RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780371|ref|YP_003064784.1| diaminopimelate decarboxylase
protein [Candidatus Liberibacter asiaticus str. psy62]
         (431 letters)



>gnl|CDD|162174 TIGR01048, lysA, diaminopimelate decarboxylase.  This family
           consists of diaminopimelate decarboxylase, an enzyme
           which catalyzes the conversion of diaminopimelic acid
           into lysine during the last step of lysine biosynthesis.
          Length = 417

 Score =  463 bits (1193), Expect = e-131
 Identities = 185/415 (44%), Positives = 262/415 (63%), Gaps = 6/415 (1%)

Query: 6   YFEGSLHAENVSLEKLAHVVQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQ 65
             +G L  E V L +LA    TP Y Y    I + +  +  AF G  ++VCYA+KANSN 
Sbjct: 4   NKDGELFIEGVDLLELAEEFGTPLYVYDEETIRERFRAYKEAFGGAYSLVCYAVKANSNL 63

Query: 66  AVIKTLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVE 125
           A+++ LA LGSG D+VS GEL RALAA  P E+IVF+G GK+  E++ AL+ GI C NV+
Sbjct: 64  ALLRLLAELGSGFDVVSGGELYRALAAGFPPEKIVFNGNGKSRAELERALELGIRCINVD 123

Query: 126 SESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYA 185
           SESEL+ LN+ A  LGKKA ++ RVNP ++A TH  ISTG ++ KFGI + +    Y YA
Sbjct: 124 SESELELLNEIAPELGKKARVSLRVNPGVDAKTHPYISTGLEDSKFGIDVEEALEAYLYA 183

Query: 186 STLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYH 245
             LP +++ G+  HIGSQI  +  F +A + + DL ++L++ G +++ +D+GGGLGI Y 
Sbjct: 184 LQLPHLELVGIHCHIGSQITDLSPFVEAAEKVVDLVEELKAEGIDLEFLDLGGGLGIPYT 243

Query: 246 SDHRPPSSSDYASLIHQYF-----GNLQCKIILEPGRFLVADVGILVTKVISIKKSADKT 300
            +  PP   +YA  I           L  K+ILEPGR +VA+ G+L+T+V  +K+   + 
Sbjct: 244 PEEEPPDPEEYAQAILAALEGYADLGLDPKLILEPGRSIVANAGVLLTRVGFVKEVGSRN 303

Query: 301 FVILDVAMNDFMRPTLYDAYHEINYIVNPAGDRLHIHADIVGPICETGDFIALNRKIALP 360
           FVI+D  MND +RP LY AYH I  + N   D     AD+VGP+CE+GD +A +R++   
Sbjct: 304 FVIVDAGMNDLIRPALYGAYHHI-IVANRTNDAPTEVADVVGPLCESGDVLARDRELPEV 362

Query: 361 RPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMVNGSQFHIIRPRMTFQELIELDS 415
            PGDLL +   GAYGA  S  YNSR    E++V+G Q  +IR R T+++L+ L+ 
Sbjct: 363 EPGDLLAVFDAGAYGASMSSNYNSRPRPAEVLVDGGQARLIRRRETYEDLLALEV 417


>gnl|CDD|178152 PLN02537, PLN02537, diaminopimelate decarboxylase.
          Length = 410

 Score =  270 bits (692), Expect = 5e-73
 Identities = 132/403 (32%), Positives = 220/403 (54%), Gaps = 5/403 (1%)

Query: 11  LHAENVSLEK-LAHVVQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIK 69
           L+ E + ++  +  V + PFY YS   I +NY  +  A +G+ +++ YA+KAN+N  +++
Sbjct: 1   LYCEGLRVQDIMESVEKRPFYLYSKPQITRNYEAYKEALEGLRSIIGYAIKANNNLKILE 60

Query: 70  TLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVESESE 129
            L  LG G  +VS  ELR AL A     R +F+G GK ++++ LA Q G++  NV+SE +
Sbjct: 61  HLRELGCGAVLVSGNELRLALRAGFDPTRCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 119

Query: 130 LKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYASTLP 189
           L+ + + A   GKK  +  R+NPD++   H  ++TG K  KFGI   ++          P
Sbjct: 120 LENIVEAARIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 179

Query: 190 G-VKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAY-HSD 247
             +K+ G   H+GS I +++ F  A  L+ +   ++R+ G  + ++++GGGLGI Y H+ 
Sbjct: 180 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYVDEIRAQGFELSYLNIGGGLGIDYYHAG 239

Query: 248 HRPPSSSDYASLIHQYFGNLQCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVA 307
              P+  D    + +   +    +I+EPGR L+A+    V +V  +K +  K F+++D +
Sbjct: 240 AVLPTPRDLIDTVRELVLSRDLTLIIEPGRSLIANTCCFVNRVTGVKTNGTKNFIVIDGS 299

Query: 308 MNDFMRPTLYDAYHEINYIVNPAGDRLHIHADIVGPICETGDFIALNRKIALPRPGDLLY 367
           M + +RP+LYDAY  I  +  P  D      D+VGP+CE+ DF+  +R++  P  G  L 
Sbjct: 300 MAELIRPSLYDAYQHIELVSPPPPDAEVSTFDVVGPVCESADFLGKDRELPTPPKGAGLV 359

Query: 368 IEKTGAYGAVQSGTYNSRLLIPEIMV-NGSQFHIIRPRMTFQE 409
           +   GAY    + TYN ++  PE  V        IR   TF +
Sbjct: 360 VHDAGAYCMSMASTYNLKMRPPEYWVEEDGSITKIRHAETFDD 402


>gnl|CDD|183006 PRK11165, PRK11165, diaminopimelate decarboxylase; Provisional.
          Length = 420

 Score =  224 bits (572), Expect = 5e-59
 Identities = 140/435 (32%), Positives = 204/435 (46%), Gaps = 65/435 (14%)

Query: 17  SLEKLAHVVQTPFYCYSTTAIEK--NYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHL 74
           +L +L     TP + Y    I +    L     FD    ++ +A KA SN  +++ +   
Sbjct: 16  NLLRLPAEYGTPLWVYDADIIRRRIAQL---RQFD----VIRFAQKACSNIHILRLMREQ 68

Query: 75  GSGLDIVSEGELRRALAA-----PVPAERIVFSGVGKTIDEIDLA-----LQSGIYCFNV 124
           G  +D VS GE+ RALAA       P E IVF     T D ID A     ++  I   N 
Sbjct: 69  GVKVDAVSLGEIERALAAGYKPGTEPDE-IVF-----TADVIDRATLARVVELKI-PVNA 121

Query: 125 ESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAY 184
            S   L  L Q +        +  R+NP       +K +TG +  K GI    + +  A 
Sbjct: 122 GSIDMLDQLGQVS----PGHRVWLRINPGFGHGHSQKTNTGGENSKHGIWHEDLPAALAV 177

Query: 185 ASTLPGVKISGVDMHIGSQID--QIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGI 242
                G+K+ G+ MHIGS +D   +E    A      + +Q+   G +I+ I  GGGL I
Sbjct: 178 IQRY-GLKLVGIHMHIGSGVDYGHLEQVCGA------MVRQVIELGQDIEAISAGGGLSI 230

Query: 243 AYHSDHRPPSSSDYASL-------IHQYFGNLQCKIILE--PGRFLVADVGILVTKVISI 293
            Y     P  +  Y  L       I ++ G     + LE  PGRFLVA+ G+LV +V ++
Sbjct: 231 PYREGEEPVDTEHYFGLWDAARKRIARHLG---HPVKLEIEPGRFLVAESGVLVAQVRAV 287

Query: 294 KKSADKTFVILDVAMNDFMRPTLYDAYHEINYIVNPAGDRLHIHADIV-----GPICETG 348
           K+   + FV++D   ND MRP +Y +YH I+ +   A  R    A  V     GP+CE+G
Sbjct: 288 KQMGSRHFVLVDAGFNDLMRPAMYGSYHHISVL--AADGRSLEEAPTVDTVVAGPLCESG 345

Query: 349 D-F------IALNRKIALPRPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMVNGSQFHII 401
           D F      +   R +   + GD L    TGAYGA  S  YNSR L+PE++ +  Q  +I
Sbjct: 346 DVFTQQEGGVVETRALPQVQVGDYLVFHDTGAYGASMSSNYNSRPLLPEVLFDNGQARLI 405

Query: 402 RPRMTFQELIELDSI 416
           R R T +EL+ L+ +
Sbjct: 406 RRRQTIEELLALELL 420


>gnl|CDD|181596 PRK08961, PRK08961, bifunctional aspartate kinase/diaminopimelate
           decarboxylase protein; Provisional.
          Length = 861

 Score =  216 bits (553), Expect = 7e-57
 Identities = 120/392 (30%), Positives = 187/392 (47%), Gaps = 31/392 (7%)

Query: 12  HAENVSLEKLAHVVQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTL 71
           HAE   L  L+    +P Y Y    +         A   +D    YA+KAN + A+++TL
Sbjct: 489 HAERARLLTLSDA-GSPCYVYHLPTVRARARAL-AALAAVDQRF-YAIKANPHPAILRTL 545

Query: 72  AHLGSGLDIVSEGELRRALAA-P-VPAERIVFSGVGKTIDEIDLALQSGIYCFNVESESE 129
              G G + VS GELRR     P +  ER++F+       E + A   G+    +++   
Sbjct: 546 EEEGFGFECVSIGELRRVFELFPELSPERVLFTPNFAPRAEYEAAFALGVT-VTLDNVEP 604

Query: 130 LKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYASTLP 189
           L+        L +   +  R++P      H+K+ TG KE KFG+   +I      A TL 
Sbjct: 605 LR----NWPELFRGREVWLRIDPGHGDGHHEKVRTGGKESKFGLSQTRIDEFVDLAKTL- 659

Query: 190 GVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHR 249
           G+ + G+  H+GS I+  E + +    L    ++       ++ ID+GGGLGI   +   
Sbjct: 660 GITVVGLHAHLGSGIETGEHWRRMADELASFARRFPD----VRTIDLGGGLGIPESAGDE 715

Query: 250 PPSSSDYASLIH----QYFGNLQCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILD 305
           P       + +     Q+      ++ +EPGR+LVA+ G+L+ +V  +K+      V L+
Sbjct: 716 PFDLDALDAGLAEVKAQH---PGYQLWIEPGRYLVAEAGVLLARVTQVKEKDGVRRVGLE 772

Query: 306 VAMNDFMRPTLYDAYHEINYIVNPAGDRLH----IHADIVGPICETGDFIALNRKIALPR 361
             MN  +RP LY AYHE   IVN +  RL       AD+VGPICE+ D +   R++    
Sbjct: 773 TGMNSLIRPALYGAYHE---IVNLS--RLDEPAAGTADVVGPICESSDVLGKRRRLPATA 827

Query: 362 PGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMV 393
            GD++ I   GAYG   S TYN R    E+++
Sbjct: 828 EGDVILIANAGAYGYSMSSTYNLREPAREVVL 859


>gnl|CDD|132143 TIGR03099, dCO2ase_PEP1, pyridoxal-dependent decarboxylase,
           exosortase system type 1 associated.  The sequences in
           this family contain the pyridoxal binding domain
           (pfam02784) and C-terminal sheet domain (pfam00278) of a
           family of Pyridoxal-dependent decarboxylases.
           Characterized enzymes in this family decarboxylate
           substrates such as ornithine, diaminopimelate and
           arginine. The genes of the family modeled here, with the
           exception of those observed in certain Burkholderia
           species, are all found in the context of
           exopolysaccharide biosynthesis loci containing the
           exosortase/PEP-CTERM protein sorting system. More
           specifically, these are characteristic of the type 1
           exosortase system represented by the Genome Property
           GenProp0652. The substrate of these enzymes may be a
           precursor of the carrier or linker which is hypothesized
           to release the PEP-CTERM protein from the exosortase
           enzyme. These enzymes are apparently most closely
           related to the diaminopimelate decarboxylase modeled by
           TIGR01048 which may suggest a similarity (or identity)
           of substrate.
          Length = 398

 Score =  188 bits (479), Expect = 2e-48
 Identities = 121/397 (30%), Positives = 179/397 (45%), Gaps = 45/397 (11%)

Query: 9   GSLHAENVSLEKLAHVV-QTPFYCYSTTAIEKNYLTFSNAF-DGMDTMVCYALKANSNQA 66
           G L    + L +LA     TPFY Y    + +       A  + +   + YA+KAN   A
Sbjct: 6   GCLCVGGIPLTELAARAGGTPFYAYDRGLVSERVAALRKALPEELA--IHYAVKANPMPA 63

Query: 67  VIKTLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVES 126
           ++  +A L  G D+ S GEL  AL        I F+G GKT  E+  AL +G+   NVES
Sbjct: 64  LLAHMAPLVDGFDVASAGELAVALDTGYDPGCISFAGPGKTDAELRRALAAGV-LINVES 122

Query: 127 ESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYAS 186
             EL  L   + +LG +A +A RVNPD        +  G    +FGI   Q+ +  A+  
Sbjct: 123 LRELNRLAALSEALGLRARVAVRVNPDFELKG-SGMKMGGGAKQFGIDAEQVPAALAFIK 181

Query: 187 TLPGVKISGVDMHIGSQ-IDQ---IESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGI 242
               +   G  +  GSQ ++    IE+  K   L   L     S    ++ I++GGG GI
Sbjct: 182 AA-DLDFQGFHIFAGSQNLNAEAIIEAQAKTLALALRLA---ESAPAPVRVINIGGGFGI 237

Query: 243 AYHSDHRPPSSSDYASLIHQYFGNL-----QCKIILEPGRFLVADVGILVTKVISIKKSA 297
            Y   + P   +   + +   F  L     + +I+LE GR+LV + GI V +VI  K S 
Sbjct: 238 PYFPGNPPLDLAPVGAALAALFARLRDALPEVEILLELGRYLVGEAGIYVCRVIDRKISR 297

Query: 298 DKTFVILDVAMNDFMRPTLYDAYHEI------------NY---IVNPAGDRLHIHADIVG 342
            +TF++ D  ++           H +            NY   I N  G  +   A IVG
Sbjct: 298 GETFLVTDGGLH-----------HHLSASGNFGQVIRRNYPVVIGNRIGGAVREIASIVG 346

Query: 343 PICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQS 379
           P+C   D +A    + +  PGDL+ I ++GAYGA  S
Sbjct: 347 PLCTPLDLLAEKGTLPVAEPGDLVVIFQSGAYGASAS 383


>gnl|CDD|162279 TIGR01273, speA, arginine decarboxylase, biosynthetic.  A distinct
           biodegradative form is also pyridoxal
           phosphate-dependent but is not similar in sequence.
          Length = 624

 Score = 86.2 bits (214), Expect = 2e-17
 Identities = 77/263 (29%), Positives = 118/263 (44%), Gaps = 33/263 (12%)

Query: 57  YALKANSNQAVIKTLAHLGS----GLDIVSEGELRRALA-APVPAERIVFSGVGKTIDEI 111
           Y +K N +++V++ +   G     GL+  S+ EL  A+A A  P   IV +G  K  + I
Sbjct: 95  YPIKVNQHRSVVEDIVAFGKGLNYGLEAGSKPELLAAMAYATKPGAPIVCNGY-KDREYI 153

Query: 112 DLALQSGIYCFNV----ESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKK 167
           +LAL       NV    E  SEL  + + A  LG K  +  R     +  + K  S+G +
Sbjct: 154 ELALIGRKLGHNVFIVIEKLSELDLVIEEAKKLGVKPKLGLRARL-ASKGSGKWASSGGE 212

Query: 168 EDKFGIPIHQIHS---LYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQL 224
           + KFG+   QI     L      L  +K+  +  HIGSQI  I+   K  +       +L
Sbjct: 213 KSKFGLSATQILEVVRLLEQNGLLDCLKL--LHFHIGSQISNIDDVKKGVREAARFYCEL 270

Query: 225 RSNGHNIQHIDVGGGLGIAYH-SDHRPPSSSDYASLIHQYFGNL------QCK------- 270
           R  G  I ++DVGGGLG+ Y  +      S +Y   + +Y  ++       C        
Sbjct: 271 RKLGAKITYVDVGGGLGVDYDGTSSSSDCSVNYG--LEEYAADVVQALREICDEKGVPHP 328

Query: 271 -IILEPGRFLVADVGILVTKVIS 292
            II E GR + A   +L+T V+ 
Sbjct: 329 VIITESGRAITAHHAVLITNVLG 351


>gnl|CDD|180035 PRK05354, PRK05354, arginine decarboxylase; Provisional.
          Length = 634

 Score = 61.7 bits (151), Expect = 4e-10
 Identities = 76/285 (26%), Positives = 117/285 (41%), Gaps = 79/285 (27%)

Query: 57  YALKANSNQAVIKTLAHLGS----GLDIVSEGELRRALA-APVPAERIVFSGVGKTIDEI 111
           Y +K N  + V++ +   G     GL+  S+ EL   LA A  P   IV +G  K  + I
Sbjct: 102 YPIKVNQQRRVVEEIVASGKPYNLGLEAGSKPELMAVLALAGDPGALIVCNGY-KDREYI 160

Query: 112 DLAL---QSGIYCFNV-ESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKIST--- 164
            LAL   + G   F V E  SEL+ + + A  LG K  +  R           ++++   
Sbjct: 161 RLALIGRKLGHKVFIVIEKLSELELILEEAKELGVKPRLGVRA----------RLASQGS 210

Query: 165 GKKED------KFGIPIHQIHSLYAYASTLPGVKISGVDM---------------HIGSQ 203
           GK +       KFG+   ++              +  V+                H+GSQ
Sbjct: 211 GKWQSSGGEKSKFGLSATEV--------------LEAVERLREAGLLDCLQLLHFHLGSQ 256

Query: 204 IDQIESFHKAFKLLRDLTQ---QLRSNGHNIQHIDVGGGLGIAYH-SDHRPPSS-----S 254
           I  I     A   +R+  +   +LR  G  IQ++DVGGGLG+ Y  +  +  SS      
Sbjct: 257 IANIRDIKTA---VREAARFYVELRKLGAPIQYLDVGGGLGVDYDGTRSQSDSSVNYSLQ 313

Query: 255 DYASLIHQYFGNLQCK--------IILEPGRFLVADVGILVTKVI 291
           +YA+ +      + C+        II E GR L A   +LV  V+
Sbjct: 314 EYANDVVYTLKEI-CEEHGVPHPTIISESGRALTAHHAVLVFNVL 357


>gnl|CDD|178058 PLN02439, PLN02439, arginine decarboxylase.
          Length = 559

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 66/277 (23%), Positives = 111/277 (40%), Gaps = 48/277 (17%)

Query: 57  YALKANSNQAVIKTLAHLGS----GLDIVSEGELRRALAA---PVPAERIVFSGVGKTID 109
           + +K N ++ +++ +   GS    GL+  S+ EL  A++      P   ++ +G  K  +
Sbjct: 37  FPVKCNQDRFLVEDIVKFGSPFRFGLEAGSKPELLLAMSCLCKGSPDAFLICNGY-KDAE 95

Query: 110 EIDLALQS---GIYCFNV-ESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTG 165
            + LAL +   G+    V E E EL  + + +  LG +  I  R       + H   ++G
Sbjct: 96  YVSLALLARKLGLNTVIVLEQEEELDLVIEASQRLGVRPVIGVRAKLRTKHSGHFGSTSG 155

Query: 166 KKEDKFGIPIHQIHSLYAYASTLPGVKISGVDM---------HIGSQIDQIESFHKAFKL 216
           +K  KFG+   +I  +          K+    M         HIGSQI            
Sbjct: 156 EK-GKFGLTATEIVRVVR--------KLRKEGMLDCLQLLHFHIGSQIPSTSLLKDGVSE 206

Query: 217 LRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSD---------YASLIHQYFGNL 267
              +  +L   G  ++ ID+GGGLGI Y        SSD         YA+ +     ++
Sbjct: 207 AAQIYCELVRLGAPMRVIDIGGGLGIDYDGSKS--GSSDMSVAYSLEEYANAVVAAVRDV 264

Query: 268 -------QCKIILEPGRFLVADVGILVTKVISIKKSA 297
                     I  E GR LV+   +L+ + +S  K  
Sbjct: 265 CDRKGVKHPVICSESGRALVSHHSVLIFEAVSASKRG 301


>gnl|CDD|162173 TIGR01047, nspC, carboxynorspermidine decarboxylase.  This protein
           is related to diaminopimelate decarboxylase. It is the
           last enzyme in norspermidine biosynthesis by an unusual
           pathway shown in Vibrio alginolyticus.
          Length = 380

 Score = 35.5 bits (82), Expect = 0.024
 Identities = 40/148 (27%), Positives = 61/148 (41%), Gaps = 21/148 (14%)

Query: 270 KIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMNDFMRPTLYDAYH-EINYIVN 328
           ++ILEPG  +    G LV  V+ I ++ +K   ILDV+    M  TL   Y   +    +
Sbjct: 228 QVILEPGEAIGWQTGFLVASVVDIVEN-EKKIAILDVSFEAHMPDTLEMPYRPSVLGASD 286

Query: 329 PAGDRLHIHAD--------IVGPICETGDFIALNRKIALPRP---GDLLYIEKTGAYGAV 377
           PA       +         + G  C  GD +    + A   P   GD L       Y  V
Sbjct: 287 PATRENEEISLKEGQFSYVLGGCTCLAGDVMG---EYAFDEPLKVGDKLVFLDMIHYTMV 343

Query: 378 QSGTYNSRLLIPEIMV---NGSQFHIIR 402
           ++ T+N  + +P +     NG +F  IR
Sbjct: 344 KNTTFNG-VKLPSLGCLRANG-EFQKIR 369


>gnl|CDD|168352 PRK06025, PRK06025, acetyl-CoA acetyltransferase; Provisional.
          Length = 417

 Score = 31.3 bits (71), Expect = 0.44
 Identities = 13/24 (54%), Positives = 16/24 (66%)

Query: 90  LAAPVPAERIVFSGVGKTIDEIDL 113
           L APVPA + V +  G T D+IDL
Sbjct: 314 LNAPVPAAKKVLAKAGLTKDDIDL 337


>gnl|CDD|151018 pfam10441, Urb2, Urb2/Npa2 family.  This family includes the Urb2
           protein from yeast that are involved in ribosome
           biogenesis.
          Length = 220

 Score = 29.6 bits (67), Expect = 1.6
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 104 VGKTID-EIDLALQSGIYC-FNVESESELKTLN 134
           +G     E+  AL  GIY   +V SESEL+ LN
Sbjct: 162 LGVGFPPEVKEALTPGIYSILDVLSESELQALN 194


>gnl|CDD|181123 PRK07801, PRK07801, acetyl-CoA acetyltransferase; Provisional.
          Length = 382

 Score = 29.3 bits (66), Expect = 1.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 90  LAAPVPAERIVFSGVGKTIDEIDL 113
           L AP+PA R      G +ID+ID+
Sbjct: 279 LTAPIPATRYALEKTGLSIDDIDV 302


>gnl|CDD|179825 PRK04326, PRK04326, methionine synthase; Provisional.
          Length = 330

 Score = 29.2 bits (66), Expect = 2.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 73 HLGSGLDIVSEGELRRALAAPVPAERI 99
          H  +G+DI  +GE+RR       AERI
Sbjct: 55 HERAGVDIPVDGEMRREEMVEYFAERI 81


>gnl|CDD|183871 PRK13146, hisH, imidazole glycerol phosphate synthase subunit HisH;
           Provisional.
          Length = 209

 Score = 28.6 bits (65), Expect = 3.4
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 4/39 (10%)

Query: 67  VIKTLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGVG 105
             K L   G+G D+V   +     AA    +R+V  GVG
Sbjct: 17  AAKALERAGAGADVVVTADPDAVAAA----DRVVLPGVG 51


>gnl|CDD|178827 PRK00053, alr, alanine racemase; Reviewed.
          Length = 363

 Score = 28.2 bits (64), Expect = 4.1
 Identities = 35/189 (18%), Positives = 68/189 (35%), Gaps = 37/189 (19%)

Query: 50  GMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEG-ELRRA-LAAPVPAERIVFSGVGKT 107
           G   +    L+A ++   + TL           E  ELR A + AP+    ++  G    
Sbjct: 42  GAVEVAKTLLEAGADGFGVATL----------EEALELREAGITAPI----LILGGFF-P 86

Query: 108 IDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKK 167
            +++ L +   +    V S  +L+ L +    LGK   +            H KI TG  
Sbjct: 87  AEDLPLIIAYNLT-TAVHSLEQLEALEK--AELGKPLKV------------HLKIDTGM- 130

Query: 168 EDKFGIPIHQIHSLYAYASTLPGVKISGVDMHIGSQIDQIES--FHKAFKLLRDLTQQLR 225
             + G+   +  +        P V++ G+  H  +  D+ ++    +           L 
Sbjct: 131 -HRLGVRPEEAEAALERLLACPNVRLEGIFSHFATA-DEPDNSYTEQQLNRFEAALAGLP 188

Query: 226 SNGHNIQHI 234
             G  ++H+
Sbjct: 189 GKGKPLRHL 197


>gnl|CDD|165268 PHA02962, PHA02962, hypothetical protein; Provisional.
          Length = 722

 Score = 28.0 bits (62), Expect = 5.4
 Identities = 15/63 (23%), Positives = 26/63 (41%)

Query: 142 KKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYASTLPGVKISGVDMHIG 201
           KKA     +  + N + H++         F IPI +I  L  + + +P +        I 
Sbjct: 435 KKARSFLSIKDNYNIDFHEEFDIIDLPRSFNIPIKEIADLKEFNNIIPFISDKSYKFKIA 494

Query: 202 SQI 204
           SQ+
Sbjct: 495 SQL 497


>gnl|CDD|181272 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed.
          Length = 614

 Score = 27.9 bits (63), Expect = 5.6
 Identities = 25/95 (26%), Positives = 29/95 (30%), Gaps = 26/95 (27%)

Query: 77  GLDIVSEGEL-RRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQ 135
           GL    +G    RALAA VPA+  V +  G                      + L T   
Sbjct: 148 GLVFADDGAAFARALAAVVPADVEVVAVRGAVPGRAATPF-----------AALLATPPT 196

Query: 136 RAVSLGKKAPIAFRVNPDINANTHKKI-----STG 165
            AV           V PD    T  K      STG
Sbjct: 197 AAV-----DAAHAAVGPD----TIAKFLFTSGSTG 222


>gnl|CDD|181315 PRK08242, PRK08242, acetyl-CoA acetyltransferase; Validated.
          Length = 402

 Score = 27.5 bits (62), Expect = 6.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 90  LAAPVPAERIVFSGVGKTIDEIDL 113
           L  PVPA R   +  G T+D+IDL
Sbjct: 299 LTGPVPATRKALAKAGLTVDDIDL 322


>gnl|CDD|150823 pfam10208, Armet, Degradation arginine-rich protein for
          mis-folding.  This is a family of small proteins of
          approximately 170 residues which contain four
          di-sulfide bridges that are highly conserved from
          nematodes to humans. Armet is a soluble protein
          resident in the endoplasmic reticulum and induced by ER
          stress. It appears to be involved with dealing with
          mis-folded proteins in the ER, thus in quality control
          of ER stress.
          Length = 154

 Score = 27.4 bits (61), Expect = 7.1
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 13/68 (19%)

Query: 32 YSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEGELRRALA 91
          +S   IEK  + F     G +   CY L A S+ A  K               E+ + L+
Sbjct: 23 FSPDKIEKELIKFCKDTKGKENRFCYYLGALSDSAT-KIT------------NEVSKPLS 69

Query: 92 APVPAERI 99
            +P E+I
Sbjct: 70 WHMPVEKI 77


>gnl|CDD|180165 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional.
          Length = 342

 Score = 27.5 bits (62), Expect = 7.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)

Query: 237 GGGLGIAYHSDHR 249
           GGG+GI+ H  HR
Sbjct: 113 GGGVGISAHGSHR 125


>gnl|CDD|183195 PRK11557, PRK11557, putative DNA-binding transcriptional regulator;
           Provisional.
          Length = 278

 Score = 27.0 bits (60), Expect = 9.3
 Identities = 12/48 (25%), Positives = 24/48 (50%)

Query: 58  ALKANSNQAVIKTLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGVG 105
            L+    + + +  A + + LD+ SE +L   +     A RI+ +G+G
Sbjct: 90  PLRLVGEKLIKENTAAMRATLDVNSEEKLHECVTMLRSARRIILTGIG 137


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.320    0.137    0.397 

Gapped
Lambda     K      H
   0.267   0.0669    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,046,609
Number of extensions: 459912
Number of successful extensions: 883
Number of sequences better than 10.0: 1
Number of HSP's gapped: 855
Number of HSP's successfully gapped: 28
Length of query: 431
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 335
Effective length of database: 3,920,105
Effective search space: 1313235175
Effective search space used: 1313235175
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.6 bits)