RPSBLAST alignment for GI: 254780371 and conserved domain: cd06836
>gnl|CDD|143505 cd06836, PLPDE_III_ODC_DapDC_like_1, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity. Length = 379
Score = 161 bits (408), Expect = 5e-40
Identities = 108/377 (28%), Positives = 171/377 (45%), Gaps = 40/377 (10%)
Query: 37 IEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEGELRRALAAPVPA 96
+ AF + +A+KAN V++ LA G+G ++ S GEL ALAA P
Sbjct: 13 FRALVARLTAAFPA-PVLHTFAVKANPLVPVLRLLAEAGAGAEVASPGELELALAAGFPP 71
Query: 97 ERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGK-KAPIAFRVNPDIN 155
ERIVF KT E+ AL+ G+ N+++ EL+ ++ + + I RVNP +
Sbjct: 72 ERIVFDSPAKTRAELREALELGVA-INIDNFQELERIDALVAEFKEASSRIGLRVNPQVG 130
Query: 156 ANTHKKISTGKKEDKFGIPIHQIHS---LYAYASTLPGVKISGVDMHIGSQ---IDQI-E 208
A +ST KFG+ + + A+A P + G+ +H+GSQ + + E
Sbjct: 131 AGKIGALSTATATSKFGVALEDGARDEIIDAFARR-PWLN--GLHVHVGSQGCELSLLAE 187
Query: 209 SFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQYFGNL- 267
+ L ++ +++ I ID+GGGL + + S+ P+ +DYA+ + L
Sbjct: 188 GIRRVVDLAEEINRRVGRR--QITRIDIGGGLPVNFESEDITPTFADYAAALKAAVPELF 245
Query: 268 --QCKIILEPGRFLVADVGILVTKVISIKKSADKTFVIL----DVAMNDFMRP------- 314
+ +++ E GR L+A G +V++V K S + I VA P
Sbjct: 246 DGRYQLVTEFGRSLLAKCGTIVSRVEYTKSSGGRRIAITHAGAQVATRTAYAPDDWPLRV 305
Query: 315 TLYDAYHEINYIVNPAGDRLHIHADIVGPICETGDFIALNRKIALPR--PGDLLYIEKTG 372
T++DA E P + D+ GP C GD +A R ALP PGD + + TG
Sbjct: 306 TVFDANGE------PKTGPEVVT-DVAGPCCFAGDVLAKER--ALPPLEPGDYVAVHDTG 356
Query: 373 AYGAVQSGTYNSRLLIP 389
AY +YNS
Sbjct: 357 AYYFSSHSSYNSLPRPA 373