HHsearch alignment for GI: 254780371 and conserved domain: PRK11930
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional.
Probab=99.69 E-value=5.1e-13 Score=108.54 Aligned_cols=342 Identities=17% Similarity=0.162 Sum_probs=209.1
Q ss_pred CCCCHHHHHHHCCCC----EEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCC----CHHHHHHHHHCCC-CEEEECHH
Q ss_conf 784299999974997----89977999999999999861447978999641079----9999999997399-28986899
Q gi|254780371|r 14 ENVSLEKLAHVVQTP----FYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANS----NQAVIKTLAHLGS-GLDIVSEG 84 (431)
Q Consensus 14 ~~~~l~~La~~~gTP----~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~----~~~il~~l~~~G~-g~dv~S~~ 84 (431)
T Consensus 445 r~~~~e~i~~~l~~~~h~T~lEIdL~Ai~~N~~~~r~~l~-p~tkimaVVKAdAYGhGa~evAk~l~~~gvd~~aVA~~~ 523 (824)
T PRK11930 445 RKFQFEQISERLELKVHETILEINLDAIVHNLNYYRSKLK-PETKMMCMVKAFAYGAGSYEIAKTLQEHRVDYLAVAVAD 523 (824)
T ss_pred CCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHCC-CCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEHH
T ss_conf 4566899999996455885899988999999999997479-997699999634466349999999998499999992599
Q ss_pred HHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCC-EEEEEEEECCCCCCCCCCCC
Q ss_conf 98652212578431244477542012444420687233332202467687741133442-15899872377867443332
Q gi|254780371|r 85 ELRRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKK-APIAFRVNPDINANTHKKIS 163 (431)
Q Consensus 85 El~~al~~G~~~~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~-~~I~lRinp~~~~~~~~~~~ 163 (431)
T Consensus 524 Ea~~LR~~Gi~~pIlvl-~~--~~~~~~~~~~~~l-~~~v~s~~~l~~l~~~~~~~~~~~~~vHlki------------D 587 (824)
T PRK11930 524 EGSELRKAGITLPIMVM-NP--ELTSFKTIIDYKL-EPEVYSFHLLDALIKEAEKKGLTNFPIHIKI------------D 587 (824)
T ss_pred HHHHHHHCCCCCCEEEE-CC--CHHHHHHHHHHCC-CCEECCHHHHHHHHHHHHHCCCCCCEEEEEE------------C
T ss_conf 99999974999987993-48--6677999998089-1107879999999999997299974089997------------5
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCC-CCCHHH-HHHHHHHHHHHHHHHCCCCCCCE---EEECC
Q ss_conf 23344456887111134577764156322002335564156-442048-99999999887653102666526---88068
Q gi|254780371|r 164 TGKKEDKFGIPIHQIHSLYAYASTLPGVKISGVDMHIGSQI-DQIESF-HKAFKLLRDLTQQLRSNGHNIQH---IDVGG 238 (431)
Q Consensus 164 tg~~~sKFGi~~~~~~~~~~~~~~~~~l~l~GlH~H~GS~~-~~~~~~-~~~~~~~~~~~~~l~~~g~~~~~---ldiGG 238 (431)
T Consensus 588 TGM--~RlGf~~~e~~~l~~~l~~~~~l~~~gi~SHfa~aD~~~~~~~t~~Q~~~F~~~~~~l~~~~~~~~~~H~aNSag 665 (824)
T PRK11930 588 TGM--HRLGFEPEDIPELIERLKKQSAVIVRSVFSHLAGSDDPQHDDFTRQQIELFDKASEELQSALNYKPLRHILNTSG 665 (824)
T ss_pred CCC--CCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHH
T ss_conf 999--978599899999999998289985536674588889999857999999999999999987168876278607898
Q ss_pred CCCCC-CCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEECCCCCEEEEEEEEECCCC-------CCCCEEECCCCCC
Q ss_conf 73000-266545531145655565421024530344101112036632588876403468-------9742200553000
Q gi|254780371|r 239 GLGIA-YHSDHRPPSSSDYASLIHQYFGNLQCKIILEPGRFLVADVGILVTKVISIKKSA-------DKTFVILDVAMND 310 (431)
Q Consensus 239 Gf~i~-y~~~~~~~~~~~~~~~i~~~~~~~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~-------~~~~~~vD~g~~~ 310 (431)
T Consensus 666 i~~~p~~~~DmVR~Gi~LYG~~-----p~-~-------~~~~Lkpv~sl~s~I~~ik~v~~Ge~VgYg~t~~a~-~~~~I 731 (824)
T PRK11930 666 IERFPGAQYDMVRLGIGLYGVS-----AS-G-------NQIKLRNVSTLKTTILQIRDIPKGDTVGYSRKGRVE-KPSRI 731 (824)
T ss_pred HHCCCCCCCCEEEECCEEECCC-----CC-C-------CCCCCEEEEEEEEEEEEEEEECCCCCCCCCCCEECC-CCCEE
T ss_conf 8659844698685283516869-----88-8-------777966608999999999983856986799955828-99689
Q ss_pred CCCCHHHCCCCCCCCCCCCCCC--CCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCHHH-HHHCCCCCCCC
Q ss_conf 1100111024653222234677--76158999810005666656210056688888999967970233-34027788986
Q gi|254780371|r 311 FMRPTLYDAYHEINYIVNPAGD--RLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGA-VQSGTYNSRLL 387 (431)
Q Consensus 311 ~~~p~~~~~~~~i~~~~~~~~~--~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~-s~~s~fn~~p~ 387 (431)
T Consensus 732 AtipiGYADG~~R-~lsn~~g~Vli~G~~~pivGrIc--MD~~mvDvt~i~~~~GDeV~l~G~~-i~~~elA~~~~TI~- 806 (824)
T PRK11930 732 ATIPIGYADGLNR-HLGNGVGYVLVNGKKAPIVGNIC--MDMCMIDVTDIHANEGDKVIIFGEE-LPVTELADALNTIP- 806 (824)
T ss_pred EEEEECCCCCCCC-CCCCCCCEEEECCEEEEEEEEEE--CCEEEEECCCCCCCCCCEEEEECCC-CCHHHHHHHHCCCH-
T ss_conf 9995231027662-25799838999999922564873--3569998889989999999998999-99999999859910-
Q ss_pred CEEEEEE
Q ss_conf 6599998
Q gi|254780371|r 388 IPEIMVN 394 (431)
Q Consensus 388 p~~v~v~ 394 (431)
T Consensus 807 -YEilt~ 812 (824)
T PRK11930 807 -YEILTS 812 (824)
T ss_pred -HEEECC
T ss_conf -123237