RPSBLAST alignment for GI: 254780371 and conserved domain: cd06828

>gnl|CDD|143501 cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Length = 373
 Score =  497 bits (1282), Expect = e-141
 Identities = 176/374 (47%), Positives = 232/374 (62%), Gaps = 6/374 (1%)

Query: 25  VQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEG 84
             TP Y Y    I +NY     AF G    +CYA+KANSN A++K LA  G G D+VS G
Sbjct: 1   YGTPLYVYDEATIRENYRRLKEAFSGPGFKICYAVKANSNLAILKLLAEEGLGADVVSGG 60

Query: 85  ELRRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKA 144
           EL RAL A  P ERIVF+G GK+ +E++LAL+ GI   NV+S SEL+ L + A  LGK A
Sbjct: 61  ELYRALKAGFPPERIVFTGNGKSDEELELALELGILRINVDSLSELERLGEIAPELGKGA 120

Query: 145 PIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYASTLPGVKISGVDMHIGSQI 204
           P+A RVNP ++A TH  ISTG K+ KFGIP+ Q    Y  A  LPG+K+ G+  HIGSQI
Sbjct: 121 PVALRVNPGVDAGTHPYISTGGKDSKFGIPLEQALEAYRRAKELPGLKLVGLHCHIGSQI 180

Query: 205 DQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQYF 264
             +E F +A + L DL  +LR  G +++ +D+GGGLGI Y  +  P    +YA  I +  
Sbjct: 181 LDLEPFVEAAEKLLDLAAELRELGIDLEFLDLGGGLGIPYRDEDEPLDIEEYAEAIAEAL 240

Query: 265 GNLQ-----CKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMNDFMRPTLYDA 319
             L       K+I+EPGR++VA+ G+L+T+V  +K++  KTFV +D  MND +RP LY A
Sbjct: 241 KELCEGGPDLKLIIEPGRYIVANAGVLLTRVGYVKETGGKTFVGVDAGMNDLIRPALYGA 300

Query: 320 YHEINYIVNPAGDRLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQS 379
           YHEI   VN  G+      D+VGPICE+GD  A +R++     GDLL I   GAYG   S
Sbjct: 301 YHEI-VPVNKPGEGETEKVDVVGPICESGDVFAKDRELPEVEEGDLLAIHDAGAYGYSMS 359

Query: 380 GTYNSRLLIPEIMV 393
             YNSR    E++V
Sbjct: 360 SNYNSRPRPAEVLV 373