HHsearch alignment for GI: 254780371 and conserved domain: cd06824

>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.
Probab=98.88  E-value=7.7e-08  Score=73.34  Aligned_cols=189  Identities=17%  Similarity=0.169  Sum_probs=132.2

Q ss_pred             HHHHHHHHHHHHHHCCC--CCCEEEEEEECCCCHHHHHHHHHCCCC-EEEECHHHHHH-HHHC-CCCCCCEEECCCCCCC
Q ss_conf             99999999999986144--797899964107999999999973992-89868999865-2212-5784312444775420
Q gi|254780371|r   34 TTAIEKNYLTFSNAFDG--MDTMVCYALKANSNQAVIKTLAHLGSG-LDIVSEGELRR-ALAA-PVPAERIVFSGVGKTI  108 (431)
Q Consensus        34 ~~~i~~n~~~l~~a~~~--~~~~i~yAvKaN~~~~il~~l~~~G~g-~dv~S~~El~~-al~~-G~~~~~Ii~~g~~k~~  108 (431)
T Consensus         6 l~~i~~~I~~a~~~~gR~~~~V~LiaVSK~~~~e~I-~~a~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsN   84 (224)
T cd06824           6 LAQVKQRIAQAAKQAGRDPSSVQLLAVSKTKPADAI-REAYAAGQRHFGENYVQEALEKIEALRDLQDIEWHFIGPIQSN   84 (224)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHH-HHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCHH
T ss_conf             999999999999983879576599998899899999-9999869952478709999999998533789559997755201


Q ss_pred             HHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf             12444420687233332202467687741133442158998723778674433322334445688711113457776415
Q gi|254780371|r  109 DEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYASTL  188 (431)
Q Consensus       109 ~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~~~~  188 (431)
T Consensus        85 K-vk~i~~~~~~IhSvDs~kla~~l~~~~~~~~~~~~vliQVN~------------s~E~~K~G~~~~e~~~~~~~i~~~  151 (224)
T cd06824          85 K-TKLIAENFDWVHSVDRLKIAKRLNDQRPAGLPPLNVCIQVNI------------SGEDSKSGVAPEDAAELAEAISQL  151 (224)
T ss_pred             H-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEEC------------CCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf             6-799998521897645099999999999972998628999853------------785002698999999999999956


Q ss_pred             CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf             6322002335564156442048999999998876531026665268806
Q gi|254780371|r  189 PGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVG  237 (431)
Q Consensus       189 ~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiG  237 (431)
T Consensus       152 ~~l~i~GLMt-i~p~~~d~~~~r~~F~~l~~l~~~l~~~~~~~~~LSMG  199 (224)
T cd06824         152 PNLRLRGLMA-IPAPTDDEAAQRAAFKRLRQLFDQLKKQYPDLDTLSMG  199 (224)
T ss_pred             CCCCEEEEEE-ECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCC
T ss_conf             9984266776-57999885789999999999999998517998957770