HHsearch results for GI: 254780371 and protein with PDBid: 3n2b_A
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae}
Probab=100.00 E-value=0 Score=782.55 Aligned_cols=415 Identities=43% Similarity=0.738 Sum_probs=392.4
Q ss_pred CCCCEEE-CCEEEECCCCHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEE
Q ss_conf 9871666-885898784299999974997899779999999999998614479789996410799999999997399289
Q gi|254780371|r 1 MSAFKYF-EGSLHAENVSLEKLAHVVQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLD 79 (431)
Q Consensus 1 m~~~~~~-~~~l~i~~~~l~~La~~~gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~d 79 (431)
|+.|+|+ ||+|++||++|.+||++|||||||||++.|++|+++|+++|+..+.+++||+|||+++.|++++++.|+|+|
T Consensus 25 m~~~~~~~~g~l~~~~v~l~~la~~~gTP~yvyd~~~i~~~~~~l~~a~~~~~~~i~YAvKaN~~~~vl~~l~~~G~G~D 104 (441)
T 3n2b_A 25 MDYFNYQEDGQLWAEQVPLADLANQYGTPLYVYSRATLERHWHAFDKSVGDYPHLICYAVKANSNLGVLNTLARLGSGFD 104 (441)
T ss_dssp SCSEEECTTSSEEETTEEHHHHHHHHCSSEEEEEHHHHHHHHHHHHHHTTTSCEEEEEEGGGCCCHHHHHHHHHTTCEEE
T ss_pred CCCEEECCCCEEEECCCCHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCEEE
T ss_conf 67366878997999994199999966998899879999999999998760589989999613898999999998399389
Q ss_pred EECHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCC
Q ss_conf 86899986522125784312444775420124444206872333322024676877411334421589987237786744
Q gi|254780371|r 80 IVSEGELRRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTH 159 (431)
Q Consensus 80 v~S~~El~~al~~G~~~~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~ 159 (431)
|+|.+|+++|+++|+++++|+|+||+|+.++|+.|++.|+..+|+||++|+++|.+++++.+++++|+|||||+++.+++
T Consensus 105 v~S~~El~~al~aG~~~~~Iv~~g~~K~~~~l~~ai~~gi~~i~ids~~El~~i~~~a~~~~~~~~v~lRinp~~~~~~~ 184 (441)
T 3n2b_A 105 IVSVGELERVLAAGGDPSKVVFSGVGKTEAEMKRALQLKIKCFNVESEPELQRLNKVAGELGVKAPISLRINPDVDAKTH 184 (441)
T ss_dssp ESSHHHHHHHHHTTCCGGGEEECCTTCCHHHHHHHHHTTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEBCCCCCTTTC
T ss_pred EECHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCC
T ss_conf 86999999999739992104862667988999999862445434430779999998888619997699999258886666
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCC
Q ss_conf 33322334445688711113457776415632200233556415644204899999999887653102666526880687
Q gi|254780371|r 160 KKISTGKKEDKFGIPIHQIHSLYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGG 239 (431)
Q Consensus 160 ~~~~tg~~~sKFGi~~~~~~~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGG 239 (431)
.++++++..||||++.+++..+++.++..+++++.|||||+|||+.+.+.|.++++.+.++++++++.|+++++||+|||
T Consensus 185 ~~~~~~~~~skfGi~~~~~~~~~~~~~~~~~l~l~Glh~HiGSq~~~~~~~~~a~~~~~~~~~~l~~~g~~~~~ldiGGG 264 (441)
T 3n2b_A 185 PYISTGLRDNKFGITFDRAAQVYRLAHSLPNLDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAEGIHIRHLDVGGG 264 (441)
T ss_dssp HHHHHHHHTSSSSBCGGGHHHHHHHHHHCTTEEEEEEECCTTCSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCSC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 34156877676676578899999975104682699999516876345389999999999999999970997004663377
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEECCCCCEEEEEEEEECCCCCCCCEEECCCCCCCCCCHHHCC
Q ss_conf 30002665455311456555654210245303441011120366325888764034689742200553000110011102
Q gi|254780371|r 240 LGIAYHSDHRPPSSSDYASLIHQYFGNLQCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMNDFMRPTLYDA 319 (431)
Q Consensus 240 f~i~y~~~~~~~~~~~~~~~i~~~~~~~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~vD~g~~~~~~p~~~~~ 319 (431)
||++|..++.+.+...............+++|++|||||||++||+++|+|+++|++.+++|+++|+|+|++++|++|++
T Consensus 265 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~li~EPGR~lva~ag~lvt~V~~~K~~~~~~~vivD~g~~~~~~~~~~~~ 344 (441)
T 3n2b_A 265 LGVVYRDELPPQPSEYAKALLDRLERHRDLELIFEPGRAIAANAGVLVTKVEFLKHTEHKNFAIIDAAMNDLIRPALYQA 344 (441)
T ss_dssp CCEEC-----CEECHHHHHHHHHHTTTCCSEEEECCSHHHHGGGEEEEEEEEEEEEC--CEEEEESCCTTTCCC------
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCEECCCCEEEEEEEEEEECCCCEEEEEECCCCCCCCHHHHCC
T ss_conf 57677755662245666656555403667167207750033366179999999866398259999340110023666446
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCEEE
Q ss_conf 46532222346777615899981000566665621005668888899996797023334027788986659999889689
Q gi|254780371|r 320 YHEINYIVNPAGDRLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMVNGSQFH 399 (431)
Q Consensus 320 ~~~i~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~s~~s~fn~~p~p~~v~v~~g~~~ 399 (431)
+|++..... .+....+++|+||+|+++|+|++++.+| +++||+|+|.+||||+++|+||||++|+|++|+|++|+++
T Consensus 345 ~~~i~~~~~--~~~~~~~~~i~Gp~C~s~D~l~~~~~lp-l~~GD~lv~~~~GAY~~s~ssnfN~~p~p~~v~v~~~~~~ 421 (441)
T 3n2b_A 345 WQDIIPLRP--RQGEAQTYDLVGPVCETSDFLGKDRDLV-LQEGDLLAVRSSGAYGFTMSSNYNTRPRVAEVMVDGNKTY 421 (441)
T ss_dssp -CCEEESSC--CSSCCEEEEEECSSSSTTCEEEEEEEEC-CCTTCEEEESSCSSSSGGGCBCTTTCCCCEEEEEETTEEE
T ss_pred CCCEECCCC--CCCCCEEEEEEECCCCCCCEEEECCCCC-CCCCCEEEECCCCHHHHHHHCCCCCCCCCCEEEEECCEEE
T ss_conf 431232457--8899428999811757885993511168-9999999984947435656382338999858999999899
Q ss_pred EEEECCCHHHHHHCCCC-CH
Q ss_conf 99824898899730888-56
Q gi|254780371|r 400 IIRPRMTFQELIELDSI-PA 418 (431)
Q Consensus 400 ~ir~ret~ed~~~~~~~-p~ 418 (431)
+||||||+||++++|.+ |+
T Consensus 422 lir~re~~~dl~~~~~~~p~ 441 (441)
T 3n2b_A 422 LVRQREELSSLWALESVLPE 441 (441)
T ss_dssp EEECCCCGGGGGTTBCCCCC
T ss_pred EEECCCCHHHHHCCCCCCCC
T ss_conf 99789999999644788999