HHsearch alignment for GI: 254780370 and conserved domain: TIGR02426

>TIGR02426 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisomerase; InterPro: IPR012789 Proteins in this entry are 3-carboxy-cis,cis-muconate cycloisomerases, which catalyse the second step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate can all be converted in one step to protocatechuate. All members of the seed alignment for this entry were chosen from within protocatechuate degradation operons of at least three genes of the pathway, and from genomes with the complete pathway through beta-ketoadipate.; GO: 0047472 3-carboxy-ciscis-muconate cycloisomerase activity, 0019619 protocatechuate catabolic process.
Probab=100.00  E-value=0  Score=410.12  Aligned_cols=329  Identities=22%  Similarity=0.247  Sum_probs=275.5

Q ss_pred             HCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCC
Q ss_conf             2033238434699998425507899999999999999999999879-999899999999999999666459800156646
Q gi|254780370|r   13 MWGGRFSSSPSWIMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQG-IISSEEAQKIIEGLKVIRAEIVDGSFVFSRDLE   91 (473)
Q Consensus        13 lW~grf~~~~~~~~~~~~~s~~~D~~l~~~di~~~~Ah~~~l~~~g-ii~~~~~~~i~~al~~i~~~~~~~~~~~~~~~e   91 (473)
T Consensus         1 L~~g~fg~~~--~~~~fs-----D~A~l~Aml~fEaALa~A~A~~Ga~iP~~Aa~~i~a~~~~~~~D~~~L~~-~~A~~G   72 (351)
T TIGR02426         1 LLDGLFGDPA--ALELFS-----DRAFLRAMLDFEAALARAQADVGALIPAEAAEAIEAACAEAAPDLEALAE-AAAEAG   72 (351)
T ss_pred             CCCCCCCCHH--HHHHCC-----HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHCC
T ss_conf             9998888407--887518-----49999999999999999885228989788999999999877877999999-986189


Q ss_pred             HHHHHHHHHHHHHHH----CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf             379999999973111----0234201441011237887999999999999867788999997447730145200166530
Q gi|254780370|r   92 DIHMNIEARLTSLIG----SIAGKMHTARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQ  167 (473)
Q Consensus        92 dvh~~iE~~l~~~~G----~~~~~lH~grSrND~~~t~~rl~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~mpg~TH~Q  167 (473)
T Consensus        73 n~vipLV~~L~~~va~hd~~aa~~VH~GATSQDviDT~LML~lr~a~~l~~adl~~L~~~La~La~~hr~tpm~grTl~Q  152 (351)
T TIGR02426        73 NPVIPLVKALRKAVAEHDPEAARYVHRGATSQDVIDTALMLQLRDALDLLLADLGRLADALADLAARHRDTPMTGRTLLQ  152 (351)
T ss_pred             CCCHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCC
T ss_conf             98725899888863378721251026787357699999999999999999998999999999999973778873000001


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCCC---CCC-HHHHHHHCCCCCC--CCCHHH
Q ss_conf             1133444567888888786206989998745423356532033-----5666---789-9896310387643--478567
Q gi|254780370|r  168 TAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALA-----GTSF---PID-RHFTAKELGFREP--TRNSID  236 (473)
Q Consensus       168 ~A~P~T~g~~l~~~~~~l~rd~~rL~~~~~~~~~~pLG~~A~~-----GT~~---~id-r~~~a~~LGf~~~--~~ns~d  236 (473)
T Consensus       153 ~A~P~T~G~k~AgWL~~v~ra~~RL~~l~~~~l~lQfGGAaGTLaa~~~~~G~~D~~~va~aLA~~LgL~~P~~pWHt--  230 (351)
T TIGR02426       153 QAVPTTFGLKAAGWLAAVLRARDRLAALRTEALPLQFGGAAGTLAALLETRGATDALAVAAALAARLGLPLPALPWHT--  230 (351)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC--
T ss_conf             156799998863268899999999998764143101460689999850688899837899999986076778888763--


Q ss_pred             HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCC--CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             30278864246777688766489999999998412456154045545--6530044433601389987668999752335
Q gi|254780370|r  237 SVSDRDFILECLSHSAICAMHMSRLAEEIILWSTPQFNFVRLSDAFS--TGSSIMPQKRNPDGAELVRAKTGRINGALLS  314 (473)
Q Consensus       237 av~sRd~~~e~~~~l~~~~~~l~rla~Dl~~~ss~e~~~i~l~~~~~--~GSSiMPqKrNP~~~E~ir~~a~~~~g~~~~  314 (473)
T Consensus       231 ---~R~~ia~~g~~Lal~aGalGKia~Dv~ll~~~E~gE~~EP-~~gGkGGSSaMPHKrNPV~a~~~~~aA~r~P~L~AT  306 (351)
T TIGR02426       231 ---QRDRIADFGAALALVAGALGKIAGDVALLSQTEVGEVFEP-AGGGKGGSSAMPHKRNPVGAVLLLAAARRAPGLAAT  306 (351)
T ss_pred             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             ---1479999999999998656788999999987767875068-888689887881003738999999999886999999


Q ss_pred             HHH-HHHCCCCHHCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             876-740484000010---01005579889999998656765230586
Q gi|254780370|r  315 LLT-IMKGLPLAYSKD---MQEDKEPVFDALETLQIIILAISAMIEDL  358 (473)
Q Consensus       315 ~~~-~~~~~p~~~~rD---lq~~~~~l~~ai~~~~~~L~l~~~li~~l  358 (473)
T Consensus       307 L~~aal---~~~~ERs~G~WhaEW~~Lr~l~~lT~gAl~~~~~l~~Gl  351 (351)
T TIGR02426       307 LFAAAL---AQEHERSLGGWHAEWETLRELVRLTAGALRQAAELAEGL  351 (351)
T ss_pred             HHHHHH---CCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             988530---211126520223201356999999999999999986039