RPSBLAST alignment of GI: 254780370 and protein with PDBid: 3gtd
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, cytoplasm, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii} Length = 482
Score = 249 bits (638), Expect = 8e-67
Identities = 67/385 (17%), Positives = 129/385 (33%), Gaps = 41/385 (10%)
Query: 55 AKQGIISSEEAQKIIEGLKVIRAEIVDGSFVF----SRDLEDIHMNIEARLTSLIGSIAG 110
+ G + + A I + + I A + +F + +MN+ + S+
Sbjct: 81 YEFGDLEYKIATSIDKAIDRILAGEFEDNFPLVVWQTGSGTQTNMNMNEVIASIANEELT 140
Query: 111 -------------KMHTARSRNDQVALDLRLWIKEKTLE-ITNDLKKLLTILLDKAEEHH 156
++ +S ND + + T + + L LLT L DK+++
Sbjct: 141 GKKGGKFPVHPNDHVNKGQSSNDSFPTAMHIATVLATKQQLIPALNNLLTYLQDKSKDWD 200
Query: 157 NTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPI 216
I G THLQ A P+T Y+ + R D+++++ G A+
Sbjct: 201 KIIKIGRTHLQDATPLTLKQEFSGYITQIEYALERIEDALKKVYLLAQGGTAVGTGINSK 260
Query: 217 DRHFTAKELGFRE-------PTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWS 269
E N +S++ D ++E A+ + ++A +I L
Sbjct: 261 IGFDIKFAQKVAEFTQQPFKTAPNKFESLAAHDALVEFSGTLNTIAVSLMKIANDIRLLG 320
Query: 270 TPQFNFVRLSD--AFSTGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYS 327
+ + GSSIMP K NP E + ++ G +++ L +
Sbjct: 321 SGPRCGLGELHLPENEPGSSIMPGKVNPTQVEALTMVCTQVMGNHVTVTIAGSNGHLELN 380
Query: 328 KDMQEDKEPVFDALETLQIIILAISA-MIEDLTVNKDRLQEAATKS------------HS 374
+ ++E L + + ++ L N R+ KS +
Sbjct: 381 VFKPVIIYNILQSIELLSDSVNSFVTHCVKGLEPNIARINTLRDKSLMLVTVLNPHIGYD 440
Query: 375 TATDLADWLVSHAGLPFREAHYITG 399
A +A G+ +EA
Sbjct: 441 NAAKIAKEAH-KYGITLKEAAKKLN 464