HHsearch alignment for GI: 254780371 and conserved domain: PRK11930

>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional.
Probab=99.69  E-value=5.1e-13  Score=108.54  Aligned_cols=342  Identities=17%  Similarity=0.162  Sum_probs=209.1

Q ss_pred             CCCCHHHHHHHCCCC----EEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCC----CHHHHHHHHHCCC-CEEEECHH
Q ss_conf             784299999974997----89977999999999999861447978999641079----9999999997399-28986899
Q gi|254780371|r   14 ENVSLEKLAHVVQTP----FYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANS----NQAVIKTLAHLGS-GLDIVSEG   84 (431)
Q Consensus        14 ~~~~l~~La~~~gTP----~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~----~~~il~~l~~~G~-g~dv~S~~   84 (431)
T Consensus       445 r~~~~e~i~~~l~~~~h~T~lEIdL~Ai~~N~~~~r~~l~-p~tkimaVVKAdAYGhGa~evAk~l~~~gvd~~aVA~~~  523 (824)
T PRK11930        445 RKFQFEQISERLELKVHETILEINLDAIVHNLNYYRSKLK-PETKMMCMVKAFAYGAGSYEIAKTLQEHRVDYLAVAVAD  523 (824)
T ss_pred             CCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHCC-CCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEHH
T ss_conf             4566899999996455885899988999999999997479-997699999634466349999999998499999992599


Q ss_pred             HHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCC-EEEEEEEECCCCCCCCCCCC
Q ss_conf             98652212578431244477542012444420687233332202467687741133442-15899872377867443332
Q gi|254780371|r   85 ELRRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKK-APIAFRVNPDINANTHKKIS  163 (431)
Q Consensus        85 El~~al~~G~~~~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~-~~I~lRinp~~~~~~~~~~~  163 (431)
T Consensus       524 Ea~~LR~~Gi~~pIlvl-~~--~~~~~~~~~~~~l-~~~v~s~~~l~~l~~~~~~~~~~~~~vHlki------------D  587 (824)
T PRK11930        524 EGSELRKAGITLPIMVM-NP--ELTSFKTIIDYKL-EPEVYSFHLLDALIKEAEKKGLTNFPIHIKI------------D  587 (824)
T ss_pred             HHHHHHHCCCCCCEEEE-CC--CHHHHHHHHHHCC-CCEECCHHHHHHHHHHHHHCCCCCCEEEEEE------------C
T ss_conf             99999974999987993-48--6677999998089-1107879999999999997299974089997------------5


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCC-CCCHHH-HHHHHHHHHHHHHHHCCCCCCCE---EEECC
Q ss_conf             23344456887111134577764156322002335564156-442048-99999999887653102666526---88068
Q gi|254780371|r  164 TGKKEDKFGIPIHQIHSLYAYASTLPGVKISGVDMHIGSQI-DQIESF-HKAFKLLRDLTQQLRSNGHNIQH---IDVGG  238 (431)
Q Consensus       164 tg~~~sKFGi~~~~~~~~~~~~~~~~~l~l~GlH~H~GS~~-~~~~~~-~~~~~~~~~~~~~l~~~g~~~~~---ldiGG  238 (431)
T Consensus       588 TGM--~RlGf~~~e~~~l~~~l~~~~~l~~~gi~SHfa~aD~~~~~~~t~~Q~~~F~~~~~~l~~~~~~~~~~H~aNSag  665 (824)
T PRK11930        588 TGM--HRLGFEPEDIPELIERLKKQSAVIVRSVFSHLAGSDDPQHDDFTRQQIELFDKASEELQSALNYKPLRHILNTSG  665 (824)
T ss_pred             CCC--CCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHH
T ss_conf             999--978599899999999998289985536674588889999857999999999999999987168876278607898


Q ss_pred             CCCCC-CCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEECCCCCEEEEEEEEECCCC-------CCCCEEECCCCCC
Q ss_conf             73000-266545531145655565421024530344101112036632588876403468-------9742200553000
Q gi|254780371|r  239 GLGIA-YHSDHRPPSSSDYASLIHQYFGNLQCKIILEPGRFLVADVGILVTKVISIKKSA-------DKTFVILDVAMND  310 (431)
Q Consensus       239 Gf~i~-y~~~~~~~~~~~~~~~i~~~~~~~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~-------~~~~~~vD~g~~~  310 (431)
T Consensus       666 i~~~p~~~~DmVR~Gi~LYG~~-----p~-~-------~~~~Lkpv~sl~s~I~~ik~v~~Ge~VgYg~t~~a~-~~~~I  731 (824)
T PRK11930        666 IERFPGAQYDMVRLGIGLYGVS-----AS-G-------NQIKLRNVSTLKTTILQIRDIPKGDTVGYSRKGRVE-KPSRI  731 (824)
T ss_pred             HHCCCCCCCCEEEECCEEECCC-----CC-C-------CCCCCEEEEEEEEEEEEEEEECCCCCCCCCCCEECC-CCCEE
T ss_conf             8659844698685283516869-----88-8-------777966608999999999983856986799955828-99689


Q ss_pred             CCCCHHHCCCCCCCCCCCCCCC--CCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCHHH-HHHCCCCCCCC
Q ss_conf             1100111024653222234677--76158999810005666656210056688888999967970233-34027788986
Q gi|254780371|r  311 FMRPTLYDAYHEINYIVNPAGD--RLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGA-VQSGTYNSRLL  387 (431)
Q Consensus       311 ~~~p~~~~~~~~i~~~~~~~~~--~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~-s~~s~fn~~p~  387 (431)
T Consensus       732 AtipiGYADG~~R-~lsn~~g~Vli~G~~~pivGrIc--MD~~mvDvt~i~~~~GDeV~l~G~~-i~~~elA~~~~TI~-  806 (824)
T PRK11930        732 ATIPIGYADGLNR-HLGNGVGYVLVNGKKAPIVGNIC--MDMCMIDVTDIHANEGDKVIIFGEE-LPVTELADALNTIP-  806 (824)
T ss_pred             EEEEECCCCCCCC-CCCCCCCEEEECCEEEEEEEEEE--CCEEEEECCCCCCCCCCEEEEECCC-CCHHHHHHHHCCCH-
T ss_conf             9995231027662-25799838999999922564873--3569998889989999999998999-99999999859910-


Q ss_pred             CEEEEEE
Q ss_conf             6599998
Q gi|254780371|r  388 IPEIMVN  394 (431)
Q Consensus       388 p~~v~v~  394 (431)
T Consensus       807 -YEilt~  812 (824)
T PRK11930        807 -YEILTS  812 (824)
T ss_pred             -HEEECC
T ss_conf             -123237