HHsearch alignment for GI: 254780370 and conserved domain: TIGR02426
>TIGR02426 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisomerase; InterPro: IPR012789 Proteins in this entry are 3-carboxy-cis,cis-muconate cycloisomerases, which catalyse the second step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate can all be converted in one step to protocatechuate. All members of the seed alignment for this entry were chosen from within protocatechuate degradation operons of at least three genes of the pathway, and from genomes with the complete pathway through beta-ketoadipate.; GO: 0047472 3-carboxy-ciscis-muconate cycloisomerase activity, 0019619 protocatechuate catabolic process.
Probab=100.00 E-value=0 Score=410.12 Aligned_cols=329 Identities=22% Similarity=0.247 Sum_probs=275.5
Q ss_pred HCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCC
Q ss_conf 2033238434699998425507899999999999999999999879-999899999999999999666459800156646
Q gi|254780370|r 13 MWGGRFSSSPSWIMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQG-IISSEEAQKIIEGLKVIRAEIVDGSFVFSRDLE 91 (473)
Q Consensus 13 lW~grf~~~~~~~~~~~~~s~~~D~~l~~~di~~~~Ah~~~l~~~g-ii~~~~~~~i~~al~~i~~~~~~~~~~~~~~~e 91 (473)
T Consensus 1 L~~g~fg~~~--~~~~fs-----D~A~l~Aml~fEaALa~A~A~~Ga~iP~~Aa~~i~a~~~~~~~D~~~L~~-~~A~~G 72 (351)
T TIGR02426 1 LLDGLFGDPA--ALELFS-----DRAFLRAMLDFEAALARAQADVGALIPAEAAEAIEAACAEAAPDLEALAE-AAAEAG 72 (351)
T ss_pred CCCCCCCCHH--HHHHCC-----HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHCC
T ss_conf 9998888407--887518-----49999999999999999885228989788999999999877877999999-986189
Q ss_pred HHHHHHHHHHHHHHH----CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 379999999973111----0234201441011237887999999999999867788999997447730145200166530
Q gi|254780370|r 92 DIHMNIEARLTSLIG----SIAGKMHTARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQ 167 (473)
Q Consensus 92 dvh~~iE~~l~~~~G----~~~~~lH~grSrND~~~t~~rl~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~mpg~TH~Q 167 (473)
T Consensus 73 n~vipLV~~L~~~va~hd~~aa~~VH~GATSQDviDT~LML~lr~a~~l~~adl~~L~~~La~La~~hr~tpm~grTl~Q 152 (351)
T TIGR02426 73 NPVIPLVKALRKAVAEHDPEAARYVHRGATSQDVIDTALMLQLRDALDLLLADLGRLADALADLAARHRDTPMTGRTLLQ 152 (351)
T ss_pred CCCHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCC
T ss_conf 98725899888863378721251026787357699999999999999999998999999999999973778873000001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCCC---CCC-HHHHHHHCCCCCC--CCCHHH
Q ss_conf 1133444567888888786206989998745423356532033-----5666---789-9896310387643--478567
Q gi|254780370|r 168 TAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALA-----GTSF---PID-RHFTAKELGFREP--TRNSID 236 (473)
Q Consensus 168 ~A~P~T~g~~l~~~~~~l~rd~~rL~~~~~~~~~~pLG~~A~~-----GT~~---~id-r~~~a~~LGf~~~--~~ns~d 236 (473)
T Consensus 153 ~A~P~T~G~k~AgWL~~v~ra~~RL~~l~~~~l~lQfGGAaGTLaa~~~~~G~~D~~~va~aLA~~LgL~~P~~pWHt-- 230 (351)
T TIGR02426 153 QAVPTTFGLKAAGWLAAVLRARDRLAALRTEALPLQFGGAAGTLAALLETRGATDALAVAAALAARLGLPLPALPWHT-- 230 (351)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC--
T ss_conf 156799998863268899999999998764143101460689999850688899837899999986076778888763--
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCC--CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 30278864246777688766489999999998412456154045545--6530044433601389987668999752335
Q gi|254780370|r 237 SVSDRDFILECLSHSAICAMHMSRLAEEIILWSTPQFNFVRLSDAFS--TGSSIMPQKRNPDGAELVRAKTGRINGALLS 314 (473)
Q Consensus 237 av~sRd~~~e~~~~l~~~~~~l~rla~Dl~~~ss~e~~~i~l~~~~~--~GSSiMPqKrNP~~~E~ir~~a~~~~g~~~~ 314 (473)
T Consensus 231 ---~R~~ia~~g~~Lal~aGalGKia~Dv~ll~~~E~gE~~EP-~~gGkGGSSaMPHKrNPV~a~~~~~aA~r~P~L~AT 306 (351)
T TIGR02426 231 ---QRDRIADFGAALALVAGALGKIAGDVALLSQTEVGEVFEP-AGGGKGGSSAMPHKRNPVGAVLLLAAARRAPGLAAT 306 (351)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf ---1479999999999998656788999999987767875068-888689887881003738999999999886999999
Q ss_pred HHH-HHHCCCCHHCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 876-740484000010---01005579889999998656765230586
Q gi|254780370|r 315 LLT-IMKGLPLAYSKD---MQEDKEPVFDALETLQIIILAISAMIEDL 358 (473)
Q Consensus 315 ~~~-~~~~~p~~~~rD---lq~~~~~l~~ai~~~~~~L~l~~~li~~l 358 (473)
T Consensus 307 L~~aal---~~~~ERs~G~WhaEW~~Lr~l~~lT~gAl~~~~~l~~Gl 351 (351)
T TIGR02426 307 LFAAAL---AQEHERSLGGWHAEWETLRELVRLTAGALRQAAELAEGL 351 (351)
T ss_pred HHHHHH---CCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 988530---211126520223201356999999999999999986039