HHsearch alignment for GI: 254780371 and conserved domain: PRK11165
>PRK11165 diaminopimelate decarboxylase; Provisional.
Probab=100.00 E-value=0 Score=754.68 Aligned_cols=389 Identities=32% Similarity=0.541 Sum_probs=347.3
Q ss_pred ECCCCHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHC
Q ss_conf 87842999999749978997799999999999986144797899964107999999999973992898689998652212
Q gi|254780371|r 13 AENVSLEKLAHVVQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEGELRRALAA 92 (431)
Q Consensus 13 i~~~~l~~La~~~gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~S~~El~~al~~ 92 (431)
T Consensus 4 ~~~~~l~~la~~yGTP~yVyd~~~i~~~~~~l~~-~~----~i~YAvKAN~~~~il~~l~~~G~g~DvaS~gEl~~al~a 78 (412)
T PRK11165 4 LTAENLLRLPAEFGTPVWVYDADIIRRQIAQLKQ-FD----VIRFAQKACSNIHILRLMREQGVKVDAVSLGEIERALAA 78 (412)
T ss_pred CCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHC-CC----CEEEEHHHCCCHHHHHHHHHCCCCEEEECHHHHHHHHHC
T ss_conf 8889999999986998799869999999998626-68----248862648889999999984996688799999999975
Q ss_pred CCCC----CCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 5784----312444775420124444206872333322024676877411334421589987237786744333223344
Q gi|254780371|r 93 PVPA----ERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKE 168 (431)
Q Consensus 93 G~~~----~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~ 168 (431)
T Consensus 79 G~~~~~~~~~Iif~g~~k~~~~l~~a~~~gv~-in~ds~~eL~~i~~~~----~~~~V~lRiNP~~~~~~~~~~~tg~~~ 153 (412)
T PRK11165 79 GYSPGTEPDDIVFTADLIDRATLARVSELKIP-VNAGSIDMLDQLGQVS----PGHRVWLRINPGFGHGHSQKTNTGGEN 153 (412)
T ss_pred CCCCCCCCCCEEECCCCCCHHHHHHHHHCCCE-EECCCHHHHHHHHHHC----CCCCEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 99989985523877865799999999984997-8228789999998646----688469995688687766433468875
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf 45688711113457776415632200233556415644204899999999887653102666526880687300026654
Q gi|254780371|r 169 DKFGIPIHQIHSLYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDH 248 (431)
Q Consensus 169 sKFGi~~~~~~~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~ 248 (431)
T Consensus 154 sKFGi~~~~~~~~~~~~~~~-~l~~~GlH~HiGS~i-~~~~~~~~~~~~~~---~~~~~g~~~~~idiGGGfgv~Y~~~~ 228 (412)
T PRK11165 154 SKHGIWHEDLPAALAVIQRY-GLKLVGIHMHIGSGV-DYGHLEQVCGAMVR---QVIELGQDIEAISAGGGLSIPYRSGE 228 (412)
T ss_pred CCCCCCHHHHHHHHHHHHHC-CCCEEEEEEECCCCC-CHHHHHHHHHHHHH---HHHHHCCCCCEEEECCCCCCCCCCCC
T ss_conf 55678999999999999867-997898889538887-76999999999999---99980887315761586664788898
Q ss_pred CCCCHHHHHHHHHHH---HCC---CCCEEEEEECCEECCCCCEEEEEEEEECCCCCCCCEEECCCCCCCCCCHHHCCCCC
Q ss_conf 553114565556542---102---45303441011120366325888764034689742200553000110011102465
Q gi|254780371|r 249 RPPSSSDYASLIHQY---FGN---LQCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMNDFMRPTLYDAYHE 322 (431)
Q Consensus 249 ~~~~~~~~~~~i~~~---~~~---~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~vD~g~~~~~~p~~~~~~~~ 322 (431)
T Consensus 229 ~~~d~~~~~~~~~~~~~~i~~~~~~~~~l~iEPGR~lva~aG~llt~V~~~K~~~~~~~~~vD~Gmn~l~rpalyga~h~ 308 (412)
T PRK11165 229 EPVDTEHYFGLWNAARKQIARHLGHPVKLEIEPGRFLVAESGVLVTQVRAVKQMGSRHFVLVDAGFNDLMRPAMYGSYHH 308 (412)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEECCCCEEEEEEEEEEECCCCCEEEECCCHHCCCCCHHCCCCCE
T ss_conf 89899999999999999999852998469982572673155289999999997287658997254201543022134542
Q ss_pred CCCCCCC---CCCCCEEEEEEEEEECCCCCEEEEE-------EECCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEE
Q ss_conf 3222234---6777615899981000566665621-------00566888889999679702333402778898665999
Q gi|254780371|r 323 INYIVNP---AGDRLHIHADIVGPICETGDFIALN-------RKIALPRPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIM 392 (431)
Q Consensus 323 i~~~~~~---~~~~~~~~~~i~G~~C~~~D~l~~~-------~~lp~l~~GD~l~i~~~GAY~~s~~s~fn~~p~p~~v~ 392 (431)
T Consensus 309 i~~~~~~~~~~~~~~~~~~~v~Gp~Ces~D~l~~~~~~~i~~~~LP~l~~GD~l~i~~~GAY~~smss~yN~rp~paeVl 388 (412)
T PRK11165 309 ISVLAADGRSLEHAPLVETVVAGPLCESGDVFTQQEGGVVETRALPQVKVGDYLVLHDTGAYGASMSSNYNSRPLLPEVL 388 (412)
T ss_pred EEEECCCCCCCCCCCCCEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHCCCCCCCCCCEEE
T ss_conf 68825667776568755689886798862433436665314444888999899999168816176602125999880899
Q ss_pred EECCEEEEEEECCCHHHHHHCCCC
Q ss_conf 988968999824898899730888
Q gi|254780371|r 393 VNGSQFHIIRPRMTFQELIELDSI 416 (431)
Q Consensus 393 v~~g~~~~ir~ret~ed~~~~~~~ 416 (431)
T Consensus 389 v~~g~~~lir~ret~edl~~~e~~ 412 (412)
T PRK11165 389 FDNGQARLIRRRQTIEELLALELL 412 (412)
T ss_pred EECCEEEEEEECCCHHHHHHHCCC
T ss_conf 999999999808999999740319