Query gi|254780371|ref|YP_003064784.1| diaminopimelate decarboxylase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 431
No_of_seqs 158 out of 3572
Neff 7.5
Searched_HMMs 39220
Date Sun May 29 18:49:52 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780371.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01048 lysA diaminopimelate 100.0 0 0 948.4 34.2 410 5-415 3-431 (431)
2 PRK11165 diaminopimelate decar 100.0 0 0 754.7 32.9 389 13-416 4-412 (412)
3 TIGR03099 dCO2ase_PEP1 pyridox 100.0 0 0 738.7 33.7 385 4-393 1-398 (398)
4 cd06828 PLPDE_III_DapDC Type I 100.0 0 0 721.8 30.5 368 25-393 1-373 (373)
5 COG0019 LysA Diaminopimelate d 100.0 0 0 715.2 32.3 389 2-393 2-394 (394)
6 cd06839 PLPDE_III_Btrk_like Ty 100.0 0 0 697.3 30.7 370 21-393 1-382 (382)
7 PRK08961 bifunctional aspartat 100.0 0 0 696.7 30.0 364 17-394 497-864 (865)
8 cd06843 PLPDE_III_PvsE_like Ty 100.0 0 0 670.3 31.0 366 26-393 1-377 (377)
9 cd06810 PLPDE_III_ODC_DapDC_li 100.0 0 0 667.7 30.6 362 27-393 1-368 (368)
10 cd06840 PLPDE_III_Bif_AspK_Dap 100.0 0 0 668.6 29.5 363 17-393 3-368 (368)
11 cd06836 PLPDE_III_ODC_DapDC_li 100.0 0 0 649.7 31.6 365 26-394 2-378 (379)
12 cd06841 PLPDE_III_MccE_like Ty 100.0 0 0 649.8 30.5 361 21-396 1-378 (379)
13 cd00622 PLPDE_III_ODC Type III 100.0 0 0 635.9 30.0 353 26-393 1-362 (362)
14 cd06842 PLPDE_III_Y4yA_like Ty 100.0 0 0 633.7 29.3 362 18-393 1-423 (423)
15 cd06830 PLPDE_III_ADC Type III 100.0 0 0 624.1 28.7 368 23-393 1-409 (409)
16 cd06831 PLPDE_III_ODC_like_AZI 100.0 0 0 588.2 29.4 353 26-397 12-385 (394)
17 cd06829 PLPDE_III_CANSDC Type 100.0 0 0 588.1 28.2 346 27-394 1-346 (346)
18 KOG0622 consensus 100.0 0 0 524.1 23.7 370 26-412 55-443 (448)
19 pfam02784 Orn_Arg_deC_N Pyrido 100.0 0 0 407.8 19.7 240 33-282 1-245 (245)
20 TIGR01047 nspC carboxynorsperm 100.0 0 0 340.8 20.8 371 26-412 2-401 (403)
21 PRK05354 arginine decarboxylas 100.0 1.5E-44 0 322.8 31.1 420 3-425 27-600 (634)
22 COG1166 SpeA Arginine decarbox 100.0 6.4E-42 0 305.0 30.5 422 2-426 42-620 (652)
23 cd06808 PLPDE_III Type III Pyr 100.0 1.6E-42 0 309.1 15.8 211 37-277 1-211 (211)
24 pfam00278 Orn_DAP_Arg_deC Pyri 99.9 1.2E-24 3.1E-29 187.5 8.8 108 285-393 1-110 (110)
25 cd06818 PLPDE_III_cryptic_DSD 99.9 2.4E-21 6.2E-26 165.1 23.0 329 26-397 2-374 (382)
26 cd06819 PLPDE_III_LS_D-TA Type 99.9 4.4E-20 1.1E-24 156.5 27.9 319 23-400 3-350 (358)
27 cd06820 PLPDE_III_LS_D-TA_like 99.9 1.2E-19 2.9E-24 153.7 27.2 321 25-400 1-345 (353)
28 cd06821 PLPDE_III_D-TA Type II 99.9 3.5E-19 9E-24 150.4 27.4 317 23-399 5-348 (361)
29 cd06812 PLPDE_III_DSD_D-TA_lik 99.9 3E-19 7.6E-24 150.9 22.9 334 23-404 2-370 (374)
30 cd06817 PLPDE_III_DSD Type III 99.9 2.2E-19 5.6E-24 151.8 20.8 339 23-398 2-379 (389)
31 TIGR01273 speA arginine decarb 99.8 2.5E-19 6.3E-24 151.4 14.5 400 25-427 61-621 (657)
32 cd06813 PLPDE_III_DSD_D-TA_lik 99.8 7.6E-17 1.9E-21 134.6 25.4 353 18-403 2-379 (388)
33 cd06815 PLPDE_III_AR_like_1 Ty 99.8 3.8E-17 9.7E-22 136.6 22.3 318 27-384 1-349 (353)
34 cd00430 PLPDE_III_AR Type III 99.8 2E-16 5.1E-21 131.7 25.2 309 29-372 3-333 (367)
35 cd07376 PLPDE_III_DSD_D-TA_lik 99.8 3.2E-15 8.1E-20 123.5 24.8 313 36-403 1-342 (345)
36 PRK00053 alr alanine racemase; 99.7 1E-14 2.6E-19 120.1 20.9 309 30-372 6-330 (360)
37 PRK13340 alanine racemase; Rev 99.7 3E-14 7.7E-19 116.9 22.7 309 16-371 23-368 (404)
38 PRK11930 putative bifunctional 99.7 5.1E-13 1.3E-17 108.5 27.4 342 14-394 445-812 (824)
39 COG3616 Predicted amino acid a 99.7 4.5E-14 1.1E-18 115.7 21.1 323 19-397 10-359 (368)
40 cd06825 PLPDE_III_VanT Type II 99.7 2.4E-13 6.1E-18 110.8 22.6 311 31-372 5-334 (368)
41 cd06814 PLPDE_III_DSD_D-TA_lik 99.7 3.5E-13 9E-18 109.6 23.4 338 23-401 5-374 (379)
42 cd06811 PLPDE_III_yhfX_like Ty 99.6 1.7E-13 4.4E-18 111.7 20.5 324 29-402 30-376 (382)
43 PRK03646 dadX alanine racemase 99.6 3.2E-13 8.2E-18 109.9 20.6 298 28-372 3-325 (355)
44 cd06826 PLPDE_III_AR2 Type III 99.6 2.2E-12 5.7E-17 104.2 23.9 295 31-371 5-330 (365)
45 cd06827 PLPDE_III_AR_proteobac 99.6 9.7E-13 2.5E-17 106.7 20.7 299 30-372 4-324 (354)
46 COG0787 Alr Alanine racemase [ 99.6 2.7E-12 6.9E-17 103.6 22.8 304 30-371 7-328 (360)
47 pfam01168 Ala_racemase_N Alani 99.5 8.9E-13 2.3E-17 106.9 15.3 183 32-238 1-189 (216)
48 COG3457 Predicted amino acid r 99.4 5.2E-11 1.3E-15 94.9 15.2 305 27-371 3-333 (353)
49 TIGR00492 alr alanine racemase 99.4 1.5E-09 3.8E-14 85.0 21.7 317 29-370 5-346 (383)
50 cd06824 PLPDE_III_Yggs_like Py 98.9 7.7E-08 2E-12 73.3 12.7 189 34-237 6-199 (224)
51 cd00635 PLPDE_III_YBL036c_like 98.8 5.7E-07 1.4E-11 67.5 14.3 188 34-237 5-198 (222)
52 COG0325 Predicted enzyme with 98.7 1.1E-06 2.8E-11 65.5 14.3 189 34-238 7-201 (228)
53 cd06822 PLPDE_III_YBL036c_euk 98.4 2.1E-05 5.4E-10 56.7 13.3 187 34-237 5-203 (227)
54 KOG3157 consensus 97.7 0.00032 8.1E-09 48.8 8.7 188 35-242 9-214 (244)
55 TIGR00044 TIGR00044 conserved 97.2 0.00063 1.6E-08 46.8 5.0 169 53-237 42-224 (250)
56 PRK07028 bifunctional hexulose 95.0 0.34 8.6E-06 28.2 10.4 78 25-125 35-113 (429)
57 PRK03562 glutathione-regulated 94.5 0.23 5.8E-06 29.4 7.2 157 64-224 411-586 (615)
58 PRK03659 glutathione-regulated 94.1 0.26 6.5E-06 29.0 6.9 129 65-197 413-560 (602)
59 pfam01261 AP_endonuc_2 Xylose 90.5 0.57 1.4E-05 26.7 4.7 95 177-276 27-124 (201)
60 TIGR01108 oadA oxaloacetate de 90.4 0.7 1.8E-05 26.0 5.2 218 59-292 18-296 (616)
61 cd02930 DCR_FMN 2,4-dienoyl-Co 89.2 1.2 3.1E-05 24.4 5.6 20 219-240 228-247 (353)
62 cd02003 TPP_IolD Thiamine pyro 88.7 1.5 3.7E-05 23.9 5.7 15 106-120 80-94 (205)
63 pfam07745 Glyco_hydro_53 Glyco 88.2 2.2 5.6E-05 22.7 10.1 142 77-264 3-160 (332)
64 cd02803 OYE_like_FMN_family Ol 88.0 0.45 1.1E-05 27.4 2.8 16 172-187 224-239 (327)
65 TIGR01369 CPSaseII_lrg carbamo 88.0 2.2 5.7E-05 22.6 6.4 60 77-148 707-767 (1089)
66 COG1902 NemA NADH:flavin oxido 87.8 1.5 3.9E-05 23.7 5.4 99 127-227 82-212 (363)
67 cd02931 ER_like_FMN Enoate red 86.0 2.8 7.1E-05 22.0 5.9 16 211-226 198-213 (382)
68 PRK13209 L-xylulose 5-phosphat 86.0 2.8 7.3E-05 21.9 6.2 100 169-275 50-158 (283)
69 PRK04452 acetyl-CoA decarbonyl 85.5 3 7.7E-05 21.7 7.3 24 64-87 164-187 (322)
70 COG1797 CobB Cobyrinic acid a, 85.4 3 7.8E-05 21.7 7.1 67 15-81 100-173 (451)
71 PRK02308 uvsE putative UV dama 85.3 2.3 5.8E-05 22.6 5.2 133 122-275 43-188 (316)
72 PRK13347 coproporphyrinogen II 82.5 3.2 8.1E-05 21.6 5.0 42 216-265 189-230 (453)
73 pfam06506 PrpR_N Propionate ca 81.3 4.4 0.00011 20.6 6.6 35 107-141 89-123 (169)
74 pfam04131 NanE Putative N-acet 80.8 4.2 0.00011 20.8 5.1 33 63-95 80-114 (192)
75 cd02932 OYE_YqiM_FMN Old yello 80.6 3.3 8.5E-05 21.5 4.5 16 211-226 201-216 (336)
76 cd02014 TPP_POX Thiamine pyrop 80.1 4.2 0.00011 20.7 4.9 13 253-265 149-161 (178)
77 PRK08208 coproporphyrinogen II 80.0 4.9 0.00012 20.3 6.6 57 216-280 184-245 (436)
78 cd02015 TPP_AHAS Thiamine pyro 79.7 4.9 0.00012 20.3 5.1 13 107-119 83-95 (186)
79 PRK09249 coproporphyrinogen II 79.2 5.1 0.00013 20.2 5.1 28 126-153 119-149 (456)
80 PRK05692 hydroxymethylglutaryl 77.8 5.6 0.00014 19.9 9.1 25 174-199 182-207 (287)
81 PRK08207 coproporphyrinogen II 77.7 5.6 0.00014 19.9 8.4 66 208-277 204-272 (497)
82 TIGR00629 uvde UV damage endon 77.7 2.7 6.9E-05 22.1 3.3 165 90-274 40-219 (345)
83 TIGR03471 HpnJ hopanoid biosyn 77.6 5.7 0.00015 19.9 12.1 18 69-87 113-130 (472)
84 cd04733 OYE_like_2_FMN Old yel 77.5 2.6 6.7E-05 22.2 3.2 15 211-225 196-210 (338)
85 PRK08195 4-hydroxy-2-ketovaler 76.8 6 0.00015 19.7 6.5 28 173-200 170-198 (337)
86 TIGR03234 OH-pyruv-isom hydrox 76.2 6.1 0.00015 19.7 4.7 14 262-275 130-143 (254)
87 PRK08599 coproporphyrinogen II 75.8 6.4 0.00016 19.5 8.2 28 251-278 164-196 (377)
88 PRK09259 putative oxalyl-CoA d 75.6 6.4 0.00016 19.5 5.9 14 365-378 447-460 (572)
89 TIGR01270 Trp_5_monoox tryptop 75.5 0.68 1.7E-05 26.1 -0.3 19 31-49 49-67 (499)
90 TIGR01852 lipid_A_lpxA acyl-[a 75.4 6.5 0.00017 19.5 5.4 64 350-413 127-209 (257)
91 TIGR02632 RhaD_aldol-ADH rhamn 75.3 5.1 0.00013 20.2 4.2 28 363-390 578-606 (709)
92 COG5016 Pyruvate/oxaloacetate 75.2 6.6 0.00017 19.4 6.2 193 83-292 64-301 (472)
93 TIGR02716 C20_methyl_CrtF C-20 74.2 6.8 0.00017 19.4 4.6 33 231-276 151-183 (306)
94 TIGR01016 sucCoAbeta succinyl- 73.9 5.2 0.00013 20.2 3.9 30 16-45 6-39 (389)
95 cd04729 NanE N-acetylmannosami 73.5 6.5 0.00017 19.5 4.3 15 77-91 43-57 (219)
96 cd02010 TPP_ALS Thiamine pyrop 73.2 7.3 0.00019 19.1 5.5 13 107-119 81-93 (177)
97 smart00827 PKS_AT Acyl transfe 72.7 7.6 0.00019 19.0 8.7 28 67-94 72-102 (298)
98 PRK08645 bifunctional homocyst 72.4 7.6 0.0002 19.0 9.8 179 1-203 1-211 (608)
99 PRK12581 oxaloacetate decarbox 72.1 7.8 0.0002 19.0 4.8 40 174-215 190-229 (468)
100 KOG4127 consensus 71.9 7.9 0.0002 18.9 5.1 80 179-266 288-369 (419)
101 cd04735 OYE_like_4_FMN Old yel 71.8 6.1 0.00015 19.7 3.9 19 394-412 327-345 (353)
102 TIGR03394 indol_phenyl_DC indo 70.6 7.3 0.00019 19.1 4.1 41 365-405 423-466 (535)
103 PRK07710 acetolactate synthase 69.9 8.6 0.00022 18.6 5.6 33 122-154 141-176 (571)
104 pfam10113 Fibrillarin_2 Fibril 69.8 8.7 0.00022 18.6 6.4 88 143-261 185-272 (505)
105 TIGR00538 hemN oxygen-independ 68.2 9.4 0.00024 18.4 5.2 48 26-76 113-165 (462)
106 PRK09282 pyruvate carboxylase 67.0 6.3 0.00016 19.6 3.1 14 389-402 468-482 (580)
107 PRK06096 molybdenum transport 67.0 5.8 0.00015 19.8 2.9 15 234-248 144-158 (284)
108 KOG2263 consensus 66.8 9.7 0.00025 18.3 4.0 83 25-108 206-297 (765)
109 PRK06546 pyruvate dehydrogenas 65.7 10 0.00027 18.1 4.2 36 365-403 429-470 (578)
110 PRK06276 acetolactate synthase 65.5 11 0.00027 18.0 4.6 15 364-378 439-453 (586)
111 PRK01130 N-acetylmannosamine-6 64.8 11 0.00028 18.0 5.0 15 111-125 81-95 (222)
112 cd06564 GH20_DspB_LnbB-like Gl 63.8 11 0.00029 17.8 4.8 177 32-268 14-193 (326)
113 pfam00351 Biopterin_H Biopteri 62.9 4.8 0.00012 20.4 1.9 10 251-260 179-188 (309)
114 PRK08611 pyruvate oxidase; Pro 62.5 12 0.0003 17.7 4.7 38 364-404 428-471 (576)
115 TIGR00078 nadC nicotinate-nucl 61.9 8.7 0.00022 18.6 3.0 93 34-128 102-216 (276)
116 TIGR01859 fruc_bis_ald_ fructo 60.5 8 0.0002 18.9 2.6 87 106-202 3-92 (339)
117 pfam00331 Glyco_hydro_10 Glyco 60.2 12 0.0003 17.8 3.5 56 176-239 180-239 (308)
118 PRK09124 pyruvate dehydrogenas 59.7 13 0.00034 17.4 4.3 38 364-401 428-468 (574)
119 COG0635 HemN Coproporphyrinoge 59.6 13 0.00034 17.3 4.8 10 144-153 124-133 (416)
120 PRK06457 pyruvate dehydrogenas 59.4 13 0.00034 17.3 5.4 40 364-403 417-459 (549)
121 PRK12331 oxaloacetate decarbox 58.9 14 0.00035 17.3 4.7 29 174-203 181-209 (463)
122 PRK09057 coproporphyrinogen II 58.9 14 0.00035 17.3 5.0 30 251-280 168-202 (381)
123 COG2100 Predicted Fe-S oxidore 57.8 14 0.00036 17.2 8.7 24 332-355 354-377 (414)
124 PRK07449 2-succinyl-6-hydroxy- 57.6 14 0.00037 17.1 4.3 11 140-150 163-173 (548)
125 pfam02388 FemAB FemAB family. 57.3 6 0.00015 19.7 1.6 11 334-344 350-360 (407)
126 PRK08807 consensus 56.7 15 0.00038 17.0 7.3 57 217-281 147-208 (385)
127 PRK12330 oxaloacetate decarbox 56.6 15 0.00038 17.0 4.7 40 174-215 182-223 (499)
128 PRK13210 putative L-xylulose 5 56.1 15 0.00039 17.0 6.0 98 171-275 47-153 (284)
129 PRK06852 aldolase; Validated 55.9 15 0.00039 16.9 7.6 137 107-264 60-200 (303)
130 TIGR01371 met_syn_B12ind 5-met 55.8 15 0.00039 16.9 5.7 76 26-105 220-309 (778)
131 PRK07418 acetolactate synthase 55.8 15 0.00039 16.9 4.7 37 364-403 454-496 (615)
132 PRK09856 fructoselysine 3-epim 55.7 15 0.00039 16.9 5.4 95 176-275 47-149 (276)
133 TIGR00379 cobB cobyrinic acid 55.2 3.7 9.4E-05 21.2 0.2 233 14-299 102-352 (464)
134 PRK09058 coproporphyrinogen II 54.7 16 0.00041 16.8 4.1 20 31-50 34-53 (447)
135 COG3010 NanE Putative N-acetyl 54.6 16 0.00041 16.8 4.4 18 109-126 89-106 (229)
136 PRK08978 acetolactate synthase 54.2 16 0.00042 16.8 5.0 40 364-403 421-463 (548)
137 COG1477 ApbE Membrane-associat 53.8 12 0.00031 17.6 2.7 124 205-357 170-296 (337)
138 PRK07379 coproporphyrinogen II 53.7 17 0.00042 16.7 8.1 56 217-280 153-213 (399)
139 PRK12344 putative alpha-isopro 53.3 14 0.00036 17.2 3.0 25 174-199 185-210 (530)
140 KOG3820 consensus 53.3 14 0.00035 17.2 2.9 25 384-408 411-437 (461)
141 PRK08629 coproporphyrinogen II 53.2 17 0.00043 16.7 4.9 27 251-277 202-233 (424)
142 pfam04273 DUF442 Putative phos 52.8 13 0.00033 17.4 2.7 85 97-203 7-98 (110)
143 smart00633 Glyco_10 Glycosyl h 52.2 18 0.00045 16.5 3.7 85 130-237 105-193 (254)
144 pfam00724 Oxidored_FMN NADH:fl 51.3 18 0.00046 16.5 3.9 37 190-226 159-205 (336)
145 PRK05222 5-methyltetrahydropte 51.2 11 0.00028 17.9 2.1 79 25-105 201-287 (756)
146 TIGR02295 HpaD 3,4-dihydroxyph 51.0 12 0.00031 17.7 2.3 173 121-306 65-279 (312)
147 PRK08199 acetolactate synthase 50.9 18 0.00047 16.4 5.7 39 365-403 430-471 (553)
148 cd00568 TPP_enzymes Thiamine p 50.4 19 0.00048 16.4 5.4 14 205-218 143-156 (168)
149 TIGR00539 hemN_rel putative ox 49.8 19 0.00049 16.3 4.4 190 10-240 59-270 (371)
150 TIGR01283 nifE nitrogenase MoF 49.2 19 0.0005 16.2 6.4 62 16-77 116-190 (470)
151 COG1082 IolE Sugar phosphate i 49.0 20 0.0005 16.2 6.3 103 170-275 39-146 (274)
152 pfam03328 HpcH_HpaI HpcH/HpaI 49.0 17 0.00044 16.6 2.8 113 11-138 4-140 (221)
153 PRK04036 DNA polymerase II sma 48.9 18 0.00047 16.4 3.0 80 197-278 244-332 (497)
154 TIGR02635 RhaI_grampos L-rhamn 48.6 11 0.00029 17.9 1.8 97 93-202 21-130 (382)
155 cd02002 TPP_BFDC Thiamine pyro 48.6 20 0.00051 16.2 4.4 14 106-119 81-94 (178)
156 KOG1610 consensus 48.1 20 0.00052 16.1 4.0 63 216-283 148-216 (322)
157 cd04731 HisF The cyclase subun 47.6 21 0.00053 16.1 3.8 50 99-148 74-126 (243)
158 PRK06456 acetolactate synthase 47.2 21 0.00053 16.0 5.1 30 122-151 131-163 (572)
159 PRK07789 acetolactate synthase 46.9 21 0.00054 16.0 4.9 28 123-150 158-188 (612)
160 TIGR01591 Fdh-alpha formate de 46.9 18 0.00045 16.5 2.6 129 17-153 86-222 (694)
161 COG1311 HYS2 Archaeal DNA poly 46.7 7.4 0.00019 19.1 0.6 83 197-280 233-320 (481)
162 PRK06048 acetolactate synthase 46.5 21 0.00054 16.0 4.4 28 123-150 134-164 (562)
163 pfam00842 Ala_racemase_C Alani 46.5 21 0.00054 16.0 6.8 35 336-372 60-95 (125)
164 PRK11858 aksA trans-homoaconit 46.4 21 0.00055 16.0 8.5 27 173-200 171-197 (378)
165 PRK05660 coproporphyrinogen II 45.1 22 0.00057 15.8 5.0 59 215-281 143-206 (378)
166 PRK08898 coproporphyrinogen II 44.7 23 0.00058 15.8 5.1 30 251-280 184-218 (393)
167 CHL00099 ilvB acetohydroxyacid 44.3 23 0.00059 15.7 4.9 41 364-404 446-489 (588)
168 pfam01136 Peptidase_U32 Peptid 44.3 23 0.00059 15.7 7.6 83 65-148 5-91 (232)
169 PRK06725 acetolactate synthase 44.1 23 0.00059 15.7 5.1 38 365-405 443-486 (570)
170 COG0191 Fba Fructose/tagatose 44.0 17 0.00042 16.7 2.1 88 18-109 9-112 (286)
171 COG2099 CobK Precorrin-6x redu 43.9 23 0.00059 15.7 5.0 60 65-128 15-75 (257)
172 PRK11036 putative metallothion 43.9 18 0.00047 16.4 2.3 80 18-100 6-96 (256)
173 COG0646 MetH Methionine syntha 43.8 23 0.0006 15.7 6.2 131 114-271 152-290 (311)
174 PRK08322 acetolactate synthase 43.3 24 0.00061 15.6 4.3 40 364-403 426-468 (547)
175 PRK08446 coproporphyrinogen II 43.2 24 0.00061 15.6 8.6 57 216-280 136-197 (351)
176 PRK13306 ulaD 3-keto-L-gulonat 42.4 25 0.00063 15.6 10.5 47 25-76 34-81 (216)
177 PRK13352 thiamine biosynthesis 42.4 25 0.00063 15.6 5.9 33 395-427 370-402 (433)
178 TIGR02090 LEU1_arch isopropylm 42.4 25 0.00063 15.6 3.5 168 56-265 42-245 (371)
179 PRK02621 consensus 42.2 25 0.00063 15.5 5.5 45 99-143 77-123 (254)
180 cd02006 TPP_Gcl Thiamine pyrop 42.0 25 0.00064 15.5 4.3 20 203-222 162-181 (202)
181 PRK09250 fructose-bisphosphate 41.4 25 0.00065 15.4 7.5 195 47-265 28-230 (348)
182 PRK08617 acetolactate synthase 40.9 26 0.00066 15.4 4.4 40 364-403 434-476 (552)
183 COG3867 Arabinogalactan endo-1 40.8 26 0.00066 15.4 7.8 142 76-265 41-207 (403)
184 TIGR00074 hypC_hupF hydrogenas 40.6 26 0.00067 15.4 2.9 28 333-369 27-54 (88)
185 PRK08949 consensus 40.4 26 0.00067 15.4 8.1 56 217-280 145-205 (378)
186 TIGR02471 sucr_syn_bact_C sucr 40.2 26 0.00068 15.3 5.4 23 89-111 172-194 (241)
187 pfam03435 Saccharop_dh Sacchar 40.1 27 0.00068 15.3 3.0 64 78-145 53-119 (384)
188 PRK02145 consensus 40.0 27 0.00068 15.3 5.5 52 98-149 77-131 (257)
189 cd04747 OYE_like_5_FMN Old yel 39.8 27 0.00069 15.3 5.1 41 190-230 160-211 (361)
190 COG3589 Uncharacterized conser 39.6 27 0.00069 15.3 8.5 196 9-241 12-226 (360)
191 TIGR01246 dapE_proteo succinyl 39.6 21 0.00054 16.0 2.1 143 176-318 171-344 (383)
192 PRK09125 DNA ligase; Provision 39.3 27 0.0007 15.2 6.6 27 359-392 245-271 (277)
193 PRK09970 xanthine dehydrogenas 39.1 27 0.00069 15.3 2.6 13 231-243 238-250 (762)
194 COG0177 Nth Predicted EndoIII- 38.8 23 0.00058 15.8 2.2 36 36-74 5-40 (211)
195 pfam00491 Arginase Arginase fa 38.6 28 0.00071 15.2 4.5 106 86-198 133-248 (274)
196 COG0042 tRNA-dihydrouridine sy 38.4 28 0.00072 15.1 6.6 21 14-34 22-42 (323)
197 cd03371 TPP_PpyrDC Thiamine py 38.4 28 0.00072 15.1 4.2 21 94-114 12-32 (188)
198 TIGR00069 hisD histidinol dehy 38.4 28 0.00072 15.1 5.2 34 58-91 33-71 (435)
199 PRK13700 conjugal transfer pro 38.1 4.4 0.00011 20.6 -1.6 28 103-130 195-225 (732)
200 pfam12224 Amidoligase_2 Putati 37.9 24 0.00061 15.6 2.1 51 175-226 87-143 (250)
201 PRK08527 acetolactate synthase 37.7 29 0.00074 15.1 4.4 39 365-403 436-477 (560)
202 TIGR03311 Se_dep_Molyb_1 selen 37.5 23 0.00058 15.8 2.0 60 194-264 354-413 (848)
203 TIGR01212 TIGR01212 radical SA 37.2 29 0.00075 15.0 4.3 95 172-272 161-258 (307)
204 PRK09485 mmuM homocysteine met 36.9 30 0.00076 15.0 10.9 186 6-220 9-242 (308)
205 TIGR03196 pucD xanthine dehydr 36.7 18 0.00046 16.5 1.4 14 389-402 637-652 (768)
206 cd02004 TPP_BZL_OCoD_HPCL Thia 36.6 30 0.00077 15.0 5.1 14 106-119 80-93 (172)
207 pfam08643 DUF1776 Fungal famil 36.5 30 0.00077 14.9 3.8 48 235-282 154-204 (296)
208 PRK09426 methylmalonyl-CoA mut 36.1 31 0.00078 14.9 4.2 15 412-426 610-624 (715)
209 pfam00977 His_biosynth Histidi 35.9 31 0.00079 14.9 3.8 11 230-241 191-201 (229)
210 COG2047 Uncharacterized protei 35.6 31 0.00079 14.9 3.8 89 191-289 87-176 (258)
211 TIGR00299 TIGR00299 conserved 35.6 31 0.0008 14.9 3.2 102 189-296 117-228 (410)
212 KOG0781 consensus 35.5 31 0.0008 14.8 4.6 10 401-410 537-546 (587)
213 cd00983 recA RecA is a bacter 35.3 16 0.0004 16.8 0.9 53 79-131 34-96 (325)
214 COG2040 MHT1 Homocysteine/sele 35.2 32 0.00081 14.8 6.7 86 111-218 140-228 (300)
215 PRK06965 acetolactate synthase 34.7 32 0.00082 14.8 4.5 37 364-403 457-499 (587)
216 TIGR03194 4hydrxCoA_A 4-hydrox 34.5 28 0.00072 15.1 2.1 10 300-309 628-637 (746)
217 TIGR02416 CO_dehy_Mo_lg carbon 34.5 24 0.00061 15.6 1.7 39 141-179 486-524 (775)
218 PRK07092 benzoylformate decarb 34.4 32 0.00083 14.7 4.2 39 364-402 418-459 (521)
219 PRK08155 acetolactate synthase 34.3 33 0.00083 14.7 4.9 42 364-405 439-483 (564)
220 PRK07027 cobalamin biosynthesi 33.8 33 0.00085 14.7 3.2 26 64-89 49-74 (126)
221 PRK07525 sulfoacetaldehyde ace 33.8 33 0.00085 14.7 5.9 13 365-377 456-468 (589)
222 TIGR00625 tfb2 Transcription f 33.7 5.7 0.00015 19.9 -1.6 52 325-380 300-351 (507)
223 TIGR01858 tag_bisphos_ald clas 33.6 33 0.00085 14.6 7.4 73 107-198 4-79 (282)
224 PRK06112 acetolactate synthase 33.5 34 0.00086 14.6 5.3 42 364-405 460-504 (581)
225 pfam00154 RecA recA bacterial 33.3 21 0.00053 16.0 1.2 43 88-130 42-92 (322)
226 pfam02738 Ald_Xan_dh_C2 Molybd 33.2 25 0.00063 15.6 1.6 14 389-402 467-482 (543)
227 PRK10416 cell division protein 33.0 34 0.00087 14.6 3.6 53 362-414 414-486 (499)
228 cd00453 FTBP_aldolase_II Fruct 32.9 34 0.00088 14.6 2.7 18 29-46 18-35 (340)
229 COG2433 Uncharacterized conser 32.6 21 0.00054 16.0 1.2 17 359-375 541-557 (652)
230 cd04730 NPD_like 2-Nitropropan 32.3 35 0.0009 14.5 3.7 83 32-135 36-120 (236)
231 cd00946 FBP_aldolase_IIA Class 32.3 35 0.0009 14.5 2.3 32 110-141 7-40 (345)
232 PRK09197 fructose-bisphosphate 32.2 35 0.0009 14.5 3.9 40 109-150 11-52 (349)
233 PRK04169 geranylgeranylglycery 32.2 29 0.00073 15.1 1.8 10 111-120 24-33 (229)
234 TIGR02050 gshA_cyan_rel unchar 32.1 22 0.00055 15.9 1.1 100 106-220 45-152 (297)
235 COG3605 PtsP Signal transducti 31.8 36 0.00091 14.5 5.7 55 191-248 468-522 (756)
236 pfam03851 UvdE UV-endonuclease 31.7 36 0.00092 14.4 4.7 132 122-275 38-184 (275)
237 cd03312 CIMS_N_terminal_like C 31.6 25 0.00065 15.5 1.4 68 167-235 125-202 (360)
238 TIGR00580 mfd transcription-re 31.6 36 0.00092 14.4 3.7 11 235-245 850-860 (997)
239 COG1770 PtrB Protease II [Amin 31.6 36 0.00092 14.4 3.6 50 364-413 448-514 (682)
240 TIGR01275 ACC_deam_rel pyridox 31.0 37 0.00094 14.4 4.6 113 99-240 34-155 (339)
241 TIGR00635 ruvB Holliday juncti 30.9 26 0.00066 15.4 1.4 162 34-226 9-214 (305)
242 PRK09354 recA recombinase A; P 30.6 37 0.00095 14.3 4.2 75 77-153 37-121 (350)
243 PRK07524 hypothetical protein; 30.5 38 0.00096 14.3 4.3 39 365-403 428-469 (534)
244 PRK13226 phosphoglycolate phos 30.4 38 0.00096 14.3 5.7 11 298-308 180-190 (221)
245 pfam08267 Meth_synt_1 Cobalami 30.3 38 0.00096 14.3 5.4 67 168-235 126-201 (310)
246 PRK02083 imidazole glycerol ph 29.7 39 0.00099 14.2 4.9 45 99-143 77-123 (253)
247 cd00288 Pyruvate_Kinase Pyruva 29.5 39 0.00099 14.2 2.6 32 360-394 374-405 (480)
248 PRK09107 acetolactate synthase 29.4 39 0.001 14.2 6.3 40 364-403 449-491 (594)
249 COG0854 PdxJ Pyridoxal phospha 29.3 39 0.001 14.2 7.0 81 62-152 52-133 (243)
250 PRK13238 tnaA tryptophanase; P 29.3 39 0.001 14.2 6.0 68 173-242 195-272 (461)
251 PRK13487 chemoreceptor glutami 29.1 40 0.001 14.2 2.8 56 258-315 9-69 (201)
252 cd02001 TPP_ComE_PpyrDC Thiami 29.0 40 0.001 14.1 3.9 18 252-269 130-147 (157)
253 TIGR02763 chlamy_scaf scaffold 28.9 19 0.00048 16.4 0.4 51 58-108 5-59 (127)
254 pfam01890 CbiG_C Cobalamin syn 28.9 40 0.001 14.1 3.1 26 63-88 46-71 (121)
255 cd06592 GH31_glucosidase_KIAA1 28.8 40 0.001 14.1 4.9 14 226-239 153-166 (303)
256 pfam01408 GFO_IDH_MocA Oxidore 28.8 40 0.001 14.1 2.6 97 41-147 16-119 (120)
257 PRK13516 carboxylate-amine lig 28.8 40 0.001 14.1 2.7 29 191-221 130-158 (372)
258 PRK04194 hypothetical protein; 28.7 40 0.001 14.1 2.8 47 189-240 110-157 (390)
259 PRK08385 nicotinate-nucleotide 28.4 41 0.001 14.1 9.9 14 234-247 142-155 (279)
260 cd02933 OYE_like_FMN Old yello 28.4 41 0.001 14.1 5.8 16 211-226 199-214 (338)
261 PRK10060 RNase II stability mo 28.2 41 0.001 14.0 4.5 14 361-374 552-565 (663)
262 PRK13305 sgbH 3-keto-L-gulonat 28.1 41 0.001 14.0 5.2 80 25-127 34-114 (220)
263 cd00669 Asp_Lys_Asn_RS_core As 27.4 35 0.00089 14.5 1.6 26 83-110 58-83 (269)
264 PRK06466 acetolactate synthase 27.2 43 0.0011 13.9 4.3 28 123-150 131-161 (574)
265 TIGR00406 prmA ribosomal prote 27.1 22 0.00056 15.9 0.5 45 257-303 272-320 (330)
266 COG1726 NqrA Na+-transporting 26.9 20 0.0005 16.2 0.2 83 340-422 305-396 (447)
267 pfam03737 Methyltransf_6 Demet 26.9 31 0.00078 14.9 1.2 16 337-352 131-146 (154)
268 PRK05628 coproporphyrinogen II 26.9 43 0.0011 13.9 5.1 29 251-279 172-205 (376)
269 cd01985 ETF The electron trans 26.9 43 0.0011 13.9 2.3 19 253-271 76-94 (181)
270 pfam03060 NPD 2-nitropropane d 26.8 43 0.0011 13.9 6.3 116 14-135 20-155 (330)
271 PRK13493 chemoreceptor glutami 26.6 44 0.0011 13.9 2.2 45 269-314 29-75 (214)
272 COG2861 Uncharacterized protei 26.6 44 0.0011 13.9 8.3 173 78-264 10-196 (250)
273 PRK06882 acetolactate synthase 26.6 44 0.0011 13.9 4.3 40 364-403 441-483 (574)
274 PRK13237 tyrosine phenol-lyase 26.6 44 0.0011 13.9 6.2 69 173-243 195-273 (459)
275 cd01568 QPRTase_NadC Quinolina 26.5 44 0.0011 13.8 9.5 13 234-246 138-150 (269)
276 PRK00748 1-(5-phosphoribosyl)- 26.5 44 0.0011 13.8 5.8 52 98-149 75-128 (241)
277 COG0352 ThiE Thiamine monophos 26.4 44 0.0011 13.8 2.5 18 231-248 125-142 (211)
278 TIGR01983 UbiG ubiquinone bios 26.3 15 0.00038 17.0 -0.5 34 168-203 225-262 (275)
279 PRK02261 methylaspartate mutas 26.2 44 0.0011 13.8 4.8 30 98-127 33-63 (137)
280 PRK13518 carboxylate-amine lig 26.2 44 0.0011 13.8 2.3 32 191-224 131-162 (357)
281 cd06568 GH20_SpHex_like A subg 26.0 45 0.0011 13.8 5.3 87 32-160 15-101 (329)
282 PRK01207 methionine synthase; 26.0 45 0.0011 13.8 3.1 15 73-87 46-61 (343)
283 pfam02913 FAD-oxidase_C FAD li 25.9 45 0.0011 13.8 2.3 100 172-277 133-246 (247)
284 PRK01033 imidazole glycerol ph 25.9 45 0.0011 13.8 5.3 50 99-148 77-129 (253)
285 pfam03849 Tfb2 Transcription f 25.8 19 0.00048 16.3 -0.0 109 98-206 38-150 (365)
286 cd01452 VWA_26S_proteasome_sub 25.8 45 0.0012 13.8 2.1 72 195-281 109-180 (187)
287 PRK12394 putative metallo-depe 25.6 45 0.0012 13.7 4.8 11 388-398 361-371 (387)
288 TIGR03264 met_CoM_red_C methyl 25.4 46 0.0012 13.7 2.3 66 106-181 31-99 (194)
289 PRK09800 putative selenate red 25.4 44 0.0011 13.8 1.8 15 229-243 406-420 (928)
290 PRK12839 hypothetical protein; 25.3 46 0.0012 13.7 4.3 13 400-412 425-437 (574)
291 TIGR03473 HpnK hopanoid biosyn 25.1 46 0.0012 13.7 4.8 21 215-235 108-128 (283)
292 TIGR01066 rplM_bact ribosomal 25.1 43 0.0011 13.9 1.7 60 358-425 47-107 (145)
293 PRK05904 coproporphyrinogen II 25.1 47 0.0012 13.7 9.3 56 216-279 140-200 (353)
294 pfam04244 DPRP Deoxyribodipyri 25.1 47 0.0012 13.7 3.7 21 215-235 49-69 (223)
295 pfam09871 DUF2098 Uncharacteri 24.8 47 0.0012 13.6 2.7 33 274-306 4-36 (91)
296 pfam07485 DUF1529 Domain of Un 24.7 47 0.0012 13.6 2.1 31 170-201 62-92 (123)
297 PRK09262 hypothetical protein; 24.7 36 0.00093 14.4 1.2 14 338-351 153-166 (227)
298 COG1139 Uncharacterized conser 24.7 47 0.0012 13.6 8.5 88 60-148 110-200 (459)
299 pfam03320 FBPase_glpX Bacteria 24.5 48 0.0012 13.6 6.7 35 182-220 141-175 (308)
300 COG0022 AcoB Pyruvate/2-oxoglu 24.4 48 0.0012 13.6 3.5 18 260-277 156-173 (324)
301 PRK06134 putative FAD-binding 23.9 49 0.0012 13.5 4.4 13 400-412 423-435 (579)
302 PRK06294 coproporphyrinogen II 23.8 49 0.0012 13.5 7.5 58 216-281 140-202 (374)
303 PRK08327 acetolactate synthase 23.8 49 0.0013 13.5 4.0 93 122-224 147-247 (568)
304 PRK13587 1-(5-phosphoribosyl)- 23.6 50 0.0013 13.5 4.4 51 98-148 78-130 (234)
305 COG0075 Serine-pyruvate aminot 23.6 50 0.0013 13.5 7.4 107 34-141 37-161 (383)
306 PRK12474 hypothetical protein; 23.5 50 0.0013 13.5 5.3 39 364-402 409-450 (518)
307 PRK13515 carboxylate-amine lig 23.5 50 0.0013 13.5 2.6 29 191-221 124-152 (381)
308 cd02005 TPP_PDC_IPDC Thiamine 23.5 50 0.0013 13.5 4.6 21 99-119 72-95 (183)
309 PRK13371 4-hydroxy-3-methylbut 23.4 50 0.0013 13.5 8.5 125 20-162 48-178 (392)
310 cd01204 IRS_PTB Insulin recept 23.4 50 0.0013 13.5 2.0 28 265-292 56-83 (104)
311 KOG1250 consensus 23.3 50 0.0013 13.5 8.3 77 56-135 93-178 (457)
312 pfam04309 G3P_antiterm Glycero 23.2 50 0.0013 13.4 6.5 42 104-145 4-47 (174)
313 TIGR03313 Se_sel_red_Mo probab 23.1 51 0.0013 13.4 1.9 15 229-243 430-444 (951)
314 CHL00197 carA carbamoyl-phosph 22.9 51 0.0013 13.4 6.4 17 206-222 247-263 (383)
315 PRK07586 hypothetical protein; 22.9 51 0.0013 13.4 5.1 66 123-188 128-197 (514)
316 PRK12415 fructose 1,6-bisphosp 22.9 51 0.0013 13.4 5.7 27 190-220 151-177 (323)
317 cd03130 GATase1_CobB Type 1 gl 22.6 19 0.00049 16.3 -0.5 16 229-244 39-54 (198)
318 pfam00224 PK Pyruvate kinase, 22.3 52 0.0013 13.3 2.1 12 337-348 276-287 (348)
319 cd00477 FTHFS Formyltetrahydro 22.3 52 0.0013 13.3 6.0 20 279-298 304-323 (524)
320 TIGR01743 purR_Bsub pur operon 22.3 52 0.0013 13.3 4.1 203 177-397 6-236 (269)
321 pfam01884 PcrB PcrB family. Th 22.3 52 0.0013 13.3 1.8 76 230-310 113-193 (231)
322 pfam02424 ApbE ApbE family. Th 22.2 44 0.0011 13.8 1.3 23 335-357 211-233 (254)
323 PRK05858 hypothetical protein; 22.2 53 0.0013 13.3 5.0 13 365-377 456-468 (543)
324 PRK05799 coproporphyrinogen II 22.2 53 0.0013 13.3 8.6 58 216-281 136-198 (374)
325 PRK13517 carboxylate-amine lig 22.2 53 0.0013 13.3 2.6 32 191-224 127-158 (371)
326 PRK04308 murD UDP-N-acetylmura 22.1 53 0.0013 13.3 7.4 99 6-108 3-123 (445)
327 pfam02310 B12-binding B12 bind 22.1 53 0.0013 13.3 2.2 50 180-241 42-91 (121)
328 pfam09370 TIM-br_sig_trns TIM- 22.0 32 0.00082 14.8 0.5 31 210-240 194-224 (268)
329 PRK09479 glpX fructose 1,6-bis 21.9 53 0.0014 13.3 6.5 28 189-220 150-177 (320)
330 PRK08979 acetolactate synthase 21.7 54 0.0014 13.2 4.0 37 364-403 441-483 (572)
331 cd02072 Glm_B12_BD B12 binding 21.6 54 0.0014 13.2 4.6 53 180-243 41-93 (128)
332 cd05795 Ribosomal_P0_L10e Ribo 21.3 55 0.0014 13.2 2.8 53 17-75 9-62 (175)
333 pfam04413 Glycos_transf_N 3-De 21.3 55 0.0014 13.2 5.6 61 76-136 24-93 (186)
334 TIGR00787 dctP TRAP transporte 21.3 55 0.0014 13.2 3.1 32 62-93 148-179 (267)
335 TIGR02708 L_lactate_ox L-lacta 21.2 55 0.0014 13.2 3.7 63 12-75 13-92 (368)
336 PRK10864 putative methyltransf 21.2 55 0.0014 13.2 5.9 12 189-200 109-120 (348)
337 pfam01973 MAF_flag10 Protein o 21.2 55 0.0014 13.2 4.3 19 27-45 25-44 (169)
338 PRK09372 ribonuclease activity 21.2 43 0.0011 13.9 1.0 16 337-352 130-145 (160)
339 PRK08392 hypothetical protein; 21.1 55 0.0014 13.2 4.2 15 186-201 84-98 (215)
340 COG0812 MurB UDP-N-acetylmuram 21.1 35 0.0009 14.5 0.6 21 62-82 91-112 (291)
341 COG0821 gcpE 1-hydroxy-2-methy 21.0 56 0.0014 13.1 6.5 187 33-266 34-228 (361)
342 COG4943 Predicted signal trans 21.0 56 0.0014 13.1 2.5 35 95-129 128-163 (524)
343 TIGR01430 aden_deam adenosine 20.8 56 0.0014 13.1 3.8 72 126-215 150-225 (346)
344 cd06530 S26_SPase_I The S26 Ty 20.7 56 0.0014 13.1 3.3 31 343-373 12-45 (85)
345 TIGR03457 sulphoacet_xsc sulfo 20.7 56 0.0014 13.1 5.1 13 365-377 451-463 (579)
346 PRK10558 alpha-dehydro-beta-de 20.7 56 0.0014 13.1 11.8 73 62-137 27-113 (256)
347 cd02013 TPP_Xsc_like Thiamine 20.7 56 0.0014 13.1 5.8 17 203-219 148-164 (196)
348 COG1948 MUS81 ERCC4-type nucle 20.5 56 0.0014 13.1 1.5 54 66-135 40-96 (254)
349 TIGR01678 FAD_lactone_ox sugar 20.3 57 0.0015 13.1 3.2 66 82-150 23-91 (505)
350 PRK07315 fructose-bisphosphate 20.3 58 0.0015 13.0 3.8 18 29-46 23-40 (293)
351 PRK01060 endonuclease IV; Prov 20.2 58 0.0015 13.0 5.2 24 164-187 147-170 (281)
352 PRK08999 hypothetical protein; 20.2 58 0.0015 13.0 5.5 32 230-261 246-277 (312)
353 PRK00141 murD UDP-N-acetylmura 20.1 58 0.0015 13.0 5.7 98 14-115 28-145 (476)
354 PRK09552 mtnX 2-hydroxy-3-keto 20.0 58 0.0015 13.0 3.4 12 17-28 18-29 (219)
No 1
>TIGR01048 lysA diaminopimelate decarboxylase; InterPro: IPR002986 Pyridoxal-dependent decarboxylases that act on ornithine-, lysine-, arginine- and related substrates can be classified into different families on the basis of sequence similarity , . One of these families includes ornithine decarboxylase (ODC), which catalyses the transformation of ornithine into putrescine; prokaryotic diaminopimelic acid decarboxylase (DAPDC), which catalyses the conversion of diaminopimelic acid into lysine, the final step of lysine biosynthesis; Pseudomonas syringae pv. tabaci protein, tabA, which is probably involved in tabtoxin biosynthesis and is similar to DAPDC; and bacterial and plant biosynthetic arginine decarboxylase (ADC), which catalyses the transformation of arginine into agmatine, the first step in putrescine synthesis from arginine. Although these proteins, which are known collectively as group IV decarboxylases , probably share a common evolutionary origin, their levels of sequence similarity are low, being confined to a few short conserved regions. These conserved motifs suggest a common structural arrangement for positioning of substrate and the cofactor pyridoxal 5'-phosphate among bacterial DAP decarboxylases, eukaryotic ornithine decarboxylases and arginine decarboxylases . The structure of bacterial diaminopimelate decarboxylase has been determined . ; GO: 0008836 diaminopimelate decarboxylase activity, 0009089 lysine biosynthetic process via diaminopimelate.
Probab=100.00 E-value=0 Score=948.44 Aligned_cols=410 Identities=45% Similarity=0.755 Sum_probs=396.8
Q ss_pred EEECCEEEECCCCHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCC--CC-CEEEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 6668858987842999999749978997799999999999986144--79-78999641079999999999739928986
Q gi|254780371|r 5 KYFEGSLHAENVSLEKLAHVVQTPFYCYSTTAIEKNYLTFSNAFDG--MD-TMVCYALKANSNQAVIKTLAHLGSGLDIV 81 (431)
Q Consensus 5 ~~~~~~l~i~~~~l~~La~~~gTP~yV~d~~~i~~n~~~l~~a~~~--~~-~~i~yAvKaN~~~~il~~l~~~G~g~dv~ 81 (431)
+.++|+|+|+++++.+|+++|||||||||.+.|++|++++++||.. .+ ++|+||+|||+|+.|+++++++|+||||+
T Consensus 3 ~~~~G~l~i~~~~~~~La~~fGTPLYVyd~~~l~~~~~~~~~AF~~~~~~~~~v~YA~KAn~Nl~~~~~la~~G~G~D~V 82 (431)
T TIGR01048 3 ENKDGELFIEGVDLKELAEEFGTPLYVYDEATLRERFEAYKEAFGAAERESALVCYAVKANSNLALLRLLAELGSGFDVV 82 (431)
T ss_pred EECCCEEEEECCCHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHCCHHHHHHHHHCCCCEEEE
T ss_conf 40254489844677999985189879816789999999999873015877531587431407688999999638846887
Q ss_pred CHHHHHHHHHCCCC----CCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCC
Q ss_conf 89998652212578----43124447754201244442068723333220246768774113344215899872377867
Q gi|254780371|r 82 SEGELRRALAAPVP----AERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINAN 157 (431)
Q Consensus 82 S~~El~~al~~G~~----~~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~ 157 (431)
|.|||++|+.||++ |++|+|||++||.+||+.|++.+|++|||||++||++|.++|++.|++++|+|||||+++++
T Consensus 83 S~GEL~~A~~AG~~~~~~~~~i~F~Gn~Ks~~El~~Al~~~i~~~nVdS~~El~~l~~~A~e~G~~~~i~~RvNP~Vdak 162 (431)
T TIGR01048 83 SGGELYRALAAGFPLQEIPEKIVFSGNGKSRAELERALELGIRCINVDSFSELELLNEIAPELGKKARISLRVNPDVDAK 162 (431)
T ss_pred EHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCC
T ss_conf 01699999980888556664368965877889999999637989997688999999973521385589999726887598
Q ss_pred CCCCCCCCCCCCCCCCCCC--CCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC-CCCCCEE
Q ss_conf 4433322334445688711--113457776415632200233556415644204899999999887653102-6665268
Q gi|254780371|r 158 THKKISTGKKEDKFGIPIH--QIHSLYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSN-GHNIQHI 234 (431)
Q Consensus 158 ~~~~~~tg~~~sKFGi~~~--~~~~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~l 234 (431)
||++|+||.+.||||++.+ ++.++.+.+.+.++|+++|||||+|||+.|.+.|..|.+++.++++.+++. |+.+++|
T Consensus 163 THpyI~TG~~~sKFG~~~~sG~a~~~~~~a~~~~~l~~vG~H~HIGSQi~d~~Pf~~A~~~v~~~~~~l~~~yG~~l~~l 242 (431)
T TIGR01048 163 THPYISTGLKDSKFGIDVESGEALEAYLYALQLENLEIVGIHCHIGSQILDLSPFVEAAEKVVKLVEELKAEYGIDLEFL 242 (431)
T ss_pred CCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf 78312210003654777457531789999983789938998643373010234079999999999998888716007999
Q ss_pred EECCCCCCCCCCCCCCCCHHHHHHHHHHHHCC-----C-CCEEEEEECCEECCCCCEEEEEEEEECCCCC-CCCEEECCC
Q ss_conf 80687300026654553114565556542102-----4-5303441011120366325888764034689-742200553
Q gi|254780371|r 235 DVGGGLGIAYHSDHRPPSSSDYASLIHQYFGN-----L-QCKIILEPGRFLVADVGILVTKVISIKKSAD-KTFVILDVA 307 (431)
Q Consensus 235 diGGGf~i~y~~~~~~~~~~~~~~~i~~~~~~-----~-~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~-~~~~~vD~g 307 (431)
|+||||||+|.+++.+|++++|++++.+.+++ . +++||+||||||||+||+|||+|..+|+... ++|++||||
T Consensus 243 d~GGGLGi~Y~~e~~~p~~~~yA~~~~~~l~~~~~~g~~~~~li~EPGRslVa~aG~Llt~V~~~K~~~~~r~Fv~VDaG 322 (431)
T TIGR01048 243 DLGGGLGIPYTPEEEPPDLSEYAQAILAALEGYARLGLPDPKLILEPGRSLVANAGVLLTRVGFVKEVGSVRNFVIVDAG 322 (431)
T ss_pred ECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEECCCCEEEEEEEEEEECCCEEEEEEEECC
T ss_conf 83872224006888866989999999999886775279963799922600020451789987668746857899998077
Q ss_pred CCCCCCCHHHCCCCCCCCCCCC--CCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHCCCCCC
Q ss_conf 0001100111024653222234--67776158999810005666656210056688888999967970233340277889
Q gi|254780371|r 308 MNDFMRPTLYDAYHEINYIVNP--AGDRLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQSGTYNSR 385 (431)
Q Consensus 308 ~~~~~~p~~~~~~~~i~~~~~~--~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~s~~s~fn~~ 385 (431)
||++|||+||++||+|.++ ++ ..+.++..++|+||+|+|||+|++++.||++++||+|++.+||||++|||||||+|
T Consensus 323 MNDliRPalY~AyH~i~~~-~~Dr~~~~~~~~~~vvGp~CESGD~l~~Dr~Lp~~e~GD~lav~~aGAYG~SMSSnYN~r 401 (431)
T TIGR01048 323 MNDLIRPALYGAYHHIIVA-NRDRTNEEPTEVADVVGPICESGDVLAKDRELPEVEPGDLLAVFSAGAYGFSMSSNYNSR 401 (431)
T ss_pred CCCCHHHHHHCCCEEEEEC-CCCCCCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCCHHHHCCCCC
T ss_conf 5500125643363257752-666756677216897178344544001412454447885799724787431442301666
Q ss_pred CCCEEEEEECCEEEEEEECCCHHHHHHCCC
Q ss_conf 866599998896899982489889973088
Q gi|254780371|r 386 LLIPEIMVNGSQFHIIRPRMTFQELIELDS 415 (431)
Q Consensus 386 p~p~~v~v~~g~~~~ir~ret~ed~~~~~~ 415 (431)
||||||||++|+++|||||||++|+++.|.
T Consensus 402 pR~AEVLv~~g~~~LIR~RET~~Dl~~~e~ 431 (431)
T TIGR01048 402 PRPAEVLVEGGQARLIRRRETYEDLLALEL 431 (431)
T ss_pred CCCEEEEEECCEEEEEEEECCHHHHHHHCC
T ss_conf 762356786782899996168799985329
No 2
>PRK11165 diaminopimelate decarboxylase; Provisional
Probab=100.00 E-value=0 Score=754.68 Aligned_cols=389 Identities=32% Similarity=0.541 Sum_probs=347.3
Q ss_pred ECCCCHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHC
Q ss_conf 87842999999749978997799999999999986144797899964107999999999973992898689998652212
Q gi|254780371|r 13 AENVSLEKLAHVVQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEGELRRALAA 92 (431)
Q Consensus 13 i~~~~l~~La~~~gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~S~~El~~al~~ 92 (431)
+.+-+|.+||++|||||||||++.|++|+++|++ |+ .++||+||||++.|++++++.|+|+||+|.+|+++|+++
T Consensus 4 ~~~~~l~~la~~yGTP~yVyd~~~i~~~~~~l~~-~~----~i~YAvKAN~~~~il~~l~~~G~g~DvaS~gEl~~al~a 78 (412)
T PRK11165 4 LTAENLLRLPAEFGTPVWVYDADIIRRQIAQLKQ-FD----VIRFAQKACSNIHILRLMREQGVKVDAVSLGEIERALAA 78 (412)
T ss_pred CCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHC-CC----CEEEEHHHCCCHHHHHHHHHCCCCEEEECHHHHHHHHHC
T ss_conf 8889999999986998799869999999998626-68----248862648889999999984996688799999999975
Q ss_pred CCCC----CCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 5784----312444775420124444206872333322024676877411334421589987237786744333223344
Q gi|254780371|r 93 PVPA----ERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKE 168 (431)
Q Consensus 93 G~~~----~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~ 168 (431)
||+| ++|+|+||+|+.++|+.|++.|+. +|+||++||++|.+.+ +..+|+|||||+++.++|..++||+.+
T Consensus 79 G~~~~~~~~~Iif~g~~k~~~~l~~a~~~gv~-in~ds~~eL~~i~~~~----~~~~V~lRiNP~~~~~~~~~~~tg~~~ 153 (412)
T PRK11165 79 GYSPGTEPDDIVFTADLIDRATLARVSELKIP-VNAGSIDMLDQLGQVS----PGHRVWLRINPGFGHGHSQKTNTGGEN 153 (412)
T ss_pred CCCCCCCCCCEEECCCCCCHHHHHHHHHCCCE-EECCCHHHHHHHHHHC----CCCCEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 99989985523877865799999999984997-8228789999998646----688469995688687766433468875
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf 45688711113457776415632200233556415644204899999999887653102666526880687300026654
Q gi|254780371|r 169 DKFGIPIHQIHSLYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDH 248 (431)
Q Consensus 169 sKFGi~~~~~~~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~ 248 (431)
||||++.+++.++++.+++. ++++.|||||+|||+ +.+.+.+.++.+.+ ..++.|+++++||+|||||+||..++
T Consensus 154 sKFGi~~~~~~~~~~~~~~~-~l~~~GlH~HiGS~i-~~~~~~~~~~~~~~---~~~~~g~~~~~idiGGGfgv~Y~~~~ 228 (412)
T PRK11165 154 SKHGIWHEDLPAALAVIQRY-GLKLVGIHMHIGSGV-DYGHLEQVCGAMVR---QVIELGQDIEAISAGGGLSIPYRSGE 228 (412)
T ss_pred CCCCCCHHHHHHHHHHHHHC-CCCEEEEEEECCCCC-CHHHHHHHHHHHHH---HHHHHCCCCCEEEECCCCCCCCCCCC
T ss_conf 55678999999999999867-997898889538887-76999999999999---99980887315761586664788898
Q ss_pred CCCCHHHHHHHHHHH---HCC---CCCEEEEEECCEECCCCCEEEEEEEEECCCCCCCCEEECCCCCCCCCCHHHCCCCC
Q ss_conf 553114565556542---102---45303441011120366325888764034689742200553000110011102465
Q gi|254780371|r 249 RPPSSSDYASLIHQY---FGN---LQCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMNDFMRPTLYDAYHE 322 (431)
Q Consensus 249 ~~~~~~~~~~~i~~~---~~~---~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~vD~g~~~~~~p~~~~~~~~ 322 (431)
.++++++|+..+... +.. .+++|++||||||||+||++||+|.++|++++++|+++|+|||+++||++|+++|+
T Consensus 229 ~~~d~~~~~~~~~~~~~~i~~~~~~~~~l~iEPGR~lva~aG~llt~V~~~K~~~~~~~~~vD~Gmn~l~rpalyga~h~ 308 (412)
T PRK11165 229 EPVDTEHYFGLWNAARKQIARHLGHPVKLEIEPGRFLVAESGVLVTQVRAVKQMGSRHFVLVDAGFNDLMRPAMYGSYHH 308 (412)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEECCCCEEEEEEEEEEECCCCCEEEECCCHHCCCCCHHCCCCCE
T ss_conf 89899999999999999999852998469982572673155289999999997287658997254201543022134542
Q ss_pred CCCCCCC---CCCCCEEEEEEEEEECCCCCEEEEE-------EECCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEE
Q ss_conf 3222234---6777615899981000566665621-------00566888889999679702333402778898665999
Q gi|254780371|r 323 INYIVNP---AGDRLHIHADIVGPICETGDFIALN-------RKIALPRPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIM 392 (431)
Q Consensus 323 i~~~~~~---~~~~~~~~~~i~G~~C~~~D~l~~~-------~~lp~l~~GD~l~i~~~GAY~~s~~s~fn~~p~p~~v~ 392 (431)
+..+... ....+...++|+||+|+|+|+|+++ +.||.+++||+|+|.+||||++|||||||+||+||||+
T Consensus 309 i~~~~~~~~~~~~~~~~~~~v~Gp~Ces~D~l~~~~~~~i~~~~LP~l~~GD~l~i~~~GAY~~smss~yN~rp~paeVl 388 (412)
T PRK11165 309 ISVLAADGRSLEHAPLVETVVAGPLCESGDVFTQQEGGVVETRALPQVKVGDYLVLHDTGAYGASMSSNYNSRPLLPEVL 388 (412)
T ss_pred EEEECCCCCCCCCCCCCEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHCCCCCCCCCCEEE
T ss_conf 68825667776568755689886798862433436665314444888999899999168816176602125999880899
Q ss_pred EECCEEEEEEECCCHHHHHHCCCC
Q ss_conf 988968999824898899730888
Q gi|254780371|r 393 VNGSQFHIIRPRMTFQELIELDSI 416 (431)
Q Consensus 393 v~~g~~~~ir~ret~ed~~~~~~~ 416 (431)
|++|++++||||||+||++++|+|
T Consensus 389 v~~g~~~lir~ret~edl~~~e~~ 412 (412)
T PRK11165 389 FDNGQARLIRRRQTIEELLALELL 412 (412)
T ss_pred EECCEEEEEEECCCHHHHHHHCCC
T ss_conf 999999999808999999740319
No 3
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated. The sequences in this family contain the pyridoxal binding domain (pfam02784) and C-terminal sheet domain (pfam00278) of a family of Pyridoxal-dependent decarboxylases. Characterized enzymes in this family decarboxylate substrates such as ornithine, diaminopimelate and arginine. The genes of the family modeled here, with the exception of those observed in certain Burkholderia species, are all found in the context of exopolysaccharide biosynthesis loci containing the exosortase/PEP-CTERM protein sorting system. More specifically, these are characteristic of the type 1 exosortase system represented by the Genome Property GenProp0652. The substrate of these enzymes may be a precursor of the carrier or linker which is hypothesized to release the PEP-CTERM protein from the exosortase enzyme. These enzymes are apparently most closely related to the diaminopimelate decarboxylase modeled by TIGR01048
Probab=100.00 E-value=0 Score=738.69 Aligned_cols=385 Identities=31% Similarity=0.479 Sum_probs=357.1
Q ss_pred CEEECCEEEECCCCHHHHHHHCC-CCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 16668858987842999999749-97899779999999999998614479789996410799999999997399289868
Q gi|254780371|r 4 FKYFEGSLHAENVSLEKLAHVVQ-TPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIVS 82 (431)
Q Consensus 4 ~~~~~~~l~i~~~~l~~La~~~g-TP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~S 82 (431)
|+|+||+|+|+|+++.+||++|| |||||||++.|++|+++|+++|+. +++++||+|||+++.|+++|++.|+|+||+|
T Consensus 1 ~~~~~g~l~i~g~~~~~la~~~g~TPlyVyd~~~l~~~~~~l~~a~p~-~~~i~YAvKaN~~~~il~~l~~~G~g~DvaS 79 (398)
T TIGR03099 1 FTIKNGCLCVGGIPLTELAARAGGTPFYAYDRGLVSERVAALRKALPE-ELAIHYAVKANPMPALLAHMAPLVDGFDVAS 79 (398)
T ss_pred CEEECCEEEECCEEHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCC-CCEEEEEEECCCCHHHHHHHHHCCCCEEEEC
T ss_conf 917999999999669999998789998996699999999999985799-9849999602899999999998199299969
Q ss_pred HHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCC
Q ss_conf 99986522125784312444775420124444206872333322024676877411334421589987237786744333
Q gi|254780371|r 83 EGELRRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKI 162 (431)
Q Consensus 83 ~~El~~al~~G~~~~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~ 162 (431)
.+|+++|+++|++|++|+|+||+|++++|+.|++.|+ .||+||++||++|.+++++.+++++|+||+||+++..++. +
T Consensus 80 ~gEl~~al~~G~~~~~Ii~~gp~K~~~~l~~A~~~gv-~i~vDS~~El~~i~~~a~~~~~~~~i~lRinp~~~~~~~~-~ 157 (398)
T TIGR03099 80 AGELAVALDTGYDPGCISFAGPGKTDAELRRALAAGV-LINVESLRELNRLAALSEALGLRARVAVRVNPDFELKGSG-M 157 (398)
T ss_pred HHHHHHHHHCCCCCHHEEECCCCCCHHHHHHHHHCEE-EEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC-E
T ss_conf 9999999984999100177899879799998875605-9964446889999998876599606998616887668786-0
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-HCCCCCCCEEEECCCCC
Q ss_conf 22334445688711113457776415632200233556415644204899999999887653-10266652688068730
Q gi|254780371|r 163 STGKKEDKFGIPIHQIHSLYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQL-RSNGHNIQHIDVGGGLG 241 (431)
Q Consensus 163 ~tg~~~sKFGi~~~~~~~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l-~~~g~~~~~ldiGGGf~ 241 (431)
.+|+.+||||++.+++.++++.+++. ++++.|||||+|||+.+++.|.++++.+.+++.++ ++.|+++++||+|||||
T Consensus 158 ~~~~~~sKFGi~~~~~~~~l~~~~~~-~l~~~Glh~HiGS~~~~~~~~~~a~~~~~~~~~~l~~~~g~~l~~idiGGGf~ 236 (398)
T TIGR03099 158 KMGGGAKQFGIDAEQVPAALAFIKAA-DLDFQGFHIFAGSQNLNAEAIIEAQAKTLALALRLAESAPAPVRVINIGGGFG 236 (398)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 12888554678999999999999866-99299989926989889699999999999999999997599752776257657
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCC-----CCEEEEEECCEECCCCCEEEEEEEEECCCCCCCCEEECCCCCCCCCCH-
Q ss_conf 00266545531145655565421024-----530344101112036632588876403468974220055300011001-
Q gi|254780371|r 242 IAYHSDHRPPSSSDYASLIHQYFGNL-----QCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMNDFMRPT- 315 (431)
Q Consensus 242 i~y~~~~~~~~~~~~~~~i~~~~~~~-----~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~vD~g~~~~~~p~- 315 (431)
++|.+++.+++++.+++.+++.+++. +++|++|||||||++||+++++|+++|+..+++|+++|+|||++++|+
T Consensus 237 v~y~~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~l~~EPGR~lva~ag~llt~V~~~K~~~~~~~~~~D~G~~~~l~~~~ 316 (398)
T TIGR03099 237 IPYFPGNPPLDLAPVGAALAALFARLRDALPEVEILLELGRYLVGEAGIYVCRVIDRKISRGETFLVTDGGLHHHLSASG 316 (398)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEECCCCEEEEEEEEEEEECCCCEEEEECCCCCCCCCCCC
T ss_conf 67789998869999999999999987612798779990670320067189999999984398179994784302533343
Q ss_pred ----HHCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHH-CCCCCCCCCEE
Q ss_conf ----1102465322223467776158999810005666656210056688888999967970233340-27788986659
Q gi|254780371|r 316 ----LYDAYHEINYIVNPAGDRLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQS-GTYNSRLLIPE 390 (431)
Q Consensus 316 ----~~~~~~~i~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~s~~-s~fn~~p~p~~ 390 (431)
++.+.||+.... .........++|+||+|+++|+|++++.||++++||+|+|.+||||++||| +|||+||+|+|
T Consensus 317 ~~~~~~~~~~p~~~~~-~~~~~~~~~~~v~Gp~C~s~D~l~~~~~LP~l~~GD~L~i~~~GAY~~s~s~~~fn~~p~paE 395 (398)
T TIGR03099 317 NFGQVIRRNYPVVIGN-RIGGAVREIASIVGPLCTPLDLLAEKGTLPVAEPGDLVVIFQSGAYGASASPLAFLGHPEAVE 395 (398)
T ss_pred CHHHHHCCCCEEEECC-CCCCCCEEEEEEEECCCCCCCEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCE
T ss_conf 1034310255056146-788987558999912888446888377168899999999948454068762404039999868
Q ss_pred EEE
Q ss_conf 999
Q gi|254780371|r 391 IMV 393 (431)
Q Consensus 391 v~v 393 (431)
|||
T Consensus 396 vlv 398 (398)
T TIGR03099 396 LLV 398 (398)
T ss_pred EEC
T ss_conf 869
No 4
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=100.00 E-value=0 Score=721.85 Aligned_cols=368 Identities=48% Similarity=0.780 Sum_probs=351.7
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCEEECCC
Q ss_conf 49978997799999999999986144797899964107999999999973992898689998652212578431244477
Q gi|254780371|r 25 VQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGV 104 (431)
Q Consensus 25 ~gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~S~~El~~al~~G~~~~~Ii~~g~ 104 (431)
|||||||||++.|++|+++|+++|++.+++++||+|||+++.|++++++.|+|+||+|.+|+++|+++|+++++|+|+||
T Consensus 1 yGTP~yv~d~~~l~~~~~~l~~~~~~~~~~i~yAvKaN~~~~il~~l~~~g~g~dvaS~~El~~al~~G~~~~~Ii~~gp 80 (373)
T cd06828 1 YGTPLYVYDEATIRENYRRLKEAFSGPGFKICYAVKANSNLAILKLLAEEGLGADVVSGGELYRALKAGFPPERIVFTGN 80 (373)
T ss_pred CCCCEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCEEEEECHHHHHHHHHCCCCHHHEEECCC
T ss_conf 99988998899999999999986045897899986227999999999985991899799999999984999545998176
Q ss_pred CCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 54201244442068723333220246768774113344215899872377867443332233444568871111345777
Q gi|254780371|r 105 GKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAY 184 (431)
Q Consensus 105 ~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~ 184 (431)
+|+.++|+.|+++|+.+|++||++||++|.+++++.+++++|+|||||+++.+++..++||+.+||||++.+++.++++.
T Consensus 81 ~K~~~~i~~A~~~gv~~i~~Ds~~El~~i~~~~~~~~~~~~v~lRinp~~~~~~~~~~~~~~~~sKFG~~~~~~~~~~~~ 160 (373)
T cd06828 81 GKSDEELELALELGILRINVDSLSELERLGEIAPELGKGAPVALRVNPGVDAGTHPYISTGGKDSKFGIPLEQALEAYRR 160 (373)
T ss_pred CCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHH
T ss_conf 41137899999739856762999999999986276199854999988898877776231377532138999999999999
Q ss_pred HHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 64156322002335564156442048999999998876531026665268806873000266545531145655565421
Q gi|254780371|r 185 ASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQYF 264 (431)
Q Consensus 185 ~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~~~ 264 (431)
+++++++++.|||||+|||+.+++.|.++++.+.++++++++.|+++++||||||||++|..++.++++++|++.|++.+
T Consensus 161 ~~~~~~l~~~GlhfHvGS~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ldiGGGf~v~y~~~~~~~~~~~~~~~i~~~l 240 (373)
T cd06828 161 AKELPGLKLVGLHCHIGSQILDLEPFVEAAEKLLDLAAELRELGIDLEFLDLGGGLGIPYRDEDEPLDIEEYAEAIAEAL 240 (373)
T ss_pred HHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 98579984688788647666887999999999999999999749986577436874645788889989999999999999
Q ss_pred CCC-----CCEEEEEECCEECCCCCEEEEEEEEECCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 024-----530344101112036632588876403468974220055300011001110246532222346777615899
Q gi|254780371|r 265 GNL-----QCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMNDFMRPTLYDAYHEINYIVNPAGDRLHIHAD 339 (431)
Q Consensus 265 ~~~-----~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~vD~g~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~ 339 (431)
+++ +++|++|||||||++||+++|+|+++|++.+++|+++|+|||+++||++|+++|++.++... ......+++
T Consensus 241 ~~~~~~~~~~~li~EPGR~lva~ag~lvt~V~~~k~~~~~~~~~~D~g~~~~~rP~ly~~~~~i~~~~~~-~~~~~~~~~ 319 (373)
T cd06828 241 KELCEGGPDLKLIIEPGRYIVANAGVLLTRVGYVKETGGKTFVGVDAGMNDLIRPALYGAYHEIVPVNKP-GEGETEKVD 319 (373)
T ss_pred HHHHCCCCCCEEEEECCHHHHCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCCHHHCCCCCCEEECCCC-CCCCCEEEE
T ss_conf 9974248986799904268650675699999999964980899977863445565651775611764888-889824899
Q ss_pred EEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEE
Q ss_conf 981000566665621005668888899996797023334027788986659999
Q gi|254780371|r 340 IVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMV 393 (431)
Q Consensus 340 i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~s~~s~fn~~p~p~~v~v 393 (431)
|+||||+++|+|+++..+|++++||+|+|.|||||+++|+|+||++|+|++|+|
T Consensus 320 v~Gp~C~s~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~ss~FNg~p~p~~V~v 373 (373)
T cd06828 320 VVGPICESGDVFAKDRELPEVEEGDLLAIHDAGAYGYSMSSNYNSRPRPAEVLV 373 (373)
T ss_pred EECCCCCCCCEECCCCCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCCCCEEEC
T ss_conf 983698988788846427899999999992986223755487779999978979
No 5
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=100.00 E-value=0 Score=715.18 Aligned_cols=389 Identities=42% Similarity=0.702 Sum_probs=366.7
Q ss_pred CCCEEECCEEEECCCCHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 87166688589878429999997499789977999999999999861447978999641079999999999739928986
Q gi|254780371|r 2 SAFKYFEGSLHAENVSLEKLAHVVQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIV 81 (431)
Q Consensus 2 ~~~~~~~~~l~i~~~~l~~La~~~gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~ 81 (431)
..+..++++|+++++++.+|++++||||||||++.|++|+++++++|++.+++++||+|||+++.|+++|.++|+|+||+
T Consensus 2 ~~~~~~~~~l~~~~~~~~~l~~~~gTP~yvyd~~~l~~~~~~~~~a~~~~~~~i~yAvKAn~~~~il~~l~~~g~g~Dv~ 81 (394)
T COG0019 2 TFFRNKDGELTIEGVDLPALAEEFGTPVYVYDEATLRRNARELKSAFPGSGAKVFYAVKANSNPAILRLLAEEGSGFDVA 81 (394)
T ss_pred CCCCCCCCCEEECCCCHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEC
T ss_conf 50001455302346457878503699889984799999999999861567815999974689879999999738886534
Q ss_pred CHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCC
Q ss_conf 89998652212578431244477542012444420687233332202467687741133442158998723778674433
Q gi|254780371|r 82 SEGELRRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKK 161 (431)
Q Consensus 82 S~~El~~al~~G~~~~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~ 161 (431)
|.+|+++|+++|++|++|+|+||+|+.+||+.|++.|+..|++||++||++|.+++.+. +++|+|||||+++.++|+.
T Consensus 82 S~gEl~~al~aG~~~~~I~f~g~~ks~~ei~~a~e~gi~~i~vdS~~El~~l~~~a~~~--~~~v~lRInP~~~~~th~~ 159 (394)
T COG0019 82 SLGELELALAAGFPPERIVFSGPAKSEEEIAFALELGIKLINVDSEEELERLSAIAPGL--VARVSLRINPGVSAGTHEY 159 (394)
T ss_pred CHHHHHHHHHCCCCHHEEEECCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCC
T ss_conf 89999999983999220999189999999999998699389979999999999864566--7449999889987775866
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH-CCCCCCCEEEECCCC
Q ss_conf 3223344456887111134577764156322002335564156442048999999998876531-026665268806873
Q gi|254780371|r 162 ISTGKKEDKFGIPIHQIHSLYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLR-SNGHNIQHIDVGGGL 240 (431)
Q Consensus 162 ~~tg~~~sKFGi~~~~~~~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~~~ldiGGGf 240 (431)
++||.+.||||++.+++.++++.+++.+++++.|||||+|||+.|.+.|.++++.+.+++.++. +.|+++++||+||||
T Consensus 160 ~~tg~~~sKFG~~~~~a~~~~~~~~~~~~l~~~Glh~HiGSq~~d~~~~~~a~~~~~~~~~~~~~~~g~~l~~inlGGG~ 239 (394)
T COG0019 160 IATGGKSSKFGISPEEALDVLERAAKLLGLELVGLHFHIGSQITDLDPFEEALAKVEELFGRLAEELGIQLEWLNLGGGL 239 (394)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 67786302369898898999999864678824899985178788808999999999999999887508874089966985
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCC--CCCEEEEEECCEECCCCCEEEEEEEEECCCCCCCCEEECCCCCCCCCCHHHC
Q ss_conf 00026654553114565556542102--4530344101112036632588876403468974220055300011001110
Q gi|254780371|r 241 GIAYHSDHRPPSSSDYASLIHQYFGN--LQCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMNDFMRPTLYD 318 (431)
Q Consensus 241 ~i~y~~~~~~~~~~~~~~~i~~~~~~--~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~vD~g~~~~~~p~~~~ 318 (431)
|++|.+++.++++++|++.+.+.+++ .+++|++||||+||++||+|+|+|.++|++.+++|+++|+|||+++||++|+
T Consensus 240 gi~Y~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~EPGR~iv~~aG~Lvt~V~~~k~~~~~~~v~vD~gm~~~~rpaly~ 319 (394)
T COG0019 240 GITYEDEYDPPDLAAYAKALKEAFGEYAEDVELILEPGRAIVANAGVLVTEVLDVKENGERNFVIVDGGMNDLMRPALYG 319 (394)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHCCEEEEEEEEEEEEECCCEEEEECCHHHCCCCHHHCC
T ss_conf 76878878840199999999999851567865998377577515436999999999707726999803442386777758
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCC-CCCEEEEECCCCHHHHHHCCCCCCCCCEEEEE
Q ss_conf 2465322223467776158999810005666656210056688-88899996797023334027788986659999
Q gi|254780371|r 319 AYHEINYIVNPAGDRLHIHADIVGPICETGDFIALNRKIALPR-PGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMV 393 (431)
Q Consensus 319 ~~~~i~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~-~GD~l~i~~~GAY~~s~~s~fn~~p~p~~v~v 393 (431)
++|++.+ ...........++|+||+|+++|+|++++.+|.+. +||+|+|.++|||++||+||||++|+|++|++
T Consensus 320 a~~~~~~-~~~~~~~~~~~~~v~G~~CesgD~~~~d~~lp~~~~~GD~l~i~~aGAY~~sm~s~yN~~~~~~ev~v 394 (394)
T COG0019 320 AYHHIRL-NRTDEDAEREEYDVVGPTCESGDVLARDRALPEPLKVGDLLVILDAGAYGASMSSNYNGRPRPAEVLV 394 (394)
T ss_pred CCCCCCC-CCCCCCCCEEEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCCEEEC
T ss_conf 7443312-45667887379999878768887771212378768989999990463267766043569899853559
No 6
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase. This subfamily is composed of Bacillus circulans BtrK decarboxylase and similar proteins. These proteins are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases, eukaryotic ornithine decarboxylases and diaminopimelate decarboxylases. BtrK is presumed to function as a PLP-dependent decarboxylase involved in the biosynthesis of the aminoglycoside antibiotic butirosin. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity.
Probab=100.00 E-value=0 Score=697.28 Aligned_cols=370 Identities=31% Similarity=0.535 Sum_probs=339.5
Q ss_pred HHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCEE
Q ss_conf 99974997899779999999999998614479789996410799999999997399289868999865221257843124
Q gi|254780371|r 21 LAHVVQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEGELRRALAAPVPAERIV 100 (431)
Q Consensus 21 La~~~gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~S~~El~~al~~G~~~~~Ii 100 (431)
||++|||||||||++.|++|+++|+++|+. .++++||+|||+++.|++++++.|+|+||+|++|+++|+++|+++++|+
T Consensus 1 La~~~GTP~yv~d~~~i~~~~~~l~~alp~-~~~i~YAvKaN~~~~vl~~l~~~G~g~DvaS~~El~~al~~G~~~~~Ii 79 (382)
T cd06839 1 LADAYGTPFYVYDRDRVRERYAALRAALPP-AIEIYYSLKANPNPALVAHLRQLGDGAEVASAGELALALEAGVPPEKIL 79 (382)
T ss_pred CCHHHCCCEEEEEHHHHHHHHHHHHHHCCC-CCEEEEEECCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCEE
T ss_conf 932009988998799999999999985899-9759999704899999999997499099989999999998599953107
Q ss_pred ECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 44775420124444206872333322024676877411334421589987237786744333223344456887111134
Q gi|254780371|r 101 FSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHS 180 (431)
Q Consensus 101 ~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~ 180 (431)
|+||+|+.++|+.|+++|+.+|++||++||+++.+++++.++.++|+|||||+++.+++ .+.+++.+||||++.+++.+
T Consensus 80 ~~gp~K~~~~l~~a~~~gv~~i~~Ds~~El~~i~~~a~~~~~~~~v~lRinp~~~~~~~-~~~~~g~~skFGi~~~~~~~ 158 (382)
T cd06839 80 FAGPGKSDAELRRAIEAGIGTINVESLEELERIDALAEEHGVVARVALRINPDFELKGS-GMKMGGGPSQFGIDVEELPA 158 (382)
T ss_pred EECCCCCHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCC-CCCCCCCCCCCCCCHHHHHH
T ss_conf 61687888999999983995764386799999999998639974699998158877877-61447885445899999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH-CCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 577764156322002335564156442048999999998876531-0266652688068730002665455311456555
Q gi|254780371|r 181 LYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLR-SNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASL 259 (431)
Q Consensus 181 ~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~ 259 (431)
+++.+++.+++++.|||||+|||+.+++.|.++++.+.+++.++. +.|.++++||||||||++|..++.+++++.|++.
T Consensus 159 ~~~~~~~~~~l~~~Glh~H~GS~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~idiGGGf~v~y~~~~~~~d~~~~~~~ 238 (382)
T cd06839 159 VLARIAALPNLRFVGLHIYPGTQILDADALIEAFRQTLALALRLAEELGLPLEFLDLGGGFGIPYFPGETPLDLEALGAA 238 (382)
T ss_pred HHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 99999846898378889835777789799999999999999998986598851775058737678898999899999999
Q ss_pred HHHHHCCC-----CCEEEEEECCEECCCCCEEEEEEEEECCCCCCCCEEECCCCCCCCCCHHHCCC-----CCCCCCCCC
Q ss_conf 65421024-----53034410111203663258887640346897422005530001100111024-----653222234
Q gi|254780371|r 260 IHQYFGNL-----QCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMNDFMRPTLYDAY-----HEINYIVNP 329 (431)
Q Consensus 260 i~~~~~~~-----~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~vD~g~~~~~~p~~~~~~-----~~i~~~~~~ 329 (431)
|++.++++ +++|++|||||+|++||+|+|+|+++|++.+++|+++|+|+|++++++.+... +|.... ..
T Consensus 239 i~~~~~~~~~~~~~~~l~~EPGR~lva~ag~lv~~V~~~K~~~~~~~~~~D~g~~~~~~~~~~~~~~~~~~~p~~~~-~~ 317 (382)
T cd06839 239 LAALLAELGDRLPGTRVVLELGRYLVGEAGVYVTRVLDRKVSRGETFLVTDGGMHHHLAASGNFGQVLRRNYPLAIL-NR 317 (382)
T ss_pred HHHHHHHHHHCCCCCEEEEECCCEEECCCEEEEEEEEEEEECCCCEEEEEECCCCCCCHHHCCHHHHHCCCCCEEEC-CC
T ss_conf 99999986420589689991350032157179999999983599579999075334412322325653147607824-78
Q ss_pred CCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHH-CCCCCCCCCEEEEE
Q ss_conf 67776158999810005666656210056688888999967970233340-27788986659999
Q gi|254780371|r 330 AGDRLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQS-GTYNSRLLIPEIMV 393 (431)
Q Consensus 330 ~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~s~~-s~fn~~p~p~~v~v 393 (431)
......++++|+||||+++|+|++++.+|++++||+|+|.++|||++||+ +|||++|+|+||||
T Consensus 318 ~~~~~~~~~~v~Gp~C~s~D~l~~~~~lp~l~~GD~L~i~~~GAY~~s~s~~~fn~~p~PaeVlV 382 (382)
T cd06839 318 MGGEERETVTVVGPLCTPLDLLGRNVELPPLEPGDLVAVLQSGAYGLSASPLAFLSHPAPAEVLV 382 (382)
T ss_pred CCCCCEEEEEEECCCCCCCCEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCEEEC
T ss_conf 88898169999898888877987054678899999999959866177750301369999888879
No 7
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=100.00 E-value=0 Score=696.74 Aligned_cols=364 Identities=30% Similarity=0.551 Sum_probs=334.5
Q ss_pred CHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHC--CC
Q ss_conf 2999999749978997799999999999986144797899964107999999999973992898689998652212--57
Q gi|254780371|r 17 SLEKLAHVVQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEGELRRALAA--PV 94 (431)
Q Consensus 17 ~l~~La~~~gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~S~~El~~al~~--G~ 94 (431)
.|.++++. ++|+||||.+.++.+.+.+++ +..++ ++||||||||+|.||++|++.|+||||+|.+|+++++++ |+
T Consensus 497 ~l~~~~~~-~~~~yvy~~~~~~~~~~~~~~-~~~~d-~~fYAVKaN~~P~IL~~La~lG~GFDcaS~gEl~~vL~~~~Gv 573 (865)
T PRK08961 497 RLLTLSDA-GTPRYVYHLPTVRARARALAA-LAAID-QRYYAIKANPHPAILRTLEEEGFGLECVSIGELRRVFKALPEL 573 (865)
T ss_pred HHHHHCCC-CCCEEEECHHHHHHHHHHHHC-CCCHH-HEEEEEECCCCHHHHHHHHHHCCCCEECCHHHHHHHHHHCCCC
T ss_conf 99863425-797389666999999999863-25311-3589985089989999999838983666999999999602795
Q ss_pred CCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 84312444775420124444206872333322024676877411334421589987237786744333223344456887
Q gi|254780371|r 95 PAERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIP 174 (431)
Q Consensus 95 ~~~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~ 174 (431)
+|+||+|+||+|+.+++++|++.|+. +++||++||+++.+.+++ .+|.|||||+++.++|++++||++++|||++
T Consensus 574 ~p~rIifa~~~K~~~ei~~A~~~gV~-~t~Ds~~EL~ki~~~~~~----a~v~LRInP~~~~g~h~~istGg~~sKFGi~ 648 (865)
T PRK08961 574 SPRRVLFTPSFAPRAEYEAAFALGVT-VTVDNVEALRNWPEVFRG----REVWLRIDLGHGDGHHEKVRTGGKESKFGLS 648 (865)
T ss_pred CCCCEEECCCCCCHHHHHHHHHCCCE-EEECCHHHHHHHHHHCCC----CEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 93318979999999999999977998-998389999999987789----8599997589998877751379998888988
Q ss_pred CCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHH
Q ss_conf 11113457776415632200233556415644204899999999887653102666526880687300026654553114
Q gi|254780371|r 175 IHQIHSLYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSS 254 (431)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~ 254 (431)
.+++.++++.++++ +|+++|+|||+|||+.+++.|.++++.+.++++++. ++++||+|||||+||.+++.+++++
T Consensus 649 ~~~~~~ll~~Ak~~-gL~vvGihfHVGSg~~d~~~~~~a~~~~~~la~~~~----~l~~LDiGGGfgv~y~~~~~~~d~~ 723 (865)
T PRK08961 649 STRIDEFVDLAKTL-GITVTGLHAHLGSGVETGDHWRRMYDELAGFARRIG----TVETIDIGGGLPIPYSPGDEPFDLD 723 (865)
T ss_pred HHHHHHHHHHHHHC-CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCC----CCEEEEECCCCCCCCCCCCCCCCHH
T ss_conf 99999999999876-996799997427788998999999999999998529----9709985899888889998886999
Q ss_pred HHHHHHHHHHCC-CCCEEEEEECCEECCCCCEEEEEEEEECCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCC
Q ss_conf 565556542102-4530344101112036632588876403468974220055300011001110246532222346777
Q gi|254780371|r 255 DYASLIHQYFGN-LQCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMNDFMRPTLYDAYHEINYIVNPAGDR 333 (431)
Q Consensus 255 ~~~~~i~~~~~~-~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~vD~g~~~~~~p~~~~~~~~i~~~~~~~~~~ 333 (431)
.+.+.+.+.+.. .+.+||+|||||+|++||+|+|+|+++|++++++|+++|+|||+++||++|+++|++.++... .+.
T Consensus 724 ~~~~~l~~~~~~~~~~~li~EPGRylVa~AG~Llt~V~~ik~~~~~~fv~vDaGmn~liRPaLYga~H~I~~l~~~-~~~ 802 (865)
T PRK08961 724 AWDAGLAEVKAVHPGYRLWIEPGRYLVAEAGVLLARVTQVKEKDGVRRVGLDAGMNSLIRPALYDAWHEIENLSRL-DEP 802 (865)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCEEEECCEEEEEEEEEEEECCCCEEEEEECCCCCCCCHHHCCCCCCEEECCCC-CCC
T ss_conf 9999999976038996699968815121011899999999756983599994663455563541764530424777-888
Q ss_pred CEEEEEEEEEECCCCCEEEEEEECCC-CCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEE
Q ss_conf 61589998100056666562100566-88888999967970233340277889866599998
Q gi|254780371|r 334 LHIHADIVGPICETGDFIALNRKIAL-PRPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMVN 394 (431)
Q Consensus 334 ~~~~~~i~G~~C~~~D~l~~~~~lp~-l~~GD~l~i~~~GAY~~s~~s~fn~~p~p~~v~v~ 394 (431)
+...++|+||+|+|+|+|++++.||+ +++||+|+|.|+|||+++||||||+||+|+||+|+
T Consensus 803 ~~~~~~VvGPiCES~D~~~~~~~LP~~~~~GD~L~~~~aGAYg~smaS~yN~Rp~p~Evlvd 864 (865)
T PRK08961 803 PAGTADVVGPICESSDVFGKRRRLPAATAPGDVILIADTGAYGYSMASTYNLREPPREVVLD 864 (865)
T ss_pred CCCEEEEECCCCCCCCEEEECCCCCCCCCCCCEEEECCCCCCHHHHCCCCCCCCCCCEEEEC
T ss_conf 87656898378488627411562887689999999918984517762456689998767733
No 8
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE. This subfamily is composed of PvsE from Vibrio parahaemolyticus and similar proteins. PvsE is a vibrioferrin biosynthesis protein which is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. It has been suggested that PvsE may be involved in the biosynthesis of the polycarboxylate siderophore vibrioferrin. It may catalyze the decarboxylation of serine to yield ethanolamine. PvsE may require homodimer formation and the presence of the PLP cofactor for activity.
Probab=100.00 E-value=0 Score=670.26 Aligned_cols=366 Identities=25% Similarity=0.405 Sum_probs=340.8
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCEEECCCC
Q ss_conf 99789977999999999999861447978999641079999999999739928986899986522125784312444775
Q gi|254780371|r 26 QTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGVG 105 (431)
Q Consensus 26 gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~S~~El~~al~~G~~~~~Ii~~g~~ 105 (431)
.||.||||++.|++|+++|+++|+. +++++||+|||+++.|+++|.+.|+|+||+|.+|+++++.+| ++++|+|+||+
T Consensus 1 ~~~~YVyd~~~l~~~~~~l~~a~p~-~~~~~YAvKaN~~~~il~~l~~~G~g~DvaS~~El~~~~~~~-~~~~Iif~gp~ 78 (377)
T cd06843 1 PLCAYVYDLAALRAHARALRASLPP-GCELFYAIKANSDPPILRALAPHVDGFEVASGGEIAHVRAAV-PDAPLIFGGPG 78 (377)
T ss_pred CCCEEEECHHHHHHHHHHHHHHCCC-CCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCC-CCCCEEECCCC
T ss_conf 9867996099999999999985799-984999960388999999999769968982999999998539-99647988999
Q ss_pred CCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 42012444420687233332202467687741133442158998723778674433322334445688711113457776
Q gi|254780371|r 106 KTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYA 185 (431)
Q Consensus 106 k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~ 185 (431)
|++++|+.|++.|+.+|++||++||++|.+++++.++.++|+|||||+++.+.+..+.+|++.||||++.+++.++++.+
T Consensus 79 K~~~~l~~a~~~gv~~i~~DS~~El~~i~~~~~~~~~~~~v~lRinp~~~~~~~~~~~~~~~~sKFGi~~~~~~~~l~~~ 158 (377)
T cd06843 79 KTDSELAQALAQGVERIHVESELELRRLNAVARRAGRTAPVLLRVNLALPDLPSSTLTMGGQPTPFGIDEADLPDALELL 158 (377)
T ss_pred CCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999999998799889988999999999878861996289999967877777554205888877898989999999999
Q ss_pred HHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH-CCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 4156322002335564156442048999999998876531-026665268806873000266545531145655565421
Q gi|254780371|r 186 STLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLR-SNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQYF 264 (431)
Q Consensus 186 ~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~~~ 264 (431)
+++++|++.|||||+|||+.+++.|.++++.+.+++.++. +.|+++++||||||||++|..++.+++++.+++.+++.+
T Consensus 159 ~~~~~l~~~Glh~HvGS~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~~~iDiGGGf~v~y~~~~~~~d~~~~~~~i~~~~ 238 (377)
T cd06843 159 RDLPNIRLRGFHFHLMSHNLDAAAHLALVKAYLETARQWAAEHGLDLDVVNVGGGIGVNYADPEEQFDWAGFCEGLDQLL 238 (377)
T ss_pred HHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 82899856777773367888979999999999999999999719973146505862446788888889899999999999
Q ss_pred CCC--CCEEEEEECCEECCCCCEEEEEEEEECCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCCCCCC-------CCCCE
Q ss_conf 024--530344101112036632588876403468974220055300011001110246532222346-------77761
Q gi|254780371|r 265 GNL--QCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMNDFMRPTLYDAYHEINYIVNPA-------GDRLH 335 (431)
Q Consensus 265 ~~~--~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~vD~g~~~~~~p~~~~~~~~i~~~~~~~-------~~~~~ 335 (431)
++. +++|++|||||||++||+++|+|+++|++.+++|+++|+|+|++++|++|+++|++..+.... .....
T Consensus 239 ~~~~~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~~d~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (377)
T cd06843 239 AEYEPGLTLRFECGRYISAYCGYYVTEVLDLKRSHGEWFAVLRGGTHHFRLPAAWGHNHPFSVLPVEEWPYPWPRPSVRD 318 (377)
T ss_pred HHCCCCCEEEECCCCEEEECCEEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHHCCCCCEEEEECCCCCCCCCCCCCCC
T ss_conf 85299877997575278714349999999997519937999815534442413413668448875344555557766677
Q ss_pred EEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHH-CCCCCCCCCEEEEE
Q ss_conf 58999810005666656210056688888999967970233340-27788986659999
Q gi|254780371|r 336 IHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQS-GTYNSRLLIPEIMV 393 (431)
Q Consensus 336 ~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~s~~-s~fn~~p~p~~v~v 393 (431)
.+++|+||||+++|+|++++.||++++||+|+|.|||||+++|| +|||++|+|++|++
T Consensus 319 ~~~~v~Gp~C~s~D~l~~~~~lp~l~~GD~L~i~~~GAY~~s~s~~~fn~~p~P~~v~i 377 (377)
T cd06843 319 TPVTLVGQLCTPKDVLARDVPVDRLRAGDLVVFPLAGAYGWNISHHDFLMHPHPERIYL 377 (377)
T ss_pred CEEEEECCCCCCCCEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCEEEC
T ss_conf 56999916989988887366878899999999958873017560354349999988869
No 9
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=100.00 E-value=0 Score=667.70 Aligned_cols=362 Identities=41% Similarity=0.705 Sum_probs=338.8
Q ss_pred CCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCEEECCCCC
Q ss_conf 97899779999999999998614479789996410799999999997399289868999865221257843124447754
Q gi|254780371|r 27 TPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGVGK 106 (431)
Q Consensus 27 TP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~S~~El~~al~~G~~~~~Ii~~g~~k 106 (431)
||+||||++.|++|+++|+++|+. +++++||+|||+++.|++++.+.|+|+||+|++|+++|+++|+++++|+|+||+|
T Consensus 1 TP~yv~d~~~l~~~~~~~~~~~~~-~~~i~YAvKaN~~~~vl~~l~~~g~g~dvaS~~El~~al~~G~~~~~Ii~~gp~K 79 (368)
T cd06810 1 TPFYVYDLDIIRAHYAALKEALPS-GVKLFYAVKANPNPHVLRTLAEAGTGFDVASKGELALALAAGVPPERIIFTGPAK 79 (368)
T ss_pred CCEEEEEHHHHHHHHHHHHHHCCC-CCEEEEEECCCCCHHHHHHHHHHCCEEEEECHHHHHHHHHCCCCHHHEEEECCCC
T ss_conf 989998699999999999975799-9789999653899999999998599189779999999998599944199945545
Q ss_pred CCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 20124444206872333322024676877411334421589987237786744333223344456887111134577764
Q gi|254780371|r 107 TIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYAS 186 (431)
Q Consensus 107 ~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~~ 186 (431)
++++|+.|+++|+.+|++||++||++|.+++++.++.++|+|||||+.+.+++ ..++++.+||||++.+++.++++.++
T Consensus 80 ~~~~l~~a~~~gv~~i~~Ds~~El~~i~~~~~~~~~~~~i~lRinp~~~~~~~-~~~~~~~~sKFGi~~~~~~~~~~~~~ 158 (368)
T cd06810 80 SVSEIEAALASGVDHIVVDSLDELERLNELAKKLGPKARILLRVNPDVSAGTH-KISTGGLKSKFGLSLSEARAALERAK 158 (368)
T ss_pred CCHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCE-EECCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 30569999975978455579999999999998569997599999448787752-10368887767999999999999998
Q ss_pred HCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 15632200233556415644204899999999887653102666526880687300026654553114565556542102
Q gi|254780371|r 187 TLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQYFGN 266 (431)
Q Consensus 187 ~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~~~~~ 266 (431)
+. ++++.|||||+|||+.+++.|.++++.+.++++.+.+.|+++++||+|||||++|.. ..+++++|++.|++.+.+
T Consensus 159 ~~-~l~l~GlhfH~GS~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~idiGGGf~~~y~~--~~~~~~~~~~~i~~~~~~ 235 (368)
T cd06810 159 EL-DLRLVGLHFHVGSQILDLETIVQALSDARELIEELVEMGFPLEMLDLGGGLGIPYDE--QPLDFEEYAALINPLLKK 235 (368)
T ss_pred HC-CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCC--CCCCHHHHHHHHHHHHHH
T ss_conf 65-996789999768776886999999999999999998629985346437885777888--998999999999999998
Q ss_pred C-----CCEEEEEECCEECCCCCEEEEEEEEECCCCCCCCEEECCCCCCCCCCHH-HCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 4-----5303441011120366325888764034689742200553000110011-102465322223467776158999
Q gi|254780371|r 267 L-----QCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMNDFMRPTL-YDAYHEINYIVNPAGDRLHIHADI 340 (431)
Q Consensus 267 ~-----~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~vD~g~~~~~~p~~-~~~~~~i~~~~~~~~~~~~~~~~i 340 (431)
. ++++++|||||+|++||+++++|+++|+..+++|+++|+|+++++++++ ++++|++.++.....+.+..+++|
T Consensus 236 ~~~~~~~~~l~~EPGR~lva~ag~lv~~V~~~K~~~~~~~~~vd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 315 (368)
T cd06810 236 YFPNDPGVTLILEPGRYIVAQAGVLVTRVVAVKVNGGRFFAVVDGGMNHSFRPALAYDAYHPITPLKAPGPDEPLVPATL 315 (368)
T ss_pred HHCCCCCCEEEECCCHHHHHCCCCEEEEEEEEEECCCCEEEEECCCCCCCCCCHHHCCCCCCEEECCCCCCCCCEEEEEE
T ss_conf 72347896899866445652436199999999975997189976643455662321688464286178888898669999
Q ss_pred EEEECCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEE
Q ss_conf 81000566665621005668888899996797023334027788986659999
Q gi|254780371|r 341 VGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMV 393 (431)
Q Consensus 341 ~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~s~~s~fn~~p~p~~v~v 393 (431)
+||||+++|+|+++..+|++++||+|+|.|||||+++|++|||++|+|++|+|
T Consensus 316 ~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~s~~Fn~~~~pa~vli 368 (368)
T cd06810 316 AGPLCDSGDVIGRDRLLPELEVGDLLVFEDMGAYGFSESSNFNSHPRPAEYLV 368 (368)
T ss_pred ECCCCCCCCEEEECCCCCCCCCCCEEEECCCCHHHHHHHCCCCCCCCCCEEEC
T ss_conf 75588868799568857889999999776947324766177889999978979
No 10
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase. Bifunctional aspartate kinase/diaminopimelate decarboxylase (AspK/DapDC, EC 4.1.1.20/EC 2.7.2.4) typically exists in bacteria. These proteins contain an N-terminal AspK region and a C-terminal DapDC region, which contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, characteristic of fold type III PLP-dependent enzymes. Members of this subfamily have not been fully characterized. Based on their sequence, these proteins may catalyze both reactions catalyzed by AspK and DapDC. AspK catalyzes the phosphorylation of L-aspartate to produce 4-phospho-L-aspartate while DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine.
Probab=100.00 E-value=0 Score=668.64 Aligned_cols=363 Identities=30% Similarity=0.514 Sum_probs=338.0
Q ss_pred CHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHC--CC
Q ss_conf 2999999749978997799999999999986144797899964107999999999973992898689998652212--57
Q gi|254780371|r 17 SLEKLAHVVQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEGELRRALAA--PV 94 (431)
Q Consensus 17 ~l~~La~~~gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~S~~El~~al~~--G~ 94 (431)
.|.+|++++| ||||||++.|++|+++|+++++. .+++||+||||++.|+++|++.|+||||+|++|+++|+++ |+
T Consensus 3 ~l~~la~~~g-P~yVyd~~~i~~~~~~~~~~~~~--~~~~YAvKaN~~~~vl~~l~~~G~g~dvaS~~El~~al~~~~G~ 79 (368)
T cd06840 3 ALLRLAPDVG-PCYVYDLETVRARARQVSALKAV--DSLFYAIKANPHPDVLRTLEEAGLGFECVSIGELDLVLKLFPDL 79 (368)
T ss_pred HHHHHHCCCC-CEEEEEHHHHHHHHHHHHHCCCC--CCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHCCC
T ss_conf 7874205479-88998799999999999725787--81899970489999999999819986998999999999864699
Q ss_pred CCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 84312444775420124444206872333322024676877411334421589987237786744333223344456887
Q gi|254780371|r 95 PAERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIP 174 (431)
Q Consensus 95 ~~~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~ 174 (431)
++++|+|+||+|++++|+.|++.|+ .|++||++||+++.+++++ .+|+|||||+.+.+++..+++|+.+||||++
T Consensus 80 ~~~~Iv~~gp~K~~~~l~~A~~~gv-~i~~Ds~~el~~i~~~~~~----~~v~lRinp~~~~~~~~~~~~~~~~sKFG~~ 154 (368)
T cd06840 80 DPRRVLFTPNFAARSEYEQALELGV-NVTVDNLHPLREWPELFRG----REVILRIDPGQGEGHHKHVRTGGPESKFGLD 154 (368)
T ss_pred CHHHEEECCCCCCHHHHHHHHHCCC-EEEECCHHHHHHHHHHCCC----CEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 8688685678899999999998599-5998889999999875258----8089998268687666642058860247998
Q ss_pred CCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHH
Q ss_conf 11113457776415632200233556415644204899999999887653102666526880687300026654553114
Q gi|254780371|r 175 IHQIHSLYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSS 254 (431)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~ 254 (431)
++++.++++.++.. ++++.|||||+|||+.+++.|.++++.+.++++++. .+++||+|||||+||..++.+++++
T Consensus 155 ~~e~~~~l~~~~~~-~l~~~GlhfH~GS~~~~~~~~~~~~~~~~~~~~~~~----~~~~ldiGGGf~~~y~~~~~~~~~~ 229 (368)
T cd06840 155 VDELDEARDLAKKA-GIIVIGLHAHSGSGVEDTDHWARHGDYLASLARHFP----AVRILNVGGGLGIPEAPGGRPIDLD 229 (368)
T ss_pred HHHHHHHHHHHHHC-CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCC----CCCEEEECCCCCCCCCCCCCCCCHH
T ss_conf 78899999999857-993899998678777898999999999999997365----5234764476574788888864899
Q ss_pred HHHHHHHHHHCCC-CCEEEEEECCEECCCCCEEEEEEEEECCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCC
Q ss_conf 5655565421024-530344101112036632588876403468974220055300011001110246532222346777
Q gi|254780371|r 255 DYASLIHQYFGNL-QCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMNDFMRPTLYDAYHEINYIVNPAGDR 333 (431)
Q Consensus 255 ~~~~~i~~~~~~~-~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~vD~g~~~~~~p~~~~~~~~i~~~~~~~~~~ 333 (431)
.+.+.+.+..... +++||+|||||||++||+++|+|+++|++.+++|+++|+|+|++++|++|+++|++..+... ...
T Consensus 230 ~~~~~l~~~~~~~~~~~l~~EPGR~lva~ag~lvt~V~~~k~~~~~~~~~~d~G~~~~~~~~~~~~~~~~~~~~~~-~~~ 308 (368)
T cd06840 230 ALDAALAAAKAAHPQYQLWMEPGRFIVAESGVLLARVTQIKHKDGVRFVGLETGMNSLIRPALYGAYHEIVNLSRL-DEP 308 (368)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCHHHHCCCEEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHCCCCCCEEECCCC-CCC
T ss_conf 9999999998648997899814701322751799999999863883289988763455676770655502534778-888
Q ss_pred CEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEE
Q ss_conf 615899981000566665621005668888899996797023334027788986659999
Q gi|254780371|r 334 LHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMV 393 (431)
Q Consensus 334 ~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~s~~s~fn~~p~p~~v~v 393 (431)
+...++|+||||+++|+|++++.+|++++||+|+|.++|||+++|+||||++|+|++|||
T Consensus 309 ~~~~~~v~GptC~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~ss~fN~~p~p~~v~v 368 (368)
T cd06840 309 PAGNADVVGPICESGDVLGRDRLLPETEEGDVILIANAGAYGFCMASTYNLREPAEEVVL 368 (368)
T ss_pred CCEEEEEECCCCCCCCEECCCCCCCCCCCCCEEEECCCCHHHHHHHCCCCCCCCCCEEEC
T ss_conf 854899983796722298946317889999999776826112576487789999877879
No 11
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=100.00 E-value=0 Score=649.74 Aligned_cols=365 Identities=27% Similarity=0.426 Sum_probs=328.0
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCEEECCCC
Q ss_conf 99789977999999999999861447978999641079999999999739928986899986522125784312444775
Q gi|254780371|r 26 QTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGVG 105 (431)
Q Consensus 26 gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~S~~El~~al~~G~~~~~Ii~~g~~ 105 (431)
.+|++|||++.|++|+++|+++|+. +.+++||+||||++.|++++++.|+|+||+|.+|+++|+++||++++|+|+||+
T Consensus 2 ~~~~~vyD~~~i~~~~~~~~~afp~-~~~~~YAvKaN~~p~il~~l~~~G~g~DvaS~~El~~al~~G~~~~~Ii~~gp~ 80 (379)
T cd06836 2 HPAVGLYDLDGFRALVARLTAAFPA-PVLHTFAVKANPLVPVLRLLAEAGAGAEVASPGELELALAAGFPPERIVFDSPA 80 (379)
T ss_pred CCCEEEEEHHHHHHHHHHHHHHCCC-CCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHEEECCCC
T ss_conf 9858996299999999999985899-861899983389999999999849978973999999999859998998988998
Q ss_pred CCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCC-CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCH--HHH
Q ss_conf 42012444420687233332202467687741133-442158998723778674433322334445688711113--457
Q gi|254780371|r 106 KTIDEIDLALQSGIYCFNVESESELKTLNQRAVSL-GKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIH--SLY 182 (431)
Q Consensus 106 k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~-~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~--~~~ 182 (431)
|++++|+.|+++|+ .|++||++||++|.+++.+. ....+|+||+||+++.++++.+++|..+||||++.++.. .++
T Consensus 81 K~~~~l~~A~~~Gv-~i~vDs~~El~~i~~l~~~~~~~~~~i~lRinp~~~~~~~~~~~~~~~~sKFG~~~~~~~~~~~~ 159 (379)
T cd06836 81 KTRAELREALELGV-AINIDNFQELERIDALVAEFKEASSRIGLRVNPQVGAGKIGALSTATATSKFGVALEDGARDEII 159 (379)
T ss_pred CCHHHHHHHHHCCC-CCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 99999999997399-20348989999999999862997525899971687766754344689989858881477899999
Q ss_pred HHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC-CC-CCCCEEEECCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 77641563220023355641564420489999999988765310-26-66526880687300026654553114565556
Q gi|254780371|r 183 AYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRS-NG-HNIQHIDVGGGLGIAYHSDHRPPSSSDYASLI 260 (431)
Q Consensus 183 ~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~-~g-~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i 260 (431)
+... .++.+.|||||+|||+.+++.|.++++.+.++++++.. .| .++++||||||||++|..++.++++++|++.+
T Consensus 160 ~~~~--~~~~l~GlhfHvGSq~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ldiGGGf~v~y~~~~~~~~~~~~~~~i 237 (379)
T cd06836 160 DAFA--RRPWLNGLHVHVGSQGCELSLLAEGIRRVVDLAEEINRRVGRRQITRIDIGGGLPVNFESEDITPTFADYAAAL 237 (379)
T ss_pred HHHH--CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 9982--67970068987788888989999999999999999988608776326503787454678888898999999999
Q ss_pred HHHHCCC---CCEEEEEECCEECCCCCEEEEEEEEECCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCCCC----CCCCC
Q ss_conf 5421024---5303441011120366325888764034689742200553000110011102465322223----46777
Q gi|254780371|r 261 HQYFGNL---QCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMNDFMRPTLYDAYHEINYIVN----PAGDR 333 (431)
Q Consensus 261 ~~~~~~~---~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~vD~g~~~~~~p~~~~~~~~i~~~~~----~~~~~ 333 (431)
++.++++ +++||+|||||+|++||+++++|.++|+.++++|+++|+|+|++++++++...|+...... .....
T Consensus 238 ~~~l~~~f~~~~~li~EPGR~lva~ag~ll~~V~~vK~~~~~~~~i~d~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (379)
T cd06836 238 KAAVPELFDGRYQLVTEFGRSLLAKCGTIVSRVEYTKSSGGRRIAITHAGAQVATRTAYAPDDWPLRVTVFDANGEPKTG 317 (379)
T ss_pred HHHHHHHCCCCCEEEECCCCEEECCCEEEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC
T ss_conf 99999751668568860553230461599999999997398689999516655531002433374467840677786789
Q ss_pred CEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEE
Q ss_conf 6158999810005666656210056688888999967970233340277889866599998
Q gi|254780371|r 334 LHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMVN 394 (431)
Q Consensus 334 ~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~s~~s~fn~~p~p~~v~v~ 394 (431)
...+++|+||||+++|+|++++.||++++||+|+|.++|||+++|+||||++||||+|.|+
T Consensus 318 ~~~~~~v~Gp~C~~~D~l~~~~~lP~l~~GD~l~i~~~GAY~~s~~s~fN~~prPav~~v~ 378 (379)
T cd06836 318 PEVVTDVAGPCCFAGDVLAKERALPPLEPGDYVAVHDTGAYYFSSHSSYNSLPRPAVYGVR 378 (379)
T ss_pred CEEEEEEECCCCCCCCEECCCCCCCCCCCCCEEEECCCCCCHHHHHCCCCCCCCCCEEEEE
T ss_conf 8349999866878587986364888899999999879770506561888799888289972
No 12
>cd06841 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE. This subfamily is composed of uncharacterized proteins with similarity to Escherichia coli MccE, a hypothetical protein that is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Most members of this subfamily share the same domain architecture as ODC and DapDC. A few members, including Escherichia coli MccE, contain an additional acetyltransferase domain at the C-terminus.
Probab=100.00 E-value=0 Score=649.84 Aligned_cols=361 Identities=28% Similarity=0.446 Sum_probs=323.4
Q ss_pred HHHHCCCCEEEEEHHHHHHHHHHHHHHCCC--CCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCC
Q ss_conf 999749978997799999999999986144--797899964107999999999973992898689998652212578431
Q gi|254780371|r 21 LAHVVQTPFYCYSTTAIEKNYLTFSNAFDG--MDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEGELRRALAAPVPAER 98 (431)
Q Consensus 21 La~~~gTP~yV~d~~~i~~n~~~l~~a~~~--~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~S~~El~~al~~G~~~~~ 98 (431)
|+++|||||||||++.|++|+++|+++|+. ++++++||+|||+++.|++++.+.|+|+||+|.+|+++|+++|+++++
T Consensus 1 La~~~gTP~yv~d~~~l~~n~~~l~~~~~~~~p~~~i~YAvKaN~~~~vl~~l~~~G~g~DvaS~~El~~al~~g~~~~~ 80 (379)
T cd06841 1 LLESYGSPFFVFDEDALRENYRELLGAFKKRYPNVVIAYSYKTNYLPAICKILHEEGGYAEVVSAMEYELALKLGVPGKR 80 (379)
T ss_pred CCHHHCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCE
T ss_conf 91420998899869999999999999987608982999996217589999999983998599899999999985999322
Q ss_pred EEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 24447754201244442068723333220246768774113344215899872377867443332233444568871111
Q gi|254780371|r 99 IVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQI 178 (431)
Q Consensus 99 Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~ 178 (431)
|+|+||+|++++|+.|+++|+ .|++||++||+++.+++++.++.++|+||+||+.+ ++..||||++.+++
T Consensus 81 Ii~~gp~K~~~~i~~a~~~g~-~i~vDs~~El~~l~~~a~~~~~~~~i~lRvn~~~~---------~~~~skFG~~~~~~ 150 (379)
T cd06841 81 IIFNGPYKSKEELEKALEEGA-LINIDSFDELERILEIAKELGRVAKVGIRLNMNYG---------NNVWSRFGFDIEEN 150 (379)
T ss_pred EEECCCCCCHHHHHHHHHCCC-CCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCC---------CCCCCCCCCCHHHH
T ss_conf 998899898799999998599-30448889999999999864997479999658888---------88643469998999
Q ss_pred HHHHHHHH---HCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCC------CCCCCC
Q ss_conf 34577764---156322002335564156442048999999998876531026665268806873000------266545
Q gi|254780371|r 179 HSLYAYAS---TLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIA------YHSDHR 249 (431)
Q Consensus 179 ~~~~~~~~---~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~------y~~~~~ 249 (431)
.++++.++ ..+++++.|||||+|||+.+++.|.++++.+.+++.++ .++++++||+|||||++ |...+.
T Consensus 151 ~~~l~~~~~~~~~~~l~~~GlhfHvGS~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~idiGGGf~~~~~~~~~~~~~~~ 228 (379)
T cd06841 151 GEALAALKKIQESKNLSLVGLHCHVGSNILNPEAYSAAAKKLIELLDRL--FGLELEYLDLGGGFPAKTPLSLAYPQEDT 228 (379)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 9999999987545897299999888987589899999999999999996--19996099807875767776545678889
Q ss_pred CCCHHHHHHHHHHHHCCC------CCEEEEEECCEECCCCCEEEEEEEEECCCCCCCCEEECCCCCCCCCCHHHCCCCCC
Q ss_conf 531145655565421024------53034410111203663258887640346897422005530001100111024653
Q gi|254780371|r 250 PPSSSDYASLIHQYFGNL------QCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMNDFMRPTLYDAYHEI 323 (431)
Q Consensus 250 ~~~~~~~~~~i~~~~~~~------~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~vD~g~~~~~~p~~~~~~~~i 323 (431)
.+++++|++.|.+.+++. +++|++|||||+|++||+++++|+++|+..+++|+++|+|+|++.++.++ .|++
T Consensus 229 ~~~~~~~~~~i~~~l~~~~~~~~~~~~li~EPGR~lv~~ag~lv~~V~~~K~~~~~~~~~~D~g~~~~~~~~~~--~~~~ 306 (379)
T cd06841 229 VPDPEDYAEAIASTLKEYYANKENKPKLILEPGRALVDDAGYLLGRVVAVKNRYGRNIAVTDAGINNIPTIFWY--HHPI 306 (379)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHCCEEEEEEEEEEEEECCCEEEEECCCCCCCCCHHHC--CCCE
T ss_conf 99999999999999998551027886699816711111415799999999960992799982664577174656--9877
Q ss_pred CCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECC
Q ss_conf 2222346777615899981000566665621005668888899996797023334027788986659999889
Q gi|254780371|r 324 NYIVNPAGDRLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMVNGS 396 (431)
Q Consensus 324 ~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~s~~s~fn~~p~p~~v~v~~g 396 (431)
.+............++|+||+|+++|+|+++..+|++++||+|+|.|||||++||+|+|| +|||++|+|+++
T Consensus 307 ~~~~~~~~~~~~~~~~v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~ss~f~-~prPa~vlv~~~ 378 (379)
T cd06841 307 LVLRPGKEDPTSKNYDVYGFNCMESDVLFPNVPLPPLNVGDILAIRNVGAYNMTQSNQFI-RPRPAVYLIDNN 378 (379)
T ss_pred EEECCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEECCCCHHHHHHHCCCC-CCCCCEEEEECC
T ss_conf 955788888983089998878663569903513789999999978783754574618788-877829999398
No 13
>cd00622 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this su
Probab=100.00 E-value=0 Score=635.89 Aligned_cols=353 Identities=28% Similarity=0.439 Sum_probs=314.0
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCEEECCCC
Q ss_conf 99789977999999999999861447978999641079999999999739928986899986522125784312444775
Q gi|254780371|r 26 QTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGVG 105 (431)
Q Consensus 26 gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~S~~El~~al~~G~~~~~Ii~~g~~ 105 (431)
+|||||||++.|++|+++|+++|| +.+++||+|||+++.|++.+++.|+|+||+|++|+++|+++|+++++|+|+||+
T Consensus 1 ~TP~yvyd~~~i~~~~~~l~~afp--~~~i~YA~KaN~~~~vl~~l~~~G~g~dv~S~~El~~al~~G~~~~~Iif~gp~ 78 (362)
T cd00622 1 ETPFLVVDLGDVVRKYRRWKKALP--RVRPFYAVKCNPDPAVLRTLAALGAGFDCASKGEIELVLGLGVSPERIIFANPC 78 (362)
T ss_pred CCCEEEEEHHHHHHHHHHHHHHCC--CCEEEEEECCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCHHHEEECCCC
T ss_conf 998899459999999999998689--987999966589899999999739919982999999999849987895845887
Q ss_pred CCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 42012444420687233332202467687741133442158998723778674433322334445688711113457776
Q gi|254780371|r 106 KTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYA 185 (431)
Q Consensus 106 k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~ 185 (431)
|++++|+.|+++|+.+|++||++||++|.+.+++ .+|+|||||+.....+ ..++||||+.+++.++++.+
T Consensus 79 K~~~el~~a~~~gv~~i~vDS~~EL~~i~~~~~~----~~i~lRv~~~~~~~~~------~~~~KFGi~~~~~~~~l~~~ 148 (362)
T cd00622 79 KSISDIRYAAELGVRLFTFDSEDELEKIAKHAPG----AKLLLRIATDDSGALC------PLSRKFGADPEEARELLRRA 148 (362)
T ss_pred CCHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCC----CCEEEEECCCCCCCCC------CCCCCCCCCHHHHHHHHHHH
T ss_conf 8879999999749966772789999999986777----8269998669998733------57775799999999999999
Q ss_pred HHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 41563220023355641564420489999999988765310266652688068730002665455311456555654210
Q gi|254780371|r 186 STLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQYFG 265 (431)
Q Consensus 186 ~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~~~~ 265 (431)
++. ++++.|||||+|||+.+++.|.++++.+.++++.+++.|+++++||+|||||++|..+ .+++++|++.|++.++
T Consensus 149 ~~~-~l~~~GlH~H~GS~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~idiGGG~~~~y~~~--~~~~~~~~~~i~~~~~ 225 (362)
T cd00622 149 KEL-GLNVVGVSFHVGSQCTDPSAYVDAIADAREVFDEAAELGFKLKLLDIGGGFPGSYDGV--VPSFEEIAAVINRALD 225 (362)
T ss_pred HHC-CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCC--CCCHHHHHHHHHHHHH
T ss_conf 862-9956889987687768979999999999999999997599976798379836788889--9998999999999999
Q ss_pred C----CCCEEEEEECCEECCCCCEEEEEEEEECCCCCC---CCEEECCCCCCCCCCHHHC-CCCCCCCCCCCCCCCCEEE
Q ss_conf 2----453034410111203663258887640346897---4220055300011001110-2465322223467776158
Q gi|254780371|r 266 N----LQCKIILEPGRFLVADVGILVTKVISIKKSADK---TFVILDVAMNDFMRPTLYD-AYHEINYIVNPAGDRLHIH 337 (431)
Q Consensus 266 ~----~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~---~~~~vD~g~~~~~~p~~~~-~~~~i~~~~~~~~~~~~~~ 337 (431)
+ .+++|++|||||||++||+++|+|+++|+..+. .|+++|+|+++.+.+.++. .++++..+.......+..+
T Consensus 226 ~~~~~~~~~l~~EPGR~lva~ag~llt~V~~~K~~~~~~~~~~~~vd~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (362)
T cd00622 226 EYFPDEGVRIIAEPGRYLVASAFTLAVNVIAKRKRGDDDRERWYYLNDGVYGSFNEILFDHIRYPPRVLKDGGRDGELYP 305 (362)
T ss_pred HHCCCCCCEEEECCHHHHCCCEEEEEEEEEEEEECCCCCCEEEEEECCCCCCHHHHHHHCCCCCCEEEECCCCCCCCCEE
T ss_conf 86486797799856045201407999999999860788726999984787511546764377671681058887898018
Q ss_pred EEEEEEECCCCCEEEEEEECC-CCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEE
Q ss_conf 999810005666656210056-68888899996797023334027788986659999
Q gi|254780371|r 338 ADIVGPICETGDFIALNRKIA-LPRPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMV 393 (431)
Q Consensus 338 ~~i~G~~C~~~D~l~~~~~lp-~l~~GD~l~i~~~GAY~~s~~s~fn~~p~p~~v~v 393 (431)
++|+||+|+++|+|++++.|| .+++||+|+|.|||||++||+||||++|+|++|+|
T Consensus 306 ~~v~G~~C~~~D~l~~~~~lP~~l~~GD~l~i~~~GAY~~smss~fN~~p~p~~V~v 362 (362)
T cd00622 306 SSLWGPTCDSLDVIYEDVLLPEDLAVGDWLLFENMGAYTTAYASTFNGFPPPKIVYV 362 (362)
T ss_pred EEEECCCCCCCCEEEECCCCCCCCCCCCEEEECCCCCCHHHHHCCCCCCCCCCEEEC
T ss_conf 999844888886983566578889999999995987051756287789899948969
No 14
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases.
Probab=100.00 E-value=0 Score=633.67 Aligned_cols=362 Identities=26% Similarity=0.374 Sum_probs=299.8
Q ss_pred HHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCC--CCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCC
Q ss_conf 999999749978997799999999999986144--797899964107999999999973992898689998652212578
Q gi|254780371|r 18 LEKLAHVVQTPFYCYSTTAIEKNYLTFSNAFDG--MDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEGELRRALAAPVP 95 (431)
Q Consensus 18 l~~La~~~gTP~yV~d~~~i~~n~~~l~~a~~~--~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~S~~El~~al~~G~~ 95 (431)
|.+||++|||||||||+++|++|+++|+++|+. .+++++||+|||+++.|+++++++|+|+||+|++|+++|+++|++
T Consensus 1 l~~La~~yGTP~yVyd~~~ir~n~~~l~~a~~~~~~~~~i~YAvKAN~~~~il~~l~~~G~g~Dv~S~gEl~~al~aG~~ 80 (423)
T cd06842 1 LVALVEAYGSPLNVLFPQTFRENIAALRAVLDRHGVDGRVYFARKANKSLALVRAAAAAGIGVDVASLAELRQALAAGVR 80 (423)
T ss_pred CHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCC
T ss_conf 96898866999799769999999999999987559982699986106899999999984992898699999999985998
Q ss_pred CCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCC-CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 431244477542012444420687233332202467687741133-4421589987237786744333223344456887
Q gi|254780371|r 96 AERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSL-GKKAPIAFRVNPDINANTHKKISTGKKEDKFGIP 174 (431)
Q Consensus 96 ~~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~-~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~ 174 (431)
+++|+|+||+|+.++|+.|++.|+ .||+||++||++|.+++++. ++.++|+||+||+ ++...|||||+
T Consensus 81 ~~~Iv~~g~~Ks~~ei~~Ai~~gv-~i~vDs~~El~~l~~~a~~~~~~~~~V~lRvnp~----------~~~~~sKFGi~ 149 (423)
T cd06842 81 GDRIVATGPAKTDEFLWLAVRHGA-TIAVDSLDELDRLLALARGYTTGPARVLLRLSPF----------PASLPSRFGMP 149 (423)
T ss_pred HHHEEECCCCCCHHHHHHHHHCCC-EEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCC----------CCCCCCCCCCC
T ss_conf 799897389899899999998599-8997899999999999876079962799986789----------99999999899
Q ss_pred CCCCHHHHHHHHHC-CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCC-
Q ss_conf 11113457776415-6322002335564156442048999999998876531026665268806873000266545531-
Q gi|254780371|r 175 IHQIHSLYAYASTL-PGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPS- 252 (431)
Q Consensus 175 ~~~~~~~~~~~~~~-~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~- 252 (431)
.+++.++++.+.+. +++++.|||||+||+ +.+.+..+++.+.++++.+++.|+++++||+|||||++|..++..++
T Consensus 150 ~~~~~~~l~~~~~~~~~l~~~GlH~HiGs~--~~~~~~~a~~~~~~~~~~~~~~g~~l~~idiGGGfgv~Y~~~~~~~~~ 227 (423)
T cd06842 150 AAEVRTALERLAQLRERVRLVGFHFHLDGY--SAAQRVAALQECLPLIDRARALGLAPRFIDIGGGFPVSYLADAAEWEA 227 (423)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEECCCC--CHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHH
T ss_conf 999999999999639998368988864887--727899999999999999995299977897189977677663102344
Q ss_pred ---------------------------------------HHHHHHH-----------HHHHHCCCCCEEEEEECCEECCC
Q ss_conf ---------------------------------------1456555-----------65421024530344101112036
Q gi|254780371|r 253 ---------------------------------------SSDYASL-----------IHQYFGNLQCKIILEPGRFLVAD 282 (431)
Q Consensus 253 ---------------------------------------~~~~~~~-----------i~~~~~~~~~~l~~EPGR~lva~ 282 (431)
..+|... +++.+...+++|++||||+||++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~iEPGR~lva~ 307 (423)
T cd06842 228 FLAALTEALYGYGRPLTWRNEGGTLRGPDDFYPYGQPLVAADWLRAILSAPLPQGRTIAERLRDNGITLALEPGRALLDQ 307 (423)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHCC
T ss_conf 33331011102354321112233456653334345675277899998741222224577764256855997665565225
Q ss_pred CCEEEEEEEEECCCCCCCCE-EECCCCCCCCCCHHHCC-CCCCCC-CCCCCCCCCEEEEEEEEEECCCCCEEEEE-EECC
Q ss_conf 63258887640346897422-00553000110011102-465322-22346777615899981000566665621-0056
Q gi|254780371|r 283 VGILVTKVISIKKSADKTFV-ILDVAMNDFMRPTLYDA-YHEINY-IVNPAGDRLHIHADIVGPICETGDFIALN-RKIA 358 (431)
Q Consensus 283 ag~ll~~V~~vK~~~~~~~~-~vD~g~~~~~~p~~~~~-~~~i~~-~~~~~~~~~~~~~~i~G~~C~~~D~l~~~-~~lp 358 (431)
||++||+|.++|+..+.+|+ .+|+++.. .++..++. .+|... ............++|+||+|+++|+|+++ ..||
T Consensus 308 aG~llt~V~~vK~~~~~~~~v~~~g~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~v~Gp~C~s~D~l~~~~~~lP 386 (423)
T cd06842 308 CGLTVARVAFVKQLGDGNHLIGLEGNSFS-ACEFSSEFLVDPLLIPAPEPTTDGAPIEAYLAGASCLESDLITRRKIPFP 386 (423)
T ss_pred CCEEEEEEEEEEECCCCCEEEEECCCCCC-CCHHHCHHCCCCEEECCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCC
T ss_conf 52499999999765998589996688754-10121100047457436777778885389999816679815860556675
Q ss_pred C-CCCCCEEEEECCCCHHH-HHHCCCCCCCCCEEEEE
Q ss_conf 6-88888999967970233-34027788986659999
Q gi|254780371|r 359 L-PRPGDLLYIEKTGAYGA-VQSGTYNSRLLIPEIMV 393 (431)
Q Consensus 359 ~-l~~GD~l~i~~~GAY~~-s~~s~fn~~p~p~~v~v 393 (431)
+ +++||+|+|.++|||++ +|+||||++|+|++|+|
T Consensus 387 ~~~~~GD~l~i~~~GAY~~~~~as~fN~~P~P~~V~V 423 (423)
T cd06842 387 RLPKPGDLLVFPNTAGYQMDFLESRFHRHPLPRRVVV 423 (423)
T ss_pred CCCCCCCEEEECCCCCCCCCCCHHHCCCCCCCCEEEC
T ss_conf 6799999999938630268422123049999988769
No 15
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase. This subfamily includes plants and biosynthetic prokaryotic arginine decarboxylases (ADC, EC 4.1.1.19). ADC is involved in the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. It catalyzes the decarboxylation of L-arginine to agmatine, which is then hydrolyzed to putrescine by agmatinase. ADC is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Homodimer formation and the presence of both PLP and Mg2+ cofactors may be required for catalytic activity. Prokaryotic ADCs (biodegradative), which are fold type I PLP-dependent enzymes, are not included in this family.
Probab=100.00 E-value=0 Score=624.12 Aligned_cols=368 Identities=22% Similarity=0.270 Sum_probs=318.8
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHCCCC--------CCEEEEEEECCCCHHHHHHHHHCC----CCEEEECHHHHHHHH
Q ss_conf 97499789977999999999999861447--------978999641079999999999739----928986899986522
Q gi|254780371|r 23 HVVQTPFYCYSTTAIEKNYLTFSNAFDGM--------DTMVCYALKANSNQAVIKTLAHLG----SGLDIVSEGELRRAL 90 (431)
Q Consensus 23 ~~~gTP~yV~d~~~i~~n~~~l~~a~~~~--------~~~i~yAvKaN~~~~il~~l~~~G----~g~dv~S~~El~~al 90 (431)
++|||||||||++.|++|+++++++|... +.+++||+|||+++.|++.+.++| +|+||+|.+|+++|+
T Consensus 1 ~~yGTPLyV~d~~~ir~~~~~~~~aF~~~~~~~~y~~~~~~~YAvKAN~n~~vl~~l~~~G~~~~~G~DvvS~gEl~~al 80 (409)
T cd06830 1 RGYGLPLLLRFPDILRHRIERLNAAFAKAIEEYGYKGKYQGVYPIKVNQQREVVEEIVKAGKRYNIGLEAGSKPELLAAL 80 (409)
T ss_pred CCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHHCCCCCCCCEEEECHHHHHHHH
T ss_conf 99899799970999999999999999999997287876289998720680999999997397558836896899999999
Q ss_pred HCCCCCCCEEECCCCCCCHHHHHHHHCCCC----CCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 125784312444775420124444206872----3333220246768774113344215899872377867443332233
Q gi|254780371|r 91 AAPVPAERIVFSGVGKTIDEIDLALQSGIY----CFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGK 166 (431)
Q Consensus 91 ~~G~~~~~Ii~~g~~k~~~~l~~ai~~gv~----~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~ 166 (431)
++|++|++++|.|++|+.++|+.|+..++. +|++||++||++|.+++++.+++++|+|||||++...+| .+.|++
T Consensus 81 ~ag~~p~~ii~~~~~K~~~~i~~a~~~~~~~~~v~iviDs~~El~~i~~~a~~~~~~~~v~lRinp~~~~~~~-~~~t~g 159 (409)
T cd06830 81 ALLKTPDALIICNGYKDDEYIELALLARKLGHNVIIVIEKLSELDLILELAKKLGVKPLLGVRIKLASKGSGK-WQESGG 159 (409)
T ss_pred HCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCC-CCCCCC
T ss_conf 7699999699949989999999999847567653664599999999999999709995078998536688876-411378
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCC-CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCC
Q ss_conf 4445688711113457776415632-200233556415644204899999999887653102666526880687300026
Q gi|254780371|r 167 KEDKFGIPIHQIHSLYAYASTLPGV-KISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYH 245 (431)
Q Consensus 167 ~~sKFGi~~~~~~~~~~~~~~~~~l-~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~ 245 (431)
++||||++.+++.++++.+++...+ ++.|||||+|||+.+++.|..+++.+.+++.++++.|+++++||+|||||++|.
T Consensus 160 ~~sKFGi~~~~~~~~~~~~~~~~~~~~l~glH~HIGSQi~d~~~~~~a~~~~~~~~~~l~~~g~~l~~ldlGGGfgi~Y~ 239 (409)
T cd06830 160 DRSKFGLTASEILEVVEKLKEAGMLDRLKLLHFHIGSQITDIRRIKSALREAARIYAELRKLGANLRYLDIGGGLGVDYD 239 (409)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCC
T ss_conf 63135999999999999998579977556899852789888899999999999999999984899526750675554568
Q ss_pred CCCCCC------CHHHHHHHHHHHHCC----C---CCEEEEEECCEECCCCCEEEEEEEEECCCCCCCCEEECCCCCCCC
Q ss_conf 654553------114565556542102----4---530344101112036632588876403468974220055300011
Q gi|254780371|r 246 SDHRPP------SSSDYASLIHQYFGN----L---QCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMNDFM 312 (431)
Q Consensus 246 ~~~~~~------~~~~~~~~i~~~~~~----~---~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~vD~g~~~~~ 312 (431)
.++.++ ++++|++.|.+.+++ . .|+|++||||||||+||++|++|.++|+... ++.+.++.++.++
T Consensus 240 ~~~~~~~~~~~~dl~~~a~~i~~~~~~~~~~~~~~~p~li~EPGR~iVa~AGvll~~V~~vK~~~~-~~~i~~~~~~~l~ 318 (409)
T cd06830 240 GSRSSSDSSFNYSLEEYANDIVKTVKEICDEAGVPHPTIVTESGRAIVAHHSVLIFEVLGVKRLAD-WYFCNFSLFQSLP 318 (409)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHEEEEEEEEEEEEEEEEECCC-EEEEECCCCCCCC
T ss_conf 767787654102299999999999999999729999759981473210100289999899975152-6875032335565
Q ss_pred CCHHHCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEE---------EECCCCC--CCCEEEEECCCCHHHHHHCC
Q ss_conf 001110246532222346777615899981000566665621---------0056688--88899996797023334027
Q gi|254780371|r 313 RPTLYDAYHEINYIVNPAGDRLHIHADIVGPICETGDFIALN---------RKIALPR--PGDLLYIEKTGAYGAVQSGT 381 (431)
Q Consensus 313 ~p~~~~~~~~i~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~---------~~lp~l~--~GD~l~i~~~GAY~~s~~s~ 381 (431)
++.+++++|++.++ ++..+.+...++++||+|+|+|++.++ .++|.++ .||+|+|.++|||++|||||
T Consensus 319 d~~~~~~~~~~~~~-~~~~~~~~~~~~v~G~~CES~d~~~~~~~~~~~~~~~~lp~~~~~egdlla~~~aGAYg~sMsSn 397 (409)
T cd06830 319 DSWAIDQLFPIMPL-HRLNEKPTRRAVLGDITCDSDGKIDSFIDPPDILPTLPLHPLRKDEPYYLGFFLVGAYQEILGDL 397 (409)
T ss_pred CHHHHCCCCEEEEC-CCCCCCCCEEEEEEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHCC
T ss_conf 53450565526653-55778870578998536014980322056643223466776678998789993367024787666
Q ss_pred CCCCCCCEEEEE
Q ss_conf 788986659999
Q gi|254780371|r 382 YNSRLLIPEIMV 393 (431)
Q Consensus 382 fn~~p~p~~v~v 393 (431)
||++++|++|.|
T Consensus 398 YN~~g~~~~v~v 409 (409)
T cd06830 398 HNLFGDTNAVHV 409 (409)
T ss_pred CCCCCCCCEEEC
T ss_conf 568999887769
No 16
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=100.00 E-value=0 Score=588.19 Aligned_cols=353 Identities=21% Similarity=0.303 Sum_probs=299.6
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCEEECCCC
Q ss_conf 99789977999999999999861447978999641079999999999739928986899986522125784312444775
Q gi|254780371|r 26 QTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGVG 105 (431)
Q Consensus 26 gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~S~~El~~al~~G~~~~~Ii~~g~~ 105 (431)
.|||||||++.|++++++|+++||+ .+++||+||||++.||+.|++.|+||||+|.+|+++|+++|++|++|+|+||+
T Consensus 12 ~~~fyvyD~~~i~~~~~~~~~~lp~--v~~~YAvKaN~~~~il~~L~~~G~g~DvaS~gEl~~al~aG~~p~~Iif~gp~ 89 (394)
T cd06831 12 KNAFFVGDLGKIVKKHSQWQTVMAQ--IKPFYTVRCNSTPAVLEILAALGTGFACSSKNEMALVQELGVSPENIIYTNPC 89 (394)
T ss_pred CCCEEEEEHHHHHHHHHHHHHHCCC--CCEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHEEECCCC
T ss_conf 9987995899999999999986899--85787862499899999999749988986999999999869987997977999
Q ss_pred CCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 42012444420687233332202467687741133442158998723778674433322334445688711113457776
Q gi|254780371|r 106 KTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYA 185 (431)
Q Consensus 106 k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~ 185 (431)
|++++|+.|++.|+..+++||++||++|.+.. +..++++|||++...++ +...+|||++.+++.++++.+
T Consensus 90 Kt~~ei~~A~~~GV~~~~~Ds~~EL~ki~r~~----~~~~v~lri~~~~~~~~------~~~~~KFG~~~~~~~~ll~~~ 159 (394)
T cd06831 90 KQASQIKYAAKVGVNIMTCDNEIELKKIARNH----PNAKLLLHIATEDNIGG------EEMNMKFGTTLKNCRHLLECA 159 (394)
T ss_pred CCHHHHHHHHHCCCCEEECCCHHHHHHHHHHC----CCCCEEEEEECCCCCCC------CCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999999998599778537689999999878----99960788734777777------756765456799999999999
Q ss_pred HHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 41563220023355641564420489999999988765310266652688068730002665455311456555654210
Q gi|254780371|r 186 STLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQYFG 265 (431)
Q Consensus 186 ~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~~~~ 265 (431)
++. ++++.|||||+|||+.+++.|.++++.+..+++..++.|+++++|||||||+. ..++++++...++..+.
T Consensus 160 ~~~-~l~~~Glh~HvGSq~~~~~~~~~a~~~~~~v~dl~~~~g~~~~~lDiGGGf~~------~~~~~~~~~~~i~~~~~ 232 (394)
T cd06831 160 KEL-DVQIVGVKFHVSSSCKEYQTYVHALSDARCVFDMAEEFGFKMNMLDIGGGFTG------SEIQLEEVNHVIRPLLD 232 (394)
T ss_pred HHC-CCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC------CCCCHHHHHHHHHHHHH
T ss_conf 864-98699985331577688499999999999999999971999748987899887------77897999999999999
Q ss_pred C-----CCCEEEEEECCEECCCCCEEEEEEEEECCCCCCCCEEECCCCC-------CCCCCHHHCCCCCCC--------C
Q ss_conf 2-----4530344101112036632588876403468974220055300-------011001110246532--------2
Q gi|254780371|r 266 N-----LQCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMN-------DFMRPTLYDAYHEIN--------Y 325 (431)
Q Consensus 266 ~-----~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~vD~g~~-------~~~~p~~~~~~~~i~--------~ 325 (431)
. .++++++|||||+|++||+++|+|+++|...++.++..++... ..+++++|++++... .
T Consensus 233 ~~f~~~~~~~li~EPGR~lva~ag~l~t~Vi~~k~~~~~~~~~~~~~~~~~~~~~~~~i~~g~yg~~~~~~~~~~~~~~~ 312 (394)
T cd06831 233 VYFPEGSGIQIIAEPGSYYVSSAFTLAVNVIAKKAVENDKHLSSVEKNGSDEPAFVYYMNDGVYGSFASKLSEKLNTTPE 312 (394)
T ss_pred HHCCCCCCCEEEECCCCEEEECCEEEEEEEEEEEEECCCEEEEECCCCCCCCHHHEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 86634689779950796786522589999998885146237763233466650011465400000466766532356733
Q ss_pred C-CCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCE
Q ss_conf 2-23467776158999810005666656210056688888999967970233340277889866599998896
Q gi|254780371|r 326 I-VNPAGDRLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMVNGSQ 397 (431)
Q Consensus 326 ~-~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~s~~s~fn~~p~p~~v~v~~g~ 397 (431)
+ .....+.+...++|+||+|+++|+|++++.||++++||+|+|.++|||+++|+|+||++|+||++.+.+++
T Consensus 313 ~~~~~~~~~~~~~~tv~Gp~C~s~Dvl~~~~~LP~l~~GD~L~i~~~GAY~~sm~s~fNg~~rPav~~~~~~~ 385 (394)
T cd06831 313 VHKKYKEDEPLFTSSLWGPSCDELDQIVESCLLPELNVGDWLIFDNMGAGSLHEPSTFNDFQRPAIYYMMSFS 385 (394)
T ss_pred CCCCCCCCCCEEEEEEEECCCCCCCEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEECHH
T ss_conf 2345567897578588963867756989366889999999999848987840105788898998289997788
No 17
>cd06829 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase. Carboxynorspermidine decarboxylase (CANSDC) catalyzes the decarboxylation of carboxynorspermidine, the last step in the biosynthesis of norspermidine. It is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Based on this similarity, CANSDC may require homodimer formation and the presence of the PLP cofactor for its catalytic activity.
Probab=100.00 E-value=0 Score=588.06 Aligned_cols=346 Identities=20% Similarity=0.253 Sum_probs=295.1
Q ss_pred CCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCEEECCCCC
Q ss_conf 97899779999999999998614479789996410799999999997399289868999865221257843124447754
Q gi|254780371|r 27 TPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGVGK 106 (431)
Q Consensus 27 TP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~S~~El~~al~~G~~~~~Ii~~g~~k 106 (431)
|||||||++.|++|+++|+++++..+.+++||+|||+++.|+++|.+.|+|+||+|.+|+++|+.+ ++.+.++| +|+|
T Consensus 1 TP~YVyd~~~i~~n~~~~~~~~~~~~~~i~YA~KAN~~~~il~~l~~~g~G~d~~S~~E~~la~~~-~~~~~~~~-~~~~ 78 (346)
T cd06829 1 TPCYVLDEAKLRRNLEILKRVQERSGAKILLALKAFSMWSVFPLIREYLDGTTASSLFEARLGREE-FGGEVHTY-SPAY 78 (346)
T ss_pred CCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEEEHHCCCHHHHHHHHHHCCEEEECCHHHHHHHHHH-CCCCCEEE-CCCC
T ss_conf 989997599999999999997733898799988242888999999974996997499999997410-68764675-6879
Q ss_pred CCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 20124444206872333322024676877411334421589987237786744333223344456887111134577764
Q gi|254780371|r 107 TIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYAS 186 (431)
Q Consensus 107 ~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~~ 186 (431)
+++||+.+++.+. .|++||++||+++.+++++.+ .+|+|||||+++.++|+.++||+..||||++.+++.+.+.
T Consensus 79 ~~~el~~~~~~~~-~i~~ds~~El~~i~~~~~~~~--~~V~lRINP~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~--- 152 (346)
T cd06829 79 RDDEIDEILRLAD-HIIFNSLSQLERFKDRAKAAG--ISVGLRINPEYSEVETDLYDPCAPGSRLGVTLDELEEEDL--- 152 (346)
T ss_pred CHHHHHHHHHCCC-EEEECCHHHHHHHHHHHCCCC--CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH---
T ss_conf 9899999997299-899889999999998740589--7499998589877767660578984403787999878777---
Q ss_pred HCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 15632200233556415644204899999999887653102666526880687300026654553114565556542102
Q gi|254780371|r 187 TLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQYFGN 266 (431)
Q Consensus 187 ~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~~~~~ 266 (431)
. .+.|+|||++||. +.+.+.+.++.+.+. +.+...++++||+||||+++|. ..+++.+++.+++..++
T Consensus 153 --~--~i~Glh~H~~~~~-~~~~~~~~~~~i~~~---~~~~~~~l~~id~GGG~~i~~~----~~d~~~~~~~i~~~~~~ 220 (346)
T cd06829 153 --D--GIEGLHFHTLCEQ-DFDALERTLEAVEER---FGEYLPQLKWLNLGGGHHITRP----DYDVDRLIALIKRFKEK 220 (346)
T ss_pred --H--CCCEEEEEECCCC-CHHHHHHHHHHHHHH---HHHHHHHCCEEECCCCCCCCCC----CCCHHHHHHHHHHHHHH
T ss_conf --3--5861477633675-699999999999999---9975210144551377666788----87999999999999976
Q ss_pred CCCEEEEEECCEECCCCCEEEEEEEEECCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCCEEEEEEEEEECC
Q ss_conf 45303441011120366325888764034689742200553000110011102465322223467776158999810005
Q gi|254780371|r 267 LQCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMNDFMRPTLYDAYHEINYIVNPAGDRLHIHADIVGPICE 346 (431)
Q Consensus 267 ~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~vD~g~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~i~G~~C~ 346 (431)
.+++|++||||||||+||+++++|+++|++ +++|+++|+|+|+++++.++..|++.. ............++|+||+|+
T Consensus 221 ~~~~liiEPGR~lVa~aG~llt~V~~ik~~-g~~~~i~D~g~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~v~Gp~Ce 298 (346)
T cd06829 221 YGVEVYLEPGEAVALNTGYLVATVLDIVEN-GMPIAILDASATAHMPDVLEMPYRPPI-RGAGEPGEGAHTYRLGGNSCL 298 (346)
T ss_pred CCCCEEECCCHHHHHCCEEEEEEEEEEEEC-CEEEEEEECCCCCCCCHHHCCCCCHHH-HCCCCCCCCCCEEEEECCCCC
T ss_conf 397368536340043535799999999509-778999836210376155514654233-047888788846999878988
Q ss_pred CCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEE
Q ss_conf 666656210056688888999967970233340277889866599998
Q gi|254780371|r 347 TGDFIALNRKIALPRPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMVN 394 (431)
Q Consensus 347 ~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~s~~s~fn~~p~p~~v~v~ 394 (431)
++|+|++...+|++++||+|+|.++|||+++|+||||++|||++|+++
T Consensus 299 s~Dvl~~~~~~~~l~~GD~l~i~~~GAY~~smas~yN~~p~Pavv~~d 346 (346)
T cd06829 299 AGDVIGDYSFDEPLQVGDRLVFEDMAHYTMVKTNTFNGVRLPSIAIRD 346 (346)
T ss_pred CCCEECCCCCCCCCCCCCEEEECCCCHHHHHHHCCCCCCCCCCEEEEC
T ss_conf 867888666888999999999915758766763127899998579839
No 18
>KOG0622 consensus
Probab=100.00 E-value=0 Score=524.09 Aligned_cols=370 Identities=26% Similarity=0.408 Sum_probs=327.8
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCEEECCCC
Q ss_conf 99789977999999999999861447978999641079999999999739928986899986522125784312444775
Q gi|254780371|r 26 QTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGVG 105 (431)
Q Consensus 26 gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~S~~El~~al~~G~~~~~Ii~~g~~ 105 (431)
..||||+|+..|.+++++|++++|++ +.+||||||++|.|+++|++.|+||+|+|..|+++++..|++|+||||++|+
T Consensus 55 ~~aFfv~Dl~~I~Rkl~~w~~~LprV--~PfYAVKCN~dp~vl~~La~lG~gfdcaSk~E~~lvl~~gv~P~riIyanpc 132 (448)
T KOG0622 55 KQAFFVADLGAIERKLEAWKKALPRV--RPFYAVKCNSDPKVLRLLASLGCGFDCASKNELDLVLSLGVSPERIIYANPC 132 (448)
T ss_pred CCCEEEECHHHHHHHHHHHHHHCCCC--CCCEEEEECCCHHHHHHHHHCCCCCEECCHHHHHHHHHCCCCHHHEEECCCC
T ss_conf 57337841899999999999865467--8761687379779999999708660103717999998669885666862787
Q ss_pred CCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 42012444420687233332202467687741133442158998723778674433322334445688711113457776
Q gi|254780371|r 106 KTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYA 185 (431)
Q Consensus 106 k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~ 185 (431)
|+.+.|+.|.++||...++||..||.++... .+.++++|||+++-+ .+||.++.|||++.+++..+++.+
T Consensus 133 K~~s~IkyAa~~gV~~~tfDne~el~kv~~~----hP~a~llLrIatdds------~a~~~l~~KFG~~~~~~~~lLd~a 202 (448)
T KOG0622 133 KQVSQIKYAAKHGVSVMTFDNEEELEKVAKS----HPNANLLLRIATDDS------TATCRLNLKFGCSLDNCRHLLDMA 202 (448)
T ss_pred CCHHHHHHHHHCCCEEEEECCHHHHHHHHHH----CCCCEEEEEECCCCC------CCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 5199999999759707862589999999974----997338999736887------455556675687778999999999
Q ss_pred HHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 41563220023355641564420489999999988765310266652688068730002665455311456555654210
Q gi|254780371|r 186 STLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQYFG 265 (431)
Q Consensus 186 ~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~~~~ 265 (431)
+.+ +++++|+|||+||++.+++.|.+++..++.+++...+.|+.+.+||+||||+..+... ..+++.+..|+..+.
T Consensus 203 k~l-~lnvvGvsfHvGSgc~d~~~y~~Ai~dAr~vfd~g~e~Gf~m~~LdiGGGf~g~~~~~---~~fe~i~~~In~ald 278 (448)
T KOG0622 203 KEL-ELNVVGVSFHVGSGCTDLQAYRDAISDARNVFDMGAELGFEMDILDIGGGFPGDEGHA---VVFEEIADVINTALD 278 (448)
T ss_pred HHC-CCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHH---HHHHHHHHHHHHHHH
T ss_conf 871-8658889987258878789999999999999999986186278861378888752301---202638988889999
Q ss_pred C----CCCEEEEEECCEECCCCCEEEEEEEEECCCCCCC-------------CEEECCCCCCCCCCHHHCCCCCCCCCCC
Q ss_conf 2----4530344101112036632588876403468974-------------2200553000110011102465322223
Q gi|254780371|r 266 N----LQCKIILEPGRFLVADVGILVTKVISIKKSADKT-------------FVILDVAMNDFMRPTLYDAYHEINYIVN 328 (431)
Q Consensus 266 ~----~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~-------------~~~vD~g~~~~~~p~~~~~~~~i~~~~~ 328 (431)
. -+..+|.|||||+|+++.+|++.|++.|....+. |++.||.+..+ .+.+|+.+|++.....
T Consensus 279 ~~Fp~~~v~iiaEpGRf~VasafTLa~nViakk~v~~~~~~~d~~d~~~~~mYy~nDGVYGsf-nciL~D~~~~i~~~~~ 357 (448)
T KOG0622 279 LYFPSGGVDIIAEPGRFFVASAFTLAVNVIAKKEVDAKKITSDDEDDEVTFMYYVNDGVYGSF-NCILFDHQHPIPLVVK 357 (448)
T ss_pred HHCCCCCCEEEECCCHHEEECHHEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCEEEEE-CHHHHCCCCCCCCCCC
T ss_conf 747877823884375210302002345555422213001476633467317999736333661-2202134476654567
Q ss_pred CCCC-CCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEE-CCEEEEEEECCC
Q ss_conf 4677-76158999810005666656210056688888999967970233340277889866599998-896899982489
Q gi|254780371|r 329 PAGD-RLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMVN-GSQFHIIRPRMT 406 (431)
Q Consensus 329 ~~~~-~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~s~~s~fn~~p~p~~v~v~-~g~~~~ir~ret 406 (431)
+..+ .+....+|+||+|++.|+++++..||.+.+||||+|.|+||||++++|.||++++|+++++. ++.++.||+.++
T Consensus 358 ~~~e~e~~~~ssIwGPtcD~lD~i~~~~~lp~l~vGdwLvf~~mGAYT~~~aS~fNgf~~p~~~y~~s~~~~e~~r~~~~ 437 (448)
T KOG0622 358 DPSEEEPLYKSSIWGPTCDGLDVIAEDCLLPQLNVGDWLVFENMGAYTMSAASTFNGFQRPKIYYVMSDGDWEKIRDAET 437 (448)
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEECCCCCEECCCCCCCCCCCCCCEEEEECCCCHHHHHCCCC
T ss_conf 97223661453013677641778876414897874675778567760023554357888884589850242887626557
Q ss_pred HHHHHH
Q ss_conf 889973
Q gi|254780371|r 407 FQELIE 412 (431)
Q Consensus 407 ~ed~~~ 412 (431)
+++-.+
T Consensus 438 ~~~~~~ 443 (448)
T KOG0622 438 FDDELR 443 (448)
T ss_pred CCHHHH
T ss_conf 981563
No 19
>pfam02784 Orn_Arg_deC_N Pyridoxal-dependent decarboxylase, pyridoxal binding domain. These pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates This domain has a TIM barrel fold.
Probab=100.00 E-value=0 Score=407.79 Aligned_cols=240 Identities=37% Similarity=0.591 Sum_probs=218.6
Q ss_pred EHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCEEECCCCCCCHHHH
Q ss_conf 79999999999998614479789996410799999999997399289868999865221257843124447754201244
Q gi|254780371|r 33 STTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGVGKTIDEID 112 (431)
Q Consensus 33 d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~S~~El~~al~~G~~~~~Ii~~g~~k~~~~l~ 112 (431)
|++.|+++++.+++++. ++++++||+||||++.||+.+.+.|+|+||+|.+|+++|+++|+++++|+|+||+|++++|+
T Consensus 1 D~~~i~~~~~~~~~~~~-p~~~~~YAvKaN~~~~il~~l~~~G~g~dv~S~~El~~al~~g~~~~~I~~~g~~k~~~~i~ 79 (245)
T pfam02784 1 DLGRIIERAHALWQAFL-PRIQPFYAVKANSDPAVLRLLAELGLGFDCASKGELERVLAAGVPPERIIFANPCKSRSELR 79 (245)
T ss_pred CHHHHHHHHHHHHHHHC-CCCEEEEEEEECCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHEEEECCCCCHHHHH
T ss_conf 96899999999999848-99779988501888999999998299299989999999998698957889814435468999
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 44206872333322024676877411334421589987237786744333223344456887111134577764156322
Q gi|254780371|r 113 LALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYASTLPGVK 192 (431)
Q Consensus 113 ~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~~~~~~l~ 192 (431)
.|+++|+.+|++||++||+++.+++++ .+|+|||||+++.+++..++||. +||||++.+++.++++.+++. +++
T Consensus 80 ~a~~~gv~~i~vDs~~el~~i~~~~~~----~~i~lRvnp~~~~~~~~~~~~g~-~sKFGi~~~~~~~~~~~~~~~-~~~ 153 (245)
T pfam02784 80 YALEHGVVCVTVDNVEELEKLARLAPE----ARLLLRVKPDVDAHAHCYLSTGQ-DSKFGADLEEAEALLKAAKEL-GLN 153 (245)
T ss_pred HHHHHCCCCEEECCHHHHHHHHHHCCC----CCEEEEEEECCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHC-CCC
T ss_conf 999827761442799999999985753----77899994067766554444688-777689999999999999867-997
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCC-----C
Q ss_conf 00233556415644204899999999887653102666526880687300026654553114565556542102-----4
Q gi|254780371|r 193 ISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQYFGN-----L 267 (431)
Q Consensus 193 l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~~~~~-----~ 267 (431)
+.|||||+|||+.+++.|.++++.+.++++.+++.|+++++||+|||||++|..++ ++++|++.+++.+++ .
T Consensus 154 ~~GlH~H~GSq~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~idiGGGf~v~Y~~~~---~~~~~~~~i~~~~~~~~~~~~ 230 (245)
T pfam02784 154 VVGVHFHVGSGCTDAEAFVKAARDARNVFDQGAELGFELKILDLGGGFGVDYTGAE---DFEEYAEVINAALEEVFPHDP 230 (245)
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC---CHHHHHHHHHHHHHHHHCCCC
T ss_conf 54755653657899899999999999999999980998319985899588889999---989999999999999845599
Q ss_pred CCEEEEEECCEECCC
Q ss_conf 530344101112036
Q gi|254780371|r 268 QCKIILEPGRFLVAD 282 (431)
Q Consensus 268 ~~~l~~EPGR~lva~ 282 (431)
.++|++||||||||+
T Consensus 231 ~~~l~~EPGR~lvap 245 (245)
T pfam02784 231 HPTIIAEPGRYIVAP 245 (245)
T ss_pred CEEEEEECCCCCCCC
T ss_conf 808999578000286
No 20
>TIGR01047 nspC carboxynorspermidine decarboxylase; InterPro: IPR005730 Carboxynorspermidine synthase, mediates the nicotinamide-nucleotide-linked reduction of the Schiff base H2N(CH2)3N = CHCH2CH(NH2)COOH. This is formed from L-aspartic beta-semialdehyde (ASA) and 1,3-diaminopropane (DAP) and is reduced to carboxynorspermidine [H2N(CH2)3NH(CH2)2CH(NH2)COOH], an intermediate in the novel pathway for norspermidine biosynthesis shown in Vibrio alginolyticus.; GO: 0016830 carbon-carbon lyase activity, 0045312 nor-spermidine biosynthetic process.
Probab=100.00 E-value=0 Score=340.77 Aligned_cols=371 Identities=18% Similarity=0.247 Sum_probs=305.4
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCC-----CCCE
Q ss_conf 997899779999999999998614479789996410799999999997399-2898689998652212578-----4312
Q gi|254780371|r 26 QTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGS-GLDIVSEGELRRALAAPVP-----AERI 99 (431)
Q Consensus 26 gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~-g~dv~S~~El~~al~~G~~-----~~~I 99 (431)
.||+||+|++.|++|++-+...=...+.+|.-|.|+...-....++.+.|. |+.|+|++|.++|..- |. +|-.
T Consensus 2 ~tP~fvLeE~~L~~Nl~i~~~v~q~SG~kv~LALKGFa~w~~F~ilr~yGL~G~taSgL~EAkLA~E~-fgGreshkE~H 80 (403)
T TIGR01047 2 PTPAFVLEEEKLRKNLEILESVQQQSGAKVLLALKGFAFWGVFPILREYGLKGATASGLWEAKLAKEE-FGGRESHKEVH 80 (403)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH-CCCCCCCCCEE
T ss_conf 99840215789999999999864308727853110032321001024204773242676788632231-38602676668
Q ss_pred EECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCC--C------CCCEEEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 4447754201244442068723333220246768774113--3------4421589987237786744333223344456
Q gi|254780371|r 100 VFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVS--L------GKKAPIAFRVNPDINANTHKKISTGKKEDKF 171 (431)
Q Consensus 100 i~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~--~------~~~~~I~lRinp~~~~~~~~~~~tg~~~sKF 171 (431)
+|+ |.-+++|+...+..-- +|+..|+.|+.+..+.... . ++.+++||||||+++.-..+-.++++.-||.
T Consensus 81 vYs-Pay~e~d~~~I~~La~-~i~FNS~~Q~~~yr~~~~~K~~qlenlG~~~~k~GLRINPeyS~v~~dLYNPc~~~SRL 158 (403)
T TIGR01047 81 VYS-PAYKEEDLPEIIPLAD-HIIFNSLAQWARYREKVEDKNSQLENLGLREVKLGLRINPEYSEVETDLYNPCGKFSRL 158 (403)
T ss_pred EEC-CCCCHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHCCCCCCCCCC
T ss_conf 715-8888645888987741-33410378999999999999998885597502241234674465661320878687546
Q ss_pred CCCCCCCHH-HHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 887111134-5777641563220023355641564420489999999988765310266652688068730002665455
Q gi|254780371|r 172 GIPIHQIHS-LYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRP 250 (431)
Q Consensus 172 Gi~~~~~~~-~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~ 250 (431)
||...++.+ +.+. .+++ +.|||||.-+-..|.+++.+.++ .+-+++.+.-.+++|||+|||. +.+...
T Consensus 159 Gv~a~~f~~Gvke~--~l~g--I~Gl~FH~~CEn~d~dAL~~~L~---~~E~~FG~yL~~m~WVNfGGGH----~~T~~G 227 (403)
T TIGR01047 159 GVQAKEFEEGVKES--LLDG--IEGLHFHTLCENKDADALERTLE---VIEKKFGEYLPQMEWVNFGGGH----LITKKG 227 (403)
T ss_pred CCCHHHHCCCCCCC--CCCC--CCCHHHCCCCCCCCHHHHHHHHH---HHHHHHHHHCCCCCEEECCCCE----EECCCC
T ss_conf 64157761652214--6775--44110001344567478999999---9987642100032303138876----645788
Q ss_pred CCHHHHHHHHHHHHCCCC-CEEEEEECCEECCCCCEEEEEEEEECCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCCCCC
Q ss_conf 311456555654210245-3034410111203663258887640346897422005530001100111024653222234
Q gi|254780371|r 251 PSSSDYASLIHQYFGNLQ-CKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMNDFMRPTLYDAYHEINYIVNP 329 (431)
Q Consensus 251 ~~~~~~~~~i~~~~~~~~-~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~vD~g~~~~~~p~~~~~~~~i~~~~~~ 329 (431)
.|++.+.+.|++--.+.. ++|++|||.|+.-.+|.||++|+|+=++++++.++||+++.=+|.+++...|.|- ++...
T Consensus 228 YDv~~LIa~~K~F~erh~~v~viLEPGeAigWqTG~Lv~sV~DiveNP~~~~AiLD~S~~AHmPD~LemPYrp~-vl~A~ 306 (403)
T TIGR01047 228 YDVEKLIAVIKAFKERHGNVQVILEPGEAIGWQTGFLVASVVDIVENPEKKIAILDVSFEAHMPDTLEMPYRPS-VLGAS 306 (403)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCCEEEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCC-CCCCC
T ss_conf 88899999986665117853899715821221117757999988648996686342120057864101688740-02256
Q ss_pred ------------CCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEE-CC
Q ss_conf ------------67776158999810005666656210056688888999967970233340277889866599998-89
Q gi|254780371|r 330 ------------AGDRLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMVN-GS 396 (431)
Q Consensus 330 ------------~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~s~~s~fn~~p~p~~v~v~-~g 396 (431)
......+.|.|.|+||.+||+++...+-.+|++||.|+|.|+=.||++..+.||+.+.|...+++ +|
T Consensus 307 ~~~~~e~~e~~k~~~~g~~~Y~lGG~tCLAGD~~G~y~Fd~pLkvGdk~vf~D~~HYTmVK~t~FNGv~~P~~~~L~~~G 386 (403)
T TIGR01047 307 VPADEELEEVEKDEKEGEFSYVLGGSTCLAGDVMGEYAFDEPLKVGDKLVFLDMIHYTMVKTTTFNGVKLPSIGCLRAKG 386 (403)
T ss_pred CCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCHHHHHCCCC
T ss_conf 67711357762246778514780578410015110025688776346478842787545122627884473344310378
Q ss_pred EEEEEEECCCHHHHHH
Q ss_conf 6899982489889973
Q gi|254780371|r 397 QFHIIRPRMTFQELIE 412 (431)
Q Consensus 397 ~~~~ir~ret~ed~~~ 412 (431)
+.+.||. ..|||+=+
T Consensus 387 ~~~~~~~-FgYEDyk~ 401 (403)
T TIGR01047 387 EFQLIKT-FGYEDYKN 401 (403)
T ss_pred CEEEHHH-CCCHHHHC
T ss_conf 7676200-77556402
No 21
>PRK05354 arginine decarboxylase; Provisional
Probab=100.00 E-value=1.5e-44 Score=322.80 Aligned_cols=420 Identities=22% Similarity=0.288 Sum_probs=323.7
Q ss_pred CCEEEC-CEEEEC-------CCCHHHHHHH-----CCCCEEEEEHHHHHHHHHHHHHHCCC--------CCCEEEEEEEC
Q ss_conf 716668-858987-------8429999997-----49978997799999999999986144--------79789996410
Q gi|254780371|r 3 AFKYFE-GSLHAE-------NVSLEKLAHV-----VQTPFYCYSTTAIEKNYLTFSNAFDG--------MDTMVCYALKA 61 (431)
Q Consensus 3 ~~~~~~-~~l~i~-------~~~l~~La~~-----~gTP~yV~d~~~i~~n~~~l~~a~~~--------~~~~i~yAvKa 61 (431)
+|...+ |++.+. .+||.+++++ +.+|+.+-..+.|+++++++.++|.. -..+-.|++|.
T Consensus 27 yF~In~~G~v~V~P~~~~~~~idL~~lv~~l~~~G~~~P~llRF~dIL~~ri~~l~~aF~~Ai~e~~Y~g~y~gVyPIKV 106 (634)
T PRK05354 27 YFSINDAGHVSVSPDGDRPGAIDLAELVKELRARGLRLPLLLRFPDILQDRVRSLNAAFKKAIEEYGYQGDYQGVYPIKV 106 (634)
T ss_pred CEEECCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCEEE
T ss_conf 53077983589931898888747999999999769999779964699999999999999999998298886630422343
Q ss_pred CCCHHHHHHHHHCC----CCEEEECHHHHHHHHHCCCCCCC-EEECCCCCCCHHHHHHH---HCCCC-CCCCCCCHHHHH
Q ss_conf 79999999999739----92898689998652212578431-24447754201244442---06872-333322024676
Q gi|254780371|r 62 NSNQAVIKTLAHLG----SGLDIVSEGELRRALAAPVPAER-IVFSGVGKTIDEIDLAL---QSGIY-CFNVESESELKT 132 (431)
Q Consensus 62 N~~~~il~~l~~~G----~g~dv~S~~El~~al~~G~~~~~-Ii~~g~~k~~~~l~~ai---~~gv~-~i~vDs~~el~~ 132 (431)
|....|++.+.+.| .|+||.|..||.+|+..--+++. |++|| .|.++.|+.|+ +.|.. +|+|+.++||+.
T Consensus 107 NQ~r~VVeeI~~~G~~~~~GLEAGSKpEL~a~la~~~~~~aliiCNG-yKD~eyI~LAl~a~klG~~v~iViEk~~EL~~ 185 (634)
T PRK05354 107 NQQRHVVEEIVASGKPYNLGLEAGSKPELMAVLALANDPGSLIVCNG-YKDREYIRLALIGRKLGHKVFIVIEKLSELEL 185 (634)
T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECC-CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHH
T ss_conf 65289999999727656555535868999999862379995599568-27699999999999769966999746899999
Q ss_pred HHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC-HHHHHHHHHHCCCCCHHHH
Q ss_conf 877411334421589987237786744333223344456887111134577764156322-0023355641564420489
Q gi|254780371|r 133 LNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYASTLPGVK-ISGVDMHIGSQIDQIESFH 211 (431)
Q Consensus 133 l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~~~~~~l~-l~GlH~H~GS~~~~~~~~~ 211 (431)
+.+.+++++.++.||+|+.+......+ .-.+||..||||++..|+.++++.+++..-++ +.-||||+|||+.+.....
T Consensus 186 il~~a~~l~v~P~iGvR~kL~s~gsGk-W~~SgGd~sKFGLs~~eil~~v~~Lk~~~~ld~L~LLHfHiGSQI~~I~~ik 264 (634)
T PRK05354 186 ILEEAKELGVKPRLGVRARLASQGSGK-WQSSGGEKSKFGLSATEILEAVERLREAGLLDCLQLLHFHLGSQIANIRDIK 264 (634)
T ss_pred HHHHHHHCCCCCCEEEEEEECCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHEECCCCCCCCHHHHH
T ss_conf 999999749998505799862565761-0677874121588899999999998865845324331132455553499999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCC------CCCHHHHHHHHHHHH-------CCCCCEEEEEECCE
Q ss_conf 99999998876531026665268806873000266545------531145655565421-------02453034410111
Q gi|254780371|r 212 KAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHR------PPSSSDYASLIHQYF-------GNLQCKIILEPGRF 278 (431)
Q Consensus 212 ~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~------~~~~~~~~~~i~~~~-------~~~~~~l~~EPGR~ 278 (431)
.+++++..++.+++..|.++++||+|||+||+|..... ..++++|+..+-..+ +-..|.|+.|.|||
T Consensus 265 ~av~Ea~r~Y~eL~~~Ga~i~ylDvGGGLgVDYdGs~s~~~~S~NYsl~EYa~dVV~~v~~~c~~~~vphP~IvtESGRA 344 (634)
T PRK05354 265 TAVREAARIYVELRKLGAPIKYLDVGGGLGVDYDGTRSQSDSSVNYSLQEYANDVVYTLKEICEEKGVPHPTIISESGRA 344 (634)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHH
T ss_conf 99999999999999758985178515862667677665886676769999899999999999997599999178535610
Q ss_pred ECCCCCEEEEEEEEECCCCCCCC--E----------------EEC-----------------------------------
Q ss_conf 20366325888764034689742--2----------------005-----------------------------------
Q gi|254780371|r 279 LVADVGILVTKVISIKKSADKTF--V----------------ILD----------------------------------- 305 (431)
Q Consensus 279 lva~ag~ll~~V~~vK~~~~~~~--~----------------~vD----------------------------------- 305 (431)
+||.+.+|++.|+++.......- . .++
T Consensus 345 i~AhhsvLv~~Vl~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~E~y~Da~~~~~e~~~~F~~G~lsL~~RA~a 424 (634)
T PRK05354 345 ITAHHAVLVFNVLGVERVEYEEPPAPAEDAPPLLQNLWETLQEIDRRNLQEIYHDAQQDLEEALSLFALGYLSLQERAWA 424 (634)
T ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 10244589986113456887788989877679999999999853778899999999999999999984788579999999
Q ss_pred ---------------------------------------CCC-CCCCCCHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEC
Q ss_conf ---------------------------------------530-0011001110246532222346777615899981000
Q gi|254780371|r 306 ---------------------------------------VAM-NDFMRPTLYDAYHEINYIVNPAGDRLHIHADIVGPIC 345 (431)
Q Consensus 306 ---------------------------------------~g~-~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~i~G~~C 345 (431)
=++ ..++.-+..++.+|+.++. +-.++++....++-=||
T Consensus 425 E~l~~~i~~~i~~~~~~~~~~~~el~~L~~~Lad~Y~~NFSvFQSlPD~WaIdQlFPImPih-RL~E~Ptr~a~l~DiTC 503 (634)
T PRK05354 425 EQLYWAICREIQKLLDPKNAHRPELDELQERLADKYYVNFSLFQSLPDAWAIDQLFPVMPLH-RLDEEPTRRAVLADITC 503 (634)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHEEEEEHHHHCCCCHHHHCCCCCCCCCC-CCCCCCCCCEEEEEECC
T ss_conf 99999999999997523678968999999987655587325751473077752666422330-25888775448862054
Q ss_pred CCCCEEEE---------EEECCCCCCCC--EEEEECCCCHHHHHHCCCCCCCCCEEEEEE---CCEE--EEEEECCCHHH
Q ss_conf 56666562---------10056688888--999967970233340277889866599998---8968--99982489889
Q gi|254780371|r 346 ETGDFIAL---------NRKIALPRPGD--LLYIEKTGAYGAVQSGTYNSRLLIPEIMVN---GSQF--HIIRPRMTFQE 409 (431)
Q Consensus 346 ~~~D~l~~---------~~~lp~l~~GD--~l~i~~~GAY~~s~~s~fn~~p~p~~v~v~---~g~~--~~ir~ret~ed 409 (431)
+|.-.+-+ ..+|+.++.|+ +|.|+-+|||.-.++..+|.+..+.+|-|. +|.. .-+.+.+|.+|
T Consensus 504 DSDGkI~~fi~~~~v~~tLpLH~~~~~e~YylG~FLvGAYQEiLGdlHNLFGdt~~v~V~~~~~g~~~i~~~i~Gdtv~d 583 (634)
T PRK05354 504 DSDGKIDQFIDGQGIKTTLPLHPLDPGEPYYLGFFLVGAYQEILGDMHNLFGDTNAVHVRVDEDGGYEIEHVIEGDTVAD 583 (634)
T ss_pred CCCCCHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEECCCCHHH
T ss_conf 78886533007888746756999999997679876300768876001430799877999986999889987506885999
Q ss_pred HHH-CCCCCHHHHHCCC
Q ss_conf 973-0888568862343
Q gi|254780371|r 410 LIE-LDSIPAWLQKTPK 425 (431)
Q Consensus 410 ~~~-~~~~p~~~~~~~~ 425 (431)
+++ .+.-|..|.+.=+
T Consensus 584 VL~yv~yd~~~l~~~~r 600 (634)
T PRK05354 584 VLEYVQYDPEELLERLR 600 (634)
T ss_pred HHHHCCCCHHHHHHHHH
T ss_conf 99873879999999999
No 22
>COG1166 SpeA Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism]
Probab=100.00 E-value=6.4e-42 Score=304.97 Aligned_cols=422 Identities=24% Similarity=0.305 Sum_probs=321.1
Q ss_pred CCCEEEC-CEEEE-------CCCCHHHHHHH-----CCCCEEEEEHHHHHHHHHHHHHHCCC--------CCCEEEEEEE
Q ss_conf 8716668-85898-------78429999997-----49978997799999999999986144--------7978999641
Q gi|254780371|r 2 SAFKYFE-GSLHA-------ENVSLEKLAHV-----VQTPFYCYSTTAIEKNYLTFSNAFDG--------MDTMVCYALK 60 (431)
Q Consensus 2 ~~~~~~~-~~l~i-------~~~~l~~La~~-----~gTP~yV~d~~~i~~n~~~l~~a~~~--------~~~~i~yAvK 60 (431)
.+|..+| |++.+ ..+||.+|+++ ++-|+.+-+.+.+.++++.+..||.. -..+.-|++|
T Consensus 42 ~yF~In~~G~v~V~P~~~~~~~~dL~elV~~l~~~g~~LPlL~rFp~IL~~Rl~~ln~aF~~Ai~ey~Y~g~Y~~VyPIK 121 (652)
T COG1166 42 GYFDINDAGHVTVCPDPDPGARVDLAELVKALRDRGLRLPLLLRFPQILQHRLRSLNAAFARAIEEYGYPGGYFAVYPIK 121 (652)
T ss_pred CCEEECCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEE
T ss_conf 60224478627980699976522099999999965789856985269999999999999999999808898605898766
Q ss_pred CCCCHHHHHHHHHCC----CCEEEECHHHHHHHHHCC-CCCCCEEECCCCCCCHHHHHHH---HCCCC-CCCCCCCHHHH
Q ss_conf 079999999999739----928986899986522125-7843124447754201244442---06872-33332202467
Q gi|254780371|r 61 ANSNQAVIKTLAHLG----SGLDIVSEGELRRALAAP-VPAERIVFSGVGKTIDEIDLAL---QSGIY-CFNVESESELK 131 (431)
Q Consensus 61 aN~~~~il~~l~~~G----~g~dv~S~~El~~al~~G-~~~~~Ii~~g~~k~~~~l~~ai---~~gv~-~i~vDs~~el~ 131 (431)
+|..+.|++.+...| +|.|+.|..||..|+..- -+..-|++|| .|.++.|+.|+ +.|.. .|+|+-++||+
T Consensus 122 vNQ~r~vVe~Lv~~g~~~~~GLEAGSK~ELm~vLA~~~~~~~~IvCNG-yKDrEyI~lAlig~kLGh~v~ivIEklsEl~ 200 (652)
T COG1166 122 VNQHRRVVESLVASGKGYPLGLEAGSKAELMAVLAHAGNPGSLIVCNG-YKDREYIRLALIGEKLGHKVYIVIEKLSELD 200 (652)
T ss_pred ECCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECC-CCCHHHHHHHHHHHHHCCCEEEEEECHHHHH
T ss_conf 554188999998636898776667887999999983389997178457-4609999999999982795499992267999
Q ss_pred HHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC-HHHHHHHHHHCCCCCHHH
Q ss_conf 6877411334421589987237786744333223344456887111134577764156322-002335564156442048
Q gi|254780371|r 132 TLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYASTLPGVK-ISGVDMHIGSQIDQIESF 210 (431)
Q Consensus 132 ~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~~~~~~l~-l~GlH~H~GS~~~~~~~~ 210 (431)
.+.+.|++++.++++|+|+.... .|+...-++||..||||++..|+.++++.+++..-++ +.-+|||+|||+.+....
T Consensus 201 ~Vl~eA~~lgvkP~lGvR~RL~s-qGsGkW~~SgG~ksKFGLsa~qvL~~v~~Lre~~~Ld~l~llHFHlGSQisnI~~i 279 (652)
T COG1166 201 LVLEEAKQLGVKPRLGVRARLAS-QGSGKWQSSGGEKSKFGLSATQVLQVVERLREANLLDSLQLLHFHLGSQISNIRDI 279 (652)
T ss_pred HHHHHHHHCCCCCCCEEEEEEEC-CCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 99999997399976336888623-55675000468310148888999999999876265776678764100013456999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCC------CCCHHHHHHHHH-------HHHCCCCCEEEEEECC
Q ss_conf 999999998876531026665268806873000266545------531145655565-------4210245303441011
Q gi|254780371|r 211 HKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHR------PPSSSDYASLIH-------QYFGNLQCKIILEPGR 277 (431)
Q Consensus 211 ~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~------~~~~~~~~~~i~-------~~~~~~~~~l~~EPGR 277 (431)
..+++++..++.++++.|.+++++|+|||+++.|..... ..++.+|+..|- +..+.+.|.|+.|.||
T Consensus 280 k~~~rEA~r~YvEL~klGa~i~~~dVGGGLgVDYdGt~t~~~~S~NY~l~eYA~dVV~~l~d~C~~~~~p~P~IisESGR 359 (652)
T COG1166 280 KTGVREAARFYVELRKLGANIKYFDVGGGLGVDYDGTRTQSDCSKNYGLNEYANDVVWALKDACEEKGLPHPTIISESGR 359 (652)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCH
T ss_conf 99999999999999982788607851684433216764466323367889999899999999998459999807810442
Q ss_pred EECCCCCEEEEEEEEECCCCCC-CCEEECC------------------------------------------CCCCC---
Q ss_conf 1203663258887640346897-4220055------------------------------------------30001---
Q gi|254780371|r 278 FLVADVGILVTKVISIKKSADK-TFVILDV------------------------------------------AMNDF--- 311 (431)
Q Consensus 278 ~lva~ag~ll~~V~~vK~~~~~-~~~~vD~------------------------------------------g~~~~--- 311 (431)
+++|...+|++.|+++.+.... .=...+. |.-++
T Consensus 360 aitAHhaVLI~~Vi~v~~~~~~~~p~~~~~~~~~~l~~~~~e~~~~i~~r~~~E~~hds~~~~~~~~~~f~~G~l~L~~R 439 (652)
T COG1166 360 AITAHHAVLIANVIGVERHEYNDAPLPDAPRNLPPLWRTLQELYESITARNLREWYHDSQDDLEDAHSLFNLGYLSLQER 439 (652)
T ss_pred HHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 32204228986300024578777888888432458999999986345778899999876767999998750353228888
Q ss_pred ------------------------CCC--------------------------HHHCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf ------------------------100--------------------------111024653222234677761589998
Q gi|254780371|r 312 ------------------------MRP--------------------------TLYDAYHEINYIVNPAGDRLHIHADIV 341 (431)
Q Consensus 312 ------------------------~~p--------------------------~~~~~~~~i~~~~~~~~~~~~~~~~i~ 341 (431)
.|| +-.++-.||.++.. -.++++....++
T Consensus 440 a~aEqL~~aic~ki~~~~~~~~~~~r~~ldeLqe~ladky~vNfSlFQSlPD~W~IdQlFPI~Pl~r-LdE~PtRravL~ 518 (652)
T COG1166 440 AWAEQLYLAICHKVQQLLRQKNRSHRPILDELQERLADKYYVNFSLFQSLPDAWGIDQLFPILPLHR-LDEEPTRRAVLL 518 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEEEHHHHCCCCHHHHCCCCCCCCCCC-CCCCCCCEEEEE
T ss_conf 8799999999999999854530687678999999976674772057505841210023566230223-588755113788
Q ss_pred EEECCCCCEEE---EE------EECCCCCCCC--EEEEECCCCHHHHHHCCCCCCCCCEE--EEEE-CC--EEEEEEECC
Q ss_conf 10005666656---21------0056688888--99996797023334027788986659--9998-89--689998248
Q gi|254780371|r 342 GPICETGDFIA---LN------RKIALPRPGD--LLYIEKTGAYGAVQSGTYNSRLLIPE--IMVN-GS--QFHIIRPRM 405 (431)
Q Consensus 342 G~~C~~~D~l~---~~------~~lp~l~~GD--~l~i~~~GAY~~s~~s~fn~~p~p~~--v~v~-~g--~~~~ir~re 405 (431)
-=||+|.-.+. .. .++++..+|. +|.|+-+|||...|.+-+|.+.-+.+ |.+. +| +...+.+.+
T Consensus 519 DiTCDSDG~Id~yid~~~i~s~Lplh~~~~~epy~lGfFLVGAYQEILG~~HNLFGdt~~v~V~v~~~G~y~ie~~~egd 598 (652)
T COG1166 519 DITCDSDGKIDHYIDGDGIKSTLPLHEYDPGEPYLLGFFLVGAYQEILGNMHNLFGDTTAVHVVVDPKGSYEIEDIVEGD 598 (652)
T ss_pred EEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEECCC
T ss_conf 65307988600231376654544478889998756652127579999766665058984589998799867998652356
Q ss_pred CHHHHHH-CCCCCHHHHHCCCC
Q ss_conf 9889973-08885688623432
Q gi|254780371|r 406 TFQELIE-LDSIPAWLQKTPKQ 426 (431)
Q Consensus 406 t~ed~~~-~~~~p~~~~~~~~~ 426 (431)
|.+|+++ .+.-|+-|.+.=++
T Consensus 599 Ti~dmL~yv~yd~~~l~~~~r~ 620 (652)
T COG1166 599 TVADMLEYVQYDPKELLTLYRQ 620 (652)
T ss_pred CHHHHHHHHCCCHHHHHHHHHH
T ss_conf 0999998735699999999999
No 23
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=100.00 E-value=1.6e-42 Score=309.05 Aligned_cols=211 Identities=31% Similarity=0.518 Sum_probs=194.8
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHH
Q ss_conf 99999999986144797899964107999999999973992898689998652212578431244477542012444420
Q gi|254780371|r 37 IEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGVGKTIDEIDLALQ 116 (431)
Q Consensus 37 i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~S~~El~~al~~G~~~~~Ii~~g~~k~~~~l~~ai~ 116 (431)
|++|+++++++++. +++++|++|||+++.+++++.+.|+||||+|.+|+..++++|+++++|+|+||+|+.++++.|++
T Consensus 1 ir~N~~~lk~~l~~-~~~i~~avKAn~~~~v~~~l~~~g~g~~vas~~E~~~~~~~G~~~~~Il~~g~~~~~~~~~~a~~ 79 (211)
T cd06808 1 IRHNYRRLREAAPA-GITLFAVVKANANPEVARTLAALGTGFDVASLGEALLLRAAGIPPEPILFLGPCKQVSELEDAAE 79 (211)
T ss_pred CHHHHHHHHHHCCC-CCEEEEEEECCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHH
T ss_conf 97999999986899-98899998308829999999973890789609999999975997556101566476689999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHH
Q ss_conf 68723333220246768774113344215899872377867443332233444568871111345777641563220023
Q gi|254780371|r 117 SGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYASTLPGVKISGV 196 (431)
Q Consensus 117 ~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~~~~~~l~l~Gl 196 (431)
+|+..+++||++|+++|.+.+.+.+++.+|.||+|++ ...+|||++.+++.++++.+++++++++.|+
T Consensus 80 ~~~~~~~vds~~~l~~l~~~a~~~~~~~~v~lrintg------------~~~~rfG~~~~e~~~~~~~~~~~~~l~l~Gi 147 (211)
T cd06808 80 QGVIVVTVDSLEELEKLEEAALKAGPPARVLLRIDTG------------DENGKFGVRPEELKALLERAKELPHLRLVGL 147 (211)
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECC------------CCCCCCCCCHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 6122401067788877899888538885147767227------------7767778899999999999996898666114
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 35564156442048999999998876531026665268806873000266545531145655565421024530344101
Q gi|254780371|r 197 DMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQYFGNLQCKIILEPG 276 (431)
Q Consensus 197 H~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~~~~~~~~~l~~EPG 276 (431)
|+|+||++.+.+.|.++++.+.++++++++.|++++++|+|||||++|..+. -.....|+|||
T Consensus 148 ~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~i~iGgg~gv~y~~e~-----------------p~~~~~~vrpG 210 (211)
T cd06808 148 HTHFGSADEDYSPFVEALSRFVAALDQLGELGIDLEQLSIGGSFAILYLQEL-----------------PLGTFIIVEPG 210 (211)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCC-----------------CHHHEEEECCC
T ss_conf 6654344389899999999999999999975969798996998243789889-----------------82670463479
Q ss_pred C
Q ss_conf 1
Q gi|254780371|r 277 R 277 (431)
Q Consensus 277 R 277 (431)
|
T Consensus 211 ~ 211 (211)
T cd06808 211 R 211 (211)
T ss_pred C
T ss_conf 9
No 24
>pfam00278 Orn_DAP_Arg_deC Pyridoxal-dependent decarboxylase, C-terminal sheet domain. These pyridoxal-dependent decarboxylases act on ornithine, lysine, arginine and related substrates.
Probab=99.91 E-value=1.2e-24 Score=187.52 Aligned_cols=108 Identities=32% Similarity=0.477 Sum_probs=97.8
Q ss_pred EEEEEEEEECCCCC-CCCEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEECC-CCCC
Q ss_conf 25888764034689-742200553000110011102465322223467776158999810005666656210056-6888
Q gi|254780371|r 285 ILVTKVISIKKSAD-KTFVILDVAMNDFMRPTLYDAYHEINYIVNPAGDRLHIHADIVGPICETGDFIALNRKIA-LPRP 362 (431)
Q Consensus 285 ~ll~~V~~vK~~~~-~~~~~vD~g~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp-~l~~ 362 (431)
+|+|+|+++|++.+ ++|+.+|+|++++++|++|+++|++..+.. ..+.+..+++|+||+|+++|+|++++.|| ++++
T Consensus 1 ~Lvt~V~~~k~~~~~~~~~~ld~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~Gp~C~s~D~l~~~~~lP~~l~~ 79 (110)
T pfam00278 1 TLVTEVIDVKERGDDRKFVYLDDGVYGSPDPALYDALHPILPVSR-LDDEPLRPYTLAGPTCDSGDVLARDVSLPLELEV 79 (110)
T ss_pred CCEEEEEEEECCCCCCEEEEECCCHHCCCCHHHHCCCCCCEEECC-CCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCC
T ss_conf 957999999538995169998885311411476486344287016-7888735799974156768798223307723378
Q ss_pred CCEEEEECCCCHHHHHHCCCCCCCCCEEEEE
Q ss_conf 8899996797023334027788986659999
Q gi|254780371|r 363 GDLLYIEKTGAYGAVQSGTYNSRLLIPEIMV 393 (431)
Q Consensus 363 GD~l~i~~~GAY~~s~~s~fn~~p~p~~v~v 393 (431)
||+|+|.++|||+++|+|+||++++|++|++
T Consensus 80 GD~l~~~~~GAY~~~~ss~fNg~~~p~~v~v 110 (110)
T pfam00278 80 GDWLVFFDAGAYTISLSSNFNGFPRPAEVLV 110 (110)
T ss_pred CCEEEECCCCCCCCHHCCCCCCCCCCCEEEC
T ss_conf 9999988886233100266679898879979
No 25
>cd06818 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase. This subfamily is composed of Burkholderia cepacia cryptic D-serine dehydratase (cryptic DSD), which is also called D-serine deaminase, and similar bacterial proteins. Members of this subfamily are fold type III PLP-dependent enzymes with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity, it is possible cryptic DSDs may also form dimers. Cryptic DSDs are distinct from the ubiquitous bacterial DSDs coded by the dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PLP-dependent enzymes. At present, the enzymatic and biochemical properties
Probab=99.91 E-value=2.4e-21 Score=165.12 Aligned_cols=329 Identities=15% Similarity=0.177 Sum_probs=211.5
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCCEEECCC
Q ss_conf 997899779999999999998614479789996410799999999997399-2898689998652212578431244477
Q gi|254780371|r 26 QTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGS-GLDIVSEGELRRALAAPVPAERIVFSGV 104 (431)
Q Consensus 26 gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~-g~dv~S~~El~~al~~G~~~~~Ii~~g~ 104 (431)
.||+.|+|.+.+++|++++++.....+.+++..+||++.+.+.+...+.|+ |+.|++..|.+....+|++ +|+++++
T Consensus 2 ~TPaLvvD~~~le~Ni~~M~~~~~~~gv~lRPH~KTHKs~eia~~Q~~~Ga~git~at~~EAe~~~~~G~~--dilia~~ 79 (382)
T cd06818 2 SLPLLVLDASALAHNLAWMQAFAAAHGVKLAPHGKTTMAPQLFRRQLEAGAWGITVATVAQARVALAFGVR--RVLLANQ 79 (382)
T ss_pred CCCEEEECHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCC--CEEEECC
T ss_conf 99779970999999999999999866983520401004799999999689983896779999999976986--4799426
Q ss_pred CCCCHHHHHH---HHC--CCC-CCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCC-CCCC
Q ss_conf 5420124444---206--872-33332202467687741133442158998723778674433322334445688-7111
Q gi|254780371|r 105 GKTIDEIDLA---LQS--GIY-CFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGI-PIHQ 177 (431)
Q Consensus 105 ~k~~~~l~~a---i~~--gv~-~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi-~~~~ 177 (431)
...+..++.. .+. ++. .+.|||.+.++.|.+.+.+.+.+..|+|-||.+ ..|-|+ +.++
T Consensus 80 iv~~~~~~rl~~l~~~~~~~~i~~~vD~~~~~~~l~~~~~~~~~~~~V~ievd~G--------------~~R~Gv~~~~~ 145 (382)
T cd06818 80 LVGKANLRRLAALLAADPDFEFFCLVDSVDNVRALAAFFAALERPLNVLIELGVP--------------GGRTGVRTEAE 145 (382)
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCC--------------CCCCCCCCHHH
T ss_conf 5798899999999850899789999629999999999998559945899997889--------------88789998699
Q ss_pred CHHHHHHHHHCCCCCHHHHHHHHHHCC--CC---CHHHHHHHHHHHHHHHHHHCCCCCC-C--EEEECCCCCCCCCCCCC
Q ss_conf 134577764156322002335564156--44---2048999999998876531026665-2--68806873000266545
Q gi|254780371|r 178 IHSLYAYASTLPGVKISGVDMHIGSQI--DQ---IESFHKAFKLLRDLTQQLRSNGHNI-Q--HIDVGGGLGIAYHSDHR 249 (431)
Q Consensus 178 ~~~~~~~~~~~~~l~l~GlH~H~GS~~--~~---~~~~~~~~~~~~~~~~~l~~~g~~~-~--~ldiGGGf~i~y~~~~~ 249 (431)
+.++++.+.+.++|++.|||+|-|+-. .. .....+..+.+.++.+.+.+.+... . .+. |||-
T Consensus 146 a~~l~~~i~~~~~L~~~Gl~~y~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivs-~GgT--------- 215 (382)
T cd06818 146 ALALADAIAASPALRLAGVEGYEGVAAHDDSEETLAAVRAFLARAVDLARRLAERGLFPDRELILT-AGGS--------- 215 (382)
T ss_pred HHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE-EECC---------
T ss_conf 999999997299965946885467566788668999999999999999999997067888970899-8289---------
Q ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEECCEECCC-------------------------CCEEEEEEEEECCCCCCCCEEE
Q ss_conf 531145655565421024530344101112036-------------------------6325888764034689742200
Q gi|254780371|r 250 PPSSSDYASLIHQYFGNLQCKIILEPGRFLVAD-------------------------VGILVTKVISIKKSADKTFVIL 304 (431)
Q Consensus 250 ~~~~~~~~~~i~~~~~~~~~~l~~EPGR~lva~-------------------------ag~ll~~V~~vK~~~~~~~~~v 304 (431)
+.+...++...........+..+-||-|+.-| |-..+++|+++ +...++++
T Consensus 216 -~~f~~~~~~~~~~~~~~~~~~elrpG~Yvf~D~g~Y~~~~~~~~~~~~~~~~~~f~~Al~VlttViS~---p~~~~ail 291 (382)
T cd06818 216 -AWFDLVAEALAALALDGPVTLVLRSGCYVTHDHGIYRRAQQALRARDPLSLAGALRPALEIWAYVQSR---PEPGLAIL 291 (382)
T ss_pred -CCHHHHHHHHCCCCCCCCCEEEECCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECC---CCCCEEEE
T ss_conf -55433345541445687732798671699745278764324443036655332221215999999642---46996998
Q ss_pred CCCCCCCCCCHHHCCCCCCCCC-CCCC-CC-CCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHCC
Q ss_conf 5530001100111024653222-2346-77-7615899981000566665621005668888899996797023334027
Q gi|254780371|r 305 DVAMNDFMRPTLYDAYHEINYI-VNPA-GD-RLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQSGT 381 (431)
Q Consensus 305 D~g~~~~~~p~~~~~~~~i~~~-~~~~-~~-~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~s~~s~ 381 (431)
|+|.-.+.... -.|.... ..+. +- .....+.+. .+-++.=++... .-..+++||.|.+..-=+ | +.
T Consensus 292 DaG~K~ls~D~----g~P~~~~~~~~g~~~~~~~~~~~v~-~~seEHgil~~~-~~~~l~vGd~v~iiP~H~-C----~T 360 (382)
T cd06818 292 GMGKRDVAFDA----GLPVPLRVFRPGGGVVRLPDGWEVT-ALNDQHAFLRLP-PESPLAVGDVIAFGISHP-C----TT 360 (382)
T ss_pred CCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCEEEE-CCCCCEEEEECC-CCCCCCCCCEEEEECCCC-C----CC
T ss_conf 88651200246----9986532015885323589970780-113632478779-989999977899979964-7----39
Q ss_pred CCCCCCCEEEEEECCE
Q ss_conf 7889866599998896
Q gi|254780371|r 382 YNSRLLIPEIMVNGSQ 397 (431)
Q Consensus 382 fn~~p~p~~v~v~~g~ 397 (431)
+|.++ --++|+++.
T Consensus 361 ~n~~~--~~~vVd~~~ 374 (382)
T cd06818 361 FDKWR--VILLVDDDY 374 (382)
T ss_pred HHHCC--EEEEEECCC
T ss_conf 11088--899997988
No 26
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase. Low specificity D-threonine aldolase (Low specificity D-TA, EC 4.3.1.18), encoded by dtaAS gene from Arthrobacter sp. strain DK-38, is the prototype of this subfamily. Low specificity D-TAs are fold type III PLP-dependent enzymes that catalyze the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Members of this subfamily show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that t
Probab=99.90 E-value=4.4e-20 Score=156.53 Aligned_cols=319 Identities=17% Similarity=0.208 Sum_probs=212.8
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCCEEE
Q ss_conf 974997899779999999999998614479789996410799999999997399-2898689998652212578431244
Q gi|254780371|r 23 HVVQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGS-GLDIVSEGELRRALAAPVPAERIVF 101 (431)
Q Consensus 23 ~~~gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~-g~dv~S~~El~~al~~G~~~~~Ii~ 101 (431)
.+..||+.++|++.+++|++++++.....+.+++..+||++.+.+.+...+.|+ |+-|++..|.+.....|++ +|++
T Consensus 3 ~~l~TP~lvvd~~~l~~Ni~~m~~~~~~~gv~lrPH~KThks~~i~~~ql~~Ga~gi~~atl~EAe~~~~~G~~--dIll 80 (358)
T cd06819 3 AEIDTPALVLDLDALERNIKRMAAFAKAHGVRLRPHAKTHKCPAIARRQIAAGAVGVCCQKLSEAEVMAAAGIR--DILI 80 (358)
T ss_pred CCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEHHHCCHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCC--EEEE
T ss_conf 00699839972999999999999999867996777731207899999999669974996579999999977997--0688
Q ss_pred CCCCCCCHHHHHHH----HCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC-C
Q ss_conf 47754201244442----068723333220246768774113344215899872377867443332233444568871-1
Q gi|254780371|r 102 SGVGKTIDEIDLAL----QSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPI-H 176 (431)
Q Consensus 102 ~g~~k~~~~l~~ai----~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~-~ 176 (431)
..|...+..++... +..+ .+.|||.+.++.+.+.+...+.+.+|+|-|+.+ . .|-|+.+ +
T Consensus 81 a~p~v~~~~l~rl~~l~~~~~~-~~~vDs~~~~~~l~~~a~~~~~~~~V~Ievd~G------------~--~R~Gv~~~~ 145 (358)
T cd06819 81 TNEVVGPAKIARLAALARRAPL-IVCVDHPDNVRALAAAAVEAGVRLDVLVEIDVG------------Q--GRCGVPPGE 145 (358)
T ss_pred ECCCCCHHHHHHHHHHHHCCCE-EEEEECHHHHHHHHHHHHHCCCCEEEEEEECCC------------C--CCCCCCCHH
T ss_conf 5466897899999999854998-999949999999999998659963699997889------------9--877888869
Q ss_pred CCHHHHHHHHHCCCCCHHHHHHHHHH--CCCCCHH----HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 11345777641563220023355641--5644204----89999999988765310266652688068730002665455
Q gi|254780371|r 177 QIHSLYAYASTLPGVKISGVDMHIGS--QIDQIES----FHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRP 250 (431)
Q Consensus 177 ~~~~~~~~~~~~~~l~l~GlH~H~GS--~~~~~~~----~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~ 250 (431)
++.++++.+.+.++|++.|++.|-|. ...+.+. ..+..+.+..+.+.+++.|.+.++++.||- |. |......
T Consensus 146 ~~~~la~~I~~~~~l~l~Gi~~y~Gh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ivs~GgT-~t-~~~~~~~ 223 (358)
T cd06819 146 AALALARTIAALPGLRFAGLQAYHGHLQHIRDYEERRAAIAEAAEALQATRDALEAAGLPCEIVTGGGT-GT-YEFEAAS 223 (358)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCC-CC-EEEECCC
T ss_conf 999999999848998062010465333027998999999999999999999999966999855744788-75-0222256
Q ss_pred CCHHHHHHHHHHHHCCCCCEEEEEECCEECC-----------------CCCEEEEEEEEECCCCCCCCEEECCCCCCCCC
Q ss_conf 3114565556542102453034410111203-----------------66325888764034689742200553000110
Q gi|254780371|r 251 PSSSDYASLIHQYFGNLQCKIILEPGRFLVA-----------------DVGILVTKVISIKKSADKTFVILDVAMNDFMR 313 (431)
Q Consensus 251 ~~~~~~~~~i~~~~~~~~~~l~~EPGR~lva-----------------~ag~ll~~V~~vK~~~~~~~~~vD~g~~~~~~ 313 (431)
+...-+-||-|+.- .|...+++|+.+ +...++++|+|.-.+..
T Consensus 224 -----------------~~~tEl~~G~yvf~D~~y~~~~~~~~~~~~~~Al~V~~~ViS~---p~~~~~~vd~G~k~ls~ 283 (358)
T cd06819 224 -----------------GVYTELQAGSYVFMDADYGDNEDEGGAPPFENALFVLTTVISA---NAPGRAVVDAGLKSLSV 283 (358)
T ss_pred -----------------CCEEEECCCEEEEECHHHHHHCCCCCCCCCCEEEEEEEEEECC---CCCCCEEECCCCCCCCC
T ss_conf -----------------7337977842996167886411345676665007998677725---78882786477630003
Q ss_pred CHHHCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEE
Q ss_conf 01110246532222346777615899981000566665621005668888899996797023334027788986659999
Q gi|254780371|r 314 PTLYDAYHEINYIVNPAGDRLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMV 393 (431)
Q Consensus 314 p~~~~~~~~i~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~s~~s~fn~~p~p~~v~v 393 (431)
.. -.|. +...+ . ..+. .+-++.=++.....-..++.||.|.|.-.=+ |. .+|.++ --++|
T Consensus 284 d~----g~p~-~~~~~-----~--~~v~-~~s~EHg~l~~~~~~~~l~vGd~v~~~P~H~-C~----t~~~~~--~~~vv 343 (358)
T cd06819 284 DS----GLPK-VAGRP-----G--LSYV-RAGDEHGIVELEDGAAPLKIGDRLELVPGHC-DP----TVNLHD--WYVGV 343 (358)
T ss_pred CC----CCCC-CCCCC-----C--CEEE-CCCCCEEEEECCCCCCCCCCCCEEEEEECCC-CH----HHHHCC--EEEEE
T ss_conf 67----8885-65899-----8--5794-0157500787799878999999999980883-26----377389--89999
Q ss_pred ECCEEEE
Q ss_conf 8896899
Q gi|254780371|r 394 NGSQFHI 400 (431)
Q Consensus 394 ~~g~~~~ 400 (431)
++|++.-
T Consensus 344 ~~~~Vvd 350 (358)
T cd06819 344 RGGVVED 350 (358)
T ss_pred ECCEEEE
T ss_conf 9999999
No 27
>cd06820 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Low Specificity D-Threonine Aldolase-like. This subfamily is composed of uncharacterized bacterial proteins with similarity to low specificity D-threonine aldolase (D-TA), which is a fold type III PLP-dependent enzyme that catalyzes the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Low specificity D-TAs show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that the monomeric form of low specificity D-TAs exh
Probab=99.89 E-value=1.2e-19 Score=153.72 Aligned_cols=321 Identities=17% Similarity=0.182 Sum_probs=210.8
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCCEEECC
Q ss_conf 4997899779999999999998614479789996410799999999997399-289868999865221257843124447
Q gi|254780371|r 25 VQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGS-GLDIVSEGELRRALAAPVPAERIVFSG 103 (431)
Q Consensus 25 ~gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~-g~dv~S~~El~~al~~G~~~~~Ii~~g 103 (431)
..||+.++|.+.+++|++++++.....+.++...+||+..+.+.+...+.|. |+.|++..|.+...+.|++ +|++..
T Consensus 1 l~TP~l~vd~~~l~~Ni~~m~~~~~~~gv~lrPH~KThk~~e~~~~ql~~Ga~g~~vatl~EAe~l~~~G~~--dilla~ 78 (353)
T cd06820 1 LDTPALLIDLDRLERNIARMQAYADAHGLSLRPHIKTHKSPEIARLQLAAGAIGITVATVGEAEVMADAGLS--DIFIAY 78 (353)
T ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEHHHCCHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCC--CEEEEC
T ss_conf 999779972999999999999989876994778851314799999998679974999729999999976997--668843
Q ss_pred CCCCCHHHHHHH----HCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCC-CCCCC
Q ss_conf 754201244442----0687233332202467687741133442158998723778674433322334445688-71111
Q gi|254780371|r 104 VGKTIDEIDLAL----QSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGI-PIHQI 178 (431)
Q Consensus 104 ~~k~~~~l~~ai----~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi-~~~~~ 178 (431)
|...++.++... +..+ .+.+||.+.++.|.+.+...+.+.+|.|.|+.+ . .|-|+ +.+++
T Consensus 79 p~v~~~~~~~l~~l~~~~~i-~~~vD~~~~~~~l~~~~~~~~~~~~V~ieid~G------------~--~R~Gv~~~~~~ 143 (353)
T cd06820 79 PIVGRQKLERLRALAERVTL-SVGVDSAEVARGLAEVAEGAGRPLEVLVEVDSG------------M--NRCGVQTPEDA 143 (353)
T ss_pred CCCCHHHHHHHHHHHHCCCE-EEEECCHHHHHHHHHHHHHCCCCEEEEEEECCC------------C--CCCCCCCHHHH
T ss_conf 66898999999974304988-999657999999999997679942899996888------------8--86888986999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCCCC----HHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHH
Q ss_conf 34577764156322002335564156442----04899999999887653102666526880687300026654553114
Q gi|254780371|r 179 HSLYAYASTLPGVKISGVDMHIGSQIDQI----ESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSS 254 (431)
Q Consensus 179 ~~~~~~~~~~~~l~l~GlH~H~GS~~~~~----~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~ 254 (431)
.++++.+.+.++|++.|++.|-|. .... +......+.+..+...++..|....+++.||=-...+ ........
T Consensus 144 ~~l~~~i~~~~~l~l~Gv~~y~Gh-~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~vs~GgT~t~~~--~~~~~~~t 220 (353)
T cd06820 144 VALARAIASAPGLRFRGIFTYPGH-SYAPGALEEAAADEAEALLAAAGILEEAGLEPPVVSGGSTPTLWR--SHEVPGIT 220 (353)
T ss_pred HHHHHHHHHCCCCEEEEEEECCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEE--HHCCCCCC
T ss_conf 999999985899768899954876-678346999999999999999999884699988898569975460--00167651
Q ss_pred HHHHHHHHHHCCCCCEEEEEECCEECC--------------CCCEEEEEEEEECCCCCCCCEEECCCCCCCCCCHHHCCC
Q ss_conf 565556542102453034410111203--------------663258887640346897422005530001100111024
Q gi|254780371|r 255 DYASLIHQYFGNLQCKIILEPGRFLVA--------------DVGILVTKVISIKKSADKTFVILDVAMNDFMRPTLYDAY 320 (431)
Q Consensus 255 ~~~~~i~~~~~~~~~~l~~EPGR~lva--------------~ag~ll~~V~~vK~~~~~~~~~vD~g~~~~~~p~~~~~~ 320 (431)
-+-||.|+.- .|...+++|+.+- ....+++|+|.-.+.... +..
T Consensus 221 -----------------El~~G~yvf~D~~~~~~~~~~~~~~Al~vl~~ViS~p---~~~~~~vd~G~k~ls~d~--~~~ 278 (353)
T cd06820 221 -----------------EIRPGTYIFNDASQVALGACTLDDCALTVLATVVSRP---TAERAVLDAGSKALTSDR--GTG 278 (353)
T ss_pred -----------------EECCCEEEECCHHHHCCCCCCHHHCEEEEEEEEEEEC---CCCCEEEECCCHHHCCCC--CCC
T ss_conf -----------------6614317951567740476883123257888899406---998089905644432567--889
Q ss_pred CCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCEEEE
Q ss_conf 65322223467776158999810005666656210056688888999967970233340277889866599998896899
Q gi|254780371|r 321 HEINYIVNPAGDRLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMVNGSQFHI 400 (431)
Q Consensus 321 ~~i~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~s~~s~fn~~p~p~~v~v~~g~~~~ 400 (431)
.+-..... +. +. ..+.+ +-++.=++...-.-+.+++||.|.+.-.=+ |. .+|.++ --++|++|+..-
T Consensus 279 ~~g~g~~~--~~-~~--~~~~~-~s~EHg~l~~~~~~~~l~vGd~v~~~P~H~-c~----t~~~~~--~~~vv~~~~vvd 345 (353)
T cd06820 279 TTGYGHLL--EY-PD--ARIVG-LSEEHGVIDLSGCDALPRVGDRVRVVPNHA-CV----VVNLVD--EVYLVDGGEVVE 345 (353)
T ss_pred CCCCCCCC--CC-CC--CEEEE-ECCCCEEEECCCCCCCCCCCCEEEEEECCC-CH----HHHHCC--EEEEEECCEEEE
T ss_conf 76775213--89-98--77940-007740887888778999999999993882-17----688479--899999999999
No 28
>cd06821 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme D-Threonine Aldolase. D-threonine aldolase (D-TA, EC 4.3.1.18) reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Its activity is present in several genera of bacteria but not in fungi. It requires PLP and a divalent cation such as Co2+, Ni2+, Mn2+, or Mg2+ as cofactors for catalytic activity and thermal stability. Members of this subfamily show similarity to bacterial alanine racemase (AR), a fold type III PLP-dependent enzyme which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that
Probab=99.88 E-value=3.5e-19 Score=150.42 Aligned_cols=317 Identities=19% Similarity=0.207 Sum_probs=206.0
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCCEEE
Q ss_conf 974997899779999999999998614479789996410799999999997399-2898689998652212578431244
Q gi|254780371|r 23 HVVQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGS-GLDIVSEGELRRALAAPVPAERIVF 101 (431)
Q Consensus 23 ~~~gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~-g~dv~S~~El~~al~~G~~~~~Ii~ 101 (431)
++..||+.++|++.+++|++++++...... +++..+||++.+.+.+...+.|+ |+.|++..|.+...+.|++ +|++
T Consensus 5 ~~l~TPalvvD~~~l~~Ni~~m~~~~~~~~-~lRPH~KThKs~~ia~~Ql~~Ga~gi~vatl~EAe~~a~~G~~--dIli 81 (361)
T cd06821 5 DEIISPALAVYPDRIEENIRRMIRMAGDPQ-RLRPHVKTHKMAEIVRLQLEAGITKFKCATIAEAEMLAEAGAP--DVLL 81 (361)
T ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHHCCCC-CEEEEEECCCCHHHHHHHHHCCCCCEEECCHHHHHHHHHCCCC--CEEE
T ss_conf 658997399719999999999999623168-7778964117999999999779983796279999999975997--5899
Q ss_pred CCCCCCCHHHHHHH----HC-CCC-CCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 47754201244442----06-872-3333220246768774113344215899872377867443332233444568871
Q gi|254780371|r 102 SGVGKTIDEIDLAL----QS-GIY-CFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPI 175 (431)
Q Consensus 102 ~g~~k~~~~l~~ai----~~-gv~-~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~ 175 (431)
+.|...+ .++.++ +. +.. .+.|||.+.++.|.+.+.+.+.+..|.|-|+.+ . .|-|+.+
T Consensus 82 a~piv~~-k~~rl~~l~~~~~~~~i~v~VDs~~~~~~l~~~~~~~~~~~~V~ievD~G------------~--~R~Gv~~ 146 (361)
T cd06821 82 AYPLVGP-NIERFLELAKKYPGTRFSALVDDLEAAEALSAAAGSAGLTLSVLLDVNTG------------M--NRTGIAP 146 (361)
T ss_pred ECCCCCH-HHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHCCCCEEEEEEECCC------------C--CCCCCCC
T ss_conf 7577656-69999998753889779999708999999999998669960699997678------------8--8688888
Q ss_pred C-CCHHHHHHHHHCCCCCHHHHHHHHHH-CCCCC----HHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf 1-11345777641563220023355641-56442----048999999998876531026665268806873000266545
Q gi|254780371|r 176 H-QIHSLYAYASTLPGVKISGVDMHIGS-QIDQI----ESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHR 249 (431)
Q Consensus 176 ~-~~~~~~~~~~~~~~l~l~GlH~H~GS-~~~~~----~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~ 249 (431)
+ ++.++++.+.+.++|++.|+++|-|. +..+. +...+..+.+.++.+.+++.|+....+.+|| -|.
T Consensus 147 ~~~a~~La~~i~~~~~L~l~Gi~~y~Gh~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~vs~Gg-Tpt------- 218 (361)
T cd06821 147 GEDAEELYRAIATLPGLVLAGLHAYDGHHRNTDLAEREAAADAAYKPVLALREALEAAGLPVPELVAGG-TPS------- 218 (361)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCC-CCC-------
T ss_conf 799999999998589983878986536345678799999999999999999999997499975140579-754-------
Q ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEECCEECCC--------------CCEEEEEEEEECCCCCCCCEEECCCCCCCCCCH
Q ss_conf 531145655565421024530344101112036--------------632588876403468974220055300011001
Q gi|254780371|r 250 PPSSSDYASLIHQYFGNLQCKIILEPGRFLVAD--------------VGILVTKVISIKKSADKTFVILDVAMNDFMRPT 315 (431)
Q Consensus 250 ~~~~~~~~~~i~~~~~~~~~~l~~EPGR~lva~--------------ag~ll~~V~~vK~~~~~~~~~vD~g~~~~~~p~ 315 (431)
+....+. ..+-+-||.|++-| |.+.+++|+.. .....+++|+|.-.+....
T Consensus 219 ---~~~~~~~---------~~~Ev~pG~yvf~D~~~~~~~~~~~~~~Al~Vla~ViS~---p~~~~~~vDaG~k~ls~D~ 283 (361)
T cd06821 219 ---FPFHAAY---------TDVECSPGTFVLWDAGYGSKLPDLGFKPAALVVTRVISH---PTAGRVTLDLGHKAVASDP 283 (361)
T ss_pred ---CCCCCCC---------CCEEECCCEEEECCCHHHHCCCCCCCCEEEEEEEEEEEE---CCCCEEEECCCCCCCCCCC
T ss_conf ---0300037---------744753765898252344226675543226999999714---4899068777644003567
Q ss_pred HHCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEEC
Q ss_conf 11024653222234677761589998100056666562100566888889999679702333402778898665999988
Q gi|254780371|r 316 LYDAYHEINYIVNPAGDRLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMVNG 395 (431)
Q Consensus 316 ~~~~~~~i~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~s~~s~fn~~p~p~~v~v~~ 395 (431)
..|-..... .+. ..+.|. -++.=++... .-..++.||.|.+.--=+ |. .+|.+. .-+++++
T Consensus 284 ----~~p~~~~~~---~~~---~~~~~~-s~EHg~l~~~-~~~~l~vGd~v~i~P~H~-C~----t~~~~~--~~~vv~~ 344 (361)
T cd06821 284 ----PLPRVCLLG---LPD---AEPVGH-SEEHLVLETP-EAARPEIGDVLYGIPRHI-CP----TVALYD--EALVVRD 344 (361)
T ss_pred ----CCCCCEECC---CCC---CEECCC-CCCEEEEECC-CCCCCCCCCEEEEECCCC-CH----HHHHCC--EEEEEEC
T ss_conf ----998514607---998---568045-6866048889-888899999999973984-85----577178--7999999
Q ss_pred CEEE
Q ss_conf 9689
Q gi|254780371|r 396 SQFH 399 (431)
Q Consensus 396 g~~~ 399 (431)
|+..
T Consensus 345 ~~vv 348 (361)
T cd06821 345 GRIV 348 (361)
T ss_pred CEEE
T ss_conf 9999
No 29
>cd06812 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.87 E-value=3e-19 Score=150.91 Aligned_cols=334 Identities=16% Similarity=0.169 Sum_probs=209.5
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCCEEE
Q ss_conf 974997899779999999999998614479789996410799999999997399-2898689998652212578431244
Q gi|254780371|r 23 HVVQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGS-GLDIVSEGELRRALAAPVPAERIVF 101 (431)
Q Consensus 23 ~~~gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~-g~dv~S~~El~~al~~G~~~~~Ii~ 101 (431)
.+..||+.|+|++.+++|++++++.....+.+++..+||++.+.+.+...+.|+ |+.|++..|.+...++|++ +|++
T Consensus 2 ~~l~TPalvvd~~~l~~Ni~~M~~~~~~~g~~lRPH~KTHKs~eia~~Q~~~Ga~gi~~atv~EAe~~a~~G~~--dIl~ 79 (374)
T cd06812 2 AALDTPFLLLDEARMDRNIARLRQRLSRLGVRLRPHLKTAKSLEVARRLLAAGASPATVSTLKEAEAFAEAGYR--DILY 79 (374)
T ss_pred CCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEECHHCCHHHHHHHHHCCCCCEEECCHHHHHHHHHCCCC--EEEE
T ss_conf 87899769972999999999999999876996602610014799999999679984897889999999977987--3999
Q ss_pred CCCCCCCHHHH---HHHHCCCC-CCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 47754201244---44206872-333322024676877411334421589987237786744333223344456887111
Q gi|254780371|r 102 SGVGKTIDEID---LALQSGIY-CFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQ 177 (431)
Q Consensus 102 ~g~~k~~~~l~---~ai~~gv~-~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~ 177 (431)
+.|.- +..+. .+++.+.. .+.|||.+.++.+.+.++..+.+.+|.|-||.+ . .|-|+.+++
T Consensus 80 a~~i~-~~kl~rl~~l~~~~~~~~v~VD~~~~~~~l~~~~~~~g~~~~V~Ievd~G------------~--~RtGv~~~~ 144 (374)
T cd06812 80 AVGIA-PAKLPRVLALRRQGVNLTILLDSVEQAQAVAAFSRQHGVRFPVLIEIDCD------------G--HRGGIAPDS 144 (374)
T ss_pred ECCCC-HHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCC------------C--CCCCCCCCH
T ss_conf 35778-78999999997369948999557999999999999759944699997689------------9--867889706
Q ss_pred C-HHHHHHHHHCCCCCHHHHHHHHHH-CC-CCCHHH----HHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 1-345777641563220023355641-56-442048----9999999988765310266652688068730002665455
Q gi|254780371|r 178 I-HSLYAYASTLPGVKISGVDMHIGS-QI-DQIESF----HKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRP 250 (431)
Q Consensus 178 ~-~~~~~~~~~~~~l~l~GlH~H~GS-~~-~~~~~~----~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~ 250 (431)
. ...++.+...++|++.|++.|-|. +- .+.+.- ....+.+..+.+.+++.|+..+.+..|| -|...... ..
T Consensus 145 ~al~~~~~~~~~~~l~~~G~~~y~Gh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~vs~Gg-Tpt~~~~~-~~ 222 (374)
T cd06812 145 DALLEIARILHDGGAELRGVLTHAGESYACRTPEALAAAAEQERAAAVRAAERLRAAGLPCPVVSVGS-TPTAHFAE-DL 222 (374)
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECC-CCCCEEEC-CC
T ss_conf 99999999974799745467623874347899999999999999999999999986599988785268-87400110-36
Q ss_pred CCHHHHHHHHHHHHCCCCCEEEEEECCEECCC--------------CCEEEEEEEEECCCCCCCCEEECCCCCCCCCCHH
Q ss_conf 31145655565421024530344101112036--------------6325888764034689742200553000110011
Q gi|254780371|r 251 PSSSDYASLIHQYFGNLQCKIILEPGRFLVAD--------------VGILVTKVISIKKSADKTFVILDVAMNDFMRPTL 316 (431)
Q Consensus 251 ~~~~~~~~~i~~~~~~~~~~l~~EPGR~lva~--------------ag~ll~~V~~vK~~~~~~~~~vD~g~~~~~~p~~ 316 (431)
.. + .-+-||-|+.-| |...+++|++++.. +..+++|+|.-.+.+...
T Consensus 223 ~g-------v----------tE~~pG~Yvf~D~~~~~~g~~~~~~~Al~Vl~tViS~~p~--~~~~~iDaG~kals~D~g 283 (374)
T cd06812 223 TG-------V----------TEVRAGVYVFFDLVMAGIGVCGLDDIALSVVTTVIGHQPE--KGWILIDAGWMALSRDRG 283 (374)
T ss_pred CC-------C----------CCCCCCEEEECCHHHHCCCCCCHHHHHHEEEEEEEECCCC--CCCEEECCCCCEEECCCC
T ss_conf 77-------5----------2015721585047775158897565102244576513789--993797577401211457
Q ss_pred HCCCCCC----CCCCCCCCCCCEEEEEEEEEECCCCCEEEE----EEECCCCCCCCEEEEECCCCHHHHHHCCCCCCCCC
Q ss_conf 1024653----222234677761589998100056666562----10056688888999967970233340277889866
Q gi|254780371|r 317 YDAYHEI----NYIVNPAGDRLHIHADIVGPICETGDFIAL----NRKIALPRPGDLLYIEKTGAYGAVQSGTYNSRLLI 388 (431)
Q Consensus 317 ~~~~~~i----~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~----~~~lp~l~~GD~l~i~~~GAY~~s~~s~fn~~p~p 388 (431)
.. .++. -.+....+... ....+.+ +-++.=++.. ....+.++.||.|-+.--=+ |. .+|.++.
T Consensus 284 ~~-~~~~~~g~g~v~~~~g~~~-~~~~v~~-~seEHg~l~~~~~~~~~~~~l~vGd~v~liP~H~-C~----T~~l~~~- 354 (374)
T cd06812 284 TA-RQAVDQGYGLVCDVAGSPL-PGLIVTS-TNQEHGIIALRGGSDLSLPDLPIGTRLRILPNHA-CA----TAAQHDH- 354 (374)
T ss_pred CC-CCCCCCCCCEEECCCCCCC-CCEEEEC-CCCCCEEEECCCCCCCCCCCCCCCCEEEEECCCC-CC----CHHCCCE-
T ss_conf 76-6765566655615778858-9848913-5565059977888755456798488899964985-90----2115787-
Q ss_pred EEEEEE-CCEEEEEEEC
Q ss_conf 599998-8968999824
Q gi|254780371|r 389 PEIMVN-GSQFHIIRPR 404 (431)
Q Consensus 389 ~~v~v~-~g~~~~ir~r 404 (431)
-++++ +|.+.-+..+
T Consensus 355 -~~vv~~~g~V~~~W~~ 370 (374)
T cd06812 355 -YHVLDGEGVVQATWSR 370 (374)
T ss_pred -EEEEECCCEEEEECCC
T ss_conf -9999798989998689
No 30
>cd06817 PLPDE_III_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Eukaryotic D-Serine Dehydratase. This subfamily is composed of chicken D-serine dehydratase (DSD, EC 4.3.1.18) and similar eukaryotic proteins. Chicken DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. It is a fold type III PLP-dependent enzyme with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Experimental data suggest that chicken DSD also exists as dimers. Sequence comparison and biochemical experiments show that chicken DSD is distinct from the ubiquitous bacterial DSDs coded by dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PL
Probab=99.86 E-value=2.2e-19 Score=151.83 Aligned_cols=339 Identities=14% Similarity=0.119 Sum_probs=203.5
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCC--C-CEEEECHHHHHHHHHCCCC--CC
Q ss_conf 97499789977999999999999861447978999641079999999999739--9-2898689998652212578--43
Q gi|254780371|r 23 HVVQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLG--S-GLDIVSEGELRRALAAPVP--AE 97 (431)
Q Consensus 23 ~~~gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G--~-g~dv~S~~El~~al~~G~~--~~ 97 (431)
++..||+.|+|++.+++|++++++.....+.+++..+||++++.|.+...+.| + |+.|++..|.+....+|+. ..
T Consensus 2 ~~l~TPallvd~~~l~~Ni~~M~~~~~~~gv~lRPH~KTHKs~~ia~~Ql~aG~~a~git~atv~EAe~~a~~G~~~~~~ 81 (389)
T cd06817 2 SDLPTPALVIDRAKFKRNCERMLQRAKALGVKFRPHVKTHKTLEGTRLQLGEGRPSRGIVVSTLAEAEFLLPLGEEGRVD 81 (389)
T ss_pred CCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHCCCE
T ss_conf 87899739981999999999999999875995711517651699999999779983538975799999999854516622
Q ss_pred CEEECCCCCCCHHHHHHH---HC-CCCCCCCCCCHHHHHHHHHH-CCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 124447754201244442---06-87233332202467687741-13344215899872377867443332233444568
Q gi|254780371|r 98 RIVFSGVGKTIDEIDLAL---QS-GIYCFNVESESELKTLNQRA-VSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFG 172 (431)
Q Consensus 98 ~Ii~~g~~k~~~~l~~ai---~~-gv~~i~vDs~~el~~l~~~a-~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFG 172 (431)
+|+++.|.- +..++.++ +. .-..+.|||.+.++.|.+.+ .+.+.+..|+|-||.+. .|.|
T Consensus 82 dil~a~pv~-~~kl~rl~~L~~~~~~l~v~VD~~~~v~~L~~~~~~~~g~~l~V~Ievd~G~--------------~RtG 146 (389)
T cd06817 82 DILYGLPVP-PSKLPRLAELSKKLGHLRVMVDNPEQLDFLEQFQPLKSGKKWSVFIKVDCGT--------------HRAG 146 (389)
T ss_pred EEEECCCCC-HHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCC--------------CCCC
T ss_conf 899888578-7899999998553980899974799999999998862698258999978898--------------9678
Q ss_pred CCCC--CCHHHHHHHHHC-CCCCHHHHHHHHHH--CCCCCHH----HHHHHHHHHHHHHHHHC-CCCCCCEEEECCCCCC
Q ss_conf 8711--113457776415-63220023355641--5644204----89999999988765310-2666526880687300
Q gi|254780371|r 173 IPIH--QIHSLYAYASTL-PGVKISGVDMHIGS--QIDQIES----FHKAFKLLRDLTQQLRS-NGHNIQHIDVGGGLGI 242 (431)
Q Consensus 173 i~~~--~~~~~~~~~~~~-~~l~l~GlH~H~GS--~~~~~~~----~~~~~~~~~~~~~~l~~-~g~~~~~ldiGGGf~i 242 (431)
+.++ ++.++++.+.+. ++|++.|||.|-|. +..+.+. ....++.+..+.+.+++ .|....++..|| .|.
T Consensus 147 v~~~~~~~~~l~~~i~~~~~~L~~~Gl~~y~Gh~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~vvs~G~-Tpt 225 (389)
T cd06817 147 VPPESEDAKELIQKLEKASEAVELFGFYSHAGHSYSSRSAEDAKEVLREEIEAVLTAAKKLKSIQGDRKLTLSVGA-TPT 225 (389)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECC-CCC
T ss_conf 8988399999999998567883577886048755578999999999999999999999998862699875899858-887
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEECCC--------------CCEEEEEEEEECCCCCCCCEEECCCC
Q ss_conf 0266545531145655565421024530344101112036--------------63258887640346897422005530
Q gi|254780371|r 243 AYHSDHRPPSSSDYASLIHQYFGNLQCKIILEPGRFLVAD--------------VGILVTKVISIKKSADKTFVILDVAM 308 (431)
Q Consensus 243 ~y~~~~~~~~~~~~~~~i~~~~~~~~~~l~~EPGR~lva~--------------ag~ll~~V~~vK~~~~~~~~~vD~g~ 308 (431)
-... .....+. .........+-||-|+.-| |...+++|+++. +.+.++++|+|.
T Consensus 226 ~~~~-~~~~~~~---------~~~~~~~tEl~pG~Yvf~D~~~~~~g~~~~~~~Al~VlatViS~~--p~~~~~ilDaG~ 293 (389)
T cd06817 226 AHAA-EALVLIP---------APSLSGLLELHAGNYPFYDLQQVATGLCSEEDIAVFVLAEVISVY--PKRNEALVNAGV 293 (389)
T ss_pred CCCC-CCCCCCC---------CCCCCCCEEEECCCEECCCHHHHHCCCCCCCCEEEEEEEEEEEEC--CCCCEEEECCCH
T ss_conf 2203-5544224---------555565149702464726887851699983212589999998553--899839976660
Q ss_pred CCCCCCHHHCCCCCCC-CCCCCCCCCCEEEEEEEEEECCCCCEEEE---EEECCCCCCCCEEEEECCCCHHHHHHCCCCC
Q ss_conf 0011001110246532-22234677761589998100056666562---1005668888899996797023334027788
Q gi|254780371|r 309 NDFMRPTLYDAYHEIN-YIVNPAGDRLHIHADIVGPICETGDFIAL---NRKIALPRPGDLLYIEKTGAYGAVQSGTYNS 384 (431)
Q Consensus 309 ~~~~~p~~~~~~~~i~-~~~~~~~~~~~~~~~i~G~~C~~~D~l~~---~~~lp~l~~GD~l~i~~~GAY~~s~~s~fn~ 384 (431)
-.+....- ...+.. .+..........+...+..+-++.-++.. +.....+++||.|.+.--=+ |. ..|.
T Consensus 294 Kals~D~g--~~~~~~g~~~~~~~~~~~~~~~~v~~lseEHg~l~~~~~~~~~~~l~vGd~v~~iP~H~-C~----Tvnl 366 (389)
T cd06817 294 LALSREPS--RIYGGFGRVIPWPGPIPGHPEWYLVRLSQEHGILQPRDGDLDFKRLKVGSKVRIIPQHA-CI----TAAM 366 (389)
T ss_pred HHEECCCC--CCCCCCCEECCCCCCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEEECCCC-CC----CCCC
T ss_conf 01103567--77788544216777646799728834357515786178765567999888899971885-90----7005
Q ss_pred CCCCEEEEEECC-EE
Q ss_conf 986659999889-68
Q gi|254780371|r 385 RLLIPEIMVNGS-QF 398 (431)
Q Consensus 385 ~p~p~~v~v~~g-~~ 398 (431)
++ .-+++++| ..
T Consensus 367 ~~--~~~vv~~~~~v 379 (389)
T cd06817 367 FP--VYYVVDSGDIV 379 (389)
T ss_pred CC--EEEEEECCCEE
T ss_conf 88--79999798999
No 31
>TIGR01273 speA arginine decarboxylase; InterPro: IPR002985 Pyridoxal-dependent decarboxylases that act on ornithine-, lysine-, arginine- and related substrates can be classified into different families on the basis of sequence similarity , . One of these families includes eukaryotic ornithine decarboxylase (ODC), which catalyses the transformation of ornithine into putrescine; prokaryotic diaminopimelic acid decarboxylase (DAPDC), which catalyses the conversion of diaminopimelic acid into lysine, the final step of lysine biosynthesis; Pseudomonas syringae pv. tabaci protein, tabA, which is probably involved in tabtoxin biosynthesis and is similar to DAPDC; and bacterial and plant biosynthetic arginine decarboxylase (ADC), which catalyses the transformation of arginine into agmatine, the first step in putrescine synthesis from arginine. Although these proteins, which are known collectively as group IV decarboxylases , probably share a common evolutionary origin, their levels of sequence similarity are low, being confined to a few short conserved regions. The tomato ADC gene contains an open reading frame encoding a polypeptide of 502 amino acids and a predicted molecular mass of ~55 kD . The predicted amino acid sequence shares 47 and 38 0dentify with oat and Escherichia coli ADCs, respectively. Gel blot hybridisation experiments show that, in tomato, ADC is encoded by a single gene and is expressed as a transcript of ~2.2 kb in the fruit pericarp and leaf tissues .; GO: 0008792 arginine decarboxylase activity, 0006527 arginine catabolic process, 0008295 spermidine biosynthetic process.
Probab=99.83 E-value=2.5e-19 Score=151.45 Aligned_cols=400 Identities=25% Similarity=0.337 Sum_probs=286.4
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHCCC--------CCCEEEEEEECCCCHHHHHHHHHCC------CCEEEECHHHHHHHH
Q ss_conf 49978997799999999999986144--------7978999641079999999999739------928986899986522
Q gi|254780371|r 25 VQTPFYCYSTTAIEKNYLTFSNAFDG--------MDTMVCYALKANSNQAVIKTLAHLG------SGLDIVSEGELRRAL 90 (431)
Q Consensus 25 ~gTP~yV~d~~~i~~n~~~l~~a~~~--------~~~~i~yAvKaN~~~~il~~l~~~G------~g~dv~S~~El~~al 90 (431)
+..|+.+-..+.+..++..+..+|.. ......|++|.|....++..+...| .|+++.|..|+..++
T Consensus 61 ~~~p~~~~fp~~~~~~~~~~~~~f~~~~~~~~y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~gl~~g~~p~~~~~~ 140 (657)
T TIGR01273 61 LKLPLLLRFPDILQHRLRSLNDAFDNAIEEYGYPGHYQGVYPIKVNQHRGVVEDLVAFGKGYGLPLGLEAGSKPELLLAL 140 (657)
T ss_pred CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 12540010157888998888888877776413676301564132054156899987521014654332357623677876
Q ss_pred HCCC---CCCCEEECCCCCCCHHHHHHHH---CCCC-CCCCCCCHHHHHHHHHHCC--CCCCEEEEEEEECCCCCCCCCC
Q ss_conf 1257---8431244477542012444420---6872-3333220246768774113--3442158998723778674433
Q gi|254780371|r 91 AAPV---PAERIVFSGVGKTIDEIDLALQ---SGIY-CFNVESESELKTLNQRAVS--LGKKAPIAFRVNPDINANTHKK 161 (431)
Q Consensus 91 ~~G~---~~~~Ii~~g~~k~~~~l~~ai~---~gv~-~i~vDs~~el~~l~~~a~~--~~~~~~I~lRinp~~~~~~~~~ 161 (431)
..-- ++..|+++| .|..+.++.++. .|.. .+.++...|++.+.+.+++ .+....+++|+..... +....
T Consensus 141 ~~~~~~~~~~~~~c~g-~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~-~~g~w 218 (657)
T TIGR01273 141 ALATKGNPGAPIVCNG-YKDREYIELALIGRKLGHNVFIVLEKLSELDLVLDEAKKNELGVKPKLGLRARLLSK-GSGKW 218 (657)
T ss_pred HHHCCCCCCCEEEECC-CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHC-CCCCC
T ss_conf 6621467763478616-541457777765431165148885144667899876521222455443300110000-35522
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC-CCEEEECCC
Q ss_conf 3223344456887111134577764156322-00233556415644204899999999887653102666-526880687
Q gi|254780371|r 162 ISTGKKEDKFGIPIHQIHSLYAYASTLPGVK-ISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHN-IQHIDVGGG 239 (431)
Q Consensus 162 ~~tg~~~sKFGi~~~~~~~~~~~~~~~~~l~-l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~-~~~ldiGGG 239 (431)
-.+|+..+|||+...++..+.+.++...-++ +.-+|||+||++.+.......+.....++.+++..|.. ++++|+|||
T Consensus 219 ~~~~g~~~~fgl~~~~~~~~~~~~~~~~~~~~~~~~h~h~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ggg 298 (657)
T TIGR01273 219 GSSGGEKSKFGLSASEVLEVVKLLEENGLLDSLKLLHFHLGSQISNLDDLKKGLREAARLYCELRKLGAPNIDYVDVGGG 298 (657)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCC
T ss_conf 12356532135548999999998764013455666554311100136788888888899999998724553315644765
Q ss_pred CCCCCCCC-CC------CCCHHHHHHHHHHHH-------CCCCCEEEEEECCEECCCCCEEEEEEEEECCCCCCC-C-EE
Q ss_conf 30002665-45------531145655565421-------024530344101112036632588876403468974-2-20
Q gi|254780371|r 240 LGIAYHSD-HR------PPSSSDYASLIHQYF-------GNLQCKIILEPGRFLVADVGILVTKVISIKKSADKT-F-VI 303 (431)
Q Consensus 240 f~i~y~~~-~~------~~~~~~~~~~i~~~~-------~~~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~-~-~~ 303 (431)
+++.|... .. ...+++|+..+...+ ....|.++.|.||++.+....+++.+..+....... . -.
T Consensus 299 lg~~y~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~c~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (657)
T TIGR01273 299 LGVDYDGTKSSSSDCSVNYGLEEYASDVVGALREVCDDKGLPHPVIITESGRALTAHHAVLVTNVLGVEAHPEDPPDPEP 378 (657)
T ss_pred CCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHCCHHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 32244543234320011023678888999999988874077676233026630000002111133311234556542000
Q ss_pred EC-C----------CCCCC-------------------------------------------------------------
Q ss_conf 05-5----------30001-------------------------------------------------------------
Q gi|254780371|r 304 LD-V----------AMNDF------------------------------------------------------------- 311 (431)
Q Consensus 304 vD-~----------g~~~~------------------------------------------------------------- 311 (431)
.+ . .+..+
T Consensus 379 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (657)
T TIGR01273 379 LDEDAPPLVRGLWETLEDLYGPLDRRSLLELLHDALHLLEEAVEGFALGYLDLEERAWAEQLYLAILRKLHGKLSAKNKD 458 (657)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 13430268888889999874000024678888888888877776553010014666667899999998887766642144
Q ss_pred CCCHH--------------------------HCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEE-------EE--EE
Q ss_conf 10011--------------------------102465322223467776158999810005666656-------21--00
Q gi|254780371|r 312 MRPTL--------------------------YDAYHEINYIVNPAGDRLHIHADIVGPICETGDFIA-------LN--RK 356 (431)
Q Consensus 312 ~~p~~--------------------------~~~~~~i~~~~~~~~~~~~~~~~i~G~~C~~~D~l~-------~~--~~ 356 (431)
.+|.+ .+...|+.++. ...+.+.....+.--+|++.-.+. .. .+
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~f~~~pd~w~~~~~~p~~p~~-~l~~~p~~~~~~~d~~cd~dg~~~~~~~~~~~~~~~p 537 (657)
T TIGR01273 459 HRPVLDELQERLADKYLVNFSLFQSLPDAWGIDQLFPILPLE-RLDEKPDRRAVLLDLTCDSDGKVDKFVGGQGLESTLP 537 (657)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHH-HCCCCCHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCC
T ss_conf 215788766666666653124443143111010101222200-0243200111010001477520344412355422133
Q ss_pred CC--CC---CCC-CEEEEECCCCHHHHHHCCCCCCCCCEE--EEEE-CC---EEEEEEECCCHHHHHH-CCCCCHHHHHC
Q ss_conf 56--68---888-899996797023334027788986659--9998-89---6899982489889973-08885688623
Q gi|254780371|r 357 IA--LP---RPG-DLLYIEKTGAYGAVQSGTYNSRLLIPE--IMVN-GS---QFHIIRPRMTFQELIE-LDSIPAWLQKT 423 (431)
Q Consensus 357 lp--~l---~~G-D~l~i~~~GAY~~s~~s~fn~~p~p~~--v~v~-~g---~~~~ir~ret~ed~~~-~~~~p~~~~~~ 423 (431)
++ .+ ..+ -++.|.-+|||...++..+|.+.-|.. |... +| ....++..++.+|+++ .+.-|..+.+.
T Consensus 538 ~~~~~~~gc~~~~~~~g~~~~g~y~~~lg~~h~lfg~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 617 (657)
T TIGR01273 538 LHELDPNGCDEGGYLLGFFLVGAYQEILGDLHNLFGDTDAVEVVLDGDGGGYEVELVLEGDTTEDLLRYVSYDPEELLTL 617 (657)
T ss_pred CCCCCCCCCCCCCCEEEEEEHHHHHHHHCCHHHHCCCCCEEEEEECCCCCCEEHHHHHHCCHHHHHHHHHCCCHHHHHHH
T ss_conf 45556667776640564210223687631122204885147887627875300123430202788888631466899999
Q ss_pred CCCC
Q ss_conf 4321
Q gi|254780371|r 424 PKQS 427 (431)
Q Consensus 424 ~~~~ 427 (431)
-++.
T Consensus 618 ~~~~ 621 (657)
T TIGR01273 618 LRDL 621 (657)
T ss_pred HHHH
T ss_conf 9886
No 32
>cd06813 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 2. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.82 E-value=7.6e-17 Score=134.55 Aligned_cols=353 Identities=14% Similarity=0.110 Sum_probs=206.1
Q ss_pred HHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHC-CC-CEEEECHHHHHHHHHCCCC
Q ss_conf 999999749978997799999999999986144797899964107999999999973-99-2898689998652212578
Q gi|254780371|r 18 LEKLAHVVQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHL-GS-GLDIVSEGELRRALAAPVP 95 (431)
Q Consensus 18 l~~La~~~gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~-G~-g~dv~S~~El~~al~~G~~ 95 (431)
+.+..+...||+.|+|+|.+++|++++.+...+.+ +.-+.|+.+++.+++.+.+. |+ |+.|.+..|.+.....|++
T Consensus 2 ~~~~~a~l~tP~lvvDld~l~~Ni~~m~~~a~g~~--iR~~~Ks~k~~~l~~~~l~~~g~~Gi~~~~~~EA~~la~~G~~ 79 (388)
T cd06813 2 YREAFAGLDAPFAFVDLDALDANAADLVRRAGGKP--IRVASKSVRCRALLRRVLAAPGFQGVMAFTLAEALWLARQGFD 79 (388)
T ss_pred HHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHCCCC--CEEECCCCCCHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCC
T ss_conf 01231278997577539999999999999737998--1665040479999999986059870686559999999866998
Q ss_pred CCCEEECCCCCCCHHHHHHH---HCCCC-CCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 43124447754201244442---06872-333322024676877411334421589987237786744333223344456
Q gi|254780371|r 96 AERIVFSGVGKTIDEIDLAL---QSGIY-CFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKF 171 (431)
Q Consensus 96 ~~~Ii~~g~~k~~~~l~~ai---~~gv~-~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKF 171 (431)
+|+++.|...+..++... +.+.. ++.|||.+.++.+.+.+++.+...+|+|-|+.+...+ .+..|.. +-
T Consensus 80 --DILl~~p~v~~~~l~~l~~~~~~~~~i~~~VD~~~~l~~l~~aa~~~g~~l~V~ieiD~g~~r~---G~~~G~~--Rs 152 (388)
T cd06813 80 --DILVAYPSVDRAALRELAADPKLGATITLMVDSVEHLDLLDAVAAPMRVEVRVCIDIDASLRFG---GLHFGVR--RS 152 (388)
T ss_pred --CEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC---CCCCCCC--CC
T ss_conf --1897788889999999985442377179997288899999999986599569999971787666---7414767--68
Q ss_pred CC-CCCCCHHHHHHHHHCCCCCHHHHHHHHHH--CCCC--CH--------------HHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 88-71111345777641563220023355641--5644--20--------------489999999988765310266652
Q gi|254780371|r 172 GI-PIHQIHSLYAYASTLPGVKISGVDMHIGS--QIDQ--IE--------------SFHKAFKLLRDLTQQLRSNGHNIQ 232 (431)
Q Consensus 172 Gi-~~~~~~~~~~~~~~~~~l~l~GlH~H~GS--~~~~--~~--------------~~~~~~~~~~~~~~~l~~~g~~~~ 232 (431)
|+ +++++.++++.+.+.++|++.||+.|-|. +..| +. ...+..+....+.+.+++.|.+++
T Consensus 153 gV~~~~~a~~La~~I~~~p~L~~~Glm~Yeghia~~~d~~~~~~~~~~~~~~~~~~s~~e~~~r~~~~v~al~~~g~~~~ 232 (388)
T cd06813 153 PLHTPAQALALAKAIAARPGLRLVGLMGYEAQIAGVGDSVPGKRVKSAVIRLLKKRSIKELAERRAAVVAALRAEGEDLE 232 (388)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 88998999999999861999748889720065567876552124568999999999999999999999999996199975
Q ss_pred EEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEECCCCCEEEEEEEEECCCCCCCCEEECCCCCCCC
Q ss_conf 68806873000266545531145655565421024530344101112036632588876403468974220055300011
Q gi|254780371|r 233 HIDVGGGLGIAYHSDHRPPSSSDYASLIHQYFGNLQCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMNDFM 312 (431)
Q Consensus 233 ~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~~~~~~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~vD~g~~~~~ 312 (431)
++| |||-|. |........+.++..-= -. +.+..+=.+..+--.+|..+.++|+. .....++++++|-....
T Consensus 233 ~Vn-gGGTgt-~~~~~~~~~~tEv~aGS-~l---~~p~~fD~~~~~~~~PA~~~a~~Vv~---~P~p~~~t~~gGg~~aS 303 (388)
T cd06813 233 FVN-GGGTGS-LESTAADAVVTEVTAGS-GL---YAPALFDHYRSFQPEPAAGFALPVVR---RPAPGIVTCLGGGYIAS 303 (388)
T ss_pred EEE-CCCCCC-EECCCCCCCCEEECCCC-EE---ECCHHCCCCCCCCCCCEEEEECCEEE---CCCCCEEEEECCCEEEC
T ss_conf 892-489766-41235688521655545-79---84112032000587760788724783---35998799928970543
Q ss_pred CCHHHCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEE
Q ss_conf 00111024653222234677761589998100056666562100566888889999679702333402778898665999
Q gi|254780371|r 313 RPTLYDAYHEINYIVNPAGDRLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIM 392 (431)
Q Consensus 313 ~p~~~~~~~~i~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~s~~s~fn~~p~p~~v~ 392 (431)
-+.- ..+.|. +..+.+-. ...+.|.. +....+.- -.-..+++||+|.|..+=+= . .+|.+. ...+
T Consensus 304 g~~g-~~~~p~--p~~p~g~~---~~~~eG~~-e~q~~l~~-~~~~~l~vGD~v~~rp~~~~--~---~~~~f~--~l~v 368 (388)
T cd06813 304 GPAG-KDRLPV--PWLPAGLK---LLPLEGAG-EVQTPLTG-PAAERLGIGDPVWFRHAKAG--E---LCERFN--ELHL 368 (388)
T ss_pred CCCC-CCCCCC--CCCCCCCC---CCCCCCCC-CCCCEEEC-CCCCCCCCCCEEEEECCCCC--H---HHHHCC--EEEE
T ss_conf 5777-778774--11799765---44555787-64231315-87776999998999589733--6---666128--6999
Q ss_pred EECCEEEEEEE
Q ss_conf 98896899982
Q gi|254780371|r 393 VNGSQFHIIRP 403 (431)
Q Consensus 393 v~~g~~~~ir~ 403 (431)
|++|+..-...
T Consensus 369 v~gg~vv~~wP 379 (388)
T cd06813 369 VRGGEIVGTVP 379 (388)
T ss_pred EECCEEEEEEE
T ss_conf 98999999985
No 33
>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=99.81 E-value=3.8e-17 Score=136.59 Aligned_cols=318 Identities=16% Similarity=0.200 Sum_probs=217.2
Q ss_pred CCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCC-CHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCCEEECCC
Q ss_conf 9789977999999999999861447978999641079-9999999997399-2898689998652212578431244477
Q gi|254780371|r 27 TPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANS-NQAVIKTLAHLGS-GLDIVSEGELRRALAAPVPAERIVFSGV 104 (431)
Q Consensus 27 TP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~-~~~il~~l~~~G~-g~dv~S~~El~~al~~G~~~~~Ii~~g~ 104 (431)
.|...+|++.|+.|++.+++.+...+.++.--+|||. .+.|.+.+.+.|+ ++-|+...|+...+++|+....+++..|
T Consensus 1 ~PrleIdL~~l~~N~~~l~~~~~~~gi~~~~VvKa~aG~~~iA~~l~~~G~~~lavari~e~~~LR~~Gi~~pillL~~p 80 (353)
T cd06815 1 YPRLEINLSKIRHNAKVLVELCKSRGIEVTGVTKVVCGDPEIAEALLEGGITHLADSRIENLKKLKDLGISGPKMLLRIP 80 (353)
T ss_pred CCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCCEEEECCC
T ss_conf 97699839999999999999760549889999844689599999999879999997028999999975999978997268
Q ss_pred CCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 54201244442068723333220246768774113344215899872377867443332233444568871111345777
Q gi|254780371|r 105 GKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAY 184 (431)
Q Consensus 105 ~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~ 184 (431)
. +++++.++++....+ +-+++.++.|.+.|++.++..+|-|-| +|| ..|.|+.++++.++++.
T Consensus 81 ~--~se~~~vv~~~dis~-~se~~~i~aLs~~A~~~gk~~~V~l~V------------DtG--m~R~Gv~ped~~~~~~~ 143 (353)
T cd06815 81 M--LSEVEDVVKYADISL-NSELETIKALSEEAKKQGKIHKIILMV------------DLG--DLREGVLPEDLLDFVEE 143 (353)
T ss_pred C--HHHHHHHHHHCEEEE-CCCHHHHHHHHHHHHHCCCEEEEEEEE------------ECC--CCCCCCCHHHHHHHHHH
T ss_conf 8--889999987330420-287999999999999869847899999------------689--99578898999999999
Q ss_pred HHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH-CCCCCCCEEEECCCCCCCCCCCCC-CCCHHHH--HHHH
Q ss_conf 64156322002335564156442048999999998876531-026665268806873000266545-5311456--5556
Q gi|254780371|r 185 ASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLR-SNGHNIQHIDVGGGLGIAYHSDHR-PPSSSDY--ASLI 260 (431)
Q Consensus 185 ~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~~~ldiGGGf~i~y~~~~~-~~~~~~~--~~~i 260 (431)
+.+++||++.||-+|.++.- ...+-.+.+..+.++.+.+. +.|.+++++.-|+--.++...... +-.+.++ +++|
T Consensus 144 I~~lp~i~l~GI~ThfaC~~-gv~pt~~~~~~l~~~~~~ie~~~g~~l~~iSgGnS~~l~~~~~~~~~~~IN~lRiGe~i 222 (353)
T cd06815 144 ILKLPGIELVGIGTNLGCYG-GVLPTEENMGKLVELKEEIEKEFGIKLPIISGGNSASLPLLLKGELPGGINQLRIGEAI 222 (353)
T ss_pred HHCCCCCEEEEEEECHHHCC-CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCCEE
T ss_conf 86599959999888763578-88999999999999999999984998766970537768988558985432103333158
Q ss_pred HHHHCCCCCEEEEEECCEECCCCCEEEEEEEEECCCCCCCC----------------------EEECCCCCCCCCCHHHC
Q ss_conf 54210245303441011120366325888764034689742----------------------20055300011001110
Q gi|254780371|r 261 HQYFGNLQCKIILEPGRFLVADVGILVTKVISIKKSADKTF----------------------VILDVAMNDFMRPTLYD 318 (431)
Q Consensus 261 ~~~~~~~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~----------------------~~vD~g~~~~~~p~~~~ 318 (431)
- ++. ++ ..-+|=-.+--++.+|.++|+-+|......| ++++-|.-+.
T Consensus 223 ~--~G~-~~-~~~~~i~~l~~d~~~L~aeViEik~kps~p~g~~g~~afG~~~~f~d~g~~~rAIl~iG~~D~------- 291 (353)
T cd06815 223 L--LGR-ET-TYNEPIPGLYQDAFTLEAEIIEIKEKPSVPIGEIGLDAFGNKPEFEDRGIRKRAILAIGRQDV------- 291 (353)
T ss_pred E--EEC-CC-CCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEECCCCCEEEEEEECCCCCC-------
T ss_conf 9--612-57-777643000464189999999950467778763122577875224268841799997665557-------
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEEC--CCCCCCCEEEEEC-CCCHHHHHHCCCCC
Q ss_conf 246532222346777615899981000566665621005--6688888999967-97023334027788
Q gi|254780371|r 319 AYHEINYIVNPAGDRLHIHADIVGPICETGDFIALNRKI--ALPRPGDLLYIEK-TGAYGAVQSGTYNS 384 (431)
Q Consensus 319 ~~~~i~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~l--p~l~~GD~l~i~~-~GAY~~s~~s~fn~ 384 (431)
.+..+ .+......|.|. |+|.+.-+..- ..+++||.+-|.- =||--.+|.|.|..
T Consensus 292 ---~~~~l-----~p~~~~i~IlGa---sSDhlivDit~~~~~~kvGD~i~F~l~Y~a~l~~m~s~~v~ 349 (353)
T cd06815 292 ---DPDGL-----TPVDNGIEILGA---SSDHLILDITDSDRDYKVGDEIRFNLDYGALLRAMTSPYVE 349 (353)
T ss_pred ---CHHHC-----EECCCCEEEEEC---CCCEEEEECCCCCCCCCCCCEEEEECCHHHHHHHHCCCCEE
T ss_conf ---77563-----477998099822---57548997767768888898899965999999984589814
No 34
>cd00430 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with activ
Probab=99.81 E-value=2e-16 Score=131.72 Aligned_cols=309 Identities=17% Similarity=0.218 Sum_probs=204.9
Q ss_pred EEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECC----CCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCCEEECC
Q ss_conf 8997799999999999986144797899964107----99999999997399-289868999865221257843124447
Q gi|254780371|r 29 FYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKAN----SNQAVIKTLAHLGS-GLDIVSEGELRRALAAPVPAERIVFSG 103 (431)
Q Consensus 29 ~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN----~~~~il~~l~~~G~-g~dv~S~~El~~al~~G~~~~~Ii~~g 103 (431)
..-+|++.|++|++.+++... .+.+++--+||| -...|.+.+.+.|+ +|-|++..|....+++|....-+++++
T Consensus 3 ~~eIdl~al~~N~~~lr~~~~-~~~ki~aVVKAnAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~LR~~g~~~~Ilvl~~ 81 (367)
T cd00430 3 WAEIDLDALRHNLRVIRRLLG-PGTKIMAVVKADAYGHGAVEVAKALEEAGADYFAVATLEEALELREAGITAPILVLGG 81 (367)
T ss_pred EEEEEHHHHHHHHHHHHHHCC-CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEECC
T ss_conf 999819999999999998568-9986999996554657789999999987979999854999999997299998599668
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 75420124444206872333322024676877411334421589987237786744333223344456887111134577
Q gi|254780371|r 104 VGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYA 183 (431)
Q Consensus 104 ~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~ 183 (431)
+ .++++..++++++ ..++.|+++++.+.+.+.+.+++.+|-|.+| ||. +|+|++++++.++++
T Consensus 82 ~--~~~~~~~~~~~~l-~~~i~s~~~l~~l~~~~~~~~~~~~vhlkiD------------TGM--~RlG~~~~e~~~~~~ 144 (367)
T cd00430 82 T--PPEEAEEAIEYDL-TPTVSSLEQAEALSAAAARLGKTLKVHLKID------------TGM--GRLGFRPEEAEELLE 144 (367)
T ss_pred C--CHHHHHHHHHCCE-EEEECCHHHHHHHHHHHHHCCCCCEEEEEEE------------CCC--CCCCCCHHHHHHHHH
T ss_conf 9--9799999996180-7687869999999999887599823999980------------688--757889799999999
Q ss_pred HHHHCCCCCHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 7641563220023355641564-420489999999988765310266652688068730002665455311456555654
Q gi|254780371|r 184 YASTLPGVKISGVDMHIGSQID-QIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQ 262 (431)
Q Consensus 184 ~~~~~~~l~l~GlH~H~GS~~~-~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~ 262 (431)
.+++.+++++.|+-.|..+--. +......-++.-.++.+.+++.+++...+.+..--++-..++ ..+|+-..+-.+--
T Consensus 145 ~l~~~~~l~~~gi~SHla~ad~~~~~~~~~Q~~~F~~~~~~l~~~~~~~~~~h~aNS~~~l~~~~-~~~d~vRpGi~LYG 223 (367)
T cd00430 145 ALKALPGLELEGVFTHFATADEPDKAYTRRQLERFLEALAELEEAGIPPPLKHLANSAAILRFPE-AHFDMVRPGIALYG 223 (367)
T ss_pred HHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCC-CCCCEEECCEEEEC
T ss_conf 99868996188997402357887707889999999999999986489976376016897773950-03880601654426
Q ss_pred HHCCCCCEEEEEECCEECCCCCEEEEEEEEECCCC-------C--------CCCEEECCCCCCCCCCHHHCCCCCCCCCC
Q ss_conf 21024530344101112036632588876403468-------9--------74220055300011001110246532222
Q gi|254780371|r 263 YFGNLQCKIILEPGRFLVADVGILVTKVISIKKSA-------D--------KTFVILDVAMNDFMRPTLYDAYHEINYIV 327 (431)
Q Consensus 263 ~~~~~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~-------~--------~~~~~vD~g~~~~~~p~~~~~~~~i~~~~ 327 (431)
....... +-..-.-++..+-++|..+|+-. + .+.+++..|..+-..-.+.+ ....+.
T Consensus 224 ~~p~~~~-----~~~~~Lkpv~~l~a~ii~ir~v~~G~~VGYg~~~~a~~~~~ia~v~iGYaDG~pr~~~~---~~~v~i 295 (367)
T cd00430 224 LYPSPEV-----KSPLGLKPVMSLKARVVQVKTVPAGEGVSYGRTYTAPRPTRIATLPVGYADGYPRALSN---KGEVLI 295 (367)
T ss_pred CCCCCCC-----CCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCC---CCEEEE
T ss_conf 8887344-----55668621079999999989718979234899403587834899711122564510268---868999
Q ss_pred CCCCCCCEEEEEEEEEECCCCCEEEEEE-ECCCCCCCCEEEEECCC
Q ss_conf 3467776158999810005666656210-05668888899996797
Q gi|254780371|r 328 NPAGDRLHIHADIVGPICETGDFIALNR-KIALPRPGDLLYIEKTG 372 (431)
Q Consensus 328 ~~~~~~~~~~~~i~G~~C~~~D~l~~~~-~lp~l~~GD~l~i~~~G 372 (431)
..+.+-|.|..|+ |.+.-+. .+|++++||.+.+..-.
T Consensus 296 ------~g~~~~ivGrvsM--D~~~vdvt~~~~~~~Gd~V~l~G~~ 333 (367)
T cd00430 296 ------RGKRAPIVGRVCM--DQTMVDVTDIPDVKVGDEVVLFGRQ 333 (367)
T ss_pred ------CCEEEEEEEEEEC--CEEEEECCCCCCCCCCCEEEEECCC
T ss_conf ------9999256337505--5489988899889999999998189
No 35
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase. This family includes eukaryotic D-serine dehydratases (DSD), cryptic DSDs from bacteria, D-threonine aldolases (D-TA), low specificity D-TAs, and similar uncharacterized proteins. DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Members of this family are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity to AR, it is poss
Probab=99.76 E-value=3.2e-15 Score=123.54 Aligned_cols=313 Identities=17% Similarity=0.142 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHH
Q ss_conf 99999999998614479789996410799999999997399-28986899986522125784312444775420124444
Q gi|254780371|r 36 AIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGS-GLDIVSEGELRRALAAPVPAERIVFSGVGKTIDEIDLA 114 (431)
Q Consensus 36 ~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~-g~dv~S~~El~~al~~G~~~~~Ii~~g~~k~~~~l~~a 114 (431)
.+++|++++++.....+.+++..+||++.+.+.+...+.|+ |+-|++..|.+...+.|++ +|++..|.-.+..++.+
T Consensus 1 Ale~Ni~~m~~~~~~~g~~lRPH~KThK~~~i~~~ql~~Ga~gi~~atl~EAe~~~~~G~~--dIl~a~pi~~~~~l~rl 78 (345)
T cd07376 1 ALEANISRMAARARASGVRLRPHVKTHKSPELAQRQLAAGARGVTVATLAEAETFAEAGVK--DILMAYPLVGPAAIARL 78 (345)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECHHCCHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCC--CEEEECCCCCHHHHHHH
T ss_conf 9789999999999976997667750004899999998679970999469999999976998--38996688998999999
Q ss_pred ---HHCCCC-CCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC--HHHHHHHHHC
Q ss_conf ---206872-3333220246768774113344215899872377867443332233444568871111--3457776415
Q gi|254780371|r 115 ---LQSGIY-CFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQI--HSLYAYASTL 188 (431)
Q Consensus 115 ---i~~gv~-~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~--~~~~~~~~~~ 188 (431)
.+.+.. .+.|||.+.++.|.+.+...+.+.+|+|.|+.+ . .|-|+.+++. ..+++.+.+.
T Consensus 79 ~~l~~~~~~i~~~VDs~~~~~~l~~~a~~~~~~~~V~ievD~G------------~--~R~Gv~~~~~~~l~l~~~i~~~ 144 (345)
T cd07376 79 AGLLRQEAEFHVLVDSPEALAALAAFAAAHGVRLRVMLEVDVG------------G--HRSGVRPEEAAALALADAVQAS 144 (345)
T ss_pred HHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEEECCC------------C--CCCCCCCCHHHHHHHHHHHHCC
T ss_conf 9986349838999708999999999998659827899997889------------9--8588888779999999998539
Q ss_pred CCCCHHHHHHHHHH--CCCCCHHHHH----HHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 63220023355641--5644204899----99999988765310266652688068730002665455311456555654
Q gi|254780371|r 189 PGVKISGVDMHIGS--QIDQIESFHK----AFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQ 262 (431)
Q Consensus 189 ~~l~l~GlH~H~GS--~~~~~~~~~~----~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~ 262 (431)
++|++.||++|-|. +..+.+...+ .++.+.+..+.+ +.|+...+++. ||-|.- ........ +
T Consensus 145 ~~l~l~G~~~y~Gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~vs~-GgTpt~-~~~~~~~~-------~-- 212 (345)
T cd07376 145 PGLRLAGVMAYEGHIYGAGGAREGAQARDQAVAAVRAAAAAA-ERGLACPTVSG-GGTPTY-QLTAGDRA-------V-- 212 (345)
T ss_pred CCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCEEEC-CCCCCC-EEECCCCC-------C--
T ss_conf 991898999747120699998999999999999999999998-64999888955-788874-10336887-------3--
Q ss_pred HHCCCCCEEEEEECCEE-------------CCCCCEEEEEEEEECCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCCCCC
Q ss_conf 21024530344101112-------------03663258887640346897422005530001100111024653222234
Q gi|254780371|r 263 YFGNLQCKIILEPGRFL-------------VADVGILVTKVISIKKSADKTFVILDVAMNDFMRPTLYDAYHEINYIVNP 329 (431)
Q Consensus 263 ~~~~~~~~l~~EPGR~l-------------va~ag~ll~~V~~vK~~~~~~~~~vD~g~~~~~~p~~~~~~~~i~~~~~~ 329 (431)
..+-||-|+ ..++...+++|+..- ....++++|+|.-.+....-.. .+. ..+..+
T Consensus 213 --------tEl~~G~yvf~D~~~~~~~~~~~~~aa~~v~~Vis~~--~~~~~~~vd~G~kals~d~~~~-~~~-~~~~~p 280 (345)
T cd07376 213 --------TELRAGSYVFMDTGFDTLGACAQRPAAFRVTTVISRP--APTGRAVLDAGWKASSADTAFI-GGG-AVLGRP 280 (345)
T ss_pred --------EEECCCEEEECCHHHCCCCCCCCCCEEEEEEEEEEEC--CCCCEEEECCCCCCCCCCCCCC-CCC-CCCCCC
T ss_conf --------2874634896421320136898433008998666522--8886289886222223313567-888-755897
Q ss_pred CCCCCEEEEEEEEEECCCCCEEEE---EEECCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCEEEEEEE
Q ss_conf 677761589998100056666562---10056688888999967970233340277889866599998896899982
Q gi|254780371|r 330 AGDRLHIHADIVGPICETGDFIAL---NRKIALPRPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMVNGSQFHIIRP 403 (431)
Q Consensus 330 ~~~~~~~~~~i~G~~C~~~D~l~~---~~~lp~l~~GD~l~i~~~GAY~~s~~s~fn~~p~p~~v~v~~g~~~~ir~ 403 (431)
... +.+.. ++.-.+.. ....+.++.||.|.|...=+ |. .+|.+. --++|++|+..-+..
T Consensus 281 -----~~~--~~~~s-~ehg~~~~~~~~~~~~~l~vGd~v~liP~H~-C~----t~~~~~--~~~vv~~~~v~~~Wp 342 (345)
T cd07376 281 -----ELR--AVLLS-EEHEGRSEPLNTPDLDDLPIGDRVFLVPNHA-CE----TVALHD--ELYVVEGGRVAATWP 342 (345)
T ss_pred -----CCE--EEEEC-CCCCEEECCCCCCCCCCCCCCCEEEEEECCC-CH----HHHHCC--EEEEEECCEEEEEEE
T ss_conf -----702--55301-5753045156677778999999999980885-37----777289--899999999999996
No 36
>PRK00053 alr alanine racemase; Reviewed
Probab=99.71 E-value=1e-14 Score=120.05 Aligned_cols=309 Identities=17% Similarity=0.169 Sum_probs=188.4
Q ss_pred EEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCC----CHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCCEEECCC
Q ss_conf 9977999999999999861447978999641079----9999999997399-2898689998652212578431244477
Q gi|254780371|r 30 YCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANS----NQAVIKTLAHLGS-GLDIVSEGELRRALAAPVPAERIVFSGV 104 (431)
Q Consensus 30 yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~----~~~il~~l~~~G~-g~dv~S~~El~~al~~G~~~~~Ii~~g~ 104 (431)
.-+|++.|++|++.+++..+ +.+++--+|||- ...+.+.+.+.|+ .|-|++..|....+++|+...=++++++
T Consensus 6 ~eIdl~al~~N~~~i~~~~~--~~~i~aVVKAnAYGhG~~~va~~l~~~Gv~~faVa~~~EAi~LR~~g~~~~Ilvl~~~ 83 (360)
T PRK00053 6 AEIDLDALAHNLRQLRQLAG--SSKLMAVVKANAYGHGAVEVAKTLLEAGADGFGVATLEEALELREAGITAPILLLGGF 83 (360)
T ss_pred EEEEHHHHHHHHHHHHHHCC--CCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEECCC
T ss_conf 99839999999999996589--9809999944225488999999999879799999189999999963999998997699
Q ss_pred CCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 54201244442068723333220246768774113344215899872377867443332233444568871111345777
Q gi|254780371|r 105 GKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAY 184 (431)
Q Consensus 105 ~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~ 184 (431)
.+++++.++++++ +.++-|+++++.+.+.+.+. ..+|-|.+ +||. +|+|++++|+.++++.
T Consensus 84 --~~~~~~~~~~~~l-~~~i~s~~~l~~~~~~~~~~--~~~vhlki------------DTGM--~RlG~~~~e~~~~~~~ 144 (360)
T PRK00053 84 --FEADLPLIVAYDI-ETAVHSLEQLRALEKAALSA--PLKVHLKV------------DTGM--HRLGVRPEEAEAALER 144 (360)
T ss_pred --CHHHHHHHHHCCC-EEEECCHHHHHHHHHHCCCC--CCEEEEEE------------CCCC--CCCCCCHHHHHHHHHH
T ss_conf --9799999997598-89999899999999746158--95499998------------5898--7478887899999999
Q ss_pred HHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCC-CCCCCCCCCHHHHHHHHHH
Q ss_conf 6415632200233556415-6442048999999998876531026665268806873000-2665455311456555654
Q gi|254780371|r 185 ASTLPGVKISGVDMHIGSQ-IDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIA-YHSDHRPPSSSDYASLIHQ 262 (431)
Q Consensus 185 ~~~~~~l~l~GlH~H~GS~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~-y~~~~~~~~~~~~~~~i~~ 262 (431)
+++++++++.|+-.|..+- ..+......-++.-.++.+.+++.+.....-|=+|=+-.| ++.|-..+.+.-|+-.
T Consensus 145 i~~~~~l~~~gi~SHla~AD~~~~~~~~~Q~~~F~~~~~~l~~~~~~~h~aNSag~l~~~~~~~d~VR~Gi~lYG~~--- 221 (360)
T PRK00053 145 LRALPNLRLEGIMSHFATADEPDNSYTDEQLARFKAFLAGLPGKGKVRHLANSAAILRWPDLHFDWVRPGIALYGYS--- 221 (360)
T ss_pred HHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEHHCCHHHHCCCCCCCCEECCCCEEECCC---
T ss_conf 98589982789974112478888589999999999999863107969864236987709733477152380102798---
Q ss_pred HHCCCCCEEEEEECCEECCCCCEEEEEEEEECCCC-------CCCCEEECCCCCCCCCCHHHCCCCCCCCCCCCCC-CCC
Q ss_conf 21024530344101112036632588876403468-------9742200553000110011102465322223467-776
Q gi|254780371|r 263 YFGNLQCKIILEPGRFLVADVGILVTKVISIKKSA-------DKTFVILDVAMNDFMRPTLYDAYHEINYIVNPAG-DRL 334 (431)
Q Consensus 263 ~~~~~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~-------~~~~~~vD~g~~~~~~p~~~~~~~~i~~~~~~~~-~~~ 334 (431)
|.-.......-.-++..+-++|..+|+-. |.+|. .+-.+...+-|.-|.--++- .+.+... --.
T Consensus 222 ------P~~~~~~~~~~lkpv~sl~a~I~~i~~v~~G~~VgYg~t~~-a~~~~~ia~v~iGYaDG~~R-~ls~~~~v~i~ 293 (360)
T PRK00053 222 ------PSGEDLGLDLGLKPAMTLKSSLIAVRELKAGEGVGYGGTFT-AERDTRIAVVPIGYADGYPR-NLPNGTPVLVN 293 (360)
T ss_pred ------CCCCCCCCCCCCEEEEEEEEEEEEEEECCCCCEECCCCCEE-CCCCCEEEEEEEECCCCCCC-CCCCCCEEEEC
T ss_conf ------77554454558645699999800578527988243799314-57783699971031456343-14799689999
Q ss_pred EEEEEEEEEECCCCCEEEEEE-ECCCCCCCCEEEEECCC
Q ss_conf 158999810005666656210-05668888899996797
Q gi|254780371|r 335 HIHADIVGPICETGDFIALNR-KIALPRPGDLLYIEKTG 372 (431)
Q Consensus 335 ~~~~~i~G~~C~~~D~l~~~~-~lp~l~~GD~l~i~~~G 372 (431)
.+.+-|.|..|+ |.+.-+. .+|..++||.+.+.+-.
T Consensus 294 G~~~pivGrv~M--D~~~vdvt~~~~~~~Gd~V~l~G~~ 330 (360)
T PRK00053 294 GRRVPIVGRVSM--DQLTVDLTDIPQVKVGDEVTLWGEA 330 (360)
T ss_pred CEEEEEECEEEC--CEEEEECCCCCCCCCCCEEEEECCC
T ss_conf 999588478604--5389988899889999999998999
No 37
>PRK13340 alanine racemase; Reviewed
Probab=99.70 E-value=3e-14 Score=116.88 Aligned_cols=309 Identities=20% Similarity=0.228 Sum_probs=193.4
Q ss_pred CCHHHHHHHCCCCE-----EEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCC----CHHHHHHHHHCCC-CEEEECHHH
Q ss_conf 42999999749978-----9977999999999999861447978999641079----9999999997399-289868999
Q gi|254780371|r 16 VSLEKLAHVVQTPF-----YCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANS----NQAVIKTLAHLGS-GLDIVSEGE 85 (431)
Q Consensus 16 ~~l~~La~~~gTP~-----yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~----~~~il~~l~~~G~-g~dv~S~~E 85 (431)
.++++++.....|+ .=+|++.|++|++.+++.++ .+.+++--+|||- ...|.+.+.+.|+ +|-|++..|
T Consensus 23 ~~~~~~~~~~~~~~~~~aW~EIdL~al~~N~~~ir~~l~-~~~ki~AVVKAnAYGhG~~~va~~l~~~G~~~faVA~~~E 101 (404)
T PRK13340 23 LSLTDLSANMPRPIVANAWLEISRGALDFNIKKFKRRLA-ANSKVCAVMKADAYGHGIEGVMPTIIENNVPCIAIASNEE 101 (404)
T ss_pred CCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCC-CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHH
T ss_conf 355654310025555888999979999999999998569-9998999991110207699999999987999999949999
Q ss_pred HHHHHHCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCC-
Q ss_conf 8652212578431244477542012444420687233332202467687741133442158998723778674433322-
Q gi|254780371|r 86 LRRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKIST- 164 (431)
Q Consensus 86 l~~al~~G~~~~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~t- 164 (431)
....+++|++..-+++.++ +++++..++++++ ..++-|.++++.+.+.+++.+++.+|-|-+| |
T Consensus 102 Ai~LR~~gi~~pIlvl~~~--~~~~~~~~~~~~l-~~~I~s~~~l~~l~~~a~~~~~~~~vHlkiD------------Tt 166 (404)
T PRK13340 102 ARRVRELGFTGPLLRVRSA--EPAEIEQALRYRL-EELIGDDEQAKLLANIAKKNGKPIDIHLALN------------SG 166 (404)
T ss_pred HHHHHHCCCCCCEEEEECC--CHHHHHHHHHCCC-CEEECCHHHHHHHHHHHHHHCCCEEEEEEEC------------CC
T ss_conf 9999965999997999188--9899999997699-2599979999999999997199547999981------------68
Q ss_pred CCCCCCCCCCCCCCHHHHHH--HHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH---CCCCCCCEE---EE
Q ss_conf 33444568871111345777--64156322002335564156442048999999998876531---026665268---80
Q gi|254780371|r 165 GKKEDKFGIPIHQIHSLYAY--ASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLR---SNGHNIQHI---DV 236 (431)
Q Consensus 165 g~~~sKFGi~~~~~~~~~~~--~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~---~~g~~~~~l---di 236 (431)
|. +|.|+.+++...+.+. +...+++++.|+-.|..+- .+.+ ....++...++.+.+. ..+.....+ |=
T Consensus 167 GM--~RlG~~~~~~~~~~~~~~i~~~~~l~v~Gi~SHfa~A-D~~~-~~~q~~~F~~~~~~l~~~~~~~~~~~~~H~aNS 242 (404)
T PRK13340 167 GM--GRNGLDPSTFRGAWEAVRIATLPSLGIVGIMTHFPNE-DAGE-VRWKLARFDQATQGLIGEAGLKREKITLHVANS 242 (404)
T ss_pred CC--CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCC-CCCC-HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 86--6679881028999999999608997778998204889-9971-599999999999867887526788653998374
Q ss_pred CCCCCCC-CCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEECCCCCEEEEEEEEECCCC-------CC--------C
Q ss_conf 6873000-266545531145655565421024530344101112036632588876403468-------97--------4
Q gi|254780371|r 237 GGGLGIA-YHSDHRPPSSSDYASLIHQYFGNLQCKIILEPGRFLVADVGILVTKVISIKKSA-------DK--------T 300 (431)
Q Consensus 237 GGGf~i~-y~~~~~~~~~~~~~~~i~~~~~~~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~-------~~--------~ 300 (431)
+|=+-.| ++.|-..+.+.-|+. .|...=..++..+-++|..+|+-. |. +
T Consensus 243 agil~~p~~~~D~VRpGi~LYG~---------------~P~~~~Lkpvmsl~a~I~~ir~v~~G~~VgYG~t~~a~~~~~ 307 (404)
T PRK13340 243 YATLNVPEAHLDMVRPGGVLYGD---------------SPANTPYKRIMTFKSRIASLNTLPKGSTVGYDRTFTLERDSR 307 (404)
T ss_pred HHHHCCCHHHCCCCCCCCEEECC---------------CCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEE
T ss_conf 88760933106712677056688---------------988778785489998877888707998314465402478748
Q ss_pred CEEECCCCCCCCCCHHHCCCCCCCCCCCCCC-CCCEEEEEEEEEECCCCCEEEEEE-ECCCCCCCCEEEEECC
Q ss_conf 2200553000110011102465322223467-776158999810005666656210-0566888889999679
Q gi|254780371|r 301 FVILDVAMNDFMRPTLYDAYHEINYIVNPAG-DRLHIHADIVGPICETGDFIALNR-KIALPRPGDLLYIEKT 371 (431)
Q Consensus 301 ~~~vD~g~~~~~~p~~~~~~~~i~~~~~~~~-~~~~~~~~i~G~~C~~~D~l~~~~-~lp~l~~GD~l~i~~~ 371 (431)
.+++..|..+-. +- .+.+... --..+.+-|+|..|+ |.+.-+. .+|..++||.+.+...
T Consensus 308 iAtvpiGYADG~---------~R-~lsn~g~VlI~G~~~pivGrI~M--D~~mVDvt~~~~v~~GD~V~L~G~ 368 (404)
T PRK13340 308 LANLPVGYADGY---------PR-HAPNGGPVLINGQRAPVVGRVSM--NTLMVDVTDCPNVGPGDEVVLFGK 368 (404)
T ss_pred EEEEEEECCCCC---------CC-CCCCCCEEEECCEEEEEEEEEEC--CEEEEECCCCCCCCCCCEEEEECC
T ss_conf 999721122452---------41-14798089999999125618804--348998889988999999999789
No 38
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=99.69 E-value=5.1e-13 Score=108.54 Aligned_cols=342 Identities=17% Similarity=0.162 Sum_probs=209.1
Q ss_pred CCCCHHHHHHHCCCC----EEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCC----CHHHHHHHHHCCC-CEEEECHH
Q ss_conf 784299999974997----89977999999999999861447978999641079----9999999997399-28986899
Q gi|254780371|r 14 ENVSLEKLAHVVQTP----FYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANS----NQAVIKTLAHLGS-GLDIVSEG 84 (431)
Q Consensus 14 ~~~~l~~La~~~gTP----~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~----~~~il~~l~~~G~-g~dv~S~~ 84 (431)
....++++.+.+..+ ..-+|++.|++|++.+|+.++ +++++.--||||- ...|.+.+.+.|+ .|-|++..
T Consensus 445 r~~~~e~i~~~l~~~~h~T~lEIdL~Ai~~N~~~~r~~l~-p~tkimaVVKAdAYGhGa~evAk~l~~~gvd~~aVA~~~ 523 (824)
T PRK11930 445 RKFQFEQISERLELKVHETILEINLDAIVHNLNYYRSKLK-PETKMMCMVKAFAYGAGSYEIAKTLQEHRVDYLAVAVAD 523 (824)
T ss_pred CCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHCC-CCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEHH
T ss_conf 4566899999996455885899988999999999997479-997699999634466349999999998499999992599
Q ss_pred HHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCC-EEEEEEEECCCCCCCCCCCC
Q ss_conf 98652212578431244477542012444420687233332202467687741133442-15899872377867443332
Q gi|254780371|r 85 ELRRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKK-APIAFRVNPDINANTHKKIS 163 (431)
Q Consensus 85 El~~al~~G~~~~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~-~~I~lRinp~~~~~~~~~~~ 163 (431)
|-...+++|+...=+++ || ..+++..+++++. ...|-|+++++.+.+.+.+.+.+ .+|-|.| +
T Consensus 524 Ea~~LR~~Gi~~pIlvl-~~--~~~~~~~~~~~~l-~~~v~s~~~l~~l~~~~~~~~~~~~~vHlki------------D 587 (824)
T PRK11930 524 EGSELRKAGITLPIMVM-NP--ELTSFKTIIDYKL-EPEVYSFHLLDALIKEAEKKGLTNFPIHIKI------------D 587 (824)
T ss_pred HHHHHHHCCCCCCEEEE-CC--CHHHHHHHHHHCC-CCEECCHHHHHHHHHHHHHCCCCCCEEEEEE------------C
T ss_conf 99999974999987993-48--6677999998089-1107879999999999997299974089997------------5
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCC-CCCHHH-HHHHHHHHHHHHHHHCCCCCCCE---EEECC
Q ss_conf 23344456887111134577764156322002335564156-442048-99999999887653102666526---88068
Q gi|254780371|r 164 TGKKEDKFGIPIHQIHSLYAYASTLPGVKISGVDMHIGSQI-DQIESF-HKAFKLLRDLTQQLRSNGHNIQH---IDVGG 238 (431)
Q Consensus 164 tg~~~sKFGi~~~~~~~~~~~~~~~~~l~l~GlH~H~GS~~-~~~~~~-~~~~~~~~~~~~~l~~~g~~~~~---ldiGG 238 (431)
||. +|.|+.++++.++++.++..+++++.|+-.|..+-- .+.+.| .+-++.-.++.+.+++.+....+ -|=.|
T Consensus 588 TGM--~RlGf~~~e~~~l~~~l~~~~~l~~~gi~SHfa~aD~~~~~~~t~~Q~~~F~~~~~~l~~~~~~~~~~H~aNSag 665 (824)
T PRK11930 588 TGM--HRLGFEPEDIPELIERLKKQSAVIVRSVFSHLAGSDDPQHDDFTRQQIELFDKASEELQSALNYKPLRHILNTSG 665 (824)
T ss_pred CCC--CCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHH
T ss_conf 999--978599899999999998289985536674588889999857999999999999999987168876278607898
Q ss_pred CCCCC-CCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEECCCCCEEEEEEEEECCCC-------CCCCEEECCCCCC
Q ss_conf 73000-266545531145655565421024530344101112036632588876403468-------9742200553000
Q gi|254780371|r 239 GLGIA-YHSDHRPPSSSDYASLIHQYFGNLQCKIILEPGRFLVADVGILVTKVISIKKSA-------DKTFVILDVAMND 310 (431)
Q Consensus 239 Gf~i~-y~~~~~~~~~~~~~~~i~~~~~~~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~-------~~~~~~vD~g~~~ 310 (431)
=+-.| ++.|-..+.+--|+-. .. + ...=.-++..+-++|..+|+-. |.+|..- -.+..
T Consensus 666 i~~~p~~~~DmVR~Gi~LYG~~-----p~-~-------~~~~Lkpv~sl~s~I~~ik~v~~Ge~VgYg~t~~a~-~~~~I 731 (824)
T PRK11930 666 IERFPGAQYDMVRLGIGLYGVS-----AS-G-------NQIKLRNVSTLKTTILQIRDIPKGDTVGYSRKGRVE-KPSRI 731 (824)
T ss_pred HHCCCCCCCCEEEECCEEECCC-----CC-C-------CCCCCEEEEEEEEEEEEEEEECCCCCCCCCCCEECC-CCCEE
T ss_conf 8659844698685283516869-----88-8-------777966608999999999983856986799955828-99689
Q ss_pred CCCCHHHCCCCCCCCCCCCCCC--CCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCHHH-HHHCCCCCCCC
Q ss_conf 1100111024653222234677--76158999810005666656210056688888999967970233-34027788986
Q gi|254780371|r 311 FMRPTLYDAYHEINYIVNPAGD--RLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGA-VQSGTYNSRLL 387 (431)
Q Consensus 311 ~~~p~~~~~~~~i~~~~~~~~~--~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~-s~~s~fn~~p~ 387 (431)
..-|.-|.--++- .+.+..+. -..+.+-++|..| +|.+.-+..--+.++||.+++..-- .+. .++...+..|
T Consensus 732 AtipiGYADG~~R-~lsn~~g~Vli~G~~~pivGrIc--MD~~mvDvt~i~~~~GDeV~l~G~~-i~~~elA~~~~TI~- 806 (824)
T PRK11930 732 ATIPIGYADGLNR-HLGNGVGYVLVNGKKAPIVGNIC--MDMCMIDVTDIHANEGDKVIIFGEE-LPVTELADALNTIP- 806 (824)
T ss_pred EEEEECCCCCCCC-CCCCCCCEEEECCEEEEEEEEEE--CCEEEEECCCCCCCCCCEEEEECCC-CCHHHHHHHHCCCH-
T ss_conf 9995231027662-25799838999999922564873--3569998889989999999998999-99999999859910-
Q ss_pred CEEEEEE
Q ss_conf 6599998
Q gi|254780371|r 388 IPEIMVN 394 (431)
Q Consensus 388 p~~v~v~ 394 (431)
=||+-.
T Consensus 807 -YEilt~ 812 (824)
T PRK11930 807 -YEILTS 812 (824)
T ss_pred -HEEECC
T ss_conf -123237
No 39
>COG3616 Predicted amino acid aldolase or racemase [Amino acid transport and metabolism]
Probab=99.68 E-value=4.5e-14 Score=115.71 Aligned_cols=323 Identities=17% Similarity=0.179 Sum_probs=200.3
Q ss_pred HHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCC
Q ss_conf 9999974997899779999999999998614479789996410799999999997399-289868999865221257843
Q gi|254780371|r 19 EKLAHVVQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGS-GLDIVSEGELRRALAAPVPAE 97 (431)
Q Consensus 19 ~~La~~~gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~-g~dv~S~~El~~al~~G~~~~ 97 (431)
......+.||+.++|++.++.|+.++++..+..+.++...+||.+++.+.+...+.|. |+-|+...|.+....+|++
T Consensus 10 ~~~~~~l~tP~~liD~dr~~~Ni~r~qa~~~~~g~~lrph~KT~k~~~la~~ql~aGa~git~~tl~eae~~a~aGi~-- 87 (368)
T COG3616 10 ELAAADLDTPAALIDLDRLDGNIDRMQARADDHGVRLRPHVKTHKCPELARIQLDAGAWGITCATLGEAEVFADAGID-- 87 (368)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHCCCCEEEEECHHHHHHHHCCCCC--
T ss_conf 133147799643112887763699999860544836501234335879999998537731576106788998715865--
Q ss_pred CEEECCCCCCCHHHHHHHH--CCC--CCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1244477542012444420--687--233332202467687741133442158998723778674433322334445688
Q gi|254780371|r 98 RIVFSGVGKTIDEIDLALQ--SGI--YCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGI 173 (431)
Q Consensus 98 ~Ii~~g~~k~~~~l~~ai~--~gv--~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi 173 (431)
+|+|..|.-....++...+ ... ..+.+||.+.++.+.+.+.+.++..+|+|-++ .+. .|.|+
T Consensus 88 dIl~a~p~~~~~~~~~L~~l~~~~~~~~~~iDs~~~~~~l~~~~~~~~~pl~v~iE~D----~G~----------~R~Gv 153 (368)
T COG3616 88 DILLAYPLPGRAALAALAELLADPPRISVLIDSVEQLDALAALARDAGKPLRVLIEID----SGL----------HRSGV 153 (368)
T ss_pred CEEEECCCCCHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEC----CCC----------CCCCC
T ss_conf 2587158871668999998518998429995788999999999875499746999957----888----------86675
Q ss_pred CCCCC-HHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf 71111-34577764156322002335564156442048999999998876531026665268806873000266545531
Q gi|254780371|r 174 PIHQI-HSLYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPS 252 (431)
Q Consensus 174 ~~~~~-~~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~ 252 (431)
...+. ..+.+.++..++|++.|+.+|-|.-...........+ ......+...|...+++.-|| -|.-.
T Consensus 154 ~t~~~~~~La~~~~~~~~l~~~Gv~~y~gh~~~~~~~~~~~~~--~~a~~~~~~~g~~~~~vt~gg-tp~~~-------- 222 (368)
T COG3616 154 RTPEVAEALAAEIAAAPGLRLAGVMTYPGHSYGPGSEVAAAER--VHAAALLGAVGRAAPVLTSGG-TPTAE-------- 222 (368)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHH--HHHHHHHCCCCCCCCEEECCC-CCCHH--------
T ss_conf 7868999999765204660785553036634677653333335--568997405687663453278-87322--------
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCEECCC--------------CCEEEEEEEEECCCCCCCCEEECCCCCCCCCCH--H
Q ss_conf 145655565421024530344101112036--------------632588876403468974220055300011001--1
Q gi|254780371|r 253 SSDYASLIHQYFGNLQCKIILEPGRFLVAD--------------VGILVTKVISIKKSADKTFVILDVAMNDFMRPT--L 316 (431)
Q Consensus 253 ~~~~~~~i~~~~~~~~~~l~~EPGR~lva~--------------ag~ll~~V~~vK~~~~~~~~~vD~g~~~~~~p~--~ 316 (431)
.. ....-.....||-|+..+ ++..++.|++.- ...++++|+|.-.+.+.. .
T Consensus 223 --~~--------~~~~~~~e~r~G~Y~~~D~~~~~~g~~s~~d~Al~v~atvis~p---~~~~aivdaG~k~ls~D~~~~ 289 (368)
T COG3616 223 --LV--------AGLSSTTELRAGNYVFNDLVQVAFGIPSLSDGALTVAATVISHP---TPGRAIVDAGSKALSRDRPAA 289 (368)
T ss_pred --HH--------CCCCCCEEECCCCEEEHHHHHHHHCCCCCCCCEEEEEEEEEECC---CCCEEECCCCCCCCCCCCCCC
T ss_conf --21--------35775136516733421366666267751013047767999648---886564057861000567767
Q ss_pred HCCCCCCCCCCCCCCCCCEEEEEEEEE----ECCCCCEEEEEE-ECCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEE
Q ss_conf 102465322223467776158999810----005666656210-056688888999967970233340277889866599
Q gi|254780371|r 317 YDAYHEINYIVNPAGDRLHIHADIVGP----ICETGDFIALNR-KIALPRPGDLLYIEKTGAYGAVQSGTYNSRLLIPEI 391 (431)
Q Consensus 317 ~~~~~~i~~~~~~~~~~~~~~~~i~G~----~C~~~D~l~~~~-~lp~l~~GD~l~i~~~GAY~~s~~s~fn~~p~p~~v 391 (431)
...+.. .. +... ..+.++ +-+..=++...- .-..+++||++.|...=+ |. .+|.++ ...
T Consensus 290 ~~~~~~---~~---g~~~---~~~~~~e~~~ln~ehg~~~~~~~~~~~l~vGd~v~i~PnH~-c~----t~~~f~--~~~ 353 (368)
T COG3616 290 RTGFGL---GG---GYEA---ARVAAPEVMRLNEEHGTLSVQDPPADLLKVGDRVRLRPNHS-CA----TFNLFD--DLH 353 (368)
T ss_pred CCCEEE---CC---CCHH---HCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEECCCH-HH----HHHHCC--EEE
T ss_conf 664244---06---8543---20463223561301269953677666688877699607962-46----666347--389
Q ss_pred EEECCE
Q ss_conf 998896
Q gi|254780371|r 392 MVNGSQ 397 (431)
Q Consensus 392 ~v~~g~ 397 (431)
+++++.
T Consensus 354 v~~g~~ 359 (368)
T COG3616 354 VVRGGG 359 (368)
T ss_pred EEECCC
T ss_conf 985791
No 40
>cd06825 PLPDE_III_VanT Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, VanT and similar proteins. This subfamily is composed of Enterococcus gallinarum VanT and similar proteins. VanT is a membrane-bound serine racemase (EC 5.1.1.18) that is essential for vancomycin resistance in Enterococcus gallinarum. It converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. The C-terminal region of this protein contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, which is homologous to the fold type III PLP-dependent enzyme, bacterial alanine racemase (AR). AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. On the basis of this similarity, it has been suggested that dimer formation of VanT is required for its catalytic activity, and that it catalyzes the racemization of serine in a mechanistically similar manner to that of alanine by
Probab=99.66 E-value=2.4e-13 Score=110.81 Aligned_cols=311 Identities=18% Similarity=0.175 Sum_probs=185.0
Q ss_pred EEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCC----CHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCCEEECCCC
Q ss_conf 977999999999999861447978999641079----9999999997399-28986899986522125784312444775
Q gi|254780371|r 31 CYSTTAIEKNYLTFSNAFDGMDTMVCYALKANS----NQAVIKTLAHLGS-GLDIVSEGELRRALAAPVPAERIVFSGVG 105 (431)
Q Consensus 31 V~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~----~~~il~~l~~~G~-g~dv~S~~El~~al~~G~~~~~Ii~~g~~ 105 (431)
=+|++.|++|++.+++.++ .+.+++-.+|||- ...|.+.+.+.|+ +|-|++..|....+++|++..=+++ |.
T Consensus 5 eIdl~al~~N~~~i~~~~~-~~~~i~aVVKAnAYGhG~~~va~~l~~~Gv~~f~Va~~~EA~~LR~~g~~~~Ilvl-~~- 81 (368)
T cd06825 5 EIDLSALEHNVKEIKRLLP-STCKLMAVVKANAYGHGDVEVARVLEQIGIDFFAVATIDEGIRLREAGIKGEILIL-GY- 81 (368)
T ss_pred EEEHHHHHHHHHHHHHHCC-CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEE-CC-
T ss_conf 9869999999999997479-99879999956426688999999999869899999199999999962999998997-69-
Q ss_pred CCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 42012444420687233332202467687741133442158998723778674433322334445688711113457776
Q gi|254780371|r 106 KTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYA 185 (431)
Q Consensus 106 k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~ 185 (431)
-++++++.++++++ ..++-|+++++.+.+. +...+|-| +++||. +|+|++++++..+.+..
T Consensus 82 ~~~~~~~~~~~~~l-~~~i~s~~~~~~l~~~----~~~~~vhL------------kiDTGM--~RlG~~~~e~~~~~~~~ 142 (368)
T cd06825 82 TPPVRAKELKKYSL-TQTLISEAYAEELSKY----AVNIKVHL------------KVDTGM--HRLGESPEDIDSILAIY 142 (368)
T ss_pred CCHHHHHHHHHCCC-EEEECCHHHHHHHHHC----CCCCEEEE------------EECCCC--CCCCCCHHHHHHHHHHH
T ss_conf 98788999997599-8999969999999727----99860799------------970799--86788878999999998
Q ss_pred HHCCCCCHHHHHHHHHHC-CCCCHH---HHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 415632200233556415-644204---8999999998876531026665268806873000266545531145655565
Q gi|254780371|r 186 STLPGVKISGVDMHIGSQ-IDQIES---FHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIH 261 (431)
Q Consensus 186 ~~~~~l~l~GlH~H~GS~-~~~~~~---~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~ 261 (431)
..+++++.|+-.|..+- ..+.+. -..-++.-.++...+++.|++.....+..--++-..+ +..+|+-..+-.+-
T Consensus 143 -~~~~l~~~gi~SH~a~AD~~~~~~~~~t~~Q~~~F~~~~~~l~~~~~~~~~~h~aNSagil~~p-~~~~d~vRpGi~LY 220 (368)
T cd06825 143 -RLKNLKVSGIFSHLCVSDSLDEDDIAFTKHQIACFDQVLADLKARGIEVGKIHIQSSYGILNYP-DLKYDYVRPGILLY 220 (368)
T ss_pred -HCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHCCC-CCCCCEECCCEEEE
T ss_conf -6799954789853002566898335899999999999999998748984548742717876395-02488126734626
Q ss_pred HHHCCCCCEEEEEECCEECCCCCEEEEEEEEECCCC-------CCCCEEECCCCCCCCCCHHHCCCCCCCCCCCCCCC--
Q ss_conf 421024530344101112036632588876403468-------97422005530001100111024653222234677--
Q gi|254780371|r 262 QYFGNLQCKIILEPGRFLVADVGILVTKVISIKKSA-------DKTFVILDVAMNDFMRPTLYDAYHEINYIVNPAGD-- 332 (431)
Q Consensus 262 ~~~~~~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~-------~~~~~~vD~g~~~~~~p~~~~~~~~i~~~~~~~~~-- 332 (431)
-......... +...=.-++..+-++|..+|+-. |.+|.. +..+..-+-|.-|.--++- .+.+....
T Consensus 221 G~~~~~~~~~---~~~~~LkPvmsl~a~I~~ir~v~~G~~VgYg~~~~a-~~~~~ia~v~iGYaDG~~R-~lsn~~~~V~ 295 (368)
T cd06825 221 GVLSDPNDPT---KLGLDLRPVLSLKAKVILVRKVAKGEAVGYGRLFVA-SRTTRIATVSIGYADGYPR-SLSNQKAYVL 295 (368)
T ss_pred CCCCCCCCCC---CCCCCCCEEEEEEEEEEEEEECCCCCEECCCCCCCC-CCCCEEEEEEEECCCCCCH-HHCCCCCEEE
T ss_conf 7888854344---456685146999999545420699784536863346-7872799981141156342-3337974899
Q ss_pred CCEEEEEEEEEECCCCCEEEEEE-ECCCCCCCCEEEEECCC
Q ss_conf 76158999810005666656210-05668888899996797
Q gi|254780371|r 333 RLHIHADIVGPICETGDFIALNR-KIALPRPGDLLYIEKTG 372 (431)
Q Consensus 333 ~~~~~~~i~G~~C~~~D~l~~~~-~lp~l~~GD~l~i~~~G 372 (431)
-..+.+-|+|..|+ |.+.-+. .+|+.++||.+.+....
T Consensus 296 i~G~~~pivGrV~M--D~~~vDvt~~~~v~~GD~V~l~G~~ 334 (368)
T cd06825 296 INGKRAPIIGNICM--DQLMVDVTDIPEVKEGDTATLIGQD 334 (368)
T ss_pred ECCEEEEEECEECC--CEEEEECCCCCCCCCCCEEEEECCC
T ss_conf 99999577488714--5489989899889999999998289
No 41
>cd06814 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 3. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.66 E-value=3.5e-13 Score=109.65 Aligned_cols=338 Identities=12% Similarity=0.126 Sum_probs=185.2
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHH-CCC-CEEEECHHHHHHHHHCCCCCCCEE
Q ss_conf 974997899779999999999998614479789996410799999999997-399-289868999865221257843124
Q gi|254780371|r 23 HVVQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAH-LGS-GLDIVSEGELRRALAAPVPAERIV 100 (431)
Q Consensus 23 ~~~gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~-~G~-g~dv~S~~El~~al~~G~~~~~Ii 100 (431)
+..+||+.|+|+|.+++|++++.+...+ +..++-+.|+.+++.+++.+.+ .|. |+-|.+..|+......+. ..+|+
T Consensus 5 a~i~tP~lvvDldal~~Ni~~m~~~~~~-~~~lRph~Ks~ks~~ll~~~~~~~g~~g~~~~~~~e~~~~~~~~~-~~DiL 82 (379)
T cd06814 5 AGIGEPTLLLDKDRLDHNIDLLREHLAG-SLAYRIVAKSLPSPPLLRHIMKRAGTRRLMVFHQPFLNAVAKAFP-DADIL 82 (379)
T ss_pred CCCCCCEEEEEHHHHHHHHHHHHHHHCC-CCCCCCEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHHHHHHCC-CCCEE
T ss_conf 0789976996189999999999997568-997353504057999999998745987578821999999997476-66489
Q ss_pred ECCCCCCCHHHH---HH----HHCCC-CCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 447754201244---44----20687-23333220246768774113344215899872377867443332233444568
Q gi|254780371|r 101 FSGVGKTIDEID---LA----LQSGI-YCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFG 172 (431)
Q Consensus 101 ~~g~~k~~~~l~---~a----i~~gv-~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFG 172 (431)
+..|......++ .. ...+. .++.|||.+.++.+.+.+++.+...+|+|-||. |.| |-|
T Consensus 83 l~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~VD~~~~l~~l~~~a~~~g~~l~V~ieiDv----G~~----------R~G 148 (379)
T cd06814 83 LGKPMPVAAAARFYRQLTGSAFRPARQLQWLIDTPERLAQYRALARSLGLTLRINLELDV----GLH----------RGG 148 (379)
T ss_pred ECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCEEEEEEECC----CCC----------CCC
T ss_conf 648774078999998733100266561799983899999999999875981689999678----887----------388
Q ss_pred CC-CCCCHHHHHHHHHCCCCCHHHHHHHHHH--CCCCCH----HHHHHHHHHHHHHHHHH---CCCCCCCEEEECCCCCC
Q ss_conf 87-1111345777641563220023355641--564420----48999999998876531---02666526880687300
Q gi|254780371|r 173 IP-IHQIHSLYAYASTLPGVKISGVDMHIGS--QIDQIE----SFHKAFKLLRDLTQQLR---SNGHNIQHIDVGGGLGI 242 (431)
Q Consensus 173 i~-~~~~~~~~~~~~~~~~l~l~GlH~H~GS--~~~~~~----~~~~~~~~~~~~~~~l~---~~g~~~~~ldiGGGf~i 242 (431)
+. .+++.++++.+...++|++.||+.+-|. +..+.. ....+++....+.+..+ ..+....++| |||-|.
T Consensus 149 v~~~~~a~~la~~I~~~~~l~l~Glm~Yeghi~~~~~~~~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~vn-gGGTgT 227 (379)
T cd06814 149 FADPQTLPKALTAIDAPPRLRFSGLMGYEPHVAKLPGLISPAKARAAAMARYQAFVALARAHLGAHTQKLTLN-TGGSPT 227 (379)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE-ECCCCC
T ss_conf 7897999999999973899779898516465655987031899999999999999999987540367665694-268743
Q ss_pred CCCCCCCCCCHHHHHH--H-HHHHHCCCCCEEEEEECCEECCCCCEEEEEEEEECCCCCCCCEEECCCCCCCCC---C--
Q ss_conf 0266545531145655--5-654210245303441011120366325888764034689742200553000110---0--
Q gi|254780371|r 243 AYHSDHRPPSSSDYAS--L-IHQYFGNLQCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMNDFMR---P-- 314 (431)
Q Consensus 243 ~y~~~~~~~~~~~~~~--~-i~~~~~~~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~vD~g~~~~~~---p-- 314 (431)
|........+.+... . +++. +++ .+.-+-..+|..+.++|+. +..... +..++|...+.. |
T Consensus 228 -~~~~~~~~~~tEv~aGS~~f~p~--dfd-----~~~~~~~~pA~~ia~~Vv~--~~~~~~-~~~~~g~~~~~~~~~~~~ 296 (379)
T cd06814 228 -YRLYEGDGPVNEVSAGSALVKPT--DFD-----LPALEDHQPALFIATPVLK--VLDALE-IPGLPGLGRLLPLWNPNR 296 (379)
T ss_pred -CEEECCCCCCEEECCCCCEECCC--CCC-----CCCCCCCCCCHHHHCEEEE--CCCCCC-CCCCCCCCEECCCCCCCC
T ss_conf -00114799732887773572401--014-----4344455620544100032--168772-123542221014568875
Q ss_pred ----HHHCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCEE
Q ss_conf ----1110246532222346777615899981000566665621005668888899996797023334027788986659
Q gi|254780371|r 315 ----TLYDAYHEINYIVNPAGDRLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQSGTYNSRLLIPE 390 (431)
Q Consensus 315 ----~~~~~~~~i~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~s~~s~fn~~p~p~~ 390 (431)
..|+.+.... +..+.+- ...-+.|... .--.+.- ..-..++.||.+.|-.+=|= .+ .|.+. ..
T Consensus 297 ~~~~~i~Gg~w~a~-p~~P~Gl---~~~~~~g~se-~q~~l~~-~~~~~L~vGD~V~lrp~ha~-~~----~~~f~--~l 363 (379)
T cd06814 297 RRAYFIYGGNWKAD-PVSPAGL---RYNGLYGRSS-NQEMLNG-SASSQLKVDDYVFLRPTQSE-AV----LLQFG--DI 363 (379)
T ss_pred CCCEEECCCCCCCC-CCCCCCC---CCCCCCCCCC-CCCEEEC-CCCCCCCCCCEEEEECCCCC-HH----HHHCC--EE
T ss_conf 65403117864566-5478887---7675031466-6411545-77667999999999557533-66----67248--79
Q ss_pred EEEECCEEEEE
Q ss_conf 99988968999
Q gi|254780371|r 391 IMVNGSQFHII 401 (431)
Q Consensus 391 v~v~~g~~~~i 401 (431)
++|++|+..-.
T Consensus 364 ~vvrgg~vv~~ 374 (379)
T cd06814 364 LVVRGGQIIDR 374 (379)
T ss_pred EEEECCEEEEE
T ss_conf 99999999999
No 42
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=99.64 E-value=1.7e-13 Score=111.73 Aligned_cols=324 Identities=17% Similarity=0.187 Sum_probs=211.3
Q ss_pred EEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCC-CHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCCEEECCCCC
Q ss_conf 89977999999999999861447978999641079-9999999997399-289868999865221257843124447754
Q gi|254780371|r 29 FYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANS-NQAVIKTLAHLGS-GLDIVSEGELRRALAAPVPAERIVFSGVGK 106 (431)
Q Consensus 29 ~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~-~~~il~~l~~~G~-g~dv~S~~El~~al~~G~~~~~Ii~~g~~k 106 (431)
.||+|+|.+++|.+.+.+...+.+.++||..|-.- ||.+++.+.+.|. |+-++-.-|.+...+.|++-..+=- =..-
T Consensus 30 tYViDlD~v~~NAr~l~~~A~~~gi~Ly~MtKQ~GRNP~l~~~l~~~G~~g~VaVD~kEA~~l~~~gl~vghvGH-LVQi 108 (382)
T cd06811 30 TYVIDLDQIEENARLLAETAEKYGIELYFMTKQFGRNPFLARALLEAGIPGAVAVDFKEARALHEAGLPLGHVGH-LVQI 108 (382)
T ss_pred CEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCCCCCCC-CCCC
T ss_conf 689758999999999999999739689999610589989999999739985689609999999985998344157-1368
Q ss_pred CCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 20124444206872333322024676877411334421589987237786744333223344456887111134577764
Q gi|254780371|r 107 TIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYAS 186 (431)
Q Consensus 107 ~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~~ 186 (431)
+...+...++.+-..|+|=|++..+.+.+.|.+++...+|++||- +....+..|.. =|++.+++.++++.++
T Consensus 109 P~~~v~~iv~~~PeviTVfS~ekA~eis~aA~~~g~~Q~illrV~-----~~~D~~Y~GQe---gGf~l~eL~~v~~~i~ 180 (382)
T cd06811 109 PRHQVPAVLAMRPEVITVYSLEKAREISDAAVELGRVQDVLLRVY-----GDEDTLYPGQE---GGFPLEELPAVLAAIK 180 (382)
T ss_pred CHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHCCCCCEEEEEE-----CCCCCCCCCCC---CCEEHHHHHHHHHHHH
T ss_conf 576899999749978999209999999999998197332699996-----48984637753---7754899999999997
Q ss_pred HCCCCCHHHHHHHHHHCCCCCH----HHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 1563220023355641564420----489999999988765310266652688068730002665455311456555654
Q gi|254780371|r 187 TLPGVKISGVDMHIGSQIDQIE----SFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQ 262 (431)
Q Consensus 187 ~~~~l~l~GlH~H~GS~~~~~~----~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~ 262 (431)
.++|+++.|+..+. +...|.+ .-...+..+.+..+.+++.|+....||..+--. ..-...|++
T Consensus 181 ~l~gi~i~GvT~FP-c~L~d~~~~~~~pT~N~~Tl~~A~~~L~~~G~~~~qvN~PSaTs------------~~tlp~La~ 247 (382)
T cd06811 181 ALPGIRIAGLTSFP-CFLYDEEQGDIAPTPNLFTLLKAKELLEKRGIEILQLNAPSATS------------CATLPLLAE 247 (382)
T ss_pred HCCCCEEEEEECEE-EEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCH------------HHHHHHHHH
T ss_conf 28996796643200-68774777951158529999999999997598627950685114------------765999998
Q ss_pred HHCCCCCEEEEEECCEECC-------------CCCEEEEEEEEECCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCCCCC
Q ss_conf 2102453034410111203-------------663258887640346897422005530001100111024653222234
Q gi|254780371|r 263 YFGNLQCKIILEPGRFLVA-------------DVGILVTKVISIKKSADKTFVILDVAMNDFMRPTLYDAYHEINYIVNP 329 (431)
Q Consensus 263 ~~~~~~~~l~~EPGR~lva-------------~ag~ll~~V~~vK~~~~~~~~~vD~g~~~~~~p~~~~~~~~i~~~~~~ 329 (431)
. +. --.|||.+|.+ .|..+|++|-..-. ++-|+. -||+. .|+-+.+ -+...
T Consensus 248 ~----G~-Th~EPGHaLTGTtP~ha~~d~pE~pA~vYvSEISH~~~--g~sY~y-GGG~Y--rR~hl~~------ALV~~ 311 (382)
T cd06811 248 Y----GV-THGEPGHALTGTTPLHAVGDQPEKPAMVYVSEVSHTFG--GHSYCY-GGGFY--RRSHLKN------ALVGT 311 (382)
T ss_pred H----CC-CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECC--CCEEEE-CCCCC--CCCCCCC------EEECC
T ss_conf 4----88-66788741247885545677887613999986457428--955875-88665--4666333------25516
Q ss_pred CCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHCC-CCCCCCCEEEEEE---CCEEEEEE
Q ss_conf 6777615899981000566665621005668888899996797023334027-7889866599998---89689998
Q gi|254780371|r 330 AGDRLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQSGT-YNSRLLIPEIMVN---GSQFHIIR 402 (431)
Q Consensus 330 ~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~s~~s~-fn~~p~p~~v~v~---~g~~~~ir 402 (431)
..+.. ....+--+.-++.|+...- .-+...+||.+++. .-++ |-. |.-+++|+ .|+++++-
T Consensus 312 ~~~~~-~~~~v~~~~~~sIDYy~~l-~~~~~~vGdtVi~~--------FRtQiFVT--RS~ValV~Gi~sG~P~l~G 376 (382)
T cd06811 312 DPDDA-SAHRAELLDPENIDYYGTL-DGPEFAVGDTVIMA--------FRTQIFVT--RSDVALVSGIASGKPRLVG 376 (382)
T ss_pred CCCCH-HHEECCCCCCCCEEEEEEC-CCCCCCCCCEEEEE--------EEEEEEEE--ECCEEEEECCCCCCCEEEE
T ss_conf 82322-1132357997762067752-89878988808998--------62048897--1206998135579964888
No 43
>PRK03646 dadX alanine racemase; Reviewed
Probab=99.63 E-value=3.2e-13 Score=109.91 Aligned_cols=298 Identities=15% Similarity=0.142 Sum_probs=181.3
Q ss_pred CE-EEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCC----CHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCCEEE
Q ss_conf 78-9977999999999999861447978999641079----9999999997399-2898689998652212578431244
Q gi|254780371|r 28 PF-YCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANS----NQAVIKTLAHLGS-GLDIVSEGELRRALAAPVPAERIVF 101 (431)
Q Consensus 28 P~-yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~----~~~il~~l~~~G~-g~dv~S~~El~~al~~G~~~~~Ii~ 101 (431)
|. -.+|++.|++|++.+++..+ +.+++-.+|||- ...+.+.+ +|+ +|-|++..|....+++|+...-+++
T Consensus 3 p~~a~IdL~al~~N~~~lr~~~~--~~~i~aVVKAnAYGhG~~~va~~l--~g~~~faVa~~~Ea~~LR~~gi~~pIlvl 78 (355)
T PRK03646 3 PIQASLDLQALKQNLSIVREAAP--GARVWSVVKANAYGHGIERIWSAL--GATDGFAVLNLEEAITLRERGWKGPILML 78 (355)
T ss_pred CEEEEEEHHHHHHHHHHHHHHCC--CCEEEEEEEECCCCCCHHHHHHHH--HCCCEEEEEEHHHHHHHHHCCCCCCEEEE
T ss_conf 78999969999999999985589--986999995344648799999998--38997999469999999964999977975
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 47754201244442068723333220246768774113344215899872377867443332233444568871111345
Q gi|254780371|r 102 SGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSL 181 (431)
Q Consensus 102 ~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~ 181 (431)
+|. ..+++++.++++++ +.++.|..+++.+.+. ..+++.+|-|.+ +||. +|+|+.++++.++
T Consensus 79 ~g~-~~~~~~~~~~~~~l-~~~i~s~~~l~~l~~~--~~~~~~~vhlki------------DTGM--~RlG~~~~e~~~~ 140 (355)
T PRK03646 79 EGF-FHAQELELYDQHRL-TTCVHSNWQLKALQNA--RLKAPLDIYLKV------------NSGM--NRLGFQPERVQTV 140 (355)
T ss_pred CCC-CCHHHHHHHHHCCC-EEEECCHHHHHHHHHH--CCCCCCEEEEEE------------ECCC--CCCCCCHHHHHHH
T ss_conf 388-99899999998198-6875819999999863--517994699999------------0798--7789885789999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCC-CCCCCCCCCHHHHHHHH
Q ss_conf 77764156322002335564156442048999999998876531026665268806873000-26654553114565556
Q gi|254780371|r 182 YAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIA-YHSDHRPPSSSDYASLI 260 (431)
Q Consensus 182 ~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~-y~~~~~~~~~~~~~~~i 260 (431)
++.++..+++++.|+-.|..+- .+++.....++...++.+.+ ......-|=+|-+..| ++.+-..+.+.-|+-.
T Consensus 141 ~~~l~~~~~l~~~gi~SHfa~a-d~~~~~~~Q~~~F~~~~~~l---~~~~~lanSa~~l~~p~~~~d~vR~Gi~lYG~~- 215 (355)
T PRK03646 141 WQQLRAMGNVGEMTLMSHFARA-DHPDGISEAMARIEQAAEGL---ECERSLSNSAATLWHPQAHSDWVRPGIILYGAS- 215 (355)
T ss_pred HHHHHHCCCCCEEEEEEEECCC-CCCHHHHHHHHHHHHHHHCC---CCCEEEECCHHHHCCCCCCCCEEEEEEEEECCC-
T ss_conf 9999848998758999862457-88067999999999997267---866545287999789856797463237835688-
Q ss_pred HHHHCCCCCEEEEEECCE-ECCCCCEEEEEEEEECCCC-------CC--------CCEEECCCCCCCCCCHHHCCCCCCC
Q ss_conf 542102453034410111-2036632588876403468-------97--------4220055300011001110246532
Q gi|254780371|r 261 HQYFGNLQCKIILEPGRF-LVADVGILVTKVISIKKSA-------DK--------TFVILDVAMNDFMRPTLYDAYHEIN 324 (431)
Q Consensus 261 ~~~~~~~~~~l~~EPGR~-lva~ag~ll~~V~~vK~~~-------~~--------~~~~vD~g~~~~~~p~~~~~~~~i~ 324 (431)
|.-..+|... -.-++..+-++|..+|+-. |. +.+++..|..+-. +-
T Consensus 216 --------p~~~~~~~~~~~LkPvmsl~a~i~~vk~l~~G~~VgYg~t~~a~~~~~ia~vpiGYaDG~---------~R- 277 (355)
T PRK03646 216 --------PSGQWRDIANTGLRPVMTLSSEIIGVQTLPAGERVGYGGRYTARREQRIGIVAAGYADGY---------PR- 277 (355)
T ss_pred --------CCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCC---------CC-
T ss_conf --------664444442347722089999999999816899546787524247569999840413563---------43-
Q ss_pred CCCCCCC-CCCEEEEEEEEEECCCCCEEEEEE-ECCCCCCCCEEEEECCC
Q ss_conf 2223467-776158999810005666656210-05668888899996797
Q gi|254780371|r 325 YIVNPAG-DRLHIHADIVGPICETGDFIALNR-KIALPRPGDLLYIEKTG 372 (431)
Q Consensus 325 ~~~~~~~-~~~~~~~~i~G~~C~~~D~l~~~~-~lp~l~~GD~l~i~~~G 372 (431)
.+.+... --..+.+-++|..|+ |.+.-+. .+|+.+.||.+.+..-.
T Consensus 278 ~~sn~~~V~i~G~~~pivGrI~M--D~~~vDvt~~~~~~~Gd~V~l~G~~ 325 (355)
T PRK03646 278 HAPTGTPVLVDGVRTRTVGTVSM--DMLAVDLTPCPQAGIGTPVELWGKE 325 (355)
T ss_pred CCCCCCEEEECCEEEEEECEECC--CEEEEECCCCCCCCCCCEEEEECCC
T ss_conf 35799789999999547677645--5689988899878999999998999
No 44
>cd06826 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme, Alanine Racemase 2. This subfamily is composed of bacterial alanine racemases (EC 5.1.1.1) with similarity to Yersinia pestis and Vibrio cholerae alanine racemase (AR) 2. ARs catalyze the interconversion between L- and D-alanine, an essential component of the peptidoglycan layer of bacterial cell walls. These proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=99.62 E-value=2.2e-12 Score=104.20 Aligned_cols=295 Identities=19% Similarity=0.226 Sum_probs=178.6
Q ss_pred EEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCC----CHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCCEEECCCC
Q ss_conf 977999999999999861447978999641079----9999999997399-28986899986522125784312444775
Q gi|254780371|r 31 CYSTTAIEKNYLTFSNAFDGMDTMVCYALKANS----NQAVIKTLAHLGS-GLDIVSEGELRRALAAPVPAERIVFSGVG 105 (431)
Q Consensus 31 V~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~----~~~il~~l~~~G~-g~dv~S~~El~~al~~G~~~~~Ii~~g~~ 105 (431)
=+|++.|++|++.+++.++ .+.+++--+|||- ...+.+.+.+.|+ +|-|++..|....+++|++..-+++.+
T Consensus 5 eIdl~al~~N~~~ir~~~~-~~~ki~aVVKAnAYGhG~~~va~~l~~~gv~~faVa~~~EA~~LR~~g~~~~Il~l~~-- 81 (365)
T cd06826 5 EISTGAFENNIKLLKKLLG-GNTKLCAVMKADAYGHGIALVMPSIIAQNIPCVGITSNEEARVVREAGFTGKILRVRT-- 81 (365)
T ss_pred EEEHHHHHHHHHHHHHHCC-CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCCEEEECC--
T ss_conf 9809999999999996389-9997999995620228789999999987999999687999999996599998799868--
Q ss_pred CCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHH-
Q ss_conf 42012444420687233332202467687741133442158998723778674433322-3344456887111134577-
Q gi|254780371|r 106 KTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKIST-GKKEDKFGIPIHQIHSLYA- 183 (431)
Q Consensus 106 k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~t-g~~~sKFGi~~~~~~~~~~- 183 (431)
-++++++.++++++ ..++-|+++++.+.+.+++.+++.+|-|-+| | |. +|+|+..++...+.+
T Consensus 82 ~~~~e~~~~~~~~l-~~~i~s~~~~~~l~~~~~~~~~~~~vhlkiD------------T~GM--~RlG~~~~~~~~~~~~ 146 (365)
T cd06826 82 ATPSEIEDALAYNI-EELIGSLDQAEQIDSLAKRHGKTLPVHLALN------------SGGM--SRNGLELSTAQGKEDA 146 (365)
T ss_pred CCHHHHHHHHHCCC-CCEECCHHHHHHHHHHHHHCCCCCEEEEEEC------------CCCC--CCCCCCCCHHHHHHHH
T ss_conf 89799999997068-6099819999999999987099833899972------------6997--7578673407899999
Q ss_pred -HHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-HCCCCCCC--EE---EECCCCCCC-CCCCCCCCCHHH
Q ss_conf -76415632200233556415644204899999999887653-10266652--68---806873000-266545531145
Q gi|254780371|r 184 -YASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQL-RSNGHNIQ--HI---DVGGGLGIA-YHSDHRPPSSSD 255 (431)
Q Consensus 184 -~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l-~~~g~~~~--~l---diGGGf~i~-y~~~~~~~~~~~ 255 (431)
.+.+.+++++.|+..|..+- |........+...++...+ ...+.... .+ |=+|-+..| ++.|-..+.+.-
T Consensus 147 ~~~~~~~~l~i~Gi~SH~a~a--d~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~H~anS~~~l~~~~~~~d~vR~Gi~l 224 (365)
T cd06826 147 VAIATLPNLKIVGIMTHFPVE--DEDDVRAKLARFNEDTAWLISNAKLKREKITLHAANSFATLNVPEAHLDMVRPGGIL 224 (365)
T ss_pred HHHHHCCCCCEEEEEEECCCC--CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHCCCCCCCCCCCCCEEE
T ss_conf 999738998579998334788--987409999999999999998626777756188614367655941147845578463
Q ss_pred HHHHHHHHHCCCCCEEEEEECCEECCCCCEEEEEEEEECCCC---------------CCCCEEECCCCCCCCCCHHHCCC
Q ss_conf 655565421024530344101112036632588876403468---------------97422005530001100111024
Q gi|254780371|r 256 YASLIHQYFGNLQCKIILEPGRFLVADVGILVTKVISIKKSA---------------DKTFVILDVAMNDFMRPTLYDAY 320 (431)
Q Consensus 256 ~~~~i~~~~~~~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~---------------~~~~~~vD~g~~~~~~p~~~~~~ 320 (431)
|+-. .. .+ =..++..+-++|..+|.-. +.+.+++..|..+-..-.+.+.
T Consensus 225 YG~~--------p~----~~---~lkpv~sl~s~I~~ir~l~~Ge~VGYg~~~~a~~~~~ia~v~iGYaDG~~r~~sn~- 288 (365)
T cd06826 225 YGDT--------PP----SP---EYKRIMSFKSRVASLNTYPKGSTVGYDRTFTLTRDSLLANIPVGYSDGYRRSFSNK- 288 (365)
T ss_pred ECCC--------CC----CC---CCCCEEEEEEEEEEEEECCCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCC-
T ss_conf 7869--------77----77---77834999999966478389997666862543898289997043325755002799-
Q ss_pred CCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEE-ECCCCCCCCEEEEECC
Q ss_conf 65322223467776158999810005666656210-0566888889999679
Q gi|254780371|r 321 HEINYIVNPAGDRLHIHADIVGPICETGDFIALNR-KIALPRPGDLLYIEKT 371 (431)
Q Consensus 321 ~~i~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~-~lp~l~~GD~l~i~~~ 371 (431)
..++. ..+.+-|.|..|+ |.+.-+. .+|..++||.+.+..-
T Consensus 289 --~~V~i------~G~~~pivGrV~M--D~~~vDvt~~~~v~~Gd~v~l~G~ 330 (365)
T cd06826 289 --AHVLI------NGQRVPVVGKVSM--NTVMVDVTDIPGVKAGDEVVLFGK 330 (365)
T ss_pred --CEEEE------CCEEEEEECEEEC--CEEEEECCCCCCCCCCCEEEEECC
T ss_conf --68999------9999357177722--268995678878999999999747
No 45
>cd06827 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=99.60 E-value=9.7e-13 Score=106.65 Aligned_cols=299 Identities=17% Similarity=0.185 Sum_probs=176.4
Q ss_pred EEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCC----CHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCEEECCCC
Q ss_conf 9977999999999999861447978999641079----999999999739928986899986522125784312444775
Q gi|254780371|r 30 YCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANS----NQAVIKTLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGVG 105 (431)
Q Consensus 30 yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~----~~~il~~l~~~G~g~dv~S~~El~~al~~G~~~~~Ii~~g~~ 105 (431)
-.+|++.|++|++.+++..+ +.++.--+|||- ...+.+.+.+. .+|-|++..|....+++|++..-++++|+
T Consensus 4 ~eIdl~al~~N~~~ir~~~~--~~~i~aVVKAnAYGhG~~~va~~l~~~-~~faVa~~~Ea~~LR~~g~~~~IlvL~g~- 79 (354)
T cd06827 4 ATIDLAALRHNLRLVRELAP--NSKILAVVKANAYGHGLVRVAKALADA-DGFAVACIEEALALREAGITKPILLLEGF- 79 (354)
T ss_pred EEEEHHHHHHHHHHHHHHCC--CCEEEEEEEECCCCCCHHHHHHHHHCC-CEEEEEEHHHHHHHHHCCCCCCEEEEECC-
T ss_conf 99979999999999997689--983999998463648699999998569-97999489999999973999866999378-
Q ss_pred CCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 42012444420687233332202467687741133442158998723778674433322334445688711113457776
Q gi|254780371|r 106 KTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYA 185 (431)
Q Consensus 106 k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~ 185 (431)
.+++++..++++++ +.++-|.++++.+.+.. .+++.+|-| +++||. +|+|++++|+.++++.+
T Consensus 80 ~~~~~~~~~~~~~l-~~~i~s~~~l~~l~~~~--~~~~~~vhl------------kiDTGM--~RlG~~~~e~~~~~~~l 142 (354)
T cd06827 80 FSADELPLAAEYNL-WTVVHSEEQLEWLEQAA--LSKPLNVWL------------KLDSGM--HRLGFSPEEYAAAYQRL 142 (354)
T ss_pred CCHHHHHHHHHCCC-EEEECCHHHHHHHHHHC--CCCCCEEEE------------EECCCC--CCCCCCHHHHHHHHHHH
T ss_conf 99899999998499-89999899999998628--489954999------------975788--85789989999999999
Q ss_pred HHCCCCCHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCC-CCCCCCCCHHHHHHHHHHH
Q ss_conf 4156322002335564156-4420489999999988765310266652688068730002-6654553114565556542
Q gi|254780371|r 186 STLPGVKISGVDMHIGSQI-DQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAY-HSDHRPPSSSDYASLIHQY 263 (431)
Q Consensus 186 ~~~~~l~l~GlH~H~GS~~-~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y-~~~~~~~~~~~~~~~i~~~ 263 (431)
+..+++++.|+-.|..+-- .+......-++.-.++.+.+. .....-|=+|=|-.|- +.+-..+.+.-|+-.
T Consensus 143 ~~~~~l~~~gi~SHfa~AD~~~~~~t~~Q~~~F~~~~~~~~---~~~h~aNSa~~l~~~~~~~d~VR~Gi~lYG~~---- 215 (354)
T cd06827 143 KASPNVASIVLMTHFACADEPDSPGTAKQLAIFEQATAGLP---GPRSLANSAAILAWPEAHGDWVRPGIMLYGAS---- 215 (354)
T ss_pred HHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCC---CCEEEECCHHHHCCCCCCCCEECCCEEEECCC----
T ss_conf 85899856899840245788887899999999999971488---66667178877459522477234674615688----
Q ss_pred HCCCCCEEEEEECCEECCCCCEEEEEEEEECCCC-------CC--------CCEEECCCCCCCCCCHHHCCCCCCCCCCC
Q ss_conf 1024530344101112036632588876403468-------97--------42200553000110011102465322223
Q gi|254780371|r 264 FGNLQCKIILEPGRFLVADVGILVTKVISIKKSA-------DK--------TFVILDVAMNDFMRPTLYDAYHEINYIVN 328 (431)
Q Consensus 264 ~~~~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~-------~~--------~~~~vD~g~~~~~~p~~~~~~~~i~~~~~ 328 (431)
|.--..+-..-.-++..+-++|..+|+-. |. +.+++..|..+-..-.+.+ ...++.
T Consensus 216 -----P~~~~~~~~~~Lkpv~sl~a~v~~vk~v~~G~~VgYg~t~~a~~~~~iA~vpiGYaDG~~R~~s~---~~~V~i- 286 (354)
T cd06827 216 -----PFADKSGADLGLKPVMTLSSEIIAVRELKAGESVGYGATWTAPRPMRIGVVAIGYGDGYPRHAPS---GTPVLV- 286 (354)
T ss_pred -----CCCCCCCCCCCCEEEEEEEEEEEEEEECCCCCCEECCCCEECCCCCEEEEEEEECCCCCCCCCCC---CCEEEE-
T ss_conf -----77666654558546589999845789769999231697411366735999830411463531579---978999-
Q ss_pred CCCCCCEEEEEEEEEECCCCCEEEEEE-ECCCCCCCCEEEEECCC
Q ss_conf 467776158999810005666656210-05668888899996797
Q gi|254780371|r 329 PAGDRLHIHADIVGPICETGDFIALNR-KIALPRPGDLLYIEKTG 372 (431)
Q Consensus 329 ~~~~~~~~~~~i~G~~C~~~D~l~~~~-~lp~l~~GD~l~i~~~G 372 (431)
..+.+-|.|..|+ |.+.-+. .+|+.++||.+.+..-+
T Consensus 287 -----~G~~~pivGrI~M--D~~~vDvt~~~~~~~GD~V~l~G~~ 324 (354)
T cd06827 287 -----NGQRTPLVGRVSM--DMLTVDLTDLPEAKVGDPVELWGKG 324 (354)
T ss_pred -----CCEEEEEECEEEC--CEEEEECCCCCCCCCCCEEEEECCC
T ss_conf -----9999776567505--3589988899778999999996899
No 46
>COG0787 Alr Alanine racemase [Cell envelope biogenesis, outer membrane]
Probab=99.60 E-value=2.7e-12 Score=103.64 Aligned_cols=304 Identities=18% Similarity=0.179 Sum_probs=187.0
Q ss_pred EEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCC----CHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCCEEECCC
Q ss_conf 9977999999999999861447978999641079----9999999997399-2898689998652212578431244477
Q gi|254780371|r 30 YCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANS----NQAVIKTLAHLGS-GLDIVSEGELRRALAAPVPAERIVFSGV 104 (431)
Q Consensus 30 yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~----~~~il~~l~~~G~-g~dv~S~~El~~al~~G~~~~~Ii~~g~ 104 (431)
-.+|++.|++|++.+++..+. .+++--+|||- ...|.+.+.+.|+ +|-|++..|....+++|+....|..-+.
T Consensus 7 ~~Idl~Al~~N~~~i~~~~~~--~~~~AVVKAnAYGhG~~~va~~l~~~g~~~f~VA~l~EAi~LR~~gi~~~~IlvL~g 84 (360)
T COG0787 7 AEIDLGALRHNLRALRELAGP--AKLMAVVKANAYGHGAVRVAKALLDAGADGFGVASLEEAIELREAGITGAPILVLEG 84 (360)
T ss_pred EEEEHHHHHHHHHHHHHHCCC--CEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCCCEEEECC
T ss_conf 998689999999999974788--579999965436778999999999859998998629999999971888997899737
Q ss_pred CCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 54201244442068723333220246768774113344215899872377867443332233444568871111345777
Q gi|254780371|r 105 GKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAY 184 (431)
Q Consensus 105 ~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~ 184 (431)
..+++++..+.++++ +.+|.|+++++.+...+.+. ++.+|-|-+ +||. +|.|+.+++....+..
T Consensus 85 ~~~~~~~~~~~~~~l-~~~v~s~~ql~~l~~~~~~~-~~l~vhLki------------DTGM--~RlG~~~~~~~~~~~~ 148 (360)
T COG0787 85 FFPAEELELAAAYNL-TPVVNSLEQLEALKNAALKN-KPLKVHLKI------------DTGM--NRLGLRPEEAVALAID 148 (360)
T ss_pred CCCHHHHHHHHHCCC-EEEECCHHHHHHHHHHHHCC-CCEEEEEEE------------CCCC--CCCCCCHHHHHHHHHH
T ss_conf 588356789998697-38889999999999755106-962799997------------7898--7579884899999998
Q ss_pred HHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCC----CCCCCCCCCCHHHHHHHH
Q ss_conf 6415632200233556415644204899999999887653102666526880687300----026654553114565556
Q gi|254780371|r 185 ASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGI----AYHSDHRPPSSSDYASLI 260 (431)
Q Consensus 185 ~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i----~y~~~~~~~~~~~~~~~i 260 (431)
....+++.+.|+-.|..+- ..++.- .....+..|. +...+.+.+.+-+...-++ .|+.+...+.+.-|+-.=
T Consensus 149 ~~~~~~~~~~gi~SHfa~A-De~~~~-~~~~Q~~~F~--~~~~~~~~~~~h~aNSa~~~~~~~~~~d~vRpGi~lYG~~P 224 (360)
T COG0787 149 LIALKNLDLEGIFSHFACA-DEPEDP-YTLKQLERFN--LAKQGLPGELSHLANSAGLLLGPDYHFDMVRPGIALYGLSP 224 (360)
T ss_pred HHHCCCCCEEEEECCCCCC-CCCCCH-HHHHHHHHHH--HHHCCCCCCEEEEECCHHHHCCCCCCCCEEECCEEEECCCC
T ss_conf 7632487559997156778-888982-7899999999--98646987537885558770686422514640013226885
Q ss_pred HHHHCCCCCEEEEEECCEECCCCCEEEEEEEEECCCC-------CCCCEEECCCCCCCCCCHHHCCCCCCCCCCCCCC-C
Q ss_conf 5421024530344101112036632588876403468-------9742200553000110011102465322223467-7
Q gi|254780371|r 261 HQYFGNLQCKIILEPGRFLVADVGILVTKVISIKKSA-------DKTFVILDVAMNDFMRPTLYDAYHEINYIVNPAG-D 332 (431)
Q Consensus 261 ~~~~~~~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~-------~~~~~~vD~g~~~~~~p~~~~~~~~i~~~~~~~~-~ 332 (431)
..... .=.-++.++-++|+.+|+-. |.+|..-.-+ ..-+-|.-|.--++- .+.+... -
T Consensus 225 ~~~~~------------~~lkpvmtl~a~ii~vr~v~~Ge~VgYG~t~~a~~~t-~iavv~iGYaDG~pR-~~~~~~~Vl 290 (360)
T COG0787 225 SGGLD------------NGLKPVMTLKARIIQVRTVPAGETVGYGATFTAERDT-RIAVVAIGYADGYPR-ALSNGTPVL 290 (360)
T ss_pred CCCCC------------CCCCCEEEEEEEEEEEEEECCCCCCCCCCEEECCCCC-EEEEEECCCCCCCHH-HCCCCCEEE
T ss_conf 65667------------7853107999988899985799952477079825882-689986334577420-168997799
Q ss_pred CCEEEEEEEEEECCCCCEEEEEE-ECCCCCCCCEEEEECC
Q ss_conf 76158999810005666656210-0566888889999679
Q gi|254780371|r 333 RLHIHADIVGPICETGDFIALNR-KIALPRPGDLLYIEKT 371 (431)
Q Consensus 333 ~~~~~~~i~G~~C~~~D~l~~~~-~lp~l~~GD~l~i~~~ 371 (431)
-..+.+-++|..|+ |.+.-+. .+|..++||.+.+.+-
T Consensus 291 i~G~r~pivGrVsM--D~~~Vdl~~~~~~~~Gd~V~L~G~ 328 (360)
T COG0787 291 INGKRVPIVGRVSM--DMIMVDLTDLPQVKVGDEVELFGE 328 (360)
T ss_pred ECCEEEEEEEEEEC--EEEEEECCCCCCCCCCCEEEEECC
T ss_conf 99998157638842--069998899877899999999899
No 47
>pfam01168 Ala_racemase_N Alanine racemase, N-terminal domain.
Probab=99.53 E-value=8.9e-13 Score=106.92 Aligned_cols=183 Identities=21% Similarity=0.364 Sum_probs=137.6
Q ss_pred EEHHHHHHHHHHHHHHCCCCCCEEEEEEECC-CCHH---HHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCCEEECCCCC
Q ss_conf 7799999999999986144797899964107-9999---9999997399-289868999865221257843124447754
Q gi|254780371|r 32 YSTTAIEKNYLTFSNAFDGMDTMVCYALKAN-SNQA---VIKTLAHLGS-GLDIVSEGELRRALAAPVPAERIVFSGVGK 106 (431)
Q Consensus 32 ~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN-~~~~---il~~l~~~G~-g~dv~S~~El~~al~~G~~~~~Ii~~g~~k 106 (431)
+|++.+++|++.+++..+. +.+++.-+|+| +... +++.+ +.|+ +|-|++..|....++.|++. +|.+-++.
T Consensus 1 Idl~~l~~Ni~~i~~~~~~-~~~l~aVvK~nayG~g~~~i~~~~-~~g~~~f~v~~~~Ea~~lr~~~~~~-~Il~l~~~- 76 (216)
T pfam01168 1 IDLDALRHNIRALRERAGR-PVKLMAVVKANAYGHGAVRVARAL-AAGADGFGVATLQEALELREAGITA-PILVLGFF- 76 (216)
T ss_pred CCHHHHHHHHHHHHHHCCC-CCEEEEEECCCCCCCCHHHHHHHH-HHCCCCEEEEEHHHHHHHHHHCCCC-CEEEECCC-
T ss_conf 9779999999999985699-998999977777786699999999-8089855980099999999818987-07773689-
Q ss_pred CCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 20124444206872333322024676877411334421589987237786744333223344456887111134577764
Q gi|254780371|r 107 TIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYAS 186 (431)
Q Consensus 107 ~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~~ 186 (431)
+++++..++++++ ...|||+++++.+.+.+.+.+++.+|.|-|| ||. +|+|++++++.++++.++
T Consensus 77 ~~~~~~~~~~~~~-~~~v~s~~~l~~l~~~~~~~~~~~~v~l~vd------------tGm--~R~G~~~~~~~~~~~~i~ 141 (216)
T pfam01168 77 PPEELALAAEYDL-IPTVDSLEQAEALSAAAAKLGRPLRVHLKVD------------TGM--GRLGFTPEELPALAEALA 141 (216)
T ss_pred CHHHHHHHHHCCC-EEEECCHHHHHHHHHHHHHCCCCEEEEEEEE------------ECC--CCCCCCHHHHHHHHHHHH
T ss_conf 9699999998597-8997889999999999998599808999997------------478--768879999999999985
Q ss_pred HCCCCCHHHHHHHHHHCCCCCHHHHH-HHHHHHHHHHHHHCCCCCCCEEEECC
Q ss_conf 15632200233556415644204899-99999988765310266652688068
Q gi|254780371|r 187 TLPGVKISGVDMHIGSQIDQIESFHK-AFKLLRDLTQQLRSNGHNIQHIDVGG 238 (431)
Q Consensus 187 ~~~~l~l~GlH~H~GS~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~ldiGG 238 (431)
.+++++.|+..|.++. .+.+...+ .++...++.+.++..+ ..+.+|.
T Consensus 142 -~~~l~~~Gi~tH~~~~-d~~~~~~~~q~~~f~~~~~~l~~~~---~~~s~~n 189 (216)
T pfam01168 142 -LPGLRLEGLMTHFACA-DEPDATNRAQLARFRELADALEAAG---PVLSLGN 189 (216)
T ss_pred -CCCCCEEEEEEECCCC-CCCCHHHHHHHHHHHHHHHHHHCCC---CEEEHHC
T ss_conf -5999678999505887-8975899999999999999865689---9985116
No 48
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism]
Probab=99.37 E-value=5.2e-11 Score=94.89 Aligned_cols=305 Identities=15% Similarity=0.199 Sum_probs=192.4
Q ss_pred CCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCC-CHHHHHHHHHCCCCEEE-ECHHHHHHHHHCCCCCCCEEECCC
Q ss_conf 9789977999999999999861447978999641079-99999999973992898-689998652212578431244477
Q gi|254780371|r 27 TPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANS-NQAVIKTLAHLGSGLDI-VSEGELRRALAAPVPAERIVFSGV 104 (431)
Q Consensus 27 TP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~-~~~il~~l~~~G~g~dv-~S~~El~~al~~G~~~~~Ii~~g~ 104 (431)
-|-.++|++.|++|.+.+++.+...+.++++-.|... +|.+.+.+.+.|.+.-+ +-..|+.....+|++..-.+.-.|
T Consensus 3 ~p~l~Idl~~ieeNak~~~~~a~~~gI~~~~vtK~~~g~~~iae~l~~~Gi~~iaesr~~n~~~lr~~g~~~~~~Llr~P 82 (353)
T COG3457 3 NPGLIIDLDKIEENAKVLQETAARYGIELYGVTKQFGGDPFIAEALLALGIEGIAESRIDNAIRLREAGCTIPGHLLRSP 82 (353)
T ss_pred CCCEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCCCCEEEECC
T ss_conf 87178768998876899999998739779998752058818999999658543430227889999975999675476265
Q ss_pred CCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 54201244442068723333220246768774113344215899872377867443332233444568871111345777
Q gi|254780371|r 105 GKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAY 184 (431)
Q Consensus 105 ~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~ 184 (431)
++ ++++.-+++ +.++.+-+++-++.+.+.|.+.|+..+|+++|..+- . .+..+|.-.+++.+.++.
T Consensus 83 ~~--sei~~vv~~-~Dvs~~sel~~arqlse~A~~~Gk~h~VlLmVd~~D-------l----reG~~~~~~~~l~~~V~e 148 (353)
T COG3457 83 CM--SEIEDVVRK-VDVSTVSELDTARQLSEAAVRMGKVHDVLLMVDYGD-------L----REGQWGFLIEDLEETVEE 148 (353)
T ss_pred CH--HHHHHHHHH-CCEEEEECHHHHHHHHHHHHHHCCCEEEEEEEECCC-------C----CCCCHHHHHHHHHHHHHH
T ss_conf 28--899999873-576897258999999999998275216999998356-------6----674024478888999999
Q ss_pred HHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC-CCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 641563220023355641564420489999999988765310-2666526880687300026654553114565556542
Q gi|254780371|r 185 ASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRS-NGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQY 263 (431)
Q Consensus 185 ~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~~ 263 (431)
+..++|++++||-+|.++. .+..+-.+.+..+.++..++.. .|+.+++||-|.--. + .....-.+-+ |++
T Consensus 149 I~~lkGi~~vGlgTnF~Cf-g~v~PTp~n~~~ll~~~~~lE~~~Gi~l~~vsagnats--~----~~L~~~~~~~-inh- 219 (353)
T COG3457 149 IQQLKGIHLVGLGTNFPCF-GDVLPTPENLESLLQGKKKLEASSGIQLKQVSAGNATS--L----TLLPMGSLPG-INH- 219 (353)
T ss_pred HHCCCCCEEEEEECCCCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCC--H----HHHHCCCCCC-CCC-
T ss_conf 9669983598631166545-67678840489999999998773295058812798620--3----3201455225-555-
Q ss_pred HCCCCCEEEEEECCEE--------------CCCCCEEEEEEEEECCCCCCCCE--------EECCCCCCCCCCHHHCCCC
Q ss_conf 1024530344101112--------------03663258887640346897422--------0055300011001110246
Q gi|254780371|r 264 FGNLQCKIILEPGRFL--------------VADVGILVTKVISIKKSADKTFV--------ILDVAMNDFMRPTLYDAYH 321 (431)
Q Consensus 264 ~~~~~~~l~~EPGR~l--------------va~ag~ll~~V~~vK~~~~~~~~--------~vD~g~~~~~~p~~~~~~~ 321 (431)
+|||.++ --+|..+.+.+..+|.....++. .+|+|+-...-.++ + +.
T Consensus 220 ---------lriG~al~~g~~~~n~~~~~~e~da~~lesEIie~k~k~s~~ige~f~~~~~f~d~g~~~rAi~ai-g-~~ 288 (353)
T COG3457 220 ---------LRIGEALTGGVTPTNQYIDWLEQDAMLLESEIIEVKDKPSYPIGEGFYRRSGFVDAGIRLRAIAAI-G-EQ 288 (353)
T ss_pred ---------CCCCCEEECCCCCCHHCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHH-H-HH
T ss_conf ---------444521453610201102300352210112455215788612054213566654420347887776-5-52
Q ss_pred CCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEEC-CCCCCCCEEEEECC
Q ss_conf 532222346777615899981000566665621005-66888889999679
Q gi|254780371|r 322 EINYIVNPAGDRLHIHADIVGPICETGDFIALNRKI-ALPRPGDLLYIEKT 371 (431)
Q Consensus 322 ~i~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~l-p~l~~GD~l~i~~~ 371 (431)
.+ ...+ -.+-.+..++.|-+ +|-+.-+..- -.+++||.+.|...
T Consensus 289 dv-~~~~--~spiD~~i~ilgas---SDhvvld~~~q~~v~vgDvv~fr~~ 333 (353)
T COG3457 289 DV-DVVN--LSPIDYGIDILGAS---SDHVVLDFRDQIFVTVGDVVRFRLI 333 (353)
T ss_pred CC-CCCC--CCCHHHHHHHHCCC---CCCEEEEECCCCCCEEEEEEEEEEC
T ss_conf 47-7678--86276654453246---7718999605643224028999842
No 49
>TIGR00492 alr alanine racemase; InterPro: IPR000821 Alanine racemase catalyses the pyridoxal-dependent conversion of L-alanine into D-alanine, a key component of bacterial peptidoglycan . In Escherichia coli and Salmonella typhimurium, there are two alanine racemase isoforms, alr is a biosynthetic form required for cell wall formation; and dadB functions in L-alanine catabolism. By contrast with dadB and alr, both of which are monomeric enzymes, the alanine racemase of Bacillaceae are homodimers. In Pseudomonas putida, a broad-specificity amino acid racemase is structurally and functionally related to alanine racemase. The 3D-structure of the dimeric alanine racemase from Bacillus stearothermophilus has been determined to a resolution of 1.9 A . Each monomer comprises two domains, with an eight-stranded alpha/beta barrel at the N-terminus, and a C-terminal beta-strand domain. In the dimer, the mouth of the alpha/beta barrel of one monomer faces the second domain of the other monomer. The pyridoxal 5'-phosphate (PLP) cofactor lies in and above the barrel mouth and is covalently linked via an aldimine linkage to Lys39. Several other residues are involved in anchoring the PLP, for example, Arg219 forms a hydrogen bond with the pyridine nitrogen of the cofactor, which is assumed to influence electron delocalisation in PLP-alanine intermediates; Arg136 donates a hydrogen bond to the phenolic oxygen of PLP, and may be involved in substrate binding and stabilisation of intermediates; and Tyr265' is postulated to be a 2 proton donor to the carbanion intermediate .; GO: 0008784 alanine racemase activity, 0006522 alanine metabolic process.
Probab=99.35 E-value=1.5e-09 Score=85.01 Aligned_cols=317 Identities=15% Similarity=0.168 Sum_probs=207.4
Q ss_pred EEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCC----CHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCCEEECC
Q ss_conf 89977999999999999861447978999641079----9999999997399-289868999865221257843124447
Q gi|254780371|r 29 FYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANS----NQAVIKTLAHLGS-GLDIVSEGELRRALAAPVPAERIVFSG 103 (431)
Q Consensus 29 ~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~----~~~il~~l~~~G~-g~dv~S~~El~~al~~G~~~~~Ii~~g 103 (431)
.-.+|.+.|++|++.+|+..+ .+.++.=-||||- ...+.+++.+.|+ .|-|++..|....++.|... .|+.=+
T Consensus 5 ~~~id~~ALk~Nl~~~k~~~~-~~~~~~AVVKANAYGHG~~~~a~~~~~~Gad~lavA~LeEAi~LR~~G~~~-PIL~Lg 82 (383)
T TIGR00492 5 WVEIDLAALKHNLSAIKKQIG-PKSKIMAVVKANAYGHGLIEVAKTLLQAGADYLAVATLEEAIELRKAGITA-PILLLG 82 (383)
T ss_pred EEEECHHHHHHHHHHHHHHCC-CCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCC-CEEEEE
T ss_conf 899926789999999997468-875699998148426018999999986589664000246779988547887-578850
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCC--CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC-CCHH
Q ss_conf 75420124444206872333322024676877411334--42158998723778674433322334445688711-1134
Q gi|254780371|r 104 VGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLG--KKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIH-QIHS 180 (431)
Q Consensus 104 ~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~--~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~-~~~~ 180 (431)
-..++++++.+.++.+. -.+=|.++|+.+.+.+.+.. ++.+|-|.| +||. .|.|+.++ +...
T Consensus 83 ~~~~~~~~~~~~~~~l~-~~v~s~Eql~~~~~~~lk~~sa~~l~vhlK~------------DTGM--~RLG~~~~f~~~~ 147 (383)
T TIGR00492 83 GFFSAEDLKILAAWDLT-TTVHSVEQLKALEEALLKEPSAKRLKVHLKI------------DTGM--NRLGVKPDFEEAL 147 (383)
T ss_pred CCCCHHHHHHHHHCCCE-EEEECHHHHHHHHHHHHHCCCCCEEEEEEEE------------CCCC--CCCCCCCCHHHHH
T ss_conf 47998899999861863-8980889999999984104478747899862------------3888--6478886578999
Q ss_pred HHHHHHHCCCCC-HHHHHHHHHHCCCCCH--HHHHHHHHHHHHHHHHHCCCCC----CCEEEECCCCCCCCCCCCCCCCH
Q ss_conf 577764156322-0023355641564420--4899999999887653102666----52688068730002665455311
Q gi|254780371|r 181 LYAYASTLPGVK-ISGVDMHIGSQIDQIE--SFHKAFKLLRDLTQQLRSNGHN----IQHIDVGGGLGIAYHSDHRPPSS 253 (431)
Q Consensus 181 ~~~~~~~~~~l~-l~GlH~H~GS~~~~~~--~~~~~~~~~~~~~~~l~~~g~~----~~~ldiGGGf~i~y~~~~~~~~~ 253 (431)
.+..+++.+.+. +.||-.|.. ...+++ .....++.-..+.+.++..++. ...=|=||.+-.|-..+..-+|+
T Consensus 148 ~~~~~~~~~~~~~~~gi~sHfa-~AD~~~~~~~~~Q~~~F~~~~~~L~~~~i~~~~~~h~aNSaaiL~~~~~~enr~fd~ 226 (383)
T TIGR00492 148 FVQKLRALSKLLELEGIFSHFA-TADEPKTTTTKKQIERFLSFLEGLKQQKIELIPFRHIANSAAILSLPEGHENRLFDM 226 (383)
T ss_pred HHHHHHHCCCCCCCCCEECCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 9999983645643021121456-767722147999999999998513436864763354210178644533566640114
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCEECCCCCEEEEEEEEECCCC-CC-------CCEEECCCCCCCCCCHHHCCCCCCCC
Q ss_conf 45655565421024530344101112036632588876403468-97-------42200553000110011102465322
Q gi|254780371|r 254 SDYASLIHQYFGNLQCKIILEPGRFLVADVGILVTKVISIKKSA-DK-------TFVILDVAMNDFMRPTLYDAYHEINY 325 (431)
Q Consensus 254 ~~~~~~i~~~~~~~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~-~~-------~~~~vD~g~~~~~~p~~~~~~~~i~~ 325 (431)
=..+=.+-=.....+ +-+-=.+-.-+..+|-++++.||... |. .|.--+ -+-.-+-|.-|.--+|- .
T Consensus 227 vRpGIiLYG~~Ps~~---~~~~~~~~L~PVlsL~s~i~~vr~~k~Ger~VsYG~~~~a~~-d~~iGvva~GYaDG~pR-~ 301 (383)
T TIGR00492 227 VRPGIILYGLYPSAD---MKDGAPLGLKPVLSLKSKIIQVRTVKKGERPVSYGGTFTAEE-DTKIGVVAIGYADGYPR-A 301 (383)
T ss_pred EECCHHHHCCCCCHH---CCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCEEEECCC-CCEEEEEEECHHCCCHH-H
T ss_conf 421435321476200---145543475031267899999874058897424672486578-73689996200247521-1
Q ss_pred CCCCCC-CCCEEEEEEEEEECCCCCEEEEEEE-CCCCCCCCEEEEEC
Q ss_conf 223467-7761589998100056666562100-56688888999967
Q gi|254780371|r 326 IVNPAG-DRLHIHADIVGPICETGDFIALNRK-IALPRPGDLLYIEK 370 (431)
Q Consensus 326 ~~~~~~-~~~~~~~~i~G~~C~~~D~l~~~~~-lp~l~~GD~l~i~~ 370 (431)
+.+... --.-+.+-++|..|+ |++.=+.. -+..+.||-|++..
T Consensus 302 l~n~~~VL~~G~~~~~~G~V~M--D~~~V~L~~~~~~k~G~~Vil~G 346 (383)
T TIGR00492 302 LSNGTPVLVNGKRVPIVGRVCM--DMLMVDLGPNLQAKTGDEVILWG 346 (383)
T ss_pred CCCCCEEEECCEEEEEEEEEEE--EEEEEECCCCCCCCCCCEEEEEE
T ss_conf 5898679886746314410141--00666238888898761689974
No 50
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.
Probab=98.88 E-value=7.7e-08 Score=73.34 Aligned_cols=189 Identities=17% Similarity=0.169 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHHCCC--CCCEEEEEEECCCCHHHHHHHHHCCCC-EEEECHHHHHH-HHHC-CCCCCCEEECCCCCCC
Q ss_conf 99999999999986144--797899964107999999999973992-89868999865-2212-5784312444775420
Q gi|254780371|r 34 TTAIEKNYLTFSNAFDG--MDTMVCYALKANSNQAVIKTLAHLGSG-LDIVSEGELRR-ALAA-PVPAERIVFSGVGKTI 108 (431)
Q Consensus 34 ~~~i~~n~~~l~~a~~~--~~~~i~yAvKaN~~~~il~~l~~~G~g-~dv~S~~El~~-al~~-G~~~~~Ii~~g~~k~~ 108 (431)
.+.|+++++.-...-.+ .++++.-..|+.|...| +.+.+.|.. |-=.=..|+.. +... ..+.=+..|-|+--+.
T Consensus 6 l~~i~~~I~~a~~~~gR~~~~V~LiaVSK~~~~e~I-~~a~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsN 84 (224)
T cd06824 6 LAQVKQRIAQAAKQAGRDPSSVQLLAVSKTKPADAI-REAYAAGQRHFGENYVQEALEKIEALRDLQDIEWHFIGPIQSN 84 (224)
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHH-HHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCHH
T ss_conf 999999999999983879576599998899899999-9999869952478709999999998533789559997755201
Q ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 12444420687233332202467687741133442158998723778674433322334445688711113457776415
Q gi|254780371|r 109 DEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYASTL 188 (431)
Q Consensus 109 ~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~~~~ 188 (431)
. ++.++.+--.+=+|||+.-++.|...+.+.+++.+|+|-||. ++..+|.|+.++++.++++.+..+
T Consensus 85 K-vk~i~~~~~~IhSvDs~kla~~l~~~~~~~~~~~~vliQVN~------------s~E~~K~G~~~~e~~~~~~~i~~~ 151 (224)
T cd06824 85 K-TKLIAENFDWVHSVDRLKIAKRLNDQRPAGLPPLNVCIQVNI------------SGEDSKSGVAPEDAAELAEAISQL 151 (224)
T ss_pred H-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEEC------------CCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 6-799998521897645099999999999972998628999853------------785002698999999999999956
Q ss_pred CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 6322002335564156442048999999998876531026665268806
Q gi|254780371|r 189 PGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVG 237 (431)
Q Consensus 189 ~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiG 237 (431)
++|++.||-+ ++....|++.....++.+.+++++++..+..+..|.||
T Consensus 152 ~~l~i~GLMt-i~p~~~d~~~~r~~F~~l~~l~~~l~~~~~~~~~LSMG 199 (224)
T cd06824 152 PNLRLRGLMA-IPAPTDDEAAQRAAFKRLRQLFDQLKKQYPDLDTLSMG 199 (224)
T ss_pred CCCCEEEEEE-ECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCC
T ss_conf 9984266776-57999885789999999999999998517998957770
No 51
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=98.78 E-value=5.7e-07 Score=67.47 Aligned_cols=188 Identities=20% Similarity=0.266 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHHCCCC--CCEEEEEEECCCCHHHHHHHHHCCCC-EEEECHHHHHHHHHCCCCC--CCEEECCCCCCC
Q ss_conf 999999999999861447--97899964107999999999973992-8986899986522125784--312444775420
Q gi|254780371|r 34 TTAIEKNYLTFSNAFDGM--DTMVCYALKANSNQAVIKTLAHLGSG-LDIVSEGELRRALAAPVPA--ERIVFSGVGKTI 108 (431)
Q Consensus 34 ~~~i~~n~~~l~~a~~~~--~~~i~yAvKaN~~~~il~~l~~~G~g-~dv~S~~El~~al~~G~~~--~~Ii~~g~~k~~ 108 (431)
.+.|+++++...+...+. .+++.-..|+-+...| +.+.+.|.- |-=.=..|+..-.. -++. =+-.|-|+--+.
T Consensus 5 l~~i~~~I~~a~~~~~R~~~~V~LiaVsK~~~~e~I-~~a~~~G~~~fGENrvQE~~~K~~-~l~~~~i~wHfIG~LQsN 82 (222)
T cd00635 5 LEEVRERIAAAAERAGRDPDEVTLVAVSKTVPAEAI-REAIEAGQRDFGENRVQEALDKAE-ELPDPDIEWHFIGHLQTN 82 (222)
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHH-HHHHHCCCCCCCCCHHHHHHHHHH-HCCCCCCEEEEECCCCHH
T ss_conf 999999999999982889565189999899899999-999985996236770899998687-548888259996676236
Q ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 12444420687233332202467687741133442158998723778674433322334445688711113457776415
Q gi|254780371|r 109 DEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYASTL 188 (431)
Q Consensus 109 ~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~~~~ 188 (431)
-+..++.+=-.+=+|||+..+++|...+.+.+++.+|+|-||. ++..+|.|+.++++.++++.+..+
T Consensus 83 -Kvk~i~~~~~~IhSvDs~kla~~l~~~~~~~~~~~~vlIQVNi------------s~e~~K~G~~~~e~~~~~~~~~~~ 149 (222)
T cd00635 83 -KVKYAVRLFDLIHSVDSLKLAEELNKRAEKEGRVLDVLVQVNI------------GGEESKSGVAPEELEELLEEIAAL 149 (222)
T ss_pred -HHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEEC------------CCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf -6998750045888778899999999999972999718999815------------887555688999999999999966
Q ss_pred CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC-CCCCCEEEEC
Q ss_conf 632200233556415644204899999999887653102-6665268806
Q gi|254780371|r 189 PGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSN-GHNIQHIDVG 237 (431)
Q Consensus 189 ~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~ldiG 237 (431)
++|++.||-+ +++...+++.-...+..+.++++++... +..+..|.||
T Consensus 150 ~~l~~~GLM~-i~p~~~d~~~~~~~F~~l~~l~~~l~~~~~~~~~~LSMG 198 (222)
T cd00635 150 PNLRIRGLMT-IAPLTEDPEEVRPYFRELRELRDELGAKGGVNLKELSMG 198 (222)
T ss_pred CCCCCCEEEE-ECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCC
T ss_conf 8997510365-369999979999999999999999876459993988981
No 52
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]
Probab=98.72 E-value=1.1e-06 Score=65.46 Aligned_cols=189 Identities=19% Similarity=0.222 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHCCCC--CCEEEEEEECCCCHHHHHHHHHCCCC-EEEECHHHHHHHHHCCCCCC---CEEECCCCCC
Q ss_conf 999999999999861447--97899964107999999999973992-89868999865221257843---1244477542
Q gi|254780371|r 34 TTAIEKNYLTFSNAFDGM--DTMVCYALKANSNQAVIKTLAHLGSG-LDIVSEGELRRALAAPVPAE---RIVFSGVGKT 107 (431)
Q Consensus 34 ~~~i~~n~~~l~~a~~~~--~~~i~yAvKaN~~~~il~~l~~~G~g-~dv~S~~El~~al~~G~~~~---~Ii~~g~~k~ 107 (431)
.+.++++++.-...-.+. .+.+.-..|+-|. ..++.+.+.|+. |-=.-..|+.. ....++.. .-.|-|+--+
T Consensus 7 l~~v~~~I~~a~~~a~R~~~~V~LvAVSK~~~~-~~I~~~~~aG~r~fGENrvQe~~~-K~~~l~~~~~i~WHfIG~LQs 84 (228)
T COG0325 7 LAAVRERIAAAAERAGRNPGSVTLVAVSKTVPA-EDIREAYEAGQRHFGENRVQEALD-KIEALKDLPDIEWHFIGPLQS 84 (228)
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCH-HHHHHHHHCCCCHHCCHHHHHHHH-HHHHCCCCCCEEEEEECHHHH
T ss_conf 999999999999973899884799997677899-999999984880323318999999-999647678817999641135
Q ss_pred CHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 01244442068723333220246768774113344215899872377867443332233444568871111345777641
Q gi|254780371|r 108 IDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYAST 187 (431)
Q Consensus 108 ~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~~~ 187 (431)
.. .+.++++=..+-++|++.-...|.+.+.+.++..+|+|-|| +++..||-|++++++.+++..+++
T Consensus 85 NK-~k~v~~~~~~ihSlDr~klA~~l~kra~~~~~~l~v~iQVN------------i~~E~sK~G~~~~e~~~~~~~~~~ 151 (228)
T COG0325 85 NK-VKLVAENFDWIHSLDRLKLAKELNKRALELPKPLNVLIQVN------------ISGEESKSGVPPEELDELAQEVQE 151 (228)
T ss_pred HH-HHHHHHHCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEE------------CCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 67-99998424233330779999999989973798863899994------------388623379998999999999974
Q ss_pred CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECC
Q ss_conf 563220023355641564420489999999988765310266652688068
Q gi|254780371|r 188 LPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGG 238 (431)
Q Consensus 188 ~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGG 238 (431)
+++|++.||-+ +++...|++.....++.+.++++++.....+++.|.||=
T Consensus 152 ~~~L~l~GLM~-ipp~~~d~~~~~~~F~~l~~l~~~l~~~~~~~~~LSMGM 201 (228)
T COG0325 152 LPNLELRGLMT-IPPLTDDPEEIFAVFRKLRKLFDELKAKYPPIDELSMGM 201 (228)
T ss_pred CCCCEEEEEEE-ECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCC
T ss_conf 89976757774-179989979999999999999999987458978526867
No 53
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins. This subfamily contains mostly uncharacterized eukaryotic proteins with similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog)
Probab=98.38 E-value=2.1e-05 Score=56.75 Aligned_cols=187 Identities=21% Similarity=0.216 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCC-EEEECHHHHHHHHHCCCCCCC--EEECCCCCCCHH
Q ss_conf 99999999999986144797899964107999999999973992-898689998652212578431--244477542012
Q gi|254780371|r 34 TTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSG-LDIVSEGELRRALAAPVPAER--IVFSGVGKTIDE 110 (431)
Q Consensus 34 ~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g-~dv~S~~El~~al~~G~~~~~--Ii~~g~~k~~~~ 110 (431)
...|++++.+..+..+..++++.-..|+.|...| +.+.+.|.. |-=.-..|+..=. ..++ ++ -.|-|+--+. -
T Consensus 5 l~~I~~~I~~a~~~~~~~~v~LiAVsK~~~~e~I-~~a~~~G~~~fGENrvQE~~~K~-~~l~-~~i~WHfIG~LQsN-K 80 (227)
T cd06822 5 LKRIRQAVKRASKKLPASKPRLVAVSKTKPAELI-KEAYDAGQRHFGENYVQELIEKA-PDLP-IDIKWHFIGHLQSN-K 80 (227)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHH-HHHHHCCCCCCCCCHHHHHHHHH-HHCC-CCCEEEEECCCCHH-H
T ss_conf 9999999999997679999689999799899999-99998699602886099999999-8453-25459996453243-4
Q ss_pred HHHHHHC-CCC-CCCCCCCHHHHHHHHHHCCCC--CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH-
Q ss_conf 4444206-872-333322024676877411334--42158998723778674433322334445688711113457776-
Q gi|254780371|r 111 IDLALQS-GIY-CFNVESESELKTLNQRAVSLG--KKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYA- 185 (431)
Q Consensus 111 l~~ai~~-gv~-~i~vDs~~el~~l~~~a~~~~--~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~- 185 (431)
++.++.. .+. +=+|||+.-++.|...+.+.+ ++.+|+|-||. ++..+|+|++++++.++++.+
T Consensus 81 vk~i~~~~~~~~IhSvDs~kla~~l~~~~~~~~~~~~l~vliQVNi------------~~E~~K~G~~~~e~~~~~~~i~ 148 (227)
T cd06822 81 VKKLLKVPNLYMVETVDSEKLADKLNKAWEKLGEREPLKVMVQVNT------------SGEESKSGLEPSEAVELVKHII 148 (227)
T ss_pred HHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEEEEC------------CCCCCCCCCCHHHHHHHHHHHH
T ss_conf 8999706774466415749999999999997368887069999702------------7864568989999999999999
Q ss_pred HHCCCCCHHHHHHHHHHCCCCCHHH-HHHHHHHHHHHHHHH-CCCCCCC--EEEEC
Q ss_conf 4156322002335564156442048-999999998876531-0266652--68806
Q gi|254780371|r 186 STLPGVKISGVDMHIGSQIDQIESF-HKAFKLLRDLTQQLR-SNGHNIQ--HIDVG 237 (431)
Q Consensus 186 ~~~~~l~l~GlH~H~GS~~~~~~~~-~~~~~~~~~~~~~l~-~~g~~~~--~ldiG 237 (431)
..+++|++.||-+ ++....+...- ...++.+.++.+++. ..+.+.+ .|.||
T Consensus 149 ~~~~~l~i~GLMt-i~p~~~~~~~~~~~~F~~l~~l~~~l~~~~~~~~~~~eLSMG 203 (227)
T cd06822 149 EECPNLKFSGLMT-IGSFGYSLSSGPNPDFLCLVDCRKKVCEKLGINPDDLELSMG 203 (227)
T ss_pred HHCCCCEEEEEEE-ECCCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCEECCC
T ss_conf 8689976889998-698998800221399999999999999974999997988685
No 54
>KOG3157 consensus
Probab=97.72 E-value=0.00032 Score=48.79 Aligned_cols=188 Identities=21% Similarity=0.260 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHCC-----CCCCEEEEEEECCCCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCCE--EECCCCC
Q ss_conf 999999999998614-----479789996410799999999997399-28986899986522125784312--4447754
Q gi|254780371|r 35 TAIEKNYLTFSNAFD-----GMDTMVCYALKANSNQAVIKTLAHLGS-GLDIVSEGELRRALAAPVPAERI--VFSGVGK 106 (431)
Q Consensus 35 ~~i~~n~~~l~~a~~-----~~~~~i~yAvKaN~~~~il~~l~~~G~-g~dv~S~~El~~al~~G~~~~~I--i~~g~~k 106 (431)
..++..+.+.+++.. ...+++.--.|+-|.. .+..+.+.|- .|-=.=..|+. .++..=|++| .|-|..-
T Consensus 9 ~~L~~v~~rv~qa~~~~~r~~~~~rlvaVSKtKPa~-~i~~~Y~~GqR~FGENYVQEl~--eKap~lp~DI~WHFIG~lQ 85 (244)
T KOG3157 9 SALRAVIERVQQAVNQRPRDENAVRLVAVSKTKPAS-LIIEAYDAGQRHFGENYVQELI--EKAPLLPDDIKWHFIGHLQ 85 (244)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHH-HHHHHHHCCCCHHHHHHHHHHH--HHCCCCCCCCEEEEECHHH
T ss_conf 899999999999998444566644899962578689-9999987172704588999999--8462476213265644132
Q ss_pred CCHHHHHHHHCCCCCC-CCCCCHHHHHHHHHHCCCCC--CEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 2012444420687233-33220246768774113344--21589987237786744333223344456887111134577
Q gi|254780371|r 107 TIDEIDLALQSGIYCF-NVESESELKTLNQRAVSLGK--KAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYA 183 (431)
Q Consensus 107 ~~~~l~~ai~~gv~~i-~vDs~~el~~l~~~a~~~~~--~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~ 183 (431)
+..-=..+--.+...+ +|||+--...+.+...++++ +.+|++.|| |++.++|+|+.+.++.++++
T Consensus 86 snK~kkl~svpnL~~vetVDseK~A~~ld~a~~k~g~~~PL~V~VQvN------------TSGEd~K~Giepse~~~l~~ 153 (244)
T KOG3157 86 SNKCKKLLSVPNLYSVETVDSEKKARKLDSAWSKLGPDNPLKVLVQVN------------TSGEDSKSGIEPSEAPELAE 153 (244)
T ss_pred HCCCCHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEEE------------CCCCCCCCCCCHHHHHHHHH
T ss_conf 311001106786478873126989888889999529999728999961------------67754457988366599999
Q ss_pred HHHH-CCCCCHHHHHHHHHHCCCC---CHH--HHHHHHHHHHHHHHH-HCCCCCCCEEEECCCCCC
Q ss_conf 7641-5632200233556415644---204--899999999887653-102666526880687300
Q gi|254780371|r 184 YAST-LPGVKISGVDMHIGSQIDQ---IES--FHKAFKLLRDLTQQL-RSNGHNIQHIDVGGGLGI 242 (431)
Q Consensus 184 ~~~~-~~~l~l~GlH~H~GS~~~~---~~~--~~~~~~~~~~~~~~l-~~~g~~~~~ldiGGGf~i 242 (431)
.++. +++|++.|| +-+||.-.+ .+. |. .+.++-+.+ ++.|...+.+-+-=|+..
T Consensus 154 ~i~~~c~nL~f~Gl-MTIGs~~~s~ss~eNpDF~----~L~~~r~~ic~~lg~~~dq~eLSMGMS~ 214 (244)
T KOG3157 154 HIKSECKNLKFSGL-MTIGSFDNSHSSGENPDFQ----VLVKLRESICKKLGIPADQVELSMGMSA 214 (244)
T ss_pred HHHHHCCCCEEEEE-EEECCCCCCCCCCCCCCHH----HHHHHHHHHHHHHCCCHHHHHHHCCCCH
T ss_conf 99986876345204-7753566655689996579----9999999999984898678100235636
No 55
>TIGR00044 TIGR00044 conserved hypothetical protein TIGR00044; InterPro: IPR011078 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). PLP is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination , , . PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors . Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy . PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalyzed reactions, enzymatic and non-enzymatic . Proteins in this entry occur in archaea, bacteria and eukaryotes. They are encoded by genes which are often co-transcribed with proline biosysnthesis genes , although their function in vivo has not yet been demonstrated. The structure of the yeast protein YBL036C (P38197 from SWISSPROT) has been determined to a resolution of 2.0 A . Similar in structure to the N-terminal domains of alanine racemase and ornithine decarboxylase, it forms a TIM barrel fold which begins with a long N-terminal helix, rather than the classical beta strand found at the beginning of most other TIM barrels. Unlike alanine racemase and ornithine decarboxylase, which are two-domain dimeric proteins, the yeast protein is a single domain monomer. A pyridoxal 5'-phosphate cofactor is covalently bound towards the C-terminal end of the barrel, which is the usual active site in TIM-barrel folds. Some racemase activity was observed for this protein and it was suggested by the authors that it may function as a general racemase ..
Probab=97.21 E-value=0.00063 Score=46.76 Aligned_cols=169 Identities=20% Similarity=0.252 Sum_probs=113.4
Q ss_pred CEEEEEE-ECCCCHHHHHHHHHCCCC-EEEECHHHHH---HHHH-CCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 7899964-107999999999973992-8986899986---5221-25784312444775420124444206872333322
Q gi|254780371|r 53 TMVCYAL-KANSNQAVIKTLAHLGSG-LDIVSEGELR---RALA-APVPAERIVFSGVGKTIDEIDLALQSGIYCFNVES 126 (431)
Q Consensus 53 ~~i~yAv-KaN~~~~il~~l~~~G~g-~dv~S~~El~---~al~-~G~~~~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs 126 (431)
+++ -|| |+-|...| +.+.++|.. |-=.-..|+. ..+. .++.+-.-+|-|+--+......+-... .+=+|||
T Consensus 42 v~L-lAVSK~Kp~saI-~~~Y~aG~R~FGEN~VQE~~~Ki~~l~~~~~~G~~w~~ig~~~~~K~~~v~~~f~-~~ht~D~ 118 (250)
T TIGR00044 42 VKL-LAVSKTKPASAI-QAAYDAGQRAFGENYVQELVEKIKLLEDLGVKGLEWHFIGPLQSNKARLVVENFD-WVHTIDS 118 (250)
T ss_pred EEE-EEEECCCCHHHH-HHHHHCCCCHHCCHHHHHHHHHHHHHHCCCCCEEHHHCCCCCHHHHHHHHCCCHH-HHHHHHH
T ss_conf 478-885156768899-9997458412000035546899986021675611200013002345665215605-7887898
Q ss_pred CHHHHHHHHHHCCCCC---CEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH--H-HHCCCCCHHHHHHHH
Q ss_conf 0246768774113344---215899872377867443332233444568871111345777--6-415632200233556
Q gi|254780371|r 127 ESELKTLNQRAVSLGK---KAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAY--A-STLPGVKISGVDMHI 200 (431)
Q Consensus 127 ~~el~~l~~~a~~~~~---~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~--~-~~~~~l~l~GlH~H~ 200 (431)
+--..+|++.+...++ ...++|-||. ...+||=|+.+||+...+.. + ..+++|++.||-+ +
T Consensus 119 LkiA~kLn~~r~~~~~DCnpl~~L~QIn~------------s~Ee~KSG~~~EE~~~~~~~ff~SE~lk~LkL~GLM~-I 185 (250)
T TIGR00044 119 LKIAKKLNEQREKLQPDCNPLNVLLQINI------------SDEESKSGIQPEELLELASQFFLSEELKHLKLRGLMT-I 185 (250)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEEE------------CCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHCCCCC-C
T ss_conf 99987798876874777567410245321------------5434655788899998989888876121223103334-7
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHCCCC--CCCEEEEC
Q ss_conf 41564420489999999988765310266--65268806
Q gi|254780371|r 201 GSQIDQIESFHKAFKLLRDLTQQLRSNGH--NIQHIDVG 237 (431)
Q Consensus 201 GS~~~~~~~~~~~~~~~~~~~~~l~~~g~--~~~~ldiG 237 (431)
|+...+...-....+.+..++..++..-. ..+.|.||
T Consensus 186 ~a~~~~~~~~~~~f~~~~~l~~~~K~~~~~~~~d~LSMG 224 (250)
T TIGR00044 186 GAPTDSEEDQEESFREMKKLFEQIKQASPFSLIDTLSMG 224 (250)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCC
T ss_conf 988888888999999999999986553114531010257
No 56
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=94.98 E-value=0.34 Score=28.20 Aligned_cols=78 Identities=19% Similarity=0.168 Sum_probs=40.4
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCEEECCC
Q ss_conf 49978997799999999999986144797899964107999999999973992898689998652212578431244477
Q gi|254780371|r 25 VQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGV 104 (431)
Q Consensus 25 ~gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~S~~El~~al~~G~~~~~Ii~~g~ 104 (431)
.||||.. ++. .+-+++|++.|| +..+.==+|+-..- ..|.++|.++|-+--.++=..+
T Consensus 35 ~GTPLIk-~eG--~~aV~~lr~~fP--~~~ivAD~KtmDaG-----------------~~Ea~~A~~AGADivtVlG~a~ 92 (429)
T PRK07028 35 AGTPLIK-SEG--MNAIRTLRKNFP--DLTIVADMKTMDTG-----------------AMEVEMAAKAGADVVCILGVAD 92 (429)
T ss_pred ECCHHHH-HHH--HHHHHHHHHHCC--CCEEEEEEEECCCC-----------------HHHHHHHHHCCCCEEEEECCCC
T ss_conf 1768888-641--899999998789--98698876404550-----------------8899999876998899945788
Q ss_pred CCCCHH-HHHHHHCCCCCCCCC
Q ss_conf 542012-444420687233332
Q gi|254780371|r 105 GKTIDE-IDLALQSGIYCFNVE 125 (431)
Q Consensus 105 ~k~~~~-l~~ai~~gv~~i~vD 125 (431)
..+-++ ++.|-++|+. +.+|
T Consensus 93 d~TI~~aV~aA~k~G~~-v~vD 113 (429)
T PRK07028 93 DSTIADAVRAARKYGVL-VMAD 113 (429)
T ss_pred HHHHHHHHHHHHHCCCE-EEEE
T ss_conf 36999999999970988-9998
No 57
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=94.49 E-value=0.23 Score=29.37 Aligned_cols=157 Identities=9% Similarity=0.083 Sum_probs=97.4
Q ss_pred CHHHHHHHHHCCCCEEE--ECHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHH--HCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 99999999973992898--68999865221257843124447754201244442--068723333220246768774113
Q gi|254780371|r 64 NQAVIKTLAHLGSGLDI--VSEGELRRALAAPVPAERIVFSGVGKTIDEIDLAL--QSGIYCFNVESESELKTLNQRAVS 139 (431)
Q Consensus 64 ~~~il~~l~~~G~g~dv--~S~~El~~al~~G~~~~~Ii~~g~~k~~~~l~~ai--~~gv~~i~vDs~~el~~l~~~a~~ 139 (431)
-..+.+.+.+.|..+-+ .++..++.+++.|++ ++| |..-..+-|+.|= +..+.++.+|+.+...++.+.+++
T Consensus 411 Gq~var~L~~~gi~~vviD~d~~~V~~~r~~G~~---v~y-GDat~~~vL~~AGi~~Ar~vViaidd~~~~~~iv~~~r~ 486 (615)
T PRK03562 411 GQIVGRLLLSSGVKMVVLDHDPDHIETLRKFGMK---VFY-GDATRMDLLESAGAAKAEVLINAIDDPQTNLQLTELVKE 486 (615)
T ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCE---EEE-ECCCCHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 6999999997899879997999999999967990---897-689999999867914068899994989999999999997
Q ss_pred CCCCEEEEEEEECC--------CCCC--CCCCCCC----C-CCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCC
Q ss_conf 34421589987237--------7867--4433322----3-344456887111134577764156322002335564156
Q gi|254780371|r 140 LGKKAPIAFRVNPD--------INAN--THKKIST----G-KKEDKFGIPIHQIHSLYAYASTLPGVKISGVDMHIGSQI 204 (431)
Q Consensus 140 ~~~~~~I~lRinp~--------~~~~--~~~~~~t----g-~~~sKFGi~~~~~~~~~~~~~~~~~l~l~GlH~H~GS~~ 204 (431)
..+..+|..|-.-. .+.. ..+.+.+ + .--...|++++++.+..+..++++.--+..++-|.....
T Consensus 487 ~~P~l~IiaRard~~~~~~L~~~Ga~~vv~Et~essL~l~~~~L~~lG~~~~~a~~~~~~fr~~d~~~l~~~~~~~~d~~ 566 (615)
T PRK03562 487 HFPHLQIIARARDVDHYIRLRQAGVEKPERETFEGALKSGRLALESLGLGPYEARERADRFRRFNIQMVEEMAPHENDTK 566 (615)
T ss_pred HCCCCEEEEEECCHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 58998699983977889999978999896665899999999999980999999999999999999999999864357879
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q ss_conf 44204899999999887653
Q gi|254780371|r 205 DQIESFHKAFKLLRDLTQQL 224 (431)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~l 224 (431)
.-.+...++.+++.+++++=
T Consensus 567 ~~~~~~~~~~~~l~~~~~~~ 586 (615)
T PRK03562 567 KRAAVYKRTSAMLSEIITED 586 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999
No 58
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=94.13 E-value=0.26 Score=29.02 Aligned_cols=129 Identities=11% Similarity=0.060 Sum_probs=77.6
Q ss_pred HHHHHHHHHCCCCEEE--ECHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHH--HCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 9999999973992898--68999865221257843124447754201244442--0687233332202467687741133
Q gi|254780371|r 65 QAVIKTLAHLGSGLDI--VSEGELRRALAAPVPAERIVFSGVGKTIDEIDLAL--QSGIYCFNVESESELKTLNQRAVSL 140 (431)
Q Consensus 65 ~~il~~l~~~G~g~dv--~S~~El~~al~~G~~~~~Ii~~g~~k~~~~l~~ai--~~gv~~i~vDs~~el~~l~~~a~~~ 140 (431)
..+.+.+.+.|..+-+ .++..++.+++.|+ +++| |..-.++-|+.|= +....++.+|+.+...++.+.+++.
T Consensus 413 q~var~L~~~gi~~vviD~d~~~V~~~r~~G~---~v~y-GDat~~~vL~~AGi~~A~~vViai~d~~~~~~iv~~~r~~ 488 (602)
T PRK03659 413 QVIGRLLMANKMRITVLERDISAVNLMRKYGY---KVYY-GDATQLELLRAAGAEKAEAIVITCNEPEDTMKLVELCQQH 488 (602)
T ss_pred HHHHHHHHHCCCCEEEEECCHHHHHHHHHCCC---EEEE-ECCCCHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHH
T ss_conf 99999999789998999786799999997899---0897-5899999998679040588999829899999999999987
Q ss_pred CCCEEEEEEEECC--------CCCC--CCCCCCC----C-CCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHH
Q ss_conf 4421589987237--------7867--4433322----3-34445688711113457776415632200233
Q gi|254780371|r 141 GKKAPIAFRVNPD--------INAN--THKKIST----G-KKEDKFGIPIHQIHSLYAYASTLPGVKISGVD 197 (431)
Q Consensus 141 ~~~~~I~lRinp~--------~~~~--~~~~~~t----g-~~~sKFGi~~~~~~~~~~~~~~~~~l~l~GlH 197 (431)
.+..+|..|-.-. .+.. ..+.+.+ + .--...|++++++.+..+.-++++.-.+.-.+
T Consensus 489 ~P~l~I~aRar~~~~~~~L~~~Ga~~vv~Et~essL~l~~~~L~~lG~~~~~a~~~~~~f~~~d~~~l~~~~ 560 (602)
T PRK03659 489 FPHLHILARARGRVEAHELLQAGVTQFSRETFSSALELGRKTLVSLGMHPHQAQRAQLHFRRLDMRMLRELI 560 (602)
T ss_pred CCCCEEEEEECCHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 869969998697899999997899978662789999999999998099999999999999999999999987
No 59
>pfam01261 AP_endonuc_2 Xylose isomerase-like TIM barrel. This TIM alpha/beta barrel structure is found in xylose isomerase and in endonuclease IV (EC:3.1.21.2). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae.
Probab=90.46 E-value=0.57 Score=26.69 Aligned_cols=95 Identities=17% Similarity=0.186 Sum_probs=55.8
Q ss_pred CCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHH
Q ss_conf 11345777641563220023355641564420489999999988765310266652688068730002665455311456
Q gi|254780371|r 177 QIHSLYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDY 256 (431)
Q Consensus 177 ~~~~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~ 256 (431)
++.++.+.++++ ||.+.++++...-...+...+.+.++.+....+..++.| .+.+.+..|....... ....++.+
T Consensus 27 ~~~~l~~~~~~~-gl~i~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~a~~lG--~~~i~~~~g~~~~~~~--~~~~~~~~ 101 (201)
T pfam01261 27 EIEELKALLKEY-GLEITSLNPSLGLLEPDEREREAALEALKRAIELAAALG--AKVVVVHPGGALPGED--REEALDRL 101 (201)
T ss_pred HHHHHHHHHHHC-CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--CCEEEECCCCCCCCCC--HHHHHHHH
T ss_conf 899999999970-997999977865458898999999999999999999739--9589982688788999--99999999
Q ss_pred HHH---HHHHHCCCCCEEEEEEC
Q ss_conf 555---65421024530344101
Q gi|254780371|r 257 ASL---IHQYFGNLQCKIILEPG 276 (431)
Q Consensus 257 ~~~---i~~~~~~~~~~l~~EPG 276 (431)
.+. +.+...+.++++.+||-
T Consensus 102 ~~~l~~~~~~a~~~gi~i~iE~~ 124 (201)
T pfam01261 102 AESLNELAELAEEYGVKLALENH 124 (201)
T ss_pred HHHHHHHHHHHHHCCEEEEEEEC
T ss_conf 99999999988755738999987
No 60
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit; InterPro: IPR005776 This family describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea . The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.; GO: 0008948 oxaloacetate decarboxylase activity, 0006814 sodium ion transport.
Probab=90.44 E-value=0.7 Score=26.04 Aligned_cols=218 Identities=15% Similarity=0.201 Sum_probs=120.4
Q ss_pred EECCCCHHHHHHHHHCCC-C--------EEEE------CHHHHHHHHHCCCCCCCE--EECCCCC----------CCHHH
Q ss_conf 410799999999997399-2--------8986------899986522125784312--4447754----------20124
Q gi|254780371|r 59 LKANSNQAVIKTLAHLGS-G--------LDIV------SEGELRRALAAPVPAERI--VFSGVGK----------TIDEI 111 (431)
Q Consensus 59 vKaN~~~~il~~l~~~G~-g--------~dv~------S~~El~~al~~G~~~~~I--i~~g~~k----------~~~~l 111 (431)
+.+--...|+..|.+.|. . ||+| -|+|=.+.++-+.|..+| ++=|.+- =.+.+
T Consensus 18 mRteDMLPi~~~LD~vGfwSLEvWGGATFDaC~RFL~EDPW~RLR~lk~~~pnT~L~MLLRGQNLlGYRHYADDVVe~FV 97 (616)
T TIGR01108 18 MRTEDMLPILEKLDDVGFWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTKLQMLLRGQNLLGYRHYADDVVEAFV 97 (616)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 57313689998750249556520244105578442488855899999973578751234204542344158436899999
Q ss_pred HHHHHCCCCCC-CCCCCHHHHHHHH---HHCCCCC-CEEEEEEEECCCCCCCCC-CCCCCCCCCCC-----------CC-
Q ss_conf 44420687233-3322024676877---4113344-215899872377867443-33223344456-----------88-
Q gi|254780371|r 112 DLALQSGIYCF-NVESESELKTLNQ---RAVSLGK-KAPIAFRVNPDINANTHK-KISTGKKEDKF-----------GI- 173 (431)
Q Consensus 112 ~~ai~~gv~~i-~vDs~~el~~l~~---~a~~~~~-~~~I~lRinp~~~~~~~~-~~~tg~~~sKF-----------Gi- 173 (431)
+.|+++|+.+| .+|-++.-+.+.. .++++++ .+...|=..-. ..+|-+ ++..+.+--.+ ||
T Consensus 98 ~~a~~NG~DVFRiFDALND~RNl~~ai~a~Kk~g~dHvQg~iSYTtS-PvHTl~~yl~la~~L~~~G~DSI~IKDMaGlL 176 (616)
T TIGR01108 98 KKAVENGLDVFRIFDALNDPRNLQKAIEAAKKHGADHVQGAISYTTS-PVHTLEKYLELAKELLEMGVDSICIKDMAGLL 176 (616)
T ss_pred HHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC-CHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 99997598089951245887789999999997389789999712468-43678889999999998188605520200464
Q ss_pred CCCCCHHHHHHHHHCCC-CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCC----C----
Q ss_conf 71111345777641563-22002335564156442048999999998876531026665268806873000----2----
Q gi|254780371|r 174 PIHQIHSLYAYASTLPG-VKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIA----Y---- 244 (431)
Q Consensus 174 ~~~~~~~~~~~~~~~~~-l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~----y---- 244 (431)
+|.-+.+|.+.+|+.=+ +.+ -||+|.-|+ +..-.+.++++.=.+.++.. +.-+..|-|.|.. |
T Consensus 177 TP~~AYELV~alK~~~~n~pv-hLH~H~TtG-mA~~AllkA~EAG~d~iDTA------isS~S~gtSHPptE~lv~~L~~ 248 (616)
T TIGR01108 177 TPKVAYELVSALKKEFGNLPV-HLHSHATTG-MAEMALLKAIEAGADMIDTA------ISSMSGGTSHPPTETLVAALRG 248 (616)
T ss_pred CHHHHHHHHHHHHHHCCCEEE-EEECCCCHH-HHHHHHHHHHHCCCCCCHHC------CCCCCCCCCCCHHHHHHHHHHC
T ss_conf 415899999999742397468-863247233-79999998887078800200------5523478888747999999705
Q ss_pred CCCCCCCC------HHHHHHHHHHHHCCC-CCEEEEEECCEECCCCCEEEEEEEE
Q ss_conf 66545531------145655565421024-5303441011120366325888764
Q gi|254780371|r 245 HSDHRPPS------SSDYASLIHQYFGNL-QCKIILEPGRFLVADVGILVTKVIS 292 (431)
Q Consensus 245 ~~~~~~~~------~~~~~~~i~~~~~~~-~~~l~~EPGR~lva~ag~ll~~V~~ 292 (431)
.+-+..+| +.+|+..+++.+..+ +..+ --.|+-+|+.+|=+
T Consensus 249 ~gyD~gld~~~L~~i~~YFr~VRkKY~~fle~~~-------~~~D~RiLv~QvPG 296 (616)
T TIGR01108 249 TGYDTGLDIELLLEIADYFRKVRKKYSQFLESQL-------KGPDSRILVSQVPG 296 (616)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-------CCCCCEEEEEECCC
T ss_conf 7874310279999999999999999988607677-------78884489973688
No 61
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=89.20 E-value=1.2 Score=24.40 Aligned_cols=20 Identities=25% Similarity=0.473 Sum_probs=8.1
Q ss_pred HHHHHHHCCCCCCCEEEECCCC
Q ss_conf 8876531026665268806873
Q gi|254780371|r 219 DLTQQLRSNGHNIQHIDVGGGL 240 (431)
Q Consensus 219 ~~~~~l~~~g~~~~~ldiGGGf 240 (431)
+++..+.+.| +++||++.|+
T Consensus 228 ~~~~~l~~~G--vD~i~vs~G~ 247 (353)
T cd02930 228 ALAKALEAAG--ADILNTGIGW 247 (353)
T ss_pred HHHHHHHHCC--CCEEEECCCC
T ss_conf 9999999819--9999963774
No 62
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=88.66 E-value=1.5 Score=23.87 Aligned_cols=15 Identities=33% Similarity=0.299 Sum_probs=8.2
Q ss_pred CCCHHHHHHHHCCCC
Q ss_conf 420124444206872
Q gi|254780371|r 106 KTIDEIDLALQSGIY 120 (431)
Q Consensus 106 k~~~~l~~ai~~gv~ 120 (431)
.+-.||..|++++..
T Consensus 80 m~~~EL~Tavr~~lp 94 (205)
T cd02003 80 MLHSEIVTAVQEGLK 94 (205)
T ss_pred CCHHHHHHHHHHCCC
T ss_conf 520489999982995
No 63
>pfam07745 Glyco_hydro_53 Glycosyl hydrolase family 53. This domain belongs to family 53 of the glycosyl hydrolase classification. These enzymes are enzymes are endo-1,4- beta-galactanases (EC:3.2.1.89). The structure of this domain is known and has a TIM barrel fold.
Probab=88.16 E-value=2.2 Score=22.70 Aligned_cols=142 Identities=25% Similarity=0.383 Sum_probs=79.2
Q ss_pred CEEEECHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 28986899986522125784312444775420124444206872333322024676877411334421589987237786
Q gi|254780371|r 77 GLDIVSEGELRRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINA 156 (431)
Q Consensus 77 g~dv~S~~El~~al~~G~~~~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~ 156 (431)
|+|+++..|++.+ |. ..++..++..+-++...++|+..| |+-|=+||--
T Consensus 3 G~DiS~~~~~E~~---G~----~y~d~~G~~~d~~~iLk~~GvN~v----------------------RlRvWvnP~~-- 51 (332)
T pfam07745 3 GADISSLNELENA---GV----SYKNENGQTQDLFTILKDAGVNSI----------------------RLRVWVNPYD-- 51 (332)
T ss_pred CCCCHHHHHHHHC---CC----EEECCCCCCCCHHHHHHHCCCCEE----------------------EEEEEECCCC--
T ss_conf 1110469999976---98----689999988689999997698869----------------------9998657887--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHH-------HHCC-------CCCHHHHHH-HHHHHHHH
Q ss_conf 74433322334445688711113457776415632200233556-------4156-------442048999-99999887
Q gi|254780371|r 157 NTHKKISTGKKEDKFGIPIHQIHSLYAYASTLPGVKISGVDMHI-------GSQI-------DQIESFHKA-FKLLRDLT 221 (431)
Q Consensus 157 ~~~~~~~tg~~~sKFGi~~~~~~~~~~~~~~~~~l~l~GlH~H~-------GS~~-------~~~~~~~~~-~~~~~~~~ 221 (431)
.| - .+.++..++++++++. |+++. |.||- |.|. .+.+...++ .....++.
T Consensus 52 -------~g-~-----~dl~~v~~~akrak~~-Gmkvl-LdfHYSD~WADPg~Q~~P~aW~~~~~~~L~~~vy~yT~~vl 116 (332)
T pfam07745 52 -------TG-N-----NDLDDVIEIAKRAKAA-GMKVL-LDFHYSDTWADPGKQTKPKAWASLDFEQLKKALYNYTKDVL 116 (332)
T ss_pred -------CC-C-----CCHHHHHHHHHHHHHC-CCEEE-EEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf -------77-6-----8999999999999987-99399-98631355468555768633345999999999999999999
Q ss_pred HHHHCCCCCCCEEEECCCCCCC-CCCCCCCCCHHHHHHHHHHHH
Q ss_conf 6531026665268806873000-266545531145655565421
Q gi|254780371|r 222 QQLRSNGHNIQHIDVGGGLGIA-YHSDHRPPSSSDYASLIHQYF 264 (431)
Q Consensus 222 ~~l~~~g~~~~~ldiGGGf~i~-y~~~~~~~~~~~~~~~i~~~~ 264 (431)
..+++.|..++++-+|--.--. -.+.....+++.+++.++...
T Consensus 117 ~~lk~~Gv~pd~VQVGNEin~GmLwp~g~~~~~~~~a~ll~ag~ 160 (332)
T pfam07745 117 NALKEAGITPDMVQVGNEITSGMLWPEGKTPNWENLAKLLNSGY 160 (332)
T ss_pred HHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99998699964478641355664476889778999999999999
No 64
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=88.04 E-value=0.45 Score=27.36 Aligned_cols=16 Identities=6% Similarity=0.179 Sum_probs=6.4
Q ss_pred CCCCCCCHHHHHHHHH
Q ss_conf 8871111345777641
Q gi|254780371|r 172 GIPIHQIHSLYAYAST 187 (431)
Q Consensus 172 Gi~~~~~~~~~~~~~~ 187 (431)
|++.++..++++.+.+
T Consensus 224 g~~~~e~~~~~~~l~~ 239 (327)
T cd02803 224 GLTLEEAIEIAKALEE 239 (327)
T ss_pred CCCHHHHHHHHHHHHH
T ss_conf 9998999999999985
No 65
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=87.96 E-value=2.2 Score=22.62 Aligned_cols=60 Identities=20% Similarity=0.104 Sum_probs=29.3
Q ss_pred CEEEECHHHHH-HHHHCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 28986899986-5221257843124447754201244442068723333220246768774113344215899
Q gi|254780371|r 77 GLDIVSEGELR-RALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAF 148 (431)
Q Consensus 77 g~dv~S~~El~-~al~~G~~~~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~l 148 (431)
|-.+.|..|+. .|...|+| ++ -.|+. +-.|-.+-.|.|.+||.+..+.|.+.-++.+|+|
T Consensus 707 ~~~a~s~eea~~~A~~iGYP---vl-----vRPSY----VLgG~aM~iv~~~eeL~~yl~~a~~~S~~~PVli 767 (1089)
T TIGR01369 707 WKIATSVEEAKEFASEIGYP---VL-----VRPSY----VLGGRAMEIVYNEEELARYLEEAVEVSPEHPVLI 767 (1089)
T ss_pred CCEECCHHHHHHHHHHCCCC---EE-----ECCCC----CCCCCCHHEECCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 85272879999998546992---89-----81683----0033621002678899999999997208997698
No 66
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=87.82 E-value=1.5 Score=23.72 Aligned_cols=99 Identities=16% Similarity=0.207 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHCCCCCCEEEEEEEE-CCCC-CCCCC----CCCCCCCCCCC-------CCCCCCCHHHH-------HHHH
Q ss_conf 0246768774113344215899872-3778-67443----33223344456-------88711113457-------7764
Q gi|254780371|r 127 ESELKTLNQRAVSLGKKAPIAFRVN-PDIN-ANTHK----KISTGKKEDKF-------GIPIHQIHSLY-------AYAS 186 (431)
Q Consensus 127 ~~el~~l~~~a~~~~~~~~I~lRin-p~~~-~~~~~----~~~tg~~~sKF-------Gi~~~~~~~~~-------~~~~ 186 (431)
+..++++-+...+.+- +|.+-++ ++-. ...+. .+..+....+. -++.+|+.+++ +.++
T Consensus 82 i~~~~~vt~avH~~G~--~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~~~~~~~pr~mt~eeI~~ii~~f~~AA~rA~ 159 (363)
T COG1902 82 IPGLKRLTEAVHAHGA--KIFIQLWHAGRKARASHPWLPSAVAPSAIPAPGGRRATPRELTEEEIEEVIEDFARAARRAK 159 (363)
T ss_pred HHHHHHHHHHHHHCCC--EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 3889999999985699--59998227761332235678764577744256678888865899999999999999999999
Q ss_pred H--CCCCCHHHHHHHHHHCCCC------CHH----HHHHHHHHHHHHHHHHCC
Q ss_conf 1--5632200233556415644------204----899999999887653102
Q gi|254780371|r 187 T--LPGVKISGVDMHIGSQIDQ------IES----FHKAFKLLRDLTQQLRSN 227 (431)
Q Consensus 187 ~--~~~l~l~GlH~H~GS~~~~------~~~----~~~~~~~~~~~~~~l~~~ 227 (431)
+ .+++++.|-|=|+-+|..+ .+. +..-++.++++.+..++.
T Consensus 160 ~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~ 212 (363)
T COG1902 160 EAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREA 212 (363)
T ss_pred HCCCCEEEEEECCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 83999899840444499985587557777766885899988999999999997
No 67
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=86.02 E-value=2.8 Score=21.97 Aligned_cols=16 Identities=0% Similarity=0.401 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHC
Q ss_conf 9999999988765310
Q gi|254780371|r 211 HKAFKLLRDLTQQLRS 226 (431)
Q Consensus 211 ~~~~~~~~~~~~~l~~ 226 (431)
..-++.++++.+.+++
T Consensus 198 enR~Rf~~Evi~aVR~ 213 (382)
T cd02931 198 ENRLRFAIEIVEEIKA 213 (382)
T ss_pred HHHCCHHHHHHHHHHH
T ss_conf 8856189999999999
No 68
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=86.02 E-value=2.8 Score=21.92 Aligned_cols=100 Identities=13% Similarity=0.222 Sum_probs=57.8
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCHHHHHH------HHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCC
Q ss_conf 456887111134577764156322002335------56415644204899999999887653102666526880687300
Q gi|254780371|r 169 DKFGIPIHQIHSLYAYASTLPGVKISGVDM------HIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGI 242 (431)
Q Consensus 169 sKFGi~~~~~~~~~~~~~~~~~l~l~GlH~------H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i 242 (431)
++.+.+.++..++.+.+.+. |+.+.++.+ +.|| .|+..-.++++.+.+..+.....| ++.|-+.|+- +
T Consensus 50 ~rL~w~~~~~~~ir~~~~~~-gi~i~s~cls~~~~~Pl~S--~D~~~R~~~~e~~~kaI~lA~~LG--i~~I~lag~d-v 123 (283)
T PRK13209 50 ARLDWSREQRLALVNALVET-GFRVNSMCLSAHRRFPLGS--EDDAVRAQGLEIMRKAIQLAQDLG--IRVIQLAGYD-V 123 (283)
T ss_pred CCCCCCHHHHHHHHHHHHHC-CCCCEEEECCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHCC--CCEEEECCCC-C
T ss_conf 35899999999999999981-9986033054555799999--799999999999999999999809--9989968876-6
Q ss_pred CCCCCCCCCCHHHHHHHHH---HHHCCCCCEEEEEE
Q ss_conf 0266545531145655565---42102453034410
Q gi|254780371|r 243 AYHSDHRPPSSSDYASLIH---QYFGNLQCKIILEP 275 (431)
Q Consensus 243 ~y~~~~~~~~~~~~~~~i~---~~~~~~~~~l~~EP 275 (431)
.| ........+.+.+.++ +...+.+++|.+||
T Consensus 124 ~~-~~~~~e~~~~f~e~L~~~~~~A~~~gV~L~iE~ 158 (283)
T PRK13209 124 YY-EEANNETRRRFIDGLKESVEMASRYSVTLAFEI 158 (283)
T ss_pred CC-CCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_conf 78-878599999999999999999998599899942
No 69
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=85.47 E-value=3 Score=21.74 Aligned_cols=24 Identities=8% Similarity=0.052 Sum_probs=8.4
Q ss_pred CHHHHHHHHHCCCCEEEECHHHHH
Q ss_conf 999999999739928986899986
Q gi|254780371|r 64 NQAVIKTLAHLGSGLDIVSEGELR 87 (431)
Q Consensus 64 ~~~il~~l~~~G~g~dv~S~~El~ 87 (431)
-..|.+....+|..+-+.|+.++.
T Consensus 164 yk~i~~aAl~y~h~V~a~sp~DiN 187 (322)
T PRK04452 164 YKKIAAAALAYGHAVIAWSPLDIN 187 (322)
T ss_pred HHHHHHHHHHCCCCEEEECCCCHH
T ss_conf 999999999739928997776778
No 70
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=85.39 E-value=3 Score=21.72 Aligned_cols=67 Identities=12% Similarity=0.244 Sum_probs=44.9
Q ss_pred CCCHHHHHHHCCCCE-EEEEHHHHHHHHHHHHHHCCCCCCEE------EEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 842999999749978-99779999999999998614479789------99641079999999999739928986
Q gi|254780371|r 15 NVSLEKLAHVVQTPF-YCYSTTAIEKNYLTFSNAFDGMDTMV------CYALKANSNQAVIKTLAHLGSGLDIV 81 (431)
Q Consensus 15 ~~~l~~La~~~gTP~-yV~d~~~i~~n~~~l~~a~~~~~~~i------~yAvKaN~~~~il~~l~~~G~g~dv~ 81 (431)
--|..+||+.+|+|+ .|+|...+.+..+++..-|...+..+ .==+.+-.+..+++...+..+|+.|.
T Consensus 100 ~gSTA~lAk~l~~PVvLVid~~~~s~S~AAiv~G~~~fdp~v~iaGVIlNrVgserH~~llr~Ale~~~gv~vl 173 (451)
T COG1797 100 TGSTADLAKLLGAPVVLVVDASGLSRSVAAIVKGFKHFDPDVNIAGVILNRVGSERHYELLRDALEEYTGVPVL 173 (451)
T ss_pred CCCHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEE
T ss_conf 77799999985999899995752257899999889861998825789972477788999999875532798579
No 71
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=85.31 E-value=2.3 Score=22.60 Aligned_cols=133 Identities=16% Similarity=0.253 Sum_probs=74.1
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCC-CCC----CHHHHHHHHHCCCCCHHH
Q ss_conf 33322024676877411334421589987237-786744333223344456887-111----134577764156322002
Q gi|254780371|r 122 FNVESESELKTLNQRAVSLGKKAPIAFRVNPD-INANTHKKISTGKKEDKFGIP-IHQ----IHSLYAYASTLPGVKISG 195 (431)
Q Consensus 122 i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~-~~~~~~~~~~tg~~~sKFGi~-~~~----~~~~~~~~~~~~~l~l~G 195 (431)
+...|+..+.++.+...+.+.. ..|+..+ +...+|+.+. +.+ .++ +.++-+.++++ +++
T Consensus 43 l~~~Nl~~l~~il~~n~~~~I~---~fRlSS~l~P~~shp~~~--------~~~~~~~i~~~l~~iG~~ak~~-~iR--- 107 (316)
T PRK02308 43 IALSNLEDLLRILEYNIAHGIR---LYRLSSSLIPLASHPELV--------EWDYIEAFKEELRKIGALIKEH-NMR--- 107 (316)
T ss_pred HHHHHHHHHHHHHHHHHHCCCE---EEEECCCCCCCCCCCCCC--------CCCCHHHHHHHHHHHHHHHHHH-CCE---
T ss_conf 9999999999999999975970---899256636677773324--------5852999999999999999982-945---
Q ss_pred HHHHHHHC----CCCCHHHHHHHHHHHHHHHHHHCCCCC---CCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 33556415----644204899999999887653102666---52688068730002665455311456555654210245
Q gi|254780371|r 196 VDMHIGSQ----IDQIESFHKAFKLLRDLTQQLRSNGHN---IQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQYFGNLQ 268 (431)
Q Consensus 196 lH~H~GS~----~~~~~~~~~~~~~~~~~~~~l~~~g~~---~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~~~~~~~ 268 (431)
+.||.|-. ..+++...+.++.+.--++.+...|.+ .-.|.+||++| ++...++.|.+.....-....
T Consensus 108 ls~HPgqf~vL~S~~~~Vv~~si~dL~~Ha~~ld~mGl~~~~~i~IHigg~yg------dk~~a~~rf~~n~~~L~~~vr 181 (316)
T PRK02308 108 LSFHPDQFVVLNSPKPEVVENSIKDLEYHARLLDLMGIEDSSKINIHVGGAYG------DKEKALERFIENIKKLPESIK 181 (316)
T ss_pred EEECCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC------CHHHHHHHHHHHHHHCCHHHH
T ss_conf 86279762326899889999999999999999998479988628998147669------878999999998865899673
Q ss_pred CEEEEEE
Q ss_conf 3034410
Q gi|254780371|r 269 CKIILEP 275 (431)
Q Consensus 269 ~~l~~EP 275 (431)
-+|.+|=
T Consensus 182 ~RL~lEN 188 (316)
T PRK02308 182 KRLTLEN 188 (316)
T ss_pred HEEEEEC
T ss_conf 2689955
No 72
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=82.54 E-value=3.2 Score=21.58 Aligned_cols=42 Identities=14% Similarity=0.267 Sum_probs=19.0
Q ss_pred HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 99988765310266652688068730002665455311456555654210
Q gi|254780371|r 216 LLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQYFG 265 (431)
Q Consensus 216 ~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~~~~ 265 (431)
.+.+.++.+++.|++---+|+==|+| ..+.+.|...|.+.+.
T Consensus 189 ~~~~av~~ar~~Gf~~iniDLIyGlP--------~QT~~~~~~tL~~~~~ 230 (453)
T PRK13347 189 MVARAVELLRAAGFESINFDLIYGLP--------HQTVESFRETLDKVIA 230 (453)
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCC--------CCCHHHHHHHHHHHHH
T ss_conf 99999999998189865555552489--------9989999999999983
No 73
>pfam06506 PrpR_N Propionate catabolism activator. This domain is found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate.
Probab=81.26 E-value=4.4 Score=20.62 Aligned_cols=35 Identities=17% Similarity=0.131 Sum_probs=16.0
Q ss_pred CCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 20124444206872333322024676877411334
Q gi|254780371|r 107 TIDEIDLALQSGIYCFNVESESELKTLNQRAVSLG 141 (431)
Q Consensus 107 ~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~ 141 (431)
.-+.+...+...+....+++.+|++.....+++.|
T Consensus 89 ~~~~~~~il~~~i~~~~~~~~~e~~~~i~~l~~~G 123 (169)
T pfam06506 89 GLKALSELLGLDIVQRAYQSEEEARAAVKELKAQG 123 (169)
T ss_pred HHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCC
T ss_conf 89999999699359999668899999999999869
No 74
>pfam04131 NanE Putative N-acetylmannosamine-6-phosphate epimerase. This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilisation pathway found mainly in pathogenic bacteria.
Probab=80.83 E-value=4.2 Score=20.79 Aligned_cols=33 Identities=21% Similarity=0.074 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHCCC--CEEEECHHHHHHHHHCCCC
Q ss_conf 99999999997399--2898689998652212578
Q gi|254780371|r 63 SNQAVIKTLAHLGS--GLDIVSEGELRRALAAPVP 95 (431)
Q Consensus 63 ~~~~il~~l~~~G~--g~dv~S~~El~~al~~G~~ 95 (431)
+...+++.+++.++ =+||+|..|...|.++|++
T Consensus 80 ~~~~lv~~i~~~~~l~MAD~st~eea~~A~~~G~D 114 (192)
T pfam04131 80 DIESFIKRIKEKGQLAMADCSTFEEGLNAHKLGVD 114 (192)
T ss_pred CHHHHHHHHHHHCCEEEEECCCHHHHHHHHHCCCC
T ss_conf 89999999998199889974999999999985999
No 75
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=80.59 E-value=3.3 Score=21.45 Aligned_cols=16 Identities=13% Similarity=0.449 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHC
Q ss_conf 9999999988765310
Q gi|254780371|r 211 HKAFKLLRDLTQQLRS 226 (431)
Q Consensus 211 ~~~~~~~~~~~~~l~~ 226 (431)
..-++.++++.+.+++
T Consensus 201 enR~Rf~~Eii~aVr~ 216 (336)
T cd02932 201 ENRMRFLLEVVDAVRA 216 (336)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9998899999999999
No 76
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=80.06 E-value=4.2 Score=20.75 Aligned_cols=13 Identities=0% Similarity=0.225 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 1456555654210
Q gi|254780371|r 253 SSDYASLIHQYFG 265 (431)
Q Consensus 253 ~~~~~~~i~~~~~ 265 (431)
.+++.+++++.++
T Consensus 149 ~~el~~al~~a~~ 161 (178)
T cd02014 149 PDELEAALDEALA 161 (178)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999996
No 77
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=79.96 E-value=4.9 Score=20.34 Aligned_cols=57 Identities=14% Similarity=0.121 Sum_probs=31.3
Q ss_pred HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-----CCEEEEEECCEEC
Q ss_conf 9998876531026665268806873000266545531145655565421024-----5303441011120
Q gi|254780371|r 216 LLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQYFGNL-----QCKIILEPGRFLV 280 (431)
Q Consensus 216 ~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~~~~~~-----~~~l~~EPGR~lv 280 (431)
.+.+..+.+++.|++---+|+==|+| ..+.+.|...|.+.+.-. -+.|.+|||..+-
T Consensus 184 ~~~~ai~~~r~~gf~niniDLIyGlP--------gQt~~~~~~~l~~~l~l~p~HIS~Y~L~iep~T~l~ 245 (436)
T PRK08208 184 SVHQALELIRAAHFPSLNIDLIYGIP--------GQTHASFMESLHQALVYRPEELFLYPLYVRPLTGLG 245 (436)
T ss_pred HHHHHHHHHHHCCCCEEEEEEEECCC--------CCCHHHHHHHHHHHHCCCCCEEECCCCEECCCCCCC
T ss_conf 99999999998199857552443699--------999999999999998279898987633047898301
No 78
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=79.68 E-value=4.9 Score=20.32 Aligned_cols=13 Identities=31% Similarity=0.396 Sum_probs=6.1
Q ss_pred CCHHHHHHHHCCC
Q ss_conf 2012444420687
Q gi|254780371|r 107 TIDEIDLALQSGI 119 (431)
Q Consensus 107 ~~~~l~~ai~~gv 119 (431)
+..||..|+++++
T Consensus 83 ~~~EL~Ta~~~~l 95 (186)
T cd02015 83 NIQELATAAQYNL 95 (186)
T ss_pred CHHHHHHHHHHCC
T ss_conf 3599999998669
No 79
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=79.23 E-value=5.1 Score=20.19 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=13.9
Q ss_pred CCHHHHHHHHHHCC---CCCCEEEEEEEECC
Q ss_conf 20246768774113---34421589987237
Q gi|254780371|r 126 SESELKTLNQRAVS---LGKKAPIAFRVNPD 153 (431)
Q Consensus 126 s~~el~~l~~~a~~---~~~~~~I~lRinp~ 153 (431)
+.+++++|.+..++ .....+|.|.+||+
T Consensus 119 ~~~~l~~l~~~l~~~f~~~~~~EitiE~nP~ 149 (456)
T PRK09249 119 SPEQLTRLMALLREHFNFAPDAEISIEIDPR 149 (456)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf 9999999999999866889883599984347
No 80
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=77.83 E-value=5.6 Score=19.91 Aligned_cols=25 Identities=12% Similarity=0.127 Sum_probs=13.9
Q ss_pred CCCCCHHHHHHHHH-CCCCCHHHHHHH
Q ss_conf 71111345777641-563220023355
Q gi|254780371|r 174 PIHQIHSLYAYAST-LPGVKISGVDMH 199 (431)
Q Consensus 174 ~~~~~~~~~~~~~~-~~~l~l~GlH~H 199 (431)
.+.+..++++.+++ .+.. -.++|||
T Consensus 182 ~P~~v~~~i~~v~~~~~~~-~i~~H~H 207 (287)
T PRK05692 182 TPGQVRRVLEAVLAEFPAE-RLAGHFH 207 (287)
T ss_pred CHHHHHHHHHHHHHHCCCC-CEEEEEC
T ss_conf 9999999999999866887-2356744
No 81
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=77.75 E-value=5.6 Score=19.90 Aligned_cols=66 Identities=21% Similarity=0.385 Sum_probs=38.2
Q ss_pred HHHHHHHH-HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-C-CEEEEEECC
Q ss_conf 04899999-9998876531026665268806873000266545531145655565421024-5-303441011
Q gi|254780371|r 208 ESFHKAFK-LLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQYFGNL-Q-CKIILEPGR 277 (431)
Q Consensus 208 ~~~~~~~~-~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~~~~~~-~-~~l~~EPGR 277 (431)
+.|.+++. .+....+.++..+.+++.|=+|||-|..- .+..++.+...|.+.|... + .++-+|-||
T Consensus 204 ~~Yl~aL~kEI~~~~~~l~~~~~~i~TIY~GGGTPS~L----s~~ql~~ll~~i~~~F~~~~~~~EiTvEanR 272 (497)
T PRK08207 204 EPYLEALHYEIEEIGKYLKEKGLKIETIYFGGGTPTSI----TAEEFEKLLEEIYESFPDVKNVKEFTVEAGR 272 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEECEEEECCCCCCCC----CHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
T ss_conf 99999999999999987623798035699799810029----9999999999999865768999779997879
No 82
>TIGR00629 uvde UV damage endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts . The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism .; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair.
Probab=77.68 E-value=2.7 Score=22.07 Aligned_cols=165 Identities=15% Similarity=0.248 Sum_probs=88.2
Q ss_pred HHCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECC-CCCCCCCCCCCCCCC
Q ss_conf 2125784312444775420124444206872333322024676877411334421589987237-786744333223344
Q gi|254780371|r 90 LAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPD-INANTHKKISTGKKE 168 (431)
Q Consensus 90 l~~G~~~~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~-~~~~~~~~~~tg~~~ 168 (431)
++..=.|+.-+-|-|.|+++--...=..-+..+..-|+-++-++...-.+.|.. .+|+..+ +...+|+...
T Consensus 40 lqfeDePehhlknkPdkskePqdelG~e~v~~lg~aN~rd~~k~l~w~~~~GI~---f~R~SS~~~PfAsHp~~g----- 111 (345)
T TIGR00629 40 LQFEDEPEHHLKNKPDKSKEPQDELGKEAVKTLGKANLRDLVKLLHWNIGYGIR---FLRLSSSLFPFASHPDVG----- 111 (345)
T ss_pred CCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE---EEECCCCCCCCCCCCCCC-----
T ss_conf 554677302330677445675346548999998888799999999988626831---675020005432552136-----
Q ss_pred CCCC-CCCCCCHHHHHHHHHCCCCCHHHHHHHHH--HCCCCCH--HHHHHHHHHH---------HHHHHHHCCCCCCCEE
Q ss_conf 4568-87111134577764156322002335564--1564420--4899999999---------8876531026665268
Q gi|254780371|r 169 DKFG-IPIHQIHSLYAYASTLPGVKISGVDMHIG--SQIDQIE--SFHKAFKLLR---------DLTQQLRSNGHNIQHI 234 (431)
Q Consensus 169 sKFG-i~~~~~~~~~~~~~~~~~l~l~GlH~H~G--S~~~~~~--~~~~~~~~~~---------~~~~~l~~~g~~~~~l 234 (431)
=+|- .--+++.++-+.++++ ++++ .+|.| ||+.+|. ....|++.+. .+.++... -.+=.|
T Consensus 112 y~l~~faq~~l~E~G~la~~~-~~Rl---t~HPgQfT~~~SPre~Vv~sAirDlaYHd~~L~~mkl~e~~N~--DaV~~I 185 (345)
T TIGR00629 112 YDLVTFAQKELREIGKLAKTY-QHRL---TFHPGQFTQLTSPRESVVKSAIRDLAYHDELLSAMKLAEQLNK--DAVLII 185 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHH-CCCC---CCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCEEEE
T ss_conf 413661778999999999981-8841---2488611014686556767776548999999986067001166--538887
Q ss_pred EECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 8068730002665455311456555654210245303441
Q gi|254780371|r 235 DVGGGLGIAYHSDHRPPSSSDYASLIHQYFGNLQCKIILE 274 (431)
Q Consensus 235 diGGGf~i~y~~~~~~~~~~~~~~~i~~~~~~~~~~l~~E 274 (431)
-|||-|| ++..+.+.|-+-+++.=...+-+|.+|
T Consensus 186 H~GG~fg------~K~~tl~rF~~Ny~rLsq~~K~RlvLE 219 (345)
T TIGR00629 186 HLGGAFG------NKDTTLARFKKNYKRLSQSIKERLVLE 219 (345)
T ss_pred ECCCCCC------CHHHHHHHHHHHHHHCCHHHHCCCCEE
T ss_conf 4388767------678999999986740446764035110
No 83
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=77.59 E-value=5.7 Score=19.87 Aligned_cols=18 Identities=33% Similarity=0.403 Sum_probs=7.0
Q ss_pred HHHHHCCCCEEEECHHHHH
Q ss_conf 9999739928986899986
Q gi|254780371|r 69 KTLAHLGSGLDIVSEGELR 87 (431)
Q Consensus 69 ~~l~~~G~g~dv~S~~El~ 87 (431)
++|.+.. .+|++-.||.+
T Consensus 113 e~L~~~~-~iD~VvrGEgE 130 (472)
T TIGR03471 113 KTLKQGP-AIDFVCRREFD 130 (472)
T ss_pred HHHHCCC-CEEEEEECCHH
T ss_conf 9984389-72699926469
No 84
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=77.47 E-value=2.6 Score=22.17 Aligned_cols=15 Identities=20% Similarity=0.414 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999998876531
Q gi|254780371|r 211 HKAFKLLRDLTQQLR 225 (431)
Q Consensus 211 ~~~~~~~~~~~~~l~ 225 (431)
..-++.++++.+.++
T Consensus 196 ENR~Rf~lEii~avr 210 (338)
T cd04733 196 ENRARLLLEIYDAIR 210 (338)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 899889999999999
No 85
>PRK08195 4-hydroxy-2-ketovalerate aldolase; Validated
Probab=76.83 E-value=6 Score=19.73 Aligned_cols=28 Identities=7% Similarity=-0.053 Sum_probs=17.6
Q ss_pred CCCCCCHHHHHHHHHCCCC-CHHHHHHHH
Q ss_conf 8711113457776415632-200233556
Q gi|254780371|r 173 IPIHQIHSLYAYASTLPGV-KISGVDMHI 200 (431)
Q Consensus 173 i~~~~~~~~~~~~~~~~~l-~l~GlH~H~ 200 (431)
+.|+++.++++.+++.-+- --.|+|+|-
T Consensus 170 ~~P~~v~~~v~~l~~~l~~~i~igfH~HN 198 (337)
T PRK08195 170 LLPDDVRARVRALRAALKPDTQVGFHGHH 198 (337)
T ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 79999999999999864998549998538
No 86
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=76.19 E-value=6.1 Score=19.69 Aligned_cols=14 Identities=14% Similarity=0.503 Sum_probs=7.4
Q ss_pred HHHCCCCCEEEEEE
Q ss_conf 42102453034410
Q gi|254780371|r 262 QYFGNLQCKIILEP 275 (431)
Q Consensus 262 ~~~~~~~~~l~~EP 275 (431)
+...+.+.+|.+||
T Consensus 130 ~~a~~~Gv~l~iEp 143 (254)
T TIGR03234 130 DALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHCCCEEEEEE
T ss_conf 99996598898863
No 87
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=75.78 E-value=6.4 Score=19.54 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=12.9
Q ss_pred CCHHHHHHHHHHHHCCC-----CCEEEEEECCE
Q ss_conf 31145655565421024-----53034410111
Q gi|254780371|r 251 PSSSDYASLIHQYFGNL-----QCKIILEPGRF 278 (431)
Q Consensus 251 ~~~~~~~~~i~~~~~~~-----~~~l~~EPGR~ 278 (431)
.+.+.|.+.|...+.-. -+.|.+|||..
T Consensus 164 Qt~~~~~~~l~~~~~l~p~hiS~Y~L~ie~~t~ 196 (377)
T PRK08599 164 QTIEDVKESLDKALALDIPHYSLYSLILEPKTV 196 (377)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCH
T ss_conf 989999999999973063634554423358876
No 88
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=75.62 E-value=6.4 Score=19.52 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=7.5
Q ss_pred EEEEECCCCHHHHH
Q ss_conf 99996797023334
Q gi|254780371|r 365 LLYIEKTGAYGAVQ 378 (431)
Q Consensus 365 ~l~i~~~GAY~~s~ 378 (431)
.++|..=|++.|++
T Consensus 447 Vv~i~GDGsf~m~~ 460 (572)
T PRK09259 447 VVAIEGDSAFGFSG 460 (572)
T ss_pred EEEEECCCCCCCCH
T ss_conf 89997584125778
No 89
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase; InterPro: IPR005963 Tryptophan 5-monooxygenase (1.14.16.4 from EC) is a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria. It is the rate-limiting enzyme in the biosynthesis of serotonin in the central nervous system and catalyzes the first step of the synthesis of melatonin in the pineal gland . L-tryptophan + tetrahydropteridine + O2 = 5-hydroxy-L-tryptophan + dihydropteridine + H2O ; GO: 0004510 tryptophan 5-monooxygenase activity, 0042427 serotonin biosynthetic process.
Probab=75.51 E-value=0.68 Score=26.13 Aligned_cols=19 Identities=11% Similarity=0.050 Sum_probs=6.5
Q ss_pred EEEHHHHHHHHHHHHHHCC
Q ss_conf 9779999999999998614
Q gi|254780371|r 31 CYSTTAIEKNYLTFSNAFD 49 (431)
Q Consensus 31 V~d~~~i~~n~~~l~~a~~ 49 (431)
|+.+..-..++.++-+.|+
T Consensus 49 I~~l~~~~~dl~~~l~~f~ 67 (499)
T TIGR01270 49 IFSLKNEVGDLSKALKIFQ 67 (499)
T ss_pred EEEEHHHHHHHHHHHHHCC
T ss_conf 9874001435999998526
No 90
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; InterPro: IPR010137 This entry describes LpxA, an enzyme for the biosynthesis of lipid A, a component of lipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat.; GO: 0008780 acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity, 0008610 lipid biosynthetic process.
Probab=75.37 E-value=6.5 Score=19.47 Aligned_cols=64 Identities=23% Similarity=0.336 Sum_probs=47.9
Q ss_pred EEEEEEECC-CCCCCCEEEEE---------CCCCHHHHHHCCCCCCCCCEEEEEECC-EEEE-------EEEC-CCHHHH
Q ss_conf 656210056-68888899996---------797023334027788986659999889-6899-------9824-898899
Q gi|254780371|r 350 FIALNRKIA-LPRPGDLLYIE---------KTGAYGAVQSGTYNSRLLIPEIMVNGS-QFHI-------IRPR-MTFQEL 410 (431)
Q Consensus 350 ~l~~~~~lp-~l~~GD~l~i~---------~~GAY~~s~~s~fn~~p~p~~v~v~~g-~~~~-------ir~r-et~ed~ 410 (431)
+|+.+..|. ..+.||+..|. ..|.|+|.-+..=-++--||=.|+++. .+++ +||| .+-|++
T Consensus 127 v~aN~a~LAGHV~vgD~a~iGG~~avHQFvRIG~~aMigG~s~v~~DvpPY~~~~G~~~a~l~GlN~vGLrR~Gf~~~~i 206 (257)
T TIGR01852 127 VLANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAVSKDVPPYGLVEGNSRAVLRGLNIVGLRRRGFDREEI 206 (257)
T ss_pred EEECCCEECEEEEECCEEEECCCCCEEEEEEEHHHHHHHHHCCCCCCCCCCEEECCCCCCEEEEEEEEEEECCCCCHHHH
T ss_conf 98136312227998889997789721101330002322120024678776178637875337887013221378798999
Q ss_pred HHC
Q ss_conf 730
Q gi|254780371|r 411 IEL 413 (431)
Q Consensus 411 ~~~ 413 (431)
.+-
T Consensus 207 ~~i 209 (257)
T TIGR01852 207 TAI 209 (257)
T ss_pred HHH
T ss_conf 999
No 91
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; InterPro: IPR013454 Rhamnose is a methyl-pentose sugar which is found as a constituent of pectin within the cell walls of dicotyledonous plants and has also been found in the mucilage of a number of legume plants . RhaD from Rhizobium leguminosarum bv. trifolii is encoded by a gene occurring in a rhamnose utilisation cluster, and is necessary for growth on this compound . This protein is predicted to be a bifunctional NAD-dependent aldolase/dehydrogenase..
Probab=75.27 E-value=5.1 Score=20.22 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=17.2
Q ss_pred CCEEEEECCCCHHHHHHCC-CCCCCCCEE
Q ss_conf 8899996797023334027-788986659
Q gi|254780371|r 363 GDLLYIEKTGAYGAVQSGT-YNSRLLIPE 390 (431)
Q Consensus 363 GD~l~i~~~GAY~~s~~s~-fn~~p~p~~ 390 (431)
+-+.+=.|+=||+.+.++. +.-|...+|
T Consensus 578 Nav~A~kn~~AY~aaKA~~~Hl~R~LA~E 606 (709)
T TIGR02632 578 NAVVAGKNASAYSAAKAAEAHLARCLAAE 606 (709)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 00111788405558999999899999981
No 92
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=75.16 E-value=6.6 Score=19.44 Aligned_cols=193 Identities=17% Similarity=0.113 Sum_probs=89.1
Q ss_pred HHHHHHHHHCCCCCCCE--EECCCCC------C----CHHHHHHHHCCCCCC-CCCCCHHHHHHHHH---HCCCCCCEEE
Q ss_conf 99986522125784312--4447754------2----012444420687233-33220246768774---1133442158
Q gi|254780371|r 83 EGELRRALAAPVPAERI--VFSGVGK------T----IDEIDLALQSGIYCF-NVESESELKTLNQR---AVSLGKKAPI 146 (431)
Q Consensus 83 ~~El~~al~~G~~~~~I--i~~g~~k------~----~~~l~~ai~~gv~~i-~vDs~~el~~l~~~---a~~~~~~~~I 146 (431)
++|-...++..++..++ ++-|.+. + +..++.++++|+.+| ++|.+++.+.+... +++.|..+..
T Consensus 64 PWeRLr~lk~~~~nT~LQMLlRGQNlvGYrhyaDDvVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~ 143 (472)
T COG5016 64 PWERLRELKKAVPNTKLQMLLRGQNLVGYRHYADDVVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQG 143 (472)
T ss_pred HHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 89999999986788588998703751365678458999999999864875797211104646799999999961863689
Q ss_pred EEEEE--CCCCCCCC-----CCC-----CCCCCCCCCCC-CCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 99872--37786744-----333-----22334445688-7111134577764156322002335564156442048999
Q gi|254780371|r 147 AFRVN--PDINANTH-----KKI-----STGKKEDKFGI-PIHQIHSLYAYASTLPGVKISGVDMHIGSQIDQIESFHKA 213 (431)
Q Consensus 147 ~lRin--p~~~~~~~-----~~~-----~tg~~~sKFGi-~~~~~~~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~ 213 (431)
.+-.. |-...... +.. +.+-++ -=|+ ++.++.++++.+++.-++ -+-+|+|.-|+ ...-.|.++
T Consensus 144 ~i~YT~sPvHt~e~yv~~akel~~~g~DSIciKD-maGlltP~~ayelVk~iK~~~~~-pv~lHtH~TsG-~a~m~ylkA 220 (472)
T COG5016 144 TISYTTSPVHTLEYYVELAKELLEMGVDSICIKD-MAGLLTPYEAYELVKAIKKELPV-PVELHTHATSG-MAEMTYLKA 220 (472)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHHCCC-EEEEECCCCCC-HHHHHHHHH
T ss_conf 9874268865289999999999972798788400-00269868899999999974597-06985045556-179999999
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCCCCC----------CCCCCCCCHHH------HHHHHHHHHCCCCCEEEEEECC
Q ss_conf 9999988765310266652688068730002----------66545531145------6555654210245303441011
Q gi|254780371|r 214 FKLLRDLTQQLRSNGHNIQHIDVGGGLGIAY----------HSDHRPPSSSD------YASLIHQYFGNLQCKIILEPGR 277 (431)
Q Consensus 214 ~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y----------~~~~~~~~~~~------~~~~i~~~~~~~~~~l~~EPGR 277 (431)
++.-.+..+.. .=.+-||.+-|- .+-+...+++. |+..+++.+ . .+.++-
T Consensus 221 vEAGvD~iDTA--------isp~S~gtsqP~tEtmv~aL~gt~yDtgld~~~l~~~~~yf~~vrkkY-----~-~~~~~~ 286 (472)
T COG5016 221 VEAGVDGIDTA--------ISPLSGGTSQPATETMVAALRGTGYDTGLDLELLEEIAEYFREVRKKY-----K-GLLEPQ 286 (472)
T ss_pred HHHCCCHHHHH--------HCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH-----H-HCCCCC
T ss_conf 98176422210--------045557888995899999962799876536999999999999999987-----5-326840
Q ss_pred EECCCCCEEEEEEEE
Q ss_conf 120366325888764
Q gi|254780371|r 278 FLVADVGILVTKVIS 292 (431)
Q Consensus 278 ~lva~ag~ll~~V~~ 292 (431)
+...++-+++.+|=+
T Consensus 287 ~~~~d~~ili~qvPG 301 (472)
T COG5016 287 AKGVDPRILIYQVPG 301 (472)
T ss_pred CCCCCCCCEEEECCH
T ss_conf 147887506763771
No 93
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU; InterPro: IPR014088 Members of this protein family include S-adenosylmethionine-dependent C-20 methyltransferase (BchU), part of the pathway of bacteriochlorophyll c production in photosynthetic green sulphur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produce bacteriochlorophyll d..
Probab=74.18 E-value=6.8 Score=19.35 Aligned_cols=33 Identities=36% Similarity=0.651 Sum_probs=24.5
Q ss_pred CCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 5268806873000266545531145655565421024530344101
Q gi|254780371|r 231 IQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQYFGNLQCKIILEPG 276 (431)
Q Consensus 231 ~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~~~~~~~~~l~~EPG 276 (431)
=+.||+|||.| +.++++++.|.+++.+|+==||
T Consensus 151 ~~lIDVGGGIG-------------DI~AAl~~~FP~L~~T~~NLP~ 183 (306)
T TIGR02716 151 KKLIDVGGGIG-------------DIAAALLKAFPELDVTLLNLPS 183 (306)
T ss_pred CEEEECCCCHH-------------HHHHHHHHHCCCCCEEEECCCC
T ss_conf 25433388877-------------8999999737752323120540
No 94
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit; InterPro: IPR005809 There are four different enzymes that share a similar catalytic mechanism which involves the phosphorylation by ATP (or GTP) of a specific histidine residue in the active site. These enzymes are: ATP citrate-lyase (4.1.3.8 from EC) , the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA in many tissues, catalyzes the formation of acetyl-CoA and oxaloacetate from citrate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. ATP-citrate lyase is a tetramer of identical subunits; Succinyl-CoA ligase (GDP-forming) (6.2.1.4 from EC) is a mitochondrial enzyme that catalyzes the substrate level phosphorylation step of the tricarboxylic acid cycle: the formation of succinyl-CoA from succinate with a concomitant hydrolysis of GTP to GDP and phosphate. This enzyme is a dimer composed of an alpha and a beta subunits; Succinyl-CoA ligase (ADP-forming) (6.2.1.5 from EC) is a bacterial enzyme that during aerobic metabolism functions in the citric acid cycle, coupling the hydrolysis of succinyl-CoA to the synthesis of ATP. It can also function in the other direction for anabolic purposes. This enzyme is a tetramer composed of two alpha and two beta subunits; and Malate-CoA ligase (6.2.1.9 from EC) (malyl-CoA synthetase) , is a bacterial enzyme that forms malyl-CoA from malate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. Malate-CoA ligase is composed of two different subunits. This entry corresponds to a conserved region located in the first half of ATP citrate lyase and in the beta subunits of succinyl-CoA ligases and malate-CoA ligase. ; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=73.95 E-value=5.2 Score=20.16 Aligned_cols=30 Identities=10% Similarity=0.061 Sum_probs=19.3
Q ss_pred CCHHHHHHHCCCCE----EEEEHHHHHHHHHHHH
Q ss_conf 42999999749978----9977999999999999
Q gi|254780371|r 16 VSLEKLAHVVQTPF----YCYSTTAIEKNYLTFS 45 (431)
Q Consensus 16 ~~l~~La~~~gTP~----yV~d~~~i~~n~~~l~ 45 (431)
...++|.++||=|. -+-+++.++.-+.++.
T Consensus 6 YqAK~if~~YGiPvp~g~v~~s~~e~~~~~~~~g 39 (389)
T TIGR01016 6 YQAKEIFAKYGIPVPEGEVATSVEEVEEIAEELG 39 (389)
T ss_pred HHHHHHHHHCCCCCCCCCEEECHHHHHHHHHHCC
T ss_conf 5589999847896788600416789999999707
No 95
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=73.48 E-value=6.5 Score=19.48 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=7.1
Q ss_pred CEEEECHHHHHHHHH
Q ss_conf 289868999865221
Q gi|254780371|r 77 GLDIVSEGELRRALA 91 (431)
Q Consensus 77 g~dv~S~~El~~al~ 91 (431)
|+-+.|...++..++
T Consensus 43 giR~~~~~dI~aIk~ 57 (219)
T cd04729 43 GIRANGVEDIRAIRA 57 (219)
T ss_pred EEEECCHHHHHHHHH
T ss_conf 998089889999983
No 96
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=73.24 E-value=7.3 Score=19.13 Aligned_cols=13 Identities=23% Similarity=0.358 Sum_probs=6.0
Q ss_pred CCHHHHHHHHCCC
Q ss_conf 2012444420687
Q gi|254780371|r 107 TIDEIDLALQSGI 119 (431)
Q Consensus 107 ~~~~l~~ai~~gv 119 (431)
+-.||..|.+++.
T Consensus 81 ~~~EL~Ta~~~~l 93 (177)
T cd02010 81 NSQELETAVRLKI 93 (177)
T ss_pred CCHHHHHHHHHCC
T ss_conf 6668889997288
No 97
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=72.67 E-value=7.6 Score=19.04 Aligned_cols=28 Identities=32% Similarity=0.331 Sum_probs=15.8
Q ss_pred HHHHHHHCCCCEEEE---CHHHHHHHHHCCC
Q ss_conf 999999739928986---8999865221257
Q gi|254780371|r 67 VIKTLAHLGSGLDIV---SEGELRRALAAPV 94 (431)
Q Consensus 67 il~~l~~~G~g~dv~---S~~El~~al~~G~ 94 (431)
+.+.+.+.|.--|++ |.||+-.+-.+|.
T Consensus 72 l~~~l~~~Gi~Pd~v~GhSlGE~aAl~aaG~ 102 (298)
T smart00827 72 LARLWRSWGVRPDAVVGHSLGEIAAAYVAGV 102 (298)
T ss_pred HHHHHHHCCCCCCEEEECCHHHHHHHHHCCC
T ss_conf 9999998599877786557989999998499
No 98
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=72.43 E-value=7.6 Score=19.00 Aligned_cols=179 Identities=20% Similarity=0.214 Sum_probs=92.9
Q ss_pred CCCC--EEECCEEEECCCCHHHHHHHCCCC-------EEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHH
Q ss_conf 9871--666885898784299999974997-------8997799999999999986144797899964107999999999
Q gi|254780371|r 1 MSAF--KYFEGSLHAENVSLEKLAHVVQTP-------FYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTL 71 (431)
Q Consensus 1 m~~~--~~~~~~l~i~~~~l~~La~~~gTP-------~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l 71 (431)
|+.| +.+++.|-.||.-=..| .++|-| +.+-+++.|++=.+++-+| +..+ +.||...+--..|
T Consensus 1 m~~~le~L~~~vLi~DGAmGT~L-~~~G~~~~~~~E~lNl~~Pe~V~~IH~~Yi~A----GAdv---I~TNTFgAn~~~L 72 (608)
T PRK08645 1 MMKFLERLKENVLIADGAMGTLL-YSRGVFLDTCFEELNLSHPELILRIHREYIEA----GADV---IQTNTYGANRIKL 72 (608)
T ss_pred CHHHHHHHCCCCEEEECHHHHHH-HHCCCCCCCCCHHHHCCCHHHHHHHHHHHHHH----CCCE---EECCCCCCCHHHH
T ss_conf 94789997089189977888999-87799999996798738869999999999996----1999---9817871679999
Q ss_pred HHCCCCEEEECHH--HHHHHHHCCCCCCCEEEC--CCCC--------CCHH--------HHHHHHCCCCCCCCCCCHHHH
Q ss_conf 9739928986899--986522125784312444--7754--------2012--------444420687233332202467
Q gi|254780371|r 72 AHLGSGLDIVSEG--ELRRALAAPVPAERIVFS--GVGK--------TIDE--------IDLALQSGIYCFNVESESELK 131 (431)
Q Consensus 72 ~~~G~g~dv~S~~--El~~al~~G~~~~~Ii~~--g~~k--------~~~~--------l~~ai~~gv~~i~vDs~~el~ 131 (431)
.+.|..-.+...+ =+++|+++--..+..+.. ||.. +.++ ++..++.|+..|-++....++
T Consensus 73 ~~~gle~~v~eIN~aav~lAreAa~g~~~~VAGsIGP~~~~~~~~~~~~~e~~~~f~eQ~~~L~e~GvD~illET~~dl~ 152 (608)
T PRK08645 73 ARYGLEDKVKEINQAAVRLAKEAAEGKDTYILGTIGPIRGDGPQGDLSLEEILEEFREQIDALLEEGVDGLLLETFYDLE 152 (608)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEHHCCHH
T ss_conf 87384889999999999999998179984999953887889999999999999999999999975799899986305999
Q ss_pred HHHH---HHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf 6877---41133442158998723778674433322334445688711113457776415632200233556415
Q gi|254780371|r 132 TLNQ---RAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYASTLPGVKISGVDMHIGSQ 203 (431)
Q Consensus 132 ~l~~---~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~~~~~~l~l~GlH~H~GS~ 203 (431)
.+.. .+++. ...+|.+-+..+ ..| .+..|.+++++ +..+... +...+|+.|+.|..
T Consensus 153 E~~~Al~aar~~-~~lPvi~s~t~~---------~~G--~t~~G~~~~~a---~~~l~~~-gad~VG~NC~~GP~ 211 (608)
T PRK08645 153 ELLEALKAARKK-TDLPIIAQVAFH---------EDG--VTQNGTSLEEA---LKQLVAL-GADVVGLNCGLGPY 211 (608)
T ss_pred HHHHHHHHHHHH-CCCCEEEEEEEC---------CCC--CCCCCCCHHHH---HHHHHCC-CCCEEEECCCCCHH
T ss_conf 999999999975-699799999988---------998--08999979999---9998628-99889887978999
No 99
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=72.10 E-value=7.8 Score=18.95 Aligned_cols=40 Identities=13% Similarity=0.042 Sum_probs=18.7
Q ss_pred CCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 711113457776415632200233556415644204899999
Q gi|254780371|r 174 PIHQIHSLYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFK 215 (431)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~ 215 (431)
.+..+.++++.+++..++. .-+|+|-.++ .....+.++++
T Consensus 190 ~P~~a~~LV~~lK~~~~iP-I~~HtH~t~G-la~a~~laAie 229 (468)
T PRK12581 190 TPKAAKELVSGIKAMTNLP-LIVHTHATSG-ISQMTYLAAVE 229 (468)
T ss_pred CHHHHHHHHHHHHHCCCCC-EEEEECCCCC-HHHHHHHHHHH
T ss_conf 8899999999998367986-5998258875-49999999998
No 100
>KOG4127 consensus
Probab=71.86 E-value=7.9 Score=18.91 Aligned_cols=80 Identities=21% Similarity=0.294 Sum_probs=40.0
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC-CCCCCCEEEECCCC-CCCCCCCCCCCCHHHH
Q ss_conf 345777641563220023355641564420489999999988765310-26665268806873-0002665455311456
Q gi|254780371|r 179 HSLYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRS-NGHNIQHIDVGGGL-GIAYHSDHRPPSSSDY 256 (431)
Q Consensus 179 ~~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ldiGGGf-~i~y~~~~~~~~~~~~ 256 (431)
.++++.+++-.|+-++-+..+.-| |.+.... ..+.+.+..+++ .| ++.|-+|||| ||++.+... .|...|
T Consensus 288 DdVL~llk~NgGvVMVnfy~~~is-c~~~A~v----~~v~~Hi~hIr~VaG--~~hIGlGg~yDGi~~~PkGL-EDVSkY 359 (419)
T KOG4127 288 DDVLQLLKENGGVVMVNFYPGFIS-CSDRATV----SDVADHINHIRAVAG--IDHIGLGGDYDGIPRVPKGL-EDVSKY 359 (419)
T ss_pred HHHHHHHHHCCCEEEEEEECCCCC-CCCCCCH----HHHHHHHHHHHHHHC--CCEEECCCCCCCCCCCCCCH-HHHHHH
T ss_conf 899998753497899984201146-7875619----999999999998606--32343267767767788552-222110
Q ss_pred HHHHHHHHCC
Q ss_conf 5556542102
Q gi|254780371|r 257 ASLIHQYFGN 266 (431)
Q Consensus 257 ~~~i~~~~~~ 266 (431)
...+++.+.+
T Consensus 360 P~LiaeLl~r 369 (419)
T KOG4127 360 PDLIAELLER 369 (419)
T ss_pred HHHHHHHHHC
T ss_conf 8999999846
No 101
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=71.81 E-value=6.1 Score=19.69 Aligned_cols=19 Identities=16% Similarity=0.095 Sum_probs=11.9
Q ss_pred ECCEEEEEEECCCHHHHHH
Q ss_conf 8896899982489889973
Q gi|254780371|r 394 NGSQFHIIRPRMTFQELIE 412 (431)
Q Consensus 394 ~~g~~~~ir~ret~ed~~~ 412 (431)
.+|+.+-||..-+..|+=+
T Consensus 327 ~~Gr~~eIr~ci~~~~~~~ 345 (353)
T cd04735 327 KEGREDEINLEIDPDDLEE 345 (353)
T ss_pred HCCCHHHHHHCCCHHHHHH
T ss_conf 8589523033389768986
No 102
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=70.65 E-value=7.3 Score=19.13 Aligned_cols=41 Identities=15% Similarity=0.248 Sum_probs=20.1
Q ss_pred EEEEECCCCHHHHHHC--CCCCCCCCEEEEE-ECCEEEEEEECC
Q ss_conf 9999679702333402--7788986659999-889689998248
Q gi|254780371|r 365 LLYIEKTGAYGAVQSG--TYNSRLLIPEIMV-NGSQFHIIRPRM 405 (431)
Q Consensus 365 ~l~i~~~GAY~~s~~s--~fn~~p~p~~v~v-~~g~~~~ir~re 405 (431)
.++|..=|++.|+..- .--.+..|..++| +|+....||.-+
T Consensus 423 ~v~i~GDG~f~m~~~EL~Tavr~~lpi~ivV~NN~~yg~ir~~q 466 (535)
T TIGR03394 423 ILTLVGDGAFQMTGWELGNCRRLGIDPIVILFNNASWEMLRVFQ 466 (535)
T ss_pred EEEEEECCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHEECC
T ss_conf 69999471676059999999993999889999899423212013
No 103
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=69.95 E-value=8.6 Score=18.64 Aligned_cols=33 Identities=21% Similarity=0.512 Sum_probs=15.7
Q ss_pred CCCCCCHHHHHHHHHHC---CCCCCEEEEEEEECCC
Q ss_conf 33322024676877411---3344215899872377
Q gi|254780371|r 122 FNVESESELKTLNQRAV---SLGKKAPIAFRVNPDI 154 (431)
Q Consensus 122 i~vDs~~el~~l~~~a~---~~~~~~~I~lRinp~~ 154 (431)
..+.+.+++..+.+.|- ..+++.+|.|-+-.++
T Consensus 141 ~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 176 (571)
T PRK07710 141 YQVRKASDLPRIIKEAFHIATTGRPGPVVIDLPKDM 176 (571)
T ss_pred EEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCH
T ss_conf 551899999999999999971179972899805524
No 104
>pfam10113 Fibrillarin_2 Fibrillarin-like archaeal protein. Members of this family of proteins include archaeal fibrillarin homologs.
Probab=69.83 E-value=8.7 Score=18.62 Aligned_cols=88 Identities=14% Similarity=0.316 Sum_probs=50.7
Q ss_pred CEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 21589987237786744333223344456887111134577764156322002335564156442048999999998876
Q gi|254780371|r 143 KAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQ 222 (431)
Q Consensus 143 ~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~ 222 (431)
...|++-+.+..+... .+.|.+|+.++.+.++++ |--+.|| ||+|-+. .+.+.-+..-.
T Consensus 185 sSsVcvNv~~eQg~e~------------HaApl~Eme~Va~~A~k~-gkGvEaI-~hiGDGy------DdLI~G~~a~~- 243 (505)
T pfam10113 185 ASSVCVNVTEEQGAEA------------HAAPLDEMKEVAETARKY-GKGVEAI-FHVGDGY------DDLITGLKAAL- 243 (505)
T ss_pred HCEEEEEEECCCCCCC------------CCCCHHHHHHHHHHHHHH-CCCCEEE-EEECCCH------HHHHHHHHHHH-
T ss_conf 3405797202467755------------678879999999999984-8783489-9714774------88999999876-
Q ss_pred HHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 531026665268806873000266545531145655565
Q gi|254780371|r 223 QLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIH 261 (431)
Q Consensus 223 ~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~ 261 (431)
...++++=+-|| ||... .-.++.|++++.
T Consensus 244 -----dl~vDvfVvEGg---PFNra--kdrl~aFakaVa 272 (505)
T pfam10113 244 -----DLDVDVFVVEGG---PFNRA--KDRLKAFARAVA 272 (505)
T ss_pred -----HCCCCEEEEECC---CCCCC--CCHHHHHHHHHH
T ss_conf -----158758998078---76544--336899998888
No 105
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase; InterPro: IPR004558 This family represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. HemN catalyses the anaerobic transformation of coproporhyrinogen-III into protoporphyrinogen-IX during porphyrin biosynthesis. Several species, including Escherichia coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity, IPR004559 from INTERPRO. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterised protein.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin biosynthetic process, 0005737 cytoplasm.
Probab=68.22 E-value=9.4 Score=18.40 Aligned_cols=48 Identities=29% Similarity=0.419 Sum_probs=28.2
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHCCC--CCCEEEEEEECCC---CHHHHHHHHHCCC
Q ss_conf 9978997799999999999986144--7978999641079---9999999997399
Q gi|254780371|r 26 QTPFYCYSTTAIEKNYLTFSNAFDG--MDTMVCYALKANS---NQAVIKTLAHLGS 76 (431)
Q Consensus 26 gTP~yV~d~~~i~~n~~~l~~a~~~--~~~~i~yAvKaN~---~~~il~~l~~~G~ 76 (431)
|||-| ++..+|..=.+.++++|+. -+.+| |+=-|| ....+++|.+.|.
T Consensus 113 GTP~Y-L~~~Q~~~l~~~i~~~F~nf~~daEi--SiEidPR~~~~e~~~~L~~~GF 165 (462)
T TIGR00538 113 GTPTY-LSPEQIEELMKEIREAFPNFSEDAEI--SIEIDPRYLTKEVIKALRDEGF 165 (462)
T ss_pred CCCCC-CCHHHHHHHHHHHHHHHHHHCCCCEE--EEEECCCCCCHHHHHHHHHCCC
T ss_conf 98333-78899999999999873201158447--7652374137889999997589
No 106
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=66.99 E-value=6.3 Score=19.59 Aligned_cols=14 Identities=14% Similarity=0.304 Sum_probs=7.0
Q ss_pred EEEEEE-CCEEEEEE
Q ss_conf 599998-89689998
Q gi|254780371|r 389 PEIMVN-GSQFHIIR 402 (431)
Q Consensus 389 ~~v~v~-~g~~~~ir 402 (431)
.++.|+ +|+...|+
T Consensus 468 ~e~~Vev~Gk~~~Vk 482 (580)
T PRK09282 468 EEYTVEVDGEAYVVK 482 (580)
T ss_pred EEEEEEECCEEEEEE
T ss_conf 599999999999999
No 107
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=66.96 E-value=5.8 Score=19.81 Aligned_cols=15 Identities=27% Similarity=0.160 Sum_probs=9.3
Q ss_pred EEECCCCCCCCCCCC
Q ss_conf 880687300026654
Q gi|254780371|r 234 IDVGGGLGIAYHSDH 248 (431)
Q Consensus 234 ldiGGGf~i~y~~~~ 248 (431)
+-.|||.+-.+.-.+
T Consensus 144 V~~GGg~nHR~gLsD 158 (284)
T PRK06096 144 ILAAGGLIHRAGCAE 158 (284)
T ss_pred HHHCCCCCCCCCCCC
T ss_conf 997593044688763
No 108
>KOG2263 consensus
Probab=66.81 E-value=9.7 Score=18.30 Aligned_cols=83 Identities=20% Similarity=0.374 Sum_probs=50.0
Q ss_pred CCCCEEEEEHH-----HHHHHHHHHHHHCCCCCCEE--EEEE-ECCCCHHHHHHHH-HCCCCEEEECHHHHHHHHHCCCC
Q ss_conf 49978997799-----99999999998614479789--9964-1079999999999-73992898689998652212578
Q gi|254780371|r 25 VQTPFYCYSTT-----AIEKNYLTFSNAFDGMDTMV--CYAL-KANSNQAVIKTLA-HLGSGLDIVSEGELRRALAAPVP 95 (431)
Q Consensus 25 ~gTP~yV~d~~-----~i~~n~~~l~~a~~~~~~~i--~yAv-KaN~~~~il~~l~-~~G~g~dv~S~~El~~al~~G~~ 95 (431)
++-|++|.|++ .+...|..|-..++..+..+ ||+- -+| ....|+-+. -.|.|||.+-.-|-.--.+++|+
T Consensus 206 iDEPilvmDL~~~~l~a~k~AY~~l~~~~~~~~v~l~TYF~~v~~~-a~~~lk~L~~v~~~~~D~VR~~e~lD~~~a~~~ 284 (765)
T KOG2263 206 IDEPILVMDLPGEKLQAFKGAYAELESTLSGLNVLLATYFADVPAE-AYKTLKSLKGVTAFGFDLVRGPETLDLVKAGFP 284 (765)
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEHHHCCCCHH-HHHHHHCCCCEEEEEEEEEECHHHHHHHHHCCC
T ss_conf 2783588608578999999999998753265324610032247877-899873786401442356416556779986088
Q ss_pred CCCEEECCCCCCC
Q ss_conf 4312444775420
Q gi|254780371|r 96 AERIVFSGVGKTI 108 (431)
Q Consensus 96 ~~~Ii~~g~~k~~ 108 (431)
..+++|.|.+-.+
T Consensus 285 ~~k~l~~GvVdGR 297 (765)
T KOG2263 285 EGKYLFAGVVDGR 297 (765)
T ss_pred CCCEEEEEEECCC
T ss_conf 8846999874463
No 109
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=65.69 E-value=10 Score=18.07 Aligned_cols=36 Identities=14% Similarity=0.313 Sum_probs=18.2
Q ss_pred EEEEECCCCHHHHHH-----CCCCCCCCCEEEEE-ECCEEEEEEE
Q ss_conf 999967970233340-----27788986659999-8896899982
Q gi|254780371|r 365 LLYIEKTGAYGAVQS-----GTYNSRLLIPEIMV-NGSQFHIIRP 403 (431)
Q Consensus 365 ~l~i~~~GAY~~s~~-----s~fn~~p~p~~v~v-~~g~~~~ir~ 403 (431)
.++|..=|+..|++. .+++ .|..++| +|+....||.
T Consensus 429 Vv~i~GDG~f~m~~~EL~Tavr~~---lpv~ivV~NN~~~g~i~~ 470 (578)
T PRK06546 429 VISMSGDGGLSMLMGELLTVALHD---LPVKVVVFNNSSLGMVKL 470 (578)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHC---CCCEEEEEECCHHHHHHH
T ss_conf 899989408887699999999978---897899997843579999
No 110
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=65.50 E-value=11 Score=18.05 Aligned_cols=15 Identities=7% Similarity=0.259 Sum_probs=7.7
Q ss_pred CEEEEECCCCHHHHH
Q ss_conf 899996797023334
Q gi|254780371|r 364 DLLYIEKTGAYGAVQ 378 (431)
Q Consensus 364 D~l~i~~~GAY~~s~ 378 (431)
..++|..=|++.|++
T Consensus 439 ~Vv~i~GDGsf~m~~ 453 (586)
T PRK06276 439 NVIAVTGDGGFLMNS 453 (586)
T ss_pred CEEEEECCHHHHHHH
T ss_conf 689998856875509
No 111
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=64.78 E-value=11 Score=17.96 Aligned_cols=15 Identities=13% Similarity=0.273 Sum_probs=5.5
Q ss_pred HHHHHHCCCCCCCCC
Q ss_conf 444420687233332
Q gi|254780371|r 111 IDLALQSGIYCFNVE 125 (431)
Q Consensus 111 l~~ai~~gv~~i~vD 125 (431)
....++.|+.+|.+|
T Consensus 81 v~~l~~aGadiIA~D 95 (222)
T PRK01130 81 VDALAAAGADIIALD 95 (222)
T ss_pred HHHHHHCCCCEEEEE
T ss_conf 999998699999984
No 112
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=63.85 E-value=11 Score=17.85 Aligned_cols=177 Identities=16% Similarity=0.197 Sum_probs=70.3
Q ss_pred EEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCEEECCCCCCCHHH
Q ss_conf 77999999999999861447978999641079999999999739928986899986522125784312444775420124
Q gi|254780371|r 32 YSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGVGKTIDEI 111 (431)
Q Consensus 32 ~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~S~~El~~al~~G~~~~~Ii~~g~~k~~~~l 111 (431)
++.+.|++.+..+.. -+.|. +++.+-= +.|+.+|..+..+....... ..... ...-
T Consensus 14 ~s~~~ik~~ID~Ma~--~KlN~-lH~HLtD-----------dqgw~~e~~~~~~~~~~~~~-~~~~~---------~~~~ 69 (326)
T cd06564 14 YSMDFLKDIIKTMSW--YKMND-LQLHLND-----------NLIFNLDDMSTTVNNATYAS-DDVKS---------GNNY 69 (326)
T ss_pred CCHHHHHHHHHHHHH--CCCCE-EEEEEEC-----------CCCCCCCCCCCCCCCCCCCC-CCCCC---------CCCC
T ss_conf 589999999999998--09987-8888867-----------98542256663332333334-45566---------6556
Q ss_pred HHHH-HCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 4442-068723333220246768774113344215899872377867443332233444568871111345777641563
Q gi|254780371|r 112 DLAL-QSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYASTLPG 190 (431)
Q Consensus 112 ~~ai-~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~~~~~~ 190 (431)
..+. ..|. . |.+|++.|.+.|++. +|||=|+++...|..- .++.+|.
T Consensus 70 ~~~~~~~g~--Y---T~~di~eiv~YA~~r------gI~VIPEID~PGH~~a---------------------~~~~~pe 117 (326)
T cd06564 70 YNLTANDGY--Y---TKEEFKELIAYAKDR------GVNIIPEIDSPGHSLA---------------------FTKAMPE 117 (326)
T ss_pred CCCCCCCCC--C---CHHHHHHHHHHHHHC------CCEEEECCCCCHHHHH---------------------HHHHCHH
T ss_conf 787788870--6---899999999999984------9989863678337899---------------------9985956
Q ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC-CCEEEECCCCCCCCCCC-CCCCCHHHHHHHHHHHHCCCC
Q ss_conf 2200233556415644204899999999887653102666-52688068730002665-455311456555654210245
Q gi|254780371|r 191 VKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHN-IQHIDVGGGLGIAYHSD-HRPPSSSDYASLIHQYFGNLQ 268 (431)
Q Consensus 191 l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~-~~~ldiGGGf~i~y~~~-~~~~~~~~~~~~i~~~~~~~~ 268 (431)
+...+-......+..++.. .++.+-+.+++.++.+.... -+++.|||== +... ...-.+..|.+.+.+.++..+
T Consensus 118 l~~~~~~~~~~~~~ld~~~-~~t~~fl~~v~~Ev~~lF~~~~~yiHiGGDE---~~~~~~~~~~~~~f~~~~~~~v~~~g 193 (326)
T cd06564 118 LGLKNPFSKYDKDTLDISN-PEAVKFVKALFDEYLDGFNPKSDTVHIGADE---YAGDAGYAEAFRAYVNDLAKYVKDKG 193 (326)
T ss_pred HCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHCCCCCCEEEECCCC---CCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 3478877888877568998-7699999999999998667878889863113---88889879999999999999999869
No 113
>pfam00351 Biopterin_H Biopterin-dependent aromatic amino acid hydroxylase. This family includes phenylalanine-4-hydroxylase, the phenylketonuria disease protein.
Probab=62.89 E-value=4.8 Score=20.38 Aligned_cols=10 Identities=30% Similarity=0.554 Sum_probs=3.9
Q ss_pred CCHHHHHHHH
Q ss_conf 3114565556
Q gi|254780371|r 251 PSSSDYASLI 260 (431)
Q Consensus 251 ~~~~~~~~~i 260 (431)
+.+.+|.+.+
T Consensus 179 p~fA~f~q~~ 188 (309)
T pfam00351 179 PSFAQFSQEI 188 (309)
T ss_pred HHHHHHHHHH
T ss_conf 7899999999
No 114
>PRK08611 pyruvate oxidase; Provisional
Probab=62.49 E-value=12 Score=17.68 Aligned_cols=38 Identities=24% Similarity=0.384 Sum_probs=21.5
Q ss_pred CEEEEECCCCHHHHHHC-----CCCCCCCCEEEEE-ECCEEEEEEEC
Q ss_conf 89999679702333402-----7788986659999-88968999824
Q gi|254780371|r 364 DLLYIEKTGAYGAVQSG-----TYNSRLLIPEIMV-NGSQFHIIRPR 404 (431)
Q Consensus 364 D~l~i~~~GAY~~s~~s-----~fn~~p~p~~v~v-~~g~~~~ir~r 404 (431)
..++|..=|++.|++.. +|| .|..++| +|+...+||..
T Consensus 428 ~Vv~i~GDGsf~mt~qEL~Tavr~~---lpv~ivV~NN~~yg~i~~~ 471 (576)
T PRK08611 428 QAIAICGDGGFSMVMQDFVTAVKYK---LPITVVVLNNQQLAFIKYE 471 (576)
T ss_pred CEEEEECCHHHHHHHHHHHHHHHHC---CCCEEEEEECCCHHHHHHH
T ss_conf 7899983438766599999999978---8978999969821899999
No 115
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase; InterPro: IPR004393 Nicotinate-nucleotide pyrophosphorylase (2.4.2.19 from EC), also known as quinolinate phosphoribosyltransferase (decarboxylating), catalyses the conversion of nicotinate D-ribonucleotide, pyrophosphate and carbon dioxide into pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate. This enzyme is a type II phosphoribosyltransferase which provides the de novo source of nicotinate mononucleotide (NAMN) for NAD biosynthesis in both prokaryotes and eukaryotes , . Structural studies have shown that the active form of this enzyme is a homodimer with an unsual fold , , . The N-terminal forms a mixed alpha/beta domain, while the C-terminal region forms a multi-stranded, open alpha/beta barrel. The active site is found at the C-terminal ends of the beta strands of the alpha/beta barrel, and is bordered by the N-terminal domain of the second subunit of the dimer. It contains several conserved charged residues thought to be important determinants of substrate binding and catalysis. ; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0019363 pyridine nucleotide biosynthetic process.
Probab=61.94 E-value=8.7 Score=18.64 Aligned_cols=93 Identities=15% Similarity=0.227 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHCCCCC--CEEEEEEECCCCHHHHH-HHHHCCCC----EE--------------EECHHHHHHHHHC
Q ss_conf 9999999999998614479--78999641079999999-99973992----89--------------8689998652212
Q gi|254780371|r 34 TTAIEKNYLTFSNAFDGMD--TMVCYALKANSNQAVIK-TLAHLGSG----LD--------------IVSEGELRRALAA 92 (431)
Q Consensus 34 ~~~i~~n~~~l~~a~~~~~--~~i~yAvKaN~~~~il~-~l~~~G~g----~d--------------v~S~~El~~al~~ 92 (431)
..-|-..-+++-+++...+ .+|+=-=||-|..-+++ .....|-| |+ +.|..+.-...+.
T Consensus 102 lSGIAT~Tr~~v~~~~~~~~~~~i~dTRKTTPGLR~~EKyAVr~GGG~nHR~~LsDavmiKDNHi~~~Gs~~~Av~~aR~ 181 (276)
T TIGR00078 102 LSGIATATRKYVEALRGTNPKVRIADTRKTTPGLRLLEKYAVRVGGGDNHRLGLSDAVMIKDNHIAAAGSIEKAVKRARA 181 (276)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEECEEECCCCHHHHHHHHHH
T ss_conf 21899999999999845899338998525787430102313553588578688877389750206606898999999998
Q ss_pred CCCC-CCEEECCCCCCCHHHHHHHHCCCCCCCCCCCH
Q ss_conf 5784-31244477542012444420687233332202
Q gi|254780371|r 93 PVPA-ERIVFSGVGKTIDEIDLALQSGIYCFNVESES 128 (431)
Q Consensus 93 G~~~-~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~ 128 (431)
.++. .+|=. =+-|.|++..|++.|+.+|=+||+.
T Consensus 182 ~~~~~~kiEV--EVenlE~a~eA~~AGADiImLDNm~ 216 (276)
T TIGR00078 182 ALPFAKKIEV--EVENLEEAEEAAEAGADIIMLDNMK 216 (276)
T ss_pred HCCCCCEEEE--EECCHHHHHHHHHCCCCEEECCCCC
T ss_conf 4899807998--6289899999997099599806989
No 116
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II; InterPro: IPR011289 Fructose-1,6-bisphosphate (FBP) aldolases reversibly cleave FBP to two triose phosphates, glycerone phophate and D-glyceraldehyde 3-phosphate. They play a key role in both glycolysis (FBP cleavage) and gluconeogenesis (FBP synthesis). These enzymes can be divide into two classes based on their mode of catalysis. Class I FBP aldolases form a Schiff-base intermediate between glycerone phophate and an active site lysine residue, while the class II enzymes use a divalent cation such as Zn(2+) for catalysis . This entry represents class II FBP aldolases found in Gram-positive bacteria, a variety of Gram-negative baceria, and amitochondriate protists. These enzymes are homotetramers where each momomer forms a TIM barrel fold .; GO: 0004332 fructose-bisphosphate aldolase activity, 0008270 zinc ion binding, 0006096 glycolysis, 0030388 fructose 16-bisphosphate metabolic process.
Probab=60.47 E-value=8 Score=18.88 Aligned_cols=87 Identities=15% Similarity=0.208 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHCC--CCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 4201244442068--72333322024676877411334421589987237786744333223344456887111134577
Q gi|254780371|r 106 KTIDEIDLALQSG--IYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYA 183 (431)
Q Consensus 106 k~~~~l~~ai~~g--v~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~ 183 (431)
+.++-|+.|.+.| |..||+.|++-++.|.+.|.+.. .+|.|- ++-|.-.+. |..+-..|+ +.+..+.+
T Consensus 3 ~~k~~L~~A~~~gYAvGaFN~NNlE~~qAIl~AAee~~--SPVI~q----~SeGA~KY~--GkGd~~~G~--~~~~~mV~ 72 (339)
T TIGR01859 3 NGKEILQKAKKEGYAVGAFNINNLEWTQAILQAAEEER--SPVIVQ----VSEGAIKYM--GKGDATLGY--KVAVAMVK 72 (339)
T ss_pred CHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHC--CCEEEE----HHHHHHHCC--CCCHHHHHH--HHHHHHHH
T ss_conf 48899999864683114201216899999999998736--875531----202787404--853177889--99999999
Q ss_pred HHHHCCCC-CHHHHHHHHHH
Q ss_conf 76415632-20023355641
Q gi|254780371|r 184 YASTLPGV-KISGVDMHIGS 202 (431)
Q Consensus 184 ~~~~~~~l-~l~GlH~H~GS 202 (431)
.+.+.-.+ -.+-||.=.||
T Consensus 73 ~L~E~~~~tVPVaLHLDHG~ 92 (339)
T TIGR01859 73 TLIESMSITVPVALHLDHGS 92 (339)
T ss_pred HHHHHCCCCEEEEEECCCCC
T ss_conf 99986799320686468876
No 117
>pfam00331 Glyco_hydro_10 Glycosyl hydrolase family 10.
Probab=60.21 E-value=12 Score=17.76 Aligned_cols=56 Identities=23% Similarity=0.297 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHCCC--CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC--CCCEEEECCC
Q ss_conf 111345777641563--220023355641564420489999999988765310266--6526880687
Q gi|254780371|r 176 HQIHSLYAYASTLPG--VKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGH--NIQHIDVGGG 239 (431)
Q Consensus 176 ~~~~~~~~~~~~~~~--l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~--~~~~ldiGGG 239 (431)
+...++++.+++. | |+-+|++.|++....+++.+.+.++.+. +.|. .+..+|+...
T Consensus 180 ~~~~~lv~~l~~~-gvpIDgIG~Q~H~~~~~~~~~~i~~~l~~~a-------~lGl~i~ITElDV~~~ 239 (308)
T pfam00331 180 EAIYNLVKDLKAK-GVPIDGIGMQSHLSAGGPSISEIEAALKRFA-------SLGVEVAITELDISGY 239 (308)
T ss_pred HHHHHHHHHHHHC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHH-------HCCCEEEEEEEEECCC
T ss_conf 9999999999977-9986448876660689999999999999999-------6599079977775588
No 118
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=59.73 E-value=13 Score=17.36 Aligned_cols=38 Identities=16% Similarity=0.285 Sum_probs=16.2
Q ss_pred CEEEEECCCCHHHHHHC--CCCCCCCCEEEEE-ECCEEEEE
Q ss_conf 89999679702333402--7788986659999-88968999
Q gi|254780371|r 364 DLLYIEKTGAYGAVQSG--TYNSRLLIPEIMV-NGSQFHII 401 (431)
Q Consensus 364 D~l~i~~~GAY~~s~~s--~fn~~p~p~~v~v-~~g~~~~i 401 (431)
..++|..=|++.|++.- .--.+..|..++| +|+....|
T Consensus 428 ~Vv~i~GDG~f~m~~~EL~Ta~r~~lpv~ivV~NN~~~g~i 468 (574)
T PRK09124 428 QVVSLSGDGGFSMLMGDFLSLVQLKLPVKIVVFNNSVLGFV 468 (574)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH
T ss_conf 48999886288754999999999788958999978167899
No 119
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=59.57 E-value=13 Score=17.35 Aligned_cols=10 Identities=40% Similarity=0.650 Sum_probs=5.2
Q ss_pred EEEEEEEECC
Q ss_conf 1589987237
Q gi|254780371|r 144 APIAFRVNPD 153 (431)
Q Consensus 144 ~~I~lRinp~ 153 (431)
.+|.+-+||+
T Consensus 124 ~EitiE~nP~ 133 (416)
T COG0635 124 AEITIEANPG 133 (416)
T ss_pred CEEEEEECCC
T ss_conf 2799950888
No 120
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=59.44 E-value=13 Score=17.33 Aligned_cols=40 Identities=18% Similarity=0.239 Sum_probs=17.1
Q ss_pred CEEEEECCCCHHHHHHC--CCCCCCCCEEEEE-ECCEEEEEEE
Q ss_conf 89999679702333402--7788986659999-8896899982
Q gi|254780371|r 364 DLLYIEKTGAYGAVQSG--TYNSRLLIPEIMV-NGSQFHIIRP 403 (431)
Q Consensus 364 D~l~i~~~GAY~~s~~s--~fn~~p~p~~v~v-~~g~~~~ir~ 403 (431)
..+++..=|++.++... ..-.+..|..++| +|+...+||.
T Consensus 417 ~vv~i~GDGsf~m~~~EL~Ta~r~~lpv~ivV~NN~~yg~i~~ 459 (549)
T PRK06457 417 QVIAIVGDGGFAMTMMELITAKKYSRPVKIIIYNNSKLGMIKF 459 (549)
T ss_pred CEEEEECCCHHHCCHHHHHHHHHHCCCCEEEEEECCCHHHHHH
T ss_conf 4369966607751489999999958996899997981168999
No 121
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=58.89 E-value=14 Score=17.27 Aligned_cols=29 Identities=17% Similarity=-0.058 Sum_probs=15.1
Q ss_pred CCCCCHHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf 711113457776415632200233556415
Q gi|254780371|r 174 PIHQIHSLYAYASTLPGVKISGVDMHIGSQ 203 (431)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~l~GlH~H~GS~ 203 (431)
.+..+.++++.+++.-++. +.+|+|--++
T Consensus 181 ~P~~~~eLV~aLk~~~~lp-I~~HtH~t~G 209 (463)
T PRK12331 181 TPYVAYELVKCIKENVTVP-LEVHTHATSG 209 (463)
T ss_pred CHHHHHHHHHHHHHHCCCC-EEEEECCCCC
T ss_conf 8899999999999744985-6998368875
No 122
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=58.87 E-value=14 Score=17.27 Aligned_cols=30 Identities=10% Similarity=0.242 Sum_probs=13.9
Q ss_pred CCHHHHHHHHHHHHCCC-----CCEEEEEECCEEC
Q ss_conf 31145655565421024-----5303441011120
Q gi|254780371|r 251 PSSSDYASLIHQYFGNL-----QCKIILEPGRFLV 280 (431)
Q Consensus 251 ~~~~~~~~~i~~~~~~~-----~~~l~~EPGR~lv 280 (431)
.+.+.|...|.+.+.-. -+.|.+|||..+.
T Consensus 168 Qt~~~~~~~l~~~~~l~p~hiS~Y~L~~e~~t~~~ 202 (381)
T PRK09057 168 QTLAAWRAELKEALGLAADHLSLYQLTIEEGTAFY 202 (381)
T ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHH
T ss_conf 98889999999997127774322356644897278
No 123
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=57.85 E-value=14 Score=17.15 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=11.6
Q ss_pred CCCEEEEEEEEEECCCCCEEEEEE
Q ss_conf 776158999810005666656210
Q gi|254780371|r 332 DRLHIHADIVGPICETGDFIALNR 355 (431)
Q Consensus 332 ~~~~~~~~i~G~~C~~~D~l~~~~ 355 (431)
.....+..|+++=-..|.+++..+
T Consensus 354 rGevv~aevV~~Gr~kGEmlavAr 377 (414)
T COG2100 354 RGEVVKAEVVLPGRLKGEMLAVAR 377 (414)
T ss_pred CCCEEEEEEEECCEECCEEEEEEC
T ss_conf 686799999943602225788750
No 124
>PRK07449 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; Validated
Probab=57.58 E-value=14 Score=17.12 Aligned_cols=11 Identities=9% Similarity=0.341 Sum_probs=7.0
Q ss_pred CCCCEEEEEEE
Q ss_conf 34421589987
Q gi|254780371|r 140 LGKKAPIAFRV 150 (431)
Q Consensus 140 ~~~~~~I~lRi 150 (431)
.+++.+|.|-|
T Consensus 163 ~grpGPVhi~i 173 (548)
T PRK07449 163 SAQAGPVHINC 173 (548)
T ss_pred CCCCCCEEEEC
T ss_conf 79999989981
No 125
>pfam02388 FemAB FemAB family. The femAB operon codes for two nearly identical approximately 50-kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan. These proteins are also considered as a factor influencing the level of methicillin resistance.
Probab=57.33 E-value=6 Score=19.72 Aligned_cols=11 Identities=9% Similarity=-0.254 Sum_probs=6.6
Q ss_pred CEEEEEEEEEE
Q ss_conf 61589998100
Q gi|254780371|r 334 LHIHADIVGPI 344 (431)
Q Consensus 334 ~~~~~~i~G~~ 344 (431)
.-..+++.|-.
T Consensus 350 G~~~ydf~Gi~ 360 (407)
T pfam02388 350 GIDRYNFYGIP 360 (407)
T ss_pred CCCEEECCCCC
T ss_conf 99889641888
No 126
>PRK08807 consensus
Probab=56.68 E-value=15 Score=17.03 Aligned_cols=57 Identities=16% Similarity=0.158 Sum_probs=29.4
Q ss_pred HHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-----CCEEEEEECCEECC
Q ss_conf 998876531026665268806873000266545531145655565421024-----53034410111203
Q gi|254780371|r 217 LRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQYFGNL-----QCKIILEPGRFLVA 281 (431)
Q Consensus 217 ~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~~~~~~-----~~~l~~EPGR~lva 281 (431)
+.+..+.+++.|++---+|+==|+| ..+.++|...|.+.+.-. -+.|.+|||..+..
T Consensus 147 ~~~ai~~~r~~gf~nin~DLiyglP--------~Qt~~~~~~~l~~~~~l~p~hiS~Y~L~ie~~t~~~~ 208 (385)
T PRK08807 147 AERAIKLAQDAGYDNFNIDLMYALP--------EQTLLQAEHDLERAFALQPTHLSHYQLTLEPNTVFFA 208 (385)
T ss_pred HHHHHHHHHHCCCCCCCCCEEECCC--------CCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHH
T ss_conf 9999999997499731301032699--------9989999999999855599847898888517835754
No 127
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=56.60 E-value=15 Score=17.02 Aligned_cols=40 Identities=15% Similarity=0.006 Sum_probs=17.0
Q ss_pred CCCCCHHHHHHHHHCC--CCCHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 7111134577764156--32200233556415644204899999
Q gi|254780371|r 174 PIHQIHSLYAYASTLP--GVKISGVDMHIGSQIDQIESFHKAFK 215 (431)
Q Consensus 174 ~~~~~~~~~~~~~~~~--~l~l~GlH~H~GS~~~~~~~~~~~~~ 215 (431)
.+..+.++++.+++.- ++ ..-+|+|-.|+ .....+.++++
T Consensus 182 ~P~~a~~LV~~lk~~~g~d~-pI~~HtH~T~G-~~~~~~l~Aie 223 (499)
T PRK12330 182 KPQPAYDLVKGIKEACGPDT-RVHVHAHATTG-VTLVSLMKAIE 223 (499)
T ss_pred CHHHHHHHHHHHHHHCCCCC-CEEEECCCCCC-HHHHHHHHHHH
T ss_conf 88999999999998638998-37985178874-69999999998
No 128
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=56.08 E-value=15 Score=16.96 Aligned_cols=98 Identities=15% Similarity=0.224 Sum_probs=52.5
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCHHHHH--HH----HHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCC
Q ss_conf 688711113457776415632200233--55----641564420489999999988765310266652688068730002
Q gi|254780371|r 171 FGIPIHQIHSLYAYASTLPGVKISGVD--MH----IGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAY 244 (431)
Q Consensus 171 FGi~~~~~~~~~~~~~~~~~l~l~GlH--~H----~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y 244 (431)
.-++.++..++.+.+.+. |+.+.++. .| +|| .|++...+.++.+.+..+.....| ++.|-+.|+ .+.|
T Consensus 47 l~~~~~~~~~i~~~~~~~-gl~I~s~~~s~~~~~pl~s--~d~~~r~~~le~l~kaI~lA~~LG--i~~I~l~g~-dv~~ 120 (284)
T PRK13210 47 LDWSKEERLELVKAIYET-GVRIPSMCLSAHRRFPFGS--RDEATRERALEIMKKAIRLAQDLG--IRTIQLAGY-DVYY 120 (284)
T ss_pred CCCCHHHHHHHHHHHHHC-CCEEEEEECCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHCC--CCEEEECCC-CCCC
T ss_conf 899989999999999982-9835664155666899999--898999999999999999999809--978996887-6666
Q ss_pred CCCCCCCCHHHHHHHHHH---HHCCCCCEEEEEE
Q ss_conf 665455311456555654---2102453034410
Q gi|254780371|r 245 HSDHRPPSSSDYASLIHQ---YFGNLQCKIILEP 275 (431)
Q Consensus 245 ~~~~~~~~~~~~~~~i~~---~~~~~~~~l~~EP 275 (431)
.. ..+.+.+.+.+.+++ ...+.+++|.+|+
T Consensus 121 ~~-~~~~~~~rf~e~l~~~~~~Ae~~gV~L~iE~ 153 (284)
T PRK13210 121 EE-KDEETRQRFIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_conf 86-9889999999999999999998399899995
No 129
>PRK06852 aldolase; Validated
Probab=55.87 E-value=15 Score=16.94 Aligned_cols=137 Identities=13% Similarity=0.149 Sum_probs=73.2
Q ss_pred CCHH-HHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 2012-444420687233332202467687741133442158998723778674433322334445688711113457776
Q gi|254780371|r 107 TIDE-IDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYA 185 (431)
Q Consensus 107 ~~~~-l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~ 185 (431)
.++. ++.|++.|+..+. .++-.|...+++.. +++..|.+|-.-..- +.+...+.|..=.+.+++ ++..
T Consensus 60 DPe~~~~lAi~ag~~a~A----a~lG~l~~~a~~ya-~IP~ilKlN~~~~L~---~~~~~dp~s~~~~sv~~a---~~~~ 128 (303)
T PRK06852 60 DPEHLFRIASKAKIGVFA----TQLGLIARYGMDYK-DIPYLVKLNSKTNLV---KTSQKDPFSNQWLDVDQV---VEFK 128 (303)
T ss_pred CHHHHHHHHHHCCCCEEE----ECHHHHHHHHCCCC-CCCEEEEECCCCCCC---CCCCCCCCHHCCCCHHHH---HHHH
T ss_conf 839999999854986798----43447987640031-697799965756467---766678401010679999---8652
Q ss_pred HHC-CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEE-E-CCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 415-63220023355641564420489999999988765310266652688-0-68730002665455311456555654
Q gi|254780371|r 186 STL-PGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHID-V-GGGLGIAYHSDHRPPSSSDYASLIHQ 262 (431)
Q Consensus 186 ~~~-~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ld-i-GGGf~i~y~~~~~~~~~~~~~~~i~~ 262 (431)
... -|..-+|+|.+.||.. -.+.++.+.+++.+.++.|+..=... - |+.+ .++..+++-.++..+..
T Consensus 129 ~~~~LGa~aVG~TIY~GSe~-----e~~ml~e~~~i~~eA~~~Gl~~VlW~YpRG~~i-----k~e~d~~~iA~aA~~aa 198 (303)
T PRK06852 129 KNSGLNILGVGYTIYLGSEY-----EAEMLSEAAQIIYEAHKHGLVAVLWIYPRGKAV-----KDEKDPHLIAGAAGVAA 198 (303)
T ss_pred HHCCCCCEEEEEEEECCCHH-----HHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCC-----CCCCCHHHHHHHHHHHH
T ss_conf 31158865999998579740-----699999999999999976990899995158767-----89876789999999999
Q ss_pred HH
Q ss_conf 21
Q gi|254780371|r 263 YF 264 (431)
Q Consensus 263 ~~ 264 (431)
.+
T Consensus 199 eL 200 (303)
T PRK06852 199 CL 200 (303)
T ss_pred HH
T ss_conf 86
No 130
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; InterPro: IPR006276 This group represents cobalamin-independent methionine synthase. A family of uncharacterised archaeal proteins having substantial homology to the C-terminal region of this family, are not included in this group, though they are contained in a larger family of vitamin-B12 independent methionine synthase.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process.
Probab=55.79 E-value=15 Score=16.93 Aligned_cols=76 Identities=22% Similarity=0.390 Sum_probs=53.6
Q ss_pred CCCEEEEEH-----HHHHHHHHHHHHHC--CCCCCEE--EEEEECCCCHHHHHHHHHC---CCCEEEECHH-H-HHHHHH
Q ss_conf 997899779-----99999999999861--4479789--9964107999999999973---9928986899-9-865221
Q gi|254780371|r 26 QTPFYCYST-----TAIEKNYLTFSNAF--DGMDTMV--CYALKANSNQAVIKTLAHL---GSGLDIVSEG-E-LRRALA 91 (431)
Q Consensus 26 gTP~yV~d~-----~~i~~n~~~l~~a~--~~~~~~i--~yAvKaN~~~~il~~l~~~---G~g~dv~S~~-E-l~~al~ 91 (431)
+=|+.|+|+ +.+++-|+.|..+. +..+..+ ||. ....-+..+.+. |.|+|-+... + |.....
T Consensus 220 DEP~LV~Dl~~~~~~~~~~~Y~~l~~~~ss~~~~l~l~TYF~----~~~~~l~~~~~lPV~giglDfV~~~~~NL~~~~~ 295 (778)
T TIGR01371 220 DEPALVTDLSKEELALFKEAYTELEEALSSKDLKLLLQTYFD----SVGANLEKLVSLPVKGIGLDFVHGKAQNLLELAK 295 (778)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCC----CHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHH
T ss_conf 385434059889999999999998742102457517882467----7678999997489433543552371013698975
Q ss_pred CCCCCCCEEECCCC
Q ss_conf 25784312444775
Q gi|254780371|r 92 APVPAERIVFSGVG 105 (431)
Q Consensus 92 ~G~~~~~Ii~~g~~ 105 (431)
+||+.+++++.|..
T Consensus 296 ~~~~~dk~L~aGvI 309 (778)
T TIGR01371 296 AGFPEDKVLSAGVI 309 (778)
T ss_pred CCCCCCCEEEEEEE
T ss_conf 25765656887677
No 131
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=55.76 E-value=15 Score=16.93 Aligned_cols=37 Identities=11% Similarity=0.236 Sum_probs=16.7
Q ss_pred CEEEEECCCCHHHHHH-----CCCCCCCCCEEEE-EECCEEEEEEE
Q ss_conf 8999967970233340-----2778898665999-98896899982
Q gi|254780371|r 364 DLLYIEKTGAYGAVQS-----GTYNSRLLIPEIM-VNGSQFHIIRP 403 (431)
Q Consensus 364 D~l~i~~~GAY~~s~~-----s~fn~~p~p~~v~-v~~g~~~~ir~ 403 (431)
..++|..=|++.|+.. .+|+ .|..++ ++|+..-.||.
T Consensus 454 ~Vv~i~GDGsf~mt~qEL~Ta~r~~---Lpv~ivV~NN~~~G~ir~ 496 (615)
T PRK07418 454 QVICIAGDASFLMNIQELGTLAQYG---IPVKTVIINNGWQGMVRQ 496 (615)
T ss_pred CEEEEECCHHHHHHHHHHHHHHHHC---CCCEEEEEECCCCHHHHH
T ss_conf 6899984438766499999999968---996899997984479999
No 132
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=55.70 E-value=15 Score=16.92 Aligned_cols=95 Identities=15% Similarity=0.144 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHCCCCCHHHHHHHH-H---HCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 1113457776415632200233556-4---156-4420489999999988765310266652688068730002665455
Q gi|254780371|r 176 HQIHSLYAYASTLPGVKISGVDMHI-G---SQI-DQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRP 250 (431)
Q Consensus 176 ~~~~~~~~~~~~~~~l~l~GlH~H~-G---S~~-~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~ 250 (431)
+++.++.+.++.+ ++.+.|++--. | +-+ .+...-.+.++.+....+...+.|- ..+-++.|.+....+ ..
T Consensus 47 ~~~~~ik~l~~~~-gl~v~~~~p~~~~~~~~l~~~d~~~R~~~i~~~k~~id~A~~Lga--~~v~v~~~~~~~~~~--~~ 121 (276)
T PRK09856 47 GGIKQIKALAQTY-QMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDMAKEMNA--GYTLISAAHAGYLTP--PN 121 (276)
T ss_pred HHHHHHHHHHHHC-CCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC--CEEEEECCCCCCCCC--HH
T ss_conf 5799999999980-986899553213776533679878989999999999999998499--849993687778889--79
Q ss_pred CCHHHHHHH---HHHHHCCCCCEEEEEE
Q ss_conf 311456555---6542102453034410
Q gi|254780371|r 251 PSSSDYASL---IHQYFGNLQCKIILEP 275 (431)
Q Consensus 251 ~~~~~~~~~---i~~~~~~~~~~l~~EP 275 (431)
..|+.+++. +++..++.+++|.+||
T Consensus 122 ~~w~~~~e~l~~l~~~A~~~Gv~l~lE~ 149 (276)
T PRK09856 122 VIWGRLAENLSELCEYAENIGMDLILEP 149 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 9999999999999999997399899951
No 133
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase; InterPro: IPR004484 This family describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of cobyrinic acid to cobyrinic acid a,c-diamide via the intermediate formation of cobyrinic acid c-monoamide or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation .; GO: 0042242 cobyrinic acid ac-diamide synthase activity, 0009236 cobalamin biosynthetic process.
Probab=55.18 E-value=3.7 Score=21.15 Aligned_cols=233 Identities=15% Similarity=0.188 Sum_probs=125.3
Q ss_pred CCCCHHHHHHHCCCCE-EEEEHHHHHHHHHHHHHHCCC--CCC----EEEEEEECCCCHHHHHHHHHCCC-CEEEEC---
Q ss_conf 7842999999749978-997799999999999986144--797----89996410799999999997399-289868---
Q gi|254780371|r 14 ENVSLEKLAHVVQTPF-YCYSTTAIEKNYLTFSNAFDG--MDT----MVCYALKANSNQAVIKTLAHLGS-GLDIVS--- 82 (431)
Q Consensus 14 ~~~~l~~La~~~gTP~-yV~d~~~i~~n~~~l~~a~~~--~~~----~i~yAvKaN~~~~il~~l~~~G~-g~dv~S--- 82 (431)
|--|..++|+-+..|. +|.|...|.+...++-.-|.. +++ -|+=-||...+...+|...+.=. |+.+--
T Consensus 102 d~gStA~vAk~L~~PvvLv~n~~~L~~saaAiv~Gy~~fdp~V~l~GVILN~V~~~rH~~k~k~A~e~L~Pgi~vlG~~p 181 (464)
T TIGR00379 102 DKGSTASVAKALDAPVVLVVNAKRLSRSAAAIVLGYRSFDPDVKLKGVILNRVGSERHLEKLKTAVEKLAPGIEVLGVIP 181 (464)
T ss_pred CCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 77518899998659889999564033578677641343089831787887310774468999999886368945887773
Q ss_pred H-HHHHHHHHCCCCCCCEEECCCCCC--CHHHHHHHHC-CCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCC
Q ss_conf 9-998652212578431244477542--0124444206-87233332202467687741133442158998723778674
Q gi|254780371|r 83 E-GELRRALAAPVPAERIVFSGVGKT--IDEIDLALQS-GIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANT 158 (431)
Q Consensus 83 ~-~El~~al~~G~~~~~Ii~~g~~k~--~~~l~~ai~~-gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~ 158 (431)
. .|++ ++ +|.+=-=|+-- ++.+....++ +- .++.--++++|.+++.+..+-....--+ ..
T Consensus 182 R~~~l~------~p-~RHLGLVpa~E~l~~~~~~~~~~la~---~~e~~lD~~kl~~i~~~~~~~~~~~~~~---~~--- 245 (464)
T TIGR00379 182 RKEDLK------VP-DRHLGLVPAVERLDEIIQQILDWLAE---VVEKYLDLDKLLEIAEKARELDSEMELL---WE--- 245 (464)
T ss_pred CCCCCC------CC-CCCCCCCCCCCCCCHHHHHHHHHHHH---HHHHHCCHHHHHHHHCCCCCCCCCCCCC---CC---
T ss_conf 675321------47-75465316613531789999999999---9997449779888740678777752101---23---
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC-CCC-CCCEEEE
Q ss_conf 43332233444568871111345777641563220023355641564420489999999988765310-266-6526880
Q gi|254780371|r 159 HKKISTGKKEDKFGIPIHQIHSLYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRS-NGH-NIQHIDV 236 (431)
Q Consensus 159 ~~~~~tg~~~sKFGi~~~~~~~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~-~g~-~~~~ldi 236 (431)
.--.+.-|.|+-.|++..+.= ..+++-|.-.+.. + .++.-+++ .-+ +++.|=|
T Consensus 246 ----~~~~~~~kiava~D~aFnFYY-~dNld~L~~~~a~-------------------l-~ffspL~D~eLPPdvD~lYi 300 (464)
T TIGR00379 246 ----DENKKYVKIAVARDQAFNFYY-QDNLDALEENAAE-------------------L-VFFSPLEDKELPPDVDALYI 300 (464)
T ss_pred ----CCCCCCEEEEEEEECCCCHHH-HHHHHHHHHCCCE-------------------E-EEECCCCCCCCCCCCCEEEE
T ss_conf ----456772378999733214035-7789999747827-------------------9-85177668779712157650
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-CCEEEEEECCEECCCCCEEEEEEEEECCCCCC
Q ss_conf 6873000266545531145655565421024-53034410111203663258887640346897
Q gi|254780371|r 237 GGGLGIAYHSDHRPPSSSDYASLIHQYFGNL-QCKIILEPGRFLVADVGILVTKVISIKKSADK 299 (431)
Q Consensus 237 GGGf~i~y~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~ 299 (431)
||||| |-|++.|.+--+-. .++=++.-|+++-|+||=|-.=-..+.+..+.
T Consensus 301 GGGfP------------ElFae~L~~N~~l~~~i~~f~~~G~P~YGECGGLMYL~~Sl~~~Eg~ 352 (464)
T TIGR00379 301 GGGFP------------ELFAEELEKNEKLRDSIKEFIQQGRPIYGECGGLMYLSESLDNVEGE 352 (464)
T ss_pred CCCCH------------HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCCCE
T ss_conf 78852------------45365334448999999999737883898506044320010158970
No 134
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=54.68 E-value=16 Score=16.81 Aligned_cols=20 Identities=0% Similarity=-0.099 Sum_probs=11.4
Q ss_pred EEEHHHHHHHHHHHHHHCCC
Q ss_conf 97799999999999986144
Q gi|254780371|r 31 CYSTTAIEKNYLTFSNAFDG 50 (431)
Q Consensus 31 V~d~~~i~~n~~~l~~a~~~ 50 (431)
.++.+...+-.+++.+.-+.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~ 53 (447)
T PRK09058 34 PVPAEQLQAVWQRLLQQTLR 53 (447)
T ss_pred CCCHHHHHHHHHHHHHCCCC
T ss_conf 78868999999999835999
No 135
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=54.59 E-value=16 Score=16.80 Aligned_cols=18 Identities=17% Similarity=0.327 Sum_probs=8.9
Q ss_pred HHHHHHHHCCCCCCCCCC
Q ss_conf 124444206872333322
Q gi|254780371|r 109 DEIDLALQSGIYCFNVES 126 (431)
Q Consensus 109 ~~l~~ai~~gv~~i~vDs 126 (431)
+|++...+.|+.+|.+|-
T Consensus 89 keVd~L~~~Ga~IIA~Da 106 (229)
T COG3010 89 KEVDALAEAGADIIAFDA 106 (229)
T ss_pred HHHHHHHHCCCCEEEEEC
T ss_conf 999999977990999625
No 136
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=54.20 E-value=16 Score=16.76 Aligned_cols=40 Identities=13% Similarity=0.312 Sum_probs=18.9
Q ss_pred CEEEEECCCCHHHHHHC--CCCCCCCCEEEEE-ECCEEEEEEE
Q ss_conf 89999679702333402--7788986659999-8896899982
Q gi|254780371|r 364 DLLYIEKTGAYGAVQSG--TYNSRLLIPEIMV-NGSQFHIIRP 403 (431)
Q Consensus 364 D~l~i~~~GAY~~s~~s--~fn~~p~p~~v~v-~~g~~~~ir~ 403 (431)
..+++..=|++.|++.. .--.+..|..++| +|+....||.
T Consensus 421 ~Vv~i~GDGsf~m~~~EL~Ta~r~~lpv~ivV~NN~~~g~ir~ 463 (548)
T PRK08978 421 TVICVSGDGSFMMNVQELGTIKRKQLPVKIVLLDNQRLGMVRQ 463 (548)
T ss_pred CEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHH
T ss_conf 8899989507645299999999958995899996884078999
No 137
>COG1477 ApbE Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=53.77 E-value=12 Score=17.62 Aligned_cols=124 Identities=15% Similarity=0.214 Sum_probs=62.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCC-CCCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEECCEECCC
Q ss_conf 442048999999998876531026665268806873000-26654553114565556542102-4530344101112036
Q gi|254780371|r 205 DQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIA-YHSDHRPPSSSDYASLIHQYFGN-LQCKIILEPGRFLVAD 282 (431)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~-y~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~EPGR~lva~ 282 (431)
.|+....+... +-.+++.+++.|..=-+||+||-+-+- -.++..+ |.-.|.+-... -.+.-++.....-|+.
T Consensus 170 lDLggIAKGy~-vD~~~~~l~~~gi~~~lV~~GG~i~~~G~~~~g~p-----W~IgI~~P~~~~~~~~~ii~l~d~aVaT 243 (337)
T COG1477 170 LDLGGIAKGYA-VDKAAEALEAEGIKSALVNLGGEIRVIGKNPDGKP-----WRIGIQNPFAPRGAVQGIVPLKDGAVAT 243 (337)
T ss_pred ECCCCHHHHHH-HHHHHHHHHHCCCHHEEEECCCCEEEECCCCCCCC-----CEEEEECCCCCCCCEEEEEECCCCEEEC
T ss_conf 75530346589-99999999874861103643760688614899998-----6799738888877605799527966972
Q ss_pred CCEEEEEEEEECCCCCCCCEEECCCCCC-CCCCHHHCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEEC
Q ss_conf 6325888764034689742200553000-11001110246532222346777615899981000566665621005
Q gi|254780371|r 283 VGILVTKVISIKKSADKTFVILDVAMND-FMRPTLYDAYHEINYIVNPAGDRLHIHADIVGPICETGDFIALNRKI 357 (431)
Q Consensus 283 ag~ll~~V~~vK~~~~~~~~~vD~g~~~-~~~p~~~~~~~~i~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~l 357 (431)
+|.+ ++|..+|+...+ .+.|-- -+|+ +.....++|.-+.|+..|-|+...++
T Consensus 244 SG~Y------------~r~~e~dG~ry~HilDP~T---G~P~--------~~~~~sVTVia~~~~~ADalaTal~v 296 (337)
T COG1477 244 SGDY------------ERYFEVDGKRYHHILDPKT---GYPI--------EHDLASVTVIAPSSMDADALATALFV 296 (337)
T ss_pred CCCC------------EEEEEECCEEEEEECCCCC---CCCC--------CCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 5672------------5688978978765508999---9887--------57861699985886007889988874
No 138
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=53.70 E-value=17 Score=16.71 Aligned_cols=56 Identities=14% Similarity=0.196 Sum_probs=26.8
Q ss_pred HHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-----CCEEEEEECCEEC
Q ss_conf 998876531026665268806873000266545531145655565421024-----5303441011120
Q gi|254780371|r 217 LRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQYFGNL-----QCKIILEPGRFLV 280 (431)
Q Consensus 217 ~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~~~~~~-----~~~l~~EPGR~lv 280 (431)
+.+..+.+++.|++---+|+==|+| ..+.+.|.+.|.+.+.-. -+.|.+|||..+-
T Consensus 153 ~~~ai~~~~~~gf~niniDLIyGlP--------gQt~~~~~~~l~~~~~l~p~hiS~Y~L~~e~~T~~~ 213 (399)
T PRK07379 153 IYQAVADIHQAGIENFSLDLISGLP--------HQTLEDWQASLEAAIAINPTHLSCYDLVLEPVTAFG 213 (399)
T ss_pred HHHHHHHHHHCCCCCEEEEEEECCC--------CCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHH
T ss_conf 9999999997699755455330789--------988999999999997338880788888963897799
No 139
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=53.31 E-value=14 Score=17.16 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=12.0
Q ss_pred CCCCCHHHHHHHHHC-CCCCHHHHHHH
Q ss_conf 711113457776415-63220023355
Q gi|254780371|r 174 PIHQIHSLYAYASTL-PGVKISGVDMH 199 (431)
Q Consensus 174 ~~~~~~~~~~~~~~~-~~l~l~GlH~H 199 (431)
.|.+..++++.+++. ++ ...++|||
T Consensus 185 ~P~~v~~~i~~l~~~~~~-~~isvH~H 210 (530)
T PRK12344 185 LPHEVAAIVAEVRARLPG-APLGIHAH 210 (530)
T ss_pred CHHHHHHHHHHHHHHCCC-CEEEEEEC
T ss_conf 889999999999974899-82799845
No 140
>KOG3820 consensus
Probab=53.30 E-value=14 Score=17.23 Aligned_cols=25 Identities=4% Similarity=0.021 Sum_probs=9.7
Q ss_pred CCCCCEEEEEE--CCEEEEEEECCCHH
Q ss_conf 89866599998--89689998248988
Q gi|254780371|r 384 SRLLIPEIMVN--GSQFHIIRPRMTFQ 408 (431)
Q Consensus 384 ~~p~p~~v~v~--~g~~~~ir~ret~e 408 (431)
+.+||-.|-.+ --+++++-.-..++
T Consensus 411 ti~RPF~VrynpyT~svEvLds~~~l~ 437 (461)
T KOG3820 411 TIKRPFSVRYNPYTQSVEVLDSSAKLE 437 (461)
T ss_pred HCCCCCEEEECCCCCEEHHHCCHHHHH
T ss_conf 389984356566411211124789999
No 141
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=53.19 E-value=17 Score=16.65 Aligned_cols=27 Identities=0% Similarity=-0.213 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHHHHCCC-----CCEEEEEECC
Q ss_conf 31145655565421024-----5303441011
Q gi|254780371|r 251 PSSSDYASLIHQYFGNL-----QCKIILEPGR 277 (431)
Q Consensus 251 ~~~~~~~~~i~~~~~~~-----~~~l~~EPGR 277 (431)
.+.+.|.+.+...+.-. -+.|.+|||.
T Consensus 202 QT~~~~~~~l~~~~~l~p~hIS~Y~L~iep~t 233 (424)
T PRK08629 202 QTDEVLQHDLDIAKRLDPRQITTYPLMKSHQT 233 (424)
T ss_pred CCHHHHHHHHHHHHCCCCCEEECCCCEECCCC
T ss_conf 99999999999998179898986366226472
No 142
>pfam04273 DUF442 Putative phosphatase (DUF442). Although this domain is uncharacterized it seems likely that it performs a phosphatase function.
Probab=52.75 E-value=13 Score=17.43 Aligned_cols=85 Identities=16% Similarity=0.144 Sum_probs=47.2
Q ss_pred CCEEECCCCCCCHHHHHHHHCCCCCC-CC--CCCH----HHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 31244477542012444420687233-33--2202----46768774113344215899872377867443332233444
Q gi|254780371|r 97 ERIVFSGVGKTIDEIDLALQSGIYCF-NV--ESES----ELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKED 169 (431)
Q Consensus 97 ~~Ii~~g~~k~~~~l~~ai~~gv~~i-~v--Ds~~----el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~s 169 (431)
+++.. ++.-++++++.+.+.|+.+| +. |.++ ....+.+.+.++|... +-+-| ..+
T Consensus 7 ~~~~v-s~Qi~~~di~~la~~GfktIInnRPd~E~~~qp~~~~~~~~a~~~Gl~y-~~iPv------------~~~---- 68 (110)
T pfam04273 7 EDLSV-SPQIQPDDIAAAARAGFRSVINNRPDGEEPGQPSNAAEQAAARAAGLAY-RFIPV------------ISG---- 68 (110)
T ss_pred CCEEE-CCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCEE-EEEEC------------CCC----
T ss_conf 88757-5998999999999859838853388877789988899999999839979-99644------------778----
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf 5688711113457776415632200233556415
Q gi|254780371|r 170 KFGIPIHQIHSLYAYASTLPGVKISGVDMHIGSQ 203 (431)
Q Consensus 170 KFGi~~~~~~~~~~~~~~~~~l~l~GlH~H~GS~ 203 (431)
+++.+++..+.+.+...++ .+=.||..|+.
T Consensus 69 --~~t~~~v~~f~~~l~~~~~--Pvl~~CrSG~R 98 (110)
T pfam04273 69 --QITEADVEAFQRALAAAEG--PVLAHCRSGTR 98 (110)
T ss_pred --CCCHHHHHHHHHHHHHCCC--CEEEECCCCHH
T ss_conf --9899999999999985899--89998899877
No 143
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=52.16 E-value=18 Score=16.55 Aligned_cols=85 Identities=19% Similarity=0.225 Sum_probs=43.3
Q ss_pred HHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC--CCHHHHHHHHHHCCCCC
Q ss_conf 6768774113344215899872377867443332233444568871111345777641563--22002335564156442
Q gi|254780371|r 130 LKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYASTLPG--VKISGVDMHIGSQIDQI 207 (431)
Q Consensus 130 l~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~~~~~~--l~l~GlH~H~GS~~~~~ 207 (431)
+...-+.|++..+.+++. +| +.+.. ..+ + ..+...++++.+++. + ++=+|+++|.+.+..++
T Consensus 105 i~~aF~~A~~~~P~akL~--~N-Dy~~~-----~~~---~----k~~~~~~lv~~l~~~-g~pIdgIG~Q~H~~~~~~~~ 168 (254)
T smart00633 105 IEKAFRYAREADPDAKLF--YN-DYNTE-----EPN---A----KRQAIYELVKKLKAK-GVPIDGIGLQSHLSLGSPNI 168 (254)
T ss_pred HHHHHHHHHHHCCCCEEE--EE-CCCCC-----CCC---H----HHHHHHHHHHHHHHC-CCCCCEEEEEEEECCCCCCH
T ss_conf 999999999869877898--74-25554-----774---7----799999999999977-99831587624304799999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCC--CCCEEEEC
Q ss_conf 0489999999988765310266--65268806
Q gi|254780371|r 208 ESFHKAFKLLRDLTQQLRSNGH--NIQHIDVG 237 (431)
Q Consensus 208 ~~~~~~~~~~~~~~~~l~~~g~--~~~~ldiG 237 (431)
+.+...++.+ .+.|. .+..+|+.
T Consensus 169 ~~~~~~l~~~-------~~~gl~i~iTElDv~ 193 (254)
T smart00633 169 AEIRAALDRF-------ASLGLEIQITELDIS 193 (254)
T ss_pred HHHHHHHHHH-------HHCCCCEEEEEEECC
T ss_conf 9999999999-------965994378775406
No 144
>pfam00724 Oxidored_FMN NADH:flavin oxidoreductase / NADH oxidase family.
Probab=51.26 E-value=18 Score=16.45 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=17.0
Q ss_pred CCCHHHHHHHHHHCCCCCH----------HHHHHHHHHHHHHHHHHC
Q ss_conf 3220023355641564420----------489999999988765310
Q gi|254780371|r 190 GVKISGVDMHIGSQIDQIE----------SFHKAFKLLRDLTQQLRS 226 (431)
Q Consensus 190 ~l~l~GlH~H~GS~~~~~~----------~~~~~~~~~~~~~~~l~~ 226 (431)
++++.+=|-++-+|.+++. .+..-++.++++.+.+++
T Consensus 159 GVEIh~ahGyLl~QFLSp~~N~RtDeYGGslENR~Rf~~eIi~aIR~ 205 (336)
T pfam00724 159 GVEIHGAHGYLLDQFLSPGSNKRTDEYGGSIENRARFPLEVVDAVKE 205 (336)
T ss_pred EEEECHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 89961426789998628765889776788988975489999999999
No 145
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=51.22 E-value=11 Score=17.91 Aligned_cols=79 Identities=27% Similarity=0.265 Sum_probs=47.0
Q ss_pred CCCCEEEEEH-----HHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHH---CCCCEEEECHHHHHHHHHCCCCC
Q ss_conf 4997899779-----999999999998614479789996410799999999997---39928986899986522125784
Q gi|254780371|r 25 VQTPFYCYST-----TAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAH---LGSGLDIVSEGELRRALAAPVPA 96 (431)
Q Consensus 25 ~gTP~yV~d~-----~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~---~G~g~dv~S~~El~~al~~G~~~ 96 (431)
.+-|..|.|. +.++.-|+.+.++.++ .++.-+.==-....-++.+.+ .|.|+|.+...|-...+..|+|.
T Consensus 201 iDEP~Lv~Dl~~~~~~~~~~~Y~~L~~~~~~--~kill~TYFg~l~d~~~~l~~lpV~glhlDlV~g~~~l~~~~~~~p~ 278 (756)
T PRK05222 201 IDEPALVLDLPEEWLAAFKEAYEALSAAKPR--LKLLLATYFGSLGDNLDTLASLPVDGLHLDLVRGPEQLLAVLAGLPA 278 (756)
T ss_pred CCCCEEECCCCHHHHHHHHHHHHHHHHCCCC--CEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCC
T ss_conf 2587000479999999999999999723788--72999887632889999998189754775301483047899734898
Q ss_pred CCEEECCCC
Q ss_conf 312444775
Q gi|254780371|r 97 ERIVFSGVG 105 (431)
Q Consensus 97 ~~Ii~~g~~ 105 (431)
+++++.|.+
T Consensus 279 ~k~L~aGvV 287 (756)
T PRK05222 279 DKVLSAGVI 287 (756)
T ss_pred CCEEEEEEE
T ss_conf 858999877
No 146
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase; InterPro: IPR011981 This enzyme catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. 4-hydroxyphenylacetate arises from the degradation of tyrosine. The substrate, 3,4-dihydroxyphenylacetate (homoprotocatechuate) arises from the action of a hydroxylase on 4-hydroxyphenylacetate. The aromatic ring is opened by this dioxygenase exo to the 3,4-diol resulting in 2-hydroxy-5-carboxymethylmuconate semialdehyde..
Probab=51.04 E-value=12 Score=17.66 Aligned_cols=173 Identities=19% Similarity=0.253 Sum_probs=93.6
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC---CCHHH--HHHHHHCCCCCHHH
Q ss_conf 33332202467687741133442158998723778674433322334445688711---11345--77764156322002
Q gi|254780371|r 121 CFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIH---QIHSL--YAYASTLPGVKISG 195 (431)
Q Consensus 121 ~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~---~~~~~--~~~~~~~~~l~l~G 195 (431)
.|=|++.++|+++.+..++.|.+.+..= . +...|.-. +=.-.+.||+|++ +..++ ...--.++.+....
T Consensus 65 gfrV~~~Edld~l~~~~~~~G~~~~~~~--~-~~~~GiG~---aLrv~dP~G~P~efYf~m~~v~vynenGrl~Rll~R~ 138 (312)
T TIGR02295 65 GFRVSKEEDLDKLADFFQELGLPVRLVE--D-GGQKGIGE---ALRVEDPFGYPIEFYFEMEKVDVYNENGRLERLLRRA 138 (312)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCEEEEEE--C-CCCCCCCE---EEEEECCCCCCEEEEEEEEEEEEEECCCCCCCCCCCC
T ss_conf 2125880568999999995797588951--6-88899642---8998658897323323123531020478765431100
Q ss_pred HHHHHHHCCCCCH---HHHHHHHHHHHHHHHHHCCCCCC--CEEEECCC-CCCCCC-----------CCCCC--CC----
Q ss_conf 3355641564420---48999999998876531026665--26880687-300026-----------65455--31----
Q gi|254780371|r 196 VDMHIGSQIDQIE---SFHKAFKLLRDLTQQLRSNGHNI--QHIDVGGG-LGIAYH-----------SDHRP--PS---- 252 (431)
Q Consensus 196 lH~H~GS~~~~~~---~~~~~~~~~~~~~~~l~~~g~~~--~~ldiGGG-f~i~y~-----------~~~~~--~~---- 252 (431)
.|.|.|......+ .+...++...+++++ ..|+.+ .+.+=||| +-+... ..... |.
T Consensus 139 y~~h~G~~~~RlDH~N~~v~dv~~~~~yy~~--~LGF~~tEy~~~dgeG~~~AaWlhRkG~vHD~Al~~g~GnvPrLHH~ 216 (312)
T TIGR02295 139 YHRHKGVEPLRLDHFNVFVPDVQRALRYYKE--ELGFRVTEYTEDDGEGNLAAAWLHRKGGVHDIALTNGNGNVPRLHHI 216 (312)
T ss_pred CHHCCCCCEEEEEEECCCCCCCHHHHHHHHH--HCCCEEEEEEEECCCCEEEEEECCCCCCCCEEEEECCCCCCCCCCEE
T ss_conf 1010488544552203024560568999998--66945778766569985899970138496308887673798964126
Q ss_pred ---HHHHHHH--HHHHHCCCCCE--EEEEECCEECCCCCEEEEEEEEECCCCC-------CCCEEECC
Q ss_conf ---1456555--65421024530--3441011120366325888764034689-------74220055
Q gi|254780371|r 253 ---SSDYASL--IHQYFGNLQCK--IILEPGRFLVADVGILVTKVISIKKSAD-------KTFVILDV 306 (431)
Q Consensus 253 ---~~~~~~~--i~~~~~~~~~~--l~~EPGR~lva~ag~ll~~V~~vK~~~~-------~~~~~vD~ 306 (431)
..+-.+. +++.++..+.. |--=|||.=|.||.+|-- |...+ ..|+.+|-
T Consensus 217 aY~v~dp~~iI~~cD~LA~~g~~D~IERGPGRHG~SNAffLYl-----rDPDghRIElYt~DY~t~D~ 279 (312)
T TIGR02295 217 AYWVHDPLNIIKACDILASAGLSDSIERGPGRHGVSNAFFLYL-----RDPDGHRIELYTGDYLTGDP 279 (312)
T ss_pred EEECCCHHHHHHHCCHHHCCCCCCEECCCCCCCCCCCCEEEEE-----ECCCCCEEEEECCCCEEECC
T ss_conf 6561887999743134330465430020778765222004333-----46899789998288225427
No 147
>PRK08199 acetolactate synthase 2 catalytic subunit; Validated
Probab=50.92 E-value=18 Score=16.42 Aligned_cols=39 Identities=18% Similarity=0.128 Sum_probs=19.5
Q ss_pred EEEEECCCCHHHHHHC--CCCCCCCCEEEEE-ECCEEEEEEE
Q ss_conf 9999679702333402--7788986659999-8896899982
Q gi|254780371|r 365 LLYIEKTGAYGAVQSG--TYNSRLLIPEIMV-NGSQFHIIRP 403 (431)
Q Consensus 365 ~l~i~~~GAY~~s~~s--~fn~~p~p~~v~v-~~g~~~~ir~ 403 (431)
.++|..=|++.|+... ....+..|..++| +|+....||.
T Consensus 430 Vv~i~GDG~f~m~~~eL~Ta~~~~lpv~ivV~NN~~yg~i~~ 471 (553)
T PRK08199 430 VVAFAGDGCFLMNGQELATAVQYGLPIIVIVVNNGMYGTIRM 471 (553)
T ss_pred EEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH
T ss_conf 899988627654199999999978796899996895179999
No 148
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=50.36 E-value=19 Score=16.36 Aligned_cols=14 Identities=14% Similarity=0.119 Sum_probs=5.8
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 44204899999999
Q gi|254780371|r 205 DQIESFHKAFKLLR 218 (431)
Q Consensus 205 ~~~~~~~~~~~~~~ 218 (431)
.+++.+..+++.+.
T Consensus 143 ~~~~el~~al~~a~ 156 (168)
T cd00568 143 EDPEDLEAALAEAL 156 (168)
T ss_pred CCHHHHHHHHHHHH
T ss_conf 99999999999998
No 149
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase; InterPro: IPR004559 Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins called HemN (IPR004558 from INTERPRO). This family contains a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including Escherichia coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the Escherichia coli hemN family. The member of this family from Bacillus subtilis was shown to complement a hemF/hemN double mutant of Salmonella typhimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize haem de novo. ; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin biosynthetic process, 0005737 cytoplasm.
Probab=49.77 E-value=19 Score=16.30 Aligned_cols=190 Identities=19% Similarity=0.293 Sum_probs=93.6
Q ss_pred EEEECCCCHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHH---HHHHHHHCCC---CEEEECH
Q ss_conf 589878429999997499789977999999999999861447978999641079999---9999997399---2898689
Q gi|254780371|r 10 SLHAENVSLEKLAHVVQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQA---VIKTLAHLGS---GLDIVSE 83 (431)
Q Consensus 10 ~l~i~~~~l~~La~~~gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~---il~~l~~~G~---g~dv~S~ 83 (431)
-.+|+| |||-- ++.+.|++=+..+++.+....-.+=+++-|||..- -++.+.+.|+ .+=|-|
T Consensus 59 siFIGG----------GTP~~-lS~e~~~~l~~~I~~~~~P~sd~~Eit~eANP~~~~ae~~kglk~aGinRlS~GvQs- 126 (371)
T TIGR00539 59 SIFIGG----------GTPSL-LSAEALKKLLEEIKKQLKPLSDDIEITVEANPDLVEAEKLKGLKEAGINRLSLGVQS- 126 (371)
T ss_pred EEEECC----------CCCCH-HHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCEEEEECCCCC-
T ss_conf 688568----------87414-689999999999875217431021111107821256988636765570233213345-
Q ss_pred HHHHHHHHCCCCCCCEEECCCCCCCHH----HHHHHHCCCCCCCCCCCHH--------HHHHHHHHCCCCCC-EE-EEEE
Q ss_conf 998652212578431244477542012----4444206872333322024--------67687741133442-15-8998
Q gi|254780371|r 84 GELRRALAAPVPAERIVFSGVGKTIDE----IDLALQSGIYCFNVESESE--------LKTLNQRAVSLGKK-AP-IAFR 149 (431)
Q Consensus 84 ~El~~al~~G~~~~~Ii~~g~~k~~~~----l~~ai~~gv~~i~vDs~~e--------l~~l~~~a~~~~~~-~~-I~lR 149 (431)
|.-+++.+-|-.-+..+ ++.|.+.|..-|++|=+.. ++.=...|.++... .. -.|-
T Consensus 127 ----------F~dDkL~~lgR~H~~k~~~~a~e~a~~sG~enislDL~~glP~qtl~~l~~~l~~A~eL~~~H~S~Y~L~ 196 (371)
T TIGR00539 127 ----------FEDDKLEKLGRVHKAKDVASAVELAKKSGLENISLDLMYGLPLQTLEELKEELKLALELDAEHLSVYALI 196 (371)
T ss_pred ----------CHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf ----------4155788864211333466799999871752000554407861348999999865531784511233234
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHH-HHHHHHHHHHHHCC
Q ss_conf 7237786744333223344456887111-134577764156322002335564156442048999-99999887653102
Q gi|254780371|r 150 VNPDINANTHKKISTGKKEDKFGIPIHQ-IHSLYAYASTLPGVKISGVDMHIGSQIDQIESFHKA-FKLLRDLTQQLRSN 227 (431)
Q Consensus 150 inp~~~~~~~~~~~tg~~~sKFGi~~~~-~~~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~-~~~~~~~~~~l~~~ 227 (431)
|-|+--... . .+-.|.-.|+++ ..++.+.+.+. |+..|+| | ....+|.++ .+-=.++. +
T Consensus 197 vEpnT~f~~----~--~~KGrlhlP~~~~~a~~~e~v~~~--le~~g~~-----Q-YE~SnyAkaG~q~KHNL~-----Y 257 (371)
T TIGR00539 197 VEPNTVFEK----R--AKKGRLHLPDDDALAEIYEVVREL--LEAFGYK-----Q-YEVSNYAKAGYQVKHNLA-----Y 257 (371)
T ss_pred ECCCHHHHH----C--CCCCCCCCCCCHHHHHHHHHHHHH--HHHCCCC-----H-HHHHHHHHCCCCCCCCCC-----C
T ss_conf 223304542----6--888878946703456799999999--9855822-----2-212388637876200223-----3
Q ss_pred CCCCCEEEECCCC
Q ss_conf 6665268806873
Q gi|254780371|r 228 GHNIQHIDVGGGL 240 (431)
Q Consensus 228 g~~~~~ldiGGGf 240 (431)
.-.-+|+-+|-|=
T Consensus 258 W~~~dYlg~GaGA 270 (371)
T TIGR00539 258 WSAEDYLGIGAGA 270 (371)
T ss_pred CCCCCCEEECCCE
T ss_conf 6766613533740
No 150
>TIGR01283 nifE nitrogenase MoFe cofactor biosynthesis protein NifE; InterPro: IPR005973 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene. Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes. It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I. ; GO: 0005515 protein binding, 0006461 protein complex assembly, 0009399 nitrogen fixation.
Probab=49.25 E-value=19 Score=16.25 Aligned_cols=62 Identities=16% Similarity=0.219 Sum_probs=42.0
Q ss_pred CCHHHHHHHCC-CCEEEEEH-------HHHHHHHHHHHHHCCC----CCCEEEEEE-ECCCCHHHHHHHHHCCCC
Q ss_conf 42999999749-97899779-------9999999999986144----797899964-107999999999973992
Q gi|254780371|r 16 VSLEKLAHVVQ-TPFYCYST-------TAIEKNYLTFSNAFDG----MDTMVCYAL-KANSNQAVIKTLAHLGSG 77 (431)
Q Consensus 16 ~~l~~La~~~g-TP~yV~d~-------~~i~~n~~~l~~a~~~----~~~~i~yAv-KaN~~~~il~~l~~~G~g 77 (431)
..+.++.++|- .-.|||+- |.|+.=|++-.+.+-- ++..=|+.. |.--|..-+..|.++-.|
T Consensus 116 ~aI~e~v~~Y~P~AvFVYsTCv~alIGDD~~AVCk~A~~k~G~~ViPV~s~GF~G~NK~lGnk~AcdALl~~vig 190 (470)
T TIGR01283 116 HAIREIVERYHPAAVFVYSTCVVALIGDDLEAVCKAAAEKYGIPVIPVDSEGFYGSNKNLGNKLACDALLKHVIG 190 (470)
T ss_pred HHHHHHHHHCCCCEEEEECCEECCEECCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 999999863299748994571310244888999999972358606751578877777550027899999986389
No 151
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=49.03 E-value=20 Score=16.23 Aligned_cols=103 Identities=16% Similarity=0.159 Sum_probs=50.3
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCC-CCCCCCC
Q ss_conf 56887111134577764156322002335564156-442048999999998876531026665268806873-0002665
Q gi|254780371|r 170 KFGIPIHQIHSLYAYASTLPGVKISGVDMHIGSQI-DQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGL-GIAYHSD 247 (431)
Q Consensus 170 KFGi~~~~~~~~~~~~~~~~~l~l~GlH~H~GS~~-~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf-~i~y~~~ 247 (431)
.|.-+..+..++.+.++++ |+.+.++..+..... .+.......++.....++...+.| .+.+.+.-|. +......
T Consensus 39 ~~~~~~~~~~~l~~~l~~~-gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg--~~~vv~~~g~~~~~~~~~ 115 (274)
T COG1082 39 LFPADYKELAELKELLADY-GLEITSLAPFSNNLLSPDEEEREEALEELKRAIELAKELG--AKVVVVHPGLGAGADDPD 115 (274)
T ss_pred CCCCCHHHHHHHHHHHHHC-CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCC
T ss_conf 6564501199999999976-9748982255665578766889989999999999999849--988999547776766665
Q ss_pred CCCC---CHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 4553---114565556542102453034410
Q gi|254780371|r 248 HRPP---SSSDYASLIHQYFGNLQCKIILEP 275 (431)
Q Consensus 248 ~~~~---~~~~~~~~i~~~~~~~~~~l~~EP 275 (431)
.... .+.+....+.+..++.+..+-+||
T Consensus 116 ~~~~~~~~~~~~l~~l~~~a~~~~i~l~~e~ 146 (274)
T COG1082 116 SPEEARERWAEALEELAEIAEELGIGLALEN 146 (274)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_conf 6045689999999999999998098079726
No 152
>pfam03328 HpcH_HpaI HpcH/HpaI aldolase/citrate lyase family. This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase and 4-hydroxy-2-oxovalerate aldolase.
Probab=48.98 E-value=17 Score=16.58 Aligned_cols=113 Identities=15% Similarity=0.131 Sum_probs=49.9
Q ss_pred EEECCCCHH--HHHHHCCCCEEEEEHHH---------HHHHHHHHHHHCC---CCCCEEEEEEECCC--CHHHHHHH--H
Q ss_conf 898784299--99997499789977999---------9999999998614---47978999641079--99999999--9
Q gi|254780371|r 11 LHAENVSLE--KLAHVVQTPFYCYSTTA---------IEKNYLTFSNAFD---GMDTMVCYALKANS--NQAVIKTL--A 72 (431)
Q Consensus 11 l~i~~~~l~--~La~~~gTP~yV~d~~~---------i~~n~~~l~~a~~---~~~~~i~yAvKaN~--~~~il~~l--~ 72 (431)
|++-+-+.+ +.+...|.-+.|+|++. -|.++..+.+.+. ..+.+++ |.-|+ .+.+.+-+ .
T Consensus 4 LfvP~~~p~~~~ka~~~gaD~viiDLEdav~~~~K~~AR~~v~~~l~~~~~~~~~~~~~~--VRIn~~~~~~~~~dl~~l 81 (221)
T pfam03328 4 LFLPGANPAMAEKAAIAGADWVVIDLEHAVALAEKDAARVLVHTALHQLQAIAAAHSEVV--VRVNGLDSPFGKQDLAVL 81 (221)
T ss_pred EECCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEE--EEECCCCCHHHHHHHHHH
T ss_conf 762389999999985489899999876799954089999999999998776415898289--975999836899799999
Q ss_pred HCCC-CEE---EECHHHHHHHHHC-CCCCCCEEECCCCCCCHHHHHHHHCCCC-CCCCCCCHHHHHHHHHHC
Q ss_conf 7399-289---8689998652212-5784312444775420124444206872-333322024676877411
Q gi|254780371|r 73 HLGS-GLD---IVSEGELRRALAA-PVPAERIVFSGVGKTIDEIDLALQSGIY-CFNVESESELKTLNQRAV 138 (431)
Q Consensus 73 ~~G~-g~d---v~S~~El~~al~~-G~~~~~Ii~~g~~k~~~~l~~ai~~gv~-~i~vDs~~el~~l~~~a~ 138 (431)
+.|. |+- |.|..|++.+.+. -.++...-. ....+. +..|+|..-++.+.+++.
T Consensus 82 ~~g~~gI~lPkv~s~~~v~~~~~~l~~~~~~~~~-------------~~~~~~ii~~IEt~~gl~~~~eIaa 140 (221)
T pfam03328 82 DAGAQGVLVPKVETAEEAREAVSACRYPPKGIRG-------------ANGNTCLLAQIESALGVLNADEIAA 140 (221)
T ss_pred HCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCC-------------CCCCEEEEEEECCHHHHHHHHHHHC
T ss_conf 6488889992669999999999997435421268-------------8897279999789899996999974
No 153
>PRK04036 DNA polymerase II small subunit; Validated
Probab=48.92 E-value=18 Score=16.42 Aligned_cols=80 Identities=23% Similarity=0.407 Sum_probs=39.5
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCC----CCCCCCCCCCCC---HHHHHHHHHHHHCCC--
Q ss_conf 35564156442048999999998876531026665268806873----000266545531---145655565421024--
Q gi|254780371|r 197 DMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGL----GIAYHSDHRPPS---SSDYASLIHQYFGNL-- 267 (431)
Q Consensus 197 H~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf----~i~y~~~~~~~~---~~~~~~~i~~~~~~~-- 267 (431)
-.|+||...-.+.|.+.++=+-.-... .+..-.++||=|+|-. || |-..+..+. +.+--+.+++.++..
T Consensus 244 DiHvGSk~Fle~~w~kFi~Wln~~~~~-~~~a~~vkYlviaGD~VDGVGi-YPgQe~eL~i~di~~QY~~~a~~l~~iP~ 321 (497)
T PRK04036 244 DVHVGSKEFLEDAFEKFLDWLNGEVGS-EEIASRVKYLIIAGDLVDGIGI-YPGQEKELDIVDIYEQYEEAAEYLSQIPE 321 (497)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCC-HHHHHCCCEEEEECCCCCCEEC-CCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 222171878799999999986589863-4456405389994574364005-89843414307899999999999985855
Q ss_pred CCEEEEEECCE
Q ss_conf 53034410111
Q gi|254780371|r 268 QCKIILEPGRF 278 (431)
Q Consensus 268 ~~~l~~EPGR~ 278 (431)
++++++=||-.
T Consensus 322 ~I~iii~PGNH 332 (497)
T PRK04036 322 HIKIIISPGNH 332 (497)
T ss_pred CCEEEECCCCC
T ss_conf 75799857986
No 154
>TIGR02635 RhaI_grampos L-rhamnose isomerase; InterPro: IPR013457 The proteins in this entry are closely related to the L-rhamnose isomerases (IPR013451 from INTERPRO) found in Pseudomonas stutzeri and in a number of the Rhizobiales. They are encoded in similar genomic contexts, close to genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (IPR013454 from INTERPRO), sugar kinases, and sugar transporters..
Probab=48.64 E-value=11 Score=17.88 Aligned_cols=97 Identities=23% Similarity=0.319 Sum_probs=45.3
Q ss_pred CCCCCCE-EECCCC--CCCHH-HHHHHH----CCC-----CCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCC
Q ss_conf 5784312-444775--42012-444420----687-----2333322024676877411334421589987237786744
Q gi|254780371|r 93 PVPAERI-VFSGVG--KTIDE-IDLALQ----SGI-----YCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTH 159 (431)
Q Consensus 93 G~~~~~I-i~~g~~--k~~~~-l~~ai~----~gv-----~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~ 159 (431)
|=++.|. ||.-++ .++.| |+-|.. .|+ .+|-=|..+..+.|.+.|.++|.+ +| =|||+. ++
T Consensus 21 GnSGTRF~VF~~~G~aR~v~EK~~DAA~VH~LTG~cPtVALHIPWD~v~Dy~~L~~yAE~~Gl~--~G-aiNpNl-FQ-- 94 (382)
T TIGR02635 21 GNSGTRFKVFKQEGAARNVFEKLEDAALVHKLTGICPTVALHIPWDRVDDYEELAEYAEELGLK--LG-AINPNL-FQ-- 94 (382)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC--CC-CCCCCC-CC--
T ss_conf 5777630002776899876555888999988627764101148998960269999999872884--44-537876-76--
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 3332233444568871111345777641563220023355641
Q gi|254780371|r 160 KKISTGKKEDKFGIPIHQIHSLYAYASTLPGVKISGVDMHIGS 202 (431)
Q Consensus 160 ~~~~tg~~~sKFGi~~~~~~~~~~~~~~~~~l~l~GlH~H~GS 202 (431)
-.+-|||=-.+--.++-+++-++ .|+-+-|---+||
T Consensus 95 ------DDDYKfGSlThp~~~iR~KAi~h-~LeCvdIa~~tGS 130 (382)
T TIGR02635 95 ------DDDYKFGSLTHPDKRIRRKAIDH-LLECVDIAKKTGS 130 (382)
T ss_pred ------CCCCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHCC
T ss_conf ------85435567657347999999999-9989999986088
No 155
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=48.56 E-value=20 Score=16.18 Aligned_cols=14 Identities=29% Similarity=0.283 Sum_probs=7.9
Q ss_pred CCCHHHHHHHHCCC
Q ss_conf 42012444420687
Q gi|254780371|r 106 KTIDEIDLALQSGI 119 (431)
Q Consensus 106 k~~~~l~~ai~~gv 119 (431)
.+..||..|.+++.
T Consensus 81 m~~~eL~Ta~~~~l 94 (178)
T cd02002 81 YTIQALWTAARYGL 94 (178)
T ss_pred CCCHHHEEEHHHCC
T ss_conf 55222100014179
No 156
>KOG1610 consensus
Probab=48.07 E-value=20 Score=16.13 Aligned_cols=63 Identities=16% Similarity=0.254 Sum_probs=36.9
Q ss_pred HHHHHHHHHHCCCCCCCEEEECCCC---CCCCCCCC--CCCCHHHHHHHHHHHHCCCCCEE-EEEECCEECCCC
Q ss_conf 9998876531026665268806873---00026654--55311456555654210245303-441011120366
Q gi|254780371|r 216 LLRDLTQQLRSNGHNIQHIDVGGGL---GIAYHSDH--RPPSSSDYASLIHQYFGNLQCKI-ILEPGRFLVADV 283 (431)
Q Consensus 216 ~~~~~~~~l~~~g~~~~~ldiGGGf---~i~y~~~~--~~~~~~~~~~~i~~~~~~~~~~l-~~EPGR~lva~a 283 (431)
.++.+.++. .| +++|+++.. +.|..... .....+.|++.++..+..+++++ ++|||=|-..-+
T Consensus 148 ~~lpLlr~a--rG---RvV~v~S~~Gr~~~p~~g~Y~~SK~aVeaf~D~lR~El~~fGV~VsiiePG~f~T~l~ 216 (322)
T KOG1610 148 AFLPLLRRA--RG---RVVNVSSVLGRVALPALGPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEPGFFKTNLA 216 (322)
T ss_pred HHHHHHHHC--CC---EEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC
T ss_conf 888777760--57---0899504456766765665203299999999999988775286799964675566667
No 157
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=47.57 E-value=21 Score=16.08 Aligned_cols=50 Identities=12% Similarity=0.264 Sum_probs=26.4
Q ss_pred EEECCCCCCCHHHHHHHHCCCCCCCCCCC--HHHHHHHHHHCCCCCC-EEEEE
Q ss_conf 24447754201244442068723333220--2467687741133442-15899
Q gi|254780371|r 99 IVFSGVGKTIDEIDLALQSGIYCFNVESE--SELKTLNQRAVSLGKK-APIAF 148 (431)
Q Consensus 99 Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~--~el~~l~~~a~~~~~~-~~I~l 148 (431)
+.+.|-.++.++++.+++.|+.-+++.|. ..-+.+.+++...|.+ +-++|
T Consensus 74 i~vGGGIrs~~~~~~~l~~GadkVvigs~~~~n~~~~~~~~~~~Gsq~Iv~si 126 (243)
T cd04731 74 LTVGGGIRSLEDARRLLRAGADKVSINSAAVENPELIREIAKRFGSQCVVVSI 126 (243)
T ss_pred EEEEEEEEEHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHCCCCCEEEEE
T ss_conf 89985066479999999779978998984423771435788756993099999
No 158
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=47.23 E-value=21 Score=16.04 Aligned_cols=30 Identities=17% Similarity=0.348 Sum_probs=13.4
Q ss_pred CCCCCCHHHHHHHHHHC---CCCCCEEEEEEEE
Q ss_conf 33322024676877411---3344215899872
Q gi|254780371|r 122 FNVESESELKTLNQRAV---SLGKKAPIAFRVN 151 (431)
Q Consensus 122 i~vDs~~el~~l~~~a~---~~~~~~~I~lRin 151 (431)
..+.+.+++....+.|- ..+++.+|.|-|-
T Consensus 131 ~~v~~~~~i~~~~~~A~~~a~~~r~GPV~l~iP 163 (572)
T PRK06456 131 VQLKKIDEIPQWIKNAFYIASTGRPGPVVVDIP 163 (572)
T ss_pred EECCCHHHHHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf 880999999999999999985289975599757
No 159
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=46.89 E-value=21 Score=16.01 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=12.0
Q ss_pred CCCCCHHHHHHHHHHC---CCCCCEEEEEEE
Q ss_conf 3322024676877411---334421589987
Q gi|254780371|r 123 NVESESELKTLNQRAV---SLGKKAPIAFRV 150 (431)
Q Consensus 123 ~vDs~~el~~l~~~a~---~~~~~~~I~lRi 150 (431)
.+.+.+++....+.|- ..+++.+|.|-|
T Consensus 158 ~v~~~~~i~~~l~~A~~~A~~grpGPV~i~i 188 (612)
T PRK07789 158 LVTRAEDIPRVIAEAFHIASTGRPGPVLVDI 188 (612)
T ss_pred EECCHHHHHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 2189999999999999999618996389967
No 160
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit; InterPro: IPR006478 This group of sequences describe a subset of formate dehydrogenase alpha chains found mainly in the archaea but also in alpha and gamma proteobacteria and a small number of Gram-positive bacteria. The alpha chain contains domains for molybdopterin dinucleotide binding and molybdopterin oxidoreductase. The holo-enzyme also contains beta and gamma subunits. The enzyme catalyzes the oxidation of formate (produced from pyruvate during anaerobic growth) to carbon dioxide with the concomitant release of two electrons and two protons. The enzyme's purpose is to allow growth on formate in some circumstances and, in the case of FdhH in gamma proteobacteria, to pass electrons to hydrogenase (by which process acid is neutralized) . The alpha subunit of a version of nitrate reductase is closely related.; GO: 0008863 formate dehydrogenase activity, 0015942 formate metabolic process, 0009326 formate dehydrogenase complex.
Probab=46.88 E-value=18 Score=16.52 Aligned_cols=129 Identities=14% Similarity=0.128 Sum_probs=73.8
Q ss_pred CHHHHHHHCCC---CEEEEEHHH-HHHHH--HHHHH-HCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHH
Q ss_conf 29999997499---789977999-99999--99998-6144797899964107999999999973992898689998652
Q gi|254780371|r 17 SLEKLAHVVQT---PFYCYSTTA-IEKNY--LTFSN-AFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEGELRRA 89 (431)
Q Consensus 17 ~l~~La~~~gT---P~yV~d~~~-i~~n~--~~l~~-a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~S~~El~~a 89 (431)
.|.++-++||. -|+-=+... .+++| +.|.+ .+-..|+--| ..-|..|.+.-+-...|.|+...+..|++-+
T Consensus 86 kL~~I~e~YGp~~Igf~~ssr~tGNEe~Y~~QKlAR~~~GTNNvD~C--AR~CH~Ps~~gL~~~~G~GA~s~~~~~ie~a 163 (694)
T TIGR01591 86 KLKEIKEKYGPDSIGFIASSRITGNEENYLLQKLARAVLGTNNVDNC--ARVCHEPSVAGLKQTVGIGAMSNTISDIENA 163 (694)
T ss_pred HHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCC--CCCCCCHHHHHHHHHHCCCCCCCCCHHHHCC
T ss_conf 99988621483214442037887523678999999998503774554--5403787899999762455335520344327
Q ss_pred HHCCCCCCCEEECCCCCCCHHHHHHH-HCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECC
Q ss_conf 21257843124447754201244442-06872333322024676877411334421589987237
Q gi|254780371|r 90 LAAPVPAERIVFSGVGKTIDEIDLAL-QSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPD 153 (431)
Q Consensus 90 l~~G~~~~~Ii~~g~~k~~~~l~~ai-~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~ 153 (431)
...=+-+..-.=+.|+.. +.|-.|. .+|+.+|++|- ++. +.++.....++.-|.+.||
T Consensus 164 ~~ivi~G~N~~esHPvv~-~~l~~AKk~nGaKiiV~Dp----R~t-~taksahi~AD~~i~~k~G 222 (694)
T TIGR01591 164 DLIVIIGANPAESHPVVA-SKLMRAKKRNGAKIIVIDP----RKT-ETAKSAHIIADLFIPLKPG 222 (694)
T ss_pred CEEEEECCCCCCCCHHHH-HHHHHHHHHCCCEEEEECC----CCC-CHHHHHHHCCCEEEECCCC
T ss_conf 758997567655543689-9999998508978999758----886-0232211101106517997
No 161
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=46.70 E-value=7.4 Score=19.10 Aligned_cols=83 Identities=16% Similarity=0.126 Sum_probs=38.6
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHH---HHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC--CCEE
Q ss_conf 3556415644204899999999887---6531026665268806873000266545531145655565421024--5303
Q gi|254780371|r 197 DMHIGSQIDQIESFHKAFKLLRDLT---QQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQYFGNL--QCKI 271 (431)
Q Consensus 197 H~H~GS~~~~~~~~~~~~~~~~~~~---~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~~~~~~--~~~l 271 (431)
-+|+||+..-...|...++-+--.. .+++=.-..-+.+|-.|..|-.|.+-...-.+++| +.+++.+... .+++
T Consensus 233 Dih~GSk~F~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy-~~~A~~L~~vp~~I~v 311 (481)
T COG1311 233 DIHRGSKEFLEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQY-EELAEFLDQVPEHIKV 311 (481)
T ss_pred EEECCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHH-HHHHHHHHHCCCCCEE
T ss_conf 111052888888999999986387543212379997055213434446861210005516789-9999988538777569
Q ss_pred EEEECCEEC
Q ss_conf 441011120
Q gi|254780371|r 272 ILEPGRFLV 280 (431)
Q Consensus 272 ~~EPGR~lv 280 (431)
++=||-+=.
T Consensus 312 ~i~PGnhDa 320 (481)
T COG1311 312 FIMPGNHDA 320 (481)
T ss_pred EEECCCCCC
T ss_conf 981588875
No 162
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=46.52 E-value=21 Score=15.97 Aligned_cols=28 Identities=21% Similarity=0.426 Sum_probs=11.7
Q ss_pred CCCCCHHHHHHHHHHC---CCCCCEEEEEEE
Q ss_conf 3322024676877411---334421589987
Q gi|254780371|r 123 NVESESELKTLNQRAV---SLGKKAPIAFRV 150 (431)
Q Consensus 123 ~vDs~~el~~l~~~a~---~~~~~~~I~lRi 150 (431)
.+.+.+++..+.+.|- ..+++.+|-|-+
T Consensus 134 ~v~~~~~~~~~~~~A~~~A~~~r~GPV~l~l 164 (562)
T PRK06048 134 LVQDAKDLPRIVKEAFHIASTGRPGPVLIDL 164 (562)
T ss_pred EECCHHHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 8489999999999999999648997679973
No 163
>pfam00842 Ala_racemase_C Alanine racemase, C-terminal domain.
Probab=46.51 E-value=21 Score=15.97 Aligned_cols=35 Identities=23% Similarity=0.212 Sum_probs=26.7
Q ss_pred EEEEEEEEECCCCCEEEEEEE-CCCCCCCCEEEEECCC
Q ss_conf 589998100056666562100-5668888899996797
Q gi|254780371|r 336 IHADIVGPICETGDFIALNRK-IALPRPGDLLYIEKTG 372 (431)
Q Consensus 336 ~~~~i~G~~C~~~D~l~~~~~-lp~l~~GD~l~i~~~G 372 (431)
+.+-+.|..|+ |.+.-+.. .|..++||.+.+.+-+
T Consensus 60 ~~~pivGrIsM--D~~~idv~~~~~~~~Gd~V~l~G~~ 95 (125)
T pfam00842 60 KRAPIVGRVSM--DQTMVDVTDIPDVKVGDEVTLFGPQ 95 (125)
T ss_pred EEEEEECEECC--CEEEEECCCCCCCCCCCEEEEECCC
T ss_conf 99301072612--2589955688777789899998999
No 164
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=46.44 E-value=21 Score=15.96 Aligned_cols=27 Identities=11% Similarity=0.009 Sum_probs=15.8
Q ss_pred CCCCCCHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 8711113457776415632200233556
Q gi|254780371|r 173 IPIHQIHSLYAYASTLPGVKISGVDMHI 200 (431)
Q Consensus 173 i~~~~~~~~~~~~~~~~~l~l~GlH~H~ 200 (431)
+.|.+..++++.+++..++. .|+|+|-
T Consensus 171 ~~P~~v~~~v~~l~~~~~~~-i~~H~HN 197 (378)
T PRK11858 171 LDPFTMYELVKELVEAVDIP-IEVHCHN 197 (378)
T ss_pred CCHHHHHHHHHHHHHHCCCC-EEEEEEC
T ss_conf 69999999999999726985-5999707
No 165
>PRK05660 coproporphyrinogen III oxidase; Provisional
Probab=45.06 E-value=22 Score=15.82 Aligned_cols=59 Identities=14% Similarity=0.132 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-----CCEEEEEECCEECC
Q ss_conf 99998876531026665268806873000266545531145655565421024-----53034410111203
Q gi|254780371|r 215 KLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQYFGNL-----QCKIILEPGRFLVA 281 (431)
Q Consensus 215 ~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~~~~~~-----~~~l~~EPGR~lva 281 (431)
+.+.+..+.+++.|++---+|+==|+| ..+.+.|...|.+.+.-. -+.|.+|||..+..
T Consensus 143 ~~~~~ai~~~r~~gf~~iniDLiyGlP--------~Qt~~~~~~~l~~~~~l~p~his~Y~L~~e~~T~~~~ 206 (378)
T PRK05660 143 DEAKRAAKLAQGAGLRSFNLDLMHGLP--------DQSLEEALDDLRQAIALNPPHLSWYQLTIEPNTVFGS 206 (378)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCC--------CCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHH
T ss_conf 999999999997699606542326899--------9889999999999864498805788888658973764
No 166
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=44.71 E-value=23 Score=15.79 Aligned_cols=30 Identities=10% Similarity=0.168 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHHHCCC-----CCEEEEEECCEEC
Q ss_conf 31145655565421024-----5303441011120
Q gi|254780371|r 251 PSSSDYASLIHQYFGNL-----QCKIILEPGRFLV 280 (431)
Q Consensus 251 ~~~~~~~~~i~~~~~~~-----~~~l~~EPGR~lv 280 (431)
.+.+.|.+.|.+.+.-. -+.+.+|||..+.
T Consensus 184 Qt~~~~~~~l~~~~~l~p~hiS~Y~L~iep~T~~~ 218 (393)
T PRK08898 184 QTLDECRADVETALAFGPPHLSLYHLTLEPNTLFA 218 (393)
T ss_pred CCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHH
T ss_conf 98999999999986249995898777764897332
No 167
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=44.30 E-value=23 Score=15.75 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=20.2
Q ss_pred CEEEEECCCCHHHHHHC--CCCCCCCCEEEEE-ECCEEEEEEEC
Q ss_conf 89999679702333402--7788986659999-88968999824
Q gi|254780371|r 364 DLLYIEKTGAYGAVQSG--TYNSRLLIPEIMV-NGSQFHIIRPR 404 (431)
Q Consensus 364 D~l~i~~~GAY~~s~~s--~fn~~p~p~~v~v-~~g~~~~ir~r 404 (431)
..++|..=|++.|+... ..-.+..|..++| +|+....||..
T Consensus 446 ~Vv~i~GDGsf~mt~qEL~Tavr~~lpv~ivV~NN~~yg~ir~~ 489 (588)
T CHL00099 446 QVICISGDASFQMNLQELGTIAQYKLPIKIIIINNKWQGMVRQW 489 (588)
T ss_pred CEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHH
T ss_conf 18999754586321999999999689958999979833699999
No 168
>pfam01136 Peptidase_U32 Peptidase family U32.
Probab=44.26 E-value=23 Score=15.74 Aligned_cols=83 Identities=18% Similarity=0.194 Sum_probs=55.2
Q ss_pred HHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCCEEECC--CCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCC-
Q ss_conf 999999997399-289868999865221257843124447--7542012444420687233332202467687741133-
Q gi|254780371|r 65 QAVIKTLAHLGS-GLDIVSEGELRRALAAPVPAERIVFSG--VGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSL- 140 (431)
Q Consensus 65 ~~il~~l~~~G~-g~dv~S~~El~~al~~G~~~~~Ii~~g--~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~- 140 (431)
...++.+.+.|. ++.|+-++=++++.+. .+.-.|+.+. ++-+.+.++...+.|+..+++.-+-.++.|.+++.+.
T Consensus 5 ~~~l~~l~~~gvDaiiv~D~g~~~~~~~~-~p~l~ih~s~~~nv~N~~~~~~~~~~G~~rvvlsrElsl~ei~~i~~~~~ 83 (232)
T pfam01136 5 REYLEKLAEIGVDAVIVADPGVLRLARER-FPDLPIHASTQANVTNSEALRFLAELGAKRVVLARELSLDEIKEIAEKLP 83 (232)
T ss_pred HHHHHHHHHCCCCEEEEECHHHHHHHHHH-CCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCC
T ss_conf 99999999769999998099999999986-89987899605557789999999986995796561088999999998389
Q ss_pred CCCEEEEE
Q ss_conf 44215899
Q gi|254780371|r 141 GKKAPIAF 148 (431)
Q Consensus 141 ~~~~~I~l 148 (431)
+...+|.+
T Consensus 84 ~~e~Evfv 91 (232)
T pfam01136 84 DVELEVFV 91 (232)
T ss_pred CCEEEEEE
T ss_conf 98189999
No 169
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=44.12 E-value=23 Score=15.73 Aligned_cols=38 Identities=11% Similarity=0.248 Sum_probs=20.5
Q ss_pred EEEEECCCCHHHHHH-----CCCCCCCCCEEEEE-ECCEEEEEEECC
Q ss_conf 999967970233340-----27788986659999-889689998248
Q gi|254780371|r 365 LLYIEKTGAYGAVQS-----GTYNSRLLIPEIMV-NGSQFHIIRPRM 405 (431)
Q Consensus 365 ~l~i~~~GAY~~s~~-----s~fn~~p~p~~v~v-~~g~~~~ir~re 405 (431)
.++|..=|++.+++. .+++ .|..++| +|+....||..+
T Consensus 443 Vv~i~GDG~f~m~~~EL~Ta~r~~---lpi~ivV~NN~~yg~ir~~q 486 (570)
T PRK06725 443 VICIAGDASFQMNIQELQTIAENN---IPVKVFIINNKFLGMVRQWQ 486 (570)
T ss_pred EEEEECCHHHHHHHHHHHHHHHHC---CCCEEEEEECCCHHHHHHHH
T ss_conf 899977527752299999999968---99389999797205999999
No 170
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=44.03 E-value=17 Score=16.72 Aligned_cols=88 Identities=17% Similarity=0.191 Sum_probs=42.7
Q ss_pred HHHHHHHCC--CC-EEEEEHHHHHHHHHHHHHHCCCCCCEEEEE-------EECCCCHHHHHHH-HHCCC----CEE-EE
Q ss_conf 999999749--97-899779999999999998614479789996-------4107999999999-97399----289-86
Q gi|254780371|r 18 LEKLAHVVQ--TP-FYCYSTTAIEKNYLTFSNAFDGMDTMVCYA-------LKANSNQAVIKTL-AHLGS----GLD-IV 81 (431)
Q Consensus 18 l~~La~~~g--TP-~yV~d~~~i~~n~~~l~~a~~~~~~~i~yA-------vKaN~~~~il~~l-~~~G~----g~d-v~ 81 (431)
+.+-|++.+ -| |.+.+.+.++.-++...+.= .+..+-++ --+-.....++.+ .+.+. +.| +.
T Consensus 9 ll~~Ake~~yAvpAfN~~nlE~~~AileaA~e~~--sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV~lHlDHg~ 86 (286)
T COG0191 9 LLDKAKENGYAVPAFNINNLETLQAILEAAEEEK--SPVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPVALHLDHGA 86 (286)
T ss_pred HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHC--CCEEEEECCCHHHHCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 9999998597545663368999999999999858--99899946118877052889999999999977998899777899
Q ss_pred CHHHHHHHHHCCCCCCCEEECCCCCCCH
Q ss_conf 8999865221257843124447754201
Q gi|254780371|r 82 SEGELRRALAAPVPAERIVFSGVGKTID 109 (431)
Q Consensus 82 S~~El~~al~~G~~~~~Ii~~g~~k~~~ 109 (431)
|..-...|.++||. -+.+.|.-.+-+
T Consensus 87 ~~~~~~~ai~~GFs--SvMiDgS~~p~e 112 (286)
T COG0191 87 SFEDCKQAIRAGFS--SVMIDGSHLPFE 112 (286)
T ss_pred CHHHHHHHHHCCCC--EEEECCCCCCHH
T ss_conf 99999999756882--587538757788
No 171
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=43.95 E-value=23 Score=15.71 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=21.0
Q ss_pred HHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCEEECCCCCCCHHHHH-HHHCCCCCCCCCCCH
Q ss_conf 9999999973992898689998652212578431244477542012444-420687233332202
Q gi|254780371|r 65 QAVIKTLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGVGKTIDEIDL-ALQSGIYCFNVESES 128 (431)
Q Consensus 65 ~~il~~l~~~G~g~dv~S~~El~~al~~G~~~~~Ii~~g~~k~~~~l~~-ai~~gv~~i~vDs~~ 128 (431)
..+++.+...+--.-++|..+.-..+.-...+ ...+|.. ..+.|.. .-++++ .+.||--+
T Consensus 15 r~la~~L~~~~~~~~~ss~t~~g~~l~~~~~~--~~~~G~l-~~e~l~~~l~e~~i-~llIDATH 75 (257)
T COG2099 15 RALAKKLAAAPVDIILSSLTGYGAKLAEQIGP--VRVGGFL-GAEGLAAFLREEGI-DLLIDATH 75 (257)
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCCCHHCCCC--EEECCCC-CHHHHHHHHHHCCC-CEEEECCC
T ss_conf 99999862068617999703444241110588--6652768-87899999997498-88997887
No 172
>PRK11036 putative metallothionein SmtA; Provisional
Probab=43.91 E-value=18 Score=16.42 Aligned_cols=80 Identities=15% Similarity=0.112 Sum_probs=33.0
Q ss_pred HHHHHHH-----CCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEE--CHHHHHHHH
Q ss_conf 9999997-----499789977999999999999861447978999641079999999999739928986--899986522
Q gi|254780371|r 18 LEKLAHV-----VQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIV--SEGELRRAL 90 (431)
Q Consensus 18 l~~La~~-----~gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~--S~~El~~al 90 (431)
..+|+++ |||+==-+-...+.+-+.++-..++..+.+|.=+ = .-.-.+...+++.|..+-.+ |..=|..|.
T Consensus 6 Fd~ia~kF~~~iYgt~KG~iR~avl~~dl~~~l~~l~~~plrVLDv-G-~G~G~~a~~lA~~Gh~Vt~~D~S~~mL~~A~ 83 (256)
T PRK11036 6 FDDIAEKFSRNIYGTTKGQIRQAIVWQDLDRLLAELGPRPLRVLDA-G-GGEGQTAIKMAELGHQVTLCDLSAEMIQRAK 83 (256)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-C-CCCCHHHHHHHHCCCEEEEECCCHHHHHHHH
T ss_conf 6678999998454777228999999999999998469999839983-7-9877989999977997998669999999999
Q ss_pred ----HCCCCCCCEE
Q ss_conf ----1257843124
Q gi|254780371|r 91 ----AAPVPAERIV 100 (431)
Q Consensus 91 ----~~G~~~~~Ii 100 (431)
.+|+. +++-
T Consensus 84 ~~a~~~gv~-~~~~ 96 (256)
T PRK11036 84 QAAEAKGVS-DNMQ 96 (256)
T ss_pred HHHHHCCCC-CEEE
T ss_conf 998864966-1279
No 173
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=43.78 E-value=23 Score=15.69 Aligned_cols=131 Identities=15% Similarity=0.192 Sum_probs=65.0
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHHH-------CCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 420687233332202467687741-------1334421589987237786744333223344456887111134577764
Q gi|254780371|r 114 ALQSGIYCFNVESESELKTLNQRA-------VSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYAS 186 (431)
Q Consensus 114 ai~~gv~~i~vDs~~el~~l~~~a-------~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~~ 186 (431)
.++-|+..|-++....+..+.+.. .+.+.+.+|.+-.... .+|. +.-|.+++ +++..++
T Consensus 152 Li~gG~D~iLiET~~D~l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti~---------~sG~--tl~Gq~~~---a~~~~l~ 217 (311)
T COG0646 152 LIDGGADLILIETIFDTLNAKAAVFAAREVFEELGVRLPVMISGTIT---------DSGR--TLSGQTIE---AFLNSLE 217 (311)
T ss_pred HHHCCCCEEEEEHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE---------CCCE--ECCCCCHH---HHHHHHH
T ss_conf 98378758997522168989999999999987327765479999980---------3761--23798689---9999866
Q ss_pred HCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCC-CCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 15632200233556415644204899999999887653102666526880687-30002665455311456555654210
Q gi|254780371|r 187 TLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGG-LGIAYHSDHRPPSSSDYASLIHQYFG 265 (431)
Q Consensus 187 ~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGG-f~i~y~~~~~~~~~~~~~~~i~~~~~ 265 (431)
.. ++..+||.|++|- +.....++.+..+.+.+-..-++.-.-|..|+ +. | +.+.+.++..+.....
T Consensus 218 ~~-~~~~vGlNCa~Gp-----~~m~~~l~~ls~~~~~~vs~~PNAGLP~~~g~~~~--Y-----~~~p~~~a~~~~~f~~ 284 (311)
T COG0646 218 HL-GPDAVGLNCALGP-----DEMRPHLRELSRIADAFVSVYPNAGLPNAFGERAV--Y-----DLTPEYMAEALAEFAE 284 (311)
T ss_pred CC-CCCEEEECCCCCH-----HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC--C-----CCCHHHHHHHHHHHHH
T ss_conf 35-9747853456688-----99999999987416924998079999754688452--6-----8998999999999998
Q ss_pred CCCCEE
Q ss_conf 245303
Q gi|254780371|r 266 NLQCKI 271 (431)
Q Consensus 266 ~~~~~l 271 (431)
+-..++
T Consensus 285 ~g~vnI 290 (311)
T COG0646 285 EGGVNI 290 (311)
T ss_pred HCCCEE
T ss_conf 378416
No 174
>PRK08322 acetolactate synthase; Reviewed
Probab=43.27 E-value=24 Score=15.64 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=18.8
Q ss_pred CEEEEECCCCHHHHHHC--CCCCCCCCEEEEE-ECCEEEEEEE
Q ss_conf 89999679702333402--7788986659999-8896899982
Q gi|254780371|r 364 DLLYIEKTGAYGAVQSG--TYNSRLLIPEIMV-NGSQFHIIRP 403 (431)
Q Consensus 364 D~l~i~~~GAY~~s~~s--~fn~~p~p~~v~v-~~g~~~~ir~ 403 (431)
..++|..=|++.++... .--.+..|..++| +|+...+||.
T Consensus 426 ~vv~i~GDGsf~~~~qeL~Ta~r~~lpv~iiV~NN~~yg~i~~ 468 (547)
T PRK08322 426 KVLAVCGDGGFMMNSQELETAVRLGLPLVVLILNDDAYGMIRW 468 (547)
T ss_pred CEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHH
T ss_conf 7899975328766199999999968690899996894179999
No 175
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=43.21 E-value=24 Score=15.63 Aligned_cols=57 Identities=7% Similarity=-0.065 Sum_probs=28.5
Q ss_pred HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-----CCEEEEEECCEEC
Q ss_conf 9998876531026665268806873000266545531145655565421024-----5303441011120
Q gi|254780371|r 216 LLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQYFGNL-----QCKIILEPGRFLV 280 (431)
Q Consensus 216 ~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~~~~~~-----~~~l~~EPGR~lv 280 (431)
.+.+..+.+++.|+.=--+|+==|+| ..+.+.|.+.|.+.+.-. -+.|.+|||..+.
T Consensus 136 ~~~~ai~~~r~~gf~niniDLIyGlP--------~Qt~e~~~~~l~~~~~l~p~HiS~Y~L~ie~~T~~~ 197 (351)
T PRK08446 136 QIIKAIENAKKAGFKNISIDLIYNTK--------LDNKKLLKEELKLAKELPITHLSAYALTIEENTPFE 197 (351)
T ss_pred HHHHHHHHHHHCCCCEECHHHHCCCC--------CCCHHHHHHHHHHHHCCCCCEEECCCCEECCCCHHH
T ss_conf 99999999998499634225531799--------999999999999997489697974230446998233
No 176
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=42.42 E-value=25 Score=15.55 Aligned_cols=47 Identities=13% Similarity=0.112 Sum_probs=26.9
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHH-HHHHHCCC
Q ss_conf 49978997799999999999986144797899964107999999-99997399
Q gi|254780371|r 25 VQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVI-KTLAHLGS 76 (431)
Q Consensus 25 ~gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il-~~l~~~G~ 76 (431)
.||||.. ..=-+-++++++.||. ..|+-=.|+.-.+.+. +...+.|+
T Consensus 34 vGtpLi~---~~G~~~V~~lr~~~p~--k~I~aDlK~~D~g~~ea~~a~~aGA 81 (216)
T PRK13306 34 VGTILCL---AEGMKAVRVLRALYPD--KIIVADTKIADAGKILAKMAFEAGA 81 (216)
T ss_pred ECCHHHH---HHCHHHHHHHHHHCCC--CEEEEEEEECCCCHHHHHHHHHCCC
T ss_conf 6859999---8589999999987899--9799975323653899999997289
No 177
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=42.38 E-value=25 Score=15.55 Aligned_cols=33 Identities=12% Similarity=0.205 Sum_probs=22.6
Q ss_pred CCEEEEEEECCCHHHHHHCCCCCHHHHHCCCCC
Q ss_conf 896899982489889973088856886234321
Q gi|254780371|r 395 GSQFHIIRPRMTFQELIELDSIPAWLQKTPKQS 427 (431)
Q Consensus 395 ~g~~~~ir~ret~ed~~~~~~~p~~~~~~~~~~ 427 (431)
+.+.-.-|+.-.||..+..-.-|+.-++...++
T Consensus 370 D~~ms~AR~~ldWe~q~~lalDpe~ar~~~~~~ 402 (433)
T PRK13352 370 DDEMSKARKNLDWEKQFELALDPEKAREYRDER 402 (433)
T ss_pred HHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHCC
T ss_conf 999999988689999998725999999998444
No 178
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases; InterPro: IPR011830 Methanogenic archaea contain three closely related homologs of the 2-isopropylmalate synthases (LeuA) represented by IPR005671 from INTERPRO. Two of these in Methanococcus janaschii (MJ1392 - CimA ; MJ0503 - AksA ) have been characterised as catalyzing alternative reactions leaving the third (MJ1195) as the presumptive LeuA enzyme. CimA is citramalate (2-methylmalate) synthase, which condenses acetyl-CoA with pyruvate. This enzyme is believed to be involved in the biosynthesis of isoleucine in methanogens and possibly other species lacking threonine dehydratase. AksA is a homocitrate synthase which also produces (homo)2-citrate and (homo)3-citrate in the biosynthesis of Coenzyme B which is restricted solely to methanogenic archaea. Methanogens, then should and apparently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea, which lack a threonine dehydratase (mainly Euryarchaeota), should contain both CimA and LeuA genes. This is true for archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in IPR005671 from INTERPRO and one in IPR005675 from INTERPRO which may fulfil these roles. Proteins from other species, which have only one hit to this entry and lack threonine dehydratase, are very likely to be LeuA enzymes.; GO: 0046912 transferase activity transferring acyl groups acyl groups converted into alkyl on transfer, 0019752 carboxylic acid metabolic process.
Probab=42.38 E-value=25 Score=15.55 Aligned_cols=168 Identities=18% Similarity=0.326 Sum_probs=82.7
Q ss_pred EEEEECCCCHHHHHHHHHC-CCCEEEEC-----HHHHHHHHHCCCCC-------CCEEEC--CCCCCCHH--------HH
Q ss_conf 9964107999999999973-99289868-----99986522125784-------312444--77542012--------44
Q gi|254780371|r 56 CYALKANSNQAVIKTLAHL-GSGLDIVS-----EGELRRALAAPVPA-------ERIVFS--GVGKTIDE--------ID 112 (431)
Q Consensus 56 ~yAvKaN~~~~il~~l~~~-G~g~dv~S-----~~El~~al~~G~~~-------~~Ii~~--g~~k~~~~--------l~ 112 (431)
-||+-+--....+|.+.++ |..+|++| ...+..|+.+|++. +.|... =++|++++ ++
T Consensus 42 Gfpi~S~GE~~aiK~I~~~vGLnAEI~~l~RA~k~DID~AidcgvdsIh~fiaTSpiH~KYKl~~K~~devle~~veAvE 121 (371)
T TIGR02090 42 GFPIASEGEFEAIKKIAEEVGLNAEICSLARALKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKNKSRDEVLEKAVEAVE 121 (371)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 76314514578999999862896355101026731001564369877899804885787234888789999999999898
Q ss_pred HHHHCCCCC-CCCCCC--HHHHHHHHHH---CCCCCCEEEEEEEE-CCCCCCCCCCCCCCCCCCCCC-CCCCCCHHHHHH
Q ss_conf 442068723-333220--2467687741---13344215899872-377867443332233444568-871111345777
Q gi|254780371|r 113 LALQSGIYC-FNVESE--SELKTLNQRA---VSLGKKAPIAFRVN-PDINANTHKKISTGKKEDKFG-IPIHQIHSLYAY 184 (431)
Q Consensus 113 ~ai~~gv~~-i~vDs~--~el~~l~~~a---~~~~~~~~I~lRin-p~~~~~~~~~~~tg~~~sKFG-i~~~~~~~~~~~ 184 (431)
+|-++|... |..+.- ++++.|.++. .+.|.. ||| || | -| +.|.....+++.
T Consensus 122 YAKEHGLiVEfSAEDATRtd~dfLIk~~k~A~eAGAD-----Ri~~~D----------T------VGV~~P~km~~l~k~ 180 (371)
T TIGR02090 122 YAKEHGLIVEFSAEDATRTDIDFLIKVFKKAEEAGAD-----RINVAD----------T------VGVLTPQKMEELIKK 180 (371)
T ss_pred HHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCC-----EEEECC----------C------CCCCCHHHHHHHHHH
T ss_conf 7752573553177887658678999998713321677-----755078----------5------563682679999999
Q ss_pred HHHCCCC---CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCC--CCHHHHHHH
Q ss_conf 6415632---20023355641564420489999999988765310266652688068730002665455--311456555
Q gi|254780371|r 185 ASTLPGV---KISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRP--PSSSDYASL 259 (431)
Q Consensus 185 ~~~~~~l---~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~--~~~~~~~~~ 259 (431)
+++ .+ ...++||| .|.. .+.+..+..+..=.++ .+ -.+| |+| +++ ..+|+..-+
T Consensus 181 ~k~--~~kKd~~~sVHCH-----NDFG--lAtANsi~gv~aGA~~--vH-~TvN---GiG------ERAGNAaLEEVV~A 239 (371)
T TIGR02090 181 IKE--NVKKDLPVSVHCH-----NDFG--LATANSIAGVLAGAEQ--VH-VTVN---GIG------ERAGNAALEEVVMA 239 (371)
T ss_pred HHH--HHCCCCCEEEEEE-----CCCC--HHHHHHHHHHHCCCEE--EE-EEEC---CCC------CCHHHHHHHHHHHH
T ss_conf 998--6358870588620-----8601--8899999997228357--73-5555---761------01345889999999
Q ss_pred HHHHHC
Q ss_conf 654210
Q gi|254780371|r 260 IHQYFG 265 (431)
Q Consensus 260 i~~~~~ 265 (431)
|...++
T Consensus 240 L~~LYG 245 (371)
T TIGR02090 240 LKVLYG 245 (371)
T ss_pred HHHHCC
T ss_conf 898714
No 179
>PRK02621 consensus
Probab=42.20 E-value=25 Score=15.53 Aligned_cols=45 Identities=16% Similarity=0.249 Sum_probs=27.5
Q ss_pred EEECCCCCCCHHHHHHHHCCCCCCCCCCC--HHHHHHHHHHCCCCCC
Q ss_conf 24447754201244442068723333220--2467687741133442
Q gi|254780371|r 99 IVFSGVGKTIDEIDLALQSGIYCFNVESE--SELKTLNQRAVSLGKK 143 (431)
Q Consensus 99 Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~--~el~~l~~~a~~~~~~ 143 (431)
|.+.|-.++.++++.+++.|+.-+.+.|. ..-+.+.+++...+.+
T Consensus 77 i~vGGGIrs~e~~~~ll~~GadkVii~s~a~~np~~~~~~~~~fG~q 123 (254)
T PRK02621 77 LTVGGGISSLEGIKELLRAGADKVSLNSAAVRDPDLVRQASDRFGSQ 123 (254)
T ss_pred EEEECCEEEHHHHHHHHHCCCCEEEECCHHHHCCCHHHHHHHHCCCC
T ss_conf 89963353579999999749998999886764735445568756984
No 180
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=41.99 E-value=25 Score=15.51 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=12.6
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q ss_conf 56442048999999998876
Q gi|254780371|r 203 QIDQIESFHKAFKLLRDLTQ 222 (431)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~ 222 (431)
.+.+++.+..+++++++...
T Consensus 162 rV~~~~eL~~Al~~A~~~~~ 181 (202)
T cd02006 162 RVTKPEELAAAFEQAKKLMA 181 (202)
T ss_pred EECCHHHHHHHHHHHHHHHC
T ss_conf 97999999999999998751
No 181
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=41.38 E-value=25 Score=15.45 Aligned_cols=195 Identities=15% Similarity=0.155 Sum_probs=100.9
Q ss_pred HCCCCCCEEEEEEECCCCHHHHHHHHHC-CCCEEEECHHHHHHHHHCCCCCCC-EEE--CCCCCCCHH-HHHHHHCCCCC
Q ss_conf 6144797899964107999999999973-992898689998652212578431-244--477542012-44442068723
Q gi|254780371|r 47 AFDGMDTMVCYALKANSNQAVIKTLAHL-GSGLDIVSEGELRRALAAPVPAER-IVF--SGVGKTIDE-IDLALQSGIYC 121 (431)
Q Consensus 47 a~~~~~~~i~yAvKaN~~~~il~~l~~~-G~g~dv~S~~El~~al~~G~~~~~-Ii~--~g~~k~~~~-l~~ai~~gv~~ 121 (431)
++|++++.=.--..++.+|.|++-|... +-|--..+..=+-+...+||.-.- -.| |...-.++. ++.|++.|+..
T Consensus 28 ~~p~~~~~~~~~~~s~r~~~v~~nl~~~~~~Grl~gtG~l~ILpvDQG~EH~~~~sFa~Np~~~DP~~~~~LAie~g~~a 107 (348)
T PRK09250 28 YLPGPDYVDRVMIDSDRNPGVLRNLQRLLNHGRLAGTGYLSILPVDQGFEHGAGASFAPNPLYFDPENIVQLAIEAGCNA 107 (348)
T ss_pred CCCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCH
T ss_conf 69998257666304689878999999998458557875089997555565687656788967668488999887247403
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHCCCCCHHHHHHHH
Q ss_conf 3332202467687741133442158998723778674433322334445688711113-457776415632200233556
Q gi|254780371|r 122 FNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIH-SLYAYASTLPGVKISGVDMHI 200 (431)
Q Consensus 122 i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~-~~~~~~~~~~~l~l~GlH~H~ 200 (431)
+. ..+-.|...+++..-+++..|.+|-.-. ++. .+++ ++.. .-.+.+-++ |..-+|...+.
T Consensus 108 ~A----~~lG~l~~~a~~ya~~iP~ilKlN~~~~------L~~---~~~~----dQ~~~~sV~dA~rL-Ga~AVG~TIY~ 169 (348)
T PRK09250 108 VA----STLGVLEAVARKYAHRIPFILKLNHNEL------LSY---PNTY----DQALTASVEDALRL-GAVAVGATIYF 169 (348)
T ss_pred HH----HHHHHHHHHHHHHCCCCCEEEEECCCCC------CCC---CCCC----CCCCCCCHHHHHHC-CCCEEEEEEEC
T ss_conf 45----5454787767753443777999557654------689---9987----53400469999854-76465427846
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEE--ECCCCCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 41564420489999999988765310266652688--068730002665455311456555654210
Q gi|254780371|r 201 GSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHID--VGGGLGIAYHSDHRPPSSSDYASLIHQYFG 265 (431)
Q Consensus 201 GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ld--iGGGf~i~y~~~~~~~~~~~~~~~i~~~~~ 265 (431)
||.. -.+.++++.+++.+.++.|+..-... =|+.|.-.. +.+...|+..|++.+...++
T Consensus 170 GS~~-----~~~mi~E~~~i~~eAh~~GL~tVlW~YpRG~a~kkeg-D~etA~Dl~ayAAhlAa~LG 230 (348)
T PRK09250 170 GSEE-----SRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDG-DYHTAADLTGQANHLAATIG 230 (348)
T ss_pred CCHH-----HHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC-CCHHHHHHHHHHHHHHHHHC
T ss_conf 9754-----7999999999999999769808999724785445578-81157888889999999855
No 182
>PRK08617 acetolactate synthase; Reviewed
Probab=40.86 E-value=26 Score=15.40 Aligned_cols=40 Identities=10% Similarity=0.114 Sum_probs=20.0
Q ss_pred CEEEEECCCCHHHHHHC--CCCCCCCCEEEEE-ECCEEEEEEE
Q ss_conf 89999679702333402--7788986659999-8896899982
Q gi|254780371|r 364 DLLYIEKTGAYGAVQSG--TYNSRLLIPEIMV-NGSQFHIIRP 403 (431)
Q Consensus 364 D~l~i~~~GAY~~s~~s--~fn~~p~p~~v~v-~~g~~~~ir~ 403 (431)
..++|..=|++.|+... ..-.+..|..++| +|+...+++.
T Consensus 434 ~Vv~i~GDGsf~m~~qEL~Ta~r~~lpi~iiV~NN~~yg~i~~ 476 (552)
T PRK08617 434 KVVSVSGDGGFLFSAMELETAVRLKLNIVHIIWNDGHYDMVEF 476 (552)
T ss_pred CEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH
T ss_conf 2899988548862199999999958893899996895237889
No 183
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=40.83 E-value=26 Score=15.39 Aligned_cols=142 Identities=23% Similarity=0.363 Sum_probs=78.2
Q ss_pred CCEEEECHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEE--ECC
Q ss_conf 928986899986522125784312444775420124444206872333322024676877411334421589987--237
Q gi|254780371|r 76 SGLDIVSEGELRRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRV--NPD 153 (431)
Q Consensus 76 ~g~dv~S~~El~~al~~G~~~~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRi--np~ 153 (431)
-|+|++|..||+. .|+. .|+-+++..+-++..-++|+.. |-||| +|-
T Consensus 41 kGaDis~l~~lE~---~Gvk----f~d~ng~~qD~~~iLK~~GvNy------------------------vRlRvwndP~ 89 (403)
T COG3867 41 KGADISSLIELEN---SGVK----FFDTNGVRQDALQILKNHGVNY------------------------VRLRVWNDPY 89 (403)
T ss_pred CCCCHHHHHHHHH---CCCE----EECCCCHHHHHHHHHHHCCCCE------------------------EEEEEECCCC
T ss_conf 4455799999997---3866----7736871778999999749676------------------------9999853886
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHH---HHHHHCCCCCHHHHHHHHH-------HCCCCCHHHH--------HH-H
Q ss_conf 78674433322334445688711113457---7764156322002335564-------1564420489--------99-9
Q gi|254780371|r 154 INANTHKKISTGKKEDKFGIPIHQIHSLY---AYASTLPGVKISGVDMHIG-------SQIDQIESFH--------KA-F 214 (431)
Q Consensus 154 ~~~~~~~~~~tg~~~sKFGi~~~~~~~~~---~~~~~~~~l~l~GlH~H~G-------S~~~~~~~~~--------~~-~ 214 (431)
+ + ..+++|---.++..++ ++++.. |+++ -+.||-. -| ..+.+|. ++ .
T Consensus 90 -d-------s---ngn~yggGnnD~~k~ieiakRAk~~-GmKV-l~dFHYSDfwaDPakQ-~kPkaW~~l~fe~lk~avy 155 (403)
T COG3867 90 -D-------S---NGNGYGGGNNDLKKAIEIAKRAKNL-GMKV-LLDFHYSDFWADPAKQ-KKPKAWENLNFEQLKKAVY 155 (403)
T ss_pred -C-------C---CCCCCCCCCCHHHHHHHHHHHHHHC-CCEE-EEECCCHHHCCCHHHC-CCCHHHHHCCHHHHHHHHH
T ss_conf -6-------7---8986688750189999999998746-8679-8640211101680101-7847766348999999999
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEC----CCCCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 99998876531026665268806----8730002665455311456555654210
Q gi|254780371|r 215 KLLRDLTQQLRSNGHNIQHIDVG----GGLGIAYHSDHRPPSSSDYASLIHQYFG 265 (431)
Q Consensus 215 ~~~~~~~~~l~~~g~~~~~ldiG----GGf~i~y~~~~~~~~~~~~~~~i~~~~~ 265 (431)
+........++..|+.++.+-+| |||-.| .++. -+++.+++.+++..+
T Consensus 156 ~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp--~Ge~-~~f~k~a~L~n~g~~ 207 (403)
T COG3867 156 SYTKYVLTTMKKEGILPDMVQVGNETNGGFLWP--DGEG-RNFDKMAALLNAGIR 207 (403)
T ss_pred HHHHHHHHHHHHCCCCCCCEEECCCCCCCEECC--CCCC-CCHHHHHHHHHHHHH
T ss_conf 999999999997489945167545467713246--7887-676899999997765
No 184
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HUPF/HYPC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process . They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation , . .
Probab=40.61 E-value=26 Score=15.37 Aligned_cols=28 Identities=21% Similarity=0.538 Sum_probs=18.5
Q ss_pred CCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEE
Q ss_conf 7615899981000566665621005668888899996
Q gi|254780371|r 333 RLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIE 369 (431)
Q Consensus 333 ~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~ 369 (431)
.....-++.|..|+.+ +.+++||||.+|
T Consensus 27 ~~~v~l~Lv~ksC~~N---------~~~~~GdyvLvH 54 (88)
T TIGR00074 27 KREVSLDLVGKSCDEN---------EEVKVGDYVLVH 54 (88)
T ss_pred EEEEEEEECCCCCCCC---------CCCCCCCEEEEE
T ss_conf 4667641235544678---------599998776320
No 185
>PRK08949 consensus
Probab=40.41 E-value=26 Score=15.35 Aligned_cols=56 Identities=14% Similarity=0.131 Sum_probs=30.1
Q ss_pred HHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-----CCEEEEEECCEEC
Q ss_conf 998876531026665268806873000266545531145655565421024-----5303441011120
Q gi|254780371|r 217 LRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQYFGNL-----QCKIILEPGRFLV 280 (431)
Q Consensus 217 ~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~~~~~~-----~~~l~~EPGR~lv 280 (431)
+.+..+.+++.|+.---+|+==|+| ..+.+++.+.|.+.+.-. -+.|.+|||..+.
T Consensus 145 ~~~a~~~~~~~gf~~iniDLiyglP--------~Qt~~~~~~~l~~~~~l~p~hiS~Y~L~ie~~t~~~ 205 (378)
T PRK08949 145 AKRAAKLASGLGLRSFNLDLMHGLP--------DQSLEEALDDLRQAIALNPPHLSWYQLTIEPNTLFG 205 (378)
T ss_pred HHHHHHHHHHCCCCCEEECCCCCCC--------CCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHH
T ss_conf 9999999986599625023236899--------989999999999996669983788746864897376
No 186
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain; InterPro: IPR012821 Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by IPR012822 from INTERPRO..
Probab=40.24 E-value=26 Score=15.33 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=8.5
Q ss_pred HHHCCCCCCCEEECCCCCCCHHH
Q ss_conf 22125784312444775420124
Q gi|254780371|r 89 ALAAPVPAERIVFSGVGKTIDEI 111 (431)
Q Consensus 89 al~~G~~~~~Ii~~g~~k~~~~l 111 (431)
|.+-|+|.++++..|.+-.+++|
T Consensus 172 s~~wGlpLe~~Lvag~~g~De~m 194 (241)
T TIGR02471 172 SYRWGLPLEQLLVAGDSGNDEEM 194 (241)
T ss_pred HHHHCCCHHHEEEEECCCCCHHH
T ss_conf 99827974581454068885455
No 187
>pfam03435 Saccharop_dh Saccharopine dehydrogenase. This family comprised of three structural domains that can not be separated in the linear sequence. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase. The saccharopine dehydrogenase can also function as a saccharopine reductase.
Probab=40.12 E-value=27 Score=15.32 Aligned_cols=64 Identities=14% Similarity=0.141 Sum_probs=33.9
Q ss_pred EEEECHHHHHHHHHCCCCCCCEEEC--CCCCCCHHHHHHHHCCCCCCCC-CCCHHHHHHHHHHCCCCCCEE
Q ss_conf 8986899986522125784312444--7754201244442068723333-220246768774113344215
Q gi|254780371|r 78 LDIVSEGELRRALAAPVPAERIVFS--GVGKTIDEIDLALQSGIYCFNV-ESESELKTLNQRAVSLGKKAP 145 (431)
Q Consensus 78 ~dv~S~~El~~al~~G~~~~~Ii~~--g~~k~~~~l~~ai~~gv~~i~v-Ds~~el~~l~~~a~~~~~~~~ 145 (431)
+|+....++...++ +. +++.+ ++.....-++.|+++|+..+.+ ...++...+.+.|++.+..+=
T Consensus 53 ~d~~~~~~l~~~~~-~~---diVv~~~p~~~~~~i~~~c~~~g~~yvd~s~~~~~~~~l~~~a~~ag~~~~ 119 (384)
T pfam03435 53 VDADNYEALAALLK-EG---DLVINLAPPFLSLTVLKACIETGVHYVDTSYLREAQLALHEKAKEAGVTAV 119 (384)
T ss_pred ECCCCHHHHHHHHH-CC---CEEEECCCHHHCHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 57789999999871-28---999999843416999999997399757534366889999997765696899
No 188
>PRK02145 consensus
Probab=40.03 E-value=27 Score=15.31 Aligned_cols=52 Identities=13% Similarity=0.253 Sum_probs=30.5
Q ss_pred CEEECCCCCCCHHHHHHHHCCCCCCCCCCC--HHHHHHHHHHCCCCCC-EEEEEE
Q ss_conf 124447754201244442068723333220--2467687741133442-158998
Q gi|254780371|r 98 RIVFSGVGKTIDEIDLALQSGIYCFNVESE--SELKTLNQRAVSLGKK-APIAFR 149 (431)
Q Consensus 98 ~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~--~el~~l~~~a~~~~~~-~~I~lR 149 (431)
.|.+.|-.++.++++.+++.|+..+.+.|. ..-+.+.+.+...|.+ +-++|-
T Consensus 77 Pi~vGGGIrs~e~~~~ll~~GadkVii~s~a~~np~~v~~~~~~fG~q~Iv~siD 131 (257)
T PRK02145 77 PLTVGGGVRAVEDVRRLLNAGADKVSMNSSAVANPQLVRDAADKYGSQCIVVAID 131 (257)
T ss_pred CEEEECCCCCHHHHHHHHHCCCCEEEEHHHHHHCCCHHHHHHHHCCCCCEEEEEE
T ss_conf 4896277304688999998199889841556659302245787669834499999
No 189
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=39.80 E-value=27 Score=15.29 Aligned_cols=41 Identities=15% Similarity=0.282 Sum_probs=19.4
Q ss_pred CCCHHHHHHHHHHCCCCC------H----HHHHHHHHHHHHHHHHHC-CCCC
Q ss_conf 322002335564156442------0----489999999988765310-2666
Q gi|254780371|r 190 GVKISGVDMHIGSQIDQI------E----SFHKAFKLLRDLTQQLRS-NGHN 230 (431)
Q Consensus 190 ~l~l~GlH~H~GS~~~~~------~----~~~~~~~~~~~~~~~l~~-~g~~ 230 (431)
++++.+=|-++-+|.+++ + .+..-++.+.++.+.+++ .|.+
T Consensus 160 GVEIH~ahGyLl~qFLSp~~N~RtDeYGGSlENR~Rf~~Eii~aVr~~vg~d 211 (361)
T cd04747 160 GIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPD 211 (361)
T ss_pred EEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCC
T ss_conf 8995104465899835874388988789987984736999999999972998
No 190
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=39.62 E-value=27 Score=15.27 Aligned_cols=196 Identities=15% Similarity=0.151 Sum_probs=85.8
Q ss_pred CEEEECCCCHHHHHHHCC-----CCEEEEEHHH--HHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 858987842999999749-----9789977999--999999999861447978999641079999999999739928986
Q gi|254780371|r 9 GSLHAENVSLEKLAHVVQ-----TPFYCYSTTA--IEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIV 81 (431)
Q Consensus 9 ~~l~i~~~~l~~La~~~g-----TP~yV~d~~~--i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~ 81 (431)
+...-+.....+.+.+|| |-+.+-..+. .-..+.++-+...+.+. .+-+-.|| .++.+.||
T Consensus 12 ~~~~~~~~~Yi~~~~~~Gf~~IFtsl~~~~~~~~~~~~~~~ell~~Anklg~--~vivDvnP-----sil~~l~~----- 79 (360)
T COG3589 12 RSPKEKDIAYIDRMHKYGFKRIFTSLLIPEEDAELYFHRFKELLKEANKLGL--RVIVDVNP-----SILKELNI----- 79 (360)
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCC--EEEEECCH-----HHHHHCCC-----
T ss_conf 7861667999999987380113442666883277899999999999986596--89997487-----77755279-----
Q ss_pred CHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHCCCC-CCCCCCCHH-HHHHHHHHCCCCCCEEEEEEEECCCCCCCC
Q ss_conf 899986522125784312444775420124444206872-333322024-676877411334421589987237786744
Q gi|254780371|r 82 SEGELRRALAAPVPAERIVFSGVGKTIDEIDLALQSGIY-CFNVESESE-LKTLNQRAVSLGKKAPIAFRVNPDINANTH 159 (431)
Q Consensus 82 S~~El~~al~~G~~~~~Ii~~g~~k~~~~l~~ai~~gv~-~i~vDs~~e-l~~l~~~a~~~~~~~~I~lRinp~~~~~~~ 159 (431)
|...+......|+.+=|+=+ +.|.+++...-.++.. .+|.-...+ +..|.+.-.+. . + -.+.|
T Consensus 80 S~~~l~~f~e~G~~glRlD~---gfS~eei~~ms~~~lkieLN~S~it~~l~~l~~~~an~--~-----n-----l~~cH 144 (360)
T COG3589 80 SLDNLSRFQELGVDGLRLDY---GFSGEEIAEMSKNPLKIELNASTITELLDSLLAYKANL--E-----N-----LEGCH 144 (360)
T ss_pred CHHHHHHHHHHHHHHEEECC---CCCHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHCCCH--H-----H-----HHHCC
T ss_conf 86778999873113265236---68888999972588089973425189999999735355--5-----4-----20010
Q ss_pred CCCCCCCCCCCC-CCCCCCCHHHHHHHHHCCCCCHHHHHHHHHH---------CCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 333223344456-8871111345777641563220023355641---------564420489999999988765310266
Q gi|254780371|r 160 KKISTGKKEDKF-GIPIHQIHSLYAYASTLPGVKISGVDMHIGS---------QIDQIESFHKAFKLLRDLTQQLRSNGH 229 (431)
Q Consensus 160 ~~~~tg~~~sKF-Gi~~~~~~~~~~~~~~~~~l~l~GlH~H~GS---------~~~~~~~~~~~~~~~~~~~~~l~~~g~ 229 (431)
+..- .++ |++.+-+.+--+..+++ +++...+=.-.++ +....+.+... ....-+..+.+.|
T Consensus 145 NyYP-----r~yTGLS~e~f~~kn~~fk~~-~i~t~AFis~~~~~g~r~~~~~GlpTlE~hR~~--~p~~qak~l~~~g- 215 (360)
T COG3589 145 NYYP-----RPYTGLSREHFKRKNEIFKEY-NIKTAAFISSDGAEGPRGPLYEGLPTLEAHRYV--EPFVQAKDLFKTG- 215 (360)
T ss_pred CCCC-----CCCCCCCHHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCCCCCCCCCCHHHHCCC--CHHHHHHHHHHHC-
T ss_conf 4568-----866674699999988998855-974589984587677666200486616874378--8777899999838-
Q ss_pred CCCEEEECCCCC
Q ss_conf 652688068730
Q gi|254780371|r 230 NIQHIDVGGGLG 241 (431)
Q Consensus 230 ~~~~ldiGGGf~ 241 (431)
++-+=+|-+|+
T Consensus 216 -iD~VlIgd~~~ 226 (360)
T COG3589 216 -IDDVLIGDQFP 226 (360)
T ss_pred -CCEEEECCCCC
T ss_conf -87599638889
No 191
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase; InterPro: IPR005941 The lysine/diaminopimelic acid branch of the aspartate pathway produces the essential amino acid lysine via the intermediate meso-diaminopimelic acid (meso-DAP), which is also a vital cell wall component in Gram-negative bacteria . The production of dihydropicolinate from aspartate-semialdehyde controls flux into the lysine/diaminopimelic acid pathway. Three variants of this pathway exist, differing in how tetrahydropicolinate (formed by reduction of dihydropicolinate) is metabolised to meso-DAP. One variant, the most commonly found one in archaea and bacteria, uses primarily succinyl intermediates, while a second variant, found only in Bacillus, utilises primarily acetyl intermediates. In the third variant, found in some Gram-positive bacteria, a dehydrogenase converts tetrahydropicolinate directly to meso-DAP. In all variants meso-DAP is subsequently converted to lysine by a decarboxylase, or, in Gram-negative bacteria, assimilated into the cell wall. Evidence exists that a fourth, currently unknown, variant of this pathway may function in plants . Succinyl-diaminopimelate desuccinylase (3.5.1.18 from EC) hydrolyses N-succinyl-L,L-diaminopimelic acid which is required for the bacterial synthesis of lysine and meso-diaminopimelic acid. This group of bacterial sequences belong to the MEROPS peptidase family M20 (clan MH), subfamily M20A (non-peptidase homologs). ; GO: 0009014 succinyl-diaminopimelate desuccinylase activity, 0009089 lysine biosynthetic process via diaminopimelate.
Probab=39.58 E-value=21 Score=16.02 Aligned_cols=143 Identities=15% Similarity=0.174 Sum_probs=85.0
Q ss_pred CCCHHHHHHHHH---CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC------CCCEEEECCCCCC----
Q ss_conf 111345777641---563220023355641564420489999999988765310266------6526880687300----
Q gi|254780371|r 176 HQIHSLYAYAST---LPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGH------NIQHIDVGGGLGI---- 242 (431)
Q Consensus 176 ~~~~~~~~~~~~---~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~------~~~~ldiGGGf~i---- 242 (431)
.++-++++.=++ .-.|.+.|++=||.=-=+-..+...++-.+.+|+..-.+.|- .+.+=||=||-|+
T Consensus 171 k~~GD~iK~GRRGSi~g~L~i~G~QGHVAYPh~A~NP~H~~~p~L~~L~~~~lD~G~e~F~ptsl~I~NI~aGtG~~NVI 250 (383)
T TIGR01246 171 KKLGDVIKNGRRGSITGNLTIKGIQGHVAYPHLANNPVHKAAPVLAELTAIKLDEGNEFFPPTSLQITNIHAGTGANNVI 250 (383)
T ss_pred CCCCCEEEECCCEEEEEEEEEEEEECCCCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCC
T ss_conf 11688678423113544478988751104645415870369999999861128896343589753224557888988766
Q ss_pred ----------CCCCCCCCCCHHHHHHHHHHH-HCCC--CCEE-EEEECCEECCC--CCEEEEEEEEE-CC-CCCCCCEEE
Q ss_conf ----------026654553114565556542-1024--5303-44101112036--63258887640-34-689742200
Q gi|254780371|r 243 ----------AYHSDHRPPSSSDYASLIHQY-FGNL--QCKI-ILEPGRFLVAD--VGILVTKVISI-KK-SADKTFVIL 304 (431)
Q Consensus 243 ----------~y~~~~~~~~~~~~~~~i~~~-~~~~--~~~l-~~EPGR~lva~--ag~ll~~V~~v-K~-~~~~~~~~v 304 (431)
.|..+.....+++....|.+. .+++ +++| |--.|....-+ .|-|+-++... .+ ...+.-+-+
T Consensus 251 Pg~L~v~FN~Rfs~e~~~e~~k~~v~~il~~hCkeY~l~Y~lew~~Sg~pFlT~P~~g~l~~~~~~~i~~~~~~~P~lsT 330 (383)
T TIGR01246 251 PGELKVQFNIRFSTEVSEETLKSRVEAILDQHCKEYGLDYDLEWSLSGEPFLTNPIDGKLIDKVREAIEETNGIKPELST 330 (383)
T ss_pred CHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 11120013410286677178999999999742200388416987215855278888763899999999997086755347
Q ss_pred CCCCCCCCCCHHHC
Q ss_conf 55300011001110
Q gi|254780371|r 305 DVAMNDFMRPTLYD 318 (431)
Q Consensus 305 D~g~~~~~~p~~~~ 318 (431)
-||+.|--.=+.|+
T Consensus 331 ~GGTSDgRFia~~G 344 (383)
T TIGR01246 331 SGGTSDGRFIALMG 344 (383)
T ss_pred CCCCCHHHHHHHHC
T ss_conf 89871699999754
No 192
>PRK09125 DNA ligase; Provisional
Probab=39.33 E-value=27 Score=15.24 Aligned_cols=27 Identities=19% Similarity=0.285 Sum_probs=16.1
Q ss_pred CCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEE
Q ss_conf 6888889999679702333402778898665999
Q gi|254780371|r 359 LPRPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIM 392 (431)
Q Consensus 359 ~l~~GD~l~i~~~GAY~~s~~s~fn~~p~p~~v~ 392 (431)
.+.+|.+|-+.-.|= .=++.||.|..+
T Consensus 245 pp~iG~~it~ky~~~-------T~~G~pRFp~f~ 271 (277)
T PRK09125 245 PPKIGSIITYKYRGL-------TKNGLPRFASFL 271 (277)
T ss_pred CCCCCCEEEEEEEEE-------CCCCCCCCCEEE
T ss_conf 976898999998720-------699976687278
No 193
>PRK09970 xanthine dehydrogenase subunit XdhA; Provisional
Probab=39.11 E-value=27 Score=15.27 Aligned_cols=13 Identities=38% Similarity=0.641 Sum_probs=7.0
Q ss_pred CCEEEECCCCCCC
Q ss_conf 5268806873000
Q gi|254780371|r 231 IQHIDVGGGLGIA 243 (431)
Q Consensus 231 ~~~ldiGGGf~i~ 243 (431)
+..-++|||||..
T Consensus 238 V~~~~vGGgFG~K 250 (762)
T PRK09970 238 VIKPYVGGGFGNK 250 (762)
T ss_pred EEECCCCCCCCCC
T ss_conf 9713248877877
No 194
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]
Probab=38.77 E-value=23 Score=15.76 Aligned_cols=36 Identities=3% Similarity=-0.057 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHC
Q ss_conf 999999999986144797899964107999999999973
Q gi|254780371|r 36 AIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHL 74 (431)
Q Consensus 36 ~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~ 74 (431)
.+.+-++++...++......- ..||..-++.++...
T Consensus 5 ~~~~i~~~l~~~~p~~~~~l~---~~~pf~lLva~iLSa 40 (211)
T COG0177 5 KALEILDRLRELYPEPKTELD---FKDPFELLVAVILSA 40 (211)
T ss_pred HHHHHHHHHHHHCCCCCCCCC---CCCCHHHHHHHHHHC
T ss_conf 699999999987888767557---688389999999944
No 195
>pfam00491 Arginase Arginase family.
Probab=38.62 E-value=28 Score=15.17 Aligned_cols=106 Identities=20% Similarity=0.315 Sum_probs=47.1
Q ss_pred HHHHHHCC-CCCCCEEECCCC---CCCHHHHHHHHCCCCCCCCCCCHH------HHHHHHHHCCCCCCEEEEEEEECCCC
Q ss_conf 86522125-784312444775---420124444206872333322024------67687741133442158998723778
Q gi|254780371|r 86 LRRALAAP-VPAERIVFSGVG---KTIDEIDLALQSGIYCFNVESESE------LKTLNQRAVSLGKKAPIAFRVNPDIN 155 (431)
Q Consensus 86 l~~al~~G-~~~~~Ii~~g~~---k~~~~l~~ai~~gv~~i~vDs~~e------l~~l~~~a~~~~~~~~I~lRinp~~~ 155 (431)
++.++..+ +++++++.-|-- .+..+.+.+-++|+..+..+.+.+ ++.+.+..+ ..-+|.|=+..++-
T Consensus 133 ~~~~~~~~~~~~~~~~~vGiR~~~~~~~~~~~~~~~g~~~~~~~~i~~~g~~~~~~~~~~~~~---~~~~iylS~DiDvl 209 (274)
T pfam00491 133 FRRALEEGLLDPERVVQIGIRSVDNEEFEYEYAKEHGVRVFTMRDIDERGLAAVLEEILEALG---GTDPVYLSFDIDVL 209 (274)
T ss_pred HHHHHHCCCCCHHHEEEEECCCCCCCHHHHHHHHHCCCEEEEHHHHHHCCHHHHHHHHHHHHC---CCCEEEEEEECCCC
T ss_conf 999976158882128999426899998999999976998988999885089999999999745---68818999853743
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHH
Q ss_conf 6744333223344456887111134577764156322002335
Q gi|254780371|r 156 ANTHKKISTGKKEDKFGIPIHQIHSLYAYASTLPGVKISGVDM 198 (431)
Q Consensus 156 ~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~~~~~~l~l~GlH~ 198 (431)
-.+.. -.|| -....|++..|+.++++.+... .+++|+.+
T Consensus 210 Dps~a-Pgtg-~P~pgGL~~~e~~~~~~~~~~~--~~v~g~Di 248 (274)
T pfam00491 210 DPAFA-PGTG-TPEPGGLTPRELLAILRGLAGS--LNVVGLDV 248 (274)
T ss_pred CHHHC-CCCC-CCCCCCCCHHHHHHHHHHHHCC--CCEEEEEE
T ss_conf 75338-8889-9989998999999999998626--99899999
No 196
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=38.45 E-value=28 Score=15.15 Aligned_cols=21 Identities=14% Similarity=0.255 Sum_probs=14.2
Q ss_pred CCCCHHHHHHHCCCCEEEEEH
Q ss_conf 784299999974997899779
Q gi|254780371|r 14 ENVSLEKLAHVVQTPFYCYST 34 (431)
Q Consensus 14 ~~~~l~~La~~~gTP~yV~d~ 34 (431)
-+.....|++++|++-++|.+
T Consensus 22 td~~fR~l~~~~ga~~l~~TE 42 (323)
T COG0042 22 TDLPFRRLARELGAYDLLYTE 42 (323)
T ss_pred CCHHHHHHHHHHCCCCEEEEE
T ss_conf 668999999995887528974
No 197
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=38.41 E-value=28 Score=15.15 Aligned_cols=21 Identities=33% Similarity=0.267 Sum_probs=8.6
Q ss_pred CCCCCEEECCCCCCCHHHHHH
Q ss_conf 784312444775420124444
Q gi|254780371|r 94 VPAERIVFSGVGKTIDEIDLA 114 (431)
Q Consensus 94 ~~~~~Ii~~g~~k~~~~l~~a 114 (431)
.+.+.++.+..+++..||-..
T Consensus 12 ~~~~~~vvs~~G~~sreL~~~ 32 (188)
T cd03371 12 APATAAVVSTTGMTSRELFEL 32 (188)
T ss_pred CCCCCEEEECCCCCHHHHHHH
T ss_conf 899998997999885999999
No 198
>TIGR00069 hisD histidinol dehydrogenase; InterPro: IPR001692 Histidinol dehydrogenase (1.1.1.23 from EC) (HDH) catalyses the terminal step in the biosynthesis of histidine in bacteria, fungi, and plants, the four-electron oxidation of L-histidinol to histidine. In 4-electron dehydrogenases, a single active site catalyses 2 separate oxidation steps: oxidation of the substrate alcohol to an intermediate aldehyde; and oxidation of the aldehyde to the product acid, in this case His . The reaction proceeds via a tightly- or covalently-bound inter-mediate, and requires the presence of 2 NAD molecules . By contrast with most dehydrogenases, the substrate is bound before the NAD coenzyme . A Cys residue has been implicated in the catalytic mechanism of the second oxidative step . In bacteria HDH is a single chain polypeptide; in fungi it is the C-terminal domain of a multifunctional enzyme which catalyzes three different steps of histidine biosynthesis; and in plants it is expressed as nuclear encoded protein precursor which is exported to the chloroplast .; GO: 0004399 histidinol dehydrogenase activity, 0000105 histidine biosynthetic process.
Probab=38.39 E-value=28 Score=15.14 Aligned_cols=34 Identities=24% Similarity=0.425 Sum_probs=23.4
Q ss_pred EEECCCCHHHHHHHHHCC-CCEEE----ECHHHHHHHHH
Q ss_conf 641079999999999739-92898----68999865221
Q gi|254780371|r 58 ALKANSNQAVIKTLAHLG-SGLDI----VSEGELRRALA 91 (431)
Q Consensus 58 AvKaN~~~~il~~l~~~G-~g~dv----~S~~El~~al~ 91 (431)
.||.+-+.+|++.-.+-. +|+++ +|..|.+.|.+
T Consensus 33 ~Vk~~GD~Al~~yt~kFDfaGv~~~~l~Vs~eE~eeA~~ 71 (435)
T TIGR00069 33 NVKAEGDEALREYTRKFDFAGVELENLRVSAEEIEEAYK 71 (435)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHH
T ss_conf 988742399999988518654156365368789999873
No 199
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=38.07 E-value=4.4 Score=20.61 Aligned_cols=28 Identities=25% Similarity=0.254 Sum_probs=17.4
Q ss_pred CCCCCCH---HHHHHHHCCCCCCCCCCCHHH
Q ss_conf 7754201---244442068723333220246
Q gi|254780371|r 103 GVGKTID---EIDLALQSGIYCFNVESESEL 130 (431)
Q Consensus 103 g~~k~~~---~l~~ai~~gv~~i~vDs~~el 130 (431)
|.+||.. .|....+.|-+.|+.|.-.+.
T Consensus 195 GtGKS~~ir~LL~qIR~RGdrAIIyD~~G~F 225 (732)
T PRK13700 195 GAGKSEVIRRLANYARQRGDMVVIYDRSGEF 225 (732)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 8889999999999999729958999399853
No 200
>pfam12224 Amidoligase_2 Putative amidoligase enzyme. This family of proteins are likely to act as amidoligase enzymes Protein in this family are found in conserved gene neighborhoods encoding a glutamine amidotransferase-like thiol peptidase (in proteobacteria) or an Aig2 family cyclotransferase protein (in firmicutes).
Probab=37.85 E-value=24 Score=15.64 Aligned_cols=51 Identities=20% Similarity=0.311 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHCCCCC----HHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHC
Q ss_conf 111134577764156322----0023355641564--420489999999988765310
Q gi|254780371|r 175 IHQIHSLYAYASTLPGVK----ISGVDMHIGSQID--QIESFHKAFKLLRDLTQQLRS 226 (431)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~----l~GlH~H~GS~~~--~~~~~~~~~~~~~~~~~~l~~ 226 (431)
.+++.++.+.+++. |.. =+|+|.|++-... +.+.+...++.+..+...+..
T Consensus 87 l~~l~~l~~~Lr~~-ga~~tn~scG~hVHin~~~~~~~~~~l~~~~~~~~~~e~~l~~ 143 (250)
T pfam12224 87 LEQLQELVRALRRA-GAKGTNASCGFHVHINAEPPDLTAQTLRNLLQAYALLEDWLRK 143 (250)
T ss_pred HHHHHHHHHHHHHC-CCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999982-8834677547778715756788989999999999999999998
No 201
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=37.72 E-value=29 Score=15.07 Aligned_cols=39 Identities=10% Similarity=0.037 Sum_probs=17.6
Q ss_pred EEEEECCCCHHHHHHC--CCCCCCCCEEEEE-ECCEEEEEEE
Q ss_conf 9999679702333402--7788986659999-8896899982
Q gi|254780371|r 365 LLYIEKTGAYGAVQSG--TYNSRLLIPEIMV-NGSQFHIIRP 403 (431)
Q Consensus 365 ~l~i~~~GAY~~s~~s--~fn~~p~p~~v~v-~~g~~~~ir~ 403 (431)
.+++..=|++.+++.. .-..+..|..++| +|+..-.||.
T Consensus 436 vv~i~GDG~f~m~~~EL~Ta~r~~lpv~ivV~NN~~~g~i~~ 477 (560)
T PRK08527 436 VINFTGDGSILMNIQELMTAVEYGIPVINIILNNNFLGMVRQ 477 (560)
T ss_pred EEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH
T ss_conf 899978179866599999999968895899996995189999
No 202
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=37.53 E-value=23 Score=15.78 Aligned_cols=60 Identities=22% Similarity=0.129 Sum_probs=28.9
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 02335564156442048999999998876531026665268806873000266545531145655565421
Q gi|254780371|r 194 SGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQYF 264 (431)
Q Consensus 194 ~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~~~ 264 (431)
-|+..|.+||.. ......+..++.+ ....+.+-.-++|||||... ....+.++..+....
T Consensus 354 d~l~v~~stQ~p--~~~r~~lA~~Lgl----~~~~VrVi~~~vGGgFG~K~-----~~~~e~~aalaA~~~ 413 (848)
T TIGR03311 354 DGVIIYTSTQGV--YDEQRELASLLGL----PKEKIRVINKFVGGGFGGKE-----DMSVQHHAALLAWAT 413 (848)
T ss_pred CEEEEEECCCCC--HHHHHHHHHHHCC----CHHHEEEEECCCCCCCCCCC-----CCCHHHHHHHHHHHH
T ss_conf 959999888570--8999999998699----85478999567688777777-----765899999999997
No 203
>TIGR01212 TIGR01212 radical SAM protein, TIGR01212 family; InterPro: IPR005911 This uncharacterised protein family shows significant similarity to IPR005910 from INTERPRO, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain..
Probab=37.25 E-value=29 Score=15.03 Aligned_cols=95 Identities=18% Similarity=0.289 Sum_probs=56.4
Q ss_pred CCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEE--CCCCCCCCCCCC-
Q ss_conf 88711113457776415632200233556415644204899999999887653102666526880--687300026654-
Q gi|254780371|r 172 GIPIHQIHSLYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDV--GGGLGIAYHSDH- 248 (431)
Q Consensus 172 Gi~~~~~~~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldi--GGGf~i~y~~~~- 248 (431)
|-+..+..+++..+++. ||++++ |.=+| +=.+.+...++.+..++ .+.-.|+++--|-+ |.=+.=.|..++
T Consensus 161 gHd~~~y~~a~~~~~kr-GikVC~-H~I~G---LPgE~~~~~~eTak~~~-~l~vdGiKiH~LhvvkGt~m~k~Y~~G~~ 234 (307)
T TIGR01212 161 GHDFACYVDAVKRARKR-GIKVCS-HVILG---LPGEDREEMLETAKIVA-SLDVDGIKIHPLHVVKGTKMAKQYEKGEL 234 (307)
T ss_pred CCCHHHHHHHHHHHHHC-CCEEEE-EEEEC---CCCCCHHHHHHHHHHHH-HCCCCEEEEEEEEEEECCHHHHHHHCCCE
T ss_conf 37878999999999765-988999-98742---89888889999999998-37988488720178735757887545740
Q ss_pred CCCCHHHHHHHHHHHHCCCCCEEE
Q ss_conf 553114565556542102453034
Q gi|254780371|r 249 RPPSSSDYASLIHQYFGNLQCKII 272 (431)
Q Consensus 249 ~~~~~~~~~~~i~~~~~~~~~~l~ 272 (431)
...+.++|.+..++.++.+.|.++
T Consensus 235 ~~l~~e~Y~~~~~d~le~lpP~vv 258 (307)
T TIGR01212 235 KTLSLEEYISLACDFLEHLPPEVV 258 (307)
T ss_pred EECCHHHHHHHHHHHHHCCCCCEE
T ss_conf 104767799999999850898559
No 204
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=36.86 E-value=30 Score=14.99 Aligned_cols=186 Identities=18% Similarity=0.204 Sum_probs=88.3
Q ss_pred EECCEEEECCCCHHHHHHH---CCCCEE-----EEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCC
Q ss_conf 6688589878429999997---499789-----97799999999999986144797899964107999999999973992
Q gi|254780371|r 6 YFEGSLHAENVSLEKLAHV---VQTPFY-----CYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSG 77 (431)
Q Consensus 6 ~~~~~l~i~~~~l~~La~~---~gTP~y-----V~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g 77 (431)
.+++.|-.||--=.+|.++ ...|++ +-+++.|++-.+.+-+| +..+ +.||+-..--..+.+.|.+
T Consensus 9 l~~~~lilDGgmGteL~~~G~~~~~~lWs~~~ll~~Pd~V~~iH~~yi~A----GAdi---I~TNTy~a~~~~l~~~g~~ 81 (308)
T PRK09485 9 LAQSPLILDGALATELEARGCDLSDPLWSAKVLLENPELIYQVHLDYFRA----GADI---AITASYQATFQGFAARGLS 81 (308)
T ss_pred HCCCEEEEECHHHHHHHHCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHC----CCCE---EEECCCCCCHHHHHHCCCC
T ss_conf 53990999897699999869999986545666611929999999999980----8787---8724550378989874999
Q ss_pred EE-EECH--HHHHHHHHC-------CCCCCCE-E----------------ECCC-CCCCHHH--------HHHHHCCCCC
Q ss_conf 89-8689--998652212-------5784312-4----------------4477-5420124--------4442068723
Q gi|254780371|r 78 LD-IVSE--GELRRALAA-------PVPAERI-V----------------FSGV-GKTIDEI--------DLALQSGIYC 121 (431)
Q Consensus 78 ~d-v~S~--~El~~al~~-------G~~~~~I-i----------------~~g~-~k~~~~l--------~~ai~~gv~~ 121 (431)
-+ +... .=+++|+++ .....++ | |.|. ..+.+++ +..++.||..
T Consensus 82 ~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~VaGslgP~g~~l~~g~ey~g~~~~~~~~~~~~~~~qi~~l~~~gvD~ 161 (308)
T PRK09485 82 EAEAEALIRRSVELAKEARDDVWAEKPQRPYLLVAGSVGPYGAYLADGSEYRGDYGLSVEELQDFHRPRIEALLDAGADL 161 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 99999999999999999999975413688870698415754442378866678789999999999999999997278988
Q ss_pred CCCCCCHHHH---HHHHHHCCC-CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHH
Q ss_conf 3332202467---687741133-442158998723778674433322334445688711113457776415632200233
Q gi|254780371|r 122 FNVESESELK---TLNQRAVSL-GKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYASTLPGVKISGVD 197 (431)
Q Consensus 122 i~vDs~~el~---~l~~~a~~~-~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~~~~~~l~l~GlH 197 (431)
|.++.+..++ .+.+.+++. +.++=+.+.++.+ +. ..-|-+.++ +++.+...+.+..+|+-
T Consensus 162 il~ET~~~~~E~~~~~~~~~~~~~~pv~~s~t~~~~-----------~~--l~~G~~l~~---a~~~~~~~~~v~~vGiN 225 (308)
T PRK09485 162 LALETIPNLDEAEALVELLKEFPQVPAWLSFTLRDG-----------TH--ISDGTPLAE---AAAALAAYPQVVAVGIN 225 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECCC-----------CC--CCCCCCHHH---HHHHHHHCCCCCEEEEC
T ss_conf 999603999999999999985579968999997689-----------84--189991999---99999737885368631
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 55641564420489999999988
Q gi|254780371|r 198 MHIGSQIDQIESFHKAFKLLRDL 220 (431)
Q Consensus 198 ~H~GS~~~~~~~~~~~~~~~~~~ 220 (431)
|.+++....+++.+.+.
T Consensus 226 ------C~~p~~~~~~l~~l~~~ 242 (308)
T PRK09485 226 ------CTAPELVTPAIATLKAV 242 (308)
T ss_pred ------CCCHHHHHHHHHHHHHH
T ss_conf ------78999999999999970
No 205
>TIGR03196 pucD xanthine dehydrogenase D subunit. This gene has been characterized in B. subtilis as the molybdopterin binding-subunit of xanthine dehydrogenase (pucD), acting in conjunction with pucC, the FAD-binding subunit and pucE, the FeS-binding subunit. The more common XDH complex (GenProp0640) includes the xdhB gene which is related to pucD. It appears that most of the relatives of pucD outside of this narrow clade are involved in other processes as they are found in unrelated genomic contexts, contain the more common XDH complex and/or do not appear to process purines to allantoin.
Probab=36.69 E-value=18 Score=16.46 Aligned_cols=14 Identities=21% Similarity=0.328 Sum_probs=6.4
Q ss_pred EEEEEE--CCEEEEEE
Q ss_conf 599998--89689998
Q gi|254780371|r 389 PEIMVN--GSQFHIIR 402 (431)
Q Consensus 389 ~~v~v~--~g~~~~ir 402 (431)
+||-|+ -|+++++|
T Consensus 637 aeVeVD~~TG~v~v~r 652 (768)
T TIGR03196 637 AEVDVDLDLGDVKLID 652 (768)
T ss_pred EEEEEECCCCCEEEEE
T ss_conf 9999988998189999
No 206
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=36.60 E-value=30 Score=14.96 Aligned_cols=14 Identities=14% Similarity=0.133 Sum_probs=7.3
Q ss_pred CCCHHHHHHHHCCC
Q ss_conf 42012444420687
Q gi|254780371|r 106 KTIDEIDLALQSGI 119 (431)
Q Consensus 106 k~~~~l~~ai~~gv 119 (431)
.+..||..|++++.
T Consensus 80 m~~~EL~Ta~~~~l 93 (172)
T cd02004 80 FSGMELETAVRYNL 93 (172)
T ss_pred CCCHHHHHHHHHCC
T ss_conf 24078889998498
No 207
>pfam08643 DUF1776 Fungal family of unknown function (DUF1776). This is a fungal family of unknown function. One of the proteins in this family has been localized to the mitochondria.
Probab=36.50 E-value=30 Score=14.95 Aligned_cols=48 Identities=10% Similarity=0.278 Sum_probs=36.3
Q ss_pred EECCCCCCCCCCCCCC--CCHHHHHHHHHHHHCCCCCEE-EEEECCEECCC
Q ss_conf 8068730002665455--311456555654210245303-44101112036
Q gi|254780371|r 235 DVGGGLGIAYHSDHRP--PSSSDYASLIHQYFGNLQCKI-ILEPGRFLVAD 282 (431)
Q Consensus 235 diGGGf~i~y~~~~~~--~~~~~~~~~i~~~~~~~~~~l-~~EPGR~lva~ 282 (431)
.+.|.++.||+..+.. ..++.+.+.++.+++.+++++ .+|||-.=++.
T Consensus 154 Si~g~~~~P~~~~y~ask~ale~~s~~LR~El~~~gI~V~~i~pG~i~~~~ 204 (296)
T pfam08643 154 SISSSLNPPYHAPEALVSSALSTFFTILTRELRPHNIDVTQIKLGNLDLSN 204 (296)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 631145687535999999999999999998743159659999445304577
No 208
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=36.13 E-value=31 Score=14.91 Aligned_cols=15 Identities=27% Similarity=0.222 Sum_probs=7.4
Q ss_pred HCCCCCHHHHHCCCC
Q ss_conf 308885688623432
Q gi|254780371|r 412 ELDSIPAWLQKTPKQ 426 (431)
Q Consensus 412 ~~~~~p~~~~~~~~~ 426 (431)
.+||+=.-+.++|..
T Consensus 610 GfdV~~~~lfqTPeE 624 (715)
T PRK09426 610 GFDVDIGPLFQTPEE 624 (715)
T ss_pred CEEEEECCCCCCHHH
T ss_conf 606861675589999
No 209
>pfam00977 His_biosynth Histidine biosynthesis protein. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in this family. Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. The enzymes in this Pfam entry are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. The structure of HisA is known to be a TIM barrel fold. In some archaeal HisA proteins the TIM barrel is composed of two tandem repeats of a half barrel. This family belong to the common phosphate binding site TIM barrel family.
Probab=35.94 E-value=31 Score=14.89 Aligned_cols=11 Identities=55% Similarity=0.960 Sum_probs=7.1
Q ss_pred CCCEEEECCCCC
Q ss_conf 652688068730
Q gi|254780371|r 230 NIQHIDVGGGLG 241 (431)
Q Consensus 230 ~~~~ldiGGGf~ 241 (431)
+++++ .+||.+
T Consensus 191 ~~pii-~~GGv~ 201 (229)
T pfam00977 191 NIPVI-ASGGVG 201 (229)
T ss_pred CCCEE-EECCCC
T ss_conf 99899-985899
No 210
>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]
Probab=35.63 E-value=31 Score=14.86 Aligned_cols=89 Identities=16% Similarity=0.163 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCE
Q ss_conf 22002335564156442048999999998876531026665268806873000266545531145655565421024530
Q gi|254780371|r 191 VKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQYFGNLQCK 270 (431)
Q Consensus 191 l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~~~~~~~~~ 270 (431)
|-+.|=| |..+....-.....+++++.++. .+.|=-=||+++.-..++..---..-...+.+.+++.++.
T Consensus 87 iil~Gd~-----Q~~~~~gqyel~~~~Ld~a~e~g-----~~~IyTLGGy~vGkl~eep~VlGA~ts~eLi~~lke~gV~ 156 (258)
T COG2047 87 IILVGDT-----QATSSEGQYELTGKILDIAKEFG-----ARMIYTLGGYGVGKLVEEPRVLGAVTSKELIEELKEHGVE 156 (258)
T ss_pred EEEECCC-----CCCCCCHHHHHHHHHHHHHHHCC-----CCEEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHHCCEE
T ss_conf 9994565-----34675216889999999999729-----7479970685568435776377740889999999972957
Q ss_pred E-EEEECCEECCCCCEEEEE
Q ss_conf 3-441011120366325888
Q gi|254780371|r 271 I-ILEPGRFLVADVGILVTK 289 (431)
Q Consensus 271 l-~~EPGR~lva~ag~ll~~ 289 (431)
+ --|||-.||+.+|.++.=
T Consensus 157 fr~~epgGgIVGasGLllg~ 176 (258)
T COG2047 157 FRSGEPGGGIVGASGLLLGF 176 (258)
T ss_pred ECCCCCCCCEECHHHHHHHH
T ss_conf 13589987443024666445
No 211
>TIGR00299 TIGR00299 conserved hypothetical protein TIGR00299; InterPro: IPR002822 The proteins in this family have no known function..
Probab=35.57 E-value=31 Score=14.85 Aligned_cols=102 Identities=14% Similarity=0.284 Sum_probs=52.5
Q ss_pred CCCCHHHHHHH-HHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC-CC-EEEECCCCCCCCCCCCCCCCHHHHHHHHHH---
Q ss_conf 63220023355-6415644204899999999887653102666-52-688068730002665455311456555654---
Q gi|254780371|r 189 PGVKISGVDMH-IGSQIDQIESFHKAFKLLRDLTQQLRSNGHN-IQ-HIDVGGGLGIAYHSDHRPPSSSDYASLIHQ--- 262 (431)
Q Consensus 189 ~~l~l~GlH~H-~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~-~~-~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~--- 262 (431)
.|+++.-.||| +|.. ++..+.+-.+..+ +.|.-.+.. .. =|+.|+|| +....+..|-..-+..+.++-
T Consensus 117 HG~~~~~vhFHEVGa~----DAi~DvvGa~~~~-~~L~l~~~e~y~~pv~~G~G~-Vr~~HG~~PVP~PAv~eiL~~~~l 190 (410)
T TIGR00299 117 HGVDLEEVHFHEVGAA----DAIADVVGAVLAL-EKLNLKDDELYSLPVAVGSGF-VRAAHGLLPVPAPAVLEILKGRQL 190 (410)
T ss_pred CCCCCCCCEEEEECCC----CCCHHHHHHHHHH-HHCCCCCCCEEECCCCCCCCE-EECCCCCCCCCHHHHHHHHCCCCC
T ss_conf 5703566203422687----5101577888988-730732340133100138865-861276888670268897537740
Q ss_pred --HHCCCCCEEEEEECCEECCCCCEEEEE--EEEECCC
Q ss_conf --210245303441011120366325888--7640346
Q gi|254780371|r 263 --YFGNLQCKIILEPGRFLVADVGILVTK--VISIKKS 296 (431)
Q Consensus 263 --~~~~~~~~l~~EPGR~lva~ag~ll~~--V~~vK~~ 296 (431)
......-+|..=.|-||...-.--+.+ -.-+|+-
T Consensus 191 ~v~~~~~~~EL~TPTGaAi~~~~~~~~~~~P~~~~~ev 228 (410)
T TIGR00299 191 PVVDDGLGEELVTPTGAAILVTLAKKLKPKPPFRVKEV 228 (410)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 38768888424581379999987565357988641463
No 212
>KOG0781 consensus
Probab=35.47 E-value=31 Score=14.84 Aligned_cols=10 Identities=10% Similarity=-0.001 Sum_probs=3.4
Q ss_pred EEECCCHHHH
Q ss_conf 9824898899
Q gi|254780371|r 401 IRPRMTFQEL 410 (431)
Q Consensus 401 ir~ret~ed~ 410 (431)
|-+-.|.+|.
T Consensus 537 ltK~DTvdd~ 546 (587)
T KOG0781 537 LTKFDTVDDK 546 (587)
T ss_pred EEECCHHHHH
T ss_conf 8712506568
No 213
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=35.26 E-value=16 Score=16.84 Aligned_cols=53 Identities=30% Similarity=0.394 Sum_probs=23.4
Q ss_pred EEECHH--HHHHHHH-CCCCCCCEE-ECCC---CCCCHH---HHHHHHCCCCCCCCCCCHHHH
Q ss_conf 986899--9865221-257843124-4477---542012---444420687233332202467
Q gi|254780371|r 79 DIVSEG--ELRRALA-APVPAERIV-FSGV---GKTIDE---IDLALQSGIYCFNVESESELK 131 (431)
Q Consensus 79 dv~S~~--El~~al~-~G~~~~~Ii-~~g~---~k~~~~---l~~ai~~gv~~i~vDs~~el~ 131 (431)
++.|.+ -|..|+. -|+|..||+ +.|+ +|+.=- +..|-+.|...+-+|++.-++
T Consensus 34 ~~i~TGs~~lD~alg~GGiP~GRivei~G~essGKTtlal~~ia~aQk~gg~~~~iDaE~a~d 96 (325)
T cd00983 34 EVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALD 96 (325)
T ss_pred CEECCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHCCC
T ss_conf 346268199999975899668808999889877799999999999873598399996254259
No 214
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=35.22 E-value=32 Score=14.81 Aligned_cols=86 Identities=21% Similarity=0.296 Sum_probs=54.9
Q ss_pred HHHHHHCCCCCC---CCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 444420687233---33220246768774113344215899872377867443332233444568871111345777641
Q gi|254780371|r 111 IDLALQSGIYCF---NVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYAST 187 (431)
Q Consensus 111 l~~ai~~gv~~i---~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~~~ 187 (431)
|+...+.|+..+ ++-|++|.+.+.+..++.+++.-|.+-+|- +..+.+ |-+. .+++..++.
T Consensus 140 ie~l~~ag~Dlla~ETip~i~Ea~Aiv~l~~~~s~p~wISfT~~d------~~~lr~-------Gt~l---~eaa~~~~~ 203 (300)
T COG2040 140 IEALNEAGADLLACETLPNITEAEAIVQLVQEFSKPAWISFTLND------DTRLRD-------GTPL---SEAAAILAG 203 (300)
T ss_pred HHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECC------CCCCCC-------CCCH---HHHHHHHHC
T ss_conf 999986798678751568838999999999984876699999679------972678-------7529---999999815
Q ss_pred CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 5632200233556415644204899999999
Q gi|254780371|r 188 LPGVKISGVDMHIGSQIDQIESFHKAFKLLR 218 (431)
Q Consensus 188 ~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~ 218 (431)
++++-..|+ +|..++....+++.+.
T Consensus 204 ~~~iaa~gv------NC~~p~~~~a~i~~l~ 228 (300)
T COG2040 204 LPNIAALGV------NCCHPDHIPAAIEELS 228 (300)
T ss_pred CCCHHHHCC------CCCCHHHHHHHHHHHH
T ss_conf 723363120------4678676799999998
No 215
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=34.68 E-value=32 Score=14.76 Aligned_cols=37 Identities=19% Similarity=0.305 Sum_probs=16.8
Q ss_pred CEEEEECCCCHHHHHH-----CCCCCCCCCEEEEE-ECCEEEEEEE
Q ss_conf 8999967970233340-----27788986659999-8896899982
Q gi|254780371|r 364 DLLYIEKTGAYGAVQS-----GTYNSRLLIPEIMV-NGSQFHIIRP 403 (431)
Q Consensus 364 D~l~i~~~GAY~~s~~-----s~fn~~p~p~~v~v-~~g~~~~ir~ 403 (431)
..++|..=|+..++.. .+++ .|..++| +|+....||.
T Consensus 457 ~Vv~i~GDGsf~mt~qEL~Ta~r~~---lpi~iiV~NN~~yg~ir~ 499 (587)
T PRK06965 457 DVVCITGEGSIQMCIQELSTCLQYD---TPVKIISLNNRYLGMVRQ 499 (587)
T ss_pred CEEEEECCHHHHHHHHHHHHHHHHC---CCCEEEEEECCCHHHHHH
T ss_conf 5899988458876599999999968---992899995872359999
No 216
>TIGR03194 4hydrxCoA_A 4-hydroxybenzoyl-CoA reductase, alpha subunit. This model represents the largest chain, alpha, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=34.52 E-value=28 Score=15.13 Aligned_cols=10 Identities=20% Similarity=0.385 Sum_probs=4.6
Q ss_pred CCEEECCCCC
Q ss_conf 4220055300
Q gi|254780371|r 300 TFVILDVAMN 309 (431)
Q Consensus 300 ~~~~vD~g~~ 309 (431)
-++..|.|.-
T Consensus 628 ~~~~~D~G~v 637 (746)
T TIGR03194 628 VWVAVDCGKA 637 (746)
T ss_pred EEEEECCCHH
T ss_conf 9999903934
No 217
>TIGR02416 CO_dehy_Mo_lg carbon-monoxide dehydrogenase, large subunit; InterPro: IPR012780 Carbon monoxide dehydrogenases catalyse the reversible oxidation of carbon monoxide to carbon dioxide as shown below , : CO + H(2)O + A == CO(2) + AH(2) A variety of electron acceptors can be used by these enzymes including ferredoxin, methyl viologen and benzyl viologen. Under anaerobic conditions, carbon monoxide is utilised by a number of methanogenic archaea and acetogenic, sulphate-reducing or phototrophic bacteria. Under aerobic conditions carbon monoxide can be used as sole carbon and energy source by the carboxidotrophic bacteria, a taxonomically diverse group of obligate or facultative chemolithoautotrophic species. The anaerobic dehydrogenases are mostly nickel-containing iron-sulphur enzymes, while the The aerobic enzymes categorised so far are molybdenum-containing iron-sulphur proteins. This entry represents the large subunit of the molybdenum-containing carbon monoxide dehydrogenase found in aerobic bacteria. This enzyme is a dimer of heterotrimers, where each heterotrimer consists of a small iron-sulphur subunit, a medium FAD-containing flavoprotein subunit and a large molybdopterin-containign subunit which contains the active site , . The large subunit is divided into two domains. The N-terminal domain is composed of mainly of a five-and four-stranded mixed beta-sheet and interacts with the small and medium subunits. The C-terminal domain contains a region which interacts with its counterpart in the overall dimer, providing the main dimer contact, and a beta-sheet surrounded by alpha helices. The active site located in this subunit contains a novel dinuclear heterometal [CuSMo(=O)OH] cluster.; GO: 0005507 copper ion binding, 0018492 carbon-monoxide dehydrogenase (acceptor) activity, 0030151 molybdenum ion binding.
Probab=34.50 E-value=24 Score=15.63 Aligned_cols=39 Identities=15% Similarity=0.242 Sum_probs=16.2
Q ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 442158998723778674433322334445688711113
Q gi|254780371|r 141 GKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIH 179 (431)
Q Consensus 141 ~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~ 179 (431)
.+..++..|+...-..+.|+-..----.+-.|||.|++.
T Consensus 486 HPTG~~i~R~g~~sQGQGH~TTyAQIiA~ELGIP~e~I~ 524 (775)
T TIGR02416 486 HPTGSAIARLGTKSQGQGHETTYAQIIATELGIPAEDID 524 (775)
T ss_pred CCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCEE
T ss_conf 778837898630236986430466665555278801106
No 218
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=34.42 E-value=32 Score=14.73 Aligned_cols=39 Identities=10% Similarity=0.151 Sum_probs=19.0
Q ss_pred CEEEEECCCCHHHHHHC--CCCCCCCCEEEEE-ECCEEEEEE
Q ss_conf 89999679702333402--7788986659999-889689998
Q gi|254780371|r 364 DLLYIEKTGAYGAVQSG--TYNSRLLIPEIMV-NGSQFHIIR 402 (431)
Q Consensus 364 D~l~i~~~GAY~~s~~s--~fn~~p~p~~v~v-~~g~~~~ir 402 (431)
..+++..=|++.+++.. ..-.+..|..++| +|+....||
T Consensus 418 ~vv~i~GDGsf~m~~~EL~Ta~r~~lpi~ivV~NN~~yg~i~ 459 (521)
T PRK07092 418 RVIGLIGDGSANYSIQALWSAAQLKLPVTFVILNNGRYGALR 459 (521)
T ss_pred EEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHH
T ss_conf 499998445986019999999996889489999787127999
No 219
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=34.26 E-value=33 Score=14.71 Aligned_cols=42 Identities=14% Similarity=0.185 Sum_probs=21.7
Q ss_pred CEEEEECCCCHHHHHHC--CCCCCCCCEEEEE-ECCEEEEEEECC
Q ss_conf 89999679702333402--7788986659999-889689998248
Q gi|254780371|r 364 DLLYIEKTGAYGAVQSG--TYNSRLLIPEIMV-NGSQFHIIRPRM 405 (431)
Q Consensus 364 D~l~i~~~GAY~~s~~s--~fn~~p~p~~v~v-~~g~~~~ir~re 405 (431)
..+++..=|++.++... .--.+..|..++| +|+...+||..+
T Consensus 439 ~Vv~~~GDGsf~m~~~eL~Ta~r~~lpv~ivV~NN~~~g~i~~~q 483 (564)
T PRK08155 439 KVLCFSGDGSLMMNIQEMATAAENQLDVKIILMNNEALGLVHQQQ 483 (564)
T ss_pred CEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHH
T ss_conf 289997417864309999999995979089999699850778898
No 220
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=33.78 E-value=33 Score=14.66 Aligned_cols=26 Identities=19% Similarity=0.179 Sum_probs=15.1
Q ss_pred CHHHHHHHHHCCCCEEEECHHHHHHH
Q ss_conf 99999999973992898689998652
Q gi|254780371|r 64 NQAVIKTLAHLGSGLDIVSEGELRRA 89 (431)
Q Consensus 64 ~~~il~~l~~~G~g~dv~S~~El~~a 89 (431)
-+.+++.....|+-+...|..||...
T Consensus 49 E~gll~~a~~l~~pl~~f~~eeL~~v 74 (126)
T PRK07027 49 EAGLLALCARRGWPLVAFSAAQLAAS 74 (126)
T ss_pred CHHHHHHHHHHCCCEEEECHHHHHHC
T ss_conf 89999999981998799769999734
No 221
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=33.78 E-value=33 Score=14.66 Aligned_cols=13 Identities=23% Similarity=0.447 Sum_probs=6.6
Q ss_pred EEEEECCCCHHHH
Q ss_conf 9999679702333
Q gi|254780371|r 365 LLYIEKTGAYGAV 377 (431)
Q Consensus 365 ~l~i~~~GAY~~s 377 (431)
.++|..=|++.|+
T Consensus 456 Vv~i~GDG~f~m~ 468 (589)
T PRK07525 456 VVGFAGDGAWGIS 468 (589)
T ss_pred EEEEECCHHHHHH
T ss_conf 8999885687552
No 222
>TIGR00625 tfb2 Transcription factor tfb2; InterPro: IPR004598 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. The core-TFIIH basal transcription factor complex has six subunits, this is the p52 subunit.; GO: 0003702 RNA polymerase II transcription factor activity, 0006281 DNA repair, 0006355 regulation of transcription DNA-dependent, 0005634 nucleus.
Probab=33.70 E-value=5.7 Score=19.86 Aligned_cols=52 Identities=19% Similarity=0.058 Sum_probs=27.9
Q ss_pred CCCCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHC
Q ss_conf 22234677761589998100056666562100566888889999679702333402
Q gi|254780371|r 325 YIVNPAGDRLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQSG 380 (431)
Q Consensus 325 ~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~s~~s 380 (431)
+-++..+...+...+| .++.|.=.....-..+--|-+||=.|===|+|+.|.
T Consensus 300 PsvnedGanGksttdi----ttsdd~nkaGlknqdiPdGfiiVETNyrlYaYt~Sp 351 (507)
T TIGR00625 300 PSVNEDGANGKSTTDI----TTSDDKNKAGLKNQDIPDGFIIVETNYRLYAYTESP 351 (507)
T ss_pred CCCCCCCCCCCCCCCC----CCCCCHHHCCCCCCCCCCCEEEEEECCEEEEECCCH
T ss_conf 7745567777532222----246741222664466888517886355023113866
No 223
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family; InterPro: IPR011288 This entry describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4 , .; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0019512 lactose catabolic process via tagatose-6-phosphate.
Probab=33.59 E-value=33 Score=14.64 Aligned_cols=73 Identities=15% Similarity=0.181 Sum_probs=43.5
Q ss_pred CCHHHHHHHHCC--CCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 201244442068--723333220246768774113344215899872377867443332233444568871111345777
Q gi|254780371|r 107 TIDEIDLALQSG--IYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAY 184 (431)
Q Consensus 107 ~~~~l~~ai~~g--v~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~ 184 (431)
+++.|+.|-..| |-.|||=|++.++-+.|.|.++..+ |-| +||..-++- +-.|++.++...
T Consensus 4 tk~mL~~AQ~GGYAvPAFNIHNlET~QvvvEtAAel~SP--VIl-------AGTPGTf~y--------aG~e~l~al~~~ 66 (282)
T TIGR01858 4 TKEMLRDAQKGGYAVPAFNIHNLETIQVVVETAAELRSP--VIL-------AGTPGTFKY--------AGTEYLVALCSA 66 (282)
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCC--EEE-------ECCCCCHHH--------HHHHHHHHHHHH
T ss_conf 579999873268132640021289999999998622788--364-------068641011--------007889999999
Q ss_pred HH-HCCCCCHHHHHH
Q ss_conf 64-156322002335
Q gi|254780371|r 185 AS-TLPGVKISGVDM 198 (431)
Q Consensus 185 ~~-~~~~l~l~GlH~ 198 (431)
.. +| -...-||.
T Consensus 67 ~a~~Y--~~PlAlHL 79 (282)
T TIGR01858 67 AAKKY--DMPLALHL 79 (282)
T ss_pred HHHHC--CCCCEECC
T ss_conf 98617--99603103
No 224
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=33.53 E-value=34 Score=14.64 Aligned_cols=42 Identities=14% Similarity=0.149 Sum_probs=21.2
Q ss_pred CEEEEECCCCHHHHHH--CCCCCCCCCEEEEE-ECCEEEEEEECC
Q ss_conf 8999967970233340--27788986659999-889689998248
Q gi|254780371|r 364 DLLYIEKTGAYGAVQS--GTYNSRLLIPEIMV-NGSQFHIIRPRM 405 (431)
Q Consensus 364 D~l~i~~~GAY~~s~~--s~fn~~p~p~~v~v-~~g~~~~ir~re 405 (431)
-.++|..=|+..+++. .....+..|..++| +|+....+|..|
T Consensus 460 ~Vv~i~GDGsf~m~~~EL~Ta~r~~lpv~vvV~NN~~~g~~~~~q 504 (581)
T PRK06112 460 RVICLVGDGGFAHVWAELETARRMGVPVTIVVLNNGILGFQKHAE 504 (581)
T ss_pred CEEEEECCCHHHCCHHHHHHHHHHCCCEEEEEEECCCCCHHHHHH
T ss_conf 689998860664359999999997879089999786311788998
No 225
>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=33.31 E-value=21 Score=16.03 Aligned_cols=43 Identities=33% Similarity=0.414 Sum_probs=17.4
Q ss_pred HHHH-CCCCCCCEE-ECCC---CCCC---HHHHHHHHCCCCCCCCCCCHHH
Q ss_conf 5221-257843124-4477---5420---1244442068723333220246
Q gi|254780371|r 88 RALA-APVPAERIV-FSGV---GKTI---DEIDLALQSGIYCFNVESESEL 130 (431)
Q Consensus 88 ~al~-~G~~~~~Ii-~~g~---~k~~---~~l~~ai~~gv~~i~vDs~~el 130 (431)
.||- =|+|..||+ +.|| +||. .-+..+-+.|...+-+|++.-+
T Consensus 42 ~aLg~GGlP~GRi~ei~G~essGKTtlal~~ia~aQk~gg~~~~iD~E~a~ 92 (322)
T pfam00154 42 IALGIGGLPKGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHAL 92 (322)
T ss_pred HHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHC
T ss_conf 987589977870899988987778999999999997349938998536605
No 226
>pfam02738 Ald_Xan_dh_C2 Molybdopterin-binding domain of aldehyde dehydrogenase.
Probab=33.21 E-value=25 Score=15.56 Aligned_cols=14 Identities=21% Similarity=0.477 Sum_probs=7.9
Q ss_pred EEEEEE--CCEEEEEE
Q ss_conf 599998--89689998
Q gi|254780371|r 389 PEIMVN--GSQFHIIR 402 (431)
Q Consensus 389 ~~v~v~--~g~~~~ir 402 (431)
++|-|+ -|+++++|
T Consensus 467 aeVeVD~~TG~v~v~~ 482 (543)
T pfam02738 467 VEVEVDCLTGDVKVLR 482 (543)
T ss_pred EEEEEECCCCCEEEEE
T ss_conf 9999988999789849
No 227
>PRK10416 cell division protein FtsY; Provisional
Probab=33.01 E-value=34 Score=14.58 Aligned_cols=53 Identities=13% Similarity=0.169 Sum_probs=27.2
Q ss_pred CCCEEEEEC--CCCHHHHHHCCCCC-CCCCEEEEEE-CCEE----------------EEEEECCCHHHHHHCC
Q ss_conf 888999967--97023334027788-9866599998-8968----------------9998248988997308
Q gi|254780371|r 362 PGDLLYIEK--TGAYGAVQSGTYNS-RLLIPEIMVN-GSQF----------------HIIRPRMTFQELIELD 414 (431)
Q Consensus 362 ~GD~l~i~~--~GAY~~s~~s~fn~-~p~p~~v~v~-~g~~----------------~~ir~ret~ed~~~~~ 414 (431)
+-..|.+.| +|--+.+.+-.||. .+.-..|+-. ||.+ +.|=-.|.++||-.++
T Consensus 414 P~e~lLVlDa~tGQna~~qak~F~e~~~ltGiIlTKlDGtAKGG~~lsi~~~~~~PI~fiG~GE~idDL~~F~ 486 (499)
T PRK10416 414 PHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFK 486 (499)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHCCCCC
T ss_conf 9748999778767789999999844279975999656778852599999999883959986798822066779
No 228
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=32.90 E-value=34 Score=14.57 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=7.5
Q ss_pred EEEEEHHHHHHHHHHHHH
Q ss_conf 899779999999999998
Q gi|254780371|r 29 FYCYSTTAIEKNYLTFSN 46 (431)
Q Consensus 29 ~yV~d~~~i~~n~~~l~~ 46 (431)
|.|.+.+.++.-++.-.+
T Consensus 18 fNv~n~E~~~AvleAAee 35 (340)
T cd00453 18 VNCVGTDSINAVLETAAK 35 (340)
T ss_pred EEECCHHHHHHHHHHHHH
T ss_conf 767989999999999999
No 229
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=32.61 E-value=21 Score=15.98 Aligned_cols=17 Identities=24% Similarity=0.431 Sum_probs=8.3
Q ss_pred CCCCCCEEEEECCCCHH
Q ss_conf 68888899996797023
Q gi|254780371|r 359 LPRPGDLLYIEKTGAYG 375 (431)
Q Consensus 359 ~l~~GD~l~i~~~GAY~ 375 (431)
.++.||.+.+.+-+.=+
T Consensus 541 gik~GDvi~v~~~sG~g 557 (652)
T COG2433 541 GIKEGDVILVEDPSGGG 557 (652)
T ss_pred CCCCCCEEEEECCCCCC
T ss_conf 44668389998689852
No 230
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=32.30 E-value=35 Score=14.50 Aligned_cols=83 Identities=16% Similarity=0.159 Sum_probs=41.8
Q ss_pred EEHHHHHHHHHHHHHHCCCC-CCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCEEECCCCCCCHH
Q ss_conf 77999999999999861447-97899964107999999999973992898689998652212578431244477542012
Q gi|254780371|r 32 YSTTAIEKNYLTFSNAFDGM-DTMVCYALKANSNQAVIKTLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGVGKTIDE 110 (431)
Q Consensus 32 ~d~~~i~~n~~~l~~a~~~~-~~~i~yAvKaN~~~~il~~l~~~G~g~dv~S~~El~~al~~G~~~~~Ii~~g~~k~~~~ 110 (431)
++.+.+++.++++++...++ +..++.+.+.-.....++.+.++ +++ -+.+.. ..+.+.
T Consensus 36 ~~~~~l~~~i~~~~~~~~~pfgvnl~~~~~~~~~~~~~~~~~~~------------------~v~--~v~~~~-g~p~~~ 94 (236)
T cd04730 36 LTPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLEVALEE------------------GVP--VVSFSF-GPPAEV 94 (236)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHC------------------CCC--EEEECC-CCCHHH
T ss_conf 99999999999999746997244332467763689999999976------------------999--999879-897899
Q ss_pred HHHHHHCCCCCC-CCCCCHHHHHHHH
Q ss_conf 444420687233-3322024676877
Q gi|254780371|r 111 IDLALQSGIYCF-NVESESELKTLNQ 135 (431)
Q Consensus 111 l~~ai~~gv~~i-~vDs~~el~~l~~ 135 (431)
++.+-+.|+..+ .+-|..+.++..+
T Consensus 95 v~~l~~~g~~v~~~v~s~~~A~~a~~ 120 (236)
T cd04730 95 VERLKAAGIKVIPTVTSVEEARKAEA 120 (236)
T ss_pred HHHHHHCCCEEEEECCCHHHHHHHHH
T ss_conf 99999829989995898999999998
No 231
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=32.26 E-value=35 Score=14.50 Aligned_cols=32 Identities=25% Similarity=0.260 Sum_probs=15.2
Q ss_pred HHHHHHHCC--CCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 244442068--72333322024676877411334
Q gi|254780371|r 110 EIDLALQSG--IYCFNVESESELKTLNQRAVSLG 141 (431)
Q Consensus 110 ~l~~ai~~g--v~~i~vDs~~el~~l~~~a~~~~ 141 (431)
.|+.|.+.+ +..||+.|++.+..+.+.|.+.+
T Consensus 7 mL~~A~~~~YAV~AfNv~NlE~~~Ail~AAee~~ 40 (345)
T cd00946 7 LFDYAKENGFAIPAVNCTSSSTINAVLEAARDAK 40 (345)
T ss_pred HHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHC
T ss_conf 9999998597788874699999999999999978
No 232
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=32.22 E-value=35 Score=14.49 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=20.9
Q ss_pred HHHHHHHHCC--CCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 1244442068--72333322024676877411334421589987
Q gi|254780371|r 109 DEIDLALQSG--IYCFNVESESELKTLNQRAVSLGKKAPIAFRV 150 (431)
Q Consensus 109 ~~l~~ai~~g--v~~i~vDs~~el~~l~~~a~~~~~~~~I~lRi 150 (431)
+.|+.|.+.+ +..||+-|++.++.+.+.|.+.+.+ |.|-+
T Consensus 11 emL~~A~~~~YAV~AfNv~n~e~~~Avl~AAee~~sP--vIiq~ 52 (349)
T PRK09197 11 KMFDRAKENGFALPAVNCVGTDSINAVLEGAAKAKSP--VIIQF 52 (349)
T ss_pred HHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCC--EEEEE
T ss_conf 9999999889779986479899999999999997889--99991
No 233
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=32.18 E-value=29 Score=15.09 Aligned_cols=10 Identities=20% Similarity=-0.137 Sum_probs=4.1
Q ss_pred HHHHHHCCCC
Q ss_conf 4444206872
Q gi|254780371|r 111 IDLALQSGIY 120 (431)
Q Consensus 111 l~~ai~~gv~ 120 (431)
.+.+.+.|..
T Consensus 24 ~~~~~~sgtD 33 (229)
T PRK04169 24 DLAICESGTD 33 (229)
T ss_pred HHHHHHCCCC
T ss_conf 9999862999
No 234
>TIGR02050 gshA_cyan_rel uncharacterized enzyme; InterPro: IPR011793 This family represents a division of a larger family, the other branch of which is predicted to act as glutamate--cysteine ligase (the first of two enzymes in glutathione biosynthesis) in the cyanobacteria. Species containing this protein, however, are generally not believed to make glutathione, and the function is unknown..
Probab=32.10 E-value=22 Score=15.95 Aligned_cols=100 Identities=12% Similarity=0.127 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHCCCCCCCCCCCHH----HHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 420124444206872333322024----6768774113344215899872377867443332233444568871111345
Q gi|254780371|r 106 KTIDEIDLALQSGIYCFNVESESE----LKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSL 181 (431)
Q Consensus 106 k~~~~l~~ai~~gv~~i~vDs~~e----l~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~ 181 (431)
..+|.++.-++.- +=+++++.| +....+.+.. .-.++++|+ +..++|+.- .+++==+.. -..-
T Consensus 45 ~~~E~~~~~vE~a--t~v~~~~~eA~~~~~~~r~~l~~--~A~~~G~~~---~~~gtHPf~----~W~~~~~~~--~~rY 111 (297)
T TIGR02050 45 FKKELFESQVELA--TPVCTTLAEALAELREVRARLVE--AASDLGLRI---AAAGTHPFA----RWREQELAE--NPRY 111 (297)
T ss_pred CCHHHHHCEEEEE--CCCCCCHHHHHHHHHHHHHHHHH--HHHHCCCEE---EECCCCCCH----HHHCCCCCC--CHHH
T ss_conf 0422221444465--68447878999999999999999--986648636---513467753----331477786--5558
Q ss_pred HHHHHHCC----CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 77764156----3220023355641564420489999999988
Q gi|254780371|r 182 YAYASTLP----GVKISGVDMHIGSQIDQIESFHKAFKLLRDL 220 (431)
Q Consensus 182 ~~~~~~~~----~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~ 220 (431)
.+.+.++. ---+.|+|.||| +.+.+.-...+..++..
T Consensus 112 ~~~~e~~gy~~~~~Lv~G~HVHVg--v~s~~~~~~vl~rl~~~ 152 (297)
T TIGR02050 112 QRLLERYGYVARQSLVFGLHVHVG--VPSPDDAVAVLNRLLPW 152 (297)
T ss_pred HHHHHHCCEEEHHEEECCEEEEEC--CCCHHHHHHHHHHHHHH
T ss_conf 999986180000013211347703--27643588998656667
No 235
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=31.85 E-value=36 Score=14.45 Aligned_cols=55 Identities=11% Similarity=0.202 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf 2200233556415644204899999999887653102666526880687300026654
Q gi|254780371|r 191 VKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDH 248 (431)
Q Consensus 191 l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~ 248 (431)
|--.-|+|.+.|...+.+.-.+..+.+++.+.. .-.+++.|||||--..||.+-.
T Consensus 468 LyRTEi~FM~as~fP~~EeQ~a~Yr~vL~~~~~---kpVT~RTLDIGgDK~LpY~~i~ 522 (756)
T COG3605 468 LYRTEIQFMLASGFPSEEEQEAQYRGVLQAANG---KPVTFRTLDIGGDKVLPYMPIS 522 (756)
T ss_pred EEEHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC---CCEEEEEECCCCCCCCCCCCCC
T ss_conf 442020888750499568899999999985689---9706986435787666777423
No 236
>pfam03851 UvdE UV-endonuclease UvdE.
Probab=31.66 E-value=36 Score=14.43 Aligned_cols=132 Identities=15% Similarity=0.227 Sum_probs=70.1
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCC-----CCHHHHHHHHHCCCCCHHH
Q ss_conf 33322024676877411334421589987237-78674433322334445688711-----1134577764156322002
Q gi|254780371|r 122 FNVESESELKTLNQRAVSLGKKAPIAFRVNPD-INANTHKKISTGKKEDKFGIPIH-----QIHSLYAYASTLPGVKISG 195 (431)
Q Consensus 122 i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~-~~~~~~~~~~tg~~~sKFGi~~~-----~~~~~~~~~~~~~~l~l~G 195 (431)
+...|+..+.++.+...+.+.. +.|+.-+ +...+|+. +|.... ++.++-+.++++ +++
T Consensus 38 l~l~Nl~~l~~il~~n~~~~I~---~yRiSS~lfP~~shp~---------~~~~~~~~~~~~l~~iG~~a~~~-~~R--- 101 (275)
T pfam03851 38 LGKQNLRNLIRLLHYNIAHGIR---LYRLSSSLFPLASHPD---------VGWKYETFAAPELREAGELAKEH-GHR--- 101 (275)
T ss_pred HHHHHHHHHHHHHHHHHHCCCC---EEEECCCCCCCCCCCC---------CCCHHHHHHHHHHHHHHHHHHHC-CCE---
T ss_conf 9999999999999988875976---6981402046677842---------36204899999999999999982-955---
Q ss_pred HHHHHHHC----CCCCHHHHHHHHHHHHHHHHHHCCCCCC---CEEE--ECCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 33556415----6442048999999998876531026665---2688--0687300026654553114565556542102
Q gi|254780371|r 196 VDMHIGSQ----IDQIESFHKAFKLLRDLTQQLRSNGHNI---QHID--VGGGLGIAYHSDHRPPSSSDYASLIHQYFGN 266 (431)
Q Consensus 196 lH~H~GS~----~~~~~~~~~~~~~~~~~~~~l~~~g~~~---~~ld--iGGGf~i~y~~~~~~~~~~~~~~~i~~~~~~ 266 (431)
|.||.|-. ..+++...+.++.+.--++.+...|..- ..|| +||-+ +++.-.++.|.+.....-..
T Consensus 102 ls~HPgqf~vL~S~~~~Vv~~si~dL~~Ha~~ld~mgl~~~~~~~inIH~gg~y------gdk~~~~~Rf~~n~~~L~~~ 175 (275)
T pfam03851 102 LTFHPGQFTVLNSPRPEVTESAIRDMAYHYRLLDGMGLAERPDAVLIIHVGGAF------GGKEATLERFHENIARLPDS 175 (275)
T ss_pred EEECCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC------CCHHHHHHHHHHHHHHCCHH
T ss_conf 874899722169998899999999986699999980899766734787326766------98889999999999767994
Q ss_pred CCCEEEEEE
Q ss_conf 453034410
Q gi|254780371|r 267 LQCKIILEP 275 (431)
Q Consensus 267 ~~~~l~~EP 275 (431)
..-+|.+|-
T Consensus 176 vk~rLvlEN 184 (275)
T pfam03851 176 VKLRLVLEN 184 (275)
T ss_pred HCCEEEEEC
T ss_conf 712679955
No 237
>cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the N-terminal barrel, and a few single-barrel sequences most similar to the N-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains fro
Probab=31.57 E-value=25 Score=15.46 Aligned_cols=68 Identities=19% Similarity=0.352 Sum_probs=35.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCC----HHHH-HHHHHHCCCC-----CHHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 44456887111134577764156322----0023-3556415644-----20489999999988765310266652688
Q gi|254780371|r 167 KEDKFGIPIHQIHSLYAYASTLPGVK----ISGV-DMHIGSQIDQ-----IESFHKAFKLLRDLTQQLRSNGHNIQHID 235 (431)
Q Consensus 167 ~~sKFGi~~~~~~~~~~~~~~~~~l~----l~Gl-H~H~GS~~~~-----~~~~~~~~~~~~~~~~~l~~~g~~~~~ld 235 (431)
.+++|-+..+.+.+-.+.+++. |++ +.|- .|-.-|...+ .+...+.+....++.+++.+.|...=.||
T Consensus 125 ~~~~f~l~~~~~l~e~~eAk~~-g~~~kPvLvGPvTfL~LsK~~~~~~~~~~~l~~Ll~~Y~~lL~~L~~~G~~wVQiD 202 (360)
T cd03312 125 PDTEFKLASNKLLDEYLEAKAL-GINTKPVLLGPVTFLKLSKAKGGGFDRLSLLDKLLPVYKELLKKLAAAGAEWVQID 202 (360)
T ss_pred CCCCEECCCCHHHHHHHHHHHC-CCCCCCEEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 9984303540789999999986-99887579744899887422478879899999999999999999997699779714
No 238
>TIGR00580 mfd transcription-repair coupling factor; InterPro: IPR004576 All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transcribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. A lesion in the template strand blocks the RNA polymerase complex (RNAP). The RNAP-DNA-RNA complex is specifically recognised by TcrF, which releases RNAP and the truncated transcript. The TcrF may replace RNAP at the lesion site and then recruit the UvrA/B/C repair system.; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0006281 DNA repair.
Probab=31.56 E-value=36 Score=14.42 Aligned_cols=11 Identities=45% Similarity=0.954 Sum_probs=4.5
Q ss_pred EECCCCCCCCC
Q ss_conf 80687300026
Q gi|254780371|r 235 DVGGGLGIAYH 245 (431)
Q Consensus 235 diGGGf~i~y~ 245 (431)
++|+||.|.++
T Consensus 850 eLGaGf~iA~h 860 (997)
T TIGR00580 850 ELGAGFKIALH 860 (997)
T ss_pred CCCCHHHHHHH
T ss_conf 13521678863
No 239
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=31.56 E-value=36 Score=14.42 Aligned_cols=50 Identities=22% Similarity=0.319 Sum_probs=36.8
Q ss_pred CEEEEECCCCHHHHHHCCCCCCCC--------CEEEEEECCE---------EEEEEECCCHHHHHHC
Q ss_conf 899996797023334027788986--------6599998896---------8999824898899730
Q gi|254780371|r 364 DLLYIEKTGAYGAVQSGTYNSRLL--------IPEIMVNGSQ---------FHIIRPRMTFQELIEL 413 (431)
Q Consensus 364 D~l~i~~~GAY~~s~~s~fn~~p~--------p~~v~v~~g~---------~~~ir~ret~ed~~~~ 413 (431)
--++...=|||+.+|.+.|+.... -|.+-|++|. .+...|+-||.|++..
T Consensus 448 ~p~lLygYGaYG~s~~p~Fs~~~lSLlDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DFIa~ 514 (682)
T COG1770 448 APLLLYGYGAYGISMDPSFSIARLSLLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAA 514 (682)
T ss_pred CCEEEEEECCCCCCCCCCCCCCEEEEECCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 8579999534565578664412422001726999999506643475788734455333647889999
No 240
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family; InterPro: IPR005966 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). PLP is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination , , . PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors . Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy . PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalyzed reactions, enzymatic and non-enzymatic . This entry represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as) 1-aminocyclopropane-1-carboxylate deaminase. However, the members of this family are less well conserved.; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding.
Probab=31.03 E-value=37 Score=14.36 Aligned_cols=113 Identities=23% Similarity=0.293 Sum_probs=56.9
Q ss_pred EEECCCCCCCH--H-HHHHHHCCCCC-CCCCCCH--HHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 24447754201--2-44442068723-3332202--46768774113344215899872377867443332233444568
Q gi|254780371|r 99 IVFSGVGKTID--E-IDLALQSGIYC-FNVESES--ELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFG 172 (431)
Q Consensus 99 Ii~~g~~k~~~--~-l~~ai~~gv~~-i~vDs~~--el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFG 172 (431)
+...|+ |-+. . +..|++.|+.+ |++-.+. +.+.-...+++++..+-..||= |. |
T Consensus 34 l~~sGN-KiRKLEyLl~dAl~~GAdtviT~GaiqSNH~r~TA~~a~~lGL~~~l~Lr~-~~------------------~ 93 (339)
T TIGR01275 34 LALSGN-KIRKLEYLLADALKKGADTVITVGAIQSNHARATALVAKKLGLDAVLLLRK-SK------------------G 93 (339)
T ss_pred CCCCCC-HHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEC-CC------------------C
T ss_conf 666664-088999999999862893999827621015899999999749976999636-64------------------0
Q ss_pred CCCCCCHHH-HHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHH--HHHHHHHHHHHHCCCCCCCEEEECCCC
Q ss_conf 871111345-77764156322002335564156442048999--999998876531026665268806873
Q gi|254780371|r 173 IPIHQIHSL-YAYASTLPGVKISGVDMHIGSQIDQIESFHKA--FKLLRDLTQQLRSNGHNIQHIDVGGGL 240 (431)
Q Consensus 173 i~~~~~~~~-~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~--~~~~~~~~~~l~~~g~~~~~ldiGGGf 240 (431)
+.-|+ ..+ =..+- .++.|...|+ .+.+.+.+. -+.+-++.++++..|.++=+|=.||-=
T Consensus 94 ~~~E~-~~l~GN~Ll----~~L~g~~~~~----~~~~~~~~~Gs~~~~~~~~~~~e~~G~kpYVIP~GGSn 155 (339)
T TIGR01275 94 VLDED-EELKGNLLL----DKLLGAEVRV----VSAEEYEEIGSEALLEELKEKLEKEGKKPYVIPVGGSN 155 (339)
T ss_pred CCCCC-CCCCHHHHH----HHHHCCCEEE----ECHHHHCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCC
T ss_conf 00124-423303688----9871861799----84356027364889999999998379963251788865
No 241
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=30.88 E-value=26 Score=15.41 Aligned_cols=162 Identities=20% Similarity=0.335 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHCCC----CCCEEEEE----EECCCCHHHHHHHH-HCCCCEEEECHH------HHHHHHHCCCCCCC
Q ss_conf 99999999999986144----79789996----41079999999999-739928986899------98652212578431
Q gi|254780371|r 34 TTAIEKNYLTFSNAFDG----MDTMVCYA----LKANSNQAVIKTLA-HLGSGLDIVSEG------ELRRALAAPVPAER 98 (431)
Q Consensus 34 ~~~i~~n~~~l~~a~~~----~~~~i~yA----vKaN~~~~il~~l~-~~G~g~dv~S~~------El~~al~~G~~~~~ 98 (431)
-..+++|++-+-+|-.. .+.-++|- =|| .+..+++ +.|..+-+.|.. .+...|. +..+.+
T Consensus 9 Q~~vk~~L~l~I~AAk~R~e~LDH~LL~GPPGLGKT----TLA~IiA~Emg~~l~iTsGP~L~kPgDlaaiLt-~L~~gD 83 (305)
T TIGR00635 9 QEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKT----TLAHIIANEMGVNLKITSGPALEKPGDLAAILT-NLEEGD 83 (305)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHH----HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHH-HCCCCC
T ss_conf 288999999999999824897341663175687467----899999998389326740675547578999997-056896
Q ss_pred EEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCC----------------CCCEE-EEEEEEC--CCCCCCC
Q ss_conf 244477542012444420687233332202467687741133----------------44215-8998723--7786744
Q gi|254780371|r 99 IVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSL----------------GKKAP-IAFRVNP--DINANTH 159 (431)
Q Consensus 99 Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~----------------~~~~~-I~lRinp--~~~~~~~ 159 (431)
|.| +||+-+|...+.+. |+.++ |-+-++| =+|+-|.
T Consensus 84 VLF-------------------------IDEIHRL~p~~EE~LYpAMEDF~lDi~IG~Gp~Ar~v~ldLpPFTLvGATTR 138 (305)
T TIGR00635 84 VLF-------------------------IDEIHRLSPAIEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTR 138 (305)
T ss_pred EEE-------------------------CCHHHHCCHHHHHHCCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCCCC
T ss_conf 310-------------------------1256504833453105300121787787128985257606869442000034
Q ss_pred CCCCCCCCCCCCCCCC-------CCCHHHHHHHHHCCCCCHHHHHH-HHH--HCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 3332233444568871-------11134577764156322002335-564--1564420489999999988765310
Q gi|254780371|r 160 KKISTGKKEDKFGIPI-------HQIHSLYAYASTLPGVKISGVDM-HIG--SQIDQIESFHKAFKLLRDLTQQLRS 226 (431)
Q Consensus 160 ~~~~tg~~~sKFGi~~-------~~~~~~~~~~~~~~~l~l~GlH~-H~G--S~~~~~~~~~~~~~~~~~~~~~l~~ 226 (431)
...-|++..+||||.. +|+.+++++....=++++.-=-. -+. |. -.|..=.+.++.++++++-..+
T Consensus 139 ~G~lt~PLrdRFG~~~rl~fY~~~EL~~Iv~R~A~~L~~ei~~~~a~~IArrSR-GTPRIAnRLLRRVRDfA~V~~~ 214 (305)
T TIGR00635 139 AGMLTSPLRDRFGIILRLEFYTPEELAEIVSRSAGLLNIEIEQEAALEIARRSR-GTPRIANRLLRRVRDFAQVRGQ 214 (305)
T ss_pred CCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHCC
T ss_conf 774103133454474540268987899998753344143007789999987547-8637888776766448887267
No 242
>PRK09354 recA recombinase A; Provisional
Probab=30.62 E-value=37 Score=14.32 Aligned_cols=75 Identities=31% Similarity=0.369 Sum_probs=35.1
Q ss_pred CEEEECHHHHHH--HHH-CCCCCCCEE-ECCC---CCCCHH---HHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEE
Q ss_conf 289868999865--221-257843124-4477---542012---444420687233332202467687741133442158
Q gi|254780371|r 77 GLDIVSEGELRR--ALA-APVPAERIV-FSGV---GKTIDE---IDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPI 146 (431)
Q Consensus 77 g~dv~S~~El~~--al~-~G~~~~~Ii-~~g~---~k~~~~---l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I 146 (431)
.+++.|.+=+.+ |+- -|+|..||+ +.|| +|+.=- +..+-+.|-...-+|.++-++. +.++.+|...+=
T Consensus 37 ~v~~isTGsl~LD~aLGiGG~P~GRivEi~G~esSGKTtlal~~iaeaQk~Gg~~a~iDaE~ald~--~~a~~lGVd~d~ 114 (350)
T PRK09354 37 DVETISTGSLALDIALGIGGLPKGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDP--VYAKKLGVDIDN 114 (350)
T ss_pred CCCEECCCCHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCH--HHHHHCCCCHHH
T ss_conf 766544771789998758996787089998898777999999999999975994799960002798--899984977157
Q ss_pred EEEEECC
Q ss_conf 9987237
Q gi|254780371|r 147 AFRVNPD 153 (431)
Q Consensus 147 ~lRinp~ 153 (431)
++-..|+
T Consensus 115 llv~qpd 121 (350)
T PRK09354 115 LLVSQPD 121 (350)
T ss_pred EEEECCC
T ss_conf 1785686
No 243
>PRK07524 hypothetical protein; Provisional
Probab=30.52 E-value=38 Score=14.31 Aligned_cols=39 Identities=13% Similarity=0.126 Sum_probs=18.5
Q ss_pred EEEEECCCCHHHHHHC--CCCCCCCCEEEEE-ECCEEEEEEE
Q ss_conf 9999679702333402--7788986659999-8896899982
Q gi|254780371|r 365 LLYIEKTGAYGAVQSG--TYNSRLLIPEIMV-NGSQFHIIRP 403 (431)
Q Consensus 365 ~l~i~~~GAY~~s~~s--~fn~~p~p~~v~v-~~g~~~~ir~ 403 (431)
.++|..=|++.+++.. ..-.+..|..++| +|+....|++
T Consensus 428 vi~i~GDGsf~m~~~eL~Ta~r~~lpi~iiV~NN~gyg~i~~ 469 (534)
T PRK07524 428 VVCLVGDGGLQFTLPELASAVEADLPLVVLLWNNQGYGEIRR 469 (534)
T ss_pred EEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH
T ss_conf 899987268754199999999978591899997983259999
No 244
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=30.38 E-value=38 Score=14.29 Aligned_cols=11 Identities=9% Similarity=-0.278 Sum_probs=4.0
Q ss_pred CCCCEEECCCC
Q ss_conf 97422005530
Q gi|254780371|r 298 DKTFVILDVAM 308 (431)
Q Consensus 298 ~~~~~~vD~g~ 308 (431)
|...+.|..|+
T Consensus 180 G~~~I~v~~Gy 190 (221)
T PRK13226 180 AMPSVAALWGY 190 (221)
T ss_pred CCCEEEECCCC
T ss_conf 99999977899
No 245
>pfam08267 Meth_synt_1 Cobalamin-independent synthase, N-terminal domain. The N-terminal domain and C-terminal domains of cobalamin-independent synthases together define a catalytic cleft in the enzyme. The N-terminal domain is thought to bind the substrate, in particular, the negatively charged polyglutamate chain. The N-terminal domain is also thought to stabilize a loop from the C-terminal domain.
Probab=30.28 E-value=38 Score=14.28 Aligned_cols=67 Identities=19% Similarity=0.345 Sum_probs=27.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCC----CHHH-HHHHHHHCCC---C-CHHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 445688711113457776415632----2002-3355641564---4-20489999999988765310266652688
Q gi|254780371|r 168 EDKFGIPIHQIHSLYAYASTLPGV----KISG-VDMHIGSQID---Q-IESFHKAFKLLRDLTQQLRSNGHNIQHID 235 (431)
Q Consensus 168 ~sKFGi~~~~~~~~~~~~~~~~~l----~l~G-lH~H~GS~~~---~-~~~~~~~~~~~~~~~~~l~~~g~~~~~ld 235 (431)
+++|=...+.+.+-.+.+++. |+ .+.| +.|-.-|... + .+...+.+....++.+++.+.|...=.||
T Consensus 126 ~~~f~l~~~~~~~e~~eA~~l-G~~~kPVLvGPvTfL~Lsk~~~~~~~~~ll~~ll~~Y~~ll~~L~~~G~~wVQiD 201 (310)
T pfam08267 126 DTEFKLNDEKLLEEYLEAKAL-GIKAKPVLLGPLTFLWLSKNKGGKDRLELLEALLPVYKELLKELAAAGAEWVQID 201 (310)
T ss_pred CCCEEECCCHHHHHHHHHHHC-CCCCCCEEECCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 874442653239999999974-9988866855189998750257899999999999999999999987799879832
No 246
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=29.66 E-value=39 Score=14.21 Aligned_cols=45 Identities=13% Similarity=0.283 Sum_probs=29.0
Q ss_pred EEECCCCCCCHHHHHHHHCCCCCCCCCCC--HHHHHHHHHHCCCCCC
Q ss_conf 24447754201244442068723333220--2467687741133442
Q gi|254780371|r 99 IVFSGVGKTIDEIDLALQSGIYCFNVESE--SELKTLNQRAVSLGKK 143 (431)
Q Consensus 99 Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~--~el~~l~~~a~~~~~~ 143 (431)
|.+.|-.++.++++.+++.|+.-+.+.|. ..-+.+.++++..+.+
T Consensus 77 i~vGGGIrs~e~~~~ll~~GadkVvigs~a~~~p~~i~~~~~~~G~q 123 (253)
T PRK02083 77 LTVGGGIRSVEDARRLLRAGADKVSINSAAVADPELITELADRFGSQ 123 (253)
T ss_pred EEEECCCCCHHHHHHHHHCCCCEEEECCHHHHCCCHHHHHHHHCCCE
T ss_conf 78517621389876898779878999984653853557889746983
No 247
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=29.49 E-value=39 Score=14.19 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=15.3
Q ss_pred CCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEE
Q ss_conf 88888999967970233340277889866599998
Q gi|254780371|r 360 PRPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMVN 394 (431)
Q Consensus 360 l~~GD~l~i~~~GAY~~s~~s~fn~~p~p~~v~v~ 394 (431)
+..-=++++...|.- .-.-|.| ||+.|.+.+.
T Consensus 374 ~~a~aIv~~T~sG~t-A~~is~~--RP~~pI~a~t 405 (480)
T cd00288 374 LGAKAIVVLTTSGRT-ARLVSKY--RPNAPIIAVT 405 (480)
T ss_pred CCCCEEEEECCCCHH-HHHHHHH--CCCCCEEEEC
T ss_conf 699899998798589-9999965--9799999985
No 248
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=29.39 E-value=39 Score=14.18 Aligned_cols=40 Identities=15% Similarity=0.096 Sum_probs=20.9
Q ss_pred CEEEEECCCCHHHHHHC--CCCCCCCCEEEEE-ECCEEEEEEE
Q ss_conf 89999679702333402--7788986659999-8896899982
Q gi|254780371|r 364 DLLYIEKTGAYGAVQSG--TYNSRLLIPEIMV-NGSQFHIIRP 403 (431)
Q Consensus 364 D~l~i~~~GAY~~s~~s--~fn~~p~p~~v~v-~~g~~~~ir~ 403 (431)
..++|..=|++.|+..- .--.+..|..++| +|+..-.||.
T Consensus 449 ~Vv~i~GDGsf~m~~~EL~Tavr~~lpv~ivV~NN~~~g~i~~ 491 (594)
T PRK09107 449 LVIDIAGDASIQMNMQEMSTAVQYNLPIKIFILNNQYMGMVRQ 491 (594)
T ss_pred CEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH
T ss_conf 4899988718765599999999968892899997986508999
No 249
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=29.33 E-value=39 Score=14.17 Aligned_cols=81 Identities=15% Similarity=0.335 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCC-
Q ss_conf 7999999999973992898689998652212578431244477542012444420687233332202467687741133-
Q gi|254780371|r 62 NSNQAVIKTLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSL- 140 (431)
Q Consensus 62 N~~~~il~~l~~~G~g~dv~S~~El~~al~~G~~~~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~- 140 (431)
+....+++.+.+.-..+|++--.|+ +++.....|+++.+- |-| ++++ --+.|. |-..+.++|....+++
T Consensus 52 d~Dv~~lr~~~~~~~NlE~a~teEm-l~ia~~~kP~~vtLV-Pe~-r~ev--TTegGl-----D~~~~~~~l~~~v~~L~ 121 (243)
T COG0854 52 DRDVRILRALIDTRFNLEMAPTEEM-LAIALKTKPHQVTLV-PEK-REEV--TTEGGL-----DVAGQLDKLRDAVRRLK 121 (243)
T ss_pred HHHHHHHHHHCCCCEECCCCCHHHH-HHHHHHCCCCEEEEC-CCC-HHHC--CCCCCH-----HHHHHHHHHHHHHHHHH
T ss_conf 4458999997135440043744899-999985598747857-896-4641--455563-----35500246999999998
Q ss_pred CCCEEEEEEEEC
Q ss_conf 442158998723
Q gi|254780371|r 141 GKKAPIAFRVNP 152 (431)
Q Consensus 141 ~~~~~I~lRinp 152 (431)
+..++|.|=++|
T Consensus 122 ~~GirVSLFiD~ 133 (243)
T COG0854 122 NAGIRVSLFIDP 133 (243)
T ss_pred HCCCEEEEEECC
T ss_conf 579769997279
No 250
>PRK13238 tnaA tryptophanase; Provisional
Probab=29.27 E-value=39 Score=14.17 Aligned_cols=68 Identities=13% Similarity=0.257 Sum_probs=30.2
Q ss_pred CCCCCCHHHHHHHHHCCCCCHHHHH-------HHHH---HCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCC
Q ss_conf 8711113457776415632200233-------5564---15644204899999999887653102666526880687300
Q gi|254780371|r 173 IPIHQIHSLYAYASTLPGVKISGVD-------MHIG---SQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGI 242 (431)
Q Consensus 173 i~~~~~~~~~~~~~~~~~l~l~GlH-------~H~G---S~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i 242 (431)
++.+.+.++.+.++++ ++.+.-=- .++- .+..+ ....+-++++...++-+--..-+--..|+||=+..
T Consensus 195 VSm~Nir~v~~la~~~-~ip~~lDaaRfaENAyFIk~RE~gY~d-~si~eI~rEmfs~aDg~tmSaKKD~~vniGG~l~~ 272 (461)
T PRK13238 195 VSMANLRAVYEIAKKY-GIPVVLDAARFAENAYFIKQREPGYKD-KSIKEITREMFSYADGLTMSAKKDAMVNIGGLLCF 272 (461)
T ss_pred CCHHHHHHHHHHHHHC-CCCEEEEHHHHHHHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHEEEEEECCCCEECCCCEEEE
T ss_conf 4689999999999982-995998656676645788732531257-99999999998452379998330121044228996
No 251
>PRK13487 chemoreceptor glutamine deamidase CheD; Provisional
Probab=29.13 E-value=40 Score=14.15 Aligned_cols=56 Identities=25% Similarity=0.408 Sum_probs=30.4
Q ss_pred HHHHHHHCC-CC-CEEEEEECCEECCCCCEEEEEEEEECC---CCCCCCEEECCCCCCCCCCH
Q ss_conf 556542102-45-303441011120366325888764034---68974220055300011001
Q gi|254780371|r 258 SLIHQYFGN-LQ-CKIILEPGRFLVADVGILVTKVISIKK---SADKTFVILDVAMNDFMRPT 315 (431)
Q Consensus 258 ~~i~~~~~~-~~-~~l~~EPGR~lva~ag~ll~~V~~vK~---~~~~~~~~vD~g~~~~~~p~ 315 (431)
.+.+.++.. ++ ..+-+=||.|.|.....++++|++-=- -.+. ... =|||||++-|.
T Consensus 9 ~~~~ry~d~~~~~~~vki~pGe~~vt~~~~vI~TvLGSCVavcl~Dp-~~~-IGGMnHfmLP~ 69 (201)
T PRK13487 9 EASNRYFDHHFQTDAVKILPGEYFVTREDTLIVTVLGSCVSACLRDP-VLK-IGGMNHFMLPD 69 (201)
T ss_pred CCCCCEECCCCCCEEEEECCCEEEEECCCEEEEEECCCEEEEEEECC-CCC-CCCEEEEEECC
T ss_conf 55641441546841899869757996698389986142589999856-457-23246798048
No 252
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=28.95 E-value=40 Score=14.13 Aligned_cols=18 Identities=6% Similarity=-0.127 Sum_probs=8.8
Q ss_pred CHHHHHHHHHHHHCCCCC
Q ss_conf 114565556542102453
Q gi|254780371|r 252 SSSDYASLIHQYFGNLQC 269 (431)
Q Consensus 252 ~~~~~~~~i~~~~~~~~~ 269 (431)
+.+++.+++.+.++..+|
T Consensus 130 ~~~el~~al~~~l~~~GP 147 (157)
T cd02001 130 LLGGLGSEFAGLLATTGP 147 (157)
T ss_pred CHHHHHHHHHHHHCCCCC
T ss_conf 999999999999849999
No 253
>TIGR02763 chlamy_scaf scaffolding protein; InterPro: IPR014131 Members of this entry are encoded by genes in chlamydiaphage such as Chp2. These viruses have around eight genes and infect obligately intracellular bacterial pathogens of the genus Chlamydia. This protein is annotated as VP3 or structural protein (as if a protein of mature viral particles), however, it is displaced from procapsids as DNA is packaged, and therefore is more correctly described as a scaffolding protein..
Probab=28.91 E-value=19 Score=16.36 Aligned_cols=51 Identities=20% Similarity=0.112 Sum_probs=38.5
Q ss_pred EEECCCCHHHHHHHH---HC-CCCEEEECHHHHHHHHHCCCCCCCEEECCCCCCC
Q ss_conf 641079999999999---73-9928986899986522125784312444775420
Q gi|254780371|r 58 ALKANSNQAVIKTLA---HL-GSGLDIVSEGELRRALAAPVPAERIVFSGVGKTI 108 (431)
Q Consensus 58 AvKaN~~~~il~~l~---~~-G~g~dv~S~~El~~al~~G~~~~~Ii~~g~~k~~ 108 (431)
+.|+|.++++|+.+. .. -+..+|.|+-|+.-||.+=+.+....++=|.|-+
T Consensus 5 vak~Nqa~svL~~~eGdP~Rsp~y~~C~~P~dy~eALn~vie~~E~FdsLPAkvR 59 (127)
T TIGR02763 5 VAKVNQAVSVLRRLEGDPRRSPEYVECPDPLDYSEALNVVIEAEEAFDSLPAKVR 59 (127)
T ss_pred HHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 8773234103666348987586214688821357777675332100012763211
No 254
>pfam01890 CbiG_C Cobalamin synthesis G C-terminus. Members of this family are involved in cobalamin synthesis. A member from Synechocystis sp. PCC 6803 has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. This family is the C-terminal region, and the mid- and N-termival parts are conserved independently in other families.
Probab=28.91 E-value=40 Score=14.13 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=17.6
Q ss_pred CCHHHHHHHHHCCCCEEEECHHHHHH
Q ss_conf 99999999997399289868999865
Q gi|254780371|r 63 SNQAVIKTLAHLGSGLDIVSEGELRR 88 (431)
Q Consensus 63 ~~~~il~~l~~~G~g~dv~S~~El~~ 88 (431)
..+.++++....|+-+...|..||..
T Consensus 46 ~E~gl~~~a~~l~~pl~~~~~e~L~~ 71 (121)
T pfam01890 46 DEPGLLELAARLGVPLRFFSAEELAA 71 (121)
T ss_pred CCHHHHHHHHHHCCCEEEECHHHHHH
T ss_conf 98899999999299869978999962
No 255
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=28.82 E-value=40 Score=14.12 Aligned_cols=14 Identities=21% Similarity=0.326 Sum_probs=7.4
Q ss_pred CCCCCCCEEEECCC
Q ss_conf 02666526880687
Q gi|254780371|r 226 SNGHNIQHIDVGGG 239 (431)
Q Consensus 226 ~~g~~~~~ldiGGG 239 (431)
+.|++--.+|+|=.
T Consensus 153 ~~Gidg~w~D~~Ep 166 (303)
T cd06592 153 KYGIDSFKFDAGEA 166 (303)
T ss_pred HCCCCEEEECCCCC
T ss_conf 45975587038988
No 256
>pfam01408 GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold. This family of enzymes utilize NADP or NAD. This family is called the GFO/IDH/MOCA family in swiss-prot.
Probab=28.80 E-value=40 Score=14.11 Aligned_cols=97 Identities=18% Similarity=0.156 Sum_probs=48.4
Q ss_pred HHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHH-CCCCEEEECHHHHHHHHHCCCCCCCEEECCCC-CCCHHHHHHHHCC
Q ss_conf 999998614479789996410799999999997-39928986899986522125784312444775-4201244442068
Q gi|254780371|r 41 YLTFSNAFDGMDTMVCYALKANSNQAVIKTLAH-LGSGLDIVSEGELRRALAAPVPAERIVFSGVG-KTIDEIDLALQSG 118 (431)
Q Consensus 41 ~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~-~G~g~dv~S~~El~~al~~G~~~~~Ii~~g~~-k~~~~l~~ai~~g 118 (431)
++.+++..+ +.++..-+ .+++.-.+.+.+ .++.. ..|..|+..- ..+ +-++.+.|. .-.+....+++.|
T Consensus 16 ~~~~~~~~~--~~~i~ai~--d~~~~~~~~~~~~~~~~~-~~~~~~~l~~--~~i--D~v~I~tp~~~H~~~~~~~l~~g 86 (120)
T pfam01408 16 LRALNESQD--GAELVGVL--DPDPARAEAVAESFGVPA-YSDLEELLAD--PDV--DAVSVATPPGLHFELALAALEAG 86 (120)
T ss_pred HHHHHHCCC--CCEEEEEE--CCCHHHHHHHHHHHCCCE-ECCHHHHHHC--CCC--CEEEECCCHHHHHHHHHHHHHHC
T ss_conf 999985599--97899998--299999999999839967-8869999737--788--98999087461899999999819
Q ss_pred CCCCCC-----CCCHHHHHHHHHHCCCCCCEEEE
Q ss_conf 723333-----22024676877411334421589
Q gi|254780371|r 119 IYCFNV-----ESESELKTLNQRAVSLGKKAPIA 147 (431)
Q Consensus 119 v~~i~v-----Ds~~el~~l~~~a~~~~~~~~I~ 147 (431)
.. +-+ .|++|++++.+.+++.+...-|+
T Consensus 87 ~~-v~~EKP~~~~~~e~~~l~~~a~~~~~~~~vg 119 (120)
T pfam01408 87 KH-VLVEKPLATTVEEAKELVELAEKKGVRLSVG 119 (120)
T ss_pred CE-EEEECCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 98-9996898199999999999999829969995
No 257
>PRK13516 carboxylate-amine ligase; Provisional
Probab=28.77 E-value=40 Score=14.11 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 2200233556415644204899999999887
Q gi|254780371|r 191 VKISGVDMHIGSQIDQIESFHKAFKLLRDLT 221 (431)
Q Consensus 191 l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~ 221 (431)
.-++|.|.|+| +.|.+.-...+..+....
T Consensus 130 ~~i~G~HVHVg--v~d~e~av~v~n~lr~~L 158 (372)
T PRK13516 130 FTVFGQHVHIG--CPSGDDAIYLLHGLSRYV 158 (372)
T ss_pred HHHHCEEEEEC--CCCHHHHHHHHHHHHHHH
T ss_conf 84610268845--797888999999988887
No 258
>PRK04194 hypothetical protein; Provisional
Probab=28.67 E-value=40 Score=14.10 Aligned_cols=47 Identities=17% Similarity=0.267 Sum_probs=22.0
Q ss_pred CCCCHHHHHHH-HHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCC
Q ss_conf 63220023355-64156442048999999998876531026665268806873
Q gi|254780371|r 189 PGVKISGVDMH-IGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGL 240 (431)
Q Consensus 189 ~~l~l~GlH~H-~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf 240 (431)
.|..+.-+||| +|+ .+...+.+-.+. ..+.+.-..+...-+.+|+||
T Consensus 110 HG~~~e~VHFHEVGa----~DsIvDIvG~~~-~l~~L~~~~i~~spv~~G~G~ 157 (390)
T PRK04194 110 HGIPPEKVHFHEVGA----IDAIVDIVGACA-ALDYLGVDKVYCSPPPLGSGF 157 (390)
T ss_pred CCCCHHHCEEEHHCH----HHHHHHHHHHHH-HHHHCCCCEEEECCCCCCCEE
T ss_conf 399867730211111----788999999999-999839987999288668768
No 259
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.43 E-value=41 Score=14.07 Aligned_cols=14 Identities=29% Similarity=0.477 Sum_probs=8.3
Q ss_pred EEECCCCCCCCCCC
Q ss_conf 88068730002665
Q gi|254780371|r 234 IDVGGGLGIAYHSD 247 (431)
Q Consensus 234 ldiGGGf~i~y~~~ 247 (431)
+-.|||.+-.+.-.
T Consensus 142 V~~GGg~~HR~~Ls 155 (279)
T PRK08385 142 IMIGGGEPHRFSLS 155 (279)
T ss_pred HHHCCCCCCCCCCC
T ss_conf 98738635568876
No 260
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=28.42 E-value=41 Score=14.07 Aligned_cols=16 Identities=6% Similarity=0.239 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHC
Q ss_conf 9999999988765310
Q gi|254780371|r 211 HKAFKLLRDLTQQLRS 226 (431)
Q Consensus 211 ~~~~~~~~~~~~~l~~ 226 (431)
..-++.+.++.+.+++
T Consensus 199 eNR~Rf~~Eii~aIR~ 214 (338)
T cd02933 199 ENRARFLLEVVDAVAE 214 (338)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9998999999999999
No 261
>PRK10060 RNase II stability modulator; Provisional
Probab=28.21 E-value=41 Score=14.05 Aligned_cols=14 Identities=14% Similarity=0.252 Sum_probs=10.4
Q ss_pred CCCCEEEEECCCCH
Q ss_conf 88889999679702
Q gi|254780371|r 361 RPGDLLYIEKTGAY 374 (431)
Q Consensus 361 ~~GD~l~i~~~GAY 374 (431)
+.|=.+++.|-|.=
T Consensus 552 ~lGv~iALDDFGTG 565 (663)
T PRK10060 552 QLGAQVHLDDFGTG 565 (663)
T ss_pred HCCCEEEEECCCCC
T ss_conf 78998999899997
No 262
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=28.11 E-value=41 Score=14.03 Aligned_cols=80 Identities=13% Similarity=0.038 Sum_probs=41.0
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCEEECCC
Q ss_conf 49978997799999999999986144797899964107999999999973992898689998652212578431244477
Q gi|254780371|r 25 VQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGV 104 (431)
Q Consensus 25 ~gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~S~~El~~al~~G~~~~~Ii~~g~ 104 (431)
.||||-. +.=.+.++.+++.|| +..|.-=+|+...-. .|.+++..+|.+--.++...+
T Consensus 34 ~GTpLik---~~G~~aV~~lr~~~P--~~~IvAD~Kt~DaG~-----------------~Ea~~a~~aGAD~vTVlg~A~ 91 (220)
T PRK13305 34 AGTILCL---NEGLGAVKALREQCP--DKIIVADWKVADAGE-----------------TLAQQAFGAGANWMTIICAAP 91 (220)
T ss_pred ECCHHHH---HHHHHHHHHHHHHCC--CCEEEEEEEECCCHH-----------------HHHHHHHHCCCCEEEEECCCC
T ss_conf 0879999---842999999998789--987998754526259-----------------999999865998899956689
Q ss_pred CCCCHH-HHHHHHCCCCCCCCCCC
Q ss_conf 542012-44442068723333220
Q gi|254780371|r 105 GKTIDE-IDLALQSGIYCFNVESE 127 (431)
Q Consensus 105 ~k~~~~-l~~ai~~gv~~i~vDs~ 127 (431)
..+-+. ++.|-++|.. +.+|-+
T Consensus 92 ~~TI~~~~~~a~~~g~~-v~vDli 114 (220)
T PRK13305 92 LATVEKGHAVAQSCGGE-IQIELF 114 (220)
T ss_pred HHHHHHHHHHHHHCCCE-EEEEEC
T ss_conf 79999999999980998-999845
No 263
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=27.37 E-value=35 Score=14.51 Aligned_cols=26 Identities=8% Similarity=0.052 Sum_probs=12.2
Q ss_pred HHHHHHHHHCCCCCCCEEECCCCCCCHH
Q ss_conf 9998652212578431244477542012
Q gi|254780371|r 83 EGELRRALAAPVPAERIVFSGVGKTIDE 110 (431)
Q Consensus 83 ~~El~~al~~G~~~~~Ii~~g~~k~~~~ 110 (431)
..-++.++.+|+ ++|.--||+-..++
T Consensus 58 el~~k~ll~~g~--~~if~i~~~FR~e~ 83 (269)
T cd00669 58 QLFKKRLMVGGL--DRVFEINRNFRNED 83 (269)
T ss_pred HHHHHHHHHCCC--CCEEEEECCCCCCC
T ss_conf 999999986588--86799846210789
No 264
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=27.19 E-value=43 Score=13.93 Aligned_cols=28 Identities=21% Similarity=0.439 Sum_probs=12.3
Q ss_pred CCCCCHHHHHHHHHH---CCCCCCEEEEEEE
Q ss_conf 332202467687741---1334421589987
Q gi|254780371|r 123 NVESESELKTLNQRA---VSLGKKAPIAFRV 150 (431)
Q Consensus 123 ~vDs~~el~~l~~~a---~~~~~~~~I~lRi 150 (431)
.+.+.+++..+.+.| ...+++.+|.|-|
T Consensus 131 ~v~~~~~i~~~l~~A~~~A~~~r~GPV~l~i 161 (574)
T PRK06466 131 MVKHASEIPEVIKKAFYIAQSGRPGPVVVDI 161 (574)
T ss_pred EECCHHHHHHHHHHHHHHHHHCCCCCEEECC
T ss_conf 4089999999999999998767996269534
No 265
>TIGR00406 prmA ribosomal protein L11 methyltransferase; InterPro: IPR004498 Ribosomal protein L11 methyltransferase (2.1.1 from EC) is required for the methylation of ribosomal protein L11. It forms a bifunctional operon in Escherichia coli with panF (pantothenate transport).; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation.
Probab=27.14 E-value=22 Score=15.88 Aligned_cols=45 Identities=20% Similarity=0.456 Sum_probs=24.0
Q ss_pred HHHHHHHHCCCC---CEEEEEECCEECCCCCEEEEEEEEECCCCCCC-CEE
Q ss_conf 555654210245---30344101112036632588876403468974-220
Q gi|254780371|r 257 ASLIHQYFGNLQ---CKIILEPGRFLVADVGILVTKVISIKKSADKT-FVI 303 (431)
Q Consensus 257 ~~~i~~~~~~~~---~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~-~~~ 303 (431)
|+.+++.+.++- .+|+-+-|.++. +|++.++-..|++..... |.+
T Consensus 272 ANiLA~vi~~L~p~~~~L~~~~G~lil--SGIl~~~~~sV~~ay~q~GF~~ 320 (330)
T TIGR00406 272 ANILAEVIKELYPQFSRLVKPGGHLIL--SGILETQAQSVCEAYEQAGFTV 320 (330)
T ss_pred ECCHHHHHHHHHHHHHHHCCCCCCEEE--HHHHHHHHHHHHHHHHCCCCEE
T ss_conf 800245787641355131068996574--1347647999999985579463
No 266
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=26.95 E-value=20 Score=16.22 Aligned_cols=83 Identities=14% Similarity=0.265 Sum_probs=58.1
Q ss_pred EEEEECC-CCCEEEEEE-E---CCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEE----ECCEEEEEEECCCHHHH
Q ss_conf 9810005-666656210-0---5668888899996797023334027788986659999----88968999824898899
Q gi|254780371|r 340 IVGPICE-TGDFIALNR-K---IALPRPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMV----NGSQFHIIRPRMTFQEL 410 (431)
Q Consensus 340 i~G~~C~-~~D~l~~~~-~---lp~l~~GD~l~i~~~GAY~~s~~s~fn~~p~p~~v~v----~~g~~~~ir~ret~ed~ 410 (431)
+.|.+|. +.|+|++.. . +++.+.-.++.|...|+--+|..-.|.+...-..++- .+|..|-+..-+.||-+
T Consensus 305 L~G~~~~~~~~yLGry~~qiSvl~eg~~kE~f~~l~~g~nK~svtrt~L~~ffK~k~f~~tT~~nG~~Ramvpig~YErV 384 (447)
T COG1726 305 LTGRLAKGEHPYLGRYHLQISVLEEGREKELFGWLRPGANKYSVTRTYLGHFFKRKLFNFTTNMNGGERAMVPIGIYERV 384 (447)
T ss_pred CCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHCCCCCCCCEEHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCEE
T ss_conf 56710168765344110047873188602201120257865514067555441141403533467883543114311011
Q ss_pred HHCCCCCHHHHH
Q ss_conf 730888568862
Q gi|254780371|r 411 IELDSIPAWLQK 422 (431)
Q Consensus 411 ~~~~~~p~~~~~ 422 (431)
|-.|++|..|-+
T Consensus 385 mpldi~~tlLlr 396 (447)
T COG1726 385 MPLDILPTLLLR 396 (447)
T ss_pred CCCCCCHHHHHH
T ss_conf 456763699999
No 267
>pfam03737 Methyltransf_6 Demethylmenaquinone methyltransferase. Members of this family are demethylmenaquinone methyltransferases that convert dimethylmenaquinone (DMK) to menaquinone (MK) in the final step of menaquinone biosynthesis. This region is also found at the C-terminus of the DlpA protein.
Probab=26.92 E-value=31 Score=14.89 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=7.8
Q ss_pred EEEEEEEECCCCCEEE
Q ss_conf 8999810005666656
Q gi|254780371|r 337 HADIVGPICETGDFIA 352 (431)
Q Consensus 337 ~~~i~G~~C~~~D~l~ 352 (431)
+..+.|-+..++|++.
T Consensus 131 pI~~ggv~V~pGD~I~ 146 (154)
T pfam03737 131 PVTCGGVTVRPGDYIY 146 (154)
T ss_pred CEEECCEEECCCCEEE
T ss_conf 1999999988999999
No 268
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=26.92 E-value=43 Score=13.89 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=12.2
Q ss_pred CCHHHHHHHHHHHHCCC-----CCEEEEEECCEE
Q ss_conf 31145655565421024-----530344101112
Q gi|254780371|r 251 PSSSDYASLIHQYFGNL-----QCKIILEPGRFL 279 (431)
Q Consensus 251 ~~~~~~~~~i~~~~~~~-----~~~l~~EPGR~l 279 (431)
.+.+.|.+.+.+.+.-. -+.+.+|||..+
T Consensus 172 Qt~~~~~~~l~~~~~l~p~his~Y~l~~e~~t~~ 205 (376)
T PRK05628 172 ETDDDLRRSLDAALEAGVDHVSAYALIVEDGTAL 205 (376)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHH
T ss_conf 9999999999999732898156655565478677
No 269
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=26.88 E-value=43 Score=13.89 Aligned_cols=19 Identities=5% Similarity=0.022 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHCCCCCEE
Q ss_conf 1456555654210245303
Q gi|254780371|r 253 SSDYASLIHQYFGNLQCKI 271 (431)
Q Consensus 253 ~~~~~~~i~~~~~~~~~~l 271 (431)
.+.+++.|.+.+++.++.+
T Consensus 76 ~~~~a~~la~~i~~~~~dl 94 (181)
T cd01985 76 PEATAKALAALIKKEKPDL 94 (181)
T ss_pred HHHHHHHHHHHHHHCCCCE
T ss_conf 8999999999998609989
No 270
>pfam03060 NPD 2-nitropropane dioxygenase. Members of this family catalyse the denitrification of a number of nitroalkanes using either FAD or FMN as a cofactor.
Probab=26.79 E-value=43 Score=13.88 Aligned_cols=116 Identities=17% Similarity=0.115 Sum_probs=53.5
Q ss_pred CCCCHHHHHHHC------CC-CEEEEEHHHHHHHHHHHHHHCCC-CCCEEEEEEECCCC----------HHHHHHHHHCC
Q ss_conf 784299999974------99-78997799999999999986144-79789996410799----------99999999739
Q gi|254780371|r 14 ENVSLEKLAHVV------QT-PFYCYSTTAIEKNYLTFSNAFDG-MDTMVCYALKANSN----------QAVIKTLAHLG 75 (431)
Q Consensus 14 ~~~~l~~La~~~------gT-P~yV~d~~~i~~n~~~l~~a~~~-~~~~i~yAvKaN~~----------~~il~~l~~~G 75 (431)
.+++-.+|+... |+ +..-.+.+.+++.++++++...+ ....+++.-+.... +...+...+.+
T Consensus 20 ~~vs~~~LaaAVs~AGglG~i~~~~~~~e~l~~~i~~~~~~t~~pfgvnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (330)
T pfam03060 20 GGISTPELAAAVSEAGGLGVLGAGYLTPDRLEKEIRKVKELTDKPFGVNLFLPQPAEGDDFALDPEEHLNAALKLALEYG 99 (330)
T ss_pred CCCCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 76786999999996798886127769999999999999986488763133378854314566667750136788887516
Q ss_pred CCEEEEC-HHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHCCCCCC-CCCCCHHHHHHHH
Q ss_conf 9289868-9998652212578431244477542012444420687233-3322024676877
Q gi|254780371|r 76 SGLDIVS-EGELRRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCF-NVESESELKTLNQ 135 (431)
Q Consensus 76 ~g~dv~S-~~El~~al~~G~~~~~Ii~~g~~k~~~~l~~ai~~gv~~i-~vDs~~el~~l~~ 135 (431)
. .+ ...+..++..+. .-|+++.-..+++.++.+-+.|+.++ .+-|+.+.++..+
T Consensus 100 ~----~~~~~~~~~~~~~~~--~~v~~~~G~p~~~~v~~~~~~G~~v~~~v~s~~~A~~a~~ 155 (330)
T pfam03060 100 V----PDYGDDDDSLKDAKP--KVVSFGFGLPPEDVIERLKESGTKVIPTVSSAKEARKAEA 155 (330)
T ss_pred C----CCHHHHHHHHHHCCC--CEEEECCCCCHHHHHHHHHHCCCEEEEECCCHHHHHHHHH
T ss_conf 9----837999999997499--9999899898279999999879989998189999999998
No 271
>PRK13493 chemoreceptor glutamine deamidase CheD; Provisional
Probab=26.60 E-value=44 Score=13.86 Aligned_cols=45 Identities=24% Similarity=0.228 Sum_probs=26.7
Q ss_pred CEEEEEECCEECCCCCEEEEEEEEECCCC--CCCCEEECCCCCCCCCC
Q ss_conf 30344101112036632588876403468--97422005530001100
Q gi|254780371|r 269 CKIILEPGRFLVADVGILVTKVISIKKSA--DKTFVILDVAMNDFMRP 314 (431)
Q Consensus 269 ~~l~~EPGR~lva~ag~ll~~V~~vK~~~--~~~~~~vD~g~~~~~~p 314 (431)
..+-+=||-|.|..-..++++|++-=-.. -.....+ +||||++-|
T Consensus 29 ~avkilPGE~yvt~~~~~I~TvLGSCVaaCl~Dp~~~I-GGMNHFmLP 75 (214)
T PRK13493 29 HMIKVLPGGVYVSSQEELICTGLGSCVSACIWDPVKRV-GGMNHFLLP 75 (214)
T ss_pred EEEEECCCEEEEECCCCEEEEECCCEEEEEEECCCCCE-EEEEEEECC
T ss_conf 18998597679978997899725504799998687687-337689758
No 272
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.59 E-value=44 Score=13.86 Aligned_cols=173 Identities=14% Similarity=0.159 Sum_probs=81.3
Q ss_pred EEEECHHHHHHHHHCCCCCCC--EEECCCCCCCHHHHHHHH--CCCCCCC-CCCCHHHHHHHHHHCCCCCCEEEEEEEEC
Q ss_conf 898689998652212578431--244477542012444420--6872333-32202467687741133442158998723
Q gi|254780371|r 78 LDIVSEGELRRALAAPVPAER--IVFSGVGKTIDEIDLALQ--SGIYCFN-VESESELKTLNQRAVSLGKKAPIAFRVNP 152 (431)
Q Consensus 78 ~dv~S~~El~~al~~G~~~~~--Ii~~g~~k~~~~l~~ai~--~gv~~i~-vDs~~el~~l~~~a~~~~~~~~I~lRinp 152 (431)
.+-.++.+.....-.+-.+.+ ||..+-+-+....+..+. ..+. +. +-+...+....+.|+..+.. |+|-+=
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~klaIVIddlG~~~~~~~~i~~Lp~eVT-lA~~P~~~~~~~~~~~A~~~G~e--vlih~P- 85 (250)
T COG2861 10 ADGRRPFLQYARPWSGARGPKLAIVIDDLGLSQTGTQAILALPPEVT-LAFAPFAPHAREWAQKARNAGHE--VLIHMP- 85 (250)
T ss_pred HCCCCHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCE-EEECCCCCHHHHHHHHHHHCCCE--EEEECC-
T ss_conf 11104798836887767786389997776535777779982896634-88667883168999999856987--999656-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC-CC
Q ss_conf 77867443332233444568871111345777641563220023355641564420489999999988765310266-65
Q gi|254780371|r 153 DINANTHKKISTGKKEDKFGIPIHQIHSLYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGH-NI 231 (431)
Q Consensus 153 ~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~ 231 (431)
...-....+..|.. .-+.+.++..+-++.+..- --...|+.=|.||...+.+ ..|..+.+.+++.|. -+
T Consensus 86 -meP~~~~~~e~gtL--~~~~s~~e~~~rl~~a~~~-v~~~~GlnNhmGs~~tsn~------~aM~~~m~~Lk~r~l~fl 155 (250)
T COG2861 86 -MEPFSYPKIEPGTL--RPGMSAEEILRRLRKAMNK-VPDAVGLNNHMGSRFTSNE------DAMEKLMEALKERGLYFL 155 (250)
T ss_pred -CCCCCCCCCCCCCC--CCCCCHHHHHHHHHHHHHH-CCCCEEEHHHHHHHHCCCH------HHHHHHHHHHHHCCEEEE
T ss_conf -77556898898874--6688889999999999863-8651300123323301769------999999999987796897
Q ss_pred CEEEECC--------CCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 2688068--------73000266545531145655565421
Q gi|254780371|r 232 QHIDVGG--------GLGIAYHSDHRPPSSSDYASLIHQYF 264 (431)
Q Consensus 232 ~~ldiGG--------Gf~i~y~~~~~~~~~~~~~~~i~~~~ 264 (431)
+---+|. ++++||..-+...|-+.-.+.|.+.+
T Consensus 156 Ds~T~a~S~a~~iAk~~gVp~~~rdvfLD~e~~~~~V~kql 196 (250)
T COG2861 156 DSGTIANSLAGKIAKEIGVPVIKRDVFLDDEDTEAAVLKQL 196 (250)
T ss_pred CCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHH
T ss_conf 26652020206667633875234013304867899999999
No 273
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=26.56 E-value=44 Score=13.85 Aligned_cols=40 Identities=10% Similarity=0.105 Sum_probs=17.9
Q ss_pred CEEEEECCCCHHHHHHC--CCCCCCCCEEEEE-ECCEEEEEEE
Q ss_conf 89999679702333402--7788986659999-8896899982
Q gi|254780371|r 364 DLLYIEKTGAYGAVQSG--TYNSRLLIPEIMV-NGSQFHIIRP 403 (431)
Q Consensus 364 D~l~i~~~GAY~~s~~s--~fn~~p~p~~v~v-~~g~~~~ir~ 403 (431)
..+++..=|++.|+..- ..-.+..|..++| +|+....||.
T Consensus 441 ~Vv~i~GDG~f~m~~qEL~Tavr~~lpv~ivV~NN~~yg~i~~ 483 (574)
T PRK06882 441 TVVCVTGDGSIQMNIQELSTAKQYDIPVVIVSLNNRFLGMVKQ 483 (574)
T ss_pred CEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH
T ss_conf 5899988279865599999999968995899997985429999
No 274
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=26.56 E-value=44 Score=13.85 Aligned_cols=69 Identities=13% Similarity=0.226 Sum_probs=32.8
Q ss_pred CCCCCCHHHHHHHHHCCCCCHHHHH-------HHHH---HCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCC
Q ss_conf 8711113457776415632200233-------5564---15644204899999999887653102666526880687300
Q gi|254780371|r 173 IPIHQIHSLYAYASTLPGVKISGVD-------MHIG---SQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGI 242 (431)
Q Consensus 173 i~~~~~~~~~~~~~~~~~l~l~GlH-------~H~G---S~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i 242 (431)
++.+.+.++.+.++++ ++.+.-=- .++- .+..+ ....+-++++..+++-.--..-+--.+|+||.+..
T Consensus 195 VSm~Nir~v~~la~~~-gipl~lDaaRfaENAyFIk~RE~gy~~-~si~eI~rEmfs~aDg~tmSaKKD~~vniGG~ia~ 272 (459)
T PRK13237 195 VSMANMRAVRELCDKH-GIKVFFDATRCVENAYFIKEREEGYQD-KSIKEILKEMFSYADGATMSGKKDCLVNIGGFLAM 272 (459)
T ss_pred CCHHHHHHHHHHHHHC-CCCEEEEHHHHHHHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHEEEEEECCCCCCCCCCEEEE
T ss_conf 4689999999999980-996998766788768999834420148-99999999997440279998320253465567985
Q ss_pred C
Q ss_conf 0
Q gi|254780371|r 243 A 243 (431)
Q Consensus 243 ~ 243 (431)
.
T Consensus 273 ~ 273 (459)
T PRK13237 273 N 273 (459)
T ss_pred C
T ss_conf 7
No 275
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=26.48 E-value=44 Score=13.84 Aligned_cols=13 Identities=23% Similarity=0.330 Sum_probs=7.3
Q ss_pred EEECCCCCCCCCC
Q ss_conf 8806873000266
Q gi|254780371|r 234 IDVGGGLGIAYHS 246 (431)
Q Consensus 234 ldiGGGf~i~y~~ 246 (431)
+-.|||.+-.+.-
T Consensus 138 V~~GGg~~HR~gL 150 (269)
T cd01568 138 VRAGGGDNHRLGL 150 (269)
T ss_pred HHHCCCCCCCCCC
T ss_conf 9963722347888
No 276
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=26.45 E-value=44 Score=13.84 Aligned_cols=52 Identities=6% Similarity=0.199 Sum_probs=31.4
Q ss_pred CEEECCCCCCCHHHHHHHHCCCCCCCCCCC--HHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 124447754201244442068723333220--2467687741133442158998
Q gi|254780371|r 98 RIVFSGVGKTIDEIDLALQSGIYCFNVESE--SELKTLNQRAVSLGKKAPIAFR 149 (431)
Q Consensus 98 ~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~--~el~~l~~~a~~~~~~~~I~lR 149 (431)
.|.+.|-.++.++++.+++.|+..+++-|. ...+.+.+.+.+.+.++-++|-
T Consensus 75 pi~vGGGIrs~e~~~~~l~~GadkVvigS~a~~n~~~i~~~~~~~g~~ivvsiD 128 (241)
T PRK00748 75 PVQLGGGIRDLETVEAYLDAGVARVIIGTAAVKNPELVKEACKKFPGRIVVGLD 128 (241)
T ss_pred CEEEECCCCCHHHHHHHHHCCCCEEEECCHHHHCHHHHHHHHHHCCCCEEEEEE
T ss_conf 999827707499999999769775886471033968999998623555799998
No 277
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=26.41 E-value=44 Score=13.83 Aligned_cols=18 Identities=11% Similarity=0.137 Sum_probs=8.1
Q ss_pred CCEEEECCCCCCCCCCCC
Q ss_conf 526880687300026654
Q gi|254780371|r 231 IQHIDVGGGLGIAYHSDH 248 (431)
Q Consensus 231 ~~~ldiGGGf~i~y~~~~ 248 (431)
.+|+-+|-=||.+-.++.
T Consensus 125 ~DYv~~GpifpT~tK~~~ 142 (211)
T COG0352 125 ADYVGLGPIFPTSTKPDA 142 (211)
T ss_pred CCEEEECCCCCCCCCCCC
T ss_conf 999998886788999887
No 278
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase; InterPro: IPR010233 This entry represents an O-methyltransferase, which is believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and mitochondria (COQ3) , . A separate methylase (MenG/UbiE) catalyses the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.; GO: 0008425 2-polyprenyl-6-methoxy-14-benzoquinone methyltransferase activity, 0006744 ubiquinone biosynthetic process.
Probab=26.26 E-value=15 Score=17.03 Aligned_cols=34 Identities=21% Similarity=0.162 Sum_probs=16.3
Q ss_pred CCCCCCCCCCCHHHHH----HHHHCCCCCHHHHHHHHHHC
Q ss_conf 4456887111134577----76415632200233556415
Q gi|254780371|r 168 EDKFGIPIHQIHSLYA----YASTLPGVKISGVDMHIGSQ 203 (431)
Q Consensus 168 ~sKFGi~~~~~~~~~~----~~~~~~~l~l~GlH~H~GS~ 203 (431)
++|| |.++|+...++ .. .+.=.++.|+++|.-++
T Consensus 225 ~~KF-i~P~EL~~~l~d~N~~~-~l~~~~~~G~~YnP~~~ 262 (275)
T TIGR01983 225 WEKF-IKPSELTSWLEDDNRSA-GLRVKDVKGLVYNPIKN 262 (275)
T ss_pred CCCC-CCHHHHHHHHHHCCCCC-CEEEEEECCEEEEECCC
T ss_conf 1015-38799999985126467-64899750507630138
No 279
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=26.24 E-value=44 Score=13.81 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=13.3
Q ss_pred CEEECCCCCCCHHH-HHHHHCCCCCCCCCCC
Q ss_conf 12444775420124-4442068723333220
Q gi|254780371|r 98 RIVFSGVGKTIDEI-DLALQSGIYCFNVESE 127 (431)
Q Consensus 98 ~Ii~~g~~k~~~~l-~~ai~~gv~~i~vDs~ 127 (431)
++++.|...+++++ +.|++.++..|.+-|+
T Consensus 33 eVi~lG~~~~pe~~v~~A~~~~ad~igiSsl 63 (137)
T PRK02261 33 EVINLGVMTSQEEFIDAAIETDADAILVSSL 63 (137)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCEEEECCC
T ss_conf 4984688799999999998739999997111
No 280
>PRK13518 carboxylate-amine ligase; Provisional
Probab=26.23 E-value=44 Score=13.81 Aligned_cols=32 Identities=22% Similarity=0.268 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 2200233556415644204899999999887653
Q gi|254780371|r 191 VKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQL 224 (431)
Q Consensus 191 l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l 224 (431)
..++|.|.|+| +.|.+.-...+..+....=.+
T Consensus 131 ~li~G~HVHVG--v~d~e~av~v~n~lr~~LP~L 162 (357)
T PRK13518 131 NTTAGLHIHVG--VDDPDKAVWVANELRWHMPVL 162 (357)
T ss_pred HHHEEEEEEEC--CCCHHHHHHHHHHHHHHHHHH
T ss_conf 74610379961--797899999999888778999
No 281
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=26.02 E-value=45 Score=13.79 Aligned_cols=87 Identities=17% Similarity=0.253 Sum_probs=42.3
Q ss_pred EEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCEEECCCCCCCHHH
Q ss_conf 77999999999999861447978999641079999999999739928986899986522125784312444775420124
Q gi|254780371|r 32 YSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGVGKTIDEI 111 (431)
Q Consensus 32 ~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~S~~El~~al~~G~~~~~Ii~~g~~k~~~~l 111 (431)
+..+.|++-+..+.- -+.|. +++.+-= +.|+.+++-+.-||-.. |- ++.....
T Consensus 15 ~~~~~ik~~id~ma~--~KlN~-lH~HltD-----------dqgwrle~~~~P~lt~~---ga------~~~~~~~---- 67 (329)
T cd06568 15 FTVAEVKRYIDLLAL--YKLNV-LHLHLTD-----------DQGWRIEIKSWPKLTEI---GG------STEVGGG---- 67 (329)
T ss_pred CCHHHHHHHHHHHHH--HCCCE-EEEEEEC-----------CCCCEEEECCCCCCCCC---CC------CCCCCCC----
T ss_conf 589999999999998--38855-6888862-----------89870300787762335---66------5666888----
Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCC
Q ss_conf 4442068723333220246768774113344215899872377867443
Q gi|254780371|r 112 DLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHK 160 (431)
Q Consensus 112 ~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~ 160 (431)
..|.. +.+|++.|.+.|+.. +|||=|+++...|.
T Consensus 68 ----~~g~Y-----T~~d~~eiv~yA~~r------gI~ViPEID~PGH~ 101 (329)
T cd06568 68 ----PGGYY-----TQEDYKDIVAYAAER------HITVVPEIDMPGHT 101 (329)
T ss_pred ----CCCCC-----CHHHHHHHHHHHHHC------CCEEEECCCCCHHH
T ss_conf ----88707-----899999999999975------99897623661168
No 282
>PRK01207 methionine synthase; Provisional
Probab=25.98 E-value=45 Score=13.78 Aligned_cols=15 Identities=33% Similarity=0.476 Sum_probs=7.3
Q ss_pred HCCCCEEEE-CHHHHH
Q ss_conf 739928986-899986
Q gi|254780371|r 73 HLGSGLDIV-SEGELR 87 (431)
Q Consensus 73 ~~G~g~dv~-S~~El~ 87 (431)
++-+|+|+. .-||.+
T Consensus 46 Qe~aGiDiI~~dGE~~ 61 (343)
T PRK01207 46 FENAGLDNIGIGGEMF 61 (343)
T ss_pred HHHCCCCEECCCCCEE
T ss_conf 9984998875799260
No 283
>pfam02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain. This domain has a ferredoxin-like fold.
Probab=25.94 E-value=45 Score=13.78 Aligned_cols=100 Identities=17% Similarity=0.252 Sum_probs=43.2
Q ss_pred CCCCCCCHHHHHHHHHC---CCCCHHHHHHHHHHCCCCCHHH-----HHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCC
Q ss_conf 88711113457776415---6322002335564156442048-----999999998876531026665268806873000
Q gi|254780371|r 172 GIPIHQIHSLYAYASTL---PGVKISGVDMHIGSQIDQIESF-----HKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIA 243 (431)
Q Consensus 172 Gi~~~~~~~~~~~~~~~---~~l~l~GlH~H~GS~~~~~~~~-----~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~ 243 (431)
.+|++++.++++.+++. .++... ...|+|.+..++... ....+.+.++.+++-+ ..+..||-+..-
T Consensus 133 aVP~~~l~~~~~~~~~~~~~~~~~~~-~~gH~gdGnlH~~~~~~~~~~~~~~~~~~~~~~i~~-----~v~~~GGsiS~E 206 (247)
T pfam02913 133 SVPWSRLPDLVADIKELLAKYGLVVC-HFGHVGDGNLHLYILFDAKDPEEEERAEALFDELAD-----LAAALGGSISGE 206 (247)
T ss_pred EECHHHHHHHHHHHHHHHHHCCCCEE-EEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHH-----HHHHCCCEEEEC
T ss_conf 75599999999999999997397268-760563894699983088988999999999889999-----999769858774
Q ss_pred CCCCC--CCCCHHHHH----HHHHHHHCCCCCEEEEEECC
Q ss_conf 26654--553114565----55654210245303441011
Q gi|254780371|r 244 YHSDH--RPPSSSDYA----SLIHQYFGNLQCKIILEPGR 277 (431)
Q Consensus 244 y~~~~--~~~~~~~~~----~~i~~~~~~~~~~l~~EPGR 277 (431)
+..+. .++-...+. +.++...+.+||.=++=||+
T Consensus 207 HGiG~~k~~~l~~~~g~~~~~lm~~iK~a~DP~~IlNPGK 246 (247)
T pfam02913 207 HGVGLDKKPYLEEEFGPEGLALMRRIKAAFDPNNILNPGK 246 (247)
T ss_pred CCCCCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 8687301788998629999999999999849786789999
No 284
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=25.93 E-value=45 Score=13.78 Aligned_cols=50 Identities=14% Similarity=0.298 Sum_probs=25.4
Q ss_pred EEECCCCCCCHHHHHHHHCCCCCCCCCCC--HHHHHHHHHHCCCCCC-EEEEE
Q ss_conf 24447754201244442068723333220--2467687741133442-15899
Q gi|254780371|r 99 IVFSGVGKTIDEIDLALQSGIYCFNVESE--SELKTLNQRAVSLGKK-APIAF 148 (431)
Q Consensus 99 Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~--~el~~l~~~a~~~~~~-~~I~l 148 (431)
|.+.|-.++.++++.+++.|+.-+.+.|. .+-+.+.++++..+.. +-++|
T Consensus 77 i~vGGGIrs~e~~~~ll~~GadkViigs~a~~~p~~i~~~~~~fG~q~Ivvsi 129 (253)
T PRK01033 77 LCYGGGIKTVEQAKRIFSLGVEKVSISTAALEDPKLITEAAEIYGSQSVVVSI 129 (253)
T ss_pred EEEECCCCCHHHHHHHHHCCCCEEEECCHHHHCCHHHHHHHHHCCCCCEEEEE
T ss_conf 89868812168889998679866999987863741657899877997699999
No 285
>pfam03849 Tfb2 Transcription factor Tfb2.
Probab=25.79 E-value=19 Score=16.32 Aligned_cols=109 Identities=17% Similarity=0.258 Sum_probs=44.8
Q ss_pred CEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12444775420124444206872333322024676877411334421589987237786744333223344456887111
Q gi|254780371|r 98 RIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQ 177 (431)
Q Consensus 98 ~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~ 177 (431)
+++|.....+.++++..+......-.-+++.-|..+.=.-........-.+++||.+...-...+..|+...-||.+..+
T Consensus 38 rlL~~~~pv~~~~l~~Wv~~~~~~~~~~al~~L~~L~i~~~~~~~~~~~~~~Ln~~F~~~lr~aL~gg~~~~~~~~~~~~ 117 (365)
T pfam03849 38 RMLFVDQPVPAADLDKWVKPESKKQHEEAIKRLKSLHIITETPSGGKKQSIRLNPTFKKNLRRALTGGGVNNSFGVPSDE 117 (365)
T ss_pred HHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCEEEEECCCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 99836998799999988481125899999999986815786267887524887889999999998289978766767766
Q ss_pred CHH---HHHHHHHCCCCCHHH-HHHHHHHCCCC
Q ss_conf 134---577764156322002-33556415644
Q gi|254780371|r 178 IHS---LYAYASTLPGVKISG-VDMHIGSQIDQ 206 (431)
Q Consensus 178 ~~~---~~~~~~~~~~l~l~G-lH~H~GS~~~~ 206 (431)
... -++.+.++..-+... +||-+||....
T Consensus 118 ~~~~~~~~~~Ld~yA~~~WE~IL~~mVgs~~~~ 150 (365)
T pfam03849 118 PDKKLVDVAFLDSYAREKWETILHYMVGSSEAK 150 (365)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 556889999999999999999999981982246
No 286
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=25.76 E-value=45 Score=13.76 Aligned_cols=72 Identities=22% Similarity=0.352 Sum_probs=42.3
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 23355641564420489999999988765310266652688068730002665455311456555654210245303441
Q gi|254780371|r 195 GVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQYFGNLQCKIILE 274 (431)
Q Consensus 195 GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~~~~~~~~~l~~E 274 (431)
-|=+++||-+...+ +.+..++++++.....+++|++|-- ++...-++.|.+.+...-. ---+.+-
T Consensus 109 RIv~FVgSPi~~~e------k~l~~laKklKKnnV~vDII~FGe~-------~~n~~kL~~f~~~vn~~~~--Shlv~ip 173 (187)
T cd01452 109 RIVAFVGSPIEEDE------KDLVKLAKRLKKNNVSVDIINFGEI-------DDNTEKLTAFIDAVNGKDG--SHLVSVP 173 (187)
T ss_pred EEEEEECCCCCCCH------HHHHHHHHHHHHCCCCEEEEEECCC-------CCCHHHHHHHHHHHCCCCC--CEEEEEC
T ss_conf 79999789875578------9999999987555853589994688-------8998999999998458998--2599947
Q ss_pred ECCEECC
Q ss_conf 0111203
Q gi|254780371|r 275 PGRFLVA 281 (431)
Q Consensus 275 PGR~lva 281 (431)
||--+..
T Consensus 174 pg~~lLS 180 (187)
T cd01452 174 PGENLLS 180 (187)
T ss_pred CCCCHHH
T ss_conf 9986456
No 287
>PRK12394 putative metallo-dependent hydrolase; Provisional
Probab=25.63 E-value=45 Score=13.74 Aligned_cols=11 Identities=9% Similarity=0.658 Sum_probs=6.0
Q ss_pred CEEEEEECCEE
Q ss_conf 65999988968
Q gi|254780371|r 388 IPEIMVNGSQF 398 (431)
Q Consensus 388 p~~v~v~~g~~ 398 (431)
-|+..+.+|+.
T Consensus 361 ~p~~ti~~G~i 371 (387)
T PRK12394 361 VPQMTIKSGEI 371 (387)
T ss_pred EEEEEEECCEE
T ss_conf 67699999999
No 288
>TIGR03264 met_CoM_red_C methyl-coenzyme M reductase I operon protein C. has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this protein occurs only operons of type I. The precise function is unknown.
Probab=25.43 E-value=46 Score=13.72 Aligned_cols=66 Identities=17% Similarity=0.261 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHCCCCCCC---CCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 420124444206872333---3220246768774113344215899872377867443332233444568871111345
Q gi|254780371|r 106 KTIDEIDLALQSGIYCFN---VESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSL 181 (431)
Q Consensus 106 k~~~~l~~ai~~gv~~i~---vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~ 181 (431)
..++-+..|..-|-++|+ +|-...| ++.+....+++ +|.+-+...... .++..+.||+.++|+..+
T Consensus 31 ~~~dViavaMSPGrRHItKPVCeIT~~l-------R~~gi~~s~lV-LnAGsGvP~dap--~~g~G~~FGl~~~Ei~qi 99 (194)
T TIGR03264 31 GRNDVVAVAMSPGRRHITKPVCEITYAL-------REAGIQTSVLV-LNAGSGIPPDAP--RGGGGSTFGLTPEEIEQI 99 (194)
T ss_pred CCCCEEEEEECCCCCCCCCCHHHHHHHH-------HHCCCEEEEEE-EECCCCCCCCCC--CCCCCCCCCCCHHHHHHH
T ss_conf 7888899960798666787345343687-------75795577999-957999899876--677776427799999986
No 289
>PRK09800 putative selenate reductase subunit YgfN; Provisional
Probab=25.42 E-value=44 Score=13.81 Aligned_cols=15 Identities=33% Similarity=0.614 Sum_probs=9.8
Q ss_pred CCCCEEEECCCCCCC
Q ss_conf 665268806873000
Q gi|254780371|r 229 HNIQHIDVGGGLGIA 243 (431)
Q Consensus 229 ~~~~~ldiGGGf~i~ 243 (431)
+.+-.-++|||||..
T Consensus 406 VrVi~~~vGGgFG~K 420 (928)
T PRK09800 406 VHVIKERVGGGFGSK 420 (928)
T ss_pred EEEEECCCCCCCCCC
T ss_conf 899967788878887
No 290
>PRK12839 hypothetical protein; Provisional
Probab=25.26 E-value=46 Score=13.69 Aligned_cols=13 Identities=23% Similarity=0.271 Sum_probs=7.3
Q ss_pred EEEECCCHHHHHH
Q ss_conf 9982489889973
Q gi|254780371|r 400 IIRPRMTFQELIE 412 (431)
Q Consensus 400 ~ir~ret~ed~~~ 412 (431)
.+.+.+|+|+|-+
T Consensus 425 ~~~kadTleELA~ 437 (574)
T PRK12839 425 YLVKGRTIEELAQ 437 (574)
T ss_pred CEEECCCHHHHHH
T ss_conf 0675499999998
No 291
>TIGR03473 HpnK hopanoid biosynthesis associated protein HpnK. The sequences represented by this model are members of the pfam04794 "YdjC-like" family of uncharacterized proteins. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0976) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnK) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopanoid biosynthesis locus was described consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a ph
Probab=25.11 E-value=46 Score=13.68 Aligned_cols=21 Identities=14% Similarity=0.423 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHCCCCCCCEEE
Q ss_conf 999988765310266652688
Q gi|254780371|r 215 KLLRDLTQQLRSNGHNIQHID 235 (431)
Q Consensus 215 ~~~~~~~~~l~~~g~~~~~ld 235 (431)
+++..-.+++.+.|..+++||
T Consensus 108 ~E~~AQie~f~~~G~~ptHiD 128 (283)
T TIGR03473 108 REIRAQFEAFAATGLPLDHVN 128 (283)
T ss_pred HHHHHHHHHHHHHCCCCCCCC
T ss_conf 999999999998099975304
No 292
>TIGR01066 rplM_bact ribosomal protein L13; InterPro: IPR005823 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . Ribosomal protein L13 is one of the proteins from the large ribosomal subunit . In Escherichia coli, L13 is known to be one of the early assembly proteins of the 50S ribosomal subunit. This entry represents ribosomal protein L13 from bacteria, mitochondria and chloroplasts.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome.
Probab=25.09 E-value=43 Score=13.87 Aligned_cols=60 Identities=15% Similarity=0.097 Sum_probs=28.1
Q ss_pred CCCCCCCEEEEECCCCHHHHHHCCCCCCCCC-EEEEEECCEEEEEEECCCHHHHHHCCCCCHHHHHCCC
Q ss_conf 6688888999967970233340277889866-5999988968999824898899730888568862343
Q gi|254780371|r 358 ALPRPGDLLYIEKTGAYGAVQSGTYNSRLLI-PEIMVNGSQFHIIRPRMTFQELIELDSIPAWLQKTPK 425 (431)
Q Consensus 358 p~l~~GD~l~i~~~GAY~~s~~s~fn~~p~p-~~v~v~~g~~~~ir~ret~ed~~~~~~~p~~~~~~~~ 425 (431)
|....||+|+|-||===-+ -|.-+- ..+..-.|-+--+ +..|+++|+. +..|+.+=+.|.
T Consensus 47 P~~D~GD~VIvINA~Kv~l------TG~K~~~K~Yy~HSgypGG~-k~~t~~~m~~-~r~P~~~~~~AV 107 (145)
T TIGR01066 47 PHVDCGDYVIVINAEKVRL------TGKKLEQKLYYRHSGYPGGL-KSRTFEEMIA-DRKPEKVLELAV 107 (145)
T ss_pred CCCCCCCEEEEEECCCEEE------CCCCCCCCEEEEECCCCCCC-CHHHHHHHHH-CCCCCHHHHHHH
T ss_conf 7861487269970475786------38765683788866834887-0034899974-278102478650
No 293
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=25.07 E-value=47 Score=13.67 Aligned_cols=56 Identities=14% Similarity=0.070 Sum_probs=28.2
Q ss_pred HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-----CCEEEEEECCEE
Q ss_conf 9998876531026665268806873000266545531145655565421024-----530344101112
Q gi|254780371|r 216 LLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQYFGNL-----QCKIILEPGRFL 279 (431)
Q Consensus 216 ~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~~~~~~-----~~~l~~EPGR~l 279 (431)
.+.+..+.+++.|+.=--+|+==|+ | ..+.+.|.+.+.+.+.-. -+.|.+|||..+
T Consensus 140 ~~~~ai~~~r~~Gf~nIsiDLIyGl--P------gQT~~~~~~~L~~~l~l~p~HiS~Y~LtiE~gT~~ 200 (353)
T PRK05904 140 DSKEAINLLHKNGIYNISCDFLYCL--P------ILKLKDLDEVFNFILKHKINHISFYSLEIKEGSIL 200 (353)
T ss_pred HHHHHHHHHHHHCCCEEEECEEECC--C------CCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHH
T ss_conf 9999999999819973600426359--9------99999999999999965999178888898579732
No 294
>pfam04244 DPRP Deoxyribodipyrimidine photo-lyase-related protein. This family appears to be related to pfam00875.
Probab=25.06 E-value=47 Score=13.67 Aligned_cols=21 Identities=24% Similarity=0.591 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHCCCCCCCEEE
Q ss_conf 999988765310266652688
Q gi|254780371|r 215 KLLRDLTQQLRSNGHNIQHID 235 (431)
Q Consensus 215 ~~~~~~~~~l~~~g~~~~~ld 235 (431)
..|..+++.+++.|+++.++.
T Consensus 49 sAMRhfa~~L~~~G~~V~Y~~ 69 (223)
T pfam04244 49 SAMRHFAEELRAAGHTVIYLT 69 (223)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
T ss_conf 999999999986698368986
No 295
>pfam09871 DUF2098 Uncharacterized protein conserved in archaea (DUF2098). This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=24.78 E-value=47 Score=13.64 Aligned_cols=33 Identities=27% Similarity=0.314 Sum_probs=23.0
Q ss_pred EECCEECCCCCEEEEEEEEECCCCCCCCEEECC
Q ss_conf 101112036632588876403468974220055
Q gi|254780371|r 274 EPGRFLVADVGILVTKVISIKKSADKTFVILDV 306 (431)
Q Consensus 274 EPGR~lva~ag~ll~~V~~vK~~~~~~~~~vD~ 306 (431)
+-|.++-=.---++.+|.++|.-.+..|+.+|.
T Consensus 4 ~vG~~VrY~~TgT~G~V~~ik~e~~~~wv~LDs 36 (91)
T pfam09871 4 KVGSYVRYINTGTVGTVKDIKEENGRTWVLLDS 36 (91)
T ss_pred EECCEEEECCCCCEEEEEEEEECCCCEEEEEEC
T ss_conf 116569976799568899989728976999826
No 296
>pfam07485 DUF1529 Domain of Unknown Function (DUF1259). This family is the lppY/lpqO homologue family.
Probab=24.74 E-value=47 Score=13.63 Aligned_cols=31 Identities=10% Similarity=0.253 Sum_probs=26.2
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 56887111134577764156322002335564
Q gi|254780371|r 170 KFGIPIHQIHSLYAYASTLPGVKISGVDMHIG 201 (431)
Q Consensus 170 KFGi~~~~~~~~~~~~~~~~~l~l~GlH~H~G 201 (431)
-|-+..+|+..+++.+++ .||++..||=|.-
T Consensus 62 d~vl~e~EVnpv~~~l~~-~GI~VtAlHNH~l 92 (123)
T pfam07485 62 DFVLLEDEVNPVMSALRA-NGIEVTALHNHWL 92 (123)
T ss_pred CEEECHHHHHHHHHHHHH-CCCEEEEEECCCC
T ss_conf 477248788899999997-8986999874577
No 297
>PRK09262 hypothetical protein; Provisional
Probab=24.72 E-value=36 Score=14.40 Aligned_cols=14 Identities=21% Similarity=0.510 Sum_probs=5.2
Q ss_pred EEEEEEECCCCCEE
Q ss_conf 99981000566665
Q gi|254780371|r 338 ADIVGPICETGDFI 351 (431)
Q Consensus 338 ~~i~G~~C~~~D~l 351 (431)
..+.|-+..++|++
T Consensus 153 I~~gGv~V~PGD~I 166 (227)
T PRK09262 153 VVCAGALVNPGDVV 166 (227)
T ss_pred EEECCEEECCCCEE
T ss_conf 88899998899999
No 298
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=24.70 E-value=47 Score=13.63 Aligned_cols=88 Identities=19% Similarity=0.136 Sum_probs=52.0
Q ss_pred ECCCCHHH--HHHHHHCCCCEEEECHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHH-H
Q ss_conf 10799999--99999739928986899986522125784312444775420124444206872333322024676877-4
Q gi|254780371|r 60 KANSNQAV--IKTLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQ-R 136 (431)
Q Consensus 60 KaN~~~~i--l~~l~~~G~g~dv~S~~El~~al~~G~~~~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~-~ 136 (431)
|++-...| -+.|.+.|.-+==.-.+|+-+-+. +-+|..|+.-.--|++++++..++..-...+-|+.+|+-+..+ .
T Consensus 110 KSmvseEIgln~~Le~~G~ev~ETDLGE~IlQl~-~~~PsHIV~PAlH~~reqIa~if~ekl~~~~~~~~eel~~~aR~~ 188 (459)
T COG1139 110 KSMVSEEIGLNHYLEEKGIEVWETDLGELILQLA-GEPPSHIVAPALHKNREQIAEIFKEKLGYEGEDTPEELTAAAREF 188 (459)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHC-CCCCCCEECCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 2315877526899987498478725889999863-899863342120369999999999863898899989999999999
Q ss_pred HCCCCCCEEEEE
Q ss_conf 113344215899
Q gi|254780371|r 137 AVSLGKKAPIAF 148 (431)
Q Consensus 137 a~~~~~~~~I~l 148 (431)
.++.-.+++|||
T Consensus 189 lR~kfl~AdvGI 200 (459)
T COG1139 189 LREKFLKADVGI 200 (459)
T ss_pred HHHHHHHCCCCC
T ss_conf 999876236566
No 299
>pfam03320 FBPase_glpX Bacterial fructose-1,6-bisphosphatase, glpX-encoded.
Probab=24.47 E-value=48 Score=13.60 Aligned_cols=35 Identities=6% Similarity=0.096 Sum_probs=16.3
Q ss_pred HHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 777641563220023355641564420489999999988
Q gi|254780371|r 182 YAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDL 220 (431)
Q Consensus 182 ~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~ 220 (431)
++.+.+..+..+.-|..-+ +|-..+.+.++.+.++
T Consensus 141 l~~~A~a~~k~v~dltV~v----LdRpRH~~lI~eir~~ 175 (308)
T pfam03320 141 LKAVAKALGKDVEDLTVVV----LDRPRHAELIEEIREA 175 (308)
T ss_pred HHHHHHHCCCCHHHEEEEE----EECCHHHHHHHHHHHC
T ss_conf 9999997099966838999----9752679999999973
No 300
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=24.38 E-value=48 Score=13.59 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=8.3
Q ss_pred HHHHHCCCCCEEEEEECC
Q ss_conf 654210245303441011
Q gi|254780371|r 260 IHQYFGNLQCKIILEPGR 277 (431)
Q Consensus 260 i~~~~~~~~~~l~~EPGR 277 (431)
++..+.+.+|-+++||=+
T Consensus 156 L~aAIrd~dPViflE~k~ 173 (324)
T COG0022 156 LKAAIRDPDPVIFLEHKR 173 (324)
T ss_pred HHHHHCCCCCEEEEECHH
T ss_conf 999825899879973288
No 301
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=23.93 E-value=49 Score=13.53 Aligned_cols=13 Identities=15% Similarity=0.350 Sum_probs=6.5
Q ss_pred EEEECCCHHHHHH
Q ss_conf 9982489889973
Q gi|254780371|r 400 IIRPRMTFQELIE 412 (431)
Q Consensus 400 ~ir~ret~ed~~~ 412 (431)
.+.+.+|+|+|-.
T Consensus 423 ~~~kadTleELA~ 435 (579)
T PRK06134 423 YLKRGASIEELAR 435 (579)
T ss_pred EEEECCCHHHHHH
T ss_conf 0686199999998
No 302
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=23.84 E-value=49 Score=13.52 Aligned_cols=58 Identities=19% Similarity=0.171 Sum_probs=29.7
Q ss_pred HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-----CCEEEEEECCEECC
Q ss_conf 9998876531026665268806873000266545531145655565421024-----53034410111203
Q gi|254780371|r 216 LLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQYFGNL-----QCKIILEPGRFLVA 281 (431)
Q Consensus 216 ~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~~~~~~-----~~~l~~EPGR~lva 281 (431)
.+.+....+++.|+.-=-+|+==|+| ..+.+.|...|.+.+.-- -+.|.+|||-.+..
T Consensus 140 ~~~~~i~~~~~~gf~~iniDLIyGlP--------gQt~~~~~~~l~~~~~l~p~hiS~Y~L~iep~t~~~~ 202 (374)
T PRK06294 140 AAIEAVLECYEHGFSNLSIDLIYGLP--------TQSLSDFIMDLHQALTLPITHISLYNLTIDPHTSFYK 202 (374)
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCC--------CCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHH
T ss_conf 99999999997599743321104788--------8888999999999973496745555557658965888
No 303
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=23.78 E-value=49 Score=13.51 Aligned_cols=93 Identities=16% Similarity=0.188 Sum_probs=38.6
Q ss_pred CCCCCCHHHHHHHHHHC---CCCCCEEEEEEEECCCCCCCCC----CCCCCCCCCCCCCCCCCCHHHHHHHHHCCC-CCH
Q ss_conf 33322024676877411---3344215899872377867443----332233444568871111345777641563-220
Q gi|254780371|r 122 FNVESESELKTLNQRAV---SLGKKAPIAFRVNPDINANTHK----KISTGKKEDKFGIPIHQIHSLYAYASTLPG-VKI 193 (431)
Q Consensus 122 i~vDs~~el~~l~~~a~---~~~~~~~I~lRinp~~~~~~~~----~~~tg~~~sKFGi~~~~~~~~~~~~~~~~~-l~l 193 (431)
..+++.+++..+.+.|- ..+++.+|.|-+=.++-..... ....-....+.+.+.+++.++++.+++... +-+
T Consensus 147 ~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~AkrPvii 226 (568)
T PRK08327 147 YELRRGEQIKEVVRRAHQIAQSEPKGPVYLTLPREVLAETEDGVALPAGRQMSPAPPAPDPEDIQRAAEMLAAAERPVII 226 (568)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 03699999999999999998446998769978466653615455677444578789999999999999999836797475
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 0233556415644204899999999887653
Q gi|254780371|r 194 SGVDMHIGSQIDQIESFHKAFKLLRDLTQQL 224 (431)
Q Consensus 194 ~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l 224 (431)
. |.+... ..+.+.+.++++++
T Consensus 227 ~------G~G~~~----~~a~~~l~~lae~l 247 (568)
T PRK08327 227 T------QRGGRR----AEAFASLDRLAEEL 247 (568)
T ss_pred C------CCCCCH----HHHHHHHHHHHHHC
T ss_conf 1------787335----78999999998754
No 304
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=23.57 E-value=50 Score=13.48 Aligned_cols=51 Identities=18% Similarity=0.120 Sum_probs=28.3
Q ss_pred CEEECCCCCCCHHHHHHHHCCCCCCCCCC--CHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 12444775420124444206872333322--0246768774113344215899
Q gi|254780371|r 98 RIVFSGVGKTIDEIDLALQSGIYCFNVES--ESELKTLNQRAVSLGKKAPIAF 148 (431)
Q Consensus 98 ~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs--~~el~~l~~~a~~~~~~~~I~l 148 (431)
.|.+.|-.++.++++.+++.|+..+++-| +.+.+.+.+.+.+.+.++-+++
T Consensus 78 ~iqvGGGIRs~e~i~~~l~~G~~rViigT~a~~~~~~l~~~~~~f~~~Ivv~i 130 (234)
T PRK13587 78 DIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLSV 130 (234)
T ss_pred CEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 67984654759999999976899999888130286999999986667768712
No 305
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=23.55 E-value=50 Score=13.48 Aligned_cols=107 Identities=18% Similarity=0.212 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHH---HHHHHHCCCCEEEECHHHH-----HHHHHCCCCCCCEEEC-CC
Q ss_conf 9999999999998614479789996410799999---9999973992898689998-----6522125784312444-77
Q gi|254780371|r 34 TTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAV---IKTLAHLGSGLDIVSEGEL-----RRALAAPVPAERIVFS-GV 104 (431)
Q Consensus 34 ~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~i---l~~l~~~G~g~dv~S~~El-----~~al~~G~~~~~Ii~~-g~ 104 (431)
.+.+++-.+.++..|...+..+ +.+-......+ +.-+.+-|..+=+.+-|.. +.|...|.+...+-.. |.
T Consensus 37 ~~~~~~~~~~L~~v~~t~~~~~-~ll~gsGt~amEAav~sl~~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~ 115 (383)
T COG0075 37 VGIMKEVLEKLRKVFGTENGDV-VLLSGSGTLAMEAAVASLVEPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEWGE 115 (383)
T ss_pred HHHHHHHHHHHHHHHCCCCCCE-EEECCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 9999999999999966888747-997688379999999860589986999827807779999999829966998478888
Q ss_pred CCCCHHHHHHHHCC--CCC---CCCCC----CHHHHHHHHHHCCCC
Q ss_conf 54201244442068--723---33322----024676877411334
Q gi|254780371|r 105 GKTIDEIDLALQSG--IYC---FNVES----ESELKTLNQRAVSLG 141 (431)
Q Consensus 105 ~k~~~~l~~ai~~g--v~~---i~vDs----~~el~~l~~~a~~~~ 141 (431)
..++++++.+++.+ +.. ++.|+ ++.++.|..++++.+
T Consensus 116 ~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~~g 161 (383)
T COG0075 116 AVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAKAAKEHG 161 (383)
T ss_pred CCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCC
T ss_conf 7999999999852899508999811575201376999999999729
No 306
>PRK12474 hypothetical protein; Provisional
Probab=23.54 E-value=50 Score=13.48 Aligned_cols=39 Identities=10% Similarity=0.184 Sum_probs=18.5
Q ss_pred CEEEEECCCCHHHHHHC--CCCCCCCCEEEEE-ECCEEEEEE
Q ss_conf 89999679702333402--7788986659999-889689998
Q gi|254780371|r 364 DLLYIEKTGAYGAVQSG--TYNSRLLIPEIMV-NGSQFHIIR 402 (431)
Q Consensus 364 D~l~i~~~GAY~~s~~s--~fn~~p~p~~v~v-~~g~~~~ir 402 (431)
..++|..=|++.|++.. .--.+..|..++| +|+....|+
T Consensus 409 ~Vv~i~GDG~f~m~~~EL~Tavr~~lpi~~vV~NN~~yg~i~ 450 (518)
T PRK12474 409 KVVCPQGDGGAAYTMQALWTMARENLDVTVVIFANRSYAILN 450 (518)
T ss_pred CEEEEECCCCHHCCHHHHHHHHHHCCCEEEEEEECCCCHHHH
T ss_conf 189994781041079999999997859299999786301699
No 307
>PRK13515 carboxylate-amine ligase; Provisional
Probab=23.52 E-value=50 Score=13.48 Aligned_cols=29 Identities=17% Similarity=0.285 Sum_probs=17.6
Q ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 2200233556415644204899999999887
Q gi|254780371|r 191 VKISGVDMHIGSQIDQIESFHKAFKLLRDLT 221 (431)
Q Consensus 191 l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~ 221 (431)
..++|.|.|+| +.|.+.-...+..+....
T Consensus 124 ~~i~G~HVHVg--v~d~e~av~v~n~lr~~L 152 (381)
T PRK13515 124 SLICGMHVHVG--VPDSEDRMALMNQVLYFL 152 (381)
T ss_pred HHHEEEEEEEC--CCCHHHHHHHHHHHHHHH
T ss_conf 43242389836--898899999999999888
No 308
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=23.47 E-value=50 Score=13.47 Aligned_cols=21 Identities=29% Similarity=0.618 Sum_probs=10.7
Q ss_pred EEECCCC---CCCHHHHHHHHCCC
Q ss_conf 2444775---42012444420687
Q gi|254780371|r 99 IVFSGVG---KTIDEIDLALQSGI 119 (431)
Q Consensus 99 Ii~~g~~---k~~~~l~~ai~~gv 119 (431)
+.++|-+ .+-.||+.|+++++
T Consensus 72 v~i~GDG~f~m~~~El~Ta~r~~l 95 (183)
T cd02005 72 ILLVGDGSFQMTVQELSTMIRYGL 95 (183)
T ss_pred EEEECCHHHHHHHHHHHHHHHHCC
T ss_conf 999567367620889999998299
No 309
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=23.43 E-value=50 Score=13.47 Aligned_cols=125 Identities=17% Similarity=0.280 Sum_probs=65.3
Q ss_pred HHHHHCCCCEEEEEH-HHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCE-EEECHH-HHHHHHHCCCCC
Q ss_conf 999974997899779-99999999999861447978999641079999999999739928-986899-986522125784
Q gi|254780371|r 20 KLAHVVQTPFYCYST-TAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGL-DIVSEG-ELRRALAAPVPA 96 (431)
Q Consensus 20 ~La~~~gTP~yV~d~-~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~-dv~S~~-El~~al~~G~~~ 96 (431)
.||+.|| |++-. .+|.-.++..+ .||..+.-+.=.+= .||.|.+.|.+.|..+ +..... ++. .++.
T Consensus 48 ~LA~~~G---FC~GVeRAI~ia~ea~~-~~p~~~Iy~~geII--HNp~Vv~~L~~~Gv~~i~~~~~~kd~~-----~v~~ 116 (392)
T PRK13371 48 KLAEAFG---FCWGVERAVAMAYETRR-HFPDERIWITNEII--HNPSVNQHLREMGVKFIPVEQGVKDFS-----VVTP 116 (392)
T ss_pred EEHHHCC---CCCCHHHHHHHHHHHHH-HCCCCCEEEECCCC--CCHHHHHHHHHCCCEEEECCCCCCCCC-----CCCC
T ss_conf 9665468---75358999999999998-68999789717874--697999999977999962456666320-----0899
Q ss_pred -CCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHH-HHHHHHHHCCCCC-CEEEEEEEECCCCCCCCCCC
Q ss_conf -312444775420124444206872333322024-6768774113344-21589987237786744333
Q gi|254780371|r 97 -ERIVFSGVGKTIDEIDLALQSGIYCFNVESESE-LKTLNQRAVSLGK-KAPIAFRVNPDINANTHKKI 162 (431)
Q Consensus 97 -~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~e-l~~l~~~a~~~~~-~~~I~lRinp~~~~~~~~~~ 162 (431)
+.+|+..-+-+++.++.+-+.|+.+ +|..-- +.++...+.++.+ ...+.| +|-..|+.+
T Consensus 117 gdvVIi~AHGvs~~v~~~l~~kgl~i--vDATCP~V~KV~~~v~k~~k~gy~iII-----~G~~~HpEv 178 (392)
T PRK13371 117 GDVVILPAFGATVQEMQLLHEKGCHI--VDTTCPWVSKVWNTVEKHKKHGFTSII-----HGKYKHEET 178 (392)
T ss_pred CCEEEEECCCCCHHHHHHHHHCCCEE--EECCCCCCHHHHHHHHHHHHCCCEEEE-----ECCCCCCCE
T ss_conf 99899969999978999999889979--968983619999999999968985999-----778898715
No 310
>cd01204 IRS_PTB Insulin receptor substrate (IRS) Phosphotyrosine-binding domain(PTB). This domain has a PH-like fold and is found in insulin receptor substrate molecules. IRS molecules have an N-terminal PH domain , which is followed by an IRS-like PTB domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs in the insulin receptor, IGF-I receptor and the IL-4 receptor.
Probab=23.39 E-value=50 Score=13.46 Aligned_cols=28 Identities=29% Similarity=0.297 Sum_probs=21.1
Q ss_pred CCCCCEEEEEECCEECCCCCEEEEEEEE
Q ss_conf 0245303441011120366325888764
Q gi|254780371|r 265 GNLQCKIILEPGRFLVADVGILVTKVIS 292 (431)
Q Consensus 265 ~~~~~~l~~EPGR~lva~ag~ll~~V~~ 292 (431)
++.+--+++|.||.-+-.+|-+.+.|-|
T Consensus 56 Gh~~~~FfiE~GRss~~G~GElWMq~~D 83 (104)
T cd01204 56 GHSENFFFIEVGRSAVTGPGELWMQVDD 83 (104)
T ss_pred CCCCCEEEEECCCCCCCCCCEEEEECCC
T ss_conf 6766579998055367799638998463
No 311
>KOG1250 consensus
Probab=23.33 E-value=50 Score=13.45 Aligned_cols=77 Identities=22% Similarity=0.190 Sum_probs=46.1
Q ss_pred EEEEECCCCHHHHHHHHHCC--CCEEEECHHHHH-----HHHHCCCCCCCEEECCCCCCCH-HHHHHHHCCCCC-CCCCC
Q ss_conf 99641079999999999739--928986899986-----5221257843124447754201-244442068723-33322
Q gi|254780371|r 56 CYALKANSNQAVIKTLAHLG--SGLDIVSEGELR-----RALAAPVPAERIVFSGVGKTID-EIDLALQSGIYC-FNVES 126 (431)
Q Consensus 56 ~yAvKaN~~~~il~~l~~~G--~g~dv~S~~El~-----~al~~G~~~~~Ii~~g~~k~~~-~l~~ai~~gv~~-i~vDs 126 (431)
-++-|---.-..+..+.+.+ .|+=|+|.|--. .|.+.|+|. .|+. |.-++. -++.+-..|+.. +.=++
T Consensus 93 sgSFK~RGa~~~~~kla~~~~~~gViasSaGNha~a~Ayaa~~Lgipa-TIVm--P~~tp~~kiq~~~nlGA~Vil~G~~ 169 (457)
T KOG1250 93 SGSFKIRGAGNALQKLAKQQKKAGVIASSAGNHAQAAAYAARKLGIPA-TIVM--PVATPLMKIQRCRNLGATVILSGED 169 (457)
T ss_pred CCCEEHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCCCCE-EEEE--CCCCHHHHHHHHHCCCCEEEEECCC
T ss_conf 453130317889998787621674697057528999998887619966-9992--2787399999986149879995643
Q ss_pred CHHHHHHHH
Q ss_conf 024676877
Q gi|254780371|r 127 ESELKTLNQ 135 (431)
Q Consensus 127 ~~el~~l~~ 135 (431)
++|.+.+..
T Consensus 170 ~deAk~~a~ 178 (457)
T KOG1250 170 WDEAKAFAK 178 (457)
T ss_pred HHHHHHHHH
T ss_conf 789999999
No 312
>pfam04309 G3P_antiterm Glycerol-3-phosphate responsive antiterminator. Intracellular glycerol is usually converted to glycerol-3-phosphate in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK) glycerol-3-phosphate activates the antiterminator GlpP.
Probab=23.24 E-value=50 Score=13.44 Aligned_cols=42 Identities=19% Similarity=0.142 Sum_probs=25.9
Q ss_pred CCCCCHHHHHHHHCCCCCC--CCCCCHHHHHHHHHHCCCCCCEE
Q ss_conf 7542012444420687233--33220246768774113344215
Q gi|254780371|r 104 VGKTIDEIDLALQSGIYCF--NVESESELKTLNQRAVSLGKKAP 145 (431)
Q Consensus 104 ~~k~~~~l~~ai~~gv~~i--~vDs~~el~~l~~~a~~~~~~~~ 145 (431)
..|+.++|+.|++..+.++ ---++.+|..+.+.+++.++.+=
T Consensus 4 Avr~~~~l~~al~s~~~~vfll~g~I~~l~~~v~~~k~~gK~vf 47 (174)
T pfam04309 4 AIRNLKDLDRALESEYQVVFLLTGHILNLKEIVKLLKQRGKTVF 47 (174)
T ss_pred EECCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEE
T ss_conf 10678899999849998999955808789999999998799899
No 313
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=23.10 E-value=51 Score=13.42 Aligned_cols=15 Identities=33% Similarity=0.614 Sum_probs=9.7
Q ss_pred CCCCEEEECCCCCCC
Q ss_conf 665268806873000
Q gi|254780371|r 229 HNIQHIDVGGGLGIA 243 (431)
Q Consensus 229 ~~~~~ldiGGGf~i~ 243 (431)
+.+-.-++|||||..
T Consensus 430 VRVi~~~vGGgFG~K 444 (951)
T TIGR03313 430 VHVIKERVGGGFGSK 444 (951)
T ss_pred EEEEECCCCCCCCCC
T ss_conf 799967888878887
No 314
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=22.94 E-value=51 Score=13.40 Aligned_cols=17 Identities=18% Similarity=0.341 Sum_probs=8.8
Q ss_pred CCHHHHHHHHHHHHHHH
Q ss_conf 42048999999998876
Q gi|254780371|r 206 QIESFHKAFKLLRDLTQ 222 (431)
Q Consensus 206 ~~~~~~~~~~~~~~~~~ 222 (431)
||+....+++.+.++.+
T Consensus 247 DP~~~~~~i~~i~~li~ 263 (383)
T CHL00197 247 DPSTVHYGIKTVKKLIK 263 (383)
T ss_pred CHHHHHHHHHHHHHHHH
T ss_conf 97898999999999996
No 315
>PRK07586 hypothetical protein; Validated
Probab=22.93 E-value=51 Score=13.40 Aligned_cols=66 Identities=8% Similarity=-0.045 Sum_probs=26.2
Q ss_pred CCCCCHHHHHHHHHHC---CCCCCEEEEEEEECCCCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 3322024676877411---33442158998723778674433-322334445688711113457776415
Q gi|254780371|r 123 NVESESELKTLNQRAV---SLGKKAPIAFRVNPDINANTHKK-ISTGKKEDKFGIPIHQIHSLYAYASTL 188 (431)
Q Consensus 123 ~vDs~~el~~l~~~a~---~~~~~~~I~lRinp~~~~~~~~~-~~tg~~~sKFGi~~~~~~~~~~~~~~~ 188 (431)
.+.+.+++....+.|- ..+++.+|.|-+-.++....... ........+-..+.+.+.++++.+++.
T Consensus 128 ~v~~~~~i~~~~~~A~~~A~s~~~GPv~l~lP~Dv~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~L~~A 197 (514)
T PRK07586 128 TSESAADVGADAAAAVAAARSAPGQVATLILPADTAWSEGGGAAPVPPAPAPAAVDPAAVEAAAKALRSG 197 (514)
T ss_pred EECCHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 9368112599999999998537999625526444411545776667777889998999999999998517
No 316
>PRK12415 fructose 1,6-bisphosphatase II; Reviewed
Probab=22.87 E-value=51 Score=13.39 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=12.4
Q ss_pred CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 3220023355641564420489999999988
Q gi|254780371|r 190 GVKISGVDMHIGSQIDQIESFHKAFKLLRDL 220 (431)
Q Consensus 190 ~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~ 220 (431)
+..+.-|..-+ +|-..+.+.++.+.++
T Consensus 151 ~k~v~dltV~v----LdRpRH~~lI~eir~~ 177 (323)
T PRK12415 151 NKKIRDLTVIV----QERERHQDIIDRVRAK 177 (323)
T ss_pred CCCHHHCEEEE----EECCHHHHHHHHHHHC
T ss_conf 99865726999----7454579999999986
No 317
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=22.64 E-value=19 Score=16.26 Aligned_cols=16 Identities=19% Similarity=0.439 Sum_probs=11.8
Q ss_pred CCCCEEEECCCCCCCC
Q ss_conf 6652688068730002
Q gi|254780371|r 229 HNIQHIDVGGGLGIAY 244 (431)
Q Consensus 229 ~~~~~ldiGGGf~i~y 244 (431)
++++-|=||||||=-|
T Consensus 39 P~~d~lylgGGyPE~~ 54 (198)
T cd03130 39 PDADGLYLGGGYPELF 54 (198)
T ss_pred CCCCEEECCCCCHHHH
T ss_conf 9876898279987588
No 318
>pfam00224 PK Pyruvate kinase, barrel domain. This domain of the is actually a small beta-barrel domain nested within a larger TIM barrel. The active site is found in a cleft between the two domains.
Probab=22.32 E-value=52 Score=13.32 Aligned_cols=12 Identities=8% Similarity=-0.108 Sum_probs=5.0
Q ss_pred EEEEEEEECCCC
Q ss_conf 899981000566
Q gi|254780371|r 337 HADIVGPICETG 348 (431)
Q Consensus 337 ~~~i~G~~C~~~ 348 (431)
++-++-..++|+
T Consensus 276 pvivATqmLeSM 287 (348)
T pfam00224 276 PVITATQMLESM 287 (348)
T ss_pred CEEEECCCHHHH
T ss_conf 299982757765
No 319
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=22.31 E-value=52 Score=13.32 Aligned_cols=20 Identities=30% Similarity=0.375 Sum_probs=11.5
Q ss_pred ECCCCCEEEEEEEEECCCCC
Q ss_conf 20366325888764034689
Q gi|254780371|r 279 LVADVGILVTKVISIKKSAD 298 (431)
Q Consensus 279 lva~ag~ll~~V~~vK~~~~ 298 (431)
+.-+|.+++++|...|-+++
T Consensus 304 l~P~a~VlVaTvRALK~hGG 323 (524)
T cd00477 304 LKPDAVVLVATVRALKMHGG 323 (524)
T ss_pred CCCCEEEEEEEEHHHHHCCC
T ss_conf 99878999987357775489
No 320
>TIGR01743 purR_Bsub pur operon repressor; InterPro: IPR010078 This entry represents the pur operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.; GO: 0003677 DNA binding, 0016564 transcription repressor activity, 0016481 negative regulation of transcription, 0045982 negative regulation of purine base metabolic process.
Probab=22.31 E-value=52 Score=13.32 Aligned_cols=203 Identities=14% Similarity=0.275 Sum_probs=101.9
Q ss_pred CCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHH
Q ss_conf 11345777641563220023355641564420489999999988765310266652688068730002665455311456
Q gi|254780371|r 177 QIHSLYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDY 256 (431)
Q Consensus 177 ~~~~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~ 256 (431)
.+..+.+.+-+.|+ ++++|..+.--....-.....=+..+.++++++ +.|.-..+==-||| +.|.+.-...+.++|
T Consensus 6 Rlv~l~~~L~~nP~-kLi~L~~F~d~y~~AKSsiSEDi~I~~~~le~~-~~G~~~T~~GAaGG--v~YiP~~~~~~~~~f 81 (269)
T TIGR01743 6 RLVVLTKYLIENPN-KLISLNKFSDKYESAKSSISEDIVIIKEVLEKF-DIGKLETVPGAAGG--VKYIPEVSEKEAKEF 81 (269)
T ss_pred HHHHHHHHHHHCCE-EECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCC--EEEECCCCCHHHHHH
T ss_conf 57776777742780-102700578776421111014489999985006-88647861478897--058456460456889
Q ss_pred HHHHHHHHCCCCC----------EEEEEECCEECCCCCEEEEEEEEECCCCCCCCEEE-C-CCCCCCCCCHHHCC--CCC
Q ss_conf 5556542102453----------03441011120366325888764034689742200-5-53000110011102--465
Q gi|254780371|r 257 ASLIHQYFGNLQC----------KIILEPGRFLVADVGILVTKVISIKKSADKTFVIL-D-VAMNDFMRPTLYDA--YHE 322 (431)
Q Consensus 257 ~~~i~~~~~~~~~----------~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~v-D-~g~~~~~~p~~~~~--~~~ 322 (431)
.+.+++.+.+.+. -|+..| +++...|-+++++=.-|+. .++++ . =|+ |--|.. +.-
T Consensus 82 v~~l~~~l~~s~Ri~PGgflY~~Dll~~P--si~ski~~ila~~F~d~~I---D~V~TV~TKGv-----PLA~~~A~~Ln 151 (269)
T TIGR01743 82 VEELCEKLSESERILPGGFLYLTDLLFKP--SILSKIGKILASVFIDKEI---DAVMTVETKGV-----PLAYAVAKVLN 151 (269)
T ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHCCC--CHHHHHHHHHHHHCCCCCC---CEEEEEECCCH-----HHHHHHHHHCC
T ss_conf 99999862288840377475553454178--1577788887543268557---87899521882-----38989987649
Q ss_pred CCC-CCCCCC---CCCEEEEE-EEEEECCCCCEEEEEEECC--CCCCCCEEEEE----CCCCHHHHHH---CCCCCCCCC
Q ss_conf 322-223467---77615899-9810005666656210056--68888899996----7970233340---277889866
Q gi|254780371|r 323 INY-IVNPAG---DRLHIHAD-IVGPICETGDFIALNRKIA--LPRPGDLLYIE----KTGAYGAVQS---GTYNSRLLI 388 (431)
Q Consensus 323 i~~-~~~~~~---~~~~~~~~-i~G~~C~~~D~l~~~~~lp--~l~~GD~l~i~----~~GAY~~s~~---s~fn~~p~p 388 (431)
+.. ++.++. +.-+...+ |.|. +++.+-. ..|. .|+.|-.+.|- .+|.----|- ..|++.-.=
T Consensus 152 V~lvivRkD~kvTEGStVSiNYVSGs---sG~~I~~-M~LarrSLk~GS~vL~vDDFmkaGGT~~Gm~~LL~EFda~l~G 227 (269)
T TIGR01743 152 VPLVIVRKDSKVTEGSTVSINYVSGS---SGDRIQK-MSLARRSLKKGSKVLIVDDFMKAGGTVKGMIELLKEFDAELAG 227 (269)
T ss_pred CCEEEEECCCCEECCCEEEEEEEECC---CCHHHHH-HHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 61799984681210532899556768---7436788-8888888860890899953555487026788888762711023
Q ss_pred EEEEEECCE
Q ss_conf 599998896
Q gi|254780371|r 389 PEIMVNGSQ 397 (431)
Q Consensus 389 ~~v~v~~g~ 397 (431)
.-||+++.+
T Consensus 228 iGVli~~~~ 236 (269)
T TIGR01743 228 IGVLIDNEE 236 (269)
T ss_pred EEEEEECCC
T ss_conf 221332355
No 321
>pfam01884 PcrB PcrB family. This family contains proteins that are related to PcrB. The function of these proteins is unknown.
Probab=22.29 E-value=52 Score=13.32 Aligned_cols=76 Identities=22% Similarity=0.279 Sum_probs=29.0
Q ss_pred CCCEEEECCCCCCCCCCCCCC--CCHHHH---HHHHHHHHCCCCCEEEEEECCEECCCCCEEEEEEEEECCCCCCCCEEE
Q ss_conf 652688068730002665455--311456---555654210245303441011120366325888764034689742200
Q gi|254780371|r 230 NIQHIDVGGGLGIAYHSDHRP--PSSSDY---ASLIHQYFGNLQCKIILEPGRFLVADVGILVTKVISIKKSADKTFVIL 304 (431)
Q Consensus 230 ~~~~ldiGGGf~i~y~~~~~~--~~~~~~---~~~i~~~~~~~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~v 304 (431)
+.-||=+++|=.+.+..+-++ .+-.+. .....+.++. +-+.+|-|.---++.- ..|+..++.....-+++
T Consensus 113 p~gYivi~~g~~v~~vs~a~~i~~~~~~iaa~~alA~~~~g~--~~iYLEaGSGa~~~vp---~~vi~~~~~~~~~~Liv 187 (231)
T pfam01884 113 PMGYIVVEPDSKVGWVGEARPIPRNKPDIAAYYALAAKLLGM--RIFYLEAGSGAPGPVP---EEVIAVKKVLDDARLIV 187 (231)
T ss_pred EEEEEEECCCCCEEEEECCEECCCCCHHHHHHHHHHHHHCCC--CEEEEECCCCCCCCCC---HHHHHHHHCCCCCCEEE
T ss_conf 036788759971366436623799959999999999997098--1899975899999989---99999996468976899
Q ss_pred CCCCCC
Q ss_conf 553000
Q gi|254780371|r 305 DVAMND 310 (431)
Q Consensus 305 D~g~~~ 310 (431)
-||+..
T Consensus 188 GGGIrs 193 (231)
T pfam01884 188 GGGIKS 193 (231)
T ss_pred ECCCCC
T ss_conf 699799
No 322
>pfam02424 ApbE ApbE family. This prokaryotic family of lipoproteins are related to ApbE from Salmonella typhimurium. ApbE is involved in thiamine synthesis. More specifically is may be involved in the conversion of aminoimidazole ribotide (AIR) to 4-amino-5-hydroxymethyl-2-methyl pyrimidine (HMP).
Probab=22.24 E-value=44 Score=13.83 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=17.4
Q ss_pred EEEEEEEEEECCCCCEEEEEEEC
Q ss_conf 15899981000566665621005
Q gi|254780371|r 335 HIHADIVGPICETGDFIALNRKI 357 (431)
Q Consensus 335 ~~~~~i~G~~C~~~D~l~~~~~l 357 (431)
...++|..+.|...|.++....+
T Consensus 211 ~~svTVia~~~~~ADalATa~~v 233 (254)
T pfam02424 211 LASVTVIAPSAALADALATALFV 233 (254)
T ss_pred CEEEEEEECCHHHHHHHHHHHHH
T ss_conf 46999997986899999999993
No 323
>PRK05858 hypothetical protein; Provisional
Probab=22.22 E-value=53 Score=13.31 Aligned_cols=13 Identities=23% Similarity=0.424 Sum_probs=5.4
Q ss_pred EEEEECCCCHHHH
Q ss_conf 9999679702333
Q gi|254780371|r 365 LLYIEKTGAYGAV 377 (431)
Q Consensus 365 ~l~i~~~GAY~~s 377 (431)
.+++.|=|.|++.
T Consensus 456 ~ivV~NN~~yg~~ 468 (543)
T PRK05858 456 VSVIGNNGIWGLE 468 (543)
T ss_pred EEEEEECCHHHHH
T ss_conf 9999828625899
No 324
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=22.21 E-value=53 Score=13.31 Aligned_cols=58 Identities=17% Similarity=0.167 Sum_probs=28.4
Q ss_pred HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-----CCEEEEEECCEECC
Q ss_conf 9998876531026665268806873000266545531145655565421024-----53034410111203
Q gi|254780371|r 216 LLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQYFGNL-----QCKIILEPGRFLVA 281 (431)
Q Consensus 216 ~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~~~~~~-----~~~l~~EPGR~lva 281 (431)
.+.+..+.+++.|++---+|+==|+| ..+.+.|...|.+.+.-. -+.+.+|||..+..
T Consensus 136 ~~~~ai~~~~~~gf~niniDLIyGlP--------gQt~~~~~~~l~~~~~l~p~hiS~Y~L~i~~~t~~~~ 198 (374)
T PRK05799 136 EFLENYKLARKLGFNNINVDLMFGLP--------NQTLEDWKETLEKVVELSPEHISCYSLIIEEGTPFYN 198 (374)
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCC--------CCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHH
T ss_conf 99999999997599746688544898--------8878999999999984172501365420578867998
No 325
>PRK13517 carboxylate-amine ligase; Provisional
Probab=22.16 E-value=53 Score=13.30 Aligned_cols=32 Identities=28% Similarity=0.406 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 2200233556415644204899999999887653
Q gi|254780371|r 191 VKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQL 224 (431)
Q Consensus 191 l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l 224 (431)
..++|+|.|+| +.|.+.....+..+....--+
T Consensus 127 ~~i~G~HVHVg--v~d~e~av~v~n~lr~~lP~l 158 (371)
T PRK13517 127 QLICGVHVHVG--VPSREKAVPVLNRLRPWLPHL 158 (371)
T ss_pred HHHHEEEEEEC--CCCHHHHHHHHHHHHHHHHHH
T ss_conf 61402579834--798899999999999998999
No 326
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=22.15 E-value=53 Score=13.30 Aligned_cols=99 Identities=15% Similarity=0.251 Sum_probs=50.4
Q ss_pred EECCEEEE-----CCCCHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCC-------------C-EEEE--EEECCCC
Q ss_conf 66885898-----784299999974997899779999999999998614479-------------7-8999--6410799
Q gi|254780371|r 6 YFEGSLHA-----ENVSLEKLAHVVQTPFYCYSTTAIEKNYLTFSNAFDGMD-------------T-MVCY--ALKANSN 64 (431)
Q Consensus 6 ~~~~~l~i-----~~~~l~~La~~~gTP~yV~d~~~i~~n~~~l~~a~~~~~-------------~-~i~y--AvKaN~~ 64 (431)
|++.+..| -|.++.++..+.|-.+.++|...-.+...++.+.+++.. + .+.+ +++ +.
T Consensus 3 ~~~k~v~viGlG~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPgI~--~~ 80 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKAERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGIS--ER 80 (445)
T ss_pred CCCCEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCEEEECCCHHHHCCCCCEEEECCCCC--CC
T ss_conf 7999899999899999999999978991999979999531899974369968993786365015999999899538--99
Q ss_pred HHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCEEECCC-CCCC
Q ss_conf 9999999973992898689998652212578431244477-5420
Q gi|254780371|r 65 QAVIKTLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGV-GKTI 108 (431)
Q Consensus 65 ~~il~~l~~~G~g~dv~S~~El~~al~~G~~~~~Ii~~g~-~k~~ 108 (431)
-..++.+.+.|+ .+.|.-|+..-+...-...-|-.||+ +||.
T Consensus 81 ~p~l~~a~~~gi--~i~~~~el~~~~~~~~~~~~IaVTGTnGKTT 123 (445)
T PRK04308 81 QPDIEAFKQNGG--RVLGDIELLADIVNRRGDKVIAITGSNGKTT 123 (445)
T ss_pred CHHHHHHHHCCC--CEECHHHHHHHHHHCCCCCEEEEECCCCCHH
T ss_conf 999999997599--5715999999998416995799948998377
No 327
>pfam02310 B12-binding B12 binding domain. This domain binds to B12 (adenosylcobamide), it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase.
Probab=22.08 E-value=53 Score=13.29 Aligned_cols=50 Identities=12% Similarity=0.247 Sum_probs=22.3
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCC
Q ss_conf 45777641563220023355641564420489999999988765310266652688068730
Q gi|254780371|r 180 SLYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLG 241 (431)
Q Consensus 180 ~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~ 241 (431)
++.+.+++. .-+++|+++...++. ..+.++++.+++...++.++ +||..+
T Consensus 42 ~i~~~i~~~-~pdiVgiS~~~~~~~----------~~~~~l~~~ik~~~p~~~iv-~GG~~~ 91 (121)
T pfam02310 42 DIVEAIRAE-NPDVVGLSALMTTNL----------PAAKELARLLKRIRPGVKVV-VGGPHP 91 (121)
T ss_pred HHHHHHHHC-CCCEEEEECCCCCCC----------HHHHHHHHHHHHHCCCCEEE-EECCCC
T ss_conf 999999980-999999952321121----------13689999999859897599-838763
No 328
>pfam09370 TIM-br_sig_trns TIM-barrel signal transduction protein. This domain is likely to have a TIM barrel fold related to IGPS. Although this family of proteins are functionally uncharacterized this domain is found as an N-terminal domain of sigma 54 -dependent transcriptional activators (enhancer-binding proteins) suggesting a potential role in signal recognition/receiving and signal transduction.
Probab=22.02 E-value=32 Score=14.76 Aligned_cols=31 Identities=16% Similarity=0.350 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEECCCC
Q ss_conf 8999999998876531026665268806873
Q gi|254780371|r 210 FHKAFKLLRDLTQQLRSNGHNIQHIDVGGGL 240 (431)
Q Consensus 210 ~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf 240 (431)
..++++...++++..++...++-+|--||=+
T Consensus 194 l~~a~~~~~~i~~aa~~v~~diIvLchGGpI 224 (268)
T pfam09370 194 LDDCVELINAIARAARSVNPDVIVLCHGGPI 224 (268)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 9999999999999999859986999517888
No 329
>PRK09479 glpX fructose 1,6-bisphosphatase II; Reviewed
Probab=21.94 E-value=53 Score=13.27 Aligned_cols=28 Identities=11% Similarity=0.153 Sum_probs=14.2
Q ss_pred CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 63220023355641564420489999999988
Q gi|254780371|r 189 PGVKISGVDMHIGSQIDQIESFHKAFKLLRDL 220 (431)
Q Consensus 189 ~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~ 220 (431)
.+..+.-|..-+ +|-..+.+.++.+.+.
T Consensus 150 ~~k~v~dltV~v----LdRpRH~~lI~eir~~ 177 (320)
T PRK09479 150 LGKDVSDLTVVV----LDRPRHAELIAEIREA 177 (320)
T ss_pred CCCCHHHCEEEE----EECCHHHHHHHHHHHC
T ss_conf 099966828999----8662679999999973
No 330
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=21.65 E-value=54 Score=13.23 Aligned_cols=37 Identities=11% Similarity=0.236 Sum_probs=18.9
Q ss_pred CEEEEECCCCHHHHHH-----CCCCCCCCCEEEEE-ECCEEEEEEE
Q ss_conf 8999967970233340-----27788986659999-8896899982
Q gi|254780371|r 364 DLLYIEKTGAYGAVQS-----GTYNSRLLIPEIMV-NGSQFHIIRP 403 (431)
Q Consensus 364 D~l~i~~~GAY~~s~~-----s~fn~~p~p~~v~v-~~g~~~~ir~ 403 (431)
..++|..=|++.|+.. .+++ .|..++| +|+....||.
T Consensus 441 ~Vv~i~GDGsf~m~~qEL~Tavr~~---lpv~iiV~NN~~yg~i~~ 483 (572)
T PRK08979 441 TVVCVTGDGSIQMNIQELSTALQYD---IPVKIINLNNRFLGMVKQ 483 (572)
T ss_pred CEEEEECCHHHHHHHHHHHHHHHHC---CCCEEEEEECCCHHHHHH
T ss_conf 6899988279877799999999978---894899997970059999
No 331
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=21.64 E-value=54 Score=13.23 Aligned_cols=53 Identities=17% Similarity=0.080 Sum_probs=25.2
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCC
Q ss_conf 4577764156322002335564156442048999999998876531026665268806873000
Q gi|254780371|r 180 SLYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIA 243 (431)
Q Consensus 180 ~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~ 243 (431)
++++.+.+. ..++.|++...|.... .+..+.+.+++.|..=-.+=+||+.+++
T Consensus 41 ~~~~~a~e~-~ad~i~vSsl~g~~~~----------~~~~l~~~L~e~G~~di~vvvGG~i~i~ 93 (128)
T cd02072 41 EFIDAAIET-DADAILVSSLYGHGEI----------DCKGLREKCDEAGLKDILLYVGGNLVVG 93 (128)
T ss_pred HHHHHHHHC-CCCEEEECCCCCCCCH----------HHHHHHHHHHHCCCCCCEEEECCCCCCC
T ss_conf 999999873-9999998232025624----------8999999999679999989978986778
No 332
>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e. P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.
Probab=21.32 E-value=55 Score=13.19 Aligned_cols=53 Identities=15% Similarity=0.273 Sum_probs=35.6
Q ss_pred CHHHHHHHCCCCEEEEEHHHHH-HHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCC
Q ss_conf 2999999749978997799999-9999999861447978999641079999999999739
Q gi|254780371|r 17 SLEKLAHVVQTPFYCYSTTAIE-KNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLG 75 (431)
Q Consensus 17 ~l~~La~~~gTP~yV~d~~~i~-~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G 75 (431)
.+.++.++|.+ +||++.+-++ .+++.+|+.|.+ +.++++. .+.-+-+.+.+.+
T Consensus 9 ~l~~~l~~y~~-v~iv~~~n~~s~qlq~iR~~lr~-~~~~~~g----Kn~lm~~Al~~~~ 62 (175)
T cd05795 9 KLTELLKSYPK-VLIVDADNVGSKQLQKIRRSLRG-KAEILMG----KNTLIRRALRNLG 62 (175)
T ss_pred HHHHHHHHCCE-EEEEEECCCCHHHHHHHHHHHHC-CEEEEEE----HHHHHHHHHHHCC
T ss_conf 99999865998-99999468871999999998227-8189984----4589999998622
No 333
>pfam04413 Glycos_transf_N 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase). Members of this family transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Members of the family transfer UDP, ADP, GDP or CMP linked sugars. The Glycos_transf_N region is flanked at the N-terminus by a signal peptide and at the C-terminus by Glycos_transf_1 (pfam00534). The eukaryotic glycogen synthases may be distant members of this bacterial family.
Probab=21.30 E-value=55 Score=13.19 Aligned_cols=61 Identities=21% Similarity=0.240 Sum_probs=35.1
Q ss_pred CCEEEECHHHHHHHHH------CCCCCCCEEECCCCCCCHHH-HHHHHCCCC--CCCCCCCHHHHHHHHH
Q ss_conf 9289868999865221------25784312444775420124-444206872--3333220246768774
Q gi|254780371|r 76 SGLDIVSEGELRRALA------APVPAERIVFSGVGKTIDEI-DLALQSGIY--CFNVESESELKTLNQR 136 (431)
Q Consensus 76 ~g~dv~S~~El~~al~------~G~~~~~Ii~~g~~k~~~~l-~~ai~~gv~--~i~vDs~~el~~l~~~ 136 (431)
.-+.|+|.||+..+.. .-.+..+|+.|..-.+-.++ .......+. .+-+|...-++++...
T Consensus 24 IWiHaaSvGE~~~~~~li~~l~~~~p~~~iliT~~T~sg~~~~~~~~~~~~~~~ylP~D~~~~~~~fl~~ 93 (186)
T pfam04413 24 IWLHAASVGEVLAALPLIEALKARYPGLRILVTTTTPTGAELARKLLPDRVIHQYLPLDLPGAVRRFLKH 93 (186)
T ss_pred EEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHH
T ss_conf 9998398899999999999999868996299983581699999986789807997776777999999998
No 334
>TIGR00787 dctP TRAP transporter solute receptor, DctP family; InterPro: IPR004682 TRAP-T family proteins generally consist of three components, and these systems have so far been found in Gram-negative bacteria, Gram-positive bacteria and archaea. Only one member of the family has been both sequenced and functionally characterised. This system is the DctPQM system of Rhodobacter capsulatus. DctP is a periplasmic dicarboxylate (malate, fumarate, succinate) binding receptor that is biochemically well-characterised.; GO: 0006810 transport, 0030288 outer membrane-bounded periplasmic space.
Probab=21.28 E-value=55 Score=13.18 Aligned_cols=32 Identities=16% Similarity=0.191 Sum_probs=14.9
Q ss_pred CCCHHHHHHHHHCCCCEEEECHHHHHHHHHCC
Q ss_conf 79999999999739928986899986522125
Q gi|254780371|r 62 NSNQAVIKTLAHLGSGLDIVSEGELRRALAAP 93 (431)
Q Consensus 62 N~~~~il~~l~~~G~g~dv~S~~El~~al~~G 93 (431)
++++-.+..+...|+.=+..|-+|++.||+.|
T Consensus 148 ~~s~~~~~~~~~lGA~P~~~~F~EvY~ALq~g 179 (267)
T TIGR00787 148 PASPVLEAQFKALGANPEPMAFSEVYTALQTG 179 (267)
T ss_pred CCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCC
T ss_conf 98689999999708998412658999987548
No 335
>TIGR02708 L_lactate_ox L-lactate oxidase; InterPro: IPR014080 Members of this entry oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence..
Probab=21.25 E-value=55 Score=13.18 Aligned_cols=63 Identities=17% Similarity=0.226 Sum_probs=36.5
Q ss_pred EECCCCHHHHHHHCCCC----EEEE----EHHHHHHHHHHHHHHC--C-------CCCCEEEEEEECCCCHHHHHHHHHC
Q ss_conf 98784299999974997----8997----7999999999999861--4-------4797899964107999999999973
Q gi|254780371|r 12 HAENVSLEKLAHVVQTP----FYCY----STTAIEKNYLTFSNAF--D-------GMDTMVCYALKANSNQAVIKTLAHL 74 (431)
Q Consensus 12 ~i~~~~l~~La~~~gTP----~yV~----d~~~i~~n~~~l~~a~--~-------~~~~~i~yAvKaN~~~~il~~l~~~ 74 (431)
.|.-.||++.|++. -| =||= |.=++++|+|.|+.-| | .+.+.+-+.=.--..|-|+.-++.+
T Consensus 13 ~iN~yDLE~~A~~V-iP~gaF~YIA~~agD~fT~r~N~Raf~HKL~~P~~~~~VE~P~T~~~~~G~~l~~P~I~APvAAH 91 (368)
T TIGR02708 13 FINTYDLEEMAQQV-IPKGAFGYIASGAGDTFTLRENIRAFNHKLIVPHLLQDVENPSTEIEFLGEKLKSPLIMAPVAAH 91 (368)
T ss_pred EEECCCCHHHHHHC-CCCCCCCCCCCCCCCCHHHHHCCHHHCCCCCCCHHHCCCCCCCCEEEECCCEECCCEEECCHHHH
T ss_conf 68513412444312-67643433013666512244310223242013523304678873167626410486044115764
Q ss_pred C
Q ss_conf 9
Q gi|254780371|r 75 G 75 (431)
Q Consensus 75 G 75 (431)
+
T Consensus 92 ~ 92 (368)
T TIGR02708 92 K 92 (368)
T ss_pred H
T ss_conf 3
No 336
>PRK10864 putative methyltransferase; Provisional
Probab=21.22 E-value=55 Score=13.18 Aligned_cols=12 Identities=8% Similarity=0.158 Sum_probs=6.9
Q ss_pred CCCCHHHHHHHH
Q ss_conf 632200233556
Q gi|254780371|r 189 PGVKISGVDMHI 200 (431)
Q Consensus 189 ~~l~l~GlH~H~ 200 (431)
+-.++.|.|.-.
T Consensus 109 ee~~vyG~nA~~ 120 (348)
T PRK10864 109 EETRVYGENACQ 120 (348)
T ss_pred HHHHHHHHHHHH
T ss_conf 343102278999
No 337
>pfam01973 MAF_flag10 Protein of unknown function DUF115. This family of archaebacterial proteins has no known function.
Probab=21.20 E-value=55 Score=13.17 Aligned_cols=19 Identities=11% Similarity=0.231 Sum_probs=6.4
Q ss_pred CCEEEEEH-HHHHHHHHHHH
Q ss_conf 97899779-99999999999
Q gi|254780371|r 27 TPFYCYST-TAIEKNYLTFS 45 (431)
Q Consensus 27 TP~yV~d~-~~i~~n~~~l~ 45 (431)
.|++|.-. ..|++++..++
T Consensus 25 ~~~~IvgaGPSL~~~i~~Lk 44 (169)
T pfam01973 25 KPAIIVGAGPSLDKHLPLLK 44 (169)
T ss_pred CEEEEECCCCCHHHHHHHHH
T ss_conf 71999956899899999999
No 338
>PRK09372 ribonuclease activity regulator protein RraA; Provisional
Probab=21.19 E-value=43 Score=13.90 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=6.4
Q ss_pred EEEEEEEECCCCCEEE
Q ss_conf 8999810005666656
Q gi|254780371|r 337 HADIVGPICETGDFIA 352 (431)
Q Consensus 337 ~~~i~G~~C~~~D~l~ 352 (431)
+..+.|-+..++|++.
T Consensus 130 pi~~gGv~V~pGD~i~ 145 (160)
T PRK09372 130 PVNFGGVTFFPGDYLY 145 (160)
T ss_pred EEEECCEEECCCCEEE
T ss_conf 1897989988999999
No 339
>PRK08392 hypothetical protein; Provisional
Probab=21.13 E-value=55 Score=13.16 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=8.3
Q ss_pred HHCCCCCHHHHHHHHH
Q ss_conf 4156322002335564
Q gi|254780371|r 186 STLPGVKISGVDMHIG 201 (431)
Q Consensus 186 ~~~~~l~l~GlH~H~G 201 (431)
+++ ..-+.++|-..|
T Consensus 84 ~~l-D~vIasvH~~~~ 98 (215)
T PRK08392 84 KKL-DYVIASVHEWFG 98 (215)
T ss_pred HHC-CEEEEEEEECCC
T ss_conf 869-979999873788
No 340
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=21.06 E-value=35 Score=14.48 Aligned_cols=21 Identities=14% Similarity=0.311 Sum_probs=12.3
Q ss_pred CCCHHHHHHHHHCCC-CEEEEC
Q ss_conf 799999999997399-289868
Q gi|254780371|r 62 NSNQAVIKTLAHLGS-GLDIVS 82 (431)
Q Consensus 62 N~~~~il~~l~~~G~-g~dv~S 82 (431)
-+...+++...+.|. |+|..+
T Consensus 91 ~~~~~l~~~~~~~gl~GlE~l~ 112 (291)
T COG0812 91 APWHDLVRFALENGLSGLEFLA 112 (291)
T ss_pred CCHHHHHHHHHHCCCCHHHHHC
T ss_conf 9679999999975972147661
No 341
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=21.03 E-value=56 Score=13.15 Aligned_cols=187 Identities=18% Similarity=0.205 Sum_probs=81.2
Q ss_pred EHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCC-CCCEEECCCCCCCHHH
Q ss_conf 799999999999986144797899964107999999999973992898689998652212578-4312444775420124
Q gi|254780371|r 33 STTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEGELRRALAAPVP-AERIVFSGVGKTIDEI 111 (431)
Q Consensus 33 d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~S~~El~~al~~G~~-~~~Ii~~g~~k~~~~l 111 (431)
|.+.-.+++++|.++= .+ .++.++-.--...-++.+.+. ..+| -.+|.|+ ...+
T Consensus 34 Dv~aTv~QI~~L~~aG--~d-IVRvtv~~~e~A~A~~~Ik~~-----------------~~vPLVaDiHf~-----~rla 88 (361)
T COG0821 34 DVEATVAQIKALERAG--CD-IVRVTVPDMEAAEALKEIKQR-----------------LNVPLVADIHFD-----YRLA 88 (361)
T ss_pred CHHHHHHHHHHHHHCC--CC-EEEEECCCHHHHHHHHHHHHH-----------------CCCCEEEEEECC-----HHHH
T ss_conf 1799999999999818--97-899936997899999999984-----------------799879873056-----8999
Q ss_pred HHHHHCCCC--CC---CCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 444206872--33---3322024676877411334421589987237786744333223344456887111134577764
Q gi|254780371|r 112 DLALQSGIY--CF---NVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYAS 186 (431)
Q Consensus 112 ~~ai~~gv~--~i---~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~~ 186 (431)
..+.++|+. .| |+-+.+.+..+.+.|++.++++||++ .+|+-++ ....|+|-+.-| .+++.+-
T Consensus 89 ~~~~~~g~~k~RINPGNig~~~~v~~vVe~Ak~~g~piRIGV------N~GSLek----~~~~ky~~pt~e--alveSAl 156 (361)
T COG0821 89 LEAAECGVDKVRINPGNIGFKDRVREVVEAAKDKGIPIRIGV------NAGSLEK----RLLEKYGGPTPE--ALVESAL 156 (361)
T ss_pred HHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEC------CCCCHHH----HHHHHHCCCCHH--HHHHHHH
T ss_conf 975642742698778656736779999999997599879952------6686169----999985479878--9999999
Q ss_pred HC-CCCCHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 15-63220023355641-56442048999999998876531026665268806873000266545531145655565421
Q gi|254780371|r 187 TL-PGVKISGVDMHIGS-QIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQYF 264 (431)
Q Consensus 187 ~~-~~l~l~GlH~H~GS-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~~~ 264 (431)
.+ .-++-.|++=.+=| ...++....++.+.+++ +. ++-+++-+-.-|+|+. ..--+--.++..+.+-+
T Consensus 157 ~~a~~~e~l~f~~i~iS~K~Sdv~~~v~aYr~lA~---~~-dyPLHLGvTEAG~~~~------G~VkSa~alg~LL~eGI 226 (361)
T COG0821 157 EHAELLEELGFDDIKVSVKASDVQLMVAAYRLLAK---RC-DYPLHLGVTEAGMGFK------GIVKSAAALGALLSEGI 226 (361)
T ss_pred HHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHH---HC-CCCCCCCEECCCCCCC------CEEHHHHHHHHHHHHCC
T ss_conf 99999997799867999873878999999999998---66-8772014103567645------00077899999997257
Q ss_pred CC
Q ss_conf 02
Q gi|254780371|r 265 GN 266 (431)
Q Consensus 265 ~~ 266 (431)
++
T Consensus 227 GD 228 (361)
T COG0821 227 GD 228 (361)
T ss_pred CC
T ss_conf 76
No 342
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=20.95 E-value=56 Score=13.14 Aligned_cols=35 Identities=11% Similarity=0.063 Sum_probs=14.7
Q ss_pred CCCCEEECCCCCCCHHHH-HHHHCCCCCCCCCCCHH
Q ss_conf 843124447754201244-44206872333322024
Q gi|254780371|r 95 PAERIVFSGVGKTIDEID-LALQSGIYCFNVESESE 129 (431)
Q Consensus 95 ~~~~Ii~~g~~k~~~~l~-~ai~~gv~~i~vDs~~e 129 (431)
++.+++|+....-..... .++..|-..+.+|+..=
T Consensus 128 ~~~~v~~~~~~~~~~g~~m~~~~rg~y~v~i~p~~f 163 (524)
T COG4943 128 DGVRVYYYRDTPLFIGYKMTYMGRGNYVVVIDPLSF 163 (524)
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCE
T ss_conf 983799955776677775110256855899645002
No 343
>TIGR01430 aden_deam adenosine deaminase; InterPro: IPR006330 This family includes the experimentally verified adenosine deaminases of mammals and Escherichia coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase. ; GO: 0004000 adenosine deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process.
Probab=20.81 E-value=56 Score=13.12 Aligned_cols=72 Identities=18% Similarity=0.261 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHCC-CCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH--HCCCCCHHHHHHHHH-
Q ss_conf 20246768774113-34421589987237786744333223344456887111134577764--156322002335564-
Q gi|254780371|r 126 SESELKTLNQRAVS-LGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYAS--TLPGVKISGVDMHIG- 201 (431)
Q Consensus 126 s~~el~~l~~~a~~-~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~~--~~~~l~l~GlH~H~G- 201 (431)
+.+..+++.+.|.+ .+...=|++=+ + + .+..++-.+....++.+.++ +. ||+++ +|-|
T Consensus 150 ~~~~~~~~~~~a~~~~~~~~ivg~gL----a--g--------dE~~~ps~~~~F~~~f~~Arsl~~-Gl~~T---~HAGl 211 (346)
T TIGR01430 150 QPEAAEETLELALPFYKEQGIVGFGL----A--G--------DERGGPSSPEKFVRAFAIARSLEL-GLKLT---VHAGL 211 (346)
T ss_pred CHHHHHHHHHHHHHHHCCCCEEEEEC----C--C--------CCCCCCCCHHHHHHHHHHHHHHHC-CCCEE---EECCC
T ss_conf 87899999999988634785689852----6--5--------466889887789999999876516-98356---30375
Q ss_pred HCCCCCHHHHHHHH
Q ss_conf 15644204899999
Q gi|254780371|r 202 SQIDQIESFHKAFK 215 (431)
Q Consensus 202 S~~~~~~~~~~~~~ 215 (431)
.....++...++++
T Consensus 212 hE~~g~~~v~~Ald 225 (346)
T TIGR01430 212 HELGGPESVREALD 225 (346)
T ss_pred CCCCCHHHHHHHHH
T ss_conf 34577467999998
No 344
>cd06530 S26_SPase_I The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are translocated across biological membranes. The bacterial signal peptidase I, which is the most intensively studied, has two N-terminal transmembrane segments inserted in the plasma membrane and a hydrophilic, C-terminal catalytic region that is located in the periplasmic space. Although the bacterial signal peptidase I is monomeric, signal peptidases of eukaryotic cells commonly function as oligomeric complexes containing two divergent copies of the catalytic monomer. These are the IMP1 and IMP2 signal peptidases of the mitochondrial inner membrane that remove leader peptides from nuclear- and mitochondrial-encoded proteins. Also, two components of the endoplasmic reticulum signal peptidase in mammals (18-kDa and 21-kDa
Probab=20.74 E-value=56 Score=13.11 Aligned_cols=31 Identities=26% Similarity=0.596 Sum_probs=18.6
Q ss_pred EECCCCCEEEEEEEC---CCCCCCCEEEEECCCC
Q ss_conf 000566665621005---6688888999967970
Q gi|254780371|r 343 PICETGDFIALNRKI---ALPRPGDLLYIEKTGA 373 (431)
Q Consensus 343 ~~C~~~D~l~~~~~l---p~l~~GD~l~i~~~GA 373 (431)
|+..++|++--...- ..++.||+++|..-+-
T Consensus 12 Pt~~~Gd~v~v~~~~~~~~~~~~GDivv~~~p~~ 45 (85)
T cd06530 12 PTLQPGDLVLVNKLSYGFREPKRGDVVVFKSPGD 45 (85)
T ss_pred CCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCC
T ss_conf 6030898999996135657777786999967999
No 345
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=20.73 E-value=56 Score=13.11 Aligned_cols=13 Identities=23% Similarity=0.452 Sum_probs=7.0
Q ss_pred EEEEECCCCHHHH
Q ss_conf 9999679702333
Q gi|254780371|r 365 LLYIEKTGAYGAV 377 (431)
Q Consensus 365 ~l~i~~~GAY~~s 377 (431)
.++|..=|++.|+
T Consensus 451 VV~i~GDG~f~m~ 463 (579)
T TIGR03457 451 VVAYAGDGAWGMS 463 (579)
T ss_pred EEEEECCHHHHHH
T ss_conf 8999883787252
No 346
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=20.70 E-value=56 Score=13.10 Aligned_cols=73 Identities=18% Similarity=0.119 Sum_probs=47.3
Q ss_pred CCCHHHHHHHHHCCCCEEE-------ECHHHHHHH----HHCCCCCCCEEECCCCCCCHHHHHHHHCCCCCC---CCCCC
Q ss_conf 7999999999973992898-------689998652----212578431244477542012444420687233---33220
Q gi|254780371|r 62 NSNQAVIKTLAHLGSGLDI-------VSEGELRRA----LAAPVPAERIVFSGVGKTIDEIDLALQSGIYCF---NVESE 127 (431)
Q Consensus 62 N~~~~il~~l~~~G~g~dv-------~S~~El~~a----l~~G~~~~~Ii~~g~~k~~~~l~~ai~~gv~~i---~vDs~ 127 (431)
.++|.+.+.+...|+-+-+ .+..++... ...|..+ ++ --|.-++..+..+++.|+.-| .|+|.
T Consensus 27 ~~sp~~~Ei~a~~G~Dfv~iD~EHg~~~~~~l~~~i~a~~~~~~~~--lV-Rvp~~~~~~i~r~LD~Ga~GvivP~V~s~ 103 (256)
T PRK10558 27 LSNPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAP--VV-RVPTNEPVIIKRLLDIGFYNFLIPFVETA 103 (256)
T ss_pred CCCHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCC--EE-ECCCCCHHHHHHHHCCCCCEEEECCCCCH
T ss_conf 8998999999728989999837789999999999999997179974--89-67889889999997079875561476999
Q ss_pred HHHHHHHHHH
Q ss_conf 2467687741
Q gi|254780371|r 128 SELKTLNQRA 137 (431)
Q Consensus 128 ~el~~l~~~a 137 (431)
+|.+.+.+.+
T Consensus 104 eea~~~V~a~ 113 (256)
T PRK10558 104 EEARRAVAST 113 (256)
T ss_pred HHHHHHHHHE
T ss_conf 9999999874
No 347
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=20.67 E-value=56 Score=13.10 Aligned_cols=17 Identities=18% Similarity=0.174 Sum_probs=9.0
Q ss_pred CCCCCHHHHHHHHHHHH
Q ss_conf 56442048999999998
Q gi|254780371|r 203 QIDQIESFHKAFKLLRD 219 (431)
Q Consensus 203 ~~~~~~~~~~~~~~~~~ 219 (431)
.+.+++.+..+++++++
T Consensus 148 ~V~~~~el~~al~~Ala 164 (196)
T cd02013 148 TVDKPEDVGPALQKAIA 164 (196)
T ss_pred EECCHHHHHHHHHHHHH
T ss_conf 97899999999999998
No 348
>COG1948 MUS81 ERCC4-type nuclease [DNA replication, recombination, and repair]
Probab=20.53 E-value=56 Score=13.15 Aligned_cols=54 Identities=20% Similarity=0.316 Sum_probs=25.2
Q ss_pred HHHHHHHHCCCCEEEECHHHHHHHHHCC---CCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 9999999739928986899986522125---784312444775420124444206872333322024676877
Q gi|254780371|r 66 AVIKTLAHLGSGLDIVSEGELRRALAAP---VPAERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQ 135 (431)
Q Consensus 66 ~il~~l~~~G~g~dv~S~~El~~al~~G---~~~~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~ 135 (431)
.+.+.|...|+.++... |.+| +.+ +++. -=|+-+++..-+..| +. .+|..++..
T Consensus 40 ~v~~~L~~~gv~v~~~~-------LevGDYvvs~-~v~V--ERKs~~Dfv~Si~dg-Rl-----feQ~~rL~~ 96 (254)
T COG1948 40 EVPRLLKRLGVKVEVRT-------LEVGDYVVSD-DVIV--ERKSISDFVSSIIDG-RL-----FEQAKRLKK 96 (254)
T ss_pred CCHHHHHHCCCEEEEEE-------CCCCCEEEEC-CEEE--EECCHHHHHHHHHCC-HH-----HHHHHHHHH
T ss_conf 11599985797489875-------0303679526-7268--845389899998613-59-----999999986
No 349
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases; InterPro: IPR010031 This entry identifies a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesising ascorbic acid or a derivative. These include L-gulonolactone oxidase (1.1.3.8 from EC) from rat and D-arabinono-1,4-lactone oxidase (1.1.3.37 from EC) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by IPR006093 from INTERPRO.; GO: 0016899 oxidoreductase activity acting on the CH-OH group of donors oxygen as acceptor, 0009058 biosynthetic process.
Probab=20.32 E-value=57 Score=13.05 Aligned_cols=66 Identities=15% Similarity=0.277 Sum_probs=28.3
Q ss_pred CHHHHHHHH-HCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHH--HCCCCCCEEEEEEE
Q ss_conf 899986522-1257843124447754201244442068723333220246768774--11334421589987
Q gi|254780371|r 82 SEGELRRAL-AAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQR--AVSLGKKAPIAFRV 150 (431)
Q Consensus 82 S~~El~~al-~~G~~~~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~--a~~~~~~~~I~lRi 150 (431)
|..|++-.+ .|--..++|..-|.+-||.+| ++-.|- .|++|-++-+..+.+. ......++.-|||+
T Consensus 23 s~eevrE~l~~Ar~~~Kk~~vVG~GHSPSdi--~cTdg~-l~~ldkmnkV~~fd~~Pelh~~~iTV~AGirl 91 (505)
T TIGR01678 23 SVEEVREVLADAREAEKKVKVVGAGHSPSDI--VCTDGF-LVSLDKMNKVLKFDKEPELHKKDITVEAGIRL 91 (505)
T ss_pred CHHHHHHHHHHHHHCCCEEEEECCCCCCCCC--EECCCH-HEECCCCCCEEEECCCCCCCCCCEEHHHHHHH
T ss_conf 2999999999987469838997577782321--542602-10012245101552786632201116552568
No 350
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=20.28 E-value=58 Score=13.04 Aligned_cols=18 Identities=6% Similarity=-0.117 Sum_probs=9.2
Q ss_pred EEEEEHHHHHHHHHHHHH
Q ss_conf 899779999999999998
Q gi|254780371|r 29 FYCYSTTAIEKNYLTFSN 46 (431)
Q Consensus 29 ~yV~d~~~i~~n~~~l~~ 46 (431)
|.|++.+.++.-++.-.+
T Consensus 23 fNv~n~e~~~avi~AAee 40 (293)
T PRK07315 23 FNTNNLEWTQAILRAAEA 40 (293)
T ss_pred EEECCHHHHHHHHHHHHH
T ss_conf 787999999999999999
No 351
>PRK01060 endonuclease IV; Provisional
Probab=20.19 E-value=58 Score=13.03 Aligned_cols=24 Identities=8% Similarity=0.177 Sum_probs=14.8
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 233444568871111345777641
Q gi|254780371|r 164 TGKKEDKFGIPIHQIHSLYAYAST 187 (431)
Q Consensus 164 tg~~~sKFGi~~~~~~~~~~~~~~ 187 (431)
|++..+..|-+.+++..++..+..
T Consensus 147 ~AGqG~~lG~~~eeL~~ii~~v~~ 170 (281)
T PRK01060 147 TAGQGSELGRRFEELARIIDGVED 170 (281)
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 489998268789999999996268
No 352
>PRK08999 hypothetical protein; Provisional
Probab=20.18 E-value=58 Score=13.03 Aligned_cols=32 Identities=19% Similarity=0.191 Sum_probs=19.6
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 65268806873000266545531145655565
Q gi|254780371|r 230 NIQHIDVGGGLGIAYHSDHRPPSSSDYASLIH 261 (431)
Q Consensus 230 ~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~ 261 (431)
.++++-+|-=|+.+-+++..+..|+.|.+..+
T Consensus 246 g~Dyi~lsPV~~T~shp~~~~lGw~~f~~l~~ 277 (312)
T PRK08999 246 GVDFAVLSPVQPTASHPGAPPLGWDGFAALIA 277 (312)
T ss_pred CCCEEEECCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 89969981544647899999678999999997
No 353
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=20.09 E-value=58 Score=13.02 Aligned_cols=98 Identities=14% Similarity=0.218 Sum_probs=44.1
Q ss_pred CCCCHHHHHHHCCCCEEEEEHHHHHHHHHHHHH-------------HCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEE
Q ss_conf 784299999974997899779999999999998-------------6144797899964107999999999973992898
Q gi|254780371|r 14 ENVSLEKLAHVVQTPFYCYSTTAIEKNYLTFSN-------------AFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDI 80 (431)
Q Consensus 14 ~~~~l~~La~~~gTP~yV~d~~~i~~n~~~l~~-------------a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv 80 (431)
.|.++.++..+.|-.+.++|.+.-.. ...++. .+...+. +..+==-.++..+++.+.+.| +.+
T Consensus 28 SG~s~a~~L~~~G~~v~~~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~-vV~SPGI~~~~p~l~~a~~~g--i~v 103 (476)
T PRK00141 28 SGLGIAKMLSELGCDVVVADDNETQR-HMLIEVVDVADISTAQASDALDSYSI-VVTSPGWRPDSPLLVDAQSAG--LEV 103 (476)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCHH-HHHHHHCCCCEECCCCHHHHHCCCCE-EEECCCCCCCCHHHHHHHHCC--CCE
T ss_conf 89999999997899799998998703-57887479856515530656468999-998997899799999999879--957
Q ss_pred ECHHHHHH-HHHCCC--CCCC-EEECCC-CCCC--HHHHHHH
Q ss_conf 68999865-221257--8431-244477-5420--1244442
Q gi|254780371|r 81 VSEGELRR-ALAAPV--PAER-IVFSGV-GKTI--DEIDLAL 115 (431)
Q Consensus 81 ~S~~El~~-al~~G~--~~~~-Ii~~g~-~k~~--~~l~~ai 115 (431)
.|.-|+.. ..++.. ++.+ |-.||+ +||. ..+...+
T Consensus 104 iseiel~~~~~~~~~~~~~~~~IaVTGTnGKTTTtsli~~iL 145 (476)
T PRK00141 104 IGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMM 145 (476)
T ss_pred EEHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHH
T ss_conf 719999998611643367776388968996798999999999
No 354
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=20.02 E-value=58 Score=13.01 Aligned_cols=12 Identities=8% Similarity=0.265 Sum_probs=6.3
Q ss_pred CHHHHHHHCCCC
Q ss_conf 299999974997
Q gi|254780371|r 17 SLEKLAHVVQTP 28 (431)
Q Consensus 17 ~l~~La~~~gTP 28 (431)
....|.++|+.|
T Consensus 18 ~~~~ll~~fa~~ 29 (219)
T PRK09552 18 NIISIMEKFAPP 29 (219)
T ss_pred HHHHHHHHHCHH
T ss_conf 389999985929
Done!