RPSBLAST alignment of GI: 254780371 and protein with PDBid: 2qgh

>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A* Length = 425
 Score =  291 bits (745), Expect = 2e-79
 Identities = 162/399 (40%), Positives = 236/399 (59%), Gaps = 2/399 (0%)

Query: 16  VSLEKLAHVVQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLG 75
            + E+L    +TPFY Y    I++ +L +  AF G  +++CYALKANSN +++  LAHL 
Sbjct: 22  FNYEELFQTHKTPFYLYDFDKIKQAFLNYKEAFKGRKSLICYALKANSNLSILSLLAHLE 81

Query: 76  SGLDIVSEGELRRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQ 135
           SG D VS GE++RAL A +   RIVFSGVGK+  EI+ AL+  I   NVES  ELKT+  
Sbjct: 82  SGADCVSIGEIQRALKAGIKPYRIVFSGVGKSAFEIEQALKLNILFLNVESFMELKTIET 141

Query: 136 RAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYASTLPGVKISG 195
            A SLG KA I+ R+NP+I+A TH  ISTG KE+KFG+   +   ++ +A     ++   
Sbjct: 142 IAQSLGIKARISIRINPNIDAKTHPYISTGLKENKFGVGEKEALEMFLWAKKSAFLEPVS 201

Query: 196 VDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSD 255
           V  HIGSQ+  +E   +A + +  + + L + G +++  DVGGG+G+  + +       D
Sbjct: 202 VHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGIDLRFFDVGGGIGV-SYENEETIKLYD 260

Query: 256 YASLIHQYFGNLQCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMNDFMRPT 315
           YA  I      L   II EPGR +VA+ G L+T+V+  KK+ +K FVI+D  MNDF+RP+
Sbjct: 261 YAQGILNALQGLDLTIICEPGRSIVAESGELITQVLYEKKAQNKRFVIVDAGMNDFLRPS 320

Query: 316 LYDAYHEINYIVNPAGDRLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYG 375
           LY A H I  I    G  +    D+VGP+CE+ D    +  +    PGD + IEK GAYG
Sbjct: 321 LYHAKHAIRVITPSKGREISP-CDVVGPVCESSDTFLKDAHLPELEPGDKIAIEKVGAYG 379

Query: 376 AVQSGTYNSRLLIPEIMVNGSQFHIIRPRMTFQELIELD 414
           +  +  YNSR  + E+ +   +  +IR R   ++L  L+
Sbjct: 380 SSMASQYNSRPKLLELALEDHKIRVIRKREALEDLWRLE 418