HHsearch alignment for GI: 254780371 and conserved domain: cd07376
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase. This family includes eukaryotic D-serine dehydratases (DSD), cryptic DSDs from bacteria, D-threonine aldolases (D-TA), low specificity D-TAs, and similar uncharacterized proteins. DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Members of this family are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity to AR, it is poss
Probab=99.76 E-value=3.2e-15 Score=123.54 Aligned_cols=313 Identities=17% Similarity=0.142 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHH
Q ss_conf 99999999998614479789996410799999999997399-28986899986522125784312444775420124444
Q gi|254780371|r 36 AIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGS-GLDIVSEGELRRALAAPVPAERIVFSGVGKTIDEIDLA 114 (431)
Q Consensus 36 ~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~-g~dv~S~~El~~al~~G~~~~~Ii~~g~~k~~~~l~~a 114 (431)
T Consensus 1 Ale~Ni~~m~~~~~~~g~~lRPH~KThK~~~i~~~ql~~Ga~gi~~atl~EAe~~~~~G~~--dIl~a~pi~~~~~l~rl 78 (345)
T cd07376 1 ALEANISRMAARARASGVRLRPHVKTHKSPELAQRQLAAGARGVTVATLAEAETFAEAGVK--DILMAYPLVGPAAIARL 78 (345)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECHHCCHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCC--CEEEECCCCCHHHHHHH
T ss_conf 9789999999999976997667750004899999998679970999469999999976998--38996688998999999
Q ss_pred ---HHCCCC-CCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC--HHHHHHHHHC
Q ss_conf ---206872-3333220246768774113344215899872377867443332233444568871111--3457776415
Q gi|254780371|r 115 ---LQSGIY-CFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQI--HSLYAYASTL 188 (431)
Q Consensus 115 ---i~~gv~-~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~--~~~~~~~~~~ 188 (431)
T Consensus 79 ~~l~~~~~~i~~~VDs~~~~~~l~~~a~~~~~~~~V~ievD~G------------~--~R~Gv~~~~~~~l~l~~~i~~~ 144 (345)
T cd07376 79 AGLLRQEAEFHVLVDSPEALAALAAFAAAHGVRLRVMLEVDVG------------G--HRSGVRPEEAAALALADAVQAS 144 (345)
T ss_pred HHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEEECCC------------C--CCCCCCCCHHHHHHHHHHHHCC
T ss_conf 9986349838999708999999999998659827899997889------------9--8588888779999999998539
Q ss_pred CCCCHHHHHHHHHH--CCCCCHHHHH----HHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 63220023355641--5644204899----99999988765310266652688068730002665455311456555654
Q gi|254780371|r 189 PGVKISGVDMHIGS--QIDQIESFHK----AFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQ 262 (431)
Q Consensus 189 ~~l~l~GlH~H~GS--~~~~~~~~~~----~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~ 262 (431)
T Consensus 145 ~~l~l~G~~~y~Gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~vs~-GgTpt~-~~~~~~~~-------~-- 212 (345)
T cd07376 145 PGLRLAGVMAYEGHIYGAGGAREGAQARDQAVAAVRAAAAAA-ERGLACPTVSG-GGTPTY-QLTAGDRA-------V-- 212 (345)
T ss_pred CCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCEEEC-CCCCCC-EEECCCCC-------C--
T ss_conf 991898999747120699998999999999999999999998-64999888955-788874-10336887-------3--
Q ss_pred HHCCCCCEEEEEECCEE-------------CCCCCEEEEEEEEECCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCCCCC
Q ss_conf 21024530344101112-------------03663258887640346897422005530001100111024653222234
Q gi|254780371|r 263 YFGNLQCKIILEPGRFL-------------VADVGILVTKVISIKKSADKTFVILDVAMNDFMRPTLYDAYHEINYIVNP 329 (431)
Q Consensus 263 ~~~~~~~~l~~EPGR~l-------------va~ag~ll~~V~~vK~~~~~~~~~vD~g~~~~~~p~~~~~~~~i~~~~~~ 329 (431)
T Consensus 213 --------tEl~~G~yvf~D~~~~~~~~~~~~~aa~~v~~Vis~~--~~~~~~~vd~G~kals~d~~~~-~~~-~~~~~p 280 (345)
T cd07376 213 --------TELRAGSYVFMDTGFDTLGACAQRPAAFRVTTVISRP--APTGRAVLDAGWKASSADTAFI-GGG-AVLGRP 280 (345)
T ss_pred --------EEECCCEEEECCHHHCCCCCCCCCCEEEEEEEEEEEC--CCCCEEEECCCCCCCCCCCCCC-CCC-CCCCCC
T ss_conf --------2874634896421320136898433008998666522--8886289886222223313567-888-755897
Q ss_pred CCCCCEEEEEEEEEECCCCCEEEE---EEECCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCEEEEEEE
Q ss_conf 677761589998100056666562---10056688888999967970233340277889866599998896899982
Q gi|254780371|r 330 AGDRLHIHADIVGPICETGDFIAL---NRKIALPRPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMVNGSQFHIIRP 403 (431)
Q Consensus 330 ~~~~~~~~~~i~G~~C~~~D~l~~---~~~lp~l~~GD~l~i~~~GAY~~s~~s~fn~~p~p~~v~v~~g~~~~ir~ 403 (431)
T Consensus 281 -----~~~--~~~~s-~ehg~~~~~~~~~~~~~l~vGd~v~liP~H~-C~----t~~~~~--~~~vv~~~~v~~~Wp 342 (345)
T cd07376 281 -----ELR--AVLLS-EEHEGRSEPLNTPDLDDLPIGDRVFLVPNHA-CE----TVALHD--ELYVVEGGRVAATWP 342 (345)
T ss_pred -----CCE--EEEEC-CCCCEEECCCCCCCCCCCCCCCEEEEEECCC-CH----HHHHCC--EEEEEECCEEEEEEE
T ss_conf -----702--55301-5753045156677778999999999980885-37----777289--899999999999996