RPSBLAST alignment for GI: 254780371 and conserved domain: cd06828
>gnl|CDD|143501 cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Length = 373
Score = 497 bits (1282), Expect = e-141
Identities = 176/374 (47%), Positives = 232/374 (62%), Gaps = 6/374 (1%)
Query: 25 VQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEG 84
TP Y Y I +NY AF G +CYA+KANSN A++K LA G G D+VS G
Sbjct: 1 YGTPLYVYDEATIRENYRRLKEAFSGPGFKICYAVKANSNLAILKLLAEEGLGADVVSGG 60
Query: 85 ELRRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKA 144
EL RAL A P ERIVF+G GK+ +E++LAL+ GI NV+S SEL+ L + A LGK A
Sbjct: 61 ELYRALKAGFPPERIVFTGNGKSDEELELALELGILRINVDSLSELERLGEIAPELGKGA 120
Query: 145 PIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYASTLPGVKISGVDMHIGSQI 204
P+A RVNP ++A TH ISTG K+ KFGIP+ Q Y A LPG+K+ G+ HIGSQI
Sbjct: 121 PVALRVNPGVDAGTHPYISTGGKDSKFGIPLEQALEAYRRAKELPGLKLVGLHCHIGSQI 180
Query: 205 DQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQYF 264
+E F +A + L DL +LR G +++ +D+GGGLGI Y + P +YA I +
Sbjct: 181 LDLEPFVEAAEKLLDLAAELRELGIDLEFLDLGGGLGIPYRDEDEPLDIEEYAEAIAEAL 240
Query: 265 GNLQ-----CKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMNDFMRPTLYDA 319
L K+I+EPGR++VA+ G+L+T+V +K++ KTFV +D MND +RP LY A
Sbjct: 241 KELCEGGPDLKLIIEPGRYIVANAGVLLTRVGYVKETGGKTFVGVDAGMNDLIRPALYGA 300
Query: 320 YHEINYIVNPAGDRLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQS 379
YHEI VN G+ D+VGPICE+GD A +R++ GDLL I GAYG S
Sbjct: 301 YHEI-VPVNKPGEGETEKVDVVGPICESGDVFAKDRELPEVEEGDLLAIHDAGAYGYSMS 359
Query: 380 GTYNSRLLIPEIMV 393
YNSR E++V
Sbjct: 360 SNYNSRPRPAEVLV 373