RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780371|ref|YP_003064784.1| diaminopimelate decarboxylase protein [Candidatus Liberibacter asiaticus str. psy62] (431 letters) >gnl|CDD|162174 TIGR01048, lysA, diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis. Length = 417 Score = 463 bits (1193), Expect = e-131 Identities = 185/415 (44%), Positives = 262/415 (63%), Gaps = 6/415 (1%) Query: 6 YFEGSLHAENVSLEKLAHVVQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQ 65 +G L E V L +LA TP Y Y I + + + AF G ++VCYA+KANSN Sbjct: 4 NKDGELFIEGVDLLELAEEFGTPLYVYDEETIRERFRAYKEAFGGAYSLVCYAVKANSNL 63 Query: 66 AVIKTLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVE 125 A+++ LA LGSG D+VS GEL RALAA P E+IVF+G GK+ E++ AL+ GI C NV+ Sbjct: 64 ALLRLLAELGSGFDVVSGGELYRALAAGFPPEKIVFNGNGKSRAELERALELGIRCINVD 123 Query: 126 SESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYA 185 SESEL+ LN+ A LGKKA ++ RVNP ++A TH ISTG ++ KFGI + + Y YA Sbjct: 124 SESELELLNEIAPELGKKARVSLRVNPGVDAKTHPYISTGLEDSKFGIDVEEALEAYLYA 183 Query: 186 STLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYH 245 LP +++ G+ HIGSQI + F +A + + DL ++L++ G +++ +D+GGGLGI Y Sbjct: 184 LQLPHLELVGIHCHIGSQITDLSPFVEAAEKVVDLVEELKAEGIDLEFLDLGGGLGIPYT 243 Query: 246 SDHRPPSSSDYASLIHQYF-----GNLQCKIILEPGRFLVADVGILVTKVISIKKSADKT 300 + PP +YA I L K+ILEPGR +VA+ G+L+T+V +K+ + Sbjct: 244 PEEEPPDPEEYAQAILAALEGYADLGLDPKLILEPGRSIVANAGVLLTRVGFVKEVGSRN 303 Query: 301 FVILDVAMNDFMRPTLYDAYHEINYIVNPAGDRLHIHADIVGPICETGDFIALNRKIALP 360 FVI+D MND +RP LY AYH I + N D AD+VGP+CE+GD +A +R++ Sbjct: 304 FVIVDAGMNDLIRPALYGAYHHI-IVANRTNDAPTEVADVVGPLCESGDVLARDRELPEV 362 Query: 361 RPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMVNGSQFHIIRPRMTFQELIELDS 415 PGDLL + GAYGA S YNSR E++V+G Q +IR R T+++L+ L+ Sbjct: 363 EPGDLLAVFDAGAYGASMSSNYNSRPRPAEVLVDGGQARLIRRRETYEDLLALEV 417 >gnl|CDD|178152 PLN02537, PLN02537, diaminopimelate decarboxylase. Length = 410 Score = 270 bits (692), Expect = 5e-73 Identities = 132/403 (32%), Positives = 220/403 (54%), Gaps = 5/403 (1%) Query: 11 LHAENVSLEK-LAHVVQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIK 69 L+ E + ++ + V + PFY YS I +NY + A +G+ +++ YA+KAN+N +++ Sbjct: 1 LYCEGLRVQDIMESVEKRPFYLYSKPQITRNYEAYKEALEGLRSIIGYAIKANNNLKILE 60 Query: 70 TLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVESESE 129 L LG G +VS ELR AL A R +F+G GK ++++ LA Q G++ NV+SE + Sbjct: 61 HLRELGCGAVLVSGNELRLALRAGFDPTRCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 119 Query: 130 LKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYASTLP 189 L+ + + A GKK + R+NPD++ H ++TG K KFGI ++ P Sbjct: 120 LENIVEAARIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 179 Query: 190 G-VKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAY-HSD 247 +K+ G H+GS I +++ F A L+ + ++R+ G + ++++GGGLGI Y H+ Sbjct: 180 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYVDEIRAQGFELSYLNIGGGLGIDYYHAG 239 Query: 248 HRPPSSSDYASLIHQYFGNLQCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVA 307 P+ D + + + +I+EPGR L+A+ V +V +K + K F+++D + Sbjct: 240 AVLPTPRDLIDTVRELVLSRDLTLIIEPGRSLIANTCCFVNRVTGVKTNGTKNFIVIDGS 299 Query: 308 MNDFMRPTLYDAYHEINYIVNPAGDRLHIHADIVGPICETGDFIALNRKIALPRPGDLLY 367 M + +RP+LYDAY I + P D D+VGP+CE+ DF+ +R++ P G L Sbjct: 300 MAELIRPSLYDAYQHIELVSPPPPDAEVSTFDVVGPVCESADFLGKDRELPTPPKGAGLV 359 Query: 368 IEKTGAYGAVQSGTYNSRLLIPEIMV-NGSQFHIIRPRMTFQE 409 + GAY + TYN ++ PE V IR TF + Sbjct: 360 VHDAGAYCMSMASTYNLKMRPPEYWVEEDGSITKIRHAETFDD 402 >gnl|CDD|183006 PRK11165, PRK11165, diaminopimelate decarboxylase; Provisional. Length = 420 Score = 224 bits (572), Expect = 5e-59 Identities = 140/435 (32%), Positives = 204/435 (46%), Gaps = 65/435 (14%) Query: 17 SLEKLAHVVQTPFYCYSTTAIEK--NYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHL 74 +L +L TP + Y I + L FD ++ +A KA SN +++ + Sbjct: 16 NLLRLPAEYGTPLWVYDADIIRRRIAQL---RQFD----VIRFAQKACSNIHILRLMREQ 68 Query: 75 GSGLDIVSEGELRRALAA-----PVPAERIVFSGVGKTIDEIDLA-----LQSGIYCFNV 124 G +D VS GE+ RALAA P E IVF T D ID A ++ I N Sbjct: 69 GVKVDAVSLGEIERALAAGYKPGTEPDE-IVF-----TADVIDRATLARVVELKI-PVNA 121 Query: 125 ESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAY 184 S L L Q + + R+NP +K +TG + K GI + + A Sbjct: 122 GSIDMLDQLGQVS----PGHRVWLRINPGFGHGHSQKTNTGGENSKHGIWHEDLPAALAV 177 Query: 185 ASTLPGVKISGVDMHIGSQID--QIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGI 242 G+K+ G+ MHIGS +D +E A + +Q+ G +I+ I GGGL I Sbjct: 178 IQRY-GLKLVGIHMHIGSGVDYGHLEQVCGA------MVRQVIELGQDIEAISAGGGLSI 230 Query: 243 AYHSDHRPPSSSDYASL-------IHQYFGNLQCKIILE--PGRFLVADVGILVTKVISI 293 Y P + Y L I ++ G + LE PGRFLVA+ G+LV +V ++ Sbjct: 231 PYREGEEPVDTEHYFGLWDAARKRIARHLG---HPVKLEIEPGRFLVAESGVLVAQVRAV 287 Query: 294 KKSADKTFVILDVAMNDFMRPTLYDAYHEINYIVNPAGDRLHIHADIV-----GPICETG 348 K+ + FV++D ND MRP +Y +YH I+ + A R A V GP+CE+G Sbjct: 288 KQMGSRHFVLVDAGFNDLMRPAMYGSYHHISVL--AADGRSLEEAPTVDTVVAGPLCESG 345 Query: 349 D-F------IALNRKIALPRPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMVNGSQFHII 401 D F + R + + GD L TGAYGA S YNSR L+PE++ + Q +I Sbjct: 346 DVFTQQEGGVVETRALPQVQVGDYLVFHDTGAYGASMSSNYNSRPLLPEVLFDNGQARLI 405 Query: 402 RPRMTFQELIELDSI 416 R R T +EL+ L+ + Sbjct: 406 RRRQTIEELLALELL 420 >gnl|CDD|181596 PRK08961, PRK08961, bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional. Length = 861 Score = 216 bits (553), Expect = 7e-57 Identities = 120/392 (30%), Positives = 187/392 (47%), Gaps = 31/392 (7%) Query: 12 HAENVSLEKLAHVVQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTL 71 HAE L L+ +P Y Y + A +D YA+KAN + A+++TL Sbjct: 489 HAERARLLTLSDA-GSPCYVYHLPTVRARARAL-AALAAVDQRF-YAIKANPHPAILRTL 545 Query: 72 AHLGSGLDIVSEGELRRALAA-P-VPAERIVFSGVGKTIDEIDLALQSGIYCFNVESESE 129 G G + VS GELRR P + ER++F+ E + A G+ +++ Sbjct: 546 EEEGFGFECVSIGELRRVFELFPELSPERVLFTPNFAPRAEYEAAFALGVT-VTLDNVEP 604 Query: 130 LKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYASTLP 189 L+ L + + R++P H+K+ TG KE KFG+ +I A TL Sbjct: 605 LR----NWPELFRGREVWLRIDPGHGDGHHEKVRTGGKESKFGLSQTRIDEFVDLAKTL- 659 Query: 190 GVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHR 249 G+ + G+ H+GS I+ E + + L ++ ++ ID+GGGLGI + Sbjct: 660 GITVVGLHAHLGSGIETGEHWRRMADELASFARRFPD----VRTIDLGGGLGIPESAGDE 715 Query: 250 PPSSSDYASLIH----QYFGNLQCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILD 305 P + + Q+ ++ +EPGR+LVA+ G+L+ +V +K+ V L+ Sbjct: 716 PFDLDALDAGLAEVKAQH---PGYQLWIEPGRYLVAEAGVLLARVTQVKEKDGVRRVGLE 772 Query: 306 VAMNDFMRPTLYDAYHEINYIVNPAGDRLH----IHADIVGPICETGDFIALNRKIALPR 361 MN +RP LY AYHE IVN + RL AD+VGPICE+ D + R++ Sbjct: 773 TGMNSLIRPALYGAYHE---IVNLS--RLDEPAAGTADVVGPICESSDVLGKRRRLPATA 827 Query: 362 PGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMV 393 GD++ I GAYG S TYN R E+++ Sbjct: 828 EGDVILIANAGAYGYSMSSTYNLREPAREVVL 859 >gnl|CDD|132143 TIGR03099, dCO2ase_PEP1, pyridoxal-dependent decarboxylase, exosortase system type 1 associated. The sequences in this family contain the pyridoxal binding domain (pfam02784) and C-terminal sheet domain (pfam00278) of a family of Pyridoxal-dependent decarboxylases. Characterized enzymes in this family decarboxylate substrates such as ornithine, diaminopimelate and arginine. The genes of the family modeled here, with the exception of those observed in certain Burkholderia species, are all found in the context of exopolysaccharide biosynthesis loci containing the exosortase/PEP-CTERM protein sorting system. More specifically, these are characteristic of the type 1 exosortase system represented by the Genome Property GenProp0652. The substrate of these enzymes may be a precursor of the carrier or linker which is hypothesized to release the PEP-CTERM protein from the exosortase enzyme. These enzymes are apparently most closely related to the diaminopimelate decarboxylase modeled by TIGR01048 which may suggest a similarity (or identity) of substrate. Length = 398 Score = 188 bits (479), Expect = 2e-48 Identities = 121/397 (30%), Positives = 179/397 (45%), Gaps = 45/397 (11%) Query: 9 GSLHAENVSLEKLAHVV-QTPFYCYSTTAIEKNYLTFSNAF-DGMDTMVCYALKANSNQA 66 G L + L +LA TPFY Y + + A + + + YA+KAN A Sbjct: 6 GCLCVGGIPLTELAARAGGTPFYAYDRGLVSERVAALRKALPEELA--IHYAVKANPMPA 63 Query: 67 VIKTLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVES 126 ++ +A L G D+ S GEL AL I F+G GKT E+ AL +G+ NVES Sbjct: 64 LLAHMAPLVDGFDVASAGELAVALDTGYDPGCISFAGPGKTDAELRRALAAGV-LINVES 122 Query: 127 ESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYAS 186 EL L + +LG +A +A RVNPD + G +FGI Q+ + A+ Sbjct: 123 LRELNRLAALSEALGLRARVAVRVNPDFELKG-SGMKMGGGAKQFGIDAEQVPAALAFIK 181 Query: 187 TLPGVKISGVDMHIGSQ-IDQ---IESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGI 242 + G + GSQ ++ IE+ K L L S ++ I++GGG GI Sbjct: 182 AA-DLDFQGFHIFAGSQNLNAEAIIEAQAKTLALALRLA---ESAPAPVRVINIGGGFGI 237 Query: 243 AYHSDHRPPSSSDYASLIHQYFGNL-----QCKIILEPGRFLVADVGILVTKVISIKKSA 297 Y + P + + + F L + +I+LE GR+LV + GI V +VI K S Sbjct: 238 PYFPGNPPLDLAPVGAALAALFARLRDALPEVEILLELGRYLVGEAGIYVCRVIDRKISR 297 Query: 298 DKTFVILDVAMNDFMRPTLYDAYHEI------------NY---IVNPAGDRLHIHADIVG 342 +TF++ D ++ H + NY I N G + A IVG Sbjct: 298 GETFLVTDGGLH-----------HHLSASGNFGQVIRRNYPVVIGNRIGGAVREIASIVG 346 Query: 343 PICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQS 379 P+C D +A + + PGDL+ I ++GAYGA S Sbjct: 347 PLCTPLDLLAEKGTLPVAEPGDLVVIFQSGAYGASAS 383 >gnl|CDD|162279 TIGR01273, speA, arginine decarboxylase, biosynthetic. A distinct biodegradative form is also pyridoxal phosphate-dependent but is not similar in sequence. Length = 624 Score = 86.2 bits (214), Expect = 2e-17 Identities = 77/263 (29%), Positives = 118/263 (44%), Gaps = 33/263 (12%) Query: 57 YALKANSNQAVIKTLAHLGS----GLDIVSEGELRRALA-APVPAERIVFSGVGKTIDEI 111 Y +K N +++V++ + G GL+ S+ EL A+A A P IV +G K + I Sbjct: 95 YPIKVNQHRSVVEDIVAFGKGLNYGLEAGSKPELLAAMAYATKPGAPIVCNGY-KDREYI 153 Query: 112 DLALQSGIYCFNV----ESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKK 167 +LAL NV E SEL + + A LG K + R + + K S+G + Sbjct: 154 ELALIGRKLGHNVFIVIEKLSELDLVIEEAKKLGVKPKLGLRARL-ASKGSGKWASSGGE 212 Query: 168 EDKFGIPIHQIHS---LYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQL 224 + KFG+ QI L L +K+ + HIGSQI I+ K + +L Sbjct: 213 KSKFGLSATQILEVVRLLEQNGLLDCLKL--LHFHIGSQISNIDDVKKGVREAARFYCEL 270 Query: 225 RSNGHNIQHIDVGGGLGIAYH-SDHRPPSSSDYASLIHQYFGNL------QCK------- 270 R G I ++DVGGGLG+ Y + S +Y + +Y ++ C Sbjct: 271 RKLGAKITYVDVGGGLGVDYDGTSSSSDCSVNYG--LEEYAADVVQALREICDEKGVPHP 328 Query: 271 -IILEPGRFLVADVGILVTKVIS 292 II E GR + A +L+T V+ Sbjct: 329 VIITESGRAITAHHAVLITNVLG 351 >gnl|CDD|180035 PRK05354, PRK05354, arginine decarboxylase; Provisional. Length = 634 Score = 61.7 bits (151), Expect = 4e-10 Identities = 76/285 (26%), Positives = 117/285 (41%), Gaps = 79/285 (27%) Query: 57 YALKANSNQAVIKTLAHLGS----GLDIVSEGELRRALA-APVPAERIVFSGVGKTIDEI 111 Y +K N + V++ + G GL+ S+ EL LA A P IV +G K + I Sbjct: 102 YPIKVNQQRRVVEEIVASGKPYNLGLEAGSKPELMAVLALAGDPGALIVCNGY-KDREYI 160 Query: 112 DLAL---QSGIYCFNV-ESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKIST--- 164 LAL + G F V E SEL+ + + A LG K + R ++++ Sbjct: 161 RLALIGRKLGHKVFIVIEKLSELELILEEAKELGVKPRLGVRA----------RLASQGS 210 Query: 165 GKKED------KFGIPIHQIHSLYAYASTLPGVKISGVDM---------------HIGSQ 203 GK + KFG+ ++ + V+ H+GSQ Sbjct: 211 GKWQSSGGEKSKFGLSATEV--------------LEAVERLREAGLLDCLQLLHFHLGSQ 256 Query: 204 IDQIESFHKAFKLLRDLTQ---QLRSNGHNIQHIDVGGGLGIAYH-SDHRPPSS-----S 254 I I A +R+ + +LR G IQ++DVGGGLG+ Y + + SS Sbjct: 257 IANIRDIKTA---VREAARFYVELRKLGAPIQYLDVGGGLGVDYDGTRSQSDSSVNYSLQ 313 Query: 255 DYASLIHQYFGNLQCK--------IILEPGRFLVADVGILVTKVI 291 +YA+ + + C+ II E GR L A +LV V+ Sbjct: 314 EYANDVVYTLKEI-CEEHGVPHPTIISESGRALTAHHAVLVFNVL 357 >gnl|CDD|178058 PLN02439, PLN02439, arginine decarboxylase. Length = 559 Score = 52.8 bits (127), Expect = 2e-07 Identities = 66/277 (23%), Positives = 111/277 (40%), Gaps = 48/277 (17%) Query: 57 YALKANSNQAVIKTLAHLGS----GLDIVSEGELRRALAA---PVPAERIVFSGVGKTID 109 + +K N ++ +++ + GS GL+ S+ EL A++ P ++ +G K + Sbjct: 37 FPVKCNQDRFLVEDIVKFGSPFRFGLEAGSKPELLLAMSCLCKGSPDAFLICNGY-KDAE 95 Query: 110 EIDLALQS---GIYCFNV-ESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTG 165 + LAL + G+ V E E EL + + + LG + I R + H ++G Sbjct: 96 YVSLALLARKLGLNTVIVLEQEEELDLVIEASQRLGVRPVIGVRAKLRTKHSGHFGSTSG 155 Query: 166 KKEDKFGIPIHQIHSLYAYASTLPGVKISGVDM---------HIGSQIDQIESFHKAFKL 216 +K KFG+ +I + K+ M HIGSQI Sbjct: 156 EK-GKFGLTATEIVRVVR--------KLRKEGMLDCLQLLHFHIGSQIPSTSLLKDGVSE 206 Query: 217 LRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSD---------YASLIHQYFGNL 267 + +L G ++ ID+GGGLGI Y SSD YA+ + ++ Sbjct: 207 AAQIYCELVRLGAPMRVIDIGGGLGIDYDGSKS--GSSDMSVAYSLEEYANAVVAAVRDV 264 Query: 268 -------QCKIILEPGRFLVADVGILVTKVISIKKSA 297 I E GR LV+ +L+ + +S K Sbjct: 265 CDRKGVKHPVICSESGRALVSHHSVLIFEAVSASKRG 301 >gnl|CDD|162173 TIGR01047, nspC, carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus. Length = 380 Score = 35.5 bits (82), Expect = 0.024 Identities = 40/148 (27%), Positives = 61/148 (41%), Gaps = 21/148 (14%) Query: 270 KIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMNDFMRPTLYDAYH-EINYIVN 328 ++ILEPG + G LV V+ I ++ +K ILDV+ M TL Y + + Sbjct: 228 QVILEPGEAIGWQTGFLVASVVDIVEN-EKKIAILDVSFEAHMPDTLEMPYRPSVLGASD 286 Query: 329 PAGDRLHIHAD--------IVGPICETGDFIALNRKIALPRP---GDLLYIEKTGAYGAV 377 PA + + G C GD + + A P GD L Y V Sbjct: 287 PATRENEEISLKEGQFSYVLGGCTCLAGDVMG---EYAFDEPLKVGDKLVFLDMIHYTMV 343 Query: 378 QSGTYNSRLLIPEIMV---NGSQFHIIR 402 ++ T+N + +P + NG +F IR Sbjct: 344 KNTTFNG-VKLPSLGCLRANG-EFQKIR 369 >gnl|CDD|168352 PRK06025, PRK06025, acetyl-CoA acetyltransferase; Provisional. Length = 417 Score = 31.3 bits (71), Expect = 0.44 Identities = 13/24 (54%), Positives = 16/24 (66%) Query: 90 LAAPVPAERIVFSGVGKTIDEIDL 113 L APVPA + V + G T D+IDL Sbjct: 314 LNAPVPAAKKVLAKAGLTKDDIDL 337 >gnl|CDD|151018 pfam10441, Urb2, Urb2/Npa2 family. This family includes the Urb2 protein from yeast that are involved in ribosome biogenesis. Length = 220 Score = 29.6 bits (67), Expect = 1.6 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%) Query: 104 VGKTID-EIDLALQSGIYC-FNVESESELKTLN 134 +G E+ AL GIY +V SESEL+ LN Sbjct: 162 LGVGFPPEVKEALTPGIYSILDVLSESELQALN 194 >gnl|CDD|181123 PRK07801, PRK07801, acetyl-CoA acetyltransferase; Provisional. Length = 382 Score = 29.3 bits (66), Expect = 1.8 Identities = 11/24 (45%), Positives = 15/24 (62%) Query: 90 LAAPVPAERIVFSGVGKTIDEIDL 113 L AP+PA R G +ID+ID+ Sbjct: 279 LTAPIPATRYALEKTGLSIDDIDV 302 >gnl|CDD|179825 PRK04326, PRK04326, methionine synthase; Provisional. Length = 330 Score = 29.2 bits (66), Expect = 2.2 Identities = 12/27 (44%), Positives = 16/27 (59%) Query: 73 HLGSGLDIVSEGELRRALAAPVPAERI 99 H +G+DI +GE+RR AERI Sbjct: 55 HERAGVDIPVDGEMRREEMVEYFAERI 81 >gnl|CDD|183871 PRK13146, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional. Length = 209 Score = 28.6 bits (65), Expect = 3.4 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 4/39 (10%) Query: 67 VIKTLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGVG 105 K L G+G D+V + AA +R+V GVG Sbjct: 17 AAKALERAGAGADVVVTADPDAVAAA----DRVVLPGVG 51 >gnl|CDD|178827 PRK00053, alr, alanine racemase; Reviewed. Length = 363 Score = 28.2 bits (64), Expect = 4.1 Identities = 35/189 (18%), Positives = 68/189 (35%), Gaps = 37/189 (19%) Query: 50 GMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEG-ELRRA-LAAPVPAERIVFSGVGKT 107 G + L+A ++ + TL E ELR A + AP+ ++ G Sbjct: 42 GAVEVAKTLLEAGADGFGVATL----------EEALELREAGITAPI----LILGGFF-P 86 Query: 108 IDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKK 167 +++ L + + V S +L+ L + LGK + H KI TG Sbjct: 87 AEDLPLIIAYNLT-TAVHSLEQLEALEK--AELGKPLKV------------HLKIDTGM- 130 Query: 168 EDKFGIPIHQIHSLYAYASTLPGVKISGVDMHIGSQIDQIES--FHKAFKLLRDLTQQLR 225 + G+ + + P V++ G+ H + D+ ++ + L Sbjct: 131 -HRLGVRPEEAEAALERLLACPNVRLEGIFSHFATA-DEPDNSYTEQQLNRFEAALAGLP 188 Query: 226 SNGHNIQHI 234 G ++H+ Sbjct: 189 GKGKPLRHL 197 >gnl|CDD|165268 PHA02962, PHA02962, hypothetical protein; Provisional. Length = 722 Score = 28.0 bits (62), Expect = 5.4 Identities = 15/63 (23%), Positives = 26/63 (41%) Query: 142 KKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYASTLPGVKISGVDMHIG 201 KKA + + N + H++ F IPI +I L + + +P + I Sbjct: 435 KKARSFLSIKDNYNIDFHEEFDIIDLPRSFNIPIKEIADLKEFNNIIPFISDKSYKFKIA 494 Query: 202 SQI 204 SQ+ Sbjct: 495 SQL 497 >gnl|CDD|181272 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed. Length = 614 Score = 27.9 bits (63), Expect = 5.6 Identities = 25/95 (26%), Positives = 29/95 (30%), Gaps = 26/95 (27%) Query: 77 GLDIVSEGEL-RRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQ 135 GL +G RALAA VPA+ V + G + L T Sbjct: 148 GLVFADDGAAFARALAAVVPADVEVVAVRGAVPGRAATPF-----------AALLATPPT 196 Query: 136 RAVSLGKKAPIAFRVNPDINANTHKKI-----STG 165 AV V PD T K STG Sbjct: 197 AAV-----DAAHAAVGPD----TIAKFLFTSGSTG 222 >gnl|CDD|181315 PRK08242, PRK08242, acetyl-CoA acetyltransferase; Validated. Length = 402 Score = 27.5 bits (62), Expect = 6.4 Identities = 12/24 (50%), Positives = 15/24 (62%) Query: 90 LAAPVPAERIVFSGVGKTIDEIDL 113 L PVPA R + G T+D+IDL Sbjct: 299 LTGPVPATRKALAKAGLTVDDIDL 322 >gnl|CDD|150823 pfam10208, Armet, Degradation arginine-rich protein for mis-folding. This is a family of small proteins of approximately 170 residues which contain four di-sulfide bridges that are highly conserved from nematodes to humans. Armet is a soluble protein resident in the endoplasmic reticulum and induced by ER stress. It appears to be involved with dealing with mis-folded proteins in the ER, thus in quality control of ER stress. Length = 154 Score = 27.4 bits (61), Expect = 7.1 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 13/68 (19%) Query: 32 YSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEGELRRALA 91 +S IEK + F G + CY L A S+ A K E+ + L+ Sbjct: 23 FSPDKIEKELIKFCKDTKGKENRFCYYLGALSDSAT-KIT------------NEVSKPLS 69 Query: 92 APVPAERI 99 +P E+I Sbjct: 70 WHMPVEKI 77 >gnl|CDD|180165 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional. Length = 342 Score = 27.5 bits (62), Expect = 7.6 Identities = 8/13 (61%), Positives = 10/13 (76%) Query: 237 GGGLGIAYHSDHR 249 GGG+GI+ H HR Sbjct: 113 GGGVGISAHGSHR 125 >gnl|CDD|183195 PRK11557, PRK11557, putative DNA-binding transcriptional regulator; Provisional. Length = 278 Score = 27.0 bits (60), Expect = 9.3 Identities = 12/48 (25%), Positives = 24/48 (50%) Query: 58 ALKANSNQAVIKTLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGVG 105 L+ + + + A + + LD+ SE +L + A RI+ +G+G Sbjct: 90 PLRLVGEKLIKENTAAMRATLDVNSEEKLHECVTMLRSARRIILTGIG 137 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.320 0.137 0.397 Gapped Lambda K H 0.267 0.0669 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 7,046,609 Number of extensions: 459912 Number of successful extensions: 883 Number of sequences better than 10.0: 1 Number of HSP's gapped: 855 Number of HSP's successfully gapped: 28 Length of query: 431 Length of database: 5,994,473 Length adjustment: 96 Effective length of query: 335 Effective length of database: 3,920,105 Effective search space: 1313235175 Effective search space used: 1313235175 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 59 (26.6 bits)