HHsearch alignment for GI: 254780372 and conserved domain: PRK12783
>PRK12783 fliP flagellar biosynthesis protein FliP; Reviewed.
Probab=100.00 E-value=0 Score=635.42 Aligned_cols=233 Identities=55% Similarity=0.927 Sum_probs=215.8
Q ss_pred HHHHHHCCCCCC--C-CCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 831231023222--2-124-688887512489999999999999999999997489999999999953020224337999
Q gi|254780372|r 12 VTPELVFAKSSL--H-DVM-NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87 (246)
Q Consensus 12 ~~~~~a~aq~~~--~-~~~-~~~~~~~~~~~~iqll~llt~LsL~P~ilim~TsFtrIvIVLsilRnALG~QQ~PPN~Vl 87 (246)
T Consensus 16 l~~~~~la~~~~~~p~~~~~~~~~~~~~~~~~lqil~llTvLsl~P~ilim~TsFtrivIVLsllR~ALG~QQ~PPN~VL 95 (252)
T PRK12783 16 LLASAALAQGATGVPDLDALLPPGNGAASGRIIQLVALLTVLSLAPGLLVMVTSFTRFAVALSFLRSGLGLQSTPANLFL 95 (252)
T ss_pred HHHHHHHHCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 86358986435699862100499998026599999999999999999999998569999999999987276879908999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999999998789999999975084334887999999999889999999629989999999850656776544673458
Q gi|254780372|r 88 ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHI 167 (246)
Q Consensus 88 ~gLALfLT~fVM~Pv~~~i~~~a~~P~~~~~i~~~~a~~~~~~Plr~FM~~~t~~~dl~~f~~~a~~~~~~~~~~~~~~~ 167 (246)
T Consensus 96 ~gLALfLT~FVM~Pv~~~i~~~a~~p~~~~~i~~~~a~~~~~~Plr~FM~~~tr~~dl~~F~~~a~~~~p~~~--~~~~~ 173 (252)
T PRK12783 96 VSLALFMTFYVMAPTFDRAWNEGVQPLMENRISEEEAFGKIVDPFREFMLAHVRDKDLQTFEDLASRSFPKAE--AGEKI 173 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCC--CCCCC
T ss_conf 9999999999998999999987228632456679999999999999999985899999999998602378987--64568
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 6689989998999999999999999999999999999999975554273489999999999997428999999987519
Q gi|254780372|r 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 (246)
Q Consensus 168 ~~~vLiPAF~iSEL~~aF~iGfliylPFlvIDlvVa~iLmamGMmMl~P~~iSlPfKlllFV~vdGW~ll~~~Lv~sy~ 246 (246)
T Consensus 174 ~l~vLiPAF~iSELk~AF~IGFliyLPFlvIDLVVasiLmaMGMmMlpP~~ISLPfKLlLFVlvDGW~Ll~~~Lv~Sf~ 252 (252)
T PRK12783 174 DLRILIPAFMISELRRGFEIGFLIVLPFLVIDMIVATLVMSMGMMMLPPTVISLPFKVLFFVLIDGWNLLVSGLVRSFF 252 (252)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_conf 7112148999999999999999999999999999999999810100481676556788898621609999999988519