Query gi|254780371|ref|YP_003064784.1| diaminopimelate decarboxylase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 431
No_of_seqs 158 out of 3572
Neff 7.5
Searched_HMMs 23785
Date Mon May 30 10:25:04 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780371.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n2b_A Diaminopimelate decarbo 100.0 0 0 782.6 35.4 415 1-418 25-441 (441)
2 2p3e_A Diaminopimelate decarbo 100.0 0 0 743.3 37.4 410 2-415 9-418 (420)
3 1twi_A Diaminopimelate decarbo 100.0 0 0 727.6 37.2 416 2-420 5-433 (434)
4 2qgh_A Diaminopimelate decarbo 100.0 0 0 696.1 35.1 398 16-415 22-419 (425)
5 2o0t_A Diaminopimelate decarbo 100.0 0 0 695.7 31.9 413 7-421 22-456 (467)
6 2j66_A BTRK, decarboxylase; bu 100.0 0 0 692.2 33.6 411 11-423 1-425 (428)
7 1knw_A Diaminopimelate decarbo 100.0 0 0 669.1 29.1 397 8-419 7-423 (425)
8 2yxx_A Diaminopimelate decarbo 100.0 0 0 647.0 34.1 382 18-416 4-386 (386)
9 7odc_A Protein (ornithine deca 100.0 0 0 653.7 26.2 391 1-407 1-423 (424)
10 2oo0_A ODC, ornithine decarbox 100.0 0 0 644.4 25.8 386 11-412 23-438 (471)
11 3btn_A Antizyme inhibitor 1; T 100.0 0 0 646.0 23.0 386 10-414 13-428 (448)
12 1f3t_A ODC, ornithine decarbox 100.0 0 0 638.0 27.4 382 11-408 14-424 (425)
13 2plj_A Lysine/ornithine decarb 100.0 0 0 634.7 27.2 379 5-401 32-418 (419)
14 3n29_A Carboxynorspermidine de 100.0 0 0 634.4 25.6 391 1-414 15-418 (418)
15 3mt1_A Putative carboxynorsper 100.0 0 0 599.8 26.8 360 25-413 2-363 (365)
16 2nva_A Arginine decarboxylase, 100.0 0 0 585.3 29.2 363 18-393 5-372 (372)
17 3nzp_A Arginine decarboxylase; 100.0 0 0 541.7 30.6 421 3-425 13-575 (619)
18 3nzq_A ADC, biosynthetic argin 100.0 0 0 513.3 31.8 419 3-424 48-624 (666)
19 3n2o_A ADC, biosynthetic argin 100.0 0 0 506.2 31.3 422 3-427 27-610 (648)
20 3gwq_A D-serine deaminase; YP_ 99.9 2.9E-22 1.2E-26 169.9 22.4 340 21-402 40-423 (426)
21 3llx_A Predicted amino acid al 99.9 2E-20 8.3E-25 157.4 19.4 345 23-404 10-372 (376)
22 1vfs_A Alanine racemase; TIM-b 99.8 3E-16 1.3E-20 129.0 19.2 307 26-371 5-341 (386)
23 1xfc_A Alanine racemase; alpha 99.7 6.5E-15 2.7E-19 120.0 23.2 302 30-372 14-345 (384)
24 2vd8_A Alanine racemase; pyrid 99.7 2.3E-14 9.8E-19 116.2 26.0 333 30-401 14-384 (391)
25 3e5p_A Alanine racemase; ALR, 99.7 2.8E-14 1.2E-18 115.6 22.0 304 29-370 10-335 (371)
26 3oo2_A Alanine racemase 1; inf 99.7 1.5E-13 6.3E-18 110.7 25.7 335 24-402 7-381 (385)
27 1bd0_A Alanine racemase; isome 99.7 1.3E-13 5.3E-18 111.2 24.6 334 27-404 6-380 (388)
28 3kw3_A Alanine racemase; niaid 99.6 2E-14 8.6E-19 116.6 16.6 302 29-372 22-346 (376)
29 2dy3_A Alanine racemase; alpha 99.6 1.7E-13 7E-18 110.4 19.1 300 31-375 7-333 (361)
30 3co8_A Alanine racemase; prote 99.6 3.7E-13 1.5E-17 108.0 20.1 330 28-399 10-377 (380)
31 3hur_A Alanine racemase; struc 99.6 7.3E-13 3.1E-17 106.0 19.4 308 27-372 8-341 (395)
32 1rcq_A Catabolic alanine racem 99.5 2E-12 8.5E-17 103.0 17.7 300 29-372 5-326 (357)
33 2rjg_A Alanine racemase; alpha 99.5 1.4E-11 5.8E-16 97.3 18.5 302 27-372 23-348 (379)
34 1w8g_A YGGS, hypothetical UPF0 98.9 1.7E-07 7.1E-12 69.5 15.6 189 35-238 9-204 (234)
35 3cpg_A Uncharacterized protein 98.8 5.9E-07 2.5E-11 65.8 15.5 189 35-238 30-246 (282)
36 1ct5_A Protein (yeast hypothet 97.8 0.0017 7E-08 42.4 14.7 187 35-237 19-221 (256)
37 3ju2_A Uncharacterized protein 90.0 0.26 1.1E-05 27.5 3.8 108 178-289 48-158 (284)
38 1i60_A IOLI protein; beta barr 89.1 0.45 1.9E-05 25.9 4.5 94 177-275 47-143 (278)
39 3cqj_A L-ribulose-5-phosphate 84.6 1.6 6.6E-05 22.2 5.2 102 170-276 60-168 (295)
40 2qw5_A Xylose isomerase-like T 83.8 1.5 6.4E-05 22.3 4.9 53 176-229 65-123 (335)
41 3kru_A NADH:flavin oxidoreduct 83.7 2.2 9.2E-05 21.2 7.5 17 210-226 189-205 (343)
42 3hgj_A Chromate reductase; TIM 83.6 1.3 5.6E-05 22.7 4.5 14 212-225 200-213 (349)
43 2hk0_A D-psicose 3-epimerase; 82.0 2.3 9.7E-05 21.1 5.2 15 261-275 157-171 (309)
44 1ur4_A Galactanase; hydrolase, 80.0 2.9 0.00012 20.4 9.4 39 76-121 26-64 (399)
45 2qul_A D-tagatose 3-epimerase; 78.1 3.2 0.00014 20.1 4.9 13 263-275 141-153 (290)
46 3dx5_A Uncharacterized protein 76.3 3 0.00013 20.3 4.3 12 264-275 132-143 (286)
47 1xim_A D-xylose isomerase; iso 76.1 3.8 0.00016 19.6 9.9 125 12-153 32-184 (393)
48 1oj7_A Hypothetical oxidoreduc 72.1 4.7 0.0002 19.0 4.9 71 1-71 22-98 (408)
49 3kws_A Putative sugar isomeras 71.4 4.9 0.00021 18.9 6.2 96 177-275 65-166 (287)
50 1ps9_A 2,4-dienoyl-COA reducta 70.7 2.5 0.0001 20.8 2.8 85 87-192 148-243 (671)
51 2h9a_B CO dehydrogenase/acetyl 68.5 5.6 0.00024 18.4 5.3 24 218-241 188-214 (310)
52 3l5l_A Xenobiotic reductase A; 66.7 6.1 0.00026 18.2 4.3 17 210-226 204-220 (363)
53 1muw_A Xylose isomerase; atomi 65.4 6.4 0.00027 18.0 10.9 127 10-153 30-184 (386)
54 2i2x_B MTAC, methyltransferase 63.4 4.1 0.00017 19.4 2.7 158 66-240 42-213 (258)
55 1xla_A D-xylose isomerase; iso 62.7 7.2 0.0003 17.7 9.5 121 16-153 36-184 (394)
56 3m0m_A L-rhamnose isomerase; b 62.4 7.3 0.00031 17.7 4.5 69 205-275 149-220 (438)
57 2f46_A Hypothetical protein; 7 62.1 7.4 0.00031 17.6 4.2 85 98-202 22-113 (156)
58 3ktc_A Xylose isomerase; putat 62.0 4.4 0.00019 19.1 2.7 96 178-276 63-171 (333)
59 2pju_A Propionate catabolism o 61.4 4.1 0.00017 19.4 2.4 28 107-134 73-100 (225)
60 2bdq_A Copper homeostasis prot 59.6 8.1 0.00034 17.4 8.9 57 78-149 6-62 (224)
61 2g0w_A LMO2234 protein; putati 59.6 8.1 0.00034 17.4 4.5 20 180-200 72-91 (296)
62 2q02_A Putative cytoplasmic pr 59.6 8.1 0.00034 17.3 6.4 84 178-275 53-140 (272)
63 3l9w_A Glutathione-regulated p 58.7 8.4 0.00035 17.2 6.4 30 170-199 137-166 (413)
64 2q5c_A NTRC family transcripti 58.5 5 0.00021 18.8 2.4 36 104-139 105-140 (196)
65 3obe_A Sugar phosphate isomera 57.4 8.8 0.00037 17.1 5.2 93 175-275 75-170 (305)
66 2x7v_A Probable endonuclease 4 51.4 11 0.00046 16.5 4.7 25 174-199 45-69 (287)
67 1vc3_B L-aspartate-alpha-decar 49.1 12 0.0005 16.2 6.7 72 327-403 23-95 (96)
68 2c31_A Oxalyl-COA decarboxylas 48.7 12 0.0005 16.2 4.7 17 17-33 15-32 (568)
69 1a53_A IGPS, indole-3-glycerol 48.7 12 0.00051 16.2 3.5 16 128-143 139-154 (247)
70 1ozh_A ALS, acetolactate synth 48.5 12 0.00051 16.2 4.3 30 122-151 136-168 (566)
71 2d1z_A Endo-1,4-beta-D-xylanas 48.3 12 0.00051 16.1 4.9 55 177-238 184-241 (436)
72 1vlj_A NADH-dependent butanol 47.0 13 0.00054 16.0 6.2 72 1-72 13-94 (407)
73 1phz_A Protein (phenylalanine 44.0 8.6 0.00036 17.2 1.8 47 30-76 4-60 (429)
74 1bxb_A Xylose isomerase; xylos 43.9 14 0.0006 15.7 6.0 115 22-153 42-184 (387)
75 3bul_A Methionine synthase; tr 43.5 14 0.0006 15.7 3.0 50 179-240 139-188 (579)
76 1v97_A XD, xanthine dehydrogen 42.7 13 0.00055 16.0 2.5 48 19-72 103-161 (1332)
77 3lq1_A 2-succinyl-5-enolpyruvy 41.0 16 0.00066 15.4 4.0 40 363-402 453-495 (578)
78 1rm6_A 4-hydroxybenzoyl-COA re 40.2 15 0.00065 15.4 2.6 10 233-242 238-247 (769)
79 3igz_B Cofactor-independent ph 40.1 16 0.00068 15.3 7.7 118 97-240 85-203 (561)
80 1w32_A Endo-1,4-beta-xylanase 39.9 16 0.00068 15.3 2.7 59 178-239 194-253 (348)
81 2zr9_A Protein RECA, recombina 39.7 6.1 0.00026 18.2 0.5 48 84-131 47-102 (349)
82 2uva_G Fatty acid synthase bet 38.6 15 0.00062 15.6 2.3 34 205-239 463-501 (2060)
83 2w3s_B Xanthine dehydrogenase; 37.1 18 0.00075 15.0 2.9 12 299-310 644-655 (777)
84 2f9h_A PTS system, IIA compone 36.9 18 0.00076 15.0 3.1 29 345-373 101-129 (129)
85 2iht_A Carboxyethylarginine sy 36.3 18 0.00077 14.9 5.4 27 124-150 139-168 (573)
86 2vws_A YFAU, 2-keto-3-deoxy su 35.2 19 0.00081 14.8 5.9 91 44-138 9-113 (267)
87 1v77_A PH1877P, hypothetical p 34.9 19 0.00082 14.8 4.6 60 10-74 11-73 (212)
88 1n62_B Carbon monoxide dehydro 34.6 20 0.00082 14.8 2.6 14 230-243 261-274 (809)
89 1n82_A Xylanase, intra-cellula 34.4 20 0.00083 14.7 3.0 34 179-212 191-225 (331)
90 2nx9_A Oxaloacetate decarboxyl 34.0 20 0.00084 14.7 6.0 30 173-203 184-213 (464)
91 3hww_A 2-succinyl-5-enolpyruvy 33.9 20 0.00084 14.7 4.8 34 364-397 435-471 (556)
92 3by5_A Cobalamin biosynthesis 33.7 20 0.00085 14.7 3.1 30 59-89 49-78 (155)
93 1z41_A YQJM, probable NADH-dep 33.6 20 0.00085 14.6 7.0 18 210-227 190-207 (338)
94 3bio_A Oxidoreductase, GFO/IDH 32.9 7 0.00029 17.8 -0.1 44 99-142 70-118 (304)
95 3eya_A Pyruvate dehydrogenase 32.8 21 0.00088 14.6 4.9 43 363-405 425-470 (549)
96 3nl6_A Thiamine biosynthetic b 32.0 22 0.0009 14.5 8.3 29 76-105 111-140 (540)
97 3nrz_C Xanthine dehydrogenase/ 31.9 22 0.00091 14.5 2.4 10 300-309 606-615 (756)
98 1xi9_A Putative transaminase; 31.8 12 0.00049 16.3 0.8 86 86-188 114-206 (406)
99 3l23_A Sugar phosphate isomera 31.8 22 0.00091 14.4 4.1 19 258-276 147-165 (303)
100 2gou_A Oxidoreductase, FMN-bin 31.8 22 0.00091 14.4 4.5 23 127-151 80-102 (365)
101 2nyv_A Pgpase, PGP, phosphogly 31.6 22 0.00092 14.4 2.8 24 175-199 198-221 (222)
102 1rrm_A Lactaldehyde reductase; 31.2 22 0.00093 14.4 6.3 71 1-72 2-81 (386)
103 2pk8_A Uncharacterized protein 30.2 23 0.00097 14.3 3.8 57 197-267 4-60 (103)
104 1uhe_A Aspartate 1-decarboxyla 29.8 23 0.00098 14.2 4.8 63 327-396 22-85 (97)
105 2pgn_A Cyclohexane-1,2-dione h 28.8 24 0.001 14.1 3.1 29 122-150 131-162 (589)
106 2cev_A Protein (arginase); enz 28.4 25 0.001 14.1 3.9 27 169-197 242-268 (299)
107 1vbr_A Endo-1,4-beta-xylanase 27.9 25 0.0011 14.0 2.3 16 14-29 2-17 (328)
108 1ble_A Fructose permease; phos 27.6 25 0.0011 14.0 4.9 44 74-119 54-98 (163)
109 3kts_A Glycerol uptake operon 27.4 26 0.0011 14.0 6.5 53 94-150 7-61 (192)
110 3m0z_A Putative aldolase; MCSG 27.3 26 0.0011 13.9 5.9 28 161-188 130-157 (249)
111 2eee_A Uncharacterized protein 26.6 26 0.0011 13.9 4.3 59 205-273 88-146 (149)
112 3io5_A Recombination and repai 26.5 11 0.00045 16.5 -0.1 13 91-103 77-89 (333)
113 2ze6_A Isopentenyl transferase 26.1 17 0.00071 15.2 0.9 31 102-132 10-40 (253)
114 1ybh_A Acetolactate synthase, 25.6 28 0.0012 13.7 6.1 30 122-151 138-170 (590)
115 3c6c_A 3-keto-5-aminohexanoate 25.4 21 0.00088 14.5 1.2 44 173-219 45-93 (316)
116 2w6k_A COBE; biosynthetic prot 25.0 28 0.0012 13.7 2.6 27 63-89 56-82 (145)
117 1xp8_A RECA protein, recombina 24.7 13 0.00056 15.9 0.1 54 78-131 52-115 (366)
118 2zds_A Putative DNA-binding pr 24.6 29 0.0012 13.6 5.9 24 260-283 165-188 (340)
119 2x7j_A 2-succinyl-5-enolpyruvy 24.0 30 0.0012 13.5 2.7 39 364-402 474-515 (604)
120 2uwf_A Endoxylanase, alkaline 23.6 20 0.00086 14.6 0.9 55 176-237 202-259 (356)
121 1f06_A MESO-diaminopimelate D- 23.5 19 0.00078 14.9 0.7 63 78-143 44-112 (320)
122 2zvr_A Uncharacterized protein 23.4 30 0.0013 13.5 3.7 14 209-222 107-120 (290)
123 3hr8_A Protein RECA; alpha and 23.4 17 0.00072 15.2 0.5 22 84-105 47-70 (356)
124 1qtw_A Endonuclease IV; DNA re 23.4 30 0.0013 13.5 5.5 17 170-186 153-169 (285)
125 2q62_A ARSH; alpha/beta, flavo 22.3 32 0.0013 13.3 2.8 33 223-256 60-92 (247)
126 3elf_A Fructose-bisphosphate a 22.3 32 0.0013 13.3 5.2 18 122-139 26-43 (349)
127 2aeb_A Arginase 1; hydrolase, 22.0 32 0.0014 13.3 4.1 101 94-198 169-275 (322)
128 2v82_A 2-dehydro-3-deoxy-6-pho 22.0 32 0.0014 13.3 4.7 51 80-134 67-118 (212)
129 1wa3_A 2-keto-3-deoxy-6-phosph 21.7 33 0.0014 13.2 6.5 112 17-135 2-122 (205)
130 3gr4_A Pyruvate kinase isozyme 21.4 33 0.0014 13.2 1.6 34 360-396 442-475 (550)
131 3mi6_A Alpha-galactosidase; NE 21.2 33 0.0014 13.2 4.4 24 128-153 393-416 (745)
132 2uz1_A Benzaldehyde lyase; thi 20.7 34 0.0014 13.1 4.2 20 170-189 186-205 (563)
133 1u94_A RECA protein, recombina 20.7 21 0.00086 14.6 0.4 55 78-132 41-105 (356)
134 3i28_A Epoxide hydrolase 2; ar 20.4 35 0.0015 13.1 2.4 43 88-132 169-211 (555)
135 1nv8_A HEMK protein; class I a 20.1 35 0.0015 13.0 1.8 47 192-242 89-136 (284)
No 1
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae}
Probab=100.00 E-value=0 Score=782.55 Aligned_cols=415 Identities=43% Similarity=0.738 Sum_probs=392.4
Q ss_pred CCCCEEE-CCEEEECCCCHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEE
Q ss_conf 9871666-885898784299999974997899779999999999998614479789996410799999999997399289
Q gi|254780371|r 1 MSAFKYF-EGSLHAENVSLEKLAHVVQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLD 79 (431)
Q Consensus 1 m~~~~~~-~~~l~i~~~~l~~La~~~gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~d 79 (431)
|+.|+|+ ||+|++||++|.+||++|||||||||++.|++|+++|+++|+..+.+++||+|||+++.|++++++.|+|+|
T Consensus 25 m~~~~~~~~g~l~~~~v~l~~la~~~gTP~yvyd~~~i~~~~~~l~~a~~~~~~~i~YAvKaN~~~~vl~~l~~~G~G~D 104 (441)
T 3n2b_A 25 MDYFNYQEDGQLWAEQVPLADLANQYGTPLYVYSRATLERHWHAFDKSVGDYPHLICYAVKANSNLGVLNTLARLGSGFD 104 (441)
T ss_dssp SCSEEECTTSSEEETTEEHHHHHHHHCSSEEEEEHHHHHHHHHHHHHHTTTSCEEEEEEGGGCCCHHHHHHHHHTTCEEE
T ss_pred CCCEEECCCCEEEECCCCHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCEEE
T ss_conf 67366878997999994199999966998899879999999999998760589989999613898999999998399389
Q ss_pred EECHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCC
Q ss_conf 86899986522125784312444775420124444206872333322024676877411334421589987237786744
Q gi|254780371|r 80 IVSEGELRRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTH 159 (431)
Q Consensus 80 v~S~~El~~al~~G~~~~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~ 159 (431)
|+|.+|+++|+++|+++++|+|+||+|+.++|+.|++.|+..+|+||++|+++|.+++++.+++++|+|||||+++.+++
T Consensus 105 v~S~~El~~al~aG~~~~~Iv~~g~~K~~~~l~~ai~~gi~~i~ids~~El~~i~~~a~~~~~~~~v~lRinp~~~~~~~ 184 (441)
T 3n2b_A 105 IVSVGELERVLAAGGDPSKVVFSGVGKTEAEMKRALQLKIKCFNVESEPELQRLNKVAGELGVKAPISLRINPDVDAKTH 184 (441)
T ss_dssp ESSHHHHHHHHHTTCCGGGEEECCTTCCHHHHHHHHHTTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEBCCCCCTTTC
T ss_pred EECHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCC
T ss_conf 86999999999739992104862667988999999862445434430779999998888619997699999258886666
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCC
Q ss_conf 33322334445688711113457776415632200233556415644204899999999887653102666526880687
Q gi|254780371|r 160 KKISTGKKEDKFGIPIHQIHSLYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGG 239 (431)
Q Consensus 160 ~~~~tg~~~sKFGi~~~~~~~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGG 239 (431)
.++++++..||||++.+++..+++.++..+++++.|||||+|||+.+.+.|.++++.+.++++++++.|+++++||+|||
T Consensus 185 ~~~~~~~~~skfGi~~~~~~~~~~~~~~~~~l~l~Glh~HiGSq~~~~~~~~~a~~~~~~~~~~l~~~g~~~~~ldiGGG 264 (441)
T 3n2b_A 185 PYISTGLRDNKFGITFDRAAQVYRLAHSLPNLDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAEGIHIRHLDVGGG 264 (441)
T ss_dssp HHHHHHHHTSSSSBCGGGHHHHHHHHHHCTTEEEEEEECCTTCSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCSC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 34156877676676578899999975104682699999516876345389999999999999999970997004663377
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEECCCCCEEEEEEEEECCCCCCCCEEECCCCCCCCCCHHHCC
Q ss_conf 30002665455311456555654210245303441011120366325888764034689742200553000110011102
Q gi|254780371|r 240 LGIAYHSDHRPPSSSDYASLIHQYFGNLQCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMNDFMRPTLYDA 319 (431)
Q Consensus 240 f~i~y~~~~~~~~~~~~~~~i~~~~~~~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~vD~g~~~~~~p~~~~~ 319 (431)
||++|..++.+.+...............+++|++|||||||++||+++|+|+++|++.+++|+++|+|+|++++|++|++
T Consensus 265 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~li~EPGR~lva~ag~lvt~V~~~K~~~~~~~vivD~g~~~~~~~~~~~~ 344 (441)
T 3n2b_A 265 LGVVYRDELPPQPSEYAKALLDRLERHRDLELIFEPGRAIAANAGVLVTKVEFLKHTEHKNFAIIDAAMNDLIRPALYQA 344 (441)
T ss_dssp CCEEC-----CEECHHHHHHHHHHTTTCCSEEEECCSHHHHGGGEEEEEEEEEEEEC--CEEEEESCCTTTCCC------
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCEECCCCEEEEEEEEEEECCCCEEEEEECCCCCCCCHHHHCC
T ss_conf 57677755662245666656555403667167207750033366179999999866398259999340110023666446
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCEEE
Q ss_conf 46532222346777615899981000566665621005668888899996797023334027788986659999889689
Q gi|254780371|r 320 YHEINYIVNPAGDRLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMVNGSQFH 399 (431)
Q Consensus 320 ~~~i~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~s~~s~fn~~p~p~~v~v~~g~~~ 399 (431)
+|++..... .+....+++|+||+|+++|+|++++.+| +++||+|+|.+||||+++|+||||++|+|++|+|++|+++
T Consensus 345 ~~~i~~~~~--~~~~~~~~~i~Gp~C~s~D~l~~~~~lp-l~~GD~lv~~~~GAY~~s~ssnfN~~p~p~~v~v~~~~~~ 421 (441)
T 3n2b_A 345 WQDIIPLRP--RQGEAQTYDLVGPVCETSDFLGKDRDLV-LQEGDLLAVRSSGAYGFTMSSNYNTRPRVAEVMVDGNKTY 421 (441)
T ss_dssp -CCEEESSC--CSSCCEEEEEECSSSSTTCEEEEEEEEC-CCTTCEEEESSCSSSSGGGCBCTTTCCCCEEEEEETTEEE
T ss_pred CCCEECCCC--CCCCCEEEEEEECCCCCCCEEEECCCCC-CCCCCEEEECCCCHHHHHHHCCCCCCCCCCEEEEECCEEE
T ss_conf 431232457--8899428999811757885993511168-9999999984947435656382338999858999999899
Q ss_pred EEEECCCHHHHHHCCCC-CH
Q ss_conf 99824898899730888-56
Q gi|254780371|r 400 IIRPRMTFQELIELDSI-PA 418 (431)
Q Consensus 400 ~ir~ret~ed~~~~~~~-p~ 418 (431)
+||||||+||++++|.+ |+
T Consensus 422 lir~re~~~dl~~~~~~~p~ 441 (441)
T 3n2b_A 422 LVRQREELSSLWALESVLPE 441 (441)
T ss_dssp EEECCCCGGGGGTTBCCCCC
T ss_pred EEECCCCHHHHHCCCCCCCC
T ss_conf 99789999999644788999
No 2
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for structural genomics, riken spring-8 center, riken genomic sciences center; 1.99A {Aquifex aeolicus VF5}
Probab=100.00 E-value=0 Score=743.27 Aligned_cols=410 Identities=43% Similarity=0.741 Sum_probs=389.9
Q ss_pred CCCEEECCEEEECCCCHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 87166688589878429999997499789977999999999999861447978999641079999999999739928986
Q gi|254780371|r 2 SAFKYFEGSLHAENVSLEKLAHVVQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIV 81 (431)
Q Consensus 2 ~~~~~~~~~l~i~~~~l~~La~~~gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~ 81 (431)
++|+|+||+|+|+|+++.+|+++|||||||||++.|++|+++|+++|+ +.+++||+|||+++.|++++++.|+|+||+
T Consensus 9 ~~~~~~~~~l~~~g~~l~~La~~~gTP~yv~d~~~i~~~~~~l~~~~p--~~~i~YAvKaN~~~~vl~~l~~~G~g~dva 86 (420)
T 2p3e_A 9 PYLEYRDGELFIEGVSLKELAQTFGTPLYVYSSNFIKERFEAYRKAFP--DALICYAVKANFNPHLVKLLGELGAGADIV 86 (420)
T ss_dssp TTEEEETTEEEETTEEHHHHHHHHCSSEEEEEHHHHHHHHHHHHHHST--TSEEEEEGGGCCCHHHHHHHHHTTCEEEES
T ss_pred CCCEEECCEEEECCCCHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHCC--CCEEEEEECCCCCHHHHHHHHHHCCCEEEE
T ss_conf 542898999999991099999864998899999999999999998689--988999977689999999999809982897
Q ss_pred CHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCC
Q ss_conf 89998652212578431244477542012444420687233332202467687741133442158998723778674433
Q gi|254780371|r 82 SEGELRRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKK 161 (431)
Q Consensus 82 S~~El~~al~~G~~~~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~ 161 (431)
|.+|+++|+++|+++++|+|+||+|++++++.|+++|+.++++||++|+++|.+.+.+.++..+|+|||||+.+.+++..
T Consensus 87 S~~El~~al~~G~~~~~Ii~~g~~k~~~~l~~a~~~gv~~~~~ds~~El~~i~~~~~~~~~~~~v~lRin~~~~~~~~~~ 166 (420)
T 2p3e_A 87 SGGELYLAKKAGIPPERIVYAGVGKTEKELTDAVDSEILMFNVESRQELDVLNEIAGKLGKKARIAIRVNPDVDPKTHPY 166 (420)
T ss_dssp SHHHHHHHHHTTCCGGGEEECSSCCCHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHTCCEEEEEEEEC---------
T ss_pred CHHHHHHHHHCCCCHHHEEECCCCCCCHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCC
T ss_conf 28999999981798567787243442045898987393373148989999999888733999479999815878666755
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCC
Q ss_conf 32233444568871111345777641563220023355641564420489999999988765310266652688068730
Q gi|254780371|r 162 ISTGKKEDKFGIPIHQIHSLYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLG 241 (431)
Q Consensus 162 ~~tg~~~sKFGi~~~~~~~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~ 241 (431)
+.+++..||||++.+++.++++.++++++|++.|||||+|||+.+++.|.++++.+.++++++++.|+++++||+|||||
T Consensus 167 ~~~~~~~skfg~~~~~~~~~~~~~~~~~~l~~~Glh~H~gS~~~~~~~~~~ai~~~~~l~~~~~~~g~~l~~idiGGG~~ 246 (420)
T 2p3e_A 167 IATGMQKSKFGVDIREAQKEYEYASKLENLEIVGIHCHIGSQILDISPYREAVEKVVSLYESLTQKGFDIKYLDIGGGLG 246 (420)
T ss_dssp -------CCSCEEGGGHHHHHHHHHTCTTEEEEEEECCCCSSBSSCTHHHHHHHHHHHHHHHHHHTTCCCCEEECCCCBC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCC
T ss_conf 35777655566440344788999988459608898744766788848877678899999999997398856441258878
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEECCCCCEEEEEEEEECCCCCCCCEEECCCCCCCCCCHHHCCCC
Q ss_conf 00266545531145655565421024530344101112036632588876403468974220055300011001110246
Q gi|254780371|r 242 IAYHSDHRPPSSSDYASLIHQYFGNLQCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMNDFMRPTLYDAYH 321 (431)
Q Consensus 242 i~y~~~~~~~~~~~~~~~i~~~~~~~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~vD~g~~~~~~p~~~~~~~ 321 (431)
++|..++..++++.+...........+++|++|||||+|++||+++++|+++|++.+++|+++|+|+|++++|+++..++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~EPGR~lva~ag~lv~~V~~~k~~~~~~~~~~d~G~~~~~~~~~~~~~~ 326 (420)
T 2p3e_A 247 IKYKPEDKEPAPQDLADLLKDLLENVKAKIILEPGRSIMGNAGILITQVQFLKDKGSKHFIIVDAGMNDLIRPSIYNAYH 326 (420)
T ss_dssp CCCSTTCCCCCHHHHHHHHTTTC--CCSEEEECCSHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTCCHHHHHCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCEEEEEEEEEEEEEEEEEECCCEEEEEEECCCCCCCCHHHHCCCC
T ss_conf 65677654410466889999986455978999047467513699999999998379827999957747755635514431
Q ss_pred CCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCEEEEE
Q ss_conf 53222234677761589998100056666562100566888889999679702333402778898665999988968999
Q gi|254780371|r 322 EINYIVNPAGDRLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMVNGSQFHII 401 (431)
Q Consensus 322 ~i~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~s~~s~fn~~p~p~~v~v~~g~~~~i 401 (431)
++.+... .+....+++|+||||+++|+|+.++.+|++++||+|+|.|||||+++|+|+||++|+|++|++++|++++|
T Consensus 327 ~~~~~~~--~~~~~~~~~i~G~tC~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~~s~Fn~~p~p~~v~v~~g~~~li 404 (420)
T 2p3e_A 327 HIIPVET--KERKKVVADIVGPICETGDFLALDREIEEVQRGEYLAVLSAGAYGFAMSSHYNMRPRAAEVLVENGSVKLI 404 (420)
T ss_dssp CEEESBC--CC---CEEEEECSSSSTTCEEEEEEECCCCCTTCEEEECSCTTTTGGGCBCGGGCCCCEEEEEETTEEEEE
T ss_pred CEEEECC--CCCCEEEEEEEECCCCCCCEEEECCCCCCCCCCCEEEECCCCHHHHHHHCCCCCCCCCCEEEEECCEEEEE
T ss_conf 1123015--78880589999768689989922663788999999999796732455627333899883999989979999
Q ss_pred EECCCHHHHHHCCC
Q ss_conf 82489889973088
Q gi|254780371|r 402 RPRMTFQELIELDS 415 (431)
Q Consensus 402 r~ret~ed~~~~~~ 415 (431)
|||||+||++++|+
T Consensus 405 r~~et~ed~~~~~~ 418 (420)
T 2p3e_A 405 RKRENYDYIVEPSL 418 (420)
T ss_dssp ECCCCHHHHHGGGS
T ss_pred ECCCCHHHHHHHCC
T ss_conf 76899999986347
No 3
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A*
Probab=100.00 E-value=0 Score=727.61 Aligned_cols=416 Identities=37% Similarity=0.580 Sum_probs=385.2
Q ss_pred CCCEEECCEEEECCCCHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCC------CCCEEEEEEECCCCHHHHHHHHHCC
Q ss_conf 8716668858987842999999749978997799999999999986144------7978999641079999999999739
Q gi|254780371|r 2 SAFKYFEGSLHAENVSLEKLAHVVQTPFYCYSTTAIEKNYLTFSNAFDG------MDTMVCYALKANSNQAVIKTLAHLG 75 (431)
Q Consensus 2 ~~~~~~~~~l~i~~~~l~~La~~~gTP~yV~d~~~i~~n~~~l~~a~~~------~~~~i~yAvKaN~~~~il~~l~~~G 75 (431)
+.|+++||+|+|+|+++.+|+++|||||||||++.|++|+++|+++|+. .+++++||+|||+++.|++++.+.|
T Consensus 5 ~~~~~~~g~l~~~~~~~~~La~~~GTP~yv~d~~~l~~n~~~l~~af~~~~~~~g~~~~i~YAvKaN~~~~vl~~l~~~G 84 (434)
T 1twi_A 5 DTVEIKDGRFFIDGYDAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETGKEFIVAYAYKANANLAITRLLAKLG 84 (434)
T ss_dssp TTEEEETTEEEETTEEHHHHHHHHCSSEEEEEHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEGGGCCCHHHHHHHHHTT
T ss_pred CCEEEECCEEEECCEEHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 81899999999999899999997699889987999999999999988776762388759999862489999999999849
Q ss_pred CCEEEECHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCC
Q ss_conf 92898689998652212578431244477542012444420687233332202467687741133442158998723778
Q gi|254780371|r 76 SGLDIVSEGELRRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDIN 155 (431)
Q Consensus 76 ~g~dv~S~~El~~al~~G~~~~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~ 155 (431)
+|+||+|.+|+++|+++|+++++|+|+||+|++++|+.|++.|+..+++||++|++++.+.+++.++.++|+||+||+.+
T Consensus 85 ~G~dvaS~~El~~al~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~~~~ds~~el~~i~~~~~~~~~~~~v~lRin~~~~ 164 (434)
T 1twi_A 85 CGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIEANIRAFNVDSISELILINETAKELGETANVAFRINPNVN 164 (434)
T ss_dssp CEEEECSHHHHHHHHHTTCCGGGEEECCSSCCHHHHHHHHHTTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEEECCCC
T ss_pred CCEEEECHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 98399789999999963899871898489899999998986897067311356788999999982998628999605768
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCH--HHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 674433322334445688711113--457776415632200233556415644204899999999887653102666526
Q gi|254780371|r 156 ANTHKKISTGKKEDKFGIPIHQIH--SLYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQH 233 (431)
Q Consensus 156 ~~~~~~~~tg~~~sKFGi~~~~~~--~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 233 (431)
.+++..+.++...+|||++.++.. ..+....+.+++++.|+|||+|||+.+++.|.++++.+.+++.++++.|+++++
T Consensus 165 ~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~~~l~~~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 244 (434)
T 1twi_A 165 PKTHPKISTGLKKNKFGLDVESGIAMKAIKMALEMEYVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGIEIED 244 (434)
T ss_dssp TTTCHHHHHHHHHSSCSEESTTSHHHHHHHHHHHCSSEEEEEEECCCCSSBCCSHHHHHHHHHHHHHHHHHHHTTCCCSE
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 77674402576655566430004689999999864899725788983565344315899999999999999985998037
Q ss_pred EEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCC-----CCCEEEEEECCEECCCCCEEEEEEEEECCCCCCCCEEECCCC
Q ss_conf 880687300026654553114565556542102-----453034410111203663258887640346897422005530
Q gi|254780371|r 234 IDVGGGLGIAYHSDHRPPSSSDYASLIHQYFGN-----LQCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAM 308 (431)
Q Consensus 234 ldiGGGf~i~y~~~~~~~~~~~~~~~i~~~~~~-----~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~vD~g~ 308 (431)
||+||||+++|..++.+++.+.+...+...... .+++|++|||||+|++||+++|+|+++|++.++.|+++|+|+
T Consensus 245 ldiGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~EPGR~lva~ag~lvt~V~~~k~~~~~~~~~~d~g~ 324 (434)
T 1twi_A 245 VNLGGGLGIPYYKDKQIPTQKDLADAIINTMLKYKDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTKWVMIDAGM 324 (434)
T ss_dssp EECCCCBCCCSSSSSCCCCHHHHHHHHHHHHHTTTTTSCCCEEEECCSHHHHGGGEEEEEEEEEEEECSSCEEEEESCCT
T ss_pred EEECCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEECCEEEEEEEEEEECCCCEEEEEECCCC
T ss_conf 78747675230478888647999999998875442036786799526708874776899999976315872699981576
Q ss_pred CCCCCCHHHCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHCCCCCCCCC
Q ss_conf 00110011102465322223467776158999810005666656210056688888999967970233340277889866
Q gi|254780371|r 309 NDFMRPTLYDAYHEINYIVNPAGDRLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQSGTYNSRLLI 388 (431)
Q Consensus 309 ~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~s~~s~fn~~p~p 388 (431)
|++++|.+|.+++++.... ......+++|+||||+++|+|+++..+|++++||+|+|.|||||+++|+|+||++|+|
T Consensus 325 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~G~tC~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~~s~FN~~~~p 401 (434)
T 1twi_A 325 NDMMRPAMYEAYHHIINCK---VKNEKEVVSIAGGLCESSDVFGRDRELDKVEVGDVLAIFDVGAYGISMANNYNARGRP 401 (434)
T ss_dssp TTCCHHHHHCCCCCEEESB---CCSCEEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEEECCSSSSGGGCBCTTTCCCC
T ss_pred CCCCCHHHHHCCCEEEECC---CCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCCCCCCHHHCCCCCCCCCC
T ss_conf 7876224442230344025---7899718999990888988888261668999899999859750317561866699988
Q ss_pred EEEEEECCEEEEEEECCCHHHHHHCCCCCHHH
Q ss_conf 59999889689998248988997308885688
Q gi|254780371|r 389 PEIMVNGSQFHIIRPRMTFQELIELDSIPAWL 420 (431)
Q Consensus 389 ~~v~v~~g~~~~ir~ret~ed~~~~~~~p~~~ 420 (431)
++|++++|+.++||+|||+||++++|.+|+||
T Consensus 402 ~~v~v~~~~~~~ir~~et~ed~~~~~~~p~~l 433 (434)
T 1twi_A 402 RMVLTSKKGVFLIRERETYADLIAKDIVPPHL 433 (434)
T ss_dssp EEEEEETTEEEEEECCCCHHHHTTTBCCCGGG
T ss_pred CEEEEECCEEEEEECCCCHHHHHHCCCCCHHH
T ss_conf 39999899289997689899997478683531
No 4
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A*
Probab=100.00 E-value=0 Score=696.10 Aligned_cols=398 Identities=41% Similarity=0.654 Sum_probs=372.0
Q ss_pred CCHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCC
Q ss_conf 42999999749978997799999999999986144797899964107999999999973992898689998652212578
Q gi|254780371|r 16 VSLEKLAHVVQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEGELRRALAAPVP 95 (431)
Q Consensus 16 ~~l~~La~~~gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~S~~El~~al~~G~~ 95 (431)
.++++|+++|||||||||++.|++|+++|+++|++.+.+++||+|||+++.|++++.+.|+|+||+|.+|+++|+++|++
T Consensus 22 ~~~~~l~~~~gTP~yv~d~~~l~~n~~~~~~a~~~~~~~i~YAvKaN~~~~vl~~l~~~G~g~dvaS~~El~~al~~G~~ 101 (425)
T 2qgh_A 22 FNYEELFQTHKTPFYLYDFDKIKQAFLNYKEAFKGRKSLICYALKANSNLSILSLLAHLESGADCVSIGEIQRALKAGIK 101 (425)
T ss_dssp -CHHHHHHHCCSSEEEEEHHHHHHHHHHHHHTTCSSCEEEEEEGGGCCCHHHHHHHHHTTCEEEESSHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCC
T ss_conf 89999997339988998699999999999985799997599997138999999999980993998299999999975998
Q ss_pred CCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 43124447754201244442068723333220246768774113344215899872377867443332233444568871
Q gi|254780371|r 96 AERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPI 175 (431)
Q Consensus 96 ~~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~ 175 (431)
+++|+|+||+|++++++.|++.|+.++++||++|+++|.+++++.+++++|+||+||+++..++..+++|...||||++.
T Consensus 102 ~~~Ii~~gp~k~~~~i~~a~~~gv~~~~~ds~~el~~i~~~a~~~~~~~~v~lRinp~~~~~~~~~~~~g~~~skfg~~~ 181 (425)
T 2qgh_A 102 PYRIVFSGVGKSAFEIEQALKLNILFLNVESFMELKTIETIAQSLGIKARISIRINPNIDAKTHPYISTGLKENKFGVGE 181 (425)
T ss_dssp GGGEEECCTTCCHHHHHHHHHTTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEBCCCCCCCSCGGGBCCSTTSSSSBCH
T ss_pred HHHEEECCCCCCHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 67846425668889999887638200002137899999999986499747999982798866676523664446665026
Q ss_pred CCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHH
Q ss_conf 11134577764156322002335564156442048999999998876531026665268806873000266545531145
Q gi|254780371|r 176 HQIHSLYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSD 255 (431)
Q Consensus 176 ~~~~~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~ 255 (431)
+++.++++..+..+++++.|+|||+|||+.+.+.|.++++.+..++...+..|..++++|+||||+++|...... +..+
T Consensus 182 ~~~~~~~~~~~~~~~l~~~Glh~HvgS~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~idiGGG~~~~~~~~~~~-~~~~ 260 (425)
T 2qgh_A 182 KEALEMFLWAKKSAFLEPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGIDLRFFDVGGGIGVSYENEETI-KLYD 260 (425)
T ss_dssp HHHHHHHHHHHHCSSEEEEEEECCCBSSBCCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCCCBCCCTTSCCCC-CHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCC-HHHH
T ss_conf 789999875542043578789970686666606788888888899999997099877676668667677775531-0899
Q ss_pred HHHHHHHHHCCCCCEEEEEECCEECCCCCEEEEEEEEECCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCCE
Q ss_conf 65556542102453034410111203663258887640346897422005530001100111024653222234677761
Q gi|254780371|r 256 YASLIHQYFGNLQCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMNDFMRPTLYDAYHEINYIVNPAGDRLH 335 (431)
Q Consensus 256 ~~~~i~~~~~~~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~vD~g~~~~~~p~~~~~~~~i~~~~~~~~~~~~ 335 (431)
++..........++++++|||||+|++||+++|+|.++|+..+++|+++|+|+++++++.+++.+|++..... ....+.
T Consensus 261 ~~~~~~~~~~~~~~~l~~EPGR~lva~ag~llt~V~~~K~~~~~~~~~~D~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 339 (425)
T 2qgh_A 261 YAQGILNALQGLDLTIICEPGRSIVAESGELITQVLYEKKAQNKRFVIVDAGMNDFLRPSLYHAKHAIRVITP-SKGREI 339 (425)
T ss_dssp HHHHHHHHTTTCCCEEEECCCHHHHTTTEEEEEEEEEEEC--CCCEEEESCCTTTCCHHHHHCCCCCEEECSC-C---CC
T ss_pred HHHHHHHHHCCCCCEEEECCHHHHHHHCEEEEEEEEEEEECCCEEEEEECCCHHCCCCHHHHCCCCCEEEECC-CCCCCC
T ss_conf 9999887650557548853006755322589999999950399049998774210468556045453254024-678874
Q ss_pred EEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCEEEEEEECCCHHHHHHCCC
Q ss_conf 58999810005666656210056688888999967970233340277889866599998896899982489889973088
Q gi|254780371|r 336 IHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMVNGSQFHIIRPRMTFQELIELDS 415 (431)
Q Consensus 336 ~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~s~~s~fn~~p~p~~v~v~~g~~~~ir~ret~ed~~~~~~ 415 (431)
.+++|+||||+++|+|++++.||++++||+|+|.|||||+++|+|+||++|+|++|++++|++++||||||+||++++|.
T Consensus 340 ~~~~i~GptC~s~D~l~~~~~lP~l~~GD~l~f~~~GAY~~~~~s~Fn~~p~p~~v~~~~g~~~~i~~ret~~dl~~~~~ 419 (425)
T 2qgh_A 340 SPCDVVGPVCESSDTFLKDAHLPELEPGDKIAIEKVGAYGSSMASQYNSRPKLLELALEDHKIRVIRKREALEDLWRLEE 419 (425)
T ss_dssp EEEEEECSSSSTTCEEEEEEEECCCCTTCEEEECSCSSSSGGGCCCTTTCCCCEEEEECC-CEEEEECCCCGGGGTGGGT
T ss_pred CEEEEECCCCCCCCEECCCCCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCCCCEEEEECCEEEEEECCCCHHHHHHHHH
T ss_conf 27999897868887985066168999999999989752136451744389998289999998999975899999997178
No 5
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, structural genomics, TB structural genomics consortium; HET: LLP; 2.33A {Mycobacterium tuberculosis H37RV} PDB: 1hkv_A* 1hkw_A
Probab=100.00 E-value=0 Score=695.72 Aligned_cols=413 Identities=28% Similarity=0.429 Sum_probs=375.3
Q ss_pred ECCEEEECCCCHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHH
Q ss_conf 68858987842999999749978997799999999999986144797899964107999999999973992898689998
Q gi|254780371|r 7 FEGSLHAENVSLEKLAHVVQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEGEL 86 (431)
Q Consensus 7 ~~~~l~i~~~~l~~La~~~gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~S~~El 86 (431)
.+|+|+|+|+++.+|+++|||||||||++.|++|+++|+++|+. +++++||+|||+++.|++++.++|+|+||+|.+|+
T Consensus 22 ~~g~l~~~g~~l~~La~~~GTP~yV~d~~~i~~n~~~l~~af~~-~~~i~yAvKaN~~~~vl~~l~~~G~G~dvaS~~El 100 (467)
T 2o0t_A 22 EVGVVCIAGIPLTQLAQEYGTPLFVIDEDDFRSRCRETAAAFGS-GANVHYAAKAFLCSEVARWISEEGLCLDVCTGGEL 100 (467)
T ss_dssp SSSCEEETTEEHHHHHHHHCSSEEEEEHHHHHHHHHHHHHHTSS-GGGBEEEGGGCCCHHHHHHHHHHTCEEEECSHHHH
T ss_pred CCCEEEECCEEHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHCCC-CCEEEEEECCCCCHHHHHHHHHCCCEEEEECHHHH
T ss_conf 99979999964999999769998998899999999999985689-98799987428879999999981997999899999
Q ss_pred HHHHHCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 65221257843124447754201244442068723333220246768774113344215899872377867443332233
Q gi|254780371|r 87 RRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGK 166 (431)
Q Consensus 87 ~~al~~G~~~~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~ 166 (431)
++|+++|+++++|+|+||+|++++|+.|+..|+.++++||++|++++.+++.+.++..+|++|+||++...++..+.++.
T Consensus 101 ~~al~~G~~~~~Ii~~gp~k~~~~l~~a~~~gv~~i~iDs~~El~~l~~~~~~~~~~~~v~lrl~~~~~~~~~~~~~~~~ 180 (467)
T 2o0t_A 101 AVALHASFPPERITLHGNNKSVSELTAAVKAGVGHIVVDSMTEIERLDAIAGEAGIVQDVLVRLTVGVEAHTHEFISTAH 180 (467)
T ss_dssp HHHHHTTCCGGGEEECCTTCCHHHHHHHHHHTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEEECSEEEEETEEEEESS
T ss_pred HHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCC
T ss_conf 99997598933299918989999999877504325884678999999998776398741345320476655542234664
Q ss_pred CCCCCCCCCCCCHHH--HHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-----HCCCCCCCEEEECCC
Q ss_conf 444568871111345--7776415632200233556415644204899999999887653-----102666526880687
Q gi|254780371|r 167 KEDKFGIPIHQIHSL--YAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQL-----RSNGHNIQHIDVGGG 239 (431)
Q Consensus 167 ~~sKFGi~~~~~~~~--~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l-----~~~g~~~~~ldiGGG 239 (431)
..||||++.++...+ ++.+.+..++++.|+|||+|||+.+++.|.++++.+.+++.++ ...+..+++||+|||
T Consensus 181 ~~skfG~~~~~~~~~~~~~~~~~~~~~~l~Glh~H~gs~~~d~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ld~GGG 260 (467)
T 2o0t_A 181 EDQKFGLSVASGAAMAAVRRVFATDHLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEFGPEKTAQIATVDLGGG 260 (467)
T ss_dssp CCSSSSEETTTTHHHHHHHHHHHCSSEEEEEEECCCEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCEEECCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 55655765015678999999973569857789886388878708899999999998888998656750756321033178
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCC-------CCCEEEEEECCEECCCCCEEEEEEEEEC-----CCCCCCCEEECCC
Q ss_conf 300026654553114565556542102-------4530344101112036632588876403-----4689742200553
Q gi|254780371|r 240 LGIAYHSDHRPPSSSDYASLIHQYFGN-------LQCKIILEPGRFLVADVGILVTKVISIK-----KSADKTFVILDVA 307 (431)
Q Consensus 240 f~i~y~~~~~~~~~~~~~~~i~~~~~~-------~~~~l~~EPGR~lva~ag~ll~~V~~vK-----~~~~~~~~~vD~g 307 (431)
|+++|..++..++++.+++.+.+.+++ .++++++|||||+|++||+++++|..+| ...+++|+++|+|
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~EPGR~lv~~ag~llt~V~~~~~~~~~~~~~~~~~~vdag 340 (467)
T 2o0t_A 261 LGISYLPSDDPPPIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVDVSATAHRRYVSVDGG 340 (467)
T ss_dssp BCCCSSTTCCCCCHHHHHHHHHHHHHHHHHHTTCCCCEEEBCCSHHHHSTTEEEEEEEEEEEEEECSSSCEEEEEEESCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEEECCEEEEEEEEEEEEEECCCCCCEEEEEECCC
T ss_conf 67467777888877899999999999875320576750898663078654479999999997420232376589998876
Q ss_pred CCCCCCCHHHCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEECC-CCCCCCEEEEECCCCHHHHHHCCCCCCC
Q ss_conf 000110011102465322223467776158999810005666656210056-6888889999679702333402778898
Q gi|254780371|r 308 MNDFMRPTLYDAYHEINYIVNPAGDRLHIHADIVGPICETGDFIALNRKIA-LPRPGDLLYIEKTGAYGAVQSGTYNSRL 386 (431)
Q Consensus 308 ~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp-~l~~GD~l~i~~~GAY~~s~~s~fn~~p 386 (431)
+++++++++|++++++.... ...+.+..+++|+||||+++|+|++++.+| ++++||+|+|.|||||+++|+|+||++|
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~G~tC~~~D~l~~~~~lP~~l~~GD~l~f~~~GAY~~~~s~~fN~~~ 419 (467)
T 2o0t_A 341 MSDNIRTALYGAQYDVRLVS-RVSDAPPVPARLVGKHCESGDIIVRDTWVPDDIRPGDLVAVAATGAYCYSLSSRYNMVG 419 (467)
T ss_dssp TTTCCHHHHHCCCCCEEECS-SCCCSCEEEEEEECSSSSTTCEEEEEEEEETTCCTTCEEEESCCSSSSSTTCBCGGGCC
T ss_pred CCCCCCHHHHCCCCCEEECC-CCCCCCEEEEEEEECCCCCCCEEEECCCCCCCCCCCCEEEECCCCHHHHHHHCCCCCCC
T ss_conf 54566856718756348525-77889826999996587998799256568888999999998592132477748365899
Q ss_pred CCEEEEEECCEEEEEEECCCHHHHHHCCC--CCHHHH
Q ss_conf 66599998896899982489889973088--856886
Q gi|254780371|r 387 LIPEIMVNGSQFHIIRPRMTFQELIELDS--IPAWLQ 421 (431)
Q Consensus 387 ~p~~v~v~~g~~~~ir~ret~ed~~~~~~--~p~~~~ 421 (431)
+|++|++++|++++||||||+||++++|+ +|++.=
T Consensus 420 ~P~~v~v~~g~~~lir~ret~ed~~~~~~~~~p~~~~ 456 (467)
T 2o0t_A 420 RPAVVAVHAGNARLVLRRETVDDLLSLEVRGVPRGKL 456 (467)
T ss_dssp CCEEEEEETTEEEEEECCCCHHHHHTTBCC-------
T ss_pred CCCEEEEECCEEEEEECCCCHHHHHHHHHHHCCCHHH
T ss_conf 9838999999699998889999998534311875566
No 6
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans}
Probab=100.00 E-value=0 Score=692.20 Aligned_cols=411 Identities=27% Similarity=0.425 Sum_probs=377.0
Q ss_pred EEECCCCHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHH
Q ss_conf 89878429999997499789977999999999999861447978999641079999999999739928986899986522
Q gi|254780371|r 11 LHAENVSLEKLAHVVQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEGELRRAL 90 (431)
Q Consensus 11 l~i~~~~l~~La~~~gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~S~~El~~al 90 (431)
|.+++++|.+|+++|||||||||++.|++|+++|+++|+ .+++++||+|||+++.|++++.++|+|+||+|.+|+++|+
T Consensus 1 ~~~~~~~l~~la~~~gTP~yV~d~~~i~~n~~~l~~~~~-~~~~i~yA~KaN~~~~vl~~l~~~G~g~dvaS~~El~~al 79 (428)
T 2j66_A 1 MNLDQAEITALTKRFETPFYLYDGDFIEAHYRQLRSRTN-PAIQFYLSLKANNNIHLAKLFRQWGLGVEVASAGELALAR 79 (428)
T ss_dssp ---CHHHHHHHHHHSCSSEEEEEHHHHHHHHHHHHHTSC-TTEEEEEEGGGCCCHHHHHHHHHTTCEEEESSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHCC-CCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHH
T ss_conf 943655499999841998899889999999999985268-9978999974279999999999819929973999999999
Q ss_pred HCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 12578431244477542012444420687233332202467687741133442158998723778674433322334445
Q gi|254780371|r 91 AAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDK 170 (431)
Q Consensus 91 ~~G~~~~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sK 170 (431)
++|+++++|+|+||+|++++++.|+++|+.++++||++|+++|.+.+++.+...++.+|+||+.+.+. ..+.+|...||
T Consensus 80 ~~G~~~~~ii~~gp~k~~~~l~~a~~~gv~~~~~d~~~el~~i~~~~~~~~~~~~v~~r~~~~~~~~~-~~~~~g~~~sk 158 (428)
T 2j66_A 80 HAGFSAENIIFSGPGKKRSELEIAVQSGIYCIIAESVEELFYIEELAEKENKTARVAIRINPDKSFGS-TAIKMGGVPRQ 158 (428)
T ss_dssp HTTCCGGGEEECCSCCCHHHHHHHHHHTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEEECSSCC---CCCSSSCCCCS
T ss_pred HCCCCHHHEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCE-EEEECCCCCHH
T ss_conf 74999201897688898999987773595110367899999999988863996168851277654311-22104777100
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH-CCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf 6887111134577764156322002335564156442048999999998876531-026665268806873000266545
Q gi|254780371|r 171 FGIPIHQIHSLYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLR-SNGHNIQHIDVGGGLGIAYHSDHR 249 (431)
Q Consensus 171 FGi~~~~~~~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~~~ldiGGGf~i~y~~~~~ 249 (431)
||++.+++.+.++......++++.|+|||+|||+.+++.|.++++.+.++++.+. +.|+.+++||+||||+++|..++.
T Consensus 159 fg~~~~~~~~~~~~~~~~~~l~~~G~H~h~gS~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ldiGGG~~~~~~~~~~ 238 (428)
T 2j66_A 159 FGMDESMLDAVMDAVRSLQFTKFIGIHVYTGTQNLNTDSIIESMKYTVDLGRNIYERYGIVCECINLGGGFGVPYFSHEK 238 (428)
T ss_dssp SSEEGGGHHHHHHHHHHCTTEEEEEEECCCCSCBCCHHHHHHHHHHHHHHHHHHHHHHCCCCSEEECCCCBCCCCC--CC
T ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCC
T ss_conf 26548989889987642034425888884787744103599999999999999999659863044315887876544566
Q ss_pred CCCHHHHHHHHHHHHCC------CCCEEEEEECCEECCCCCEEEEEEEEECCCCCCCCEEECCCCCCCCCCHHHCCCCCC
Q ss_conf 53114565556542102------453034410111203663258887640346897422005530001100111024653
Q gi|254780371|r 250 PPSSSDYASLIHQYFGN------LQCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMNDFMRPTLYDAYHEI 323 (431)
Q Consensus 250 ~~~~~~~~~~i~~~~~~------~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~vD~g~~~~~~p~~~~~~~~i 323 (431)
+++++.|++.++..++. .+++||+|||||+|++||+++++|+++|++.+++|+++|+|++++++|+++++.++.
T Consensus 239 ~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~EPGR~lva~ag~lv~~V~~~k~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 318 (428)
T 2j66_A 239 ALDIGKITRTVSDYVQEARDTRFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKGEVFVIVDGGMHHHAASTFRGRSMRS 318 (428)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTTCTTCEEEEEESHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTCTTC---------
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEEECCCCEEEEEEEEECCCCCEEEEECCEEECCCCHHHCCCCCCC
T ss_conf 42078899999988765320258874699724555700105267999999716985189987610015632434632122
Q ss_pred ------CCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHC-CCCCCCCCEEEEEECC
Q ss_conf ------222234677761589998100056666562100566888889999679702333402-7788986659999889
Q gi|254780371|r 324 ------NYIVNPAGDRLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQSG-TYNSRLLIPEIMVNGS 396 (431)
Q Consensus 324 ------~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~s~~s-~fn~~p~p~~v~v~~g 396 (431)
.++....+.....+++|+||||+++|+|++++.+|.+++||+|+|.|||||+++|++ +||++|+|++|++++|
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~lp~l~~GD~lvf~~~GAY~~s~s~~~fn~~p~p~~v~~~~g 398 (428)
T 2j66_A 319 NYPMEYIPVREDSGRRELEKVTIAGPLCTPEDCLGKDVHVPALYPGDLVCVLNSGAYGLSFSPVHFLGHPTPIEILKRNG 398 (428)
T ss_dssp --CEEEEC---------CEEEEEECSSSSTTCEEEEEEEESCCCTTCEEEESSCSSSSGGGSCTTGGGCCCCEEEEEETT
T ss_pred CCEEEEEEECCCCCCCCCEEEEEECCCCCCCCEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 32047774047777788507999801899876765354268899999999908862356563002239999849999899
Q ss_pred EEEEEEECCCHHHHHHCCCCCHHHHHC
Q ss_conf 689998248988997308885688623
Q gi|254780371|r 397 QFHIIRPRMTFQELIELDSIPAWLQKT 423 (431)
Q Consensus 397 ~~~~ir~ret~ed~~~~~~~p~~~~~~ 423 (431)
++++||||||+||++++|+.|+.....
T Consensus 399 ~~~lirrret~ed~~~~~~~~~~~~~~ 425 (428)
T 2j66_A 399 SYELIRRKGTADDIVATQLQTESNLLF 425 (428)
T ss_dssp EEEEEECCCCHHHHHGGGC--------
T ss_pred EEEEEECCCCHHHHHHCCCCCCCCCCC
T ss_conf 899997889899998533455434322
No 7
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysine, TIM-barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A*
Probab=100.00 E-value=0 Score=669.13 Aligned_cols=397 Identities=30% Similarity=0.494 Sum_probs=351.2
Q ss_pred CCEEEECCCCHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHH
Q ss_conf 88589878429999997499789977999999999999861447978999641079999999999739928986899986
Q gi|254780371|r 8 EGSLHAENVSLEKLAHVVQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEGELR 87 (431)
Q Consensus 8 ~~~l~i~~~~l~~La~~~gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~S~~El~ 87 (431)
..++.+.+.+|.+|+++|||||||||++.|++|+++|+++ .+++||+|||+++.|++++++.|+||||+|++|++
T Consensus 7 ~~~~~l~~~~l~~l~~~~GTP~yv~d~~~l~~~~~~l~~~-----~~v~YAvKaN~~~~vl~~l~~~G~g~dvaS~~El~ 81 (425)
T 1knw_A 7 STDTDLTAENLLRLPAEFGCPVWVYDAQIIRRQIAALKQF-----DVVRFAQKACSNIHILRLMREQGVKVDSVSLGEIE 81 (425)
T ss_dssp TCSSSCCHHHHHHHHHHHCSSEEEEEHHHHHHHHHTTTTS-----SEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHCC-----CEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHH
T ss_conf 4678367999999999779988998799999999985166-----98999951178999999999849978998999999
Q ss_pred HHHHCCCCC----CCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCC
Q ss_conf 522125784----3124447754201244442068723333220246768774113344215899872377867443332
Q gi|254780371|r 88 RALAAPVPA----ERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKIS 163 (431)
Q Consensus 88 ~al~~G~~~----~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~ 163 (431)
+|+++|+++ ++|+|+||+|+.++|+.|++.|+. +++||++|+++|.++++ ..+|++|+||+++...+...+
T Consensus 82 ~al~~G~~~~~~~~~Ii~~gp~k~~~~l~~a~~~g~~-i~~ds~~el~~l~~~~~----~~~v~lRi~~~~~~~~~~~~~ 156 (425)
T 1knw_A 82 RALAAGYNPQTHPDDIVFTADVIDQATLERVSELQIP-VNAGSVDMLDQLGQVSP----GHRVWLRVNPGFGHGHSQKTN 156 (425)
T ss_dssp HHHHTTCCTTTCTTSEEEEESCCCHHHHHHHHHHTCC-EEESSHHHHHHHHHHST----TCEEEEEEECSCCSSCTTSCC
T ss_pred HHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCC-CCCHHHHHHHHHHHHCC----CCCEECCCCCCCCCCCCCCCC
T ss_conf 9998699966773427974785569999766540530-01025889999975045----453110037886655465555
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCC
Q ss_conf 23344456887111134577764156322002335564156442048999999998876531026665268806873000
Q gi|254780371|r 164 TGKKEDKFGIPIHQIHSLYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIA 243 (431)
Q Consensus 164 tg~~~sKFGi~~~~~~~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~ 243 (431)
+|...+|||++.+++.++++.++. .++++.|+|||+|||+.+.+.+. .+...++.+.+.|.++++||+|||||++
T Consensus 157 ~~~~~~~fg~~~~~~~~~~~~~~~-~~l~~~Glh~H~gS~~~~~~~~~----~~~~~~~~~~~~g~~l~~ldiGGG~~~~ 231 (425)
T 1knw_A 157 TGGENSKHGIWYTDLPAALDVIQR-HHLQLVGIHMHIGSGVDYAHLEQ----VCGAMVRQVIEFGQDLQAISAGGGLSVP 231 (425)
T ss_dssp SSSTTCCCSEEGGGHHHHHHHHHH-TTCEEEEEECCCCCTTCHHHHHH----HHHHHHHHHHHHTCCCSEEECCCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHH-CCCEEEEEEEEECCCCCHHHHHH----HHHHHHHHHHCCCCEEEEEEECCCCCCC
T ss_conf 666666554031332477899875-59258777874055443578899----9877644432046122234433663647
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCC------CCCEEEEEECCEECCCCCEEEEEEEEECCCCCCCCEEECCCCCCCCCCHHH
Q ss_conf 26654553114565556542102------453034410111203663258887640346897422005530001100111
Q gi|254780371|r 244 YHSDHRPPSSSDYASLIHQYFGN------LQCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMNDFMRPTLY 317 (431)
Q Consensus 244 y~~~~~~~~~~~~~~~i~~~~~~------~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~vD~g~~~~~~p~~~ 317 (431)
|..+..+++++.+...+...... .+++|++|||||+|++||+++|+|+++|+..+++|+++|+|+|+++++.++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~EPGR~lva~ag~lvt~V~~~k~~~~~~~~~~d~g~~~~~~~~~~ 311 (425)
T 1knw_A 232 YQQGEEAVDTEHYYGLWNAAREQIARHLGHPVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAMY 311 (425)
T ss_dssp CSTTCCCCCHHHHHHHHHHHHHHHHHHHTSCCEEEECCSHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTSCHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEEEEEEECCCEEEEEECCCCCCCCCHHHC
T ss_conf 78887787589887778899999865235524998537754003602799999899725973689977501567676662
Q ss_pred CCCCCCCCCCCCC---CCCCEEEEEEEEEECCCCCEEEEE-------EECCCCCCCCEEEEECCCCHHHHHHCCCCCCCC
Q ss_conf 0246532222346---777615899981000566665621-------005668888899996797023334027788986
Q gi|254780371|r 318 DAYHEINYIVNPA---GDRLHIHADIVGPICETGDFIALN-------RKIALPRPGDLLYIEKTGAYGAVQSGTYNSRLL 387 (431)
Q Consensus 318 ~~~~~i~~~~~~~---~~~~~~~~~i~G~~C~~~D~l~~~-------~~lp~l~~GD~l~i~~~GAY~~s~~s~fn~~p~ 387 (431)
+.+|++..+.... ...+..+++|+||||+++|+|+++ +.||++++||+|+|.|||||+++|+|+||++|+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~v~G~tC~s~D~l~~~~~~~~~~~~LP~l~~GD~l~f~~~GAYt~s~~s~Fn~~p~ 391 (425)
T 1knw_A 312 GSYHHISALAADGRSLEHAPTVETVVAGPLCESGDVFTQQEGGNVETRALPEVKAGDYLVLHDTGAYGASMSSNYNSRPL 391 (425)
T ss_dssp CCCCCEEEECTTCCCCTTCCEEEEEEECSSSSTTCBSSBCTTSCBCCEEEECCCTTCEEEEESCSSSSGGGCCCTTTCCC
T ss_pred CCCCCEEEECCCCCCCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCC
T ss_conf 86341256415665444689617999806978981785466665333547889989999997976314766174569998
Q ss_pred CEEEEEECCEEEEEEECCCHHHHHHCCCCCHH
Q ss_conf 65999988968999824898899730888568
Q gi|254780371|r 388 IPEIMVNGSQFHIIRPRMTFQELIELDSIPAW 419 (431)
Q Consensus 388 p~~v~v~~g~~~~ir~ret~ed~~~~~~~p~~ 419 (431)
|++|++++|+.++||||||+||++++|+|--|
T Consensus 392 p~~v~~~~g~~~lir~ret~~d~~~~~~~~~~ 423 (425)
T 1knw_A 392 LPEVLFDNGQARLIRRRQTIEELLALELLHHH 423 (425)
T ss_dssp CCEEEEETTEEEEEECCCCHHHHHTTTCSCC-
T ss_pred CCEEEEECCEEEEEECCCCHHHHHHCCCCCCC
T ss_conf 87899999999999788999999731721014
No 8
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomics, NPPSFA; HET: PLP; 1.70A {Thermotoga maritima MSB8}
Probab=100.00 E-value=0 Score=646.99 Aligned_cols=382 Identities=34% Similarity=0.605 Sum_probs=339.0
Q ss_pred HHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCC
Q ss_conf 99999974997899779999999999998614479789996410799999999997399289868999865221257843
Q gi|254780371|r 18 LEKLAHVVQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEGELRRALAAPVPAE 97 (431)
Q Consensus 18 l~~La~~~gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~S~~El~~al~~G~~~~ 97 (431)
|++|+++|||||||||++.|++|+++|+++|++.+++++||+|||+++.|++++++.|+|+||+|.+|+++|+++|++++
T Consensus 4 l~~la~~~GTP~yv~d~~~l~~~~~~l~~~~~~~~~~~~YAvKaN~~~~vl~~l~~~G~g~dvaS~~El~~al~~G~~~~ 83 (386)
T 2yxx_A 4 LRKVAEIHGTPTYVYFEETLRKRSRLVKEVFEGVNLLPTFAVKANNNPVLLKILREEGFGMDVVTKGELLAAKLAGVPSH 83 (386)
T ss_dssp HHHHHHHHCSSEEEEEHHHHHHHHHHHHHHTTTSCEEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCC
T ss_conf 99999965998899989999999999997457789689999600785999999998399679959999999998189975
Q ss_pred CEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12444775420124444206872333322024676877411334421589987237786744333223344456887111
Q gi|254780371|r 98 RIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQ 177 (431)
Q Consensus 98 ~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~ 177 (431)
+|+|+||+|++++++.|++.|+.++++|+.++++.+.... ....++++|+||+++.+++....+++..+|||++.++
T Consensus 84 ~ii~~~~~k~~~~l~~a~~~gv~~~~~d~~~~~~~~~~~~---~~~~~i~lri~~~~~~~~~~~~~~~~~~~~~g~~~~~ 160 (386)
T 2yxx_A 84 TVVWNGNGKSRDQMEHFLREDVRIVNVDSFEEMEIWRELN---PEGVEYFIRVNPEVDAKTHPHISTGLKKHKFGIPLED 160 (386)
T ss_dssp GEEECCSCCCHHHHHHHHHTTCCEEEECCHHHHHHHHHHC---CTTCEEEEEEECCCCTTTSHHHHHHHHHSSSSEEGGG
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH---CCCCEEEEEECCCCCCCCCCCEECCCCCCCCCCHHHH
T ss_conf 4886289899999999986397510243289999998750---3341056543688566677622137766766503555
Q ss_pred CHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHH
Q ss_conf 13457776415632200233556415644204899999999887653102666526880687300026654553114565
Q gi|254780371|r 178 IHSLYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYA 257 (431)
Q Consensus 178 ~~~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~ 257 (431)
....++.. .++++.|+|||+|||+.+++.|.++++.+.++... +.+++||+||||+++|...... +....
T Consensus 161 ~~~~~~~~---~~~~l~GlhfHvgS~~~~~~~~~~a~~~~~~~~~~-----~~~~~idiGGGf~~~~~~~~~~--~~~~~ 230 (386)
T 2yxx_A 161 LDSFMERF---RSMNIRGLHVHIGSQITRVEPFVEAFSKVVRASER-----YGFEEINIGGGWGINYSGEELD--LSSYR 230 (386)
T ss_dssp HHHHHHHH---TTSCEEEEECCCCSSBCCSHHHHHHHHHHHHHHHH-----HTCSEEECCCCBCCCSSSCCCC--HHHHH
T ss_pred HHHHHHHH---HCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH-----CCCCEEEECCCCCCCCCCCCCC--HHHHH
T ss_conf 56899874---31780489874486544554066799999998630-----5985663467457777764321--67899
Q ss_pred HHHHHHHCCCCCEEEEEECCEECCCCCEEEEEEEEECCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCCEEE
Q ss_conf 55654210245303441011120366325888764034689742200553000110011102465322223467776158
Q gi|254780371|r 258 SLIHQYFGNLQCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMNDFMRPTLYDAYHEINYIVNPAGDRLHIH 337 (431)
Q Consensus 258 ~~i~~~~~~~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~vD~g~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~ 337 (431)
..+.+.. ...++|++|||||+|++||+++|+|+++|++.+++|+++|+|++++++|+++++++++..... .....+
T Consensus 231 ~~~~~~~-~~~~~li~EPGR~lva~~g~lvt~V~~~k~~~~~~~~i~D~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 306 (386)
T 2yxx_A 231 EKVVPDL-KRFKRVIVEIGRYIVAPSGYLLLRVVLVKRRHNKAFVVVDGGMNVLIRPALYSAYHRIFVLGK---QGKEMR 306 (386)
T ss_dssp HHTGGGG-TTCSEEEEEECHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTCCHHHHTCCCCCEEETTC---CCCSEE
T ss_pred HHHHHHH-CCCCEEEECCCHHHHHCCEEEEEEEEEEEECCCCEEEEECCCHHHCCCCHHHCCCCEEEECCC---CCCCCE
T ss_conf 9998762-558749987712031185389999999731498279999982120357354135420574145---677562
Q ss_pred EEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEE-CCEEEEEEECCCHHHHHHCCCC
Q ss_conf 999810005666656210056688888999967970233340277889866599998-8968999824898899730888
Q gi|254780371|r 338 ADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMVN-GSQFHIIRPRMTFQELIELDSI 416 (431)
Q Consensus 338 ~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~s~~s~fn~~p~p~~v~v~-~g~~~~ir~ret~ed~~~~~~~ 416 (431)
++|+||||+++|+|++++.||++++||+|+|.+||||+++|+|+||++|+|++|+++ +|+.++||+|||+||+++++++
T Consensus 307 ~~v~G~tC~~~D~l~~~~~lP~l~~GD~l~f~~~GAY~~~~~~~Fn~~~~P~~v~v~~~g~~~~ir~~et~ed~~~~~i~ 386 (386)
T 2yxx_A 307 ADVVGPLCESGDVIAYDRELPEVEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVRENGRISLIRRRETEMDIFKDVVM 386 (386)
T ss_dssp EEEECSSSSTTCEEEEEEEESCCCTTCEEEESSCSSSSGGGCCCTTTCCCCEEEEECTTSCEEEEECCCCHHHHTTTCCC
T ss_pred EEEECCCCCCCCEECCCCCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCCCCEEEEECCCEEEEEECCCCHHHHHHCCCC
T ss_conf 79988678988888345517989999999994986104755366568998849999769849999768999999740429
No 9
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyamines, parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A*
Probab=100.00 E-value=0 Score=653.71 Aligned_cols=391 Identities=24% Similarity=0.365 Sum_probs=348.5
Q ss_pred CCCCE--EECCEEEECCCCHHHHHHHC---------CCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHH
Q ss_conf 98716--66885898784299999974---------99789977999999999999861447978999641079999999
Q gi|254780371|r 1 MSAFK--YFEGSLHAENVSLEKLAHVV---------QTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIK 69 (431)
Q Consensus 1 m~~~~--~~~~~l~i~~~~l~~La~~~---------gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~ 69 (431)
|++|. ..|.++..++.+++++.++. +|||||||++.|++|+++|+++|| +++++||+|||+++.|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~pfyv~d~~~i~~~~~~~~~~~P--~v~~~YAvKaN~~~~il~ 78 (424)
T 7odc_A 1 MSSFTKDEFDCHILDEGFTAKDILDQKINEVSSSDDKDAFYVADLGDILKKHLRWLKALP--RVTPFYAVKCNDSRAIVS 78 (424)
T ss_dssp -CEEEETTEEEEEECSSCCHHHHHHHHHC------CCCCEEEEEHHHHHHHHHHHHHHCT--TEEEEEEGGGCCCHHHHH
T ss_pred CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHCC--CCEEEEEEEECCCHHHHH
T ss_conf 997776645268823886199999999876324689987899589999999999998689--987998851089899999
Q ss_pred HHHHCCCCEEEECHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 99973992898689998652212578431244477542012444420687233332202467687741133442158998
Q gi|254780371|r 70 TLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFR 149 (431)
Q Consensus 70 ~l~~~G~g~dv~S~~El~~al~~G~~~~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lR 149 (431)
++++.|+|+||+|.+|+++|+++|+++++|+|+||+|++++|+.|++.|+.++++||++||+++.+.+ +..++++|
T Consensus 79 ~l~~~G~g~dvaS~~El~~al~~G~~~~~Iv~~gp~K~~~~i~~A~~~gv~~i~~ds~~EL~~l~~~~----~~~~v~~R 154 (424)
T 7odc_A 79 TLAAIGTGFDCASKTEIQLVQGLGVPAERVIYANPCKQVSQIKYAASNGVQMMTFDSEIELMKVARAH----PKAKLVLR 154 (424)
T ss_dssp HHHHHTCEEEECSHHHHHHHHHTTCCGGGEEECCSSCCHHHHHHHHHTTCCEEEECSHHHHHHHHHHC----TTCEEEEE
T ss_pred HHHHCCCCEEEECHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHC----CCCCCCEE
T ss_conf 99984992999799999999986979040999799999999999998599578878999999999855----35775236
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 72377867443332233444568871111345777641563220023355641564420489999999988765310266
Q gi|254780371|r 150 VNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGH 229 (431)
Q Consensus 150 inp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~ 229 (431)
++++.. ..+++.+||||++.+++.++++.++.. ++++.|+|||+|||+.+++.|.++++.+.++++.+++.|+
T Consensus 155 i~~~~~------~~~~~~~skFG~~~~~~~~~~~~~~~~-~l~~~Glh~HvgS~~~d~~~~~~~~~~~~~~~~~~~~~g~ 227 (424)
T 7odc_A 155 IATDDS------KAVCRLSVKFGATLKTSRLLLERAKEL-NIDVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGF 227 (424)
T ss_dssp BCC-----------------CCCBCHHHHHHHHHHHHHT-TCEEEEEECCCCSSCCCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EECCCC------CCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 514875------455676677885789999999987645-9728899997288877417799888888899999997198
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCC-----CCCEEEEEECCEECCCCCEEEEEEEEECCCCCCC----
Q ss_conf 6526880687300026654553114565556542102-----4530344101112036632588876403468974----
Q gi|254780371|r 230 NIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQYFGN-----LQCKIILEPGRFLVADVGILVTKVISIKKSADKT---- 300 (431)
Q Consensus 230 ~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~~~~~-----~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~---- 300 (431)
++++||+|||||++|.. ++++++++..+++.+.+ .+++|++|||||+|++||+++|+|+++|...+++
T Consensus 228 ~~~~ldiGGGf~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~li~EPGR~lva~ag~lvt~V~~~K~~~~~~~~~~ 304 (424)
T 7odc_A 228 SMHLLDIGGGFPGSEDT---KLKFEEITSVINPALDKYFPSDSGVRIIAEPGRYYVASAFTLAVNIIAKKTVWKEQPGSD 304 (424)
T ss_dssp CCCEEECCCCCCCSSSS---SSCHHHHHHHHHHHHHHHSCGGGTCEEEECCSHHHHGGGEEEEEEEEEEEEEC-------
T ss_pred CCCEEEECCCCCCCCCC---CCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHCCCEEEEEEEEEEEECCCCCCCC
T ss_conf 73067736876776666---410577888899999987330689649977972301116069999999998325333213
Q ss_pred ----------CEEECCCCCCCCCCHHHCCCCCCCCCCCC-CCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEE
Q ss_conf ----------22005530001100111024653222234-6777615899981000566665621005668888899996
Q gi|254780371|r 301 ----------FVILDVAMNDFMRPTLYDAYHEINYIVNP-AGDRLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIE 369 (431)
Q Consensus 301 ----------~~~vD~g~~~~~~p~~~~~~~~i~~~~~~-~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~ 369 (431)
|+.+|+|+++..+|.+|+++|+..++... ..+....+++|+||+|+++|+|++++.||++++||+|+|.
T Consensus 305 ~~~~~~~~~~~~~v~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~Gp~C~~~D~l~~~~~LP~l~~GD~l~~~ 384 (424)
T 7odc_A 305 DEDESNEQTFMYYVNDGVYGSFNCILYDHAHVKALLQKRPKPDEKYYSSSIWGPTCDGLDRIVERCNLPEMHVGDWMLFE 384 (424)
T ss_dssp ------CCEEEEEESCCTTTTTHHHHHSCCCCCCEESSCCCTTCCEEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEEC
T ss_pred CCCCCCCCEEEEEECCCCCCCHHHHHHCCCCCEEEECCCCCCCCCEEEEEEEECCCCCCCEECCCCCCCCCCCCCEEEEC
T ss_conf 44344563589998665466503456424550365446888878777899997585888788645467899999999984
Q ss_pred CCCCHHHHHHCCCCCCCCCEEEEEEC-CEEEEEEECCCH
Q ss_conf 79702333402778898665999988-968999824898
Q gi|254780371|r 370 KTGAYGAVQSGTYNSRLLIPEIMVNG-SQFHIIRPRMTF 407 (431)
Q Consensus 370 ~~GAY~~s~~s~fn~~p~p~~v~v~~-g~~~~ir~ret~ 407 (431)
+||||+++|+|+||++|+|++|++.+ +.+++||+||||
T Consensus 385 ~~GAY~~~~~s~fN~~~~P~~~~v~~~~~~~~ir~~et~ 423 (424)
T 7odc_A 385 NMGAYTVAAASTFNGFQRPNIYYVMSRPMWQLMKQIQSH 423 (424)
T ss_dssp SCCSSSGGGCCCGGGCCCCEEEEEEEHHHHHHHC-----
T ss_pred CCCCHHHHHCCCCCCCCCCCEEEEEECCCEEEEEECCCC
T ss_conf 988412765564579999968999968965999946779
No 10
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens}
Probab=100.00 E-value=0 Score=644.40 Aligned_cols=386 Identities=24% Similarity=0.338 Sum_probs=336.9
Q ss_pred EEECCCCHHHHH----HHC-----CCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 898784299999----974-----99789977999999999999861447978999641079999999999739928986
Q gi|254780371|r 11 LHAENVSLEKLA----HVV-----QTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIV 81 (431)
Q Consensus 11 l~i~~~~l~~La----~~~-----gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~ 81 (431)
..-++....+++ +++ +|||||||++.|++|+++|+++||+ ++++||+|||+++.|++++++.|+|+||+
T Consensus 23 ~~~~~~~~~~~~~~~i~~~~~~~~~~pfyv~D~~~i~~~~~~~~~~~P~--v~~~YAvKaN~~~~il~~l~~~G~G~Dva 100 (471)
T 2oo0_A 23 FLDEGFTAKDILDQKINEVSSSDDKDAFYVADLGDILKKHLRWLKALPR--VTPFYAVKCNDSKAIVKTLAATGTGFDCA 100 (471)
T ss_dssp EECTTCCHHHHHHHHHHHTTTSSCCCCEEEEEHHHHHHHHHHHHHHCTT--EEEEEEGGGCCCHHHHHHHHHHTCEEEEC
T ss_pred ECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHCCC--CEEEEEEEECCCHHHHHHHHHCCCEEEEE
T ss_conf 5257520999999999974245799877997899999999999986899--77987751089899999999849949985
Q ss_pred CHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCC
Q ss_conf 89998652212578431244477542012444420687233332202467687741133442158998723778674433
Q gi|254780371|r 82 SEGELRRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKK 161 (431)
Q Consensus 82 S~~El~~al~~G~~~~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~ 161 (431)
|.+|+++|+++|+++++|+|+||+|++++|+.|+++|+.+|++||++||++|.+.. +..+|++|+||+..
T Consensus 101 S~~El~~al~aG~~~~~Iif~gp~K~~~el~~A~~~gv~~i~~dS~~EL~~i~~~~----~~~~v~lRi~~~~~------ 170 (471)
T 2oo0_A 101 SKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAH----PKAKLVLRIATDDS------ 170 (471)
T ss_dssp SHHHHHHHHHTTCCGGGEEECCSSCCHHHHHHHHHTTCCEEEECSHHHHHHHHHHC----TTCEEEEEECCCCT------
T ss_pred CHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHC----CCCCEECCCCCCCC------
T ss_conf 99999999976989452999799999999999998699799968989999999860----26842034567864------
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCC
Q ss_conf 32233444568871111345777641563220023355641564420489999999988765310266652688068730
Q gi|254780371|r 162 ISTGKKEDKFGIPIHQIHSLYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLG 241 (431)
Q Consensus 162 ~~tg~~~sKFGi~~~~~~~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~ 241 (431)
..+++..+|||++.+++..+++.++.. ++++.|||||+|||+.+++.|.++++.+..+++.+++.|+++++||+|||||
T Consensus 171 ~~~~~~~~kFG~~~~~~~~~~~~~~~~-~l~~~GlH~HiGS~~~d~~~~~~~i~~~~~~~~~~~~~g~~~~~ldiGGGf~ 249 (471)
T 2oo0_A 171 KAVCRLSVKFGATLRTSRLLLERAKEL-NIDVVGVSFHVGSGCTDPETFVQAISDARCVFDMGAEVGFSMYLLDIGGGFP 249 (471)
T ss_dssp TSSBCCTTTSCBCHHHHHHHHHHHHHT-TCEEEEEEECCCBSCCCTHHHHHHHHHHHHHHHHHHHHTCCCCEEECCCCCC
T ss_pred CCCEECCCCCCCCHHHHHHHHHHHHHC-CCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 330113667664489999999988755-9518999997588767728899999987788988876086533322477756
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCC-----CCCEEEEEECCEECCCCCEEEEEEEEECCCC--------------CCCCE
Q ss_conf 0026654553114565556542102-----4530344101112036632588876403468--------------97422
Q gi|254780371|r 242 IAYHSDHRPPSSSDYASLIHQYFGN-----LQCKIILEPGRFLVADVGILVTKVISIKKSA--------------DKTFV 302 (431)
Q Consensus 242 i~y~~~~~~~~~~~~~~~i~~~~~~-----~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~--------------~~~~~ 302 (431)
++|. .+++++.++..+...+.+ .++++++|||||+|++||+++|+|+++|... ...|+
T Consensus 250 ~~~~---~~~~~e~~~~~i~~~~~~~~~~~~~~~li~EPGR~lva~ag~lvt~V~~~K~~~~~~~~~~~~~~~~~~~~~~ 326 (471)
T 2oo0_A 250 GSED---VKLKFEEITGVINPALDKYFPSDSGVRIIAEPGRYYVASAFTLAVNIIAKKIVLKEQTGSDDEDESSEQTFMY 326 (471)
T ss_dssp SSSS---SSSCHHHHHHHHHHHHHHHSCGGGTCEEEECCSHHHHGGGEEEEEEEEEEEEEC-------------CCEEEE
T ss_pred CCCC---CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEE
T ss_conf 5566---6556788999998888875024789579961771576411899999999997313223434434566734899
Q ss_pred EECCCCCCCCCCHHHCCCCCCCCCCCC-CCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHCC
Q ss_conf 005530001100111024653222234-6777615899981000566665621005668888899996797023334027
Q gi|254780371|r 303 ILDVAMNDFMRPTLYDAYHEINYIVNP-AGDRLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQSGT 381 (431)
Q Consensus 303 ~vD~g~~~~~~p~~~~~~~~i~~~~~~-~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~s~~s~ 381 (431)
++|+|+++.++|++|+++|+..++... ..+.+..+++|+||+|+++|+|++++.||++++||+|+|.++|||+++|+|+
T Consensus 327 ~i~~G~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~Gp~C~s~D~l~~~~~LP~l~~GD~l~~~~~GAY~~s~ss~ 406 (471)
T 2oo0_A 327 YVNDGVYGSFNCILYDHAHVKPLLQKRPKPDEKYYSSSIWGPTCDGLDRIVERCDLPEMHVGDWMLFENMGAYTVAAAST 406 (471)
T ss_dssp EESCCTTTGGGHHHHSCCCCCCEESSCCCTTCCEEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEECSCCSSSGGGCCC
T ss_pred EECCCCCCCHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCEEEECCCCCCCCCCCEEEECCCCCCHHHHCCC
T ss_conf 98754455313455303650245436778778776899995587888889455077889999999992985512766476
Q ss_pred CCCCCCCEEEEEEC-CEEEEEEECCCHHHHHH
Q ss_conf 78898665999988-96899982489889973
Q gi|254780371|r 382 YNSRLLIPEIMVNG-SQFHIIRPRMTFQELIE 412 (431)
Q Consensus 382 fn~~p~p~~v~v~~-g~~~~ir~ret~ed~~~ 412 (431)
||++|+|++|+|.+ +.+++||||||+|.+..
T Consensus 407 fN~~~~P~~v~v~~~~~~~lirr~e~~d~~~~ 438 (471)
T 2oo0_A 407 FNGFQRPTIYYVMSGPAWQLMQQFQNPDFPPE 438 (471)
T ss_dssp GGGCCCCEEEEEEEHHHHHHHHHHCC------
T ss_pred CCCCCCCCEEEEEECCCEEEEECCCCCCCHHH
T ss_conf 77999980899993895799942778756187
No 11
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus}
Probab=100.00 E-value=0 Score=646.02 Aligned_cols=386 Identities=20% Similarity=0.291 Sum_probs=337.3
Q ss_pred EEEECCCCHHHHHHHC--------CCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 5898784299999974--------99789977999999999999861447978999641079999999999739928986
Q gi|254780371|r 10 SLHAENVSLEKLAHVV--------QTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIV 81 (431)
Q Consensus 10 ~l~i~~~~l~~La~~~--------gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~ 81 (431)
.|..+|+++.+|+++| +|||||||++.|++|+++|+++||+ ++++||+|||+++.|++++++.|+|+||+
T Consensus 13 ~l~~~~~~~~~l~~~~~~~~~~~~~~pfyv~d~~~i~~~~~~~~~~~p~--v~~~YAvKaN~~~~il~~l~~~G~G~Dva 90 (448)
T 3btn_A 13 GLLDEGTNLGNVIDNYVYEHTLTGKNAFFVGDLGKIVKKHSQWQTVVAQ--IKPFYTVKCNSTPAVLEILAALGTGFACS 90 (448)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHSSCCCEEEEEHHHHHHHHHHHHHHCTT--EEEEEEGGGCCCHHHHHHHHHHTCEEEES
T ss_pred EEEECCCCHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHCCC--CEEEEEECCCCCHHHHHHHHHCCCCEEEE
T ss_conf 4441897699999998764146789977990599999999999987899--86887733489899999999819939997
Q ss_pred CHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCC
Q ss_conf 89998652212578431244477542012444420687233332202467687741133442158998723778674433
Q gi|254780371|r 82 SEGELRRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKK 161 (431)
Q Consensus 82 S~~El~~al~~G~~~~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~ 161 (431)
|.+|+++|+++|++|++|+|+||+|++++|+.|++.|+.++++||++||++|.+.+ +..++++||+++...
T Consensus 91 S~~El~~al~~G~~~~~Iif~gp~Ks~~~l~~A~~~Gv~~~~~Ds~~eL~~i~~~~----~~~~v~~rI~~~~~~----- 161 (448)
T 3btn_A 91 SKNEMALVQELGVSPENIIFTSPCKQVSQIKYAAKVGVNIMTCDNEIELKKIARNH----PNAKVLLHIATEDNI----- 161 (448)
T ss_dssp SHHHHHHHHHTTCCGGGEEECCSSCCHHHHHHHHHHTCCEEEECSHHHHHHHHHHC----TTCEEEEEBCCCC-------
T ss_pred CHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHH----CCCCCEEEECCCCCC-----
T ss_conf 99999999986969002999089899999999998699759989999999999862----358801211244433-----
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCC
Q ss_conf 32233444568871111345777641563220023355641564420489999999988765310266652688068730
Q gi|254780371|r 162 ISTGKKEDKFGIPIHQIHSLYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLG 241 (431)
Q Consensus 162 ~~tg~~~sKFGi~~~~~~~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~ 241 (431)
.++...||||++.+++.++++.+++. ++++.|+|||+|||+.+++.|.++++.+.++++.+++.|+++++|||||||+
T Consensus 162 -~~~~~~sKFGi~~~~~~~~~~~~k~~-~l~l~Glh~H~GS~~~d~~~~~~~i~~~~~~~~~~~~~g~~~~~idiGGGf~ 239 (448)
T 3btn_A 162 -GGEDGNMKFGTTLKNCRHLLECAKEL-DVQIIGVKFHVSSACKEYQVYVHALSDARCVFDMAGEFGFTMNMLDIGGGFT 239 (448)
T ss_dssp -------CCCCBCHHHHHHHHHHHHHH-TCEEEEEECCCCTTCCCTTHHHHHHHHHHHHHHHHHHTTCCCCEEECCSCCC
T ss_pred -CCCCCCCCCCCCHHHHHHHHHHHHCC-CCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf -32224666687778999887776228-8178564554136546548799999999999999998299536762157666
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCC-----CCCEEEEEECCEECCCCCEEEEEEEEECCCCCCCCEE-ECCC------CC
Q ss_conf 0026654553114565556542102-----4530344101112036632588876403468974220-0553------00
Q gi|254780371|r 242 IAYHSDHRPPSSSDYASLIHQYFGN-----LQCKIILEPGRFLVADVGILVTKVISIKKSADKTFVI-LDVA------MN 309 (431)
Q Consensus 242 i~y~~~~~~~~~~~~~~~i~~~~~~-----~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~-vD~g------~~ 309 (431)
++| ++++.++..++..+.. .+++|++|||||+|++||+++|+|+++|+..+++|.+ ++++ ++
T Consensus 240 ~~~------~~~~~~~~~i~~~~~~~~~~~~~~~li~EPGR~lva~ag~lvt~V~~~K~~~~~~~~~~v~~~~~~~~~~~ 313 (448)
T 3btn_A 240 GTE------IQLEEVNHVISPLLDIYFPEGSGIQIISEPGSYYVSSAFTLAVNIIAKKVVENDKFSSGVEKNGSDEPAFV 313 (448)
T ss_dssp SCH------HHHHHHHHHHHHHHHHHSCTTSCCEEEECCSHHHHTTTEEEEEEEEEEEEC-----------------CEE
T ss_pred CCC------CCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEECCEEEEEEEEEEEEECCCCCEEEEEECCCCCCCCCE
T ss_conf 566------76566889998877653320589769967986233051899999999997278624787404666562102
Q ss_pred CCCCCHHHCCCCCCCC--------CC-CCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHC
Q ss_conf 0110011102465322--------22-34677761589998100056666562100566888889999679702333402
Q gi|254780371|r 310 DFMRPTLYDAYHEINY--------IV-NPAGDRLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQSG 380 (431)
Q Consensus 310 ~~~~p~~~~~~~~i~~--------~~-~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~s~~s 380 (431)
.++++++|+++++... +. ....+.+..+++|+||+|+++|+|++++.||++++||+|+|.++|||+++|+|
T Consensus 314 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Gp~C~~~D~l~~~~~LP~l~~GD~L~~~~~GAY~~~~~s 393 (448)
T 3btn_A 314 YYMNDGVYGSFASKLSEDLNTIPEVHKKYKEDEPLFTSSLWGPSCDELDQIVESCLLPELNVGDWLIFDNMGADSFHEPS 393 (448)
T ss_dssp EEESCCTTTTTGGGGC----CCCEECCC-----CEEEEEEECTTCSTTCEEEEEEEEECCCTTCEEEESSCCSSCCCCCC
T ss_pred EEECHHHHHHHHHHHHHCCCCCEEECCCCCCCCCEEEEEEEECCCCCCCEECCCCCCCCCCCCCEEEECCCCCCHHHHCC
T ss_conf 54361443024666542256401203566667875789999307788888880658889999999999798747186658
Q ss_pred CCCCCCCCEEEEEE-CCEEEEEEECCCHHHHHHCC
Q ss_conf 77889866599998-89689998248988997308
Q gi|254780371|r 381 TYNSRLLIPEIMVN-GSQFHIIRPRMTFQELIELD 414 (431)
Q Consensus 381 ~fn~~p~p~~v~v~-~g~~~~ir~ret~ed~~~~~ 414 (431)
|||++|+|++|++. ++++++|||||++.|.+.++
T Consensus 394 ~fN~~~~P~~~~v~~~~~~~~ir~~~~~~d~~~~~ 428 (448)
T 3btn_A 394 AFNDFQRPAIYFMMSFSDWYEMQDAGITSDAMMKN 428 (448)
T ss_dssp GGGTTCCCEEEEEEEHHHHHHHHHTTGGGSGGGTT
T ss_pred CCCCCCCCEEEEEEECCEEEEEEECCCCHHHHHHC
T ss_conf 77899998189999388478987279557889608
No 12
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A*
Probab=100.00 E-value=0 Score=637.96 Aligned_cols=382 Identities=24% Similarity=0.341 Sum_probs=330.6
Q ss_pred EEECCCCHHHHHHH--------CCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 89878429999997--------4997899779999999999998614479789996410799999999997399289868
Q gi|254780371|r 11 LHAENVSLEKLAHV--------VQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIVS 82 (431)
Q Consensus 11 l~i~~~~l~~La~~--------~gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~S 82 (431)
.++++++.++|..+ +||||||||++.|++|+++|+++|| +.+++||+|||+++.|++++++.|+|+||+|
T Consensus 14 ~~~~~~~~~~l~~~~~~~~~~~~GTP~yv~d~~~i~~~~~~~~~a~p--~~~~~YAvKAN~~~~il~~l~~~G~g~dv~S 91 (425)
T 1f3t_A 14 RFLEGFNTRDALCKKISMNTCDEGDPFFVADLGDIVRKHETWKKCLP--RVTPFYAVKCNDDWRVLGTLAALGTGFDCAS 91 (425)
T ss_dssp CBCCCSSHHHHHHHHCC------CCCEEEEEHHHHHHHHHHHHHHCT--TEEEEEEGGGCCCHHHHHHHHHTTCEEEECS
T ss_pred EEECCCCHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHCC--CCEEEEEECCCCCHHHHHHHHHCCCEEEEEC
T ss_conf 55337746677876542125789995799589999999999998689--9879998634898999999998299399849
Q ss_pred HHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCC
Q ss_conf 99986522125784312444775420124444206872333322024676877411334421589987237786744333
Q gi|254780371|r 83 EGELRRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKI 162 (431)
Q Consensus 83 ~~El~~al~~G~~~~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~ 162 (431)
.+|+++|+++|+++++|+|+||+|++++|+.|++.|+.++++||++|++++.+.. ...++++|++|... .
T Consensus 92 ~gEl~~al~~G~~~~~Iv~~gp~Ks~~el~~a~~~gi~~~~~ds~~el~~i~~~~----~~~~v~~ri~~~~~------~ 161 (425)
T 1f3t_A 92 NTEIQRVRGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTH----PKAKMVLRISTDDS------L 161 (425)
T ss_dssp HHHHHHHHHTTCCGGGEEECCSSCCHHHHHHHHHTTCCEEEECSHHHHHHHHHHC----TTCEEEEEBCC----------
T ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCCEECCHHHHHHHHHHHHHC----CCCCEEEEEECCCC------C
T ss_conf 9999999976979674999689899999999998397471278899999998644----56762678504554------3
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCC
Q ss_conf 22334445688711113457776415632200233556415644204899999999887653102666526880687300
Q gi|254780371|r 163 STGKKEDKFGIPIHQIHSLYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGI 242 (431)
Q Consensus 163 ~tg~~~sKFGi~~~~~~~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i 242 (431)
.+++..||||++.+++.++++.++.. ++++.|||||+|||+.+++.|.++++.+..+++.+++.|+.+++||+|||||+
T Consensus 162 ~~~~~~skFG~~~~~~~~~l~~~~~~-~l~l~GlH~H~gS~~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~ldiGGG~~~ 240 (425)
T 1f3t_A 162 ARCRLSVKFGAKVEDCRFILEQAKKL-NIDVTGVSFHVGSGSTDASTFAQAISDSRFVFDMGTELGFNMHILDIGGGFPG 240 (425)
T ss_dssp ------CCSCBCHHHHHHHHHHHHHT-TCEEEEEECCCCSCCSCTHHHHHHHHHHHHHHHHHHHTTCCCCEEECCCCCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCC
T ss_conf 33557777766578889999887632-64699999887888774588999999999998888870995214311666576
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCC-----CCCEEEEEECCEECCCCCEEEEEEEEECCCCCCCCEEE-------------
Q ss_conf 026654553114565556542102-----45303441011120366325888764034689742200-------------
Q gi|254780371|r 243 AYHSDHRPPSSSDYASLIHQYFGN-----LQCKIILEPGRFLVADVGILVTKVISIKKSADKTFVIL------------- 304 (431)
Q Consensus 243 ~y~~~~~~~~~~~~~~~i~~~~~~-----~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~v------------- 304 (431)
+|.. ++++++|++.+.+.+.+ .+++|++|||||+|++||+++|+|+++|++.+..+.+.
T Consensus 241 ~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~li~EPGR~lva~ag~llt~V~~~K~~~g~~~~v~~~~~~~~~~~~~~ 317 (425)
T 1f3t_A 241 TRDA---PLKFEEIAGVINNALEKHFPPDLKLTIVAEPGRYYVASAFTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYY 317 (425)
T ss_dssp STTS---SSCHHHHHHHHHHHHHHHSCCCTTCEEEECCSHHHHGGGEEEEEEEEEEEEC---------------CCEEEE
T ss_pred CCCC---CCHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHEEEEEEEEEEEEEECCCEEEEEECCCCCCCCEEEEE
T ss_conf 6678---6214678888777665401456782799815067530247999999999964880688740334563135898
Q ss_pred -CCCCCCCCCCHHHCCCCCCCCCCC-CCCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHCCC
Q ss_conf -553000110011102465322223-467776158999810005666656210056688888999967970233340277
Q gi|254780371|r 305 -DVAMNDFMRPTLYDAYHEINYIVN-PAGDRLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQSGTY 382 (431)
Q Consensus 305 -D~g~~~~~~p~~~~~~~~i~~~~~-~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~s~~s~f 382 (431)
|.|++...++++|++.+....... ...+....+++|+||+|+++|+|++++.||++++||+|+|.|||||+++|+|+|
T Consensus 318 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Gp~C~s~D~l~~~~~Lp~l~~GD~l~~~~~GAY~~s~ss~f 397 (425)
T 1f3t_A 318 VNDGVYGSFNCILYDHAVVRPLPQREPIPNEKLYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFEDMGAYTVVGTSSF 397 (425)
T ss_dssp ESCCTTTGGGHHHHSCCCCCCEECSCCCTTCCEEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEECSCCSSSGGGCCCG
T ss_pred ECCCCCCCCCHHHCCCCCEECCCCCCCCCCCCEEEEEEEECCCCCCCEECCCCCCCCCCCCCEEEECCCCHHHHHHCCCC
T ss_conf 41566775131112553110135668888887778999922878787886454888899999999959684348662856
Q ss_pred CCCCCCEEEEEECC-EEEEEEECCCHH
Q ss_conf 88986659999889-689998248988
Q gi|254780371|r 383 NSRLLIPEIMVNGS-QFHIIRPRMTFQ 408 (431)
Q Consensus 383 n~~p~p~~v~v~~g-~~~~ir~ret~e 408 (431)
|++|+|++|++.+| +.++||+|||+|
T Consensus 398 n~~~~P~~v~v~~g~~~~~iR~ret~e 424 (425)
T 1f3t_A 398 NGFQSPTIYYVVSGLPDHVVRELKSQK 424 (425)
T ss_dssp GGCCCCEEEEECCSCSTTHHHHHCC--
T ss_pred CCCCCCEEEEEEECCCEEEEECCCCCC
T ss_conf 699998099999199469986677778
No 13
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus CMCP6} PDB: 2plk_A*
Probab=100.00 E-value=0 Score=634.69 Aligned_cols=379 Identities=22% Similarity=0.341 Sum_probs=329.7
Q ss_pred EEECCEEEECCCCH-HHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECH
Q ss_conf 66688589878429-99999749978997799999999999986144797899964107999999999973992898689
Q gi|254780371|r 5 KYFEGSLHAENVSL-EKLAHVVQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSE 83 (431)
Q Consensus 5 ~~~~~~l~i~~~~l-~~La~~~gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~S~ 83 (431)
++....|..|.+.+ +++++||||||||||++.|++|+++|+++|+ +.+++||+|||+++.|++++.++|+|+||+|.
T Consensus 32 ~~~~~~~~~~~~~l~~~~~e~~GTP~yV~d~~~l~~n~~~l~~af~--~~~i~YAvKAN~~~~il~~l~~~G~g~dv~S~ 109 (419)
T 2plj_A 32 SLTSPVLSAEEIHLIEASVEQFGAPLLLLDCDVIRQQYRALKNALP--NVTLHYALKPLPHPVVVRTLLAEGASFDLATT 109 (419)
T ss_dssp ----CCCCHHHHHHHHHHHHHHCSSEEEEEHHHHHHHHHHHHHHST--TEEEEEESTTCCCHHHHHHHHHHTCEEEECSH
T ss_pred CCCCCEEECCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCC--CCEEEEEEECCCCHHHHHHHHHCCCCEEEECH
T ss_conf 5465526645257899998722998899889999999999998689--98899997328869999999983995899799
Q ss_pred HHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCC
Q ss_conf 99865221257843124447754201244442068723333220246768774113344215899872377867443332
Q gi|254780371|r 84 GELRRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKIS 163 (431)
Q Consensus 84 ~El~~al~~G~~~~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~ 163 (431)
+|+++|+++|+++++|+|+||+|++++|+.|+++|+.++++||++|++++...+++.+..++|.+|.++ .
T Consensus 110 ~El~~al~aG~~~~~Ii~~gp~Ks~eel~~Al~~gv~~~~vDs~~el~~l~~~a~~~~~~iri~~~~~~----------~ 179 (419)
T 2plj_A 110 GEVELVASEGVPADLTIHTHPIKRDADIRDALAYGCNVFVVDNLNELEKFKAYRDDVELLVRLSFRNSE----------A 179 (419)
T ss_dssp HHHHHHHHTTCCGGGEEECCSSCCHHHHHHHHHHTCCEEEECSHHHHHTTGGGTTTCEEEEEBCC---------------
T ss_pred HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCEEEEECCCCC----------C
T ss_conf 999999975969132898999887476999997498467403287999998752013420123114653----------3
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC-CCCCCCEEEECCCCCC
Q ss_conf 233444568871111345777641563220023355641564420489999999988765310-2666526880687300
Q gi|254780371|r 164 TGKKEDKFGIPIHQIHSLYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRS-NGHNIQHIDVGGGLGI 242 (431)
Q Consensus 164 tg~~~sKFGi~~~~~~~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ldiGGGf~i 242 (431)
++..++|||++.+++.++++.++. .++++.|||||+|||+.+.+.|.++++.+.+++.++.+ .+..+++||+|||||+
T Consensus 180 ~~~~~~kfG~~~~~~~~~~~~~~~-~~l~l~GiH~H~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~idiGGG~~i 258 (419)
T 2plj_A 180 FADLSKKFGCSPEQALVIIETAKE-WNIRIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPV 258 (419)
T ss_dssp ----CCCSCBCHHHHHHHHHHHHH-TTCEEEEEECCCCTTCCCTHHHHHHHHHHHHHHHHHHHTTCCCCCEEECCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHH-CCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCC
T ss_conf 333578777689999999999985-7995778888646776784125779999998764200102456425731798763
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCC--CCEEEEEECCEECCCCCEEEEEEEEECCCCCCCCEEECCCCCCCCCCHHHCCC
Q ss_conf 0266545531145655565421024--53034410111203663258887640346897422005530001100111024
Q gi|254780371|r 243 AYHSDHRPPSSSDYASLIHQYFGNL--QCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMNDFMRPTLYDAY 320 (431)
Q Consensus 243 ~y~~~~~~~~~~~~~~~i~~~~~~~--~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~vD~g~~~~~~p~~~~~~ 320 (431)
+|..++ .+++.+++.+.+.++.. +++|++|||||+|++||+++++|+++|+..+++|+++|+|++++++|.++..+
T Consensus 259 ~y~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~EPGR~lva~ag~lvt~V~~~k~~~~~~~~~vd~g~~~~~~~~~~~~~ 336 (419)
T 2plj_A 259 NYTQQV--MPIDQFCAPINEALSLLPETVHVLAEPGRFICAPAVTSVASVMGQAEREGQIWYYLDDGIYGSFSGLMFDDA 336 (419)
T ss_dssp CSSSCC--CCHHHHHHHHHHHHTTSCTTCEEEECCCHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTGGGHHHHSCC
T ss_pred CCCCCC--CCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCEEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHCCCC
T ss_conf 565567--898999998899876404674421377265140243689999999963883478855751245673441366
Q ss_pred -CCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECC---
Q ss_conf -6532222346777615899981000566665621005668888899996797023334027788986659999889---
Q gi|254780371|r 321 -HEINYIVNPAGDRLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMVNGS--- 396 (431)
Q Consensus 321 -~~i~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~s~~s~fn~~p~p~~v~v~~g--- 396 (431)
+++. +... .....+++|+||+|+++|+|++++.||++++||+|+|.|||||+++|+||||++|+|++|+|+++
T Consensus 337 ~~~~~-~~~~--~~~~~~~~v~G~~C~s~D~l~~~~~LP~l~~GD~l~~~~~GAY~~s~~s~fN~~p~p~~v~v~~~~~~ 413 (419)
T 2plj_A 337 RYPLT-TIKQ--GGELIPSVLSGPTCDSVDVIAENILLPKLNNGDLVIGRTMGAYTSATATDFNFFKRAQTIALNEFVAS 413 (419)
T ss_dssp CCCEE-ESCC--SSCEEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEESSCSSSSGGGCBCGGGCCCCEEEEECCCC--
T ss_pred CCCEE-CCCC--CCCEEEEEEECCCCCCCCEECCCCCCCCCCCCCEEEECCCCHHHHHHHCCCCCCCCCCEEEEECCCCC
T ss_conf 46446-3478--88641599983797886888966288889999999988966334756276889998848999688887
Q ss_pred EEEEE
Q ss_conf 68999
Q gi|254780371|r 397 QFHII 401 (431)
Q Consensus 397 ~~~~i 401 (431)
+.|+|
T Consensus 414 ~~r~i 418 (419)
T 2plj_A 414 SERMI 418 (419)
T ss_dssp -----
T ss_pred CCCCC
T ss_conf 66652
No 14
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp}
Probab=100.00 E-value=0 Score=634.44 Aligned_cols=391 Identities=15% Similarity=0.183 Sum_probs=332.1
Q ss_pred CCCCEEECCEEEECCC---CHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCC
Q ss_conf 9871666885898784---2999999749978997799999999999986144797899964107999999999973992
Q gi|254780371|r 1 MSAFKYFEGSLHAENV---SLEKLAHVVQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSG 77 (431)
Q Consensus 1 m~~~~~~~~~l~i~~~---~l~~La~~~gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g 77 (431)
|+.++.+++.|+.++. ++..++++|+|||||||++.|++|+++|+++|+..+++++||+|||+++.||+++++.|+|
T Consensus 15 ~~~~~~~~~~l~~~~~~~~p~~~~~~~~~TP~yVyd~~~i~~n~~~l~~a~~~~~~~i~YAvKAN~~~~vl~~l~~~g~g 94 (418)
T 3n29_A 15 MTGGQQMGRDLYDDDDKDHPFTMFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFAFSGAMKIVGEYLKG 94 (418)
T ss_dssp -----------------------CCTTCCSSEEEEEHHHHHHHHHHHHHHHHHHCCEEEEETTTCCCGGGHHHHHHHSCE
T ss_pred CCCCHHHCCCCEECCCCCCCHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCE
T ss_conf 11515655430715444578899987459998997699999999999987603798899996437998999999970992
Q ss_pred EEEECHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCC
Q ss_conf 89868999865221257843124447754201244442068723333220246768774113344215899872377867
Q gi|254780371|r 78 LDIVSEGELRRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINAN 157 (431)
Q Consensus 78 ~dv~S~~El~~al~~G~~~~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~ 157 (431)
+||+|.+|+++|.. +++++|++++|+|++++|+.|++.|+ .|++||++||++|.+.+ +..+|+|||||+++.+
T Consensus 95 ~dv~S~~El~la~~--~~~~~ii~~~p~k~~~ei~~a~~~g~-~i~~DS~~El~~i~~~~----~~~~v~lRvnp~~~~~ 167 (418)
T 3n29_A 95 CTCSGLWEAKFAKE--YMDKEIHTYSPAFKEDEIGEIASLSH-HIVFNSLAQFHKFQSKT----QKNSLGLRCNVEFSLA 167 (418)
T ss_dssp EEESSHHHHHHHHH--HTCSEEEEEESSCCHHHHHHHHHHCS-EEEESSHHHHHHHGGGC----TTSEEEEEBCCCCC--
T ss_pred EEECCHHHHHHHCC--CCCCCEEEECCCCCHHHHHHHHHCCC-EEEECCHHHHHHHHHHC----CCCCEEEEEECCCCCC
T ss_conf 99529999998545--69980799499898999999998399-89976989999999757----7995899993587778
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 44333223344456887111134577764156322002335564156442048999999998876531026665268806
Q gi|254780371|r 158 THKKISTGKKEDKFGIPIHQIHSLYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVG 237 (431)
Q Consensus 158 ~~~~~~tg~~~sKFGi~~~~~~~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiG 237 (431)
.+..+.+++..||||++.+++.++ ....+.|+|||+||+..+ +.+.+.++.+.+. +...+..+++||+|
T Consensus 168 ~~~~~~~~g~~skfGi~~~~~~~~-------~~~~i~glh~H~gs~~~~-~~l~~~~~~~~~~---~~~~~~~l~~ldiG 236 (418)
T 3n29_A 168 PKELYNPCGRYSRLGIRAKDFENV-------DLNAIEGLHFHALCEESA-DALEAVLKVFEEK---FGKWIGQMKWVNFG 236 (418)
T ss_dssp --------CTTCCSSBCGGGGTTC-------CCTTCCEEECCCCSSBCH-HHHHHHHHHHHHH---HGGGTTTCSEEECC
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHH-------HHHCCCCCEECCCCCCCH-HHHHHHHHHHHHH---HHHHCCCCCEEEEC
T ss_conf 774101467776345757888777-------763364032167867735-8999999999999---99647774477615
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCEECCCCCEEEEEEEEECCCCCCCCEEECCCCCCCCCCHHH
Q ss_conf 87300026654553114565556542102453034410111203663258887640346897422005530001100111
Q gi|254780371|r 238 GGLGIAYHSDHRPPSSSDYASLIHQYFGNLQCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMNDFMRPTLY 317 (431)
Q Consensus 238 GGf~i~y~~~~~~~~~~~~~~~i~~~~~~~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~vD~g~~~~~~p~~~ 317 (431)
||||++|. ..+++++++.|++.+.+.++++++||||||||+||+++|+|+++|++.++.|++++++++++.++.++
T Consensus 237 GGf~v~y~----~~~~~~~~~~i~~~~~~~~~~liiEPGR~lva~ag~lvt~V~~vK~~~~~~~~~~~g~~~~~~~~~~~ 312 (418)
T 3n29_A 237 GGHHITKK----GYDVEKLIALCKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIM 312 (418)
T ss_dssp SCBCTTST----TCCHHHHHHHHHHHHHHHTCEEEECCSHHHHTTSEEEEEEEEEEEESSSEEEEESSCHHHHSHHHHHT
T ss_pred CCCCCCCC----CCCHHHHHHHHHHHHHHCCCCEEECCEEEECCCCEEEEEEEEEEEECCCCEEEEECCCCCCCCHHHHH
T ss_conf 73466756----56999999999999875388648745300103736999999999545864899978643578437763
Q ss_pred CCCCCCCCCC---------CCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHCCCCCCCCC
Q ss_conf 0246532222---------3467776158999810005666656210056688888999967970233340277889866
Q gi|254780371|r 318 DAYHEINYIV---------NPAGDRLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQSGTYNSRLLI 388 (431)
Q Consensus 318 ~~~~~i~~~~---------~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~s~~s~fn~~p~p 388 (431)
+.++.+.... .........+++|+||||+++|+|++++.+|++++||+|+|.|||||+++|+|+||++|+|
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~Gp~C~s~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~ss~FN~~p~P 392 (418)
T 3n29_A 313 PYTSEVLNARILATRENEKISDLKENEFAYLLTGNTCLAGDVMGEYAFDKKLKIGDKIVFLDQIHYTIVKNTTFNGIRLP 392 (418)
T ss_dssp TCCCCBTTEEEEECTTCCBCCCCCTTCEEEEEECSSSCTTCEEEEEEESSCCCTTCEEEESSCSSSSGGGCCCGGGCCCC
T ss_pred HCCCCEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCHHHHHHCCCCCCCCCC
T ss_conf 04743132544454444335566788148999817989875982047678999999999928754445452336799988
Q ss_pred EEEEEE-CCEEEEEEECCCHHHHHHCC
Q ss_conf 599998-89689998248988997308
Q gi|254780371|r 389 PEIMVN-GSQFHIIRPRMTFQELIELD 414 (431)
Q Consensus 389 ~~v~v~-~g~~~~ir~ret~ed~~~~~ 414 (431)
++|+++ +|+.++||| |||||++.++
T Consensus 393 a~vl~~~~g~~~~IR~-~~~~d~~~r~ 418 (418)
T 3n29_A 393 NLMLLDHKNELQMIRE-FSYKDYSLRN 418 (418)
T ss_dssp EEEEECTTSCEEEEEC-CCTHHHHTTC
T ss_pred CEEEEECCCCEEEEEC-CCHHHHHHCC
T ss_conf 0999978995999962-8877775169
No 15
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti}
Probab=100.00 E-value=0 Score=599.78 Aligned_cols=360 Identities=15% Similarity=0.204 Sum_probs=314.5
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCEEECCC
Q ss_conf 49978997799999999999986144797899964107999999999973992898689998652212578431244477
Q gi|254780371|r 25 VQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGV 104 (431)
Q Consensus 25 ~gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~S~~El~~al~~G~~~~~Ii~~g~ 104 (431)
..|||||||++.|++|+++|+++|+..+++++||+|||+++.|++++++.|+|+||+|.+|+++|+++|+++.+|++++
T Consensus 2 l~TP~yv~d~~~i~~~~~~~~~~~~~~~~~i~YAvKaN~~~~vl~~l~~~g~g~dvaS~~El~~a~~~g~~~~~i~~~~- 80 (365)
T 3mt1_A 2 IETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVRLGRERFGKETHAYSVA- 80 (365)
T ss_dssp CCSSEEEEEHHHHHHHHHHHHHHHHHHCCEEEEETTTCCCGGGHHHHTTTSCEEEESSHHHHHHHHHHTCSEEEEEESC-
T ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHCCCCCCEEECC-
T ss_conf 9998799779999999999998651269789999831688999999998098499668999999996589966177235-
Q ss_pred CCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 54201244442068723333220246768774113344215899872377867443332233444568871111345777
Q gi|254780371|r 105 GKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAY 184 (431)
Q Consensus 105 ~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~ 184 (431)
+++++++.++++|+ .|++||++||+++.+.++ ..+|+|||||+++.++++.++++...||||++..+.. +
T Consensus 81 -~~~~~~~~~~~~g~-~i~vDs~~El~~i~~~~~----~~~v~lRinp~~~~~~~~~~~~~~~~s~~g~~~~~~~---~- 150 (365)
T 3mt1_A 81 -YGDNEIDEVVSHAD-KIIFNSISQLERFADKAA----GIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKV---E- 150 (365)
T ss_dssp -CCTTTHHHHHHHCS-EEEESSHHHHHHHGGGGT----TSEEEEEECCC----------------CCSBCCHHHH---H-
T ss_pred -CCCCHHHHHHHCCC-EEEEECHHHHHHHHHHHC----CCCEEEEECCCCCCCCCEEECCCCCCCCCHHHHHHHH---H-
T ss_conf -67409999997399-899938889999998720----6656899724667544234216787554317699999---9-
Q ss_pred HHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 64156322002335564156442048999999998876531026665268806873000266545531145655565421
Q gi|254780371|r 185 ASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQYF 264 (431)
Q Consensus 185 ~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~~~ 264 (431)
.. ..++.|+|||+|||+.+++.|.++++.+.+.+ .+.+.++++||+|||||++|.+ .+++.+++.+++.+
T Consensus 151 --~~-~~~l~g~h~H~gs~~~~~~~~~~~i~~~~~~~---~~~~~~~~~idiGGGf~~~~~~----~~~~~~~~~i~~~~ 220 (365)
T 3mt1_A 151 --RV-MDRINGFMIHNNCENKDFGLFDRMLGEIEERF---GALIARVDWVSLGGGIHFTGDD----YPVDAFSARLRAFS 220 (365)
T ss_dssp --TT-GGGCSEEEECCC--CCSHHHHHHHHHHHHHHH---HHHHTTSSEEECCSCCCTTSTT----CCHHHHHHHHHHHH
T ss_pred --HH-HHHCCEEEEECCCCCCCHHHHHHHHHHHHHHH---HHHCCCCCEEECCCCCCCCCCH----HHHHHHHHHHHHHH
T ss_conf --98-73176479875878875789999999999998---9868984789807876776510----23589999999997
Q ss_pred CCCCCEEEEEECCEECCCCCEEEEEEEEECCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 02453034410111203663258887640346897422005530001-10011102465322223467776158999810
Q gi|254780371|r 265 GNLQCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMNDF-MRPTLYDAYHEINYIVNPAGDRLHIHADIVGP 343 (431)
Q Consensus 265 ~~~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~vD~g~~~~-~~p~~~~~~~~i~~~~~~~~~~~~~~~~i~G~ 343 (431)
++.++++++|||||+|++||+++++|+++|++ +++|+++|+|++++ +++.+|.+.+.+.+ +....+++|+||
T Consensus 221 ~~~~~~l~~EPGR~lva~ag~lv~~V~~~k~~-~~~~~~vd~g~~~~~~~~~~~~~~~~~~~------~~~~~~~~v~G~ 293 (365)
T 3mt1_A 221 DRYGVQIYLEPGEASITKSTTLEVTVLDTLYN-GKNLAIVDSSIEAHMLDLLIYRETAKVLP------NEGSHSYMICGK 293 (365)
T ss_dssp HHHTCEEEECCSHHHHTTSEEEEEEEEEEEES-SSEEEEESCCHHHHCHHHHHTTCCCCCSS------CCSSEEEEEECS
T ss_pred HHCCCCEECCCCCEEHHCCEEEEEEEEEEEEC-CEEEEEECCCCCCCCCCCCCCCCCCCCCC------CCCCEEEECCCC
T ss_conf 43145311477523400656999999999989-85799825754456654334455212357------777415633379
Q ss_pred ECCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEE-CCEEEEEEECCCHHHHHHC
Q ss_conf 005666656210056688888999967970233340277889866599998-8968999824898899730
Q gi|254780371|r 344 ICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMVN-GSQFHIIRPRMTFQELIEL 413 (431)
Q Consensus 344 ~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~s~~s~fn~~p~p~~v~v~-~g~~~~ir~ret~ed~~~~ 413 (431)
+|+++|+|++++.+|++++||+|+|.|||||+++|+|+||++|+|++|+++ +|+.++|| ||||||++.+
T Consensus 294 ~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~~s~Fn~~~~P~~v~~~~dg~~~~ir-r~~~~d~~~~ 363 (365)
T 3mt1_A 294 SCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVR-EFTYADYEQS 363 (365)
T ss_dssp SCCSSCEEEEEEESSCCCTTCEEEESSCCTTSTTSCCCGGGCCCCEEEEECTTSCEEEEE-CCCHHHHHHH
T ss_pred CCCCCCEECCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCCEEEEECCCCEEEEE-CCCHHHHHHH
T ss_conf 888776881246578999999999918844446661557899998799996799299995-3978998865
No 16
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A*
Probab=100.00 E-value=0 Score=585.27 Aligned_cols=363 Identities=22% Similarity=0.335 Sum_probs=318.7
Q ss_pred HHHHHHH---CCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCC
Q ss_conf 9999997---4997899779999999999998614479789996410799999999997399289868999865221257
Q gi|254780371|r 18 LEKLAHV---VQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEGELRRALAAPV 94 (431)
Q Consensus 18 l~~La~~---~gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~S~~El~~al~~G~ 94 (431)
+.+|.+. ..|||||||++.|++++++|+++|| +++++||+|||+++.|++.++++|+|+||+|++|+++|+++||
T Consensus 5 ~~~~~~~~~~~~~~fyv~d~~~i~~~~~~~~~~~p--~v~~~YAvKaN~~~~vl~~l~~~G~G~dv~S~~El~~al~~G~ 82 (372)
T 2nva_A 5 VNNILKAHPHQTKSFYVSSPKIVEDLIDQWTILFP--RVTPHYAVKCNNDEVLLKTMCDKNVNFDCASSSEIKKVIQIGV 82 (372)
T ss_dssp HHHHHHHCTTCCSEEEEECHHHHHHHHHHHHHHCT--TEEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHHTC
T ss_pred HHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHCC--CCEEEEEECCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHCCC
T ss_conf 99999748788986899729999999999998788--9869888511898999999998498499969999999998597
Q ss_pred CCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 84312444775420124444206872333322024676877411334421589987237786744333223344456887
Q gi|254780371|r 95 PAERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIP 174 (431)
Q Consensus 95 ~~~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~ 174 (431)
++++|+|+||+|++++|+.|+++|+.++++||+++++++.+.+ ...++.+|+++..... +++..+|||++
T Consensus 83 ~~~~Ii~~g~~K~~~el~~ai~~gv~i~~~ds~~~~~~i~~~~----~~~~~~~~~~~~~~~~------~~~~~~~fg~~ 152 (372)
T 2nva_A 83 SPSRIIFAHTMKTIDDLIFAKDQGVDIATFDSSFELDKIHTYH----PNCKMILRIRCDDPNA------TVQLGNKFGAN 152 (372)
T ss_dssp CGGGEEECCSCCCHHHHHHHHHHTCCEEEECSHHHHHHHHHHC----TTCEEEEEBCCCCTTC------SBCCTTTSSBC
T ss_pred CHHHEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC----CCCCCCEEEECCCCCC------CCCCCCCCCCC
T ss_conf 9124999489899999999998599700265399999998755----1333210110156755------44568877777
Q ss_pred CCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHH
Q ss_conf 11113457776415632200233556415644204899999999887653102666526880687300026654553114
Q gi|254780371|r 175 IHQIHSLYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSS 254 (431)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~ 254 (431)
..++.++++.++. .++++.|||||+|||+.+++.|.++++.+.++++++++.+..+++||+|||||++|..++.+..+.
T Consensus 153 ~~~~~~~~~~a~~-~~l~~~GlH~H~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IdiGGGf~~~y~~~~~~~~~~ 231 (372)
T 2nva_A 153 EDEIRHLLEYAKQ-LDIEVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGHKPYILDIGGGLHADIDEGELSTYMS 231 (372)
T ss_dssp GGGHHHHHHHHHH-TTCCEEEEECCCCBSBCCHHHHHHHHHHHHHHHHHHHHHTCCCCEEECCSCBCCCCC---CCCHHH
T ss_pred HHHHHHHHHHHHH-CCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCHH
T ss_conf 1777999999985-698188999866876587689999999877777666750797428997788673888877774599
Q ss_pred HHHHHHHHH-HCCCCCEEEEEECCEECCCCCEEEEEEEEECCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCCCCC-CCC
Q ss_conf 565556542-102453034410111203663258887640346897422005530001100111024653222234-677
Q gi|254780371|r 255 DYASLIHQY-FGNLQCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMNDFMRPTLYDAYHEINYIVNP-AGD 332 (431)
Q Consensus 255 ~~~~~i~~~-~~~~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~vD~g~~~~~~p~~~~~~~~i~~~~~~-~~~ 332 (431)
++...+... ....+++|++|||||||++||+++|+|+++|++.+..|+.+|+|+++.+.+.++...++...+... ..+
T Consensus 232 ~~~~~~~~~~~~~~~~~l~~EPGR~lva~ag~llt~V~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (372)
T 2nva_A 232 DYINDAIKDFFPEDTVTIVAEPGRFFAEHYSVLATQVIGKRVRDGLYEYFFNESTYGGFSNVIFEKSVPTPQLLRDVPDD 311 (372)
T ss_dssp HHHHHHHHHHCCCTTCEEEECCSHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTTCTHHHHSCCCCCCEESSCCCTT
T ss_pred HHHHHHHHHCCCCCCCEEECCCCEEEECCEEEEEEEEEEEEEECCCEEEEEECCCCCCCCCHHHHCCCCCEEEECCCCCC
T ss_conf 99876543024655533313771035146469999999999837822688403235755311211045640110367887
Q ss_pred CCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEE
Q ss_conf 7615899981000566665621005668888899996797023334027788986659999
Q gi|254780371|r 333 RLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMV 393 (431)
Q Consensus 333 ~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~s~~s~fn~~p~p~~v~v 393 (431)
.+..+++|+||+|+++|+|++++.||++++||+|+|.|||||+++|+||||++|+|+++++
T Consensus 312 ~~~~~~~i~G~~C~~~D~l~~~~~lP~l~~GD~l~~~~~GAY~~s~~s~fN~~~~p~v~~~ 372 (372)
T 2nva_A 312 EEYVPSVLYGCTCDGVDVINHNVALPELHIGDWVYFPSWGAYTNVLTTSFNGFGEYDVYYI 372 (372)
T ss_dssp CCEEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEESSCCSSSGGGCCCGGGCCCEEEEEC
T ss_pred CCEEEEEEEECCCCCCCEECCCCCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCCCCEEEC
T ss_conf 8777899993798847588866317999999999885945234845387889899817969
No 17
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: PLP; 3.00A {Campylobacter jejuni subsp}
Probab=100.00 E-value=0 Score=541.73 Aligned_cols=421 Identities=21% Similarity=0.267 Sum_probs=351.5
Q ss_pred CCEEECCEEEEC---CCCHHHHHHH-----CCCCEEEEEHHHHHHHHHHHHHHCCC--------CCCEEEEEEECCCCHH
Q ss_conf 716668858987---8429999997-----49978997799999999999986144--------7978999641079999
Q gi|254780371|r 3 AFKYFEGSLHAE---NVSLEKLAHV-----VQTPFYCYSTTAIEKNYLTFSNAFDG--------MDTMVCYALKANSNQA 66 (431)
Q Consensus 3 ~~~~~~~~l~i~---~~~l~~La~~-----~gTP~yV~d~~~i~~n~~~l~~a~~~--------~~~~i~yAvKaN~~~~ 66 (431)
+|++++|++.+. .++|.+|+++ ||||+||+|++.|++|+++++++|+. .+++++||+|||+++.
T Consensus 13 yf~i~~G~l~v~~~~~~~L~~lv~~l~~~~~gtPl~v~~~dil~~ri~~l~~aF~~A~~~~~y~g~y~~~YAvKaN~~~~ 92 (619)
T 3nzp_A 13 NFIIKNGKVCINYEKKPAIIDIVKELRDDGYKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPG 92 (619)
T ss_dssp GEEECSSSEEESSSSCCBHHHHHHHHHHTTCCSCEEEECHHHHHHHHHHHHHHHHHHHHHTTCCSCEEEEEEGGGCCCHH
T ss_pred CEEEECCEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHH
T ss_conf 50773886998789988999999999846899988997089999999999999999999808788818998862489999
Q ss_pred HHHHHHHCC----CCEEEECHHHHHHHHHCCCCCCCEEECCCCCCCHH----HHHHHHCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 999999739----92898689998652212578431244477542012----4444206872333322024676877411
Q gi|254780371|r 67 VIKTLAHLG----SGLDIVSEGELRRALAAPVPAERIVFSGVGKTIDE----IDLALQSGIYCFNVESESELKTLNQRAV 138 (431)
Q Consensus 67 il~~l~~~G----~g~dv~S~~El~~al~~G~~~~~Ii~~g~~k~~~~----l~~ai~~gv~~i~vDs~~el~~l~~~a~ 138 (431)
|++.+.+.| +|+||+|.+|+.+|+++|+++++|+|||+.|+... +...+..++ +|++||++||+++.++++
T Consensus 93 Vl~~l~~~G~~~~~GlEv~S~~EL~~Al~~g~~~~~Ii~nG~kk~e~~~~a~l~~~l~~~v-~ivvDs~~EL~~I~~~a~ 171 (619)
T 3nzp_A 93 FVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMGHNI-TLTIEGLNELEAIIDIAK 171 (619)
T ss_dssp HHHHHHHHTGGGTCEEEECSHHHHHHHHHHSCTTSEEEECSCCCHHHHHHHHHHHHTTCEE-EEEESSHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCEEEEECHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCC-EEEECCHHHHHHHHHHHH
T ss_conf 9999998374258818997999999999679898979989978859999999986118884-888799999999999999
Q ss_pred C-CCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC-CHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 3-3442158998723778674433322334445688711113457776415632-2002335564156442048999999
Q gi|254780371|r 139 S-LGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYASTLPGV-KISGVDMHIGSQIDQIESFHKAFKL 216 (431)
Q Consensus 139 ~-~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~~~~~~l-~l~GlH~H~GS~~~~~~~~~~~~~~ 216 (431)
+ .+..++|++|+||+. .+++....||+..||||++.+++.++++.+++...+ ++.|+|||+|||+.+++.|.++++.
T Consensus 172 ~~~~~~~~IglRi~~~~-~~~~~~~~tgg~~SKFGl~~~ei~~~i~~l~~~~~l~~l~GlHfHiGSQi~d~~~~~~al~~ 250 (619)
T 3nzp_A 172 ERFKPKPNIGLRVRLHS-AGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNE 250 (619)
T ss_dssp TSCSCCCEEEEEBCCTT-C-------------CCSBCHHHHHHHHHHHHHTTCTTTEEEEECCCCSCBCCSHHHHHHHHH
T ss_pred HHCCCCCCCCEEECCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHH
T ss_conf 85499876521323675-56674224688756578637889999999986577670689998258775648999999999
Q ss_pred HHHHHHHHHCCCC-CCCEEEECCCCCCCCCCCCC----CCCHHHHHHHHHHHH-------CCCCCEEEEEECCEECCCCC
Q ss_conf 9988765310266-65268806873000266545----531145655565421-------02453034410111203663
Q gi|254780371|r 217 LRDLTQQLRSNGH-NIQHIDVGGGLGIAYHSDHR----PPSSSDYASLIHQYF-------GNLQCKIILEPGRFLVADVG 284 (431)
Q Consensus 217 ~~~~~~~l~~~g~-~~~~ldiGGGf~i~y~~~~~----~~~~~~~~~~i~~~~-------~~~~~~l~~EPGR~lva~ag 284 (431)
+.+++.++++.|. ++++||+|||||++|...+. +.++++|++.+...+ +...|+|++|||||+||+||
T Consensus 251 ~~~l~~el~~~g~~~l~~LDIGGGlgV~Y~~~~~~~s~~y~l~eya~~Iv~~~~~~~~~~~~~~p~Ii~EPGRalVA~ag 330 (619)
T 3nzp_A 251 AGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHA 330 (619)
T ss_dssp HHHHHHHHHHTTCTTCCEEEEESCBCCCCCCSSSCCSCSSCHHHHHHHHHHHHHHHHHHTTCCCCEEEECCCHHHHGGGE
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCE
T ss_conf 99999998874897761875048767578642223445432999999999999999998089997399925788863042
Q ss_pred EEEEEEEEECCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCC--------------------------------------
Q ss_conf 258887640346897422005530001100111024653222--------------------------------------
Q gi|254780371|r 285 ILVTKVISIKKSADKTFVILDVAMNDFMRPTLYDAYHEINYI-------------------------------------- 326 (431)
Q Consensus 285 ~ll~~V~~vK~~~~~~~~~vD~g~~~~~~p~~~~~~~~i~~~-------------------------------------- 326 (431)
++|++|+++|+..+++|+++|+|+|++++|++|+++|.+...
T Consensus 331 vLVt~Vi~vK~~~~~~~~~vd~g~~~~lrp~Ly~~~h~i~~~~~~E~~~da~~~~~~~~~~f~~g~l~l~~ra~~e~l~~ 410 (619)
T 3nzp_A 331 VLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAEILTH 410 (619)
T ss_dssp EEEEEEEEEECCCCCGGGSCCCSSCCHHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHH
T ss_pred EEEEEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 89999999972488752463277771677999998873486614789999999999999999648878999999999999
Q ss_pred ------------------------------------------------------CCCCCCCCEEEEEEEEEECCCCCEEE
Q ss_conf ------------------------------------------------------23467776158999810005666656
Q gi|254780371|r 327 ------------------------------------------------------VNPAGDRLHIHADIVGPICETGDFIA 352 (431)
Q Consensus 327 ------------------------------------------------------~~~~~~~~~~~~~i~G~~C~~~D~l~ 352 (431)
.++-.++++....+++-||+|.+.+-
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~~NfS~fqslpD~Wai~Q~fpi~Pi~rl~e~p~~~~~l~diTCDSDg~i~ 490 (619)
T 3nzp_A 411 LITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEIS 490 (619)
T ss_dssp HHHHHHHHHCC-------------CCSBEEEESSCTTTTCHHHHHSSCCCCEEESSCTTSCCCCBBCCEESCSCTTSBCC
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEECHHHHCCCCCHHHHCCCCEEEEHHHCCCCCCEEEEEECCCCCCCCCCC
T ss_conf 99999987503567937777777777766241203430574056544644262452368886347998157738999644
Q ss_pred EE--EECC--CCCC-CC--EEEEECCCCHHHHHHCCCCCCCCCEEEEEE---CC-EEEEEEECCCHHHHHH-CCCCCHHH
Q ss_conf 21--0056--6888-88--999967970233340277889866599998---89-6899982489889973-08885688
Q gi|254780371|r 353 LN--RKIA--LPRP-GD--LLYIEKTGAYGAVQSGTYNSRLLIPEIMVN---GS-QFHIIRPRMTFQELIE-LDSIPAWL 420 (431)
Q Consensus 353 ~~--~~lp--~l~~-GD--~l~i~~~GAY~~s~~s~fn~~p~p~~v~v~---~g-~~~~ir~ret~ed~~~-~~~~p~~~ 420 (431)
.. ..|| .+.. |+ +|.|..+|||..+++..+|.++.|.+|.|+ +| +.+-+.+.+|.+|+++ .+.-|..+
T Consensus 491 ~~~~~~l~lh~~~~~~e~y~lg~Fl~GAYQe~lg~~HnLfg~~~~v~v~~~~~g~~~~~~~~g~~~~~vl~~~~y~~~~~ 570 (619)
T 3nzp_A 491 YSKDKPLFLHDVDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDTLEDLDYDIHAI 570 (619)
T ss_dssp CCSSSCCBCCCCCTTTSCCEEEECSCSSSTTTTCCCTTSCCCCEEEEEEECSSCEEEEEEECCCCHHHHHHHTTCCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEEEECCCCHHHHHHHCCCCHHHH
T ss_conf 45667755788788998608999844486798743536689998899997799748988526888999998738899999
Q ss_pred HHCCC
Q ss_conf 62343
Q gi|254780371|r 421 QKTPK 425 (431)
Q Consensus 421 ~~~~~ 425 (431)
.+.=+
T Consensus 571 ~~~~~ 575 (619)
T 3nzp_A 571 MDILN 575 (619)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
No 18
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.10A {Escherichia coli}
Probab=100.00 E-value=0 Score=513.28 Aligned_cols=419 Identities=21% Similarity=0.266 Sum_probs=349.7
Q ss_pred CCEEEC-CEEEE--------CCCCHHHHHHH-----CCCCEEEEEHHHHHHHHHHHHHHCCC--------CCCEEEEEEE
Q ss_conf 716668-85898--------78429999997-----49978997799999999999986144--------7978999641
Q gi|254780371|r 3 AFKYFE-GSLHA--------ENVSLEKLAHV-----VQTPFYCYSTTAIEKNYLTFSNAFDG--------MDTMVCYALK 60 (431)
Q Consensus 3 ~~~~~~-~~l~i--------~~~~l~~La~~-----~gTP~yV~d~~~i~~n~~~l~~a~~~--------~~~~i~yAvK 60 (431)
+|...+ |++.+ .++||.+|+++ ++||++|++++.|++++++++++|+. -+++++||+|
T Consensus 48 yf~in~~G~~~v~p~~~~~~~~idl~~lv~~~~~~g~~~P~~irf~diL~~rir~l~~aF~~Ai~~~~Y~g~y~~~YAvK 127 (666)
T 3nzq_A 48 YYDVNELGHISVCPDPDVPEARVDLAQLVKTREAQGQRLPALFCFPQILQHRLRSINAAFKRARESYGYNGDYFLVYPIK 127 (666)
T ss_dssp TEEECTTSSEEECSCTTSTTCCEEHHHHHHHHHHTTCCSSEEEECHHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEGG
T ss_pred CCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 53377995489946998888973899999999966999998996479999999999999999999809998779999964
Q ss_pred CCCCHHHHHHHHHCCC--CEEEECHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHC-----CCCCCCCCCCHHHHHH
Q ss_conf 0799999999997399--28986899986522125784312444775420124444206-----8723333220246768
Q gi|254780371|r 61 ANSNQAVIKTLAHLGS--GLDIVSEGELRRALAAPVPAERIVFSGVGKTIDEIDLALQS-----GIYCFNVESESELKTL 133 (431)
Q Consensus 61 aN~~~~il~~l~~~G~--g~dv~S~~El~~al~~G~~~~~Ii~~g~~k~~~~l~~ai~~-----gv~~i~vDs~~el~~l 133 (431)
||+++.|++.+.+.|+ |+||+|.+|+.+|+++|+++++|+|+|++|++++++.|+.. ++ .+++||++||+++
T Consensus 128 AN~~~~VL~~l~~~G~~~GlDvaS~gEL~~AL~~g~~p~~II~~n~~K~~e~I~~Al~~~~~~~~v-~iviDsl~EL~~I 206 (666)
T 3nzq_A 128 VNQHRRVIESLIHSGEPLGLEAGSKAELMAVLAHAGMTRSVIVCNGYKDREYIRLALIGEKMGHKV-YLVIEKMSEIAIV 206 (666)
T ss_dssp GCCCHHHHHHHHTSSSCEEEEESSHHHHHHHHHHHTTSCCEEEECSCCCHHHHHHHHHHHHTTCEE-EEEECSHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCCCEEEECHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHCCCCCEE-EEECCCHHHHHHH
T ss_conf 589899999999859980189818999999997289987199889977989999999828877101-3441889999999
Q ss_pred HHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC-CHHHHHHHHHHCCCCCHHHHH
Q ss_conf 7741133442158998723778674433322334445688711113457776415632-200233556415644204899
Q gi|254780371|r 134 NQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYASTLPGV-KISGVDMHIGSQIDQIESFHK 212 (431)
Q Consensus 134 ~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~~~~~~l-~l~GlH~H~GS~~~~~~~~~~ 212 (431)
.+.+++.+..++|++|+||... +++....||+..||||++.+++.++++.+++...+ .+.|||||+|||+.+.+.|.+
T Consensus 207 ~~~a~~l~v~~rIglRi~l~~~-~~~~~~~Tgg~~SKFGi~~~ei~~~i~~lk~~~~l~~L~GLHfHIGSQi~d~~~~~~ 285 (666)
T 3nzq_A 207 LDEAERLNVVPRLGVRARLASQ-GSGKWQSSGGEKSKFGLAATQVLQLVETLREAGRLDSLQLLHFHLGSQMANIRDIAT 285 (666)
T ss_dssp HHHHHHTTCCCCEEEEBCCSSS-CSSTTCSSSSSCCCSCBCHHHHHHHHHHHHHTTCTTTEEEEECCCCSSCCCHHHHHH
T ss_pred HHHHHHCCCCCEEEEECCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHH
T ss_conf 9999972988616776146656-777765558876778778899999999998658777546899866876442699999
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCC------CCHHHHHHHHHHHHCC-------CCCEEEEEECCEE
Q ss_conf 99999988765310266652688068730002665455------3114565556542102-------4530344101112
Q gi|254780371|r 213 AFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRP------PSSSDYASLIHQYFGN-------LQCKIILEPGRFL 279 (431)
Q Consensus 213 ~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~------~~~~~~~~~i~~~~~~-------~~~~l~~EPGR~l 279 (431)
+++.+.+++.++++.|+++++||+|||||++|..++.+ +++++|+..|...+++ ..|+|++|||||+
T Consensus 286 al~~~~~l~~el~~~G~~l~~IDIGGGfgV~Y~~~~~~~~~s~ny~leeya~~Iv~~l~~~~~~~~v~~p~Li~EPGRaL 365 (666)
T 3nzq_A 286 GVRESARFYVELHKLGVNIQCFDVGGGLGVDYEGTRSQSDCSVNYGLNEYANNIIWAIGDACEENGLPHPTVITESGRAV 365 (666)
T ss_dssp HHHHHHHHHHHHHTTTCCCCEEECCSCCCCCSSSSCSSSTTCCSSCHHHHHHHHHHHHHHHHHHHTCCCCEEEECCHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHH
T ss_conf 99999999999865397752886177456466764443321034339999999999999999963999986998787777
Q ss_pred CCCCCEEEEEEEEECCCCCCCCEEECCCCCCCCCC---------------------------------------------
Q ss_conf 03663258887640346897422005530001100---------------------------------------------
Q gi|254780371|r 280 VADVGILVTKVISIKKSADKTFVILDVAMNDFMRP--------------------------------------------- 314 (431)
Q Consensus 280 va~ag~ll~~V~~vK~~~~~~~~~vD~g~~~~~~p--------------------------------------------- 314 (431)
||+||++|++|+++|++........+..++.++++
T Consensus 366 VA~agvLVt~Vi~vK~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~E~~~da~~~~~~~~~~f~~G~~~l~~r 445 (666)
T 3nzq_A 366 TAHHTVLVSNIIGVERNEYTVPTAPAEDAPRALQSMWETWQEMHEPGTRRSLREWLHDSQMDLHDIHIGYSSGIFSLQER 445 (666)
T ss_dssp HTTSEEEEEEEEEEECCCCCCCCCCCTTSCHHHHHHHHHHHHHSSSSCSTTHHHHHHHHHHHHHHHHHHHHTTSSCHHHH
T ss_pred HHCCEEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 52125899999997237888888885436477899999999976540430489999999999999999874486648999
Q ss_pred -----------------------------------------------------HHHCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf -----------------------------------------------------111024653222234677761589998
Q gi|254780371|r 315 -----------------------------------------------------TLYDAYHEINYIVNPAGDRLHIHADIV 341 (431)
Q Consensus 315 -----------------------------------------------------~~~~~~~~i~~~~~~~~~~~~~~~~i~ 341 (431)
+..++.+|+.++. +-.++++....++
T Consensus 446 a~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~y~~NfS~fqslPD~WaI~Q~Fpi~Pi~-rl~e~p~~~~~l~ 524 (666)
T 3nzq_A 446 AWAEQLYLSMCHEVQKQLDPQNRAHRPIIDELQERMADKMYVNFSLFQSMPDAWGIDQLFPVLPLE-GLDQVPERRAVLL 524 (666)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTSGGGHHHHHHHHHTTCEEEEESSCHHHHCTHHHHSCCCCCEEESS-CTTSCCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEEEHHHHCCCCHHHHHCCCCEEEEHH-HCCCCCCEEEEEE
T ss_conf 999999999999999874211245858899999876566155025630474066544545162243-4489862578994
Q ss_pred EEECCCCCEEE---------EEEECCCCCCCC--EEEEECCCCHHHHHHCCCCCCCCCEEEEEE---CC--EEEEEEECC
Q ss_conf 10005666656---------210056688888--999967970233340277889866599998---89--689998248
Q gi|254780371|r 342 GPICETGDFIA---------LNRKIALPRPGD--LLYIEKTGAYGAVQSGTYNSRLLIPEIMVN---GS--QFHIIRPRM 405 (431)
Q Consensus 342 G~~C~~~D~l~---------~~~~lp~l~~GD--~l~i~~~GAY~~s~~s~fn~~p~p~~v~v~---~g--~~~~ir~re 405 (431)
+=||+|.+.+- ...+||.++.|+ +|.|..+|||..+|+..+|.++.|.+|-|. +| ....+++.+
T Consensus 525 diTCDSDG~i~~f~~~~~~~~~l~lh~~~~~e~yylg~Fl~GAYQe~lG~~HNLfg~~~~v~v~~~~~g~~~~~~~~~g~ 604 (666)
T 3nzq_A 525 DITCDSDGAIDHYIDGDGIATTMPMPEYDPENPPMLGFFMVGAYQEILGNMHNLFGDTEAVDVFVFPDGSVEVELSDEGD 604 (666)
T ss_dssp ESCSSTTCBCCCEEETTEEESSEEECSCCTTSCCEEEECSCCSSCGGGCCCTTSCCCCEEEEEEECTTSCEEEEEEECCC
T ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHCCCCCCCCCCEEEEEECCCCCEEEEEEECCC
T ss_conf 45648999720111776665775688789899767999863473687710535789997799998699988999963689
Q ss_pred CHHHHHH-CCCCCHHHHHCC
Q ss_conf 9889973-088856886234
Q gi|254780371|r 406 TFQELIE-LDSIPAWLQKTP 424 (431)
Q Consensus 406 t~ed~~~-~~~~p~~~~~~~ 424 (431)
|.+|+++ .+.-|..|.+.=
T Consensus 605 t~~~vL~~v~y~~~~l~~~~ 624 (666)
T 3nzq_A 605 TVADMLQYVQLDPKTLLTQF 624 (666)
T ss_dssp BHHHHHHHTTCCHHHHHHHH
T ss_pred CHHHHHHHCCCCHHHHHHHH
T ss_conf 89999987498999999999
No 19
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=0 Score=506.23 Aligned_cols=422 Identities=20% Similarity=0.267 Sum_probs=346.9
Q ss_pred CCEEEC-CEEEE-------CCCCHHHHHHH-----CCCCEEEEEHHHHHHHHHHHHHHCCC--------CCCEEEEEEEC
Q ss_conf 716668-85898-------78429999997-----49978997799999999999986144--------79789996410
Q gi|254780371|r 3 AFKYFE-GSLHA-------ENVSLEKLAHV-----VQTPFYCYSTTAIEKNYLTFSNAFDG--------MDTMVCYALKA 61 (431)
Q Consensus 3 ~~~~~~-~~l~i-------~~~~l~~La~~-----~gTP~yV~d~~~i~~n~~~l~~a~~~--------~~~~i~yAvKa 61 (431)
+|...+ |++.+ ..+||.+|+++ ++||++|++++.|++++++++++|+. -..+++||+||
T Consensus 27 yf~i~~~G~~~v~p~~~~~~~idl~~lv~~~~~~g~~~P~lirf~diL~~ri~~l~~aF~~Ai~~~~Y~g~y~~~YavKa 106 (648)
T 3n2o_A 27 FYGIDDQGEMYVSPRSDNAHQIQLSKIVKQLEERQLNVPVLVRFPQILHQRVHSICDAFNQAIEEYQYPNKYLLVYPIKV 106 (648)
T ss_dssp SEEECTTSCEEECCSTTCCCCEEHHHHHHHHHHTTCCSSEEEECHHHHHHHHHHHHHHHHHHHHHHTCSSCEEECEEGGG
T ss_pred CCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
T ss_conf 61067994389962798898727999999999659999889964499999999999999999997399986379988735
Q ss_pred CCCHHHHHHHHHCC-------CCEEEECHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHC-----CCCCCCCCCCHH
Q ss_conf 79999999999739-------928986899986522125784312444775420124444206-----872333322024
Q gi|254780371|r 62 NSNQAVIKTLAHLG-------SGLDIVSEGELRRALAAPVPAERIVFSGVGKTIDEIDLALQS-----GIYCFNVESESE 129 (431)
Q Consensus 62 N~~~~il~~l~~~G-------~g~dv~S~~El~~al~~G~~~~~Ii~~g~~k~~~~l~~ai~~-----gv~~i~vDs~~e 129 (431)
|+++.|++.+.+.| +|+||+|.+||.+|+++|+++++|+|+||+|++++|+.|+.. ++ ++++||++|
T Consensus 107 N~~~~Vle~l~~~G~~~e~~~~GlDv~S~~EL~~aL~~g~~~~~II~~n~~K~~e~I~~Al~~~~~~~~v-iiviDs~~E 185 (648)
T 3n2o_A 107 NQQREVVDEILASQAQLETKQLGLEAGSKPELLAVLAMAQHASSVIVCNGYKDREYIRLALIGEKLGHKV-FIVLEKMSE 185 (648)
T ss_dssp CCCHHHHHHHHHHHHHSTTCCCEEEECSHHHHHHHHHHTSSSCCEEEECSCCCHHHHHHHHHHHHTTCEE-EEEECSTHH
T ss_pred CCCHHHHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCC-EEEECCHHH
T ss_conf 7999999999975997434566428748999999996599976178789969999999999808876572-787489999
Q ss_pred HHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC-CHHHHHHHHHHCCCCCH
Q ss_conf 67687741133442158998723778674433322334445688711113457776415632-20023355641564420
Q gi|254780371|r 130 LKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYASTLPGV-KISGVDMHIGSQIDQIE 208 (431)
Q Consensus 130 l~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~~~~~~l-~l~GlH~H~GS~~~~~~ 208 (431)
|++|.+++++.+.+++|++|+||+....++ ...||+..||||++.+++.++++.+++...+ .+.|||||+|||+.+.+
T Consensus 186 L~~I~~ia~~~~~~~~IglRIn~~~~~~~~-~~~tgg~~SKFGl~~~ei~~~l~~l~~~~~l~~l~gLHfHiGSQI~d~~ 264 (648)
T 3n2o_A 186 LDLVLREAKSLGVTPRLGIRIRLASQGAGK-WQASGGEKSKFGLSASQVLNVISRLKKENQLDTLQLVHFHLGSQMANIR 264 (648)
T ss_dssp HHHHHHHHHHHTCCCEEEEEBCCSTTSTTT-TCSSSSCCCCCCBCHHHHHHHHHHHHHTTCGGGEEEEECCCCSSBCCHH
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHH
T ss_conf 999999999709985599998568667887-5233787677799989999999997655665504579997587523289
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCC------CCHHHHHHHHHHHHC-------CCCCEEEEEE
Q ss_conf 489999999988765310266652688068730002665455------311456555654210-------2453034410
Q gi|254780371|r 209 SFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRP------PSSSDYASLIHQYFG-------NLQCKIILEP 275 (431)
Q Consensus 209 ~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~------~~~~~~~~~i~~~~~-------~~~~~l~~EP 275 (431)
.|.++++.+.+++.++++.|+++++||+|||||++|..++.+ +++++|+..|...++ ...|+|++||
T Consensus 265 ~~~~al~e~~~l~~eL~k~G~~l~~IDIGGGlgV~Y~~~~~~~~~s~~y~~eeya~~Iv~~i~~~~~~~~~~~p~Ii~Ep 344 (648)
T 3n2o_A 265 DVRNGVNESARFYCELRTLGANITYFDVGGGLAIDYDGTRSQSSNSMNYGLVEYARNIVNTVGDVCKDYKQPMPVIISES 344 (648)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCEEECCSCBCCCTTSCCCSSTTSCSCCHHHHHHHHHHHHHHHHHHHTCCCCEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf 99999999999999999619998689868854656765456676310356999999999999999997299998799937
Q ss_pred CCEECCCCCEEEEEEEEECCCCCCCCEE----------------------------------------------------
Q ss_conf 1112036632588876403468974220----------------------------------------------------
Q gi|254780371|r 276 GRFLVADVGILVTKVISIKKSADKTFVI---------------------------------------------------- 303 (431)
Q Consensus 276 GR~lva~ag~ll~~V~~vK~~~~~~~~~---------------------------------------------------- 303 (431)
|||+||+||++|++|+++|+..+.....
T Consensus 345 GRalVA~agvLVt~VidvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~da~~~~~~~~~~f~~g~l~ 424 (648)
T 3n2o_A 345 GRSLTAHHAVLISNVIGTETYKPETVTEPEEDFPLLLNNMWRSWLNLHNGTDARALIEIYNDTQSDLAEVHSQFATGVLT 424 (648)
T ss_dssp HHHHHGGGEEEEEEEEEEECCCCCCCCCCCTTCCHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 78995587537899888622686667866554205689999999998632557789999999999999999986148878
Q ss_pred ---------------------------------------------ECCCC-CCCCCCHHHCCCCCCCCCCCCCCCCCEEE
Q ss_conf ---------------------------------------------05530-00110011102465322223467776158
Q gi|254780371|r 304 ---------------------------------------------LDVAM-NDFMRPTLYDAYHEINYIVNPAGDRLHIH 337 (431)
Q Consensus 304 ---------------------------------------------vD~g~-~~~~~p~~~~~~~~i~~~~~~~~~~~~~~ 337 (431)
++-++ ..++.-+..++.+|+.++.. -.++++..
T Consensus 425 l~~ra~~e~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~y~~NfS~FqslPD~Wai~Q~Fpi~Pl~r-l~e~p~~~ 503 (648)
T 3n2o_A 425 LEHRAWAEQTSLRIYYELNRLMSTKNRFHRPILDELSERLADKFFVNFSLFQSLPDSWGIDQVFPVLPLSG-LQNAADRR 503 (648)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTSTTHHHHHHHHHHHTCEEEEESSCHHHHCHHHHHHCCCCCEEESSC-GGGTTSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHCCCCCCCCHHH-CCCCCEEE
T ss_conf 89999999999999999999865303468188999998876787014023200752776555462230423-68876048
Q ss_pred EEEEEEECCCCCEEE---------EEEECCCCCCCC--EEEEECCCCHHHHHHCCCCCCCCCEEEEEE---CC--EEEEE
Q ss_conf 999810005666656---------210056688888--999967970233340277889866599998---89--68999
Q gi|254780371|r 338 ADIVGPICETGDFIA---------LNRKIALPRPGD--LLYIEKTGAYGAVQSGTYNSRLLIPEIMVN---GS--QFHII 401 (431)
Q Consensus 338 ~~i~G~~C~~~D~l~---------~~~~lp~l~~GD--~l~i~~~GAY~~s~~s~fn~~p~p~~v~v~---~g--~~~~i 401 (431)
..+++-||+|.+.+- ...+|+.++.|. +|.|..+|||.-+++..+|.++.|.+|-|+ +| ....+
T Consensus 504 ~~l~diTCDSDG~i~~fi~~~~~~~~l~lh~~~~~e~yylG~Fl~GAYQe~lG~~HnLfg~~~~v~v~~~~~g~~~~~~~ 583 (648)
T 3n2o_A 504 AVMLDITCDSDGAIDAYVDGQGIESTLPVPAWNEDEPYLMGFFLVGAYQEILGDMHNLFGDTHSVVVNVGDQGEINIDFI 583 (648)
T ss_dssp EEEEESSSCTTCBCCCEEETTEEESSEEECCCCTTSCCEEEEESCCSSHHHHCCCGGGCCCCEEEEEEECTTSCEEEEEE
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHCCCCCCCCCCCEEEEEECCCCCEEEEEE
T ss_conf 99745771799970024587766457578888999977799985357268762253358999879999879998899985
Q ss_pred EECCCHHHHHH-CCCCCHHHHHCCCCC
Q ss_conf 82489889973-088856886234321
Q gi|254780371|r 402 RPRMTFQELIE-LDSIPAWLQKTPKQS 427 (431)
Q Consensus 402 r~ret~ed~~~-~~~~p~~~~~~~~~~ 427 (431)
.+.+|.+|+++ .+.-|..|++.-++.
T Consensus 584 ~~g~t~~~vL~~v~y~~~~l~~~~~~~ 610 (648)
T 3n2o_A 584 NEGDTVEDMMRYVHIDVDQIRKNYHSL 610 (648)
T ss_dssp ECCCBHHHHHHHTTCCHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 268989999987399999999999999
No 20
>3gwq_A D-serine deaminase; YP_556991.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.00A {Burkholderia xenovorans LB400}
Probab=99.91 E-value=2.9e-22 Score=169.86 Aligned_cols=340 Identities=14% Similarity=0.113 Sum_probs=208.7
Q ss_pred HHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCCE
Q ss_conf 99974997899779999999999998614479789996410799999999997399-28986899986522125784312
Q gi|254780371|r 21 LAHVVQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGS-GLDIVSEGELRRALAAPVPAERI 99 (431)
Q Consensus 21 La~~~gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~-g~dv~S~~El~~al~~G~~~~~I 99 (431)
+.+++.||++|+|++.|++|++.+++.+...+.++...+||++.+.|++.+.+.|+ |+.|++..|.+..+++|++ ++
T Consensus 40 ~~~~l~tP~lvid~~~l~~Ni~~m~~~~~~~gv~lrph~Kth~s~~va~~~l~~Ga~g~~vatl~Ea~~l~~~Gi~--~i 117 (426)
T 3gwq_A 40 LNEDVSLPAAVLYADRVEHNLKWMQAFVAEYGVKLAPHGKTTMAPQLFRRQLETGAWGITLATAHQVRAAYHGGVS--RV 117 (426)
T ss_dssp GGTCBCSSEEEEEHHHHHHHHHHHHHHHHHHCCEECCBCTTTCCHHHHHHHHHTTCCCEEESSHHHHHHHHHTTCC--EE
T ss_pred CCCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCC--CE
T ss_conf 1125899739984999999999999988756974999811146499999999779987998609999999976999--87
Q ss_pred EECCCCCCCHHHHHHHHC----CCC-CCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 444775420124444206----872-333322024676877411334421589987237786744333223344456887
Q gi|254780371|r 100 VFSGVGKTIDEIDLALQS----GIY-CFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIP 174 (431)
Q Consensus 100 i~~g~~k~~~~l~~ai~~----gv~-~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~ 174 (431)
++..|...++.++.+.+. +.. .+.+||.++++.+.+.+.+.+++.+|.|.++. |. +|.|+.
T Consensus 118 lla~~~~~~~~~~~~~~~~~~~~~~i~~~vds~~~l~~l~~~a~~~~~~~~V~i~vDt------------G~--~R~G~~ 183 (426)
T 3gwq_A 118 LMANQLVGRRNMMMVAELLSDPEFEFFCLVDSVEGVEQLGEFFKSVNKQLQVLLELGV------------PG--GRTGVR 183 (426)
T ss_dssp EECSCCCSHHHHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCCEEEEEEECC------------TT--SSSSBC
T ss_pred EEECCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCEEEEEEEECCC------------CC--CCCCCC
T ss_conf 9946778979999999986355740599987899999999988756806898765056------------77--656666
Q ss_pred -CCCCHHHHHHHHHC-CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC---CCCCCEEEECCCCCCCCCCCCC
Q ss_conf -11113457776415-632200233556415644204899999999887653102---6665268806873000266545
Q gi|254780371|r 175 -IHQIHSLYAYASTL-PGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSN---GHNIQHIDVGGGLGIAYHSDHR 249 (431)
Q Consensus 175 -~~~~~~~~~~~~~~-~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~---g~~~~~ldiGGGf~i~y~~~~~ 249 (431)
.+++.++++.+.+. +++++.|+++|.|+. .+........+...+.+..+.+. +.....+..||..+.
T Consensus 184 ~~e~~~~l~~~i~~~~~~l~l~Gi~~~~g~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ggs~~~------- 255 (426)
T 3gwq_A 184 DAAQRNAVLEAITRYPDTLKLAGVELYEGVL-KEEHEVREFLQSAVAVTRELVEQERFARAPAVLSGAGSAWY------- 255 (426)
T ss_dssp SHHHHHHHHHHHHTSTTTEEEEEEEECGGGC-CSHHHHHHHHHHHHHHHHHHHHHTCCSSSSEEEEECCSTTH-------
T ss_pred CHHHHHHHHHHHHHCCCCCEEEEEEECCCCC-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCH-------
T ss_conf 6589999999998577886566998515334-77343999999999999999998532788704644688540-------
Q ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEECCEECC---------------------------CCCEEEEEEEEECCCCCCCCE
Q ss_conf 53114565556542102453034410111203---------------------------663258887640346897422
Q gi|254780371|r 250 PPSSSDYASLIHQYFGNLQCKIILEPGRFLVA---------------------------DVGILVTKVISIKKSADKTFV 302 (431)
Q Consensus 250 ~~~~~~~~~~i~~~~~~~~~~l~~EPGR~lva---------------------------~ag~ll~~V~~vK~~~~~~~~ 302 (431)
...+..+............+.||.|+.. .+..++++|..++. ..++
T Consensus 256 ----~~~~~~~~~~~~~~~~~~~vrpG~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~s~~~---~~~~ 328 (426)
T 3gwq_A 256 ----DVVAEEFVKASETGKVEVVLRPGCYLTHDVGIYRKAQTDIFARNPVAKKMGEGLLPALQLWAYVQSIPE---PDRA 328 (426)
T ss_dssp ----HHHHHHTHHHHHSSSEEEEECCCCSSSSCSHHHHHHHHHHC----------CCCCCCEEEEEEEEEEEE---TTEE
T ss_pred ----HHHCCCCCCCCCCCCCEEEECCEEEEEECCCHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECC---CCEE
T ss_conf ----100331002556764026973447997046311102332001351002333123201688778976556---8759
Q ss_pred EECCCCCCCCCCHHHCCCCCCCCCCCCCC---CCCEEEEEEEEEECCCCC-EEEEEEECCCCCCCCEEEEECCCCHHHHH
Q ss_conf 00553000110011102465322223467---776158999810005666-65621005668888899996797023334
Q gi|254780371|r 303 ILDVAMNDFMRPTLYDAYHEINYIVNPAG---DRLHIHADIVGPICETGD-FIALNRKIALPRPGDLLYIEKTGAYGAVQ 378 (431)
Q Consensus 303 ~vD~g~~~~~~p~~~~~~~~i~~~~~~~~---~~~~~~~~i~G~~C~~~D-~l~~~~~lp~l~~GD~l~i~~~GAY~~s~ 378 (431)
++|.|.-....+.... +........... -.....+.+.| |. .+ .+-.--.-+.+++||.|.|.-- .=|
T Consensus 329 ~v~~G~~~~~~d~g~~-~~~~~~~~g~~~~~~~~~~~~~~i~g--~~-dqH~~i~~~~~~~l~vGD~V~~~p~-H~c--- 400 (426)
T 3gwq_A 329 IIGLGKRDSAFDAGMP-EPARHYRPGNEAPRDIAASEGWEIFG--LM-DQHAYLRIPAGADLKVGDMIAFDIS-HPC--- 400 (426)
T ss_dssp EESCCTTTSCGGGCCC-EEEEEECTTSSSCEECCGGGCCEEEE--EC-SSCEEEECCTTCSCCTTCEEEEECS-SGG---
T ss_pred EECCCCEEEEECCCCC-CCCCCCCCCCCCCCCCCCCCCEEEEE--EC-CCCEEEECCCCCCCCCCCEEEEECC-CCC---
T ss_conf 9816546875046777-56210235666763013799827989--84-7720898789998999999999828-788---
Q ss_pred HCCCCCCCCCEEEEEECC-E-EEEEE
Q ss_conf 027788986659999889-6-89998
Q gi|254780371|r 379 SGTYNSRLLIPEIMVNGS-Q-FHIIR 402 (431)
Q Consensus 379 ~s~fn~~p~p~~v~v~~g-~-~~~ir 402 (431)
..||.++ --++|+++ . .++||
T Consensus 401 -~t~~~~~--~~~~vd~~~~v~~~~~ 423 (426)
T 3gwq_A 401 -LTFDKWR--QVLVVDPAYRVTEVIE 423 (426)
T ss_dssp -GGGGGCS--EEEEECTTSBEEEEEE
T ss_pred -CCHHHCC--EEEEEECCCEEEEEEE
T ss_conf -1555198--8999979996999998
No 21
>3llx_A Predicted amino acid aldolase or racemase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: LLP TRS; 1.50A {Idiomarina loihiensis}
Probab=99.87 E-value=2e-20 Score=157.45 Aligned_cols=345 Identities=14% Similarity=0.102 Sum_probs=205.5
Q ss_pred HHCCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCCEEE
Q ss_conf 974997899779999999999998614479789996410799999999997399-2898689998652212578431244
Q gi|254780371|r 23 HVVQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGS-GLDIVSEGELRRALAAPVPAERIVF 101 (431)
Q Consensus 23 ~~~gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~-g~dv~S~~El~~al~~G~~~~~Ii~ 101 (431)
.+..||++|+|++.|++|++.+++.+...+.+++..+||+.++.|++.+.+.|+ |+.|++..|.+...++|++ ++++
T Consensus 10 ~~~dTP~lviDl~~l~~N~~~~~~~~~~~~~~l~~~vK~h~~~~ia~~l~~~G~~~~~va~~~Ea~~l~~~g~~--~~l~ 87 (376)
T 3llx_A 10 AHPDTPYLLIDEAKLKSNINYLKQRVESLGSHLRPHLKTLRTLEAAGYLLDSKSAPATVSTLAEAEAYAKAGYT--DLLY 87 (376)
T ss_dssp GSSCSSEEEEEHHHHHHHHHHHHHHHHHTTCCBCCBCTTTCBHHHHHHHCSSTTSCEEESSHHHHHHHHHTTCC--EEEE
T ss_pred HCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCC--CEEE
T ss_conf 32799669986999999999999865355983999964137999999999789998998059999999967998--6698
Q ss_pred CCC-CCC-CHHHHHHHHCCCC-CCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 477-542-0124444206872-3333220246768774113344215899872377867443332233444568871111
Q gi|254780371|r 102 SGV-GKT-IDEIDLALQSGIY-CFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQI 178 (431)
Q Consensus 102 ~g~-~k~-~~~l~~ai~~gv~-~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~ 178 (431)
..+ ... .+.+..+...+.. .+.+||.+.++.+.+.+++.++..+|.|.|+ +|. .|.|+.+++.
T Consensus 88 ~~~~~~~~~~~~~~l~~~~~~~~~~vds~~~~~~l~~~a~~~~~~~~v~l~iD------------~G~--~R~G~~~~~~ 153 (376)
T 3llx_A 88 AVGIAPAKLKRVAALRQQGINLHILLDNITQAQAVVDYAAEFGQDFSVFIEID------------SDD--HRGGIKPSDS 153 (376)
T ss_dssp EEECCGGGHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTCCCEEEEEBC------------SSS--SSSCBCTTCT
T ss_pred ECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEEEE------------CCC--CCCCCCHHHH
T ss_conf 14678056799999873487489997779999999999987498258998750------------588--7577890599
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHC--CCCCH----HHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf 3457776415632200233556415--64420----48999999998876531026665268806873000266545531
Q gi|254780371|r 179 HSLYAYASTLPGVKISGVDMHIGSQ--IDQIE----SFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPS 252 (431)
Q Consensus 179 ~~~~~~~~~~~~l~l~GlH~H~GS~--~~~~~----~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~ 252 (431)
.+..+...+++++.|++.|.|.. ..+.+ ...+..+....+.+.++..|.++.+++.||.....+..+....+
T Consensus 154 --~~~~~~~~~~l~~~Gi~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~s~g~t~~~~~~~~~~~i~ 231 (376)
T 3llx_A 154 --KLLTIAKTLGEHFTGLMTHAGGSYACNTEQGLKNFAKQECDAVRIARNNLETAGIHCAITSVGSTPTAHFGEDFSDIS 231 (376)
T ss_dssp --HHHHHHHHHGGGEEEEECCCGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEECCHHHHHHCSCCTTCS
T ss_pred --HHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHCCCCCCE
T ss_conf --999730121100033102333124569878999999999999999875576449985189817970465640378853
Q ss_pred HHHHHHHH-H--HHHCCCCCEEEEEECCEECCCCCEEEEEEEEECCCCCCCCEEECCCCCCCCCC-HHHCCCCCCCCCCC
Q ss_conf 14565556-5--42102453034410111203663258887640346897422005530001100-11102465322223
Q gi|254780371|r 253 SSDYASLI-H--QYFGNLQCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMNDFMRP-TLYDAYHEINYIVN 328 (431)
Q Consensus 253 ~~~~~~~i-~--~~~~~~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~vD~g~~~~~~p-~~~~~~~~i~~~~~ 328 (431)
.-..+..+ . ..... .. .+ ....+...+++|+.++. .++++++|+|.-.+... ..... .......
T Consensus 232 ~lr~G~~~~~d~~~~~~-~~----~~---~~~~a~~v~~~vv~~~~--~~~~~~~~~G~~a~~~d~g~~~~--~~~~~~g 299 (376)
T 3llx_A 232 EVRAGVYTTFDLVMKNI-GV----CD---FSHIAMSVVTTVIGHNK--EKNWLLTDSGWMALSRDSGTAGQ--NRDFGYG 299 (376)
T ss_dssp EECCCGGGTCCHHHHHH-TS----CC---GGGCCEEEEEEEEEEET--TTTEEEESCCHHHHCSCCGGGGS--SSCCBTC
T ss_pred EECCCCCCCCCHHHHCC-CC----CC---CCCCCEEEEEEEEEECC--CCCEEEECCCCEEEECCCCCCCC--CEECCCC
T ss_conf 75654402368666324-65----86---12111389999995237--88767743653010024677666--4001267
Q ss_pred -C-CCCCCEEEEEEEEEECCCCCEEEEE--EECCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECCEEEEEEEC
Q ss_conf -4-6777615899981000566665621--00566888889999679702333402778898665999988968999824
Q gi|254780371|r 329 -P-AGDRLHIHADIVGPICETGDFIALN--RKIALPRPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMVNGSQFHIIRPR 404 (431)
Q Consensus 329 -~-~~~~~~~~~~i~G~~C~~~D~l~~~--~~lp~l~~GD~l~i~~~GAY~~s~~s~fn~~p~p~~v~v~~g~~~~ir~r 404 (431)
. .......+....+.+++..=++-.. ...+.+++||.|.|.-.=+ |. .+|.++ .-+++++++..-...+
T Consensus 300 ~~~~~~g~~~~~~~~~~~s~EH~iv~~~~~~~~~~l~VGD~v~l~p~H~-c~----t~~~~~--~~~vv~~~~~~~~W~~ 372 (376)
T 3llx_A 300 QVCKIDGSVLDGLCVNSTSQEHGVIELSDAYQLEDFPVGHQLRIMPNHA-CA----TAAMHP--VYHVLMSDGSHNTWQR 372 (376)
T ss_dssp EEECTTSCEEEEEEBCEECSSCEEEECCTTCCGGGSCTTCEEEEECSCH-HH----HHTTCS--EEEEECTTSCEEEEEB
T ss_pred CCCCCCCCCCCCCEEEECCCCCCEEECCCCCCCCCCCCCCEEEEECCCC-CH----HHHCCC--EEEEEECCEEEEEECC
T ss_conf 2236778878982894104764279778987667899998999974863-75----677088--7999999989999608
No 22
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A*
Probab=99.75 E-value=3e-16 Score=129.00 Aligned_cols=307 Identities=15% Similarity=0.128 Sum_probs=201.2
Q ss_pred CCCEE-EEEHHHHHHHHHHHHHHCCCCCCEEEEEEECC----CCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCCE
Q ss_conf 99789-97799999999999986144797899964107----99999999997399-28986899986522125784312
Q gi|254780371|r 26 QTPFY-CYSTTAIEKNYLTFSNAFDGMDTMVCYALKAN----SNQAVIKTLAHLGS-GLDIVSEGELRRALAAPVPAERI 99 (431)
Q Consensus 26 gTP~y-V~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN----~~~~il~~l~~~G~-g~dv~S~~El~~al~~G~~~~~I 99 (431)
.++.| -+|++.|++|++.+++..+ +.+++-.+||| -...|.+.+.+.|+ +|-|++..|....+++|+...-+
T Consensus 5 ~~r~w~EIdl~ai~~N~~~ir~~~~--~~~i~aVVKAnAYGhG~~~va~~l~~~Gi~~faVa~i~EA~~LR~~g~~~~il 82 (386)
T 1vfs_A 5 PTRVYAEIDLDAVRANVRALRARAP--RSALMAVVKSNAYGHGAVPCARAAQEAGAAWLGTATPEEALELRAAGIQGRIM 82 (386)
T ss_dssp CSSEEEEEEHHHHHHHHHHHHTTST--TSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTTCCSEEE
T ss_pred CCCEEEEEEHHHHHHHHHHHHHHCC--CCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEE
T ss_conf 8717999869999999999997689--98399999250463879999999998698999981399999999718999858
Q ss_pred EECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 44477542012444420687233332202467687741133442158998723778674433322334445688711113
Q gi|254780371|r 100 VFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIH 179 (431)
Q Consensus 100 i~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~ 179 (431)
++.++ ++++++.+++++. .+.+.|+++++.+.+.+++.+++.+|-|.++ ||. .|+|+.++++.
T Consensus 83 il~~~--~~~~~~~~~~~~~-~~~i~s~~~l~~~~~~a~~~~~~~~vhlkiD------------TGM--~RlG~~~~e~~ 145 (386)
T 1vfs_A 83 CWLWT--PGGPWREAIETDI-DVSVSGMWALDEVRAAARAAGRTARIQLKAD------------TGL--GRNGCQPADWA 145 (386)
T ss_dssp ECCCC--TTCCHHHHHHTTC-EEEECSHHHHHHHHHHHHHHTSCEEEEEEBC------------SSC--CSSSBCHHHHH
T ss_pred EEECC--CCHHHHHHHHHCC-CEEECCHHHHHHHHHHHHHCCCCCEEEEEEC------------CCC--CCCCCCHHHHH
T ss_conf 99448--7058999986073-1354759999999999986499824999951------------677--86785837889
Q ss_pred HHHHH---HHHCCCCCHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCC---
Q ss_conf 45777---64156322002335564156-442048999999998876531026665268806873000266545531---
Q gi|254780371|r 180 SLYAY---ASTLPGVKISGVDMHIGSQI-DQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPS--- 252 (431)
Q Consensus 180 ~~~~~---~~~~~~l~l~GlH~H~GS~~-~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~--- 252 (431)
++++. ++..+++++.|+..|..+.- .+......-++...++...++..+.....+.++..-++-..++ ..+|
T Consensus 146 ~~~~~~~~~~~~~~l~~~Gi~TH~a~ad~~~~~~~~~Q~~~F~~~~~~l~~~~~~~~~~h~anS~~~l~~~~-~~~d~vR 224 (386)
T 1vfs_A 146 ELVGAAVAAQAEGTVQVTGVWSHFACADEPGHPSIRLQLDAFRDMLAYAEKEGVDPEVRHIANSPATLTLPE-THFDLVR 224 (386)
T ss_dssp HHHHHHHHHHHTTSEEEEEEECCCSSTTSTTCHHHHHHHHHHHHHHHHHHHTTCCCSEEEEECHHHHHHCGG-GCSSEEE
T ss_pred HHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHCCCCC-CCCCCCC
T ss_conf 999999986217964279998644555775306789999999999999997178861565158632017840-1487425
Q ss_pred --HHHHHHHHHHHHCCCCCEEEEEECCEECCCCCEEEEEEEEECCCC---------------CCCCEEECCCCCCCCCCH
Q ss_conf --145655565421024530344101112036632588876403468---------------974220055300011001
Q gi|254780371|r 253 --SSDYASLIHQYFGNLQCKIILEPGRFLVADVGILVTKVISIKKSA---------------DKTFVILDVAMNDFMRPT 315 (431)
Q Consensus 253 --~~~~~~~i~~~~~~~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~---------------~~~~~~vD~g~~~~~~p~ 315 (431)
+.-|+-....... .|-..=..++..+.++|..+|+-. +.+++++..|..+-..-.
T Consensus 225 ~Gi~lYG~~p~~~~~--------~~~~~~lkpv~~l~a~ii~v~~l~~G~~vgYg~~~~~~~~~~ia~v~iGYaDG~~r~ 296 (386)
T 1vfs_A 225 TGLAVYGVSPSPELG--------TPAQLGLRPAMTLRASLALVKTVPAGHGVSYGHHYVTESETHLALVPAGYADGIPRN 296 (386)
T ss_dssp ECGGGGTCCSCGGGC--------CTTTTTCCCCEEEEEECCEEEEECTTCEESGGGCEECSSSEEEEEECCCTTTTCCGG
T ss_pred CCEEEECCCCCCCCC--------CCCCCCCEEEEEEEEEEEEEEEECCCCCCCCCCCEEECCCCEEEEEECCHHCCCCCC
T ss_conf 531546677674447--------643457325579988988999878999657777454047856888703142076634
Q ss_pred HHCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECC
Q ss_conf 11024653222234677761589998100056666562100566888889999679
Q gi|254780371|r 316 LYDAYHEINYIVNPAGDRLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKT 371 (431)
Q Consensus 316 ~~~~~~~i~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~ 371 (431)
+.+. ...+. ..+.+-|.|..|+ |.+.-+..-+..++||.+.+..-
T Consensus 297 ~~~~---~~vli------~g~~~pivG~vsM--D~~~vDvtd~~~~~GD~V~l~G~ 341 (386)
T 1vfs_A 297 ASGR---GPVLV------AGKIRRAAGRIAM--DQFVVDLGEDLAEAGDEAVILGD 341 (386)
T ss_dssp GTTT---CEEEE------TTEEEEBCSCCCS--SCEEEEEETCCCCTTCEEEEECC
T ss_pred CCCC---EEEEE------CCEEEEEEEEECC--CEEEEECCCCCCCCCCEEEEEEC
T ss_conf 5797---06999------9999289649623--43899878987898999999978
No 23
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, internal aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis}
Probab=99.73 E-value=6.5e-15 Score=119.97 Aligned_cols=302 Identities=16% Similarity=0.139 Sum_probs=196.6
Q ss_pred EEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECC----CCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCCEEECCC
Q ss_conf 997799999999999986144797899964107----99999999997399-2898689998652212578431244477
Q gi|254780371|r 30 YCYSTTAIEKNYLTFSNAFDGMDTMVCYALKAN----SNQAVIKTLAHLGS-GLDIVSEGELRRALAAPVPAERIVFSGV 104 (431)
Q Consensus 30 yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN----~~~~il~~l~~~G~-g~dv~S~~El~~al~~G~~~~~Ii~~g~ 104 (431)
-++|++.|++|++.+++..+ +.+++-.+||| ....|.+.+.+.|+ +|-|++..|....+++|+...-+++.++
T Consensus 14 a~Idl~al~~N~~~ir~~~~--~~~i~aVVKanAYGhG~~~ia~~l~~~Gi~~faVa~i~EA~~LR~~g~~~~Il~l~~~ 91 (384)
T 1xfc_A 14 AMVDLGAIEHNVRVLREHAG--HAQLMAVVKADGYGHGATRVAQTALGAGAAELGVATVDEALALRADGITAPVLAWLHP 91 (384)
T ss_dssp EEEEHHHHHHHHHHHHHHHT--TSEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESCHHHHHHHHHTTCCSCEEECCCC
T ss_pred EEECHHHHHHHHHHHHHHCC--CCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCCCEEEECCC
T ss_conf 99939999999999997689--9839999925245378999999999779798999389999999982898866997079
Q ss_pred CCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 54201244442068723333220246768774113344215899872377867443332233444568871111345777
Q gi|254780371|r 105 GKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAY 184 (431)
Q Consensus 105 ~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~ 184 (431)
..++++.++++++ ...+.|+++++.+.+.+++.++..+|-|-|+ ||. .|.|+.++++.+++..
T Consensus 92 --~~~~~~~~~~~~~-~~~i~s~~~l~~l~~~~~~~~~~~~vhLkvD------------TGM--~RlG~~~~~~~~~~~~ 154 (384)
T 1xfc_A 92 --PGIDFGPALLADV-QVAVSSLRQLDELLHAVRRTGRTATVTVKVD------------TGL--NRNGVGPAQFPAMLTA 154 (384)
T ss_dssp --TTCCCHHHHHTTC-EEEECSHHHHHHHHHHHHHHCCCEEEEEEBC------------SSC--CSSSBCTTTHHHHHHH
T ss_pred --CHHHHHHHHHCCC-EEEECCHHHHHHHHHHHHHCCCCCEEEEEEE------------CCC--CCCCCCCHHHHHHHHH
T ss_conf --8788999975585-4663669999999999997399835999980------------798--8788780567999999
Q ss_pred HH---HCCCCCHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCC----CCCCCCHHHH
Q ss_conf 64---1563220023355641564-42048999999998876531026665268806873000266----5455311456
Q gi|254780371|r 185 AS---TLPGVKISGVDMHIGSQID-QIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHS----DHRPPSSSDY 256 (431)
Q Consensus 185 ~~---~~~~l~l~GlH~H~GS~~~-~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~----~~~~~~~~~~ 256 (431)
++ ..+++++.|+-.|..+--. +......-++...++...+++.+....+..+...-++-..+ +...+.+.-|
T Consensus 155 ~~~~~~~~~l~~~Gi~TH~a~ad~~~~~~~~~Q~~~F~~~~~~l~~~~~~~~~~~~~nS~~~~~~~~~~~d~vR~Gi~lY 234 (384)
T 1xfc_A 155 LRQAMAEDAVRLRGLMSHMVYADKPDDSINDVQAQRFTAFLAQAREQGVRFEVAHLSNSSATMARPDLTFDLVRPGIAVY 234 (384)
T ss_dssp HHHHHHTTSEEEEEEECCC-----CCSHHHHHHHHHHHHHHHHHHHTTCCCSEEECBCHHHHHHCGGGCCSEECCSGGGG
T ss_pred HHHHHHCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHCCCEECCCCEE
T ss_conf 98665347266745787677237887426799999999999877750898204455413666509422036531582013
Q ss_pred HHHHHHHHCCCCCEEEEEECCEECCCCCEEEEEEEEECCCCC---------------CCCEEECCCCCCCCCCHHHCCCC
Q ss_conf 555654210245303441011120366325888764034689---------------74220055300011001110246
Q gi|254780371|r 257 ASLIHQYFGNLQCKIILEPGRFLVADVGILVTKVISIKKSAD---------------KTFVILDVAMNDFMRPTLYDAYH 321 (431)
Q Consensus 257 ~~~i~~~~~~~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~---------------~~~~~vD~g~~~~~~p~~~~~~~ 321 (431)
+..-... .... + .-++..+.++|+.+|.-.. .+.+++..|..+...-.+.+
T Consensus 235 G~~p~~~--~~~~------~---l~pv~~l~a~i~~v~~~~~G~~vgYg~~~~~~~~~~ia~v~iGYaDG~~r~~~~--- 300 (384)
T 1xfc_A 235 GLSPVPA--LGDM------G---LVPAMTVKCAVALVKSIRAGEGVSYGHTWIAPRDTNLALLPIGYADGVFRSLGG--- 300 (384)
T ss_dssp TCCSSGG--GCCT------T---CCCCEEEEEECCEEEEECTTCEESGGGCEECSSCEEEEEECCCGGGTCCGGGTT---
T ss_pred CCCCCCC--CCCC------C---CCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHCCC---
T ss_conf 5667763--1000------4---676403543578888868999656676231567865999950110565521079---
Q ss_pred CCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEE-ECC-CCCCCCEEEEECCC
Q ss_conf 5322223467776158999810005666656210-056-68888899996797
Q gi|254780371|r 322 EINYIVNPAGDRLHIHADIVGPICETGDFIALNR-KIA-LPRPGDLLYIEKTG 372 (431)
Q Consensus 322 ~i~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~-~lp-~l~~GD~l~i~~~G 372 (431)
....+. ..+.+-|.|..|+ |.+.-+. ..| +.++||.+.+..-.
T Consensus 301 ~~~v~i------~G~~~piiG~isM--D~~~vDvt~~~~~v~vGD~V~l~G~~ 345 (384)
T 1xfc_A 301 RLEVLI------NGRRCPGVGRICM--DQFMVDLGPGPLDVAEGDEAILFGPG 345 (384)
T ss_dssp TCEEEE------TTEEEEEESCCCS--SCEEEEEESSSCCCCTTCEEEEECSS
T ss_pred CCEEEE------CCEEEEEECEECC--CCEEEEECCCCCCCCCCCEEEEECCC
T ss_conf 867998------9999788257556--61799925887779999999997189
No 24
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A*
Probab=99.73 E-value=2.3e-14 Score=116.19 Aligned_cols=333 Identities=14% Similarity=0.111 Sum_probs=209.5
Q ss_pred EEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECC----CCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCCEEECCC
Q ss_conf 997799999999999986144797899964107----99999999997399-2898689998652212578431244477
Q gi|254780371|r 30 YCYSTTAIEKNYLTFSNAFDGMDTMVCYALKAN----SNQAVIKTLAHLGS-GLDIVSEGELRRALAAPVPAERIVFSGV 104 (431)
Q Consensus 30 yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN----~~~~il~~l~~~G~-g~dv~S~~El~~al~~G~~~~~Ii~~g~ 104 (431)
.-+|++.|++|++.+++.++. +.+++--+||| -...|.+.+.+.|+ +|-|++..|....+++|+...=+++ ++
T Consensus 14 ~EIdl~al~~N~~~i~~~~~~-~~~i~aVVKanAYGhG~~~va~~l~~~Gi~~faVa~~~EA~~LR~~gi~~~Ilvl-~~ 91 (391)
T 2vd8_A 14 VEVDLDAIYNNVTHIXEFIPS-DVEIFAVVKGNAYGHDYVPVAXIALEAGATRLAVAFLDEALVLRRAGITAPILVL-GP 91 (391)
T ss_dssp EEEEHHHHHHHHHHHHHHSCT-TCEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTTCCSCEEEC-SC
T ss_pred EEEEHHHHHHHHHHHHHHCCC-CCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEE-EC
T ss_conf 998599999999999974799-9879999915026478899999999869899999169999999971999977997-48
Q ss_pred CCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC-CCHHHHH
Q ss_conf 542012444420687233332202467687741133442158998723778674433322334445688711-1134577
Q gi|254780371|r 105 GKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIH-QIHSLYA 183 (431)
Q Consensus 105 ~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~-~~~~~~~ 183 (431)
-.++++..++++++ ..++-|.++++.+.+.++ .+++.+|-|-+ +||. +|+|+.++ ++.++++
T Consensus 92 -~~~~~~~~~~~~~~-~~~i~s~~~l~~~~~~~~-~~~~~~vhlki------------DTGM--~RlG~~~~~e~~~~~~ 154 (391)
T 2vd8_A 92 -SPPRDINVAAENDV-ALTVFQXEWVDEAIXLWD-GSSTMXYHINF------------DSGM--GRIGIRERXELXGFLX 154 (391)
T ss_dssp -CCGGGHHHHHHTTE-EEECCCHHHHHHHHHHCC-SSCCEEEEEEB------------CSSC--CSSSBCCHHHHHHHHH
T ss_pred -CCHHHHHHHHHCCC-CEEECHHHHHHHHHHHHH-CCCCEEEEEEE------------CCCC--CCCCCCCHHHHHHHHH
T ss_conf -88256556542053-203405999999999860-46864899996------------3798--8678874146899999
Q ss_pred HHHHCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 76415632200233556415-64420489999999988765310266652688068730002665455311456555654
Q gi|254780371|r 184 YASTLPGVKISGVDMHIGSQ-IDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQ 262 (431)
Q Consensus 184 ~~~~~~~l~l~GlH~H~GS~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~ 262 (431)
.++..+++++.|+-.|..+- ..+.+....-++...++...+++.+..+..+.+..--++-..+ +..+|+-..+-.+--
T Consensus 155 ~i~~~~~l~i~Gi~THfa~ad~~~~~~~~~Q~~~F~~~~~~~~~~~~~~~~~h~anS~a~l~~~-~~~~d~VR~Gi~lYG 233 (391)
T 2vd8_A 155 SLEGAPFLELEGVYTHFATADEVETSYFDXQYNTFLEQLSWLXEFGVDPXFVHTANSAATLRFQ-GITFNAVRIGIAMYG 233 (391)
T ss_dssp HHTTCTTEEEEEEECCCSSTTSSSCHHHHHHHHHHHHHHHHHHHTTCCCCSEECCCHHHHTTCT-TCCTTEEEESTTTTT
T ss_pred HHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCC-CCCCCCEECCCCEEC
T ss_conf 9972899650367612276776540567899999999999998628983205522767664675-235773406820147
Q ss_pred HHCCCCCEEEEEECCE-ECCCCCEEEEEEEEECCCC---------------CCCCEEECCCCCCCCCCHHHCCCCCCCCC
Q ss_conf 2102453034410111-2036632588876403468---------------97422005530001100111024653222
Q gi|254780371|r 263 YFGNLQCKIILEPGRF-LVADVGILVTKVISIKKSA---------------DKTFVILDVAMNDFMRPTLYDAYHEINYI 326 (431)
Q Consensus 263 ~~~~~~~~l~~EPGR~-lva~ag~ll~~V~~vK~~~---------------~~~~~~vD~g~~~~~~p~~~~~~~~i~~~ 326 (431)
.. |..-..+..- -..++..+-++|..+|+-. +.+.+++..|..+-..-.+-+ .+ ++
T Consensus 234 ~~----p~~~~~~~~~~~Lkpv~~l~s~v~~i~~~~~G~~VgYg~~~~a~~~~~iavv~iGYaDG~~r~~~~--~~--v~ 305 (391)
T 2vd8_A 234 LS----PSVEIRPFLPFXLEPALSLHTXVAHIKQVIXGDGISYNVTYRTXTEEWIATVAIGYADGWLRRLQG--FE--VL 305 (391)
T ss_dssp CC----SCTTTGGGCSSCCCCCEEEEEEEEEEEEECTTCEESGGGCEECSSSEEEEEESCCGGGTCCGGGTT--CE--EE
T ss_pred CC----CCCCCCCCCCCCCCEEEEEEEECCEEEECCCCCCCCCCCEEECCCCEEEEEECEEECCCCCCCCCC--CE--EE
T ss_conf 77----763324455534322166541001069846999778676275136648988441806862304679--88--99
Q ss_pred CCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCC------CHHHH---------HHCCCCCCCCCEEE
Q ss_conf 2346777615899981000566665621005668888899996797------02333---------40277889866599
Q gi|254780371|r 327 VNPAGDRLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTG------AYGAV---------QSGTYNSRLLIPEI 391 (431)
Q Consensus 327 ~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~G------AY~~s---------~~s~fn~~p~p~~v 391 (431)
. ..+.+-|+|..|+ |.+.-+.. +++++||.+.+.... +-..+ +-+.. -+|.+.+
T Consensus 306 i------~G~~~pivGri~M--D~~~VDv~-~~v~~GD~v~l~G~~~~~~i~~~~~a~~~gti~yEil~~l--~~Rv~R~ 374 (391)
T 2vd8_A 306 V------NGXRVPIVGRVTM--DQFMIHLP-CEVPLGTXVTLIGRQGDEYISATEVAEYSGTINYEIITTI--SFRVPRI 374 (391)
T ss_dssp E------TTEEEEEESCCCS--SCEEEEES-SCCCTTCEEEEEEEETTEEECHHHHHHHTTSCHHHHHHTS--CTTSCEE
T ss_pred E------CCEECCEEEEECC--CEEEEECC-CCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHCC--CCCCCEE
T ss_conf 9------9988747457546--43799899-9999999899977999878899999998789613686087--8888759
Q ss_pred EEECCEEEEE
Q ss_conf 9988968999
Q gi|254780371|r 392 MVNGSQFHII 401 (431)
Q Consensus 392 ~v~~g~~~~i 401 (431)
.+++|+.--+
T Consensus 375 yv~~g~~~~~ 384 (391)
T 2vd8_A 375 FIRNGXVVEV 384 (391)
T ss_dssp EEETTEEEEE
T ss_pred EEECCEEEEE
T ss_conf 9979979999
No 25
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosphate; HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A*
Probab=99.69 E-value=2.8e-14 Score=115.64 Aligned_cols=304 Identities=16% Similarity=0.168 Sum_probs=191.2
Q ss_pred EEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECC----CCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCCEEECC
Q ss_conf 8997799999999999986144797899964107----99999999997399-289868999865221257843124447
Q gi|254780371|r 29 FYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKAN----SNQAVIKTLAHLGS-GLDIVSEGELRRALAAPVPAERIVFSG 103 (431)
Q Consensus 29 ~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN----~~~~il~~l~~~G~-g~dv~S~~El~~al~~G~~~~~Ii~~g 103 (431)
-..+|++.|++|++.+++.++ .+.++.--+||| -...|.+.+.+.|+ +|-|++..|....+++|++..-+++.+
T Consensus 10 ~l~Idl~al~~N~~~i~~~~~-~~~~i~aVVKanAYGhG~~~va~~l~~~Gi~~faVa~i~Ea~~LR~~g~~~~ilvl~~ 88 (371)
T 3e5p_A 10 RLHIDTQAITENVQKECQRLP-EGTALFAVVKANGYGHGAVESAKAAKKGGATGFCVALLDEAIELREAGVQDPILILSV 88 (371)
T ss_dssp EEEECHHHHHHHHHHHHHSSC-SSSEEEEECHHHHHTTCHHHHHHHHHHTTCCCEEESSHHHHHHHHTTTCCSCEEEEEE
T ss_pred EEEEEHHHHHHHHHHHHHHCC-CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEECC
T ss_conf 999969999999999997479-9897999994534647789999999987969999909999999997299994786415
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCCHHHHHH-HHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC-CCCCHHH
Q ss_conf 754201244442068723333220246768-77411334421589987237786744333223344456887-1111345
Q gi|254780371|r 104 VGKTIDEIDLALQSGIYCFNVESESELKTL-NQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIP-IHQIHSL 181 (431)
Q Consensus 104 ~~k~~~~l~~ai~~gv~~i~vDs~~el~~l-~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~-~~~~~~~ 181 (431)
+ .++++..++++++ .+++-|..+++.+ .+.+.+.+++.+|-|.++ ||. .|.|+. .+++..+
T Consensus 89 ~--~~~~~~~~~~~~l-~~~i~s~~~~~~~l~~~a~~~~~~~~vhLkiD------------TGM--~RlG~~~~ee~~~~ 151 (371)
T 3e5p_A 89 V--DLAYVPLLIQYDL-SVTVATQEWLEAALQQLTPESNTPLRVHLKVD------------TGM--GRIGFLTPEETKQA 151 (371)
T ss_dssp C--CGGGHHHHHHHTC-EEEECCHHHHHHHHHHHCSCCSCCBCEEEEBC------------SSS--CSSSBCSSHHHHHH
T ss_pred C--CCHHHHHHHHCCC-EEEECCHHHHHHHHHHHHHHCCCCEEEEEEEE------------CCC--CCCCCCCHHHHHHH
T ss_conf 6--8205789973796-69964099999999999874277647999993------------899--86798747899999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 77764156322002335564156442048999999998876531026665268806873000266545531145655565
Q gi|254780371|r 182 YAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIH 261 (431)
Q Consensus 182 ~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~ 261 (431)
++..+..+++.+.|+..|..+.-.....+ ..+....+.+.++........+.++..-++-..++ ..+++-..+-.+-
T Consensus 152 ~~~~~~~~~l~~~gi~tH~~~a~~~~~~~--~~~q~~~f~~~~~~~~~~~~~~h~~nS~~~l~~~~-~~~d~vR~Gi~lY 228 (371)
T 3e5p_A 152 VRFVQSHKEFLWEGIFTHFSTADEIDTSY--FEKQAGRFKAVLAVLEELPRYVHVSNSATALWHPD-VPGNMIRYGVAMY 228 (371)
T ss_dssp HHHHHHSTTBCCCEEECCCSCTTSSCCHH--HHHHHHHHHTTSSSCSCCCSEEECBCHHHHHHCTT-SSCSEEEECGGGG
T ss_pred HHHHHHCCCEEEECCEEEECCCCCCCCHH--HHHHHHHHHHHHHHHCCCCCEEEECCCHHHHCCCC-CCCCCCCCCHHHC
T ss_conf 99987412633302021001345666378--99999999999986313663366417667645853-3577451597431
Q ss_pred HHHCCCCCEEEEEECCEECCCCCEEEEEEEEECCCC---------------CCCCEEECCCCCCCCCCHHHCCCCCCCCC
Q ss_conf 421024530344101112036632588876403468---------------97422005530001100111024653222
Q gi|254780371|r 262 QYFGNLQCKIILEPGRFLVADVGILVTKVISIKKSA---------------DKTFVILDVAMNDFMRPTLYDAYHEINYI 326 (431)
Q Consensus 262 ~~~~~~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~---------------~~~~~~vD~g~~~~~~p~~~~~~~~i~~~ 326 (431)
-.... .... -| ..-.-++..+.++|+.+|+.. +.+.+++..|..+-..-.+.+ ..++
T Consensus 229 G~~p~-~~~~--~~-~~~lkpv~~l~a~Ii~v~~~~~G~~vGYg~~~~a~~~~~iaiv~iGYaDG~~r~~~~----~~v~ 300 (371)
T 3e5p_A 229 GLNPS-GNKL--AP-SYALKPALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQG----FTVL 300 (371)
T ss_dssp TCCTT-TTSS--CC-SSCCCCCEEEEEECCCEEEECTTCEESGGGCEECSSSEEEEEESCCGGGTCCGGGTT----CEEE
T ss_pred CCCCC-CCCC--CC-CCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCEEECCCCCCCCC----CEEE
T ss_conf 88987-7655--64-325415146489533889934898667676202577857999813620560100469----7699
Q ss_pred CCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEEC
Q ss_conf 23467776158999810005666656210056688888999967
Q gi|254780371|r 327 VNPAGDRLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEK 370 (431)
Q Consensus 327 ~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~ 370 (431)
. ..+.+-|.|..|+ |.+.-+.. ..+++||.+.+..
T Consensus 301 i------~G~~~pivG~isM--D~~~vDvt-~~~~vGD~v~l~G 335 (371)
T 3e5p_A 301 V------NGKRCEIVGRVCM--DQCMIRLA-EEVPVGPVVTLVG 335 (371)
T ss_dssp S------SSCEEEEESCCCS--SCEEEEES-SCCCSCCEEEEEE
T ss_pred E------CCEEEEEEEEECC--CEEEEECC-CCCCCCCEEEEEE
T ss_conf 9------9998468648534--43799888-9999999999985
No 26
>3oo2_A Alanine racemase 1; infectious diseases, center for structural of infectious diseases (csgid); 2.37A {Staphylococcus aureus subsp}
Probab=99.69 E-value=1.5e-13 Score=110.67 Aligned_cols=335 Identities=16% Similarity=0.181 Sum_probs=201.1
Q ss_pred HCCCCE-EEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECC----CCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCC
Q ss_conf 749978-997799999999999986144797899964107----99999999997399-289868999865221257843
Q gi|254780371|r 24 VVQTPF-YCYSTTAIEKNYLTFSNAFDGMDTMVCYALKAN----SNQAVIKTLAHLGS-GLDIVSEGELRRALAAPVPAE 97 (431)
Q Consensus 24 ~~gTP~-yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN----~~~~il~~l~~~G~-g~dv~S~~El~~al~~G~~~~ 97 (431)
++-.|. .-+|++.|++|++.+++..+ +.+++--+||| -...|.+.+.+.|+ +|-|++..|....+++|+...
T Consensus 7 ~~~R~t~leIdl~al~~N~~~ir~~~~--~~~i~aVVKAnAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~LR~~gi~~~ 84 (385)
T 3oo2_A 7 KYYRSAYMNVDLNAVASNFKVFSTLHP--NKTVMAVVKANAYGLGSVKVARHLMENGATFFAVATLDEAIELRMHGITAK 84 (385)
T ss_dssp CCCSSEEEEEEHHHHHHHHHHHHHHST--TSEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHTTTCCSE
T ss_pred CCCCCEEEEECHHHHHHHHHHHHHHCC--CCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCC
T ss_conf 106888999949999999999995589--985999996603648899999999986979999908999999996699985
Q ss_pred CEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHH-HHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12444775420124444206872333322024676877-41133442158998723778674433322334445688711
Q gi|254780371|r 98 RIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQ-RAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIH 176 (431)
Q Consensus 98 ~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~-~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~ 176 (431)
-+++ ++. .++++..++++++ ...+-|.++++.+.+ .+.+.++..+|-|-+ +||. +|+|+.++
T Consensus 85 Ilvl-~~~-~~~e~~~~~~~~l-~~~i~~~~~l~~~~~~~~~~~~~~~~vhLki------------DTGM--~RlG~~~~ 147 (385)
T 3oo2_A 85 ILVL-GVL-PAKDIDKAIQHRV-ALTVPSKQWLKEAIKNISGEQEKKLWLHIKL------------DTGM--GRLGIKDT 147 (385)
T ss_dssp EEEC-SCC-CGGGHHHHHHTTE-EEEECCHHHHHHHHHTCCSSCCSCEEEEEEB------------CCSS--CCSSBCSH
T ss_pred EEEE-CCC-CHHHHHHHHHHHH-HCEEEHHHHHHHHHHHHHHHCCCCEEEEEEE------------CCCC--CCCCCCCH
T ss_conf 5761-566-6266999997310-0144146666789999876348963799997------------5788--76788836
Q ss_pred C-CHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCC----CCCCC
Q ss_conf 1-134577764156322002335564156442048999999998876531026665268806873000266----54553
Q gi|254780371|r 177 Q-IHSLYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHS----DHRPP 251 (431)
Q Consensus 177 ~-~~~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~----~~~~~ 251 (431)
+ +.++++.++..+++++.|+..|..+-- +.+.+.. +.. +.+.++...........+...-++-..+ +...+
T Consensus 148 e~~~~~~~~~~~~~~l~i~Gi~SH~a~ad-~~~~~~~--~q~-~~f~~~~~~~~~~~~~h~anS~~~~~~~~~~~d~vR~ 223 (385)
T 3oo2_A 148 KTYQEVIEIIQQYEQLVFEGVFTHFACAD-EPGDMTT--EQY-QRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRP 223 (385)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEECCCSSTT-SSSSHHH--HHH-HHHHHHHHTSCCCSEEEEECHHHHHHCCCTTCCEECC
T ss_pred HHHHHHHHHHHHCCCEEEEEEEEECCCCC-CCCHHHH--HHH-HHHHHHHHHCCCCCCEECCCCHHHHCCCHHHCCEECC
T ss_conf 78999999975357457888986013344-3320448--999-9998876522686520012437565582765560234
Q ss_pred CHHHHHHHHHHHHCCCCCEEEEEECCEECCCCCEEEEEEEEECCCC---------------CCCCEEECCCCCCCCCCHH
Q ss_conf 1145655565421024530344101112036632588876403468---------------9742200553000110011
Q gi|254780371|r 252 SSSDYASLIHQYFGNLQCKIILEPGRFLVADVGILVTKVISIKKSA---------------DKTFVILDVAMNDFMRPTL 316 (431)
Q Consensus 252 ~~~~~~~~i~~~~~~~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~---------------~~~~~~vD~g~~~~~~p~~ 316 (431)
.+.-|+-.-.... ..+-+.-.-++..+.++|+.+|+-. +.+.+++..|..+-..-.+
T Consensus 224 Gi~lyG~~p~~~~--------~~~~~~~lkpv~~l~a~ii~i~~l~~G~~vgYg~~~~a~~~~~ia~v~iGYaDG~~r~~ 295 (385)
T 3oo2_A 224 GISLYGYYPSEYV--------QQKVKVHLKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIM 295 (385)
T ss_dssp CGGGGTCCSSHHH--------HHHCCCCCCCCEEEEEECCEEEEECTTCBCCCC--CBCSSCEEEEEESCCGGGTCCGGG
T ss_pred CEEEECCCCCCCC--------CCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCEEECCCCCCEEEEEEEEECCCCCCC
T ss_conf 2799865675321--------33222355650787777788998349986566860450677428999623005605236
Q ss_pred HCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCC---HH---HHHHCCCC-------
Q ss_conf 102465322223467776158999810005666656210056688888999967970---23---33402778-------
Q gi|254780371|r 317 YDAYHEINYIVNPAGDRLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGA---YG---AVQSGTYN------- 383 (431)
Q Consensus 317 ~~~~~~i~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GA---Y~---~s~~s~fn------- 383 (431)
-+ .+ .+. ..+.+-|.|..|+ |.+.-+.. ..++.||.+.+..-.. .+ .+.+.+-.
T Consensus 296 ~~--~~--v~i------~G~~~pivGri~M--D~~~vDv~-~~~~~GD~V~l~G~~~~~~~~~~~~A~~~~ti~yEilt~ 362 (385)
T 3oo2_A 296 QG--SF--VNV------NGHQCEVIGRVCM--DQTIVKVP-DQVKAGDSVILIDNHRESPQSVEVVAEKQHTINYEVLCN 362 (385)
T ss_dssp TT--CE--EEE------TTEEEEEESCCCS--SCEEEEEC-TTCCTTCEEEEECSCSSSTTSHHHHHHHTTSCHHHHHHH
T ss_pred CC--CE--EEE------CCEEEEEEEEECC--CCEEEECC-CCCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCCHHHHC
T ss_conf 89--88--999------9999258708656--71699889-999999999997289987889999999869950056408
Q ss_pred CCCCCEEEEEECCEEEEEE
Q ss_conf 8986659999889689998
Q gi|254780371|r 384 SRLLIPEIMVNGSQFHIIR 402 (431)
Q Consensus 384 ~~p~p~~v~v~~g~~~~ir 402 (431)
--+|.+.+.+++++..+..
T Consensus 363 l~~Rv~R~Y~~~~~~~~~~ 381 (385)
T 3oo2_A 363 LSRRLPRIYHDGDQRFVTN 381 (385)
T ss_dssp CCTTSCEEEEETTEEEEEC
T ss_pred CCCCCCEEEECCCEEEEEE
T ss_conf 7888883998996889751
No 27
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A*
Probab=99.68 E-value=1.3e-13 Score=111.20 Aligned_cols=334 Identities=16% Similarity=0.129 Sum_probs=205.5
Q ss_pred CCEE-EEEHHHHHHHHHHHHHHCCCCCCEEEEEEECC----CCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCCEE
Q ss_conf 9789-97799999999999986144797899964107----99999999997399-289868999865221257843124
Q gi|254780371|r 27 TPFY-CYSTTAIEKNYLTFSNAFDGMDTMVCYALKAN----SNQAVIKTLAHLGS-GLDIVSEGELRRALAAPVPAERIV 100 (431)
Q Consensus 27 TP~y-V~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN----~~~~il~~l~~~G~-g~dv~S~~El~~al~~G~~~~~Ii 100 (431)
-|.| =+|++.|++|++.+++..+ .+.+++--+||| -...|.+.+.+.|+ +|-|++..|....+++|++..-++
T Consensus 6 r~tw~eIdl~al~~N~~~i~~~~~-~~~~i~aVVKanAYGhG~~~ia~~l~~~Gv~~faVa~~~EA~~LR~~gi~~~ILv 84 (388)
T 1bd0_A 6 RDTWAEVDLDAIYDNVENLRRLLP-DDTHIMAVVKANAYGHGDVQVARTALEAGASRLAVAFLDEALALREKGIEAPILV 84 (388)
T ss_dssp SSEEEEEEHHHHHHHHHHHHHHSC-TTCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTTCCSCEEE
T ss_pred CCEEEEEEHHHHHHHHHHHHHHCC-CCCEEEEEEEEECCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEE
T ss_conf 878999969999999999997489-9897999991502648889999999986989999867999999997089985899
Q ss_pred ECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-CH
Q ss_conf 44775420124444206872333322024676877411334421589987237786744333223344456887111-13
Q gi|254780371|r 101 FSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQ-IH 179 (431)
Q Consensus 101 ~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~-~~ 179 (431)
+ ++. .++++..+++++. .+.+.+.+.++.+...+ +.+++.+|-|.+ +||. +|+|+.+++ +.
T Consensus 85 l-~~~-~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~-~~~~~~~vhLki------------DTGM--~RlG~~~~e~~~ 146 (388)
T 1bd0_A 85 L-GAS-RPADAALAAQQRI-ALTVFRSDWLEEASALY-SGPFPIHFHLKM------------DTGM--GRLGVKDEEETK 146 (388)
T ss_dssp C-SCC-CGGGHHHHHHTTE-EEEECCHHHHHHHHHHC-CCSSCEEEEEEB------------CSSS--CSSSBCSHHHHH
T ss_pred E-CCC-CHHHHHHHHHCCC-CCCCCCHHHHHHHHHHH-HCCCCEEEEEEE------------ECCC--CCCCCCCHHHHH
T ss_conf 6-178-8689999873266-64206299999888876-158863899998------------1688--867878278999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCC----CCCCHH
Q ss_conf 4577764156322002335564156-44204899999999887653102666526880687300026654----553114
Q gi|254780371|r 180 SLYAYASTLPGVKISGVDMHIGSQI-DQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDH----RPPSSS 254 (431)
Q Consensus 180 ~~~~~~~~~~~l~l~GlH~H~GS~~-~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~----~~~~~~ 254 (431)
.+++.++..+++++.|+..|..+-- .+.+...+.. ..+...++..+.....+.++..-++-..++. ..+.+-
T Consensus 147 ~~~~~i~~~~~l~~~Gi~tH~a~ad~~~~~~~~~q~---~~~~~~~~~~~~~~~~~h~anS~~~l~~~~~~~d~vR~Gi~ 223 (388)
T 1bd0_A 147 RIVALIERHPHFVLEGLYTHFATADEVNTDYFSYQY---TRFLHMLEWLPSRPPLVHCANSAASLRFPDRTFNMVRFGIA 223 (388)
T ss_dssp HHHHHHHHSTTEEEEEEECCCSSTTSSCCHHHHHHH---HHHHHHHTTCSSCCSEEECCCHHHHHHCTTSCTTEEEECGG
T ss_pred HHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHH---HHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCEECCEE
T ss_conf 999999858996167897024673223528899999---99999999753245406662567775395023760413368
Q ss_pred HHHHHHHHHHCCCCCEEEEEECC-EECCCCCEEEEEEEEECCCC---------------CCCCEEECCCCCCCCCCHHHC
Q ss_conf 56555654210245303441011-12036632588876403468---------------974220055300011001110
Q gi|254780371|r 255 DYASLIHQYFGNLQCKIILEPGR-FLVADVGILVTKVISIKKSA---------------DKTFVILDVAMNDFMRPTLYD 318 (431)
Q Consensus 255 ~~~~~i~~~~~~~~~~l~~EPGR-~lva~ag~ll~~V~~vK~~~---------------~~~~~~vD~g~~~~~~p~~~~ 318 (431)
-|+-...... ++.+ .=.-++..+-++|+.+|+-. +.+.+++..|..+-..-.+-+
T Consensus 224 lyG~~p~~~~---------~~~~~~~Lkpv~~l~a~ii~i~~~~~G~~VgYg~~~~a~~~~~ia~v~iGYaDG~~r~~~~ 294 (388)
T 1bd0_A 224 MYGLAPSPGI---------KPLLPYPLKEAFSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGWLRRLQH 294 (388)
T ss_dssp GGTCCSCGGG---------GGGCSSCCCCCEEEEEECSEEEEECTTCEESGGGCEECCSSEEEEEESCCGGGTCCGGGGG
T ss_pred EEECCCCCCC---------CCCCCCCCEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCC
T ss_conf 8843777665---------5444457505799999733677757998455575201577835999821402563201479
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCC------CHHHHHHCCCC-------CC
Q ss_conf 246532222346777615899981000566665621005668888899996797------02333402778-------89
Q gi|254780371|r 319 AYHEINYIVNPAGDRLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTG------AYGAVQSGTYN-------SR 385 (431)
Q Consensus 319 ~~~~i~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~G------AY~~s~~s~fn-------~~ 385 (431)
..++. ..+.+-|.|..|+ |.+.-+..- ..++||.+.+..-. +-..+.+.+-. --
T Consensus 295 ----~~V~i------~g~~~pivGrvsM--D~~~vDv~~-~~~vGD~V~l~G~~~~~~i~~~~~a~~~~ti~yEil~~l~ 361 (388)
T 1bd0_A 295 ----FHVLV------DGQKAPIVGRICM--DQCMIRLPG-PLPVGTKVTLIGRQGDEVISIDDVARHLETINYEVPCTIS 361 (388)
T ss_dssp ----CEEEE------TTEEEEEESCCCS--SCEEEECSS-CCCTTCEEEEEEEETTEEECHHHHHHHHTSCTTHHHHHSC
T ss_pred ----CEEEE------CCEEEEEEEEEEC--CEEEEECCC-CCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHCCC
T ss_conf ----88999------9998058628713--718998899-9999999999868998761899999986897134750878
Q ss_pred CCCEEEEEECCEEEEEEEC
Q ss_conf 8665999988968999824
Q gi|254780371|r 386 LLIPEIMVNGSQFHIIRPR 404 (431)
Q Consensus 386 p~p~~v~v~~g~~~~ir~r 404 (431)
+|.+.+.+++|+.--++..
T Consensus 362 ~Rv~R~Y~~~~~~~~~~~~ 380 (388)
T 1bd0_A 362 YRVPRIFFRHKRIMEVRNA 380 (388)
T ss_dssp TTSCEEEEETTEEEEEECT
T ss_pred CCCCEEEEECCEEEEEECC
T ss_conf 8787499489979887467
No 28
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infectious disease, iodide SOAK, LLP, CAT-scratch disease; HET: LLP; 2.04A {Bartonella henselae}
Probab=99.64 E-value=2e-14 Score=116.56 Aligned_cols=302 Identities=17% Similarity=0.118 Sum_probs=183.9
Q ss_pred EEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECC----CCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCCEEECC
Q ss_conf 8997799999999999986144797899964107----99999999997399-289868999865221257843124447
Q gi|254780371|r 29 FYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKAN----SNQAVIKTLAHLGS-GLDIVSEGELRRALAAPVPAERIVFSG 103 (431)
Q Consensus 29 ~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN----~~~~il~~l~~~G~-g~dv~S~~El~~al~~G~~~~~Ii~~g 103 (431)
.-.+|++.|++|++.+++..+ +.+++--+||| -...+.+.+.+.|+ +|-|++..|....+++|....-|++ +
T Consensus 22 ~a~Idl~ai~~N~~~i~~~~~--~~~i~aVVKanAYGhG~~~va~~l~~~Gv~~faVa~i~Ea~~LR~~g~~~~il~l-~ 98 (376)
T 3kw3_A 22 IATIDVRAIVANYRTLAQHVA--PTECSAVVKANAYGLGAHKIAPALYQAGCRTFFVAQIEEALQLKAVLPENVMIAL-L 98 (376)
T ss_dssp EEEECHHHHHHHHHHHHHHHT--TSEECEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHHSCSSCEEEE-T
T ss_pred EEEECHHHHHHHHHHHHHHCC--CCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCCCHHHH-H
T ss_conf 999829999999999997579--9829999977414165999999999869699999388999999972885425563-0
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 75420124444206872333322024676877411334421589987237786744333223344456887111134577
Q gi|254780371|r 104 VGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYA 183 (431)
Q Consensus 104 ~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~ 183 (431)
+....++.+.+.+++. +..+.|+++++.+.+.+++.+++.+|-|-++ ||. .|+|++++|+.++++
T Consensus 99 ~~~~~~~~~~~~~~~~-~~~v~s~~~l~~l~~~a~~~~~~~~vhlkvD------------TGM--~RlG~~~~e~~~~i~ 163 (376)
T 3kw3_A 99 NGFPHKAEEFVAQSGI-IPLLNSWSTIEDWQTLCQKKNKKFPAIIQVD------------TNM--SRLGLDKKELQKLIK 163 (376)
T ss_dssp TCCCTTCHHHHHHTTC-EEEECSHHHHHHHHHHHHHHTCCCEEEEEBC------------SSC--CSSSBCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCC-CCCCCCHHHHHHHHHHHHHCCCCCEEEEEEE------------CCC--CCCCCCHHHHHHHHH
T ss_conf 6797789999874123-4400659999999988986388714999984------------899--847888689999988
Q ss_pred HHHHCCCCCHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 764156322002335564156-4420489999999988765310266652688068730002665455311456555654
Q gi|254780371|r 184 YASTLPGVKISGVDMHIGSQI-DQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQ 262 (431)
Q Consensus 184 ~~~~~~~l~l~GlH~H~GS~~-~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~ 262 (431)
.++.++++++.|+-.|..+-- .+..... .....+..... +.+...+.+.---++-.. .+...|+-..+-.+-
T Consensus 164 ~i~~~~~l~i~Gi~THfa~ad~~~~~~~~---~q~~~~~~~~~--~~~~~~~h~~NSag~~~~-~~~~~d~vR~Gi~lY- 236 (376)
T 3kw3_A 164 NPTIFEKAEIKYILSHLANGEDASHSSNN---KQLAAFKRVLA--QLPTCKVSFANSGGIFLG-SDFYFDLVRPGIALY- 236 (376)
T ss_dssp CCTHHHHSEEEEEECCCSSTTCTTCHHHH---HHHHHHHHHHT--TSCCCCEECCCHHHHTTC-GGGTTTEECCSGGGG-
T ss_pred HHHHCCCCEEEEEEEEEECCCCCCCHHHH---HHHHHHHHHHH--HCCCCCCCCCCCHHHHCC-CHHCCCCEECCEEEE-
T ss_conf 76640474377898776135567828899---99999999975--177546555476998639-232146420340252-
Q ss_pred HHCCCCCEEEEEECCEECCCCCEEEEEEEEECCCC---------------CCCCEEECCCCCCCCCCHHHCCCCCCCCCC
Q ss_conf 21024530344101112036632588876403468---------------974220055300011001110246532222
Q gi|254780371|r 263 YFGNLQCKIILEPGRFLVADVGILVTKVISIKKSA---------------DKTFVILDVAMNDFMRPTLYDAYHEINYIV 327 (431)
Q Consensus 263 ~~~~~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~---------------~~~~~~vD~g~~~~~~p~~~~~~~~i~~~~ 327 (431)
+.. +. .....-..++..+-++|..+|+-. +.+.+++..|..+-..-.+.+. ...+.
T Consensus 237 --G~~-p~---~~~~~~l~pv~~l~s~i~~vk~v~~G~~VgYg~~~~a~~~~~ia~v~vGYaDG~~R~~~~~---~~V~i 307 (376)
T 3kw3_A 237 --GVD-PH---GKHPTPLKAVVKVEAQVLQSRFIDAGIPVGYRESFMTRRPSTLATISIGYADGWPRILSNK---GTVYF 307 (376)
T ss_dssp --TCC-TT---CCSSCSCCCCEEEEEEEEEEEEC----------------CCEEEEESCCGGGTCCGGGTTT---CEEEE
T ss_pred --CCC-CC---CCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCEECCCCEEEEEECCCCCCCCCCCCCCC---CEEEE
T ss_conf --577-64---3422235655069999865445448986666872333787499850453467755234788---57999
Q ss_pred CCCCCCCEEEEEEEEEECCCCCEEEEEEE-CC-CCCCCCEEEEECCC
Q ss_conf 34677761589998100056666562100-56-68888899996797
Q gi|254780371|r 328 NPAGDRLHIHADIVGPICETGDFIALNRK-IA-LPRPGDLLYIEKTG 372 (431)
Q Consensus 328 ~~~~~~~~~~~~i~G~~C~~~D~l~~~~~-lp-~l~~GD~l~i~~~G 372 (431)
..+.+-|.|..|+ |.+.-|.. +| .+++||.+.+..-.
T Consensus 308 ------~g~~~~ivGrisM--D~~~vDvt~~~~~~~vGD~V~l~G~~ 346 (376)
T 3kw3_A 308 ------NGHKLPIVGHISM--DSIIVDATDLDKKPQRGDWVELIGPH 346 (376)
T ss_dssp ------TTEEEEBCSCCCS--SCEEEECTTCSSCCCTTCEEEEEBTT
T ss_pred ------CCEEEEEEEEECC--CEEEEECCCCCCCCCCCCEEEEEECC
T ss_conf ------9998279628635--34899877887779999999998199
No 29
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum}
Probab=99.61 E-value=1.7e-13 Score=110.36 Aligned_cols=300 Identities=13% Similarity=0.128 Sum_probs=184.1
Q ss_pred EEEHHHHHHHHHHHHHHCCCCCCEEEEEEECC----CCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCCEEECCCC
Q ss_conf 97799999999999986144797899964107----99999999997399-28986899986522125784312444775
Q gi|254780371|r 31 CYSTTAIEKNYLTFSNAFDGMDTMVCYALKAN----SNQAVIKTLAHLGS-GLDIVSEGELRRALAAPVPAERIVFSGVG 105 (431)
Q Consensus 31 V~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN----~~~~il~~l~~~G~-g~dv~S~~El~~al~~G~~~~~Ii~~g~~ 105 (431)
-+|++.|++|++.+++..+ +.+++--+||| -...|.+.+.+.|+ +|-|++..|....+++|+...-+++.++
T Consensus 7 ~IdL~al~~N~~~i~~~~~--~~~i~aVVKAnAYGhG~~~va~~l~~~Gv~~faVa~~~Ea~~LR~~g~~~~Ilil~~~- 83 (361)
T 2dy3_A 7 KIDLDAIAHNTRVLKQMAG--PAKLMAVVKANAYNHGVEKVAPVIAAHGADAFGVATLAEAMQLRDIGISQEVLCWIWT- 83 (361)
T ss_dssp EECHHHHHHHHHHHHHHHT--TSEEEEECHHHHHHTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTTCCSEEEECCCC-
T ss_pred EEEHHHHHHHHHHHHHHCC--CCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEECCC-
T ss_conf 9859999999999985679--9849999945546378999999999869499998329999999973899976875588-
Q ss_pred CCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 42012444420687233332202467687741133442158998723778674433322334445688711113457776
Q gi|254780371|r 106 KTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYA 185 (431)
Q Consensus 106 k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~ 185 (431)
.+++++.+++++. .+.+-|..+++.+. ...+++.+|-|-+ +||. +|.|++++|+.++++.+
T Consensus 84 -~~~~~~~~~~~~~-~~~v~s~~~~~~~~---~~~~~~~~vhLkv------------DTGM--~RlG~~~~e~~~~~~~~ 144 (361)
T 2dy3_A 84 -PEQDFRAAIDRNI-DLAVISPAHAKALI---ETDAEHIRVSIKI------------DSGL--HRSGVDEQEWEGVFSAL 144 (361)
T ss_dssp -TTSCHHHHHTTTC-EEEECSHHHHHHHH---TSCCSCEEEEEEB------------CCSS--CSSSBCHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHCC-CEEECCHHHHHHHH---HHHCCCCEEEEEE------------CCCC--CCCCCCHHHHHHHHHHH
T ss_conf -7488999997277-41550289989999---9727886499998------------7899--76798979999989998
Q ss_pred HHCCCCCHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCC----CCCCCCCCHHHHHHHH
Q ss_conf 4156322002335564156-4420489999999988765310266652688068730002----6654553114565556
Q gi|254780371|r 186 STLPGVKISGVDMHIGSQI-DQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAY----HSDHRPPSSSDYASLI 260 (431)
Q Consensus 186 ~~~~~l~l~GlH~H~GS~~-~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y----~~~~~~~~~~~~~~~i 260 (431)
...+++++.|+..|..+-- .+......-++.-.++.+.++..+..+....+..--++-. +.+-..+.+.-|+-.
T Consensus 145 ~~~~~l~~~gi~tH~a~ad~~d~~~~~~Q~~~F~~~~~~l~~~~~~~~~~h~anS~~~~~~~~~~~d~vR~Gi~lYG~~- 223 (361)
T 2dy3_A 145 AAAPHIEVTGMFTHLACADEPENPETDRQIIAFRRALALARKHGLECPVNHVCNSPAFLTRSDLHMEMVRPGLAFYGLE- 223 (361)
T ss_dssp HTCTTEEEEEEECCCC--------CHHHHHHHHHHHHHHHHHTTCCCCSCBCCCHHHHHHCGGGCTTEECCCGGGGTCC-
T ss_pred HHCCCCCEECCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHCCCHHCCCEEECCEEEECCC-
T ss_conf 7435611320123540468765526899999999999998752786405565153666539410166230140476667-
Q ss_pred HHHHCCCCCEEEEEECCEECCCCCEEEEEEEEECCCC---------------CCCCEEECCCCCCCCCCHHHCCCCCCCC
Q ss_conf 5421024530344101112036632588876403468---------------9742200553000110011102465322
Q gi|254780371|r 261 HQYFGNLQCKIILEPGRFLVADVGILVTKVISIKKSA---------------DKTFVILDVAMNDFMRPTLYDAYHEINY 325 (431)
Q Consensus 261 ~~~~~~~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~---------------~~~~~~vD~g~~~~~~p~~~~~~~~i~~ 325 (431)
...+... -.-++..+-++|..+|+-. +.+.+++..|..+-..-.+.+. ..+
T Consensus 224 ----~~~~~~~-------~l~pv~~l~a~i~~vr~~~~G~~vgYg~~~~~~~~~~ia~i~iGYaDG~~r~~~~~---~~v 289 (361)
T 2dy3_A 224 ----PVAGLEH-------GLKPAMTWEAKVSVVKQIEAGQGTSYGLTWRAEDRGFVAVVPAGYADGMPRHAQGK---FSV 289 (361)
T ss_dssp ----SSTTCCC-------SCCCCEEEEEECCEEEECC---------------CCEEEEESCCTTTTCCGGGTTT---CEE
T ss_pred ----CCCCCCC-------CCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCC---CEE
T ss_conf ----7754234-------67853133321136799348986664543114777159997020346654213798---379
Q ss_pred CCCCCCCCCEEEEEEEEEECCCCCEEEEEE-ECC-CCCCCCEEEEECCCCHH
Q ss_conf 223467776158999810005666656210-056-68888899996797023
Q gi|254780371|r 326 IVNPAGDRLHIHADIVGPICETGDFIALNR-KIA-LPRPGDLLYIEKTGAYG 375 (431)
Q Consensus 326 ~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~-~lp-~l~~GD~l~i~~~GAY~ 375 (431)
+. ..+.+-|.|..|+ |.+.-+. ..| .+++||.+.+..--..+
T Consensus 290 ~i------~g~~~pivGrvsM--D~~~vdvt~~~~~~~~Gd~V~l~G~~~~~ 333 (361)
T 2dy3_A 290 TI------DGLDYPQVGRVCM--DQFVISLGDNPHGVEAGAKAVIFGENGHD 333 (361)
T ss_dssp EE------TTEEEEEESCCCS--SCEEEEEETCTTCCCTTCEEEEESTTSCC
T ss_pred EE------CCEEEEEEEEECC--CEEEEECCCCCCCCCCCCEEEEECCCCCC
T ss_conf 98------9999117648537--61799866884558999999997899999
No 30
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, NYSGXRC, PLP, TIM barrel, structural genomics; HET: PLP; 1.70A {Oenococcus oeni psu-1}
Probab=99.60 E-value=3.7e-13 Score=108.05 Aligned_cols=330 Identities=16% Similarity=0.120 Sum_probs=191.3
Q ss_pred CEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECC----CCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCCEEEC
Q ss_conf 78997799999999999986144797899964107----99999999997399-28986899986522125784312444
Q gi|254780371|r 28 PFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKAN----SNQAVIKTLAHLGS-GLDIVSEGELRRALAAPVPAERIVFS 102 (431)
Q Consensus 28 P~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN----~~~~il~~l~~~G~-g~dv~S~~El~~al~~G~~~~~Ii~~ 102 (431)
...-+|++.|++|++.+++..+ +.+++-.+||| -...+.+.+.+.|+ +|-|++..|....+++|++. .|+.-
T Consensus 10 t~leIdl~al~~N~~~ir~~~~--~~~i~aVVKanAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~LR~~gi~~-~Ilvl 86 (380)
T 3co8_A 10 TRIEFSKSSLAYNVQYTKQVSG--AKTLWLAVKSNAYGHGLLQVSKIARECGVDGLAVSVLDEGIAIRQAGIDD-FILIL 86 (380)
T ss_dssp CEEEECHHHHHHHHHHHHHHHC--CSEEEEECHHHHHTTCHHHHHHHHGGGTCCEEEESSHHHHHHHHHTTCCC-CEEEC
T ss_pred EEEEEEHHHHHHHHHHHHHHCC--CCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCC-CEEEE
T ss_conf 7999839999999999985579--98499999743464789999999998697999991999999999739998-38997
Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC-CCHHH
Q ss_conf 77542012444420687233332202467687741133442158998723778674433322334445688711-11345
Q gi|254780371|r 103 GVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIH-QIHSL 181 (431)
Q Consensus 103 g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~-~~~~~ 181 (431)
+|. .++++..++++++ +.++.|.++++.+.+.+.+ ++.+|-|-+ +||. +|+|+..+ ++.++
T Consensus 87 ~~~-~~~~~~~~~~~~l-~~~i~s~~~l~~l~~~~~~--~~~~VhLki------------DTGM--~RlG~~~~~~~~~~ 148 (380)
T 3co8_A 87 GPI-DVKYAPIASKYHF-LTTVSSLDWLKSADKILGK--EKLSVNLAV------------DTGM--NRIGVRSKKDLKDE 148 (380)
T ss_dssp SCC-CGGGHHHHHHTTC-EEEECCHHHHHHHHHHCTT--CCEEEEEEB------------CSSS--CSSSBCSHHHHHHH
T ss_pred ECC-CHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHCC--CCCEEEEEE------------ECCC--CCCCCCCHHHHHHH
T ss_conf 254-2123368887253-1000249999999997346--884389998------------2689--86777734678999
Q ss_pred HHHHHHC-CCCCHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCC--CCHHHHH
Q ss_conf 7776415-6322002335564156-4420489999999988765310266652688068730002665455--3114565
Q gi|254780371|r 182 YAYASTL-PGVKISGVDMHIGSQI-DQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRP--PSSSDYA 257 (431)
Q Consensus 182 ~~~~~~~-~~l~l~GlH~H~GS~~-~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~--~~~~~~~ 257 (431)
++.+++. +++++.|+..|..+-- .+.+......+...++.+.+.. ..+..+.-.++ ..+.....+ .++-..+
T Consensus 149 ~~~l~~~~~~l~~~Gi~SHfa~ad~~~~~~~~~q~~~f~~~~~~l~~--~~~~~~~~~~a--~~~~~~~~~~~~d~vR~G 224 (380)
T 3co8_A 149 IEFLQEHSDHFSYDGIFTHFASSDNPDDHYFQRQKNRWYELIDGLIM--PRYVHVMNSGA--AMYHSKELPGCNSIARVG 224 (380)
T ss_dssp HHHHHHCTTTEEEEEEECCCC---------CHHHHHHHHHHHTTSCC--CSEEECBCHHH--HHHCGGGCTTSCSEEEES
T ss_pred HHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCC--CCCHHHHCHHH--HHCCCHHCCCCCCCCCCC
T ss_conf 99976411354400266202366777647889999999999974357--53145533165--635811156432234677
Q ss_pred HHHHHHHCCCCCEEEEEECCEECCCCCEEEEEEEEECCCC---------------CCCCEEECCCCCCCCCCHHHCCCCC
Q ss_conf 5565421024530344101112036632588876403468---------------9742200553000110011102465
Q gi|254780371|r 258 SLIHQYFGNLQCKIILEPGRFLVADVGILVTKVISIKKSA---------------DKTFVILDVAMNDFMRPTLYDAYHE 322 (431)
Q Consensus 258 ~~i~~~~~~~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~---------------~~~~~~vD~g~~~~~~p~~~~~~~~ 322 (431)
-.+--.... ......+ .-.-++..+-++|..+|+-. +.+.+++..|..+-....+-+
T Consensus 225 i~lYG~~p~--~~~~~~~--~~lkpv~~l~a~i~~ik~v~~G~~VgYg~~~~~~~~~~iavv~iGYaDG~~r~~~~---- 296 (380)
T 3co8_A 225 TVVYGVEPS--EGVLGPI--DKLKPVFELKSALTFVKKIPAGEGISYGSKFVTSRDTWIGTLPIGYGDGWLAEYQD---- 296 (380)
T ss_dssp TTTTTCCTT--TTSSSCG--GGSCCCEEEEEECSEEEEECTTCEESGGGCEECSSSEEEEEESCCGGGTCCGGGTT----
T ss_pred CEEECCCCC--CCCCCCC--CCCCCCEEEEEECCCCEEECCCCCCCCCCCEECCCCEEEEEEEEECCCCCCCCCCC----
T ss_conf 222456787--4444510--03773189975211314648998666666310378728999801613551520479----
Q ss_pred CCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCC------CHHHHHHCCC-------CCCCCCE
Q ss_conf 32222346777615899981000566665621005668888899996797------0233340277-------8898665
Q gi|254780371|r 323 INYIVNPAGDRLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTG------AYGAVQSGTY-------NSRLLIP 389 (431)
Q Consensus 323 i~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~G------AY~~s~~s~f-------n~~p~p~ 389 (431)
..++. ..+.+-|+|..|+ |.+.-+.. ...++||.+.+..-. +..++.+.+- .--+|.+
T Consensus 297 ~~v~i------~G~~~pivGrisM--D~~~vdv~-~~~~vGD~V~l~G~~~~~~~~~~~~a~~~~ti~yEil~~l~~Rv~ 367 (380)
T 3co8_A 297 FQLLI------DGQKCRQVGQIAM--DQMMVALP-HEYPIGTEVTLIGKSGKYENTLYDLHKHSGVPPWKITVAFSDRLK 367 (380)
T ss_dssp CEEEE------TTEEEEEESCCCS--SCEEEEES-SCCCTTCEEEEEEEETTEEECHHHHHHHHSCCHHHHHHTCCTTSE
T ss_pred CEEEE------CCEEEEECCEECC--CEEEEECC-CCCCCCCEEEEEECCCCCCCCHHHHHHHHCCCHHHHHHCCCCCCC
T ss_conf 87999------9999027157334--60699899-999999999998489988789999999879956578627788888
Q ss_pred EEEEECCEEE
Q ss_conf 9999889689
Q gi|254780371|r 390 EIMVNGSQFH 399 (431)
Q Consensus 390 ~v~v~~g~~~ 399 (431)
.+.|++|..+
T Consensus 368 R~yv~~g~~~ 377 (380)
T 3co8_A 368 RMVVDEGHHH 377 (380)
T ss_dssp EEEC------
T ss_pred EEEEECCCCC
T ss_conf 7998188566
No 31
>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1}
Probab=99.58 E-value=7.3e-13 Score=106.02 Aligned_cols=308 Identities=15% Similarity=0.133 Sum_probs=180.9
Q ss_pred CCE-EEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECC----CCHHHHHHHHHCC-C-CEEEECHHHHHHHHHCCCCCCCE
Q ss_conf 978-997799999999999986144797899964107----9999999999739-9-28986899986522125784312
Q gi|254780371|r 27 TPF-YCYSTTAIEKNYLTFSNAFDGMDTMVCYALKAN----SNQAVIKTLAHLG-S-GLDIVSEGELRRALAAPVPAERI 99 (431)
Q Consensus 27 TP~-yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN----~~~~il~~l~~~G-~-g~dv~S~~El~~al~~G~~~~~I 99 (431)
-|. .-+|++.|++|++.+++..+ +.+++-.+||| -...|.+.+.+.| + +|-|++..|....+++|++..-+
T Consensus 8 R~t~~eIdl~al~~N~~~ir~~~~--~~~i~aVVKanAYGhG~~~va~~l~e~~g~d~faVa~ieEa~~LR~~g~~~~Il 85 (395)
T 3hur_A 8 RPTWVSVDLDAAAHNLQEIREWTK--AKKVYAVLKADGYGLGAIPLAKAFQETASADALIVSNLDEALELRQADLTLPIW 85 (395)
T ss_dssp CCEEEEEEHHHHHHHHHHHHHHHT--CSEEEEECCHHHHHTCHHHHHHHHHHTTCCSEEEESCHHHHHHHHHTTCCSCEE
T ss_pred CCEEEEEEHHHHHHHHHHHHHHCC--CCEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCEEE
T ss_conf 998999849999999999996689--985999996622648889999999987899999992999999999669998399
Q ss_pred EECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-C
Q ss_conf 444775420124444206872333322024676877411334421589987237786744333223344456887111-1
Q gi|254780371|r 100 VFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQ-I 178 (431)
Q Consensus 100 i~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~-~ 178 (431)
++ ++ .+++++..++++++ +.++.|+++++.+.+ .+++.+|-|- ++||. +|+|+..++ +
T Consensus 86 vl-~~-~~~~e~~~~~~~~l-~~~i~s~~~l~~~~~----~~~~~~vhlk------------iDTGM--~RlG~~~~d~~ 144 (395)
T 3hur_A 86 VL-GA-WDYSDLKLFIDHDI-VITIPSLAWLQNLPD----FEGTLKVSLA------------IDTGM--TRIGFDKADEI 144 (395)
T ss_dssp ES-SC-CCGGGHHHHHHTTE-EEEECCHHHHHTCCC----CSSCEEEEEE------------BCCSS--CSSSBCCHHHH
T ss_pred EE-CC-CCHHHHHHHHHHHH-CCCCCHHHHHHHHHH----HCCCCEEEEE------------ECCCC--CCCCCCCHHHH
T ss_conf 96-68-89799999998432-343006888866675----1687359999------------81788--87898806789
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCC--CCCCCHHH
Q ss_conf 345777641563220023355641564-420489999999988765310266652688068730002665--45531145
Q gi|254780371|r 179 HSLYAYASTLPGVKISGVDMHIGSQID-QIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSD--HRPPSSSD 255 (431)
Q Consensus 179 ~~~~~~~~~~~~l~l~GlH~H~GS~~~-~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~--~~~~~~~~ 255 (431)
..+.+...+.+++++.|+..|..+--. +........+....+.+.....+++...+.+..--++-+..+ +..+++-.
T Consensus 145 ~~~~~~~~~~~~l~l~Gi~SHla~ad~~~~~~~~~~~~q~~~f~~~~~~~~~~~~~~h~~nSa~~l~~~~~p~~~~d~vR 224 (395)
T 3hur_A 145 SAAKKIIDKNPQLDLFSVYTHFATADEAGEKSKAYFEEQLRRWQELTINQGFDPSLFSMANSATCIWHHDDPRISFAAIR 224 (395)
T ss_dssp HHHHHHHHHCTTEEEEEEECCCTTTTSCSHHHHHHHHHHHHHHHHHHTTSCCCGGGEECCCHHHHHHTTTCTTSCCSEEC
T ss_pred HHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCCCCCCCCCEEE
T ss_conf 99999998568862799976114666334211689999999999999845998426651240446632577010463475
Q ss_pred HHHHHHHHHCCCCCEEEEEECCEECCCCCEEEEEEEEECCCC---------------CCCCEEECCCCCCCCCCHHHCCC
Q ss_conf 655565421024530344101112036632588876403468---------------97422005530001100111024
Q gi|254780371|r 256 YASLIHQYFGNLQCKIILEPGRFLVADVGILVTKVISIKKSA---------------DKTFVILDVAMNDFMRPTLYDAY 320 (431)
Q Consensus 256 ~~~~i~~~~~~~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~---------------~~~~~~vD~g~~~~~~p~~~~~~ 320 (431)
.+..+--.... ..+.... -..-..++..+.++|..+|+.. +.+.+++..|..+-....+-+
T Consensus 225 ~Gi~lYG~~p~-~~~~~~~-~~~~l~pv~sl~a~Ii~vr~~~~G~~vGYg~~~~a~~~~~iavv~iGYaDG~~r~~~~-- 300 (395)
T 3hur_A 225 PGQLISGVNVS-NGELKMP-PNLHLERIFSVCSEIADVRFVKKDQSLSYGASERMPEDGYVATLPFGYNDGWLRRMQK-- 300 (395)
T ss_dssp CCGGGGTCCTT-TTSSCCC-TTCCCCCCEEEEEECCEEEEECTTCBSSTTCSCBCSSSEEEEEESCCTTCGGGGGEEE--
T ss_pred ECCCCCCCCCC-CCCCCCC-CCCCCCCHHHHHHHCCEEEEECCCCEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCC--
T ss_conf 11201366677-5433456-5434453133201001147715897262155412577725997226656883300479--
Q ss_pred CCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCC
Q ss_conf 6532222346777615899981000566665621005668888899996797
Q gi|254780371|r 321 HEINYIVNPAGDRLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTG 372 (431)
Q Consensus 321 ~~i~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~G 372 (431)
..++.+ .+.+-|.|..|+ |.+.-+.. ...+.||.+.+....
T Consensus 301 --~~vli~------G~~~pivG~isM--D~~~vdv~-~~~~vGD~V~l~G~~ 341 (395)
T 3hur_A 301 --SSVIIN------GKRMPIIGRITM--DQTMVKLD-RKYPIGTRVTLIGKD 341 (395)
T ss_dssp --EEEEET------TEEEEBCSCCCS--SCEEEECS-SCCCTTCEEEEEESS
T ss_pred --CEEEEC------CEEEEEEEEECC--CEEEEECC-CCCCCCCEEEEEECC
T ss_conf --879999------999898618834--52899898-999999999999589
No 32
>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A*
Probab=99.52 E-value=2e-12 Score=103.01 Aligned_cols=300 Identities=12% Similarity=0.074 Sum_probs=178.9
Q ss_pred EEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECC----CCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCCEEECC
Q ss_conf 8997799999999999986144797899964107----99999999997399-289868999865221257843124447
Q gi|254780371|r 29 FYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKAN----SNQAVIKTLAHLGS-GLDIVSEGELRRALAAPVPAERIVFSG 103 (431)
Q Consensus 29 ~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN----~~~~il~~l~~~G~-g~dv~S~~El~~al~~G~~~~~Ii~~g 103 (431)
--.+|++.|++|++.+++.. +.+++--+||| -...+.+.+. .|+ +|-|++..|....+++|+...-+++.+
T Consensus 5 ~~eIdl~al~~N~~~lr~~~---~~ki~aVVKanAYGhG~~~ia~~L~-~g~~~faVa~~~Ea~~LR~~g~~~~il~l~~ 80 (357)
T 1rcq_A 5 RALIDLQALRHNYRLAREAT---GARALAVIKADAYGHGAVRCAEALA-AEADGFAVACIEEGLELREAGIRQPILLLEG 80 (357)
T ss_dssp EEEEEHHHHHHHHHHHHHHH---CSEEEEECHHHHHTTCHHHHHHHHT-TTCSEEEESSHHHHHHHHHTTCCSCEEETTC
T ss_pred EEEEEHHHHHHHHHHHHCCC---CCCEEEEEEECCCCCCHHHHHHHHH-HCCCEEEEEEHHHHHHHHHHCCCCCEECCCC
T ss_conf 99984999999999997066---9949999966535387999999999-5699799989999999997099642011001
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 75420124444206872333322024676877411334421589987237786744333223344456887111134577
Q gi|254780371|r 104 VGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYA 183 (431)
Q Consensus 104 ~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~ 183 (431)
.-+.++++.+.++++ .+++.|.++++.+.+.. .+++.+|-|-+ +||. +|+|+..+|+.++++
T Consensus 81 -~~~~~~~~~~~~~~i-~~~i~s~~~~~~l~~~~--~~~~~~vhLkv------------DTGM--~RlG~~~~e~~~~~~ 142 (357)
T 1rcq_A 81 -FFEASELELIVAHDF-WCVVHCAWQLEAIERAS--LARPLNVWLKM------------DSGM--HRVGFFPEDFRAAHE 142 (357)
T ss_dssp -CSSGGGHHHHHHTTE-EEEECSHHHHHHHHHCC--CSSCEEEEEEB------------CSSS--CSSSBCHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHCC-CCCCCHHHHHHHHHHHC--CCCCEEEEEEE------------CCCC--CCCCCCHHHHHHHHH
T ss_conf -355778898886314-65658799999999746--36643699997------------2676--433568378888899
Q ss_pred HHHHCCCCCHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 764156322002335564156-4420489999999988765310266652688068730002665455311456555654
Q gi|254780371|r 184 YASTLPGVKISGVDMHIGSQI-DQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQ 262 (431)
Q Consensus 184 ~~~~~~~l~l~GlH~H~GS~~-~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~ 262 (431)
.++..+++.+.|+..|..+-- .+.....+.++....+ ... ....+.+..--++-..+ +..+|+-..+-.+--
T Consensus 143 ~~~~~~~~~~~gi~tH~a~ad~~~~~~~~~q~~~f~~~---~~~---~~~~~h~aNS~~~l~~~-~~~~d~vR~Gi~lYG 215 (357)
T 1rcq_A 143 RLRASGKVAKIVMMSHFSRADELDCPRTEEQLAAFSAA---SQG---LEGEISLRNSPAVLGWP-KVPSDWVRPGILLYG 215 (357)
T ss_dssp HHHHTTCEEEEEEECCCSSTTCTTCTHHHHHHHHHHHH---HTT---CCSCEECCCHHHHHHCT-TSCCSEECCCGGGGT
T ss_pred HHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH---HHH---CCCCCCCCCCHHHHCCC-CCCCCEECCCCCCCC
T ss_conf 98641454403456530335562036799999999998---751---13321146839885484-024862466720145
Q ss_pred HHCCCCCEEEEEECCEECCCCCEEEEEEEEECCCC---------------CCCCEEECCCCCCCCCCHHHCCCCCCCCCC
Q ss_conf 21024530344101112036632588876403468---------------974220055300011001110246532222
Q gi|254780371|r 263 YFGNLQCKIILEPGRFLVADVGILVTKVISIKKSA---------------DKTFVILDVAMNDFMRPTLYDAYHEINYIV 327 (431)
Q Consensus 263 ~~~~~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~---------------~~~~~~vD~g~~~~~~p~~~~~~~~i~~~~ 327 (431)
.. |.-...+-..-..++..+-++|+.+|+-. +.+.+++..|..+-+.-.+.+. ..++.
T Consensus 216 ~~----p~~~~~~~~~~lkpv~~l~a~i~~ik~l~~G~~vgYg~~~~a~~~~~ia~v~iGYaDG~~r~~~~~---~~v~i 288 (357)
T 1rcq_A 216 AT----PFERAHPLADRLRPVMTLESKVISVRDLPAGEPVGYGARYSTERRQRIGVVAMGYADGYPRHAADG---TLVFI 288 (357)
T ss_dssp CC----SSSSCCTTGGGCCCCEEEEEEEEEEEEECTTCEESGGGCEECSSSEEEEEESCCGGGTCCTTCCTT---CEEEE
T ss_pred CC----CCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCEECCCCEEEEEECCCCCCCCCCCCCCC---CEEEE
T ss_conf 67----874344544346512899866689898589998765432002576079986120015754104688---29999
Q ss_pred CCCCCCCEEEEEEEEEECCCCCEEEEEE-ECCCCCCCCEEEEECCC
Q ss_conf 3467776158999810005666656210-05668888899996797
Q gi|254780371|r 328 NPAGDRLHIHADIVGPICETGDFIALNR-KIALPRPGDLLYIEKTG 372 (431)
Q Consensus 328 ~~~~~~~~~~~~i~G~~C~~~D~l~~~~-~lp~l~~GD~l~i~~~G 372 (431)
..+.+-|.|..|+ |.+.-+. ..|+.++||.+.+.+-.
T Consensus 289 ------~G~~~pivGrisM--D~~~vdvt~~~~~~~Gd~v~l~G~~ 326 (357)
T 1rcq_A 289 ------DGKPGRLVGRVSM--DMLTVDLTDHPQAGLGSRVELWGPN 326 (357)
T ss_dssp ------TTEEEEBCSCCCS--SCEEEECTTCTTCCTTCEEEEESSS
T ss_pred ------CCEEEEEECEECC--CEEEEECCCCCCCCCCCEEEEECCC
T ss_conf ------9999378576340--4389988899778999999997899
No 33
>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A*
Probab=99.47 E-value=1.4e-11 Score=97.32 Aligned_cols=302 Identities=15% Similarity=0.150 Sum_probs=176.5
Q ss_pred CCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCC----CHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCEEEC
Q ss_conf 9789977999999999999861447978999641079----999999999739928986899986522125784312444
Q gi|254780371|r 27 TPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANS----NQAVIKTLAHLGSGLDIVSEGELRRALAAPVPAERIVFS 102 (431)
Q Consensus 27 TP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~----~~~il~~l~~~G~g~dv~S~~El~~al~~G~~~~~Ii~~ 102 (431)
+...++|++.|++|++.+++..+ +.+++--+|||- ...+.+.+.+.+ .|-|++..|....+++|+.. .|+.-
T Consensus 23 ~a~~~Idl~al~~N~~~ir~~~~--~~~i~aVVKAnAYGhG~~~va~~l~~~~-~faVa~~~EA~~LR~~gi~~-~ilil 98 (379)
T 2rjg_A 23 AATVVINRRALRHNLQRLRELAP--ASKMVAVVKANAYGHGLLETARTLPDAD-AFGVARLEEALRLRAGGITK-PVLLL 98 (379)
T ss_dssp CSEEEEEHHHHHHHHHHHHHHST--TSEEEEECHHHHHTTCHHHHHHHCTTCS-EEEESSHHHHHHHHHTTCCS-CEEET
T ss_pred CEEEEECHHHHHHHHHHHHHHCC--CCEEEEEEEECCCCCCHHHHHHHHHCCC-EEEEEEHHHHHHHHHHCCCC-CEECC
T ss_conf 65999959999999999996689--9869999964526387899999996099-89993999999999748998-62103
Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 77542012444420687233332202467687741133442158998723778674433322334445688711113457
Q gi|254780371|r 103 GVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLY 182 (431)
Q Consensus 103 g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~ 182 (431)
++..+.+++..+.++++ ..++.|+++++.+.+. ..+++.+|-|.+ +||. +|+|+.++|+.+++
T Consensus 99 ~~~~~~~~~~~~~~~~i-~~~i~s~~~l~~~~~~--~~~~~~~vhlki------------DTGM--~RlG~~~~e~~~~~ 161 (379)
T 2rjg_A 99 EGFFDARDLPTISAQHF-HTAVHNEEQLAALEEA--SLDEPVTVWMKL------------DTGM--HRLGVRPEQAEAFY 161 (379)
T ss_dssp TCCSCGGGHHHHHHTTE-EEEECSHHHHHHHHHC--CCSSCBCEEEEB------------CSSC--CSSSBCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHCCC-CCCCCCHHHHHHHHHH--HCCCCEEEEEEE------------CCCC--CCCCCCHHHHHHHH
T ss_conf 46899899999997066-6356979999999987--348981799998------------1788--88897805678889
Q ss_pred HHHHHCC-CCCHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCC-CCCCCCCCCHHHHHHH
Q ss_conf 7764156-322002335564156-442048999999998876531026665268806873000-2665455311456555
Q gi|254780371|r 183 AYASTLP-GVKISGVDMHIGSQI-DQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIA-YHSDHRPPSSSDYASL 259 (431)
Q Consensus 183 ~~~~~~~-~l~l~GlH~H~GS~~-~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~-y~~~~~~~~~~~~~~~ 259 (431)
+.....+ ++.+.|+..|..+-- .+.....+-++...++. +........-|=+|=+-.| ++.+...+.+.-|+-.
T Consensus 162 ~~~~~~~~~l~~~Gi~THfa~ad~~d~~~~~~Q~~~F~~~~---~~~~~~~h~anS~a~l~~~~~~~d~vR~Gi~lYG~~ 238 (379)
T 2rjg_A 162 HRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFC---EGKPGQRSIAASGGILLWPQSHFDWVRPGIILYGVS 238 (379)
T ss_dssp HHHTTCSSBCSSCEEECCCSSTTCTTSTHHHHHHHHHHHHH---TTCCSCEECCCHHHHHHCGGGCSSEECCCGGGGTCC
T ss_pred HHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHH---HHCCCCHHCCCCHHHHCCCCCCCCCCCCCCCEECCC
T ss_conf 99987404441035882557765445199999999999997---522320100178777578723476546786156366
Q ss_pred HHHHHCCCCCEEEEE-ECCEECCCCCEEEEEEEEECCCC---------------CCCCEEECCCCCCCCCCHHHCCCCCC
Q ss_conf 654210245303441-01112036632588876403468---------------97422005530001100111024653
Q gi|254780371|r 260 IHQYFGNLQCKIILE-PGRFLVADVGILVTKVISIKKSA---------------DKTFVILDVAMNDFMRPTLYDAYHEI 323 (431)
Q Consensus 260 i~~~~~~~~~~l~~E-PGR~lva~ag~ll~~V~~vK~~~---------------~~~~~~vD~g~~~~~~p~~~~~~~~i 323 (431)
+.-..+ +...=..++..+-++|..+|+-. +.+.+++..|..+-+.-.+.+. .
T Consensus 239 ---------p~~~~~~~~~~~Lkpv~sl~a~i~~v~~l~~G~~VgYg~~~~a~~~~~ia~ipiGYaDG~~R~~~~~---~ 306 (379)
T 2rjg_A 239 ---------PLEDRSTGADFGCQPVMSLTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAAPSG---T 306 (379)
T ss_dssp ---------SSSSSCCGGGGTCCCCEEEEEEEEEEEEECTTCEESGGGCEECSSCEEEEEESCCTTTTCCTTCCTT---C
T ss_pred ---------CCCCCCCCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCEEECCCCEEEEEECCEECCCCCCCCCCC---C
T ss_conf ---------5434454334576312786898236799679985567761552698399997444116725556799---5
Q ss_pred CCCCCCCCCCCEEEEEEEEEECCCCCEEEEEE-ECCCCCCCCEEEEECCC
Q ss_conf 22223467776158999810005666656210-05668888899996797
Q gi|254780371|r 324 NYIVNPAGDRLHIHADIVGPICETGDFIALNR-KIALPRPGDLLYIEKTG 372 (431)
Q Consensus 324 ~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~-~lp~l~~GD~l~i~~~G 372 (431)
.++. ..+.+-|.|..|+ |.+.-+. ..|..++||.+.+.+-+
T Consensus 307 ~V~i------~G~~~pivGrv~M--D~~~vDlt~~~~~~~GD~V~L~G~~ 348 (379)
T 2rjg_A 307 PVLV------NGREVPIVGRVAM--DMICVDLGPQAQDKAGDPVILWGEG 348 (379)
T ss_dssp EEEE------TTEEEEBCSCCCS--SCEEEECCTTCCCCTTCEEEEEBTT
T ss_pred EEEE------CCEEEEEEEEECC--CEEEEECCCCCCCCCCCEEEEECCC
T ss_conf 8999------9999157779725--4289988898889999999997899
No 34
>1w8g_A YGGS, hypothetical UPF0001 protein YGGS; structural genomics, hypothetical protein, putative enzyme with PLP-binding domain; HET: PLP ICT; 2.0A {Escherichia coli}
Probab=98.88 E-value=1.7e-07 Score=69.55 Aligned_cols=189 Identities=13% Similarity=0.130 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHCCC--CCCEEEEEEECCCCHHHHHHHHHCCCC-EEEECHHHHHH---HHHC-CCCCCCEEECCCCCC
Q ss_conf 9999999999986144--797899964107999999999973992-89868999865---2212-578431244477542
Q gi|254780371|r 35 TAIEKNYLTFSNAFDG--MDTMVCYALKANSNQAVIKTLAHLGSG-LDIVSEGELRR---ALAA-PVPAERIVFSGVGKT 107 (431)
Q Consensus 35 ~~i~~n~~~l~~a~~~--~~~~i~yAvKaN~~~~il~~l~~~G~g-~dv~S~~El~~---al~~-G~~~~~Ii~~g~~k~ 107 (431)
..|+++++.......+ .++++.-..|+.|...| +.+.+.|.. |-=.=..|+.. .+.. +.+.-+-.|-|+--+
T Consensus 9 ~~I~~~I~~a~~~~gR~~~~V~LiaVsK~~~~e~I-~~a~~~G~r~fGENrvQE~~~K~~~l~~~~~~~i~WHfIG~LQs 87 (234)
T 1w8g_A 9 AQVRDKISAAATRCGRSPEEITLLAVSKTKPASAI-AEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQS 87 (234)
T ss_dssp HHHHHHHHHHHHHTTCCGGGCEEEEECTTSCHHHH-HHHHHTTCCEEEESSHHHHHHHHHHHHHTTCCSCEEEECSCCCG
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHH-HHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCH
T ss_conf 99999999999980999687699999899899999-99998699714687418999999998751588806998257410
Q ss_pred CHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 01244442068723333220246768774113344215899872377867443332233444568871111345777641
Q gi|254780371|r 108 IDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYAST 187 (431)
Q Consensus 108 ~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~~~ 187 (431)
.. +..++.+--.+=+|||+.-++.|...+.+.+++.+|+|-||. ++..+|.|+.++++.++++.+..
T Consensus 88 NK-vk~iv~~~~~IhSVDs~kla~~l~~~~~~~~~~~~vliQVNi------------s~E~~K~G~~p~e~~~~~~~~~~ 154 (234)
T 1w8g_A 88 NK-SRLVAEHFDWCHTIDRLRIATRLNDQRPAELPPLNVLIQINI------------SDENSKSGIQLAELDELAAAVAE 154 (234)
T ss_dssp GG-HHHHHHHCSEEEEECSHHHHHHHHHHSCTTSCCEEEEEEECC------------SCTTCCCSBCGGGHHHHHHHHHT
T ss_pred HH-HHHHCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC------------CCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 12-766133211010310277999998543542687518999813------------77656678527779999999986
Q ss_pred CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECC
Q ss_conf 563220023355641564420489999999988765310266652688068
Q gi|254780371|r 188 LPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGG 238 (431)
Q Consensus 188 ~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGG 238 (431)
+++|++.||-+ +++...|.......++.+.+++..++..+..+..|.||=
T Consensus 155 ~~~l~~~GLMt-i~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~LSMGM 204 (234)
T 1w8g_A 155 LPRLRLRGLMA-IPAPESEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGM 204 (234)
T ss_dssp CTTEEEEEEEE-CCCCCCCHHHHHHHHHHHHHHHHHHHHHSTTCCEEECCC
T ss_pred CCCCCEEEEEE-ECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCC
T ss_conf 79975678864-379840278999999999999999873279989667720
No 35
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703}
Probab=98.78 E-value=5.9e-07 Score=65.84 Aligned_cols=189 Identities=17% Similarity=0.184 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHCCC--CCCEEEEEEECCCCHHHHHHHHHCCC-CEEEECHHHHHH---HHH-----CC----------
Q ss_conf 9999999999986144--79789996410799999999997399-289868999865---221-----25----------
Q gi|254780371|r 35 TAIEKNYLTFSNAFDG--MDTMVCYALKANSNQAVIKTLAHLGS-GLDIVSEGELRR---ALA-----AP---------- 93 (431)
Q Consensus 35 ~~i~~n~~~l~~a~~~--~~~~i~yAvKaN~~~~il~~l~~~G~-g~dv~S~~El~~---al~-----~G---------- 93 (431)
+.++++++.-.+...+ ..+++.-..|+.|...| +.+.+.|. .|-=.=..|+.. .+. .+
T Consensus 30 ~~V~~rI~~A~~~agR~p~~V~LiAVSK~~p~e~I-~~a~~~G~r~FGENrvQE~~~K~~~l~~~~~~~~~~~~~~~~~~ 108 (282)
T 3cpg_A 30 HRVLDRIAAAEEQAGREAGSVRLLAATKTRDIGEI-MAAIDAGVRMIGENRPQEVTAKAEGLARRCAERGFSLGVAGAAP 108 (282)
T ss_dssp HHHHHHHHHHHHHTTCCTTSSEEEEECTTCCHHHH-HHHHHTTCCCEEESCHHHHHHHHHHHHHHHHHTTEEECCC----
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHH-HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 99999999999982989366599999899899999-99998699703687089999999998764100012222223444
Q ss_pred -CCCC--CEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf -7843--1244477542012444420687233332202467687741133442158998723778674433322334445
Q gi|254780371|r 94 -VPAE--RIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDK 170 (431)
Q Consensus 94 -~~~~--~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sK 170 (431)
.... +-.|-|+--+. -++.++.+--.+=+|||+..++.|...+.+.++..+|+|-||. ++..+|
T Consensus 109 ~~~~~~I~WHfIG~LQsN-Kvk~iv~~~~~IhSVDs~kla~~l~~~a~~~~~~~~vlIQVNi------------s~E~sK 175 (282)
T 3cpg_A 109 DAAAEHIPFHLIGQLQSN-KIGKVLPVVDTIESVDSIDLAEKISRRAVARGITVGVLLEVNE------------SGEESK 175 (282)
T ss_dssp --CCEEECEEECSCCCGG-GHHHHTTTCSEEEEECCHHHHHHHHHHHHHHTCCEEEEEEBCC------------SSCTTS
T ss_pred CCCCCCEEEEEECCCCHH-HHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEEECC------------CCCCCC
T ss_conf 456777269994464200-0777651064665425643058899887624766169999625------------877566
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC----CCCCEEEECC
Q ss_conf 6887111134577764156322002335564156442048999999998876531026----6652688068
Q gi|254780371|r 171 FGIPIHQIHSLYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNG----HNIQHIDVGG 238 (431)
Q Consensus 171 FGi~~~~~~~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g----~~~~~ldiGG 238 (431)
.|++++++.++++.+..+++|++.||-+ +++...+++.....+..+.++.+.+...+ ..++.|.+|=
T Consensus 176 ~G~~p~e~~~l~~~i~~~~~l~l~GLMt-i~p~~~d~~~~r~~F~~l~~l~d~l~~~~~~~~~~~~~LSMGM 246 (282)
T 3cpg_A 176 SGCDPAHAIRIAQKIGTLDGIELQGLMT-IGAHVHDETVIRRGFSHLRKTRDLILASGEPGTDRCRELSMGM 246 (282)
T ss_dssp SSBCGGGHHHHHHHHHTCTTEEEEEEEC-CCCCSSCHHHHHHHHHHHHHHHHHHHHHCCTTCTTCCEEECCC
T ss_pred CCCCHHHHHHHHHHHHHHCCHHCCEEEE-ECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECHH
T ss_conf 8878777999999986510010221786-3688888778999999999999999985688779989881700
No 36
>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, MAD, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A*
Probab=97.81 E-value=0.0017 Score=42.41 Aligned_cols=187 Identities=14% Similarity=0.156 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHCC--C--CCCEEEEEEECCCCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCC-CCCEEECCCCCCC
Q ss_conf 999999999998614--4--79789996410799999999997399-2898689998652212578-4312444775420
Q gi|254780371|r 35 TAIEKNYLTFSNAFD--G--MDTMVCYALKANSNQAVIKTLAHLGS-GLDIVSEGELRRALAAPVP-AERIVFSGVGKTI 108 (431)
Q Consensus 35 ~~i~~n~~~l~~a~~--~--~~~~i~yAvKaN~~~~il~~l~~~G~-g~dv~S~~El~~al~~G~~-~~~Ii~~g~~k~~ 108 (431)
+.|+++++...+... + ..+++.-..|+.|...|. .+.+.|. .|-=.=..|+..-.. .++ .=+-.|-|+--+.
T Consensus 19 ~~i~~~I~~a~~~~~~~r~~~~V~LiaVSK~~~~~~I~-~~~~~G~~~fGENrvQE~~~K~~-~l~~~i~WHfIG~LQsN 96 (256)
T 1ct5_A 19 ESVREVVNAEAKNVHVNENASKILLLVVSKLKPASDIQ-ILYDHGVREFGENYVQELIEKAK-LLPDDIKWHFIGGLQTN 96 (256)
T ss_dssp HHHHHHHHHHHHTC-------CCEEEEECTTSCHHHHH-HHHHHTCCEEEECCHHHHHHHHH-HSCTTCEEEECSCCCGG
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHH-HHHHCCCCCCCCCHHHHHHHHHH-HHCCCEEEEEECCCCHH
T ss_conf 99999999998873269996866999998998999999-99986996246865999999866-40353468996653211
Q ss_pred HHHHHHHHCC-CC-CCCCCCCHHHHHHHHHHCCCCC---CEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC-CCHHHH
Q ss_conf 1244442068-72-3333220246768774113344---2158998723778674433322334445688711-113457
Q gi|254780371|r 109 DEIDLALQSG-IY-CFNVESESELKTLNQRAVSLGK---KAPIAFRVNPDINANTHKKISTGKKEDKFGIPIH-QIHSLY 182 (431)
Q Consensus 109 ~~l~~ai~~g-v~-~i~vDs~~el~~l~~~a~~~~~---~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~-~~~~~~ 182 (431)
-++.+++.- +. +-++|++..+++|.+.+.+.++ +..|+|.||. ++..+|.|++++ ++.+++
T Consensus 97 -Kvk~i~~~~~~~~I~svds~~la~~l~~~~~~~~~~~~~~~vlIQVNi------------~~e~sK~G~~~~~~l~~~~ 163 (256)
T 1ct5_A 97 -KCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINT------------SHEDQKSGLNNEAEIFEVI 163 (256)
T ss_dssp -GHHHHHHCTTEEEEEEECSHHHHHHHHHHHHHHCTTSCCEEEEEEBCC------------SSSCCSSSBCCHHHHHHHH
T ss_pred -HHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEC------------CCCCCCCCCCCHHHHHHHH
T ss_conf -699999743677023254788899999988875214576148886402------------5555788889678999999
Q ss_pred HHH--HHCCCCCHHHHHHHHHHCCCCCHH--HHHHHHHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 776--415632200233556415644204--8999999998876531026665268806
Q gi|254780371|r 183 AYA--STLPGVKISGVDMHIGSQIDQIES--FHKAFKLLRDLTQQLRSNGHNIQHIDVG 237 (431)
Q Consensus 183 ~~~--~~~~~l~l~GlH~H~GS~~~~~~~--~~~~~~~~~~~~~~l~~~g~~~~~ldiG 237 (431)
..+ ..+++|++.||.+ +|....+++. -...+..+.++.+++.........|.||
T Consensus 164 ~~~~~~~~~~l~l~GLM~-igp~~~~~~~~~~~~~F~~l~~l~~~l~~~~~~~~~LSMG 221 (256)
T 1ct5_A 164 DFFLSEECKYIKLNGLMT-IGSWNVSHEDSKENRDFATLVEWKKKIDAKFGTSLKLSMG 221 (256)
T ss_dssp HHHHSTTCCSEEEEEEEC-CCCCC---------HHHHHHHHHHHHHHHHHCCCCEEECC
T ss_pred HHHHHHHCCHHHCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCH
T ss_conf 999998621132048634-4677888212578999999999999971716997987173
No 37
>3ju2_A Uncharacterized protein SMC04130; structural genomics, PSI-2, TIM barrel protein, protein structure initiative, Zn binding domain; 1.80A {Sinorhizobium meliloti}
Probab=89.97 E-value=0.26 Score=27.47 Aligned_cols=108 Identities=15% Similarity=0.018 Sum_probs=62.4
Q ss_pred CHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHH
Q ss_conf 13457776415632200233556415644204899999999887653102666526880687300026654553114565
Q gi|254780371|r 178 IHSLYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYA 257 (431)
Q Consensus 178 ~~~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~ 257 (431)
..++.+.+++. |+++.+++.+......+.+.+...++.+..+++..++.|.+.-.+-.|+-.+ . .......++.++
T Consensus 48 ~~e~~~~l~~~-gl~v~~~~~~~~~~~~d~~~~~~~i~~~~~~i~~a~~lG~~~i~~~~g~~~~--~-~~~~~~~~~~~~ 123 (284)
T 3ju2_A 48 LGEAGRIVRAN-GLKLTGLCRGGFFPAPDASGREKAIDDNRRAVDEAAELGADCLVLVAGGLPG--G-SKNIDAARRMVV 123 (284)
T ss_dssp HHHHHHHHHHT-TCEESCEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTBSCEEEECBCCCT--T-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCC--C-CCCHHHHHHHHH
T ss_conf 99999999983-9959998767666889989999999999999999999499836956798667--8-899999999999
Q ss_pred HHH---HHHHCCCCCEEEEEECCEECCCCCEEEEE
Q ss_conf 556---54210245303441011120366325888
Q gi|254780371|r 258 SLI---HQYFGNLQCKIILEPGRFLVADVGILVTK 289 (431)
Q Consensus 258 ~~i---~~~~~~~~~~l~~EPGR~lva~ag~ll~~ 289 (431)
+.+ .+..++.+.++.+||--......+..+.+
T Consensus 124 ~~l~~l~~~A~~~gv~l~~E~~~~~~~~~~~~~~~ 158 (284)
T 3ju2_A 124 EGIAAVLPHARAAGVPLAIEPLHPMYAADRACVNT 158 (284)
T ss_dssp HHHHHHHHHHHHHTCCEEECCCCGGGTTTTBSCCC
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC
T ss_conf 99999999987436258986147644442210155
No 38
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=89.09 E-value=0.45 Score=25.88 Aligned_cols=94 Identities=10% Similarity=0.039 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHH
Q ss_conf 11345777641563220023355641564420489999999988765310266652688068730002665455311456
Q gi|254780371|r 177 QIHSLYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDY 256 (431)
Q Consensus 177 ~~~~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~ 256 (431)
++.++.+.++++ |+++.++|....-...+.+...+.++.+...++..+..| .++|-+..|..-+. ......++.+
T Consensus 47 ~~~~l~~~~~~~-gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG--~~~i~~~~~~~~~~--~~~~~~~~~~ 121 (278)
T 1i60_A 47 SLDDLAEYFQTH-HIKPLALNALVFFNNRDEKGHNEIITEFKGMMETCKTLG--VKYVVAVPLVTEQK--IVKEEIKKSS 121 (278)
T ss_dssp CHHHHHHHHHTS-SCEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHHHT--CCEEEEECCBCSSC--CCHHHHHHHH
T ss_pred CHHHHHHHHHHC-CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--CCCEEECCCCCCCC--CCHHHHHHHH
T ss_conf 399999999980-993999836767789998999999999999999999839--99604588988777--8989999999
Q ss_pred H---HHHHHHHCCCCCEEEEEE
Q ss_conf 5---556542102453034410
Q gi|254780371|r 257 A---SLIHQYFGNLQCKIILEP 275 (431)
Q Consensus 257 ~---~~i~~~~~~~~~~l~~EP 275 (431)
. +.+.+..++.++++.+||
T Consensus 122 ~~~l~~l~~~a~~~gv~l~iE~ 143 (278)
T 1i60_A 122 VDVLTELSDIAEPYGVKIALEF 143 (278)
T ss_dssp HHHHHHHHHHHGGGTCEEEEEC
T ss_pred HHHHHHHHHHHHHHCCCEEEEE
T ss_conf 9999999999986198448984
No 39
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif, structural genomics; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=84.61 E-value=1.6 Score=22.21 Aligned_cols=102 Identities=12% Similarity=0.099 Sum_probs=53.1
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCHHHHHHHH--HH--CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCC
Q ss_conf 5688711113457776415632200233556--41--5644204899999999887653102666526880687300026
Q gi|254780371|r 170 KFGIPIHQIHSLYAYASTLPGVKISGVDMHI--GS--QIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYH 245 (431)
Q Consensus 170 KFGi~~~~~~~~~~~~~~~~~l~l~GlH~H~--GS--~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~ 245 (431)
++..+.++..++.+.++++ ++.+.++++.. .- ...|.+...+.++.+...++.....| .+.+.+.+|...+
T Consensus 60 ~~~~~~~~~~~l~~~~~~~-gl~i~~~~~~~~~~~~l~s~d~~~r~~~~~~l~~~i~~a~~lG--~~~i~~~~~~~~~-- 134 (295)
T 3cqj_A 60 RLDWSREQRLALVNAIVET-GVRVPSMCLSAHRRFPLGSEDDAVRAQGLEIMRKAIQFAQDVG--IRVIQLAGYDVYY-- 134 (295)
T ss_dssp GGGCCHHHHHHHHHHHHHH-CCEEEEEEEGGGGTSCTTCSSHHHHHHHHHHHHHHHHHHHHHT--CCEEEECCCSCSS--
T ss_pred CCCCCHHHHHHHHHHHHHC-CCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--CCEEEECCCCCCC--
T ss_conf 4679999999999999982-9946897525344799999699999999999999999999729--9889977888876--
Q ss_pred CCCCCCCHHHHHH---HHHHHHCCCCCEEEEEEC
Q ss_conf 6545531145655---565421024530344101
Q gi|254780371|r 246 SDHRPPSSSDYAS---LIHQYFGNLQCKIILEPG 276 (431)
Q Consensus 246 ~~~~~~~~~~~~~---~i~~~~~~~~~~l~~EPG 276 (431)
.......++.+.+ .+.+..++.++++.+||-
T Consensus 135 ~~~~~~~~~~~~~~l~~l~~~A~~~gi~lalE~~ 168 (295)
T 3cqj_A 135 QEANNETRRRFRDGLKESVEMASRAQVTLAMEIM 168 (295)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_conf 7784999999999999999998753748888630
No 40
>2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413}
Probab=83.82 E-value=1.5 Score=22.28 Aligned_cols=53 Identities=15% Similarity=0.237 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHCCCCCHHHHHHHHHHCC------CCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 11134577764156322002335564156------4420489999999988765310266
Q gi|254780371|r 176 HQIHSLYAYASTLPGVKISGVDMHIGSQI------DQIESFHKAFKLLRDLTQQLRSNGH 229 (431)
Q Consensus 176 ~~~~~~~~~~~~~~~l~l~GlH~H~GS~~------~~~~~~~~~~~~~~~~~~~l~~~g~ 229 (431)
++..++.+.++++ ||.+.+++++.+... .|++...++++.+...++...+.|.
T Consensus 65 ~~~~~lk~~l~~~-GL~v~~~~~~~~~~~~~~~~s~d~~~R~~~i~~~k~~i~~A~~lGa 123 (335)
T 2qw5_A 65 ENYTNLRHYLDSE-GLENVKISTNVGATRTFDPSSNYPEQRQEALEYLKSRVDITAALGG 123 (335)
T ss_dssp HHHHHHHHHHHHT-TCTTCEEEEECCCCSSSCTTCSSHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHC-CCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 8899999999985-9958999605777656688899999999999999999999998378
No 41
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicusatcc 33223} PDB: 3krz_A*
Probab=83.67 E-value=2.2 Score=21.22 Aligned_cols=17 Identities=12% Similarity=0.368 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHC
Q ss_conf 89999999988765310
Q gi|254780371|r 210 FHKAFKLLRDLTQQLRS 226 (431)
Q Consensus 210 ~~~~~~~~~~~~~~l~~ 226 (431)
+..-++.++++.+.+++
T Consensus 189 ~enR~Rf~~Eii~air~ 205 (343)
T 3kru_A 189 IENRARFLIEVIDEVRK 205 (343)
T ss_dssp HHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 66735889999999976
No 42
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} PDB: 3hf3_A*
Probab=83.63 E-value=1.3 Score=22.69 Aligned_cols=14 Identities=14% Similarity=0.342 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999998876531
Q gi|254780371|r 212 KAFKLLRDLTQQLR 225 (431)
Q Consensus 212 ~~~~~~~~~~~~l~ 225 (431)
.-.+.+.++.+.++
T Consensus 200 nR~Rf~~Eii~aIr 213 (349)
T 3hgj_A 200 NRMRFPLQVAQAVR 213 (349)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 88899999999999
No 43
>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*
Probab=81.97 E-value=2.3 Score=21.07 Aligned_cols=15 Identities=13% Similarity=0.324 Sum_probs=7.9
Q ss_pred HHHHCCCCCEEEEEE
Q ss_conf 542102453034410
Q gi|254780371|r 261 HQYFGNLQCKIILEP 275 (431)
Q Consensus 261 ~~~~~~~~~~l~~EP 275 (431)
.+..++.++++.+||
T Consensus 157 ~~~A~~~Gv~l~iE~ 171 (309)
T 2hk0_A 157 ADFANDLGINLCIEV 171 (309)
T ss_dssp HHHHHHTTCEEEEEC
T ss_pred HHHHHHHCCCEEEEE
T ss_conf 999986176447884
No 44
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*
Probab=80.04 E-value=2.9 Score=20.36 Aligned_cols=39 Identities=23% Similarity=0.335 Sum_probs=21.4
Q ss_pred CCEEEECHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHCCCCC
Q ss_conf 9289868999865221257843124447754201244442068723
Q gi|254780371|r 76 SGLDIVSEGELRRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYC 121 (431)
Q Consensus 76 ~g~dv~S~~El~~al~~G~~~~~Ii~~g~~k~~~~l~~ai~~gv~~ 121 (431)
-|+|+++..|++. .|. ..++..+...+.++...++|+..
T Consensus 26 ~G~d~s~~~~~e~---~g~----~~~d~~g~~~d~~~~lk~~G~N~ 64 (399)
T 1ur4_A 26 KGVDVSSIIALEE---SGV----AFYNESGKKQDIFKTLKEAGVNY 64 (399)
T ss_dssp EEEECTTHHHHHH---TTC----CCBCTTSCBCCHHHHHHHTTCCE
T ss_pred EEEEHHHHHHHHH---CCC----EEECCCCCCCCHHHHHHHCCCCE
T ss_conf 7765776899998---698----48999998667999999759987
No 45
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=78.11 E-value=3.2 Score=20.05 Aligned_cols=13 Identities=15% Similarity=-0.046 Sum_probs=6.3
Q ss_pred HHCCCCCEEEEEE
Q ss_conf 2102453034410
Q gi|254780371|r 263 YFGNLQCKIILEP 275 (431)
Q Consensus 263 ~~~~~~~~l~~EP 275 (431)
..++.++++.+||
T Consensus 141 ~A~~~gi~l~iE~ 153 (290)
T 2qul_A 141 VAEDYGIIYALEV 153 (290)
T ss_dssp HHHHHTCEEEEEC
T ss_pred HHHHHCCEEEEEE
T ss_conf 9985152146563
No 46
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structural genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=76.30 E-value=3 Score=20.29 Aligned_cols=12 Identities=25% Similarity=0.490 Sum_probs=5.1
Q ss_pred HCCCCCEEEEEE
Q ss_conf 102453034410
Q gi|254780371|r 264 FGNLQCKIILEP 275 (431)
Q Consensus 264 ~~~~~~~l~~EP 275 (431)
.++.+.++.+||
T Consensus 132 a~~~Gv~l~lE~ 143 (286)
T 3dx5_A 132 FAQHNMYVLLET 143 (286)
T ss_dssp HHHTTCEEEEEC
T ss_pred HHCCCCEEEEEE
T ss_conf 761496899984
No 47
>1xim_A D-xylose isomerase; isomerase(intramolecular oxidoreductse); HET: XYL; 2.20A {Actinoplanes missouriensis} SCOP: c.1.15.3 PDB: 4xim_A 5xim_A* 6xim_A* 7xim_A 8xim_A* 9xim_A* 3xin_A 2xim_A* 5xin_A* 1xin_A* 1bhw_A* 2xin_A* 3xim_A*
Probab=76.09 E-value=3.8 Score=19.60 Aligned_cols=125 Identities=14% Similarity=0.116 Sum_probs=65.3
Q ss_pred EECCCCHHHHHHHCCCCEEEEE----------HHHHHHHHHHHHHHCCCCCCEEEE------EE-------ECCCCHHHH
Q ss_conf 9878429999997499789977----------999999999999861447978999------64-------107999999
Q gi|254780371|r 12 HAENVSLEKLAHVVQTPFYCYS----------TTAIEKNYLTFSNAFDGMDTMVCY------AL-------KANSNQAVI 68 (431)
Q Consensus 12 ~i~~~~l~~La~~~gTP~yV~d----------~~~i~~n~~~l~~a~~~~~~~i~y------Av-------KaN~~~~il 68 (431)
+.+.++.-+..++.|.|.+.++ .....++++++++++...+.++.. +- =|||++.|-
T Consensus 32 ~~~~~e~~~~l~~lG~~~~~fHd~dl~P~~~~~~~~~~~~~~~k~~l~~~Gl~~~~~t~nlf~~p~f~~Ga~TnPD~~vR 111 (393)
T 1xim_A 32 ALDPVEAVHKLAEIGAYGITFHDDDLVPFGSDAQTRDGIIAGFKKALDETGLIVPMVTTNLFTHPVFKDGGFTSNDRSVR 111 (393)
T ss_dssp CCCHHHHHHHHHHHTCSEEECBHHHHSCTTCCHHHHHHHHHHHHHHHHHHTCBCCEEECCCSSSGGGTTCSTTCSSHHHH
T ss_pred CCCHHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 55799999999982998683366777888998688999999999999963984102056435681201688789699999
Q ss_pred HHHHHCCCCEEEECHHHHHHHHHCCCCCCCEEE-CCCCC----CCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 999973992898689998652212578431244-47754----2012444420687233332202467687741133442
Q gi|254780371|r 69 KTLAHLGSGLDIVSEGELRRALAAPVPAERIVF-SGVGK----TIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKK 143 (431)
Q Consensus 69 ~~l~~~G~g~dv~S~~El~~al~~G~~~~~Ii~-~g~~k----~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~ 143 (431)
+...+.- ..=+.+|...|-+ .+++ .|..- ...+++.+.+. .+++ ++.+.+.+.+.+..
T Consensus 112 ~~Ai~~~-------k~aIDiaa~LGa~--~~v~W~G~dG~~y~~~~d~~~~~d~-----~~e~---l~~v~~ya~~~g~g 174 (393)
T 1xim_A 112 RYAIRKV-------LRQMDLGAELGAK--TLVLWGGREGAEYDSAKDVSAALDR-----YREA---LNLLAQYSEDRGYG 174 (393)
T ss_dssp HHHHHHH-------HHHHHHHHHHTCC--EEEEECTTSEESSGGGCCHHHHHHH-----HHHH---HHHHHHHHHHHTCC
T ss_pred HHHHHHH-------HHHHHHHHHHCCC--EEEECCCCCCCCCCCCCCHHHHHHH-----HHHH---HHHHHHHHHHCCCC
T ss_conf 9999999-------9999999996899--6998379886678865699999999-----9999---99999999860898
Q ss_pred EEEEEEEECC
Q ss_conf 1589987237
Q gi|254780371|r 144 APIAFRVNPD 153 (431)
Q Consensus 144 ~~I~lRinp~ 153 (431)
++++|--+|.
T Consensus 175 v~~~IEpKP~ 184 (393)
T 1xim_A 175 LRFAIEPKPN 184 (393)
T ss_dssp CEEEEECCSS
T ss_pred CEEEEECCCC
T ss_conf 0699723788
No 48
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=72.14 E-value=4.7 Score=18.96 Aligned_cols=71 Identities=13% Similarity=0.194 Sum_probs=48.6
Q ss_pred CCCCEEEC-CEEEECCCCHHHHHH---HCCCCEEEEEHHHHHHH--HHHHHHHCCCCCCEEEEEEECCCCHHHHHHH
Q ss_conf 98716668-858987842999999---74997899779999999--9999986144797899964107999999999
Q gi|254780371|r 1 MSAFKYFE-GSLHAENVSLEKLAH---VVQTPFYCYSTTAIEKN--YLTFSNAFDGMDTMVCYALKANSNQAVIKTL 71 (431)
Q Consensus 1 m~~~~~~~-~~l~i~~~~l~~La~---~~gTP~yV~d~~~i~~n--~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l 71 (431)
|++|.|.. .+..++.-.+.+|.+ ..+.++.|.+...+++. ++++.+.+.+.++.+|.-++.||....+...
T Consensus 22 M~~f~f~~P~~I~fG~gal~~l~~~~~~~~r~llV~~~~~~~~~g~~~~v~~~L~g~~v~~f~~v~~~P~~~~v~~~ 98 (408)
T 1oj7_A 22 LNNFNLHTPTRILFGKGAIAGLREQIPHDARVLITYGGGSVKKTGVLDQVLDALKGMDVLEFGGIEPNPAYETLMNA 98 (408)
T ss_dssp CCCEEEEEEEEEEESTTGGGGHHHHSCTTCEEEEEECSSHHHHHSHHHHHHHHTTTSEEEEECCCCSSCBHHHHHHH
T ss_pred CCCCEECCCCEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH
T ss_conf 78867318985898849999999998679968999895278775399999998279917998082379899999999
No 49
>3kws_A Putative sugar isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=71.43 E-value=4.9 Score=18.85 Aligned_cols=96 Identities=8% Similarity=0.105 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHCCCCCHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCC-CCCCCH
Q ss_conf 1134577764156322002335564156--4420489999999988765310266652688068730002665-455311
Q gi|254780371|r 177 QIHSLYAYASTLPGVKISGVDMHIGSQI--DQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSD-HRPPSS 253 (431)
Q Consensus 177 ~~~~~~~~~~~~~~l~l~GlH~H~GS~~--~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~-~~~~~~ 253 (431)
.+.++.+.++++ ||++..+|.+..... .|++...++++.+...++..++.| .+.+-+.+|+.-..... .....+
T Consensus 65 ~~~~~k~~l~~~-gl~v~s~~~~~~~~l~~~d~~~R~~~ie~~k~~i~~a~~lG--a~~v~~~~~~~~~~~~~~~~~e~~ 141 (287)
T 3kws_A 65 RVNEIKQALNGR-NIKVSAICAGFKGFILSTDPAIRKECMDTMKEIIAAAGELG--STGVIIVPAFNGQVPALPHTMETR 141 (287)
T ss_dssp GHHHHHHHHTTS-SCEECEEECCCCSCTTBSSHHHHHHHHHHHHHHHHHHHHTT--CSEEEECSCCTTCCSBCCSSHHHH
T ss_pred HHHHHHHHHHHH-CCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC--CCCEEECCCCCCCCCCCCCHHHHH
T ss_conf 599999999983-99799992588766789699999999999999999999959--980342456677788888889999
Q ss_pred HHHHHH---HHHHHCCCCCEEEEEE
Q ss_conf 456555---6542102453034410
Q gi|254780371|r 254 SDYASL---IHQYFGNLQCKIILEP 275 (431)
Q Consensus 254 ~~~~~~---i~~~~~~~~~~l~~EP 275 (431)
+.+++. +.+..+..++++.+||
T Consensus 142 ~~~~~~l~~l~~~A~~~Gv~l~~E~ 166 (287)
T 3kws_A 142 DFLCEQFNEMGTFAAQHGTSVIFEP 166 (287)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEECC
T ss_pred HHHHHHHHHHHHHHHHHCCEEEEEE
T ss_conf 9999999999999996298799996
No 50
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=70.75 E-value=2.5 Score=20.84 Aligned_cols=85 Identities=13% Similarity=0.032 Sum_probs=44.3
Q ss_pred HHHHHCCCCCCCEEECCCCCCCHHHHHH-----------HHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCC
Q ss_conf 6522125784312444775420124444-----------20687233332202467687741133442158998723778
Q gi|254780371|r 87 RRALAAPVPAERIVFSGVGKTIDEIDLA-----------LQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDIN 155 (431)
Q Consensus 87 ~~al~~G~~~~~Ii~~g~~k~~~~l~~a-----------i~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~ 155 (431)
++|.++|||+=.|....-..-.+.|.-. +++..+ |. ++-+.++.+..+....|++|+++.=
T Consensus 148 ~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGs~enR~R-f~------~eii~~ir~~~g~~~~v~~Ris~~~- 219 (671)
T 1ps9_A 148 QLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMR-FA------VEVVRAVRERVGNDFIIIYRLSMLD- 219 (671)
T ss_dssp HHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHH-HH------HHHHHHHHHHHCSSSEEEEEEEEEC-
T ss_pred HHHHHHCCCEEEECCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHH-HH------HHHHHHHHHHCCCCCEEEEECCCCC-
T ss_conf 999982999899453421499984212268777766768777768-89------9999999876199853888426411-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 6744333223344456887111134577764156322
Q gi|254780371|r 156 ANTHKKISTGKKEDKFGIPIHQIHSLYAYASTLPGVK 192 (431)
Q Consensus 156 ~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~~~~~~l~ 192 (431)
.-+-|.+.++..++++.+.+. ++.
T Consensus 220 ------------~~~~~~~~~~~~~~~~~l~~~-g~d 243 (671)
T 1ps9_A 220 ------------LVEDGGTFAETVELAQAIEAA-GAT 243 (671)
T ss_dssp ------------CSTTCCCHHHHHHHHHHHHHH-TCS
T ss_pred ------------CCCCCCCHHHHHHHHHHHHHH-CCC
T ss_conf ------------257899889999999999984-872
No 51
>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans}
Probab=68.52 E-value=5.6 Score=18.44 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=10.8
Q ss_pred HHHHHHHHCCCCCCC--EEEEC-CCCC
Q ss_conf 988765310266652--68806-8730
Q gi|254780371|r 218 RDLTQQLRSNGHNIQ--HIDVG-GGLG 241 (431)
Q Consensus 218 ~~~~~~l~~~g~~~~--~ldiG-GGf~ 241 (431)
.++...+.+.|+..+ +||-| ||||
T Consensus 188 k~l~~~l~~~GI~~~~IilDPGig~fG 214 (310)
T 2h9a_B 188 KQLNIMIMEMNLAPNRIIMDPLIGALG 214 (310)
T ss_dssp HHHHHHHHTTTCCGGGEEEECCCCCTT
T ss_pred HHHHHHHHHCCCCHHHEEEECCCCCCC
T ss_conf 999999998699977889815764346
No 52
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=66.74 E-value=6.1 Score=18.21 Aligned_cols=17 Identities=18% Similarity=0.348 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHC
Q ss_conf 89999999988765310
Q gi|254780371|r 210 FHKAFKLLRDLTQQLRS 226 (431)
Q Consensus 210 ~~~~~~~~~~~~~~l~~ 226 (431)
+..-.+.+.++.+.+++
T Consensus 204 ~enR~Rf~~Eii~air~ 220 (363)
T 3l5l_A 204 FDNRSRFLLETLAAVRE 220 (363)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 45606789999999998
No 53
>1muw_A Xylose isomerase; atomic resolution, disorder; 0.86A {Streptomyces olivochromogenes} SCOP: c.1.15.3 PDB: 1s5m_A* 1s5n_A* 2gyi_A* 1xyb_A* 1xyc_A* 1xya_A* 1xyl_A 1xym_A* 1dxi_A 3gnx_A* 1gw9_A* 1xib_A 1xic_A* 1xid_A* 1xie_A* 1xif_A* 1xig_A* 1xih_A* 1xii_A* 1xij_A ...
Probab=65.40 E-value=6.4 Score=18.04 Aligned_cols=127 Identities=16% Similarity=0.126 Sum_probs=68.8
Q ss_pred EEEECCCCHHHHHHHCCCCEEEEEH----------HHHHHHHHHHHHHCCCCCCEEEEEE-------------ECCCCHH
Q ss_conf 5898784299999974997899779----------9999999999986144797899964-------------1079999
Q gi|254780371|r 10 SLHAENVSLEKLAHVVQTPFYCYST----------TAIEKNYLTFSNAFDGMDTMVCYAL-------------KANSNQA 66 (431)
Q Consensus 10 ~l~i~~~~l~~La~~~gTP~yV~d~----------~~i~~n~~~l~~a~~~~~~~i~yAv-------------KaN~~~~ 66 (431)
+-+.+..+..+..++.|.|.+.+.- ..-.+|++++++++...+.++.... =|||.+.
T Consensus 30 r~~~~~~d~~~~~~~lG~~~~~fHd~D~~P~~~~~~e~~~~~~~ik~~l~~~Gl~~~~~T~nlf~~p~~~~Ga~TspD~~ 109 (386)
T 1muw_A 30 RPALDPVETVQRLAELGAHGVTFHDDDLIPFGSSDTERESHIKRFRQALDATGMTVPMATTNLFTHPVFKDGGFTANDRD 109 (386)
T ss_dssp SCCCCHHHHHHHHHHHTCCEEEEEHHHHSCTTCCHHHHHHHHHHHHHHHHHHTCBCCEEECCCSSSGGGTTCSTTCSSHH
T ss_pred CCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCHH
T ss_conf 99989899999999819987973777568889985777999999999999639842130353246855357877895999
Q ss_pred HHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCEEE-CCCCCC----CHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 99999973992898689998652212578431244-477542----0124444206872333322024676877411334
Q gi|254780371|r 67 VIKTLAHLGSGLDIVSEGELRRALAAPVPAERIVF-SGVGKT----IDEIDLALQSGIYCFNVESESELKTLNQRAVSLG 141 (431)
Q Consensus 67 il~~l~~~G~g~dv~S~~El~~al~~G~~~~~Ii~-~g~~k~----~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~ 141 (431)
|-+...+.- ..-+.+|...|.+ .+++ .|.... ..+++.+.+.- +++ ++.+.+.+.+.+
T Consensus 110 vR~~Ai~~v-------k~aidiAa~LGa~--~vvlw~G~eG~~~~~~~d~~~~~~~l-----~e~---L~~v~dya~~~g 172 (386)
T 1muw_A 110 VRRYALRKT-------IRNIDLAVELGAK--TYVAWGGREGAESGAAKDVRVALDRM-----KEA---FDLLGEYVTSQG 172 (386)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHTCS--EEEECCTTCEESSTTSCCHHHHHHHH-----HHH---HHHHHHHHHHHT
T ss_pred HHHHHHHHH-------HHHHHHHHHHCCC--EEEECCCCCCCCCCCCCCHHHHHHHH-----HHH---HHHHHHHHHHHC
T ss_conf 999999999-------9999999994998--48973897776776657999999999-----999---999999999729
Q ss_pred CCEEEEEEEECC
Q ss_conf 421589987237
Q gi|254780371|r 142 KKAPIAFRVNPD 153 (431)
Q Consensus 142 ~~~~I~lRinp~ 153 (431)
..++++|.-.|.
T Consensus 173 ~~v~~~IEpkP~ 184 (386)
T 1muw_A 173 YDIRFAIEPKPN 184 (386)
T ss_dssp CCCEEEECCCSS
T ss_pred CCCEEEECCCCC
T ss_conf 994699613678
No 54
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix bundle (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=63.43 E-value=4.1 Score=19.40 Aligned_cols=158 Identities=12% Similarity=0.134 Sum_probs=71.5
Q ss_pred HHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCC-----H-HHHHHHHHHCC
Q ss_conf 99999997399289868999865221257843124447754201244442068723333220-----2-46768774113
Q gi|254780371|r 66 AVIKTLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVESE-----S-ELKTLNQRAVS 139 (431)
Q Consensus 66 ~il~~l~~~G~g~dv~S~~El~~al~~G~~~~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~-----~-el~~l~~~a~~ 139 (431)
.+.+.+.+ |..-.| ...+..++..|++|..|+...-.+.-..+-...+.|-..+.-... . -+..+......
T Consensus 42 ~l~~all~-gd~~~~--~~~v~~al~~G~~p~~Ii~~~L~pam~~VG~lwe~g~i~v~~e~~as~~~~~~l~~l~~~~~~ 118 (258)
T 2i2x_B 42 PIAKAIFE-GEEDDV--VEGLQAAIEAGKDPIDLIDDALMVGMGVVIRLYDEGVIFLPNVMMSADAMLEGIEYCKENSGA 118 (258)
T ss_dssp HHHHHHHT-TCHHHH--HHHHHHHHHHSCCTTTHHHHTHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred HHHHHHHH-CCHHHH--HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999996-779899--999999998599989999998999999999998689686899999999999999999876233
Q ss_pred C-CCCEEEEEEEECCCCCCCCCC------CCCCCCCCC-CCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHH
Q ss_conf 3-442158998723778674433------322334445-68871111345777641563220023355641564420489
Q gi|254780371|r 140 L-GKKAPIAFRVNPDINANTHKK------ISTGKKEDK-FGIPIHQIHSLYAYASTLPGVKISGVDMHIGSQIDQIESFH 211 (431)
Q Consensus 140 ~-~~~~~I~lRinp~~~~~~~~~------~~tg~~~sK-FGi~~~~~~~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~ 211 (431)
. ..+.+|.+=. |.-+.+.-.. +...|-... .|.+. ...++++.+++. +.+++|++....+.. .
T Consensus 119 ~~~~~g~vv~~t-~~gd~H~lG~~~va~~l~~~G~~V~~LG~~~-p~e~i~~~v~~~-~~d~vglS~~l~~~l---~--- 189 (258)
T 2i2x_B 119 TPKTKGTVVCHV-AEGDVHDIGKNIVTALLRANGYNVVDLGRDV-PAEEVLAAVQKE-KPIMLTGTALMTTTM---Y--- 189 (258)
T ss_dssp CCCCSCEEEEEE-CTTCCCCHHHHHHHHHHHHTTCEEEEEEEEC-CSHHHHHHHHHH-CCSEEEEECCCTTTT---T---
T ss_pred CCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHCCCEEEECCCCC-CHHHHHHHHHHH-CCCEEEEECCCCCCH---H---
T ss_conf 566688489837-9998017899999999998799389789989-999999999982-999899941556767---9---
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEEECCCC
Q ss_conf 99999998876531026665268806873
Q gi|254780371|r 212 KAFKLLRDLTQQLRSNGHNIQHIDVGGGL 240 (431)
Q Consensus 212 ~~~~~~~~~~~~l~~~g~~~~~ldiGGGf 240 (431)
.+.++.+.+++.|..+.++ +||+-
T Consensus 190 ----~~~~~i~~l~~~~~~~~ii-vGGa~ 213 (258)
T 2i2x_B 190 ----AFKEVNDMLLENGIKIPFA-CGGGA 213 (258)
T ss_dssp ----HHHHHHHHHHTTTCCCCEE-EESTT
T ss_pred ----HHHHHHHHHHHCCCCCCEE-EECCC
T ss_conf ----9999999999749999489-88987
No 55
>1xla_A D-xylose isomerase; isomerase(intramolecular oxidoreductse); 2.30A {Arthrobacter SP} SCOP: c.1.15.3 PDB: 1die_A* 1did_A 1xlb_A 1xlc_A* 1xld_A* 1xle_A 1xlf_A* 1xlg_A* 1xlh_A 1xli_A* 1xlj_A* 1xlk_A 1xll_A 1xlm_A* 4xia_A* 5xia_A*
Probab=62.67 E-value=7.2 Score=17.70 Aligned_cols=121 Identities=16% Similarity=0.119 Sum_probs=64.2
Q ss_pred CCHHHHHHHCCCCEEEEE----------HHHHHHHHHHHHHHCCCCCCEE------EEEEE-------CCCCHHHHHHHH
Q ss_conf 429999997499789977----------9999999999998614479789------99641-------079999999999
Q gi|254780371|r 16 VSLEKLAHVVQTPFYCYS----------TTAIEKNYLTFSNAFDGMDTMV------CYALK-------ANSNQAVIKTLA 72 (431)
Q Consensus 16 ~~l~~La~~~gTP~yV~d----------~~~i~~n~~~l~~a~~~~~~~i------~yAvK-------aN~~~~il~~l~ 72 (431)
...-+..++.|.|.+.++ .....+++.++++++...+.++ +|.-+ |||++.|-+...
T Consensus 36 ~~a~~~~~~lG~~~~~fHD~D~~p~~~~~~e~~~~~~~~k~~~~~~Gl~l~~~t~nlf~~p~y~~Ga~TnPD~~VR~~Ai 115 (394)
T 1xla_A 36 VEAVHKLAELGAYGITFHDNDLIPFDATEAEREKILGDFNQALKDTGLKVPMVTTNLFSHPVFKDGGFTSNDRSIRRFAL 115 (394)
T ss_dssp HHHHHHHHHHTCCEEEEEHHHHSCTTCCHHHHHHHHHHHHHHHHHHCCBCCEEECCCSSSGGGTTCSTTCSSHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 99999999819987822423347788987889999999999999709844254266567833026776695999999999
Q ss_pred HCCCCEEEECHHHHHHHHHCCCCCCCEEECCC--C---CCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEE
Q ss_conf 73992898689998652212578431244477--5---420124444206872333322024676877411334421589
Q gi|254780371|r 73 HLGSGLDIVSEGELRRALAAPVPAERIVFSGV--G---KTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIA 147 (431)
Q Consensus 73 ~~G~g~dv~S~~El~~al~~G~~~~~Ii~~g~--~---k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~ 147 (431)
+.- ..=+.++...|- +.+++-+. + -...+++.+.+.- +++ ++.+.+.+.+.+...+++
T Consensus 116 ~~~-------k~~idia~~LGa--~~~vlW~GrdG~~~~~~~d~~~~~d~l-----~e~---l~~v~~~a~~~g~~~~i~ 178 (394)
T 1xla_A 116 AKV-------LHNIDLAAEMGA--ETFVMWGGREGSEYDGSKDLAAALDRM-----REG---VDTAAGYIKDKGYNLRIA 178 (394)
T ss_dssp HHH-------HHHHHHHHHTTC--SEEEECCTTCEESSGGGCCHHHHHHHH-----HHH---HHHHHHHHHHHTCCCEEE
T ss_pred HHH-------HHHHHHHHHHCC--CCEEECCCCCCCCCCCCCCHHHHHHHH-----HHH---HHHHHHHHHHCCCCCEEE
T ss_conf 999-------999999999589--817872687643577766999999999-----999---999999998619884488
Q ss_pred EEEECC
Q ss_conf 987237
Q gi|254780371|r 148 FRVNPD 153 (431)
Q Consensus 148 lRinp~ 153 (431)
|--.|.
T Consensus 179 IEpKP~ 184 (394)
T 1xla_A 179 LEPKPN 184 (394)
T ss_dssp ECCCSS
T ss_pred ECCCCC
T ss_conf 434567
No 56
>3m0m_A L-rhamnose isomerase; beta/alpha barrel, HOMO-tetramer, metal-binding protein, TIM isomerase; HET: AOS; 1.45A {Pseudomonas stutzeri} PDB: 3m0l_A* 3m0h_A* 3m0v_A* 3m0x_A* 3m0y_A* 3itx_A 2hcv_A* 2i57_A* 2i56_A 3ity_A 3iud_A 3iuh_A 3iui_A 3itv_A* 3itt_A* 3itl_A* 3ito_A*
Probab=62.43 E-value=7.3 Score=17.68 Aligned_cols=69 Identities=14% Similarity=0.162 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCC-CCCHHHHHHHHHHHHCCC--CCEEEEEE
Q ss_conf 442048999999998876531026665268806873000266545-531145655565421024--53034410
Q gi|254780371|r 205 DQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHR-PPSSSDYASLIHQYFGNL--QCKIILEP 275 (431)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~-~~~~~~~~~~i~~~~~~~--~~~l~~EP 275 (431)
.|++.-..+++.+.+..+...+.|- +.+.+-+|-|..|..... ...++.+.+.+.+.+... +.++.+||
T Consensus 149 PD~~VR~~AIe~~k~~IdiA~~LGa--~~lviW~GDG~~~p~q~d~~~~~~rl~EsL~eI~~~~~~~~~i~IE~ 220 (438)
T 3m0m_A 149 TNAATRAQAVEHNLECIEIGKAIGS--KALTVWIGDGSNFPGQSNFTRAFERYLSAMAEIYKGLPDDWKLFSEH 220 (438)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHTC--CEEEECCCCEESSTTTSCHHHHHHHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCC--CEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 5999999999999999999998399--84999689877788655899999999999999998474666589876
No 57
>2f46_A Hypothetical protein; 7380613, DUF442, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.41A {Neisseria meningitidis Z2491}
Probab=62.10 E-value=7.4 Score=17.64 Aligned_cols=85 Identities=15% Similarity=0.159 Sum_probs=43.4
Q ss_pred CEEECCCCCCCHHHHHHHHCCCCC-CCCCCCHH------HHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 124447754201244442068723-33322024------67687741133442158998723778674433322334445
Q gi|254780371|r 98 RIVFSGVGKTIDEIDLALQSGIYC-FNVESESE------LKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDK 170 (431)
Q Consensus 98 ~Ii~~g~~k~~~~l~~ai~~gv~~-i~vDs~~e------l~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sK 170 (431)
+-+|.++.-++++++.+.+.|+.+ ||+-...| ...+...+...+... +++-| . + .
T Consensus 22 d~l~~s~qp~~~~~~~L~~~GiktVInLr~~~E~~~~~~~~~~~~~a~~~gi~~---~~~p~-~---------~-----~ 83 (156)
T 2f46_A 22 EHLYISPQLTKADAEQIAQLGIKTIICNRPDREEESQPDFAQIKQWLEQAGVTG---FHHQP-V---------T-----A 83 (156)
T ss_dssp TTEEEESCCCGGGHHHHHHHTCCEEEECSCTTSSTTCCCHHHHHHHHGGGTCCE---EEECC-C---------C-----T
T ss_pred CCEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCCE---EEEEC-C---------C-----C
T ss_conf 982671898999999999869978996788986778858999999999749954---89624-6---------7-----7
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 68871111345777641563220023355641
Q gi|254780371|r 171 FGIPIHQIHSLYAYASTLPGVKISGVDMHIGS 202 (431)
Q Consensus 171 FGi~~~~~~~~~~~~~~~~~l~l~GlH~H~GS 202 (431)
-..+.+.+..+.+.+...++ .+=+||+.|+
T Consensus 84 ~~~~~~~i~~~~~~l~~~~~--pVlvHC~sG~ 113 (156)
T 2f46_A 84 RDIQKHDVETFRQLIGQAEY--PVLAYCRTGT 113 (156)
T ss_dssp TTCCHHHHHHHHHHHHTSCS--SEEEECSSSH
T ss_pred CCCCHHHHHHHHHHHHCCCC--CEEEECCCCC
T ss_conf 76648999999999843689--7898818997
No 58
>3ktc_A Xylose isomerase; putative sugar isomerase, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043}
Probab=62.02 E-value=4.4 Score=19.13 Aligned_cols=96 Identities=16% Similarity=0.146 Sum_probs=39.9
Q ss_pred CHHHHHHHHHCCCCCHHHHHHH-------HHHCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCC-CCCCCCC-
Q ss_conf 1345777641563220023355-------64156-442048999999998876531026665268806873-0002665-
Q gi|254780371|r 178 IHSLYAYASTLPGVKISGVDMH-------IGSQI-DQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGL-GIAYHSD- 247 (431)
Q Consensus 178 ~~~~~~~~~~~~~l~l~GlH~H-------~GS~~-~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf-~i~y~~~- 247 (431)
..++.+.++++ ||++.++... .||-+ .|++....+++.+.+.++...+.|- +.+.+-+|. +..+...
T Consensus 63 ~~elk~~l~~~-GL~v~~~~~~~~~~~~~~G~lt~pD~~~R~~ai~~~k~~id~A~~lGa--~~v~v~~g~~g~~~~~~~ 139 (333)
T 3ktc_A 63 LSEVKDALKDA-GLKAIGITPEIYLQKWSRGAFTNPDPAARAAAFELMHESAGIVRELGA--NYVKVWPGQDGWDYPFQV 139 (333)
T ss_dssp HHHHHHHHHHH-TCEEEEEEECTTSGGGTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTC--SEEEECCTTCEESSTTSS
T ss_pred HHHHHHHHHHC-CCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC--CEEEEECCCCCCCCCCCC
T ss_conf 99999999975-995889715886655566767796999999999999999999998499--726862357887778643
Q ss_pred CCCCCHHHHHHHH---HHHHCCCCCEEEEEEC
Q ss_conf 4553114565556---5421024530344101
Q gi|254780371|r 248 HRPPSSSDYASLI---HQYFGNLQCKIILEPG 276 (431)
Q Consensus 248 ~~~~~~~~~~~~i---~~~~~~~~~~l~~EPG 276 (431)
+....++.+.+.+ .+...+.+..+.+||-
T Consensus 140 ~~~~~~~~~~e~l~~i~~~a~~~gv~i~~E~~ 171 (333)
T 3ktc_A 140 SHKNLWKLAVDGMRDLAGANPDVKFAIEYKPR 171 (333)
T ss_dssp CHHHHHHHHHHHHHHHHHTCTTSEEEEECCSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 69999999999999999874306769997325
No 59
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=61.43 E-value=4.1 Score=19.37 Aligned_cols=28 Identities=11% Similarity=-0.002 Sum_probs=12.2
Q ss_pred CCHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 2012444420687233332202467687
Q gi|254780371|r 107 TIDEIDLALQSGIYCFNVESESELKTLN 134 (431)
Q Consensus 107 ~~~~l~~ai~~gv~~i~vDs~~el~~l~ 134 (431)
+.+.|+..+.-.|..|.+...+-++.|.
T Consensus 73 ta~~Ir~~~~iPVVeI~vs~~Dil~aL~ 100 (225)
T 2pju_A 73 NGAYLKSRLSVPVILIKPSGYDVLQFLA 100 (225)
T ss_dssp HHHHHHTTCSSCEEEECCCHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEECCHHHHHHHHH
T ss_conf 8999998589988997078768999999
No 60
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=59.65 E-value=8.1 Score=17.35 Aligned_cols=57 Identities=21% Similarity=0.131 Sum_probs=31.1
Q ss_pred EEEECHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 898689998652212578431244477542012444420687233332202467687741133442158998
Q gi|254780371|r 78 LDIVSEGELRRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFR 149 (431)
Q Consensus 78 ~dv~S~~El~~al~~G~~~~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lR 149 (431)
+.|-|..++..|.++|.+ ||-+++. +..|-.+- |...++.+.+...+.+.++.++||
T Consensus 6 vcv~~~~~~~~A~~~Gad--RiELc~~----------l~~GGlTP---s~~~i~~~~~~~~~~~ipV~vMIR 62 (224)
T 2bdq_A 6 FCAENLTDLTRLDKAIIS--RVELCDN----------LAVGGTTP---SYGVIKEANQYLHEKGISVAVMIR 62 (224)
T ss_dssp EEEETTTTGGGCCTTTCC--EEEEEBC----------GGGTCBCC---CHHHHHHHHHHHHHTTCEEEEECC
T ss_pred EEECCHHHHHHHHHCCCC--EEEECCC----------CCCCCCCC---CHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 996999999999983999--8998476----------56689799---999999999860337998699961
No 61
>2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.70A {Listeria monocytogenes} SCOP: c.1.15.4
Probab=59.65 E-value=8.1 Score=17.35 Aligned_cols=20 Identities=10% Similarity=0.192 Sum_probs=9.4
Q ss_pred HHHHHHHHCCCCCHHHHHHHH
Q ss_conf 457776415632200233556
Q gi|254780371|r 180 SLYAYASTLPGVKISGVDMHI 200 (431)
Q Consensus 180 ~~~~~~~~~~~l~l~GlH~H~ 200 (431)
++.+.+.++ ||.+.+++.+.
T Consensus 72 ~l~~~l~~~-GL~i~~i~~~~ 91 (296)
T 2g0w_A 72 DMLRILDEH-NMKVTEVEYIT 91 (296)
T ss_dssp HHHHHHHHT-TCEEEEEECBC
T ss_pred HHHHHHHHC-CCEEEEEECCC
T ss_conf 999999971-99799986554
No 62
>2q02_A Putative cytoplasmic protein; NP_463296.1, structural genomics, joint center for structural genomics, JCSG; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=59.58 E-value=8.1 Score=17.35 Aligned_cols=84 Identities=14% Similarity=0.130 Sum_probs=43.9
Q ss_pred CHHHHHHHHHCCCCCHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHH
Q ss_conf 134577764156322002335564156442-0489999999988765310266652688068730002665455311456
Q gi|254780371|r 178 IHSLYAYASTLPGVKISGVDMHIGSQIDQI-ESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDY 256 (431)
Q Consensus 178 ~~~~~~~~~~~~~l~l~GlH~H~GS~~~~~-~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~ 256 (431)
..++.+.++++ ||.+.+++... ...+. +...+.++.+.+++.++ | .+.+.+.+|..- .....+.+
T Consensus 53 ~~~~~~~l~~~-gl~i~~l~~~~--~~~~~~~~~~~~~~~~i~~A~~l---G--~~~i~~~~~~~~------~~~~~~~~ 118 (272)
T 2q02_A 53 YNQVRNLAEKY-GLEIVTINAVY--PFNQLTEEVVKKTEGLLRDAQGV---G--ARALVLCPLNDG------TIVPPEVT 118 (272)
T ss_dssp HHHHHHHHHHT-TCEEEEEEEET--TTTSCCHHHHHHHHHHHHHHHHH---T--CSEEEECCCCSS------BCCCHHHH
T ss_pred HHHHHHHHHHC-CCCEEEECCCC--CCCCCCHHHHHHHHHHHHHHHHC---C--CCEEEEECCCCC------CCCHHHHH
T ss_conf 99999999985-99478833654--66775589999999999999980---9--997999279987------61039999
Q ss_pred H---HHHHHHHCCCCCEEEEEE
Q ss_conf 5---556542102453034410
Q gi|254780371|r 257 A---SLIHQYFGNLQCKIILEP 275 (431)
Q Consensus 257 ~---~~i~~~~~~~~~~l~~EP 275 (431)
. ..+.+...+.++++.+||
T Consensus 119 ~~~l~~l~~~a~~~Gv~l~~E~ 140 (272)
T 2q02_A 119 VEAIKRLSDLFARYDIQGLVEP 140 (272)
T ss_dssp HHHHHHHHHHHHTTTCEEEECC
T ss_pred HHHHHHHHHHHHCCCCEEEEEE
T ss_conf 9999999988612697799998
No 63
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=58.68 E-value=8.4 Score=17.25 Aligned_cols=30 Identities=7% Similarity=-0.019 Sum_probs=16.2
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 568871111345777641563220023355
Q gi|254780371|r 170 KFGIPIHQIHSLYAYASTLPGVKISGVDMH 199 (431)
Q Consensus 170 KFGi~~~~~~~~~~~~~~~~~l~l~GlH~H 199 (431)
.+|++.+++....+..++.+.-.+..+.-+
T Consensus 137 ~lg~~~~~~~~~~~~~r~~d~~~l~~~~~~ 166 (413)
T 3l9w_A 137 SLGLGPYEARERADVFRRFNIQMVEEMAMV 166 (413)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 829999999999999997169999987544
No 64
>2q5c_A NTRC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=58.51 E-value=5 Score=18.79 Aligned_cols=36 Identities=28% Similarity=0.214 Sum_probs=15.0
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 754201244442068723333220246768774113
Q gi|254780371|r 104 VGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVS 139 (431)
Q Consensus 104 ~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~ 139 (431)
....-+.+...+...+..+.++|.+|++.....+++
T Consensus 105 ~~~~~~~i~~ll~~~i~~~~~~~~~e~~~~i~~l~~ 140 (196)
T 2q5c_A 105 SIVDKHEIEAMLGVKIKEFLFSSEDEITTLISKVKT 140 (196)
T ss_dssp CSSCHHHHHHHHTCEEEEEEECSGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 015899999985995599996688999999999998
No 65
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=57.41 E-value=8.8 Score=17.11 Aligned_cols=93 Identities=8% Similarity=-0.057 Sum_probs=50.3
Q ss_pred CCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHH
Q ss_conf 11113457776415632200233556415644204899999999887653102666526880687300026654553114
Q gi|254780371|r 175 IHQIHSLYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSS 254 (431)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~ 254 (431)
.....++.+.+.++ ||++.++|+.......+.+...+.++.+....+..+..|. +++.++.+- . .....+++
T Consensus 75 ~~~~~~~~~~l~~~-Gl~i~s~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~--~~~~~~~~~-~----~~~~~~~~ 146 (305)
T 3obe_A 75 FIASKDYKKMVDDA-GLRISSSHLTPSLREYTKENMPKFDEFWKKATDIHAELGV--SCMVQPSLP-R----IENEDDAK 146 (305)
T ss_dssp CBCHHHHHHHHHHT-TCEEEEEBCCCSCCCCCGGGHHHHHHHHHHHHHHHHHHTC--SEEEECCCC-C----CSSHHHHH
T ss_pred HHHHHHHHHHHHHC-CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC--CEEECCCCC-C----CCCHHHHH
T ss_conf 32099999999984-9868542665332467578899999999999999998599--757706899-8----88889999
Q ss_pred HHHHHHH---HHHCCCCCEEEEEE
Q ss_conf 5655565---42102453034410
Q gi|254780371|r 255 DYASLIH---QYFGNLQCKIILEP 275 (431)
Q Consensus 255 ~~~~~i~---~~~~~~~~~l~~EP 275 (431)
.+++.+. +...+.++++.+|+
T Consensus 147 ~~~e~l~~~~~~a~~~Gv~l~~e~ 170 (305)
T 3obe_A 147 VVSEIFNRAGEITKKAGILWGYHN 170 (305)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEC
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 999999999999997797799945
No 66
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*
Probab=51.39 E-value=11 Score=16.47 Aligned_cols=25 Identities=8% Similarity=-0.001 Sum_probs=10.7
Q ss_pred CCCCCHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 71111345777641563220023355
Q gi|254780371|r 174 PIHQIHSLYAYASTLPGVKISGVDMH 199 (431)
Q Consensus 174 ~~~~~~~~~~~~~~~~~l~l~GlH~H 199 (431)
+.+++.++.+.++++ ++.+..+++|
T Consensus 45 ~~~~~~~~~~~~~~~-~~~~~~~~~~ 69 (287)
T 2x7v_A 45 SDEAATKFKREMKKH-GIDWENAFCH 69 (287)
T ss_dssp CHHHHHHHHHHHHHH-TCCGGGEEEE
T ss_pred CHHHHHHHHHHHHHC-CCCCEEEEEC
T ss_conf 999999999999985-9984278742
No 67
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomics initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=49.09 E-value=12 Score=16.23 Aligned_cols=72 Identities=15% Similarity=0.204 Sum_probs=42.6
Q ss_pred CCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEE-CCEEEEEEE
Q ss_conf 23467776158999810005666656210056688888999967970233340277889866599998-896899982
Q gi|254780371|r 327 VNPAGDRLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMVN-GSQFHIIRP 403 (431)
Q Consensus 327 ~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~s~~s~fn~~p~p~~v~v~-~g~~~~ir~ 403 (431)
.+-.......+|.|-|+-. |+.+-....--...++||.++|..-+-+....+.+ .+|..|+++ +++..-+|+
T Consensus 23 ~Nv~NG~Rf~TYvI~g~~g-Sg~I~lNGaAAr~~~~GD~vII~sya~~~~~e~~~----~~P~vv~vde~N~i~~i~~ 95 (96)
T 1vc3_B 23 YDITNGARLTTYALPGERG-SGVIGINGAAAHLVKPGDLVILVAYGVFDEEEARN----LKPTVVLVDERNRILEVRK 95 (96)
T ss_dssp EETTTCCEEEEECEEECTT-TTCEEEEGGGGGTCCTTCEEEEEEEEEECHHHHTT----CCCEEEEECTTCCEEEEEE
T ss_pred EECCCCCEEEEEEEECCCC-CCEEEECCHHHHCCCCCCEEEEEECCCCCHHHHHC----CCCEEEEECCCCCEEEEEC
T ss_conf 9999995888999972488-76487467887347999999999877379889626----8777999999998998526
No 68
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=48.71 E-value=12 Score=16.19 Aligned_cols=17 Identities=12% Similarity=0.067 Sum_probs=9.8
Q ss_pred CHHHHHHHCCCC-EEEEE
Q ss_conf 299999974997-89977
Q gi|254780371|r 17 SLEKLAHVVQTP-FYCYS 33 (431)
Q Consensus 17 ~l~~La~~~gTP-~yV~d 33 (431)
-|.+..+++|-- +|.+-
T Consensus 15 ~l~~~L~~~Gv~~vf~~p 32 (568)
T 2c31_A 15 VLIDALKMNDIDTMYGVV 32 (568)
T ss_dssp HHHHHHHHTTCCEEEECC
T ss_pred HHHHHHHHCCCCEEEEEC
T ss_conf 999999987998999937
No 69
>1a53_A IGPS, indole-3-glycerolphosphate synthase; thermostable, TIM-barrel; HET: IGP; 2.00A {Sulfolobus solfataricus} SCOP: c.1.2.4 PDB: 1lbf_A* 1lbl_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 2c3z_A 3b5v_A
Probab=48.66 E-value=12 Score=16.19 Aligned_cols=16 Identities=38% Similarity=0.418 Sum_probs=7.6
Q ss_pred HHHHHHHHHHCCCCCC
Q ss_conf 2467687741133442
Q gi|254780371|r 128 SELKTLNQRAVSLGKK 143 (431)
Q Consensus 128 ~el~~l~~~a~~~~~~ 143 (431)
.+++.+.+.|.++|..
T Consensus 139 ~~l~~l~~~a~~lGle 154 (247)
T 1a53_A 139 RELESLLEYARSYGME 154 (247)
T ss_dssp HHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHCCE
T ss_conf 8899999999984987
No 70
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=48.48 E-value=12 Score=16.17 Aligned_cols=30 Identities=13% Similarity=0.205 Sum_probs=14.4
Q ss_pred CCCCCCHHHHHHHHHHC---CCCCCEEEEEEEE
Q ss_conf 33322024676877411---3344215899872
Q gi|254780371|r 122 FNVESESELKTLNQRAV---SLGKKAPIAFRVN 151 (431)
Q Consensus 122 i~vDs~~el~~l~~~a~---~~~~~~~I~lRin 151 (431)
..+++.+++....+.|- ..+++.+|-|-+-
T Consensus 136 ~~~~~~~~~~~~l~~A~~~a~~~~~gpv~i~~p 168 (566)
T 1ozh_A 136 IEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLP 168 (566)
T ss_dssp EECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred ECCCCHHHHHHHHHHHHHHHHCCCCCCEEECCC
T ss_conf 115888899999999999886089977782584
No 71
>2d1z_A Endo-1,4-beta-D-xylanase; TIM-barrel, retaining enzyme, catalytic-site mutant, chemical rescue, hydrolase; 1.60A {Streptomyces olivaceoviridis} PDB: 2d20_A* 2d22_A 2d23_A 2d24_A* 1xyf_A 1isw_A* 1isx_A* 1isy_A* 1isv_A* 1it0_A* 1v6u_A* 1v6v_A* 1v6w_A* 1v6x_A* 1isz_A
Probab=48.30 E-value=12 Score=16.15 Aligned_cols=55 Identities=15% Similarity=0.214 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHCC-CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC--CCCEEEECC
Q ss_conf 1134577764156-3220023355641564420489999999988765310266--652688068
Q gi|254780371|r 177 QIHSLYAYASTLP-GVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGH--NIQHIDVGG 238 (431)
Q Consensus 177 ~~~~~~~~~~~~~-~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~--~~~~ldiGG 238 (431)
...++++.+++.. -++-+|+|+|.+....+.+.+.+.++.. .+.|. .+..+|+.+
T Consensus 184 ~~~~~v~~l~~~g~piDgIG~Q~H~~~~~~~~~~~~~~l~~~-------~~~Gl~i~ITElDv~~ 241 (436)
T 2d1z_A 184 GVYNMVRDFKQRGVPIDCVGFQSHFNSGSPYNSNFRTTLQNF-------AALGVDVAITELDIQG 241 (436)
T ss_dssp HHHHHHHHHHHHTCCCCEEEECCEEBTTBCCCTTHHHHHHHH-------HTTTCEEEEEEEEETT
T ss_pred HHHHHHHHHHHCCCEEEEEEEEEEECCCCCCHHHHHHHHHHH-------HHCCCCEEEEEEECCC
T ss_conf 999999999978981402300155358999899999999999-------8669916997756677
No 72
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural genomics, JCSG, protein structure initiative, PSI; HET: NAP; 1.78A {Thermotoga maritima MSB8} SCOP: e.22.1.2
Probab=47.03 E-value=13 Score=16.02 Aligned_cols=72 Identities=13% Similarity=0.179 Sum_probs=47.9
Q ss_pred CCCCEEEC-CEEEECCC---CHHHHHHHCC--CCEEEEEHHHHHHH--HHHHHHHCCCCC--CEEEEEEECCCCHHHHHH
Q ss_conf 98716668-85898784---2999999749--97899779999999--999998614479--789996410799999999
Q gi|254780371|r 1 MSAFKYFE-GSLHAENV---SLEKLAHVVQ--TPFYCYSTTAIEKN--YLTFSNAFDGMD--TMVCYALKANSNQAVIKT 70 (431)
Q Consensus 1 m~~~~~~~-~~l~i~~~---~l~~La~~~g--TP~yV~d~~~i~~n--~~~l~~a~~~~~--~~i~yAvKaN~~~~il~~ 70 (431)
|.+|.|.. .+..++.- .+.++++++| .+|.|.+...++++ ++++.+.|...+ +.++.-+..||....+..
T Consensus 13 M~~f~f~~P~~i~fG~g~l~~l~~~l~~~g~kkvliVt~~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~pt~~~v~~ 92 (407)
T 1vlj_A 13 MENFVFHNPTKIVFGRGTIPKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHE 92 (407)
T ss_dssp CCCEEECCCCEEEESTTCGGGHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHH
T ss_pred CCCEEEECCCEEEECCCHHHHHHHHHHHCCCCEEEEEECCCHHHHCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHH
T ss_conf 58818738985998629999999999965998589998875788752999999999865993999857079999999999
Q ss_pred HH
Q ss_conf 99
Q gi|254780371|r 71 LA 72 (431)
Q Consensus 71 l~ 72 (431)
+.
T Consensus 93 ~~ 94 (407)
T 1vlj_A 93 AV 94 (407)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 73
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=44.02 E-value=8.6 Score=17.18 Aligned_cols=47 Identities=9% Similarity=0.143 Sum_probs=26.8
Q ss_pred EEEEHHHHHHHHHHHHHHCC-------C-CCCEEEEEEEC--CCCHHHHHHHHHCCC
Q ss_conf 99779999999999998614-------4-79789996410--799999999997399
Q gi|254780371|r 30 YCYSTTAIEKNYLTFSNAFD-------G-MDTMVCYALKA--NSNQAVIKTLAHLGS 76 (431)
Q Consensus 30 yV~d~~~i~~n~~~l~~a~~-------~-~~~~i~yAvKa--N~~~~il~~l~~~G~ 76 (431)
.||+...+.++++...+.-+ + -...+.|++|- .....+|+.+.+.+.
T Consensus 4 ~~~~~~vla~~i~D~~~~~~~i~~~~~~~~ktSiiFSLkd~vGsLaraLkvFe~~~I 60 (429)
T 1phz_A 4 VVLENGVLSRKLSDFGQETSYIEDNSNQNGAISLIFSLKEEVGALAKVLRLFEENDI 60 (429)
T ss_dssp ---------------CCCCSCCCCCCCSSCCEEEEEEEECCTTHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCC
T ss_conf 442222566667651367772167878786089999968761589999999998693
No 74
>1bxb_A Xylose isomerase; xylose metabolism; 2.20A {Thermus thermophilus HB8} SCOP: c.1.15.3 PDB: 1bxc_A
Probab=43.90 E-value=14 Score=15.70 Aligned_cols=115 Identities=11% Similarity=0.000 Sum_probs=53.9
Q ss_pred HHHCCCCEEEEEH----------HHHHHHHHHHHHHCCCCCCEEE------EE-------EECCCCHHHHHHHHHCCCCE
Q ss_conf 9974997899779----------9999999999986144797899------96-------41079999999999739928
Q gi|254780371|r 22 AHVVQTPFYCYST----------TAIEKNYLTFSNAFDGMDTMVC------YA-------LKANSNQAVIKTLAHLGSGL 78 (431)
Q Consensus 22 a~~~gTP~yV~d~----------~~i~~n~~~l~~a~~~~~~~i~------yA-------vKaN~~~~il~~l~~~G~g~ 78 (431)
..+.|-|.+.++- ..-.++++++++++...+.++. |. .=|||++.|-+...+.-
T Consensus 42 ~~~lG~~~v~fHd~Dl~P~~~~~~e~~~~~~~lk~~l~~~Gl~~~~~t~nlf~~p~y~~Gs~tnPDp~vR~~Ai~~~--- 118 (387)
T 1bxb_A 42 LAELGAYGVNLHDEDLIPRGTPPQERDQIVRRFKKALDETGLKVPMVTANLFSDPAFKDGAFTSPDPWVRAYALRKS--- 118 (387)
T ss_dssp HHHHTCSEEEEEHHHHSCTTCCTTHHHHHHHHHHHHHHHHTCBCCEEECCCSSSGGGGGCSTTCSSHHHHHHHHHHH---
T ss_pred HHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHCCCCCCCCHHHHHHHHHHH---
T ss_conf 98349977832666558889998999999999999999639911242365445731314877897989999999999---
Q ss_pred EEECHHHHHHHHHCCCCCCCEEE-CCCCCCC----HHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECC
Q ss_conf 98689998652212578431244-4775420----124444206872333322024676877411334421589987237
Q gi|254780371|r 79 DIVSEGELRRALAAPVPAERIVF-SGVGKTI----DEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPD 153 (431)
Q Consensus 79 dv~S~~El~~al~~G~~~~~Ii~-~g~~k~~----~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~ 153 (431)
..=+.++.+.|.+ .+++ .|..-.. .+.+.+.+. .+++ ++.+.+.+.+.+...+++|.-.|.
T Consensus 119 ----k~aId~a~~LGa~--~~vlW~G~dG~~~~~~~d~~~~~~~-----~~e~---l~~v~~~a~~~g~g~~~~iEpKP~ 184 (387)
T 1bxb_A 119 ----LETMDLGAELGAE--IYVVWPGREGAEVEATGKARKVWDW-----VREA---LNFMAAYAEDQGYGYRFALEPKPN 184 (387)
T ss_dssp ----HHHHHHHHHHTCC--EEEECCTTCEESCGGGCGGGTHHHH-----HHHH---HHHHHHHHHHHTCCCEEEECCCSS
T ss_pred ----HHHHHHHHHHCCC--EEEECCCCCCCCCCCCCCHHHHHHH-----HHHH---HHHHHHHHHHCCCCCEEEEECCCC
T ss_conf ----9999999995898--6997578787778765589999999-----9999---999998776507572699815788
No 75
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=43.48 E-value=14 Score=15.66 Aligned_cols=50 Identities=14% Similarity=0.361 Sum_probs=24.1
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCC
Q ss_conf 34577764156322002335564156442048999999998876531026665268806873
Q gi|254780371|r 179 HSLYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGL 240 (431)
Q Consensus 179 ~~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf 240 (431)
.++++.+++. +..++|++..+ ...+..+.++.+.+++.|+++.++ +||+-
T Consensus 139 ~~~v~~~~~~-~~d~iglS~ll----------t~s~~~m~~~~~~l~~~g~~~~v~-vGGa~ 188 (579)
T 3bul_A 139 EKILRTAKEV-NADLIGLSGLI----------TPSLDEMVNVAKEMERQGFTIPLL-IGGAT 188 (579)
T ss_dssp HHHHHHHHHH-TCSEEEEECCS----------THHHHHHHHHHHHHHHTTCCSCEE-EESTT
T ss_pred HHHHHHHHHH-CCCEEEEECCC----------HHHHHHHHHHHHHHHHHCCCCCEE-ECCCC
T ss_conf 9999999984-99789995334----------777999999999999728987178-32640
No 76
>1v97_A XD, xanthine dehydrogenase; molybdopterin, FYX-051, reaction intermediate, oxidoreductase; HET: MTE FAD FYX; 1.94A {Bos taurus} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.87.2.1 d.133.1.1 d.145.1.3 PDB: 1fo4_A* 1vdv_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 2e3t_A* 1wyg_A* 3b9j_C* 1fiq_C* 3eub_C* 3etr_C* 1fiq_B* 3b9j_B* 3etr_B* 3eub_B* 3b9j_A* 1fiq_A* 3eub_A* 3etr_A*
Probab=42.69 E-value=13 Score=15.96 Aligned_cols=48 Identities=19% Similarity=0.400 Sum_probs=28.2
Q ss_pred HHHHHHCCC------CEEEEEHHHHHHH-----HHHHHHHCCCCCCEEEEEEECCCCHHHHHHHH
Q ss_conf 999997499------7899779999999-----99999861447978999641079999999999
Q gi|254780371|r 19 EKLAHVVQT------PFYCYSTTAIEKN-----YLTFSNAFDGMDTMVCYALKANSNQAVIKTLA 72 (431)
Q Consensus 19 ~~La~~~gT------P~yV~d~~~i~~n-----~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~ 72 (431)
+.|++-+|| |=||.+.-.+.+| .+++.++|.+. +| .|---..|+..+.
T Consensus 103 ~~l~~~hgsQCGfCTPGfVMsmyal~~~~~~~t~~~i~~al~GN---LC---RCTGYrpIldA~~ 161 (1332)
T 1v97_A 103 ERIAKSHGSQCGFCTPGIVMSMYTLLRNQPEPTVEEIEDAFQGN---LC---RCTGYRPILQGFR 161 (1332)
T ss_dssp HHHHHTTCCSSCSSHHHHHHHHHHHHHHCSSCCHHHHHHTTTTC---CC---SSSCSHHHHHHHG
T ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCC---CC---CCCCCHHHHHHHH
T ss_conf 99986399838889638999999999769999999999873821---10---1479799999999
No 77
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=40.99 E-value=16 Score=15.41 Aligned_cols=40 Identities=10% Similarity=0.045 Sum_probs=20.4
Q ss_pred CCEEEEECCCCHHHHHHC--CCCCCCCCEEEEE-ECCEEEEEE
Q ss_conf 889999679702333402--7788986659999-889689998
Q gi|254780371|r 363 GDLLYIEKTGAYGAVQSG--TYNSRLLIPEIMV-NGSQFHIIR 402 (431)
Q Consensus 363 GD~l~i~~~GAY~~s~~s--~fn~~p~p~~v~v-~~g~~~~ir 402 (431)
...++|..=|++.+++.. +.-.+..|..++| +|+..-+++
T Consensus 453 ~~vv~i~GDG~f~~~~~eL~Ta~r~~lpi~ivV~NN~~ygi~~ 495 (578)
T 3lq1_A 453 QPMFLLIGDLSFYHDMNGLLMAKKYKMNLTIVIVNNDGGGIFS 495 (578)
T ss_dssp SSEEEEEEHHHHHHTGGGGHHHHHTTCCEEEEEECCC------
T ss_pred CCEEEEECCHHHHHCHHHHHHHHHHCCCEEEEEEECCCCCHHH
T ss_conf 9889998842750079999999980929099999799872661
No 78
>1rm6_A 4-hydroxybenzoyl-COA reductase alpha subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.41.1.1 d.133.1.1 PDB: 1sb3_A*
Probab=40.23 E-value=15 Score=15.44 Aligned_cols=10 Identities=40% Similarity=0.763 Sum_probs=4.8
Q ss_pred EEEECCCCCC
Q ss_conf 6880687300
Q gi|254780371|r 233 HIDVGGGLGI 242 (431)
Q Consensus 233 ~ldiGGGf~i 242 (431)
.-.+|||||.
T Consensus 238 ~~~~GGgFG~ 247 (769)
T 1rm6_A 238 KPFLGGGFGA 247 (769)
T ss_dssp CCBCCCCTTT
T ss_pred ECCCCCCCCC
T ss_conf 3244564546
No 79
>3igz_B Cofactor-independent phosphoglycerate mutase; glycolysis, cobalt, isomerase; HET: 3PG 2PG; 1.90A {Leishmania mexicana} PDB: 3igy_B*
Probab=40.07 E-value=16 Score=15.32 Aligned_cols=118 Identities=21% Similarity=0.215 Sum_probs=64.5
Q ss_pred CCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEE-EEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3124447754201244442068723333220246768774113344215-899872377867443332233444568871
Q gi|254780371|r 97 ERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAP-IAFRVNPDINANTHKKISTGKKEDKFGIPI 175 (431)
Q Consensus 97 ~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~-I~lRinp~~~~~~~~~~~tg~~~sKFGi~~ 175 (431)
.||++-. -.-|..|++.|-. +. -..|..+.+.+++.+...- +|| ++.|+-.| ..
T Consensus 85 GRiv~Qd----l~rIn~aI~~g~f-~~---n~~l~~~i~~~k~~~~~lHL~GL-------------lSdGGVHS----H~ 139 (561)
T 3igz_B 85 GRVALQG----ASLVDDAIKSGEI-YT---GEGYRYLHGAFSKEGSTLHLIGL-------------LSDGGVHS----RD 139 (561)
T ss_dssp SSCCCCH----HHHHHHHHHHSGG-GT---SHHHHHHHHHHTSTTCCEEEEEE-------------CSSCCSSC----CH
T ss_pred CEEECCC----HHHHHHHHHCCCC-CC---CHHHHHHHHHHHHCCCCEEEEEE-------------ECCCCCCH----HH
T ss_conf 5006344----1889999863971-24---99999999999863981699998-------------54885421----27
Q ss_pred CCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCC
Q ss_conf 11134577764156322002335564156442048999999998876531026665268806873
Q gi|254780371|r 176 HQIHSLYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGL 240 (431)
Q Consensus 176 ~~~~~~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf 240 (431)
+.+.++++.+++. +++-+=||+..-=.=..+......++.+.++..++...+...++-.++|.+
T Consensus 140 dHL~ali~~a~~~-gv~~V~lH~f~DGRDt~P~Sa~~yl~~l~~~l~~~~~~~~~~~IASi~GRy 203 (561)
T 3igz_B 140 NQIYSIIEHAVKD-GAKRIRVHALYDGRDVPDGSSFRFTDELEAVLAKVRQNGCDAAIASGGGRM 203 (561)
T ss_dssp HHHHHHHHHHHHT-TCCEEEEEEEECSSSSCTTTHHHHHHHHHHHHHHHHTTTCEEEEEEEEETT
T ss_pred HHHHHHHHHHHHC-CCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
T ss_conf 7899999999972-996189998407988887217999999998765542047864899862246
No 80
>1w32_A Endo-1,4-beta-xylanase A precursor; mutant, calcium ION, thermostable, glycosyle hydrolase, family 10, error prone PCR, hydrolase; 1.2A {Cellvibrio japonicus} SCOP: c.1.8.3 PDB: 1w2p_A 1w2v_A 1w3h_A 1clx_A 1e5n_A* 1xys_A
Probab=39.89 E-value=16 Score=15.30 Aligned_cols=59 Identities=17% Similarity=0.182 Sum_probs=26.7
Q ss_pred CHHHHHHHHHCC-CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCC
Q ss_conf 134577764156-32200233556415644204899999999887653102666526880687
Q gi|254780371|r 178 IHSLYAYASTLP-GVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGG 239 (431)
Q Consensus 178 ~~~~~~~~~~~~-~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGG 239 (431)
..++++.+.+.. .+.-+|++.|.+++..+++.+.++++.+..+... .-+.+..+|+...
T Consensus 194 ~~~~v~~l~~~g~~idgiG~Q~H~~~~~~~~~~~~~~l~~~~~~g~~---l~i~ITEldv~~~ 253 (348)
T 1w32_A 194 LVNLVQRLLNNGVPIDGVGFQMHVMNDYPSIANIRQAMQKIVALSPT---LKIKITELDVRLN 253 (348)
T ss_dssp HHHHHHHHHHTTCCCCEEEECCEEESSSSCHHHHHHHHHHHHTTCSS---CEEEEEEEEEESC
T ss_pred HHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCC---CEEEEEEEEECCC
T ss_conf 99999999968997464203500357899999999999999972899---7079987565167
No 81
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, cytoplasm, DNA damage, DNA recombination; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=39.74 E-value=6.1 Score=18.19 Aligned_cols=48 Identities=21% Similarity=0.247 Sum_probs=23.8
Q ss_pred HHHHHHHH-CCCCCCCEE-ECCCCCCCH---HH---HHHHHCCCCCCCCCCCHHHH
Q ss_conf 99865221-257843124-447754201---24---44420687233332202467
Q gi|254780371|r 84 GELRRALA-APVPAERIV-FSGVGKTID---EI---DLALQSGIYCFNVESESELK 131 (431)
Q Consensus 84 ~El~~al~-~G~~~~~Ii-~~g~~k~~~---~l---~~ai~~gv~~i~vDs~~el~ 131 (431)
..|..++. -|+|..+|+ +.||..+-. -+ ..+-+.|...+-+|++.-+.
T Consensus 47 ~~lD~~lg~GG~p~g~i~ei~G~~~sGKT~~al~~~~~~q~~g~~~~~iD~E~~~~ 102 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALD 102 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred HHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 89999875799468808999898766689999999997635898799998755589
No 82
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Probab=38.56 E-value=15 Score=15.56 Aligned_cols=34 Identities=12% Similarity=0.021 Sum_probs=18.5
Q ss_pred CCCHHHHHHHHHHHHH-----HHHHHCCCCCCCEEEECCC
Q ss_conf 4420489999999988-----7653102666526880687
Q gi|254780371|r 205 DQIESFHKAFKLLRDL-----TQQLRSNGHNIQHIDVGGG 239 (431)
Q Consensus 205 ~~~~~~~~~~~~~~~~-----~~~l~~~g~~~~~ldiGGG 239 (431)
.+.+.|.+.++....+ .+.+.+.|. -.+|++|=|
T Consensus 463 l~a~YWvr~LR~~V~f~~vdwv~aL~~~G~-t~fLElGP~ 501 (2060)
T 2uva_G 463 LGDEDIIPELVRMITYDPVNWETATVFPDA-THIVDFGPG 501 (2060)
T ss_dssp SSSCCSHHHHHHHHHTSCBCHHHHTCCSSC-SEEEECSSS
T ss_pred CCHHHHHHHHHHEEEECCCCHHHHHHHCCC-CEEEEECCC
T ss_conf 687889999863178524669999973899-889997968
No 83
>2w3s_B Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 1jrp_B* 2w3r_B* 1jro_B* 2w54_B* 2w55_B*
Probab=37.12 E-value=18 Score=15.01 Aligned_cols=12 Identities=17% Similarity=0.174 Sum_probs=6.4
Q ss_pred CCCEEECCCCCC
Q ss_conf 742200553000
Q gi|254780371|r 299 KTFVILDVAMND 310 (431)
Q Consensus 299 ~~~~~vD~g~~~ 310 (431)
+-++..|.|.-.
T Consensus 644 r~~~v~D~G~vi 655 (777)
T 2w3s_B 644 RTDILHDAGASL 655 (777)
T ss_dssp EEEEEEECBSCS
T ss_pred EEEEEEECCCCC
T ss_conf 999999588256
No 84
>2f9h_A PTS system, IIA component; alpha-beta structure, beta-barrel, dimer, structural genomics, PSI, protein structure initiative; 1.57A {Enterococcus faecalis V583} SCOP: b.161.1.1
Probab=36.89 E-value=18 Score=14.99 Aligned_cols=29 Identities=10% Similarity=0.013 Sum_probs=21.2
Q ss_pred CCCCCEEEEEEECCCCCCCCEEEEECCCC
Q ss_conf 05666656210056688888999967970
Q gi|254780371|r 345 CETGDFIALNRKIALPRPGDLLYIEKTGA 373 (431)
Q Consensus 345 C~~~D~l~~~~~lp~l~~GD~l~i~~~GA 373 (431)
|.++.+..+...+|.++.||.|-|.--||
T Consensus 101 ~LPG~I~v~~~~~P~i~vG~~I~~i~~~~ 129 (129)
T 2f9h_A 101 VIRNGVYLTPHQLPKITIGTTIDYLVNGA 129 (129)
T ss_dssp SCTTEEEEESCSCCCCCTTCEEEEEC---
T ss_pred CCCCEEEECCCCCCCCCCCCEEEEEECCC
T ss_conf 78986998878899788999999986689
No 85
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=36.33 E-value=18 Score=14.93 Aligned_cols=27 Identities=15% Similarity=0.186 Sum_probs=11.0
Q ss_pred CCCCHHHHHHHHHH---CCCCCCEEEEEEE
Q ss_conf 32202467687741---1334421589987
Q gi|254780371|r 124 VESESELKTLNQRA---VSLGKKAPIAFRV 150 (431)
Q Consensus 124 vDs~~el~~l~~~a---~~~~~~~~I~lRi 150 (431)
+.+.+++..+...+ ...+++.+|-|-+
T Consensus 139 ~~~~~~~~~~~~~a~~~a~~~~~GPv~l~i 168 (573)
T 2iht_A 139 LQRPHEITDLVDSAVNAAMTEPVGPSFISL 168 (573)
T ss_dssp CCSGGGHHHHHHHHHHHHTBSSCCCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 799999999999999999547887523787
No 86
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, degradation of homoprotocatechuate, class II aldolase; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=35.22 E-value=19 Score=14.81 Aligned_cols=91 Identities=13% Similarity=0.134 Sum_probs=55.7
Q ss_pred HHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEE-------ECHHHHHHHHHC----CCCCCCEEECCCCCCCHHHH
Q ss_conf 9986144797899964107999999999973992898-------689998652212----57843124447754201244
Q gi|254780371|r 44 FSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDI-------VSEGELRRALAA----PVPAERIVFSGVGKTIDEID 112 (431)
Q Consensus 44 l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv-------~S~~El~~al~~----G~~~~~Ii~~g~~k~~~~l~ 112 (431)
||+.+..-...+-.-++ -++|.+.+.+...|+-+-+ .|..++...+.+ |..+ + .--|..++..+.
T Consensus 9 lk~kL~~g~~~~G~~~~-~~sp~~~e~l~~~G~Dfv~iD~EHg~~~~~~~~~~i~a~~~~g~~~--~-vRvp~~~~~~i~ 84 (267)
T 2vws_A 9 FKERLRKGEVQIGLWLS-STTAYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAVAPYASQP--V-IRPVEGSKPLIK 84 (267)
T ss_dssp HHHHHHTTCCEEEEEEC-SCCHHHHHHHHTTCCSEEEEETTTSCCCHHHHHHHHHHHTTSSSEE--E-EECSSCCHHHHH
T ss_pred HHHHHHCCCCEEEEEEC-CCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCC--E-EEECCCCHHHHH
T ss_conf 99999879987998878-9997999999837989999816689888999999998861469974--5-871478479999
Q ss_pred HHHHCCCCCC---CCCCCHHHHHHHHHHC
Q ss_conf 4420687233---3322024676877411
Q gi|254780371|r 113 LALQSGIYCF---NVESESELKTLNQRAV 138 (431)
Q Consensus 113 ~ai~~gv~~i---~vDs~~el~~l~~~a~ 138 (431)
.+++.|+.-| .|+|.+|.+.+.+.++
T Consensus 85 r~LD~Ga~GIivP~v~s~eea~~~v~~~r 113 (267)
T 2vws_A 85 QVLDIGAQTLLIPMVDTAEQARQVVSATR 113 (267)
T ss_dssp HHHHTTCCEEEECCCCSHHHHHHHHHHTS
T ss_pred HHHHCCCCEEEECCCCCHHHHHHHHHHHC
T ss_conf 99838998899899499999999999860
No 87
>1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel, RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP: c.6.3.2 PDB: 2czv_A*
Probab=34.86 E-value=19 Score=14.78 Aligned_cols=60 Identities=7% Similarity=0.109 Sum_probs=39.6
Q ss_pred EEEECCCCHHHHHHHCCCCE---EEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHC
Q ss_conf 58987842999999749978---997799999999999986144797899964107999999999973
Q gi|254780371|r 10 SLHAENVSLEKLAHVVQTPF---YCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHL 74 (431)
Q Consensus 10 ~l~i~~~~l~~La~~~gTP~---yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~ 74 (431)
+|-+..-...+|++++--++ +.++.....+.++++++.... ..+ .=++.+|..++-+.+.
T Consensus 11 ~~~~~~~e~~~~~~~~~d~v~~~~~~~~~~~~e~~~e~~~~y~~--~~i---~l~~~~p~~~~~~v~~ 73 (212)
T 1v77_A 11 EMDIRDKEAYELAKEWFDEVVVSIKFNEEVDKEKLREARKEYGK--VAI---LLSNPKPSLVRDTVQK 73 (212)
T ss_dssp EEEECSHHHHHHHHHHCSEEEEEEEESSCCCHHHHHHHHHHHSC--EEE---EEESCCHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCC--EEE---EEECCCHHHHHHHHHH
T ss_conf 98742104789997447763798633850108999999874272--389---9952998999999986
No 88
>1n62_B Carbon monoxide dehydrogenase large chain; CODH, copper, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans OM5} SCOP: d.41.1.1 d.133.1.1 PDB: 1n5w_B* 1n61_B* 1n60_B* 1n63_B* 1zxi_B*
Probab=34.62 E-value=20 Score=14.75 Aligned_cols=14 Identities=36% Similarity=0.762 Sum_probs=7.3
Q ss_pred CCCEEEECCCCCCC
Q ss_conf 65268806873000
Q gi|254780371|r 230 NIQHIDVGGGLGIA 243 (431)
Q Consensus 230 ~~~~ldiGGGf~i~ 243 (431)
.+..-.+|||||..
T Consensus 261 rV~~~~vGGgFG~K 274 (809)
T 1n62_B 261 HVIAPDIGGGFGNK 274 (809)
T ss_dssp EEECCBCSCCTTTT
T ss_pred EEEECCCCCCCCCC
T ss_conf 99984457767666
No 89
>1n82_A Xylanase, intra-cellular xylanase; hydrolase; 1.45A {Geobacillus stearothermophilus} SCOP: c.1.8.3 PDB: 2q8x_A*
Probab=34.44 E-value=20 Score=14.73 Aligned_cols=34 Identities=9% Similarity=0.063 Sum_probs=15.9
Q ss_pred HHHHHHHHHC-CCCCHHHHHHHHHHCCCCCHHHHH
Q ss_conf 3457776415-632200233556415644204899
Q gi|254780371|r 179 HSLYAYASTL-PGVKISGVDMHIGSQIDQIESFHK 212 (431)
Q Consensus 179 ~~~~~~~~~~-~~l~l~GlH~H~GS~~~~~~~~~~ 212 (431)
.++++.+.+. ..++.+|+|.|.+.+..+.+...+
T Consensus 191 ~~~i~~l~~~g~~iDgiG~q~H~~~~~~~~~~i~~ 225 (331)
T 1n82_A 191 FALVKSLRDKGIPIHGIGMQAHWSLTRPSLDEIRA 225 (331)
T ss_dssp HHHHHHHHHTTCCCCEEEECCEEESSSSCHHHHHH
T ss_pred HHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHH
T ss_conf 99999999689960268850136667779999999
No 90
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, biotin enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=33.96 E-value=20 Score=14.68 Aligned_cols=30 Identities=10% Similarity=0.015 Sum_probs=20.8
Q ss_pred CCCCCCHHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf 8711113457776415632200233556415
Q gi|254780371|r 173 IPIHQIHSLYAYASTLPGVKISGVDMHIGSQ 203 (431)
Q Consensus 173 i~~~~~~~~~~~~~~~~~l~l~GlH~H~GS~ 203 (431)
+.++++.++++.+++...+. .++|+|--++
T Consensus 184 ~~P~~v~~lv~~lk~~~~~~-i~~H~Hnt~G 213 (464)
T 2nx9_A 184 LTPYAAEELVSTLKKQVDVE-LHLHCHSTAG 213 (464)
T ss_dssp CCHHHHHHHHHHHHHHCCSC-EEEEECCTTS
T ss_pred CCHHHHHHHHHHHHHHCCCC-EEEEECCCCC
T ss_conf 68789999999998627876-4888689986
No 91
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone, THDP, metal, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=33.91 E-value=20 Score=14.68 Aligned_cols=34 Identities=12% Similarity=-0.139 Sum_probs=18.6
Q ss_pred CEEEEECCCCHHHHHHC--CCCCCCCCEEEEE-ECCE
Q ss_conf 89999679702333402--7788986659999-8896
Q gi|254780371|r 364 DLLYIEKTGAYGAVQSG--TYNSRLLIPEIMV-NGSQ 397 (431)
Q Consensus 364 D~l~i~~~GAY~~s~~s--~fn~~p~p~~v~v-~~g~ 397 (431)
..+++..=|++.|++.. +.-.+-.|..|+| +|+.
T Consensus 435 ~vv~i~GDGsf~~~~~eL~Ta~r~~lpi~vvV~NN~g 471 (556)
T 3hww_A 435 PTLAIVGDLSALYDLNALALLRQVSAPLVLIVVNNNG 471 (556)
T ss_dssp CEEEEEEHHHHHHTGGGHHHHTTCSSCEEEEEEESCC
T ss_pred CCEEEECCHHHHCCHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 7514856636642679999999849695899997997
No 92
>3by5_A Cobalamin biosynthesis protein; structural genomics, unknown function, uncharacterized protein, protein structure initiative; 2.52A {Agrobacterium tumefaciens str} SCOP: c.151.1.1
Probab=33.69 E-value=20 Score=14.65 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=22.9
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECHHHHHHH
Q ss_conf 4107999999999973992898689998652
Q gi|254780371|r 59 LKANSNQAVIKTLAHLGSGLDIVSEGELRRA 89 (431)
Q Consensus 59 vKaN~~~~il~~l~~~G~g~dv~S~~El~~a 89 (431)
.|++ .+.++++..+.|+.+...|..||...
T Consensus 49 ~K~d-E~gL~~lA~~lg~pl~~~~~eeL~~v 78 (155)
T 3by5_A 49 LKAD-EAGLAEAAKGLSLSLEIVAQERLEAV 78 (155)
T ss_dssp CCSC-CHHHHHHHHHTTCCEEECCHHHHHHH
T ss_pred HHCC-CHHHHHHHHHHCCCEEEECHHHHHHH
T ss_conf 6457-98999999980997798389999743
No 93
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJM; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=33.57 E-value=20 Score=14.64 Aligned_cols=18 Identities=11% Similarity=0.469 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHCC
Q ss_conf 899999999887653102
Q gi|254780371|r 210 FHKAFKLLRDLTQQLRSN 227 (431)
Q Consensus 210 ~~~~~~~~~~~~~~l~~~ 227 (431)
+..-++.+.++.+.+++.
T Consensus 190 ~enR~Rf~~Eii~avr~~ 207 (338)
T 1z41_A 190 PENRYRFLREIIDEVKQV 207 (338)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 778788999999999998
No 94
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis W83}
Probab=32.86 E-value=7 Score=17.78 Aligned_cols=44 Identities=18% Similarity=0.069 Sum_probs=25.2
Q ss_pred EEECCCCCCCHHHHHHHHCCCCCCC-----CCCCHHHHHHHHHHCCCCC
Q ss_conf 2444775420124444206872333-----3220246768774113344
Q gi|254780371|r 99 IVFSGVGKTIDEIDLALQSGIYCFN-----VESESELKTLNQRAVSLGK 142 (431)
Q Consensus 99 Ii~~g~~k~~~~l~~ai~~gv~~i~-----vDs~~el~~l~~~a~~~~~ 142 (431)
|+++++.-..+.+..+++.|+..+. -++.++.+.+.+.|++.+.
T Consensus 70 i~~t~~~~~~~~~~~~l~~g~~vv~~~~~~~~~~e~~~~l~~aa~~~g~ 118 (304)
T 3bio_A 70 LVCSPSREVERTALEILKKGICTADSFDIHDGILALRRSLGDAAGKSGA 118 (304)
T ss_dssp EECSCHHHHHHHHHHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHTC
T ss_pred EEECCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 9907954479999999983897798368878899999999999998498
No 95
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=32.75 E-value=21 Score=14.55 Aligned_cols=43 Identities=16% Similarity=0.223 Sum_probs=18.1
Q ss_pred CCEEEEECCCCHHHHHHC--CCCCCCCCEEEEE-ECCEEEEEEECC
Q ss_conf 889999679702333402--7788986659999-889689998248
Q gi|254780371|r 363 GDLLYIEKTGAYGAVQSG--TYNSRLLIPEIMV-NGSQFHIIRPRM 405 (431)
Q Consensus 363 GD~l~i~~~GAY~~s~~s--~fn~~p~p~~v~v-~~g~~~~ir~re 405 (431)
...++|..=|++.+++.. +......|..++| +|+....++..+
T Consensus 425 ~~vi~i~GDgsf~~~~~eL~t~~~~~lpi~iiV~NN~~~g~~~~~~ 470 (549)
T 3eya_A 425 RQVVAMCGDGGFSMLMGDFLSVVQMKLPVKIVVFNNSVLGFVAMEM 470 (549)
T ss_dssp SCEEEEEEHHHHHHTGGGHHHHHHTTCCCEEEEEECSBCCCC----
T ss_pred CEEEEEECCCHHHCCHHHHHHHHHHCCCEEEEEEECCCCCHHHHHH
T ss_conf 8489997370552569999999996869299999799640887887
No 96
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Probab=32.02 E-value=22 Score=14.47 Aligned_cols=29 Identities=14% Similarity=0.008 Sum_probs=15.5
Q ss_pred CCEEEECHHHHHHHHHCCCCC-CCEEECCCC
Q ss_conf 928986899986522125784-312444775
Q gi|254780371|r 76 SGLDIVSEGELRRALAAPVPA-ERIVFSGVG 105 (431)
Q Consensus 76 ~g~dv~S~~El~~al~~G~~~-~~Ii~~g~~ 105 (431)
.|.-|-|..|+..|.++|.++ +-|.+ ||.
T Consensus 111 IG~S~h~~~e~~~a~~~~~~~aDYi~~-gpv 140 (540)
T 3nl6_A 111 IGWSVGFPEEVDELSKMGPDMVDYIGV-GTL 140 (540)
T ss_dssp EEEEECSHHHHHHHHHTCC--CCEEEE-SCC
T ss_pred EEEECCCHHHHHHHHHCCCCCCCEEEE-CCC
T ss_conf 999679999999999639899999998-994
No 97
>3nrz_C Xanthine dehydrogenase/oxidase; xanthine oxidase, hypoxanthine, substrate orientation, hydro oxidoreductase; HET: FAD MTE HPA; 1.80A {Bos taurus} PDB: 3eub_C* 3b9j_C* 1fiq_C* 3etr_C* 3ns1_C*
Probab=31.91 E-value=22 Score=14.46 Aligned_cols=10 Identities=30% Similarity=0.504 Sum_probs=5.0
Q ss_pred CCEEECCCCC
Q ss_conf 4220055300
Q gi|254780371|r 300 TFVILDVAMN 309 (431)
Q Consensus 300 ~~~~vD~g~~ 309 (431)
-++..|.|.-
T Consensus 606 ~~~v~D~G~v 615 (756)
T 3nrz_C 606 TDIVMDVGSS 615 (756)
T ss_dssp EEEEEECBSC
T ss_pred EEEEEECCCC
T ss_conf 9999938814
No 98
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg, hyperthermophIle; HET: PLP; 2.33A {Pyrococcus furiosus dsm 3638} SCOP: c.67.1.1
Probab=31.84 E-value=12 Score=16.28 Aligned_cols=86 Identities=14% Similarity=0.196 Sum_probs=34.6
Q ss_pred HHHHHHCCC-CCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCH------HHHHHHHHHCCCCCCEEEEEEEECCCCCCC
Q ss_conf 865221257-8431244477542012444420687233332202------467687741133442158998723778674
Q gi|254780371|r 86 LRRALAAPV-PAERIVFSGVGKTIDEIDLALQSGIYCFNVESES------ELKTLNQRAVSLGKKAPIAFRVNPDINANT 158 (431)
Q Consensus 86 l~~al~~G~-~~~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~------el~~l~~~a~~~~~~~~I~lRinp~~~~~~ 158 (431)
+.+++.+-. +++.++...|.-+. ....+...|...+.+.... .++.+.+. ...+.++.+=.||+=.
T Consensus 114 l~~~~~~~~~~Gd~Vl~~~P~Y~~-y~~~~~~~g~~~v~~~~~~~~~~~~~~e~l~~~---~~~~~~~~~l~~P~NP--- 186 (406)
T 1xi9_A 114 LQLIFGALLDPGDEILVPGPSYPP-YTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKK---ITDRTKAIAVINPNNP--- 186 (406)
T ss_dssp HHHHHHHHCCTTCEEEEEESCCHH-HHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHH---CCTTEEEEEEESSCTT---
T ss_pred HHHHHHHHHCCCCEEEECCCCCCH-HHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHH---CCCCCCEEEEECCCCC---
T ss_conf 887777863499989980796630-377898739879997343224778799999986---5447828999289898---
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 433322334445688711113457776415
Q gi|254780371|r 159 HKKISTGKKEDKFGIPIHQIHSLYAYASTL 188 (431)
Q Consensus 159 ~~~~~tg~~~sKFGi~~~~~~~~~~~~~~~ 188 (431)
||. =++.+++.++++.++++
T Consensus 187 -----TG~-----~~s~~~l~~l~~~a~~~ 206 (406)
T 1xi9_A 187 -----TGA-----LYDKKTLEEILNIAGEY 206 (406)
T ss_dssp -----TCC-----CCCHHHHHHHHHHHHHH
T ss_pred -----CCH-----HHHHHHHHHHHHHHHHC
T ss_conf -----743-----42288999999764414
No 99
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=31.80 E-value=22 Score=14.45 Aligned_cols=19 Identities=0% Similarity=-0.277 Sum_probs=10.1
Q ss_pred HHHHHHHCCCCCEEEEEEC
Q ss_conf 5565421024530344101
Q gi|254780371|r 258 SLIHQYFGNLQCKIILEPG 276 (431)
Q Consensus 258 ~~i~~~~~~~~~~l~~EPG 276 (431)
+.+.+..++.++++.+|+=
T Consensus 147 ~~~~~~a~~~Gv~~~~E~~ 165 (303)
T 3l23_A 147 NQASDVIKAEGIATGFGYH 165 (303)
T ss_dssp HHHHHHHHHTTCTTCEEEE
T ss_pred HHHHHHHHHCCCEEEEEEC
T ss_conf 9999999867985999725
No 100
>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*
Probab=31.78 E-value=22 Score=14.45 Aligned_cols=23 Identities=9% Similarity=0.089 Sum_probs=10.9
Q ss_pred CHHHHHHHHHHCCCCCCEEEEEEEE
Q ss_conf 0246768774113344215899872
Q gi|254780371|r 127 ESELKTLNQRAVSLGKKAPIAFRVN 151 (431)
Q Consensus 127 ~~el~~l~~~a~~~~~~~~I~lRin 151 (431)
+..++++.+...+.+ .++++-++
T Consensus 80 i~~lk~l~d~vh~~G--~~~~~QL~ 102 (365)
T 2gou_A 80 IAGWRIVTEAVHAKG--CAIFAQLW 102 (365)
T ss_dssp HHHHHHHHHHHHHHS--CEEEEEEE
T ss_pred HHHHHHHHHHHHHCC--CCEEECCC
T ss_conf 578779999987479--81784332
No 101
>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics, PSI-2, protein structure initiative; 2.10A {Aquifex aeolicus} PDB: 2yy6_A
Probab=31.61 E-value=22 Score=14.43 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=10.7
Q ss_pred CCCCHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 1111345777641563220023355
Q gi|254780371|r 175 IHQIHSLYAYASTLPGVKISGVDMH 199 (431)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~l~GlH~H 199 (431)
.+.+.++.+.+..+ -+++.|-|-|
T Consensus 198 i~~l~dL~~~l~~~-~~~~~~~~~~ 221 (222)
T 2nyv_A 198 LSRPSDLVKLMDNH-IVEFEGHHHH 221 (222)
T ss_dssp ESSTTHHHHHHHTT-SSEECC----
T ss_pred ECCHHHHHHHHHHH-HHHHCCCCCC
T ss_conf 99999999999875-4762687678
No 102
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=31.17 E-value=22 Score=14.38 Aligned_cols=71 Identities=10% Similarity=0.056 Sum_probs=46.4
Q ss_pred CCCCEEECCEEEECCC---CHHHHHHHCC-C-CEEEEEHHHHHHH--HHHHHHHCCC--CCCEEEEEEECCCCHHHHHHH
Q ss_conf 9871666885898784---2999999749-9-7899779999999--9999986144--797899964107999999999
Q gi|254780371|r 1 MSAFKYFEGSLHAENV---SLEKLAHVVQ-T-PFYCYSTTAIEKN--YLTFSNAFDG--MDTMVCYALKANSNQAVIKTL 71 (431)
Q Consensus 1 m~~~~~~~~~l~i~~~---~l~~La~~~g-T-P~yV~d~~~i~~n--~~~l~~a~~~--~~~~i~yAvKaN~~~~il~~l 71 (431)
|.++.+.+...+++.- .+.+.++++| . ++.|.+.. ++++ +.++++.+.. ..+.+|.-++.||....+..+
T Consensus 2 m~~~~~~~~~~~fG~g~~~~l~~~~~~~G~k~vlvv~~~~-~~~~g~~~~i~~~L~~~gi~~~vf~~v~~~pt~~~v~~~ 80 (386)
T 1rrm_A 2 MANRMILNETAWFGRGAVGALTDEVKRRGYQKALIVTDKT-LVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEG 80 (386)
T ss_dssp CCEEEECCSEEEESTTGGGGHHHHHHHHTCCEEEEECBHH-HHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHH
T ss_pred CCCEEECCCCCEECCCHHHHHHHHHHHCCCCEEEEEECCC-HHHCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHH
T ss_conf 9735656998469876999999999976998799998977-565827999999998759839998784799799999998
Q ss_pred H
Q ss_conf 9
Q gi|254780371|r 72 A 72 (431)
Q Consensus 72 ~ 72 (431)
.
T Consensus 81 ~ 81 (386)
T 1rrm_A 81 L 81 (386)
T ss_dssp H
T ss_pred H
T ss_conf 6
No 103
>2pk8_A Uncharacterized protein PF0899; structural genomics, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=30.19 E-value=23 Score=14.27 Aligned_cols=57 Identities=16% Similarity=0.196 Sum_probs=36.9
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 35564156442048999999998876531026665268806873000266545531145655565421024
Q gi|254780371|r 197 DMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQYFGNL 267 (431)
Q Consensus 197 H~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~~~~~~ 267 (431)
|-|.||.. -....+.+..+-+.+.+++..|+.++++=+|-+| ++-+-+.+++.+...
T Consensus 4 ~~~~~s~~--rgdliriL~~iEekinELk~dG~ePDiiL~G~ea------------yef~~~~vk~e~g~e 60 (103)
T 2pk8_A 4 HHHHGSST--RGDLIRILGEIEEKMNELKMDGFNPDIILFGREA------------YNFLSNLLKKEMEEE 60 (103)
T ss_dssp ------CH--HHHHHHHHHHHHHHHHHHHHTTCCCCEEEECHHH------------HHHHHHHHHHHHTCC
T ss_pred CCCCCCCC--CHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHH------------HHHHHHHHHHHHCCC
T ss_conf 44467543--1139999999999999998658998779985899------------999999998873576
No 104
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=29.84 E-value=23 Score=14.23 Aligned_cols=63 Identities=16% Similarity=0.154 Sum_probs=37.5
Q ss_pred CCCCCCCCEEEEEEEEEECCCCCEEEEE-EECCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECC
Q ss_conf 2346777615899981000566665621-005668888899996797023334027788986659999889
Q gi|254780371|r 327 VNPAGDRLHIHADIVGPICETGDFIALN-RKIALPRPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMVNGS 396 (431)
Q Consensus 327 ~~~~~~~~~~~~~i~G~~C~~~D~l~~~-~~lp~l~~GD~l~i~~~GAY~~s~~s~fn~~p~p~~v~v~~g 396 (431)
.+-.......+|.+-|+- |+. ++-+ .--...++||.|+|..-+-+....+.+| +|..|++++.
T Consensus 22 ~Nv~NG~Rf~TYvI~g~~--sg~-I~lNGaAAr~~~~GD~vII~sy~~~~~~e~~~~----~P~vv~vd~~ 85 (97)
T 1uhe_A 22 VDVNNGERFSTYVILGKK--RGE-ICVNGAAARKVAIGDVVIILAYASMNEDEINAH----KPSIVLVDEK 85 (97)
T ss_dssp EETTTCCEEEEECEEECS--TTC-EEEEGGGGGGCCTTCEEEEEEEEEECHHHHHHC----CCEEEEECTT
T ss_pred EECCCCCEEEEEEEECCC--CCE-EEECCHHHHCCCCCCEEEEEECCCCCHHHHHCC----CCEEEEECCC
T ss_conf 999899588989983278--887-987878983479999999998764798898348----8779998999
No 105
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=28.80 E-value=24 Score=14.11 Aligned_cols=29 Identities=14% Similarity=0.066 Sum_probs=13.9
Q ss_pred CCCCCCHHHHHHHHHHC---CCCCCEEEEEEE
Q ss_conf 33322024676877411---334421589987
Q gi|254780371|r 122 FNVESESELKTLNQRAV---SLGKKAPIAFRV 150 (431)
Q Consensus 122 i~vDs~~el~~l~~~a~---~~~~~~~I~lRi 150 (431)
..+.+.+++....+.|- ..+++.+|-|-+
T Consensus 131 ~~v~~~~~i~~~l~~A~~~A~~~~~GPV~i~i 162 (589)
T 2pgn_A 131 QRVERLDKVGEAIHEAFRVAEGHPAGPAYVDI 162 (589)
T ss_dssp EECCSGGGHHHHHHHHHHHHTSSSCCEEEEEE
T ss_pred EECCCHHHHHHHHHHHHHHHHCCCCCCEEECC
T ss_conf 10367888999999999998458987543047
No 106
>2cev_A Protein (arginase); enzyme, hydrolase, arginine hydrolysis, nitrogen metabolism, manganese metalloenzyme; 2.15A {Bacillus caldovelox} SCOP: c.42.1.1 PDB: 1cev_A 3cev_A* 4cev_A 5cev_A*
Probab=28.41 E-value=25 Score=14.07 Aligned_cols=27 Identities=11% Similarity=0.081 Sum_probs=13.2
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCHHHHH
Q ss_conf 45688711113457776415632200233
Q gi|254780371|r 169 DKFGIPIHQIHSLYAYASTLPGVKISGVD 197 (431)
Q Consensus 169 sKFGi~~~~~~~~~~~~~~~~~l~l~GlH 197 (431)
+..|++..|+.++++.+.+.. +++|+.
T Consensus 242 ~pgGls~~e~~~~l~~~~~~~--~vvg~d 268 (299)
T 2cev_A 242 VIGGLTYRESHLAMEMLAEAQ--IITSAE 268 (299)
T ss_dssp CSSCBCHHHHHHHHHHHHHHT--CEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHCCC--CEEEEE
T ss_conf 899979999999999997469--989999
No 107
>1vbr_A Endo-1,4-beta-xylanase B; hydrolase; HET: XYP; 1.80A {Thermotoga maritima} SCOP: c.1.8.3 PDB: 1vbu_A
Probab=27.90 E-value=25 Score=14.01 Aligned_cols=16 Identities=38% Similarity=0.451 Sum_probs=12.3
Q ss_pred CCCCHHHHHHHCCCCE
Q ss_conf 7842999999749978
Q gi|254780371|r 14 ENVSLEKLAHVVQTPF 29 (431)
Q Consensus 14 ~~~~l~~La~~~gTP~ 29 (431)
+..+|++|++..|-++
T Consensus 2 ~~~~l~~~a~~~~~~~ 17 (328)
T 1vbr_A 2 QNVSLRELAEKLNIYI 17 (328)
T ss_dssp --CCHHHHHHHTTCEE
T ss_pred CCCCHHHHHHHCCCCE
T ss_conf 9778999998759937
No 108
>1ble_A Fructose permease; phosphotransferase, sugar transport; 2.90A {Bacillus subtilis} SCOP: c.38.1.1
Probab=27.61 E-value=25 Score=13.98 Aligned_cols=44 Identities=14% Similarity=0.220 Sum_probs=16.8
Q ss_pred CCCCEEEECHHHHHHHHHCC-CCCCCEEECCCCCCCHHHHHHHHCCC
Q ss_conf 39928986899986522125-78431244477542012444420687
Q gi|254780371|r 74 LGSGLDIVSEGELRRALAAP-VPAERIVFSGVGKTIDEIDLALQSGI 119 (431)
Q Consensus 74 ~G~g~dv~S~~El~~al~~G-~~~~~Ii~~g~~k~~~~l~~ai~~gv 119 (431)
.|..+.+.|..+....+..+ .+..++.. -+++++++..+++.|.
T Consensus 54 ~gvk~~i~sv~~a~~~l~~~~~~~~~v~v--l~~~~~d~~~l~~~g~ 98 (163)
T 1ble_A 54 SNVKASAVSVSKMAKAFHSPRYEGVTAML--LFENPSDIVSLIEAGV 98 (163)
T ss_dssp TTSEEEEECHHHHHHHHHCSTTTTCEEEE--EESSSHHHHHHHTTTC
T ss_pred CCCEEEEEEHHHHHHHHHCCCCCCCEEEE--EECCHHHHHHHHHCCC
T ss_conf 99779999999999998575556976999--9899999999997599
No 109
>3kts_A Glycerol uptake operon antiterminator regulatory protein; structural genomics, PSI-2, protein structure initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=27.43 E-value=26 Score=13.95 Aligned_cols=53 Identities=17% Similarity=0.243 Sum_probs=32.9
Q ss_pred CCCCCEEECCCCCCCHHHHHHHHCCCCCC--CCCCCHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 78431244477542012444420687233--3322024676877411334421589987
Q gi|254780371|r 94 VPAERIVFSGVGKTIDEIDLALQSGIYCF--NVESESELKTLNQRAVSLGKKAPIAFRV 150 (431)
Q Consensus 94 ~~~~~Ii~~g~~k~~~~l~~ai~~gv~~i--~vDs~~el~~l~~~a~~~~~~~~I~lRi 150 (431)
|....|+ ...|+.++|+.|++..+.++ ---++..|..+.+.+++.++. +.+-+
T Consensus 7 f~~~pVI--pAvr~~~~le~al~s~~~~iflL~g~I~~l~~iv~~~k~~gK~--vfVHi 61 (192)
T 3kts_A 7 FSNQSII--PAAHNQKDMEKILELDLTYMVMLETHVAQLKALVKYAQAGGKK--VLLHA 61 (192)
T ss_dssp CTTCCEE--EEESSSHHHHHHTTSSCCEEEECSEETTTHHHHHHHHHHTTCE--EEEEG
T ss_pred CCCCCEE--EEECCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCE--EEEEE
T ss_conf 5689778--8837889999997589989999537187799999999987998--99985
No 110
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=27.32 E-value=26 Score=13.94 Aligned_cols=28 Identities=25% Similarity=0.203 Sum_probs=10.9
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 3322334445688711113457776415
Q gi|254780371|r 161 KISTGKKEDKFGIPIHQIHSLYAYASTL 188 (431)
Q Consensus 161 ~~~tg~~~sKFGi~~~~~~~~~~~~~~~ 188 (431)
+++||..+|+.-=-+-....+++.+++.
T Consensus 130 kISTGp~Ss~~~~~iV~vetAiaml~dm 157 (249)
T 3m0z_A 130 KISTGPLSSGAADGIVPLETAIALLKDM 157 (249)
T ss_dssp ECCCSTTGGGSSCCEEEHHHHHHHHHHT
T ss_pred EECCCCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf 9556766555887623199999999974
No 111
>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.62 E-value=26 Score=13.86 Aligned_cols=59 Identities=15% Similarity=0.283 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 442048999999998876531026665268806873000266545531145655565421024530344
Q gi|254780371|r 205 DQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQYFGNLQCKIIL 273 (431)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 273 (431)
.+.+...++++.+++.+++..-.-+.+.. ||-|.+ ..+|++.++.|.+.+.+.++++++
T Consensus 88 ~~~~~l~~~l~~~l~~a~~~~~~sIa~P~--iG~G~~--------g~~~~~v~~ii~~~~~~~~i~v~v 146 (149)
T 2eee_A 88 PTYENLQKSLEAMKSHCLKNGVTDLSMPR--IGCGLD--------RLQWENVSAMIEEVFEATDIKITV 146 (149)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCCEEECCC--CCCTTT--------TCCHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEECC--CCCCCC--------CCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 88999999999999999982996698553--267677--------989999999999985679955999
No 112
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=26.48 E-value=11 Score=16.52 Aligned_cols=13 Identities=23% Similarity=0.414 Sum_probs=5.3
Q ss_pred HCCCCCCCEEECC
Q ss_conf 1257843124447
Q gi|254780371|r 91 AAPVPAERIVFSG 103 (431)
Q Consensus 91 ~~G~~~~~Ii~~g 103 (431)
+.|++.+++++..
T Consensus 77 ~lGvd~~~ll~~~ 89 (333)
T 3io5_A 77 SMGVDPERVIHTP 89 (333)
T ss_dssp HTTCCGGGEEEEE
T ss_pred HCCCCCCCCEEEC
T ss_conf 8098810055752
No 113
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis, plasmid; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=26.09 E-value=17 Score=15.19 Aligned_cols=31 Identities=19% Similarity=0.160 Sum_probs=24.0
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 4775420124444206872333322024676
Q gi|254780371|r 102 SGVGKTIDEIDLALQSGIYCFNVESESELKT 132 (431)
Q Consensus 102 ~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~ 132 (431)
|+.+||.-.++.|-+.|..+||+||..=.+-
T Consensus 10 TasGKS~lAi~LA~~~~~eIIs~DS~QvY~~ 40 (253)
T 2ze6_A 10 TCSGKTDMAIQIAQETGWPVVALDRVQCCPQ 40 (253)
T ss_dssp TTSSHHHHHHHHHHHHCCCEEECCSGGGCGG
T ss_pred CCCCHHHHHHHHHHHCCCEEEECCHHHHCCC
T ss_conf 7527899999999986994996134742599
No 114
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=25.62 E-value=28 Score=13.74 Aligned_cols=30 Identities=17% Similarity=0.309 Sum_probs=14.8
Q ss_pred CCCCCCHHHHHHHHHHCC---CCCCEEEEEEEE
Q ss_conf 333220246768774113---344215899872
Q gi|254780371|r 122 FNVESESELKTLNQRAVS---LGKKAPIAFRVN 151 (431)
Q Consensus 122 i~vDs~~el~~l~~~a~~---~~~~~~I~lRin 151 (431)
..+.+.+++....+.|-+ .++..+|-|.+.
T Consensus 138 ~~v~~~~~i~~~l~~A~~~a~~~~~GPV~l~ip 170 (590)
T 1ybh_A 138 YLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVP 170 (590)
T ss_dssp EECCCGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred EECCCHHHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 876999999999999999985289944999806
No 115
>3c6c_A 3-keto-5-aminohexanoate cleavage enzyme; YP_293392.1, prokaryotic protein of unknown function (DUF849), structural genomics; HET: MSE; 1.72A {Ralstonia eutropha JMP134}
Probab=25.39 E-value=21 Score=14.55 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=26.3
Q ss_pred CCCCCCHHHHHHHHHCCCCCHHHHHHH-----HHHCCCCCHHHHHHHHHHHH
Q ss_conf 871111345777641563220023355-----64156442048999999998
Q gi|254780371|r 173 IPIHQIHSLYAYASTLPGVKISGVDMH-----IGSQIDQIESFHKAFKLLRD 219 (431)
Q Consensus 173 i~~~~~~~~~~~~~~~~~l~l~GlH~H-----~GS~~~~~~~~~~~~~~~~~ 219 (431)
++++|+.+-...+.+ .|-. -+|+| -|++..|++.|.+.++.+.+
T Consensus 45 ~TpeEia~~A~~c~~-AGAs--ivHlHvRd~~dG~~s~D~~~y~e~i~~Ir~ 93 (316)
T 3c6c_A 45 ITPAQIADACVEAAK-AGAS--VAHIHVRDPKTGGGSRDPVLFKEVVDRVRS 93 (316)
T ss_dssp CSHHHHHHHHHHHHH-HTCS--EEEECEECTTTCCEECCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHH-HCCC--EEEEEECCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 999999999999998-2753--899764578889857999999999999997
No 116
>2w6k_A COBE; biosynthetic protein, cobalamin, complete proteome, vitamin B12; 1.70A {Pseudomonas aeruginosa} SCOP: c.151.1.1 PDB: 2bsn_A 2w6l_A
Probab=25.01 E-value=28 Score=13.66 Aligned_cols=27 Identities=7% Similarity=0.083 Sum_probs=19.2
Q ss_pred CCHHHHHHHHHCCCCEEEECHHHHHHH
Q ss_conf 999999999973992898689998652
Q gi|254780371|r 63 SNQAVIKTLAHLGSGLDIVSEGELRRA 89 (431)
Q Consensus 63 ~~~~il~~l~~~G~g~dv~S~~El~~a 89 (431)
..+.+++.....|+-+-..|..||...
T Consensus 56 dE~gl~~~A~~l~~p~~~~~~e~L~~v 82 (145)
T 2w6k_A 56 DEPGLRQLATLLERPVHFLAPAVLHDY 82 (145)
T ss_dssp CCHHHHHHHHHHTSCEEEECHHHHHTT
T ss_pred CCHHHHHHHHHHCCCEEEECHHHHHHH
T ss_conf 989999999993998598689999745
No 117
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA- binding protein, DNA binding protein; HET: SAP; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=24.72 E-value=13 Score=15.88 Aligned_cols=54 Identities=30% Similarity=0.384 Sum_probs=27.7
Q ss_pred EEEECH--HHHHHHHH-CCCCCCCEE-ECCCC---CCCHHH---HHHHHCCCCCCCCCCCHHHH
Q ss_conf 898689--99865221-257843124-44775---420124---44420687233332202467
Q gi|254780371|r 78 LDIVSE--GELRRALA-APVPAERIV-FSGVG---KTIDEI---DLALQSGIYCFNVESESELK 131 (431)
Q Consensus 78 ~dv~S~--~El~~al~-~G~~~~~Ii-~~g~~---k~~~~l---~~ai~~gv~~i~vDs~~el~ 131 (431)
+++.|. -.|..+|. -|+|..+|+ +.||- ||.=-+ ..|.+.|...+-+|++.-++
T Consensus 52 i~~IsTGs~~LD~~Lg~GGlp~Gritei~G~~~sGKTtlal~~~~~aQk~gg~~~yiDtE~~~d 115 (366)
T 1xp8_A 52 VQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALD 115 (366)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred CCEECCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 6657678699999876899758849999889877789999999999962798699982335759
No 118
>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor}
Probab=24.58 E-value=29 Score=13.61 Aligned_cols=24 Identities=17% Similarity=-0.003 Sum_probs=13.3
Q ss_pred HHHHHCCCCCEEEEEECCEECCCC
Q ss_conf 654210245303441011120366
Q gi|254780371|r 260 IHQYFGNLQCKIILEPGRFLVADV 283 (431)
Q Consensus 260 i~~~~~~~~~~l~~EPGR~lva~a 283 (431)
+.+...+.++++.+|+-..-....
T Consensus 165 l~~~a~~~gv~l~~E~~~~~~~~~ 188 (340)
T 2zds_A 165 ILDVFDAEGVRFAHEVHPSEIAYD 188 (340)
T ss_dssp HHHHHHHHTCEEEEECCTTSSCCS
T ss_pred HHHHHHHHCCEEEEEECCCCCCCC
T ss_conf 999999869868997066434343
No 119
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=23.98 E-value=30 Score=13.54 Aligned_cols=39 Identities=8% Similarity=-0.007 Sum_probs=17.4
Q ss_pred CEEEEECCCCHHHHHHC--CCCCCCCCEEEEE-ECCEEEEEE
Q ss_conf 89999679702333402--7788986659999-889689998
Q gi|254780371|r 364 DLLYIEKTGAYGAVQSG--TYNSRLLIPEIMV-NGSQFHIIR 402 (431)
Q Consensus 364 D~l~i~~~GAY~~s~~s--~fn~~p~p~~v~v-~~g~~~~ir 402 (431)
-.++|..=|++.+++.. ..-....|..++| +|+.-.+++
T Consensus 474 ~vv~i~GDGsf~m~~~eL~Ta~r~~lpi~ivV~NN~gygi~~ 515 (604)
T 2x7j_A 474 PVTLVIGDLSFYHDLNGLLAAKKLGIPLTVILVNNDGGGIFS 515 (604)
T ss_dssp CEEEEEEHHHHHHTGGGGHHHHHHCCCEEEEEEECSSCGGGG
T ss_pred CEEEEECCHHHHCCHHHHHHHHHHCCCCEEEEEECCCCHHHH
T ss_conf 749998854763378999999983959389999799865874
No 120
>2uwf_A Endoxylanase, alkaline active endoxylanase; hydrolase, xylan degradation, xylanase structure, glycosidase, alkaliphilic; 2.10A {Bacillus halodurans} PDB: 2f8q_A 2fgl_A*
Probab=23.61 E-value=20 Score=14.63 Aligned_cols=55 Identities=18% Similarity=0.202 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHCC-CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC--CCCEEEEC
Q ss_conf 11134577764156-3220023355641564420489999999988765310266--65268806
Q gi|254780371|r 176 HQIHSLYAYASTLP-GVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGH--NIQHIDVG 237 (431)
Q Consensus 176 ~~~~~~~~~~~~~~-~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~--~~~~ldiG 237 (431)
+...++++.+++.. -+.-+|+|.|++.+..+.+...+.++. +...|. .+..+|+.
T Consensus 202 ~~~~~lv~~L~~~g~piDgIG~Q~H~~~~~~~~~~i~~~l~~-------~a~lGl~i~ITElDv~ 259 (356)
T 2uwf_A 202 DDLYNLVKDLLEQGVPIDGVGHQSHIQIGWPSIEDTRASFEK-------FTSLGLDNQVTELDMS 259 (356)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECCEEESSCSCHHHHHHHHHH-------HHTTTCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHH-------HHHCCCCCEEEEEEEE
T ss_conf 999999999997899743367742116799998999999999-------9974996126888520
No 121
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*
Probab=23.52 E-value=19 Score=14.91 Aligned_cols=63 Identities=8% Similarity=0.106 Sum_probs=31.4
Q ss_pred EEEECHHHHHHHHHCCCCCCCEEECCCCC-CCHHHHHHHHCCCCCCC-CCC----CHHHHHHHHHHCCCCCC
Q ss_conf 89868999865221257843124447754-20124444206872333-322----02467687741133442
Q gi|254780371|r 78 LDIVSEGELRRALAAPVPAERIVFSGVGK-TIDEIDLALQSGIYCFN-VES----ESELKTLNQRAVSLGKK 143 (431)
Q Consensus 78 ~dv~S~~El~~al~~G~~~~~Ii~~g~~k-~~~~l~~ai~~gv~~i~-vDs----~~el~~l~~~a~~~~~~ 143 (431)
..+.+..++..++. +.+-++.+.|.. ..+.+..+++.|+..+. .+. .+..+.+.+.|++.+..
T Consensus 44 ~~v~~~~d~~~~~~---~~Dvvii~tp~~~~~~~~~~~l~~G~~VV~~~~~~~~~~e~~~~l~~aA~~~g~~ 112 (320)
T 1f06_A 44 TPVFDVADVDKHAD---DVDVLFLCMGSATDIPEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAGNV 112 (320)
T ss_dssp SCEEEGGGGGGTTT---TCSEEEECSCTTTHHHHHHHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHTCE
T ss_pred CCCCCHHHHHHHCC---CCCEEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCE
T ss_conf 88645177997405---7999998789716899999999869999982887565878999999999973976
No 122
>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3- epimerase, D-tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}
Probab=23.42 E-value=30 Score=13.46 Aligned_cols=14 Identities=21% Similarity=0.093 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 48999999998876
Q gi|254780371|r 209 SFHKAFKLLRDLTQ 222 (431)
Q Consensus 209 ~~~~~~~~~~~~~~ 222 (431)
...++++.+.+.++
T Consensus 107 ~r~~~i~~~~~~i~ 120 (290)
T 2zvr_A 107 IRKKAIERVVKHTE 120 (290)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999999
No 123
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=23.39 E-value=17 Score=15.16 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=11.3
Q ss_pred HHHHHHHH-CCCCCCCEE-ECCCC
Q ss_conf 99865221-257843124-44775
Q gi|254780371|r 84 GELRRALA-APVPAERIV-FSGVG 105 (431)
Q Consensus 84 ~El~~al~-~G~~~~~Ii-~~g~~ 105 (431)
..|..++. -|+|..+|+ +.|+.
T Consensus 47 ~~lD~~lg~GG~p~Gritei~G~~ 70 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQE 70 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEEST
T ss_pred HHHHHHHCCCCCCCCEEEEEECCC
T ss_conf 899987578998688499997898
No 124
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*
Probab=23.35 E-value=30 Score=13.46 Aligned_cols=17 Identities=6% Similarity=0.268 Sum_probs=8.1
Q ss_pred CCCCCCCCCHHHHHHHH
Q ss_conf 56887111134577764
Q gi|254780371|r 170 KFGIPIHQIHSLYAYAS 186 (431)
Q Consensus 170 KFGi~~~~~~~~~~~~~ 186 (431)
.+|-+++++.++++.+.
T Consensus 153 ~~~~~~~~~~~l~~~v~ 169 (285)
T 1qtw_A 153 NLGFKFEHLAAIIDGVE 169 (285)
T ss_dssp BCCSSHHHHHHHHHHCS
T ss_pred CCCCCHHHHHHHHHHHC
T ss_conf 67789999999999862
No 125
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=22.32 E-value=32 Score=13.32 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=16.5
Q ss_pred HHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHH
Q ss_conf 5310266652688068730002665455311456
Q gi|254780371|r 223 QLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDY 256 (431)
Q Consensus 223 ~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~ 256 (431)
.+++.|..++++|+. .++.+....+.+++.+++
T Consensus 60 ~l~~~g~ev~iidL~-dlpl~~~~~~~~~~v~~l 92 (247)
T 2q62_A 60 LLEFFGAEVKVFDPS-GLPLPDAAPVSHPKVQEL 92 (247)
T ss_dssp HHHHTTCEEEECCCT-TCCCTTSSCTTSHHHHHH
T ss_pred HHHHCCCEEEEECCC-CCCCCCCCCCCCHHHHHH
T ss_conf 887679879997513-489875677788789999
No 126
>3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A*
Probab=22.27 E-value=32 Score=13.32 Aligned_cols=18 Identities=11% Similarity=0.099 Sum_probs=7.3
Q ss_pred CCCCCCHHHHHHHHHHCC
Q ss_conf 333220246768774113
Q gi|254780371|r 122 FNVESESELKTLNQRAVS 139 (431)
Q Consensus 122 i~vDs~~el~~l~~~a~~ 139 (431)
||+-|++.++.+.+.|.+
T Consensus 26 fNv~n~e~~~avi~AAee 43 (349)
T 3elf_A 26 INCTSSETVNAAIKGFAD 43 (349)
T ss_dssp EECCSHHHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHH
T ss_conf 776999999999999999
No 127
>2aeb_A Arginase 1; hydrolase, binuclear manganese cluster, boronic acid inhibitor, perfectly twinned crystal; HET: AB5; 1.29A {Homo sapiens} SCOP: c.42.1.1 PDB: 1wva_A* 2pha_A 2pho_A 2pll_A* 2zav_A 3dj8_A* 3f80_A* 3gmz_A 3gn0_A* 3kv2_A* 3lp4_A* 3lp7_A* 3mfv_A* 3mfw_A* 3mjl_A 1wvb_A* 3e6v_A* 3e6k_A* 1d3v_A* 1hq5_A* ...
Probab=21.99 E-value=32 Score=13.28 Aligned_cols=101 Identities=21% Similarity=0.230 Sum_probs=45.3
Q ss_pred CCCCCEEECCC-CCCCHHHHHHHHCCCCCCCCCCCHHH--HH-HHHHHCCC--CCCEEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 78431244477-54201244442068723333220246--76-87741133--442158998723778674433322334
Q gi|254780371|r 94 VPAERIVFSGV-GKTIDEIDLALQSGIYCFNVESESEL--KT-LNQRAVSL--GKKAPIAFRVNPDINANTHKKISTGKK 167 (431)
Q Consensus 94 ~~~~~Ii~~g~-~k~~~~l~~ai~~gv~~i~vDs~~el--~~-l~~~a~~~--~~~~~I~lRinp~~~~~~~~~~~tg~~ 167 (431)
++++++++-|. ...+++.+.+.+.++..+..+.+.+. .. +.+....+ ....+|.|=+..++--.... -.|| .
T Consensus 169 i~~~~~~~iG~R~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vyls~DiDvlDps~a-Pgv~-~ 246 (322)
T 2aeb_A 169 ISAKDIVYIGLRDVDPGEHYILKTLGIKYFSMTEVDRLGIGKVMEETLSYLLGRKKRPIHLSFDVDGLDPSFT-PATG-T 246 (322)
T ss_dssp BCGGGEEEEEECCCCHHHHHHHHHHTCEEEEHHHHHHHCHHHHHHHHHHHHHSSSCCCEEEEEEGGGBCTTTC-CSBS-S
T ss_pred CCHHHEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHC-CCCC-C
T ss_conf 6722647853456987899999874223411999986051889999999985368883799976264477448-9989-9
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCHHHHHH
Q ss_conf 4456887111134577764156322002335
Q gi|254780371|r 168 EDKFGIPIHQIHSLYAYASTLPGVKISGVDM 198 (431)
Q Consensus 168 ~sKFGi~~~~~~~~~~~~~~~~~l~l~GlH~ 198 (431)
.+..|++.+|+..+++.+.... ++.|+.+
T Consensus 247 p~pgGLs~~e~~~~l~~i~~~~--~v~g~Di 275 (322)
T 2aeb_A 247 PVVGGLTYREGLYITEEIYKTG--LLSGLDI 275 (322)
T ss_dssp CCSSCBCHHHHHHHHHHHHHHS--CEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHCCC--CEEEEEE
T ss_conf 9899839999999999986549--9899999
No 128
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=21.98 E-value=32 Score=13.28 Aligned_cols=51 Identities=10% Similarity=0.074 Sum_probs=25.0
Q ss_pred EECHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHCCCCCC-CCCCCHHHHHHH
Q ss_conf 8689998652212578431244477542012444420687233-332202467687
Q gi|254780371|r 80 IVSEGELRRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCF-NVESESELKTLN 134 (431)
Q Consensus 80 v~S~~El~~al~~G~~~~~Ii~~g~~k~~~~l~~ai~~gv~~i-~vDs~~el~~l~ 134 (431)
|.+..+++.|.++|.+ .+. .|+-+++-++.|.+.|+..+ .+-+.+|+..-.
T Consensus 67 V~~~~~~~~a~~aGA~---Fiv-sP~~~~~v~~~a~~~~i~~iPGv~TpsEi~~A~ 118 (212)
T 2v82_A 67 VLKPEQVDALARMGCQ---LIV-TPNIHSEVIRRAVGYGMTVCPGCATATEAFTAL 118 (212)
T ss_dssp CCSHHHHHHHHHTTCC---EEE-CSSCCHHHHHHHHHTTCEEECEECSHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCC---EEE-CCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 2247889999854897---898-998998999999975876338848769999999
No 129
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=21.72 E-value=33 Score=13.24 Aligned_cols=112 Identities=18% Similarity=0.251 Sum_probs=53.7
Q ss_pred CHHHHHHHCC-CCE-EEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHH---CCC--CEE-EECHHHHHH
Q ss_conf 2999999749-978-99779999999999998614479789996410799999999997---399--289-868999865
Q gi|254780371|r 17 SLEKLAHVVQ-TPF-YCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAH---LGS--GLD-IVSEGELRR 88 (431)
Q Consensus 17 ~l~~La~~~g-TP~-yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~---~G~--g~d-v~S~~El~~ 88 (431)
++.++.++.+ -|+ ..-|.+...+-.+.+.+. +.+. +=+...+......++.+.+ .++ |+- |-+...++.
T Consensus 2 ~~~~~l~~~~ii~vlr~~~~~~a~~~~~al~~~--Gi~~-iEitl~~p~a~~~I~~l~~~~~~~~~vGaGTV~~~~~~~~ 78 (205)
T 1wa3_A 2 KMEELFKKHKIVAVLRANSVEEAKEKALAVFEG--GVHL-IEITFTVPDADTVIKELSFLKEKGAIIGAGTVTSVEQCRK 78 (205)
T ss_dssp CHHHHHHHHCEEEEECCSSHHHHHHHHHHHHHT--TCCE-EEEETTSTTHHHHHHHTHHHHHTTCEEEEESCCSHHHHHH
T ss_pred CHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHC--CCCE-EEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHH
T ss_conf 879998769989999798999999999999987--9988-9996899768999999997318982896300012788999
Q ss_pred HHHCCCCCCCEEECCCCCCCHHHHHHHHCCCCCC-CCCCCHHHHHHHH
Q ss_conf 2212578431244477542012444420687233-3322024676877
Q gi|254780371|r 89 ALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCF-NVESESELKTLNQ 135 (431)
Q Consensus 89 al~~G~~~~~Ii~~g~~k~~~~l~~ai~~gv~~i-~vDs~~el~~l~~ 135 (431)
|..+|.+ -|+ .|+.+++-++.+.++++..+ .+-+.+|+..-.+
T Consensus 79 a~~aGa~--fiv--sP~~~~~v~~~~~~~~~~~iPGv~TptEi~~A~~ 122 (205)
T 1wa3_A 79 AVESGAE--FIV--SPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMK 122 (205)
T ss_dssp HHHHTCS--EEE--CSSCCHHHHHHHHHHTCEEECEECSHHHHHHHHH
T ss_pred HHHCCCC--EEE--CCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 9864874--886--7999999999999839982277487158999997
No 130
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 1zjh_A 3g2g_A 1t5a_A* 3bjt_A 3bjf_A* 1f3x_A 3n25_A 1f3w_A 1a49_A* 1a5u_A* 1aqf_A* 1pkm_A 2g50_A* 1pkn_A 2vgb_A* 2vgf_A* 2vgg_A* ...
Probab=21.37 E-value=33 Score=13.20 Aligned_cols=34 Identities=29% Similarity=0.406 Sum_probs=19.9
Q ss_pred CCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEECC
Q ss_conf 8888899996797023334027788986659999889
Q gi|254780371|r 360 PRPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMVNGS 396 (431)
Q Consensus 360 l~~GD~l~i~~~GAY~~s~~s~fn~~p~p~~v~v~~g 396 (431)
+...=++++..+|. +.-+-|.| ||+.|.+.+...
T Consensus 442 ~~a~aIv~~T~sG~-ta~~iS~~--RP~~PI~a~t~~ 475 (550)
T 3gr4_A 442 CCSGAIIVLTKSGR-SAHQVARY--RPRAPIIAVTRN 475 (550)
T ss_dssp TTCSCEEEECSSSH-HHHHHHTT--CCSSCEEEEESC
T ss_pred CCCCEEEEECCCHH-HHHHHHHH--CCCCCEEEECCC
T ss_conf 79998999869659-99999955--959988998998
No 131
>3mi6_A Alpha-galactosidase; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium, hydrolase; 2.70A {Lactobacillus brevis}
Probab=21.23 E-value=33 Score=13.18 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=14.3
Q ss_pred HHHHHHHHHHCCCCCCEEEEEEEECC
Q ss_conf 24676877411334421589987237
Q gi|254780371|r 128 SELKTLNQRAVSLGKKAPIAFRVNPD 153 (431)
Q Consensus 128 ~el~~l~~~a~~~~~~~~I~lRinp~ 153 (431)
+.|+.|.+.+.++|.+ .||=+.|+
T Consensus 393 ~GLk~Lad~vh~~Gmk--fGLW~epe 416 (745)
T 3mi6_A 393 DGIEHFSQAVHQQGMK--FGLWFEPE 416 (745)
T ss_dssp THHHHHHHHHHHTTCE--EEEEECTT
T ss_pred CCHHHHHHHHHHCCCE--EEEEECCC
T ss_conf 6579999999876987--99983101
No 132
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=20.70 E-value=34 Score=13.10 Aligned_cols=20 Identities=5% Similarity=-0.140 Sum_probs=10.2
Q ss_pred CCCCCCCCCHHHHHHHHHCC
Q ss_conf 56887111134577764156
Q gi|254780371|r 170 KFGIPIHQIHSLYAYASTLP 189 (431)
Q Consensus 170 KFGi~~~~~~~~~~~~~~~~ 189 (431)
+...+.+++.++++.+++.+
T Consensus 186 ~~~~~~~~~~~~~~~l~~a~ 205 (563)
T 2uz1_A 186 GARPDPADLDQALALLRKAE 205 (563)
T ss_dssp CCBCCHHHHHHHHHHHHHCS
T ss_pred CCCCCHHHHHHHHHHHHHCC
T ss_conf 78899999999999997179
No 133
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=20.65 E-value=21 Score=14.61 Aligned_cols=55 Identities=27% Similarity=0.372 Sum_probs=30.4
Q ss_pred EEEECH--HHHHHHHH-CCCCCCCEE-ECCCCCCCH---H---HHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 898689--99865221-257843124-447754201---2---4444206872333322024676
Q gi|254780371|r 78 LDIVSE--GELRRALA-APVPAERIV-FSGVGKTID---E---IDLALQSGIYCFNVESESELKT 132 (431)
Q Consensus 78 ~dv~S~--~El~~al~-~G~~~~~Ii-~~g~~k~~~---~---l~~ai~~gv~~i~vDs~~el~~ 132 (431)
+++.|. ..|..++. -|+|..+|+ +.||-.+-. - +..+.+.|...+-+|++..+..
T Consensus 41 i~~i~TG~~~lD~~lg~GG~p~g~i~ei~G~~~sGKTt~al~~~a~~q~~g~~~~~iD~E~~~~~ 105 (356)
T 1u94_A 41 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP 105 (356)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH
T ss_pred CEEECCCCHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCH
T ss_conf 60570697899998758997787089998986556889999999998616987999853013799
No 134
>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, cytoplasm, detoxification, magnesium, metal-binding, peroxisome, polymorphism; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A*
Probab=20.41 E-value=35 Score=13.06 Aligned_cols=43 Identities=12% Similarity=0.042 Sum_probs=33.1
Q ss_pred HHHHCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 522125784312444775420124444206872333322024676
Q gi|254780371|r 88 RALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKT 132 (431)
Q Consensus 88 ~al~~G~~~~~Ii~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~ 132 (431)
.+.+.|++|++++|-+- +..+++.|.+.|..+|-|++..+..+
T Consensus 169 a~~~lg~~p~e~l~v~D--~~~~i~~A~~~G~~~i~v~~~~~~~~ 211 (555)
T 3i28_A 169 LLDTLKASPSEVVFLDD--IGANLKPARDLGMVTILVQDTDTALK 211 (555)
T ss_dssp HHHHHTCCGGGEEEEES--CHHHHHHHHHHTCEEEECSSHHHHHH
T ss_pred HHHHHCCCHHHEEEEEC--CHHHHHHHHHCCCEEEEECCHHHHHH
T ss_conf 99982998656899928--98899999974993998447888999
No 135
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=20.11 E-value=35 Score=13.02 Aligned_cols=47 Identities=15% Similarity=0.169 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHCCCCCHHHHH-HHHHHHHHHHHHHCCCCCCCEEEECCCCCC
Q ss_conf 200233556415644204899-999999887653102666526880687300
Q gi|254780371|r 192 KISGVDMHIGSQIDQIESFHK-AFKLLRDLTQQLRSNGHNIQHIDVGGGLGI 242 (431)
Q Consensus 192 ~l~GlH~H~GS~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i 242 (431)
.+.|+.|.+..+..-|..-.. .++.+.+.... .....++|+|+|-|+
T Consensus 89 ~F~g~~f~V~~~VLIPRpeTE~Lve~~~~~~~~----~~~~~vlDlgtGSG~ 136 (284)
T 1nv8_A 89 EFMGLSFLVEEGVFVPRPETEELVELALELIRK----YGIKTVADIGTGSGA 136 (284)
T ss_dssp EETTEEEECCTTSCCCCTTHHHHHHHHHHHHHH----HTCCEEEEESCTTSH
T ss_pred EECCEEEEEECCCCCCCCHHHHHHHHHHHHHHC----CCCCEEEEEECCHHH
T ss_conf 796838998166412887589999988876503----788679986046059
Done!