BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780370|ref|YP_003064783.1| argininosuccinate lyase [Candidatus Liberibacter asiaticus str. psy62] (473 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780370|ref|YP_003064783.1| argininosuccinate lyase [Candidatus Liberibacter asiaticus str. psy62] Length = 473 Score = 978 bits (2528), Expect = 0.0, Method: Compositional matrix adjust. Identities = 473/473 (100%), Positives = 473/473 (100%) Query: 1 MSKKIKSNEVNQMWGGRFSSSPSWIMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGII 60 MSKKIKSNEVNQMWGGRFSSSPSWIMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGII Sbjct: 1 MSKKIKSNEVNQMWGGRFSSSPSWIMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGII 60 Query: 61 SSEEAQKIIEGLKVIRAEIVDGSFVFSRDLEDIHMNIEARLTSLIGSIAGKMHTARSRND 120 SSEEAQKIIEGLKVIRAEIVDGSFVFSRDLEDIHMNIEARLTSLIGSIAGKMHTARSRND Sbjct: 61 SSEEAQKIIEGLKVIRAEIVDGSFVFSRDLEDIHMNIEARLTSLIGSIAGKMHTARSRND 120 Query: 121 QVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMA 180 QVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMA Sbjct: 121 QVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMA 180 Query: 181 YVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDRHFTAKELGFREPTRNSIDSVSD 240 YVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDRHFTAKELGFREPTRNSIDSVSD Sbjct: 181 YVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDRHFTAKELGFREPTRNSIDSVSD 240 Query: 241 RDFILECLSHSAICAMHMSRLAEEIILWSTPQFNFVRLSDAFSTGSSIMPQKRNPDGAEL 300 RDFILECLSHSAICAMHMSRLAEEIILWSTPQFNFVRLSDAFSTGSSIMPQKRNPDGAEL Sbjct: 241 RDFILECLSHSAICAMHMSRLAEEIILWSTPQFNFVRLSDAFSTGSSIMPQKRNPDGAEL 300 Query: 301 VRAKTGRINGALLSLLTIMKGLPLAYSKDMQEDKEPVFDALETLQIIILAISAMIEDLTV 360 VRAKTGRINGALLSLLTIMKGLPLAYSKDMQEDKEPVFDALETLQIIILAISAMIEDLTV Sbjct: 301 VRAKTGRINGALLSLLTIMKGLPLAYSKDMQEDKEPVFDALETLQIIILAISAMIEDLTV 360 Query: 361 NKDRLQEAATKSHSTATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQCELAKLPLAML 420 NKDRLQEAATKSHSTATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQCELAKLPLAML Sbjct: 361 NKDRLQEAATKSHSTATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQCELAKLPLAML 420 Query: 421 QQISPVITSAVYDILKVESSISSRKSFGGTCAAEVLKQVTYWRNRIQNIPKKI 473 QQISPVITSAVYDILKVESSISSRKSFGGTCAAEVLKQVTYWRNRIQNIPKKI Sbjct: 421 QQISPVITSAVYDILKVESSISSRKSFGGTCAAEVLKQVTYWRNRIQNIPKKI 473 >gi|254780974|ref|YP_003065387.1| adenylosuccinate lyase [Candidatus Liberibacter asiaticus str. psy62] Length = 435 Score = 55.5 bits (132), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 94/358 (26%), Positives = 147/358 (41%), Gaps = 32/358 (8%) Query: 54 LAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSRDLE---DIHMNIEARLTSL---IGS 107 LAK G+I + ++ I E + + F R +E I ++ A LT L IG Sbjct: 34 LAKLGVIPEKSSKNIWEKGR-------NAVFNVDRIMELDSIIKHDVIAFLTHLAEIIGP 86 Query: 108 IAGKMHTARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQ 167 A +H + +D + + + T + D+ +LL L +A E+ +T+ G +H Sbjct: 87 DARFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGI 146 Query: 168 TAQPVTFG-HHCMAYVEMFGRDISRFFDSIERLDECPL-GAAALAGTSFPIDRHFTAKEL 225 A+P TFG MAY E F R R + E + C + G+ P A + Sbjct: 147 HAEPTTFGLKLAMAYAE-FSRSRKRLLTAREEIAVCAISGSVGTFSNIHPYVEQHVADAM 205 Query: 226 GFREPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEII-LWSTPQFNFVRLSDAFST 284 G + +S V RD S + A + R+A EI L T Sbjct: 206 GLKTDPISS--QVIARDRHAMYFSVLGVIASSIERVATEIRHLQRTEILEVEEFFHPGQK 263 Query: 285 GSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSKDMQEDK-EPVF--DAL 341 GSS MP KRNP E + + I ++ M+ + L + +D+ E V DA Sbjct: 264 GSSSMPHKRNPILTENLTGLSRLIRS---HVIPAMENVALWHERDISHSSVERVIGPDAT 320 Query: 342 ETLQIIILAISAMIEDLTVN----KDRLQEAATKSHSTATDLADWLVSHAGLPFREAH 395 L + + +IE+L V KD L++ HS LA ++ AG+ EA+ Sbjct: 321 IHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLA---LTQAGVSREEAY 375 >gi|254780190|ref|YP_003064603.1| fumarate hydratase [Candidatus Liberibacter asiaticus str. psy62] Length = 463 Score = 52.4 bits (124), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 76/335 (22%), Positives = 128/335 (38%), Gaps = 49/335 (14%) Query: 97 IEARLTSLIGSIAGK---------MHTARSRNDQVALDLRLWIKEKTLE-ITNDLKKLLT 146 I R ++G + G ++ +S ND + + E+ + + L+ L Sbjct: 110 ISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHV 169 Query: 147 ILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGA 206 L K + + I G TH Q A P+T G Y I R +++ L E G Sbjct: 170 ALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGG 229 Query: 207 AALA-GTSFPIDRHFTAKELGFREPTRNSIDSVSDRDFI--------LECLSHSAIC--- 254 A+ G + P+ GF E +I ++ FI L C A C Sbjct: 230 TAVGTGLNTPV---------GFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGA 280 Query: 255 ----AMHMSRLAEEI-ILWSTPQFNFVRLS-DAFSTGSSIMPQKRNPDGAELVRAKTGRI 308 A + ++A +I L S P+ L GSSIMP K NP E + I Sbjct: 281 INTSATALFKIANDIRFLGSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHI 340 Query: 309 --NGALLSLLTIMKGLPLAYSKDMQEDKEPVFDALETLQIIILAISAM----IEDLTVNK 362 N A ++ L K M ++ L+++Q++ +I + IE + K Sbjct: 341 FGNHAAITFANSQGHFELNVYKPMI-----AYNVLQSIQLLSDSIDSFTINCIEGIQARK 395 Query: 363 DRLQEAATKSHSTATDLADWL-VSHAGLPFREAHY 396 + +Q + +S T L + +A + ++AH+ Sbjct: 396 ENIQLSLNRSLMLVTALTSKIGYDNASMIAKKAHH 430 >537021.9.peg.409_1 Length = 242 Score = 26.2 bits (56), Expect = 1.1, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 8/61 (13%) Query: 245 LECLSHSAICAMHMS-RLAEEIILWSTPQFNFVRLSDAFSTGSSIMPQKRNPDGAELVRA 303 L CL+H+ A MS R+ E I WS LSD + Q + P+ +++ +A Sbjct: 65 LLCLTHTKAAAAEMSHRVLEIITAWS-------HLSDEILSAEITKIQGKKPNKSDMSKA 117 Query: 304 K 304 + Sbjct: 118 R 118 >gi|254780723|ref|YP_003065136.1| hypothetical protein CLIBASIA_03050 [Candidatus Liberibacter asiaticus str. psy62] Length = 137 Score = 24.6 bits (52), Expect = 3.5, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 6/50 (12%) Query: 359 TVNKDRLQEAATK---SHSTA---TDLADWLVSHAGLPFREAHYITGCTV 402 T + L+EA K +H T D L+S +GLP + HY G V Sbjct: 54 TKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCV 103 >gi|254780524|ref|YP_003064937.1| flagellar hook-associated protein FlgK [Candidatus Liberibacter asiaticus str. psy62] Length = 480 Score = 23.1 bits (48), Expect = 9.2, Method: Compositional matrix adjust. Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%) Query: 18 FSSSPSWIMEKINVSIDFDKKLFEQDILGSKV--HTTMLAKQGIISSEEAQKI 68 +++SP+ + K+ S++ K +DILG V + + + S+ E QKI Sbjct: 96 YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148 >gi|254780821|ref|YP_003065234.1| FolC bifunctional protein [Candidatus Liberibacter asiaticus str. psy62] Length = 429 Score = 23.1 bits (48), Expect = 9.3, Method: Compositional matrix adjust. Identities = 14/36 (38%), Positives = 19/36 (52%) Query: 25 IMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGII 60 I+EK+ VS+ L + ILG+ V K GII Sbjct: 138 IIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGII 173 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.133 0.382 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 282,054 Number of Sequences: 1233 Number of extensions: 11113 Number of successful extensions: 35 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 26 Number of HSP's gapped (non-prelim): 8 length of query: 473 length of database: 328,796 effective HSP length: 77 effective length of query: 396 effective length of database: 233,855 effective search space: 92606580 effective search space used: 92606580 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 40 (20.0 bits)