Query gi|254780372|ref|YP_003064785.1| flagellar biosynthesis protein FliP [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 246
No_of_seqs 123 out of 725
Neff 4.7
Searched_HMMs 33803
Date Wed Jun 1 12:42:14 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780372.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3cnh_A Hydrolase family prote 55.9 12 0.00037 16.6 3.9 40 102-141 22-70 (70)
2 >2gha_A Maltose ABC transporte 53.6 9.9 0.00029 17.2 2.5 47 88-135 37-88 (98)
3 >3dm0_A Maltose-binding peripl 51.3 15 0.00043 16.2 3.2 46 88-133 33-84 (86)
4 >3f5f_A Maltose-binding peripl 25.3 39 0.0012 13.6 2.5 34 99-133 142-175 (189)
5 >2c82_A 1-deoxy-D-xylulose 5-p 20.9 48 0.0014 13.1 2.4 38 99-136 2-39 (93)
6 >1eu8_A Trehalose/maltose bind 20.5 49 0.0014 13.1 3.2 38 101-138 68-105 (107)
7 >1r0k_A 1-deoxy-D-xylulose 5-p 16.6 60 0.0018 12.5 2.2 33 99-131 2-34 (69)
8 >2f6m_A Suppressor protein STP 15.9 25 0.00075 14.8 -0.8 51 99-150 1-53 (65)
9 >2ve8_A FTSK, DNA translocase 15.7 37 0.0011 13.8 0.0 27 164-190 6-39 (73)
10 >1rh5_B Preprotein translocase 11.1 86 0.0026 11.6 2.8 16 187-202 51-66 (74)
No 1
>>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of haloacid dehalogenase- like superfamily; HET: MSE PG4; 1.66A {Deinococcus radiodurans R1} (A:17-86)
Probab=55.94 E-value=12 Score=16.65 Aligned_cols=40 Identities=13% Similarity=0.204 Sum_probs=31.0
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHH---------HHHHHHHHHHHCC
Q ss_conf 999999975084334887999999999---------8899999996299
Q gi|254780372|r 102 TLDRSIEMGIQPLMNNQITETTAIQRV---------AEPFWVFMRNNTR 141 (246)
Q Consensus 102 v~~~i~~~a~~P~~~~~i~~~~a~~~~---------~~Plr~FM~~~t~ 141 (246)
-+.+-.+-...+|..|+++..+-+++. .+-+|+||..+++
T Consensus 22 e~~~RH~l~fd~yE~GkitLdeYLdr~VFy~~R~Ft~~~Fk~fM~~qSq 70 (70)
T 3cnh_A 22 DFTERHRLAAPELELGRXTLAEYLEQVVFYQPRDFTPEDFRAVXEEQSQ 70 (70)
T ss_dssp HHHHHHHHHHHHHHTTSSCHHHHHHHHTTTSCCSSCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999855788751463888899999987555469999999997187
No 2
>>2gha_A Maltose ABC transporter, periplasmic maltose- binding protein; periplasmic binding protein, MBP, maltotriose, sugar binding protein; HET: MLR; 1.60A {Thermotoga maritima MSB8} PDB: 2ghb_A 2fnc_A* (A:155-206,A:337-382)
Probab=53.62 E-value=9.9 Score=17.22 Aligned_cols=47 Identities=13% Similarity=0.130 Sum_probs=34.1
Q ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9999999999-----87899999999750843348879999999998899999
Q gi|254780372|r 88 ISLALFMTFY-----VMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVF 135 (246)
Q Consensus 88 ~gLALfLT~f-----VM~Pv~~~i~~~a~~P~~~~~i~~~~a~~~~~~Plr~F 135 (246)
-|+..+-.++ -|+.||..+ .+|++-..+++.+.++|++.+.+-+|+=
T Consensus 37 kg~~~i~~l~~~g~~pM~~VW~p~-~~Al~~i~~gk~~p~~al~~AV~~Ik~~ 88 (98)
T 2gha_A 37 KGVKLLKRLVDEGILDMAAVWAAM-NDALNLVVNGKATVEEALKNAVERIKAQ 88 (98)
T ss_dssp HHHHHHHHHHHTTSSCGGGTHHHH-HHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 999999987650267889999999-9999999859899999999999999999
No 3
>>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} (A:158-205,A:334-371)
Probab=51.30 E-value=15 Score=16.19 Aligned_cols=46 Identities=11% Similarity=0.112 Sum_probs=30.2
Q ss_pred HHHHHHHHHH---HHHHHHHHHHH---HHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9999999999---87899999999---7508433488799999999988999
Q gi|254780372|r 88 ISLALFMTFY---VMSPTLDRSIE---MGIQPLMNNQITETTAIQRVAEPFW 133 (246)
Q Consensus 88 ~gLALfLT~f---VM~Pv~~~i~~---~a~~P~~~~~i~~~~a~~~~~~Plr 133 (246)
-|+..+-.++ ++.|-..+.|. +|++-..+++-+.++|++.+.+-+|
T Consensus 33 kg~~~i~~l~~~g~~pPeM~~vW~~~~~Al~~i~~gkq~~~~AL~~A~~~I~ 84 (86)
T 3dm0_A 33 AGLTFLVDLIKNKHMNPQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAA 84 (86)
T ss_dssp HHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 9999999999738888548899999999999987530033211121222223
No 4
>>3f5f_A Maltose-binding periplasmic protein, heparan sulfate 2-O-sulfotransferase 1; maltose binding protein, fusion, heparan sulfate biosynthesis; HET: GLC A3P; 2.65A {Escherichia coli k-12} (A:113-251,A:334-371,A:647-658)
Probab=25.34 E-value=39 Score=13.63 Aligned_cols=34 Identities=12% Similarity=-0.020 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 78999999997508433488799999999988999
Q gi|254780372|r 99 MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133 (246)
Q Consensus 99 M~Pv~~~i~~~a~~P~~~~~i~~~~a~~~~~~Plr 133 (246)
|+.+|..+ ++|++-..+|+-+.++|++.+.+-+|
T Consensus 142 m~~~w~~~-~~a~~~~~~~~~~~~~a~~~~~~~~~ 175 (189)
T 3f5f_A 142 MSAFWYAV-RTAVINAASGRQTVDAALAAAQTNAA 175 (189)
T ss_dssp HHHHHHHH-HHHHHHHHTTSSCHHHHHHHHHHHTT
T ss_pred HHHHHHHH-HHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 89999999-99999998398999999999999998
No 5
>>2c82_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; RV2870C, DOXP/MEP pathway, oxidoreductase, isoprene biosynthesis, metal-binding; 1.9A {Mycobacterium tuberculosis} PDB: 2jd1_A* 2jcv_A* 2jcz_A* 2jd2_A 2jcx_A* 2jcy_A 2jd0_A* (A:321-413)
Probab=20.92 E-value=48 Score=13.10 Aligned_cols=38 Identities=11% Similarity=0.132 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 78999999997508433488799999999988999999
Q gi|254780372|r 99 MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 (246)
Q Consensus 99 M~Pv~~~i~~~a~~P~~~~~i~~~~a~~~~~~Plr~FM 136 (246)
|.-|++.++|.+++-+.+|+|+..+-.+-..+-+.+|=
T Consensus 2 ~p~vlNAANE~AV~~FL~gkI~F~dI~~iVe~vLe~~~ 39 (93)
T 2c82_A 2 MTAVYNAANEEAAAAFLAGRIGFPAIVGIIADVLHAAD 39 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCG
T ss_pred HHEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf 30885658799999999589986889999999998562
No 6
>>1eu8_A Trehalose/maltose binding protein; protein-carbohydrate complex, MBP 2 fold, ABC transporter fold, thermophilic protein; HET: TRE; 1.90A {Thermococcus litoralis} (A:175-230,A:359-409)
Probab=20.53 E-value=49 Score=13.05 Aligned_cols=38 Identities=13% Similarity=0.275 Sum_probs=26.3
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999750843348879999999998899999996
Q gi|254780372|r 101 PTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 (246)
Q Consensus 101 Pv~~~i~~~a~~P~~~~~i~~~~a~~~~~~Plr~FM~~ 138 (246)
|-..++..++++--..|+.+.++|++.+..-+++-|.+
T Consensus 68 ~~is~~l~~~i~~al~G~~tpeeAl~~a~~~i~~il~~ 105 (107)
T 1eu8_A 68 PQLSEIIQKYVNSALAGKISPQEALDKAQKEAEELVKQ 105 (107)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999859999999999999999999995
No 7
>>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} (A:320-388)
Probab=16.63 E-value=60 Score=12.51 Aligned_cols=33 Identities=9% Similarity=0.211 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 789999999975084334887999999999889
Q gi|254780372|r 99 MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131 (246)
Q Consensus 99 M~Pv~~~i~~~a~~P~~~~~i~~~~a~~~~~~P 131 (246)
|..|++.++|.+++-..+|+|+..+-.+-...-
T Consensus 2 ~~~vlNaANE~av~~FL~~kI~F~~I~~ii~~~ 34 (69)
T 1r0k_A 2 RPAVMNAANEIAVAAFLDKKIGFLDIAKIVEKT 34 (69)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHHH
T ss_pred CEEEEEHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 128966778999999995899857899999999
No 8
>>2f6m_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosomes, trafficking complex, vacuole protein sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} (A:)
Probab=15.89 E-value=25 Score=14.77 Aligned_cols=51 Identities=18% Similarity=0.256 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHC-CCCCCCCC-CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 7899999999750-84334887-9999999998899999996299899999998
Q gi|254780372|r 99 MSPTLDRSIEMGI-QPLMNNQI-TETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 (246)
Q Consensus 99 M~Pv~~~i~~~a~-~P~~~~~i-~~~~a~~~~~~Plr~FM~~~t~~~dl~~f~~ 150 (246)
+.|+.+|+++-.. +--.+..| ..++|++++.-++-.|+ ||+|.=.++.|..
T Consensus 1 ~~~l~~Qll~l~Aed~AieDaiy~L~~aL~~g~I~~d~~l-K~vR~LaReQF~~ 53 (65)
T 2f6m_A 1 MTDGLNQLYNLVAQDYALTDTIEALSRMLHRGTIPLDTFV-KQGRELARQQFLV 53 (65)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHH-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH-HHHHHHHHHHHHH
T ss_conf 9708999999998998789999999999986986799999-9999999999999
No 9
>>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} (A:)
Probab=15.70 E-value=37 Score=13.75 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=18.9
Q ss_pred CCCCCHHHHHHHHHH-------HHHHHHHHHHHH
Q ss_conf 345866899899989-------999999999999
Q gi|254780372|r 164 NDHIEYRILIPSFMI-------SELRRSFEIGFL 190 (246)
Q Consensus 164 ~~~~~~~vLiPAF~i-------SEL~~aF~iGfl 190 (246)
.+++|++--+-+|++ |-|++.|+|||-
T Consensus 6 ~~~D~l~~~a~~~V~~~~~~S~S~lQR~lrIGyn 39 (73)
T 2ve8_A 6 SEDDPLYDEAVRFVTESRRASISAVQRKLKIGYN 39 (73)
T ss_dssp -CCCTTHHHHHHHHHHHCCCCHHHHHHHHTCCHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCH
T ss_conf 6555899999999998185348999999701524
No 10
>>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} (B:)
Probab=11.11 E-value=86 Score=11.55 Aligned_cols=16 Identities=38% Similarity=0.671 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999
Q gi|254780372|r 187 IGFLIILPFLIIDMIV 202 (246)
Q Consensus 187 iGfliylPFlvIDlvV 202 (246)
|||.+|+.|+-|.=++
T Consensus 51 IGf~Ikli~ipi~~ii 66 (74)
T 1rh5_B 51 IGYIIHVPATYIKGIL 66 (74)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC
T ss_conf 9999999998732556
Done!