BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780370|ref|YP_003064783.1| argininosuccinate lyase
[Candidatus Liberibacter asiaticus str. psy62]
         (473 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780370|ref|YP_003064783.1| argininosuccinate lyase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 473

 Score =  978 bits (2528), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/473 (100%), Positives = 473/473 (100%)

Query: 1   MSKKIKSNEVNQMWGGRFSSSPSWIMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGII 60
           MSKKIKSNEVNQMWGGRFSSSPSWIMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGII
Sbjct: 1   MSKKIKSNEVNQMWGGRFSSSPSWIMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGII 60

Query: 61  SSEEAQKIIEGLKVIRAEIVDGSFVFSRDLEDIHMNIEARLTSLIGSIAGKMHTARSRND 120
           SSEEAQKIIEGLKVIRAEIVDGSFVFSRDLEDIHMNIEARLTSLIGSIAGKMHTARSRND
Sbjct: 61  SSEEAQKIIEGLKVIRAEIVDGSFVFSRDLEDIHMNIEARLTSLIGSIAGKMHTARSRND 120

Query: 121 QVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMA 180
           QVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMA
Sbjct: 121 QVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMA 180

Query: 181 YVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDRHFTAKELGFREPTRNSIDSVSD 240
           YVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDRHFTAKELGFREPTRNSIDSVSD
Sbjct: 181 YVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDRHFTAKELGFREPTRNSIDSVSD 240

Query: 241 RDFILECLSHSAICAMHMSRLAEEIILWSTPQFNFVRLSDAFSTGSSIMPQKRNPDGAEL 300
           RDFILECLSHSAICAMHMSRLAEEIILWSTPQFNFVRLSDAFSTGSSIMPQKRNPDGAEL
Sbjct: 241 RDFILECLSHSAICAMHMSRLAEEIILWSTPQFNFVRLSDAFSTGSSIMPQKRNPDGAEL 300

Query: 301 VRAKTGRINGALLSLLTIMKGLPLAYSKDMQEDKEPVFDALETLQIIILAISAMIEDLTV 360
           VRAKTGRINGALLSLLTIMKGLPLAYSKDMQEDKEPVFDALETLQIIILAISAMIEDLTV
Sbjct: 301 VRAKTGRINGALLSLLTIMKGLPLAYSKDMQEDKEPVFDALETLQIIILAISAMIEDLTV 360

Query: 361 NKDRLQEAATKSHSTATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQCELAKLPLAML 420
           NKDRLQEAATKSHSTATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQCELAKLPLAML
Sbjct: 361 NKDRLQEAATKSHSTATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQCELAKLPLAML 420

Query: 421 QQISPVITSAVYDILKVESSISSRKSFGGTCAAEVLKQVTYWRNRIQNIPKKI 473
           QQISPVITSAVYDILKVESSISSRKSFGGTCAAEVLKQVTYWRNRIQNIPKKI
Sbjct: 421 QQISPVITSAVYDILKVESSISSRKSFGGTCAAEVLKQVTYWRNRIQNIPKKI 473


>gi|254780974|ref|YP_003065387.1| adenylosuccinate lyase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 435

 Score = 55.5 bits (132), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 147/358 (41%), Gaps = 32/358 (8%)

Query: 54  LAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSRDLE---DIHMNIEARLTSL---IGS 107
           LAK G+I  + ++ I E  +       +  F   R +E    I  ++ A LT L   IG 
Sbjct: 34  LAKLGVIPEKSSKNIWEKGR-------NAVFNVDRIMELDSIIKHDVIAFLTHLAEIIGP 86

Query: 108 IAGKMHTARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQ 167
            A  +H   + +D +     + +   T  +  D+ +LL  L  +A E+ +T+  G +H  
Sbjct: 87  DARFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGI 146

Query: 168 TAQPVTFG-HHCMAYVEMFGRDISRFFDSIERLDECPL-GAAALAGTSFPIDRHFTAKEL 225
            A+P TFG    MAY E F R   R   + E +  C + G+        P      A  +
Sbjct: 147 HAEPTTFGLKLAMAYAE-FSRSRKRLLTAREEIAVCAISGSVGTFSNIHPYVEQHVADAM 205

Query: 226 GFREPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEII-LWSTPQFNFVRLSDAFST 284
           G +    +S   V  RD      S   + A  + R+A EI  L  T              
Sbjct: 206 GLKTDPISS--QVIARDRHAMYFSVLGVIASSIERVATEIRHLQRTEILEVEEFFHPGQK 263

Query: 285 GSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSKDMQEDK-EPVF--DAL 341
           GSS MP KRNP   E +   +  I      ++  M+ + L + +D+     E V   DA 
Sbjct: 264 GSSSMPHKRNPILTENLTGLSRLIRS---HVIPAMENVALWHERDISHSSVERVIGPDAT 320

Query: 342 ETLQIIILAISAMIEDLTVN----KDRLQEAATKSHSTATDLADWLVSHAGLPFREAH 395
             L   +  +  +IE+L V     KD L++     HS    LA   ++ AG+   EA+
Sbjct: 321 IHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLA---LTQAGVSREEAY 375


>gi|254780190|ref|YP_003064603.1| fumarate hydratase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 463

 Score = 52.4 bits (124), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 128/335 (38%), Gaps = 49/335 (14%)

Query: 97  IEARLTSLIGSIAGK---------MHTARSRNDQVALDLRLWIKEKTLE-ITNDLKKLLT 146
           I  R   ++G + G          ++  +S ND     + +   E+ +  +   L+ L  
Sbjct: 110 ISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHV 169

Query: 147 ILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGA 206
            L  K  +  + I  G TH Q A P+T G     Y       I R   +++ L E   G 
Sbjct: 170 ALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGG 229

Query: 207 AALA-GTSFPIDRHFTAKELGFREPTRNSIDSVSDRDFI--------LECLSHSAIC--- 254
            A+  G + P+         GF E    +I  ++   FI        L C    A C   
Sbjct: 230 TAVGTGLNTPV---------GFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGA 280

Query: 255 ----AMHMSRLAEEI-ILWSTPQFNFVRLS-DAFSTGSSIMPQKRNPDGAELVRAKTGRI 308
               A  + ++A +I  L S P+     L       GSSIMP K NP   E +      I
Sbjct: 281 INTSATALFKIANDIRFLGSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHI 340

Query: 309 --NGALLSLLTIMKGLPLAYSKDMQEDKEPVFDALETLQIIILAISAM----IEDLTVNK 362
             N A ++         L   K M       ++ L+++Q++  +I +     IE +   K
Sbjct: 341 FGNHAAITFANSQGHFELNVYKPMI-----AYNVLQSIQLLSDSIDSFTINCIEGIQARK 395

Query: 363 DRLQEAATKSHSTATDLADWL-VSHAGLPFREAHY 396
           + +Q +  +S    T L   +   +A +  ++AH+
Sbjct: 396 ENIQLSLNRSLMLVTALTSKIGYDNASMIAKKAHH 430


>537021.9.peg.409_1 
          Length = 242

 Score = 26.2 bits (56), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 8/61 (13%)

Query: 245 LECLSHSAICAMHMS-RLAEEIILWSTPQFNFVRLSDAFSTGSSIMPQKRNPDGAELVRA 303
           L CL+H+   A  MS R+ E I  WS        LSD   +      Q + P+ +++ +A
Sbjct: 65  LLCLTHTKAAAAEMSHRVLEIITAWS-------HLSDEILSAEITKIQGKKPNKSDMSKA 117

Query: 304 K 304
           +
Sbjct: 118 R 118


>gi|254780723|ref|YP_003065136.1| hypothetical protein CLIBASIA_03050 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 137

 Score = 24.6 bits (52), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 6/50 (12%)

Query: 359 TVNKDRLQEAATK---SHSTA---TDLADWLVSHAGLPFREAHYITGCTV 402
           T  +  L+EA  K   +H      T   D L+S +GLP  + HY  G  V
Sbjct: 54  TKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCV 103


>gi|254780524|ref|YP_003064937.1| flagellar hook-associated protein FlgK [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 480

 Score = 23.1 bits (48), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 18  FSSSPSWIMEKINVSIDFDKKLFEQDILGSKV--HTTMLAKQGIISSEEAQKI 68
           +++SP+  + K+  S++   K   +DILG  V  +   + +    S+ E QKI
Sbjct: 96  YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148


>gi|254780821|ref|YP_003065234.1| FolC bifunctional protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 429

 Score = 23.1 bits (48), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 25  IMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGII 60
           I+EK+ VS+     L  + ILG+ V      K GII
Sbjct: 138 IIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGII 173


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.133    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 282,054
Number of Sequences: 1233
Number of extensions: 11113
Number of successful extensions: 35
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 26
Number of HSP's gapped (non-prelim): 8
length of query: 473
length of database: 328,796
effective HSP length: 77
effective length of query: 396
effective length of database: 233,855
effective search space: 92606580
effective search space used: 92606580
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 40 (20.0 bits)