HHsearch alignment for GI: 254780370 and conserved domain: TIGR00839
>TIGR00839 aspA aspartate ammonia-lyase; InterPro: IPR004708 A number of enzymes, belonging to the lyase class, for which fumarate is a substrate have been shown , to share a short conserved sequence around a methionine which is probably involved in the catalytic activity of this type of enzymes. Aspartate ammonia-lyase catalyses the conversion of aspartate to fumarate.; GO: 0008797 aspartate ammonia-lyase activity, 0006531 aspartate metabolic process.
Probab=100.00 E-value=0 Score=390.74 Aligned_cols=404 Identities=22% Similarity=0.246 Sum_probs=337.2
Q ss_pred HHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH-HHHCCCEECCCCCCHHH---
Q ss_conf 46999984255---078999999999999999999998799998999999999999996-66459800156646379---
Q gi|254780370|r 22 PSWIMEKINVS---IDFDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEGLKVIRA-EIVDGSFVFSRDLEDIH--- 94 (473)
Q Consensus 22 ~~~~~~~~~~s---~~~D~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~i~~al~~i~~-~~~~~~~~~~~~~edvh--- 94 (473)
T Consensus 22 TLRA~ENF~Itn~ki~~~pefi~~~~~VKKAaaLAN~~l~~i~~~~~~AIv~AcDe~l~~GK~~DQFivD~~QGGAGTS~ 101 (469)
T TIGR00839 22 TLRASENFFITNDKISDVPEFIRGLAMVKKAAALANVELGLIPEKIAQAIVAACDEILETGKCHDQFIVDVIQGGAGTSV 101 (469)
T ss_pred HHHHHHCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 43332030336861136078999999999999875588743088999999999999985687100222443338876542
Q ss_pred -HHH----HHHHHHHHH-CCCCCCC--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf -999----999973111-0234201--------44101123788799999999999986778899999744773014520
Q gi|254780370|r 95 -MNI----EARLTSLIG-SIAGKMH--------TARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIM 160 (473)
Q Consensus 95 -~~i----E~~l~~~~G-~~~~~lH--------~grSrND~~~t~~rl~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m 160 (473)
T Consensus 102 NMN~NEViaN~ALE~mGH~KGeY~~~~PndHVN~sQStNDayPta~~Ia~y~~L~kL~~~~~~l~~~F~~KA~EF~~viK 181 (469)
T TIGR00839 102 NMNTNEVIANLALEIMGHKKGEYQFLNPNDHVNRSQSTNDAYPTALRIAVYKSLEKLVDTMEDLRDAFKQKAKEFASVIK 181 (469)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 23067899998887625514662120886510224666664401789999999999999999999999888899888862
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH-------HHHHCCCCC-CCC
Q ss_conf 016653011334445678888887862069899987454233565320335666789989-------631038764-347
Q gi|254780370|r 161 PGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDRHF-------TAKELGFRE-PTR 232 (473)
Q Consensus 161 pg~TH~Q~A~P~T~g~~l~~~~~~l~rd~~rL~~~~~~~~~~pLG~~A~~GT~~~idr~~-------~a~~LGf~~-~~~ 232 (473)
T Consensus 182 MGRTqLQDAVPmtlGQEF~ay~~~l~~di~~~~~~~~~l~EvNlGaTAi-GTGlN~~~~Y~~lvvK~laevtG~p~V~A~ 260 (469)
T TIGR00839 182 MGRTQLQDAVPMTLGQEFEAYALLLERDIKNIKRTRQLLLEVNLGATAI-GTGLNTPPEYIKLVVKKLAEVTGLPLVPAE 260 (469)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE-CCCCCCCHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf 1675454532355560489999999999999999987787763475102-157787711389998876411688642523
Q ss_pred CHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 85673027886424677768876648999999999841---245615404554565300444336013899876689997
Q gi|254780370|r 233 NSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWST---PQFNFVRLSDAFSTGSSIMPQKRNPDGAELVRAKTGRIN 309 (473)
Q Consensus 233 ns~dav~sRd~~~e~~~~l~~~~~~l~rla~Dl~~~ss---~e~~~i~l~~~~~~GSSiMPqKrNP~~~E~ir~~a~~~~ 309 (473)
T Consensus 261 ~LieAT~~tgAYv~V~g~LKr~avklSKvcNDLRLlsSGPRAGL~EInLP-~~QpGSSIMPgKVNPV~pEvvNQvcF~VI 339 (469)
T TIGR00839 261 NLIEATQDTGAYVEVSGALKRIAVKLSKVCNDLRLLSSGPRAGLNEINLP-ELQPGSSIMPGKVNPVVPEVVNQVCFKVI 339 (469)
T ss_pred HHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCC-CCCCCCCCCCCCCCCCHHHHHHHHHCEEE
T ss_conf 57775338996266418899999986457656776405775440005764-44778843787778721432520420100
Q ss_pred HHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCEECCCHHHHCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 5233587674048400001001005579889999998656765-230586665210121123784439999999998539
Q gi|254780370|r 310 GALLSLLTIMKGLPLAYSKDMQEDKEPVFDALETLQIIILAIS-AMIEDLTVNKDRLQEAATKSHSTATDLADWLVSHAG 388 (473)
Q Consensus 310 g~~~~~~~~~~~~p~~~~rDlq~~~~~l~~ai~~~~~~L~l~~-~li~~l~vn~erm~~~~~~~~~~AT~lAd~Lv~~~G 388 (473)
T Consensus 340 GND~tv~lA~EaGQLqLNVmEPVi~~~lf~S~~Il~na~~~l~~kC~~GItaN~~~c~~YV~nSiGivT~lNPhi----G 415 (469)
T TIGR00839 340 GNDTTVTLAAEAGQLQLNVMEPVIGQALFESISILTNAIENLTDKCVEGITANEKICEDYVFNSIGIVTALNPHI----G 415 (469)
T ss_pred CCCHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHCCCCEECCCCCC----C
T ss_conf 562588886113510120000689999999999998999988864203106768987401001110201014201----4
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCCHHHHHHCCHHHHH
Q ss_conf 99799999999999999982989689899999940011326899965999999
Q gi|254780370|r 389 LPFREAHYITGCTVSLAEKNQCELAKLPLAMLQQISPVITSAVYDILKVESSI 441 (473)
Q Consensus 389 ipFReAH~iVg~lV~~A~~~g~~l~el~~~~~~~~~~~~~~di~~~ldp~~~v 441 (473)
T Consensus 416 ------y~~~~~iak~a~~tg~svrd~~Le~----~~LTee~LDdIl~~~nl~ 458 (469)
T TIGR00839 416 ------YENGALIAKEAAKTGKSVRDVVLEK----GLLTEEELDDILSPENLL 458 (469)
T ss_pred ------CCHHHHHHHHHHHCCCCHHHHHHCC----CCCCHHHHHCCCCHHHHC
T ss_conf ------2237799999974388330232224----556755410103826512