL---LPLA-----KKLGAAIGAT 236
R + +L P D+ +AK + + K F + + PL+ +++ A
Sbjct: 478 RLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGG 537
Query: 237 RDAVDAGFAPND---WQIGQTGVTVSPELYIAAGISGAIQHISGMKDSKVIVSINTDENA 293
AGF D G+ +PE G I +S +
Sbjct: 538 LTRERAGFEVRDVHPTHYGRVCPIETPE----GPNIGLINSLSVY----AQTNEYGFLET 589
Query: 294 PIFKISDYFIVGDIFKILPEIEKN 317
P K++D + +I + E N
Sbjct: 590 PYRKVTDGVVTDEIHYLSAIEEGN 613
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.318 0.133 0.367
Gapped
Lambda K H
0.267 0.0758 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,606,934
Number of extensions: 119468
Number of successful extensions: 442
Number of sequences better than 10.0: 1
Number of HSP's gapped: 425
Number of HSP's successfully gapped: 25
Length of query: 318
Length of database: 5,693,230
Length adjustment: 92
Effective length of query: 226
Effective length of database: 3,462,782
Effective search space: 782588732
Effective search space used: 782588732
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.7 bits)