RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780370|ref|YP_003064783.1| argininosuccinate lyase
[Candidatus Liberibacter asiaticus str. psy62]
(473 letters)
>gnl|CDD|176463 cd01359, Argininosuccinate_lyase, Argininosuccinate lyase
(argininosuccinase, ASAL). This group contains ASAL and
related proteins. It is a member of the Lyase class I
family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. ASAL is a cytosolic enzyme which catalyzes the
reversible breakdown of argininosuccinate to arginine
and fumarate during arginine biosynthesis. In ureotelic
species ASAL also catalyzes a reaction involved in the
production of urea. Included in this group are the major
soluble avian eye lens proteins from duck, delta 1 and
delta 2 crystallin. Of these two isoforms only delta 2
has retained ASAL activity. These crystallins may have
evolved by, gene recruitment of ASAL followed by gene
duplication. In humans, mutations in ASAL result in the
autosomal recessive disorder argininosuccinic aciduria.
Length = 435
Score = 674 bits (1742), Expect = 0.0
Identities = 247/435 (56%), Positives = 317/435 (72%)
Query: 32 SIDFDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSRDLE 91
SI FD++LFE+DI GS H MLA+QGI++ EEA KI+ GL IRAEI G+F + E
Sbjct: 1 SISFDRRLFEEDIAGSIAHAVMLAEQGILTEEEAAKILAGLAKIRAEIEAGAFELDPEDE 60
Query: 92 DIHMNIEARLTSLIGSIAGKMHTARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDK 151
DIHM IE RL IG + GK+HT RSRNDQVA DLRL++++ LE+ L L LLD+
Sbjct: 61 DIHMAIERRLIERIGDVGGKLHTGRSRNDQVATDLRLYLRDALLELLELLLDLQRALLDR 120
Query: 152 AEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAG 211
AEEH +TIMPG+THLQ AQP+TFGH+ +AY EM RD+ R D+ +R++ PLGA ALAG
Sbjct: 121 AEEHADTIMPGYTHLQRAQPITFGHYLLAYAEMLERDLERLADAYKRVNVSPLGAGALAG 180
Query: 212 TSFPIDRHFTAKELGFREPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWSTP 271
T+FPIDR TA+ LGF PT NS+D+VSDRDF+LE LS +A+ +H+SRLAE++ILWST
Sbjct: 181 TTFPIDRERTAELLGFDGPTENSLDAVSDRDFVLEFLSAAALLMVHLSRLAEDLILWSTQ 240
Query: 272 QFNFVRLSDAFSTGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSKDMQ 331
+F FV L DA+STGSSIMPQK+NPD EL+R K GR+ GAL LLT +KGLPLAY+KD+Q
Sbjct: 241 EFGFVELPDAYSTGSSIMPQKKNPDVLELIRGKAGRVIGALAGLLTTLKGLPLAYNKDLQ 300
Query: 332 EDKEPVFDALETLQIIILAISAMIEDLTVNKDRLQEAATKSHSTATDLADWLVSHAGLPF 391
EDKEP+FDA++TL + ++ +I LTVN +R++EAA STATDLAD+LV G+PF
Sbjct: 301 EDKEPLFDAVDTLIASLRLLTGVISTLTVNPERMREAAEAGFSTATDLADYLVREKGVPF 360
Query: 392 REAHYITGCTVSLAEKNQCELAKLPLAMLQQISPVITSAVYDILKVESSISSRKSFGGTC 451
REAH+I G V LAE+ +L+ L LA LQ ISP+ V + L E+S+ R S+GGT
Sbjct: 361 REAHHIVGRAVRLAEEKGKDLSDLTLAELQAISPLFEEDVREALDPENSVERRTSYGGTA 420
Query: 452 AAEVLKQVTYWRNRI 466
AEV +Q+ R +
Sbjct: 421 PAEVREQIARARALL 435
>gnl|CDD|30514 COG0165, ArgH, Argininosuccinate lyase [Amino acid transport and
metabolism].
Length = 459
Score = 635 bits (1639), Expect = 0.0
Identities = 258/458 (56%), Positives = 329/458 (71%), Gaps = 1/458 (0%)
Query: 11 NQMWGGRFSSSPSWIMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIE 70
N++WGGRFS P ++++ N SI FDK+L E DI GS H MLAKQGII+ EEA KI+E
Sbjct: 3 NKLWGGRFSGGPDPLVKEFNASISFDKRLAEYDIAGSIAHAKMLAKQGIITEEEAAKILE 62
Query: 71 GLKVIRAEIVDGSFVFSRDLEDIHMNIEARLTSLIGSIAGKMHTARSRNDQVALDLRLWI 130
GL+ + EI G F D ED+H IEARL IG + GK+HT RSRNDQVA DLRLW+
Sbjct: 63 GLEELLEEIRAGKFELDPDDEDVHTAIEARLIERIGDVGGKLHTGRSRNDQVATDLRLWL 122
Query: 131 KEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDIS 190
++K LE+ ++ L LLD AEEH T+MPG+THLQ AQPVTF HH +AY EM RDI
Sbjct: 123 RDKLLELLELIRILQKALLDLAEEHAETVMPGYTHLQRAQPVTFAHHLLAYAEMLARDIE 182
Query: 191 RFFDSIERLDECPLGAAALAGTSFPIDRHFTAKELGFREPTRNSIDSVSDRDFILECLSH 250
R D+++R++ PLGA ALAGT FPIDR TA+ LGF TRNS+D+VSDRDFILE LS
Sbjct: 183 RLRDALKRVNVSPLGAGALAGTPFPIDRERTAELLGFDAVTRNSLDAVSDRDFILEFLSA 242
Query: 251 SAICAMHMSRLAEEIILWSTPQFNFVRLSDAFSTGSSIMPQKRNPDGAELVRAKTGRING 310
+A+ +H+SRLAE++ILWS+P+F F+ L D FSTGSSIMPQK+NPD EL+R K GR+ G
Sbjct: 243 AALIMVHLSRLAEDLILWSSPEFGFIELPDEFSTGSSIMPQKKNPDVLELIRGKAGRVIG 302
Query: 311 ALLSLLTIMKGLPLAYSKDMQEDKEPVFDALETLQIIILAISAMIEDLTVNKDRLQEAAT 370
AL LLTIMKGLPLAY++D+QEDKEP+FD+++TL+ + ++ M+ LTVNK+R++EAA
Sbjct: 303 ALTGLLTIMKGLPLAYNRDLQEDKEPLFDSVDTLEDSLRVLAGMVSGLTVNKERMREAAE 362
Query: 371 KSHSTATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQCELAKLPLAMLQQISPVITSA 430
STATDLAD+LV G+PFREAH I G V AE+ +LA L L LQ ISP+I
Sbjct: 363 AGFSTATDLADYLVR-KGVPFREAHEIVGEAVRRAEERGKDLADLSLEELQSISPLIDED 421
Query: 431 VYDILKVESSISSRKSFGGTCAAEVLKQVTYWRNRIQN 468
VY++L E S++ R S GGT EV + + + R+
Sbjct: 422 VYEVLTPEESVAKRNSEGGTAPEEVREAIARAKARLAA 459
>gnl|CDD|36530 KOG1316, KOG1316, KOG1316, Argininosuccinate lyase [Amino acid
transport and metabolism].
Length = 464
Score = 503 bits (1296), Expect = e-143
Identities = 210/455 (46%), Positives = 302/455 (66%), Gaps = 2/455 (0%)
Query: 12 QMWGGRFSSSPSWIMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEG 71
++WGGRF+ + +MEK N SI +DK+L+E D+ GSK + L K G+I+ E KI++G
Sbjct: 7 KLWGGRFTGAVDPLMEKFNASIPYDKRLYEADVDGSKAYAKALEKAGLITEAELDKILKG 66
Query: 72 LKVIRAEIVDGSFVFSRDLEDIHMNIEARLTSLIGSIAGKMHTARSRNDQVALDLRLWIK 131
L+ IR E G F + + ED+H E RLT LIG IAGK+HT RSRNDQV DLRLW++
Sbjct: 67 LEKIRREWAAGKFKLNPNDEDVHTANERRLTELIGEIAGKLHTGRSRNDQVVTDLRLWLR 126
Query: 132 EKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISR 191
+ I L L+ +L+D+AE + +MPG+THLQ AQPV + H +++ E RD+ R
Sbjct: 127 DAIDTILGLLWNLIRVLVDRAEAELDVLMPGYTHLQRAQPVRWSHWLLSHAEQLTRDLGR 186
Query: 192 FFDSIERLDECPLGAAALAGTSFPIDRHFTAKELGFREPTRNSIDSVSDRDFILECLSHS 251
+RL++ PLGA ALAG IDR F A+ELGF NS+D+VSDRDF++E L +
Sbjct: 187 LVQIRKRLNQLPLGAGALAGNPLGIDREFLAEELGFEGVIMNSMDAVSDRDFVVEFLFWA 246
Query: 252 AICAMHMSRLAEEIILWSTPQFNFVRLSDAFSTGSSIMPQKRNPDGAELVRAKTGRINGA 311
++ H+SRLAE++I++ST +F FV LSDA+STGSS+MPQK+NPD EL+R K+GR+ G
Sbjct: 247 SMVMTHLSRLAEDLIIYSTKEFGFVTLSDAYSTGSSLMPQKKNPDSLELLRGKSGRVFGD 306
Query: 312 LLSLLTIMKGLPLAYSKDMQEDKEPVFDALETLQIIILAISAMIEDLTVNKDRLQEAATK 371
L LL +KGLP Y+KD+QEDKEP+FD+ +T+ + + +I LTVN++ +++A T
Sbjct: 307 LTGLLMTLKGLPSTYNKDLQEDKEPLFDSSKTVSDSLQVATGVISTLTVNQENMEKALT- 365
Query: 372 SHSTATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQCELAKLPLAMLQQISPVITSAV 431
ATDLA +LV G+PFR+ H+I+G V +AE+ L KL L LQ++SP+ V
Sbjct: 366 PDMLATDLAYYLV-RKGVPFRQTHHISGKAVRMAEERGVTLDKLSLEDLQKLSPLFEEDV 424
Query: 432 YDILKVESSISSRKSFGGTCAAEVLKQVTYWRNRI 466
+ + E+S+ R + GGT + VL+Q+ + +
Sbjct: 425 FCVFNYENSVEKRCAIGGTAKSCVLEQLRQLKKAL 459
>gnl|CDD|176461 cd01334, Lyase_I, Lyase class I family; a group of proteins which
catalyze similar beta-elimination reactions. The Lyase
class I family contains class II fumarase, aspartase,
adenylosuccinate lyase (ASL), argininosuccinate lyase
(ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate
cycloisomerase (pCMLE), and related proteins. It belongs
to the Lyase_I superfamily. Proteins of this family for
the most part catalyze similar beta-elimination
reactions in which a C-N or C-O bond is cleaved with the
release of fumarate as one of the products. These
proteins are active as tetramers. The four active sites
of the homotetrameric enzyme are each formed by residues
from three different subunits.
Length = 325
Score = 391 bits (1007), Expect = e-109
Identities = 123/325 (37%), Positives = 175/325 (53%), Gaps = 3/325 (0%)
Query: 40 FEQDILGSKVHTTMLAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSRDLEDIHMNIEA 99
D+ K H LA+ G++ E A+ I+ L I I M +E
Sbjct: 1 IRADLQVEKAHAKALAELGLLPKEAAEAILAALDEILEGIAADQVEQEGSGTHDVMAVEE 60
Query: 100 RLTSLIGSI-AGKMHTARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNT 158
L G + G +HT RS ND V LRL +++ + LK L+ L KAEEH +T
Sbjct: 61 VLAERAGELNGGYVHTGRSSNDIVDTALRLALRDALDILLPALKALIDALAAKAEEHKDT 120
Query: 159 IMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSF--PI 216
+MPG THLQ AQP T GH A+ RD+ R ++++RL+ PLG A+ + PI
Sbjct: 121 VMPGRTHLQDAQPTTLGHELAAWAAELERDLERLEEALKRLNVLPLGGGAVGTGANAPPI 180
Query: 217 DRHFTAKELGFREPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWSTPQFNFV 276
DR A+ LGF P NS +VSDRDF++E LS A+ A+ +S++A ++ L S+ +F V
Sbjct: 181 DRERVAELLGFFGPAPNSTQAVSDRDFLVELLSALALLAVSLSKIANDLRLLSSGEFGEV 240
Query: 277 RLSDAFSTGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSKDMQEDKEP 336
L DA GSSIMPQK NP ELVR GR+ G L +LL +KG PL + D ++E
Sbjct: 241 ELPDAKQPGSSIMPQKVNPVILELVRGLAGRVIGNLAALLEALKGGPLEDNVDSPVEREA 300
Query: 337 VFDALETLQIIILAISAMIEDLTVN 361
+ D+ + L + ++ ++E L VN
Sbjct: 301 LPDSFDLLDAALRLLTGVLEGLEVN 325
>gnl|CDD|143963 pfam00206, Lyase_1, Lyase.
Length = 312
Score = 259 bits (663), Expect = 1e-69
Identities = 111/312 (35%), Positives = 149/312 (47%), Gaps = 17/312 (5%)
Query: 16 GRFSSSPSWIMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEGLKVI 75
GRF+ +M F+ +L E+DI G AK ++ EEA II+ L +
Sbjct: 1 GRFTVPADALMGIFTDRSRFNFRLSEEDIKGLAALKKAAAKANVLLKEEAAAIIKALDEV 60
Query: 76 RAEI-VDGSFVFSRDLEDIHMNIEARLTSLIGSI-------AGKMHTARSRNDQVALDLR 127
E D +FV E + L +IG + K+HT +S NDQV LR
Sbjct: 61 AEEGKADDAFVLKVIQEGSGTAVNMNLNEVIGELLGQLVHPNDKVHTGQSSNDQVPTALR 120
Query: 128 LWIKEKTLE-ITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFG 186
L +K E + L +L+ L +KA+E + + PG THLQ A PVT G Y
Sbjct: 121 LALKLALSEVLLPALGQLIDALKEKAKEFADVVKPGRTHLQDATPVTLGQELSGYAVALT 180
Query: 187 RDISRFFDSIERLDECPLGAAALAGTSFPIDRHFT---AKEL----GFREPTRNSIDSVS 239
RD+ R + R+ PLG GT D F AKEL G P NS ++ S
Sbjct: 181 RDLERLKQLLPRILVEPLGGGTAVGTGLNADPEFAELLAKELGFFTGLPVPAPNSFEATS 240
Query: 240 DRDFILECLSHSAICAMHMSRLAEEIILWSTPQFNFVRLSDAFST-GSSIMPQKRNPDGA 298
DRD ++E A+ A H+S+ A ++ L S+ F FV LS A GSSIMP K NPD
Sbjct: 241 DRDAVVEFSGALALLATHLSKFANDLRLLSSGPFGFVELSLAEGEPGSSIMPGKVNPDQL 300
Query: 299 ELVRAKTGRING 310
EL+R K GR+ G
Sbjct: 301 ELLRGKAGRVFG 312
>gnl|CDD|176466 cd01594, Lyase_I_like, Lyase class I_like superfamily: contains the
lyase class I family, histidine ammonia-lyase and
phenylalanine ammonia-lyase, which catalyze similar
beta-elimination reactions. Lyase class I_like
superfamily of enzymes that catalyze beta-elimination
reactions and are active as homotetramers. The four
active sites of the homotetrameric enzyme are each
formed by residues from three different subunits. This
superfamily contains the lyase class I family, histidine
ammonia-lyase and phenylalanine ammonia-lyase. The lyase
class I family comprises proteins similar to class II
fumarase, aspartase, adenylosuccinate lyase,
argininosuccinate lyase, and 3-carboxy-cis, cis-muconate
lactonizing enzyme which, for the most part catalyze
similar beta-elimination reactions in which a C-N or C-O
bond is cleaved with the release of fumarate as one of
the products. Histidine or phenylalanine ammonia-lyase
catalyze a beta-elimination of ammonia from histidine
and phenylalanine, respectively.
Length = 231
Score = 196 bits (501), Expect = 1e-50
Identities = 81/257 (31%), Positives = 117/257 (45%), Gaps = 54/257 (21%)
Query: 95 MNIEARLTSLIGSIAGKMH------TARSRNDQVALDLRLWIKEKTLEITNDLKKLLTIL 148
+E L G +AG +H RS ND LRL +++ ++ LK L+ L
Sbjct: 14 ALVEEVLAGRAGELAGGLHGSALVHKGRSSNDIGTTALRLALRDALDDLLPLLKALIDAL 73
Query: 149 LDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAA 208
KAE H T+MPG THLQ AQPVT G+ A+ ++ GRD +ERL+E
Sbjct: 74 ALKAEAHKGTVMPGRTHLQDAQPVTLGYELRAWAQVLGRD-------LERLEEA------ 120
Query: 209 LAGTSFPIDRHFTAKELGFREPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILW 268
+ E L A+ A H+S++AE++ L
Sbjct: 121 ----------------------------------AVAEALDALALAAAHLSKIAEDLRLL 146
Query: 269 STPQFNFVRLSDA-FSTGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYS 327
+ +F + GSSIMPQK NP AELVR G + G L+++LT +KG P +
Sbjct: 147 LSGEFGELGEPFLPGQPGSSIMPQKVNPVAAELVRGLAGLVIGNLVAVLTALKGGPERDN 206
Query: 328 KDMQEDKEPVFDALETL 344
+D +E + D+L L
Sbjct: 207 EDSPSMREILADSLLLL 223
>gnl|CDD|30365 COG0015, PurB, Adenylosuccinate lyase [Nucleotide transport and
metabolism].
Length = 438
Score = 109 bits (273), Expect = 2e-24
Identities = 91/372 (24%), Positives = 151/372 (40%), Gaps = 27/372 (7%)
Query: 54 LAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSRDLEDIH--MNIEARLTSLIGSIAGK 111
A+ G+I +E A +I D + + E H + L +G A +
Sbjct: 34 QAELGVIPAEAAAEID---AAAAFAEFDLERIKEIEAETGHDVKALVRALAEKVGEEASE 90
Query: 112 -MHTARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQ 170
+H + D + L L +KE I DLK+L+ L + A EH +T M G TH Q A+
Sbjct: 91 YVHFGATSQDIIDTALALQLKEALDLILPDLKRLIEALAELALEHKDTPMLGRTHGQPAE 150
Query: 171 PVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFP----IDRHFTAKELG 226
P TFG ++ R + R ++ ER+ +G A + A++LG
Sbjct: 151 PTTFGKKFANWLAELLRHLERLEEAEERIIVGKIGGAVGTLAALGDLGAEVEERVAEKLG 210
Query: 227 FREPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEI-ILWSTPQFNFVRLSDAFSTG 285
+ ++ VS RD I E S A+ A + + A +I +L T G
Sbjct: 211 LKPAPIST--QVSPRDRIAEFFSALALLAGSLEKFARDIRLLQRTEVGEVEEPFAKGQVG 268
Query: 286 SSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSKDMQE---DKEPVFDALE 342
SS MP KRNP +E V + +LL + L + +D+ + ++ + DA
Sbjct: 269 SSAMPHKRNPIDSENVTGLARVARALVSTLLENL---VLWHERDLTDSSVERVILPDAFI 325
Query: 343 TLQIIILAISAMIEDLTVNKDRLQE--AATKS--HSTATDLADWLVSHAGLPFREAHYIT 398
+ + ++E L VN +R++ T S LA + G+ EAH +
Sbjct: 326 AADGALNRLLNVLEGLEVNPERMRRNLDLTLGLIASERVMLA---LRKKGMGREEAHELV 382
Query: 399 -GCTVSLAEKNQ 409
+ E+ +
Sbjct: 383 REKAMKAWEQGK 394
>gnl|CDD|176467 cd01595, Adenylsuccinate_lyase_like, Adenylsuccinate lyase
(ASL)_like. This group contains ASL, prokaryotic-type
3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and
related proteins. These proteins are members of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. ASL catalyzes two steps in the
de novo purine biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and; the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP). pCMLE catalyzes the
cyclization of 3-carboxy-cis,cis-muconate (3CM) to
4-carboxy-muconolactone, in the beta-ketoadipate
pathway. ASL deficiency has been linked to several
pathologies including psychomotor retardation with
autistic features, epilepsy and muscle wasting.
Length = 381
Score = 105 bits (264), Expect = 3e-23
Identities = 75/286 (26%), Positives = 111/286 (38%), Gaps = 37/286 (12%)
Query: 54 LAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSRDLEDIHMNIEAR-----------LT 102
A+ G+I E A++I D VF D E I IE L
Sbjct: 25 QAELGLIPKEAAEEI--------RAAAD---VFEIDAERIA-EIEKETGHDVIAFVYALA 72
Query: 103 SLIGSIAGK-MHTARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMP 161
G AG+ +H + D L L +++ I DL L+ L A EH +T M
Sbjct: 73 EKCGEDAGEYVHFGATSQDINDTALALQLRDALDIILPDLDALIDALAKLALEHKDTPML 132
Query: 162 GFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGA-------AALAGTSF 214
G TH Q A P TFG + R + R ++ ER+ G A+L
Sbjct: 133 GRTHGQHALPTTFGKKFAVWAAELLRHLERLEEARERV--LVGGISGAVGTHASLGPKGP 190
Query: 215 PIDRHFTAKELGFREPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWSTPQFN 274
++ A++LG + P + + RD I E LS A+ A + ++A +I L +
Sbjct: 191 EVEERV-AEKLGLKVPPITT--QIEPRDRIAELLSALALIAGTLEKIATDIRLLQRTEIG 247
Query: 275 FVRL-SDAFSTGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIM 319
V + GSS MP KRNP +E + + L +
Sbjct: 248 EVEEPFEKGQVGSSTMPHKRNPIDSENIEGLARLVRALAAPALENL 293
>gnl|CDD|176469 cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate
cycloisomerase (CMLE)_like. This subgroup contains
pCLME and related proteins, and belongs to the Lyase
class I family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. CMLE catalyzes the cyclization of
3-carboxy-cis,cis-muconate (3CM) to
4-carboxy-muconolactone in the beta-ketoadipate pathway.
This pathway is responsible for the catabolism of a
variety of aromatic compounds into intermediates of the
citric cycle in prokaryotic and eukaryotic
micro-organisms.
Length = 437
Score = 95.0 bits (237), Expect = 4e-20
Identities = 77/271 (28%), Positives = 107/271 (39%), Gaps = 48/271 (17%)
Query: 128 LWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGR 187
L +++ + DL LL L A H +T M G THLQ A P+TFG ++ R
Sbjct: 109 LQLRDALDLLERDLDALLDALARLAATHRDTPMVGRTHLQHALPITFGLKVAVWLSELLR 168
Query: 188 DISRFFDSIERLDECPL--------GA----AALAGTSFPIDRHFTAKELGFREPTRNSI 235
ERLDE GA A+L + A ELG P I
Sbjct: 169 H-------RERLDELRPRVLVVQFGGAAGTLASLGDQGLAVQEAL-AAELGLGVPA---I 217
Query: 236 DSVSDRDFILECLSHSAICAMHMSRLAEEIILWSTPQFNFVRLSDAFSTG-SSIMPQKRN 294
+ RD I E S A+ + ++A ++ L + V A G SS MP KRN
Sbjct: 218 PWHTARDRIAELASFLALLTGTLGKIARDVYLLMQTEIGEVAEPFAKGRGGSSTMPHKRN 277
Query: 295 PDGAELVRAKTGRINGALLSLLTIMKGLPLAYSKDMQEDKEPV------FDALETLQIII 348
P G EL+ A R+ G LL M QE + + AL +I +
Sbjct: 278 PVGCELIVALARRVPGLAALLLDAMV----------QEHERDAGAWHAEWIALP--EIFL 325
Query: 349 LAISA------MIEDLTVNKDRLQEAATKSH 373
LA A ++ L VN+DR++ +
Sbjct: 326 LASGALEQAEFLLSGLEVNEDRMRANLDLTG 356
>gnl|CDD|31230 COG1027, AspA, Aspartate ammonia-lyase [Amino acid transport and
metabolism].
Length = 471
Score = 85.3 bits (211), Expect = 3e-17
Identities = 69/292 (23%), Positives = 120/292 (41%), Gaps = 26/292 (8%)
Query: 115 ARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTF 174
++S ND R+ + + ++ + L+ L+ KA+E + + G T LQ A P+T
Sbjct: 139 SQSTNDAYPTAFRIAVYKSLRKLIDALEDLIEAFERKAKEFADILKMGRTQLQDAVPMTL 198
Query: 175 GHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDRHFTAK---------EL 225
G A+ DI R + + E L E LG A+ GT + + L
Sbjct: 199 GQEFGAFAVALKEDIKRIYRAAELLLEVNLGGTAI-GTGINAPKGYIELVVKKLAEVTGL 257
Query: 226 GFREPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEI-ILWSTPQ--FNFVRLSDAF 282
P N I++ D + A+ +S++ ++ +L S P+ N + L A
Sbjct: 258 PLV-PAENLIEATQDTGAFVMVSGALKRLAVKLSKICNDLRLLSSGPRAGLNEINLP-AV 315
Query: 283 STGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSKDMQEDKEPV--FDA 340
GSSIMP K NP E+V ++ G ++ + L + EPV +
Sbjct: 316 QAGSSIMPGKVNPVIPEVVNQVCFKVIGNDTTITMAAEAGQLQLNV-----MEPVIAYAL 370
Query: 341 LETLQIIILAISAM----IEDLTVNKDRLQEAATKSHSTATDLADWLVSHAG 388
E++ I+ A + I+ +T N++R +E S T L ++
Sbjct: 371 FESISILTNACRNLREKCIDGITANEERCEEYVENSIGIVTALNPYIGYENA 422
>gnl|CDD|176462 cd01357, Aspartase, Aspartase. This subgroup contains Escherichia
coli aspartase (L-aspartate ammonia-lyase), Bacillus
aspartase and related proteins. It is a member of the
Lyase class I family, which includes both aspartase
(L-aspartate ammonia-lyase) and fumarase class II
enzymes. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. Aspartase catalyzes the reversible deamination
of aspartic acid.
Length = 450
Score = 84.9 bits (211), Expect = 5e-17
Identities = 77/296 (26%), Positives = 123/296 (41%), Gaps = 50/296 (16%)
Query: 115 ARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTF 174
++S ND LRL + ++ + L L KA E + + G T LQ A P+T
Sbjct: 133 SQSTNDVYPTALRLALILLLRKLLDALAALQEAFQAKAREFADVLKMGRTQLQDAVPMTL 192
Query: 175 GHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDRHFTAK---------EL 225
G AY RD +R + + ERL E LG A+ GT + L
Sbjct: 193 GQEFGAYATALKRDRARIYKARERLREVNLGGTAI-GTGINAPPGYIELVVEKLSEITGL 251
Query: 226 GFREPTRNSIDSVSDRDFILECLSHSAI--CAMHMSRLAEEI-ILWSTPQ--FNFVRLSD 280
+ N ID+ + D +E A+ A+ +S++A ++ +L S P+ + L
Sbjct: 252 PLK-RAENLIDATQNTDAFVEV--SGALKRLAVKLSKIANDLRLLSSGPRAGLGEINLP- 307
Query: 281 AFSTGSSIMPQKRNPDGAELVRAKTGRINGALLSL----------LTIMKGLPLAYSKDM 330
A GSSIMP K NP E+V ++ G L++ L +
Sbjct: 308 AVQPGSSIMPGKVNPVIPEVVNQVAFQVIGNDLTITMAAEAGQLELNVF----------- 356
Query: 331 QEDKEPV--FDALETLQIIILAISAM----IEDLTVNKDRLQEAATKSHSTATDLA 380
EPV ++ LE++ I+ A+ + I+ +T N++R +E S T L
Sbjct: 357 ----EPVIAYNLLESIDILTNAVRTLRERCIDGITANEERCREYVENSIGIVTALN 408
>gnl|CDD|176468 cd01596, Aspartase_like, aspartase (L-aspartate ammonia-lyase) and
fumarase class II enzymes. This group contains
aspartase (L-aspartate ammonia-lyase), fumarase class II
enzymes, and related proteins. It is a member of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. Aspartase catalyzes the
reversible deamination of aspartic acid. Fumarase
catalyzes the reversible hydration/dehydration of
fumarate to L-malate during the Krebs cycle.
Length = 450
Score = 80.2 bits (199), Expect = 1e-15
Identities = 59/188 (31%), Positives = 86/188 (45%), Gaps = 22/188 (11%)
Query: 128 LWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGR 187
L + E+ L L++L L KAEE + + G THLQ A P+T G Y R
Sbjct: 149 LALLERLLP---ALEQLQDALDAKAEEFADIVKIGRTHLQDAVPLTLGQEFSGYAAQLAR 205
Query: 188 DISRFFDSIERLDECPLGAAALAGTSFPIDRHFTAK---------ELGFREPTRNSIDSV 238
DI+R ++ERL E LG A+ GT + K L F N ++
Sbjct: 206 DIARIEAALERLRELNLGGTAV-GTGLNAPPGYAEKVAAELAELTGLPFV-TAPNLFEAT 263
Query: 239 SDRDFILECLSHSAI--CAMHMSRLAEEI-ILWSTPQ--FNFVRLSDAFSTGSSIMPQKR 293
+ D ++E A+ A+ +S++A ++ +L S P+ + L A GSSIMP K
Sbjct: 264 AAHDALVEV--SGALKTLAVSLSKIANDLRLLSSGPRAGLGEINL-PANQPGSSIMPGKV 320
Query: 294 NPDGAELV 301
NP E V
Sbjct: 321 NPVIPEAV 328
>gnl|CDD|176464 cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase
(ASL)_subgroup 1. This subgroup contains bacterial and
archeal proteins similar to ASL, a member of the Lyase
class I family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. ASL catalyzes two steps in the de novo purine
biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and, the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP).
Length = 387
Score = 78.7 bits (195), Expect = 3e-15
Identities = 75/255 (29%), Positives = 116/255 (45%), Gaps = 22/255 (8%)
Query: 54 LAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSRDLED-IHMNIEARLTSL---IGSIA 109
AK G+I +E A++I + K E V ++E ++ A +T++ G
Sbjct: 31 WAKLGVIPAEAAEEIRKKAK-FDVERVK-------EIEAETKHDVIAFVTAIAEYCGEAG 82
Query: 110 GKMHTARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTA 169
+H + +D V L L ++E I DLK+LL +L KA EH +T+M G TH A
Sbjct: 83 RYIHFGLTSSDVVDTALALQLREALDIILKDLKELLEVLKKKALEHKDTVMVGRTHGIHA 142
Query: 170 QPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPID-RHFTAKELGFR 228
+P TFG + F R + R ++ ER+ + A + + A++LG +
Sbjct: 143 EPTTFGLKFALWYAEFKRHLERLKEARERILVGKISGAVGTYANLGPEVEERVAEKLGLK 202
Query: 229 -EPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWSTPQFNFVRLSDAFS---T 284
EP V RD E LS A+ A + ++A EI + + + FS
Sbjct: 203 PEPIST---QVIQRDRHAEYLSTLALIASTLEKIATEIRHLQRTEVL--EVEEPFSKGQK 257
Query: 285 GSSIMPQKRNPDGAE 299
GSS MP KRNP +E
Sbjct: 258 GSSAMPHKRNPILSE 272
>gnl|CDD|30463 COG0114, FumC, Fumarase [Energy production and conversion].
Length = 462
Score = 70.6 bits (173), Expect = 1e-12
Identities = 85/371 (22%), Positives = 147/371 (39%), Gaps = 68/371 (18%)
Query: 58 GIISSEEAQKIIEGLKVIRAEIVDGSF---VF---SRDLEDIHMN--IEARLTSLIGSIA 109
G++ E+A II + A D F V+ S ++++N I R + L+G
Sbjct: 62 GLLDPEKADAIIAAADEVLAGKHDDHFPLDVWQTGSGTQSNMNVNEVIANRASELLGGEL 121
Query: 110 GKMHT---------ARSRNDQVALDLRLWIKEKTLEITNDL----KKLLTILLDKAEEHH 156
G ++S ND + + L + N L K L+ L KAEE
Sbjct: 122 GSKKPVHPNDHVNMSQSSNDTFPTAMHI---AAVLAVVNRLIPALKHLIKTLAAKAEEFA 178
Query: 157 NTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPI 216
+ + G THLQ A P+T G Y + R S+ L E +G A+ GT
Sbjct: 179 DVVKIGRTHLQDATPLTLGQEFSGYAAQLEHALERIEASLPHLYELAIGGTAV-GTGLNA 237
Query: 217 DRHFTAK---------ELGFREPTRNSIDSVSDRDFILECLSHSAI--CAMHMSRLAEEI 265
F K L F N ++++ D ++E + A+ A+ + ++A +I
Sbjct: 238 HPEFGEKVAEELAELTGLPFV-TAPNKFEALAAHDALVE--ASGALRTLAVSLMKIANDI 294
Query: 266 -ILWSTPQFNFVRLS-DAFSTGSSIMPQKRNPDGAELVRAKTGRI--NGALLSL------ 315
L S P+ + GSSIMP K NP E + ++ N A ++
Sbjct: 295 RWLGSGPRCGLGEIELPENEPGSSIMPGKVNPTQCEALTMVAAQVIGNDAAIAFAGSQGN 354
Query: 316 --LTIMKGLPLAYSKDMQEDKEPVFDALETLQIIILAISAM----IEDLTVNKDRLQEAA 369
L + K P+ ++ L++++++ A+ + I + N++R++E
Sbjct: 355 FELNVFK--PVI-----------AYNFLQSVRLLADAMRSFADHCIVGIEPNEERIKELL 401
Query: 370 TKSHSTATDLA 380
+S T L
Sbjct: 402 ERSLMLVTALN 412
>gnl|CDD|37911 KOG2700, KOG2700, KOG2700, Adenylosuccinate lyase [Nucleotide
transport and metabolism].
Length = 481
Score = 58.8 bits (142), Expect = 3e-09
Identities = 60/276 (21%), Positives = 95/276 (34%), Gaps = 21/276 (7%)
Query: 136 EITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDS 195
I L ++ L A+++ G THLQ AQ TFG +++ RD+ RF +
Sbjct: 127 LILPYLAGVIDRLSQFADKYKEKPTLGRTHLQPAQLTTFGKRMCLWIQELLRDLERFHRA 186
Query: 196 IERLDECPLGAAALAGTSFP-----------IDRHFTAKELGFREPTRNSIDSVSDRDFI 244
+ L A SF KELGF + R
Sbjct: 187 RTDVRFRGLKGATGTQASFLSLFLGDMDKVEKLDSLVTKELGFVPMYIVT-GQTYSRKTD 245
Query: 245 LECLSHSAICAMHMSRLAEEIILWSTPQFNFVRLSDAFS---TGSSIMPQKRNPDGAELV 301
E ++ A + A +I L + F + + F GSS MP KRNP E +
Sbjct: 246 AEEVAPLASLGATAHKYATDIRLLA----KFAEVEEPFEAHQIGSSAMPYKRNPMRCERI 301
Query: 302 RAKTGRINGALLSLLTIMKGLPLAYSKDMQEDKEPVF-DALETLQIIILAISAMIEDLTV 360
+ + + L + D ++ V DA T + + ++E L V
Sbjct: 302 TSLARHLRPYVTQALNTASVQWHERTLDDSANRRIVLPDAFLTADGNLGTLLNILEGLVV 361
Query: 361 NKDRLQEAATKSH-STATDLADWLVSHAGLPFREAH 395
++ + + AGL +EAH
Sbjct: 362 YPKVIERNIRDELPFMVLENIIMALVKAGLSRQEAH 397
>gnl|CDD|176465 cd01362, Fumarase_classII, Class II fumarases. This subgroup
contains Escherichia coli fumarase C, human
mitochondrial fumarase, and related proteins. It is a
member of the Lyase class I family. Members of this
family for the most part catalyze similar
beta-elimination reactions in which a C-N or C-O bond is
cleaved with the release of fumarate as one of the
products. These proteins are active as tetramers. The
four active sites of the homotetrameric enzyme are each
formed by residues from three different subunits.
Fumarase catalyzes the reversible hydration/dehydration
of fumarate to L-malate during the Krebs cycle.
Length = 455
Score = 58.3 bits (142), Expect = 4e-09
Identities = 53/179 (29%), Positives = 77/179 (43%), Gaps = 21/179 (11%)
Query: 134 TLEITNDL----KKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDI 189
L + L K L+ L KA+E + + G THLQ A P+T G Y I
Sbjct: 149 ALALQERLLPALKHLIDALDAKADEFKDIVKIGRTHLQDATPLTLGQEFSGYAAQLEHAI 208
Query: 190 SRFFDSIERLDECPLGAAALAGTSFPIDRHFTAK---------ELGFREPTRNSIDSVSD 240
+R ++ RL E LG A+ GT F K L F N ++++
Sbjct: 209 ARIEAALPRLYELALGGTAV-GTGLNAHPGFAEKVAAELAELTGLPFV-TAPNKFEALAA 266
Query: 241 RDFILECLSHSAI--CAMHMSRLAEEI-ILWSTPQFNFVRLS-DAFSTGSSIMPQKRNP 295
D ++E + A+ A+ + ++A +I L S P+ LS GSSIMP K NP
Sbjct: 267 HDALVE--ASGALKTLAVSLMKIANDIRWLGSGPRCGLGELSLPENEPGSSIMPGKVNP 323
>gnl|CDD|36531 KOG1317, KOG1317, KOG1317, Fumarase [Energy production and
conversion].
Length = 487
Score = 57.7 bits (139), Expect = 7e-09
Identities = 49/179 (27%), Positives = 74/179 (41%), Gaps = 15/179 (8%)
Query: 135 LEITNDL----KKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDIS 190
EI + L L L K++E + I G TH Q A P+T G YV+ +
Sbjct: 178 TEINSRLIPALTNLRDALEAKSKEFKDIIKIGRTHTQDAVPLTLGQEFSGYVQQVTNGLQ 237
Query: 191 RFFDSIERLDECPLGAAALAGTSFPIDRHF-------TAKELGFREPTR-NSIDSVSDRD 242
R ++ RL + G A+ GT + F A+ G T N ++++ D
Sbjct: 238 RVAATLPRLYQLAQGGTAV-GTGLNTRKGFAEKIAARVAELTGLPFVTAPNKFEALAAHD 296
Query: 243 FILECLSHSAICAMHMSRLAEEI-ILWSTPQFNFVRLS-DAFSTGSSIMPQKRNPDGAE 299
++E A+ + ++A +I L S P+ L GSSIMP K NP E
Sbjct: 297 AMVEVSGALNTIAVSLMKIANDIRFLGSGPRCGLGELMLPENEPGSSIMPGKVNPTQCE 355
>gnl|CDD|176471 cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate lyase
(ASL)_subgroup 2. This subgroup contains mainly
eukaryotic proteins similar to ASL, a member of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. ASL catalyzes two steps in the
de novo purine biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and, the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP). ASL deficiency has
been linked to several pathologies including psychomotor
retardation with autistic features, epilepsy and muscle
wasting.
Length = 436
Score = 42.7 bits (101), Expect = 2e-04
Identities = 43/177 (24%), Positives = 66/177 (37%), Gaps = 32/177 (18%)
Query: 141 LKKLLTI---LLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVE---MFGRDISRFFD 194
L KL + L + A E+ + GFTH Q AQ T G +++ M R++ R D
Sbjct: 116 LPKLAAVIDRLAEFALEYKDLPTLGFTHYQPAQLTTVGKRACLWIQDLLMDLRNLERLRD 175
Query: 195 SIERLDECPLGAAALAGTS------FPIDRH-------FTAKELGFREPTRNSIDSVSDR 241
+ G GT F D K+ GF++ R
Sbjct: 176 DL-----RFRGVKGTTGTQASFLDLFEGDHDKVEALDELVTKKAGFKK-VYPVTGQTYSR 229
Query: 242 DFILECLSHSAICAMHMSRLAEEIILWSTPQFNFVRLSDAFST---GSSIMPQKRNP 295
++ L+ + ++A +I L + N + + F GSS MP KRNP
Sbjct: 230 KVDIDVLNALSSLGATAHKIATDIRLLA----NLKEVEEPFEKGQIGSSAMPYKRNP 282
>gnl|CDD|176470 cd01598, PurB, PurB_like adenylosuccinases (adenylsuccinate lyase,
ASL). This subgroup contains EcASL, the product of the
purB gene in Escherichia coli, and related proteins. It
is a member of the Lyase class I family of the Lyase_I
superfamily. Members of the Lyase class I family
function as homotetramers to catalyze similar
beta-elimination reactions in which a Calpha-N or
Calpha-O bond is cleaved with the subsequent release of
fumarate as one of the products. The four active sites
of the homotetrameric enzyme are each formed by residues
from three different subunits. ASL catalyzes two
non-sequential steps in the de novo purine biosynthesis
pathway: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and; the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP).
Length = 425
Score = 37.2 bits (87), Expect = 0.010
Identities = 37/175 (21%), Positives = 59/175 (33%), Gaps = 37/175 (21%)
Query: 141 LKKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLD 200
LK+++ L A+E+ + M TH Q A P T G +V R + IE L
Sbjct: 125 LKEIIDSLKKLAKEYADVPMLSRTHGQPATPTTLGKELAVFVYRLERQY-KQLKQIEIL- 182
Query: 201 ECPLGAAALAGT---------SFP-IDRHFTAKE------LGFREPTRNSIDSVSDRDFI 244
G ++P +D ++ L + T + D+I
Sbjct: 183 ------GKFNGAVGNFNAHLVAYPDVDWRKFSEFFVTSLGLTWNPYTTQ----IEPHDYI 232
Query: 245 LE---CLSHSAICAMHMSRLAEEIILWSTPQFNFVRL-SDAFSTGSSIMPQKRNP 295
E L+ + + R +W + + GSS MP K NP
Sbjct: 233 AELFDALARINTILIDLCR-----DIWGYISLGYFKQKVKKGEVGSSTMPHKVNP 282
>gnl|CDD|31094 COG0751, GlyS, Glycyl-tRNA synthetase, beta subunit [Translation,
ribosomal structure and biogenesis].
Length = 691
Score = 35.2 bits (81), Expect = 0.038
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 12/62 (19%)
Query: 60 ISSEEAQKIIEG-LKVIRAEIVDGSFVFSRDLEDIHMNIEARLTSL--------IGSIAG 110
++ + IIEG KV+RA + D F F DL+ +E+RL L +G++A
Sbjct: 308 GEPKDPENIIEGNEKVLRARLSDAEFFFKEDLKK---PLESRLPKLKTVTFHEKLGTLAD 364
Query: 111 KM 112
K+
Sbjct: 365 KV 366
>gnl|CDD|146884 pfam04461, DUF520, Protein of unknown function (DUF520). Family of
uncharacterized proteins.
Length = 160
Score = 30.1 bits (69), Expect = 1.4
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 12/57 (21%)
Query: 26 MEKINVSI---DFDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKII-----EGLKV 74
+ K V + DF K + G V + KQG I E A+KI+ LKV
Sbjct: 67 LIKRGVDLKALDFGK---VEKASGKTVKQEVKLKQG-IDQELAKKIVKLIKDSKLKV 119
>gnl|CDD|34064 COG4342, COG4342, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 291
Score = 28.0 bits (62), Expect = 5.3
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 52 TMLAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSRDLEDIHMNIEAR 100
L +GIIS E A+K+ + LKV ++ VD ++ E+I E
Sbjct: 89 KFLTSRGIISEEFAEKLRKPLKVKKSNGVD---LYIPSDEEIRATEELA 134
>gnl|CDD|33995 COG4273, COG4273, Uncharacterized conserved protein [Function
unknown].
Length = 135
Score = 27.6 bits (61), Expect = 7.7
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 188 DISRFFDSIERLDECPLGAAA--LAGTSFPIDRHFTAKELGFRE 229
D +R I LD CPL A LA D H T +LG ++
Sbjct: 62 DAARSGRRILALDGCPLRCATKCLAEAGVQADVHLTITDLGIKK 105
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.320 0.133 0.382
Gapped
Lambda K H
0.267 0.0863 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,480,813
Number of extensions: 284051
Number of successful extensions: 682
Number of sequences better than 10.0: 1
Number of HSP's gapped: 657
Number of HSP's successfully gapped: 32
Length of query: 473
Length of database: 6,263,737
Length adjustment: 97
Effective length of query: 376
Effective length of database: 4,167,664
Effective search space: 1567041664
Effective search space used: 1567041664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.3 bits)