HHsearch alignment for GI: 254780371 and conserved domain: cd06830
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase. This subfamily includes plants and biosynthetic prokaryotic arginine decarboxylases (ADC, EC 4.1.1.19). ADC is involved in the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. It catalyzes the decarboxylation of L-arginine to agmatine, which is then hydrolyzed to putrescine by agmatinase. ADC is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Homodimer formation and the presence of both PLP and Mg2+ cofactors may be required for catalytic activity. Prokaryotic ADCs (biodegradative), which are fold type I PLP-dependent enzymes, are not included in this family.
Probab=100.00 E-value=0 Score=624.12 Aligned_cols=368 Identities=22% Similarity=0.270 Sum_probs=318.8
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHCCCC--------CCEEEEEEECCCCHHHHHHHHHCC----CCEEEECHHHHHHHH
Q ss_conf 97499789977999999999999861447--------978999641079999999999739----928986899986522
Q gi|254780371|r 23 HVVQTPFYCYSTTAIEKNYLTFSNAFDGM--------DTMVCYALKANSNQAVIKTLAHLG----SGLDIVSEGELRRAL 90 (431)
Q Consensus 23 ~~~gTP~yV~d~~~i~~n~~~l~~a~~~~--------~~~i~yAvKaN~~~~il~~l~~~G----~g~dv~S~~El~~al 90 (431)
T Consensus 1 ~~yGTPLyV~d~~~ir~~~~~~~~aF~~~~~~~~y~~~~~~~YAvKAN~n~~vl~~l~~~G~~~~~G~DvvS~gEl~~al 80 (409)
T cd06830 1 RGYGLPLLLRFPDILRHRIERLNAAFAKAIEEYGYKGKYQGVYPIKVNQQREVVEEIVKAGKRYNIGLEAGSKPELLAAL 80 (409)
T ss_pred CCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHHCCCCCCCCEEEECHHHHHHHH
T ss_conf 99899799970999999999999999999997287876289998720680999999997397558836896899999999
Q ss_pred HCCCCCCCEEECCCCCCCHHHHHHHHCCCC----CCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 125784312444775420124444206872----3333220246768774113344215899872377867443332233
Q gi|254780371|r 91 AAPVPAERIVFSGVGKTIDEIDLALQSGIY----CFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGK 166 (431)
Q Consensus 91 ~~G~~~~~Ii~~g~~k~~~~l~~ai~~gv~----~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~ 166 (431)
T Consensus 81 ~ag~~p~~ii~~~~~K~~~~i~~a~~~~~~~~~v~iviDs~~El~~i~~~a~~~~~~~~v~lRinp~~~~~~~-~~~t~g 159 (409)
T cd06830 81 ALLKTPDALIICNGYKDDEYIELALLARKLGHNVIIVIEKLSELDLILELAKKLGVKPLLGVRIKLASKGSGK-WQESGG 159 (409)
T ss_pred HCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCC-CCCCCC
T ss_conf 7699999699949989999999999847567653664599999999999999709995078998536688876-411378
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCC-CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCC
Q ss_conf 4445688711113457776415632-200233556415644204899999999887653102666526880687300026
Q gi|254780371|r 167 KEDKFGIPIHQIHSLYAYASTLPGV-KISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYH 245 (431)
Q Consensus 167 ~~sKFGi~~~~~~~~~~~~~~~~~l-~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~ 245 (431)
T Consensus 160 ~~sKFGi~~~~~~~~~~~~~~~~~~~~l~glH~HIGSQi~d~~~~~~a~~~~~~~~~~l~~~g~~l~~ldlGGGfgi~Y~ 239 (409)
T cd06830 160 DRSKFGLTASEILEVVEKLKEAGMLDRLKLLHFHIGSQITDIRRIKSALREAARIYAELRKLGANLRYLDIGGGLGVDYD 239 (409)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCC
T ss_conf 63135999999999999998579977556899852789888899999999999999999984899526750675554568
Q ss_pred CCCCCC------CHHHHHHHHHHHHCC----C---CCEEEEEECCEECCCCCEEEEEEEEECCCCCCCCEEECCCCCCCC
Q ss_conf 654553------114565556542102----4---530344101112036632588876403468974220055300011
Q gi|254780371|r 246 SDHRPP------SSSDYASLIHQYFGN----L---QCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMNDFM 312 (431)
Q Consensus 246 ~~~~~~------~~~~~~~~i~~~~~~----~---~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~vD~g~~~~~ 312 (431)
T Consensus 240 ~~~~~~~~~~~~dl~~~a~~i~~~~~~~~~~~~~~~p~li~EPGR~iVa~AGvll~~V~~vK~~~~-~~~i~~~~~~~l~ 318 (409)
T cd06830 240 GSRSSSDSSFNYSLEEYANDIVKTVKEICDEAGVPHPTIVTESGRAIVAHHSVLIFEVLGVKRLAD-WYFCNFSLFQSLP 318 (409)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHEEEEEEEEEEEEEEEEECCC-EEEEECCCCCCCC
T ss_conf 767787654102299999999999999999729999759981473210100289999899975152-6875032335565
Q ss_pred CCHHHCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEE---------EECCCCC--CCCEEEEECCCCHHHHHHCC
Q ss_conf 001110246532222346777615899981000566665621---------0056688--88899996797023334027
Q gi|254780371|r 313 RPTLYDAYHEINYIVNPAGDRLHIHADIVGPICETGDFIALN---------RKIALPR--PGDLLYIEKTGAYGAVQSGT 381 (431)
Q Consensus 313 ~p~~~~~~~~i~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~---------~~lp~l~--~GD~l~i~~~GAY~~s~~s~ 381 (431)
T Consensus 319 d~~~~~~~~~~~~~-~~~~~~~~~~~~v~G~~CES~d~~~~~~~~~~~~~~~~lp~~~~~egdlla~~~aGAYg~sMsSn 397 (409)
T cd06830 319 DSWAIDQLFPIMPL-HRLNEKPTRRAVLGDITCDSDGKIDSFIDPPDILPTLPLHPLRKDEPYYLGFFLVGAYQEILGDL 397 (409)
T ss_pred CHHHHCCCCEEEEC-CCCCCCCCEEEEEEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHCC
T ss_conf 53450565526653-55778870578998536014980322056643223466776678998789993367024787666
Q ss_pred CCCCCCCEEEEE
Q ss_conf 788986659999
Q gi|254780371|r 382 YNSRLLIPEIMV 393 (431)
Q Consensus 382 fn~~p~p~~v~v 393 (431)
T Consensus 398 YN~~g~~~~v~v 409 (409)
T cd06830 398 HNLFGDTNAVHV 409 (409)
T ss_pred CCCCCCCCEEEC
T ss_conf 568999887769