HHsearch alignment for GI: 254780372 and conserved domain: PRK12430
>PRK12430 type III secretion system protein; Provisional.
Probab=100.00 E-value=0 Score=636.12 Aligned_cols=238 Identities=42% Similarity=0.741 Sum_probs=223.6
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 99999999831231023222212468888751248999999999999999999999748999999999995302022433
Q gi|254780372|r 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPP 83 (246)
Q Consensus 4 ~~~~~~~~~~~~~a~aq~~~~~~~~~~~~~~~~~~~iqll~llt~LsL~P~ilim~TsFtrIvIVLsilRnALG~QQ~PP 83 (246)
T Consensus 140 ~~~~~~~~~~~p~~~~~~p~~~~~~~~~g~q~~S~~iQ~Li~lT~LsllPaiLiM~TSFtRIvIVLslLRnALG~QQ~PP 219 (379)
T PRK12430 140 IIPLCFLLLFCPSAYADIPGVTSHILSDGSQTWSIPVQTLVFLTSLTFLPAFLLMMTSFTRIVIVFGLLRNALGTPYAPP 219 (379)
T ss_pred HHHHHHHHHHCHHHHHCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 79799999967497853885215305899801230899999999999999999998520899999999987307688986
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 79999999999999878999999997508433488799999999988999999962998999999985065677654467
Q gi|254780372|r 84 NLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163 (246)
Q Consensus 84 N~Vl~gLALfLT~fVM~Pv~~~i~~~a~~P~~~~~i~~~~a~~~~~~Plr~FM~~~t~~~dl~~f~~~a~~~~~~~~~~~ 163 (246)
T Consensus 220 NqVL~GLALfLT~FVM~PV~~~i~~~a~~Py~~~~i~~~eA~~~a~~Plr~FMlkqtr~~dl~lF~~la~~~~~~----~ 295 (379)
T PRK12430 220 NQILLGLALFLTFFIMSPTFDKIYKDAYLPFSQEKINMDTAIVKGAKPLKKFMLNQTRQVDLELFSKLAHISSYK----N 295 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCC----C
T ss_conf 899999999999999989999999975185435885899999988899999998717889999999961899879----8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 34586689989998999999999999999999999999999999975554273489999999999997428999999987
Q gi|254780372|r 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 (246)
Q Consensus 164 ~~~~~~~vLiPAF~iSEL~~aF~iGfliylPFlvIDlvVa~iLmamGMmMl~P~~iSlPfKlllFV~vdGW~ll~~~Lv~ 243 (246)
T Consensus 296 ~~dvpl~vLiPAFviSELktAFqIGFLIyLPFLVIDLVVASILMAMGMMMlpP~~ISLPFKLLLFVlVDGW~Lli~sLv~ 375 (379)
T PRK12430 296 KEEIPMRILLPSFITSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPSTISLPFKLMLFVLVDGWQLLITSLTH 375 (379)
T ss_pred CCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHEECCHHHHHHHHHH
T ss_conf 22377213197899999999999999999999999999999999750533580465553676664133729999999998
Q ss_pred HH
Q ss_conf 51
Q gi|254780372|r 244 SF 245 (246)
Q Consensus 244 sy 245 (246)
T Consensus 376 SF 377 (379)
T PRK12430 376 SF 377 (379)
T ss_pred HH
T ss_conf 74