BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780372|ref|YP_003064785.1| flagellar biosynthesis protein FliP [Candidatus Liberibacter asiaticus str. psy62] (246 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780372|ref|YP_003064785.1| flagellar biosynthesis protein FliP [Candidatus Liberibacter asiaticus str. psy62] gi|254040049|gb|ACT56845.1| flagellar biosynthesis protein FliP [Candidatus Liberibacter asiaticus str. psy62] Length = 246 Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust. Identities = 246/246 (100%), Positives = 246/246 (100%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT Sbjct: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT Sbjct: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE Sbjct: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN Sbjct: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 Query: 241 LVKSFI 246 LVKSFI Sbjct: 241 LVKSFI 246 >gi|315121841|ref|YP_004062330.1| flagellar biosynthesis protein FliP [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495243|gb|ADR51842.1| flagellar biosynthesis protein FliP [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 246 Score = 434 bits (1117), Expect = e-120, Method: Compositional matrix adjust. Identities = 211/246 (85%), Positives = 232/246 (94%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 MIRY FF F V PE VFA+SSLHD+M IP +LS+STWIVRTFG+FTILSI PILLIMVT Sbjct: 1 MIRYLFFGFFFVVPESVFAQSSLHDIMEIPPNLSVSTWIVRTFGLFTILSIVPILLIMVT 60 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 CFPRFIIVFSILRTGMGMGS+PPNLVIISLALFMTFYVMSPTLDRSIEMG+QPL++N+IT Sbjct: 61 CFPRFIIVFSILRTGMGMGSIPPNLVIISLALFMTFYVMSPTLDRSIEMGVQPLISNKIT 120 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 ET AI+R+AEPFW+FM+NNTREKDL LFM+MA S+H+NTDI K+DHIEYRILIPSFMISE Sbjct: 121 ETVAIKRIAEPFWIFMKNNTREKDLFLFMEMAKSTHKNTDIKKDDHIEYRILIPSFMISE 180 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK+IFFVLIDGW LLVEN Sbjct: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKIIFFVLIDGWGLLVEN 240 Query: 241 LVKSFI 246 LV+SF+ Sbjct: 241 LVRSFV 246 >gi|86356318|ref|YP_468210.1| flagellar biosynthesis protein FliP [Rhizobium etli CFN 42] gi|86280420|gb|ABC89483.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CFN 42] Length = 245 Score = 326 bits (836), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 154/246 (62%), Positives = 200/246 (81%), Gaps = 3/246 (1%) Query: 1 MIRY-CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 MIR+ F A + PEL A+ D++N+P D S++ WI+RTFG+ T+LS+AP +LIMV Sbjct: 1 MIRFIVFLAAMMAVPELAVAQQLPTDLLNVPVDGSVAAWIIRTFGLLTVLSVAPGILIMV 60 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T FPRF+I FSILR+GMG+ S P N++++SL+LFMTFYVMSPT D++ + G+QPL+ NQI Sbjct: 61 TSFPRFVIAFSILRSGMGLSSTPSNMILLSLSLFMTFYVMSPTFDQAWQNGVQPLLANQI 120 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 ET A+QR+AEPF FM NTR+KDL+LF+D+A R +I D I+YR+LIP+FMIS Sbjct: 121 NETEAVQRIAEPFRTFMAANTRDKDLALFVDLAR--ERGQNIQTTDPIDYRVLIPAFMIS 178 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 E+RR FEIGFL++LPFL+ID+IVATI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV Sbjct: 179 EIRRGFEIGFLVVLPFLVIDLIVATITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVG 238 Query: 240 NLVKSF 245 +LV+SF Sbjct: 239 SLVRSF 244 >gi|116250488|ref|YP_766326.1| flagellar biosynthesis protein FliP [Rhizobium leguminosarum bv. viciae 3841] gi|241203112|ref|YP_002974208.1| flagellar biosynthesis protein FliP [Rhizobium leguminosarum bv. trifolii WSM1325] gi|115255136|emb|CAK06210.1| putative flagellar biosynthetic protein FliP [Rhizobium leguminosarum bv. viciae 3841] gi|240857002|gb|ACS54669.1| flagellar biosynthetic protein FliP [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 245 Score = 326 bits (835), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 156/246 (63%), Positives = 199/246 (80%), Gaps = 3/246 (1%) Query: 1 MIRY-CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 MIR F A + PEL A+ D++N+P D S++ WI+RTFG+ TILS+AP +LIMV Sbjct: 1 MIRLIVFLAAMMAVPELAVAQQLPTDLLNVPVDGSVAAWIIRTFGLLTILSVAPGILIMV 60 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T FPRFII FSILR+GMG+ S P N++++SL+LFMTFYVMSPT D++ + G+QPL+ NQI Sbjct: 61 TSFPRFIIAFSILRSGMGLSSTPSNMILLSLSLFMTFYVMSPTFDQAWQNGVQPLLANQI 120 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 ET A+QR+AEPF FM NTR+KDL+LF+D+A R +I D I+YR+LIP+FMIS Sbjct: 121 NETEAVQRIAEPFRTFMAANTRDKDLALFVDLAR--ERGQNIQTTDPIDYRVLIPAFMIS 178 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 E+RR FEIGFL++LPFL+ID+IVATI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV Sbjct: 179 EIRRGFEIGFLVVLPFLVIDLIVATITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVG 238 Query: 240 NLVKSF 245 +LV+SF Sbjct: 239 SLVRSF 244 >gi|190890369|ref|YP_001976911.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CIAT 652] gi|190695648|gb|ACE89733.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CIAT 652] gi|327193042|gb|EGE59954.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CNPAF512] Length = 245 Score = 325 bits (834), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 154/246 (62%), Positives = 200/246 (81%), Gaps = 3/246 (1%) Query: 1 MIRYC-FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 MIR+ F A + PEL A+ D++N+P D S++ WI+RTFG+ T+LS+AP +LIMV Sbjct: 1 MIRFIIFLAAMMAVPELAVAQQLPTDLLNVPVDGSVAAWIIRTFGLLTVLSVAPGILIMV 60 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T FPRF+I FSILR+GMG+ S P N++++SL+LFMTFYVMSPT D++ + G+QPL+ NQI Sbjct: 61 TSFPRFVIAFSILRSGMGISSTPSNMILLSLSLFMTFYVMSPTFDQAWQNGVQPLLANQI 120 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 ET A+QR+AEPF FM NTR+KDL+LF+D+A R +I D I+YR+LIP+FMIS Sbjct: 121 NETEAVQRIAEPFRTFMAANTRDKDLALFVDLAR--ERGQNIQTTDPIDYRVLIPAFMIS 178 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 E+RR FEIGFL++LPFL+ID+IVATI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV Sbjct: 179 EIRRGFEIGFLVVLPFLVIDLIVATITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVG 238 Query: 240 NLVKSF 245 +LV+SF Sbjct: 239 SLVRSF 244 >gi|209547934|ref|YP_002279851.1| flagellar biosynthesis protein FliP [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533690|gb|ACI53625.1| flagellar biosynthetic protein FliP [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 245 Score = 325 bits (832), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 156/246 (63%), Positives = 198/246 (80%), Gaps = 3/246 (1%) Query: 1 MIRY-CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 MIR F A + PEL A+ D++N+P D S++ WI+RTFG+ TILS+AP +LIMV Sbjct: 1 MIRLIVFLAAMMAVPELAVAQQLPTDLLNVPVDGSVAAWIIRTFGLLTILSVAPGILIMV 60 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T FPRFII FSILR+GMG+ S P N++++SL+LFMTFYVMSPT D++ + G+QPL+ NQI Sbjct: 61 TSFPRFIIAFSILRSGMGLSSTPSNMILLSLSLFMTFYVMSPTFDQAWQNGVQPLLANQI 120 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 ET A+QR+AEPF FM NTR+KDL+LF+D+A R I D I+YR+LIP+FMIS Sbjct: 121 NETEAVQRIAEPFRTFMAANTRDKDLALFVDLAR--ERGQTIQTTDPIDYRVLIPAFMIS 178 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 E+RR FEIGFL++LPFL+ID+IVATI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV Sbjct: 179 EIRRGFEIGFLVVLPFLVIDLIVATITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVG 238 Query: 240 NLVKSF 245 +LV+SF Sbjct: 239 SLVRSF 244 >gi|218460348|ref|ZP_03500439.1| flagellar biosynthesis protein FliP [Rhizobium etli Kim 5] Length = 245 Score = 324 bits (831), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 154/246 (62%), Positives = 199/246 (80%), Gaps = 3/246 (1%) Query: 1 MIRYC-FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 MIR+ F + PEL A+ D++N+P D S++ WI+RTFG+ TILS+AP +LIMV Sbjct: 1 MIRFIIFLTAMMAVPELAVAQQLPTDLLNVPVDGSVAAWIIRTFGLLTILSVAPGILIMV 60 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T FPRF+I FSILR+GMG+ S P N++++SL+LFMTFYVMSPT D++ + G+QPL+ NQI Sbjct: 61 TSFPRFVIAFSILRSGMGLSSTPSNMILLSLSLFMTFYVMSPTFDQAWQSGVQPLLANQI 120 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 ET A+QR+AEPF FM NTR+KDL+LF+D+A R I +D I+YR+LIP+FMIS Sbjct: 121 NETEAVQRIAEPFRTFMAANTRDKDLALFVDLAR--ERGQTIQTSDPIDYRVLIPAFMIS 178 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 E+RR FEIGFL++LPFL+ID+IVATI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV Sbjct: 179 EIRRGFEIGFLVVLPFLVIDLIVATITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVG 238 Query: 240 NLVKSF 245 +LV+SF Sbjct: 239 SLVRSF 244 >gi|222084871|ref|YP_002543400.1| flagellar biosynthesis transmembrane protein [Agrobacterium radiobacter K84] gi|221722319|gb|ACM25475.1| flagellar biosynthesis transmembrane protein [Agrobacterium radiobacter K84] Length = 252 Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 147/239 (61%), Positives = 194/239 (81%), Gaps = 6/239 (2%) Query: 11 LVTPELVFAKSSLH----DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66 +++PEL A+ D++N P + S++ WI+RTFG+ TILSIAP +LIMVT FPRFI Sbjct: 15 ILSPELAMAQQLSQQIPTDLLNTPVNGSVAAWIIRTFGLLTILSIAPGILIMVTSFPRFI 74 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 I FSILR+GMG+ + P N++++SLALFMTFYVMSPT D++ + G QPL+ NQI+E A+ Sbjct: 75 IAFSILRSGMGLATTPSNMILLSLALFMTFYVMSPTFDQAWKDGAQPLLANQISEADAVM 134 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 R+AEPF FM NNTR+KD+ LF+D+A R + ++ I+YR+LIP+FMISE+RR FE Sbjct: 135 RIAEPFRTFMANNTRDKDIKLFVDLAQ--ERGQTVVIDNKIDYRVLIPAFMISEIRRGFE 192 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGFL++LPFL+ID+IV+TIVMAMGMMMLPPTSISLPFK++FFVLIDGW+LLV +LV+SF Sbjct: 193 IGFLVVLPFLVIDLIVSTIVMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVGSLVRSF 251 >gi|15887892|ref|NP_353573.1| flagellar biosynthesis protein FliP [Agrobacterium tumefaciens str. C58] gi|2494560|sp|Q44344|FLIP_AGRT5 RecName: Full=Flagellar biosynthetic protein fliP gi|1086567|gb|AAB68974.1| FliP [Agrobacterium tumefaciens] gi|2459720|gb|AAB71796.1| FliP [Agrobacterium tumefaciens] gi|15155484|gb|AAK86358.1| flagellar biosynthetic protein [Agrobacterium tumefaciens str. C58] Length = 245 Score = 306 bits (785), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 147/246 (59%), Positives = 193/246 (78%), Gaps = 3/246 (1%) Query: 1 MIRYCF-FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 MIR+ A+ L P L A+ D+ N D S++ WI+RTFG+ T+LS+AP +LIMV Sbjct: 1 MIRFLVTIAVLLALPGLANAQQFPSDLFNTQIDGSVAAWIIRTFGLLTVLSVAPGILIMV 60 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T FPRF+I FSILR+GMG+ S P N++++S+A+FMTFYVMSPT D++ G+QPL+ NQI Sbjct: 61 TSFPRFVIAFSILRSGMGLASTPSNMILLSMAMFMTFYVMSPTFDKAWTDGVQPLLQNQI 120 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 E A+QR+AEPF FM NTR+KDL LF+D+A R + ++ ++YR+L+P+FM+S Sbjct: 121 NEQQAVQRIAEPFRTFMNANTRDKDLKLFVDIAR--ERGQVVMTDNVVDYRVLVPAFMLS 178 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 E+RR FEIGFLIILPFL+ID+IVATI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV Sbjct: 179 EIRRGFEIGFLIILPFLVIDLIVATITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVG 238 Query: 240 NLVKSF 245 +LV+SF Sbjct: 239 SLVRSF 244 >gi|222147577|ref|YP_002548534.1| flagellar biosynthesis protein FliP [Agrobacterium vitis S4] gi|221734565|gb|ACM35528.1| flagellar biosynthetic protein [Agrobacterium vitis S4] Length = 245 Score = 306 bits (783), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 148/246 (60%), Positives = 193/246 (78%), Gaps = 3/246 (1%) Query: 1 MIR-YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 MIR A + PEL A+ + + P D S++ WI+RTFG+ T+LS+AP +LIMV Sbjct: 1 MIRTLILIAAMIAAPELAQAQQLPSNFLTAPVDGSVAAWIIRTFGLLTVLSVAPGILIMV 60 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T FPRF+I FSILR+GMG+ S P N+++ SLALFMTFYVM+P +D++ G++PL++NQI Sbjct: 61 TSFPRFVIAFSILRSGMGLSSTPSNMILTSLALFMTFYVMTPVMDQAWRDGVRPLLDNQI 120 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 TE A+ R+AEPF FM NNTREKDL LF+D+A+ + T + ++YR+LIP+FM+S Sbjct: 121 TEAEAVPRIAEPFRGFMSNNTREKDLRLFIDLANERGQTTVV--EGKVDYRVLIPAFMLS 178 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 E+RR FEIGFLIILPFL+IDMIV+TI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV Sbjct: 179 EIRRGFEIGFLIILPFLVIDMIVSTITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVG 238 Query: 240 NLVKSF 245 +LV+SF Sbjct: 239 SLVRSF 244 >gi|325291933|ref|YP_004277797.1| flagellar biosynthesis protein FliP [Agrobacterium sp. H13-3] gi|325059786|gb|ADY63477.1| flagellar biosynthesis protein FliP [Agrobacterium sp. H13-3] Length = 245 Score = 302 bits (774), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 146/246 (59%), Positives = 192/246 (78%), Gaps = 3/246 (1%) Query: 1 MIRYCF-FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 MIR+ A+ + P L A+ D+ N D S++ WI+RTFG+ T+LS+AP +LIMV Sbjct: 1 MIRFLVTIAVLVALPGLANAQQFPTDLFNTQIDGSVAAWIIRTFGLLTVLSVAPGILIMV 60 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T FPRF+I FSILR+GMG+ S P N++++S+A+FMTFYVMSPT D++ G+QPL+ NQI Sbjct: 61 TSFPRFVIAFSILRSGMGLASTPSNMILLSMAMFMTFYVMSPTFDKAWTDGVQPLLQNQI 120 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 E AI R+AEPF FM NTR+KDL LF+D+A R + ++ ++YR+L+P+FM+S Sbjct: 121 NEQQAIGRIAEPFRTFMNANTRDKDLKLFVDIAR--ERGQVVMTDNVVDYRVLVPAFMLS 178 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 E+RR FEIGFLIILPFL+ID+IVATI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV Sbjct: 179 EIRRGFEIGFLIILPFLVIDLIVATITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVG 238 Query: 240 NLVKSF 245 +LV+SF Sbjct: 239 SLVRSF 244 >gi|307318918|ref|ZP_07598349.1| flagellar biosynthetic protein FliP [Sinorhizobium meliloti AK83] gi|12057226|gb|AAB81419.2| FliP [Sinorhizobium meliloti] gi|306895332|gb|EFN26087.1| flagellar biosynthetic protein FliP [Sinorhizobium meliloti AK83] Length = 245 Score = 299 bits (765), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 142/247 (57%), Positives = 197/247 (79%), Gaps = 3/247 (1%) Query: 1 MIRYCFFALFLVT-PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 M+R+ F + ++ + A+S D++N P D S+++WI+RTFG+ T+LS+AP +LIMV Sbjct: 1 MLRFATFIIAMMAMSGIAGAQSFPADILNTPVDGSVASWIIRTFGLLTVLSVAPGILIMV 60 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T FPRF+I F+ILR+GMG+ + P N++++SLALFMTFYVM+PT DR+ GI PL+ N+I Sbjct: 61 TSFPRFVIAFAILRSGMGLATTPSNMIMVSLALFMTFYVMAPTFDRAWRDGIDPLLKNEI 120 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 +ET AIQR++EPF FM NTR+KDL LF+D+A + + ++ ++ R ++P+FMIS Sbjct: 121 SETDAIQRMSEPFREFMLANTRDKDLQLFIDIAR--EKGQTVVVDEKVDLRAVVPAFMIS 178 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 E+RR FEIGFLI+LPFL+ID+IVATI MAMGMMMLPPT+ISLPFK++FFVLIDGW+LLV Sbjct: 179 EIRRGFEIGFLIMLPFLVIDLIVATITMAMGMMMLPPTAISLPFKILFFVLIDGWNLLVG 238 Query: 240 NLVKSFI 246 +LV+SFI Sbjct: 239 SLVRSFI 245 >gi|15964421|ref|NP_384774.1| flagellar biosynthesis protein FliP [Sinorhizobium meliloti 1021] gi|307311563|ref|ZP_07591204.1| flagellar biosynthetic protein FliP [Sinorhizobium meliloti BL225C] gi|17380428|sp|P37827|FLIP_RHIME RecName: Full=Flagellar biosynthetic protein fliP gi|15073598|emb|CAC45240.1| Flagellar biosynthetic transmembrane protein [Sinorhizobium meliloti 1021] gi|306899580|gb|EFN30209.1| flagellar biosynthetic protein FliP [Sinorhizobium meliloti BL225C] Length = 245 Score = 298 bits (762), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 141/247 (57%), Positives = 197/247 (79%), Gaps = 3/247 (1%) Query: 1 MIRYCFFALFLVT-PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 M+R+ F + ++ + A+S D++N P D S+++WI+RTFG+ T+LS+AP +LIMV Sbjct: 1 MLRFATFIIAMMAMSGIAGAQSFPADILNTPVDGSVASWIIRTFGLLTVLSVAPGILIMV 60 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T FPRF+I F+ILR+GMG+ + P N++++SLALFMTFYVM+PT DR+ GI PL+ N+I Sbjct: 61 TSFPRFVIAFAILRSGMGLATTPSNMIMVSLALFMTFYVMAPTFDRAWRDGIDPLLKNEI 120 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 +ET A+QR++EPF FM NTR+KDL LF+D+A + + ++ ++ R ++P+FMIS Sbjct: 121 SETDAMQRMSEPFREFMVANTRDKDLQLFIDIAR--EKGQTVVVDEKVDLRAVVPAFMIS 178 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 E+RR FEIGFLI+LPFL+ID+IVATI MAMGMMMLPPT+ISLPFK++FFVLIDGW+LLV Sbjct: 179 EIRRGFEIGFLIMLPFLVIDLIVATITMAMGMMMLPPTAISLPFKILFFVLIDGWNLLVG 238 Query: 240 NLVKSFI 246 +LV+SFI Sbjct: 239 SLVRSFI 245 >gi|150395491|ref|YP_001325958.1| flagellar biosynthesis protein FliP [Sinorhizobium medicae WSM419] gi|150027006|gb|ABR59123.1| flagellar biosynthetic protein FliP [Sinorhizobium medicae WSM419] Length = 245 Score = 297 bits (760), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 140/247 (56%), Positives = 196/247 (79%), Gaps = 3/247 (1%) Query: 1 MIRYCFFALFLVT-PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 M+R+ F + ++ + A+ D++N P D S+++WI+RTFG+ T+LS+AP +LIMV Sbjct: 1 MLRFATFIIAMMAMSGIAGAQGFPADILNTPVDGSVASWIIRTFGLLTVLSVAPGILIMV 60 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T FPRF+I F+ILR+GMG+ + P N++++SLALFMTFYVM+PT DR+ GI PL+ N+I Sbjct: 61 TSFPRFVIAFAILRSGMGLATTPSNMIMVSLALFMTFYVMAPTFDRAWRDGIDPLLKNEI 120 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 +ET A+QR++EPF FM NTR+KDL LF+D+A + + ++ ++ R ++P+FMIS Sbjct: 121 SETEAMQRMSEPFREFMLANTRDKDLQLFIDIAQ--EKGQTVVVDEKVDLRAVVPAFMIS 178 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 E+RR FEIGFLI+LPFL+ID+IVATI MAMGMMMLPPT+ISLPFK++FFVLIDGW+LLV Sbjct: 179 EIRRGFEIGFLIMLPFLVIDLIVATITMAMGMMMLPPTAISLPFKILFFVLIDGWNLLVG 238 Query: 240 NLVKSFI 246 +LV+SFI Sbjct: 239 SLVRSFI 245 >gi|227820864|ref|YP_002824834.1| flagellar biosynthesis protein FliP [Sinorhizobium fredii NGR234] gi|227339863|gb|ACP24081.1| flagellar biosynthetic protein FliP [Sinorhizobium fredii NGR234] Length = 245 Score = 296 bits (759), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 138/227 (60%), Positives = 186/227 (81%), Gaps = 2/227 (0%) Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 A+S D++N P D S+++WI+RTFG+ T+LS+AP +LIMVT FPRF+I F+ILR+GMG+ Sbjct: 20 AQSFPADILNTPVDGSVASWIIRTFGLLTVLSVAPGILIMVTSFPRFVIAFAILRSGMGL 79 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 + P N++++SLALFMTFYVM+PT DR+ GI PL+ N+I+ET A+ RV+EPF FM Sbjct: 80 ATTPSNMIMVSLALFMTFYVMAPTFDRAWREGIDPLLKNEISETEALPRVSEPFREFMLA 139 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 NTR+KDL LF+D+A + + +D ++ R ++P+FMISE+RR FEIGFLI+LPFL+I Sbjct: 140 NTRDKDLQLFIDIAR--EKGQTVVVDDKVDLRAVVPAFMISEIRRGFEIGFLIMLPFLVI 197 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 D+IV+TI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV +LV+SF Sbjct: 198 DLIVSTITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVGSLVRSF 244 >gi|218658525|ref|ZP_03514455.1| flagellar biosynthesis protein FliP [Rhizobium etli IE4771] Length = 238 Score = 296 bits (757), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 139/206 (67%), Positives = 177/206 (85%), Gaps = 2/206 (0%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 +RTFG+ TILS+AP +LIMVT FPRF+I FSILR+GMG+ S P N++++SL+LFMTFYVM Sbjct: 34 IRTFGLLTILSVAPGILIMVTSFPRFVIAFSILRSGMGLSSTPSNMILLSLSLFMTFYVM 93 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SPT D++ + G+QPL+ NQI ET A+QR+AEPF FM NTR+KDL+LF+D+A R Sbjct: 94 SPTFDQAWQSGVQPLLANQINETEAVQRIAEPFRTFMAANTRDKDLALFVDLAR--ERGQ 151 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 +I +D I+YR+LIP+FMISE+RR FEIGFL++LPFL+ID+IVATI MAMGMMMLPPTSI Sbjct: 152 NIQTSDPIDYRVLIPAFMISEIRRGFEIGFLVVLPFLVIDLIVATITMAMGMMMLPPTSI 211 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++FFVLIDGW+LLV +LV+SF Sbjct: 212 SLPFKILFFVLIDGWNLLVGSLVRSF 237 >gi|163758021|ref|ZP_02165109.1| putative flagellar biosynthetic protein FliP [Hoeflea phototrophica DFL-43] gi|162284310|gb|EDQ34593.1| putative flagellar biosynthetic protein FliP [Hoeflea phototrophica DFL-43] Length = 245 Score = 292 bits (747), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 136/228 (59%), Positives = 186/228 (81%), Gaps = 2/228 (0%) Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 A++ ++ P D S+++WI+RTFG+ T+LS+AP +LIMVT FPRFII F+ILR GMG+ Sbjct: 20 AQALDPGLLQAPLDGSVASWIIRTFGLLTVLSVAPGILIMVTSFPRFIIAFAILRAGMGL 79 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 + P N++++SLALFMTFYVM+PT DR+ E G+ PL+ +QITE AIQ +A+PF FM Sbjct: 80 ATTPANMILVSLALFMTFYVMAPTFDRAWENGVTPLLEDQITEEEAIQLIADPFRDFMLV 139 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 NTR KDL+LF+D+A ++T+ + I+ R+L+P+FMISE+RR FEIGFL++LPFL+I Sbjct: 140 NTRPKDLALFVDLATERGQSTE--TDGKIDMRVLVPAFMISEIRRGFEIGFLVVLPFLVI 197 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 D++VATI MAMGMMMLPPT+ISLPFK++FFVLIDGW+LLV +LV+SF+ Sbjct: 198 DLVVATITMAMGMMMLPPTAISLPFKILFFVLIDGWNLLVGSLVRSFV 245 >gi|110632650|ref|YP_672858.1| flagellar biosynthesis protein FliP [Mesorhizobium sp. BNC1] gi|110283634|gb|ABG61693.1| flagellar biosynthetic protein FliP [Chelativorans sp. BNC1] Length = 246 Score = 281 bits (718), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 137/215 (63%), Positives = 173/215 (80%), Gaps = 2/215 (0%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 A+ S +I++ FG+ T+LSIAP +LIMVT F RF+IVFSILRTG+G+ S P NL+++SL Sbjct: 33 ANGSTIGYIIQIFGLLTVLSIAPGILIMVTSFTRFVIVFSILRTGIGLPSTPANLILVSL 92 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 ALFMTFYVM+PT DR+ G++PLM NQI ETTA++R+AEPF FM N RE+D +LF D Sbjct: 93 ALFMTFYVMAPTFDRAWSEGVRPLMANQIDETTAVERIAEPFRAFMSANVREEDYTLFAD 152 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 +A + R D + R+LIP+FMISE+RR FEIGFLI+LPFL+ID+IVATI MAMG Sbjct: 153 LA--AERGGIQQTTDQADLRVLIPAFMISEIRRGFEIGFLIVLPFLVIDLIVATITMAMG 210 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMMLPPT ISLPFK++FFVLIDGW+LLV +LV+SF Sbjct: 211 MMMLPPTVISLPFKILFFVLIDGWNLLVGSLVRSF 245 >gi|121601713|ref|YP_989394.1| flagellar biosynthesis protein FliP [Bartonella bacilliformis KC583] gi|120613890|gb|ABM44491.1| flagellar biosynthetic protein FliP [Bartonella bacilliformis KC583] Length = 247 Score = 275 bits (703), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 130/212 (61%), Positives = 173/212 (81%), Gaps = 3/212 (1%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 S+S WIV+ FG+ T+LS+AP LL+MVT F RF I FS+LR+G+G+ + PPNLV+ISLALF Sbjct: 39 SVSGWIVQLFGLLTVLSVAPGLLMMVTSFTRFAIAFSLLRSGLGLQTTPPNLVMISLALF 98 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 MTFYVM+PT + + E G+QPLM N+ITE AI ++++PF FM + REKDL LF+D++ Sbjct: 99 MTFYVMAPTFNAAWEQGVQPLMKNEITEQQAIDKISQPFREFMISQVREKDLDLFVDLSD 158 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 S + + I++RIL+P+FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMM Sbjct: 159 PSFQ---VRTGADIDFRILVPAFMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMM 215 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LPPT ISLPFK++FFVLIDGW+LLV +L++SF Sbjct: 216 LPPTVISLPFKILFFVLIDGWNLLVGSLIRSF 247 >gi|260466613|ref|ZP_05812801.1| flagellar biosynthetic protein FliP [Mesorhizobium opportunistum WSM2075] gi|259029619|gb|EEW30907.1| flagellar biosynthetic protein FliP [Mesorhizobium opportunistum WSM2075] Length = 243 Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 133/242 (54%), Positives = 183/242 (75%), Gaps = 9/242 (3%) Query: 10 FLVTPELVFAKSSLHDVMNI------PADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63 FL+ L+ A +S+ + AD + +I++ FG+ T+LS+AP LLIMVT F Sbjct: 4 FLLAAALIGATTSIAAAQQLDLGGIGKADGTTVGYIIQMFGLLTVLSVAPGLLIMVTSFT 63 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 RF+I FSILR G+G+ S P NL++ISL+LFMTFYVM+PT D++ G++PLM+NQI++T Sbjct: 64 RFVIAFSILRAGIGLQSTPANLILISLSLFMTFYVMAPTFDQAWNTGVKPLMDNQISQTE 123 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 A ++++PF FM +N R+KD LF D+A R +++ D ++ RIL+P+FMISE+RR Sbjct: 124 AFDKISDPFRTFMLHNVRDKDFDLFADLAR--ERGQTVSR-DTVDLRILVPAFMISEIRR 180 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 FEIGFLI+LPFL+ID+IVATI MAMGMMMLPPT +SLPFK++FFVLIDGW+LLV +LV+ Sbjct: 181 GFEIGFLIVLPFLVIDLIVATITMAMGMMMLPPTVVSLPFKILFFVLIDGWNLLVGSLVR 240 Query: 244 SF 245 SF Sbjct: 241 SF 242 >gi|319409181|emb|CBI82825.1| Flagellar biosynthetic protein fliP [Bartonella schoenbuchensis R1] Length = 253 Score = 271 bits (693), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 137/252 (54%), Positives = 190/252 (75%), Gaps = 11/252 (4%) Query: 2 IRYCFFALFLVTPEL--VFAK-SSLHDVMNI-----PADLSISTWIVRTFGIFTILSIAP 53 + + F L LVT + VFA+ ++L + P D IS IV+ FG+ T+LS+AP Sbjct: 5 VGFVFMMLLLVTTDATDVFAQQTNLASTGGLSGLLAPTDGKISGRIVQLFGLLTVLSVAP 64 Query: 54 ILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQP 113 LLIMVT F RF+I FS+LR+G+G+ + P NLV+ISLALFMTFYVM+PT + + E G+QP Sbjct: 65 GLLIMVTSFTRFVIAFSLLRSGLGLQTTPSNLVMISLALFMTFYVMAPTFNTAWEQGVQP 124 Query: 114 LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILI 173 L+ N+I+E AI+++++PF FM + REKDL LF+D++ S ++ I++R+L+ Sbjct: 125 LIKNEISEQKAIEKISQPFREFMISQVREKDLDLFVDLSDPSF---NVKTGADIDFRVLV 181 Query: 174 PSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDG 233 P+FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDG Sbjct: 182 PAFMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDG 241 Query: 234 WSLLVENLVKSF 245 W+LLV +L++SF Sbjct: 242 WNLLVGSLIRSF 253 >gi|319898643|ref|YP_004158736.1| flagellar biosynthetic protein fliP [Bartonella clarridgeiae 73] gi|319402607|emb|CBI76152.1| Flagellar biosynthetic protein fliP [Bartonella clarridgeiae 73] Length = 250 Score = 271 bits (692), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 136/243 (55%), Positives = 186/243 (76%), Gaps = 9/243 (3%) Query: 9 LFLVTPELVFAKSSLHDVMNIPADL------SISTWIVRTFGIFTILSIAPILLIMVTCF 62 + L+T FA+ + +N A L SIS IV+ FG+ T+LS+AP LLIMVT F Sbjct: 11 ILLLTTTGAFAQRVGTENVNSLAGLFFSPGVSISGRIVQLFGLLTVLSVAPGLLIMVTSF 70 Query: 63 PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122 RF I FS+LRTG+G+ + P NLV+ISLALFM+FYVM+PT + + E G+QPL+NN+I+E Sbjct: 71 TRFAIAFSLLRTGLGLQTTPSNLVMISLALFMSFYVMAPTFNTAWEQGVQPLVNNKISEQ 130 Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182 AI+++++PF FM + REKDL LF+D++ SS + + +++R+LIP+FMISELR Sbjct: 131 QAIEKISQPFREFMISQVREKDLDLFVDLSDSSLQ---VKTGADVDFRVLIPAFMISELR 187 Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242 R FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW+LLV +L+ Sbjct: 188 RGFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNLLVGSLI 247 Query: 243 KSF 245 +SF Sbjct: 248 RSF 250 >gi|319781675|ref|YP_004141151.1| flagellar biosynthetic protein FliP [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167563|gb|ADV11101.1| flagellar biosynthetic protein FliP [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 243 Score = 270 bits (691), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 129/215 (60%), Positives = 173/215 (80%), Gaps = 3/215 (1%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 AD + +I++ FG+ T+LS+AP LLIMVT F RF+I FSILR G+G+ S P NL++ISL Sbjct: 31 ADGTTVGYIIQMFGLLTVLSVAPGLLIMVTSFTRFVIAFSILRAGIGLQSTPANLILISL 90 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 +LFMTFYVM+PT D++ G++PLM+NQIT+T A ++++PF FM +N R+KD LF D Sbjct: 91 SLFMTFYVMAPTFDQAWNTGVKPLMDNQITQTEAFDKISDPFRTFMLHNVRDKDFDLFAD 150 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 +A R +++ D ++ RIL+P+FMISE+RR FEIGFLI+LPFL+ID+IVATI MAMG Sbjct: 151 LAR--ERGQTVSR-DTVDLRILVPAFMISEIRRGFEIGFLIVLPFLVIDLIVATITMAMG 207 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMMLPPT +SLPFK++FFVLIDGW+LLV +LV+SF Sbjct: 208 MMMLPPTVVSLPFKILFFVLIDGWNLLVGSLVRSF 242 >gi|13472582|ref|NP_104149.1| flagellar biosynthesis protein FliP [Mesorhizobium loti MAFF303099] gi|14023328|dbj|BAB49935.1| flagellar biosynthesis protein; FliP [Mesorhizobium loti MAFF303099] Length = 243 Score = 270 bits (690), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 126/215 (58%), Positives = 172/215 (80%), Gaps = 3/215 (1%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 AD + +I++ FG+ T+LS+AP LLIMVT F RF+I FSILR G+G+ S P NL++ISL Sbjct: 31 ADGATVGYIIQMFGLLTVLSVAPGLLIMVTSFTRFVIAFSILRAGIGLQSTPANLILISL 90 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 +LFMTFYVM+PT D++ G++PLM+NQI++T A +++++PF FM +N R+KD LF D Sbjct: 91 SLFMTFYVMAPTFDQAWNTGVKPLMDNQISQTEAFEKISDPFRTFMLHNVRDKDFDLFAD 150 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 +A + + + ++ RIL+P+FMISE+RR FEIGFLI+LPFL+ID+IVATI MAMG Sbjct: 151 LARERGQ---VVAKETVDLRILVPAFMISEIRRGFEIGFLIVLPFLVIDLIVATITMAMG 207 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMMLPPT +SLPFK++FFVLIDGW+LLV +LV+SF Sbjct: 208 MMMLPPTVVSLPFKILFFVLIDGWNLLVGSLVRSF 242 >gi|319403967|emb|CBI77555.1| Flagellar biosynthetic protein fliP [Bartonella rochalimae ATCC BAA-1498] Length = 250 Score = 270 bits (690), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 138/253 (54%), Positives = 189/253 (74%), Gaps = 11/253 (4%) Query: 1 MIRYCFFAL--FLVTPELVFA-KSSLHDVMNIPA-----DLSISTWIVRTFGIFTILSIA 52 M R F L FL+ + FA K+ + I + SIS IV+ FG+ TILS+A Sbjct: 1 MKRLGGFVLMIFLLATTVAFAQKTGAENASGIAGLFSYPEGSISGRIVQLFGLLTILSVA 60 Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P LLIMVT F RF I FS+LRTG+G+ + P NLV+ISLALFM+FYVM+PT + + E G+Q Sbjct: 61 PGLLIMVTSFTRFAIAFSLLRTGLGLQTTPSNLVMISLALFMSFYVMAPTFNTAWEEGVQ 120 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 PL+NN+I+E AI+++++PF FM + REKDL LF++++ SS + + I++R+L Sbjct: 121 PLVNNKISEQQAIEKISQPFREFMISQVREKDLDLFVNLSDSSLQ---VKTGSDIDFRVL 177 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 +P+FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVL+D Sbjct: 178 VPAFMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLVD 237 Query: 233 GWSLLVENLVKSF 245 GW+LLV +L++SF Sbjct: 238 GWNLLVGSLIRSF 250 >gi|319405407|emb|CBI79026.1| Flagellar biosynthetic protein fliP [Bartonella sp. AR 15-3] Length = 250 Score = 270 bits (689), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 137/244 (56%), Positives = 187/244 (76%), Gaps = 11/244 (4%) Query: 9 LFLVTPELVFAK-------SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61 + L+T + FA+ SSL + + P SIS IV+ FG+ TILS+AP LLIMVT Sbjct: 11 ILLLTTTVAFAQKTGPENASSLAGLFSYPEG-SISGRIVQFFGLLTILSVAPGLLIMVTS 69 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F RF I FS+LRTG+G+ + P NLV+ISLALFM+FYVM+PT + + E G+QPL++N+I+E Sbjct: 70 FTRFAIAFSLLRTGLGLQTTPSNLVMISLALFMSFYVMAPTFNTAWEQGVQPLVSNKISE 129 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 AI+++++PF FM + REKDL LF+D++ S + + +++R+LIP+FMISEL Sbjct: 130 QQAIEKISQPFREFMISQVREKDLDLFVDLSDPSLQ---VKTGSDVDFRVLIPAFMISEL 186 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 RR FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW+LLV +L Sbjct: 187 RRGFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNLLVGSL 246 Query: 242 VKSF 245 V+SF Sbjct: 247 VRSF 250 >gi|319406982|emb|CBI80619.1| Flagellar biosynthetic protein fliP [Bartonella sp. 1-1C] Length = 250 Score = 268 bits (686), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 137/254 (53%), Positives = 190/254 (74%), Gaps = 13/254 (5%) Query: 1 MIRYCFFAL--FLVTPELVFAK-------SSLHDVMNIPADLSISTWIVRTFGIFTILSI 51 M R+ F L FL+ + FA+ S L + + P SIS IV+ FG+ TILS+ Sbjct: 1 MKRFGGFVLMIFLLATTVAFAQKTGAENASGLAGLFSYPQG-SISGRIVQLFGLLTILSV 59 Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP LLIMVT F RF I FS+LRTG+G+ + P NLV+ISLALFM+FYVM+PT + + E G+ Sbjct: 60 APGLLIMVTSFTRFAIAFSLLRTGLGLQTTPSNLVMISLALFMSFYVMAPTFNTAWEDGV 119 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 PL+NN+I+E AI+++++PF FM + REKDL LF++++ SS + + +++R+ Sbjct: 120 HPLVNNKISEQQAIEKISQPFREFMISQVREKDLDLFVNLSDSSLQ---VKTGSDVDFRV 176 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 L+P+FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVL+ Sbjct: 177 LVPAFMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLV 236 Query: 232 DGWSLLVENLVKSF 245 DGW+LLV +L++SF Sbjct: 237 DGWNLLVGSLIRSF 250 >gi|114706620|ref|ZP_01439521.1| flagellar biosynthesis protein P [Fulvimarina pelagi HTCC2506] gi|114538012|gb|EAU41135.1| flagellar biosynthesis protein P [Fulvimarina pelagi HTCC2506] Length = 264 Score = 263 bits (673), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 141/246 (57%), Positives = 175/246 (71%), Gaps = 9/246 (3%) Query: 7 FALFLVTPELVFAKSSLHDVMNIP-ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65 F L V + SSL D+ IP D +IS I++ FGI T+LSIAP LL+MVT F R Sbjct: 20 FGLGTVAQAQIADPSSLADL--IPQGDGTISGRIIQLFGIVTVLSIAPGLLVMVTAFTRI 77 Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 +I SI+RTG+G+ + P NL+IISLALFMTF+VMSPT DR+ G+QPL+ N+I E A Sbjct: 78 VIALSIMRTGLGLQTTPANLIIISLALFMTFFVMSPTFDRAWNDGLQPLLENEIDEEEAF 137 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN------TDITKNDHIEYRILIPSFMIS 179 R+A+PF FM R DL LF D+A + R+ IE R+LIP+FMIS Sbjct: 138 YRIADPFKEFMLTQVRPSDLQLFGDIASVTDRDRVQPEEQGAADERDIELRVLIPAFMIS 197 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 ELRR FEIGFLI+LPFL+IDMIVAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW+LLV Sbjct: 198 ELRRGFEIGFLIVLPFLVIDMIVATLTMSMGMMMLPPTIISLPFKILFFVLIDGWNLLVG 257 Query: 240 NLVKSF 245 +LV+SF Sbjct: 258 SLVRSF 263 >gi|118589975|ref|ZP_01547379.1| flagellar biosynthesis protein [Stappia aggregata IAM 12614] gi|118437472|gb|EAV44109.1| flagellar biosynthesis protein [Stappia aggregata IAM 12614] Length = 247 Score = 263 bits (671), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 129/219 (58%), Positives = 168/219 (76%), Gaps = 1/219 (0%) Query: 29 IPA-DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87 +PA + S S I++ + T+LS+AP +LIMVT F RF+I FS LR+G+G+ + P NL++ Sbjct: 29 LPAGEGSASGRIIQMIALLTVLSLAPGILIMVTSFTRFVIAFSFLRSGIGLQTTPGNLIL 88 Query: 88 ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147 ISLALFMTFYVM+PT D++ E G+QPLMNN+I+E A R+ PF FM + RE+DL L Sbjct: 89 ISLALFMTFYVMAPTFDKAWEQGVQPLMNNEISEEEAYVRITTPFRDFMLSQVREEDLVL 148 Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 F D+A + + + ++ R+LIP+FMISELRR FEIGFLI LPFL+IDMIVATI M Sbjct: 149 FDDLAAGRVTDNEAASAEEVDLRVLIPAFMISELRRGFEIGFLIALPFLVIDMIVATITM 208 Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +MGMMMLPPT ISLPFK +FFVLIDGW+LLV +LV+SF+ Sbjct: 209 SMGMMMLPPTVISLPFKALFFVLIDGWNLLVGSLVRSFL 247 >gi|256059603|ref|ZP_05449801.1| flagellar biosynthesis protein FliP [Brucella neotomae 5K33] gi|261323570|ref|ZP_05962767.1| flagellar biosynthetic protein FliP [Brucella neotomae 5K33] gi|261299550|gb|EEY03047.1| flagellar biosynthetic protein FliP [Brucella neotomae 5K33] Length = 246 Score = 262 bits (669), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 125/212 (58%), Positives = 168/212 (79%), Gaps = 3/212 (1%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 + S IV+ FG+ T+LSIAP LLIMVT F RF I FS+LR+G+G+ + P ++V+ISLALF Sbjct: 37 AASGQIVQLFGLLTVLSIAPGLLIMVTSFTRFAIAFSLLRSGLGLQTAPASMVMISLALF 96 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 MTFYVM+PT DR+ G+QPLM N+IT+ A +++PF FM R+KDL LF D+A Sbjct: 97 MTFYVMAPTFDRAWNNGVQPLMRNEITQEAAFGEISQPFREFMMAQVRDKDLRLFEDLAD 156 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 S R +D + +++R+L+P+FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMM Sbjct: 157 PSFRTSD---DGIVDFRVLVPAFMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMM 213 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LPPT ISLPFK++FFVLIDGW++LV +L++SF Sbjct: 214 LPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245 >gi|256158112|ref|ZP_05456030.1| flagellar biosynthesis protein FliP [Brucella ceti M490/95/1] gi|256252934|ref|ZP_05458470.1| flagellar biosynthesis protein FliP [Brucella ceti B1/94] gi|261220025|ref|ZP_05934306.1| flagellar biosynthetic protein FliP [Brucella ceti B1/94] gi|265996629|ref|ZP_06109186.1| flagellar biosynthetic protein FliP [Brucella ceti M490/95/1] gi|260918609|gb|EEX85262.1| flagellar biosynthetic protein FliP [Brucella ceti B1/94] gi|262550926|gb|EEZ07087.1| flagellar biosynthetic protein FliP [Brucella ceti M490/95/1] Length = 246 Score = 260 bits (665), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 124/212 (58%), Positives = 167/212 (78%), Gaps = 3/212 (1%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 + S IV+ FG+ T+LSIAP LLIMVT F RF I FS+LR+G+G+ + P ++V+ISLALF Sbjct: 37 AASGQIVQLFGLLTVLSIAPGLLIMVTSFTRFAIAFSLLRSGLGLQTAPASMVMISLALF 96 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 MTFYVM+P DR+ G+QPLM N+IT+ A +++PF FM R+KDL LF D+A Sbjct: 97 MTFYVMAPAFDRAWNNGVQPLMRNEITQEAAFGEISQPFREFMMAQVRDKDLRLFEDLAD 156 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 S R +D + +++R+L+P+FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMM Sbjct: 157 PSFRTSD---DGIVDFRVLVPAFMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMM 213 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LPPT ISLPFK++FFVLIDGW++LV +L++SF Sbjct: 214 LPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245 >gi|23499922|ref|NP_699362.1| flagellar biosynthesis protein FliP [Brucella suis 1330] gi|148558353|ref|YP_001257218.1| flagellar biosynthesis protein FliP [Brucella ovis ATCC 25840] gi|161620242|ref|YP_001594128.1| flagellar biosynthesis protein FliP [Brucella canis ATCC 23365] gi|163844351|ref|YP_001622006.1| flagellar biosynthesis protein FliP [Brucella suis ATCC 23445] gi|225628631|ref|ZP_03786665.1| flagellar biosynthetic protein FliP [Brucella ceti str. Cudo] gi|225686018|ref|YP_002733990.1| flagellar biosynthesis protein FliP [Brucella melitensis ATCC 23457] gi|254695296|ref|ZP_05157124.1| flagellar biosynthesis protein FliP [Brucella abortus bv. 3 str. Tulya] gi|254702582|ref|ZP_05164410.1| flagellar biosynthesis protein FliP [Brucella suis bv. 3 str. 686] gi|254706286|ref|ZP_05168114.1| flagellar biosynthesis protein FliP [Brucella pinnipedialis M163/99/10] gi|254711420|ref|ZP_05173231.1| flagellar biosynthesis protein FliP [Brucella pinnipedialis B2/94] gi|254712020|ref|ZP_05173831.1| flagellar biosynthesis protein FliP [Brucella ceti M644/93/1] gi|254715089|ref|ZP_05176900.1| flagellar biosynthesis protein FliP [Brucella ceti M13/05/1] gi|256014948|ref|YP_003104957.1| flagellar biosynthesis protein [Brucella microti CCM 4915] gi|256111937|ref|ZP_05452888.1| flagellar biosynthesis protein FliP [Brucella melitensis bv. 3 str. Ether] gi|256262859|ref|ZP_05465391.1| flagellar transporter FliP [Brucella melitensis bv. 2 str. 63/9] gi|260568510|ref|ZP_05838979.1| flagellar transporter FliP [Brucella suis bv. 4 str. 40] gi|261215665|ref|ZP_05929946.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 3 str. Tulya] gi|261216798|ref|ZP_05931079.1| flagellar biosynthetic protein FliP [Brucella ceti M13/05/1] gi|261313730|ref|ZP_05952927.1| flagellar biosynthetic protein FliP [Brucella pinnipedialis M163/99/10] gi|261319028|ref|ZP_05958225.1| flagellar biosynthetic protein FliP [Brucella pinnipedialis B2/94] gi|261319665|ref|ZP_05958862.1| flagellar biosynthetic protein FliP [Brucella ceti M644/93/1] gi|261753162|ref|ZP_05996871.1| flagellar biosynthetic protein FliP [Brucella suis bv. 3 str. 686] gi|265993384|ref|ZP_06105941.1| flagellar biosynthetic protein FliP [Brucella melitensis bv. 3 str. Ether] gi|23463499|gb|AAN33367.1| flagellar biosynthetic protein FliP [Brucella suis 1330] gi|148369638|gb|ABQ62510.1| flagellar biosynthetic protein FliP [Brucella ovis ATCC 25840] gi|161337053|gb|ABX63357.1| flagellar biosynthetic protein FliP [Brucella canis ATCC 23365] gi|163675074|gb|ABY39184.1| flagellar biosynthetic protein FliP [Brucella suis ATCC 23445] gi|225616477|gb|EEH13525.1| flagellar biosynthetic protein FliP [Brucella ceti str. Cudo] gi|225642123|gb|ACO02036.1| flagellar biosynthetic protein FliP [Brucella melitensis ATCC 23457] gi|255997608|gb|ACU49295.1| flagellar biosynthesis protein [Brucella microti CCM 4915] gi|260155175|gb|EEW90256.1| flagellar transporter FliP [Brucella suis bv. 4 str. 40] gi|260917272|gb|EEX84133.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 3 str. Tulya] gi|260921887|gb|EEX88455.1| flagellar biosynthetic protein FliP [Brucella ceti M13/05/1] gi|261292355|gb|EEX95851.1| flagellar biosynthetic protein FliP [Brucella ceti M644/93/1] gi|261298251|gb|EEY01748.1| flagellar biosynthetic protein FliP [Brucella pinnipedialis B2/94] gi|261302756|gb|EEY06253.1| flagellar biosynthetic protein FliP [Brucella pinnipedialis M163/99/10] gi|261742915|gb|EEY30841.1| flagellar biosynthetic protein FliP [Brucella suis bv. 3 str. 686] gi|262764254|gb|EEZ10286.1| flagellar biosynthetic protein FliP [Brucella melitensis bv. 3 str. Ether] gi|263092694|gb|EEZ16903.1| flagellar transporter FliP [Brucella melitensis bv. 2 str. 63/9] gi|326410341|gb|ADZ67405.1| flagellar biosynthesis protein FliP [Brucella melitensis M28] gi|326553633|gb|ADZ88272.1| flagellar biosynthesis protein FliP [Brucella melitensis M5-90] Length = 246 Score = 260 bits (665), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 124/212 (58%), Positives = 167/212 (78%), Gaps = 3/212 (1%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 + S IV+ FG+ T+LSIAP LLIMVT F RF I FS+LR+G+G+ + P ++V+ISLALF Sbjct: 37 AASGQIVQLFGLLTVLSIAPGLLIMVTSFTRFAIAFSLLRSGLGLQTAPASMVMISLALF 96 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 MTFYVM+P DR+ G+QPLM N+IT+ A +++PF FM R+KDL LF D+A Sbjct: 97 MTFYVMAPAFDRAWNNGVQPLMRNEITQEAAFGEISQPFREFMMAQVRDKDLRLFEDLAD 156 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 S R +D + +++R+L+P+FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMM Sbjct: 157 PSFRTSD---DGIVDFRVLVPAFMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMM 213 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LPPT ISLPFK++FFVLIDGW++LV +L++SF Sbjct: 214 LPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245 >gi|62317108|ref|YP_222961.1| flagellar biosynthesis protein FliP [Brucella abortus bv. 1 str. 9-941] gi|83269100|ref|YP_418391.1| flagellar biosynthesis protein FliP [Brucella melitensis biovar Abortus 2308] gi|189022373|ref|YP_001932114.1| flagellar biosynthesis protein FliP [Brucella abortus S19] gi|237816670|ref|ZP_04595662.1| flagellar biosynthetic protein FliP [Brucella abortus str. 2308 A] gi|254691406|ref|ZP_05154660.1| flagellar biosynthesis protein FliP [Brucella abortus bv. 6 str. 870] gi|254698391|ref|ZP_05160219.1| flagellar biosynthesis protein FliP [Brucella abortus bv. 2 str. 86/8/59] gi|254731838|ref|ZP_05190416.1| flagellar biosynthesis protein FliP [Brucella abortus bv. 4 str. 292] gi|256256592|ref|ZP_05462128.1| flagellar biosynthesis protein FliP [Brucella abortus bv. 9 str. C68] gi|260544347|ref|ZP_05820168.1| flagellar transporter FliP [Brucella abortus NCTC 8038] gi|260757020|ref|ZP_05869368.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 6 str. 870] gi|260759608|ref|ZP_05871956.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 4 str. 292] gi|260762850|ref|ZP_05875182.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 2 str. 86/8/59] gi|260882830|ref|ZP_05894444.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 9 str. C68] gi|297249948|ref|ZP_06933649.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 5 str. B3196] gi|62197301|gb|AAX75600.1| FliP, flagellar biosynthetic protein [Brucella abortus bv. 1 str. 9-941] gi|82939374|emb|CAJ12324.1| Flagellar transport protein FliP:Type III secretion system inner membrane P protein [Brucella melitensis biovar Abortus 2308] gi|189020947|gb|ACD73668.1| Flagellar transport protein FliP [Brucella abortus S19] gi|237787483|gb|EEP61699.1| flagellar biosynthetic protein FliP [Brucella abortus str. 2308 A] gi|260097618|gb|EEW81492.1| flagellar transporter FliP [Brucella abortus NCTC 8038] gi|260669926|gb|EEX56866.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 4 str. 292] gi|260673271|gb|EEX60092.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 2 str. 86/8/59] gi|260677128|gb|EEX63949.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 6 str. 870] gi|260872358|gb|EEX79427.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 9 str. C68] gi|297173817|gb|EFH33181.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 5 str. B3196] Length = 246 Score = 260 bits (665), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 124/212 (58%), Positives = 167/212 (78%), Gaps = 3/212 (1%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 + S IV+ FG+ T+LSIAP LLIMVT F RF I FS+LR+G+G+ + P ++V+ISLALF Sbjct: 37 AASGQIVQLFGLLTVLSIAPGLLIMVTSFTRFAIAFSLLRSGLGLQTAPASMVMISLALF 96 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 MTFYVM+P DR+ G+QPLM N+IT+ A +++PF FM R+KDL LF D+A Sbjct: 97 MTFYVMAPAFDRAWNNGVQPLMRNEITQEAAFGEISQPFREFMMAQVRDKDLCLFEDLAD 156 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 S R +D + +++R+L+P+FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMM Sbjct: 157 PSFRTSD---DGIVDFRVLVPAFMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMM 213 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LPPT ISLPFK++FFVLIDGW++LV +L++SF Sbjct: 214 LPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245 >gi|254720604|ref|ZP_05182415.1| flagellar biosynthesis protein FliP [Brucella sp. 83/13] gi|265985644|ref|ZP_06098379.1| flagellar biosynthetic protein FliP [Brucella sp. 83/13] gi|306838566|ref|ZP_07471403.1| flagellar biosynthetic protein FliP [Brucella sp. NF 2653] gi|264664236|gb|EEZ34497.1| flagellar biosynthetic protein FliP [Brucella sp. 83/13] gi|306406352|gb|EFM62594.1| flagellar biosynthetic protein FliP [Brucella sp. NF 2653] Length = 246 Score = 260 bits (664), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 124/212 (58%), Positives = 166/212 (78%), Gaps = 3/212 (1%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 + S IV+ FG+ T+LSIAP LLIMVT F RF I FS+LR+G+G+ + P ++V+ISLALF Sbjct: 37 AASGQIVQLFGLLTVLSIAPGLLIMVTSFTRFAIAFSLLRSGLGLQTAPASMVMISLALF 96 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 MTFYVM+P DR+ G+QPLM N+IT+ A +++PF FM R+KDL LF D+A Sbjct: 97 MTFYVMAPAFDRAWNNGVQPLMRNEITQEAAFGEISQPFREFMMAQVRDKDLRLFEDLAD 156 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 S R D + +++R+L+P+FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMM Sbjct: 157 PSFRTGD---DGIVDFRVLVPAFMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMM 213 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LPPT ISLPFK++FFVLIDGW++LV +L++SF Sbjct: 214 LPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245 >gi|306846272|ref|ZP_07478833.1| flagellar biosynthetic protein FliP [Brucella sp. BO1] gi|306273267|gb|EFM55136.1| flagellar biosynthetic protein FliP [Brucella sp. BO1] Length = 246 Score = 259 bits (663), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 124/212 (58%), Positives = 166/212 (78%), Gaps = 3/212 (1%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 + S IV+ FG+ T+LSIAP LLIMVT F RF I FS+LR+G+G+ + P ++V+ISLALF Sbjct: 37 AASGQIVQLFGLLTVLSIAPGLLIMVTSFTRFAIAFSLLRSGLGLQTAPASMVMISLALF 96 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 MTFYVM+P DR+ + G+QPLM N+IT+ A +++PF FM R KDL LF D+A Sbjct: 97 MTFYVMAPAFDRAWDNGVQPLMRNEITQEAAFGEISQPFREFMMAQVRGKDLRLFEDLAD 156 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 S R D + +++R+L+P+FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMM Sbjct: 157 PSFRTGD---DGIVDFRVLVPAFMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMM 213 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LPPT ISLPFK++FFVLIDGW++LV +L++SF Sbjct: 214 LPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245 >gi|239834436|ref|ZP_04682764.1| flagellar biosynthetic protein FliP [Ochrobactrum intermedium LMG 3301] gi|239822499|gb|EEQ94068.1| flagellar biosynthetic protein FliP [Ochrobactrum intermedium LMG 3301] Length = 246 Score = 259 bits (663), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 123/212 (58%), Positives = 166/212 (78%), Gaps = 3/212 (1%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 + S IV+ FG+ T+LSIAP +LIMVT F RF I FS+LR+G+G+ + P ++V+ISLALF Sbjct: 37 AASGQIVQLFGLLTVLSIAPGILIMVTSFTRFAIAFSLLRSGLGLQTAPASMVMISLALF 96 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 MTFYVM+P DR+ G+QPLM N+IT+ A +++PF FM R+KDL LF D+A Sbjct: 97 MTFYVMAPAFDRAWNNGVQPLMRNEITQQAAFTEISQPFREFMLGQVRDKDLRLFEDLAD 156 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 S R D + +++R+L+P+FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMM Sbjct: 157 PSFRTGD---DGIVDFRVLVPAFMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMM 213 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LPPT ISLPFK++FFVLIDGW++LV +L++SF Sbjct: 214 LPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245 >gi|153011518|ref|YP_001372732.1| flagellar biosynthesis protein FliP [Ochrobactrum anthropi ATCC 49188] gi|151563406|gb|ABS16903.1| flagellar biosynthetic protein FliP [Ochrobactrum anthropi ATCC 49188] Length = 246 Score = 259 bits (663), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 124/212 (58%), Positives = 166/212 (78%), Gaps = 3/212 (1%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 + S IV+ FG+ T+LSIAP LLIMVT F RF I FS+LR+G+G+ + P ++V+ISLALF Sbjct: 37 AASGQIVQLFGLLTVLSIAPGLLIMVTSFTRFAIAFSLLRSGLGLQTAPASMVMISLALF 96 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 MTFYVM+P DR+ G+QPLM N+IT+ A +++PF FM R+KDL LF D+A Sbjct: 97 MTFYVMAPAFDRAWNNGVQPLMRNEITQEAAFGEISQPFREFMMGQVRDKDLRLFEDLAD 156 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 S R D + +++R+L+P+FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMM Sbjct: 157 PSFRTGD---DGIVDFRVLVPAFMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMM 213 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LPPT ISLPFK++FFVLIDGW++LV +L++SF Sbjct: 214 LPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245 >gi|256029950|ref|ZP_05443564.1| flagellar biosynthesis protein FliP [Brucella pinnipedialis M292/94/1] gi|265986969|ref|ZP_06099526.1| flagellar biosynthetic protein FliP [Brucella pinnipedialis M292/94/1] gi|264659166|gb|EEZ29427.1| flagellar biosynthetic protein FliP [Brucella pinnipedialis M292/94/1] Length = 246 Score = 259 bits (663), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 124/212 (58%), Positives = 167/212 (78%), Gaps = 3/212 (1%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 + S IV+ FG+ T+LSIAP LLIMVT F RF I FS+LR+G+G+ + P ++V+ISLALF Sbjct: 37 AASGQIVQLFGLLTVLSIAPGLLIMVTSFTRFAIAFSLLRSGLGLQTAPASMVMISLALF 96 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 MTFYVM+P DR+ G+QPLM N+IT+ A +++PF FM R+KDL LF D+A Sbjct: 97 MTFYVMAPAFDRAWNNGVQPLMPNEITQEAAFGEISQPFREFMMAQVRDKDLRLFEDLAD 156 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 S R +D + +++R+L+P+FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMM Sbjct: 157 PSFRTSD---DGIVDFRVLVPAFMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMM 213 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LPPT ISLPFK++FFVLIDGW++LV +L++SF Sbjct: 214 LPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245 >gi|254502570|ref|ZP_05114721.1| flagellar biosynthetic protein FliP [Labrenzia alexandrii DFL-11] gi|222438641|gb|EEE45320.1| flagellar biosynthetic protein FliP [Labrenzia alexandrii DFL-11] Length = 246 Score = 259 bits (662), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 128/215 (59%), Positives = 164/215 (76%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 + S S +++ + T+LS+AP +LIMVT F RF+I FS LR+G+G+ + P NL++ISL Sbjct: 31 GEGSASGRVIQMIILLTVLSLAPGILIMVTSFIRFVIAFSFLRSGIGLQTTPGNLILISL 90 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 ALFMTFYVM+PT DR+ E G++PLMNN+ITE A ++ EPF FM + REKDL LF D Sbjct: 91 ALFMTFYVMAPTFDRAWEDGVRPLMNNEITEEEAYVKITEPFREFMLSQVREKDLVLFDD 150 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 +A + + +E R+LIP+FMISELRR FEIGFLI LPFL+IDMIVATI M+MG Sbjct: 151 LAAGRVTDGSADSAEEVELRVLIPAFMISELRRGFEIGFLIALPFLVIDMIVATITMSMG 210 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMMLPPT ISLPFK +FF+LIDGW+LLV +LV+SF Sbjct: 211 MMMLPPTVISLPFKALFFILIDGWNLLVGSLVRSF 245 >gi|294853182|ref|ZP_06793854.1| flagellar biosynthetic protein FliP [Brucella sp. NVSL 07-0026] gi|294818837|gb|EFG35837.1| flagellar biosynthetic protein FliP [Brucella sp. NVSL 07-0026] Length = 246 Score = 258 bits (659), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 123/212 (58%), Positives = 166/212 (78%), Gaps = 3/212 (1%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 + S IV+ FG+ T+LSIAP LLIMVT F RF I FS+LR+G+G+ + P ++V+ISLALF Sbjct: 37 AASGQIVQLFGLLTVLSIAPGLLIMVTSFTRFAIAFSLLRSGLGLQTAPASMVMISLALF 96 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 MTFYVM+P DR+ G+QPLM N+IT+ A +++PF FM R+KDL LF D+ Sbjct: 97 MTFYVMAPAFDRAWNNGVQPLMRNEITQEAAFGEISQPFREFMMAQVRDKDLRLFEDLVD 156 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 S R +D + +++R+L+P+FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMM Sbjct: 157 PSFRTSD---DGIVDFRVLVPAFMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMM 213 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LPPT ISLPFK++FFVLIDGW++LV +L++SF Sbjct: 214 LPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245 >gi|17989425|ref|NP_542058.1| flagellar biosynthesis protein FliP [Brucella melitensis bv. 1 str. 16M] gi|256043079|ref|ZP_05446023.1| flagellar biosynthesis protein FliP [Brucella melitensis bv. 1 str. Rev.1] gi|260564309|ref|ZP_05834794.1| flagellar transporter FliP [Brucella melitensis bv. 1 str. 16M] gi|265989517|ref|ZP_06102074.1| flagellar biosynthetic protein FliP [Brucella melitensis bv. 1 str. Rev.1] gi|17985302|gb|AAL54322.1| flagellar biosynthetic protein flip [Brucella melitensis bv. 1 str. 16M] gi|260151952|gb|EEW87045.1| flagellar transporter FliP [Brucella melitensis bv. 1 str. 16M] gi|263000186|gb|EEZ12876.1| flagellar biosynthetic protein FliP [Brucella melitensis bv. 1 str. Rev.1] Length = 246 Score = 258 bits (659), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 123/212 (58%), Positives = 166/212 (78%), Gaps = 3/212 (1%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 + S IV+ FG+ T+LSIAP LLIMVT F RF I FS+LR+G+G+ + P ++V+ISLALF Sbjct: 37 AASGQIVQLFGLLTVLSIAPGLLIMVTSFTRFAIAFSLLRSGLGLQTAPASMVMISLALF 96 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 MTFYVM+P DR+ G+QPLM N+I + A +++PF FM R+KDL LF D+A Sbjct: 97 MTFYVMAPAFDRAWNNGVQPLMRNEIMQEAAFGEISQPFREFMMAQVRDKDLRLFEDLAD 156 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 S R +D + +++R+L+P+FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMM Sbjct: 157 PSFRTSD---DGIVDFRVLVPAFMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMM 213 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LPPT ISLPFK++FFVLIDGW++LV +L++SF Sbjct: 214 LPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245 >gi|90418387|ref|ZP_01226299.1| flagellar biosynthetic protein fliP [Aurantimonas manganoxydans SI85-9A1] gi|90338059|gb|EAS51710.1| flagellar biosynthetic protein fliP [Aurantimonas manganoxydans SI85-9A1] Length = 257 Score = 257 bits (657), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 134/233 (57%), Positives = 173/233 (74%), Gaps = 8/233 (3%) Query: 21 SSLHDVMNI-PA-DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 S L D+ + PA D + S IV+ FGI TILSIAP LL+MVT F R +I SILRTG+G+ Sbjct: 24 SGLPDLAALLPAGDSTASGRIVQLFGIVTILSIAPGLLVMVTSFTRIVIALSILRTGLGL 83 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 + P NL++ISL+LFMTF+VM+PT DR+ G+QPL+NN+ITE A R++EPF FM Sbjct: 84 QTTPANLILISLSLFMTFFVMAPTFDRAWNDGLQPLLNNEITEEEAFYRISEPFKDFMLT 143 Query: 139 NTREKDLSLFMDMAHSSHR------NTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192 R +DL+LF D+A ++ R ++ R LIP+FMISELRR FEIGFLI+ Sbjct: 144 QVRPEDLTLFGDIAAATSRERVEPEEQGAADERDVDLRELIPAFMISELRRGFEIGFLIV 203 Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LPFL+IDMIVAT+ M+MGMMMLPPT ISLPFK++FF+LIDGW++LV +LV+SF Sbjct: 204 LPFLVIDMIVATLTMSMGMMMLPPTIISLPFKILFFILIDGWNMLVGSLVRSF 256 >gi|328545499|ref|YP_004305608.1| flagellar transport protein FliP [polymorphum gilvum SL003B-26A1] gi|326415240|gb|ADZ72303.1| Flagellar transport protein FliP [Polymorphum gilvum SL003B-26A1] Length = 246 Score = 254 bits (650), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 127/215 (59%), Positives = 159/215 (73%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 + S S IV+ + T+LS+AP +LIMVT F RF + S LR+G+G+ + P NL++ISL Sbjct: 31 GEGSASGRIVQIIALLTVLSVAPGILIMVTSFTRFAVALSFLRSGIGLQTTPGNLILISL 90 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 ALFMTFYVM+PT DR+ G+ PLMNN+I E A R+ EPF FM + RE+DL LF D Sbjct: 91 ALFMTFYVMAPTFDRAWTQGVVPLMNNEIDEQEAYGRITEPFREFMLSQVREQDLVLFDD 150 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 +A +T +E R+LIP+FMISELRR FEIGFLI LPFL+IDMIVATI M+MG Sbjct: 151 LAAGRLTDTPAASPREVELRVLIPAFMISELRRGFEIGFLIALPFLVIDMIVATITMSMG 210 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMMLPPT ISLPFK +FF+LIDGW+LLV +LV+SF Sbjct: 211 MMMLPPTVISLPFKALFFILIDGWNLLVGSLVRSF 245 >gi|306841043|ref|ZP_07473767.1| flagellar biosynthetic protein FliP [Brucella sp. BO2] gi|306288932|gb|EFM60232.1| flagellar biosynthetic protein FliP [Brucella sp. BO2] Length = 204 Score = 254 bits (650), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 121/205 (59%), Positives = 163/205 (79%), Gaps = 3/205 (1%) Query: 41 RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100 + FG+ T+LSIAP LLIMVT F RF I FS+LR+G+G+ + P ++V+ISLALFMTFYVM+ Sbjct: 2 QLFGLLTVLSIAPGLLIMVTSFTRFAIAFSLLRSGLGLQTAPASMVMISLALFMTFYVMA 61 Query: 101 PTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD 160 P DR+ G+QPLM N+IT+ A +++PF FM R+KDL LF D+A S R +D Sbjct: 62 PAFDRAWNNGVQPLMRNEITQEAAFGEISQPFREFMMAQVRDKDLRLFEDLADPSFRTSD 121 Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220 + +++R+L+P+FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT IS Sbjct: 122 ---DGIVDFRVLVPAFMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVIS 178 Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245 LPFK++FFVLIDGW++LV +L++SF Sbjct: 179 LPFKILFFVLIDGWNILVGSLIRSF 203 >gi|170741215|ref|YP_001769870.1| flagellar biosynthesis protein FliP [Methylobacterium sp. 4-46] gi|168195489|gb|ACA17436.1| flagellar biosynthetic protein FliP [Methylobacterium sp. 4-46] Length = 262 Score = 254 bits (648), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 123/221 (55%), Positives = 166/221 (75%), Gaps = 2/221 (0%) Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84 D + P + + S I++ + T+LS+AP LL+MVT F RF++ S LR+G+G+ S P N Sbjct: 43 DALLPPGNGAASGRIIQMVALLTVLSVAPGLLVMVTSFTRFVVALSFLRSGLGLQSTPAN 102 Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144 L ++SL+LFMTFYVM+PT DR+ + G++PL N+I+E A +V +PF FM+++ REKD Sbjct: 103 LFMVSLSLFMTFYVMAPTFDRAWQEGVRPLTENRISEEDAFGKVVDPFREFMQSHVREKD 162 Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204 L F D+A + + + ++ RILIP+FMISELRR FEIGFLI LPFL+IDMIVAT Sbjct: 163 LQTFADLASRNFPKAE--AGEKVDLRILIPAFMISELRRGFEIGFLIALPFLVIDMIVAT 220 Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +VM+MGMMMLPPT ISLPFKV+FFVLIDGW+LLV LV+S+ Sbjct: 221 VVMSMGMMMLPPTVISLPFKVLFFVLIDGWNLLVSGLVRSY 261 >gi|163850069|ref|YP_001638112.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens PA1] gi|163661674|gb|ABY29041.1| flagellar biosynthetic protein FliP [Methylobacterium extorquens PA1] Length = 260 Score = 251 bits (642), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 123/221 (55%), Positives = 163/221 (73%), Gaps = 2/221 (0%) Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84 D + P + + S I++ + T+LS+AP LL+MVT F RF + FS LR+G+G+ S P N Sbjct: 41 DALLPPGNGAASGRIIQLVALLTVLSLAPGLLVMVTSFTRFAVAFSFLRSGLGLQSTPAN 100 Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144 L ++SLALFMTFYVM+PT DR+ G++PL N+I+E A ++ +PF FM + R KD Sbjct: 101 LFLVSLALFMTFYVMAPTFDRAWNEGVKPLQENRISEEEAFGKIVDPFREFMTQHVRPKD 160 Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204 L F D+A + + + I+ RILIP+FMISELRR FEIGFLI+LPFL+ID+IV+T Sbjct: 161 LQTFTDLASRTFPKAE--AGEKIDLRILIPAFMISELRRGFEIGFLIVLPFLVIDIIVST 218 Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IVM+MGMMMLPPT ISLPFKV+FF+LIDGW+LLV LV+SF Sbjct: 219 IVMSMGMMMLPPTVISLPFKVLFFILIDGWNLLVSGLVRSF 259 >gi|240137203|ref|YP_002961672.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens AM1] gi|240007169|gb|ACS38395.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens AM1] Length = 260 Score = 251 bits (641), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 123/221 (55%), Positives = 163/221 (73%), Gaps = 2/221 (0%) Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84 D + P + + S I++ + T+LS+AP LL+MVT F RF + FS LR+G+G+ S P N Sbjct: 41 DALLPPGNGAASGRIIQLVALLTVLSLAPGLLVMVTSFTRFAVAFSFLRSGLGLQSTPAN 100 Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144 L ++SLALFMTFYVM+PT DR+ G++PL N+I+E A ++ +PF FM + R KD Sbjct: 101 LFLVSLALFMTFYVMAPTFDRAWNEGVKPLQENRISEEEAFGKIVDPFREFMTQHVRPKD 160 Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204 L F D+A + + + I+ RILIP+FMISELRR FEIGFLI+LPFL+ID+IV+T Sbjct: 161 LQTFTDLASRTFPKAE--AGEKIDLRILIPAFMISELRRGFEIGFLIVLPFLVIDIIVST 218 Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IVM+MGMMMLPPT ISLPFKV+FF+LIDGW+LLV LV+SF Sbjct: 219 IVMSMGMMMLPPTVISLPFKVLFFILIDGWNLLVSGLVRSF 259 >gi|218528672|ref|YP_002419488.1| flagellar biosynthesis protein FliP [Methylobacterium chloromethanicum CM4] gi|218520975|gb|ACK81560.1| flagellar biosynthetic protein FliP [Methylobacterium chloromethanicum CM4] Length = 260 Score = 251 bits (641), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 123/221 (55%), Positives = 163/221 (73%), Gaps = 2/221 (0%) Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84 D + P + + S I++ + T+LS+AP LL+MVT F RF + FS LR+G+G+ S P N Sbjct: 41 DALLPPGNGAASGRIIQLVALLTVLSLAPGLLVMVTSFTRFAVAFSFLRSGLGLQSTPAN 100 Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144 L ++SLALFMTFYVM+PT DR+ G++PL N+I+E A ++ +PF FM + R KD Sbjct: 101 LFLVSLALFMTFYVMAPTFDRAWNEGVKPLQENRISEEEAFGKIVDPFREFMTQHVRPKD 160 Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204 L F D+A + + + I+ RILIP+FMISELRR FEIGFLI+LPFL+ID+IV+T Sbjct: 161 LQTFTDLASRTFPKAE--AGEKIDLRILIPAFMISELRRGFEIGFLIVLPFLVIDIIVST 218 Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IVM+MGMMMLPPT ISLPFKV+FF+LIDGW+LLV LV+SF Sbjct: 219 IVMSMGMMMLPPTVISLPFKVLFFILIDGWNLLVSGLVRSF 259 >gi|188579873|ref|YP_001923318.1| flagellar biosynthesis protein FliP [Methylobacterium populi BJ001] gi|179343371|gb|ACB78783.1| flagellar biosynthetic protein FliP [Methylobacterium populi BJ001] Length = 253 Score = 250 bits (639), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 123/221 (55%), Positives = 162/221 (73%), Gaps = 2/221 (0%) Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84 D + P + + S I++ + T+LS+AP LL+M+T F RF + FS LR+G+G+ S P N Sbjct: 34 DALLPPGNGAASGRIIQLVALLTVLSLAPGLLVMMTSFTRFAVAFSFLRSGLGLQSTPAN 93 Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144 L ++SLALFMTFYVM+PT DR+ G++PL N+I E A ++ EPF FM + R KD Sbjct: 94 LFLVSLALFMTFYVMAPTFDRAWNEGVKPLQENRIGEEEAFGKIVEPFREFMTQHVRPKD 153 Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204 L F D+A + + + I+ RILIP+FMISELRR FEIGFLI+LPFL+ID+IV+T Sbjct: 154 LQTFTDLASRNFPKAE--AGEKIDLRILIPAFMISELRRGFEIGFLIVLPFLVIDIIVST 211 Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IVM+MGMMMLPPT ISLPFKV+FF+LIDGW+LLV LV+SF Sbjct: 212 IVMSMGMMMLPPTVISLPFKVLFFILIDGWNLLVSGLVRSF 252 >gi|254559215|ref|YP_003066310.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens DM4] gi|254266493|emb|CAX22257.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens DM4] Length = 260 Score = 249 bits (636), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 122/221 (55%), Positives = 162/221 (73%), Gaps = 2/221 (0%) Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84 D + P + + S I++ + T+LS+AP LL+MVT F RF + S LR+G+G+ S P N Sbjct: 41 DALLPPGNGAASGRIIQLVALLTVLSLAPGLLVMVTSFTRFAVALSFLRSGLGLQSTPAN 100 Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144 L ++SLALFMTFYVM+PT DR+ G++PL N+I+E A ++ +PF FM + R KD Sbjct: 101 LFLVSLALFMTFYVMAPTFDRAWNEGVKPLQENRISEEEAFGKIVDPFREFMTQHVRPKD 160 Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204 L F D+A + + + I+ RILIP+FMISELRR FEIGFLI+LPFL+ID+IV+T Sbjct: 161 LQTFTDLASRTFPKAE--AGEKIDLRILIPAFMISELRRGFEIGFLIVLPFLVIDIIVST 218 Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IVM+MGMMMLPPT ISLPFKV+FF+LIDGW+LLV LV+SF Sbjct: 219 IVMSMGMMMLPPTVISLPFKVLFFILIDGWNLLVSGLVRSF 259 >gi|170748101|ref|YP_001754361.1| flagellar biosynthetic protein FliP [Methylobacterium radiotolerans JCM 2831] gi|170654623|gb|ACB23678.1| flagellar biosynthetic protein FliP [Methylobacterium radiotolerans JCM 2831] Length = 245 Score = 248 bits (633), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 133/248 (53%), Positives = 173/248 (69%), Gaps = 7/248 (2%) Query: 1 MIRYCFFA--LFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIM 58 M+R F A L LV SL V+ P + S+S +++ + T+LSIAP LL+M Sbjct: 1 MLRRVFLASPLLLVATAATAQSFSLDQVLP-PGNGSVSGRMIQLIALMTVLSIAPGLLVM 59 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 VT F RF++ S LR+G+G+ S P NLV+ISL+LFMTFYVM PT DR+ + G++PL N+ Sbjct: 60 VTSFTRFVVALSFLRSGLGLQSAPANLVLISLSLFMTFYVMGPTFDRAWQDGVRPLTENR 119 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSS-HRNTDITKNDHIEYRILIPSFM 177 ITE A +V PF FM + R KDL F ++A S+ + D + D RILIP+FM Sbjct: 120 ITEEEAFAKVTAPFRDFMLAHVRPKDLDTFAEIAASNLSKAPDGGRTD---LRILIPAFM 176 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 ISELRR FEIGFLI LPFL+IDM++A +VM+MGMMMLPPT ISLPFK++FFVLIDGW++L Sbjct: 177 ISELRRGFEIGFLIALPFLVIDMVIAVLVMSMGMMMLPPTVISLPFKILFFVLIDGWNML 236 Query: 238 VENLVKSF 245 V LVKS+ Sbjct: 237 VSGLVKSY 244 >gi|254473298|ref|ZP_05086695.1| flagellar biosynthetic protein FliP [Pseudovibrio sp. JE062] gi|211957414|gb|EEA92617.1| flagellar biosynthetic protein FliP [Pseudovibrio sp. JE062] Length = 251 Score = 248 bits (632), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 131/242 (54%), Positives = 173/242 (71%), Gaps = 4/242 (1%) Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPA-DLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63 FALF V P + +L D++ PA S S I++ I T+LS+AP +LIMVT F Sbjct: 12 SLFALFWVAPASA-QEINLSDLL--PAGQASASGRIIQYVMILTVLSLAPGILIMVTSFT 68 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 RF++ S LR+G+G+ + P N+++ISLALFMTFYVM+PT D + + G+QPL+ +I+E Sbjct: 69 RFVVALSFLRSGIGLQTTPANIILISLALFMTFYVMAPTFDAAWKNGLQPLIKEEISEEV 128 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 A + + +PF FM +N REKDL LF D+A S+ + ++ R+LIP+FMISELRR Sbjct: 129 AYEEMTKPFRRFMLDNVREKDLVLFDDLAVSAFNYEKDAPVEELDLRVLIPAFMISELRR 188 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 FEIGFLI LPF++IDMIVATI M+MGMMMLPPT ISLPFKV+FFVLIDGW LL L++ Sbjct: 189 GFEIGFLIALPFVVIDMIVATITMSMGMMMLPPTVISLPFKVLFFVLIDGWYLLTGGLIR 248 Query: 244 SF 245 SF Sbjct: 249 SF 250 >gi|182680542|ref|YP_001834688.1| flagellar biosynthetic protein FliP [Beijerinckia indica subsp. indica ATCC 9039] gi|182636425|gb|ACB97199.1| flagellar biosynthetic protein FliP [Beijerinckia indica subsp. indica ATCC 9039] Length = 246 Score = 248 bits (632), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 119/216 (55%), Positives = 164/216 (75%), Gaps = 1/216 (0%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P + ++S I++ + TILS+AP LL+MVT F RF I S LR+G+G+ S P NLV+IS Sbjct: 31 PGNGTVSGRIIQLVALLTILSVAPGLLVMVTSFTRFAIALSFLRSGLGLQSTPANLVLIS 90 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 L+LFMTFYVMSP +++ + G++P+M+NQ+TE A ++ +PF FM R KDL LF Sbjct: 91 LSLFMTFYVMSPVFEKAWDGGVKPMMDNQLTEQEAFPKIIQPFREFMSGQVRGKDLKLFT 150 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 D+A + + D T ++ IE RILIP+FMISELRR FE+GFLI+LPFL+IDMI + I M+M Sbjct: 151 DLAKENFPSVDQTGSE-IELRILIPAFMISELRRGFEMGFLIVLPFLVIDMITSAITMSM 209 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMMLPPT I+LP KV+FF+LIDGW++L+ +LV+S+ Sbjct: 210 GMMMLPPTVIALPVKVLFFILIDGWNMLIGSLVRSY 245 >gi|296445179|ref|ZP_06887139.1| flagellar biosynthetic protein FliP [Methylosinus trichosporium OB3b] gi|296257353|gb|EFH04420.1| flagellar biosynthetic protein FliP [Methylosinus trichosporium OB3b] Length = 243 Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 119/212 (56%), Positives = 159/212 (75%), Gaps = 3/212 (1%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 + S IV+ + T+LSIAP LLIMVT F RF I S LR+G+G+ S P NLV+ISLALF Sbjct: 34 AASGKIVQLLAVLTVLSIAPGLLIMVTSFTRFAIALSFLRSGLGLQSTPANLVLISLALF 93 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 MTFYVM+PT + + + G++PLM+ +ITE A +++++PF FM N REKD+ LF ++ Sbjct: 94 MTFYVMAPTFEAAWQDGLKPLMDQKITEVEAFEKISQPFRKFMIANVREKDIKLFDSLSR 153 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 D D + ++L P+FMISELRR FEIGFLI+LPFL+IDMIVA + M+MGMMM Sbjct: 154 EPRPAGDY---DKLGLQVLAPAFMISELRRGFEIGFLIVLPFLVIDMIVAVVTMSMGMMM 210 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LPPT+ISLP KV+FF+LIDGW+LLV +L++S+ Sbjct: 211 LPPTAISLPVKVLFFILIDGWNLLVGSLIRSY 242 >gi|217976231|ref|YP_002360378.1| flagellar biosynthetic protein FliP [Methylocella silvestris BL2] gi|217501607|gb|ACK49016.1| flagellar biosynthetic protein FliP [Methylocella silvestris BL2] Length = 247 Score = 241 bits (614), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 113/216 (52%), Positives = 161/216 (74%), Gaps = 3/216 (1%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P + ++ I++ + T+LSIAP +L+M T F RF++ S LR+G+G+ S P NL++IS Sbjct: 34 PGGGAAASRIIQLVVLLTVLSIAPGILVMTTSFTRFVVALSFLRSGIGLQSTPANLILIS 93 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 L+LFMTFYVM+PT +R+ + G++PLM+N++TE A ++ EPF FM + REKDL LF Sbjct: 94 LSLFMTFYVMAPTFERAWDAGVKPLMDNKLTEEQAFGKIVEPFRDFMMSQVREKDLKLFE 153 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 D+A + + E R LIP+FMISELRR FEIGFLI LPFL+IDMIV+T+ M+M Sbjct: 154 DLAGEKFKTKSQSTG---EIRTLIPAFMISELRRGFEIGFLIALPFLVIDMIVSTLTMSM 210 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMMLPP+ I+LP K++FF+LIDGW+LL+ +L++S+ Sbjct: 211 GMMMLPPSVIALPIKILFFILIDGWNLLIGSLIRSY 246 >gi|304392500|ref|ZP_07374440.1| flagellar biosynthetic protein FliP [Ahrensia sp. R2A130] gi|303295130|gb|EFL89490.1| flagellar biosynthetic protein FliP [Ahrensia sp. R2A130] Length = 259 Score = 240 bits (612), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 127/260 (48%), Positives = 171/260 (65%), Gaps = 17/260 (6%) Query: 1 MIRYCFFALFLVTPELVFAKSS----------LHDVMNIPADLSISTWIVRTFGIFTILS 50 MI AL L P +A++S L S+S I++ FG+ T+LS Sbjct: 1 MIAGLLLALVLTGP--AYAQTSPDVLGDLSRLLGSGTEATGSPSVSGQIIQLFGLVTVLS 58 Query: 51 IAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMG 110 +AP +LI+VT F RFII FSILR G+G+ S P NL++ISL+LFMTF+VMS T + + G Sbjct: 59 LAPGILIVVTSFTRFIIAFSILRMGLGLQSTPANLILISLSLFMTFHVMSATFQTAWDKG 118 Query: 111 IQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT-----KND 165 PL +ITE A+ ++ EPF FM N R +D++LF D+ + + D Sbjct: 119 AGPLSRGEITEAQAVTQIIEPFRTFMLANVRGEDIALFTDLQNERAVADGVAVPETAAAD 178 Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225 + L+P+FMISE+RR FEIGFLI+LPFL+ID+IVATIVMAMGMMMLPPT ++LPFK+ Sbjct: 179 EVAITALVPAFMISEIRRGFEIGFLILLPFLVIDLIVATIVMAMGMMMLPPTVVALPFKI 238 Query: 226 IFFVLIDGWSLLVENLVKSF 245 +FFVLIDGW+LLV +L++SF Sbjct: 239 LFFVLIDGWNLLVGSLLRSF 258 >gi|27381978|ref|NP_773507.1| flagellar biosynthesis protein FliP [Bradyrhizobium japonicum USDA 110] gi|27355148|dbj|BAC52132.1| flagellar biosynthetic protein [Bradyrhizobium japonicum USDA 110] Length = 246 Score = 238 bits (608), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 126/232 (54%), Positives = 170/232 (73%), Gaps = 2/232 (0%) Query: 14 PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73 PE+ FA+ + + P + S S I++ + T+LS+AP LLIMVT F RF + S LR Sbjct: 16 PEMAFAQIPDLNSLLPPGNGSTSGRIIQLMALITVLSVAPGLLIMVTSFTRFAVALSFLR 75 Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133 +G+G+ + P NLV++SLALFMTFYVM+PT DR+ E G+QPLM N+I+E A ++ +PF Sbjct: 76 SGLGLQTTPANLVLVSLALFMTFYVMAPTFDRAWETGVQPLMKNEISEEEAYLKITDPFR 135 Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193 FM + R+KDL F +A S R + I+ R++IP+FMISELRRSFEIGFLI+L Sbjct: 136 EFMLAHVRDKDLQTFEALAAESFRKK--FDDKRIDLRVIIPAFMISELRRSFEIGFLIML 193 Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 PFL+IDMIVAT+ M+MGMMM+PPT ++LPFK++FFVLIDGW+LL LV+SF Sbjct: 194 PFLVIDMIVATLTMSMGMMMMPPTILALPFKMLFFVLIDGWNLLASGLVRSF 245 >gi|114765260|ref|ZP_01444392.1| flagellar biosynthesis protein P [Pelagibaca bermudensis HTCC2601] gi|114542395|gb|EAU45423.1| flagellar biosynthesis protein P [Roseovarius sp. HTCC2601] Length = 282 Score = 238 bits (608), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 117/220 (53%), Positives = 162/220 (73%), Gaps = 7/220 (3%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 ++S I++ T+LS+AP LL+++T F RF+IVFS+LR+ +G+ PPN+V+ S+ALF Sbjct: 57 TLSGRIIQLIAAMTVLSLAPGLLVIMTSFTRFVIVFSMLRSALGLNQSPPNMVLTSMALF 116 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 MTF+VM P + + E G+QPLM N ITE A+ RV EPF +FM NTREKDL+LF D+A Sbjct: 117 MTFFVMQPVFEDAWEGGVQPLMANSITEEQALMRVGEPFKLFMYANTREKDLALFRDIAA 176 Query: 154 SSHRNTDITKN-------DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 S ++ + + +R L+P+FMISELRR+F IGFLI LPFL+ID+IVA+++ Sbjct: 177 RSEGTVPPEESAPAPQSAEDVGWRELVPAFMISELRRAFSIGFLIYLPFLVIDLIVASVL 236 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 M+ GMMMLPP ISLPFKVIFFVLIDGW +L +L++S++ Sbjct: 237 MSAGMMMLPPVLISLPFKVIFFVLIDGWYMLAGSLMESYL 276 >gi|148256782|ref|YP_001241367.1| flagellar biosynthesis protein FliP [Bradyrhizobium sp. BTAi1] gi|146408955|gb|ABQ37461.1| Flagellar transport protein FliP [Bradyrhizobium sp. BTAi1] Length = 234 Score = 238 bits (607), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 113/216 (52%), Positives = 159/216 (73%), Gaps = 4/216 (1%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P + ++ V+ + T+LSIAP +LIM+T F R ++V S+LRT MG + PPN VII+ Sbjct: 21 PGNGGVTERAVQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLRTAMGTATAPPNAVIIA 80 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 LA+F+T +VM P L +S + G++PL+ NQI A+QR + P FM+ N REKDL LFM Sbjct: 81 LAMFLTAFVMGPVLQKSYDDGVRPLIENQIGVEDALQRASVPLRGFMQKNVREKDLKLFM 140 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 D++ + T D + RIL+P+FMISEL+R+FEIGFL+ LPFLIID++VA+++M+M Sbjct: 141 DLSGEAPPATP----DELSLRILVPAFMISELKRAFEIGFLLFLPFLIIDLVVASVLMSM 196 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMMLPP +SLPFK+IFFVL+DGWSL+ +LV+S+ Sbjct: 197 GMMMLPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY 232 >gi|27380927|ref|NP_772456.1| flagellar biosynthesis protein FliP [Bradyrhizobium japonicum USDA 110] gi|27354093|dbj|BAC51081.1| flagellar biosynthetic protein [Bradyrhizobium japonicum USDA 110] Length = 250 Score = 238 bits (606), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 114/212 (53%), Positives = 158/212 (74%), Gaps = 4/212 (1%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 ++ ++ + T+LSIAP +LIM+T F R ++V S+LRT MG + PPN VII+LA+F Sbjct: 41 GVTERAIQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLRTAMGTATAPPNSVIIALAMF 100 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 +TF+VM P L +S + GI+PL+ NQI A+QR + P FM+ N REKDL LF+D++ Sbjct: 101 LTFFVMGPVLQKSYDEGIRPLVANQIGVEDALQRASVPLRGFMQKNVREKDLKLFLDLSG 160 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 T D + RILIP+FMISEL+R+FEIGFL+ LPFLIID++VA+++M+MGMMM Sbjct: 161 EPPPATP----DELALRILIPAFMISELKRAFEIGFLLFLPFLIIDLVVASVLMSMGMMM 216 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LPP +ISLPFK+IFFVL+DGWSL+ +LV+S+ Sbjct: 217 LPPATISLPFKLIFFVLVDGWSLVAGSLVQSY 248 >gi|84502361|ref|ZP_01000497.1| flagellar biosynthesis protein [Oceanicola batsensis HTCC2597] gi|84389173|gb|EAQ01970.1| flagellar biosynthesis protein [Oceanicola batsensis HTCC2597] Length = 277 Score = 238 bits (606), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 116/218 (53%), Positives = 162/218 (74%), Gaps = 5/218 (2%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 +++ +++ T+LSIAP LL+++T F RF+IVFS+LR+ +G+ PPN+V+ S+ALF Sbjct: 54 TLAGRLIQLVAAMTVLSIAPGLLVIMTSFTRFVIVFSMLRSALGLNQTPPNMVLSSMALF 113 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA- 152 MTF+VM P + + EMGI PL+NN ITE A++R AEPF FM NTREKDL+LF D+A Sbjct: 114 MTFFVMQPVFEDAWEMGIDPLINNVITEEQALERTAEPFRTFMLANTREKDLALFQDIAA 173 Query: 153 ----HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208 + N + ++ +R L+P+FMISELRR+F IGFLI LPF+ ID+I+A+I+M+ Sbjct: 174 RSAGQTGADNLQVDEDGLPSWRSLVPAFMISELRRAFSIGFLIYLPFVAIDLIIASILMS 233 Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 GMMMLPP ISLPFKVIFFVLIDGW +L +L++S++ Sbjct: 234 AGMMMLPPVLISLPFKVIFFVLIDGWYMLAGSLMESYL 271 >gi|146341897|ref|YP_001206945.1| flagellar biosynthesis protein FliP [Bradyrhizobium sp. ORS278] gi|146194703|emb|CAL78728.1| Flagellar transport protein FliP [Bradyrhizobium sp. ORS278] Length = 226 Score = 236 bits (603), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 112/211 (53%), Positives = 158/211 (74%), Gaps = 4/211 (1%) Query: 35 ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFM 94 ++ V+ + T+LSIAP +L+M+T F R ++V S+LRT MG + PPN VII+LA+F+ Sbjct: 18 VTERAVQLIALLTVLSIAPSILVMMTSFTRIVVVLSLLRTAMGTATAPPNSVIIALAMFL 77 Query: 95 TFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154 T +VM P L +S + G++PL+ NQIT A+QR + P FM+ N REKDL LFMD++ Sbjct: 78 TAFVMGPVLQKSYDDGVRPLIENQITVEDALQRASVPLRGFMQKNVREKDLKLFMDLSGE 137 Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214 + T D + RIL+P+FMISEL+R+FEIGFL+ LPFLIID++VA+++M+MGMMML Sbjct: 138 APPATP----DELSLRILVPAFMISELKRAFEIGFLLFLPFLIIDLVVASVLMSMGMMML 193 Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 PP +SLPFK+IFFVL+DGWSL+ +LV+S+ Sbjct: 194 PPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY 224 >gi|115523185|ref|YP_780096.1| flagellar biosynthesis protein FliP [Rhodopseudomonas palustris BisA53] gi|115517132|gb|ABJ05116.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris BisA53] Length = 244 Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 122/213 (57%), Positives = 160/213 (75%), Gaps = 2/213 (0%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 S S I++ + T+LS+AP LLIMVT F RF++ S LRTG+G+ + P N+V+ISLALF Sbjct: 34 SASGRIIQMVALLTVLSLAPGLLIMVTSFTRFVVALSFLRTGLGLQTTPANIVMISLALF 93 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 +TFYVM+PT DR+ GIQPLM N+ITE A RV EPF FM R+KDL F ++A Sbjct: 94 LTFYVMAPTFDRAWREGIQPLMQNEITEKEAYARVTEPFREFMLAQVRDKDLQTFENLAA 153 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 S R + ++ R++IP+FM+SELRR+FEIGFLI++PFL+IDMIVAT+ M+MGMMM Sbjct: 154 ESLRAKP--DGERVDLRVIIPAFMVSELRRAFEIGFLIVMPFLVIDMIVATLTMSMGMMM 211 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +PPT +LPFKV+FFVLIDGW+LL LV+SF+ Sbjct: 212 MPPTVFALPFKVLFFVLIDGWNLLAVGLVRSFL 244 >gi|323136548|ref|ZP_08071629.1| flagellar biosynthetic protein FliP [Methylocystis sp. ATCC 49242] gi|322397865|gb|EFY00386.1| flagellar biosynthetic protein FliP [Methylocystis sp. ATCC 49242] Length = 243 Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 120/236 (50%), Positives = 166/236 (70%), Gaps = 4/236 (1%) Query: 11 LVTPELVFAKSSLHDVMNIP-ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVF 69 ++TP + FA L +P S S I++ G T+LSIAP LLIMVT F RF I Sbjct: 10 MMTPSIAFAAEGLDLNALLPNGAASSSGKIIQLLGALTVLSIAPGLLIMVTSFTRFAIAL 69 Query: 70 SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129 S LRTG+G+ S P NLV+ISLALFMTFYVM+P ++++ G++PL+ N+ITE A ++++ Sbjct: 70 SFLRTGLGLQSTPANLVLISLALFMTFYVMTPAMNQAWSSGVKPLVENKITEVEAFEKIS 129 Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189 PF FM + R+KD+ LF D+ T+ ++ +LIP+FMISELRR FEIGF Sbjct: 130 APFREFMIAHVRDKDIRLFEDLRKVEPSTKGKTE---LQLSVLIPAFMISELRRGFEIGF 186 Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LI++PFL ID+IVA + M+MGMMMLPP +ISLP K++FF+LIDGW+LL +L++S+ Sbjct: 187 LIVVPFLAIDIIVAVLTMSMGMMMLPPATISLPAKILFFILIDGWNLLAGSLIRSY 242 >gi|312115243|ref|YP_004012839.1| flagellar biosynthetic protein FliP [Rhodomicrobium vannielii ATCC 17100] gi|311220372|gb|ADP71740.1| flagellar biosynthetic protein FliP [Rhodomicrobium vannielii ATCC 17100] Length = 265 Score = 234 bits (596), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 112/210 (53%), Positives = 157/210 (74%), Gaps = 6/210 (2%) Query: 36 STWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMT 95 S+ I++ + T+LS+AP +LIMVTCF RF+I S LR G+G+ S P N++++SLALFMT Sbjct: 61 SSRIIQLVLVITVLSLAPGILIMVTCFTRFVIALSFLRVGLGLPSTPANIILVSLALFMT 120 Query: 96 FYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSS 155 + MSPT D++ E G++P M+ +++E A Q++ +PF FM N R+KD+ LF M+ + Sbjct: 121 AFTMSPTFDKAWETGVKPFMDKKLSEDAAFQKITDPFREFMMANVRQKDIDLFAGMSPQA 180 Query: 156 HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215 + R LIP+FMISELRR FEIGFLI+LPFL+ID+I +T++MAMGMMM+ Sbjct: 181 ------SAEGATALRTLIPAFMISELRRGFEIGFLIMLPFLVIDLIASTVLMAMGMMMVS 234 Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 PT++SLPFKV+FF+LIDGW+LLV NLV+SF Sbjct: 235 PTTVSLPFKVLFFILIDGWNLLVGNLVRSF 264 >gi|90423026|ref|YP_531396.1| flagellar biosynthesis protein FliP [Rhodopseudomonas palustris BisB18] gi|90105040|gb|ABD87077.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris BisB18] Length = 254 Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 112/211 (53%), Positives = 157/211 (74%), Gaps = 4/211 (1%) Query: 35 ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFM 94 ++ ++ + T+LSIAP +LIM+T F R ++V S+LRT +G + PPN VI++LALF+ Sbjct: 45 VTERAIQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLRTALGTATAPPNSVILALALFL 104 Query: 95 TFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154 T +VM P L +S + GI+PL+ NQIT A+QR P FM+ N REKDL LFMD+++ Sbjct: 105 TAFVMGPVLQKSYDDGIKPLIANQITVEEALQRAVVPLRGFMQKNVREKDLKLFMDLSNE 164 Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214 T D + RIL+P+FMISEL+R+FEIGFL+ LPFLIID++VA+++M+MGMMML Sbjct: 165 PIPATP----DDLSLRILVPAFMISELKRAFEIGFLLFLPFLIIDLVVASVLMSMGMMML 220 Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 PP +SLPFK+IFFVL+DGWSL+ +LV+S+ Sbjct: 221 PPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY 251 >gi|83944189|ref|ZP_00956645.1| flagellar biosynthesis protein [Sulfitobacter sp. EE-36] gi|83955110|ref|ZP_00963766.1| flagellar biosynthesis protein [Sulfitobacter sp. NAS-14.1] gi|83840439|gb|EAP79612.1| flagellar biosynthesis protein [Sulfitobacter sp. NAS-14.1] gi|83845056|gb|EAP82937.1| flagellar biosynthesis protein [Sulfitobacter sp. EE-36] Length = 274 Score = 233 bits (594), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 114/213 (53%), Positives = 159/213 (74%), Gaps = 1/213 (0%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 S+S +++ F I T+LS+AP LL+MVT F RF+IVFS+LR +G+ PPN+V+ ++ALF Sbjct: 61 SLSGRLIQLFAIITVLSVAPGLLVMVTSFTRFVIVFSMLRLALGLNQTPPNIVLNAMALF 120 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 MTF+VM P + + E G+ PLM N I E A++ ++EPF+ FM NTR+KDL LF D+A Sbjct: 121 MTFFVMQPVFEDAWEGGLVPLMENAIIEEQAVRNISEPFYNFMLVNTRDKDLQLFTDIAD 180 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 + +D +R+L+PSFMISELRR+F IGFLI LPF+ ID+IVA+++M+ GMMM Sbjct: 181 EASPPSD-GPAALPSWRVLVPSFMISELRRAFTIGFLIYLPFIAIDLIVASVLMSAGMMM 239 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 LPP +SLPFKVIFFVLIDGW +L +L++S++ Sbjct: 240 LPPVLVSLPFKVIFFVLIDGWYMLAGSLIQSYV 272 >gi|90422616|ref|YP_530986.1| flagellar biosynthesis protein FliP [Rhodopseudomonas palustris BisB18] gi|90104630|gb|ABD86667.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris BisB18] Length = 248 Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 120/217 (55%), Positives = 162/217 (74%), Gaps = 2/217 (0%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P S S I++ + T+LS+AP LLIMVT F RF++ S LRTG+G+ + P N+V+IS Sbjct: 34 PGGGSASGRIIQMVALLTVLSLAPGLLIMVTSFTRFVVALSFLRTGLGLQTTPANIVMIS 93 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 LALF+TFYVM+PT DR+ G+QPLM N+ITE A RV EPF FM + R+KDL F Sbjct: 94 LALFLTFYVMAPTFDRAWRDGLQPLMQNEITEKEAYSRVTEPFREFMLAHVRDKDLQTFE 153 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 +A S R + + ++ R++IP+FM+SELRR+FEIGFLI++PFL+IDM+VAT+ M+M Sbjct: 154 SLAAESLRIRP--EGEKVDLRVIIPAFMVSELRRAFEIGFLIVMPFLVIDMVVATLTMSM 211 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 GMMM+PPT +LPFKV+FFVLIDGW+LL LV+S++ Sbjct: 212 GMMMMPPTVFALPFKVLFFVLIDGWNLLAVGLVRSYL 248 >gi|209964214|ref|YP_002297129.1| flagellar biosynthesis protein FliP [Rhodospirillum centenum SW] gi|209957680|gb|ACI98316.1| flagellar biosynthesis protein FliP [Rhodospirillum centenum SW] Length = 255 Score = 231 bits (588), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 110/207 (53%), Positives = 155/207 (74%), Gaps = 4/207 (1%) Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98 I++ + T+LS+AP +LIM+TCF R +IV S LR+ MG VPPN V++SLALF+TF++ Sbjct: 50 IIQLVALLTVLSLAPSILIMMTCFVRIVIVLSFLRSAMGTQQVPPNQVLVSLALFLTFFI 109 Query: 99 MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 M+P + S GI+PL+N I E TA R EPF FM + RE+DL LF+D+A + Sbjct: 110 MAPVMQESYANGIRPLINEDIDELTAFNRAVEPFHGFMMKHVRERDLQLFLDIAKTG--- 166 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 + + +++IP+FM+SEL+R+FEIGFL+ +PFL+IDM+VA+++M+MGMMMLPPT Sbjct: 167 -PVADPKDVPLQVVIPAFMLSELKRAFEIGFLVFVPFLVIDMVVASVLMSMGMMMLPPTL 225 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 I+LPFKVIFFVL+DGW L+V +LV+SF Sbjct: 226 IALPFKVIFFVLVDGWYLIVGSLVQSF 252 >gi|115523568|ref|YP_780479.1| flagellar biosynthesis protein FliP [Rhodopseudomonas palustris BisA53] gi|115517515|gb|ABJ05499.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris BisA53] Length = 254 Score = 231 bits (588), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 109/212 (51%), Positives = 156/212 (73%), Gaps = 4/212 (1%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 ++ ++ + T+LSIAP +LIM+T F R ++V S+LRT +G + PPN VI++LALF Sbjct: 43 GVTERAIQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLRTALGTATAPPNAVILALALF 102 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 +T +VM P L +S + GI+PL+ NQIT A +R +P FM+ N REKDL LF+D++ Sbjct: 103 LTGFVMGPVLQKSYDDGIKPLVANQITVEQAFERAVDPLRGFMQKNVREKDLKLFLDLSG 162 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 T D + RIL+P+FMISEL+R+FEIGFL+ LPFL+ID++VA+++M+MGMMM Sbjct: 163 EPPPATP----DAMSLRILVPAFMISELKRAFEIGFLLFLPFLVIDLVVASVLMSMGMMM 218 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LPP +SLPFK+IFFVL+DGWSL+ +LV+S+ Sbjct: 219 LPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY 250 >gi|85716540|ref|ZP_01047510.1| flagellar biosynthesis protein [Nitrobacter sp. Nb-311A] gi|85696541|gb|EAQ34429.1| flagellar biosynthesis protein [Nitrobacter sp. Nb-311A] Length = 251 Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 110/212 (51%), Positives = 157/212 (74%), Gaps = 4/212 (1%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 +S ++ + T+LSIAP +LIM+T F R ++V S+LRT +G + PPN VII+LA+F Sbjct: 42 GVSERAIQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLRTALGTATAPPNSVIIALAVF 101 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 +T +VM PTL +S + GI+PL+ N+IT A+QR + P FM+ N RE+DL LFMD++ Sbjct: 102 LTAFVMGPTLQKSYDDGIKPLVANEITVEEALQRASVPLRGFMQKNVREQDLKLFMDLSG 161 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 T + RIL+P+FMISEL+R+FEIGFL+ LPFLIID++VA+++M+MGMMM Sbjct: 162 EPPPKTP----AELSLRILMPAFMISELKRAFEIGFLLFLPFLIIDLVVASVLMSMGMMM 217 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LPP +SLPFK+IFFVL+DGW+L+ +LV+S+ Sbjct: 218 LPPVVVSLPFKLIFFVLVDGWALVAGSLVQSY 249 >gi|288958044|ref|YP_003448385.1| flagellar biosynthetic protein [Azospirillum sp. B510] gi|288910352|dbj|BAI71841.1| flagellar biosynthetic protein [Azospirillum sp. B510] Length = 266 Score = 230 bits (586), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 113/215 (52%), Positives = 158/215 (73%), Gaps = 4/215 (1%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 A + + IV+T G+ T+LS+AP +LIM+T F R +IV S LR +G+ VPP V++SL Sbjct: 53 AGGTATGRIVQTIGLITVLSLAPSILIMMTAFTRIVIVLSFLRNALGVQQVPPTTVMMSL 112 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 ALF+TF+VM+P +RS GIQPLMN +I E A +R P FM ++T EKDL LFMD Sbjct: 113 ALFLTFFVMAPVFERSYTQGIQPLMNQEIDEMEAFRRTVAPLRDFMLHHTAEKDLRLFMD 172 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 MA R ++ + + + +L+P+FMISE++R FEIGFL+ LPFLIIDM+V++I+M+MG Sbjct: 173 MA----RLQNVQEPNDMPLHVLVPAFMISEIKRGFEIGFLLFLPFLIIDMVVSSILMSMG 228 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMMLPPT +++PFK+IFFVL+DGW L+ +L +SF Sbjct: 229 MMMLPPTMVAIPFKIIFFVLVDGWYLIAGSLARSF 263 >gi|154253010|ref|YP_001413834.1| flagellar biosynthetic protein FliP [Parvibaculum lavamentivorans DS-1] gi|154156960|gb|ABS64177.1| flagellar biosynthetic protein FliP [Parvibaculum lavamentivorans DS-1] Length = 248 Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 110/218 (50%), Positives = 159/218 (72%), Gaps = 4/218 (1%) Query: 28 NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87 ++ +L ++ IV+ + T+LS+AP +LIMVT F R I+V S+LRT +GM PPN V+ Sbjct: 33 DLSDNLGLTDHIVQIVALVTVLSLAPSILIMVTSFVRIIVVLSLLRTALGMQQSPPNAVL 92 Query: 88 ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147 +SLALF+T +VM+PT + GI+PLMN QI A +R + PF FM + R++DL L Sbjct: 93 VSLALFLTAFVMTPTFTTAYNEGIEPLMNQQIETAEAFERSSVPFKTFMLSQVRKQDLQL 152 Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 F+D++ + + I ++++P+FMISELRR+FEIGFL+ LPF++IDM+VA+++M Sbjct: 153 FVDLSQTEQPE----EATDIGLQVIVPAFMISELRRAFEIGFLVFLPFIVIDMVVASVLM 208 Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MGMMMLPP ISLPFK+IFFVL+DGWSL+ +LV+SF Sbjct: 209 SMGMMMLPPVIISLPFKLIFFVLVDGWSLIAGSLVQSF 246 >gi|92116943|ref|YP_576672.1| flagellar biosynthesis protein FliP [Nitrobacter hamburgensis X14] gi|91799837|gb|ABE62212.1| flagellar biosynthetic protein FliP [Nitrobacter hamburgensis X14] Length = 251 Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 117/246 (47%), Positives = 169/246 (68%), Gaps = 7/246 (2%) Query: 3 RYCFFALFLVTPELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 R F L L+ + + D+ + + ++ ++ + T+LSIAP +LIM+ Sbjct: 8 RRVLFVLVLIAAGSLADPAFAQDISINLGGAGNGGVTERAIQLIALLTVLSIAPSILIMM 67 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R ++V S+LRT +G + PPN VII+LA+F+T +VM PTL +S + GI+PL+ NQI Sbjct: 68 TSFTRIVVVLSLLRTALGTATAPPNSVIIALAMFLTAFVMGPTLQKSYDDGIKPLVANQI 127 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 T A+QR + P FM+ N RE+DL LF+D+ S T D + RIL+P+FMIS Sbjct: 128 TVEEALQRASVPLRGFMQKNVREQDLKLFIDL---SGEPPPATPAD-LSLRILMPAFMIS 183 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+R+FEIGFL+ LPFLIID++VA+++M+MGMMMLPP +SLPFK+IFFVL+DGWSL+ Sbjct: 184 ELKRAFEIGFLLFLPFLIIDLVVASVLMSMGMMMLPPVVVSLPFKLIFFVLVDGWSLVAG 243 Query: 240 NLVKSF 245 +LV+S+ Sbjct: 244 SLVQSY 249 >gi|86750888|ref|YP_487384.1| flagellar biosynthesis protein FliP [Rhodopseudomonas palustris HaA2] gi|86573916|gb|ABD08473.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris HaA2] Length = 254 Score = 229 bits (583), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 108/212 (50%), Positives = 159/212 (75%), Gaps = 4/212 (1%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 ++ ++ + T+LSIAP +LIM+T F R ++V S+LRT +G + PPN+VII+LALF Sbjct: 43 GVTERAIQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLRTALGTATAPPNMVIIALALF 102 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 +T +VM PTL +S + GI+PL+ N+++ A+ R + P +FM+ N REKDL LF+D++ Sbjct: 103 LTAFVMGPTLQKSYDDGIKPLIANEMSVEDALVRASGPLRIFMQKNVREKDLKLFLDLSG 162 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 T + + RIL+P+FMISEL+R+FEIGFL+ LPFLIID++VA+++M+MGMMM Sbjct: 163 EPPPATP----EDLSLRILMPAFMISELKRAFEIGFLLFLPFLIIDLVVASVLMSMGMMM 218 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LPP +SLPFK+IFFVL+DGWSL+ +LV+S+ Sbjct: 219 LPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY 250 >gi|288962691|ref|YP_003452985.1| flagellar biosynthetic protein [Azospirillum sp. B510] gi|288914957|dbj|BAI76441.1| flagellar biosynthetic protein [Azospirillum sp. B510] Length = 279 Score = 228 bits (581), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 106/223 (47%), Positives = 161/223 (72%), Gaps = 11/223 (4%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 S+S IV+ + T+LS+AP LLIMVTCF R I+V S+LR+ +G+ PPN+V++SLA+F Sbjct: 55 SLSGRIVQGIVLLTVLSVAPGLLIMVTCFTRIIVVLSLLRSALGLQQSPPNMVLVSLAMF 114 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM---- 149 +TF++M P +D + + G++PL+N Q+T+ ++R+ EPF FM ++ RE+DL+ F Sbjct: 115 LTFHIMGPVIDSAWQDGLRPLLNEQVTQEQGLERMIEPFRGFMASHVRERDLAAFAAFTA 174 Query: 150 -------DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202 + A ++ + ++ R+L+P+F++SELRR+FEIGFL+ LPFL+IDM+V Sbjct: 175 KPKPAGEEAAQPPEKDGRPVTAESVDLRLLMPAFLLSELRRAFEIGFLLFLPFLVIDMVV 234 Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 A I+MAMGMMMLPP I+LPFK+IFFVL DGW L+ +L++S+ Sbjct: 235 AAILMAMGMMMLPPVMIALPFKIIFFVLTDGWFLIAGSLIRSY 277 >gi|39936951|ref|NP_949227.1| flagellar biosynthesis protein FliP [Rhodopseudomonas palustris CGA009] gi|192292779|ref|YP_001993384.1| flagellar biosynthesis protein FliP [Rhodopseudomonas palustris TIE-1] gi|39650808|emb|CAE29331.1| putative flagellar biosynthesis protein fliP [Rhodopseudomonas palustris CGA009] gi|192286528|gb|ACF02909.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris TIE-1] Length = 254 Score = 228 bits (580), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 108/212 (50%), Positives = 157/212 (74%), Gaps = 4/212 (1%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 ++ ++ + T+LSIAP +L+M+T F R ++V S+LRT +G + PPN VII+LALF Sbjct: 43 GVTERAIQLIALLTVLSIAPSILVMMTSFTRIVVVLSLLRTALGTATAPPNAVIIALALF 102 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 +T +VM PTL +S + GI+PL+ N+I A+ R + P +FM+ N REKDL LF+D++ Sbjct: 103 LTAFVMGPTLQKSYDEGIKPLIANEIGVDDAMVRASGPLRIFMQKNVREKDLKLFLDLSG 162 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 T + + RIL+P+F+ISEL+R+FEIGFL+ LPFLIID++VA+I+M+MGMMM Sbjct: 163 EPPPATP----EDLSLRILMPAFLISELKRAFEIGFLLFLPFLIIDLVVASILMSMGMMM 218 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LPP +SLPFK+IFFVL+DGWSL+ +LV+S+ Sbjct: 219 LPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY 250 >gi|75675323|ref|YP_317744.1| flagellar biosynthesis protein FliP [Nitrobacter winogradskyi Nb-255] gi|74420193|gb|ABA04392.1| Flagellar transport protein FliP [Nitrobacter winogradskyi Nb-255] Length = 251 Score = 227 bits (579), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 117/246 (47%), Positives = 170/246 (69%), Gaps = 8/246 (3%) Query: 3 RYCFFALFLVTPELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 R FF L L+T + + D+ + + ++ ++ + T+LSIAP +LIM+ Sbjct: 9 RVSFF-LILITAGSLTDPALAQDISINLGGAGNGGVTERAIQLIALLTVLSIAPSILIMM 67 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R ++V S+LRT +G + PPN VII+LA+F+T +VM PTL +S + GI+PL+ N+ Sbjct: 68 TSFTRIVVVLSLLRTALGTATAPPNSVIIALAMFLTAFVMGPTLQKSYDEGIKPLVANET 127 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 T A+QR + P FM+ N RE+DL LFMD+ S T D + RIL+P+FMIS Sbjct: 128 TVEEALQRASVPLRGFMQKNVREQDLKLFMDL---SGEPPPATPAD-LSLRILMPAFMIS 183 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+R+FEIGFL+ LPFLIID++VA+++M+MGMMMLPP +SLPFK+IFFVL+DGW+L+ Sbjct: 184 ELKRAFEIGFLLFLPFLIIDLVVASVLMSMGMMMLPPVVVSLPFKLIFFVLVDGWALVAG 243 Query: 240 NLVKSF 245 +LV+S+ Sbjct: 244 SLVQSY 249 >gi|91976169|ref|YP_568828.1| flagellar biosynthesis protein FliP [Rhodopseudomonas palustris BisB5] gi|91682625|gb|ABE38927.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris BisB5] Length = 255 Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 107/212 (50%), Positives = 157/212 (74%), Gaps = 4/212 (1%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 ++ ++ + T+LSIAP +L+M+T F R ++V S+LRT +G + PPN VII+LALF Sbjct: 44 GVTERAIQLIALLTVLSIAPSILVMMTSFTRIVVVLSLLRTALGTATAPPNSVIIALALF 103 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 +T +VM PTL +S + GI+PL+ N++ A+ R + P +FM+ N REKDL LF+D++ Sbjct: 104 LTGFVMGPTLQKSYDDGIKPLIANEMAVEDALVRASGPLRIFMQKNVREKDLKLFLDLSG 163 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 T + + RIL+P+FMISEL+R+FEIGFL+ LPFLIID++VA+++M+MGMMM Sbjct: 164 EQPPATP----EELSLRILMPAFMISELKRAFEIGFLLFLPFLIIDLVVASVLMSMGMMM 219 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LPP +SLPFK+IFFVL+DGWSL+ +LV+S+ Sbjct: 220 LPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY 251 >gi|163744333|ref|ZP_02151693.1| flagellar biosynthetic protein FliP [Oceanibulbus indolifex HEL-45] gi|161381151|gb|EDQ05560.1| flagellar biosynthetic protein FliP [Oceanibulbus indolifex HEL-45] Length = 278 Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 113/234 (48%), Positives = 163/234 (69%), Gaps = 8/234 (3%) Query: 21 SSLHDVMNIPA-----DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTG 75 +L DV+ A + ++S IV+ + T+LSIAP LL+++T F RF+IV S+LR+ Sbjct: 40 GTLSDVIGDSAPGSDENANLSGRIVQFIALMTVLSIAPGLLVVMTSFTRFVIVLSMLRSA 99 Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVF 135 +G+ PPN+V+ SLALFMTF+VM P + + E G+QPL+ N I E A++R+A PF F Sbjct: 100 LGLNQTPPNIVLTSLALFMTFFVMQPVFEDAYEAGVQPLLENAIAEEQALERIAAPFKSF 159 Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDI---TKNDHIEYRILIPSFMISELRRSFEIGFLII 192 M NTR +D +LF+ +A + + + +R L+P+FMISELRR+F IGFLI Sbjct: 160 MYVNTRPEDYALFLRIAPADEEAEETPLPASAEEATFRHLVPAFMISELRRAFTIGFLIY 219 Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 LPF+ ID+I+A+++M+ GMMMLPP ISLPFKVIFFVLIDGW +L +L++S++ Sbjct: 220 LPFVAIDLIIASVLMSAGMMMLPPVLISLPFKVIFFVLIDGWYMLAGSLIESYV 273 >gi|316932831|ref|YP_004107813.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris DX-1] gi|315600545|gb|ADU43080.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris DX-1] Length = 255 Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 109/212 (51%), Positives = 157/212 (74%), Gaps = 4/212 (1%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 ++ ++ + T+LSIAP +LIM+T F R ++V S+LRT +G + PPN VII+LALF Sbjct: 44 GVTERAIQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLRTALGTATAPPNAVIIALALF 103 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 +T +VM PTL ++ + GI+PL+ N+I A+ R + P VFM+ N REKDL LF+D++ Sbjct: 104 LTAFVMGPTLQKAYDDGIKPLIANEIGVDDALVRASGPMRVFMQKNVREKDLKLFLDLSG 163 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 T + + RIL+P+F+ISEL+R+FEIGFL+ LPFLIID++VA+I+M+MGMMM Sbjct: 164 EPPPATP----EDLSLRILMPAFLISELKRAFEIGFLLFLPFLIIDLVVASILMSMGMMM 219 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LPP +SLPFK+IFFVL+DGWSL+ +LV+S+ Sbjct: 220 LPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY 251 >gi|46200839|ref|ZP_00056386.2| COG1338: Flagellar biosynthesis pathway, component FliP [Magnetospirillum magnetotacticum MS-1] Length = 241 Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 105/212 (49%), Positives = 155/212 (73%), Gaps = 4/212 (1%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 S ++ I++ + T+LS+AP +L+M+T F RF++V LR +G PPN V++SLA+F Sbjct: 33 SATSRIIQLIALTTVLSVAPSILVMITSFTRFVVVLGFLRQALGTQQSPPNTVMVSLAMF 92 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 +T +VM+PT +++ GIQP+M+ + E +R +PF FM + R +DL LFMDM+ Sbjct: 93 LTAFVMTPTFEKAWTDGIQPVMDGHLDEIEGFERAIKPFHAFMSKHVRAQDLKLFMDMS- 151 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 R ++ K + + R LIP+FMISELRR+FEIGFLI LPFLIIDM++A+++M+MGMMM Sbjct: 152 ---RAKEVEKAEDVPLRALIPAFMISELRRAFEIGFLIFLPFLIIDMVIASVLMSMGMMM 208 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PP ISLPFK+IFFV++DGW L+V +LV+S+ Sbjct: 209 IPPAMISLPFKLIFFVMVDGWYLVVGSLVQSY 240 >gi|158422252|ref|YP_001523544.1| flagellar biosynthetic FliP protein [Azorhizobium caulinodans ORS 571] gi|158329141|dbj|BAF86626.1| flagellar biosynthetic FliP protein [Azorhizobium caulinodans ORS 571] Length = 292 Score = 226 bits (577), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 129/260 (49%), Positives = 171/260 (65%), Gaps = 30/260 (11%) Query: 16 LVFAKSSLHDVMNIPA--------DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67 L +A++ + IP+ ++S I++ + T+LSIAP LLIMVT F RF+I Sbjct: 32 LAYAQNRVQGDTQIPSLDSLLGDNGGAVSGRIIQMVMVLTVLSIAPGLLIMVTSFTRFVI 91 Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127 S LR+G+G+ S P NLV+ISL+LFMTFYVM PT D++ G++PL +ITE A + Sbjct: 92 ALSFLRSGLGLSSTPANLVLISLSLFMTFYVMGPTFDKAWTEGVRPLTERKITEEEAFTK 151 Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAH----------------------SSHRNTDITKND 165 ++EPF FM + R KDL LF D+A S +R+ + Sbjct: 152 ISEPFREFMLSQVRPKDLRLFADIAAATGRPSKNDPETAAQNNSAPATSPNRDQNAQPER 211 Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225 IE RILIP+FMISELRR FEIGFLIILPFLIIDMIVAT+VM+MGMMM+ P +++LPFK+ Sbjct: 212 QIELRILIPAFMISELRRGFEIGFLIILPFLIIDMIVATLVMSMGMMMMSPAALALPFKI 271 Query: 226 IFFVLIDGWSLLVENLVKSF 245 +FFVLIDGW++LV LV+SF Sbjct: 272 LFFVLIDGWNILVSGLVRSF 291 >gi|163849877|ref|YP_001637920.1| flagellar biosynthetic protein FliP [Methylobacterium extorquens PA1] gi|163661482|gb|ABY28849.1| flagellar biosynthetic protein FliP [Methylobacterium extorquens PA1] Length = 253 Score = 226 bits (576), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 103/202 (50%), Positives = 150/202 (74%), Gaps = 4/202 (1%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 + T+L++AP +L+M T F R ++V SILR+ +G + PPN V++SLALF+T +VM+PT Sbjct: 54 ALITVLALAPSVLVMATSFTRIVVVLSILRSALGTQTAPPNTVMVSLALFLTAFVMAPTA 113 Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163 + G++PLM QI+++ A +R + PF FM N REKDL LF+DMA R Sbjct: 114 REAYRTGVEPLMAGQISQSQAFERASAPFKTFMLRNVREKDLKLFLDMA----RQPAPAG 169 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 + I I+ P+FMISELRR+FEIGFL+ +PFLIID++VA+++MAMGMMMLPP +++LPF Sbjct: 170 PEAIGLEIVTPAFMISELRRAFEIGFLLFIPFLIIDLVVASVLMAMGMMMLPPATVALPF 229 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K+IFFVL+DGW+L+ +L++S+ Sbjct: 230 KLIFFVLVDGWTLVAGSLIQSY 251 >gi|328543163|ref|YP_004303272.1| flagellar transport protein FliP [polymorphum gilvum SL003B-26A1] gi|326412909|gb|ADZ69972.1| Flagellar transport protein FliP [Polymorphum gilvum SL003B-26A1] Length = 245 Score = 226 bits (575), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 106/212 (50%), Positives = 157/212 (74%), Gaps = 4/212 (1%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 S++ V+ + T+LS+AP +L+MVT F R ++V S+LR+ +G+ + PPN+V++SLALF Sbjct: 35 SLTERAVQLVALLTVLSLAPSILVMVTSFTRIVVVLSLLRSAIGLQTAPPNMVMVSLALF 94 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 +T ++M+PTL + E G+QPL+ I A +R + PF FM + REKDL+LF +++ Sbjct: 95 LTAFIMAPTLQVAYEEGVQPLVEGTIEFDQAFERASTPFHAFMLSQVREKDLALFQELSG 154 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 T + + ++ LIP+FMISELRR+FEIGFL+ LPFLIID++VA+++M+MGMMM Sbjct: 155 QEAPET----QEDLSFQTLIPAFMISELRRAFEIGFLLYLPFLIIDLVVASVLMSMGMMM 210 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LPP ISLPFK+IFFVL+DGW+L+ +LV+SF Sbjct: 211 LPPVVISLPFKLIFFVLVDGWNLVAGSLVRSF 242 >gi|218528509|ref|YP_002419325.1| flagellar biosynthetic protein FliP [Methylobacterium chloromethanicum CM4] gi|240137103|ref|YP_002961572.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens AM1] gi|218520812|gb|ACK81397.1| flagellar biosynthetic protein FliP [Methylobacterium chloromethanicum CM4] gi|240007069|gb|ACS38295.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens AM1] Length = 253 Score = 226 bits (575), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 103/202 (50%), Positives = 150/202 (74%), Gaps = 4/202 (1%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 + T+L++AP +L+M T F R ++V SILR+ +G + PPN V++SLALF+T +VM+PT Sbjct: 54 ALITVLALAPSVLVMATSFTRIVVVLSILRSALGTQTAPPNTVMVSLALFLTAFVMAPTA 113 Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163 + G++PLM QI+++ A +R + PF FM N REKDL LF+DMA R Sbjct: 114 REAYRTGVEPLMAGQISQSQAFERASAPFKTFMLRNVREKDLKLFLDMA----RQPAPAG 169 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 + I I+ P+FMISELRR+FEIGFL+ +PFLIID++VA+++MAMGMMMLPP +++LPF Sbjct: 170 PEAIGLEIVTPAFMISELRRAFEIGFLLFIPFLIIDLVVASVLMAMGMMMLPPATVALPF 229 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K+IFFVL+DGW+L+ +L++S+ Sbjct: 230 KLIFFVLVDGWTLVAGSLIQSY 251 >gi|254559115|ref|YP_003066210.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens DM4] gi|254266393|emb|CAX22157.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens DM4] Length = 253 Score = 225 bits (574), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 103/202 (50%), Positives = 150/202 (74%), Gaps = 4/202 (1%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 + T+L++AP +L+M T F R ++V SILR+ +G + PPN V++SLALF+T +VM+PT Sbjct: 54 ALITVLALAPSVLVMATSFTRIVVVLSILRSALGTQTAPPNTVMVSLALFLTAFVMAPTA 113 Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163 + G++PLM QI+++ A +R + PF FM N REKDL LF+DMA R Sbjct: 114 REAYRTGVEPLMAGQISQSQAFERASAPFKTFMLRNVREKDLKLFLDMA----RQPAPAG 169 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 + I I+ P+FMISELRR+FEIGFL+ +PFLIID++VA+++MAMGMMMLPP +++LPF Sbjct: 170 PEAIGLEIVTPAFMISELRRAFEIGFLLFIPFLIIDLVVASVLMAMGMMMLPPATVALPF 229 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K+IFFVL+DGW+L+ +L++S+ Sbjct: 230 KLIFFVLVDGWTLVAGSLIQSY 251 >gi|89068716|ref|ZP_01156102.1| flagellar biosynthesis protein [Oceanicola granulosus HTCC2516] gi|89045679|gb|EAR51741.1| flagellar biosynthesis protein [Oceanicola granulosus HTCC2516] Length = 282 Score = 225 bits (574), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 116/221 (52%), Positives = 159/221 (71%), Gaps = 9/221 (4%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 +S I++ + T+LS+AP LLI++T F RF+IVFSILR+ +G+ PPN+V+ S+ALF Sbjct: 58 ELSGRILQLIALITVLSLAPGLLIVMTSFTRFVIVFSILRSALGLNQTPPNVVLTSMALF 117 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 MTF+VM P + + E G+QPLM+N ITE A++R+A+PF FM NTR DL LF ++A Sbjct: 118 MTFFVMQPVFEDAWEDGLQPLMSNAITEEQAVERIADPFKTFMFANTRPVDLDLFREIAA 177 Query: 154 SSHRNTDI--------TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205 + + T D +R L+P+FMISELRR+F IGFLI LPF+ ID+IVA+I Sbjct: 178 RAGGDDAGAIELPPPETAADA-SWRELVPAFMISELRRAFTIGFLIFLPFIAIDLIVASI 236 Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +M+ GMMMLPP ISLPFKVIFFVLIDGW +L +L++S++ Sbjct: 237 LMSAGMMMLPPVLISLPFKVIFFVLIDGWHMLAGSLIESYL 277 >gi|188579766|ref|YP_001923211.1| flagellar biosynthetic protein FliP [Methylobacterium populi BJ001] gi|179343264|gb|ACB78676.1| flagellar biosynthetic protein FliP [Methylobacterium populi BJ001] Length = 253 Score = 225 bits (573), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 102/201 (50%), Positives = 150/201 (74%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T+L++AP +L+M T F R ++V SILR+ +G + PPN V++SLALF+T +VM+PT Sbjct: 55 LITVLALAPSVLVMATSFTRIVVVLSILRSALGTQTAPPNTVMVSLALFLTAFVMAPTAR 114 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + G++PL+ QI+++ A +R + PF FM N REKDL LF+DMA R Sbjct: 115 EAYRAGVEPLVAGQISQSQAFERASAPFKTFMLRNVREKDLKLFLDMA----RQPAPAGP 170 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + I I+ P+FMISELRR+FEIGFL+ +PFLIID++VA+++MAMGMMMLPP +++LPFK Sbjct: 171 EAIGLEIVTPAFMISELRRAFEIGFLLFIPFLIIDLVVASVLMAMGMMMLPPATVALPFK 230 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 +IFFVL+DGW+L+ +L++S+ Sbjct: 231 LIFFVLVDGWTLVAGSLIQSY 251 >gi|220925383|ref|YP_002500685.1| flagellar biosynthetic protein FliP [Methylobacterium nodulans ORS 2060] gi|219949990|gb|ACL60382.1| flagellar biosynthetic protein FliP [Methylobacterium nodulans ORS 2060] Length = 251 Score = 224 bits (570), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 108/231 (46%), Positives = 160/231 (69%), Gaps = 8/231 (3%) Query: 19 AKSSLHDVMNIPADLSISTWI----VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74 A +S ++ DL S + ++ + T+L++AP +L+M T F R ++V SILR+ Sbjct: 23 ASASGALAQSVTVDLGPSGGVTERALQLVALITVLALAPSVLVMATSFTRIVVVLSILRS 82 Query: 75 GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134 +G + PPN VI+SLALF+T +VM+PT + GI+PL+ QI ++ A +R A PF Sbjct: 83 ALGTQTAPPNAVIVSLALFLTAFVMAPTARDAYRAGIEPLVAGQIQQSQAFERAAAPFKA 142 Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194 FM REKDL LF+D+A + T + + IL P+FMISELRR+FEIGFL+ +P Sbjct: 143 FMLRTVREKDLQLFLDLAKAPRPATP----EAVGLEILTPAFMISELRRAFEIGFLLFIP 198 Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 FLIID++VA+I+M++GMMMLPP +++LPFK+IFFVL+DGW+L+ +LV+S+ Sbjct: 199 FLIIDLVVASILMSVGMMMLPPATVALPFKLIFFVLVDGWTLVAGSLVQSY 249 >gi|299131778|ref|ZP_07024973.1| flagellar biosynthetic protein FliP [Afipia sp. 1NLS2] gi|298591915|gb|EFI52115.1| flagellar biosynthetic protein FliP [Afipia sp. 1NLS2] Length = 252 Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 105/212 (49%), Positives = 153/212 (72%), Gaps = 4/212 (1%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 ++ ++ + T+LS+AP +L+M+T F R ++V S+LRT MG + PPN V+I+LALF Sbjct: 42 GVTARAIQLIALLTVLSVAPSILVMMTSFTRIVVVLSLLRTAMGTATAPPNSVMIALALF 101 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 +T +VM P L +S + G++P++ NQ+T + P FM+ N REKDL LFMD++ Sbjct: 102 LTGFVMGPVLQKSYDDGVKPVIANQLTVEQGLPLAIAPLRGFMQKNVREKDLKLFMDLSR 161 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 T D + RILIP+FMISEL+R+FEIGFL+ LPFLIID++V++++M+MGMMM Sbjct: 162 EPPPATP----DEMSLRILIPAFMISELKRAFEIGFLLFLPFLIIDLVVSSVLMSMGMMM 217 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LPP +SLPFK+IFFVL+DGWSL+ +LV+S+ Sbjct: 218 LPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY 249 >gi|83309709|ref|YP_419973.1| flagellar biosynthesis protein FliP [Magnetospirillum magneticum AMB-1] gi|82944550|dbj|BAE49414.1| Flagellar biosynthesis pathway [Magnetospirillum magneticum AMB-1] Length = 250 Score = 223 bits (567), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 104/212 (49%), Positives = 153/212 (72%), Gaps = 4/212 (1%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 S ++ I++ + T+LS+AP +L+MVT F RF++V LR +G PPN V++SLA+F Sbjct: 42 SATSRIIQLIALTTVLSVAPSILVMVTSFTRFVVVLGFLRQALGTQQSPPNTVMVSLAMF 101 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 +T +VM+PT +++ GI P+M+ + E +R +PF FM + R +DL LFMD++ Sbjct: 102 LTAFVMAPTFEKAWTDGIAPVMDGHLDEIEGFERAVKPFHAFMSKHVRGQDLKLFMDLS- 160 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 R ++ K + R LIP+FMISELRR+FEIGFLI LPFLIIDM++A+++M+MGMMM Sbjct: 161 ---RAKEVEKAEDAPLRALIPAFMISELRRAFEIGFLIFLPFLIIDMVIASVLMSMGMMM 217 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PP ISLPFK+IFFV++DGW L+V +LV+S+ Sbjct: 218 IPPAMISLPFKLIFFVMVDGWYLVVGSLVQSY 249 >gi|254504560|ref|ZP_05116711.1| flagellar biosynthetic protein FliP [Labrenzia alexandrii DFL-11] gi|222440631|gb|EEE47310.1| flagellar biosynthetic protein FliP [Labrenzia alexandrii DFL-11] Length = 255 Score = 223 bits (567), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 109/214 (50%), Positives = 160/214 (74%), Gaps = 4/214 (1%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D +++ V+ + T+LS+AP +L+MVT F R ++V S+LR+ +G+ + PPN+V++SLA Sbjct: 43 DANLTERAVQLVILLTVLSLAPSILVMVTSFTRIVVVLSLLRSAIGLQTAPPNMVMVSLA 102 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 LF++ ++M PTL + + G+QPL++ I A +R +EPF FM + REKDL LF ++ Sbjct: 103 LFLSAFIMMPTLQAAYDAGVQPLIDGDIEIDQAYERASEPFRDFMLSQVREKDLMLFQEL 162 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 S R+ T D +E +LIP+FMISELRR+FEIGFL+ LPFLIID+++A+++M+MGM Sbjct: 163 ---SGRDAPETPED-LEMAVLIPAFMISELRRAFEIGFLLYLPFLIIDLVIASVLMSMGM 218 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMLPP ISLPFK+IFFVL+DGW+L+ +LVKSF Sbjct: 219 MMLPPVVISLPFKLIFFVLVDGWNLVAGSLVKSF 252 >gi|170743261|ref|YP_001771916.1| flagellar biosynthetic protein FliP [Methylobacterium sp. 4-46] gi|168197535|gb|ACA19482.1| flagellar biosynthetic protein FliP [Methylobacterium sp. 4-46] Length = 283 Score = 222 bits (566), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 100/202 (49%), Positives = 153/202 (75%), Gaps = 4/202 (1%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 + T+L++AP +L+M T F R ++V SILR+ +G + PPN VI+SLALF+T +VM+PT Sbjct: 84 ALITVLALAPSVLVMATAFTRIVVVLSILRSALGTQTAPPNAVIVSLALFLTAFVMAPTA 143 Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163 + GI+PL+ QI+++ A +R ++PF FM + REKDL LF+D++++ T Sbjct: 144 REAYRTGIEPLVAGQISQSQAFERASQPFKAFMLRSVREKDLRLFLDLSNAPRPATP--- 200 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 + + IL P+FMISELRR+FEIGFL+ +PFLIID++VA+++M++GMMMLPP +++LPF Sbjct: 201 -EAVGLEILTPAFMISELRRAFEIGFLLFIPFLIIDLVVASVLMSVGMMMLPPATVALPF 259 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K+IFFVL+DGW+L+ +LV+S+ Sbjct: 260 KLIFFVLVDGWTLVAGSLVQSY 281 >gi|300024600|ref|YP_003757211.1| flagellar biosynthetic protein FliP [Hyphomicrobium denitrificans ATCC 51888] gi|299526421|gb|ADJ24890.1| flagellar biosynthetic protein FliP [Hyphomicrobium denitrificans ATCC 51888] Length = 247 Score = 222 bits (566), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 114/216 (52%), Positives = 162/216 (75%), Gaps = 2/216 (0%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 D S+S IV+ + T+LS+AP LL+MVT F RF+I S LR+G+G+ + P N++++SL Sbjct: 34 GDASVSGRIVQLLVVMTVLSVAPGLLMMVTSFARFVIALSFLRSGLGLQTTPSNMILVSL 93 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 ALFMT +VM+PT + + G++P++ N+I++ QR EPF FM+ N REKD+++F D Sbjct: 94 ALFMTMFVMAPTFQAAWDNGVKPMVENKISQEEGYQRTTEPFRAFMKANVREKDIAIFQD 153 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 + S+ R + K + R+LIP+FM+SELRR FEIGFL+ LPFL+ID++VATI+ +MG Sbjct: 154 L--SAERFGEANKAGPDDLRVLIPAFMVSELRRGFEIGFLVTLPFLVIDLVVATIMTSMG 211 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 MMM+PPT +SLP K++FFVL+DGWSLLV LVKSFI Sbjct: 212 MMMMPPTVVSLPLKILFFVLVDGWSLLVGALVKSFI 247 >gi|209884533|ref|YP_002288390.1| flagellar biosynthetic protein FliP [Oligotropha carboxidovorans OM5] gi|209872729|gb|ACI92525.1| flagellar biosynthetic protein FliP [Oligotropha carboxidovorans OM5] Length = 253 Score = 220 bits (561), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 102/215 (47%), Positives = 155/215 (72%), Gaps = 4/215 (1%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 + ++ ++ + T+LSIAP +L+M+T F R ++V S+LRT +G + PPN V+I+L Sbjct: 39 GNGGVTERAIQLIALLTVLSIAPSILVMMTSFTRIVVVLSLLRTALGTATAPPNSVMIAL 98 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 ALF+T +VM P L +S + G++P++ N+++ +R P FM+ N REKDL LFMD Sbjct: 99 ALFLTGFVMGPVLQKSYDEGVKPVIANELSVEQGFERAVGPLRGFMQKNVREKDLKLFMD 158 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 ++ T + + RILIP+FMISEL+R+FEIGFL+ LPFLIID++V++++M+MG Sbjct: 159 LSGEPPPATP----EEMSLRILIPAFMISELKRAFEIGFLLFLPFLIIDLVVSSVLMSMG 214 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMMLPP +SLPFK+IFFVL+DGW+L+ +LV+S+ Sbjct: 215 MMMLPPVVVSLPFKLIFFVLVDGWALVAGSLVQSY 249 >gi|118588703|ref|ZP_01546111.1| flagellar biosynthesis protein P [Stappia aggregata IAM 12614] gi|118438689|gb|EAV45322.1| flagellar biosynthesis protein P [Stappia aggregata IAM 12614] Length = 237 Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 103/214 (48%), Positives = 157/214 (73%), Gaps = 3/214 (1%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D +++ V+ + T+LS+AP +L+MVT F R ++V S+LR+ +G+ + PPN+V++SLA Sbjct: 24 DTTLTERAVQMVILLTVLSLAPSILVMVTSFTRIVVVLSLLRSAIGLQTAPPNMVMVSLA 83 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 LF++ ++M PTL S + G+QPL++ I A +R ++PF FM + REKDL+LF ++ Sbjct: 84 LFLSAFIMMPTLQASYDAGVQPLIDGDIELEQAFERASDPFRTFMLSQVREKDLALFEEL 143 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + + + + L+P+FMISELRR+FEIGFL+ LPFLIID+++A+++M+MGM Sbjct: 144 SGAEEAPE---SPEDLSMATLVPAFMISELRRAFEIGFLLYLPFLIIDLVIASVLMSMGM 200 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMLPP ISLPFK+IFFVL+DGW+L+ +LVKSF Sbjct: 201 MMLPPVVISLPFKLIFFVLVDGWNLVAGSLVKSF 234 >gi|254292926|ref|YP_003058949.1| flagellar biosynthetic protein FliP [Hirschia baltica ATCC 49814] gi|254041457|gb|ACT58252.1| flagellar biosynthetic protein FliP [Hirschia baltica ATCC 49814] Length = 255 Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 105/213 (49%), Positives = 153/213 (71%), Gaps = 4/213 (1%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 +++ IV G+ TILS+AP +L+M T F R ++V S+LRT MG+ PPN VIISL+LF Sbjct: 42 GMTSGIVEMLGVITILSLAPSILVMTTSFVRIVVVLSLLRTAMGLQQAPPNAVIISLSLF 101 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 +T +VM+PT + + + G++P M I A+ R A P FM + ++ DL+LFM MA+ Sbjct: 102 LTAFVMAPTFEAAYKEGVEPFMAESIGLEDALPRAAAPIKTFMAKHVQDDDLALFMGMAN 161 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 + + +++L P+FMISEL+R+FEIGF+I LPFL+ID++VA+I+M+MGMMM Sbjct: 162 IET----LESAEAAPFQVLAPAFMISELKRAFEIGFMIFLPFLVIDLVVASILMSMGMMM 217 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 LPP +IS+PFK+IFFVL+DGW LL +LV+SF+ Sbjct: 218 LPPVTISMPFKLIFFVLVDGWRLLAGSLVESFV 250 >gi|296534353|ref|ZP_06896817.1| flagellar biosynthetic protein FliP [Roseomonas cervicalis ATCC 49957] gi|296265319|gb|EFH11480.1| flagellar biosynthetic protein FliP [Roseomonas cervicalis ATCC 49957] Length = 258 Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 105/224 (46%), Positives = 156/224 (69%), Gaps = 4/224 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 SL+ + P + +T +V+ + +LS+AP LL+MVT F R IV S+LR+ +G V Sbjct: 35 SLNLDLGQPGEAGATTRLVQLTALIGLLSLAPSLLVMVTAFARISIVLSLLRSAIGAPGV 94 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PPN V+I LALF+TF+VM P L+ S G+QP+ Q+ E +Q AEPF FM + R Sbjct: 95 PPNPVLIGLALFLTFFVMQPVLEASWTQGLQPMAAGQLGEIEGLQAAAEPFRGFMLAHAR 154 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 + D++LF+D+A+ + + +R+L+P+F++ ELRR+FEIGFLI LPFL+ID++ Sbjct: 155 DSDIALFLDLANLPA----VEEPARTPWRVLVPAFLVGELRRAFEIGFLIFLPFLVIDIV 210 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 VA+++M +GMMMLPP ++SLPFK+IFFVL+DGW L+ +LV+ F Sbjct: 211 VASVLMGLGMMMLPPNTVSLPFKLIFFVLVDGWRLVSGSLVQGF 254 >gi|46204265|ref|ZP_00050254.2| COG1338: Flagellar biosynthesis pathway, component FliP [Magnetospirillum magnetotacticum MS-1] Length = 249 Score = 219 bits (557), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 109/231 (47%), Positives = 158/231 (68%), Gaps = 7/231 (3%) Query: 18 FAKSSLHDVMNIPADLS---ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74 F S+ ++ DLS +S ++ + T+LS+AP L++VT F R ++VFSILR+ Sbjct: 21 FLGSTPASAQSLTIDLSSGGVSERALQLVALVTVLSLAPSALVVVTSFTRLVVVFSILRS 80 Query: 75 GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134 +G S PPN V+++LALF+T +VM+P ++ GI PL+ +I + A +R PF Sbjct: 81 ALGTQSAPPNAVLVALALFLTAFVMAPVGRQAYTAGIAPLLAGEIQQGQAFERTLAPFRA 140 Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194 FM N REKDL LF+ MA + + I ++ P+FMISEL R+FEIGFL+ +P Sbjct: 141 FMLKNVREKDLDLFLKMA----KTPPPASPEEIGLEVVTPAFMISELSRAFEIGFLLFIP 196 Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 F+IID+ V++++MA+GMMM+PPTS+SLPFK+IFFVL+DGWSLLV +LV+SF Sbjct: 197 FMIIDLAVSSVLMALGMMMMPPTSVSLPFKLIFFVLVDGWSLLVGSLVQSF 247 >gi|254470348|ref|ZP_05083752.1| flagellar biosynthetic protein FliP [Pseudovibrio sp. JE062] gi|211960659|gb|EEA95855.1| flagellar biosynthetic protein FliP [Pseudovibrio sp. JE062] Length = 248 Score = 218 bits (555), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 113/239 (47%), Positives = 163/239 (68%), Gaps = 5/239 (2%) Query: 7 FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66 FALFL A+S D D S++ V+ + T+LS+AP +LIMVT F R + Sbjct: 13 FALFLFWFGPAAAQSISIDFGGGEGD-SVTERAVQLVMLLTVLSLAPSILIMVTSFTRIV 71 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 +V S+LR+ +G+ + PPN V++SLALF+T +VM P + + ++G +P++ I A + Sbjct: 72 VVLSLLRSAIGLQTAPPNAVMLSLALFLTAFVMMPAFETAWDLGAKPMIEGTIEPQEAFE 131 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 R +EPF FMR RE DL LF ++A + T + + R+L+P+FMISELRR+FE Sbjct: 132 RASEPFHQFMRQQVRESDLLLFQELAKAPTPETP----EDLSLRVLVPAFMISELRRAFE 187 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGFL+ LPFLIID+++A+++M+MGMMMLPP ISLPFK+IFFVL+DGW L+ +LV+SF Sbjct: 188 IGFLLYLPFLIIDLVIASVLMSMGMMMLPPIVISLPFKLIFFVLVDGWQLIAGSLVRSF 246 >gi|58039965|ref|YP_191929.1| flagellar biosynthesis protein FliP [Gluconobacter oxydans 621H] gi|58002379|gb|AAW61273.1| Flagellar biosynthetic protein FliP [Gluconobacter oxydans 621H] Length = 255 Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 106/237 (44%), Positives = 160/237 (67%), Gaps = 6/237 (2%) Query: 11 LVTPELVFAKSSLHDVMNIPADLSIST--WIVRTFGIFTILSIAPILLIMVTCFPRFIIV 68 L P L A++ D+ A T +V+ + T+LS+AP LL+M+T F R +IV Sbjct: 21 LAFPHLAHAQAVSIDLGQNGASGGAGTTSRLVQLTALITVLSLAPSLLVMITAFTRIVIV 80 Query: 69 FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128 S+LR+ +G +PPN V+I LALF+T +VM PTL +S + GI+PLM ++ E + Sbjct: 81 LSLLRSALGAQGMPPNTVLIGLALFLTLFVMQPTLQKSWDAGIEPLMAGRVGEMEGLTAA 140 Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188 A+PF FM R D++ F+++AH K +R+L+P+FMI ELRR FE+G Sbjct: 141 AQPFHDFMAVTARPADVATFLNIAH----EKPPAKIGDTPWRVLVPAFMIGELRRGFEMG 196 Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 FL+ LPFL+ID++V++++M++GMMMLPP+++SLPFK+IFFV++DGWSL+ +LV+SF Sbjct: 197 FLLYLPFLVIDLVVSSVLMSLGMMMLPPSTVSLPFKLIFFVVVDGWSLVAGSLVRSF 253 >gi|144900473|emb|CAM77337.1| Type III secretion system inner membrane P protein [Magnetospirillum gryphiswaldense MSR-1] Length = 253 Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 99/207 (47%), Positives = 150/207 (72%), Gaps = 4/207 (1%) Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98 I++ + T+LS+AP +L+MVT F R +IV LR +G PPN+V++SLA+F+T ++ Sbjct: 48 IIQLIALTTVLSVAPSILVMVTSFTRIVIVLGFLRQALGTMQSPPNMVLVSLAMFLTAFI 107 Query: 99 MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 M+PTL++S G+QP + + E A + +P FM + R++DL LF+D++ R Sbjct: 108 MAPTLEQSWNDGVQPYVEGSLEEAAAFEATVKPLQTFMLRHVRDQDLQLFLDLS----RT 163 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 D+ K + + LIP+FMISELRR+FEIGFLI LPF++IDM++A+++M+MGMMM+PP Sbjct: 164 PDVAKAEDAPLKALIPAFMISELRRAFEIGFLIFLPFIVIDMVIASVLMSMGMMMIPPAM 223 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 +SLPFK+IFFVL+DGW ++V +LV+SF Sbjct: 224 VSLPFKLIFFVLVDGWYMVVGSLVQSF 250 >gi|170751431|ref|YP_001757691.1| flagellar biosynthetic protein FliP [Methylobacterium radiotolerans JCM 2831] gi|170657953|gb|ACB27008.1| flagellar biosynthetic protein FliP [Methylobacterium radiotolerans JCM 2831] Length = 255 Score = 216 bits (549), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 98/202 (48%), Positives = 147/202 (72%), Gaps = 4/202 (1%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 + T+L++AP +L+M T F R ++V SILR+ +G + PP V++SLALF+T +VM+PT Sbjct: 56 ALITVLAVAPSVLVMATAFTRIVVVLSILRSALGTQTAPPTAVLVSLALFLTAFVMAPTG 115 Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163 + GI+PL+ +IT+ A +R + PF FM N REKDL LF+D+A Sbjct: 116 RAAYSAGIEPLIAGRITQAQAFERASAPFKTFMLRNVREKDLKLFLDLAKVPAPK----G 171 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 + + I+ P+FMISELRR+FEIGFL+ +PFLIID++VA+++MA+GMMM+PP +++LPF Sbjct: 172 PEDVGLEIVTPAFMISELRRAFEIGFLLFIPFLIIDLVVASVLMAVGMMMVPPATVALPF 231 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K+IFFVL+DGW+L+ +LV+S+ Sbjct: 232 KLIFFVLVDGWTLVAGSLVQSY 253 >gi|114570490|ref|YP_757170.1| flagellar biosynthesis protein FliP [Maricaulis maris MCS10] gi|114340952|gb|ABI66232.1| flagellar biosynthetic protein FliP [Maricaulis maris MCS10] Length = 251 Score = 215 bits (547), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 110/243 (45%), Positives = 166/243 (68%), Gaps = 5/243 (2%) Query: 4 YCFFALFLVTPELVFAKSSLHDV-MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCF 62 +CF L L+ ++ V ++ + +++ +++ + T+LS+AP ++IM T F Sbjct: 9 FCFSLFLLGVITLIGFQADAQTVTIDAGQEGALTERVLQLMALLTVLSLAPSIIIMTTSF 68 Query: 63 PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122 R I+V S+LRTG+G+ PPN V++SLA+FMT ++M+P +S + GIQPL+N +I T Sbjct: 69 VRIIVVLSLLRTGLGLQQSPPNAVLVSLAIFMTGFIMAPVFTQSYDEGIQPLLNEEIELT 128 Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182 A P FM ++ RE DL+LF+DM+ + + + + I+ P+FMISELR Sbjct: 129 EAFDLSTAPLKTFMLSHVREDDLALFIDMSQEAVPESP----EATSFWIVAPAFMISELR 184 Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242 R+FEIGFL+ +PFLIID++VA+I+M+MGMMMLPP ISLPFK+IFFVL+DGW L+V +LV Sbjct: 185 RAFEIGFLLFIPFLIIDLVVASILMSMGMMMLPPIVISLPFKLIFFVLVDGWRLVVGSLV 244 Query: 243 KSF 245 +SF Sbjct: 245 QSF 247 >gi|307637369|gb|ADN79819.1| Flagellar biosynthesis protein [Helicobacter pylori 908] gi|325997557|gb|ADZ49765.1| Flagellar biosynthesis protein [Helicobacter pylori 2017] Length = 250 Score = 214 bits (546), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 111/248 (44%), Positives = 167/248 (67%), Gaps = 10/248 (4%) Query: 4 YCFFALFLVTP---ELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLI 57 + F L L+ P L+ A S+L V +N P+D + + T+L +AP L++ Sbjct: 4 FIFLMLALICPLICPLMSADSALPSVNLSLNAPSDPKQLVTTLNVIALLTLLVLAPSLIL 63 Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 ++T F R I+VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+P M+ Sbjct: 64 VMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDK 123 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177 +I+ T A ++ A PF FM NTREKDL+LF + + + T D + +LIP+FM Sbjct: 124 KISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTP----DDVSLSVLIPAFM 179 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 ISEL+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL Sbjct: 180 ISELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLL 239 Query: 238 VENLVKSF 245 ENLV SF Sbjct: 240 TENLVASF 247 >gi|307945658|ref|ZP_07660994.1| flagellar biosynthetic protein FliP [Roseibium sp. TrichSKD4] gi|307771531|gb|EFO30756.1| flagellar biosynthetic protein FliP [Roseibium sp. TrichSKD4] Length = 231 Score = 214 bits (546), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 106/229 (46%), Positives = 167/229 (72%), Gaps = 4/229 (1%) Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 ++A ++ + D +++ V+ + T+LS+AP +LIMVT F R ++V S+LR+ + Sbjct: 4 IWAANAQEITIGFGDDTTLTERAVQLLALLTVLSLAPSILIMVTSFTRIVVVLSLLRSAI 63 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G+ + PPN+V+ISLA+F+T ++M+PTL ++ G+QPL+++ I A +R ++PF FM Sbjct: 64 GLQTAPPNMVMISLAMFLTAFIMAPTLQKAYNDGVQPLIDDDIEFNQAFERASDPFRQFM 123 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 + REKDL+LF +++ +T + +E L+P+FMISEL+R+FEIGFL+ LPFL Sbjct: 124 LSQVREKDLALFQELSGRPAPDTP----EELELSTLVPAFMISELKRAFEIGFLLYLPFL 179 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IID+++A+++M+MGMMMLPP ISLPFK+IFFVL+DGW+L+ +LVKSF Sbjct: 180 IIDLVIASVLMSMGMMMLPPVVISLPFKLIFFVLVDGWNLVAGSLVKSF 228 >gi|308182827|ref|YP_003926954.1| flagellar biosynthesis protein FliP [Helicobacter pylori PeCan4] gi|308065012|gb|ADO06904.1| flagellar biosynthesis protein FliP [Helicobacter pylori PeCan4] Length = 248 Score = 214 bits (545), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 111/246 (45%), Positives = 166/246 (67%), Gaps = 10/246 (4%) Query: 6 FFALFLVTP---ELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 F L L+ P L+ A S+L V +N P+D + + T+L +AP L++++ Sbjct: 4 FIFLILICPLICPLMSADSALPSVNLSLNAPSDPKQLVTTLNVIALLTLLVLAPSLILVM 63 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R I+VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+P M+ +I Sbjct: 64 TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKI 123 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 + T A ++ A PF FM NTREKDL+LF + + + T D + +LIP+FMIS Sbjct: 124 SYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTP----DEVSLSVLIPAFMIS 179 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL E Sbjct: 180 ELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTE 239 Query: 240 NLVKSF 245 NLV SF Sbjct: 240 NLVASF 245 >gi|217033150|ref|ZP_03438609.1| hypothetical protein HPB128_194g3 [Helicobacter pylori B128] gi|216945122|gb|EEC23821.1| hypothetical protein HPB128_194g3 [Helicobacter pylori B128] Length = 231 Score = 214 bits (545), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 106/230 (46%), Positives = 159/230 (69%), Gaps = 7/230 (3%) Query: 19 AKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTG 75 A S+L V +N P+D + + T+L +AP L++++T F R I+VFS LRT Sbjct: 3 ADSALPSVNLSLNAPSDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTA 62 Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVF 135 +G PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ A PF F Sbjct: 63 LGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEF 122 Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195 M NTREKDL+LF + + + T D + +LIP+FMISEL+ +F+IGFL+ LPF Sbjct: 123 MLKNTREKDLALFFRIRNLPNPKTP----DEVSLSVLIPAFMISELKTAFQIGFLLYLPF 178 Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 L+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENLV SF Sbjct: 179 LVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 228 >gi|317014102|gb|ADU81538.1| flagellar biosynthesis protein FliP [Helicobacter pylori Gambia94/24] Length = 248 Score = 214 bits (544), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 111/246 (45%), Positives = 166/246 (67%), Gaps = 10/246 (4%) Query: 6 FFALFLVTP---ELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 F L L+ P L+ A S+L V +N P+D + + T+L +AP L++++ Sbjct: 4 FIFLILICPLICPLMSADSTLPSVNLSLNAPSDPKQLVTTLNVIALLTLLVLAPSLILVM 63 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R I+VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+P M+ +I Sbjct: 64 TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKI 123 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 + T A ++ A PF FM NTREKDL+LF + + + T D + +LIP+FMIS Sbjct: 124 SYTEAFEKSALPFKKFMLKNTREKDLALFFRIRNLPNPKTP----DDVSLSVLIPAFMIS 179 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL E Sbjct: 180 ELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTE 239 Query: 240 NLVKSF 245 NLV SF Sbjct: 240 NLVASF 245 >gi|315586640|gb|ADU41021.1| flagellar biosynthetic protein FliP [Helicobacter pylori 35A] Length = 248 Score = 213 bits (543), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 112/246 (45%), Positives = 165/246 (67%), Gaps = 10/246 (4%) Query: 6 FFALFLVTP---ELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 F L L+ P L+ A S+L V +N P D + + T+L +AP L++++ Sbjct: 4 FIFLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVM 63 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R I+VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+P M+ +I Sbjct: 64 TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKI 123 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 + T A ++ A PF FM NTREKDL+LF + + + T D + +LIP+FMIS Sbjct: 124 SYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTP----DEVSLSVLIPAFMIS 179 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFKV+ F+L+DG++LL E Sbjct: 180 ELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKVLVFILVDGFNLLTE 239 Query: 240 NLVKSF 245 NLV SF Sbjct: 240 NLVASF 245 >gi|298736381|ref|YP_003728907.1| flagellar biosynthesis protein FliP [Helicobacter pylori B8] gi|298355571|emb|CBI66443.1| flagellar biosynthesis protein (FliP) [Helicobacter pylori B8] Length = 260 Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 109/238 (45%), Positives = 164/238 (68%), Gaps = 8/238 (3%) Query: 11 LVTPELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67 L+ P L+ A S+L V +N P+D + + T+L +AP L++++T F R I+ Sbjct: 25 LICP-LMSADSALPSVNLSLNAPSDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIV 83 Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127 VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ Sbjct: 84 VFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEK 143 Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187 A PF FM NTREKDL+LF + + + T D + +LIP+FMISEL+ +F+I Sbjct: 144 SALPFKEFMLKNTREKDLALFFRIRNLPNPKTP----DEVSLSVLIPAFMISELKTAFQI 199 Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENLV SF Sbjct: 200 GFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 257 >gi|308184472|ref|YP_003928605.1| flagellar biosynthesis protein FliP [Helicobacter pylori SJM180] gi|308060392|gb|ADO02288.1| flagellar biosynthesis protein FliP [Helicobacter pylori SJM180] Length = 301 Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 111/246 (45%), Positives = 166/246 (67%), Gaps = 10/246 (4%) Query: 6 FFALFLVTP---ELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 F L L+ P L+ A S+L V +N P+D + + T+L +AP L++++ Sbjct: 57 FIFLILICPLICPLMSADSALPSVNLSLNAPSDPKQLVTTLNVIALLTLLVLAPSLILVM 116 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R I+VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+P M+ +I Sbjct: 117 TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKI 176 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 + T A ++ A PF FM NTREKDL+LF + + + T D + +LIP+FMIS Sbjct: 177 SYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTP----DEVSLSVLIPAFMIS 232 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL E Sbjct: 233 ELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTE 292 Query: 240 NLVKSF 245 NLV SF Sbjct: 293 NLVASF 298 >gi|217033687|ref|ZP_03439114.1| hypothetical protein HP9810_5g29 [Helicobacter pylori 98-10] gi|216943876|gb|EEC23313.1| hypothetical protein HP9810_5g29 [Helicobacter pylori 98-10] Length = 231 Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 106/230 (46%), Positives = 158/230 (68%), Gaps = 7/230 (3%) Query: 19 AKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTG 75 A S+L V +N P D + + T+L +AP L++++T F R I+VFS LRT Sbjct: 3 ADSTLPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTA 62 Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVF 135 +G PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ A PF F Sbjct: 63 LGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEF 122 Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195 M NTREKDL+LF + + + T D + +LIP+FMISEL+ +F+IGFL+ LPF Sbjct: 123 MLKNTREKDLALFFRIRNLPNPKTP----DEVSLSVLIPAFMISELKTAFQIGFLLYLPF 178 Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 L+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENLV SF Sbjct: 179 LVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 228 >gi|312126835|ref|YP_003991709.1| flagellar biosynthetic protein flip [Caldicellulosiruptor hydrothermalis 108] gi|311776854|gb|ADQ06340.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor hydrothermalis 108] Length = 253 Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 105/234 (44%), Positives = 163/234 (69%), Gaps = 4/234 (1%) Query: 12 VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71 V E+ FA +SL+ + P + + ++ TIL++AP +LIM+T F R +IV Sbjct: 23 VKKEIAFATASLNINLGSPQNPKDVSSALQLIIFLTILTLAPSILIMMTSFTRILIVLGF 82 Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131 +R +G +PPN ++I LALF+TF+VM+P D+ QP +N +IT A++R EP Sbjct: 83 VRNALGTQQMPPNQILIGLALFLTFFVMAPVTDKIYTQAYQPYINGRITSQEALKRAEEP 142 Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191 FM NTR+KDL LF+ +++ + NT++ + R+++P+F+ISEL+ +FE+GFLI Sbjct: 143 LKEFMLKNTRKKDLDLFVKLSNV-NPNTNV---KDLPLRVVVPAFIISELKSAFEMGFLI 198 Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PFLIIDM+VA+I+M+MGM+M+PP ISLPFK++ F+L+DGW+L+VE+LV+SF Sbjct: 199 YVPFLIIDMVVASILMSMGMLMIPPVMISLPFKILLFILVDGWNLVVESLVRSF 252 >gi|108563093|ref|YP_627409.1| flagellar biosynthesis protein FliP [Helicobacter pylori HPAG1] gi|107836866|gb|ABF84735.1| flagellar biosynthetic protein [Helicobacter pylori HPAG1] gi|261839493|gb|ACX99258.1| flagellar biosynthesis protein FliP [Helicobacter pylori 52] gi|308062010|gb|ADO03898.1| flagellar biosynthesis protein FliP [Helicobacter pylori Cuz20] gi|317009302|gb|ADU79882.1| flagellar biosynthesis protein FliP [Helicobacter pylori India7] gi|317012496|gb|ADU83104.1| flagellar biosynthesis protein FliP [Helicobacter pylori Lithuania75] gi|317177503|dbj|BAJ55292.1| flagellar biosynthesis protein FliP [Helicobacter pylori F16] gi|317178956|dbj|BAJ56744.1| flagellar biosynthesis protein FliP [Helicobacter pylori F30] gi|317181997|dbj|BAJ59781.1| flagellar biosynthesis protein FliP [Helicobacter pylori F57] Length = 248 Score = 213 bits (541), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 111/246 (45%), Positives = 165/246 (67%), Gaps = 10/246 (4%) Query: 6 FFALFLVTP---ELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 F L L+ P L+ A S+L V +N P D + + T+L +AP L++++ Sbjct: 4 FIFLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVM 63 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R I+VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+P M+ +I Sbjct: 64 TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKI 123 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 + T A ++ A PF FM NTREKDL+LF + + + T D + +LIP+FMIS Sbjct: 124 SYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTP----DEVSLSVLIPAFMIS 179 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL E Sbjct: 180 ELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTE 239 Query: 240 NLVKSF 245 NLV SF Sbjct: 240 NLVASF 245 >gi|308063526|gb|ADO05413.1| flagellar biosynthesis protein FliP [Helicobacter pylori Sat464] Length = 248 Score = 213 bits (541), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 109/238 (45%), Positives = 163/238 (68%), Gaps = 8/238 (3%) Query: 11 LVTPELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67 L+ P L+ A S+L V +N P D + + T+L +AP L++++T F R I+ Sbjct: 13 LICP-LMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIV 71 Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127 VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ Sbjct: 72 VFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEK 131 Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187 A PF FM NTREKDL+LF + + + T D + +LIP+FMISEL+ +F+I Sbjct: 132 SALPFKEFMLKNTREKDLALFFRIRNLPNPKTP----DEVSLSVLIPAFMISELKTAFQI 187 Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENLV SF Sbjct: 188 GFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 245 >gi|188527470|ref|YP_001910157.1| flagellar biosynthesis protein FliP [Helicobacter pylori Shi470] gi|188143710|gb|ACD48127.1| flagellar biosynthesis protein FliP [Helicobacter pylori Shi470] Length = 248 Score = 213 bits (541), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 109/238 (45%), Positives = 163/238 (68%), Gaps = 8/238 (3%) Query: 11 LVTPELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67 L+ P L+ A S+L V +N P D + + T+L +AP L++++T F R I+ Sbjct: 13 LICP-LMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIV 71 Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127 VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ Sbjct: 72 VFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEK 131 Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187 A PF FM NTREKDL+LF + + + T D + +LIP+FMISEL+ +F+I Sbjct: 132 SALPFKEFMLKNTREKDLALFFRIRNLPNPKTP----DEVSLSVLIPAFMISELKTAFQI 187 Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENLV SF Sbjct: 188 GFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 245 >gi|254779331|ref|YP_003057436.1| flagellar biosynthesis protein FliP [Helicobacter pylori B38] gi|254001242|emb|CAX29217.1| Flagellar biosynthetic protein FliP [Helicobacter pylori B38] Length = 248 Score = 212 bits (540), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 109/238 (45%), Positives = 163/238 (68%), Gaps = 8/238 (3%) Query: 11 LVTPELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67 L+ P L+ A S+L V +N P D + + T+L +AP L++++T F R I+ Sbjct: 13 LICP-LMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIV 71 Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127 VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ Sbjct: 72 VFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEK 131 Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187 A PF FM NTREKDL+LF + + + T D + +LIP+FMISEL+ +F+I Sbjct: 132 SALPFKEFMLKNTREKDLALFFRIRNLPNPKTP----DEVSLSVLIPAFMISELKTAFQI 187 Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENLV SF Sbjct: 188 GFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 245 >gi|317010902|gb|ADU84649.1| flagellar biosynthesis protein FliP [Helicobacter pylori SouthAfrica7] Length = 248 Score = 212 bits (540), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 109/242 (45%), Positives = 164/242 (67%), Gaps = 7/242 (2%) Query: 7 FALFLVTPELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63 F +F + L+ A S+L V +N P D + + T+L +AP L++++T F Sbjct: 8 FLIFALIGPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFI 67 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 R I+VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T Sbjct: 68 RLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTE 127 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 A ++ A PF FM NTREKDL+LF + + + T D + +LIP+FMISEL+ Sbjct: 128 AFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTP----DDVSLSVLIPAFMISELKT 183 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENLV Sbjct: 184 AFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVA 243 Query: 244 SF 245 SF Sbjct: 244 SF 245 >gi|210134891|ref|YP_002301330.1| flagellar biosynthesis protein FliP [Helicobacter pylori P12] gi|210132859|gb|ACJ07850.1| flagellar biosynthetic protein [Helicobacter pylori P12] Length = 260 Score = 212 bits (540), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 111/246 (45%), Positives = 165/246 (67%), Gaps = 10/246 (4%) Query: 6 FFALFLVTP---ELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 F L L+ P L+ A S+L V +N P D + + T+L +AP L++++ Sbjct: 16 FIFLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVM 75 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R I+VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+P M+ +I Sbjct: 76 TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKI 135 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 + T A ++ A PF FM NTREKDL+LF + + + T D + +LIP+FMIS Sbjct: 136 SYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTP----DEVSLSVLIPAFMIS 191 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL E Sbjct: 192 ELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTE 251 Query: 240 NLVKSF 245 NLV SF Sbjct: 252 NLVASF 257 >gi|208434601|ref|YP_002266267.1| flagellar biosynthetic protein [Helicobacter pylori G27] gi|208432530|gb|ACI27401.1| flagellar biosynthetic protein [Helicobacter pylori G27] Length = 260 Score = 212 bits (540), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 109/238 (45%), Positives = 163/238 (68%), Gaps = 8/238 (3%) Query: 11 LVTPELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67 L+ P L+ A S+L V +N P D + + T+L +AP L++++T F R I+ Sbjct: 25 LICP-LMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIV 83 Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127 VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ Sbjct: 84 VFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEK 143 Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187 A PF FM NTREKDL+LF + + + T D + +LIP+FMISEL+ +F+I Sbjct: 144 SALPFKEFMLKNTREKDLALFFRIRNLPNPKTP----DEVSLSVLIPAFMISELKTAFQI 199 Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENLV SF Sbjct: 200 GFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 257 >gi|109947417|ref|YP_664645.1| flagellar biosynthesis protein FliP [Helicobacter acinonychis str. Sheeba] gi|109714638|emb|CAJ99646.1| flagellar biosynthesis protein [Helicobacter acinonychis str. Sheeba] Length = 248 Score = 212 bits (540), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 103/224 (45%), Positives = 156/224 (69%), Gaps = 4/224 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 S++ +N P D + + T+L +AP L++++T F R I+VFS LRT +G Sbjct: 26 SVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQT 85 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PP +++SL+L +TF++M P+L ++ ++GI+P M+ +I+ T A ++ A PF FM NTR Sbjct: 86 PPTQILVSLSLILTFFIMEPSLKKAYDIGIKPYMDKKISYTEAFEKSALPFKEFMLKNTR 145 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 EKDL+LF + + T D + +LIP+FMISEL+ +F+IGFL+ LPFL+IDM+ Sbjct: 146 EKDLALFFRIRQLPNPKTP----DDVSLSVLIPAFMISELKTAFQIGFLLYLPFLVIDMV 201 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENLV SF Sbjct: 202 ISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 245 >gi|312621584|ref|YP_004023197.1| flagellar biosynthetic protein flip [Caldicellulosiruptor kronotskyensis 2002] gi|312202051|gb|ADQ45378.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor kronotskyensis 2002] Length = 252 Score = 212 bits (539), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 104/231 (45%), Positives = 163/231 (70%), Gaps = 4/231 (1%) Query: 15 ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74 E+ FA +SL+ + P + + + ++ TIL++AP +LIM+T F R +IV +R Sbjct: 25 EIAFATASLNINLGNPQNPNDVSSALQLIIFLTILTLAPSILIMMTSFTRILIVLGFIRN 84 Query: 75 GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134 +G +PPN ++I LALF+TF+VM+P D+ QP +N +IT A++R EP Sbjct: 85 ALGTQQMPPNQILIGLALFLTFFVMAPVTDKIYTQAYQPYINGRITSQEALKRAEEPLKE 144 Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194 FM NTR+KDL LF+ +++ + NT++ + R+++P+F+ISEL+ +FE+GFLI +P Sbjct: 145 FMLKNTRKKDLDLFVKLSNV-NPNTNV---KDLPLRVVVPAFIISELKSAFEMGFLIYVP 200 Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 FLIIDM+VA+I+M+MGM+M+PP ISLPFK++ F+L+DGW+L+VE+LV+SF Sbjct: 201 FLIIDMVVASILMSMGMLMIPPVMISLPFKILLFILVDGWNLVVESLVRSF 251 >gi|207092164|ref|ZP_03239951.1| flagellar biosynthesis protein FliP [Helicobacter pylori HPKX_438_AG0C1] Length = 266 Score = 212 bits (539), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 111/246 (45%), Positives = 165/246 (67%), Gaps = 10/246 (4%) Query: 6 FFALFLVTP---ELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 F L L+ P L+ A S+L V +N P D + + T+L +AP L++++ Sbjct: 22 FIFLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVM 81 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R I+VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+P M+ +I Sbjct: 82 TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKI 141 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 + T A ++ A PF FM NTREKDL+LF + + + T D + +LIP+FMIS Sbjct: 142 SYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTP----DEVSLSVLIPAFMIS 197 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL E Sbjct: 198 ELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTE 257 Query: 240 NLVKSF 245 NLV SF Sbjct: 258 NLVASF 263 >gi|83858799|ref|ZP_00952321.1| flagellar biosynthesis protein FliP [Oceanicaulis alexandrii HTCC2633] gi|83853622|gb|EAP91474.1| flagellar biosynthesis protein FliP [Oceanicaulis alexandrii HTCC2633] Length = 258 Score = 212 bits (539), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 101/214 (47%), Positives = 154/214 (71%), Gaps = 5/214 (2%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D +++ +++ + T+LS+AP +LIM T F R ++V S+LRT MG+ PPN V+ISL+ Sbjct: 43 DTALTERVLQMIALLTVLSLAPSILIMTTSFIRIVVVLSLLRTAMGLQQSPPNAVLISLS 102 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 LF+T ++M+P ++ + G++PL++ Q++ A A+P FM +TRE+DL LF+++ Sbjct: 103 LFLTAFIMAPVFTQAYQDGVEPLLSGQLSNQEAFSAAAQPVKTFMLAHTREEDLGLFLNI 162 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + T ++ P+FMISELRR+FEIGFL+ +PFLIID++VA+I+M+MGM Sbjct: 163 SGEEPETAQDTP-----VHVVAPAFMISELRRAFEIGFLLFIPFLIIDLVVASILMSMGM 217 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMLPP ISLPFK+IFFVL+DGWSL++ +LV+SF Sbjct: 218 MMLPPVIISLPFKLIFFVLVDGWSLVIGSLVQSF 251 >gi|317180434|dbj|BAJ58220.1| flagellar biosynthesis protein FliP [Helicobacter pylori F32] Length = 248 Score = 211 bits (538), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 111/246 (45%), Positives = 164/246 (66%), Gaps = 10/246 (4%) Query: 6 FFALFLVTP---ELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 F L L+ P L+ A S+L V +N P D + + T+L +AP L++++ Sbjct: 4 FIFLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVM 63 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R I+VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+P M+ I Sbjct: 64 TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKTI 123 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 + T A ++ A PF FM NTREKDL+LF + + + T D + +LIP+FMIS Sbjct: 124 SYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTP----DEVSLSVLIPAFMIS 179 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL E Sbjct: 180 ELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTE 239 Query: 240 NLVKSF 245 NLV SF Sbjct: 240 NLVASF 245 >gi|15611692|ref|NP_223343.1| flagellar biosynthesis protein FliP [Helicobacter pylori J99] gi|4155178|gb|AAD06205.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99] Length = 248 Score = 211 bits (538), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 110/246 (44%), Positives = 165/246 (67%), Gaps = 10/246 (4%) Query: 6 FFALFLVTP---ELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 F L L+ P L+ A S+L V +N P+D + + T+L +AP L++++ Sbjct: 4 FIFLILICPLICPLMSADSALPSVNLSLNAPSDPKQLVTTLNVIALLTLLVLAPSLILVM 63 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R I+VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+P M+ +I Sbjct: 64 TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKI 123 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 + T A ++ PF FM NTREKDL+LF + + + T D + +LIP+FMIS Sbjct: 124 SYTEAFEKSTLPFKEFMLKNTREKDLALFFRIRNLPNPKTP----DDVSLSVLIPAFMIS 179 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL E Sbjct: 180 ELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTE 239 Query: 240 NLVKSF 245 NLV SF Sbjct: 240 NLVASF 245 >gi|297379879|gb|ADI34766.1| flagellar biosynthetic protein FliP [Helicobacter pylori v225d] Length = 248 Score = 211 bits (537), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 110/246 (44%), Positives = 165/246 (67%), Gaps = 10/246 (4%) Query: 6 FFALFLVTP---ELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 F L L+ P L+ A S+L V +N P D + + T+L +AP L++++ Sbjct: 4 FIFLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVM 63 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R I+VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+P ++ +I Sbjct: 64 TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYVDKKI 123 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 + T A ++ A PF FM NTREKDL+LF + + + T D + +LIP+FMIS Sbjct: 124 SYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTP----DEVSLSVLIPAFMIS 179 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL E Sbjct: 180 ELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTE 239 Query: 240 NLVKSF 245 NLV SF Sbjct: 240 NLVASF 245 >gi|312876513|ref|ZP_07736496.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor lactoaceticus 6A] gi|311796724|gb|EFR13070.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor lactoaceticus 6A] Length = 252 Score = 211 bits (537), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 103/231 (44%), Positives = 162/231 (70%), Gaps = 4/231 (1%) Query: 15 ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74 E+ FA +S++ + P + + ++ TIL++AP +LIM+T F R +IV +R Sbjct: 25 EIAFASASININLGSPQNPKDVSSALQLIIFLTILTLAPSILIMMTSFTRILIVLGFVRN 84 Query: 75 GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134 +G +PPN ++I LALF+TF+VM+P D+ QP +N +IT A++R EP Sbjct: 85 ALGTQQMPPNQILIGLALFLTFFVMAPVTDKIYTQAYQPYINGRITSQEALKRAEEPLKE 144 Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194 FM NTR+KDL LF+ +++ + NT++ + R+++P+F+ISEL+ +FE+GFLI +P Sbjct: 145 FMLKNTRKKDLDLFVKLSNV-NPNTNV---KDLPLRVVVPAFIISELKSAFEMGFLIYVP 200 Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 FLIIDM+VA+I+M+MGM+M+PP ISLPFK++ F+L+DGW+L+VE+LV+SF Sbjct: 201 FLIIDMVVASILMSMGMLMIPPVMISLPFKILLFILVDGWNLVVESLVRSF 251 >gi|332673532|gb|AEE70349.1| flagellar biosynthetic protein FliP [Helicobacter pylori 83] Length = 248 Score = 211 bits (536), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 110/246 (44%), Positives = 164/246 (66%), Gaps = 10/246 (4%) Query: 6 FFALFLVTP---ELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 F L L+ P L+ A S+L V +N P D + + T+L +AP L++++ Sbjct: 4 FIFLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVM 63 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R I+VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+P M+ +I Sbjct: 64 TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKI 123 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 + T A ++ PF FM NTREKDL+LF + + + T D + +LIP+FMIS Sbjct: 124 SYTEAFEKSTLPFKEFMLKNTREKDLALFFRIRNLPNPKTP----DEVSLSVLIPAFMIS 179 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL E Sbjct: 180 ELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTE 239 Query: 240 NLVKSF 245 NLV SF Sbjct: 240 NLVASF 245 >gi|167645329|ref|YP_001682992.1| flagellar biosynthesis protein FliP [Caulobacter sp. K31] gi|167347759|gb|ABZ70494.1| flagellar biosynthetic protein FliP [Caulobacter sp. K31] Length = 266 Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 103/232 (44%), Positives = 159/232 (68%), Gaps = 6/232 (2%) Query: 14 PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73 P + A+S+++ +++ +S +V+ G+ T+LS+AP ++IM T F R ++V +LR Sbjct: 34 PAVAVAQSAIN--VDLGTGAGLSERVVQMVGLLTVLSLAPSIVIMTTSFVRIVVVLGLLR 91 Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133 T +G+ PPN VIISLALF+T VM PT ++S + GI+PL++ QI A A P Sbjct: 92 TAIGVQQSPPNPVIISLALFLTAIVMGPTFEKSYDDGIKPLLDKQIEMPEAFDAAAAPVK 151 Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193 VFM + DL+LF+ ++ T + +++ P+FMISEL+R+FEIGFL+ + Sbjct: 152 VFMLRQVDQDDLALFIRLSKIEKPKTAV----DTPLKVVTPAFMISELKRAFEIGFLLFI 207 Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 PFL+ID++VA+++M+MGMMMLPP ++SLPFK+IFFVL+DGW L+ +LV+SF Sbjct: 208 PFLVIDLVVASVLMSMGMMMLPPATVSLPFKLIFFVLVDGWRLVAGSLVESF 259 >gi|209963528|ref|YP_002296443.1| flagellar biosynthesis protein FliP [Rhodospirillum centenum SW] gi|209956994|gb|ACI97630.1| flagellar biosynthesis protein FliP [Rhodospirillum centenum SW] Length = 267 Score = 211 bits (536), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 111/231 (48%), Positives = 150/231 (64%), Gaps = 12/231 (5%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 M D S + +V+ + TILS+AP LL+MVT F R ++V S+LR+ +G+ PPN+V Sbjct: 33 MGGTGDASFAGRMVQVVALVTILSVAPGLLVMVTSFTRIVVVLSLLRSALGLQQTPPNMV 92 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 ++ LAL +T YVM PTLDRS G+QP+++ QITE A +R+ EPF FM+ + R KDL Sbjct: 93 LLGLALLLTAYVMGPTLDRSWREGVQPMVDGQITEEQAFERIVEPFRDFMQAHVRPKDLE 152 Query: 147 LFMDMAHSSHRNTDI------------TKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194 LF + R LI +F+ISELRR+FEIGFL+ LP Sbjct: 153 LFRSFEAGTKSGAAPAAGSAGPAPSTEEAASAPGLRTLIAAFVISELRRAFEIGFLLFLP 212 Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 FL+IDMI+A ++MAMGMMMLPP ISLPFK+IFFV++DGW L+ LV+S+ Sbjct: 213 FLVIDMIIAAVLMAMGMMMLPPVIISLPFKIIFFVMVDGWLLVAGALVRSY 263 >gi|261838080|gb|ACX97846.1| flagellar biosynthetic protein [Helicobacter pylori 51] Length = 252 Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 102/224 (45%), Positives = 156/224 (69%), Gaps = 4/224 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 S++ +N P D + + T+L +AP L++++T F R I+VFS LRT +G Sbjct: 30 SVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQT 89 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ A PF FM NTR Sbjct: 90 PPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLKNTR 149 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 EKDL+LF + + + T + + +LIP+FMISEL+ +F+IGFL+ LPFL+IDM+ Sbjct: 150 EKDLALFFRIRNLPNPKTP----NEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVIDMV 205 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENLV SF Sbjct: 206 ISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 249 >gi|283954390|ref|ZP_06371910.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp. jejuni 414] gi|283794007|gb|EFC32756.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp. jejuni 414] Length = 233 Score = 209 bits (531), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 103/202 (50%), Positives = 147/202 (72%), Gaps = 4/202 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + TIL++AP ++ ++T F R I+VFS LR MG S+PPN ++++LAL +TF++M P Sbjct: 35 VLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVAT 94 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 +S GI+P + QI A + A+PF FM NTREKDL+LF + + + T Sbjct: 95 KSYNEGIKPYLAEQIGYEEAFVKGAKPFKDFMLKNTREKDLALFYRIRNLPNPKTI---- 150 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D + +L+P+FMISEL+ +FEIGFLI LPFL+IDM+V++++MAMGMMMLPPT ISLPFK Sbjct: 151 DDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPTMISLPFK 210 Query: 225 VIFFVLIDGWSLLVENLVKSFI 246 ++ FVL+DGW+LLV+ LV+SF+ Sbjct: 211 LLIFVLVDGWNLLVQRLVESFV 232 >gi|94314220|ref|YP_587429.1| flagellar biosynthesis protein FliP [Cupriavidus metallidurans CH34] gi|93358072|gb|ABF12160.1| flagellar biosynthesis protein FliP [Cupriavidus metallidurans CH34] Length = 264 Score = 209 bits (531), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 106/235 (45%), Positives = 154/235 (65%), Gaps = 7/235 (2%) Query: 14 PELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71 PE A+S L V + P TW ++T + T LS P ++M+T F R IIV + Sbjct: 34 PESALAQS-LPGVTSRPGPGGGQTWSLSIQTLVLLTSLSFLPAAMLMMTGFTRIIIVLGL 92 Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131 LR +G S PPN V++ L+LF+TF+VMSP D+ QPL N+I+ TA QR A P Sbjct: 93 LRNALGTASSPPNQVLVGLSLFLTFFVMSPVFDKVYTDAYQPLSENKISLETAAQRAAVP 152 Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191 FM TREKDL++F MA + ++ + + + +L+P+F+ SEL+ +F+IGF I Sbjct: 153 LRAFMLRQTREKDLAMFAQMA----KTPELQGPEDVPFTVLVPAFVTSELKTAFQIGFTI 208 Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +PFLIID++VA+++MAMGMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF+ Sbjct: 209 FIPFLIIDLVVASVLMAMGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSFM 263 >gi|16125203|ref|NP_419767.1| flagellar biosynthesis protein FliP [Caulobacter crescentus CB15] gi|221233939|ref|YP_002516375.1| flagellar biosynthesis protein FliP [Caulobacter crescentus NA1000] gi|2494562|sp|Q45980|FLIP_CAUCR RecName: Full=Flagellar biosynthetic protein fliP gi|841253|gb|AAA86882.1| FliP [Caulobacter crescentus CB15] gi|13422227|gb|AAK22935.1| flagellar biosynthesis protein FliP [Caulobacter crescentus CB15] gi|220963111|gb|ACL94467.1| flagellar biosyntheis protein FliP [Caulobacter crescentus NA1000] Length = 266 Score = 208 bits (530), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 103/234 (44%), Positives = 159/234 (67%), Gaps = 6/234 (2%) Query: 12 VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71 + P A+S+++ +N+ ++ +V+ G+ T+LS+AP ++IM T F R ++V + Sbjct: 33 IMPAAAMAQSAVN--INLGTGAGLTERVVQLVGLMTVLSLAPSIVIMTTSFVRIVVVLGL 90 Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131 LRT +G+ PPN V+ISLALF+T VM+PT +RS + GI+PL++ Q+ A + + P Sbjct: 91 LRTAIGVQQSPPNPVLISLALFLTAIVMAPTFERSYDAGIKPLLDQQMELPEAFEAASGP 150 Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191 FM + DL+LF+ ++ T R++ P+FMISEL+R+FEIGFL+ Sbjct: 151 VKQFMLSQVDRDDLALFVRLSKIPQPRT----AAETPLRVVTPAFMISELKRAFEIGFLL 206 Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PFL+ID++VA+++M+MGMMMLPP SISLPFK+IFFVL+DGW L+ +LV+SF Sbjct: 207 FIPFLVIDLVVASVLMSMGMMMLPPASISLPFKLIFFVLVDGWRLVAGSLVESF 260 >gi|222530123|ref|YP_002574005.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor bescii DSM 6725] gi|222456970|gb|ACM61232.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor bescii DSM 6725] Length = 252 Score = 208 bits (529), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 108/236 (45%), Positives = 167/236 (70%), Gaps = 14/236 (5%) Query: 15 ELVFAKSSLH----DVMNIPADLSISTWIVRTFGIF-TILSIAPILLIMVTCFPRFIIVF 69 E+ FA +SL+ + N P D+S + ++ IF TIL++AP +LIM+T F R +IV Sbjct: 25 EIAFAAASLNINLGNSQN-PNDVSSALQLI----IFLTILTLAPSILIMMTSFTRILIVL 79 Query: 70 SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129 +R +G +PPN ++I LALF+TF+VM+P D+ QP +N +IT A++R Sbjct: 80 GFIRNALGTQQMPPNQILIGLALFLTFFVMAPVTDKIYIQAYQPYINGRITSQEALKRAE 139 Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189 EP FM NTR+KDL LF+ +++ + NT++ + R+++P+F+ISEL+ +FE+GF Sbjct: 140 EPLKEFMLKNTRKKDLDLFVKLSNV-NPNTNV---KDLPLRVVVPAFIISELKSAFEMGF 195 Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LI +PFLIIDM+VA+I+M+MGM+M+PP ISLPFK++ F+L+DGW+L++E+LV+SF Sbjct: 196 LIYVPFLIIDMVVASILMSMGMLMIPPVMISLPFKILLFILVDGWNLVIESLVRSF 251 >gi|295706270|ref|YP_003599345.1| flagellar biosynthetic protein FliP [Bacillus megaterium DSM 319] gi|294803929|gb|ADF40995.1| flagellar biosynthetic protein FliP [Bacillus megaterium DSM 319] Length = 222 Score = 208 bits (529), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 104/231 (45%), Positives = 162/231 (70%), Gaps = 18/231 (7%) Query: 23 LHDVMNI-----PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMG 77 +++VMN+ P ++S S V+ + T+ S+AP +LIM+TCF R +IV S +RT +G Sbjct: 1 MNEVMNLFNSSSPTNISTS---VQLLLLLTVFSVAPGILIMMTCFTRIVIVLSFVRTSLG 57 Query: 78 MGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMR 137 +PPN +++ L+LF+TF++M+PT + E +QPL+ +IT A ++ AEP FM Sbjct: 58 TQQMPPNQILVGLSLFLTFFIMAPTFSQVNEQALQPLLKEKITLNQAYEKAAEPMKEFMS 117 Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIE---YRILIPSFMISELRRSFEIGFLIILP 194 +TR+KDL+LF++ A DI K ++ L+P++ ISEL+ +F+IGF+I +P Sbjct: 118 AHTRQKDLALFLEYA-------DIDKPSSVQDIPLTALVPAYAISELKTAFQIGFMIFIP 170 Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 FLIIDMI+A+++M+MGMMMLPP ISLPFK++ FVL+DGW+L+V++L+ SF Sbjct: 171 FLIIDMIIASVLMSMGMMMLPPVMISLPFKILLFVLVDGWNLVVKSLLISF 221 >gi|209545574|ref|YP_002277803.1| flagellar biosynthesis protein FliP [Gluconacetobacter diazotrophicus PAl 5] gi|209533251|gb|ACI53188.1| flagellar biosynthetic protein FliP [Gluconacetobacter diazotrophicus PAl 5] Length = 266 Score = 208 bits (529), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 101/232 (43%), Positives = 152/232 (65%), Gaps = 4/232 (1%) Query: 14 PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73 P L A+S D+ D ++ +V+ + TILS+AP LL+MVT F R I+V S+LR Sbjct: 37 PTLAHAQSLSLDLGKGMGDAGTTSRLVQLTALITILSLAPSLLVMVTAFTRIIVVLSLLR 96 Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133 +G PPN V+I LALF+TF+VM P +S + GI P+M+ +++E + AEPF Sbjct: 97 GAIGAQGAPPNTVLIGLALFLTFFVMQPVFQQSWDHGIVPMMDGRVSEMEGLTAAAEPFR 156 Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193 FM N R D++ F+ +A+ +R+++P+FMI EL R FE+GFL+ L Sbjct: 157 TFMLANARPADITTFLHLANVPP----PATPAETPWRVIMPAFMIGELSRGFEMGFLLYL 212 Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 PFL+ID++ ++++M++GMMMLPP +ISLPFK+IFFV++DGW ++ LV+SF Sbjct: 213 PFLVIDIVTSSVLMSLGMMMLPPATISLPFKLIFFVMVDGWQMVAGGLVRSF 264 >gi|57242347|ref|ZP_00370286.1| flagellar biosynthetic protein FliP [Campylobacter upsaliensis RM3195] gi|57017027|gb|EAL53809.1| flagellar biosynthetic protein FliP [Campylobacter upsaliensis RM3195] Length = 244 Score = 207 bits (528), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 102/202 (50%), Positives = 147/202 (72%), Gaps = 4/202 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + TIL++AP ++ ++T F R IIVFS LR MG S+PPN +++++AL +TF++M P Sbjct: 46 VLTILALAPSIIFIMTSFLRLIIVFSFLRQAMGTQSMPPNTILVTMALILTFFIMEPVAT 105 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 +S G++P ++ QI A R A+PF FM NTREKDL+LF + + + T Sbjct: 106 KSYNEGVKPYLSEQIGYEEAFVRGAKPFKDFMLKNTREKDLALFYRIRNLPNPKTI---- 161 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D + +L+P+FMISEL+ +FEIGFLI LPFL+IDM+V++++MAMGMMMLPP ISLPFK Sbjct: 162 DDVPLSVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPVMISLPFK 221 Query: 225 VIFFVLIDGWSLLVENLVKSFI 246 ++ FVL+DGW+LLV+ LV+SF+ Sbjct: 222 LLIFVLVDGWNLLVQRLVESFV 243 >gi|86152107|ref|ZP_01070319.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp. jejuni 260.94] gi|85840892|gb|EAQ58142.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp. jejuni 260.94] Length = 244 Score = 207 bits (528), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 102/202 (50%), Positives = 147/202 (72%), Gaps = 4/202 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + TIL++AP ++ ++T F R I+VFS LR MG S+PPN ++++LAL +TF++M P Sbjct: 46 VLTILALAPSIVFVITSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVAT 105 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 +S GI+P + +I A + A+PF FM NTREKDL+LF + + + T Sbjct: 106 KSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNTREKDLALFYRIRNLPNPKTI---- 161 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D + +L+P+FMISEL+ +FEIGFLI LPFL+IDM+V++++MAMGMMMLPPT ISLPFK Sbjct: 162 DDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPTMISLPFK 221 Query: 225 VIFFVLIDGWSLLVENLVKSFI 246 ++ FVL+DGW+LLV+ LV+SF+ Sbjct: 222 LLIFVLVDGWNLLVQRLVESFV 243 >gi|162147465|ref|YP_001601926.1| flagellar biosynthesis protein FliP [Gluconacetobacter diazotrophicus PAl 5] gi|161786042|emb|CAP55624.1| putative flagellar biosynthetic protein fliP [Gluconacetobacter diazotrophicus PAl 5] Length = 259 Score = 207 bits (528), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 101/232 (43%), Positives = 152/232 (65%), Gaps = 4/232 (1%) Query: 14 PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73 P L A+S D+ D ++ +V+ + TILS+AP LL+MVT F R I+V S+LR Sbjct: 30 PTLAHAQSLSLDLGKGMGDAGTTSRLVQLTALITILSLAPSLLVMVTAFTRIIVVLSLLR 89 Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133 +G PPN V+I LALF+TF+VM P +S + GI P+M+ +++E + AEPF Sbjct: 90 GAIGAQGAPPNTVLIGLALFLTFFVMQPVFQQSWDHGIVPMMDGRVSEMEGLTAAAEPFR 149 Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193 FM N R D++ F+ +A+ +R+++P+FMI EL R FE+GFL+ L Sbjct: 150 TFMLANARPADITTFLHLANVPP----PATPAETPWRVIMPAFMIGELSRGFEMGFLLYL 205 Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 PFL+ID++ ++++M++GMMMLPP +ISLPFK+IFFV++DGW ++ LV+SF Sbjct: 206 PFLVIDIVTSSVLMSLGMMMLPPATISLPFKLIFFVMVDGWQMVAGGLVRSF 257 >gi|121612246|ref|YP_001000505.1| flagellar biosynthesis protein FliP [Campylobacter jejuni subsp. jejuni 81-176] gi|30721657|gb|AAP34259.1| FliP [Campylobacter jejuni subsp. jejuni 81-176] gi|87249412|gb|EAQ72372.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp. jejuni 81-176] Length = 244 Score = 207 bits (528), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 102/202 (50%), Positives = 148/202 (73%), Gaps = 4/202 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + TIL++AP ++ ++T F R I+VFS LR MG S+PPN ++++LAL +TF++M P Sbjct: 46 VLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVAT 105 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 +S GI+P ++ +I A + A+PF FM NTREKDL+LF + + + T Sbjct: 106 KSYNEGIKPYLSEKIGYEEAFIKGAKPFKDFMLKNTREKDLALFYRIRNLPNPKTI---- 161 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D + +L+P+FMISEL+ +FEIGFLI LPFL+IDM+V++++MAMGMMMLPPT ISLPFK Sbjct: 162 DDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPTMISLPFK 221 Query: 225 VIFFVLIDGWSLLVENLVKSFI 246 ++ FVL+DGW+LLV+ LV+SF+ Sbjct: 222 LLIFVLVDGWNLLVQRLVESFV 243 >gi|258404717|ref|YP_003197459.1| flagellar biosynthetic protein FliP [Desulfohalobium retbaense DSM 5692] gi|257796944|gb|ACV67881.1| flagellar biosynthetic protein FliP [Desulfohalobium retbaense DSM 5692] Length = 252 Score = 207 bits (528), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 98/201 (48%), Positives = 145/201 (72%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T+LS+AP +L+M T F R +IV S +R MG+ +PPN VII LALF+TF++MSP L Sbjct: 55 LLTVLSLAPAILLMTTSFIRIVIVLSFIRQAMGVRQMPPNQVIIGLALFLTFFIMSPVLS 114 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + + +QP ++ +I + AI+R P FM N R+KDL LF+D++ S T Sbjct: 115 QMNQDALQPYLDQEIGDAQAIERAVSPMREFMFNQVRQKDLQLFVDISGSDQPET----R 170 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + I +L+P+FM+SE++R+F+IGFLI +PFL+IDM+ A+++M+MGM+MLPP ISLPFK Sbjct: 171 EEIRTMLLVPAFMLSEIKRAFQIGFLIFVPFLVIDMVTASVLMSMGMLMLPPVIISLPFK 230 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW L+V +LV+SF Sbjct: 231 ILLFVLVDGWHLVVGSLVRSF 251 >gi|295690701|ref|YP_003594394.1| flagellar biosynthetic protein FliP [Caulobacter segnis ATCC 21756] gi|295432604|gb|ADG11776.1| flagellar biosynthetic protein FliP [Caulobacter segnis ATCC 21756] Length = 265 Score = 207 bits (527), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 104/234 (44%), Positives = 158/234 (67%), Gaps = 6/234 (2%) Query: 12 VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71 V P A+S+++ +N+ ++ +V+ + T+LS+AP ++IM T F R ++V + Sbjct: 32 VMPAAAMAQSAVN--INLGTGAGLTDRVVQLVALMTVLSLAPSIVIMTTSFVRIVVVLGL 89 Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131 LRT +G+ S PPN VIISLALF+T VM PT +RS + GI+PL++ QI A + P Sbjct: 90 LRTAIGVQSSPPNPVIISLALFLTAIVMGPTFERSYDAGIKPLLDKQIELPEAFDAASGP 149 Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191 FM + DL+LF+ ++ T + +++ P+FMISEL+R+FEIGFL+ Sbjct: 150 VKQFMLSQVDRDDLALFVRLSKIPQPKT----AEDTPIKVVTPAFMISELKRAFEIGFLL 205 Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PFL+ID++VA+++M+MGMMMLPP +ISLPFK+IFFVL+DGW L+ +LV+SF Sbjct: 206 FIPFLVIDLVVASVLMSMGMMMLPPATISLPFKLIFFVLVDGWRLVAGSLVESF 259 >gi|222823982|ref|YP_002575556.1| flagellar biosynthesis protein FliP [Campylobacter lari RM2100] gi|222539204|gb|ACM64305.1| flagellar biosynthesis protein FliP [Campylobacter lari RM2100] Length = 244 Score = 207 bits (527), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 100/203 (49%), Positives = 148/203 (72%), Gaps = 6/203 (2%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + TIL++AP ++ ++T F R ++VFS LRT +G ++PPN ++++LAL +TF++M P Sbjct: 46 VLTILALAPTIVFVMTSFLRLVVVFSFLRTALGTQTMPPNTILVTLALILTFFIMEPVAT 105 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 +S GI+P + QI A + +PF FM NTREKDL+LF + RN + K Sbjct: 106 KSYNEGIKPYIAEQIGYEEAFAKGVKPFKDFMLKNTREKDLALFYRI-----RNLENPKT 160 Query: 165 -DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 D + +L+P+FMISEL+ +FEIGFL+ LPFL+IDM+V++++MAMGMMMLPP IS+PF Sbjct: 161 IDDVPLTVLVPAFMISELKTAFEIGFLLFLPFLVIDMVVSSVLMAMGMMMLPPVMISMPF 220 Query: 224 KVIFFVLIDGWSLLVENLVKSFI 246 K++ FVL+DGW+LL++NLVKSF+ Sbjct: 221 KLLIFVLVDGWNLLIQNLVKSFL 243 >gi|57237661|ref|YP_178909.1| flagellar biosynthesis protein FliP [Campylobacter jejuni RM1221] gi|86150212|ref|ZP_01068439.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp. jejuni CF93-6] gi|86153364|ref|ZP_01071568.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp. jejuni HB93-13] gi|88597515|ref|ZP_01100749.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp. jejuni 84-25] gi|157415087|ref|YP_001482343.1| flagellar biosynthesis protein FliP [Campylobacter jejuni subsp. jejuni 81116] gi|218562448|ref|YP_002344227.1| flagellar biosynthesis protein FliP [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|57166465|gb|AAW35244.1| flagellar biosynthetic protein FliP [Campylobacter jejuni RM1221] gi|85839328|gb|EAQ56590.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp. jejuni CF93-6] gi|85843090|gb|EAQ60301.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp. jejuni HB93-13] gi|88190107|gb|EAQ94082.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp. jejuni 84-25] gi|112360154|emb|CAL34948.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|157386051|gb|ABV52366.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni 81116] gi|284926065|gb|ADC28417.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp. jejuni IA3902] gi|307747729|gb|ADN90999.1| Flagellar biosynthetic protein FliP [Campylobacter jejuni subsp. jejuni M1] gi|315058270|gb|ADT72599.1| Flagellar biosynthesis protein fliP [Campylobacter jejuni subsp. jejuni S3] gi|315930473|gb|EFV09528.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp. jejuni 305] gi|315931173|gb|EFV10146.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp. jejuni 327] Length = 244 Score = 207 bits (526), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 102/202 (50%), Positives = 147/202 (72%), Gaps = 4/202 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + TIL++AP ++ ++T F R I+VFS LR MG S+PPN ++++LAL +TF++M P Sbjct: 46 VLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVAT 105 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 +S GI+P + +I A + A+PF FM NTREKDL+LF + + + T Sbjct: 106 KSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNTREKDLALFYRIRNLPNPKTI---- 161 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D + +L+P+FMISEL+ +FEIGFLI LPFL+IDM+V++++MAMGMMMLPPT ISLPFK Sbjct: 162 DDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPTMISLPFK 221 Query: 225 VIFFVLIDGWSLLVENLVKSFI 246 ++ FVL+DGW+LLV+ LV+SF+ Sbjct: 222 LLIFVLVDGWNLLVQRLVESFV 243 >gi|315928248|gb|EFV07564.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 233 Score = 207 bits (526), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 102/202 (50%), Positives = 147/202 (72%), Gaps = 4/202 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + TIL++AP ++ ++T F R I+VFS LR MG S+PPN ++++LAL +TF++M P Sbjct: 35 VLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVAT 94 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 +S GI+P + +I A + A+PF FM NTREKDL+LF + + + T Sbjct: 95 KSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNTREKDLALFYRIRNLPNPKTI---- 150 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D + +L+P+FMISEL+ +FEIGFLI LPFL+IDM+V++++MAMGMMMLPPT ISLPFK Sbjct: 151 DDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPTMISLPFK 210 Query: 225 VIFFVLIDGWSLLVENLVKSFI 246 ++ FVL+DGW+LLV+ LV+SF+ Sbjct: 211 LLIFVLVDGWNLLVQRLVESFV 232 >gi|297569685|ref|YP_003691029.1| flagellar biosynthetic protein FliP [Desulfurivibrio alkaliphilus AHT2] gi|296925600|gb|ADH86410.1| flagellar biosynthetic protein FliP [Desulfurivibrio alkaliphilus AHT2] Length = 247 Score = 207 bits (526), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 97/201 (48%), Positives = 142/201 (70%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 +FT+L++AP +L+M+TCF R I+VFS LR +G +PPN V++ LA+F+T ++M+P Sbjct: 50 VFTVLAMAPAILLMMTCFTRLIVVFSFLRNAIGTQQMPPNQVLVGLAMFLTLFIMAPVFS 109 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + + I P M +I A+Q AEP FM TREKDL LF+ +A + T Sbjct: 110 QINQTAIGPYMEEEIGAEEALQLAAEPIREFMFKQTREKDLELFLGLARAPRPQT----K 165 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D + ILIP+FMISEL+ +F IGF++ LPFL+IDM+VA+++++MGMMMLPP ++LPFK Sbjct: 166 DDVPTHILIPAFMISELKTAFTIGFVLFLPFLVIDMVVASVLLSMGMMMLPPIMVALPFK 225 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW L+V +LV+SF Sbjct: 226 ILLFVLVDGWYLIVGSLVRSF 246 >gi|148926523|ref|ZP_01810205.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni CG8486] gi|145845217|gb|EDK22311.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni CG8486] Length = 244 Score = 207 bits (526), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 102/202 (50%), Positives = 147/202 (72%), Gaps = 4/202 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + TIL++AP ++ ++T F R I+VFS LR MG S+PPN ++++LAL +TF++M P Sbjct: 46 VLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVAT 105 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 +S GI+P + +I A + A+PF FM NTREKDL+LF + + + T Sbjct: 106 KSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNTREKDLALFYRIRNLPNPKTI---- 161 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D + +L+P+FMISEL+ +FEIGFLI LPFL+IDM+V++++MAMGMMMLPPT ISLPFK Sbjct: 162 DDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPTMISLPFK 221 Query: 225 VIFFVLIDGWSLLVENLVKSFI 246 ++ FVL+DGW+LLV+ LV+SF+ Sbjct: 222 LLIFVLVDGWNLLVQRLVESFV 243 >gi|39995531|ref|NP_951482.1| flagellar biosynthesis protein FliP [Geobacter sulfurreducens PCA] gi|39982294|gb|AAR33755.1| flagellar biosynthetic protein FliP [Geobacter sulfurreducens PCA] gi|298504532|gb|ADI83255.1| flagellar biogenesis protein FliP [Geobacter sulfurreducens KN400] Length = 255 Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 104/216 (48%), Positives = 149/216 (68%), Gaps = 7/216 (3%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P D+S+ +++ F + T+LS+AP LL+M T F R +V S LR +G PPN +II+ Sbjct: 46 PGDVSV---VLQIFFLMTVLSLAPGLLMMTTSFTRIAVVLSFLRHAIGTQQAPPNQIIIA 102 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 L+LF+TF+VM+P + IQP QIT+ A++R P FM + TREKDL+LF+ Sbjct: 103 LSLFLTFFVMAPVWQQVNTQAIQPYRAAQITQDEALKRAVAPMRKFMLSQTREKDLALFL 162 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 +++ T D I LIP+FMISELR +F+IGFLI +PFL++DM+VA+++M+M Sbjct: 163 NLSKLPRPRT----ADDIPTLTLIPAFMISELRTAFQIGFLIFIPFLVVDMVVASVLMSM 218 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMMLPP ISLPFK++ FVL+DGW L++ +L+KSF Sbjct: 219 GMMMLPPVMISLPFKILLFVLVDGWGLVIGSLIKSF 254 >gi|57167820|ref|ZP_00366960.1| flagellar biosynthesis protein Cj0820c [Campylobacter coli RM2228] gi|305432155|ref|ZP_07401321.1| flagellar biosynthetic protein FliP [Campylobacter coli JV20] gi|57020942|gb|EAL57606.1| flagellar biosynthesis protein Cj0820c [Campylobacter coli RM2228] gi|304444820|gb|EFM37467.1| flagellar biosynthetic protein FliP [Campylobacter coli JV20] Length = 247 Score = 206 bits (525), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 102/202 (50%), Positives = 145/202 (71%), Gaps = 4/202 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + TIL++AP ++ ++T F R I+VFS LR MG S+PPN ++++LAL +TF++M P Sbjct: 49 VLTILALAPSIIFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVAT 108 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 +S GI+P + QI A R +PF FM NTREKDL+LF + + + T Sbjct: 109 KSYNEGIKPYLAEQIGYEEAFARGVKPFKDFMLKNTREKDLALFYRIRNLPNPKTI---- 164 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D + +L+P+FMISEL+ +FEIGFLI LPFL+IDM+V++++MAMGMMMLPP ISLPFK Sbjct: 165 DDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPVMISLPFK 224 Query: 225 VIFFVLIDGWSLLVENLVKSFI 246 ++ FVL+DGW+LLV+ LV+SF+ Sbjct: 225 LLIFVLVDGWNLLVQRLVESFV 246 >gi|153951658|ref|YP_001398263.1| flagellar biosynthesis protein FliP [Campylobacter jejuni subsp. doylei 269.97] gi|152939104|gb|ABS43845.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp. doylei 269.97] Length = 244 Score = 206 bits (525), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 102/202 (50%), Positives = 146/202 (72%), Gaps = 4/202 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + TIL++AP ++ ++T F R I+VFS LR MG S+PPN ++++LAL +TF++M P Sbjct: 46 VLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVAT 105 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 +S GI+P + QI A + +PF FM NTREKDL+LF + + + T Sbjct: 106 KSYNEGIKPYLAEQIGYEEAFIKGTKPFKDFMLKNTREKDLALFYRIRNLPNPKTI---- 161 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D + +L+P+FMISEL+ +FEIGFLI LPFL+IDM+V++++MAMGMMMLPPT ISLPFK Sbjct: 162 DDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPTMISLPFK 221 Query: 225 VIFFVLIDGWSLLVENLVKSFI 246 ++ FVL+DGW+LLV+ LV+SF+ Sbjct: 222 LLIFVLVDGWNLLVQRLVESFV 243 >gi|294500924|ref|YP_003564624.1| flagellar biosynthetic protein FliP [Bacillus megaterium QM B1551] gi|294350861|gb|ADE71190.1| flagellar biosynthetic protein FliP [Bacillus megaterium QM B1551] Length = 222 Score = 206 bits (525), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 103/231 (44%), Positives = 162/231 (70%), Gaps = 18/231 (7%) Query: 23 LHDVMNI-----PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMG 77 +++VMN+ P ++S S V+ + T+ S+AP +LIM+TCF R +IV S +RT +G Sbjct: 1 MNEVMNLFNSSSPTNISTS---VQLLLLLTVFSVAPGILIMMTCFTRIVIVLSFVRTSLG 57 Query: 78 MGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMR 137 +PPN +++ L+LF+TF++M+PT + E +QPL+ +IT A ++ AEP FM Sbjct: 58 TQQMPPNQILVGLSLFLTFFIMAPTFSQVNEQALQPLLKEKITLNQAYEKAAEPMKEFMS 117 Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIE---YRILIPSFMISELRRSFEIGFLIILP 194 +TR+KDL+LF++ A DI + ++ L+P++ ISEL+ +F+IGF+I +P Sbjct: 118 AHTRQKDLALFLEYA-------DIDRPSSVQDIPLTALVPAYAISELKTAFQIGFMIFIP 170 Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 FLIIDMI+A+++M+MGMMMLPP ISLPFK++ FVL+DGW+L+V++L+ SF Sbjct: 171 FLIIDMIIASVLMSMGMMMLPPVMISLPFKILLFVLVDGWNLVVKSLLISF 221 >gi|302872555|ref|YP_003841191.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor obsidiansis OB47] gi|302575414|gb|ADL43205.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor obsidiansis OB47] Length = 253 Score = 206 bits (525), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 101/231 (43%), Positives = 159/231 (68%), Gaps = 4/231 (1%) Query: 15 ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74 ++ FA +S ++ P + + ++ TIL++AP +LIM+T F R +IV +R Sbjct: 26 QIAFASASFSINLDNPQNPKDVSSALQLIIFLTILTLAPSILIMMTSFTRILIVLGFVRN 85 Query: 75 GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134 +G +PPN ++I LALF+TF+VM+P D+ QP + QIT A++R +P Sbjct: 86 ALGTQQMPPNQILIGLALFLTFFVMAPVTDKIYTQAYQPYIKGQITSQEALKRAEQPLKE 145 Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194 FM NTR+KDL LF+ + + + NT++ + R+++P+F+ISEL+ +FE+GFLI +P Sbjct: 146 FMLKNTRKKDLDLFVKLGNI-NPNTNV---KDLPIRVVVPAFIISELKSAFEMGFLIYVP 201 Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 FLIIDM+VA+I+M+MGM+M+PP ISLPFK++ F+L+DGW+L+VE+LV+SF Sbjct: 202 FLIIDMVVASILMSMGMLMIPPVMISLPFKILLFILVDGWNLVVESLVRSF 252 >gi|315124338|ref|YP_004066342.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315018060|gb|ADT66153.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 230 Score = 206 bits (525), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 102/202 (50%), Positives = 147/202 (72%), Gaps = 4/202 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + TIL++AP ++ ++T F R I+VFS LR MG S+PPN ++++LAL +TF++M P Sbjct: 32 VLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVAT 91 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 +S GI+P + +I A + A+PF FM NTREKDL+LF + + + T Sbjct: 92 KSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNTREKDLALFYRIRNLPNPKTI---- 147 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D + +L+P+FMISEL+ +FEIGFLI LPFL+IDM+V++++MAMGMMMLPPT ISLPFK Sbjct: 148 DDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPTMISLPFK 207 Query: 225 VIFFVLIDGWSLLVENLVKSFI 246 ++ FVL+DGW+LLV+ LV+SF+ Sbjct: 208 LLIFVLVDGWNLLVQRLVESFV 229 >gi|312792663|ref|YP_004025586.1| flagellar biosynthetic protein flip [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179803|gb|ADQ39973.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor kristjanssonii 177R1B] Length = 253 Score = 206 bits (523), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 104/231 (45%), Positives = 162/231 (70%), Gaps = 4/231 (1%) Query: 15 ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74 E+ FA +SL+ + P + + ++ TIL++AP +LIM+T F R +IV +R Sbjct: 26 EIAFASASLNINLGSPQNPKDVSSALQLLIFLTILTLAPSILIMMTSFTRILIVLGFVRN 85 Query: 75 GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134 +G +PPN ++I LALF+TF+VM+P D+ QP +N +IT A++R EP Sbjct: 86 ALGTQQMPPNQILIGLALFLTFFVMAPVTDKIYTQAYQPYINGRITSQEALKRAEEPLKE 145 Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194 FM NTR+KDL LF+ +++ + NT++ + R+++P+F+ISEL+ +FE+GFLI +P Sbjct: 146 FMLKNTRKKDLDLFVKLSNV-NPNTNV---KDLPLRVVVPAFIISELKSAFEMGFLIYVP 201 Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 FLIIDM+VA+I+M+MGM+M+PP ISLPFK++ F+L+DGW+L+VE+LV+SF Sbjct: 202 FLIIDMVVASILMSMGMLMIPPVMISLPFKILLFILVDGWNLVVESLVRSF 252 >gi|315638458|ref|ZP_07893635.1| flagellar biosynthetic protein FliP [Campylobacter upsaliensis JV21] gi|315481449|gb|EFU72076.1| flagellar biosynthetic protein FliP [Campylobacter upsaliensis JV21] Length = 244 Score = 206 bits (523), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 101/202 (50%), Positives = 146/202 (72%), Gaps = 4/202 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + TIL++AP ++ ++T F R IIVFS LR MG S+PPN +++++AL +TF++M P Sbjct: 46 VLTILALAPSIIFIMTSFLRLIIVFSFLRQAMGTQSMPPNTILVTMALILTFFIMEPVAT 105 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 +S G++P ++ QI A R +PF FM NTREKDL+LF + + + T Sbjct: 106 KSYNEGVKPYLSEQIGYEEAFVRGVKPFKDFMLKNTREKDLALFYRIRNLPNPKTI---- 161 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D + +L+P+FMISEL+ +FEIGFLI LPFL+IDM+V++++MAMGMMMLPP ISLPFK Sbjct: 162 DDVPLSVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPVMISLPFK 221 Query: 225 VIFFVLIDGWSLLVENLVKSFI 246 ++ FVL+DGW+LLV+ LV+SF+ Sbjct: 222 LLIFVLVDGWNLLVQRLVESFV 243 >gi|66735095|gb|AAY53788.1| flagella export apparatus [Campylobacter jejuni] Length = 233 Score = 205 bits (522), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 101/202 (50%), Positives = 147/202 (72%), Gaps = 4/202 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + TIL++AP ++ ++T F R I+VFS LR MG S+PPN ++++LAL +TF++M P Sbjct: 35 VLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVAT 94 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 +S GI+P ++ +I A + A+PF FM NTREKDL+LF + + + T Sbjct: 95 KSYNEGIKPYLSEKIGYEEAFIKGAKPFKDFMLKNTREKDLALFYRIRNLPNPKTI---- 150 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D + +L+P+FMISEL+ +FEIGFLI PFL+IDM+V++++MAMGMMMLPPT ISLPFK Sbjct: 151 DDVPLTVLVPAFMISELKTAFEIGFLIYQPFLVIDMVVSSVLMAMGMMMLPPTMISLPFK 210 Query: 225 VIFFVLIDGWSLLVENLVKSFI 246 ++ FVL+DGW+LLV+ LV+SF+ Sbjct: 211 LLIFVLVDGWNLLVQRLVESFV 232 >gi|197104388|ref|YP_002129765.1| flagellar biosynthesis protein FliP [Phenylobacterium zucineum HLK1] gi|196477808|gb|ACG77336.1| flagellar biosynthesis protein FliP [Phenylobacterium zucineum HLK1] Length = 245 Score = 205 bits (522), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 99/212 (46%), Positives = 148/212 (69%), Gaps = 4/212 (1%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 ++ +V+ G+ T+LS+AP ++IM T F R ++V S+LRT +G+ PPN VIISLALF Sbjct: 31 GLTERVVQLVGLLTVLSLAPSIVIMTTSFVRIVVVLSLLRTALGVQQSPPNAVIISLALF 90 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 +T VM PT +RS + G++PL++ QI A P FM + +DL+LF+ ++ Sbjct: 91 LTAIVMGPTFERSYQEGVKPLLDQQIELPQAFDAAGAPVKTFMLSQVDPEDLALFVRLSR 150 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 T + R++ P+FMISEL+R+FEIGFL+ +PFL+ID++VA+++M+MGMMM Sbjct: 151 IPRPAT----MEDTPLRVVTPAFMISELKRAFEIGFLLFIPFLVIDLVVASVLMSMGMMM 206 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LPP ++SLPFK+IFFVL+DGW L+ +LV+SF Sbjct: 207 LPPVTVSLPFKLIFFVLVDGWRLVAGSLVESF 238 >gi|167005441|ref|ZP_02271199.1| flagellar biosynthesis protein FliP [Campylobacter jejuni subsp. jejuni 81-176] Length = 244 Score = 205 bits (522), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 101/202 (50%), Positives = 147/202 (72%), Gaps = 4/202 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + TIL++AP ++ ++T F R I+VFS LR MG S+PPN ++++LAL +TF++M P Sbjct: 46 VLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVAT 105 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 +S GI+P ++ +I A + A+PF FM NTREKDL+LF + + + T Sbjct: 106 KSYNEGIKPYLSEKIGYEEAFIKGAKPFKDFMLKNTREKDLALFYRIRNLPNPKTI---- 161 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D + +L+P+FMISEL+ +FEIGFLI PFL+IDM+V++++MAMGMMMLPPT ISLPFK Sbjct: 162 DDVPLTVLVPAFMISELKTAFEIGFLIYQPFLVIDMVVSSVLMAMGMMMLPPTMISLPFK 221 Query: 225 VIFFVLIDGWSLLVENLVKSFI 246 ++ FVL+DGW+LLV+ LV+SF+ Sbjct: 222 LLIFVLVDGWNLLVQRLVESFV 243 >gi|78224289|ref|YP_386036.1| flagellar biosynthesis protein FliP [Geobacter metallireducens GS-15] gi|78195544|gb|ABB33311.1| Flagellar transport protein FliP [Geobacter metallireducens GS-15] Length = 250 Score = 205 bits (521), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 107/217 (49%), Positives = 149/217 (68%), Gaps = 9/217 (4%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P D+S +++ F + T+LS+AP L++M T F R +IV S LR +G PPN +I++ Sbjct: 41 PGDVST---VLQIFFLMTVLSLAPGLMMMTTSFTRIVIVLSFLRNAIGTQQSPPNQIIVA 97 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 L+LF+TF+VMSP + IQP QIT+ A +R P FM + TREKDL+LF+ Sbjct: 98 LSLFLTFFVMSPVWQQVNTQAIQPYRAAQITQEEAFRRAQVPVRKFMFSQTREKDLALFI 157 Query: 150 DMAH-SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208 +++ RN D I LIP+FMISELR +F+IGFLI +PFL+IDM+VA+++M+ Sbjct: 158 NLSKLQRPRNAD-----DIPTLTLIPAFMISELRTAFQIGFLIFIPFLVIDMVVASVLMS 212 Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MGMMMLPP ISLPFK++ FVL+DGW L++ +LVKSF Sbjct: 213 MGMMMLPPVMISLPFKILLFVLVDGWGLVIGSLVKSF 249 >gi|163732490|ref|ZP_02139935.1| flagellar biosynthesis protein P [Roseobacter litoralis Och 149] gi|161393850|gb|EDQ18174.1| flagellar biosynthesis protein P [Roseobacter litoralis Och 149] Length = 243 Score = 205 bits (521), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 111/251 (44%), Positives = 155/251 (61%), Gaps = 15/251 (5%) Query: 1 MIRYCFFALFLVT---PELVFAKS---SLHDVMNIPADLSISTWIVRTFGIFTILSIAPI 54 M R A+FL P + FA+ SL D D S+S ++ F + T+LS+AP Sbjct: 1 MTRVVLLAVFLTGVFIPSVSFAQDLSISLGD------DGSLSARTIQLFILITVLSLAPG 54 Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114 L IM+TCFP + V SILR +G+ PPN++I+SLALF+T+++M P + + GIQPL Sbjct: 55 LAIMITCFPFLVTVLSILRQAIGLQQSPPNMLIVSLALFLTYFIMEPVFQAAWQNGIQPL 114 Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174 +N I TA R EPF FM D F MA D T +L+P Sbjct: 115 TDNAIDAETAFVRTLEPFRSFM---AARLDPDTFFAMAELRSETIDATPTAEAPLSVLVP 171 Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234 SF++SE+ R+F+IGFL+ LPFLIID++VA ++M+MGMMM+PP +SLPFK+ FFVL DGW Sbjct: 172 SFLLSEISRAFQIGFLVFLPFLIIDLVVAAVLMSMGMMMVPPVIVSLPFKLAFFVLADGW 231 Query: 235 SLLVENLVKSF 245 +L+ +LV+S+ Sbjct: 232 NLIAGSLVQSY 242 >gi|205356321|ref|ZP_03223086.1| putative lipoprotein [Campylobacter jejuni subsp. jejuni CG8421] gi|205345706|gb|EDZ32344.1| putative lipoprotein [Campylobacter jejuni subsp. jejuni CG8421] Length = 233 Score = 205 bits (521), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 102/202 (50%), Positives = 146/202 (72%), Gaps = 4/202 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + TIL +AP ++ ++T F R I+VFS LR MG S+PPN ++++LAL +TF++M P Sbjct: 35 VLTILVLAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVAT 94 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 +S GI+P + +I A + A+PF FM NTREKDL+LF + + + T Sbjct: 95 KSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNTREKDLALFYRIRNLPNPKTI---- 150 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D + +L+P+FMISEL+ +FEIGFLI LPFL+IDM+V++++MAMGMMMLPPT ISLPFK Sbjct: 151 DDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPTMISLPFK 210 Query: 225 VIFFVLIDGWSLLVENLVKSFI 246 ++ FVL+DGW+LLV+ LV+SF+ Sbjct: 211 LLIFVLVDGWNLLVQRLVESFV 232 >gi|283957192|ref|ZP_06374656.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp. jejuni 1336] gi|283791368|gb|EFC30173.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp. jejuni 1336] Length = 244 Score = 204 bits (520), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 101/202 (50%), Positives = 146/202 (72%), Gaps = 4/202 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + TIL++AP ++ ++T F R I+VFS LR MG S+PPN ++++LAL +TF++M P Sbjct: 46 VLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVAT 105 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 +S GI+P + +I A + +PF FM NTREKDL+LF + + + T Sbjct: 106 KSYNEGIKPYLAEKIGYEEAFIKGVKPFKDFMLKNTREKDLALFYRIRNLPNPKTI---- 161 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D + +L+P+FMISEL+ +FEIGFLI LPFL+IDM+V++++MAMGMMMLPPT ISLPFK Sbjct: 162 DDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPTMISLPFK 221 Query: 225 VIFFVLIDGWSLLVENLVKSFI 246 ++ FVL+DGW+LLV+ LV+SF+ Sbjct: 222 LLIFVLVDGWNLLVQRLVESFV 243 >gi|313895854|ref|ZP_07829408.1| flagellar biosynthetic protein FliP [Selenomonas sp. oral taxon 137 str. F0430] gi|312975279|gb|EFR40740.1| flagellar biosynthetic protein FliP [Selenomonas sp. oral taxon 137 str. F0430] Length = 255 Score = 204 bits (519), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 98/216 (45%), Positives = 154/216 (71%), Gaps = 7/216 (3%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P D++ S ++ + T+LS+AP +LIM T F R ++V LR + +VPPN V+++ Sbjct: 46 PQDVAAS---MQLLAVLTVLSLAPAMLIMTTSFVRIVVVIGFLRNALSTQNVPPNQVVLA 102 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 L+LF+TFY+M+P ++ E GI+P ++ QIT+ A++ V EP FM + TRE DL+LF+ Sbjct: 103 LSLFLTFYIMAPYWGQANENGIRPYLDGQITQEQALENVVEPMRDFMFHQTRESDLALFV 162 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 +++ + N+ D + LIP+F+ISEL+ +F+IGF+I +PF++IDMIVA+ +M+M Sbjct: 163 NLSDAERPNSP----DDVSTFTLIPAFIISELKTAFQIGFMIYIPFIVIDMIVASTLMSM 218 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMMLPP ISLPFK++ FV++DGW LL+++L+ SF Sbjct: 219 GMMMLPPVMISLPFKILLFVMVDGWHLLIQSLIMSF 254 >gi|149203108|ref|ZP_01880079.1| flagellar biosynthetic protein FliP [Roseovarius sp. TM1035] gi|149143654|gb|EDM31690.1| flagellar biosynthetic protein FliP [Roseovarius sp. TM1035] Length = 245 Score = 204 bits (519), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 100/215 (46%), Positives = 146/215 (67%), Gaps = 3/215 (1%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D S+S ++ + T+LS+AP + IMVTCFP + V SILR G+G+ PPN++I+SLA Sbjct: 34 DASLSARTLQLIALITVLSLAPGIAIMVTCFPFVVTVLSILRQGIGLQQSPPNMLIVSLA 93 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 LF+TF+VM P ++ E GI+PL+ +++ AI+R PF VFM L+ + Sbjct: 94 LFLTFFVMEPVFTQAWETGIEPLLQERLSPDLAIERTLAPFRVFMLGRVDPDTLA---TI 150 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 A T ++ ILIPSFM+SE+ R+F+IGFL+ LPFLIID++VA I+M+MGM Sbjct: 151 AALRPETTTLSAGPDAPLSILIPSFMLSEIARAFQIGFLVFLPFLIIDLVVAAILMSMGM 210 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 MM+PP +SLPFK+ FFV+ DGW+L+ E+LV+ ++ Sbjct: 211 MMVPPAIVSLPFKLAFFVIADGWTLIAESLVRGYL 245 >gi|320529418|ref|ZP_08030506.1| flagellar biosynthetic protein FliP [Selenomonas artemidis F0399] gi|320138384|gb|EFW30278.1| flagellar biosynthetic protein FliP [Selenomonas artemidis F0399] Length = 255 Score = 204 bits (518), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 98/216 (45%), Positives = 153/216 (70%), Gaps = 7/216 (3%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P D++ S ++ + T+LS+AP +LIM T F R ++V LR + +VPPN V+++ Sbjct: 46 PQDVAAS---MQLLAVLTVLSLAPAMLIMTTSFVRIVVVIGFLRNALSTQNVPPNQVVLA 102 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 L+LF+TFY+M+P ++ E GI+P ++ QIT+ A++ V EP FM TRE DL+LF+ Sbjct: 103 LSLFLTFYIMAPYWGQANENGIRPYLDGQITQEQALENVVEPMRDFMFRQTRESDLALFV 162 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 +++ + N+ D + LIP+F+ISEL+ +F+IGF+I +PF++IDMIVA+ +M+M Sbjct: 163 NLSDAERPNSP----DDVSTFTLIPAFIISELKTAFQIGFMIYIPFIVIDMIVASTLMSM 218 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMMLPP ISLPFK++ FV++DGW LL+++L+ SF Sbjct: 219 GMMMLPPVMISLPFKILLFVMVDGWHLLIQSLIMSF 254 >gi|52080238|ref|YP_079029.1| flagellar biosynthesis protein FliP [Bacillus licheniformis ATCC 14580] gi|52785615|ref|YP_091444.1| flagellar biosynthesis protein FliP [Bacillus licheniformis ATCC 14580] gi|319645983|ref|ZP_08000213.1| FliP protein [Bacillus sp. BT1B_CT2] gi|52003449|gb|AAU23391.1| flagellar protein [Bacillus licheniformis ATCC 14580] gi|52348117|gb|AAU40751.1| FliP [Bacillus licheniformis ATCC 14580] gi|317391733|gb|EFV72530.1| FliP protein [Bacillus sp. BT1B_CT2] Length = 221 Score = 203 bits (517), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 105/222 (47%), Positives = 151/222 (68%), Gaps = 11/222 (4%) Query: 24 HDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPP 83 D N+ A VR + T+ SIAP +LI++TCF R +IV S +RT + S+PP Sbjct: 11 SDAANVSAS-------VRLLLLLTVFSIAPGILILMTCFTRVVIVLSFVRTSLATQSMPP 63 Query: 84 NLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREK 143 N V+I LALF+TF++M PT + + PLMNN+IT A + P FM +TR+K Sbjct: 64 NQVLIGLALFLTFFIMGPTFSEINKEALTPLMNNKITLDEAYTKAEAPIKTFMSKHTRQK 123 Query: 144 DLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVA 203 DL+LFM+ A T + ND I ++P+F+ISEL+ +F++GF+I +PFLIIDM+VA Sbjct: 124 DLALFMNYAK---METPESIND-IPLSTMVPAFVISELKTAFQMGFMIFIPFLIIDMVVA 179 Query: 204 TIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +++M+MGMMMLPP ISLPFK++ FVL+DGW L+V++L++SF Sbjct: 180 SVLMSMGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLLQSF 221 >gi|229544408|ref|ZP_04433466.1| flagellar biosynthetic protein FliP [Bacillus coagulans 36D1] gi|229324893|gb|EEN90570.1| flagellar biosynthetic protein FliP [Bacillus coagulans 36D1] Length = 221 Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 95/206 (46%), Positives = 145/206 (70%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+ + T+LS+AP +LI++T F R +IV S +RT +G + PPN VI+ LALF+TF++M Sbjct: 20 VKILLLMTVLSLAPSILILLTSFTRIVIVLSFVRTSLGTQTAPPNQVIVGLALFLTFFIM 79 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +PT + + + PL ++++T A + +PF FM TR+KDL LF+D AH + Sbjct: 80 APTFQQVNKQALTPLFHDKLTLEEAYDKAQKPFKEFMAKETRQKDLQLFLDYAHKKQPKS 139 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 I L+P+F ISEL+ +F++GF+I +PFL+IDM+VA+++M+MGMMMLPP I Sbjct: 140 ----VQDIPMTTLVPAFTISELKTAFQMGFMIFIPFLVIDMVVASVLMSMGMMMLPPVMI 195 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW L+V++L++SF Sbjct: 196 SLPFKILLFVLVDGWYLVVKSLLESF 221 >gi|312135838|ref|YP_004003176.1| flagellar biosynthetic protein flip [Caldicellulosiruptor owensensis OL] gi|311775889|gb|ADQ05376.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor owensensis OL] Length = 253 Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 105/245 (42%), Positives = 162/245 (66%), Gaps = 10/245 (4%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 +I CF EL FA ++++ + P + + ++ TIL++ P +LIM+T Sbjct: 18 LITVCF------KKELAFATANININLGNPQNPDDISSALQLIIFLTILTLVPSILIMMT 71 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R +IV +R +G +PPN ++I LALF+TF+VM+P D+ QP +N +IT Sbjct: 72 SFTRILIVLGFVRNALGTQQMPPNQILIGLALFLTFFVMAPVTDKIYTQAYQPYINGEIT 131 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A++R P FM NTR+KDL LF+ + + + NT+I + R+++P+F+ISE Sbjct: 132 SQEALKRAEVPLKEFMLKNTRKKDLDLFVKLGNV-NPNTNIR---DLPLRVVVPAFIISE 187 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +FE+GFLI +PFLIIDM VA+I+M+MGM+M+PP ISLPFK++ F+L+DGW+L+VE+ Sbjct: 188 LKSAFEMGFLIYVPFLIIDMTVASILMSMGMLMIPPVMISLPFKILLFILVDGWNLVVES 247 Query: 241 LVKSF 245 LV+SF Sbjct: 248 LVRSF 252 >gi|302037618|ref|YP_003797940.1| flagellar biosynthetic protein FliP [Candidatus Nitrospira defluvii] gi|300605682|emb|CBK42015.1| Flagellar biosynthetic protein FliP, export component [Candidatus Nitrospira defluvii] Length = 266 Score = 203 bits (516), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 100/207 (48%), Positives = 144/207 (69%), Gaps = 4/207 (1%) Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98 +++ +FT+LS+AP L IMVT F R +IV S LR MG VPPN V+ISLALF+T +V Sbjct: 63 VLQILALFTVLSLAPALFIMVTSFTRMVIVLSFLRQAMGTQQVPPNQVLISLALFLTMFV 122 Query: 99 MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 M+P + +QPL+ QI A R +P FM R+KDL LFM+++H+ Sbjct: 123 MAPVGQAVYKDALQPLLAEQIGYEDAWNRGIQPIRAFMLKQMRDKDLELFMELSHAPKA- 181 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 T+ + + ++IP+F++SELR +F+IGFL+ +PFLI+DM+VA+++M+MGMM+LPP Sbjct: 182 ---TQVEQVPIHVIIPAFVLSELRIAFQIGFLLYIPFLIVDMVVASVLMSMGMMLLPPVM 238 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLPFK+I FVL DGW L+V ++V+SF Sbjct: 239 ISLPFKLILFVLADGWYLVVGSMVRSF 265 >gi|182418437|ref|ZP_02949731.1| flagellar biosynthetic protein FliP [Clostridium butyricum 5521] gi|237666336|ref|ZP_04526321.1| flagellar biosynthetic protein FliP [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377819|gb|EDT75363.1| flagellar biosynthetic protein FliP [Clostridium butyricum 5521] gi|237657535|gb|EEP55090.1| flagellar biosynthetic protein FliP [Clostridium butyricum E4 str. BoNT E BL5262] Length = 259 Score = 203 bits (516), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 100/225 (44%), Positives = 153/225 (68%), Gaps = 5/225 (2%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 S D + P D + +R FT+L++ P ++IMVT F R ++VFS L+T +G+ Sbjct: 40 SFGDGSDSPKDYVTN---IRILIFFTVLALLPSIVIMVTSFTRIVVVFSFLKTAIGVTQS 96 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PN ++ LA+F+TF++M P + GIQP + N+IT+ AI +++P FM TR Sbjct: 97 VPNQILTGLAIFLTFFIMQPVYSQMNTNGIQPYLENKITQEQAIDEISKPLKEFMAKETR 156 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 + DL LF+++ + ++ I + I + L+P+F ISELR +FEIGFLI LPFL+IDM+ Sbjct: 157 QDDLELFIEINNVDKQS--IAEAKDIPFTSLVPAFAISELRTAFEIGFLIFLPFLVIDMV 214 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 VA+++M+MGM MLPPT+++LPFK+I FV+++GW LLVE L+KSF+ Sbjct: 215 VASVLMSMGMFMLPPTTVALPFKLILFVMVNGWHLLVEQLIKSFM 259 >gi|110677670|ref|YP_680677.1| flagellar biosynthesis protein FliP [Roseobacter denitrificans OCh 114] gi|109453786|gb|ABG29991.1| flagellar biosynthetic protein FliP [Roseobacter denitrificans OCh 114] Length = 245 Score = 203 bits (516), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 109/251 (43%), Positives = 155/251 (61%), Gaps = 15/251 (5%) Query: 1 MIRYCFFALFLV---TPELVFAKS---SLHDVMNIPADLSISTWIVRTFGIFTILSIAPI 54 M R A+ L+ TP + A+ SL D D S+S ++ F + T+LS+AP Sbjct: 3 MTRITLLAVVLIGLFTPSVSLAQDLSISLGD------DGSLSARTIQLFILITVLSLAPG 56 Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114 L IM+TCFP + V SILR +G+ PPN++I+SLALF+T+++M P + + GIQPL Sbjct: 57 LAIMITCFPFLVTVLSILRQAIGLQQSPPNMLIVSLALFLTYFIMEPVFQAAWQNGIQPL 116 Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174 +N I TA R EPF +FM D F MA D +L+P Sbjct: 117 TDNAIDAETAFVRTLEPFRIFMAGRL---DPDTFFAMAELRSETIDAAPTAEAPLSVLVP 173 Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234 SF++SE+ R+F+IGFL+ LPFLIID++VA ++M+MGMMM+PP +SLPFK+ FFVL DGW Sbjct: 174 SFLLSEISRAFQIGFLVFLPFLIIDLVVAAVLMSMGMMMVPPVIVSLPFKLAFFVLADGW 233 Query: 235 SLLVENLVKSF 245 +L+ +LV+S+ Sbjct: 234 NLIAGSLVQSY 244 >gi|73539701|ref|YP_300068.1| flagellar biosynthesis protein FliP [Ralstonia eutropha JMP134] gi|72123038|gb|AAZ65224.1| Flagellar transport protein FliP [Ralstonia eutropha JMP134] Length = 265 Score = 202 bits (515), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 101/228 (44%), Positives = 150/228 (65%), Gaps = 6/228 (2%) Query: 21 SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 +L V + P W ++T + T LS P ++M+T F R +IV +LR +G Sbjct: 41 QALPGVTSKPGPGGGQIWSLSIQTLVLLTSLSFLPAAVLMMTGFTRIVIVLGLLRNALGT 100 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 S PPN V++ L+LF+TF+VMSP LDR +PL N+I+ TA+ + AEP FM Sbjct: 101 ASSPPNQVLVGLSLFLTFFVMSPVLDRVYNDAYKPLSENRISLETAMAKAAEPLKGFMLK 160 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 TREKDL++F MA + ++ + + IL+P+F+ SEL+ +F+IGF I +PFLII Sbjct: 161 QTREKDLAMFAQMAKAP----EMQGPEEVPMSILVPAFVTSELKTAFQIGFTIFIPFLII 216 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 D++VA+++MAMGMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF+ Sbjct: 217 DLVVASVLMAMGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSFM 264 >gi|295696128|ref|YP_003589366.1| flagellar biosynthetic protein FliP [Bacillus tusciae DSM 2912] gi|295411730|gb|ADG06222.1| flagellar biosynthetic protein FliP [Bacillus tusciae DSM 2912] Length = 264 Score = 202 bits (514), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 95/203 (46%), Positives = 145/203 (71%), Gaps = 6/203 (2%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T+LS+AP +L+M+T F R I+V S +R+ + + PPN V+I LAL +TF+VM+PTL Sbjct: 67 LITVLSLAPGILVMITSFTRMIVVLSFVRSALAVQQTPPNQVLIGLALALTFFVMAPTLS 126 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI-TK 163 + + +QP + ++T+T AI R PF FM TREKDL LF+D +RN + + Sbjct: 127 QVNQQAVQPYLRGELTQTQAIARAEVPFKHFMAKQTREKDLQLFLD-----YRNVALPDR 181 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 + I +L+P++ ISEL+ +FEIGF+I +PFLIIDM++++++MAMGMMMLPP +SLPF Sbjct: 182 VEDIPMSLLVPAYTISELKTAFEIGFMIFIPFLIIDMVISSVLMAMGMMMLPPVIVSLPF 241 Query: 224 KVIFFVLIDGWSLLVENLVKSFI 246 K++ FVL DGW L+V++L+ ++ Sbjct: 242 KILLFVLADGWYLIVKSLLAGYV 264 >gi|238924154|ref|YP_002937670.1| flagellar biosynthetic protein FliP [Eubacterium rectale ATCC 33656] gi|238875829|gb|ACR75536.1| flagellar biosynthetic protein FliP [Eubacterium rectale ATCC 33656] gi|291524887|emb|CBK90474.1| flagellar biosynthetic protein FliP [Eubacterium rectale DSM 17629] gi|291529028|emb|CBK94614.1| flagellar biosynthetic protein FliP [Eubacterium rectale M104/1] Length = 299 Score = 202 bits (514), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 96/206 (46%), Positives = 145/206 (70%), Gaps = 5/206 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 VR F + T+LS+AP +LIM+T F R IIV +RT +G + PPN V++ LALF+T ++M Sbjct: 98 VRMFLVLTVLSLAPSILIMLTSFTRIIIVLHFVRTAIGTQTAPPNQVLVGLALFLTLFIM 157 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 PT + E I+PL +IT+ AI+ PF FM T+ KD+ LF+D++ + + Sbjct: 158 WPTFSQVNEKAIKPLDEGKITQQEAIKEAEGPFREFMYGQTQTKDIKLFVDISGDEYDDY 217 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 D + + L+P+F++SELR +F +GFLI +PF++IDM+V++++M+MGMMMLPPT+I Sbjct: 218 D-----DVPFTTLVPAFILSELRTAFILGFLIYIPFIVIDMVVSSVLMSMGMMMLPPTTI 272 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 S+PFKV+ F+L DGW L++ NLVK+F Sbjct: 273 SMPFKVLLFILADGWDLVIGNLVKTF 298 >gi|224438396|ref|ZP_03659323.1| flagellar biosynthesis protein FliP [Helicobacter cinaedi CCUG 18818] Length = 274 Score = 201 bits (512), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 101/201 (50%), Positives = 142/201 (70%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 I T+L IAP L++++T F R +IVF+ LRT +G PP V++SLAL +TF++M P Sbjct: 77 IITLLVIAPSLVLVMTSFTRIVIVFAFLRTALGTQQSPPTQVLVSLALVLTFFIMEPVAT 136 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 +S E+GI+P QI+ A +R PF FM NTREKDL+LF + + + T Sbjct: 137 KSYEVGIKPYTEKQISYDEAFERAIVPFKDFMIKNTREKDLALFFRIRNLENPQT----V 192 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D + +LIP+FMISEL+ +F IGFL+ LPFL+IDM++++++MAMGMMMLPP ISLPFK Sbjct: 193 DDVPLTVLIPAFMISELKTAFWIGFLLYLPFLVIDMVISSVLMAMGMMMLPPVMISLPFK 252 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW+LL+ NLV+ F Sbjct: 253 ILVFVLVDGWNLLIGNLVQGF 273 >gi|297538204|ref|YP_003673973.1| flagellar biosynthetic protein FliP [Methylotenera sp. 301] gi|297257551|gb|ADI29396.1| flagellar biosynthetic protein FliP [Methylotenera sp. 301] Length = 258 Score = 201 bits (512), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 107/241 (44%), Positives = 154/241 (63%), Gaps = 6/241 (2%) Query: 7 FALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPR 64 A L+ P A++ + V +PA + + +T + T L+ P L+M+T F R Sbjct: 21 LASMLMLPGTALAENGMPLVNALPAAGGGQNYTLSLQTLILLTSLTFLPAALLMMTGFTR 80 Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124 IIV S+LR +G S PPN V++ LALF+TF+VMSP +D+ QPL N+IT A Sbjct: 81 IIIVLSLLRQALGTQSAPPNQVMVGLALFLTFFVMSPVIDKIYVDAYQPLSENKITMQEA 140 Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184 + + A P FM TRE DL+LF++MA T D + +L+P+FM SEL+ + Sbjct: 141 MDKGAAPLKAFMMKQTREGDLALFVNMAKIEKIETP----DQVPLLVLVPAFMTSELKTA 196 Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 F+IGF I +PFLIIDM+VA+++MAMGMMM+ P+ +SLPFK++ FVL+DGW LL+ +LV+S Sbjct: 197 FQIGFAIFIPFLIIDMVVASVLMAMGMMMVSPSIVSLPFKLMLFVLVDGWQLLLGSLVQS 256 Query: 245 F 245 F Sbjct: 257 F 257 >gi|95929864|ref|ZP_01312605.1| flagellar biosynthetic protein FliP [Desulfuromonas acetoxidans DSM 684] gi|95134160|gb|EAT15818.1| flagellar biosynthetic protein FliP [Desulfuromonas acetoxidans DSM 684] Length = 246 Score = 201 bits (512), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 96/201 (47%), Positives = 141/201 (70%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + TILS+AP +L+M T F R ++V S +R MG +PPN VI+ L+LF+TF++M+P Sbjct: 49 VLTILSVAPAILLMTTAFVRVVVVLSFIRQAMGTQQMPPNQVIVGLSLFLTFFIMAPVYS 108 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 E +QP ++ +I + A+ P FM + TREKDL+L +D+A + +T Sbjct: 109 VVNERAVQPYLSGEIDQAQALTEAVNPVRDFMYSQTREKDLALLVDIAGNDRPDT----I 164 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D + LIP+FM+SEL R+F+IGF++ +PFL+IDM+VA+++M+MGMMMLPP ISLPFK Sbjct: 165 DDVPTTTLIPAFMLSELNRAFQIGFMVYVPFLVIDMVVASVLMSMGMMMLPPPIISLPFK 224 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW L+V +LVKSF Sbjct: 225 LLLFVLVDGWGLVVGSLVKSF 245 >gi|146296296|ref|YP_001180067.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409872|gb|ABP66876.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 251 Score = 201 bits (511), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 104/221 (47%), Positives = 155/221 (70%), Gaps = 11/221 (4%) Query: 27 MNIPADLSISTWIVRTFGIF-TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85 MN P D+S + ++ IF TIL++AP +LIM+T F R +IV +R +G +PPN Sbjct: 39 MNNPRDVSSAIQLI----IFLTILTLAPSILIMMTSFTRILIVLGFVRNALGTQQMPPNQ 94 Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145 ++I LALF+TF++M+P +R P + QIT A++R P FM NTR+KDL Sbjct: 95 ILIGLALFLTFFIMAPVGERIYTQSYLPYIKGQITSQEALKRAEAPIKEFMLKNTRKKDL 154 Query: 146 SLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204 LF+ ++ NT+ T N ++ R++IP+F+ISEL+ +FE+GF+I +PFLIIDM+VA+ Sbjct: 155 DLFIKLS-----NTNPTTNVRNLPLRVVIPAFIISELKSAFEMGFIIYVPFLIIDMVVAS 209 Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 I+M+MGM+M+PP ISLPFK++ F+L+DGW L+VE+L+KSF Sbjct: 210 ILMSMGMLMIPPVMISLPFKILLFILVDGWGLVVESLIKSF 250 >gi|313144838|ref|ZP_07807031.1| flagellar biosynthesis protein FliP [Helicobacter cinaedi CCUG 18818] gi|313129869|gb|EFR47486.1| flagellar biosynthesis protein FliP [Helicobacter cinaedi CCUG 18818] Length = 266 Score = 201 bits (511), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 101/201 (50%), Positives = 142/201 (70%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 I T+L IAP L++++T F R +IVF+ LRT +G PP V++SLAL +TF++M P Sbjct: 69 IITLLVIAPSLVLVMTSFTRIVIVFAFLRTALGTQQSPPTQVLVSLALVLTFFIMEPVAT 128 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 +S E+GI+P QI+ A +R PF FM NTREKDL+LF + + + T Sbjct: 129 KSYEVGIKPYTEKQISYDEAFERAIVPFKDFMIKNTREKDLALFFRIRNLENPQT----V 184 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D + +LIP+FMISEL+ +F IGFL+ LPFL+IDM++++++MAMGMMMLPP ISLPFK Sbjct: 185 DDVPLTVLIPAFMISELKTAFWIGFLLYLPFLVIDMVISSVLMAMGMMMLPPVMISLPFK 244 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW+LL+ NLV+ F Sbjct: 245 ILVFVLVDGWNLLIGNLVQGF 265 >gi|94264046|ref|ZP_01287846.1| Flagellar transport protein FliP [delta proteobacterium MLMS-1] gi|93455557|gb|EAT05744.1| Flagellar transport protein FliP [delta proteobacterium MLMS-1] Length = 252 Score = 201 bits (510), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 95/201 (47%), Positives = 141/201 (70%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T+LS+AP +L+M+TCF R I+VFS LR +G +PPN V+I LALF+T ++M+P Sbjct: 55 VLTVLSMAPAILLMMTCFTRLIVVFSFLRNAIGTQQMPPNQVLIGLALFLTVFIMAPVFS 114 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + + + P M+ +I A++ AEP FM TREKDL LF+ ++ S Sbjct: 115 QINQQAVGPYMDEEIGIEEALRTAAEPLREFMFKQTREKDLELFLGLSQSPRPQ----NK 170 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D + +LIP+FMISEL+ +F IGF++ +PFL+IDM+VA+++++MGMMMLPP I+LPFK Sbjct: 171 DDVSTFVLIPAFMISELKTAFTIGFILFIPFLVIDMVVASVLLSMGMMMLPPIMIALPFK 230 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW L+V +LV+SF Sbjct: 231 ILLFVLVDGWYLIVGSLVRSF 251 >gi|94266368|ref|ZP_01290067.1| Flagellar transport protein FliP [delta proteobacterium MLMS-1] gi|93453020|gb|EAT03508.1| Flagellar transport protein FliP [delta proteobacterium MLMS-1] Length = 252 Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 95/201 (47%), Positives = 141/201 (70%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T+LS+AP +L+M+TCF R I+VFS LR +G +PPN V+I LALF+T ++M+P Sbjct: 55 VLTVLSMAPAILLMMTCFTRLIVVFSFLRNAIGTQQMPPNQVLIGLALFLTVFIMAPVFS 114 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + + + P M+ +I A++ AEP FM TREKDL LF+ ++ S Sbjct: 115 QINQQAVGPYMDEEIGIEEALRTAAEPLREFMFKQTREKDLELFLGLSQSPRPQ----NK 170 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D + +LIP+FMISEL+ +F IGF++ +PFL+IDM+VA+++++MGMMMLPP I+LPFK Sbjct: 171 DDVSTFVLIPAFMISELKTAFTIGFILFIPFLVIDMVVASVLLSMGMMMLPPIMIALPFK 230 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW L+V +LV+SF Sbjct: 231 ILLFVLVDGWYLIVGSLVRSF 251 >gi|239826628|ref|YP_002949252.1| flagellar biosynthesis protein FliP [Geobacillus sp. WCH70] gi|239806921|gb|ACS23986.1| flagellar biosynthetic protein FliP [Geobacillus sp. WCH70] Length = 222 Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 100/217 (46%), Positives = 154/217 (70%), Gaps = 9/217 (4%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P ++S+S V+ + T+LSIAP +LIM+TCF R +IV S +RT +G +PPN V++ Sbjct: 13 PENVSMS---VKLLLLLTVLSIAPGILIMMTCFTRIVIVLSFVRTSLGTQQMPPNQVLVG 69 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 LALF+TF++M+PT + +QPL + +I+ A +R + P FM +TR+KDL+LF+ Sbjct: 70 LALFLTFFIMAPTFKEINDQALQPLFSEKISLEQAYERASVPIKEFMSKHTRQKDLALFL 129 Query: 150 DMAHSSHRNTDITKN-DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208 S+ + K+ I L+P+F ISE++ +F++GF+I +PFL+IDMIVA+++M+ Sbjct: 130 -----SYSGAEKPKSVQDIPLTTLVPAFAISEIKTAFQMGFMIFIPFLVIDMIVASVLMS 184 Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MGMMMLPP ISLPFK++ FVL+DGW L+V++L++SF Sbjct: 185 MGMMMLPPVMISLPFKILLFVLVDGWYLVVKSLLESF 221 >gi|150019068|ref|YP_001311322.1| flagellar biosynthetic protein FliP [Clostridium beijerinckii NCIMB 8052] gi|149905533|gb|ABR36366.1| flagellar biosynthetic protein FliP [Clostridium beijerinckii NCIMB 8052] Length = 259 Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 99/225 (44%), Positives = 152/225 (67%), Gaps = 6/225 (2%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 S D + P D S ++ FTILS+ P ++IM+T F R ++VFS L++ MG+ Sbjct: 41 SFGDGNSTPQDYVSS---IKILIFFTILSLLPSIVIMMTSFTRIVVVFSFLKSAMGVQQA 97 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PN ++ LA+F+T ++M P + IQP + N+IT+ A + ++P FM TR Sbjct: 98 VPNQILTGLAIFLTLFIMQPVYNEVNTKAIQPYLENKITQDQAFEEASKPLKAFMLKQTR 157 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 EKDL LF+++ N +TK +++ + LIP+F ISEL+ +F+IGFLI LPFL+IDM+ Sbjct: 158 EKDLELFVEIGGVDKEN--LTK-ENVSFTTLIPAFAISELKTAFQIGFLIYLPFLVIDMV 214 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 V++++M+MGM MLPPT +SLPFK+I FV++DGW LLV++L++SF+ Sbjct: 215 VSSVLMSMGMFMLPPTMVSLPFKLILFVMVDGWYLLVKSLIQSFM 259 >gi|91785622|ref|YP_560828.1| flagellar biosynthesis protein FliP [Burkholderia xenovorans LB400] gi|91689576|gb|ABE32776.1| Flagellar transport protein FliP [Burkholderia xenovorans LB400] Length = 279 Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 104/242 (42%), Positives = 156/242 (64%), Gaps = 7/242 (2%) Query: 8 ALFLVTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64 AL L P L FA+++ N P + + V+T + T+LS P +++M+T F R Sbjct: 42 ALMLALPTLSFAQAAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTR 101 Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124 IIV S+LR +G + PPN V++ LALF+T +VMSP LD++ G +P + I TA Sbjct: 102 IIIVLSLLRQALGTTTTPPNQVLVGLALFLTLFVMSPVLDKAYTDGYKPFSDGTIPMETA 161 Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184 + R PF FM TRE DL+LF ++H++ + + + +L+PSF+ SEL+ Sbjct: 162 VNRGLAPFKTFMLRQTRESDLALFARISHAA----PMQGPEDVPLSLLVPSFVTSELKTG 217 Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 F+IGF I +PFLIIDM+VA+++M+MGMMM+ P +ISLPFK++ FVL+DGW LL+ +L +S Sbjct: 218 FQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATISLPFKLMLFVLVDGWQLLLGSLAQS 277 Query: 245 FI 246 F+ Sbjct: 278 FV 279 >gi|154174223|ref|YP_001408145.1| flagellar biosynthesis protein FliP [Campylobacter curvus 525.92] gi|112802855|gb|EAU00199.1| flagellar biosynthetic protein FliP [Campylobacter curvus 525.92] Length = 245 Score = 200 bits (509), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 107/200 (53%), Positives = 140/200 (70%), Gaps = 6/200 (3%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 TIL++AP L+ M+T F R IIVFS LR MG VPP+ VIISLA+ +TF++M P +S Sbjct: 50 TILTLAPSLVFMMTSFLRLIIVFSFLRQAMGTQQVPPSTVIISLAMVLTFFIMEPIGRQS 109 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-D 165 + G++P + QI +R +PF FM NTREKDL+LF + RN N D Sbjct: 110 YDEGVKPYLAEQIGYEEMFERSVKPFKNFMVKNTREKDLALFFRI-----RNLQNPSNID 164 Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225 I I + +FMISEL+ +FEI FL+ LPFL+IDM+V++++MAMGMMMLPP ISLPFK+ Sbjct: 165 DIPLSIAMSAFMISELKTAFEIAFLLYLPFLVIDMVVSSVLMAMGMMMLPPVMISLPFKL 224 Query: 226 IFFVLIDGWSLLVENLVKSF 245 + FVL+DGW+LLV NLVKSF Sbjct: 225 LIFVLVDGWNLLVGNLVKSF 244 >gi|116514991|ref|YP_802620.1| flagellar biosynthesis protein FliP [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256845|gb|ABJ90527.1| type III protein export, membrane component [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 244 Score = 200 bits (509), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 104/238 (43%), Positives = 165/238 (69%), Gaps = 6/238 (2%) Query: 10 FLVTPEL-VFAKSSLHDVMN-IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67 FL P + +F K S + + + IP + ++ + V++ I TI+S P ++M+TCF R II Sbjct: 9 FLFFPSVFLFEKFSNNKICSFIPDEFNLLNFSVKSSAILTIISFLPACILMMTCFTRIII 68 Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127 V S+LRT +G+ PPN ++I L+LF+TF++MSPTL++ + PL ++I A+++ Sbjct: 69 VLSLLRTALGVPYSPPNQILIGLSLFLTFFIMSPTLNKIYNTALIPLYKHEINTEVALKK 128 Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187 + +P +FM TR+ D+S+F +A S K D+I + IL+PSF+ISEL+ +F+I Sbjct: 129 IIKPIHIFMLKQTRKSDISVFWKLAKISFP----MKKDNIPFYILLPSFIISELKTAFQI 184 Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GF ++LPFLIID+++A+I+M++G+MM+ P++ISLP K+I FVL DGW LLV +L KSF Sbjct: 185 GFTVLLPFLIIDLVIASILMSLGIMMISPSTISLPLKLILFVLSDGWKLLVVSLAKSF 242 >gi|311279110|ref|YP_003941341.1| flagellar biosynthetic protein FliP [Enterobacter cloacae SCF1] gi|308748305|gb|ADO48057.1| flagellar biosynthetic protein FliP [Enterobacter cloacae SCF1] Length = 245 Score = 200 bits (508), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 100/227 (44%), Positives = 152/227 (66%), Gaps = 6/227 (2%) Query: 21 SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 + L +++ P +W V+T T L+ P +L+M+T F R IIVF +LR+ +G Sbjct: 21 AQLPGLVSQPLPGGGQSWSLPVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRSALGT 80 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 S PPN V++ LALF+TF++MSP +D+ QP +N+IT AI + A+P FM Sbjct: 81 ASAPPNQVLLGLALFLTFFIMSPVIDKIYTDAYQPFNDNKITLEQAIDKGAQPLREFMLR 140 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 TRE DL+LF ++HS I + + RIL+P+++ SEL+ +F+IGF I +PFLII Sbjct: 141 QTREADLALFARLSHSE----PIQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLII 196 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 D+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 197 DLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243 >gi|238927449|ref|ZP_04659209.1| flagellar biosynthesis protein FliP [Selenomonas flueggei ATCC 43531] gi|238884731|gb|EEQ48369.1| flagellar biosynthesis protein FliP [Selenomonas flueggei ATCC 43531] Length = 256 Score = 200 bits (508), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 96/216 (44%), Positives = 151/216 (69%), Gaps = 7/216 (3%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P D++ S I+ + TI+S+AP +L+M T F R ++V LR + +VPPN V+I+ Sbjct: 47 PQDVATSMQIL---AVLTIMSLAPAILVMTTSFVRIVVVIGFLRNALSTQNVPPNQVVIA 103 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 L+LF+TFY+M+P ++ E GIQP + QIT+ A++ + +P FM TRE DL+LF+ Sbjct: 104 LSLFLTFYIMAPYWGQANENGIQPYLAGQITQEQALENIVDPMREFMLRQTRESDLALFV 163 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 +++ + N + + LIP+F+ISEL+ +F++GF+I +PF++IDMIVA+ +M+M Sbjct: 164 NLSDAPRPNGP----EDVSTFTLIPAFIISELKTAFQLGFMIYIPFIVIDMIVASTLMSM 219 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMMLPP ISLPFK++ FV++DGW LL+++L+ SF Sbjct: 220 GMMMLPPVMISLPFKILLFVMVDGWHLLIQSLIMSF 255 >gi|99082784|ref|YP_614938.1| flagellar biosynthesis protein FliP [Ruegeria sp. TM1040] gi|99039064|gb|ABF65676.1| Flagellar biosynthetic protein fliP [Ruegeria sp. TM1040] Length = 248 Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 104/239 (43%), Positives = 153/239 (64%), Gaps = 7/239 (2%) Query: 7 FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66 FAL L P++ A+ +N+ SIS ++ + T+LS+AP LL+M+TCFP I Sbjct: 14 FAL-LAQPQVALAQ---ELSLNLADGQSISARTIQLILLITVLSVAPGLLVMLTCFPFLI 69 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 V SILR +G+ PPN+++ISLA+F+T++VM P + E GI PL++ ++ A++ Sbjct: 70 TVLSILRQAIGLQQAPPNMLMISLAMFLTYFVMEPVFTEAWETGIAPLIDEELEVVPALE 129 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 R EPF VFM N D+ +D + + +LIPSFM+SE+ R+FE Sbjct: 130 RAVEPFRVFMANRLDPDTYYAIADL-RPGTEGSDPSPESPLS--VLIPSFMLSEITRAFE 186 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGFL+ LPFL+ID++ A I+M+MGMMM+PP +SLPFK+ FFV+ DGWSL+ LV+S+ Sbjct: 187 IGFLVFLPFLVIDLVTAAILMSMGMMMVPPALVSLPFKLAFFVVADGWSLIASALVRSY 245 >gi|56419769|ref|YP_147087.1| flagellar biosynthesis protein FliP [Geobacillus kaustophilus HTA426] gi|56379611|dbj|BAD75519.1| flagellar biosynthetic protein [Geobacillus kaustophilus HTA426] Length = 222 Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 99/206 (48%), Positives = 146/206 (70%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+ + T+LSIAP +LIM+TCF R +IV S +RT +G +PPN V++ LALF+TF++M Sbjct: 20 VKLLLLLTVLSIAPGILIMMTCFTRIVIVLSFVRTALGTQQMPPNQVLVGLALFLTFFIM 79 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +PT + +QPL ++I A +R A P FM TR++DL+LF+ + + T Sbjct: 80 APTWKEINDQALQPLFADKIDLEEAYERAAVPLKQFMSQYTRQEDLALFLSYSGAKQPKT 139 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 ND I L+P+F ISEL+ +F++GF+I +PFL+IDMIVA+++M+MGMMMLPP I Sbjct: 140 ---IND-IPMTALVPAFAISELKTAFQMGFMIFIPFLVIDMIVASVLMSMGMMMLPPVMI 195 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW L+V++L++SF Sbjct: 196 SLPFKILLFVLVDGWHLVVKSLLQSF 221 >gi|307731352|ref|YP_003908576.1| flagellar biosynthetic protein FliP [Burkholderia sp. CCGE1003] gi|307585887|gb|ADN59285.1| flagellar biosynthetic protein FliP [Burkholderia sp. CCGE1003] Length = 277 Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 103/242 (42%), Positives = 155/242 (64%), Gaps = 7/242 (2%) Query: 8 ALFLVTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64 AL L P L FA+++ N P + + V+T + T+LS P +++M+T F R Sbjct: 40 ALMLALPTLSFAQTAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTR 99 Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124 IIV S+LR +G + PPN V++ LALF+T +VMSP LD++ G +P + TA Sbjct: 100 IIIVLSLLRQALGTTTTPPNQVLVGLALFLTLFVMSPVLDKAYTDGYKPFSEGTVPMETA 159 Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184 + R PF FM TRE DL+LF ++H++ + + + +L+PSF+ SEL+ Sbjct: 160 VSRGLAPFKTFMLRQTRESDLALFARISHAA----PMQGPEDVPLSLLVPSFVTSELKTG 215 Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 F+IGF I +PFLIIDM+VA+++M+MGMMM+ P +ISLPFK++ FVL+DGW LL+ +L +S Sbjct: 216 FQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATISLPFKLMLFVLVDGWQLLLGSLAQS 275 Query: 245 FI 246 F+ Sbjct: 276 FV 277 >gi|296330850|ref|ZP_06873325.1| flagellar biosynthesis protein FliP [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|296151855|gb|EFG92729.1| flagellar biosynthesis protein FliP [Bacillus subtilis subsp. spizizenii ATCC 6633] Length = 221 Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 97/206 (47%), Positives = 145/206 (70%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+ + T+ S+AP +LI++TCF R +IV S +RT + S+PPN V+I LALF+TF++M Sbjct: 20 VKLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATQSMPPNQVLIGLALFLTFFIM 79 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +PT + + PLM+N+I+ A + EP FM +TR+KDL+LFM+ A + Sbjct: 80 APTFSEINKEALTPLMDNKISLDEAYSKAEEPIKEFMSKHTRQKDLALFMNYAKMDKPES 139 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 I ++P+F ISEL+ +F+IGF+I +PFLIIDM+VA+++M+MGMMMLPP I Sbjct: 140 ----LKDIPLTTMVPAFAISELKTAFQIGFMIFIPFLIIDMVVASVLMSMGMMMLPPVMI 195 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW L+V++L++SF Sbjct: 196 SLPFKILLFVLVDGWYLIVKSLLQSF 221 >gi|242238991|ref|YP_002987172.1| flagellar biosynthetic protein FliP [Dickeya dadantii Ech703] gi|242131048|gb|ACS85350.1| flagellar biosynthetic protein FliP [Dickeya dadantii Ech703] Length = 254 Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 104/250 (41%), Positives = 164/250 (65%), Gaps = 13/250 (5%) Query: 1 MIRYCFFALFLVTPELVFAKSS---LHDVMNIPADLSISTWI--VRTFGIFTILSIAPIL 55 ++R FF + +V FA +S L +++ P +W V+T + T L+ P + Sbjct: 11 LVRRSFFTILIV----FFAPNSWAQLPGIISQPLANGAQSWSLPVQTLVLLTSLTFIPAV 66 Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115 L+M+T F R IIV +LR+ +G + PPN ++I L+LF+TF++MSP L + + QP Sbjct: 67 LLMMTSFTRIIIVLGLLRSALGTPTAPPNQILIGLSLFLTFFIMSPVLTKVYQDAYQPFS 126 Query: 116 NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPS 175 N+I TAI+R ++P FM TRE DL+LF +A S ++ + + R+L+P+ Sbjct: 127 ENKINMETAIERGSQPLRQFMLRQTRETDLALFARLAEISA----LSGPEAVPMRVLVPA 182 Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235 F+ SEL+ +F+IGF I +PFLIID++VA+++MA+GMMM+PP ++SLPFK++ FVL+DGW Sbjct: 183 FVTSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGWQ 242 Query: 236 LLVENLVKSF 245 LL+ +LV+SF Sbjct: 243 LLLSSLVQSF 252 >gi|206561840|ref|YP_002232605.1| flagellar biosynthesis protein FliP [Burkholderia cenocepacia J2315] gi|198037882|emb|CAR53826.1| flagellar biosynthetic protein FliP precursor [Burkholderia cenocepacia J2315] Length = 253 Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 98/237 (41%), Positives = 154/237 (64%), Gaps = 7/237 (2%) Query: 12 VTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIV 68 + P L +A+++ N P + + V+T + T+LS P +L+M+T F R IIV Sbjct: 20 LAPALAYAQANGLPAFNASPGPHGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTRIIIV 79 Query: 69 FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128 S+LR +G + PPN V++ LA+F+TF+VMSP LDR+ G +P + + A+QR Sbjct: 80 LSLLRQALGTATTPPNQVLVGLAMFLTFFVMSPVLDRAYNDGYKPFSDGSMPMEQAVQRG 139 Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188 PF FM TRE DL+LF ++ ++ + D + +L+P+F+ SEL+ F+IG Sbjct: 140 VAPFKTFMLKQTRETDLALFAKISKAA----PMQGPDDVPLSLLVPAFVTSELKTGFQIG 195 Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 F + +PFLIIDM+VA+++M+MGMMM+ P+++SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 196 FTVFIPFLIIDMVVASVLMSMGMMMVSPSTVSLPFKLMLFVLVDGWQLLIGSLAQSF 252 >gi|83647846|ref|YP_436281.1| flagellar biosynthesis protein FliP [Hahella chejuensis KCTC 2396] gi|83635889|gb|ABC31856.1| flagellar biosynthetic protein FliP [Hahella chejuensis KCTC 2396] Length = 253 Score = 199 bits (506), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 101/249 (40%), Positives = 159/249 (63%), Gaps = 9/249 (3%) Query: 2 IRYCFFALFLVTPELVFAKS-----SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILL 56 +R + LFL+ P + ++ ++ V N P + ++ + T L+ P L Sbjct: 7 LRLTYLILFLMLPGVAWSAQDAILPAVKLVTN-PDGTQEYSVTLQILALMTALTFIPAFL 65 Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116 +M+T F R IIVFSILR +G+ P N +++ +ALF+TF++M PT ++ E+ +QP + Sbjct: 66 MMMTSFTRIIIVFSILRQALGLQQAPSNQILVGIALFLTFFIMGPTFKQANEVALQPYLA 125 Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176 Q+T A+ + +EPF FM TRE DL LF+ +A ++ + + + + IL+P+F Sbjct: 126 EQLTAQEAVAKASEPFREFMLRQTRESDLGLFIRLAGDENKYAN---PEEVPFTILMPAF 182 Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236 + SEL+ +F+IGFLI +PFLIIDM+VA+++MAMGMMML P ISLPFK++ FVL+DGW+L Sbjct: 183 VTSELKTAFQIGFLIFIPFLIIDMVVASVLMAMGMMMLSPIIISLPFKIMLFVLVDGWAL 242 Query: 237 LVENLVKSF 245 ++ L SF Sbjct: 243 IMGTLAASF 251 >gi|78064698|ref|YP_367467.1| flagellar biosynthesis protein FliP [Burkholderia sp. 383] gi|77965443|gb|ABB06823.1| Flagellar transport protein FliP [Burkholderia sp. 383] Length = 253 Score = 199 bits (506), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 99/246 (40%), Positives = 157/246 (63%), Gaps = 7/246 (2%) Query: 3 RYCFFALFLVTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMV 59 R+ + + P L FA+++ N P + + V+T + T+LS P +L+M+ Sbjct: 11 RFAPVLILCLAPALAFAQANGLPAFNASPGPHGGTTYSLSVQTMLLLTMLSFLPAMLLMM 70 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R IIV S+LR +G + PPN V++ LA+F+TF+VMSP LDR+ G +P + + Sbjct: 71 TSFTRIIIVLSLLRQALGTATTPPNQVLVGLAMFLTFFVMSPVLDRAYNDGYKPFSDGSM 130 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 A+QR PF FM TRE DL+LF ++ ++ + + + +L+P+F+ S Sbjct: 131 PMEQAVQRGVAPFKTFMLKQTRETDLALFAKISKAA----PMQGPEDVPLSLLVPAFVTS 186 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+ F+IGF + +PFLIIDM+VA+++M+MGMMM+ P+++SLPFK++ FVL+DGW LL+ Sbjct: 187 ELKTGFQIGFTVFIPFLIIDMVVASVLMSMGMMMVSPSTVSLPFKLMLFVLVDGWQLLIG 246 Query: 240 NLVKSF 245 +L +SF Sbjct: 247 SLAQSF 252 >gi|42524694|ref|NP_970074.1| flagellar biosynthesis protein FliP [Bdellovibrio bacteriovorus HD100] gi|39576904|emb|CAE78133.1| flagellar protein required for flagellar formation [Bdellovibrio bacteriovorus HD100] Length = 252 Score = 199 bits (506), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 97/206 (47%), Positives = 142/206 (68%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+ + T+L++AP +LIM+T F R IIV S LR MG+ +PPN +++ LALF+TF+VM Sbjct: 50 VKLIMVMTVLTLAPAILIMMTGFTRIIIVLSFLRQAMGVQQMPPNQLLVGLALFLTFFVM 109 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P + GIQP M I++ AI+R P FM N TR+ DL+LF+ ++ T Sbjct: 110 QPAFNEMNTNGIQPYMAGTISQDQAIERTFAPLRKFMFNQTRDSDLALFIKLSKVEKPKT 169 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + +L+P+F++SEL+ +F+IGF+I LPFL+ID++ A+++MAMGMMMLPP I Sbjct: 170 ----RADVPTMVLVPAFVVSELKTAFQIGFIIFLPFLVIDIVAASVLMAMGMMMLPPVVI 225 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW LL+ ++VKSF Sbjct: 226 SLPFKIMLFVLVDGWGLLIGSMVKSF 251 >gi|259417183|ref|ZP_05741102.1| flagellar biosynthetic protein FliP [Silicibacter sp. TrichCH4B] gi|259346089|gb|EEW57903.1| flagellar biosynthetic protein FliP [Silicibacter sp. TrichCH4B] Length = 248 Score = 199 bits (506), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 100/237 (42%), Positives = 153/237 (64%), Gaps = 6/237 (2%) Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIV 68 + LV P++ A+ +N+ SIS ++ + T+LS+AP LL+M+TCFP I V Sbjct: 15 VLLVQPQVALAQ---ELSLNLADGQSISARTIQLILLITVLSVAPGLLVMLTCFPFLITV 71 Query: 69 FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128 SILR +G+ PPN+++ISLA+F+T++VM P + + GI PL++ ++ A++R Sbjct: 72 LSILRQAIGLQQAPPNMLMISLAMFLTYFVMEPVFTEAWDTGIAPLIDEELEVVPALERA 131 Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188 EPF VFM N D+ + +D + + +LIPSFM+SE+ R+FEIG Sbjct: 132 VEPFRVFMANRLDPDTYYAIADL-RPGTQGSDPSPESPLS--VLIPSFMLSEITRAFEIG 188 Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 FL+ LPFL+ID++ A ++M+MGMMM+PP +SLPFK+ FFV+ DGWSL+ LV+S+ Sbjct: 189 FLVFLPFLVIDLVTAAVLMSMGMMMVPPALVSLPFKLAFFVVADGWSLIASALVRSY 245 >gi|16078698|ref|NP_389517.1| flagellar biosynthesis protein FliP [Bacillus subtilis subsp. subtilis str. 168] gi|221309513|ref|ZP_03591360.1| flagellar biosynthesis protein FliP [Bacillus subtilis subsp. subtilis str. 168] gi|221313837|ref|ZP_03595642.1| flagellar biosynthesis protein FliP [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318760|ref|ZP_03600054.1| flagellar biosynthesis protein FliP [Bacillus subtilis subsp. subtilis str. JH642] gi|221323032|ref|ZP_03604326.1| flagellar biosynthesis protein FliP [Bacillus subtilis subsp. subtilis str. SMY] gi|321315402|ref|YP_004207689.1| flagellar biosynthesis protein FliP [Bacillus subtilis BSn5] gi|544315|sp|P35528|FLIP_BACSU RecName: Full=Flagellar biosynthetic protein fliP gi|142931|gb|AAA22453.1| flagellar protein [Bacillus subtilis] gi|2634007|emb|CAB13508.1| component of the flagellar export machinery [Bacillus subtilis subsp. subtilis str. 168] gi|291484188|dbj|BAI85263.1| flagellar biosynthesis protein FliP [Bacillus subtilis subsp. natto BEST195] gi|320021676|gb|ADV96662.1| flagellar biosynthesis protein FliP [Bacillus subtilis BSn5] Length = 221 Score = 199 bits (506), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 97/206 (47%), Positives = 145/206 (70%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+ + T+ S+AP +LI++TCF R +IV S +RT + S+PPN V+I LALF+TF++M Sbjct: 20 VKLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATQSMPPNQVLIGLALFLTFFIM 79 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +PT + + PLM+N+I+ A + EP FM +TR+KDL+LFM+ A + Sbjct: 80 APTFSEINKEALTPLMDNKISLDEAYTKAEEPIKEFMSKHTRQKDLALFMNYAKMDKPES 139 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 I ++P+F ISEL+ +F+IGF+I +PFLIIDM+VA+++M+MGMMMLPP I Sbjct: 140 ----LKDIPLTTMVPAFAISELKTAFQIGFMIFIPFLIIDMVVASVLMSMGMMMLPPVMI 195 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW L+V++L++SF Sbjct: 196 SLPFKILLFVLVDGWYLIVKSLLQSF 221 >gi|304438440|ref|ZP_07398380.1| flagellar biosynthetic protein FliP [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368523|gb|EFM22208.1| flagellar biosynthetic protein FliP [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 249 Score = 199 bits (506), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 94/218 (43%), Positives = 151/218 (69%), Gaps = 7/218 (3%) Query: 28 NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87 N P D++ S ++ + T++S+AP + +M T F R ++V LR + +VPPN V+ Sbjct: 38 NNPQDVATS---MQVLAVLTVMSLAPAIFVMTTSFVRIVVVIGFLRNALSTQNVPPNQVV 94 Query: 88 ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147 I+L+LF+TFY+M+P ++ E GIQP + QIT+ A++ + +P FM TRE DL+L Sbjct: 95 IALSLFLTFYIMAPYWGQANENGIQPYLEGQITQEQALENIVDPMREFMLRQTRESDLAL 154 Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 F++++ + + + + LIP+F+ISEL+ +F+IGF+I +PF++IDMIVA+ +M Sbjct: 155 FVNLSDAPRPDGP----EDVSTFTLIPAFIISELKTAFQIGFMIYIPFIVIDMIVASTLM 210 Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MGMMMLPP ISLPFK++ FV++DGW LL+++L+ SF Sbjct: 211 SMGMMMLPPVMISLPFKILLFVMVDGWHLLIQSLIMSF 248 >gi|261419434|ref|YP_003253116.1| flagellar biosynthesis protein FliP [Geobacillus sp. Y412MC61] gi|297530591|ref|YP_003671866.1| flagellar biosynthetic protein FliP [Geobacillus sp. C56-T3] gi|319766249|ref|YP_004131750.1| flagellar biosynthetic protein FliP [Geobacillus sp. Y412MC52] gi|261375891|gb|ACX78634.1| flagellar biosynthetic protein FliP [Geobacillus sp. Y412MC61] gi|297253843|gb|ADI27289.1| flagellar biosynthetic protein FliP [Geobacillus sp. C56-T3] gi|317111115|gb|ADU93607.1| flagellar biosynthetic protein FliP [Geobacillus sp. Y412MC52] Length = 222 Score = 199 bits (506), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 99/206 (48%), Positives = 146/206 (70%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+ + T+LSIAP +LIM+TCF R +IV S +RT +G +PPN V++ LALF+TF++M Sbjct: 20 VKLLLLLTVLSIAPGILIMMTCFTRIVIVLSFVRTALGTQQMPPNQVLVGLALFLTFFIM 79 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +PT + +QPL ++I A +R A P FM TR++DL+LF+ + + T Sbjct: 80 APTWKDINDQALQPLFADKIDLEEAYERAAVPLKQFMSQYTRQEDLALFLSYSGAKQPKT 139 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 ND I L+P+F ISEL+ +F++GF+I +PFL+IDMIVA+++M+MGMMMLPP I Sbjct: 140 ---IND-IPMTALVPAFAISELKTAFQMGFMIFIPFLVIDMIVASVLMSMGMMMLPPVMI 195 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW L+V++L++SF Sbjct: 196 SLPFKILLFVLVDGWHLVVKSLLQSF 221 >gi|187925750|ref|YP_001897392.1| flagellar biosynthesis protein FliP [Burkholderia phytofirmans PsJN] gi|187716944|gb|ACD18168.1| flagellar biosynthetic protein FliP [Burkholderia phytofirmans PsJN] Length = 277 Score = 199 bits (505), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 102/236 (43%), Positives = 153/236 (64%), Gaps = 7/236 (2%) Query: 14 PELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70 P L FA+++ N P + + V+T + T+LS P +L+M+T F R IIV S Sbjct: 46 PTLSFAQAAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTRIIIVLS 105 Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130 +LR +G + PPN V++ LALF+T +VMSP LD++ G +P + I TA+ R Sbjct: 106 LLRQALGTSTTPPNQVLVGLALFLTLFVMSPVLDKAYTDGYKPFSDGTIPMETAVNRGLA 165 Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190 PF FM TRE DL+LF ++H++ + + + +L+PSF+ SEL+ F+IGF Sbjct: 166 PFKTFMLRQTRESDLALFARISHAA----PMQGPEDVPLSLLVPSFVTSELKTGFQIGFT 221 Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 I +PFLIIDM+VA+++M+MGMMM+ P +ISLPFK++ FVL+DGW LL+ +L +SF+ Sbjct: 222 IFIPFLIIDMVVASVLMSMGMMMVSPATISLPFKLMLFVLVDGWQLLLGSLAQSFV 277 >gi|253702494|ref|YP_003023683.1| flagellar biosynthesis protein FliP [Geobacter sp. M21] gi|251777344|gb|ACT19925.1| flagellar biosynthetic protein FliP [Geobacter sp. M21] Length = 247 Score = 199 bits (505), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 96/216 (44%), Positives = 149/216 (68%), Gaps = 7/216 (3%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 PAD+S+ +++ F + T++S+AP LL+M T F R ++V S LR+ +G P N ++I Sbjct: 38 PADVSV---VLQIFFLMTVISLAPSLLMMTTSFTRIVVVLSFLRSALGTQQAPSNQIVIG 94 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 L+LF+TF++M+P + +QP +QIT+ A++R P FM + REKDL+LF+ Sbjct: 95 LSLFLTFFIMAPVWQQVNANALQPYRASQITQEEAVKRGVAPLRKFMLSQVREKDLALFI 154 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 +++ D I LIP++M+SEL+ +F+IGFLI +PFL++DM+VA+++M+M Sbjct: 155 NLSKLPRPK----NADDIPTLTLIPAYMVSELKTAFQIGFLIFIPFLVLDMVVASVLMSM 210 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMMLPP ISLPFK++ FVL+DGW L++ +LVKSF Sbjct: 211 GMMMLPPVMISLPFKILLFVLVDGWGLVIGSLVKSF 246 >gi|315453643|ref|YP_004073913.1| flagellar biosynthesis protein [Helicobacter felis ATCC 49179] gi|315132695|emb|CBY83323.1| flagellar biosynthesis protein [Helicobacter felis ATCC 49179] Length = 252 Score = 199 bits (505), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 98/195 (50%), Positives = 142/195 (72%), Gaps = 6/195 (3%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP L++ +T F R I+VFS LRT +G PP +++SLAL +TF++M PT +S ++ I Sbjct: 59 APSLVLTMTSFIRLIVVFSFLRTALGTQQTPPTQILVSLALILTFFIMEPTAKKSYKIAI 118 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYR 170 +P + +I+ T A +R PF FM NTREKDL+LF + RN + K+ + + Sbjct: 119 KPYLAEKISYTQAFERGVVPFKEFMLKNTREKDLALFFRI-----RNLENPKDVNSVPLS 173 Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230 +L+P+FMISEL+ +F+IGFL+ LPFL+IDM+V++I+MAMGMMMLPP ISLPFK++ F+L Sbjct: 174 VLVPAFMISELKTAFQIGFLLYLPFLVIDMVVSSILMAMGMMMLPPVMISLPFKILVFIL 233 Query: 231 IDGWSLLVENLVKSF 245 +DG++LL+ENLV SF Sbjct: 234 VDGFNLLIENLVASF 248 >gi|255322335|ref|ZP_05363481.1| flagellar biosynthetic protein FliP [Campylobacter showae RM3277] gi|255300708|gb|EET79979.1| flagellar biosynthetic protein FliP [Campylobacter showae RM3277] Length = 246 Score = 199 bits (505), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 102/195 (52%), Positives = 141/195 (72%), Gaps = 6/195 (3%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP L+ M+T F R IIVFS LR MG +PP+ V+ISLA+ +TF++M P ++ E G+ Sbjct: 56 APSLVFMMTSFLRLIIVFSFLRQAMGTQQMPPSTVLISLAMVLTFFIMEPVGKQAYEAGV 115 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYR 170 QP ++ QI A +R +PF FM NTREKDL+LF+ + RN ++ D I Sbjct: 116 QPYLSEQIGYQEAFERGVKPFREFMIKNTREKDLALFLRI-----RNMPNPQSFDDIPLT 170 Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230 +++ +FMISE++ +FEI FL+ LPFL+IDM+V++++MAMGMMMLPPT ISLPFK++ FVL Sbjct: 171 VVMSAFMISEMKTAFEIAFLLYLPFLVIDMVVSSVLMAMGMMMLPPTMISLPFKLLIFVL 230 Query: 231 IDGWSLLVENLVKSF 245 +DGW+LLV NLVKSF Sbjct: 231 VDGWNLLVMNLVKSF 245 >gi|92114088|ref|YP_574016.1| flagellar biosynthesis protein FliP [Chromohalobacter salexigens DSM 3043] gi|91797178|gb|ABE59317.1| flagellar biosynthetic protein FliP [Chromohalobacter salexigens DSM 3043] Length = 249 Score = 199 bits (505), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 105/247 (42%), Positives = 158/247 (63%), Gaps = 7/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIM 58 M+R L L P + + + +++ P W + +T + L+ P LL+ Sbjct: 6 MLRCGLAVLLLAWPAFGWGQE-ISGIVSEPTGDGGQQWSLSLQTLLFLSSLAFLPALLLG 64 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +TCF R IIV S+LRT +G S PPN V++ LALFMTF++MSP LDR E P + Sbjct: 65 MTCFTRIIIVLSLLRTAIGTQSTPPNQVLLGLALFMTFFIMSPVLDRVHEQAWVPFSEER 124 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ A+++ ++PF FM TRE DL+LF MA + ++ + + R+LIP+F+ Sbjct: 125 ISLEQALEQGSQPFREFMFGQTRETDLALFARMADAD----EMQGPEDVPMRLLIPAFLT 180 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF I +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ Sbjct: 181 SELKTAFQIGFSIFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLI 240 Query: 239 ENLVKSF 245 +L +SF Sbjct: 241 GSLAESF 247 >gi|311068157|ref|YP_003973080.1| flagellar biosynthesis protein FliP [Bacillus atrophaeus 1942] gi|310868674|gb|ADP32149.1| flagellar biosynthesis protein FliP [Bacillus atrophaeus 1942] Length = 221 Score = 198 bits (504), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 97/206 (47%), Positives = 145/206 (70%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+ + T+ S+AP +LI++TCF R +IV S +RT + S+PPN V+I LALF+TF++M Sbjct: 20 VKLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATQSMPPNQVLIGLALFLTFFIM 79 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +PT + + PLM+N+I+ A + EP FM +TR+KDL+LFM+ A + Sbjct: 80 APTFSDINKEALTPLMDNKISLDEAYTKAEEPIKEFMSKHTRQKDLALFMNYAKMDKPES 139 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 I ++P+F ISEL+ +F+IGF+I +PFLIIDM+VA+++M+MGMMMLPP I Sbjct: 140 ----LKDIPLTTMVPAFAISELKTAFQIGFMIFIPFLIIDMVVASVLMSMGMMMLPPVMI 195 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW L+V++L++SF Sbjct: 196 SLPFKILLFVLVDGWYLIVKSLLQSF 221 >gi|197120185|ref|YP_002140612.1| flagellar biosynthesis protein FliP [Geobacter bemidjiensis Bem] gi|197089545|gb|ACH40816.1| flagellar biogenesis protein FliP [Geobacter bemidjiensis Bem] Length = 247 Score = 198 bits (504), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 95/216 (43%), Positives = 149/216 (68%), Gaps = 7/216 (3%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 PAD+S+ +++ F + T++S+AP LL+M T F R ++V S LR+ +G P N +++ Sbjct: 38 PADVSV---VLQIFFLMTVISLAPSLLMMTTSFTRIVVVLSFLRSALGTQQAPSNQIVVG 94 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 L+LF+TF++M+P + +QP +QIT+ A++R P FM + REKDL+LF+ Sbjct: 95 LSLFLTFFIMAPVWQQVNANALQPYRASQITQEEAVKRGVAPLRKFMLSQVREKDLALFI 154 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 +++ D I LIP++M+SEL+ +F+IGFLI +PFL++DM+VA+++M+M Sbjct: 155 NLSKLPRPK----NADDIPTLTLIPAYMVSELKTAFQIGFLIFIPFLVLDMVVASVLMSM 210 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMMLPP ISLPFK++ FVL+DGW L++ +LVKSF Sbjct: 211 GMMMLPPVMISLPFKILLFVLVDGWGLVIGSLVKSF 246 >gi|332284032|ref|YP_004415943.1| flagellar biosynthesis protein FliP [Pusillimonas sp. T7-7] gi|330427985|gb|AEC19319.1| flagellar biosynthesis protein FliP [Pusillimonas sp. T7-7] Length = 257 Score = 198 bits (504), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 101/234 (43%), Positives = 153/234 (65%), Gaps = 6/234 (2%) Query: 14 PELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71 P + A+++L + + TW ++T + T++S P +L+M+T F R IIV + Sbjct: 26 PAMGLAQTTLPALTSAVNPDGSQTWSLSIQTLVLLTMMSFLPAMLMMMTGFTRIIIVLGL 85 Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131 LR MG G+ PPN ++I LALF+TF+ MSP D+ QPL N I A++R +P Sbjct: 86 LRNAMGTGASPPNSILIGLALFLTFFAMSPVFDQIYADAYQPLSNGVIAFEEALERGIKP 145 Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191 FM + TRE DL++F +MA+ + T + + R+L+P+FM SEL+ +F+IGF I Sbjct: 146 LHSFMLHQTREADLTMFANMANVAELQTA----EEVPLRVLVPAFMASELKTAFQIGFTI 201 Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL DGW LL+ +L +SF Sbjct: 202 FIPFLIIDLVVASVLMALGMMMVPPVTISLPFKLMLFVLADGWHLLLGSLARSF 255 >gi|194014385|ref|ZP_03053002.1| flagellar biosynthetic protein FliP [Bacillus pumilus ATCC 7061] gi|194013411|gb|EDW22976.1| flagellar biosynthetic protein FliP [Bacillus pumilus ATCC 7061] Length = 221 Score = 198 bits (504), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 101/222 (45%), Positives = 153/222 (68%), Gaps = 7/222 (3%) Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84 D+ N +IST VR + T+ S+AP +LI++TCF R +IV S +RT + S+PPN Sbjct: 6 DLFNSSGAGNISTS-VRLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATNSMPPN 64 Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144 V++ LALF+TF++M+PT + + PL+N+ IT A ++ P FM +TR+KD Sbjct: 65 QVLVGLALFLTFFIMAPTFSEINKEALTPLLNDDITLNQAYEKAEVPIKEFMSKHTRQKD 124 Query: 145 LSLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVA 203 L+LF+ S+ D ++ I ++P+F ISEL+ +F+IGF+I +PFLIIDM+VA Sbjct: 125 LALFL-----SYAKIDTPESIKDIPLTAMVPAFAISELKTAFQIGFMIFIPFLIIDMVVA 179 Query: 204 TIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +++M+MGMMMLPP ISLPFK++ FVL+DGW L+V++L++SF Sbjct: 180 SVLMSMGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLLQSF 221 >gi|170694404|ref|ZP_02885558.1| flagellar biosynthetic protein FliP [Burkholderia graminis C4D1M] gi|170140827|gb|EDT09001.1| flagellar biosynthetic protein FliP [Burkholderia graminis C4D1M] Length = 284 Score = 198 bits (504), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 102/242 (42%), Positives = 155/242 (64%), Gaps = 7/242 (2%) Query: 8 ALFLVTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64 A+ L P L FA+++ N P + + V+T + T+LS P +++M+T F R Sbjct: 47 AIMLALPTLSFAQTAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTR 106 Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124 IIV S+LR +G + PPN V++ LALF+T +VMSP LD++ G +P + TA Sbjct: 107 IIIVLSLLRQALGTTTTPPNQVLVGLALFLTLFVMSPVLDKAYTDGYKPFSEGTVPMETA 166 Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184 + R PF FM TRE DL+LF ++H++ + + + +L+PSF+ SEL+ Sbjct: 167 VSRGLAPFKTFMLRQTRESDLALFARISHAA----PMQGPEDVPLSLLVPSFVTSELKTG 222 Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 F+IGF I +PFLIIDM+VA+++M+MGMMM+ P +ISLPFK++ FVL+DGW LL+ +L +S Sbjct: 223 FQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATISLPFKLMLFVLVDGWQLLLGSLAQS 282 Query: 245 FI 246 F+ Sbjct: 283 FV 284 >gi|322421721|ref|YP_004200944.1| flagellar biosynthetic protein FliP [Geobacter sp. M18] gi|320128108|gb|ADW15668.1| flagellar biosynthetic protein FliP [Geobacter sp. M18] Length = 252 Score = 198 bits (504), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 96/217 (44%), Positives = 150/217 (69%), Gaps = 9/217 (4%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 PAD+S+ +++ F + T++S+AP LL+M T F R ++V S LR+ +G P N +++ Sbjct: 43 PADVSV---VLQIFFVMTVISLAPSLLMMTTSFTRIVVVLSFLRSALGTQQAPSNQIVVG 99 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 L+LF+TF++M+P + +QP N IT+ A++R P FM + REKDL+LF+ Sbjct: 100 LSLFLTFFIMAPVWQQVNTQALQPYKANTITQEEALKRGVAPLRKFMLSQVREKDLALFI 159 Query: 150 DMAHSSHRNTDITKN-DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208 +++ KN D I LIP++M+SEL+ +F+IGFL+ +PFL++DM+VA+++M+ Sbjct: 160 NLSKLPR-----PKNADDIPTMTLIPAYMVSELKTAFQIGFLVFIPFLVLDMVVASVLMS 214 Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MGMMMLPP ISLPFK++ FVL+DGW L++ +LVKSF Sbjct: 215 MGMMMLPPVMISLPFKILLFVLVDGWGLVIGSLVKSF 251 >gi|302384102|ref|YP_003819925.1| flagellar biosynthetic protein FliP [Brevundimonas subvibrioides ATCC 15264] gi|302194730|gb|ADL02302.1| flagellar biosynthetic protein FliP [Brevundimonas subvibrioides ATCC 15264] Length = 325 Score = 198 bits (503), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 99/219 (45%), Positives = 151/219 (68%), Gaps = 4/219 (1%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 +++ ++ +V+ G+ T+LS+AP ++IM T F R I+V S+LRT +GM PPN V Sbjct: 104 LDLGTGAGLTERVVQLVGLMTVLSLAPSIVIMTTSFVRIIVVLSLLRTALGMQQSPPNAV 163 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 ++SLALF++ VM+PT + + GI+PLM+ Q+ A +EP FM + DL+ Sbjct: 164 LVSLALFLSAIVMAPTWQDAYDSGIRPLMDQQMELPQAFDLASEPVKTFMLAQVDQGDLA 223 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 LF ++ R T+ + R++ P+FMISEL+++FEIGFL+ +PFL+ID++VA+++ Sbjct: 224 LFTRLS----RIEAPTQTVDLPLRVVTPAFMISELKKAFEIGFLLFVPFLVIDLVVASVL 279 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+MGMMMLPP ISLPFK+IFFVL+DGW L+ +LV+SF Sbjct: 280 MSMGMMMLPPVVISLPFKLIFFVLVDGWRLVAGSLVESF 318 >gi|118581840|ref|YP_903090.1| flagellar biosynthesis protein FliP [Pelobacter propionicus DSM 2379] gi|118504550|gb|ABL01033.1| flagellar biosynthetic protein FliP [Pelobacter propionicus DSM 2379] Length = 257 Score = 198 bits (503), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 104/210 (49%), Positives = 144/210 (68%), Gaps = 6/210 (2%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 T ++ F + TILS+AP LLIM T F R ++V S LRT MG P N VI+ L++F+TF Sbjct: 52 TTTIQIFFLLTILSLAPGLLIMTTAFTRIVVVLSFLRTAMGTQGAPSNQVILGLSMFLTF 111 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 ++MSP + QP QI++T AI R P FM + TREKDL+LF+ ++ Sbjct: 112 FIMSPVWQQINNEAYQPWKAQQISQTIAIDRAIMPVRRFMLSQTREKDLALFVSLS---- 167 Query: 157 RNTDITKN-DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215 N KN + I +IP+FMISELR +F+IGFLI +PF+++DM+VA+++M+MGMMMLP Sbjct: 168 -NLPRPKNANDIPTLTIIPAFMISELRTAFQIGFLIYIPFIVVDMVVASVLMSMGMMMLP 226 Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 P ISLPFK++ FVL+DGW L++ +LVKSF Sbjct: 227 PVMISLPFKILLFVLVDGWGLVISSLVKSF 256 >gi|77918770|ref|YP_356585.1| flagellar biosynthesis protein FliP [Pelobacter carbinolicus DSM 2380] gi|77544853|gb|ABA88415.1| flagellar biosynthetic protein FliP [Pelobacter carbinolicus DSM 2380] Length = 248 Score = 198 bits (503), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 99/201 (49%), Positives = 141/201 (70%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 I T+LS+AP +L+M T F R +V S LR MG +PPN VII L+LF+TF+VMSP + Sbjct: 49 IMTVLSVAPAILLMTTAFIRLAVVLSFLRQAMGTQQMPPNQVIIGLSLFLTFFVMSPVFN 108 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + + +QP + +I + A+ EP FM + T E +LSL M++ S H D Sbjct: 109 QINDQAVQPYLTQKIDQKQALTLAVEPMRQFMFSQTTESELSLLMEI--SGH--PDPAGK 164 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + + LIP+FM+SEL+R+F+IGF+I +PFL+IDMIVA+++M+MGMMMLPP ISLPFK Sbjct: 165 EDVPTLTLIPAFMLSELKRAFQIGFMIYIPFLVIDMIVASVLMSMGMMMLPPIIISLPFK 224 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW+L+V +LV+SF Sbjct: 225 LLLFVLVDGWTLIVGSLVQSF 245 >gi|313673292|ref|YP_004051403.1| flagellar biosynthetic protein flip [Calditerrivibrio nitroreducens DSM 19672] gi|312940048|gb|ADR19240.1| flagellar biosynthetic protein FliP [Calditerrivibrio nitroreducens DSM 19672] Length = 244 Score = 198 bits (503), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 102/217 (47%), Positives = 150/217 (69%), Gaps = 7/217 (3%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P D++++ I+ + TILSIAP +LIM+T F R IIVFS LR+ MG PPN V+I Sbjct: 35 PKDVAVTLQIIF---LITILSIAPAILIMMTSFTRIIIVFSFLRSAMGTQQTPPNQVLIG 91 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 LALF+TF++MSP + + P ++ +I T A++ +P FM NTR+KD+ F+ Sbjct: 92 LALFLTFFIMSPVFSEMNKNALAPYLDGKIAFTDALKEAKKPLRKFMLENTRKKDIMTFL 151 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 ++ S T D I +L+P+F+ SEL+ +FEIGFL+ LPFLIID +V++++++M Sbjct: 152 QVSKSPMPKT----VDDIPDMVLLPAFVTSELQTAFEIGFLLFLPFLIIDFVVSSVLLSM 207 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 GMMMLPP IS+PFK++ FVL+DGW+L+V +LVKSF+ Sbjct: 208 GMMMLPPVMISMPFKILLFVLVDGWNLIVMSLVKSFM 244 >gi|157692315|ref|YP_001486777.1| flagellar biosynthesis protein FliP [Bacillus pumilus SAFR-032] gi|157681073|gb|ABV62217.1| flagellar biosynthesis protein FliP [Bacillus pumilus SAFR-032] Length = 221 Score = 198 bits (503), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 101/222 (45%), Positives = 153/222 (68%), Gaps = 7/222 (3%) Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84 D+ N +IST VR + T+ S+AP +LI++TCF R +IV S +RT + S+PPN Sbjct: 6 DLFNSSGAGNISTS-VRLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATNSMPPN 64 Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144 V++ LALF+TF++M+PT + + PL+N+ IT A ++ P FM +TR+KD Sbjct: 65 QVLVGLALFLTFFIMAPTFSEINKEALTPLLNDDITLNQAYEKAEVPIKEFMSKHTRQKD 124 Query: 145 LSLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVA 203 L+LF+ S+ D ++ I ++P+F ISEL+ +F+IGF+I +PFLIIDM+VA Sbjct: 125 LALFL-----SYAKMDTPESIKDIPLTAMVPAFAISELKTAFQIGFMIFIPFLIIDMVVA 179 Query: 204 TIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +++M+MGMMMLPP ISLPFK++ FVL+DGW L+V++L++SF Sbjct: 180 SVLMSMGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLLQSF 221 >gi|56695119|ref|YP_165466.1| flagellar biosynthesis protein FliP [Ruegeria pomeroyi DSS-3] gi|56676856|gb|AAV93522.1| flagellar biosynthetic protein FliP [Ruegeria pomeroyi DSS-3] Length = 247 Score = 198 bits (503), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 98/240 (40%), Positives = 153/240 (63%), Gaps = 4/240 (1%) Query: 8 ALFLVTPELVFAKSSLHDV-MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66 A+ L+T ++ + D+ +++ S+S ++ + T+LS+AP L IM+TCFP + Sbjct: 10 AITLLTGAMLAGPVAAQDISLSLGEGGSVSARTIQLILLITVLSLAPGLAIMITCFPFLV 69 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 V +ILR G+G+ PPN++I+SLALF+T++VM P + GI P+M ++ A++ Sbjct: 70 TVLAILRQGIGLQQSPPNMLIVSLALFLTYFVMEPVFTEAWTTGIAPMMAEELALEPALE 129 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 + PF FM D F MA+ +T +L+PSFM+SE+ R+F+ Sbjct: 130 KAIAPFKAFMAARL---DADTFFAMANLRPDGAALTATPEAPLSVLVPSFMLSEIARAFQ 186 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 IGFL+ LPFLIID++VA ++M+MGMMM+PP ++SLPFK+ FFVL DGWSL+ LV+S++ Sbjct: 187 IGFLVFLPFLIIDLVVAAVLMSMGMMMVPPATVSLPFKLAFFVLADGWSLIASALVRSYM 246 >gi|254433683|ref|ZP_05047191.1| flagellar biosynthetic protein FliP [Nitrosococcus oceani AFC27] gi|207090016|gb|EDZ67287.1| flagellar biosynthetic protein FliP [Nitrosococcus oceani AFC27] Length = 243 Score = 198 bits (503), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 97/209 (46%), Positives = 145/209 (69%), Gaps = 4/209 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 T ++ G+ T+L++ P ++++T F R I+VFSILR +G+ P + ++I LALF+TF Sbjct: 35 TVTLQILGLMTVLTLLPAAVMVMTSFTRIIVVFSILRQALGLAQTPSSQILIGLALFLTF 94 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 ++MSP LD++ + G++P +I+ T A+ RV EPF FM TRE DL LF A S Sbjct: 95 FIMSPVLDKAYQEGVKPYFQEEISVTDALARVREPFHHFMIAQTRETDLKLF---AEISG 151 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 R + + + +L+P+F+ SEL+ +F+IGFL+ +PFLIID++VA+++MAMGMMML P Sbjct: 152 REA-FESPEQVPFSLLVPAFITSELKTAFQIGFLLFIPFLIIDLVVASVLMAMGMMMLSP 210 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +SLPFK++ FVLIDGWSLL+ L SF Sbjct: 211 MLVSLPFKLLLFVLIDGWSLLMGTLASSF 239 >gi|291280091|ref|YP_003496926.1| flagellar transport protein FliP [Deferribacter desulfuricans SSM1] gi|290754793|dbj|BAI81170.1| flagellar transport protein FliP [Deferribacter desulfuricans SSM1] Length = 246 Score = 197 bits (502), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 97/199 (48%), Positives = 141/199 (70%), Gaps = 4/199 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 TIL++AP +L+MVT F R IIVFS LR+ +G PPN V+I LALF+TF++MSP L+ Sbjct: 51 TILTLAPAILLMVTSFTRLIIVFSFLRSALGTQQSPPNQVLIGLALFLTFFIMSPVLNDM 110 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 + +QP M+ ++ T A+ +P F+ NTR+K+L F++++ T D Sbjct: 111 YKNAVQPYMDGKLNFTQALVEAKKPLRKFLLKNTRKKELLTFIEISKVQRPKTP----DD 166 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 I +LIP+F+ SEL+ +FEIGFL+ LPFL+ID +VA+++++MGMMMLPP ISLPFK++ Sbjct: 167 IPDSVLIPAFITSELQTAFEIGFLLFLPFLVIDFVVASVLLSMGMMMLPPVMISLPFKIL 226 Query: 227 FFVLIDGWSLLVENLVKSF 245 FVL+DGW L+V ++VKSF Sbjct: 227 LFVLVDGWGLIVGSMVKSF 245 >gi|288553049|ref|YP_003424984.1| flagellar biosynthesis protein FliP [Bacillus pseudofirmus OF4] gi|288544209|gb|ADC48092.1| flagellar biosynthesis protein FliP [Bacillus pseudofirmus OF4] Length = 234 Score = 197 bits (502), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 97/201 (48%), Positives = 141/201 (70%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T+LS+AP +LI++T F R +IV S +R G+ S+PPN V+I LALF+TF++M+P Sbjct: 37 VLTVLSLAPGILILMTSFTRIVIVLSFVRQGLATQSMPPNQVLIGLALFLTFFIMAPIFA 96 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 E + P + ++T+ A+++ A P FM +TREKDL+LFM A + Sbjct: 97 EVNEQALTPFLEGELTQEEALEQAAVPMKEFMAQHTREKDLALFMGYAGMDRPES----L 152 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D I LIP+F ISEL+ +F+IGFLI +PFL+IDMIVA+++M+MGMMMLPP I+LPFK Sbjct: 153 DDIPLTALIPAFAISELKTAFQIGFLIFVPFLVIDMIVASVLMSMGMMMLPPVMIALPFK 212 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW L+V++L+ SF Sbjct: 213 ILLFVLVDGWYLIVQSLLLSF 233 >gi|32266191|ref|NP_860223.1| flagellar biosynthesis protein FliP [Helicobacter hepaticus ATCC 51449] gi|32262241|gb|AAP77289.1| flagellar basal body protein FliP [Helicobacter hepaticus ATCC 51449] Length = 265 Score = 197 bits (502), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 110/242 (45%), Positives = 159/242 (65%), Gaps = 19/242 (7%) Query: 19 AKSSLHDVMNIP-------ADLSIS-----TWIVRTFGI---FTILSIAPILLIMVTCFP 63 A SS+ V +IP DLS++ T +V T I T+L IAP L++++T F Sbjct: 27 APSSIPSVPSIPNNPILPSVDLSLTAPKEPTELVATLNIVLIITLLVIAPSLVLVMTSFT 86 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 R +IVF+ LRT +G PP V++SLAL +TF++M P +S E+GI+P +I+ Sbjct: 87 RIVIVFAFLRTALGTQQSPPTQVLVSLALILTFFIMEPVATKSYEVGIKPYAEKKISYDE 146 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 A +R PF FM NTREKDL+LF + + + ND + +L+P+FMISEL+ Sbjct: 147 AFERAIVPFKDFMIKNTREKDLALFFRIRQLENPQS---VND-VPLTVLLPAFMISELKT 202 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 +F IGFL+ LPFL+IDM++++++MAMGMMMLPP ISLPFK++ F+L+DGW+LL+ NLV+ Sbjct: 203 AFWIGFLLYLPFLVIDMVISSVLMAMGMMMLPPVMISLPFKILVFILVDGWNLLIGNLVQ 262 Query: 244 SF 245 F Sbjct: 263 GF 264 >gi|77165627|ref|YP_344152.1| flagellar biosynthesis protein FliP [Nitrosococcus oceani ATCC 19707] gi|76883941|gb|ABA58622.1| Flagellar transport protein FliP [Nitrosococcus oceani ATCC 19707] Length = 262 Score = 197 bits (502), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 97/209 (46%), Positives = 145/209 (69%), Gaps = 4/209 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 T ++ G+ T+L++ P ++++T F R I+VFSILR +G+ P + ++I LALF+TF Sbjct: 54 TVTLQILGLMTVLTLLPAAVMVMTSFTRIIVVFSILRQALGLAQTPSSQILIGLALFLTF 113 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 ++MSP LD++ + G++P +I+ T A+ RV EPF FM TRE DL LF A S Sbjct: 114 FIMSPVLDKAYQEGVKPYFQEEISVTDALARVREPFHHFMIAQTRETDLKLF---AEISG 170 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 R + + + +L+P+F+ SEL+ +F+IGFL+ +PFLIID++VA+++MAMGMMML P Sbjct: 171 REA-FESPEQVPFSLLVPAFITSELKTAFQIGFLLFIPFLIIDLVVASVLMAMGMMMLSP 229 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +SLPFK++ FVLIDGWSLL+ L SF Sbjct: 230 MLVSLPFKLLLFVLIDGWSLLMGTLASSF 258 >gi|118474799|ref|YP_891929.1| flagellar biosynthesis protein FliP [Campylobacter fetus subsp. fetus 82-40] gi|118414025|gb|ABK82445.1| flagellar biosynthetic protein FliP [Campylobacter fetus subsp. fetus 82-40] Length = 244 Score = 197 bits (502), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 102/201 (50%), Positives = 140/201 (69%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T+L++AP L+ ++T F R IIVFS LR MG +PP V+ISLAL +TF++M P Sbjct: 47 VLTLLALAPSLIFVMTSFLRLIIVFSFLRQAMGTQQMPPTNVLISLALILTFFIMEPVAK 106 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 +S GI+P + +I A A+PF FM NTREKDL+LF + + NT Sbjct: 107 QSYNEGIKPYLEEKIGYQDAFALGAKPFKEFMVRNTREKDLALFYRIRALPNPNTV---- 162 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D I + I P+F+ISEL+ +FEIGFL+ LPFL+IDM+V++++M+MGMMMLPP ISLPFK Sbjct: 163 DDIPFTIAAPAFIISELKTAFEIGFLLYLPFLVIDMVVSSVLMSMGMMMLPPVMISLPFK 222 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW+LL+ NLV SF Sbjct: 223 LLIFVLVDGWNLLIGNLVASF 243 >gi|238796941|ref|ZP_04640445.1| Flagellar biosynthetic protein fliP [Yersinia mollaretii ATCC 43969] gi|238719201|gb|EEQ11013.1| Flagellar biosynthetic protein fliP [Yersinia mollaretii ATCC 43969] Length = 245 Score = 197 bits (502), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 96/206 (46%), Positives = 142/206 (68%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T + T L+ P +L+M+T F R IIV +LR +G S PPN V++ LALF+TFYVM Sbjct: 42 VQTLVLLTSLTFLPAILLMMTGFTRIIIVLGLLRNALGTPSTPPNQVLLGLALFLTFYVM 101 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP ++ + QPL ++I+ TA++R +P FM TRE DL+L+ MA + Sbjct: 102 SPVFNQIYKEAWQPLSEDKISMETALERGVQPLRTFMLEQTRETDLALYTRMA----KEE 157 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + D + RIL+P+F+ SEL+ F+IGF + +PFLIID++VA+++MA+GMMM+PP +I Sbjct: 158 NFQSQDDVPLRILLPAFVTSELKTGFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATI 217 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 218 SLPFKLMLFVLVDGWQLLMGSLAQSF 243 >gi|320354332|ref|YP_004195671.1| flagellar biosynthetic protein FliP [Desulfobulbus propionicus DSM 2032] gi|320122834|gb|ADW18380.1| flagellar biosynthetic protein FliP [Desulfobulbus propionicus DSM 2032] Length = 246 Score = 197 bits (502), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 95/216 (43%), Positives = 149/216 (68%), Gaps = 7/216 (3%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 PA++S + ++ + TIL++AP +L+M T F R +IV S +R MG + PPN V++ Sbjct: 37 PAEVSTA---LQALLVLTILTVAPAILLMTTAFTRIVIVLSFVRQAMGTQNTPPNQVLLG 93 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 LALF+TF+VM+P+L+ + +QP + +IT+ A++R E FM + +E +L LF+ Sbjct: 94 LALFLTFFVMAPSLNAINDQALQPYIQEKITQQQALERSMEVMRDFMFSQVQESELQLFI 153 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 D+ + ILIP+FM+SEL+R+F++GF+I +PFL+IDM+V++++M+M Sbjct: 154 DITKEEQP----ADKKAVSSSILIPAFMLSELKRAFQMGFMIYVPFLVIDMLVSSVLMSM 209 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMMLPP ISLPFK++ FVL+DGW L+V +L+KSF Sbjct: 210 GMMMLPPIVISLPFKLLLFVLVDGWQLVVGSLMKSF 245 >gi|107021595|ref|YP_619922.1| flagellar biosynthesis protein FliP [Burkholderia cenocepacia AU 1054] gi|116688061|ref|YP_833684.1| flagellar biosynthesis protein FliP [Burkholderia cenocepacia HI2424] gi|170731411|ref|YP_001763358.1| flagellar biosynthesis protein FliP [Burkholderia cenocepacia MC0-3] gi|254246638|ref|ZP_04939959.1| Flagellar biosynthesis pathway, component FliP [Burkholderia cenocepacia PC184] gi|105891784|gb|ABF74949.1| flagellar biosynthetic protein FliP [Burkholderia cenocepacia AU 1054] gi|116646150|gb|ABK06791.1| flagellar biosynthetic protein FliP [Burkholderia cenocepacia HI2424] gi|124871414|gb|EAY63130.1| Flagellar biosynthesis pathway, component FliP [Burkholderia cenocepacia PC184] gi|169814653|gb|ACA89236.1| flagellar biosynthetic protein FliP [Burkholderia cenocepacia MC0-3] Length = 253 Score = 197 bits (502), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 97/237 (40%), Positives = 154/237 (64%), Gaps = 7/237 (2%) Query: 12 VTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIV 68 + P L +A+++ N P + + V+T + T+LS P +L+M+T F R IIV Sbjct: 20 LAPALAYAQANGLPAFNASPGPHGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTRIIIV 79 Query: 69 FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128 S+LR +G + PPN V++ LA+F+TF+VMSP LDR+ G +P + + A+QR Sbjct: 80 LSLLRQALGTATTPPNQVLVGLAMFLTFFVMSPVLDRAYNDGYKPFSDGSMPMEQAVQRG 139 Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188 PF FM TRE DL+LF ++ ++ + + + +L+P+F+ SEL+ F+IG Sbjct: 140 VAPFKTFMLKQTRETDLALFAKISKAA----PMQGPEDVPLSLLVPAFVTSELKTGFQIG 195 Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 F + +PFLIIDM+VA+++M+MGMMM+ P+++SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 196 FTVFIPFLIIDMVVASVLMSMGMMMVSPSTVSLPFKLMLFVLVDGWQLLIGSLAQSF 252 >gi|311030115|ref|ZP_07708205.1| flagellar biosynthesis protein FliP [Bacillus sp. m3-13] Length = 221 Score = 197 bits (501), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 97/199 (48%), Positives = 144/199 (72%), Gaps = 4/199 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T+ S+AP +LI++T F R IIV S +RT + S+PPN V+I LALF+TF++M+PT + Sbjct: 27 TVFSLAPAILILMTSFTRIIIVLSFVRTSLATQSMPPNQVLIGLALFLTFFIMAPTFSQV 86 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 + +QPL N +IT A ++ + P FM +TR+KDL+LF+D A R I + Sbjct: 87 NDQALQPLFNEEITLDEAYEKASIPLKEFMSKHTRQKDLALFIDYA-GMERPESI---ED 142 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 I +L+P+F ISEL+ +F+IGF+I +PFL+IDM+VA+++M+MGMMMLPP ISLPFK++ Sbjct: 143 IPLTVLVPAFAISELKTAFQIGFMIFIPFLVIDMVVASVLMSMGMMMLPPVMISLPFKIL 202 Query: 227 FFVLIDGWSLLVENLVKSF 245 FVL+DGW L+V++L+ +F Sbjct: 203 LFVLVDGWYLIVKSLLLTF 221 >gi|293605018|ref|ZP_06687413.1| flagellar biosynthetic protein FliP [Achromobacter piechaudii ATCC 43553] gi|292816587|gb|EFF75673.1| flagellar biosynthetic protein FliP [Achromobacter piechaudii ATCC 43553] Length = 263 Score = 197 bits (501), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 102/234 (43%), Positives = 149/234 (63%), Gaps = 6/234 (2%) Query: 14 PELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71 P V A+++L + P T+ + +T + T LS P L+M+T F R IIV + Sbjct: 32 PAGVVAQATLPALTATPGPNGSETYSLSMQTMLLMTSLSFLPAALLMMTGFTRIIIVLGL 91 Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131 LR+ MG PPN V+I LALF+TFY MSP D+ +PL I TA++R A P Sbjct: 92 LRSAMGTAMSPPNHVLIGLALFLTFYTMSPVFDKIYADAYKPLSEGSIQFETAVERAAGP 151 Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191 FM + TRE DLSLF ++A + + + RIL+P+F+ SEL+ +F+IGF I Sbjct: 152 LRTFMLHQTRENDLSLFANLA----KQPALEDPSQVPLRILVPAFITSELKTAFQIGFTI 207 Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PFLIID++VA+++MA+GMMM+PP +++LPFK++ FVL DGW+LL+ +L +SF Sbjct: 208 FIPFLIIDLVVASVLMALGMMMVPPVTVALPFKLMLFVLADGWNLLMGSLAQSF 261 >gi|149182519|ref|ZP_01860992.1| flagellar biosynthesis protein P [Bacillus sp. SG-1] gi|148849779|gb|EDL63956.1| flagellar biosynthesis protein P [Bacillus sp. SG-1] Length = 221 Score = 197 bits (501), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 97/206 (47%), Positives = 145/206 (70%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+ +FT+LSIAP +LI++T F R +IV S +RT + +PPN V++ L+LF+TF++M Sbjct: 20 VKLLLLFTVLSIAPGILILMTSFTRIVIVLSFVRTSLATQQMPPNQVLVGLSLFLTFFIM 79 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +PT E + PL N +I A + A PF FM +TR+KDL LF++ + + R Sbjct: 80 APTFQEVNETALTPLFNEEINLEQAYENAAGPFKDFMSKHTRQKDLELFLNYS-GAERPE 138 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 I D I L+P+F +SE++ +F+IGF+I +PFL+IDM+VA+I+M+MGMMMLPP I Sbjct: 139 SI---DDIPLTALVPAFALSEIKTAFQIGFMIFIPFLVIDMVVASILMSMGMMMLPPVMI 195 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW L+V++L++SF Sbjct: 196 SLPFKILLFVLVDGWYLVVKSLLQSF 221 >gi|260598457|ref|YP_003211028.1| flagellar biosynthetic protein fliP [Cronobacter turicensis z3032] gi|260217634|emb|CBA31933.1| Flagellar biosynthetic protein fliP [Cronobacter turicensis z3032] Length = 223 Score = 197 bits (500), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 96/206 (46%), Positives = 142/206 (68%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T T L+ P +L+M+T F R IIVF +LR +G S PPN V++ LALF+TF++M Sbjct: 20 VQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIM 79 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP +D+ QP N+I+ A+ R A+P FM TRE DL+LF +A++ Sbjct: 80 SPVIDKIYSDAYQPFTENKISMEVALDRGAQPLREFMLRQTREADLALFAKLANTQ---- 135 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 I + + RIL+P+++ SEL+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP SI Sbjct: 136 PIQGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASI 195 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 +LPFK++ FVL+DGW LLV +L +SF Sbjct: 196 ALPFKLMLFVLVDGWQLLVGSLAQSF 221 >gi|189426339|ref|YP_001953516.1| flagellar biosynthesis protein FliP [Geobacter lovleyi SZ] gi|189422598|gb|ACD96996.1| flagellar biosynthetic protein FliP [Geobacter lovleyi SZ] Length = 256 Score = 197 bits (500), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 94/216 (43%), Positives = 146/216 (67%), Gaps = 7/216 (3%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 PA+++ + ++ F + T+LS+AP LLIM T F R ++V S LRT +G P N +I++ Sbjct: 47 PAEVATT---IQIFLLLTVLSLAPSLLIMTTSFTRIVVVLSFLRTALGTQQAPSNQIILA 103 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 L+LF+TF++M+P + QP +++ A ++ +P FM + TREKDL LF+ Sbjct: 104 LSLFLTFFIMTPVWQQVNRDAYQPYKAGTLSQEQAFEKAVQPVRKFMLSQTREKDLGLFV 163 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 ++ + D I ++P+FMISELR +F+IGFLI +PF+++DM+VA+++M+M Sbjct: 164 SLSKQARPK----NADDIPTLTIVPAFMISELRTAFQIGFLIYIPFIVVDMVVASVLMSM 219 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMMLPP ISLPFK++ FVL+DGW L++ +LVKSF Sbjct: 220 GMMMLPPVMISLPFKILLFVLVDGWGLVISSLVKSF 255 >gi|326791526|ref|YP_004309347.1| flagellar biosynthetic protein FliP [Clostridium lentocellum DSM 5427] gi|326542290|gb|ADZ84149.1| flagellar biosynthetic protein FliP [Clostridium lentocellum DSM 5427] Length = 261 Score = 197 bits (500), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 96/201 (47%), Positives = 138/201 (68%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 I TI+S+AP +LIM+T F R II +R+ +G ++PPN +++ LALF+TF+VMSP Sbjct: 60 IITIISLAPSILIMMTSFLRIIIALHFVRSAIGTQTMPPNQILVGLALFLTFFVMSPVFM 119 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + I PL QIT+ AI+R +P FM TR++D++LFMD+AH D Sbjct: 120 QIKTNAIDPLEKQQITQEQAIERGIQPLKEFMLKQTRDEDITLFMDLAHLEPYTEDTDLV 179 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + ++IP+F+ISELR F IGFL+ +PF+IIDM+VA +M+MGMMMLPP ISLPFK Sbjct: 180 KEMPLHVIIPAFIISELRAGFIIGFLVYIPFIIIDMVVAATLMSMGMMMLPPAMISLPFK 239 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 V+ F+L+DGW+L + L+++F Sbjct: 240 VLLFILVDGWNLFIGQLIQTF 260 >gi|157161419|ref|YP_001458737.1| flagellar biosynthesis protein FliP [Escherichia coli HS] gi|157067099|gb|ABV06354.1| flagellar biosynthetic protein FliP [Escherichia coli HS] Length = 245 Score = 197 bits (500), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 104/239 (43%), Positives = 158/239 (66%), Gaps = 9/239 (3%) Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66 L+LVTP L FA+ L + + P +W V+T T L+ P +L+M+T F R I Sbjct: 12 LWLVTP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A++ Sbjct: 69 IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 + A+P FM TRE DL LF +A++ + + + RIL+P+++ISEL+ +F+ Sbjct: 129 KGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVISELKTAFQ 184 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243 >gi|239817147|ref|YP_002946057.1| flagellar biosynthetic protein FliP [Variovorax paradoxus S110] gi|239803724|gb|ACS20791.1| flagellar biosynthetic protein FliP [Variovorax paradoxus S110] Length = 253 Score = 196 bits (499), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 99/227 (43%), Positives = 147/227 (64%), Gaps = 6/227 (2%) Query: 21 SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 L + + P TW V+T + T LS P LL+ +T F R +IV +LRT +G Sbjct: 29 QGLPGLTSTPGPGGSQTWSLSVQTLVMLTSLSFLPALLLSMTSFTRILIVLGLLRTAIGT 88 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 S PPN +++ L+LF+TF+VM+P D+ + +P N+IT A+++ PF FM Sbjct: 89 QSSPPNQILVGLSLFLTFFVMAPVFDKVHDEAYKPFSENKITAEKALEKGIAPFKSFMLK 148 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 TRE DL+LF +A + D+ + + RIL+PSF+ISEL+ +F+IGF I +PFLII Sbjct: 149 QTRENDLALFARLA----KIPDMQGPEEVPLRILLPSFVISELKTAFQIGFTIFIPFLII 204 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 D++VA+++M+MGMMM+PP SI+LPFK++ FV+ DGW LL+ L +SF Sbjct: 205 DLVVASVLMSMGMMMVPPASIALPFKLMLFVMADGWQLLIGALAQSF 251 >gi|21672367|ref|NP_660434.1| type III secretion system protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008468|sp|Q8KA37|FLIP_BUCAP RecName: Full=Flagellar biosynthetic protein fliP gi|21622972|gb|AAM67645.1| flagellar biosynthetic protein FliP [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 379 Score = 196 bits (499), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 103/213 (48%), Positives = 142/213 (66%), Gaps = 8/213 (3%) Query: 36 STWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 TW V+T T L+ P L+M+T F R IIVF +LR +G PPN +++ LALF Sbjct: 170 QTWSLPVQTLIFLTSLTFLPAFLLMMTSFTRIIIVFGLLRNALGTPYAPPNQILLGLALF 229 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 +TF++MSPT D+ + P +I AI + A P FM N TR DL LF +AH Sbjct: 230 LTFFIMSPTFDQVYKEAYLPFSQEKINMDEAIIKGAVPLKKFMLNQTRNSDLELFSKLAH 289 Query: 154 -SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 SS++N D I RIL+PSF+ SEL+ +F+IGF I +PFLIID++VA+++MA+GMM Sbjct: 290 ISSYKN-----KDEIPMRILLPSFITSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMM 344 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+PP++ISLPFK++ FVL+DGW LLV +L +SF Sbjct: 345 MVPPSTISLPFKLMLFVLVDGWQLLVTSLSQSF 377 >gi|304404260|ref|ZP_07385922.1| flagellar biosynthetic protein FliP [Paenibacillus curdlanolyticus YK9] gi|304347238|gb|EFM13070.1| flagellar biosynthetic protein FliP [Paenibacillus curdlanolyticus YK9] Length = 256 Score = 196 bits (499), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 95/202 (47%), Positives = 145/202 (71%), Gaps = 6/202 (2%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T+LS+AP +L+++T F R +IV +RT +G +PPN V+I LA+F+TF+VM+PTL Sbjct: 57 LLTVLSVAPAILVLMTSFTRIVIVLGFVRTSLGTQQMPPNQVLIGLAMFLTFFVMAPTLS 116 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + ++ +QP + +IT+ A + A P FM + TREKDL LFM + T+ K+ Sbjct: 117 QVNQVALQPYLKGEITQMQAFDKAAVPMKKFMFSQTREKDLLLFMK-----YTKTEKPKS 171 Query: 165 -DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 + I +L+P++ ISEL+ +F++GF+I +PFLIIDM+V++ +MAMGMMMLPP ISLPF Sbjct: 172 YEDIPITVLVPAYAISELKTAFQMGFMIFIPFLIIDMVVSSTLMAMGMMMLPPVMISLPF 231 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K++ FVL+DGW L+V++L+ SF Sbjct: 232 KILLFVLVDGWYLIVKSLLISF 253 >gi|323527702|ref|YP_004229855.1| flagellar biosynthetic protein FliP [Burkholderia sp. CCGE1001] gi|323384704|gb|ADX56795.1| flagellar biosynthetic protein FliP [Burkholderia sp. CCGE1001] Length = 277 Score = 196 bits (499), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 100/236 (42%), Positives = 152/236 (64%), Gaps = 7/236 (2%) Query: 14 PELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70 P L FA+++ N P + + V+T + T+LS P +++M+T F R IIV S Sbjct: 46 PSLSFAQTAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTRIIIVLS 105 Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130 +LR +G + PPN V++ LALF+T +VMSP LD++ G +P + TA+ R Sbjct: 106 LLRQALGTTTTPPNQVLVGLALFLTLFVMSPVLDKAYTDGYKPFSEGTVPMETAVSRGLA 165 Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190 PF FM TRE DL+LF ++H++ + + + +L+PSF+ SEL+ F+IGF Sbjct: 166 PFKTFMLRQTRESDLALFARISHAA----PMQGPEDVPLSLLVPSFVTSELKTGFQIGFT 221 Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 I +PFLIIDM+VA+++M+MGMMM+ P +ISLPFK++ FVL+DGW LL+ +L +SF+ Sbjct: 222 IFIPFLIIDMVVASVLMSMGMMMVSPATISLPFKLMLFVLVDGWQLLLGSLAQSFV 277 >gi|254418891|ref|ZP_05032615.1| flagellar biosynthetic protein FliP [Brevundimonas sp. BAL3] gi|196185068|gb|EDX80044.1| flagellar biosynthetic protein FliP [Brevundimonas sp. BAL3] Length = 266 Score = 196 bits (498), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 95/219 (43%), Positives = 149/219 (68%), Gaps = 4/219 (1%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 +++ + ++ +V+ G+ T+LS+AP ++IM T F R ++V S+LRT +GM PPN V Sbjct: 45 IDLGSGAGLTQRVVQLVGLMTVLSLAPSIVIMTTSFVRIVVVLSLLRTALGMQQSPPNAV 104 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 ++SLALF++ VM+PT + + GI+PL++ Q+ A +EP FM DL+ Sbjct: 105 LVSLALFLSAIVMAPTWQDAYDSGIRPLLDQQMELPQAFDAASEPVKTFMLAQVDRGDLA 164 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 LF ++ R + R++ P+FMISEL+++FEIGFL+ +PFL+ID++VA+++ Sbjct: 165 LFTRLS----RVEAPANLQELPLRVVTPAFMISELKKAFEIGFLLFVPFLVIDLVVASVL 220 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+MGMMMLPP +SLPFK+IFFVL+DGW L+ +LV+SF Sbjct: 221 MSMGMMMLPPVVVSLPFKLIFFVLVDGWRLVAGSLVESF 259 >gi|148261126|ref|YP_001235253.1| flagellar biosynthesis protein FliP [Acidiphilium cryptum JF-5] gi|326404527|ref|YP_004284609.1| flagellar biosynthetic protein FliP [Acidiphilium multivorum AIU301] gi|146402807|gb|ABQ31334.1| flagellar biosynthetic protein FliP [Acidiphilium cryptum JF-5] gi|325051389|dbj|BAJ81727.1| flagellar biosynthetic protein FliP [Acidiphilium multivorum AIU301] Length = 253 Score = 196 bits (498), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 89/207 (42%), Positives = 142/207 (68%), Gaps = 4/207 (1%) Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98 +++ + ++S+AP LL+M+T F R +IV S+LRT +G + PPN V+I LALF+T++V Sbjct: 46 LIQLIALIGVISLAPSLLVMLTAFTRIVIVLSLLRTALGTQTTPPNSVLIGLALFLTYFV 105 Query: 99 MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 M+P +S G+ P+ + ++ A PF F+ +N R D+ +F+ +AH Sbjct: 106 MAPVFSQSWHTGLLPMTQGDVGTLEGLKLAAAPFHTFLADNARPADVRVFLSLAHIKPP- 164 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 + +R LIP F++ ELRR FE+GF+I LPF++ID+++++I+M++GMMMLPPT+ Sbjct: 165 ---ANMQDVPWRALIPGFVVGELRRGFEMGFMIFLPFMVIDIVISSILMSLGMMMLPPTA 221 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 +SLPFK+IFFVL+DGW L+ +LV+SF Sbjct: 222 VSLPFKIIFFVLVDGWQLVCGSLVRSF 248 >gi|156933432|ref|YP_001437348.1| flagellar biosynthesis protein FliP [Cronobacter sakazakii ATCC BAA-894] gi|156531686|gb|ABU76512.1| hypothetical protein ESA_01250 [Cronobacter sakazakii ATCC BAA-894] Length = 245 Score = 196 bits (498), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 96/206 (46%), Positives = 142/206 (68%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T T L+ P +L+M+T F R IIVF +LR +G S PPN V++ LALF+TF++M Sbjct: 42 VQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIM 101 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP +D+ QP N+I+ A+ R A+P FM TRE DL+LF +A++ Sbjct: 102 SPVIDKIYSDAYQPFNENKISMEVALDRGAQPLREFMLRQTREADLALFAKLANTQ---- 157 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 I + + RIL+P+++ SEL+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP SI Sbjct: 158 PIQGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASI 217 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 +LPFK++ FVL+DGW LLV +L +SF Sbjct: 218 ALPFKLMLFVLVDGWQLLVGSLAQSF 243 >gi|291276476|ref|YP_003516248.1| flagellar biosynthesis protein [Helicobacter mustelae 12198] gi|290963670|emb|CBG39502.1| flagellar biosynthesis protein [Helicobacter mustelae 12198] Length = 247 Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 97/201 (48%), Positives = 142/201 (70%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T+L +AP L++++T F R +IVFS LRT +G PP +++SLA+ +TF++M P + Sbjct: 50 VLTLLVLAPSLVLVMTSFTRLVIVFSFLRTALGTQQSPPTQILVSLAMVLTFFIMEPVVR 109 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 S + I P ++ +I+ TA R +PF FM NTREKDL+LF + + T + Sbjct: 110 ESYQKAIVPYLDAKISYETAFDRGVQPFKDFMLKNTREKDLALFYRIRKLENPKT----S 165 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + LIP+FMISEL+ +F+IGFL+ LPFL+IDM+V++I+MAMGMMMLPP ISLPFK Sbjct: 166 ADVSLTTLIPAFMISELKTAFQIGFLLYLPFLVIDMVVSSILMAMGMMMLPPVMISLPFK 225 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DG++LL+ NLV+SF Sbjct: 226 ILIFVLVDGFNLLIGNLVESF 246 >gi|187478200|ref|YP_786224.1| flagellar biosynthesis protein FliP [Bordetella avium 197N] gi|115422786|emb|CAJ49314.1| flagellar biosynthetic protein [Bordetella avium 197N] Length = 255 Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 103/236 (43%), Positives = 148/236 (62%), Gaps = 6/236 (2%) Query: 12 VTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVF 69 V P A+++L + P T+ + +T + T LS P L+M+T F R IIV Sbjct: 22 VMPSGAIAQATLPALTTTPGVNGSQTYSLSMQTLLLMTSLSFLPAALLMMTGFTRIIIVL 81 Query: 70 SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129 +LR+ MG PPN V++ +ALF+TFY MSP D+ QPL I TA++R Sbjct: 82 GLLRSAMGTAMSPPNHVLVGIALFLTFYTMSPVFDKIYTEAYQPLSTGSIPFETALERAG 141 Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189 P FM + TRE DL+LF ++A+ I + RILIP+F+ SEL+ +F+IGF Sbjct: 142 APLHTFMLHQTRENDLALFANLANIP----KIEDPSKVPMRILIPAFITSELKTAFQIGF 197 Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 I +PFLIID++VA+++MA+GMMM+PP ++SLPFK++ FVL DGW+LL+ +L KSF Sbjct: 198 TIFIPFLIIDLVVASVLMALGMMMVPPVTVSLPFKLMLFVLADGWNLLLGSLAKSF 253 >gi|294636880|ref|ZP_06715210.1| flagellar biosynthetic protein FliP [Edwardsiella tarda ATCC 23685] gi|291089910|gb|EFE22471.1| flagellar biosynthetic protein FliP [Edwardsiella tarda ATCC 23685] Length = 246 Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 94/206 (45%), Positives = 142/206 (68%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T T LS P +L+++T F R IIV +LR +G S PPN V++ LALF+TF++M Sbjct: 43 VQTLVFLTSLSFLPAVLLLMTSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFIM 102 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP LD+ + QP +I+ TA++R A+P FM TRE DL+LF +A + Sbjct: 103 SPVLDKIYQDAYQPFSEQKISMETALERGAKPLRAFMLRQTRETDLALFARLA----KQP 158 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + RIL+P+++ SEL+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP +I Sbjct: 159 QMQGPEDVPLRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATI 218 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 219 SLPFKLMLFVLVDGWQLLLGSLAQSF 244 >gi|223040127|ref|ZP_03610407.1| flagellar biosynthetic protein FliP [Campylobacter rectus RM3267] gi|222878604|gb|EEF13705.1| flagellar biosynthetic protein FliP [Campylobacter rectus RM3267] Length = 246 Score = 196 bits (497), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 100/195 (51%), Positives = 140/195 (71%), Gaps = 6/195 (3%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP L+ M+T F R IIVFS LR MG +PP+ V+ISLA+ +TF++M P ++ E G+ Sbjct: 56 APSLVFMMTSFLRLIIVFSFLRQAMGTQQMPPSTVLISLAMVLTFFIMEPVGKQAYEAGV 115 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYR 170 +P + QI A +R +PF FM NTREKDL+LF+ + RN ++ D I Sbjct: 116 RPYLGEQIGYQEAFERGVKPFREFMIKNTREKDLALFLRI-----RNMPNPQSFDDIPLT 170 Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230 +++ +FMISE++ +FEI FL+ LPFL+IDM+V++++MAMGMMMLPPT ISLPFK++ F+L Sbjct: 171 VVMSAFMISEMKTAFEIAFLLYLPFLVIDMVVSSVLMAMGMMMLPPTMISLPFKLLIFIL 230 Query: 231 IDGWSLLVENLVKSF 245 +DGW+LLV NLVKSF Sbjct: 231 VDGWNLLVMNLVKSF 245 >gi|291536019|emb|CBL09131.1| flagellar biosynthetic protein FliP [Roseburia intestinalis M50/1] gi|291538511|emb|CBL11622.1| flagellar biosynthetic protein FliP [Roseburia intestinalis XB6B4] Length = 299 Score = 196 bits (497), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 97/217 (44%), Positives = 145/217 (66%), Gaps = 11/217 (5%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 VR + TI++++P LLIM+T + R +IV LRT +G + PPN ++I LALF+TF++M Sbjct: 82 VRALLLLTIIAVSPSLLIMLTSYTRIVIVLHFLRTAIGTQTAPPNQILIGLALFLTFFIM 141 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH--- 156 PT + E IQPL N IT A++ P FM + KD+ LF+DMA S+ Sbjct: 142 WPTFQQINENAIQPLDNGDITIEEALKEAEVPIRQFMYGQVQRKDVKLFVDMAGDSYDID 201 Query: 157 --------RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208 + + D I I+IPSF+I ELR++F +GF+I +PF++IDM+VA+++M+ Sbjct: 202 SAALEKEYEESGQSAYDAIPMTIMIPSFIIGELRQAFIMGFVIYIPFIVIDMVVASVLMS 261 Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MGMMMLPPT+ISLPFK++ F+L DGW+L++ ++VK+F Sbjct: 262 MGMMMLPPTTISLPFKILLFILADGWNLVIGSVVKTF 298 >gi|240145488|ref|ZP_04744089.1| flagellar biosynthetic protein FliP [Roseburia intestinalis L1-82] gi|257202303|gb|EEV00588.1| flagellar biosynthetic protein FliP [Roseburia intestinalis L1-82] Length = 299 Score = 196 bits (497), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 97/217 (44%), Positives = 145/217 (66%), Gaps = 11/217 (5%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 VR + TI++++P LLIM+T + R +IV LRT +G + PPN ++I LALF+TF++M Sbjct: 82 VRALLLLTIIAVSPSLLIMLTSYTRIVIVLHFLRTAIGTQTAPPNQILIGLALFLTFFIM 141 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH--- 156 PT + E IQPL N IT A++ P FM + KD+ LF+DMA S+ Sbjct: 142 WPTFQQINENAIQPLDNGDITIEEALKEAEVPIRQFMYGQVQRKDVKLFVDMAGDSYDID 201 Query: 157 --------RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208 + + D I I+IPSF+I ELR++F +GF+I +PF++IDM+VA+++M+ Sbjct: 202 SAALEKEYEESGQSAYDAIPMTIMIPSFVIGELRQAFIMGFVIYIPFIVIDMVVASVLMS 261 Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MGMMMLPPT+ISLPFK++ F+L DGW+L++ ++VK+F Sbjct: 262 MGMMMLPPTTISLPFKILLFILADGWNLVIGSVVKTF 298 >gi|300113613|ref|YP_003760188.1| flagellar biosynthetic protein FliP [Nitrosococcus watsonii C-113] gi|299539550|gb|ADJ27867.1| flagellar biosynthetic protein FliP [Nitrosococcus watsonii C-113] Length = 262 Score = 196 bits (497), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 94/206 (45%), Positives = 144/206 (69%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ G+ T+L++ P ++++T F R I+VFSILR +G+ P + ++I LALF+TF++M Sbjct: 57 LQILGLMTVLTLLPAAVMVMTSFTRIIVVFSILRQALGLAQTPSSQILIGLALFLTFFIM 116 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP LD++ + G++P +I+ A+ RV EPF FM TRE DL LF ++ S R Sbjct: 117 SPVLDKAYQEGVKPYFQEEISVADALARVREPFHHFMIAQTRETDLKLFAEI---SGREA 173 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + +L+P+F+ SEL+ +F+IGFL+ +PFLIID++VA+++MAMGMMML P + Sbjct: 174 -FESPEQVPFSLLVPAFITSELKTAFQIGFLLFIPFLIIDLVVASVLMAMGMMMLSPMLV 232 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVLIDGWSLL+ L SF Sbjct: 233 SLPFKLLLFVLIDGWSLLMGTLASSF 258 >gi|311105950|ref|YP_003978803.1| flagellar biosynthetic protein FliP [Achromobacter xylosoxidans A8] gi|310760639|gb|ADP16088.1| flagellar biosynthetic protein FliP [Achromobacter xylosoxidans A8] Length = 263 Score = 196 bits (497), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 101/234 (43%), Positives = 148/234 (63%), Gaps = 6/234 (2%) Query: 14 PELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71 P V A+++L + P T+ + +T + T LS P L+M+T F R IIV + Sbjct: 32 PAGVVAQATLPALTATPGPNGSETYSLSMQTLLLMTSLSFLPAALLMMTGFTRIIIVLGL 91 Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131 LR+ MG PPN V+I LALF+TFY MSP D+ +PL I A++R A P Sbjct: 92 LRSAMGTAMSPPNHVLIGLALFLTFYTMSPVFDKIYTDAYKPLSEGSIQFEAAVERAAGP 151 Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191 FM + TRE DLSLF ++A + + + RIL+P+F+ SEL+ +F+IGF I Sbjct: 152 LRTFMLHQTRENDLSLFANLA----KQPALEDPSQVPLRILVPAFITSELKTAFQIGFTI 207 Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PFLIID++VA+++MA+GMMM+PP +++LPFK++ FVL DGW+LL+ +L +SF Sbjct: 208 FIPFLIIDLVVASVLMALGMMMVPPVTVALPFKLMLFVLADGWNLLMGSLAQSF 261 >gi|302389676|ref|YP_003825497.1| flagellar biosynthetic protein FliP [Thermosediminibacter oceani DSM 16646] gi|302200304|gb|ADL07874.1| flagellar biosynthetic protein FliP [Thermosediminibacter oceani DSM 16646] Length = 254 Score = 196 bits (497), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 99/194 (51%), Positives = 141/194 (72%), Gaps = 3/194 (1%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +LIM+T F R +IVFS +R+G+G +PPN V+I LALF+TF+VM+P D + I Sbjct: 63 APSILIMMTSFIRIVIVFSFVRSGLGTQQIPPNQVLIGLALFITFFVMAPVFDDINKNAI 122 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 QP M +IT A+Q +P FM TREKDL+LF+ H+ +N T +D Y + Sbjct: 123 QPYMREEITTQEALQLAQKPLRDFMFRQTREKDLALFL--YHAKLQNQVRTLDDVPTY-V 179 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 LIP+F+ISEL+ +F++GF+I +PFL+IDMIVA+ +M+MGM+MLPP ISLPFK++ FV++ Sbjct: 180 LIPAFIISELKTAFQMGFIIFVPFLVIDMIVASTLMSMGMLMLPPVMISLPFKILLFVMV 239 Query: 232 DGWSLLVENLVKSF 245 DGW+L+V +L+ SF Sbjct: 240 DGWNLVVSSLLSSF 253 >gi|85706151|ref|ZP_01037246.1| flagellar biosynthetic protein FliP [Roseovarius sp. 217] gi|85669315|gb|EAQ24181.1| flagellar biosynthetic protein FliP [Roseovarius sp. 217] Length = 245 Score = 195 bits (496), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 97/220 (44%), Positives = 143/220 (65%), Gaps = 3/220 (1%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 ++I D S+S ++ + T+LS+AP + IMVTCFP + V SILR G+G+ PPN++ Sbjct: 29 LSIGDDASLSARTIQIIALITVLSLAPGIAIMVTCFPFIVTVLSILRQGIGLQQSPPNML 88 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 I+SLALF+T++VM P + GI+PL+ +++ A + V PF FM D Sbjct: 89 IVSLALFLTYFVMEPVFTEAWTNGIEPLLEERLSPERATEMVIAPFRQFMLGRV---DPE 145 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 F MA + +LIPSFM+SE+ R+F+IGFL+ LPFL+ID++VA I+ Sbjct: 146 TFASMAALRPEASVTVAGSDAPLSVLIPSFMLSEIARAFQIGFLVFLPFLVIDLVVAAIL 205 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 M+MGMMM+PP +SLPFK+ FFV+ DGW+L+ E+LVK ++ Sbjct: 206 MSMGMMMVPPAIVSLPFKLAFFVIADGWTLIAESLVKGYM 245 >gi|225850263|ref|YP_002730497.1| flagellar biosynthetic protein FliP [Persephonella marina EX-H1] gi|225646564|gb|ACO04750.1| flagellar biosynthetic protein FliP [Persephonella marina EX-H1] Length = 222 Score = 195 bits (496), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 101/199 (50%), Positives = 138/199 (69%), Gaps = 5/199 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 TILS+AP +LI VT F R +IV S+LR +G+ PPN VII+ +LF+TF+VM P D Sbjct: 28 TILSLAPSILITVTAFVRIVIVLSLLRHALGIPQSPPNQVIIAFSLFLTFFVMKPVFDDI 87 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 IQP + +I + AI+R EP FM NTR++DL LF+D+A ++ D Sbjct: 88 NGNAIQPYLKKEIGDMEAIERAKEPVKKFMLKNTRKEDLKLFLDIAGEKPKSP-----DE 142 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 + LIP+FMISE++ +FEI F+I LPFLIIDM+VA+I+M+MGMMM+PP ISLPFK+I Sbjct: 143 VSMVSLIPAFMISEIKTAFEIVFIIFLPFLIIDMLVASILMSMGMMMIPPMLISLPFKLI 202 Query: 227 FFVLIDGWSLLVENLVKSF 245 FVL DG+ LL + L++S+ Sbjct: 203 LFVLADGFELLTKALIQSY 221 >gi|295098284|emb|CBK87374.1| flagellar biosynthetic protein FliP [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 245 Score = 195 bits (496), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 95/227 (41%), Positives = 152/227 (66%), Gaps = 6/227 (2%) Query: 21 SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 + L +++ P +W V+T T L+ P +L+M+T F R IIVF +LR +G Sbjct: 21 AQLPGLVSTPLANGGQSWSLSVQTLVFITSLTFIPAILLMMTSFTRIIIVFGLLRNALGT 80 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 S PPN V++ LALF+TF++MSP +D+ QP ++I+ A+++ A+P FM Sbjct: 81 PSAPPNQVLLGLALFLTFFIMSPVIDKIYTEAYQPFSEDKISMQVALEKGAQPLREFMLR 140 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 TRE DL+LF +A++ ++ + + RIL+P+++ SEL+ +F+IGF I +PFLII Sbjct: 141 QTREADLALFARLANTG----ELQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLII 196 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 D+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 197 DLVIASVLMALGMMMVPPATIALPFKIMLFVLVDGWQLLVSSLAQSF 243 >gi|225375339|ref|ZP_03752560.1| hypothetical protein ROSEINA2194_00964 [Roseburia inulinivorans DSM 16841] gi|225212828|gb|EEG95182.1| hypothetical protein ROSEINA2194_00964 [Roseburia inulinivorans DSM 16841] Length = 273 Score = 195 bits (496), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 98/206 (47%), Positives = 142/206 (68%), Gaps = 5/206 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+ + TILS+AP +LIM+T + R IIV LRT +G + PPN V+I+LALF+TF++M Sbjct: 72 VKMLLVLTILSLAPSILIMLTSYTRIIIVLHFLRTAIGTQTAPPNQVLIALALFLTFFIM 131 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 PT + IQPL +IT A P FM T+EKDL LF+D++ ++ + Sbjct: 132 WPTFQQINTEAIQPLDKGEITTEEAFTVAQGPIREFMYGQTQEKDLKLFVDISDETYDS- 190 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 D + LIP+F++SELR +F IGF+I +PF++IDM+VA+++M+MGMMMLPPT+I Sbjct: 191 ----YDDVPMTTLIPAFILSELRAAFIIGFVIYIPFIVIDMVVASVLMSMGMMMLPPTTI 246 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ F+L DGW L++ +LVK+F Sbjct: 247 SLPFKILLFILADGWDLVIGSLVKTF 272 >gi|261340413|ref|ZP_05968271.1| flagellar biosynthetic protein FliP [Enterobacter cancerogenus ATCC 35316] gi|288317505|gb|EFC56443.1| flagellar biosynthetic protein FliP [Enterobacter cancerogenus ATCC 35316] Length = 245 Score = 195 bits (496), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 95/227 (41%), Positives = 152/227 (66%), Gaps = 6/227 (2%) Query: 21 SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 + L +++ P +W V+T T L+ P +L+M+T F R IIVF +LR +G Sbjct: 21 AQLPGLISTPMAGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIIIVFGLLRNALGT 80 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 S PPN V++ LALF+TF++MSP +D+ QP ++I+ A+++ A+P FM Sbjct: 81 PSAPPNQVLLGLALFLTFFIMSPVIDKIYTDAYQPFSEDKISMEVALEKGAQPLREFMLR 140 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 TRE DL+LF +A++ ++ + + RIL+P+++ SEL+ +F+IGF I +PFLII Sbjct: 141 QTREADLALFARLANTG----ELQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLII 196 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 D+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 197 DLVIASVLMALGMMMVPPATIALPFKIMLFVLVDGWQLLVSSLAQSF 243 >gi|170759449|ref|YP_001787969.1| flagellar biosynthesis protein FliP [Clostridium botulinum A3 str. Loch Maree] gi|169406438|gb|ACA54849.1| flagellar biosynthetic protein FliP [Clostridium botulinum A3 str. Loch Maree] Length = 258 Score = 195 bits (496), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 97/199 (48%), Positives = 140/199 (70%), Gaps = 4/199 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T+L++ P ++M+T F R I+VF LR MG PPN V+I LALF+T ++M P Sbjct: 63 TVLTLLPSFIVMMTSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEI 122 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 IQP M N+IT+ A++ A+P FM TR+KDL LF+D+A N +TK++ Sbjct: 123 NTKAIQPYMKNKITQEQAVETGAKPLRQFMLKQTRQKDLKLFVDLAKP---NFKVTKDNA 179 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 Y I++P+F+ISEL+ +F+IGFL+ +PFLIID++VA+++M+MGM MLPP ISLPFK++ Sbjct: 180 PLY-IVVPAFIISELKTAFQIGFLLFIPFLIIDLVVASVLMSMGMFMLPPVMISLPFKLL 238 Query: 227 FFVLIDGWSLLVENLVKSF 245 FV++DGW LLV++LV SF Sbjct: 239 LFVMVDGWYLLVKSLVMSF 257 >gi|186477688|ref|YP_001859158.1| flagellar biosynthesis protein FliP [Burkholderia phymatum STM815] gi|184194147|gb|ACC72112.1| flagellar biosynthetic protein FliP [Burkholderia phymatum STM815] Length = 281 Score = 195 bits (496), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 100/242 (41%), Positives = 153/242 (63%), Gaps = 7/242 (2%) Query: 8 ALFLVTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64 AL L P L A+++ N P + + V+T + T+LS P +++M+T F R Sbjct: 44 ALMLAAPTLSHAQTAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTR 103 Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124 IIV S+LR +G + PPN V++ LALF+T +VMSP LD++ G +P I A Sbjct: 104 IIIVLSLLRQAIGAPTTPPNQVLVGLALFLTLFVMSPVLDKAYNDGYKPFSEGTIQMDEA 163 Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184 ++R PF FM TRE DL+LF ++H+ + + + +L+PSF+ SEL+ Sbjct: 164 VKRGVAPFKAFMLKQTRESDLALFARISHAP----PMQGPEDVPLSLLVPSFVTSELKTG 219 Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 F+IGF + +PF+IIDM+VA+++M+MGMMM+ P +ISLPFK++ FVL+DGW L+V +L +S Sbjct: 220 FQIGFTVFIPFVIIDMVVASVLMSMGMMMISPATISLPFKLMLFVLVDGWQLIVGSLAQS 279 Query: 245 FI 246 F+ Sbjct: 280 FV 281 >gi|238920321|ref|YP_002933836.1| flagellar biosynthetic protein FliP, [Edwardsiella ictaluri 93-146] gi|238869890|gb|ACR69601.1| flagellar biosynthetic protein FliP, putative [Edwardsiella ictaluri 93-146] Length = 246 Score = 195 bits (496), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 94/206 (45%), Positives = 141/206 (68%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T T LS P L+++T F R IIV +LR +G S PPN V++ LALF+TF++M Sbjct: 43 VQTLVFLTSLSFLPAALLLMTSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFIM 102 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP LD+ + QP +I+ TA+ R A+P FM TRE DL+LF +A + Sbjct: 103 SPVLDKIYQEAYQPFSEQKISMETALDRGAKPLRAFMLRQTRETDLALFSRLA----KQP 158 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 ++ + + RIL+P+++ SEL+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP +I Sbjct: 159 EMQGPEDVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATI 218 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 219 SLPFKLMLFVLVDGWQLLLGSLAQSF 244 >gi|78043022|ref|YP_359852.1| flagellar biosynthesis protein FliP [Carboxydothermus hydrogenoformans Z-2901] gi|77995137|gb|ABB14036.1| flagellar biosynthetic protein FliP [Carboxydothermus hydrogenoformans Z-2901] Length = 254 Score = 195 bits (496), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 91/193 (47%), Positives = 137/193 (70%), Gaps = 4/193 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P L+++T F R ++V S+LR MG PPN V+I LALF+T ++MSP +++ + IQ Sbjct: 65 PAFLLLMTSFTRIVVVLSLLRNAMGTQQAPPNQVLIGLALFLTIFIMSPVINKINQDAIQ 124 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P +NNQIT+ AI+ P FM TREKDL+LF+++A T D + + ++ Sbjct: 125 PYLNNQITQEQAIRAAEAPLKDFMLKQTREKDLALFIELAKLPRPQT----KDDVPFTVV 180 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 +P+F+ISEL+ +F++GF++ LPFLIIDM+VA+I+M+MGM M+PP ++LPFK++ FVL D Sbjct: 181 VPAFIISELKTAFQMGFMLFLPFLIIDMVVASILMSMGMFMIPPMLVALPFKLLLFVLAD 240 Query: 233 GWSLLVENLVKSF 245 GW L+V++LV SF Sbjct: 241 GWYLVVKSLVSSF 253 >gi|188492613|ref|ZP_02999883.1| flagellar biosynthetic protein FliP [Escherichia coli 53638] gi|188487812|gb|EDU62915.1| flagellar biosynthetic protein FliP [Escherichia coli 53638] Length = 245 Score = 195 bits (496), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 103/239 (43%), Positives = 157/239 (65%), Gaps = 9/239 (3%) Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66 L+LVTP L FA+ L + + P +W V+T T L+ P +L+M+T F R I Sbjct: 12 LWLVTP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A++ Sbjct: 69 IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVNAYQPFSEEKISMQEALE 128 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 + A+P FM TRE DL LF +A++ + + + RIL+P+++ SEL+ +F+ Sbjct: 129 KGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQ 184 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243 >gi|331663444|ref|ZP_08364354.1| flagellar biosynthetic protein FliP [Escherichia coli TA143] gi|331059243|gb|EGI31220.1| flagellar biosynthetic protein FliP [Escherichia coli TA143] Length = 249 Score = 195 bits (495), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 103/239 (43%), Positives = 157/239 (65%), Gaps = 9/239 (3%) Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66 L+LVTP L FA+ L + + P +W V+T T L+ P +L+M+T F R I Sbjct: 12 LWLVTP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A++ Sbjct: 69 IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 + A+P FM TRE DL LF +A++ + + + RIL+P+++ SEL+ +F+ Sbjct: 129 KGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQ 184 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243 >gi|330839520|ref|YP_004414100.1| flagellar biosynthetic protein FliP [Selenomonas sputigena ATCC 35185] gi|329747284|gb|AEC00641.1| flagellar biosynthetic protein FliP [Selenomonas sputigena ATCC 35185] Length = 252 Score = 195 bits (495), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 96/216 (44%), Positives = 144/216 (66%), Gaps = 7/216 (3%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P D++ S I+ + TILS+ P +L+M T F R ++V LR M +VPPN V+++ Sbjct: 43 PQDVATSLQIL---ALLTILSLVPSILVMTTSFVRIVVVIGFLRNAMSTQNVPPNQVVLA 99 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 L+LF+TFY+M P + + GIQP + QIT+ AI P FM TRE DL+LF+ Sbjct: 100 LSLFLTFYIMQPYWSEANQQGIQPYLAGQITQEQAIDNTLAPLREFMFRQTRESDLALFV 159 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 +++ + + + LIP+F+ISEL+ +F+IGF+I +PF++IDMIVA+ +M+M Sbjct: 160 NLSDAERPES----QADVSTATLIPAFVISELKTAFQIGFMIYIPFIVIDMIVASTLMSM 215 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMMLPP ISLPFK++ FV++DGW LL+++L+ SF Sbjct: 216 GMMMLPPVMISLPFKILLFVMVDGWHLLIKSLIMSF 251 >gi|260886649|ref|ZP_05897912.1| flagellar biosynthetic protein FliP [Selenomonas sputigena ATCC 35185] gi|260863792|gb|EEX78292.1| flagellar biosynthetic protein FliP [Selenomonas sputigena ATCC 35185] Length = 251 Score = 195 bits (495), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 96/216 (44%), Positives = 144/216 (66%), Gaps = 7/216 (3%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P D++ S I+ + TILS+ P +L+M T F R ++V LR M +VPPN V+++ Sbjct: 42 PQDVATSLQIL---ALLTILSLVPSILVMTTSFVRIVVVIGFLRNAMSTQNVPPNQVVLA 98 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 L+LF+TFY+M P + + GIQP + QIT+ AI P FM TRE DL+LF+ Sbjct: 99 LSLFLTFYIMQPYWSEANQQGIQPYLAGQITQEQAIDNTLAPLREFMFRQTRESDLALFV 158 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 +++ + + + LIP+F+ISEL+ +F+IGF+I +PF++IDMIVA+ +M+M Sbjct: 159 NLSDAERPES----QADVSTATLIPAFVISELKTAFQIGFMIYIPFIVIDMIVASTLMSM 214 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMMLPP ISLPFK++ FV++DGW LL+++L+ SF Sbjct: 215 GMMMLPPVMISLPFKILLFVMVDGWHLLIKSLIMSF 250 >gi|163856448|ref|YP_001630746.1| flagellar biosynthesis protein FliP [Bordetella petrii DSM 12804] gi|163260176|emb|CAP42478.1| flagellar biosynthesis protein FliP [Bordetella petrii] Length = 262 Score = 195 bits (495), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 100/234 (42%), Positives = 148/234 (63%), Gaps = 6/234 (2%) Query: 14 PELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71 P V A+++L + P T+ + +T + T LS P L+M+T F R IIV + Sbjct: 31 PAGVVAQATLPALTATPGPGGAQTYSLSMQTLLLMTSLSFLPAALLMMTGFTRIIIVLGL 90 Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131 LR+ +G PPN V+I LALF+TFY MSP DR +PL I TA++R A P Sbjct: 91 LRSALGTAMSPPNHVLIGLALFLTFYTMSPVFDRIYSEAYKPLSEGSIPFETAVERAAAP 150 Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191 FM + TRE DL+LF ++A+ + + +IL+P+F+ SEL+ +F+IGF I Sbjct: 151 LHTFMLHQTRENDLTLFANLAN----QPALEDPSQVPMKILVPAFITSELKTAFQIGFTI 206 Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PFLIID++VA+++MA+GMMM+PP +++LPFK++ FVL DGW+LL+ +L SF Sbjct: 207 FIPFLIIDLVVASVLMALGMMMVPPVTVALPFKLMLFVLADGWNLLLGSLASSF 260 >gi|225849157|ref|YP_002729321.1| flagellar biosynthetic protein FliP [Sulfurihydrogenibium azorense Az-Fu1] gi|225644291|gb|ACN99341.1| flagellar biosynthetic protein FliP [Sulfurihydrogenibium azorense Az-Fu1] Length = 239 Score = 195 bits (495), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 94/199 (47%), Positives = 140/199 (70%), Gaps = 5/199 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T+LSIAP +LI +T F R +IV S+LR +G+ + PPN VI+ LALF+TF++M P D+ Sbjct: 44 TVLSIAPAILISMTSFVRIVIVLSLLRHALGIPTAPPNQVIVGLALFLTFFIMKPVFDKI 103 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 E+ + P + QI++ AI+ +P FM NTR++DL LF+D++ + K + Sbjct: 104 NEVSLTPYLKKQISDVQAIENAKQPLKEFMLKNTRKEDLKLFIDISKEKPQ-----KLED 158 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 + LIP+FMISE++ +FEI F+I LPF++ID +VA+I+M+MGMMM+PP ISLPFK++ Sbjct: 159 VSMTTLIPAFMISEIKTAFEIVFIIYLPFIVIDFVVASILMSMGMMMVPPMFISLPFKLM 218 Query: 227 FFVLIDGWSLLVENLVKSF 245 FVL DGW LL + L++S+ Sbjct: 219 LFVLADGWELLTKALIQSY 237 >gi|56413108|ref|YP_150183.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362034|ref|YP_002141671.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127365|gb|AAV76871.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093511|emb|CAR58972.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 245 Score = 195 bits (495), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 100/240 (41%), Positives = 155/240 (64%), Gaps = 9/240 (3%) Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRF 65 L+L +P A + L +++ P +W V+T T L+ P +L+M+T F R Sbjct: 11 GLWLFSPA---AAAQLPGLISQPLAGGGQSWSLSVQTLVFITSLTFLPAILLMMTSFTRI 67 Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A+ Sbjct: 68 IIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQKISMQEAL 127 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185 + A+P FM TRE DL+LF +A+S + + + RIL+P+++ SEL+ +F Sbjct: 128 DKGAQPLCAFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSELKTAF 183 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 184 QIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243 >gi|323961992|gb|EGB57591.1| flagellar biosynthetic protein FliP [Escherichia coli H489] Length = 245 Score = 195 bits (495), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 101/237 (42%), Positives = 155/237 (65%), Gaps = 5/237 (2%) Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIV 68 L+LVTP L FA+ + +P + V+T T L+ P +L+M+T F R IIV Sbjct: 12 LWLVTP-LAFAQLPGINSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIIIV 70 Query: 69 FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128 F +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A+++ Sbjct: 71 FGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALEKG 130 Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188 A+P FM TRE DL LF +A++ + + + RIL+P+++ SEL+ +F+IG Sbjct: 131 AQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQIG 186 Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 F I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 187 FTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243 >gi|218689943|ref|YP_002398155.1| flagellar biosynthesis protein FliP [Escherichia coli ED1a] gi|300818632|ref|ZP_07098840.1| flagellar biosynthetic protein FliP [Escherichia coli MS 107-1] gi|218427507|emb|CAR08402.2| flagellar biosynthesis protein [Escherichia coli ED1a] gi|300528804|gb|EFK49866.1| flagellar biosynthetic protein FliP [Escherichia coli MS 107-1] Length = 245 Score = 195 bits (495), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 103/239 (43%), Positives = 157/239 (65%), Gaps = 9/239 (3%) Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66 L+LVTP L FA+ L + + P +W V+T T L+ P +L+M+T F R I Sbjct: 12 LWLVTP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A++ Sbjct: 69 IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 + A+P FM TRE DL LF +A++ + + + RIL+P+++ SEL+ +F+ Sbjct: 129 KGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQ 184 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243 >gi|254487121|ref|ZP_05100326.1| flagellar biosynthetic protein FliP [Roseobacter sp. GAI101] gi|214043990|gb|EEB84628.1| flagellar biosynthetic protein FliP [Roseobacter sp. GAI101] Length = 245 Score = 195 bits (495), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 96/212 (45%), Positives = 141/212 (66%), Gaps = 3/212 (1%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 ++S ++ F + T+LS+AP + +MVTCFP + V SILR +G+ PPN++I+SLALF Sbjct: 36 ALSARTIQLFVLITVLSLAPGIAVMVTCFPFLVTVLSILRQAIGLQQSPPNMLIVSLALF 95 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 +T+++M P + E G++PL N QI TA + EPF FM D + F MA Sbjct: 96 LTYFIMEPVFTAAWENGLEPLANEQIDVETAFAQAMEPFRQFMVGRL---DPATFTAMAE 152 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 + + +L+PSFM+SE+ R+F+IGFL+ LPFLIID++VA I+M+MGMMM Sbjct: 153 LRPDTAGLALDLDAPLSVLVPSFMLSEITRAFQIGFLVYLPFLIIDLVVAAILMSMGMMM 212 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PP +SLPFK+ FFV+ DGWSL+ +LV+S+ Sbjct: 213 VPPAVVSLPFKLAFFVVADGWSLIAGSLVRSY 244 >gi|296157442|ref|ZP_06840277.1| flagellar biosynthetic protein FliP [Burkholderia sp. Ch1-1] gi|295892214|gb|EFG71997.1| flagellar biosynthetic protein FliP [Burkholderia sp. Ch1-1] Length = 279 Score = 195 bits (495), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 100/234 (42%), Positives = 152/234 (64%), Gaps = 7/234 (2%) Query: 16 LVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72 L FA+++ N P + + V+T + T+LS P +++M+T F R IIV S+L Sbjct: 50 LSFAQAAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTRIIIVLSLL 109 Query: 73 RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132 R +G + PPN V++ LALF+T +VMSP LD++ G +P + I TA+ R PF Sbjct: 110 RQALGTTTTPPNQVLVGLALFLTLFVMSPVLDKAYTDGYKPFSDGSIPMETAVNRGLAPF 169 Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192 FM TRE DL+LF ++H++ + + + +L+PSF+ SEL+ F+IGF I Sbjct: 170 KTFMLRQTRESDLALFARISHAA----PMQGPEDVPLSLLVPSFVTSELKTGFQIGFTIF 225 Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +PFLIIDM+VA+++M+MGMMM+ P +ISLPFK++ FVL+DGW LL+ +L +SF+ Sbjct: 226 IPFLIIDMVVASVLMSMGMMMVSPATISLPFKLMLFVLVDGWQLLLGSLAQSFV 279 >gi|188997535|ref|YP_001931786.1| flagellar biosynthetic protein FliP [Sulfurihydrogenibium sp. YO3AOP1] gi|188932602|gb|ACD67232.1| flagellar biosynthetic protein FliP [Sulfurihydrogenibium sp. YO3AOP1] Length = 337 Score = 195 bits (495), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 102/196 (52%), Positives = 135/196 (68%), Gaps = 5/196 (2%) Query: 50 SIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEM 109 SIAP LLI VT F R +IV S+LR +G+ + PPN VI+ LALF+T +VM PT D+ E+ Sbjct: 146 SIAPALLISVTAFVRIVIVLSLLRHALGIPTAPPNQVIVGLALFLTIFVMKPTFDKINEV 205 Query: 110 GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169 I P + QI++ AI+ EP FM NTR++DL LF+D+A N I Sbjct: 206 SISPYLKKQISDIQAIENAKEPLKEFMLKNTRKEDLKLFLDLA-----NEKPLSPKDISI 260 Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229 LIP+FMISE++ +FEI F+I LPFL+ID IVA+I+M+MGMMM+PP ISLPFK++ FV Sbjct: 261 STLIPAFMISEIKTAFEIVFIIYLPFLVIDFIVASILMSMGMMMIPPMFISLPFKLMLFV 320 Query: 230 LIDGWSLLVENLVKSF 245 L DG+ LLV+ LV S+ Sbjct: 321 LADGFELLVKALVSSY 336 >gi|170019719|ref|YP_001724673.1| flagellar biosynthesis protein FliP [Escherichia coli ATCC 8739] gi|187730211|ref|YP_001879727.1| flagellar biosynthesis protein FliP [Shigella boydii CDC 3083-94] gi|209919370|ref|YP_002293454.1| flagellar biosynthesis protein FliP [Escherichia coli SE11] gi|218705441|ref|YP_002412960.1| flagellar biosynthesis protein FliP [Escherichia coli UMN026] gi|260855923|ref|YP_003229814.1| flagellar biosynthesis protein FliP [Escherichia coli O26:H11 str. 11368] gi|260868541|ref|YP_003234943.1| flagellar biosynthesis protein FliP [Escherichia coli O111:H- str. 11128] gi|293405431|ref|ZP_06649423.1| flagellar biosynthetic protein fliP [Escherichia coli FVEC1412] gi|298381075|ref|ZP_06990674.1| flagellar biosynthetic protein fliP [Escherichia coli FVEC1302] gi|300822282|ref|ZP_07102423.1| flagellar biosynthetic protein FliP [Escherichia coli MS 119-7] gi|300899205|ref|ZP_07117481.1| flagellar biosynthetic protein FliP [Escherichia coli MS 198-1] gi|300904838|ref|ZP_07122664.1| flagellar biosynthetic protein FliP [Escherichia coli MS 84-1] gi|300931161|ref|ZP_07146508.1| flagellar biosynthetic protein FliP [Escherichia coli MS 187-1] gi|300951573|ref|ZP_07165406.1| flagellar biosynthetic protein FliP [Escherichia coli MS 116-1] gi|300956536|ref|ZP_07168818.1| flagellar biosynthetic protein FliP [Escherichia coli MS 175-1] gi|301018202|ref|ZP_07182717.1| flagellar biosynthetic protein FliP [Escherichia coli MS 69-1] gi|301304257|ref|ZP_07210372.1| flagellar biosynthetic protein FliP [Escherichia coli MS 124-1] gi|301327735|ref|ZP_07220940.1| flagellar biosynthetic protein FliP [Escherichia coli MS 78-1] gi|301644593|ref|ZP_07244582.1| flagellar biosynthetic protein FliP [Escherichia coli MS 146-1] gi|307312466|ref|ZP_07592100.1| flagellar biosynthetic protein FliP [Escherichia coli W] gi|312967145|ref|ZP_07781363.1| flagellar biosynthetic protein FliP [Escherichia coli 2362-75] gi|331668639|ref|ZP_08369487.1| flagellar biosynthetic protein FliP [Escherichia coli TA271] gi|331673461|ref|ZP_08374229.1| flagellar biosynthetic protein FliP [Escherichia coli TA280] gi|169754647|gb|ACA77346.1| flagellar biosynthetic protein FliP [Escherichia coli ATCC 8739] gi|187427203|gb|ACD06477.1| flagellar biosynthetic protein FliP [Shigella boydii CDC 3083-94] gi|209912629|dbj|BAG77703.1| flagellar biosynthetic protein FliP [Escherichia coli SE11] gi|218432538|emb|CAR13431.1| flagellar biosynthesis protein [Escherichia coli UMN026] gi|257754572|dbj|BAI26074.1| flagellar biosynthesis protein FliP [Escherichia coli O26:H11 str. 11368] gi|257764897|dbj|BAI36392.1| flagellar biosynthesis protein FliP [Escherichia coli O111:H- str. 11128] gi|291427639|gb|EFF00666.1| flagellar biosynthetic protein fliP [Escherichia coli FVEC1412] gi|298278517|gb|EFI20031.1| flagellar biosynthetic protein fliP [Escherichia coli FVEC1302] gi|300316636|gb|EFJ66420.1| flagellar biosynthetic protein FliP [Escherichia coli MS 175-1] gi|300357186|gb|EFJ73056.1| flagellar biosynthetic protein FliP [Escherichia coli MS 198-1] gi|300399789|gb|EFJ83327.1| flagellar biosynthetic protein FliP [Escherichia coli MS 69-1] gi|300403265|gb|EFJ86803.1| flagellar biosynthetic protein FliP [Escherichia coli MS 84-1] gi|300449200|gb|EFK12820.1| flagellar biosynthetic protein FliP [Escherichia coli MS 116-1] gi|300461018|gb|EFK24511.1| flagellar biosynthetic protein FliP [Escherichia coli MS 187-1] gi|300525165|gb|EFK46234.1| flagellar biosynthetic protein FliP [Escherichia coli MS 119-7] gi|300840514|gb|EFK68274.1| flagellar biosynthetic protein FliP [Escherichia coli MS 124-1] gi|300845735|gb|EFK73495.1| flagellar biosynthetic protein FliP [Escherichia coli MS 78-1] gi|301077068|gb|EFK91874.1| flagellar biosynthetic protein FliP [Escherichia coli MS 146-1] gi|306907637|gb|EFN38140.1| flagellar biosynthetic protein FliP [Escherichia coli W] gi|309702237|emb|CBJ01554.1| flagellar biosynthetic protein FliP [Escherichia coli ETEC H10407] gi|312288609|gb|EFR16511.1| flagellar biosynthetic protein FliP [Escherichia coli 2362-75] gi|315061248|gb|ADT75575.1| flagellar biosynthesis protein [Escherichia coli W] gi|315257220|gb|EFU37188.1| flagellar biosynthetic protein FliP [Escherichia coli MS 85-1] gi|323152721|gb|EFZ38993.1| flagellar biosynthetic protein FliP [Escherichia coli EPECa14] gi|323180799|gb|EFZ66339.1| flagellar biosynthetic protein FliP [Escherichia coli 1180] gi|323378175|gb|ADX50443.1| flagellar biosynthetic protein FliP [Escherichia coli KO11] gi|323937218|gb|EGB33498.1| flagellar biosynthetic protein FliP [Escherichia coli E1520] gi|323940393|gb|EGB36584.1| flagellar biosynthetic protein FliP [Escherichia coli E482] gi|323968364|gb|EGB63771.1| flagellar biosynthetic protein FliP [Escherichia coli M863] gi|323977871|gb|EGB72957.1| flagellar biosynthetic protein FliP [Escherichia coli TW10509] gi|324118997|gb|EGC12886.1| flagellar biosynthetic protein FliP [Escherichia coli E1167] gi|327253080|gb|EGE64734.1| flagellar biosynthetic protein FliP [Escherichia coli STEC_7v] gi|331063833|gb|EGI35744.1| flagellar biosynthetic protein FliP [Escherichia coli TA271] gi|331069659|gb|EGI41046.1| flagellar biosynthetic protein FliP [Escherichia coli TA280] gi|332093095|gb|EGI98159.1| flagellar biosynthetic protein FliP [Shigella boydii 5216-82] Length = 245 Score = 195 bits (495), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 103/239 (43%), Positives = 157/239 (65%), Gaps = 9/239 (3%) Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66 L+LVTP L FA+ L + + P +W V+T T L+ P +L+M+T F R I Sbjct: 12 LWLVTP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A++ Sbjct: 69 IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 + A+P FM TRE DL LF +A++ + + + RIL+P+++ SEL+ +F+ Sbjct: 129 KGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQ 184 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243 >gi|269139497|ref|YP_003296198.1| flagellar biosynthesis pathway, component FliP [Edwardsiella tarda EIB202] gi|267985158|gb|ACY84987.1| flagellar biosynthesis pathway, component FliP [Edwardsiella tarda EIB202] gi|304559386|gb|ADM42050.1| Flagellar biosynthesis protein FliP [Edwardsiella tarda FL6-60] Length = 246 Score = 194 bits (494), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 94/206 (45%), Positives = 141/206 (68%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T T LS P L+++T F R IIV +LR +G S PPN V++ LALF+TF++M Sbjct: 43 VQTLVFLTSLSFLPAALLLMTSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFIM 102 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP LD+ + QP +I+ TA+ R A+P FM TRE DL+LF +A + Sbjct: 103 SPVLDKIYQDAYQPFSEQKISMETALDRGAKPLRAFMLRQTRETDLALFSRLA----KQP 158 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 ++ + + RIL+P+++ SEL+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP +I Sbjct: 159 EMQGPEDVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATI 218 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 219 SLPFKLMLFVLVDGWQLLLGSLAQSF 244 >gi|325525522|gb|EGD03321.1| flagellar biosynthesis protein FliP [Burkholderia sp. TJI49] Length = 229 Score = 194 bits (494), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 93/206 (45%), Positives = 142/206 (68%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T + T+LS P +++M+T F R IIV S+LR +G + PPN V++ LALF+TF+VM Sbjct: 27 VQTMLLLTMLSFLPAMVLMMTSFTRIIIVLSLLRQALGTATTPPNQVLVGLALFLTFFVM 86 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP LDR+ G +P + + A+QR PF FM TRE DL+LF ++ ++ Sbjct: 87 SPVLDRAYTDGYKPFSDGSVPMEQAVQRGLAPFKGFMLKQTRETDLALFAKISKAAP--- 143 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + +L+P+F+ SEL+ F+IGF I +PFLIIDM+VA+++M+MGMMM+ P+++ Sbjct: 144 -MQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPSTV 202 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 203 SLPFKLMLFVLVDGWQLLIGSLAQSF 228 >gi|302343742|ref|YP_003808271.1| flagellar biosynthetic protein FliP [Desulfarculus baarsii DSM 2075] gi|301640355|gb|ADK85677.1| flagellar biosynthetic protein FliP [Desulfarculus baarsii DSM 2075] Length = 258 Score = 194 bits (494), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 92/202 (45%), Positives = 142/202 (70%), Gaps = 6/202 (2%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T+L++AP +L+M T F R + FS+LR +G VPP +I+ L+LF+TF++M+P D Sbjct: 61 LLTVLTLAPAILVMTTSFVRIAVSFSLLRNALGAPQVPPTQIIVGLSLFLTFFIMAPVFD 120 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + + ++P ++ I+++ + A+P FM TR+KDL LFM +A D +N Sbjct: 121 QVHDKALKPYLDGAISQSAFFEEAAKPMREFMLKQTRKKDLGLFMKIA-----GEDRPRN 175 Query: 165 DH-IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 + + L+P+F+ISELR +FEIGFL+ +PFL+IDM+VA+++++MGMMMLPP ISLPF Sbjct: 176 EQDVTMSALVPAFVISELRTAFEIGFLLYVPFLVIDMVVASVLLSMGMMMLPPVMISLPF 235 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K++ FVL+DGW LLV +LV+SF Sbjct: 236 KLMLFVLVDGWYLLVGSLVRSF 257 >gi|16760923|ref|NP_456540.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141385|ref|NP_804727.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62180554|ref|YP_216971.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161502899|ref|YP_001570011.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|167552788|ref|ZP_02346539.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168234152|ref|ZP_02659210.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168239219|ref|ZP_02664277.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168462479|ref|ZP_02696410.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168823022|ref|ZP_02835022.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444637|ref|YP_002041244.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194468817|ref|ZP_03074801.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194737682|ref|YP_002115013.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197247593|ref|YP_002146044.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197264056|ref|ZP_03164130.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198244709|ref|YP_002215107.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200391063|ref|ZP_03217674.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204931035|ref|ZP_03221861.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|207856508|ref|YP_002243159.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213023112|ref|ZP_03337559.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213163376|ref|ZP_03349086.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213417182|ref|ZP_03350326.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213424995|ref|ZP_03357745.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213584779|ref|ZP_03366605.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213650743|ref|ZP_03380796.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855268|ref|ZP_03383508.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224583522|ref|YP_002637320.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|25316655|pir||AD0753 flagellar biosynthetic protein FliP [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503220|emb|CAD05727.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Typhi] gi|29137012|gb|AAO68576.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62128187|gb|AAX65890.1| flagellar biosynthesis [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|160864246|gb|ABX20869.1| hypothetical protein SARI_00958 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|194403300|gb|ACF63522.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194455181|gb|EDX44020.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194713184|gb|ACF92405.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195634044|gb|EDX52396.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197211296|gb|ACH48693.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197242311|gb|EDY24931.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197288073|gb|EDY27460.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197939225|gb|ACH76558.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603508|gb|EDZ02054.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320079|gb|EDZ05284.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205322623|gb|EDZ10462.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205331887|gb|EDZ18651.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205340666|gb|EDZ27430.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206708311|emb|CAR32614.1| flagellar biosynthetic protein flip precursor [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224468049|gb|ACN45879.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|320085402|emb|CBY95183.1| Flagellar biosynthetic protein fliP Flagellar biosynthetic protein mopC [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322715030|gb|EFZ06601.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|326622855|gb|EGE29200.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 245 Score = 194 bits (494), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 100/240 (41%), Positives = 155/240 (64%), Gaps = 9/240 (3%) Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRF 65 L+L +P A + L +++ P +W V+T T L+ P +L+M+T F R Sbjct: 11 GLWLFSPA---AAAQLPGLISQPLAGGGQSWSLSVQTLVFITSLTFLPAILLMMTSFTRI 67 Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A+ Sbjct: 68 IIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQKISMQEAL 127 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185 + A+P FM TRE DL+LF +A+S + + + RIL+P+++ SEL+ +F Sbjct: 128 DKGAQPLRAFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSELKTAF 183 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 184 QIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243 >gi|118443404|ref|YP_877989.1| flagellar biosynthesis protein FliP [Clostridium novyi NT] gi|118133860|gb|ABK60904.1| flagellar biosynthetic protein fliP [Clostridium novyi NT] Length = 257 Score = 194 bits (494), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 91/201 (45%), Positives = 144/201 (71%), Gaps = 3/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T++S+ P L+M+T F R I+V +R +G PPN +++ LALF+T ++M+PT Sbjct: 58 MLTVISLLPSFLVMMTSFTRIIVVLGFMRNALGTQQAPPNQILVGLALFLTIFIMTPTYK 117 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + I+P + N+IT+T A+ A+P FM TR+KDL LF+D++ + +N ITK Sbjct: 118 TINKEAIKPFLENKITQTEALNNAAKPMREFMLKQTRDKDLELFLDVSKTDKKN--ITK- 174 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 +++ ++IPSF+ISEL+ +F+IGFL+ +PFLIID++VA+++M+MGM MLPP ISLPFK Sbjct: 175 ENVPMYVVIPSFIISELKTAFKIGFLLFVPFLIIDIVVASVLMSMGMFMLPPVMISLPFK 234 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FV++DGW LLV++LV + Sbjct: 235 LLLFVMVDGWYLLVKSLVMGY 255 >gi|325497690|gb|EGC95549.1| flagellar biosynthesis protein FliP [Escherichia fergusonii ECD227] Length = 245 Score = 194 bits (494), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 102/239 (42%), Positives = 156/239 (65%), Gaps = 9/239 (3%) Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66 L+LVTP A + L ++ P +W V+T T L+ P +L+M+T F R I Sbjct: 12 LWLVTP---CALAQLPGLVTQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A++ Sbjct: 69 IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 + A+P FM TRE DL+LF +A++ I + + RIL+P+++ SEL+ +F+ Sbjct: 129 KGAQPLREFMLRQTREADLALFARLANTG----PIQGPEAVPMRILLPAYVTSELKTAFQ 184 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243 >gi|322378387|ref|ZP_08052842.1| flagellar biosynthesis protein FliP [Helicobacter suis HS1] gi|322380261|ref|ZP_08054481.1| flagellar biosynthesis protein FliP [Helicobacter suis HS5] gi|321147298|gb|EFX41978.1| flagellar biosynthesis protein FliP [Helicobacter suis HS5] gi|321149200|gb|EFX43645.1| flagellar biosynthesis protein FliP [Helicobacter suis HS1] Length = 250 Score = 194 bits (494), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 99/195 (50%), Positives = 139/195 (71%), Gaps = 6/195 (3%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP L++++T F R I+VFS LRT +G PP +++SLAL +TF++M P +S E I Sbjct: 57 APSLVLVMTSFIRLIVVFSFLRTALGTQQTPPTQILVSLALILTFFIMEPAAKQSYESAI 116 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYR 170 +P + +I+ T A ++ PF FM NTREKDL+LF + R + KN + Sbjct: 117 KPYLVEKISYTEAFEKGIVPFKEFMLKNTREKDLALFFRI-----RRLENPKNASAVPLN 171 Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230 IL+P+FMISEL+ +F+IGFL+ LPFL+IDM+V++I+MAMGMMMLPP ISLPFK++ F+L Sbjct: 172 ILVPAFMISELKTAFQIGFLLYLPFLVIDMVVSSILMAMGMMMLPPVMISLPFKILVFIL 231 Query: 231 IDGWSLLVENLVKSF 245 +DG++LLVENLV SF Sbjct: 232 VDGFNLLVENLVASF 246 >gi|126738561|ref|ZP_01754266.1| flagellar biosynthetic protein FliP [Roseobacter sp. SK209-2-6] gi|126720360|gb|EBA17066.1| flagellar biosynthetic protein FliP [Roseobacter sp. SK209-2-6] Length = 247 Score = 194 bits (494), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 97/212 (45%), Positives = 142/212 (66%), Gaps = 3/212 (1%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 SIS ++ + T+LS+AP +LIM+TCFP + V SILR G+G+ PPN+++ISLALF Sbjct: 37 SISARSIQLILLITVLSLAPGMLIMITCFPFLVTVLSILRQGLGLQQAPPNMLMISLALF 96 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 +T++VM P + + GI PL+ QI T + R EPF FM N D+ Sbjct: 97 LTYFVMEPVFTEAWQTGISPLIEEQIDVETGLIRSLEPFRGFMANRLDPDTFYAIADL-R 155 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 + + D T + I +L+PSF++SE+ R+F+IGFL+ LPFL+ID++VA ++M+MGMMM Sbjct: 156 PATKGIDPTVDAPIS--VLVPSFLLSEIARAFQIGFLVFLPFLVIDLVVAAVLMSMGMMM 213 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PP +SLPFK+ FFV+ DGWSL+ LV+S+ Sbjct: 214 VPPAVVSLPFKLAFFVVADGWSLIATALVRSY 245 >gi|218549273|ref|YP_002383064.1| flagellar biosynthesis protein FliP [Escherichia fergusonii ATCC 35469] gi|218356814|emb|CAQ89442.1| flagellar biosynthesis protein [Escherichia fergusonii ATCC 35469] Length = 245 Score = 194 bits (494), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 102/239 (42%), Positives = 156/239 (65%), Gaps = 9/239 (3%) Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66 L+LVTP A + L ++ P +W V+T T L+ P +L+M+T F R I Sbjct: 12 LWLVTP---CALAQLPGLVTQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A++ Sbjct: 69 IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 + A+P FM TRE DL+LF +A++ I + + RIL+P+++ SEL+ +F+ Sbjct: 129 KGAQPLREFMLRQTREADLALFARLANTG----PIQGPEAVPMRILLPAYVTSELKTAFQ 184 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243 >gi|294678995|ref|YP_003579610.1| flagellar biosynthetic protein FliP [Rhodobacter capsulatus SB 1003] gi|294477815|gb|ADE87203.1| flagellar biosynthetic protein FliP [Rhodobacter capsulatus SB 1003] Length = 240 Score = 194 bits (494), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 100/199 (50%), Positives = 134/199 (67%), Gaps = 3/199 (1%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T+LS+AP L IMVTCFP + V SILR MG+ PPN++IISLALF+T++VM PT S Sbjct: 44 TLLSLAPGLAIMVTCFPFIVTVLSILRQAMGLQQSPPNMLIISLALFLTWFVMEPTFMAS 103 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 + GI+PL+ +I TA +R EPF +FM T D F +A T Sbjct: 104 YQAGIEPLIAQKIDIVTAFERGVEPFRIFMAGRT---DPETFTQLAAIREGATYTGTARE 160 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 IL+PSFM+SE+ R+FEIGFL+ LPFLIID++V+ I+M+MGMMM+PP ++LPFK+ Sbjct: 161 APLSILVPSFMLSEITRAFEIGFLVFLPFLIIDLVVSAILMSMGMMMVPPAVVALPFKLA 220 Query: 227 FFVLIDGWSLLVENLVKSF 245 FFV+ +GW LL LV+S+ Sbjct: 221 FFVVANGWVLLSGALVRSY 239 >gi|268679749|ref|YP_003304180.1| flagellar biosynthetic protein FliP [Sulfurospirillum deleyianum DSM 6946] gi|268617780|gb|ACZ12145.1| flagellar biosynthetic protein FliP [Sulfurospirillum deleyianum DSM 6946] Length = 238 Score = 194 bits (494), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 95/195 (48%), Positives = 141/195 (72%), Gaps = 6/195 (3%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP L+ M+T F R +IVFS LR +G +PP+ V++SLA+ +TF++M P + S ++ I Sbjct: 48 APSLIFMMTSFLRLLIVFSFLRQALGTQQMPPSQVMVSLAMILTFFIMEPVMKESYDVAI 107 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYR 170 +P + +++ A ++ + PF FM NTREKDL+LF + RN + KN + + Sbjct: 108 KPYLAEKMSYQEAFEKGSAPFKAFMIRNTREKDLALFFRI-----RNLENPKNIEDVPLT 162 Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230 + +P+FMISEL+ +FEIGFL+ LPFL+IDM+V++++MAMGMMMLPP ISLPFK++ FVL Sbjct: 163 VAMPAFMISELKTAFEIGFLLYLPFLVIDMVVSSVLMAMGMMMLPPAMISLPFKLLIFVL 222 Query: 231 IDGWSLLVENLVKSF 245 +DGW+LLV+ LV+SF Sbjct: 223 VDGWNLLVQRLVESF 237 >gi|317051545|ref|YP_004112661.1| flagellar biosynthetic protein FliP [Desulfurispirillum indicum S5] gi|316946629|gb|ADU66105.1| flagellar biosynthetic protein FliP [Desulfurispirillum indicum S5] Length = 253 Score = 194 bits (494), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 96/195 (49%), Positives = 139/195 (71%), Gaps = 4/195 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +L+++T F R +IV S LR MG PPN V++SLALF+TFY+M PT + ++ + Sbjct: 61 APSILVLMTSFVRILIVLSFLRQAMGTMQSPPNQVLVSLALFLTFYIMMPTFQQINDVAL 120 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 QP +N +I A+ A P FM +TREKDL+LF+ H S TK D + + Sbjct: 121 QPYLNQEIGTQEALDNAARPLSEFMLKHTREKDLALFV---HFSGDERPATKED-VSFFT 176 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 L+P+F+ISEL+ +F++GF+I +PFLIIDM+VA+ +M+MGMMMLPP IS+PFKVI FVL+ Sbjct: 177 LVPAFVISELKTAFQMGFMIFIPFLIIDMVVASTLMSMGMMMLPPAMISMPFKVILFVLV 236 Query: 232 DGWSLLVENLVKSFI 246 DGW+L++ +L++SF+ Sbjct: 237 DGWNLVMSSLLRSFV 251 >gi|296273474|ref|YP_003656105.1| flagellar biosynthetic protein FliP [Arcobacter nitrofigilis DSM 7299] gi|296097648|gb|ADG93598.1| flagellar biosynthetic protein FliP [Arcobacter nitrofigilis DSM 7299] Length = 242 Score = 194 bits (494), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 97/194 (50%), Positives = 133/194 (68%), Gaps = 6/194 (3%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P LL+MVT F R IIV S+LR MG+ PPN ++IS+AL +T ++M P S GI+ Sbjct: 53 PTLLLMVTSFTRLIIVLSLLRQAMGLQQAPPNQIVISMALILTIFIMEPYAKTSYNEGIK 112 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYRI 171 P M +I A + +PF FM NTRE+D++LF + + KN D + + Sbjct: 113 PYMEEKIGYEEAFAKSVKPFKEFMIKNTREEDIALFYRIKKEKN-----PKNIDDVALTL 167 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 L+P+F++SELR +FEIGFLI LPFL+ID+IVA+I+M++GMMMLPP ISLP KVIFF++I Sbjct: 168 LMPAFIVSELRTAFEIGFLIFLPFLVIDIIVASILMSLGMMMLPPVMISLPIKVIFFIII 227 Query: 232 DGWSLLVENLVKSF 245 DGW L++ NL +SF Sbjct: 228 DGWQLIIGNLAQSF 241 >gi|146312185|ref|YP_001177259.1| flagellar biosynthesis protein FliP [Enterobacter sp. 638] gi|145319061|gb|ABP61208.1| flagellar biosynthetic protein FliP [Enterobacter sp. 638] Length = 245 Score = 194 bits (494), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 96/227 (42%), Positives = 150/227 (66%), Gaps = 6/227 (2%) Query: 21 SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 + L +++ P +W V+T T L+ P +L+M+T F R IIVF +LR +G Sbjct: 21 AQLPGLISTPMAGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIIIVFGLLRNALGT 80 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 S PPN V++ LALF+TF++MSP +D+ QP ++I+ A+++ A+P FM Sbjct: 81 PSAPPNQVLLGLALFLTFFIMSPVIDKIYADAYQPFSEDKISMQVALEKGAQPLREFMLR 140 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 TRE DL+LF +A+ I + + RIL+P+++ SEL+ +F+IGF I +PFLII Sbjct: 141 QTREADLALFARLANEG----PIQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLII 196 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 D+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 197 DLVIASVLMALGMMMVPPATIALPFKIMLFVLVDGWQLLVGSLAQSF 243 >gi|238916764|ref|YP_002930281.1| triacylglycerol lipase [Eubacterium eligens ATCC 27750] gi|238872124|gb|ACR71834.1| triacylglycerol lipase [Eubacterium eligens ATCC 27750] Length = 267 Score = 194 bits (493), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 95/201 (47%), Positives = 137/201 (68%), Gaps = 2/201 (0%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T++S+AP +LIM+T F R +IV R +G +VPPN VII L+LF+TF+VMSPT Sbjct: 68 VLTVISLAPSILIMLTSFTRIVIVLHFTRAAIGTQTVPPNQVIIGLSLFLTFFVMSPTFT 127 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + ++PL NN+I+ A + +P FM T KDL F +A + +T Sbjct: 128 EIYDSALKPLSNNEISVEEAYETGVKPLKTFMLKQTSTKDLDTFFKIA--GYEEGSVTSE 185 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D I +L+PSF+ISELR +F IGFLI +PF+IIDM+V++ +M+MGMMMLPPT+IS PFK Sbjct: 186 DDISMTVLVPSFIISELRIAFIIGFLIYIPFIIIDMVVSSTLMSMGMMMLPPTTISAPFK 245 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FV+ DGW+L++ NL+ +F Sbjct: 246 ILLFVMADGWNLIIGNLITTF 266 >gi|322806978|emb|CBZ04548.1| flagellar biosynthesis protein FliP [Clostridium botulinum H04402 065] Length = 258 Score = 194 bits (493), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 97/199 (48%), Positives = 140/199 (70%), Gaps = 4/199 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T+L++ P ++M+T F R I+VF LR MG PPN V+I LALF+T ++M P Sbjct: 63 TVLTLLPSFIVMMTSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEI 122 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 IQP M N+IT+ A++ A+P FM TR+KDL LF+D+A N +TK++ Sbjct: 123 NTKAIQPYMKNKITQEQAVEIGAKPLRQFMLKQTRQKDLKLFVDLAKP---NFKVTKDNA 179 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 Y I++P+F+ISEL+ +F+IGFL+ +PFLIID++VA+++M+MGM MLPP ISLPFK++ Sbjct: 180 PLY-IVVPAFIISELKTAFQIGFLLFIPFLIIDLVVASVLMSMGMFMLPPVMISLPFKLL 238 Query: 227 FFVLIDGWSLLVENLVKSF 245 FV++DGW LLV++LV SF Sbjct: 239 LFVMVDGWYLLVKSLVMSF 257 >gi|322616972|gb|EFY13880.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618211|gb|EFY15103.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625882|gb|EFY22701.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626334|gb|EFY23144.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632749|gb|EFY29494.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639091|gb|EFY35784.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640407|gb|EFY37063.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647232|gb|EFY43731.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649920|gb|EFY46341.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655528|gb|EFY51836.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660306|gb|EFY56544.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662987|gb|EFY59194.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668172|gb|EFY64331.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674069|gb|EFY70163.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675579|gb|EFY71653.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683010|gb|EFY79026.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686704|gb|EFY82682.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195408|gb|EFZ80588.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198064|gb|EFZ83181.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204464|gb|EFZ89470.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207554|gb|EFZ92502.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211007|gb|EFZ95867.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217539|gb|EGA02258.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220728|gb|EGA05172.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226685|gb|EGA10882.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231561|gb|EGA15674.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236004|gb|EGA20083.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240574|gb|EGA24617.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245466|gb|EGA29466.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247584|gb|EGA31535.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253953|gb|EGA37777.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255519|gb|EGA39280.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262117|gb|EGA45680.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266240|gb|EGA49730.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270651|gb|EGA54092.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 245 Score = 194 bits (493), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 100/240 (41%), Positives = 155/240 (64%), Gaps = 9/240 (3%) Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRF 65 L+L +P A + L +++ P +W V+T T L+ P +L+M+T F R Sbjct: 11 GLWLFSPT---AAAQLPGLISQPLAGGGQSWSLSVQTLVFITSLTFLPAILLMMTSFTRI 67 Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A+ Sbjct: 68 IIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQKISMQEAL 127 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185 + A+P FM TRE DL+LF +A+S + + + RIL+P+++ SEL+ +F Sbjct: 128 DKGAQPLRAFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSELKTAF 183 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 184 QIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243 >gi|15802383|ref|NP_288409.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H7 EDL933] gi|15831941|ref|NP_310714.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str. Sakai] gi|16129895|ref|NP_416458.1| flagellar biosynthesis protein [Escherichia coli str. K-12 substr. MG1655] gi|89108780|ref|AP_002560.1| flagellar biosynthesis protein [Escherichia coli str. K-12 substr. W3110] gi|157156523|ref|YP_001463250.1| flagellar biosynthesis protein FliP [Escherichia coli E24377A] gi|168751877|ref|ZP_02776899.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC4113] gi|168758262|ref|ZP_02783269.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC4401] gi|168764426|ref|ZP_02789433.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC4501] gi|168771555|ref|ZP_02796562.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC4486] gi|168777375|ref|ZP_02802382.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC4196] gi|168783345|ref|ZP_02808352.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC4076] gi|168790292|ref|ZP_02815299.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC869] gi|168802295|ref|ZP_02827302.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC508] gi|170081592|ref|YP_001730912.1| flagellar biosynthesis protein [Escherichia coli str. K-12 substr. DH10B] gi|170682430|ref|YP_001743297.1| flagellar biosynthesis protein FliP [Escherichia coli SMS-3-5] gi|191168304|ref|ZP_03030097.1| flagellar biosynthetic protein FliP [Escherichia coli B7A] gi|193066380|ref|ZP_03047428.1| flagellar biosynthetic protein FliP [Escherichia coli E22] gi|193071148|ref|ZP_03052072.1| flagellar biosynthetic protein FliP [Escherichia coli E110019] gi|194429937|ref|ZP_03062447.1| flagellar biosynthetic protein FliP [Escherichia coli B171] gi|194439571|ref|ZP_03071644.1| flagellar biosynthetic protein FliP [Escherichia coli 101-1] gi|195939254|ref|ZP_03084636.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str. EC4024] gi|208810650|ref|ZP_03252526.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC4206] gi|208816935|ref|ZP_03258055.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC4045] gi|208819585|ref|ZP_03259905.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC4042] gi|209400543|ref|YP_002271065.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC4115] gi|217328816|ref|ZP_03444897.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. TW14588] gi|218554528|ref|YP_002387441.1| flagellar biosynthesis protein FliP [Escherichia coli IAI1] gi|218695553|ref|YP_002403220.1| flagellar biosynthesis protein FliP [Escherichia coli 55989] gi|237705907|ref|ZP_04536388.1| flagellar biosynthetic protein fliP [Escherichia sp. 3_2_53FAA] gi|238901153|ref|YP_002926949.1| flagellar biosynthesis protein [Escherichia coli BW2952] gi|253773103|ref|YP_003035934.1| flagellar biosynthesis protein FliP [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254793598|ref|YP_003078435.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str. TW14359] gi|256017859|ref|ZP_05431724.1| flagellar biosynthesis protein FliP [Shigella sp. D9] gi|256022394|ref|ZP_05436259.1| flagellar biosynthesis protein FliP [Escherichia sp. 4_1_40B] gi|260844347|ref|YP_003222125.1| flagellar biosynthesis protein FliP [Escherichia coli O103:H2 str. 12009] gi|261227557|ref|ZP_05941838.1| flagellar biosynthesis protein [Escherichia coli O157:H7 str. FRIK2000] gi|261254619|ref|ZP_05947152.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str. FRIK966] gi|291283125|ref|YP_003499943.1| Flagellar biosynthetic protein fliP precursor [Escherichia coli O55:H7 str. CB9615] gi|293415258|ref|ZP_06657901.1| flagellar biosynthetic protein FliP [Escherichia coli B185] gi|293446328|ref|ZP_06662750.1| flagellar biosynthetic protein FliP [Escherichia coli B088] gi|300920167|ref|ZP_07136617.1| flagellar biosynthetic protein FliP [Escherichia coli MS 115-1] gi|300923889|ref|ZP_07139904.1| flagellar biosynthetic protein FliP [Escherichia coli MS 182-1] gi|301029405|ref|ZP_07192499.1| flagellar biosynthetic protein FliP [Escherichia coli MS 196-1] gi|307138615|ref|ZP_07497971.1| flagellar biosynthesis protein FliP [Escherichia coli H736] gi|309795945|ref|ZP_07690358.1| flagellar biosynthetic protein FliP [Escherichia coli MS 145-7] gi|312973835|ref|ZP_07788007.1| flagellar biosynthetic protein FliP [Escherichia coli 1827-70] gi|331642569|ref|ZP_08343704.1| flagellar biosynthetic protein FliP [Escherichia coli H736] gi|331677830|ref|ZP_08378505.1| flagellar biosynthetic protein FliP [Escherichia coli H591] gi|332278885|ref|ZP_08391298.1| flagellar biosynthesis protein [Shigella sp. D9] gi|81175289|sp|P0AC06|FLIP_ECO57 RecName: Full=Flagellar biosynthetic protein fliP; Flags: Precursor gi|81175290|sp|P0AC05|FLIP_ECOLI RecName: Full=Flagellar biosynthetic protein fliP; Flags: Precursor gi|12516055|gb|AAG56963.1|AE005417_5 flagellar biosynthesis [Escherichia coli O157:H7 str. EDL933] gi|347243|gb|AAC36859.1| flagellar protein [Escherichia coli] gi|1736614|dbj|BAA15773.1| flagellar biosynthesis protein [Escherichia coli str. K12 substr. W3110] gi|1788259|gb|AAC75015.1| flagellar biosynthesis protein [Escherichia coli str. K-12 substr. MG1655] gi|13362155|dbj|BAB36110.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. Sakai] gi|157078553|gb|ABV18261.1| flagellar biosynthetic protein FliP [Escherichia coli E24377A] gi|169889427|gb|ACB03134.1| flagellar biosynthesis protein [Escherichia coli str. K-12 substr. DH10B] gi|170520148|gb|ACB18326.1| flagellar biosynthetic protein FliP [Escherichia coli SMS-3-5] gi|187767404|gb|EDU31248.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC4196] gi|188014148|gb|EDU52270.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC4113] gi|188999261|gb|EDU68247.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC4076] gi|189354902|gb|EDU73321.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC4401] gi|189359722|gb|EDU78141.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC4486] gi|189365562|gb|EDU83978.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC4501] gi|189370182|gb|EDU88598.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC869] gi|189375715|gb|EDU94131.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC508] gi|190901676|gb|EDV61432.1| flagellar biosynthetic protein FliP [Escherichia coli B7A] gi|192925965|gb|EDV80611.1| flagellar biosynthetic protein FliP [Escherichia coli E22] gi|192955543|gb|EDV86022.1| flagellar biosynthetic protein FliP [Escherichia coli E110019] gi|194412026|gb|EDX28338.1| flagellar biosynthetic protein FliP [Escherichia coli B171] gi|194421480|gb|EDX37494.1| flagellar biosynthetic protein FliP [Escherichia coli 101-1] gi|208725166|gb|EDZ74873.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC4206] gi|208731278|gb|EDZ79967.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC4045] gi|208739708|gb|EDZ87390.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC4042] gi|209161943|gb|ACI39376.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC4115] gi|209766788|gb|ACI81706.1| flagellar biosynthetic protein FliP [Escherichia coli] gi|209766790|gb|ACI81707.1| flagellar biosynthetic protein FliP [Escherichia coli] gi|209766792|gb|ACI81708.1| flagellar biosynthetic protein FliP [Escherichia coli] gi|209766794|gb|ACI81709.1| flagellar biosynthetic protein FliP [Escherichia coli] gi|209766796|gb|ACI81710.1| flagellar biosynthetic protein FliP [Escherichia coli] gi|217318163|gb|EEC26590.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. TW14588] gi|218352285|emb|CAU98042.1| flagellar biosynthesis protein [Escherichia coli 55989] gi|218361296|emb|CAQ98880.1| flagellar biosynthesis protein [Escherichia coli IAI1] gi|226900664|gb|EEH86923.1| flagellar biosynthetic protein fliP [Escherichia sp. 3_2_53FAA] gi|238861098|gb|ACR63096.1| flagellar biosynthesis protein [Escherichia coli BW2952] gi|253324147|gb|ACT28749.1| flagellar biosynthetic protein FliP [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254592998|gb|ACT72359.1| flagellar biosynthesis protein [Escherichia coli O157:H7 str. TW14359] gi|257759494|dbj|BAI30991.1| flagellar biosynthesis protein FliP [Escherichia coli O103:H2 str. 12009] gi|260448939|gb|ACX39361.1| flagellar biosynthetic protein FliP [Escherichia coli DH1] gi|284921856|emb|CBG34931.1| flagellar biosynthetic protein FliP [Escherichia coli 042] gi|290762998|gb|ADD56959.1| Flagellar biosynthetic protein fliP precursor [Escherichia coli O55:H7 str. CB9615] gi|291323158|gb|EFE62586.1| flagellar biosynthetic protein FliP [Escherichia coli B088] gi|291432906|gb|EFF05885.1| flagellar biosynthetic protein FliP [Escherichia coli B185] gi|299877709|gb|EFI85920.1| flagellar biosynthetic protein FliP [Escherichia coli MS 196-1] gi|300412824|gb|EFJ96134.1| flagellar biosynthetic protein FliP [Escherichia coli MS 115-1] gi|300419852|gb|EFK03163.1| flagellar biosynthetic protein FliP [Escherichia coli MS 182-1] gi|308120395|gb|EFO57657.1| flagellar biosynthetic protein FliP [Escherichia coli MS 145-7] gi|310332430|gb|EFP99665.1| flagellar biosynthetic protein FliP [Escherichia coli 1827-70] gi|315136585|dbj|BAJ43744.1| flagellar biosynthetic protein fliP precursor [Escherichia coli DH1] gi|315286656|gb|EFU46089.1| flagellar biosynthetic protein FliP [Escherichia coli MS 110-3] gi|320191922|gb|EFW66569.1| Flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str. EC1212] gi|320198639|gb|EFW73239.1| Flagellar biosynthesis protein FliP [Escherichia coli EC4100B] gi|320641796|gb|EFX11184.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str. G5101] gi|320647155|gb|EFX15988.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H- str. 493-89] gi|320652439|gb|EFX20737.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H- str. H 2687] gi|320658041|gb|EFX25803.1| flagellar biosynthesis protein FliP [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658613|gb|EFX26307.1| flagellar biosynthesis protein FliP [Escherichia coli O55:H7 str. USDA 5905] gi|320668511|gb|EFX35338.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str. LSU-61] gi|323158573|gb|EFZ44587.1| flagellar biosynthetic protein FliP [Escherichia coli E128010] gi|323174672|gb|EFZ60292.1| flagellar biosynthetic protein FliP [Escherichia coli LT-68] gi|323183932|gb|EFZ69319.1| flagellar biosynthetic protein FliP [Escherichia coli 1357] gi|323948348|gb|EGB44335.1| flagellar biosynthetic protein FliP [Escherichia coli H120] gi|323956344|gb|EGB52087.1| flagellar biosynthetic protein FliP [Escherichia coli H263] gi|324018857|gb|EGB88076.1| flagellar biosynthetic protein FliP [Escherichia coli MS 117-3] gi|326342359|gb|EGD66140.1| Flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str. 1044] gi|326344863|gb|EGD68610.1| Flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str. 1125] gi|331039367|gb|EGI11587.1| flagellar biosynthetic protein FliP [Escherichia coli H736] gi|331074290|gb|EGI45610.1| flagellar biosynthetic protein FliP [Escherichia coli H591] gi|332101237|gb|EGJ04583.1| flagellar biosynthesis protein [Shigella sp. D9] Length = 245 Score = 194 bits (493), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 102/239 (42%), Positives = 157/239 (65%), Gaps = 9/239 (3%) Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66 L+L+TP L FA+ L + + P +W V+T T L+ P +L+M+T F R I Sbjct: 12 LWLITP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A++ Sbjct: 69 IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 + A+P FM TRE DL LF +A++ + + + RIL+P+++ SEL+ +F+ Sbjct: 129 KGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQ 184 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243 >gi|26248217|ref|NP_754257.1| flagellar biosynthesis protein FliP [Escherichia coli CFT073] gi|110642054|ref|YP_669784.1| flagellar biosynthesis protein FliP [Escherichia coli 536] gi|110805917|ref|YP_689437.1| flagellar biosynthesis protein FliP [Shigella flexneri 5 str. 8401] gi|161485898|ref|NP_707833.2| flagellar biosynthesis protein FliP [Shigella flexneri 2a str. 301] gi|191173282|ref|ZP_03034812.1| flagellar biosynthetic protein FliP [Escherichia coli F11] gi|218699491|ref|YP_002407120.1| flagellar biosynthesis protein FliP [Escherichia coli IAI39] gi|227885623|ref|ZP_04003428.1| flagellar biosynthesis protein FliP [Escherichia coli 83972] gi|300940403|ref|ZP_07154988.1| flagellar biosynthetic protein FliP [Escherichia coli MS 21-1] gi|300975537|ref|ZP_07173048.1| flagellar biosynthetic protein FliP [Escherichia coli MS 45-1] gi|301050691|ref|ZP_07197552.1| flagellar biosynthetic protein FliP [Escherichia coli MS 185-1] gi|306814229|ref|ZP_07448395.1| flagellar biosynthesis protein FliP [Escherichia coli NC101] gi|331647542|ref|ZP_08348634.1| flagellar biosynthetic protein FliP [Escherichia coli M605] gi|26108621|gb|AAN80824.1|AE016762_77 Flagellar biosynthetic protein fliP precursor [Escherichia coli CFT073] gi|110343646|gb|ABG69883.1| flagellar biosynthetic protein FliP precursor [Escherichia coli 536] gi|110615465|gb|ABF04132.1| flagellar biosynthetic protein FliP [Shigella flexneri 5 str. 8401] gi|190906399|gb|EDV66008.1| flagellar biosynthetic protein FliP [Escherichia coli F11] gi|218369477|emb|CAR17242.1| flagellar biosynthesis protein [Escherichia coli IAI39] gi|222033687|emb|CAP76428.1| flagellar biosynthetic protein fliP [Escherichia coli LF82] gi|227837196|gb|EEJ47662.1| flagellar biosynthesis protein FliP [Escherichia coli 83972] gi|281179010|dbj|BAI55340.1| flagellar biosynthetic protein FliP [Escherichia coli SE15] gi|300297614|gb|EFJ53999.1| flagellar biosynthetic protein FliP [Escherichia coli MS 185-1] gi|300410306|gb|EFJ93844.1| flagellar biosynthetic protein FliP [Escherichia coli MS 45-1] gi|300454797|gb|EFK18290.1| flagellar biosynthetic protein FliP [Escherichia coli MS 21-1] gi|305852388|gb|EFM52839.1| flagellar biosynthesis protein FliP [Escherichia coli NC101] gi|307553961|gb|ADN46736.1| flagellar biosynthetic protein FliP [Escherichia coli ABU 83972] gi|312946541|gb|ADR27368.1| flagellar biosynthesis protein FliP [Escherichia coli O83:H1 str. NRG 857C] gi|315290265|gb|EFU49643.1| flagellar biosynthetic protein FliP [Escherichia coli MS 153-1] gi|315296482|gb|EFU55779.1| flagellar biosynthetic protein FliP [Escherichia coli MS 16-3] gi|320194339|gb|EFW68970.1| Flagellar biosynthesis protein FliP [Escherichia coli WV_060327] gi|323186704|gb|EFZ72026.1| flagellar biosynthetic protein FliP [Escherichia coli RN587/1] gi|324005853|gb|EGB75072.1| flagellar biosynthetic protein FliP [Escherichia coli MS 57-2] gi|324013503|gb|EGB82722.1| flagellar biosynthetic protein FliP [Escherichia coli MS 60-1] gi|330911754|gb|EGH40264.1| flagellar biosynthesis protein FliP [Escherichia coli AA86] gi|331043266|gb|EGI15404.1| flagellar biosynthetic protein FliP [Escherichia coli M605] gi|333004053|gb|EGK23587.1| flagellar biosynthetic protein FliP [Shigella flexneri K-272] gi|333017826|gb|EGK37133.1| flagellar biosynthetic protein FliP [Shigella flexneri K-227] Length = 245 Score = 194 bits (493), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 102/239 (42%), Positives = 157/239 (65%), Gaps = 9/239 (3%) Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66 L+L+TP L FA+ L + + P +W V+T T L+ P +L+M+T F R I Sbjct: 12 LWLITP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A++ Sbjct: 69 IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 + A+P FM TRE DL LF +A++ + + + RIL+P+++ SEL+ +F+ Sbjct: 129 KGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQ 184 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243 >gi|329890585|ref|ZP_08268928.1| flagellar biosynthetic protein FliP [Brevundimonas diminuta ATCC 11568] gi|328845886|gb|EGF95450.1| flagellar biosynthetic protein FliP [Brevundimonas diminuta ATCC 11568] Length = 238 Score = 194 bits (493), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 95/218 (43%), Positives = 147/218 (67%), Gaps = 4/218 (1%) Query: 28 NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87 ++ + ++ +V+ G+ T+LS+AP ++IM T F R ++V S+LRT +GM PPN V+ Sbjct: 18 DLGSGAGLTQRVVQLVGLMTVLSLAPSIVIMTTSFVRIVVVLSLLRTALGMQQSPPNAVL 77 Query: 88 ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147 +SLALF++ VM PT + + GI+PLM+ Q+ A +EP FM + DL+L Sbjct: 78 VSLALFLSAIVMGPTWQDAYDSGIRPLMDQQMELPQAFDAASEPVKTFMLAQVKPDDLAL 137 Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 F ++ D+ + R++ P+FMISEL+ +F IGFL+ +PFL+ID++VA+++M Sbjct: 138 FTRLSRV-EAPADV---QDLPLRVVTPAFMISELKTAFTIGFLLFVPFLVIDLVVASVLM 193 Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MGMMMLPP +SLPFK+IFFVL+DGW L+ +LV+SF Sbjct: 194 SMGMMMLPPVVVSLPFKLIFFVLVDGWRLVAGSLVESF 231 >gi|167585022|ref|ZP_02377410.1| flagellar biosynthesis protein FliP [Burkholderia ubonensis Bu] Length = 253 Score = 194 bits (493), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 93/206 (45%), Positives = 142/206 (68%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T + T+LS P +L+M+T F R IIV S+LR +G S PPN V++ LA+F+TF+VM Sbjct: 51 VQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQALGTSSTPPNQVLVGLAMFLTFFVM 110 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP LDR+ G +P + + A+QR PF FM TRE DL+LF ++ ++ Sbjct: 111 SPVLDRAYNDGYKPFSDGSVPMEQAVQRGVAPFKGFMLKQTRETDLALFAKISKAA---- 166 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + +L+P+F+ SEL+ F+IGF I +PFLIIDM+VA+++M+MGMMM+ P+++ Sbjct: 167 PMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPSTV 226 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FV++DGW LL+ +L +SF Sbjct: 227 SLPFKLMLFVVVDGWQLLLGSLAQSF 252 >gi|194434965|ref|ZP_03067208.1| flagellar biosynthetic protein FliP [Shigella dysenteriae 1012] gi|194416800|gb|EDX32926.1| flagellar biosynthetic protein FliP [Shigella dysenteriae 1012] gi|320182735|gb|EFW57619.1| Flagellar biosynthesis protein FliP [Shigella boydii ATCC 9905] gi|332095503|gb|EGJ00519.1| flagellar biosynthetic protein FliP [Shigella dysenteriae 155-74] Length = 245 Score = 194 bits (493), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 102/239 (42%), Positives = 157/239 (65%), Gaps = 9/239 (3%) Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66 L+L+TP L FA+ L + + P +W V+T T L+ P +L+M+T F R I Sbjct: 12 LWLITP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A++ Sbjct: 69 IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 + A+P FM TRE DL LF +A++ + + + RIL+P+++ SEL+ +F+ Sbjct: 129 KGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQ 184 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243 >gi|331657994|ref|ZP_08358956.1| flagellar biosynthetic protein FliP [Escherichia coli TA206] gi|331056242|gb|EGI28251.1| flagellar biosynthetic protein FliP [Escherichia coli TA206] Length = 245 Score = 194 bits (493), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 102/239 (42%), Positives = 157/239 (65%), Gaps = 9/239 (3%) Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66 L+L+TP L FA+ L + + P +W V+T T L+ P +L+M+T F R I Sbjct: 12 LWLITP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A++ Sbjct: 69 IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 + A+P FM TRE DL LF +A++ + + + RIL+P+++ SEL+ +F+ Sbjct: 129 KGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQ 184 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243 >gi|253573534|ref|ZP_04850877.1| flagellar biosynthetic protein FliP [Paenibacillus sp. oral taxon 786 str. D14] gi|251847062|gb|EES75067.1| flagellar biosynthetic protein FliP [Paenibacillus sp. oral taxon 786 str. D14] Length = 255 Score = 194 bits (493), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 92/199 (46%), Positives = 141/199 (70%), Gaps = 4/199 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T+LSIAP +L+++T F R ++V +R+ +G +PPN V+I LALF+T ++MSPTL Sbjct: 59 TVLSIAPAILVLMTSFTRIVVVLGFVRSSLGTQQMPPNQVLIGLALFLTLFIMSPTLSTI 118 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 E+ +QP + +IT+T A+ + A P FM ++TR KDL LFM + + Sbjct: 119 NEVAVQPYIKGEITQTEALDKAAVPMKKFMYSHTRTKDLQLFMGYTKMEKPKS----YED 174 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 I +++P+F ISEL+ +F++GF+I +PFLIID++V++++MAMGMMMLPP ISLPFK++ Sbjct: 175 IPLSVMVPAFAISELKTAFQMGFMIFIPFLIIDIVVSSVLMAMGMMMLPPVMISLPFKIL 234 Query: 227 FFVLIDGWSLLVENLVKSF 245 FVL+DGW L+V++L+ SF Sbjct: 235 LFVLVDGWYLIVKSLLVSF 253 >gi|168244830|ref|ZP_02669762.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194448965|ref|YP_002046030.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|238912448|ref|ZP_04656285.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|194407269|gb|ACF67488.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205336386|gb|EDZ23150.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 245 Score = 194 bits (493), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 97/229 (42%), Positives = 150/229 (65%), Gaps = 6/229 (2%) Query: 19 AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 A + L +++ P +W V+T T L+ P +L+M+T F R IIVF +LR + Sbjct: 19 AAAQLPGLISQPLAGGGQSWSLSVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNAL 78 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G S PPN V++ LALF+TF++MSP +D+ QP +I+ A+ + A+P FM Sbjct: 79 GTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQKISMQEALDKGAQPLRAFM 138 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 TRE DL+LF +A+S + + + RIL+P+++ SEL+ +F+IGF I +PFL Sbjct: 139 LRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFL 194 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 195 IIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243 >gi|296103568|ref|YP_003613714.1| flagellar biosynthesis protein FliP [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058027|gb|ADF62765.1| flagellar biosynthesis protein FliP [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 245 Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 94/227 (41%), Positives = 152/227 (66%), Gaps = 6/227 (2%) Query: 21 SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 + L +++ P +W V+T T L+ P +L+M+T F R IIVF +LR +G Sbjct: 21 AQLPGLVSTPLAGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIIIVFGLLRNALGT 80 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 S PPN V++ LALF+TF++MSP +D+ QP ++I+ A+++ A+P FM Sbjct: 81 PSAPPNQVLLGLALFLTFFIMSPVIDKIYTDAYQPFSEDKISMQEALEKGAQPLREFMLR 140 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 TRE DL+LF ++++ ++ + + RIL+P+++ SEL+ +F+IGF I +PFLII Sbjct: 141 QTREADLALFARLSNTG----ELQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLII 196 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 D+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 197 DLVIASVLMALGMMMVPPATIALPFKIMLFVLVDGWQLLVSSLAQSF 243 >gi|153941323|ref|YP_001391949.1| flagellar biosynthesis protein FliP [Clostridium botulinum F str. Langeland] gi|152937219|gb|ABS42717.1| flagellar biosynthetic protein FliP [Clostridium botulinum F str. Langeland] gi|295319967|gb|ADG00345.1| flagellar biosynthetic protein FliP [Clostridium botulinum F str. 230613] Length = 258 Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 97/199 (48%), Positives = 140/199 (70%), Gaps = 4/199 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T+L++ P ++M+T F R I+VF LR MG PPN V+I LALF+T ++M P Sbjct: 63 TVLTLLPSFIVMMTSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMYPVYSEV 122 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 IQP M N+IT+ A++ A+P FM TR+KDL LF+D+A N +TK++ Sbjct: 123 NTKAIQPYMKNKITQEQAVEIGAKPLRQFMLKQTRQKDLKLFVDLAKP---NFKVTKDNA 179 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 Y I++P+F+ISEL+ +F+IGFL+ +PFLIID++VA+++M+MGM MLPP ISLPFK++ Sbjct: 180 PLY-IVVPAFIISELKTAFQIGFLLFIPFLIIDLVVASVLMSMGMFMLPPVMISLPFKLL 238 Query: 227 FFVLIDGWSLLVENLVKSF 245 FV++DGW LLV++LV SF Sbjct: 239 LFVMVDGWYLLVKSLVMSF 257 >gi|167834870|ref|ZP_02461753.1| flagellar biosynthesis protein FliP [Burkholderia thailandensis MSMB43] Length = 253 Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 94/206 (45%), Positives = 139/206 (67%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T + T+LS P +L+M+T F R IIV S+LR +G S PPN V++ LALF+T +VM Sbjct: 51 VQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQALGTASTPPNQVLVGLALFLTLFVM 110 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP LDR+ +P + A+QR A PF FM TRE DL+LF ++ ++ Sbjct: 111 SPVLDRAYADAYKPFSEGTLQMDQAVQRGAAPFKTFMLKQTRETDLALFAKISKAAP--- 167 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + +L+P+F+ SEL+ F+IGF I +PFLIIDM+VA+++M+MGMMM+ P ++ Sbjct: 168 -MQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATV 226 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 227 SLPFKLMLFVLVDGWQLLIGSLAQSF 252 >gi|161613452|ref|YP_001587417.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168259734|ref|ZP_02681707.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|161362816|gb|ABX66584.1| hypothetical protein SPAB_01169 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|205351247|gb|EDZ37878.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 245 Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 97/229 (42%), Positives = 150/229 (65%), Gaps = 6/229 (2%) Query: 19 AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 A + L +++ P +W V+T T L+ P +L+M+T F R IIVF +LR + Sbjct: 19 AAAQLPGLISQPLAGGGQSWSLSVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNAL 78 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G S PPN V++ LALF+TF++MSP +D+ QP +I+ A+ + A+P FM Sbjct: 79 GTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQKISMQEALDKGAQPLRAFM 138 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 TRE DL+LF +A+S + + + RIL+P+++ SEL+ +F+IGF I +PFL Sbjct: 139 LRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFL 194 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 195 IIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243 >gi|170698077|ref|ZP_02889158.1| flagellar biosynthetic protein FliP [Burkholderia ambifaria IOP40-10] gi|170137038|gb|EDT05285.1| flagellar biosynthetic protein FliP [Burkholderia ambifaria IOP40-10] Length = 253 Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 97/235 (41%), Positives = 152/235 (64%), Gaps = 7/235 (2%) Query: 14 PELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70 P L A+++ N P + + V+T + T+LS P +L+M+T F R IIV S Sbjct: 22 PALACAQAAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTRIIIVLS 81 Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130 +LR +G + PPN V++ LA+F+TF+VMSP LDR+ G +P + + A++R Sbjct: 82 LLRQALGTATTPPNQVLVGLAMFLTFFVMSPVLDRAYADGYKPFSDGSMPMEQAVRRGVA 141 Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190 PF FM TRE DL+LF ++ ++ + + + +L+P+F+ SEL+ F+IGF Sbjct: 142 PFKTFMLKQTRETDLALFAKISKAA----PMQGPEDVPLSLLVPAFVTSELKTGFQIGFT 197 Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 I +PFLIIDM+VA+++M+MGMMM+ P+++SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 198 IFIPFLIIDMVVASVLMSMGMMMVSPSTVSLPFKLMLFVLVDGWQLLIGSLAQSF 252 >gi|292669767|ref|ZP_06603193.1| flagellar biosynthetic protein FliP [Selenomonas noxia ATCC 43541] gi|292648564|gb|EFF66536.1| flagellar biosynthetic protein FliP [Selenomonas noxia ATCC 43541] Length = 249 Score = 194 bits (492), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 93/216 (43%), Positives = 151/216 (69%), Gaps = 7/216 (3%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P D++ S ++ + TI+S+AP +L+M T F R ++V LR + +VPPN V+I+ Sbjct: 40 PQDVATS---MQLLAVLTIVSLAPAILVMTTSFVRIVVVIGFLRNALSTQNVPPNQVVIA 96 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 L+LF++FY+M+P ++ E GIQP + +I++ A++ V +P FM TRE DL+LF+ Sbjct: 97 LSLFLSFYIMAPYWGQANENGIQPYLAGEISQEQALENVVDPMREFMFRQTRESDLALFV 156 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 +++ + + + + LIP+F+ISEL+ +F+IGF+I +PF++IDMIVA+ +M+M Sbjct: 157 NLSDAPRPD----GPEDVSTFTLIPAFIISELKTAFQIGFMIYIPFIVIDMIVASTLMSM 212 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMMLPP ISLPFK++ FV++DGW LL+++L+ SF Sbjct: 213 GMMMLPPVMISLPFKILLFVMVDGWHLLIQSLIMSF 248 >gi|251797428|ref|YP_003012159.1| flagellar biosynthetic protein FliP [Paenibacillus sp. JDR-2] gi|247545054|gb|ACT02073.1| flagellar biosynthetic protein FliP [Paenibacillus sp. JDR-2] Length = 256 Score = 194 bits (492), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 91/194 (46%), Positives = 140/194 (72%), Gaps = 4/194 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +L+++T F R +IV +RT +G +PPN V+I LA+F+TF++M+PT + E+ + Sbjct: 65 APAILVLMTSFTRIVIVLGFVRTSLGTQQMPPNQVLIGLAMFLTFFIMAPTFSQVNEVAL 124 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 QP + +IT+T A+++ A+P FM ++TREKDL LF++ + K I + Sbjct: 125 QPYLKGEITQTVALEKAADPMKKFMISHTREKDLLLFLNYTKTEKPE----KYQDIPITV 180 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 L+P++ ISEL+ +F++GF+I +PFL+IDMIVA+ +MAMGMMMLPP ISLPFK++ FVL+ Sbjct: 181 LVPAYAISELKTAFQMGFMIFIPFLVIDMIVASTLMAMGMMMLPPVMISLPFKLLLFVLV 240 Query: 232 DGWSLLVENLVKSF 245 DGW L+V++L+ SF Sbjct: 241 DGWYLIVKSLLLSF 254 >gi|114764047|ref|ZP_01443286.1| flagellar biosynthetic protein FliP [Pelagibaca bermudensis HTCC2601] gi|114543405|gb|EAU46420.1| flagellar biosynthetic protein FliP [Roseovarius sp. HTCC2601] Length = 241 Score = 194 bits (492), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 103/245 (42%), Positives = 155/245 (63%), Gaps = 5/245 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 M R AL L+ L A ++ +++ S++ ++ + T+LS+AP + IMVT Sbjct: 1 MWRAALSALILIA--LSTAATAQELRLDLGGGGSLTATSLQLIALITLLSLAPGIAIMVT 58 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 CFP + V +ILR +G+ PPN++I+SLALF+T++VM PT + + G++PL++ +I+ Sbjct: 59 CFPFLVTVLAILRQAVGLQQSPPNMLIVSLALFLTYFVMEPTFTAAWQDGLRPLIDEEIS 118 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 ++R PF FM T D + F MA + T +LIPSFM+SE Sbjct: 119 VEEGVERTLVPFRGFMAGRT---DANTFSSMADLRPDASGETLRPEAPLSLLIPSFMLSE 175 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 + R+F++GFLI LPFLIID++VA I+M+MGMMM+PP +SLPFK+ FFV+ DGWSLL Sbjct: 176 IARAFQVGFLIFLPFLIIDLVVAAILMSMGMMMVPPAIVSLPFKLAFFVIADGWSLLAGA 235 Query: 241 LVKSF 245 LV+S+ Sbjct: 236 LVRSY 240 >gi|221214540|ref|ZP_03587510.1| flagellar biosynthetic protein FliP [Burkholderia multivorans CGD1] gi|221165430|gb|EED97906.1| flagellar biosynthetic protein FliP [Burkholderia multivorans CGD1] Length = 253 Score = 194 bits (492), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 93/206 (45%), Positives = 142/206 (68%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T + T+LS P +++M+T F R IIV S+LR +G + PPN V++ LALF+TF+VM Sbjct: 51 VQTMLLLTMLSFLPAMVLMMTSFTRIIIVLSLLRQALGTATTPPNQVLVGLALFLTFFVM 110 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP LDR+ G +P + + A+QR PF FM TRE DL+LF ++ ++ Sbjct: 111 SPVLDRAYTDGYKPFSDGTLPMEQAVQRGVAPFKGFMLKQTRETDLALFAKISKAA---- 166 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + +L+P+F+ SEL+ F+IGF I +PFLIIDM+VA+++M+MGMMM+ P+++ Sbjct: 167 PMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPSTV 226 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 227 SLPFKLMLFVLVDGWQLLIGSLAQSF 252 >gi|312172107|emb|CBX80364.1| Flagellar biosynthetic protein FliP precursor [Erwinia amylovora ATCC BAA-2158] Length = 245 Score = 194 bits (492), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 101/240 (42%), Positives = 157/240 (65%), Gaps = 9/240 (3%) Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRF 65 ALF++ P V+A+ L +++ P +W V+T T L+ P +L+M+T F R Sbjct: 11 ALFMLAPN-VYAQ--LPGLISQPTANGGQSWSLPVQTLVFITSLTFLPAILLMMTSFTRI 67 Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 IIVF +LR +G S PPN V++ L+LF+TF++M P D+ QP ++I+ AI Sbjct: 68 IIVFGLLRNALGTPSAPPNQVLLGLSLFLTFFIMGPVFDKIYTDAYQPFSEDKISMQEAI 127 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185 + A+P FM TRE DL+LF +A++ I + + RIL+P+++ SEL+ +F Sbjct: 128 DKGAQPLREFMLRQTREADLALFARLANTP----PIAGPEAVPMRILLPAYVTSELKTAF 183 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +IGF + +PFLIID++VA+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 184 QIGFTVFIPFLIIDLVVASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVSSLAQSF 243 >gi|221201779|ref|ZP_03574816.1| flagellar biosynthetic protein FliP [Burkholderia multivorans CGD2M] gi|221207716|ref|ZP_03580724.1| flagellar biosynthetic protein FliP [Burkholderia multivorans CGD2] gi|221172562|gb|EEE05001.1| flagellar biosynthetic protein FliP [Burkholderia multivorans CGD2] gi|221178199|gb|EEE10609.1| flagellar biosynthetic protein FliP [Burkholderia multivorans CGD2M] Length = 253 Score = 194 bits (492), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 93/206 (45%), Positives = 142/206 (68%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T + T+LS P +++M+T F R IIV S+LR +G + PPN V++ LALF+TF+VM Sbjct: 51 VQTMLLLTMLSFLPAMVLMMTSFTRIIIVLSLLRQALGTATTPPNQVLVGLALFLTFFVM 110 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP LDR+ G +P + + A+QR PF FM TRE DL+LF ++ ++ Sbjct: 111 SPVLDRAYTDGYKPFSDGTLPMEQAVQRGVAPFKGFMLKQTRETDLALFAKISKAA---- 166 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + +L+P+F+ SEL+ F+IGF I +PFLIIDM+VA+++M+MGMMM+ P+++ Sbjct: 167 PMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPSTV 226 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 227 SLPFKLMLFVLVDGWQLLIGSLAQSF 252 >gi|148266209|ref|YP_001232915.1| flagellar biosynthesis protein FliP [Geobacter uraniireducens Rf4] gi|146399709|gb|ABQ28342.1| flagellar biosynthetic protein FliP [Geobacter uraniireducens Rf4] Length = 251 Score = 194 bits (492), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 94/216 (43%), Positives = 144/216 (66%), Gaps = 7/216 (3%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 PAD+++ +++ F + T+LS+AP LL+M T F R ++V S LR +G P N +II Sbjct: 42 PADVAV---VLQIFFLMTVLSLAPGLLMMTTSFTRIVVVLSFLRNAIGTQQAPSNQIIIG 98 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 L+LF+TF++M+P + +QP I++ A +R P FM + REKDL+LF+ Sbjct: 99 LSLFLTFFIMAPVWQQINTQALQPYKAQTISQEEAFKRAVAPVRKFMLSQVREKDLALFL 158 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 ++ D I LIP++M+SEL+ +F+IGFL+ +PFL++DM+VA+++M+M Sbjct: 159 SLSKLPRPK----NADDIPTLTLIPAYMVSELKTAFQIGFLVFIPFLVLDMVVASVLMSM 214 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMMLPP ISLPFK++ FVL+DGW L++ +LVKSF Sbjct: 215 GMMMLPPVMISLPFKILLFVLVDGWGLVIGSLVKSF 250 >gi|215487148|ref|YP_002329579.1| flagellar biosynthesis protein FliP [Escherichia coli O127:H6 str. E2348/69] gi|215265220|emb|CAS09610.1| flagellar biosynthesis protein FliP [Escherichia coli O127:H6 str. E2348/69] Length = 245 Score = 194 bits (492), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 102/239 (42%), Positives = 157/239 (65%), Gaps = 9/239 (3%) Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66 L+LVTP L FA+ L + + P +W V+T T L+ P +L+M+T F R I Sbjct: 12 LWLVTP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A++ Sbjct: 69 IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 + A+P FM TRE DL +F +A++ + + + RIL+P+++ SEL+ +F+ Sbjct: 129 KGAQPLREFMLRQTREADLGVFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQ 184 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243 >gi|312173310|emb|CBX81565.1| Flagellar biosynthetic protein FliP precursor [Erwinia amylovora ATCC BAA-2158] Length = 247 Score = 193 bits (491), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 92/206 (44%), Positives = 142/206 (68%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T + + L+ P +L+M+T F R IIV ++R +G + PPN V++ LALF+TFYVM Sbjct: 44 VQTLVLLSSLTFLPAILLMMTGFTRIIIVLGLMRNALGTPTAPPNQVLVGLALFLTFYVM 103 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP ++ E QPL ++IT A+++ +P FM + TRE DL++F MA + Sbjct: 104 SPVFNQIYEQAWQPLQEDKITMEVALEQGVKPLRAFMLDQTRENDLAMFAQMAKAG---- 159 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + IL+P+F+ SEL+ +F+IGF I +PFLIID++VA+I+MA+GMMM+PP +I Sbjct: 160 EFKGPEEVPLGILVPAFVTSELKTAFQIGFTIFIPFLIIDLVVASILMALGMMMVPPATI 219 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 +LPFK++ FVL+DGW LL+ +L +SF Sbjct: 220 ALPFKLMLFVLVDGWQLLMGSLAQSF 245 >gi|170769417|ref|ZP_02903870.1| flagellar biosynthetic protein FliP [Escherichia albertii TW07627] gi|170121741|gb|EDS90672.1| flagellar biosynthetic protein FliP [Escherichia albertii TW07627] Length = 245 Score = 193 bits (491), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 103/238 (43%), Positives = 157/238 (65%), Gaps = 9/238 (3%) Query: 10 FLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFII 67 +LVTP L FA+ L + + P +W V+T T L+ P +L+M+T F R II Sbjct: 13 WLVTP-LTFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIII 69 Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127 VF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A+++ Sbjct: 70 VFGLLRNALGTLSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALEK 129 Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187 A+P FM TRE DL+LF +A+S + + + RIL+P+++ SEL+ +F+I Sbjct: 130 GAQPLREFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSELKTAFQI 185 Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 186 GFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243 >gi|154686052|ref|YP_001421213.1| flagellar biosynthesis protein FliP [Bacillus amyloliquefaciens FZB42] gi|154351903|gb|ABS73982.1| FliP [Bacillus amyloliquefaciens FZB42] Length = 221 Score = 193 bits (491), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 95/218 (43%), Positives = 150/218 (68%), Gaps = 7/218 (3%) Query: 28 NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87 N P ++S + V+ + T+ S+AP +LI++TCF R +IV S +RT + ++PPN V+ Sbjct: 11 NSPTEVSST---VKLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATQNMPPNQVL 67 Query: 88 ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147 I LALF+TF++M+PT + + PLM+N+I+ A + +P +M +TR+KDL+L Sbjct: 68 IGLALFLTFFIMAPTFSEINKEALTPLMDNKISLDEAYTKAEKPIKEYMSKHTRQKDLAL 127 Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 FM+ A + I ++P++ ISEL+ +F++GF+I +PFLIIDM+VA+++M Sbjct: 128 FMNYAKMKKPESI----QDIPLTTMVPAYAISELKTAFQMGFMIFIPFLIIDMVVASVLM 183 Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MGMMMLPP ISLPFK++ FVL+DGW L+V++L+ SF Sbjct: 184 SMGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLLDSF 221 >gi|206889470|ref|YP_002249866.1| flagellar biosynthetic protein FliP [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741408|gb|ACI20465.1| flagellar biosynthetic protein FliP [Thermodesulfovibrio yellowstonii DSM 11347] Length = 335 Score = 193 bits (491), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 105/242 (43%), Positives = 155/242 (64%), Gaps = 12/242 (4%) Query: 6 FFALFLVTPELVFA--KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63 F L +++P L FA +S+ + + + I +I T+LS P +LIM+T F Sbjct: 103 FSCLLILSPTLCFAAPQSAQGGLFGFSSAIDILVFI-------TLLSFLPAVLIMMTSFT 155 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 R +IV S+LR +G SVPPN VII LALF+T ++MSPT+DR PL +I Sbjct: 156 RIVIVLSLLRQALGTPSVPPNQVIIGLALFLTLFIMSPTVDRVYNEAYLPLSKKEINMEE 215 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 AI + + PF FM TREKDL+LF ++ + + T D + +I++P+F + EL+R Sbjct: 216 AISKASVPFKEFMLKQTREKDLALFFKLSKTEVKPA--TPMD-LPMKIVVPAFALGELKR 272 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 +FEIGFLI LPFL+ID++VA+I+++MGM M+PP IS+PFK++ FVL+DGW L++ +L Sbjct: 273 AFEIGFLIFLPFLVIDIVVASILLSMGMFMVPPVMISMPFKLLLFVLVDGWQLIIGSLAG 332 Query: 244 SF 245 F Sbjct: 333 GF 334 >gi|254466138|ref|ZP_05079549.1| flagellar biosynthetic protein FliP [Rhodobacterales bacterium Y4I] gi|206687046|gb|EDZ47528.1| flagellar biosynthetic protein FliP [Rhodobacterales bacterium Y4I] Length = 247 Score = 193 bits (491), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 96/212 (45%), Positives = 137/212 (64%), Gaps = 3/212 (1%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 S+S ++ + T+LS+AP LLIM+TCFP + V SILR G+G+ PPN+++ISLALF Sbjct: 37 SVSARSIQLILLITVLSLAPGLLIMITCFPFLVTVLSILRQGIGLQQAPPNMLMISLALF 96 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 +T++VM P + GI PL+ Q+ AI R EPF FM N D F +A Sbjct: 97 LTYFVMEPVFTEAWNSGISPLLEEQLEPGEAISRSLEPFRAFMANRL---DPDTFYAIAD 153 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 + L+PSF++SE+ R+F+IGFL+ LPFL+ID++VA ++M+MGMMM Sbjct: 154 LRPETQGMDPVPQAPLSALVPSFLLSEIARAFQIGFLVFLPFLVIDLVVAAVLMSMGMMM 213 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PP +SLPFK+ FFV+ DGWSL+ LV+S+ Sbjct: 214 VPPAIVSLPFKLAFFVVADGWSLIATALVRSY 245 >gi|324114209|gb|EGC08182.1| flagellar biosynthetic protein FliP [Escherichia fergusonii B253] Length = 245 Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 102/239 (42%), Positives = 156/239 (65%), Gaps = 9/239 (3%) Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66 L+LVTP A + L ++ P +W V+T T L+ P +L+M+T F R I Sbjct: 12 LWLVTP---CALAQLPGLVTQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A++ Sbjct: 69 IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 + A+P FM TRE DL+LF +A++ I + + RIL+P+++ SEL+ +F+ Sbjct: 129 KGAQPLREFMLRQTREADLALFARLANTG----PIQGPEVVPMRILLPAYVTSELKTAFQ 184 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243 >gi|293410304|ref|ZP_06653880.1| flagellar biosynthetic protein FliP [Escherichia coli B354] gi|291470772|gb|EFF13256.1| flagellar biosynthetic protein FliP [Escherichia coli B354] Length = 245 Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 102/239 (42%), Positives = 157/239 (65%), Gaps = 9/239 (3%) Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66 L+L+TP L FA+ L + + P +W V+T T L+ P +L+M+T F R I Sbjct: 12 LWLITP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A++ Sbjct: 69 IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 + A+P FM TRE DL LF +A++ + + + RIL+P+++ SEL+ +F+ Sbjct: 129 KGAQPLREFMLRQTREADLGLFARLANTG----PLLGPEAVPMRILLPAYVTSELKTAFQ 184 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243 >gi|161523220|ref|YP_001578232.1| flagellar biosynthesis protein FliP [Burkholderia multivorans ATCC 17616] gi|189348923|ref|YP_001944551.1| flagellar biosynthesis protein FliP [Burkholderia multivorans ATCC 17616] gi|160340649|gb|ABX13735.1| flagellar biosynthetic protein FliP [Burkholderia multivorans ATCC 17616] gi|189332945|dbj|BAG42015.1| flagellar biosynthetic protein [Burkholderia multivorans ATCC 17616] Length = 253 Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 93/206 (45%), Positives = 142/206 (68%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T + T+LS P +++M+T F R IIV S+LR +G + PPN V++ LALF+TF+VM Sbjct: 51 VQTMLLLTMLSFLPAMVLMMTSFTRIIIVLSLLRQALGTATTPPNQVLVGLALFLTFFVM 110 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP LDR+ G +P + + A+QR PF FM TRE DL+LF ++ ++ Sbjct: 111 SPVLDRAYTDGYKPFSDGTLPMEQAVQRGVAPFKGFMLKQTRETDLALFAKISKAA---- 166 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + +L+P+F+ SEL+ F+IGF I +PFLIIDM+VA+++M+MGMMM+ P+++ Sbjct: 167 PMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPSTV 226 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 227 SLPFKLMLFVLVDGWQLLIGSLAQSF 252 >gi|205352327|ref|YP_002226128.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272108|emb|CAR36961.1| flagellar biosynthetic protein flip precursor [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326627377|gb|EGE33720.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 245 Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 99/240 (41%), Positives = 155/240 (64%), Gaps = 9/240 (3%) Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRF 65 L+L +P A + L +++ P +W + +T T L+ P +L+M+T F R Sbjct: 11 GLWLFSPA---AAAQLPGLISQPLAGGGQSWSLSAQTLVFITSLTFLPAILLMMTSFTRI 67 Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A+ Sbjct: 68 IIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQKISMQEAL 127 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185 + A+P FM TRE DL+LF +A+S + + + RIL+P+++ SEL+ +F Sbjct: 128 DKGAQPLRAFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSELKTAF 183 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 184 QIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243 >gi|126665005|ref|ZP_01735988.1| flagellar biosynthetic protein FliP [Marinobacter sp. ELB17] gi|126630375|gb|EBA00990.1| flagellar biosynthetic protein FliP [Marinobacter sp. ELB17] Length = 259 Score = 193 bits (491), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 91/206 (44%), Positives = 141/206 (68%), Gaps = 5/206 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + T L+ P +L+M+T F R IIVFSILR +G+ S P N +++ LALF+T ++M Sbjct: 57 LQILALMTALTFLPAMLMMMTSFTRIIIVFSILRQALGLQSAPSNQILLGLALFLTIFIM 116 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P L+ + +G+QP + ++T A++ +EPF FM TRE DL LFM MA + Sbjct: 117 KPVLEEANRVGLQPYLQEELTSLEAVEAASEPFKQFMLAQTRESDLGLFMRMA-----DE 171 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + +L+P+F+ SEL+ +F+IGF++ +PFLIIDM+VA+++MAMGMMML P I Sbjct: 172 QFASPEDVTFWVLLPAFVTSELKTAFQIGFILFIPFLIIDMVVASVLMAMGMMMLSPIII 231 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW+L++ L S+ Sbjct: 232 SLPFKIMLFVLVDGWALIMGTLAASY 257 >gi|16765317|ref|NP_460932.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167993554|ref|ZP_02574648.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|1706856|sp|P54700|FLIP_SALTY RecName: Full=Flagellar biosynthetic protein fliP; Flags: Precursor gi|1066863|gb|AAB81319.1| fliP [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16420514|gb|AAL20891.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205328373|gb|EDZ15137.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261247145|emb|CBG24968.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993968|gb|ACY88853.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158493|emb|CBW18003.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912969|dbj|BAJ36943.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224624|gb|EFX49687.1| Flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323130258|gb|ADX17688.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988868|gb|AEF07851.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 245 Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 99/240 (41%), Positives = 155/240 (64%), Gaps = 9/240 (3%) Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRF 65 L+L +P A + L +++ P +W V+T T L+ P +L+M+T F R Sbjct: 11 GLWLFSPA---AAAQLPGLISQPLAGGGQSWSLSVQTLVFITSLTFLPAILLMMTSFTRI 67 Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A+ Sbjct: 68 IIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQKISMQEAL 127 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185 + A+P FM TRE DL+LF +A+S + + + RIL+P+++ SEL+ +F Sbjct: 128 DKGAQPLRAFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSELKTAF 183 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LL+ +L +SF Sbjct: 184 QIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLMGSLAQSF 243 >gi|331006679|ref|ZP_08329957.1| Flagellar biosynthesis protein fliP [gamma proteobacterium IMCC1989] gi|330419511|gb|EGG93899.1| Flagellar biosynthesis protein fliP [gamma proteobacterium IMCC1989] Length = 280 Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 94/199 (47%), Positives = 137/199 (68%), Gaps = 4/199 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T L+ P +LIM+T F R IIVF+ILR +G+ P N ++I + LF+T ++M+P ++ Sbjct: 84 TTLTFIPAILIMMTSFTRIIIVFAILRQALGLQQSPSNQILIGMTLFLTLFIMTPVINEV 143 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 E +QP + QIT AI +V EPF FM TRE DL LFMD+A+ +T + Sbjct: 144 NEQALQPYIAEQITSDQAIDKVIEPFHRFMIGQTRESDLKLFMDIANVPAVDT----REE 199 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 + +LIPSF+ SEL+ +F+IGF++ +PFL+ID++VA+++MAMGMMML P ISLPFK++ Sbjct: 200 VPLTVLIPSFITSELKTAFQIGFILFIPFLVIDLVVASVLMAMGMMMLSPLIISLPFKIM 259 Query: 227 FFVLIDGWSLLVENLVKSF 245 FVL+DGW++L+ L SF Sbjct: 260 LFVLVDGWAMLMGTLAASF 278 >gi|237755394|ref|ZP_04584021.1| flagellar biosynthetic protein FliP [Sulfurihydrogenibium yellowstonense SS-5] gi|237692435|gb|EEP61416.1| flagellar biosynthetic protein FliP [Sulfurihydrogenibium yellowstonense SS-5] Length = 338 Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 101/196 (51%), Positives = 138/196 (70%), Gaps = 5/196 (2%) Query: 50 SIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEM 109 SIAP LLI VT F R +IV S+LR +G+ + PPN VI+ LALF+T +VM PT ++ E+ Sbjct: 147 SIAPALLISVTAFVRIVIVLSLLRHALGIPTAPPNQVIVGLALFLTIFVMKPTFEKINEV 206 Query: 110 GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169 I P + QI++ AI+ EP FM NTR++DL LF+D+A+ ++ D I Sbjct: 207 SISPYLKKQISDIQAIENAKEPLKEFMLKNTRKEDLKLFLDLANEK----PLSPKD-ISI 261 Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229 LIP+FMISE++ +FEI F+I LPFL+ID IVA+I+M+MGMMM+PP ISLPFK++ FV Sbjct: 262 STLIPAFMISEIKTAFEIVFIIYLPFLVIDFIVASILMSMGMMMIPPMFISLPFKLMLFV 321 Query: 230 LIDGWSLLVENLVKSF 245 L DG+ LLV+ LV S+ Sbjct: 322 LADGFELLVKALVSSY 337 >gi|295097216|emb|CBK86306.1| flagellar biosynthetic protein FliP [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 247 Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 92/193 (47%), Positives = 136/193 (70%), Gaps = 4/193 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +L+M+T F R +IV ++R +G + PPN V++ LALF+TF+VMSP L++ E Q Sbjct: 57 PAVLLMMTGFTRIVIVLGLMRNALGTPTAPPNQVLVGLALFLTFFVMSPVLNQIYEQAWQ 116 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 PL N+IT TA++ +P FM TRE DL++F +A + +T + + IL Sbjct: 117 PLQANKITMETALKEGVKPLRAFMLEQTREADLAMFARIA----KTPTLTGPEDVPLSIL 172 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 +PSF+ SEL+ +F+IGF I +PFLIID++VA+I+MA+GMMM+PP +I+LPFK++ FVL+D Sbjct: 173 VPSFVTSELKTAFQIGFTIFIPFLIIDLVVASILMALGMMMVPPATIALPFKLMLFVLVD 232 Query: 233 GWSLLVENLVKSF 245 GW LLV +L +SF Sbjct: 233 GWQLLVGSLAQSF 245 >gi|171316887|ref|ZP_02906096.1| flagellar biosynthetic protein FliP [Burkholderia ambifaria MEX-5] gi|171097968|gb|EDT42786.1| flagellar biosynthetic protein FliP [Burkholderia ambifaria MEX-5] Length = 253 Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 92/206 (44%), Positives = 142/206 (68%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T + T+LS P +L+M+T F R IIV S+LR +G + PPN V++ LA+F+TF+VM Sbjct: 51 VQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQALGTATTPPNQVLVGLAMFLTFFVM 110 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP LDR+ G +P + + A++R PF FM TRE DL+LF ++ ++ Sbjct: 111 SPVLDRAYADGYKPFSDGSMPMEQAVRRGVAPFKTFMLKQTRETDLALFAKISKAA---- 166 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + +L+P+F+ SEL+ F+IGF I +PFLIIDM+VA+++M+MGMMM+ P+++ Sbjct: 167 PMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPSTV 226 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 227 SLPFKLMLFVLVDGWQLLIGSLAQSF 252 >gi|172059104|ref|YP_001806756.1| flagellar biosynthesis protein FliP [Burkholderia ambifaria MC40-6] gi|171991621|gb|ACB62540.1| flagellar biosynthetic protein FliP [Burkholderia ambifaria MC40-6] Length = 253 Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 92/206 (44%), Positives = 142/206 (68%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T + T+LS P +L+M+T F R IIV S+LR +G + PPN V++ LA+F+TF+VM Sbjct: 51 VQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQALGTATTPPNQVLVGLAMFLTFFVM 110 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP LDR+ G +P + + A++R PF FM TRE DL+LF ++ ++ Sbjct: 111 SPVLDRAYADGYKPFSDGSMPMEQAVRRGVAPFKTFMLKQTRETDLALFAKISKAA---- 166 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + +L+P+F+ SEL+ F+IGF I +PFLIIDM+VA+++M+MGMMM+ P+++ Sbjct: 167 PMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPSTV 226 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 227 SLPFKLMLFVLVDGWQLLIGSLAQSF 252 >gi|254251034|ref|ZP_04944352.1| Flagellar transport protein FliP [Burkholderia dolosa AUO158] gi|124893643|gb|EAY67523.1| Flagellar transport protein FliP [Burkholderia dolosa AUO158] Length = 253 Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 92/206 (44%), Positives = 142/206 (68%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T + T+LS P +L+M+T F R IIV S+LR +G + PPN V++ LA+F+TF+VM Sbjct: 51 VQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQALGTATTPPNQVLVGLAMFLTFFVM 110 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP LD++ G +P + + A+QR PF FM TRE DL+LF ++ ++ Sbjct: 111 SPVLDKAYTDGYKPFSDGAMPMEQAVQRGVAPFKSFMLKQTRETDLALFAKISKAA---- 166 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + +L+P+F+ SEL+ F+IGF I +PFLIIDM+VA+++M+MGMMM+ P+++ Sbjct: 167 PMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPSTV 226 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 227 SLPFKLMLFVLVDGWQLLIGSLAQSF 252 >gi|115350085|ref|YP_771924.1| flagellar biosynthesis protein FliP [Burkholderia ambifaria AMMD] gi|115280073|gb|ABI85590.1| flagellar biosynthetic protein FliP [Burkholderia ambifaria AMMD] Length = 253 Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 92/206 (44%), Positives = 142/206 (68%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T + T+LS P +L+M+T F R IIV S+LR +G + PPN V++ LA+F+TF+VM Sbjct: 51 VQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQALGTATTPPNQVLVGLAMFLTFFVM 110 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP LDR+ G +P + + A++R PF FM TRE DL+LF ++ ++ Sbjct: 111 SPVLDRAYADGYKPFSDGSMPMEQAVRRGVAPFKTFMLKQTRETDLALFAKISKAA---- 166 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + +L+P+F+ SEL+ F+IGF I +PFLIIDM+VA+++M+MGMMM+ P+++ Sbjct: 167 PMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPSTV 226 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 227 SLPFKLMLFVLVDGWQLLIGSLAQSF 252 >gi|222053616|ref|YP_002535978.1| flagellar biosynthetic protein FliP [Geobacter sp. FRC-32] gi|221562905|gb|ACM18877.1| flagellar biosynthetic protein FliP [Geobacter sp. FRC-32] Length = 251 Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 96/217 (44%), Positives = 147/217 (67%), Gaps = 9/217 (4%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P D+++ +++ F + T+LS+AP LL+M T F R ++V S LR +G P N +II Sbjct: 42 PGDVAV---VLQIFFLMTVLSLAPGLLMMTTSFTRIVVVLSFLRNALGTQQAPSNQIIIG 98 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 L+LF+TF++M+P + +QP IT+ A++R P FM + REKDL+LF+ Sbjct: 99 LSLFLTFFIMAPVWQQINVQALQPYRAQTITQDEALKRAVAPVRKFMLSQVREKDLALFI 158 Query: 150 DMAHSSHRNTDITKN-DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208 +++ KN D I +IP++MISEL+ +F+IGFL+ +PFL++DM+VA+++M+ Sbjct: 159 NLSKLPR-----PKNADDIPTMTIIPAYMISELKTAFQIGFLVYIPFLVLDMVVASVLMS 213 Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MGMMMLPP ISLPFK++ FVL+DGW L++ +LVKSF Sbjct: 214 MGMMMLPPVMISLPFKILLFVLVDGWGLIIGSLVKSF 250 >gi|292489152|ref|YP_003532039.1| flagellar biosynthetic protein FliP [Erwinia amylovora CFBP1430] gi|292900270|ref|YP_003539639.1| flagellar biosynthetic protein [Erwinia amylovora ATCC 49946] gi|291200118|emb|CBJ47244.1| flagellar biosynthetic protein [Erwinia amylovora ATCC 49946] gi|291554586|emb|CBA22219.1| Flagellar biosynthetic protein FliP precursor [Erwinia amylovora CFBP1430] Length = 247 Score = 192 bits (489), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 92/206 (44%), Positives = 142/206 (68%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T + + L+ P +L+M+T F R IIV ++R +G + PPN V++ LALF+TFYVM Sbjct: 44 VQTLVLLSSLTFLPAILLMMTGFTRIIIVLGLMRNALGTPTSPPNQVLVGLALFLTFYVM 103 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP ++ E QPL ++IT A+++ +P FM + TRE DL++F MA + Sbjct: 104 SPVFNQIYEQAWQPLQEDKITMEVALEQGVKPLRAFMLDQTRENDLAMFAQMAKAG---- 159 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + IL+P+F+ SEL+ +F+IGF I +PFLIID++VA+I+MA+GMMM+PP +I Sbjct: 160 EFKGPEEVPLGILVPAFVTSELKTAFQIGFTIFIPFLIIDLVVASILMALGMMMVPPATI 219 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 +LPFK++ FVL+DGW LL+ +L +SF Sbjct: 220 ALPFKLMLFVLVDGWQLLMGSLAQSF 245 >gi|149188095|ref|ZP_01866390.1| flagellar biosynthesis protein P [Vibrio shilonii AK1] gi|148838083|gb|EDL55025.1| flagellar biosynthesis protein P [Vibrio shilonii AK1] Length = 287 Score = 192 bits (489), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 97/214 (45%), Positives = 144/214 (67%), Gaps = 8/214 (3%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D SI+ I+ + T+L P ++I++T F R ++V SILR MG+ P N VII +A Sbjct: 80 DYSINLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 136 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 +F+TF++MSP L++ + IQP +N QIT A Q+ P FM TR KDL F++M Sbjct: 137 IFLTFFIMSPVLNQVNDQAIQPYLNEQITAKEAFQQAQGPMKSFMLKQTRVKDLETFVEM 196 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + S+ +N + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+I+MAMGM Sbjct: 197 SGSTAQNPE-----DVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASILMAMGM 251 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 252 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 285 >gi|260429128|ref|ZP_05783105.1| flagellar biosynthetic protein FliP [Citreicella sp. SE45] gi|260419751|gb|EEX13004.1| flagellar biosynthetic protein FliP [Citreicella sp. SE45] Length = 242 Score = 192 bits (489), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 95/219 (43%), Positives = 143/219 (65%), Gaps = 3/219 (1%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 +N+ S++ ++ + T+LS+AP + IMVTCFP + V SILR +G+ PPN++ Sbjct: 26 LNLGEGGSVTAASLQLIALITLLSLAPGIAIMVTCFPFLVTVLSILRQAIGLQQSPPNML 85 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 I+SLALF+T++VM P + G+ PL++ QI A +R EPF FM + Sbjct: 86 IVSLALFLTYFVMEPVFTEAWTNGVAPLLDEQIEAREAFERTLEPFRGFMATRIDPDTFA 145 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 D+ R T++ + +L+PSFM+SE+ R+F++GFLI LPFLIID++VA ++ Sbjct: 146 NIADL-RPDARGTELDPGAPLS--LLVPSFMLSEIARAFQVGFLIFLPFLIIDLVVAAVL 202 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+MGMMM+PP +SLPFK+ FFV+ DGWSLL +LV+S+ Sbjct: 203 MSMGMMMVPPAIVSLPFKLAFFVIADGWSLLAGSLVRSY 241 >gi|148380606|ref|YP_001255147.1| flagellar biosynthetic protein FliP [Clostridium botulinum A str. ATCC 3502] gi|153933100|ref|YP_001384893.1| flagellar biosynthesis protein FliP [Clostridium botulinum A str. ATCC 19397] gi|153936309|ref|YP_001388362.1| flagellar biosynthesis protein FliP [Clostridium botulinum A str. Hall] gi|168180927|ref|ZP_02615591.1| flagellar biosynthetic protein FliP [Clostridium botulinum NCTC 2916] gi|168182731|ref|ZP_02617395.1| flagellar biosynthetic protein FliP [Clostridium botulinum Bf] gi|226950061|ref|YP_002805152.1| flagellar biosynthetic protein FliP [Clostridium botulinum A2 str. Kyoto] gi|237796088|ref|YP_002863640.1| flagellar biosynthetic protein FliP [Clostridium botulinum Ba4 str. 657] gi|148290090|emb|CAL84209.1| putative flagellar biosynthetic protein [Clostridium botulinum A str. ATCC 3502] gi|152929144|gb|ABS34644.1| flagellar biosynthetic protein FliP [Clostridium botulinum A str. ATCC 19397] gi|152932223|gb|ABS37722.1| flagellar biosynthetic protein FliP [Clostridium botulinum A str. Hall] gi|182668360|gb|EDT80339.1| flagellar biosynthetic protein FliP [Clostridium botulinum NCTC 2916] gi|182674137|gb|EDT86098.1| flagellar biosynthetic protein FliP [Clostridium botulinum Bf] gi|226841463|gb|ACO84129.1| flagellar biosynthetic protein FliP [Clostridium botulinum A2 str. Kyoto] gi|229260888|gb|ACQ51921.1| flagellar biosynthetic protein FliP [Clostridium botulinum Ba4 str. 657] Length = 258 Score = 192 bits (489), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 96/199 (48%), Positives = 140/199 (70%), Gaps = 4/199 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T+L++ P ++M+T F R I+VF LR MG PPN V+I LALF+T ++M P Sbjct: 63 TVLTLLPSFIVMMTSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEI 122 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 IQP M N+IT+ A++ A+P FM TR+KDL LF+++A N +TK++ Sbjct: 123 NTKAIQPYMKNKITQEQAVEIGAKPLRQFMLKQTRQKDLKLFVELAKP---NFKVTKDNA 179 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 Y I++P+F+ISEL+ +F+IGFL+ +PFLIID++VA+++M+MGM MLPP ISLPFK++ Sbjct: 180 PLY-IVVPAFIISELKTAFQIGFLLFIPFLIIDLVVASVLMSMGMFMLPPVMISLPFKLL 238 Query: 227 FFVLIDGWSLLVENLVKSF 245 FV++DGW LLV++LV SF Sbjct: 239 LFVMVDGWYLLVKSLVMSF 257 >gi|134294170|ref|YP_001117905.1| flagellar biosynthesis protein FliP [Burkholderia vietnamiensis G4] gi|134137327|gb|ABO53070.1| flagellar biosynthetic protein FliP [Burkholderia vietnamiensis G4] Length = 253 Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 96/235 (40%), Positives = 152/235 (64%), Gaps = 7/235 (2%) Query: 14 PELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70 P L A+++ N P + + V+T + T+LS P +L+M+T F R IIV S Sbjct: 22 PALACAQAAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTRIIIVLS 81 Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130 +LR +G + PPN V++ LA+F+TF+VMSP LD++ G +P + + A+QR Sbjct: 82 LLRQALGTATTPPNQVLLGLAMFLTFFVMSPVLDKAYNDGYKPFSDGSLPMEQAVQRGVA 141 Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190 PF FM TRE DL+LF ++ ++ + + + +L+P+F+ SEL+ F+IGF Sbjct: 142 PFKGFMLKQTRETDLALFAKISKAA----PMQGPEDVPLSLLVPAFVTSELKTGFQIGFT 197 Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 I +PFLIID++VA+++M+MGMMM+ P+++SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 198 IFIPFLIIDLVVASVLMSMGMMMVSPSTVSLPFKLMLFVLVDGWQLLIGSLAQSF 252 >gi|170755849|ref|YP_001782265.1| flagellar biosynthesis protein FliP [Clostridium botulinum B1 str. Okra] gi|169121061|gb|ACA44897.1| flagellar biosynthetic protein FliP [Clostridium botulinum B1 str. Okra] Length = 258 Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 96/199 (48%), Positives = 139/199 (69%), Gaps = 4/199 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T+L++ P ++M+T F R I+VF LR MG PPN V+I LALF+T ++M P Sbjct: 63 TVLTLLPSFIVMMTSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEI 122 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 IQP M N+I + A++ A+P FM TR+KDL LF+D+A N +TK++ Sbjct: 123 NTKAIQPYMKNKINQEQAVEIGAKPLRQFMLKQTRQKDLKLFVDLAKP---NFKVTKDNA 179 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 Y I++P+F+ISEL+ +F+IGFL+ +PFLIID++VA+++M+MGM MLPP ISLPFK++ Sbjct: 180 PLY-IVVPAFIISELKTAFQIGFLLFIPFLIIDLVVASVLMSMGMFMLPPVMISLPFKLL 238 Query: 227 FFVLIDGWSLLVENLVKSF 245 FV++DGW LLV++LV SF Sbjct: 239 LFVMVDGWYLLVKSLVMSF 257 >gi|15615005|ref|NP_243308.1| flagellar biosynthesis protein FliP [Bacillus halodurans C-125] gi|10175062|dbj|BAB06161.1| flagellar protein required for flagellar formation [Bacillus halodurans C-125] Length = 233 Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 94/194 (48%), Positives = 139/194 (71%), Gaps = 4/194 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +LI++TCF R +IV S +RTG+ ++PPN VII +ALF+TF++M+P + + Sbjct: 43 APSILILMTCFTRVVIVLSFVRTGLATQTMPPNQVIIGIALFITFFIMAPVFAEVNDQAL 102 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 P ++ +I + A+ R A P FM +TREKDL+LFM ++ H + ++ I Sbjct: 103 TPFLDGEIDQQEAMDRAAIPMKEFMAKHTREKDLALFM--GYAGHDRPESIED--IPLTA 158 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 L+P+F ISEL+ +F+IGFLI +PFL+IDMIVA+++M+MGMMMLPP ISLPFK++ FVL+ Sbjct: 159 LVPAFAISELKTAFQIGFLIFIPFLVIDMIVASVLMSMGMMMLPPIMISLPFKILLFVLV 218 Query: 232 DGWSLLVENLVKSF 245 DGW L+V++L+ SF Sbjct: 219 DGWYLVVQSLLLSF 232 >gi|307131599|ref|YP_003883615.1| flagellar biosynthesis protein fliP [Dickeya dadantii 3937] gi|306529128|gb|ADM99058.1| Flagellar biosynthesis protein fliP [Dickeya dadantii 3937] Length = 258 Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 100/248 (40%), Positives = 161/248 (64%), Gaps = 10/248 (4%) Query: 1 MIRYCFFA-LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLI 57 ++RY + L L+ P A + L +++ P +W ++T T LS P +L+ Sbjct: 16 LLRYPAASILLLIAPH---ALAQLPGIISQPLANGGQSWSLPIQTLVFITSLSFIPAVLL 72 Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 M+TCF R IIV S+LR +G + PPN V++ L+LF+TF+VMSP L+R + +P + Sbjct: 73 MMTCFTRIIIVLSLLRNALGTPTAPPNQVLLGLSLFLTFFVMSPVLNRIYDEAYRPFSED 132 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177 +I+ AI++ ++P FM TRE DL+LF +A + + + R+L+P+++ Sbjct: 133 KISMEVAIEKGSQPLREFMLRQTREADLALFTRLAQIP----SLQGPEAVPMRVLVPAYV 188 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 SEL+ +F+IGF I +PFL+ID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL Sbjct: 189 TSELKTAFQIGFTIFIPFLLIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLL 248 Query: 238 VENLVKSF 245 + +L +SF Sbjct: 249 LGSLAQSF 256 >gi|213612735|ref|ZP_03370561.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 206 Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 93/206 (45%), Positives = 141/206 (68%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T T L+ P +L+M+T F R IIVF +LR +G S PPN V++ LALF+TF++M Sbjct: 3 VQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIM 62 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP +D+ QP +I+ A+ + A+P FM TRE DL+LF +A+S Sbjct: 63 SPVIDKIYVDAYQPFSEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSG---- 118 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + RIL+P+++ SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I Sbjct: 119 PLQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATI 178 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 +LPFK++ FVL+DGW LLV +L +SF Sbjct: 179 ALPFKLMLFVLVDGWQLLVGSLAQSF 204 >gi|138894755|ref|YP_001125208.1| flagellar biosynthesis protein FliP [Geobacillus thermodenitrificans NG80-2] gi|196247623|ref|ZP_03146325.1| flagellar biosynthetic protein FliP [Geobacillus sp. G11MC16] gi|134266268|gb|ABO66463.1| Flagellar protein [Geobacillus thermodenitrificans NG80-2] gi|196212407|gb|EDY07164.1| flagellar biosynthetic protein FliP [Geobacillus sp. G11MC16] Length = 222 Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 96/195 (49%), Positives = 139/195 (71%), Gaps = 4/195 (2%) Query: 51 IAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMG 110 IAP +LIM+TCF R +IV S +RT +G +PPN V+I LALF+TF++M+PT + Sbjct: 31 IAPGILIMMTCFTRIVIVLSFVRTSLGTQQMPPNQVLIGLALFLTFFIMAPTWKDINDQA 90 Query: 111 IQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYR 170 +QPL +I A +R A P FM +TR++DL+LF+ + + T ND I Sbjct: 91 LQPLFAEKIDLDEAYERAAIPLKQFMSKHTRQQDLALFLSYSGAEQPKT---VND-IPLT 146 Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230 L+P+F ISEL+ +F++GF+I +PFL+IDMIVA+++M+MGMMMLPP ISLPFK++ FVL Sbjct: 147 ALVPAFAISELKTAFQMGFMIFIPFLVIDMIVASVLMSMGMMMLPPVMISLPFKILLFVL 206 Query: 231 IDGWSLLVENLVKSF 245 +DGW L+V++L++SF Sbjct: 207 VDGWYLVVKSLLQSF 221 >gi|157145258|ref|YP_001452577.1| flagellar biosynthesis protein FliP [Citrobacter koseri ATCC BAA-895] gi|78100273|gb|ABB20928.1| flagellar biosynthesis/transport protein [Citrobacter koseri] gi|157082463|gb|ABV12141.1| hypothetical protein CKO_00995 [Citrobacter koseri ATCC BAA-895] Length = 245 Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 100/247 (40%), Positives = 158/247 (63%), Gaps = 9/247 (3%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 ++ AL+ ++P A + L +++ P +W V+T T L+ P +L+M Sbjct: 4 LLSLTLMALWFISPA---AFAQLPGLVSQPLPGGGQSWSLPVQTLVFITSLTFLPAILLM 60 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP + Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAWQPFSEEK 120 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ A+++ A+P FM TRE DL LF +A+S + + + RIL+P+++ Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLGLFARLANSG----PLQGPEAVPMRILLPAYVT 176 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236 Query: 239 ENLVKSF 245 +L +SF Sbjct: 237 GSLAQSF 243 >gi|292487982|ref|YP_003530859.1| flagellar biosynthetic protein FliP [Erwinia amylovora CFBP1430] gi|292899202|ref|YP_003538571.1| flagellar biosynthetic protein [Erwinia amylovora ATCC 49946] gi|291199050|emb|CBJ46161.1| flagellar biosynthetic protein [Erwinia amylovora ATCC 49946] gi|291553406|emb|CBA20451.1| Flagellar biosynthetic protein FliP precursor [Erwinia amylovora CFBP1430] Length = 245 Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 100/240 (41%), Positives = 157/240 (65%), Gaps = 9/240 (3%) Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRF 65 ALF++ P V+A+ L +++ P +W V+T T L+ P +L+++T F R Sbjct: 11 ALFMLAPN-VYAQ--LPGLISQPTANGGQSWSLPVQTLVFITSLTFLPAILLLMTSFTRI 67 Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 IIVF +LR +G S PPN V++ L+LF+TF++M P D+ QP ++I+ AI Sbjct: 68 IIVFGLLRNALGTPSAPPNQVLLGLSLFLTFFIMGPVFDKIYTDAYQPFSEDKISMQEAI 127 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185 + A+P FM TRE DL+LF +A++ I + + RIL+P+++ SEL+ +F Sbjct: 128 DKGAQPLREFMLRQTREADLALFARLANTP----PIAGPEAVPMRILLPAYVTSELKTAF 183 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +IGF + +PFLIID++VA+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 184 QIGFTVFIPFLIIDLVVASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVSSLAQSF 243 >gi|170722844|ref|YP_001750532.1| flagellar biosynthesis protein FliP [Pseudomonas putida W619] gi|169760847|gb|ACA74163.1| flagellar biosynthetic protein FliP [Pseudomonas putida W619] Length = 255 Score = 192 bits (488), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 95/201 (47%), Positives = 134/201 (66%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 I T LS P +I++T F R IIVFSILR +G+ P N V+ +ALF+T ++M+P D Sbjct: 56 IMTALSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQVLTGMALFLTMFIMAPVFD 115 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 R + +QP + Q+T AI + P FM TR+ DL LFM ++ + TDI Sbjct: 116 RVNQDALQPYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDLDLFMRLS----KRTDIAGP 171 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D + IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA+++MAMGMMML P ISLPFK Sbjct: 172 DQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFK 231 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW+L++ L SF Sbjct: 232 IMLFVLVDGWALIMGTLAGSF 252 >gi|91211166|ref|YP_541152.1| flagellar biosynthesis protein FliP [Escherichia coli UTI89] gi|117624088|ref|YP_853001.1| flagellar biosynthesis protein FliP [Escherichia coli APEC O1] gi|218558805|ref|YP_002391718.1| flagellar biosynthesis protein FliP [Escherichia coli S88] gi|91072740|gb|ABE07621.1| flagellar assembly protein FliP [Escherichia coli UTI89] gi|115513212|gb|ABJ01287.1| flagellar assembly protein FliP [Escherichia coli APEC O1] gi|218365574|emb|CAR03301.1| flagellar biosynthesis protein [Escherichia coli S88] gi|294490075|gb|ADE88831.1| flagellar biosynthetic protein FliP [Escherichia coli IHE3034] gi|307626576|gb|ADN70880.1| flagellar biosynthesis protein FliP [Escherichia coli UM146] gi|323952441|gb|EGB48314.1| flagellar biosynthetic protein FliP [Escherichia coli H252] Length = 245 Score = 192 bits (488), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 102/239 (42%), Positives = 156/239 (65%), Gaps = 9/239 (3%) Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66 L+LVTP L FA+ L + + P +W V+T T L+ P +L+M+T F R I Sbjct: 12 LWLVTP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A++ Sbjct: 69 IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFNEEKISMQEALE 128 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 + +P FM TRE DL LF +A++ + + + RIL+P+++ SEL+ +F+ Sbjct: 129 KGEQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQ 184 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243 >gi|283832657|ref|ZP_06352398.1| flagellar biosynthetic protein FliP [Citrobacter youngae ATCC 29220] gi|291072331|gb|EFE10440.1| flagellar biosynthetic protein FliP [Citrobacter youngae ATCC 29220] Length = 245 Score = 192 bits (488), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 97/229 (42%), Positives = 151/229 (65%), Gaps = 6/229 (2%) Query: 19 AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 A + L +++ P +W V+T T L+ P +L+M+T F R IIVF +LR + Sbjct: 19 ALAQLPGLVSQPLPGGGQSWSLPVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNAL 78 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G S PPN V++ LALF+TF++MSP +D+ QP +I+ A+++ A+P FM Sbjct: 79 GTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEAMEKGAQPLREFM 138 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 TRE DL+LF +A+S + + + RIL+P+++ SEL+ +F+IGF I +PFL Sbjct: 139 LRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFL 194 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 195 IIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243 >gi|332756104|gb|EGJ86457.1| flagellar biosynthetic protein FliP [Shigella flexneri 4343-70] gi|333003359|gb|EGK22905.1| flagellar biosynthetic protein FliP [Shigella flexneri K-218] Length = 245 Score = 192 bits (488), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 101/239 (42%), Positives = 157/239 (65%), Gaps = 9/239 (3%) Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66 L+L+TP L FA+ L + + P +W V+T T L+ P +L+M+T F R I Sbjct: 12 LWLITP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IVF +LR +G S PPN V++ LALF+TF++MSP +++ QP +I+ A++ Sbjct: 69 IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVINKIYVDAYQPFSEEKISMQEALE 128 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 + A+P FM TRE DL LF +A++ + + + RIL+P+++ SEL+ +F+ Sbjct: 129 KGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQ 184 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243 >gi|162210056|ref|YP_331659.2| flagellar biosynthesis protein FliP [Burkholderia pseudomallei 1710b] Length = 253 Score = 192 bits (488), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 93/206 (45%), Positives = 138/206 (66%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T + T+LS P +L+M+T F R IIV S+LR +G S PPN V++ LALF+T +VM Sbjct: 51 VQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQAIGTASTPPNQVLVGLALFLTLFVM 110 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP LDR+ +P + A+QR PF FM TRE DL+LF ++ ++ Sbjct: 111 SPVLDRAYNDAYKPFSEGTLQMDQAVQRGTAPFKAFMLKQTRETDLALFAKISKAAP--- 167 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + +L+P+F+ SEL+ F+IGF I +PFLIIDM+VA+++M+MGMMM+ P ++ Sbjct: 168 -MQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATV 226 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 227 SLPFKLMLFVLVDGWQLLIGSLAQSF 252 >gi|292493587|ref|YP_003529026.1| flagellar biosynthetic protein FliP [Nitrosococcus halophilus Nc4] gi|291582182|gb|ADE16639.1| flagellar biosynthetic protein FliP [Nitrosococcus halophilus Nc4] Length = 269 Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 92/209 (44%), Positives = 141/209 (67%), Gaps = 4/209 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 T ++ G+ T L++ P ++M+T F R I+V SILR +G+ P + ++I L LF+TF Sbjct: 61 TVTLQILGLMTALTLLPAAVMMMTSFTRIIVVLSILRQALGLAQTPSSQILIGLTLFLTF 120 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 ++M P LD++ + G++P + +I+ T A+ R EPF FM TRE DL LF ++A Sbjct: 121 FIMGPVLDKAYQEGVRPYLQEEISVTEALVRTREPFRHFMMAQTRETDLQLFAEIAGQKA 180 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 + + + +L+P+F+ SEL+ +F+IGFL+ +PFLIID++VA+++MAMGMMML P Sbjct: 181 FESP----AQVPFSLLVPAFITSELKTAFQIGFLLFIPFLIIDLVVASVLMAMGMMMLSP 236 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +SLPFK++ FVLIDGWSLL+ L SF Sbjct: 237 MLVSLPFKLLLFVLIDGWSLLMGTLASSF 265 >gi|304398865|ref|ZP_07380735.1| flagellar biosynthetic protein FliP [Pantoea sp. aB] gi|308187300|ref|YP_003931431.1| Flagellar biosynthetic protein fliP [Pantoea vagans C9-1] gi|304353569|gb|EFM17946.1| flagellar biosynthetic protein FliP [Pantoea sp. aB] gi|308057810|gb|ADO09982.1| Flagellar biosynthetic protein fliP [Pantoea vagans C9-1] Length = 244 Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 93/206 (45%), Positives = 143/206 (69%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T T L+ P +L+M+T F R IIVF +LR +G S PPN V++ L+LF+TF++M Sbjct: 41 VQTLVFITALTFIPAVLLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLSLFLTFFIM 100 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +PT D+ + P ++I+ AI + A+P FM TRE DL+LF +A+++ Sbjct: 101 APTFDKIYQDAYLPFSQDKISMDVAIDKGAQPLREFMLRQTREADLALFARLANTA---- 156 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 I + + RIL+P+++ SEL+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP SI Sbjct: 157 PIAGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASI 216 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 +LPFK++ FVL+DGW LLV +L +SF Sbjct: 217 ALPFKLMLFVLVDGWQLLVGSLAQSF 242 >gi|212709502|ref|ZP_03317630.1| hypothetical protein PROVALCAL_00544 [Providencia alcalifaciens DSM 30120] gi|212687840|gb|EEB47368.1| hypothetical protein PROVALCAL_00544 [Providencia alcalifaciens DSM 30120] Length = 247 Score = 192 bits (488), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 92/193 (47%), Positives = 134/193 (69%), Gaps = 4/193 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +L+M+T F R IIV +LR +G S PPN V++ LALF+TF+VMSP D+ Q Sbjct: 57 PAMLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFVMSPVADQVYREAYQ 116 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P ++I+ TA+++ P FM TRE DL+LF +A + DI + + RIL Sbjct: 117 PFSEDKISLETALEKGTAPLRTFMLGQTRESDLALFARIA----KVGDIQEAKDVPMRIL 172 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 IP+F+ SEL+ +F+IGF I +PFLIID++VA+++MA+GMMM+PP ++SLPFK++ FVL+D Sbjct: 173 IPAFITSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVD 232 Query: 233 GWSLLVENLVKSF 245 GW LL+ +L +SF Sbjct: 233 GWQLLLGSLSQSF 245 >gi|331683500|ref|ZP_08384101.1| flagellar biosynthetic protein FliP [Escherichia coli H299] gi|331079715|gb|EGI50912.1| flagellar biosynthetic protein FliP [Escherichia coli H299] Length = 245 Score = 192 bits (487), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 101/239 (42%), Positives = 156/239 (65%), Gaps = 9/239 (3%) Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66 L+L+TP L FA+ L + + P +W V+T T L+ P +L+M+T F R I Sbjct: 12 LWLITP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A++ Sbjct: 69 IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 + +P FM TRE DL LF +A++ + + + RIL+P+++ SEL+ +F+ Sbjct: 129 KGVQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQ 184 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243 >gi|212639551|ref|YP_002316071.1| flagellar biosynthesis protein FliP [Anoxybacillus flavithermus WK1] gi|212561031|gb|ACJ34086.1| Flagellar biosynthesis pathway, component FliP [Anoxybacillus flavithermus WK1] Length = 221 Score = 192 bits (487), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 94/195 (48%), Positives = 136/195 (69%), Gaps = 4/195 (2%) Query: 51 IAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMG 110 IAP +LIMVT F R +IV S +RT +G +PPN V+I L+LF+TF++M+PT + Sbjct: 31 IAPGILIMVTSFTRIVIVLSFVRTALGTQQMPPNQVMIGLSLFLTFFIMAPTFQQINRDA 90 Query: 111 IQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYR 170 +QPL + +I A +R P FM +TR+KDL+LF+ A + T I Sbjct: 91 LQPLFDEKINLEQAYERAEAPLKEFMSKHTRQKDLALFLSYAGAEQPKT----VQDIPMS 146 Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230 L+P+F ISEL+ +F+IGF++ +PFL+IDMIVA+++M+MGMMMLPP ISLPFK++ FVL Sbjct: 147 ALVPAFAISELKTAFQIGFMLFIPFLVIDMIVASVLMSMGMMMLPPVMISLPFKILLFVL 206 Query: 231 IDGWSLLVENLVKSF 245 +DGW L+V++L++SF Sbjct: 207 VDGWYLVVKSLLESF 221 >gi|308173598|ref|YP_003920303.1| flagellar export protein [Bacillus amyloliquefaciens DSM 7] gi|307606462|emb|CBI42833.1| component of the flagellar export machinery [Bacillus amyloliquefaciens DSM 7] gi|328553470|gb|AEB23962.1| flagellar biosynthesis protein FliP [Bacillus amyloliquefaciens TA208] gi|328911739|gb|AEB63335.1| component of the flagellar export machinery [Bacillus amyloliquefaciens LL3] Length = 221 Score = 192 bits (487), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 92/206 (44%), Positives = 144/206 (69%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+ + T+ S+AP +LI++TCF R +IV S +RT + ++PPN V+I LALF+TF++M Sbjct: 20 VKLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATQNMPPNQVLIGLALFLTFFIM 79 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +PT + + PLM+N+I+ A + +P +M +TR+KDL+LFM+ A + Sbjct: 80 APTFSEINKDALTPLMDNKISLDEAYTKAEKPIKEYMSKHTRQKDLALFMNYAKMKKPES 139 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 I ++P++ ISEL+ +F++GF+I +PFLIIDM+VA+++M+MGMMMLPP I Sbjct: 140 I----QDIPLTTMVPAYAISELKTAFQMGFMIFIPFLIIDMVVASVLMSMGMMMLPPVMI 195 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW L+V++L+ SF Sbjct: 196 SLPFKILLFVLVDGWYLIVKSLLDSF 221 >gi|167813515|ref|ZP_02445195.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei 91] gi|167822057|ref|ZP_02453528.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei 9] gi|167843670|ref|ZP_02469178.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei B7210] gi|167892141|ref|ZP_02479543.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei 7894] gi|167900653|ref|ZP_02487858.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei NCTC 13177] gi|167908873|ref|ZP_02495964.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei 112] gi|167916912|ref|ZP_02504003.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei BCC215] Length = 253 Score = 192 bits (487), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 93/206 (45%), Positives = 138/206 (66%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T + T+LS P +L+M+T F R IIV S+LR +G S PPN V++ LALF+T +VM Sbjct: 51 VQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQAIGTASTPPNQVLVGLALFLTLFVM 110 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP LDR+ +P + A+QR PF FM TRE DL+LF ++ ++ Sbjct: 111 SPVLDRAYNDAYKPFSEGTLQMDQAVQRGTAPFKAFMLKQTRETDLALFAKISKAAP--- 167 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + +L+P+F+ SEL+ F+IGF I +PFLIIDM+VA+++M+MGMMM+ P ++ Sbjct: 168 -MQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATV 226 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 227 SLPFKLMLFVLVDGWQLLIGSLAQSF 252 >gi|295678047|ref|YP_003606571.1| flagellar biosynthetic protein FliP [Burkholderia sp. CCGE1002] gi|295437890|gb|ADG17060.1| flagellar biosynthetic protein FliP [Burkholderia sp. CCGE1002] Length = 269 Score = 192 bits (487), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 93/207 (44%), Positives = 140/207 (67%), Gaps = 4/207 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T + T+LS P +++M+T F R +IV S+LR +G + PPN V++ LALF+TF+VM Sbjct: 67 VQTMLLLTMLSFLPAMVLMMTSFTRIVIVLSLLRQALGTTTTPPNQVLVGLALFLTFFVM 126 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP LD++ G +P + A+ R PF FM TRE DL+LF ++H++ Sbjct: 127 SPVLDKAYNEGYKPFSEGTLPMDQAVSRGVAPFKTFMLRQTRESDLALFARISHAA---- 182 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + +L+PSF+ SEL+ F IGF I +PFLIIDM+VA+++M+MGMMM+ P +I Sbjct: 183 PMQGPEDVPLSLLVPSFVTSELKTGFTIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATI 242 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246 SLPFK++ FVL+DGW LL+ +L +SF+ Sbjct: 243 SLPFKLMLFVLVDGWQLLLGSLAQSFV 269 >gi|168186132|ref|ZP_02620767.1| flagellar biosynthetic protein FliP [Clostridium botulinum C str. Eklund] gi|169295707|gb|EDS77840.1| flagellar biosynthetic protein FliP [Clostridium botulinum C str. Eklund] Length = 257 Score = 192 bits (487), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 93/221 (42%), Positives = 151/221 (68%), Gaps = 6/221 (2%) Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84 D N P D + ++ + T++S+ P L+M+T F R I+V +R+ +G PPN Sbjct: 41 DQANSPKDYVDN---IKLLVMLTVISLLPSFLVMMTSFTRIIVVLGFMRSALGTQQAPPN 97 Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144 +++ +ALF+T ++M+PT + I+P + N+IT+T A+ ++P FM TR+KD Sbjct: 98 QILVGIALFLTIFIMAPTYKTINKEAIKPFLENKITQTEALNNASKPMREFMLKQTRDKD 157 Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204 L LF+D++ + T ITK +++ ++IPSF+ISEL+ +F+IGFL+ +PFLIID++VA+ Sbjct: 158 LELFLDISKTDK--TKITK-ENVPMYVVIPSFIISELKTAFKIGFLLFIPFLIIDIVVAS 214 Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++M+MGM MLPP ISLPFK++ FV++DGW LLV++LV + Sbjct: 215 VLMSMGMFMLPPVMISLPFKLLLFVMVDGWYLLVKSLVMGY 255 >gi|85060034|ref|YP_455736.1| flagellar biosynthesis protein FliP [Sodalis glossinidius str. 'morsitans'] gi|84780554|dbj|BAE75331.1| flagellar biosynthesis protein FliP [Sodalis glossinidius str. 'morsitans'] Length = 253 Score = 192 bits (487), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 103/240 (42%), Positives = 153/240 (63%), Gaps = 8/240 (3%) Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRF 65 AL L+ FA+ L +++ P W V+T T L+ P L+M+T F R Sbjct: 18 ALMLLFAPACFAQ--LPSIISQPLPGGSQNWSLPVQTLVFLTSLTFIPAALLMMTSFTRI 75 Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 IIV +LR+ +G S PPN V++ LALF+TF+VMSP LD PL N+I+ TA+ Sbjct: 76 IIVLGLLRSAIGTPSAPPNQVLLGLALFLTFFVMSPVLDSIYTEAYLPLSENKISMQTAL 135 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185 +R ++P FM TRE DL LF +A+ + + + RIL+P+++ SEL+ +F Sbjct: 136 ERGSQPLRAFMLRQTREADLGLFARLANVP----PLEGPEAVPMRILLPAYVTSELKTAF 191 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +IGF + +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 192 QIGFTLFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLSSLAQSF 251 >gi|167717397|ref|ZP_02400633.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei DM98] Length = 244 Score = 192 bits (487), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 93/206 (45%), Positives = 138/206 (66%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T + T+LS P +L+M+T F R IIV S+LR +G S PPN V++ LALF+T +VM Sbjct: 42 VQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQAIGTASTPPNQVLVGLALFLTLFVM 101 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP LDR+ +P + A+QR PF FM TRE DL+LF ++ ++ Sbjct: 102 SPVLDRAYNDAYKPFSEGTLQMDQAVQRGTAPFKAFMLKQTRETDLALFAKISKAAP--- 158 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + +L+P+F+ SEL+ F+IGF I +PFLIIDM+VA+++M+MGMMM+ P ++ Sbjct: 159 -MQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATV 217 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 218 SLPFKLMLFVLVDGWQLLIGSLAQSF 243 >gi|237731996|ref|ZP_04562477.1| flagellar biosynthesis protein FliP [Citrobacter sp. 30_2] gi|226907535|gb|EEH93453.1| flagellar biosynthesis protein FliP [Citrobacter sp. 30_2] Length = 245 Score = 192 bits (487), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 97/229 (42%), Positives = 150/229 (65%), Gaps = 6/229 (2%) Query: 19 AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 A + L +++ P W V+T T L+ P +L+M+T F R IIVF +LR + Sbjct: 19 ALAQLPGLVSQPLPGGGQNWTLPVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNAL 78 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G S PPN V++ LALF+TF++MSP +D+ QP +I+ A+++ A+P FM Sbjct: 79 GTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEAMEKGAQPLREFM 138 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 TRE DL+LF +A+S + + + RIL+P+++ SEL+ +F+IGF I +PFL Sbjct: 139 LRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFL 194 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 195 IIDLVIASVLMALGMMMVPPATIALPFKMMLFVLVDGWQLLVGSLAQSF 243 >gi|37525861|ref|NP_929205.1| flagellar biosynthesis protein FliP [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785290|emb|CAE14231.1| flagellar biosynthetic protein FliP [Photorhabdus luminescens subsp. laumondii TTO1] Length = 244 Score = 192 bits (487), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 98/229 (42%), Positives = 147/229 (64%), Gaps = 6/229 (2%) Query: 19 AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 A + L +++ P +W V+T T L+ P L+M+T F R IIV +LR + Sbjct: 18 AAAQLPGIISQPLANGGQSWSLPVQTLVFITALTFIPAALLMMTSFTRIIIVLGLLRNAL 77 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G S PPN V++ LALFMTF++MSP D+ + P ++I+ TA++ A+P FM Sbjct: 78 GTPSAPPNQVLLGLALFMTFFIMSPVFDKVYQDAYLPFSEDKISLETALENGAKPLRQFM 137 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 TRE DL+LF +A T D + R+L+P+F+ SEL+ +F+IGF + +PFL Sbjct: 138 LRQTRENDLALFARLADQPPFET----ADSVPMRVLMPAFITSELKTAFQIGFTLFIPFL 193 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 194 IIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 242 >gi|187778762|ref|ZP_02995235.1| hypothetical protein CLOSPO_02357 [Clostridium sporogenes ATCC 15579] gi|187772387|gb|EDU36189.1| hypothetical protein CLOSPO_02357 [Clostridium sporogenes ATCC 15579] Length = 258 Score = 192 bits (487), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 94/199 (47%), Positives = 137/199 (68%), Gaps = 4/199 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T+L++ P ++M+T F R I+VF LR MG PPN V+I LALF+T ++M P Sbjct: 63 TVLTLLPSFIVMMTSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMRPVYTEI 122 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 IQP M N+IT+ A++ A+P FM TR+KDL LF+D+ + + T D+ Sbjct: 123 NTKAIQPYMKNKITQEQAVEIGAKPLRQFMLKQTRQKDLKLFVDLGKPNFKVTK----DN 178 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 I++P+F+ISEL+ +F+IGFL+ +PFLIID++VA+++M+MGM MLPP ISLPFK++ Sbjct: 179 APLDIVVPAFIISELKTAFQIGFLLFIPFLIIDLVVASVLMSMGMFMLPPVMISLPFKLL 238 Query: 227 FFVLIDGWSLLVENLVKSF 245 FV++DGW LLV++LV SF Sbjct: 239 LFVMVDGWYLLVKSLVMSF 257 >gi|254258156|ref|ZP_04949210.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 1710a] gi|254298637|ref|ZP_04966088.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 406e] gi|76580117|gb|ABA49592.1| flagellar biosynthetic protein [Burkholderia pseudomallei 1710b] gi|157808588|gb|EDO85758.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 406e] gi|254216845|gb|EET06229.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 1710a] Length = 276 Score = 192 bits (487), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 93/206 (45%), Positives = 138/206 (66%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T + T+LS P +L+M+T F R IIV S+LR +G S PPN V++ LALF+T +VM Sbjct: 74 VQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQAIGTASTPPNQVLVGLALFLTLFVM 133 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP LDR+ +P + A+QR PF FM TRE DL+LF ++ ++ Sbjct: 134 SPVLDRAYNDAYKPFSEGTLQMDQAVQRGTAPFKAFMLKQTRETDLALFAKISKAAP--- 190 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + +L+P+F+ SEL+ F+IGF I +PFLIIDM+VA+++M+MGMMM+ P ++ Sbjct: 191 -MQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATV 249 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 250 SLPFKLMLFVLVDGWQLLIGSLAQSF 275 >gi|332524236|ref|ZP_08400462.1| flagellar biosynthesis protein FliP [Rubrivivax benzoatilyticus JA2] gi|332107571|gb|EGJ08795.1| flagellar biosynthesis protein FliP [Rubrivivax benzoatilyticus JA2] Length = 252 Score = 192 bits (487), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 94/207 (45%), Positives = 139/207 (67%), Gaps = 4/207 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++T FT LS P LL+++T F R +IV S+LR +G + PPN VII ++LF+TF+VM Sbjct: 49 IQTLLFFTALSFIPALLLLMTGFTRIVIVLSLLRQALGTQAAPPNQVIIGMSLFLTFFVM 108 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SPT DR + +P NQI A++R P FM TR+ D+ LF +A Sbjct: 109 SPTFDRVYDQAYKPFAENQIAFDEALKRGEVPMREFMLKQTRQSDVQLFAKLAKLPAE-- 166 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 K++ + R+L+P+F+ SEL+ +F+IGF+I +PFLIIDMIVA+++M++GMMML P + Sbjct: 167 --VKSEDVPLRVLVPAFVTSELKSAFQIGFMIFIPFLIIDMIVASVLMSLGMMMLSPVLV 224 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246 +LPFK++ FVL DGW+LL+ +L SF+ Sbjct: 225 ALPFKLMLFVLADGWNLLLGSLAASFV 251 >gi|157164339|ref|YP_001466589.1| flagellar biosynthesis protein FliP [Campylobacter concisus 13826] gi|112800704|gb|EAT98048.1| flagellar biosynthetic protein FliP [Campylobacter concisus 13826] Length = 243 Score = 192 bits (487), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 101/194 (52%), Positives = 134/194 (69%), Gaps = 6/194 (3%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P L+ M+T F R +IVFS LR MG VPP+ V+ISLA+ +TF++M P RS + GI+ Sbjct: 54 PSLIFMMTSFLRLVIVFSFLRQAMGTQQVPPSTVLISLAMVLTFFIMEPVGQRSYDEGIK 113 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYRI 171 P + QI + + +PF FM NTREKDL+LF + RN N + I I Sbjct: 114 PYIAEQIGYEEMLDKSLKPFKEFMVKNTREKDLALFFRI-----RNLQNPANIEDIPLSI 168 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 + +FMISEL+ SFEI FL+ LPFL+IDM+V++++MAMGMMMLPP ISLPFK++ FVL+ Sbjct: 169 AMSAFMISELKTSFEIAFLLYLPFLVIDMVVSSVLMAMGMMMLPPVMISLPFKLLIFVLV 228 Query: 232 DGWSLLVENLVKSF 245 DGW+LL+ NLVKSF Sbjct: 229 DGWNLLIGNLVKSF 242 >gi|305674368|ref|YP_003866040.1| flagellar export machinery protein [Bacillus subtilis subsp. spizizenii str. W23] gi|305412612|gb|ADM37731.1| component of the flagellar export machinery [Bacillus subtilis subsp. spizizenii str. W23] Length = 221 Score = 192 bits (487), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 94/206 (45%), Positives = 142/206 (68%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+ + T+ S+AP +LI++TCF R +IV S +RT + S+PPN V+I LALF+TF++M Sbjct: 20 VKLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATQSMPPNQVLIGLALFLTFFIM 79 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +PT + + PLM+N+I+ A + EP FM +TR+KDL+LFM+ A + Sbjct: 80 APTFSEINKEALTPLMDNKISLDEAYSKAEEPIKEFMSKHTRQKDLALFMNYAKMDKPES 139 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 I ++P+F L+ +F+IGF+I +PFLIIDM+VA+++M+MGMMMLPP I Sbjct: 140 ----LKDIPLTTMVPAFATPILKTAFQIGFMIFIPFLIIDMVVASVLMSMGMMMLPPVMI 195 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW L+V++L++SF Sbjct: 196 SLPFKILLFVLVDGWYLIVKSLLQSF 221 >gi|300717241|ref|YP_003742044.1| flagellar biosynthesis protein [Erwinia billingiae Eb661] gi|299063077|emb|CAX60197.1| Flagellar biosynthesis protein [Erwinia billingiae Eb661] Length = 244 Score = 191 bits (486), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 97/227 (42%), Positives = 149/227 (65%), Gaps = 6/227 (2%) Query: 21 SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 + L +M+ P +W V+T T L+ P +L+M+T F R IIVF +LR +G Sbjct: 20 AQLPGLMSHPTANGGQSWSLPVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGT 79 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 S PPN V++ LALF+TF++M P D+ + P ++I+ AI + A+P FM Sbjct: 80 PSAPPNQVLLGLALFLTFFIMGPVFDKIYQDAYLPFSQDKISMQDAIDKGAQPLREFMLR 139 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 TRE DL+LF +++S + + + RIL+P+++ SEL+ +F+IGF + +PFLII Sbjct: 140 QTREADLALFARLSNSP----PLQGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLII 195 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 D++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGWSLLV +L +SF Sbjct: 196 DLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWSLLVSSLAQSF 242 >gi|310764878|gb|ADP09828.1| Flagellar biosynthetic protein FliP [Erwinia sp. Ejp617] Length = 247 Score = 191 bits (486), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 91/206 (44%), Positives = 142/206 (68%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T + + L+ P +L+M+T F R IIV ++R +G + PPN V++ LALF+TFYVM Sbjct: 44 VQTLVLLSSLTFLPAVLLMMTGFTRIIIVLGLMRNALGTPTAPPNQVLVGLALFLTFYVM 103 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP ++ E QPL ++IT A+++ +P FM + TRE DL++F +A + Sbjct: 104 SPVFNQIYEQAWQPLQEDKITMEVALEQGVKPLRAFMLDQTRENDLAMFAQIAKAG---- 159 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + IL+P+F+ SEL+ +F+IGF I +PFLIID++VA+I+MA+GMMM+PP +I Sbjct: 160 EFKGPEEVPLGILVPAFVTSELKTAFQIGFTIFIPFLIIDLVVASILMALGMMMVPPATI 219 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 +LPFK++ FVL+DGW LL+ +L +SF Sbjct: 220 ALPFKLMLFVLVDGWQLLMGSLAQSF 245 >gi|253996309|ref|YP_003048373.1| flagellar biosynthetic protein FliP [Methylotenera mobilis JLW8] gi|253982988|gb|ACT47846.1| flagellar biosynthetic protein FliP [Methylotenera mobilis JLW8] Length = 251 Score = 191 bits (486), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 96/209 (45%), Positives = 142/209 (67%), Gaps = 4/209 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 T ++T + T L+ P +++M+T F R IIV S+LR +G SVPPN V+I LALF+TF Sbjct: 46 TLSLQTLILLTSLTFLPAIVLMMTGFTRIIIVLSLLRQALGTQSVPPNQVMIGLALFLTF 105 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 +VMSP +D+ +PL NQI+ A+ + P FM TRE DL+LF+ MA Sbjct: 106 FVMSPVIDKIYVDAYKPLSENQISMQEAMDKGVAPLKEFMLKQTREGDLALFVKMAEVEK 165 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 I D + ++L+P+F+ SEL+ +F+IGF I +PFLIIDM+VA+++M+MGMMM+ P Sbjct: 166 ----IESPDQVPLKVLVPAFVTSELKTAFQIGFAIFIPFLIIDMVVASVLMSMGMMMVSP 221 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++LPFK++ FVL+DGW L++ +LV+SF Sbjct: 222 AIVALPFKLMLFVLVDGWQLILGSLVESF 250 >gi|167034912|ref|YP_001670143.1| flagellar biosynthesis protein FliP [Pseudomonas putida GB-1] gi|166861400|gb|ABY99807.1| flagellar biosynthetic protein FliP [Pseudomonas putida GB-1] Length = 251 Score = 191 bits (486), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 94/201 (46%), Positives = 134/201 (66%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 I T LS P +I++T F R IIVFSILR +G+ P N ++ +ALF+T ++M+P D Sbjct: 52 IMTALSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQLLTGMALFLTMFIMAPVFD 111 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 R + +QP + Q+T AI + P FM TR+ DL LFM ++ + TDI Sbjct: 112 RVNQDALQPYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDLDLFMRLS----KRTDIAGP 167 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D + IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA+++MAMGMMML P ISLPFK Sbjct: 168 DQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFK 227 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW+L++ L SF Sbjct: 228 IMLFVLVDGWALIMGTLASSF 248 >gi|33592492|ref|NP_880136.1| flagellar biosynthesis protein FliP [Bordetella pertussis Tohama I] gi|33572138|emb|CAE41681.1| flagellar biosynthetic protein FliP [Bordetella pertussis Tohama I] gi|332381910|gb|AEE66757.1| flagellar biosynthesis protein FliP [Bordetella pertussis CS] Length = 244 Score = 191 bits (486), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 101/234 (43%), Positives = 146/234 (62%), Gaps = 6/234 (2%) Query: 14 PELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71 P A+++L + P T+ + +T + T LS P L+M+T F R IIV + Sbjct: 13 PSGALAQATLPALTATPGPNGSETYSLSMQTLLLMTSLSFLPAALLMMTGFTRIIIVLGL 72 Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131 LR+ MG PPN V+I LALF+TFY MSP D+ QPL I TA++R P Sbjct: 73 LRSAMGTAMSPPNHVLIGLALFLTFYTMSPVFDKIYTDAYQPLAAGSIPFETAVERAGAP 132 Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191 FM + TRE DL+LF ++A+ + + RILIP+F+ SEL+ +F+IGF I Sbjct: 133 LHNFMLHQTRENDLTLFANLANLP----AMEDPSQVPMRILIPAFITSELKTAFQIGFTI 188 Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PFLIID++VA+++MA+GMMM+PP +++LPFK++ FVL DGW LL+ +L +SF Sbjct: 189 FIPFLIIDLVVASVLMALGMMMVPPVTVALPFKLMLFVLADGWHLLLGSLAQSF 242 >gi|332343674|gb|AEE57008.1| flagellar biosynthetic protein FliP [Escherichia coli UMNK88] Length = 245 Score = 191 bits (486), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 101/239 (42%), Positives = 156/239 (65%), Gaps = 9/239 (3%) Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66 L+L+TP L FA+ L + + P +W V+T T L+ P +L+M+T F R I Sbjct: 12 LWLITP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A++ Sbjct: 69 IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 + A+P FM RE DL LF +A++ + + + RIL+P+++ SEL+ +F+ Sbjct: 129 KGAQPLREFMLRQIREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQ 184 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243 >gi|126442020|ref|YP_001057087.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei 668] gi|126453057|ref|YP_001064317.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei 1106a] gi|134281410|ref|ZP_01768118.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 305] gi|217423958|ref|ZP_03455458.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 576] gi|226193182|ref|ZP_03788792.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei Pakistan 9] gi|237814425|ref|YP_002898876.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei MSHR346] gi|242316101|ref|ZP_04815117.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 1106b] gi|254184095|ref|ZP_04890686.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 1655] gi|254186561|ref|ZP_04893078.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei Pasteur 52237] gi|254194632|ref|ZP_04901063.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei S13] gi|42766712|gb|AAS45439.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei] gi|126221513|gb|ABN85019.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 668] gi|126226699|gb|ABN90239.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 1106a] gi|134247077|gb|EBA47163.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 305] gi|157934246|gb|EDO89916.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei Pasteur 52237] gi|169651382|gb|EDS84075.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei S13] gi|184214627|gb|EDU11670.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 1655] gi|217393021|gb|EEC33043.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 576] gi|225934782|gb|EEH30759.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei Pakistan 9] gi|237505052|gb|ACQ97370.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei MSHR346] gi|242139340|gb|EES25742.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 1106b] Length = 276 Score = 191 bits (486), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 93/206 (45%), Positives = 138/206 (66%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T + T+LS P +L+M+T F R IIV S+LR +G S PPN V++ LALF+T +VM Sbjct: 74 VQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQAIGTASTPPNQVLVGLALFLTLFVM 133 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP LDR+ +P + A+QR PF FM TRE DL+LF ++ ++ Sbjct: 134 SPVLDRAYNDAYKPFSEGTLQMDQAVQRGTAPFKAFMLKQTRETDLALFAKISKAAP--- 190 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + +L+P+F+ SEL+ F+IGF I +PFLIIDM+VA+++M+MGMMM+ P ++ Sbjct: 191 -MQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATV 249 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 250 SLPFKLMLFVLVDGWQLLIGSLAQSF 275 >gi|253990104|ref|YP_003041460.1| flagellar biosynthesis protein FliP [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781554|emb|CAQ84717.1| flagellar biosynthetic protein flip precursor [Photorhabdus asymbiotica] Length = 251 Score = 191 bits (486), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 98/229 (42%), Positives = 146/229 (63%), Gaps = 6/229 (2%) Query: 19 AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 A + L +++ P +W V+T T L P L+M+T F R IIV +LR + Sbjct: 25 AAAQLPGIISQPLANGGQSWSLPVQTLVFITALGFIPAALLMMTSFTRIIIVLGLLRNAL 84 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G S PPN V++ LALFMTF++MSP D+ + P ++I+ TA++ A+P FM Sbjct: 85 GTPSAPPNQVLLGLALFMTFFIMSPVFDKVYQDAYLPFSEDKISLETALENGAKPLRQFM 144 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 TRE DL+LF +A T D + R+L+P+F+ SEL+ +F+IGF + +PFL Sbjct: 145 LRQTRENDLALFARLADQPPFET----ADSVPMRVLMPAFITSELKTAFQIGFTLFIPFL 200 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 201 IIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 249 >gi|333003044|gb|EGK22598.1| flagellar biosynthetic protein FliP [Shigella flexneri VA-6] Length = 245 Score = 191 bits (486), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 101/239 (42%), Positives = 156/239 (65%), Gaps = 9/239 (3%) Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66 L+L+ P L FA+ L + + P +W V+T T L+ P +L+M+T F R I Sbjct: 12 LWLIMP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A++ Sbjct: 69 IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 + A+P FM TRE DL LF +A++ + + + RIL+P+++ SEL+ +F+ Sbjct: 129 KGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQ 184 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243 >gi|313682238|ref|YP_004059976.1| flagellar biosynthetic protein flip [Sulfuricurvum kujiense DSM 16994] gi|313155098|gb|ADR33776.1| flagellar biosynthetic protein FliP [Sulfuricurvum kujiense DSM 16994] Length = 244 Score = 191 bits (486), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 93/193 (48%), Positives = 135/193 (69%), Gaps = 4/193 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP L++++T F RF+IVF LR +G VPP +++ LAL +T +VM P ++ + GI Sbjct: 54 APSLVLVMTTFTRFVIVFGFLRQALGTQQVPPTQLLVMLALILTVFVMEPVATKAYDEGI 113 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 +P +IT A ++ EPF FM NTREKDL+LF+ + H + + + I Sbjct: 114 KPYSEEKITYDEAFEKTTEPFKNFMVRNTREKDLALFLRIRHMQNPQSI----KEVPLTI 169 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 +IP+FMISEL+ +FEIGFL+ LPFL+IDM+VA+I+M+MGMMMLPP IS+PFK++ FV++ Sbjct: 170 VIPAFMISELKTAFEIGFLLFLPFLVIDMVVASILMSMGMMMLPPVMISMPFKILVFVMV 229 Query: 232 DGWSLLVENLVKS 244 DGW+LL+ NL+ S Sbjct: 230 DGWNLLIGNLIAS 242 >gi|271500076|ref|YP_003333101.1| flagellar biosynthetic protein FliP [Dickeya dadantii Ech586] gi|270343631|gb|ACZ76396.1| flagellar biosynthetic protein FliP [Dickeya dadantii Ech586] Length = 258 Score = 191 bits (486), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 101/248 (40%), Positives = 160/248 (64%), Gaps = 10/248 (4%) Query: 1 MIRYCFFA-LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLI 57 ++RY + L L+ P A + L +++ P +W V+T T LS P +L+ Sbjct: 16 LLRYPAASMLLLIAPH---ALAQLPSIISHPLPNGGQSWSLPVQTLIFITALSFIPAVLL 72 Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 M+TCF R IIV S+LR +G + PPN V++ L+LF+TF+VMSP L+R + +P + Sbjct: 73 MMTCFTRIIIVLSLLRNALGTPTAPPNQVLLGLSLFLTFFVMSPVLNRIYDEAYRPFSED 132 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177 +I+ AI + ++P FM TRE DL+LF +A + + + R+L+P+++ Sbjct: 133 KISMEVAIDKGSKPLREFMLRQTREADLALFTRLAQIP----SLQGPEAVPMRVLVPAYV 188 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 SEL+ +F+IGF I +PFL+ID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL Sbjct: 189 TSELKTAFQIGFTIFIPFLLIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLL 248 Query: 238 VENLVKSF 245 + +L +SF Sbjct: 249 LGSLAQSF 256 >gi|147678411|ref|YP_001212626.1| flagellar biosynthesis protein FliP [Pelotomaculum thermopropionicum SI] gi|146274508|dbj|BAF60257.1| flagellar biosynthesis pathway, component FliP [Pelotomaculum thermopropionicum SI] Length = 257 Score = 191 bits (486), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 94/194 (48%), Positives = 135/194 (69%), Gaps = 4/194 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP L+M+T F R IIV S+LRT +G+ P N ++I LALF+T ++M+P + I Sbjct: 67 APAFLVMMTSFTRIIIVLSLLRTALGVHQAPANQIVIGLALFLTVFIMAPVYREINDNSI 126 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 QP + NQI++ A +R +P FM TREKDL LF+ +A K + + + Sbjct: 127 QPYLQNQISQEEAQERGVKPLRDFMLRQTREKDLGLFISLAKMEKPE----KPEDVPLHV 182 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 +IPSF+ISEL+ +FEIGFL+ +PFL+IDM+VA+I+M+MGM MLPP ISLPFK++ FV++ Sbjct: 183 VIPSFIISELKTAFEIGFLLFVPFLVIDMVVASILMSMGMFMLPPVMISLPFKILLFVMV 242 Query: 232 DGWSLLVENLVKSF 245 DGW L+V++LV+SF Sbjct: 243 DGWYLVVKSLVESF 256 >gi|317048609|ref|YP_004116257.1| flagellar biosynthetic protein FliP [Pantoea sp. At-9b] gi|316950226|gb|ADU69701.1| flagellar biosynthetic protein FliP [Pantoea sp. At-9b] Length = 244 Score = 191 bits (486), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 98/229 (42%), Positives = 150/229 (65%), Gaps = 6/229 (2%) Query: 19 AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 A + L +++ P +W V+T T L+ P +L+M+T F R IIVF +LR + Sbjct: 18 AHAQLPGLVSHPLANGGQSWSLPVQTLVFITSLTFIPAVLLMMTSFTRIIIVFGLLRNAL 77 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G S PPN V++ LALF+TF++M+PT D+ P ++I+ AI + A+P FM Sbjct: 78 GTPSAPPNQVLVGLALFLTFFIMAPTFDKIYSDAYLPFSQDKISMDVAIDKGAQPLREFM 137 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 TRE DL+LF +A++ I + + RIL+P+++ SEL+ +F+IGF + +PFL Sbjct: 138 LRQTREADLALFARLANTP----PIEGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFL 193 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LLV +L +SF Sbjct: 194 IIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLVGSLAQSF 242 >gi|74312488|ref|YP_310907.1| flagellar biosynthesis protein FliP [Shigella sonnei Ss046] gi|73855965|gb|AAZ88672.1| flagellar biosynthesis [Shigella sonnei Ss046] gi|323168931|gb|EFZ54611.1| flagellar biosynthetic protein FliP [Shigella sonnei 53G] Length = 245 Score = 191 bits (486), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 102/239 (42%), Positives = 156/239 (65%), Gaps = 9/239 (3%) Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66 L+LVTP L FA+ L + + P +W V+T T L+ P +L+M+T F R I Sbjct: 12 LWLVTP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IVF +LR +G S PPN V++ LALF+TF++MS +D+ QP +I+ A++ Sbjct: 69 IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSSVIDKIYVDAYQPFSEEKISMQEALE 128 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 + A+P FM TRE DL LF +A++ + + + RIL+P+++ SEL+ +F+ Sbjct: 129 KGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQ 184 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243 >gi|325273552|ref|ZP_08139782.1| flagellar biosynthesis protein FliP [Pseudomonas sp. TJI-51] gi|324101312|gb|EGB98928.1| flagellar biosynthesis protein FliP [Pseudomonas sp. TJI-51] Length = 255 Score = 191 bits (486), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 94/201 (46%), Positives = 134/201 (66%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 I T LS P +I++T F R IIVFSILR +G+ P N ++ +ALF+T ++M+P D Sbjct: 56 IMTALSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQLLTGMALFLTMFIMAPVFD 115 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 R + +QP + Q+T AI + P FM TR+ DL LFM ++ + TDI Sbjct: 116 RVNQDALQPYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDLDLFMRLS----KRTDIAGP 171 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D + IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA+++MAMGMMML P ISLPFK Sbjct: 172 DQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFK 231 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW+L++ L SF Sbjct: 232 IMLFVLVDGWALIMGTLASSF 252 >gi|124516299|gb|EAY57807.1| Flagellar biosynthesis protein FliP [Leptospirillum rubarum] Length = 265 Score = 191 bits (486), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 92/193 (47%), Positives = 134/193 (69%), Gaps = 3/193 (1%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +L+M+T F R ++V S LR MG VPPN V++ L+LF+TF+VM+P E I Sbjct: 75 PAILVMMTSFTRIVVVLSFLRQAMGTAQVPPNQVLVGLSLFLTFFVMAPVWKTMDETAIT 134 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P ++ +I A+ R +P FM R+KD++LF+ +AH + D I +L Sbjct: 135 PYLDKKIAPDVAVDRAMKPVRAFMFRQVRQKDIALFVRIAHLPRTPS---SPDDIPTYVL 191 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 IP+F++SEL +FE+GFLI LPFLI+DM+V++++M+MGMMMLPPT +SLPFK++ FVL+D Sbjct: 192 IPAFVVSELSTAFEMGFLIYLPFLILDMVVSSVLMSMGMMMLPPTVVSLPFKILLFVLVD 251 Query: 233 GWSLLVENLVKSF 245 GWSL+V +LV+SF Sbjct: 252 GWSLVVGSLVRSF 264 >gi|26991044|ref|NP_746469.1| flagellar biosynthesis protein FliP [Pseudomonas putida KT2440] gi|24986076|gb|AAN69933.1|AE016632_4 flagellar biosynthetic protein FliP [Pseudomonas putida KT2440] gi|5921665|gb|AAD01927.2| FliP [Pseudomonas putida] gi|313497809|gb|ADR59175.1| FliP [Pseudomonas putida BIRD-1] Length = 251 Score = 191 bits (486), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 94/201 (46%), Positives = 134/201 (66%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 I T LS P +I++T F R IIVFSILR +G+ P N ++ +ALF+T ++M+P D Sbjct: 52 IMTALSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQLLTGMALFLTMFIMAPVFD 111 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 R + +QP + Q+T AI + P FM TR+ DL LFM ++ + TDI Sbjct: 112 RVNQDALQPYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDLDLFMRLS----KRTDIAGP 167 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D + IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA+++MAMGMMML P ISLPFK Sbjct: 168 DQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFK 227 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW+L++ L SF Sbjct: 228 IMLFVLVDGWALIMGTLASSF 248 >gi|283785718|ref|YP_003365583.1| flagellar biosynthetic protein FliP [Citrobacter rodentium ICC168] gi|282949172|emb|CBG88780.1| flagellar biosynthetic protein FliP [Citrobacter rodentium ICC168] Length = 245 Score = 191 bits (486), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 97/229 (42%), Positives = 149/229 (65%), Gaps = 6/229 (2%) Query: 19 AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 A + L ++ P +W V+T T L+ P +L+M+T F R IIVF +LR + Sbjct: 19 ALAQLPGLVAQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIIIVFGLLRNAL 78 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G S PPN V++ LALF+TF++MSP +D+ QP +I+ A+ + A+P FM Sbjct: 79 GTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVEAYQPFSEEKISMQEALDKGAQPLREFM 138 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 TRE DL+LF +A+S + + + RIL+P+++ SEL+ +F+IGF I +PFL Sbjct: 139 LRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFL 194 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 195 IIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243 >gi|149377875|ref|ZP_01895604.1| flagellar biosynthesis protein P [Marinobacter algicola DG893] gi|149357817|gb|EDM46310.1| flagellar biosynthesis protein P [Marinobacter algicola DG893] Length = 254 Score = 191 bits (485), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 94/240 (39%), Positives = 154/240 (64%), Gaps = 20/240 (8%) Query: 18 FAKSSLHDVMNIPA------------DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65 +A ++L D+ IPA + S+S ++ + T L+ P +L+M+T F R Sbjct: 21 WAPAALADIPGIPAFTVTPGEEEGVQEYSVS---LQILALMTALTFLPAMLMMMTSFTRI 77 Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 I+VF+ILR +G+ S P N +++ L LF+T ++M P L+ E+ +QP M +++ A+ Sbjct: 78 IVVFAILRQALGLQSTPSNQILLGLTLFLTIFIMKPVLEEVNEVALQPYMQEELSSLEAV 137 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185 ++ ++PF FM TRE DL LFM +A + + + + +L+P+F+ SEL+ +F Sbjct: 138 EQASQPFRKFMLAQTRESDLGLFMRIADEQYDTAE-----DVSFWVLLPAFVTSELKTAF 192 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +IGF++ +PFLIIDM+VA+++MAMGMMML P ISLPFK++ FVL+DGW+L++ L S+ Sbjct: 193 QIGFILFIPFLIIDMVVASVLMAMGMMMLSPIIISLPFKIMLFVLVDGWALIMGTLAASY 252 >gi|251789178|ref|YP_003003899.1| flagellar biosynthetic protein FliP [Dickeya zeae Ech1591] gi|247537799|gb|ACT06420.1| flagellar biosynthetic protein FliP [Dickeya zeae Ech1591] Length = 258 Score = 191 bits (485), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 97/239 (40%), Positives = 155/239 (64%), Gaps = 9/239 (3%) Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66 L L+ P A + L +++ P +W ++T T LS P +L+M+TCF R I Sbjct: 25 LLLIAPH---ALAQLPGIISQPLANGGQSWSLPIQTLVFITALSFIPAVLLMMTCFTRII 81 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IV S+LR +G + PPN V++ L+LF+TF+VMSP L+R + +P ++I+ AI Sbjct: 82 IVLSLLRNALGTPTAPPNQVLLGLSLFLTFFVMSPVLNRIYDEAYRPFSEDKISMEVAID 141 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 + ++P FM TRE DL+LF +A + + + R+L+P+++ SEL+ +F+ Sbjct: 142 KGSQPLREFMLRQTREADLALFTRLAQIP----SLQGPEAVPMRVLVPAYVTSELKTAFQ 197 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGF I +PFL+ID++VA+++MA+GMMM+PP +I+LPFK++ FVL+DGW LL+ +L +SF Sbjct: 198 IGFTIFIPFLLIDLVVASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLLGSLAQSF 256 >gi|291519582|emb|CBK74803.1| flagellar biosynthetic protein FliP [Butyrivibrio fibrisolvens 16/4] Length = 284 Score = 191 bits (485), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 92/201 (45%), Positives = 138/201 (68%), Gaps = 5/201 (2%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + TIL+++P +LIM+T F R +IV +R +G + PPN V+I LALF+T ++MSP L Sbjct: 88 VLTILTLSPSILIMLTSFTRCVIVLHFVRAAIGTNTAPPNQVLIGLALFLTLFIMSPVLT 147 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 I P +IT+ AI P FM T+ KDL+LF D+A ++ + Sbjct: 148 TIKTEAIDPFDAGEITQQEAIDAAIAPVREFMYGQTQTKDLNLFCDIAGITYE-----EY 202 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D + + +++P+F++SELR +F IGFLI +PF++IDM+VA+++M+MGMMMLPPT+ISLPFK Sbjct: 203 DEVPFTVVVPAFILSELRTAFIIGFLIYVPFIVIDMVVASVLMSMGMMMLPPTTISLPFK 262 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW L++ LVK+F Sbjct: 263 ILLFVLVDGWDLVIGGLVKTF 283 >gi|329298603|ref|ZP_08255939.1| flagellar biosynthesis protein FliP [Plautia stali symbiont] Length = 341 Score = 191 bits (485), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 94/206 (45%), Positives = 141/206 (68%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T T L+ P +L+M+T F R IIVF +LR +G S PPN V++ LALF+ F++M Sbjct: 138 VQTLVFITSLTFIPAVLLMITSFTRIIIVFGLLRNALGTPSAPPNQVMLGLALFLNFFIM 197 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +PT D+ P ++I+ AI + A+P FM TRE DL+LF +A+S+ Sbjct: 198 APTFDKIYTDAYLPFSQDKISMDVAIDKGAQPLREFMLRQTRETDLALFARLANSA---- 253 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 I + + RIL+P+++ SEL+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP +I Sbjct: 254 PIQGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATI 313 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW LLV +L +SF Sbjct: 314 SLPFKLMLFVLVDGWQLLVGSLAQSF 339 >gi|312879603|ref|ZP_07739403.1| flagellar biosynthetic protein FliP [Aminomonas paucivorans DSM 12260] gi|310782894|gb|EFQ23292.1| flagellar biosynthetic protein FliP [Aminomonas paucivorans DSM 12260] Length = 258 Score = 191 bits (485), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 93/216 (43%), Positives = 146/216 (67%), Gaps = 7/216 (3%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P D++++ IV + T+LS+AP +++M+T F R ++V +R MG+ +PPN V+++ Sbjct: 49 PQDVALTLQIV---ALMTVLSMAPAIILMLTSFTRILVVLGFIRNAMGLQQMPPNQVLVT 105 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 LALF+TF+ M+P D+ G+ P MN QI A R +P FM TREK+LSL + Sbjct: 106 LALFLTFFTMTPVWDQIYGKGLVPYMNGQIPAAQAWDRSIKPLRAFMFRQTREKELSLMV 165 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 +A D I R+L+P+FM+SEL+ +F++G ++ +PF++IDMIV++++M+M Sbjct: 166 RLAKMPQPKN----QDGIPTRVLMPAFMLSELKTAFQMGVVLFIPFIVIDMIVSSVLMSM 221 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GM+MLPP ISLPFKV+ FV+ DGW+L++ +LV SF Sbjct: 222 GMIMLPPMMISLPFKVLLFVMADGWNLVIASLVTSF 257 >gi|218133679|ref|ZP_03462483.1| hypothetical protein BACPEC_01548 [Bacteroides pectinophilus ATCC 43243] gi|217991054|gb|EEC57060.1| hypothetical protein BACPEC_01548 [Bacteroides pectinophilus ATCC 43243] Length = 278 Score = 191 bits (485), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 93/215 (43%), Positives = 147/215 (68%), Gaps = 2/215 (0%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 D S +++ + TI+S+AP +L+++T F R +IV R +G+ ++PPN V+I L Sbjct: 65 GDGSDMASVLQMLLVLTIISLAPSILMLLTSFTRIVIVLHFTRAALGVQTIPPNQVLIGL 124 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 ++F+TF+VMSPT + + I+PL NN+IT A +P FM KDL F++ Sbjct: 125 SIFLTFFVMSPTFTQVYDSAIKPLSNNEITTEQAFDAGIKPMRAFMLKQVSTKDLDTFLN 184 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 +A + + I D I +LIP+F+ISELR +F IGFLI +PF++IDM+V++++M+MG Sbjct: 185 IAGTEAGS--IENEDDIPLNVLIPAFIISELRIAFIIGFLIYIPFIVIDMVVSSVLMSMG 242 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMMLPPT+IS+PFK++ FV+ DGW+L++ NL+++F Sbjct: 243 MMMLPPTTISMPFKILLFVMADGWNLVIGNLMQTF 277 >gi|260438790|ref|ZP_05792606.1| flagellar biosynthetic protein FliP [Butyrivibrio crossotus DSM 2876] gi|292808779|gb|EFF67984.1| flagellar biosynthetic protein FliP [Butyrivibrio crossotus DSM 2876] Length = 272 Score = 191 bits (485), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 93/201 (46%), Positives = 140/201 (69%), Gaps = 2/201 (0%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T++++AP +LIM+T F R IIV R+ +G + PPN V++ LALF+TF++M+PT Sbjct: 73 VLTVIALAPSILIMLTSFTRIIIVLHFTRSAIGTQTAPPNQVLVGLALFLTFFIMAPTFK 132 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + I+PL N+IT A +P FM T KD+ +F+D+A + + Sbjct: 133 TVYDDAIKPLSKNEITSEEAYDVGIKPIRQFMLEQTNTKDIRMFIDIAKVD--TSTLKDY 190 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D I ++LIPSF++SELR +F IGFLI +PF+IIDM+V++ +M+MGMMMLPPT+ISLPFK Sbjct: 191 DDIPIQVLIPSFIVSELRIAFIIGFLIYIPFIIIDMVVSSALMSMGMMMLPPTTISLPFK 250 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ F++ DGW+L++ NLVK+F Sbjct: 251 ILLFIMADGWNLVIGNLVKTF 271 >gi|206603142|gb|EDZ39622.1| Flagellar biosynthesis protein FliP [Leptospirillum sp. Group II '5-way CG'] Length = 265 Score = 191 bits (485), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 92/193 (47%), Positives = 134/193 (69%), Gaps = 3/193 (1%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +L+M+T F R ++V S LR MG VPPN V++ L+LF+TF+VM+P E I Sbjct: 75 PAILVMMTSFTRIVVVLSFLRQAMGTAQVPPNQVLVGLSLFLTFFVMAPVWKTMDETAIT 134 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P ++ +I A+ R +P FM R+KD++LF+ +AH + D I +L Sbjct: 135 PYLDKKIAPDVAVDRAMKPVRAFMFRQVRQKDIALFVRIAHLPRTPS---SPDDIPTYVL 191 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 IP+F++SEL +FE+GFLI LPFLI+DM+V++++M+MGMMMLPPT +SLPFK++ FVL+D Sbjct: 192 IPAFVVSELSTAFEMGFLIYLPFLILDMVVSSVLMSMGMMMLPPTVVSLPFKILLFVLVD 251 Query: 233 GWSLLVENLVKSF 245 GWSL+V +LV+SF Sbjct: 252 GWSLVVGSLVRSF 264 >gi|56964019|ref|YP_175750.1| flagellar biosynthesis protein FliP [Bacillus clausii KSM-K16] gi|56910262|dbj|BAD64789.1| flagellar biosynthetic protein FliP [Bacillus clausii KSM-K16] Length = 227 Score = 191 bits (484), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 96/201 (47%), Positives = 136/201 (67%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T+L+IAP +LIM+TCF R IIV + +R G+ S PPN V+I LALF+T ++M+P + Sbjct: 30 LLTVLTIAPGILIMMTCFTRIIIVLAFVRQGLATQSTPPNQVLIGLALFITAFIMAPVIQ 89 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 E PL + + + A + P FM +TREKDL+LFM R I Sbjct: 90 EVYETAYVPLADGEYSSEEAFEAAVVPIKEFMSAHTREKDLALFMGYG-GYDRPASI--- 145 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D + L+P+F ISEL+ +F+IGFLI +PFL+IDMIVA+++M+MGMMMLPP I+LPFK Sbjct: 146 DDVPLTALVPAFAISELKTAFQIGFLIFIPFLVIDMIVASVLMSMGMMMLPPVMIALPFK 205 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 V+ FVL+DGW L+V++L+ S+ Sbjct: 206 VLLFVLVDGWYLVVQSLLISY 226 >gi|259908768|ref|YP_002649124.1| flagellar biosynthesis protein FliP [Erwinia pyrifoliae Ep1/96] gi|224964390|emb|CAX55899.1| Flagellar biosynthesis protein [Erwinia pyrifoliae Ep1/96] gi|283478744|emb|CAY74660.1| Flagellar biosynthetic protein FliP precursor [Erwinia pyrifoliae DSM 12163] gi|310767334|gb|ADP12284.1| flagellar biosynthesis protein FliP [Erwinia sp. Ejp617] Length = 245 Score = 191 bits (484), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 95/227 (41%), Positives = 148/227 (65%), Gaps = 6/227 (2%) Query: 21 SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 + L +++ P +W V+T T L+ P +L+M+T F R IIVF +LR +G Sbjct: 21 AQLPGLVSQPTANGGQSWSLPVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGT 80 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 S PPN V++ L+LF+TF++M P D+ QP ++I+ AI + A+P FM Sbjct: 81 PSAPPNQVLLGLSLFLTFFIMGPVFDKMYTDAYQPFSEDKISMQEAIDKGAQPLREFMLR 140 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 TRE DL+LF +A++ I + + RIL+P+++ SEL+ +F+IGF + +PFLII Sbjct: 141 QTREADLALFARLANTPP----IAGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLII 196 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 D++VA+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 197 DLVVASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVSSLAQSF 243 >gi|332981449|ref|YP_004462890.1| flagellar biosynthetic protein FliP [Mahella australiensis 50-1 BON] gi|332699127|gb|AEE96068.1| flagellar biosynthetic protein FliP [Mahella australiensis 50-1 BON] Length = 257 Score = 191 bits (484), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 94/196 (47%), Positives = 139/196 (70%), Gaps = 8/196 (4%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +LIM+T F R I+V S +R+ +G+ +PPN VII LALF+TF+ M+P + + + Sbjct: 67 APAILIMLTSFTRIIVVLSFVRSALGLQQMPPNQVIIGLALFLTFFTMAPVATQINQTAL 126 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA--HSSHRNTDITKNDHIEY 169 QP MN QI + AI P FM TREKDL+LF++++ + +DI+ Sbjct: 127 QPYMNGQIEQQQAIDNAMVPLREFMFKETREKDLNLFVNLSGMDKPEQLSDISST----- 181 Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229 +LIP+F+ISEL+ +F+IGFLI +PF++IDM+VAT +M+MGMMM+PP ISLPFKV+ F+ Sbjct: 182 -VLIPAFIISELKTAFQIGFLIYVPFIVIDMVVATTLMSMGMMMIPPVMISLPFKVLLFI 240 Query: 230 LIDGWSLLVENLVKSF 245 ++DGW+L+V++L+ SF Sbjct: 241 MVDGWNLVVQSLITSF 256 >gi|317492418|ref|ZP_07950847.1| flagellar biosynthetic protein FliP [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919757|gb|EFV41087.1| flagellar biosynthetic protein FliP [Enterobacteriaceae bacterium 9_2_54FAA] Length = 248 Score = 191 bits (484), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 94/206 (45%), Positives = 140/206 (67%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T T L+ P L+M+T F R IIV +LR+ +G S PPN V++ LALF+TF+VM Sbjct: 45 VQTLVFLTSLTFLPAALLMMTSFTRIIIVLGLLRSALGTPSAPPNQVMLGLALFLTFFVM 104 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP D+ + QP ++IT A+ R A+P FM TRE DL+L+ +A+ Sbjct: 105 SPVFDKIYQDAYQPFSQDKITMDVAMDRGAQPLREFMLRQTRETDLALYAKLANLPQ--- 161 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + RIL+P+++ SEL+ +F+IGF I +PFLIID++VA+++MA+GMMM+PP +I Sbjct: 162 -MAGPEDVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATI 220 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 221 SLPFKLMLFVLVDGWQLLLGSLAQSF 246 >gi|152986552|ref|YP_001349235.1| flagellar biosynthesis protein FliP [Pseudomonas aeruginosa PA7] gi|150961710|gb|ABR83735.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa PA7] Length = 255 Score = 191 bits (484), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 95/201 (47%), Positives = 135/201 (67%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 I T LS P ++++T F R IIVFSILR +G+ S P N V++ LALF+T +VM+P D Sbjct: 56 IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFD 115 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 R +QP +N QI A+QR P FM TR DL LF+ ++ + TDI+ Sbjct: 116 RINSQALQPYLNEQIPAQEALQRAEVPLKAFMLAQTRTSDLELFVRLS----KRTDISGP 171 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + IL+P+F+ SEL+ +F+IGF+I +PFLIID++V++++MAMGMMML P ISLPFK Sbjct: 172 EATPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMMMLSPLIISLPFK 231 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW+L++ L SF Sbjct: 232 IMLFVLVDGWALIIGTLAGSF 252 >gi|300994267|ref|ZP_07180819.1| flagellar biosynthetic protein FliP [Escherichia coli MS 200-1] gi|300304932|gb|EFJ59452.1| flagellar biosynthetic protein FliP [Escherichia coli MS 200-1] Length = 245 Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 101/239 (42%), Positives = 156/239 (65%), Gaps = 9/239 (3%) Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66 L+L+TP L FA+ L + + P +W V+T T L+ +L+M+T F R I Sbjct: 12 LWLITP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIQAILLMMTSFTRII 68 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A++ Sbjct: 69 IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 + A+P FM TRE DL LF +A++ + + + RIL+P+++ SEL+ +F+ Sbjct: 129 KGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQ 184 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243 >gi|290475714|ref|YP_003468603.1| flagellar biosynthesis protein [Xenorhabdus bovienii SS-2004] gi|289175036|emb|CBJ81839.1| flagellar biosynthesis [Xenorhabdus bovienii SS-2004] Length = 269 Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 96/229 (41%), Positives = 146/229 (63%), Gaps = 6/229 (2%) Query: 19 AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 A ++L +++ P +W V+T T L P L+M+T F R IIV +LR + Sbjct: 43 AAAALPGIISQPMANGGQSWSLPVQTLVFITALGFIPAALLMMTSFTRIIIVLGLLRNAL 102 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G S PPN ++I LALFMTF++MSP D+ + P ++I+ A+ + A+P FM Sbjct: 103 GTPSAPPNQIMIGLALFMTFFIMSPVFDKVYQDAYLPFSEDKISLEAALDKGAQPLRQFM 162 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 TR+ DL+LF +A T D + R+L+P+F+ SEL+ +F+IGF + +PFL Sbjct: 163 LRQTRQTDLALFARLADQDAFET----ADSVPIRVLVPAFITSELKTAFQIGFTLFIPFL 218 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 219 IIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 267 >gi|296103629|ref|YP_003613775.1| Flagellar biosynthetic protein FliP [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058088|gb|ADF62826.1| Flagellar biosynthetic protein FliP [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 243 Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 93/206 (45%), Positives = 140/206 (67%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T + + + P +L+M+T F R IIV ++R +G + PPN V++ L+LF+TF+VM Sbjct: 40 VQTLLLLSGFTFIPAILLMMTGFTRIIIVLGLMRNALGTPTAPPNQVLVGLSLFLTFFVM 99 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP + E QPL N+IT A+ +P FM + TRE DL++F +A + Sbjct: 100 SPVFSQIYEKAWQPLQENKITMEVALTEGVKPLRAFMLDQTRESDLAMFARIA----KTP 155 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 DI + + IL+P+F+ SEL+ +F+IGF I +PFLIID++VA+I+MA+GMMM+PPT+I Sbjct: 156 DIASPEEVPLSILVPAFITSELKTAFQIGFTIFIPFLIIDLVVASILMALGMMMVPPTTI 215 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 +LPFK++ FVL+DGW LLV +L +SF Sbjct: 216 ALPFKLMLFVLVDGWQLLVGSLAQSF 241 >gi|89098628|ref|ZP_01171510.1| flagellar biosynthesis protein P [Bacillus sp. NRRL B-14911] gi|89086590|gb|EAR65709.1| flagellar biosynthesis protein P [Bacillus sp. NRRL B-14911] Length = 221 Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 91/194 (46%), Positives = 140/194 (72%), Gaps = 4/194 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +LI++TCF R IIV S +RT + +PPN V++ L+LF+TF++M+PT E + Sbjct: 32 APSILILMTCFTRIIIVLSFVRTALATQQMPPNQVLVGLSLFLTFFIMAPTFQEVNEQAL 91 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 PL N++I A ++ + PF FM +TR+KDL+LF++ +S + ++ I Sbjct: 92 TPLFNDEINLEQAYEKASVPFKDFMSAHTRQKDLALFLE--YSGAETPESIQD--IPLTA 147 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 L+P+F ISE++ +F+IGF+I +PFL+IDMIVA+++M+MGMMMLPP ISLPFK++ FVL+ Sbjct: 148 LVPAFAISEIKTAFQIGFMIFIPFLVIDMIVASVLMSMGMMMLPPVMISLPFKILLFVLV 207 Query: 232 DGWSLLVENLVKSF 245 DGW L+V++L++SF Sbjct: 208 DGWYLVVKSLLQSF 221 >gi|167579277|ref|ZP_02372151.1| flagellar biosynthesis protein FliP [Burkholderia thailandensis TXDOH] gi|167617383|ref|ZP_02386014.1| flagellar biosynthesis protein FliP [Burkholderia thailandensis Bt4] Length = 253 Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 92/206 (44%), Positives = 138/206 (66%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T + T+LS P +L+M+T F R IIV S+LR +G S PPN V++ LALF+T +VM Sbjct: 51 VQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQAIGTASTPPNQVLVGLALFLTLFVM 110 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP LD++ +P + A+QR PF FM TRE DL+LF ++ ++ Sbjct: 111 SPVLDKAYTDAYKPFSEGTLQMDQAVQRGTAPFKTFMLKQTRETDLALFAKISKAAP--- 167 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + +L+P+F+ SEL+ F+IGF I +PFLIIDM+VA+++M+MGMMM+ P ++ Sbjct: 168 -MQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATV 226 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 227 SLPFKLMLFVLVDGWQLLIGSLAQSF 252 >gi|259907616|ref|YP_002647972.1| Flagellar biosynthetic protein FliP [Erwinia pyrifoliae Ep1/96] gi|224963238|emb|CAX54722.1| Flagellar biosynthetic protein FliP [Erwinia pyrifoliae Ep1/96] gi|283477458|emb|CAY73374.1| Flagellar biosynthetic protein FliP precursor [Erwinia pyrifoliae DSM 12163] Length = 247 Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 90/206 (43%), Positives = 142/206 (68%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T + + L+ P +L+M+T F R IIV ++R +G + PPN V++ LALF+TFYVM Sbjct: 44 VQTLVLLSSLTFLPAVLLMMTGFTRIIIVLGLMRNALGTPTAPPNQVLVGLALFLTFYVM 103 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP ++ + QPL ++IT A+++ +P FM + TRE DL++F +A + Sbjct: 104 SPVFNQIYQQAWQPLQEDKITMEVALEQGVKPLRAFMLDQTRENDLAMFAQIAKAG---- 159 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + IL+P+F+ SEL+ +F+IGF I +PFLIID++VA+I+MA+GMMM+PP +I Sbjct: 160 EFKGPEEVPLGILVPAFVTSELKTAFQIGFTIFIPFLIIDLVVASILMALGMMMVPPATI 219 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 +LPFK++ FVL+DGW LL+ +L +SF Sbjct: 220 ALPFKLMLFVLVDGWQLLMGSLAQSF 245 >gi|167560941|ref|ZP_02353857.1| flagellar biosynthesis protein FliP [Burkholderia oklahomensis EO147] gi|167568200|ref|ZP_02361074.1| flagellar biosynthesis protein FliP [Burkholderia oklahomensis C6786] Length = 253 Score = 191 bits (484), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 92/206 (44%), Positives = 138/206 (66%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T + T+LS P +L+M+T F R IIV S+LR +G S PPN V++ LALF+T +VM Sbjct: 51 VQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQALGTASTPPNQVLVGLALFLTLFVM 110 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP LD++ +P + A+QR PF FM TRE DL+LF ++ ++ Sbjct: 111 SPVLDKAYADAYKPFSEGTLQMDQAVQRGTAPFKGFMLKQTRETDLALFAKISKAAP--- 167 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + +L+P+F+ SEL+ F+IGF I +PFLIIDM+VA+++M+MGMMM+ P ++ Sbjct: 168 -MQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATV 226 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 227 SLPFKLMLFVLVDGWQLLIGSLAQSF 252 >gi|104782808|ref|YP_609306.1| flagellar biosynthesis protein FliP [Pseudomonas entomophila L48] gi|95111795|emb|CAK16519.1| flagellar biosynthetic protein FliP [Pseudomonas entomophila L48] Length = 251 Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 95/201 (47%), Positives = 134/201 (66%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 I T LS P +I++T F R IIVFSILR +G+ P N V+ +ALF+T ++M+P + Sbjct: 52 IMTALSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQVLTGMALFLTMFIMAPVFE 111 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 R + IQP + Q+T AI + P FM TR+ DL LFM ++ + TDI Sbjct: 112 RVNKDAIQPYLAEQMTAQQAIDKAQGPLKDFMLAQTRQSDLDLFMRLS----KRTDIAGP 167 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D + IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA+++MAMGMMML P ISLPFK Sbjct: 168 DQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFK 227 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW+L++ L SF Sbjct: 228 IMLFVLVDGWALIMGTLAGSF 248 >gi|299066546|emb|CBJ37736.1| Flagellar biosynthetic protein FliP [Ralstonia solanacearum CMR15] Length = 227 Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 93/200 (46%), Positives = 138/200 (69%), Gaps = 4/200 (2%) Query: 46 FTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDR 105 T+L++ P LL+ VT F R IIV S+LR G+GM PPN +I LALF+T + MSPTL++ Sbjct: 31 LTVLAVLPALLVSVTSFLRIIIVLSMLRHGLGMQETPPNTALIGLALFLTLFTMSPTLEQ 90 Query: 106 SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165 QP M I+ A ++ + P FM TRE+DL+L ++++ + + D Sbjct: 91 INRQAFQPFMAGTISMEQAYEKGSAPLRDFMVRQTREQDLALMVELSKAKTPQS----MD 146 Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225 I LIP++M+SELR +F+IGF++ LPFL+ID++V++I+MA+GMMM+PP+++SLP KV Sbjct: 147 DISNVQLIPAYMLSELRTAFQIGFVVFLPFLLIDLVVSSILMALGMMMMPPSTVSLPLKV 206 Query: 226 IFFVLIDGWSLLVENLVKSF 245 + FVL+DGW LL++ LV SF Sbjct: 207 LMFVLMDGWGLLLKALVGSF 226 >gi|83594162|ref|YP_427914.1| flagellar biosynthesis protein FliP [Rhodospirillum rubrum ATCC 11170] gi|83577076|gb|ABC23627.1| Flagellar transport protein FliP [Rhodospirillum rubrum ATCC 11170] Length = 264 Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 107/212 (50%), Positives = 155/212 (73%), Gaps = 5/212 (2%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 S + I++ G+ T+LS+AP LLIMVT F R ++V SILR + S PPN+V++SLALF Sbjct: 55 STTARIIQLVGLLTVLSVAPGLLIMVTSFTRIVVVLSILRQALATQSTPPNMVMVSLALF 114 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 MTF++M+PT ++ + G+ PL+ QI+E A R PF FM + R+KDL LFM Sbjct: 115 MTFFIMAPTFQQAWDQGLSPLIQEQISEEEAFTRTVAPFRTFMLAHVRDKDLELFM---- 170 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 S ++ T +D + + LIP+FMISELRR+FEIGFLI LPF++IDM++A+++M+MGMMM Sbjct: 171 SFNKETAAQPSD-VSTQALIPAFMISELRRAFEIGFLIFLPFVVIDMVIASVLMSMGMMM 229 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LPP +++PFK+IFFVL+DGW L++ +L+ S+ Sbjct: 230 LPPMMLAMPFKLIFFVLVDGWYLVIGSLLSSY 261 >gi|260432140|ref|ZP_05786111.1| flagellar biosynthetic protein FliP [Silicibacter lacuscaerulensis ITI-1157] gi|260415968|gb|EEX09227.1| flagellar biosynthetic protein FliP [Silicibacter lacuscaerulensis ITI-1157] Length = 243 Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 95/212 (44%), Positives = 140/212 (66%), Gaps = 3/212 (1%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 SIS ++ + T+LS+AP L IM+TCFP + V +ILR G+G+ PPN++I+SLALF Sbjct: 34 SISARTIQLILLITVLSLAPGLAIMITCFPFLVTVLAILRQGIGLQQSPPNMLIVSLALF 93 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 +T++VM P ++ E GI+P++ + A++R PF FM D F MA Sbjct: 94 LTYFVMEPVFTQAWETGIRPMVEETMEVEPALERALVPFREFMAARL---DAETFQAMAA 150 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 + + +L+PSFM+SE+ R+F+IGFLI LPFLIID++VA ++M+MGMMM Sbjct: 151 LRPDGEAMELSPQAPLSVLMPSFMLSEIARAFQIGFLIFLPFLIIDLVVAAVLMSMGMMM 210 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PP ++SLPFK+ FFV+ DGWSL+ LV+S+ Sbjct: 211 VPPATVSLPFKLAFFVIADGWSLIAGALVRSY 242 >gi|330814980|ref|YP_004358685.1| Flagellar biosynthetic protein FliP [Burkholderia gladioli BSR3] gi|327367373|gb|AEA58729.1| Flagellar biosynthetic protein FliP [Burkholderia gladioli BSR3] Length = 279 Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 94/206 (45%), Positives = 139/206 (67%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T + T+LS P +++M+T F R IIV S+LR +G + PPN V++ LALF+T +VM Sbjct: 77 VQTMLLLTMLSFLPAIVLMMTSFTRIIIVLSLLRQALGTTTTPPNQVLVGLALFLTLFVM 136 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP LDR+ G QP + A+QR PF FM TRE DL+LF ++ + Sbjct: 137 SPVLDRAYTDGYQPFSAGTLPMDQAVQRGLAPFKTFMLKQTRESDLALFARISKAP---- 192 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + +L+P+F+ SEL+ F+IGF I +PFLIID++VA+++M+MGMMM+ PT+I Sbjct: 193 PMQGPEDVPLPLLVPAFLTSELKTGFQIGFTIFIPFLIIDLVVASVLMSMGMMMVSPTTI 252 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 253 SLPFKLMLFVLVDGWQLLIGSLAQSF 278 >gi|163794138|ref|ZP_02188111.1| Flagellar biosynthesis pathway [alpha proteobacterium BAL199] gi|159180752|gb|EDP65271.1| Flagellar biosynthesis pathway [alpha proteobacterium BAL199] Length = 253 Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 104/194 (53%), Positives = 140/194 (72%), Gaps = 4/194 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +L+MVT F R +IV +LRT +G PPNLV+ISLALF+T ++M+PTL + G+ Sbjct: 59 APGILVMVTSFTRIVIVLGLLRTALGTQQSPPNLVMISLALFLTGFIMTPTLKEAWTNGV 118 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 QPL+ +I E A V +PF FM REKDL LF DMA T + + ++ Sbjct: 119 QPLIEERIDEIEAFDAVVQPFRGFMLRTVREKDLRLFEDMAQVGPAETGL----NAPLQV 174 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 LIP+FMISELRR+FEIGFL+ LPF+IIDM++A+++M+MGMMM+PP ISLPFK+IFFVL+ Sbjct: 175 LIPAFMISELRRAFEIGFLLYLPFVIIDMVIASVLMSMGMMMVPPVMISLPFKLIFFVLV 234 Query: 232 DGWSLLVENLVKSF 245 DGW ++ +LV+SF Sbjct: 235 DGWYMIAGSLVRSF 248 >gi|260893864|ref|YP_003239961.1| flagellar biosynthetic protein FliP [Ammonifex degensii KC4] gi|260866005|gb|ACX53111.1| flagellar biosynthetic protein FliP [Ammonifex degensii KC4] Length = 223 Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 91/193 (47%), Positives = 135/193 (69%), Gaps = 4/193 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +LI++T F R +IV S+LR+ +G PPN V++ LALF+T ++M+P +R + I+ Sbjct: 34 PAILILMTSFTRIVIVLSLLRSALGTHQAPPNQVLVGLALFLTVFIMAPVYERINQEAIR 93 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P + NQIT A R P FM REKDL+LF+++AH + + R++ Sbjct: 94 PYLANQITRQEAQVRGLRPLKEFMLRQVREKDLALFVNLAHLPQP----VNKEELPLRVI 149 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 IP+F+ISEL+ +F +GFL+ LPFL+IDM+VA+++M+MGM MLPP ISLPFK++ FVL+D Sbjct: 150 IPAFLISELKTAFAMGFLLYLPFLVIDMVVASVLMSMGMFMLPPVMISLPFKLLLFVLVD 209 Query: 233 GWSLLVENLVKSF 245 GW L+V++LV+SF Sbjct: 210 GWYLVVKSLVESF 222 >gi|262166224|ref|ZP_06033961.1| flagellar biosynthesis protein FliP [Vibrio mimicus VM223] gi|262025940|gb|EEY44608.1| flagellar biosynthesis protein FliP [Vibrio mimicus VM223] Length = 299 Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 94/214 (43%), Positives = 141/214 (65%), Gaps = 8/214 (3%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D SI+ I+ + T+L P ++I++T F R ++V SILR MG+ P N VII +A Sbjct: 92 DYSINLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 148 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 LF+TF++M+P ++ E +QP +N QI+ A EP FM TR KDL F++M Sbjct: 149 LFLTFFIMAPVFNQINEQAVQPYLNEQISARQAFDLAQEPMKAFMLKQTRVKDLETFVEM 208 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + S +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM Sbjct: 209 SGS-----QVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 263 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 264 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297 >gi|296133033|ref|YP_003640280.1| flagellar biosynthetic protein FliP [Thermincola sp. JR] gi|296031611|gb|ADG82379.1| flagellar biosynthetic protein FliP [Thermincola potens JR] Length = 262 Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 91/199 (45%), Positives = 142/199 (71%), Gaps = 4/199 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 TILS+AP +LIM T F R ++V S +R+ + + PPN VII LALF+TF++M+PT + Sbjct: 67 TILSLAPAILIMTTAFTRVVVVLSFVRSALSTHTTPPNQVIIGLALFLTFFIMAPTWSQV 126 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 + +QP ++ ++++ A+++ P FM TREKDL+LF+ MA+ T + Sbjct: 127 NKDALQPYLSGKLSQEQALKKAVTPVRDFMFKQTREKDLALFVKMANIKRPRT----HAD 182 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 + +LIP+F ISEL+ +F+IGF+I +PF++IDM++A+ +M+MGM+MLPP ISLPFK++ Sbjct: 183 VPTYVLIPAFTISELKTAFQIGFMIYIPFIVIDMVIASSLMSMGMIMLPPMMISLPFKLL 242 Query: 227 FFVLIDGWSLLVENLVKSF 245 FVL+DGW+L+V +L+ SF Sbjct: 243 LFVLVDGWNLIVRSLIMSF 261 >gi|33601555|ref|NP_889115.1| flagellar biosynthesis protein FliP [Bordetella bronchiseptica RB50] gi|33575991|emb|CAE33071.1| flagellar biosynthetic protein FliP [Bordetella bronchiseptica RB50] Length = 263 Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 101/234 (43%), Positives = 146/234 (62%), Gaps = 6/234 (2%) Query: 14 PELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71 P A+++L + P T+ + +T + T LS P L+M+T F R IIV + Sbjct: 32 PSGALAQATLPALTATPGPNGSETYSLSMQTLLLMTSLSFLPAALLMMTGFTRIIIVLGL 91 Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131 LR+ MG PPN V+I LALF+TFY MSP D+ QPL I TA++R P Sbjct: 92 LRSAMGTAMSPPNHVLIGLALFLTFYTMSPVFDKIYTDAYQPLAAGSIPFETAVERAGSP 151 Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191 FM + TRE DL+LF ++A+ + + RILIP+F+ SEL+ +F+IGF I Sbjct: 152 LHNFMLHQTRENDLTLFANLANLP----AMEDPSQVPMRILIPAFITSELKTAFQIGFTI 207 Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PFLIID++VA+++MA+GMMM+PP +++LPFK++ FVL DGW LL+ +L +SF Sbjct: 208 FIPFLIIDLVVASVLMALGMMMVPPVTVALPFKLMLFVLADGWHLLLGSLAQSF 261 >gi|188534130|ref|YP_001907927.1| flagellar biosynthesis protein FliP [Erwinia tasmaniensis Et1/99] gi|188029172|emb|CAO97044.1| Flagellar biosynthesis protein [Erwinia tasmaniensis Et1/99] Length = 245 Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 92/206 (44%), Positives = 141/206 (68%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T T L+ P +L+M+T F R IIVF +LR +G S PPN V++ L+LF+TF++M Sbjct: 42 VQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLSLFLTFFIM 101 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P D+ QP ++I+ AI + A+P FM TRE DL+LF +A+++ Sbjct: 102 GPVFDKIYTDAYQPFSEDKISMQEAIDKGAQPLREFMLRQTREADLALFARLANTAP--- 158 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 I + + RIL+P+++ SEL+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP +I Sbjct: 159 -IAGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATI 217 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 +LPFK++ FVL+DGW LLV +L +SF Sbjct: 218 ALPFKLMLFVLVDGWQLLVGSLAQSF 243 >gi|260767696|ref|ZP_05876631.1| flagellar biosynthesis protein FliP [Vibrio furnissii CIP 102972] gi|260617205|gb|EEX42389.1| flagellar biosynthesis protein FliP [Vibrio furnissii CIP 102972] gi|315179472|gb|ADT86386.1| flagellar biosynthetic protein FliP [Vibrio furnissii NCTC 11218] Length = 299 Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 90/206 (43%), Positives = 139/206 (67%), Gaps = 5/206 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + T+L P ++I++T F R ++V SILR MG+ P N VI+ +A+F+TF++M Sbjct: 97 LQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIVGIAIFLTFFIM 156 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP L++ + IQP +N QI+ A R EP FM TR KDL F+++A + +N Sbjct: 157 SPVLNKINDQAIQPYLNEQISARQAFDRAQEPMKAFMLKQTRVKDLETFVNIAGAEVQNP 216 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGMMML P + Sbjct: 217 E-----DVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGMMMLSPMIV 271 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW+L++ L SF Sbjct: 272 SLPFKLMLFVLVDGWNLILSTLAGSF 297 >gi|33596149|ref|NP_883792.1| flagellar biosynthesis protein FliP [Bordetella parapertussis 12822] gi|33573152|emb|CAE36802.1| flagellar biosynthetic protein FliP [Bordetella parapertussis] Length = 266 Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 101/234 (43%), Positives = 146/234 (62%), Gaps = 6/234 (2%) Query: 14 PELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71 P A+++L + P T+ + +T + T LS P L+M+T F R IIV + Sbjct: 35 PSGALAQATLPALTATPGPNGSETYSLSMQTLLLMTSLSFLPAALLMMTGFTRIIIVLGL 94 Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131 LR+ MG PPN V+I LALF+TFY MSP D+ QPL I TA++R P Sbjct: 95 LRSAMGTAMSPPNHVLIGLALFLTFYTMSPVFDKIYTDAYQPLAAGSIPFETAVERAGSP 154 Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191 FM + TRE DL+LF ++A+ + + RILIP+F+ SEL+ +F+IGF I Sbjct: 155 LHNFMLHQTRENDLTLFANLANLP----AMEDPSQVPMRILIPAFITSELKTAFQIGFTI 210 Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PFLIID++VA+++MA+GMMM+PP +++LPFK++ FVL DGW LL+ +L +SF Sbjct: 211 FIPFLIIDLVVASVLMALGMMMVPPVTVALPFKLMLFVLADGWHLLLGSLAQSF 264 >gi|331269328|ref|YP_004395820.1| flagellar biosynthetic protein FliP [Clostridium botulinum BKT015925] gi|329125878|gb|AEB75823.1| flagellar biosynthetic protein FliP [Clostridium botulinum BKT015925] Length = 257 Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 91/206 (44%), Positives = 143/206 (69%), Gaps = 3/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + T+LS+ P L+M+T F R IIV +R +G PPN ++I +ALF+T ++M Sbjct: 53 IKLLVMLTVLSLLPSFLVMMTSFTRIIIVLGFMRNALGTQQAPPNQILIGIALFLTIFIM 112 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +PT + I+P + N+IT A+ ++P FM TR+KDL LF+D++ + T Sbjct: 113 APTYKTINKEAIKPFLENKITGQQAMDNASKPMREFMLKQTRDKDLELFLDVSKTDK--T 170 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 ITK D++ ++IPSF+ISEL+ +F+IGFL+ +PFLIID++VA+++M+MGM MLPP I Sbjct: 171 KITK-DNVPMYVVIPSFIISELKTAFKIGFLLYIPFLIIDIVVASVLMSMGMFMLPPVMI 229 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FV++DGW LLV++L+ + Sbjct: 230 SLPFKILLFVMVDGWYLLVKSLIMGY 255 >gi|301165896|emb|CBW25469.1| flagellar biosynthesis protein [Bacteriovorax marinus SJ] Length = 252 Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 99/231 (42%), Positives = 152/231 (65%), Gaps = 7/231 (3%) Query: 18 FAKSSLHDVMNIPADLSISTWIVRTFGI---FTILSIAPILLIMVTCFPRFIIVFSILRT 74 FA+SS ++ + + T +V T + FT+L++AP +LI+ TCF R I+V S +R Sbjct: 25 FAQSSGVNLPGMAINFGNGTNLVDTIQVLVLFTVLTMAPAILILCTCFTRIIVVLSFMRQ 84 Query: 75 GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134 +G S+PPN V+I ALF++ +VM PT ++ + I P + +IT T A+ R+ Sbjct: 85 AIGTQSMPPNQVLIGFALFLSIFVMQPTGEQIYKNAITPYVEKKITTTVALDRIEFSLRG 144 Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194 FM R+ D+ LF D+ + R T ND + LIP+F+ISEL+ +F+IGFL+ +P Sbjct: 145 FMTKQVRKADIGLFYDV---TGRKAPNTIND-VPIHFLIPAFIISELKTAFQIGFLLYIP 200 Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 FLI+DM+VA+++MAMGMMMLPP +SLPFK++ FVL+DGW L+ ++++SF Sbjct: 201 FLILDMVVASVLMAMGMMMLPPVVVSLPFKLLLFVLVDGWQLVTGSILRSF 251 >gi|315498438|ref|YP_004087242.1| flagellar biosynthetic protein flip [Asticcacaulis excentricus CB 48] gi|315416450|gb|ADU13091.1| flagellar biosynthetic protein FliP [Asticcacaulis excentricus CB 48] Length = 268 Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 92/212 (43%), Positives = 145/212 (68%), Gaps = 4/212 (1%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 +++ +V+ G+ T+LS+AP ++IM T F R ++V S+LRT +G+ PPN V+ISLA+F Sbjct: 53 TLTARVVQMLGLLTVLSLAPSIVIMTTSFIRIVVVLSLLRTALGLQQSPPNAVLISLAMF 112 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 ++ VM+PT + + GI+PLM+ ++ A +EP FM + DL+LF+ ++ Sbjct: 113 LSAVVMAPTYQAAYDAGIRPLMDQEMEMPQAFDAASEPVKTFMLSQVDAGDLNLFIRLSK 172 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 N + ++ P+FMISEL+ +F IGFL+ +PFL+ID++VA+++M+MGMMM Sbjct: 173 VEKPK----DNMDLPITVITPAFMISELKTAFLIGFLLFIPFLVIDLVVASVLMSMGMMM 228 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LPP +SLPFK+IFFVL+DGW L+ +LV+SF Sbjct: 229 LPPVVVSLPFKLIFFVLVDGWRLVCGSLVESF 260 >gi|323490154|ref|ZP_08095374.1| flagellar biosynthesis protein FliP [Planococcus donghaensis MPA1U2] gi|323396202|gb|EGA89028.1| flagellar biosynthesis protein FliP [Planococcus donghaensis MPA1U2] Length = 229 Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 96/197 (48%), Positives = 137/197 (69%), Gaps = 10/197 (5%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +LIM+T F R IIV S +RTG+G S+PPN V++ LALF+TF++MSP + + + Sbjct: 40 APGILIMMTSFTRIIIVLSFVRTGLGTQSMPPNQVLVGLALFLTFFIMSPIVVEMNDTAL 99 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY-- 169 QP ++ ++ + A+ P FM NTREKDL+LF + ++ K D IE Sbjct: 100 QPYLDGEMEQQEALDTAVVPLKEFMAKNTREKDLALF-------FKYAELEKPDSIEEIP 152 Query: 170 -RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 L+P+F ISE++ +F+IGF+I +PFLIIDM+VA+ +MAMGMMMLPP ISLPFK++ F Sbjct: 153 LTSLVPAFAISEMKTAFQIGFVIFIPFLIIDMVVASTLMAMGMMMLPPVMISLPFKILLF 212 Query: 229 VLIDGWSLLVENLVKSF 245 VL+DGW L++E+L+ SF Sbjct: 213 VLVDGWYLIIESLLVSF 229 >gi|319649551|ref|ZP_08003707.1| flagellar biosynthesis protein P [Bacillus sp. 2_A_57_CT2] gi|317398713|gb|EFV79395.1| flagellar biosynthesis protein P [Bacillus sp. 2_A_57_CT2] Length = 221 Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 90/194 (46%), Positives = 139/194 (71%), Gaps = 4/194 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +LI++TCF R IIV S +RT + +PPN V+I L+LF+TF++M+PT+ E + Sbjct: 32 APSILILMTCFTRIIIVLSFVRTALATQQMPPNQVLIGLSLFLTFFIMAPTMQEVNEQAL 91 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 PL N +I A ++ + PF FM +TR+KDL+LF+ + + ++ + I Sbjct: 92 TPLFNEEINLEEAYEKASIPFKEFMSAHTRQKDLALFLQYSGAEAPSSI----EDIPLTS 147 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 L+P+F ISE++ +F+IGF+I +PFL+IDM+VA+++M+MGMMMLPP ISLPFK++ FVL+ Sbjct: 148 LVPAFAISEIKTAFQIGFMIFIPFLVIDMVVASVLMSMGMMMLPPVMISLPFKILLFVLV 207 Query: 232 DGWSLLVENLVKSF 245 DGW L+V++L++SF Sbjct: 208 DGWYLVVKSLLQSF 221 >gi|284159406|ref|YP_440590.3| flagellar biosynthesis protein FliP [Burkholderia thailandensis E264] gi|83653869|gb|ABC37932.1| flagellar biosynthetic protein [Burkholderia thailandensis E264] Length = 276 Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 92/206 (44%), Positives = 138/206 (66%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T + T+LS P +L+M+T F R IIV S+LR +G S PPN V++ LALF+T +VM Sbjct: 74 VQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQAIGTASTPPNQVLVGLALFLTLFVM 133 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP LD++ +P + A+QR PF FM TRE DL+LF ++ ++ Sbjct: 134 SPVLDKAYTDAYKPFSEGTLQMDQAVQRGTAPFKTFMLKQTRETDLALFAKISKAA---- 189 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + +L+P+F+ SEL+ F+IGF I +PFLIIDM+VA+++M+MGMMM+ P ++ Sbjct: 190 PMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATV 249 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 250 SLPFKLMLFVLVDGWQLLIGSLAQSF 275 >gi|300854220|ref|YP_003779204.1| flagellar biosynthesis protein FliP [Clostridium ljungdahlii DSM 13528] gi|300434335|gb|ADK14102.1| flagellar biosynthesis protein FliP [Clostridium ljungdahlii DSM 13528] Length = 266 Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 92/199 (46%), Positives = 139/199 (69%), Gaps = 2/199 (1%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T++++ P ++M+T F R I+VF LR+ MG PPN ++I LALFMT ++M P + Sbjct: 69 TVITLLPSFVMMMTSFVRIIVVFGFLRSAMGTQQSPPNSILIGLALFMTVFIMYPVYSKM 128 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 I+P M N+IT+ AI A+P FM T +KDL LF+D A +++ T +N Sbjct: 129 NTNAIEPYMQNKITQQQAIDEGAKPIRSFMLKQTYKKDLQLFIDQAKLNYKVTADGQNAP 188 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 + +++P++MISEL+ +FEIGFLI +PF++IDM+V++++MAMGM MLPPT ISL FK++ Sbjct: 189 L--YVVVPAYMISELKTAFEIGFLIYIPFMVIDMVVSSVLMAMGMFMLPPTMISLAFKLL 246 Query: 227 FFVLIDGWSLLVENLVKSF 245 FV++DGW LLV++L+ SF Sbjct: 247 LFVMVDGWYLLVKSLIVSF 265 >gi|148359333|ref|YP_001250540.1| flagellar biosynthetic protein FliP [Legionella pneumophila str. Corby] gi|148281106|gb|ABQ55194.1| flagellar biosynthetic protein FliP [Legionella pneumophila str. Corby] Length = 249 Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 95/199 (47%), Positives = 138/199 (69%), Gaps = 5/199 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T+L++ P LL+ +T F R IIV SILR +GM P N ++I +ALFMT++VMSP ++ Sbjct: 53 TLLTVLPGLLMAMTSFTRIIIVLSILRQAIGMAQTPTNQILIGIALFMTYFVMSPVFNKI 112 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 E IQP MN +I + A+ +P FM N TR+ DLSLF AH+ ++ D Sbjct: 113 NETAIQPYMNERIDFSLALSNAQKPLRQFMLNQTRKNDLSLFEKFAHNVPKSLD-----E 167 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 I +LIP+F+ SEL+ +F+IGF++ LPFLIID++V++++MAMGMMML P ISLPFK++ Sbjct: 168 IPMSVLIPAFITSELKTAFQIGFILFLPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIM 227 Query: 227 FFVLIDGWSLLVENLVKSF 245 FV++DGW+L++ +L SF Sbjct: 228 LFVMVDGWTLVLGSLASSF 246 >gi|52842016|ref|YP_095815.1| flagellar biosynthesis protein FliP [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|296107380|ref|YP_003619080.1| flagellar biosynthetic protein FliP [Legionella pneumophila 2300/99 Alcoy] gi|52629127|gb|AAU27868.1| flagellar biosynthetic protein FliP [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|295649281|gb|ADG25128.1| flagellar biosynthetic protein FliP [Legionella pneumophila 2300/99 Alcoy] gi|307610489|emb|CBX00061.1| flagellar biosynthetic protein FliP [Legionella pneumophila 130b] Length = 249 Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 95/199 (47%), Positives = 138/199 (69%), Gaps = 5/199 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T+L++ P LL+ +T F R IIV SILR +GM P N ++I +ALFMT++VMSP ++ Sbjct: 53 TLLTVLPGLLMAMTSFTRIIIVLSILRQAIGMAQTPTNQILIGIALFMTYFVMSPVFNKI 112 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 E IQP MN +I + A+ +P FM N TR+ DLSLF AH+ ++ D Sbjct: 113 NETAIQPYMNERIDFSLALSNAQKPLRQFMLNQTRKNDLSLFEKFAHNVPKSLD-----E 167 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 I +LIP+F+ SEL+ +F+IGF++ LPFLIID++V++++MAMGMMML P ISLPFK++ Sbjct: 168 IPMSVLIPAFITSELKTAFQIGFILFLPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIM 227 Query: 227 FFVLIDGWSLLVENLVKSF 245 FV++DGW+L++ +L SF Sbjct: 228 LFVMVDGWTLVLGSLASSF 246 >gi|53717669|ref|YP_106655.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei K96243] gi|52208083|emb|CAH34013.1| flagellar biosynthetic protein [Burkholderia pseudomallei K96243] Length = 253 Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 92/206 (44%), Positives = 138/206 (66%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T + T+LS P +L+M+T F R IIV S+LR +G S PP+ V++ LALF+T +VM Sbjct: 51 VQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQAIGTASTPPSQVLVGLALFLTLFVM 110 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP LDR+ +P + A+QR PF FM TRE DL+LF ++ ++ Sbjct: 111 SPVLDRAYNDAYKPFSEGTLQMDQAVQRGTAPFKAFMLKQTRETDLALFAKISKAAP--- 167 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + +L+P+F+ SEL+ F+IGF I +PFLIIDM+VA+++M+MGMMM+ P ++ Sbjct: 168 -MQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATV 226 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 227 SLPFKLMLFVLVDGWQLLIGSLAQSF 252 >gi|296186695|ref|ZP_06855097.1| flagellar biosynthetic protein FliP [Clostridium carboxidivorans P7] gi|296048732|gb|EFG88164.1| flagellar biosynthetic protein FliP [Clostridium carboxidivorans P7] Length = 258 Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 94/199 (47%), Positives = 138/199 (69%), Gaps = 4/199 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 TIL+I P ++M+T F R I+VF LR MG PPN ++I LALF+T ++M P + Sbjct: 63 TILTILPSFIMMMTSFVRIIVVFGFLRGAMGTQQSPPNTILIGLALFLTVFIMQPVYSKV 122 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 IQP M N+IT+ AI A+P FM T +KD LF+D A +++ ITK++ Sbjct: 123 NTNAIQPYMQNKITQEQAIDEGAKPLRQFMLKYTYKKDFQLFIDTAKVNYK---ITKDNA 179 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 Y +++P+FMISEL+ +F IGF++ +PF+IID++VA+++M+MGM MLPP +SLPFK++ Sbjct: 180 PLY-VVVPAFMISELKTAFMIGFMLYIPFMIIDLVVASVLMSMGMFMLPPAMVSLPFKLL 238 Query: 227 FFVLIDGWSLLVENLVKSF 245 FV++DGW LLV++LV SF Sbjct: 239 LFVMVDGWYLLVKSLVSSF 257 >gi|258621114|ref|ZP_05716148.1| Flagellar biosynthetic protein fliP [Vibrio mimicus VM573] gi|258626187|ref|ZP_05721035.1| Flagellar biosynthetic protein fliP [Vibrio mimicus VM603] gi|262170890|ref|ZP_06038568.1| flagellar biosynthesis protein FliP [Vibrio mimicus MB-451] gi|258581542|gb|EEW06443.1| Flagellar biosynthetic protein fliP [Vibrio mimicus VM603] gi|258586502|gb|EEW11217.1| Flagellar biosynthetic protein fliP [Vibrio mimicus VM573] gi|261891966|gb|EEY37952.1| flagellar biosynthesis protein FliP [Vibrio mimicus MB-451] Length = 299 Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 94/214 (43%), Positives = 141/214 (65%), Gaps = 8/214 (3%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D SI+ I+ + T+L P ++I++T F R ++V SILR MG+ P N VII +A Sbjct: 92 DYSINLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 148 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 LF+TF++M+P ++ E +QP +N QI+ A EP FM TR KDL F++M Sbjct: 149 LFLTFFIMAPVFNQINEQAVQPYLNEQISARQAFDLAQEPMKAFMLKQTRIKDLETFVEM 208 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + S +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM Sbjct: 209 SGS-----QVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 263 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 264 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297 >gi|209522296|ref|ZP_03270923.1| flagellar biosynthetic protein FliP [Burkholderia sp. H160] gi|209497272|gb|EDZ97500.1| flagellar biosynthetic protein FliP [Burkholderia sp. H160] Length = 273 Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 92/207 (44%), Positives = 139/207 (67%), Gaps = 4/207 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T + T+LS P +++M+T F R +IV S+LR +G + PPN V++ LALF+T +VM Sbjct: 71 VQTMLLLTMLSFLPAMVLMMTSFTRIVIVLSLLRQALGTTTTPPNQVLVGLALFLTLFVM 130 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP LD++ G +P + A+ R PF FM TRE DL+LF ++H++ Sbjct: 131 SPVLDKAYNEGYKPFSEGTMPMDQAVSRGVAPFKTFMLRQTRESDLALFARISHAA---- 186 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + +L+PSF+ SEL+ F IGF I +PFLIIDM+VA+++M+MGMMM+ P +I Sbjct: 187 PMQGPEDVPLSLLVPSFVTSELKTGFTIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATI 246 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246 SLPFK++ FVL+DGW LL+ +L +SF+ Sbjct: 247 SLPFKLMLFVLVDGWQLLLGSLAQSFV 273 >gi|242310594|ref|ZP_04809749.1| flagellar biosynthesis protein FliP [Helicobacter pullorum MIT 98-5489] gi|239522992|gb|EEQ62858.1| flagellar biosynthesis protein FliP [Helicobacter pullorum MIT 98-5489] Length = 251 Score = 190 bits (482), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 98/219 (44%), Positives = 146/219 (66%), Gaps = 9/219 (4%) Query: 28 NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87 N P DL I+ + T+L +AP L++M T F R +IVFS LRT MG PP ++ Sbjct: 40 NEPGDL---VAILNIVIVLTLLVLAPSLVLMATSFARILIVFSFLRTAMGTQQSPPTQLL 96 Query: 88 ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147 +S AL +T ++M P + E G++P + +I+ A R ++PF FM NTR KDL+L Sbjct: 97 VSFALILTMFIMEPVVKEGYEKGVKPYVAKEISYQEAFVRASQPFKDFMIRNTRPKDLAL 156 Query: 148 FMDMAHSSHRNTDITKN-DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 F + R + +N + + I +P+F+ISE++ +F+IGFL+ LPFL+IDM++++I+ Sbjct: 157 FYRI-----RGMENPQNAQEVPFTIALPAFIISEMKTAFQIGFLLYLPFLVIDMVISSIL 211 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MAMGMMMLPPT ISLPFK++ F+L+DG++LL NLV+SF Sbjct: 212 MAMGMMMLPPTMISLPFKILIFILVDGFNLLTMNLVESF 250 >gi|330445376|ref|ZP_08309028.1| flagellar biosynthetic protein FliP [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489567|dbj|GAA03525.1| flagellar biosynthetic protein FliP [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 282 Score = 189 bits (481), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 95/214 (44%), Positives = 143/214 (66%), Gaps = 8/214 (3%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D S++ I+ + T L P ++I++T F R ++V SILR MG+ P N VII +A Sbjct: 75 DYSVTLQIL---ALMTALGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 131 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 LF+TF+VMSP +D+ +QP +N QIT A+++ +P FM TR KDL F++M Sbjct: 132 LFLTFFVMSPVIDKINTEAVQPYINEQITAKQALEKAEDPMRQFMLKQTRVKDLETFVNM 191 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + S+ + ++ +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+I+MAMGM Sbjct: 192 SGSTADDPQ-----NVPLTVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASILMAMGM 246 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 247 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 280 >gi|159045807|ref|YP_001534601.1| flagellar biosynthesis protein FliP [Dinoroseobacter shibae DFL 12] gi|157913567|gb|ABV95000.1| flagellar biosynthesis protein FliP [Dinoroseobacter shibae DFL 12] Length = 242 Score = 189 bits (481), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 97/221 (43%), Positives = 145/221 (65%), Gaps = 1/221 (0%) Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85 +N+ + S+S + + T+LSIAP L IM+TCFP + V SILR G+G+ PPN+ Sbjct: 23 AINLGDETSLSARTFQIIALITVLSIAPGLAIMITCFPFMVTVLSILRQGIGLQQSPPNM 82 Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145 +IISLALF+T++VM P + GIQP+++ + + EPF FM+ T + L Sbjct: 83 LIISLALFLTYFVMDPVFREAWSRGIQPMVDGAVDMEEGFRAALEPFIRFMQARTDPETL 142 Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205 + ++ + + D +LIPSF++SE+ ++F+IGFLI LPFLIID+IVA I Sbjct: 143 ARLGNLRMETAGVAPF-ELDAPPISVLIPSFLLSEIEKAFQIGFLIFLPFLIIDLIVAAI 201 Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +M+MGMMM+PP +SLPFK+ FFV+ DGW+LL E L++S++ Sbjct: 202 LMSMGMMMVPPAIVSLPFKLAFFVVADGWTLLSEALLRSYM 242 >gi|295399824|ref|ZP_06809805.1| flagellar biosynthetic protein FliP [Geobacillus thermoglucosidasius C56-YS93] gi|312111664|ref|YP_003989980.1| flagellar biosynthetic protein FliP [Geobacillus sp. Y4.1MC1] gi|294978227|gb|EFG53824.1| flagellar biosynthetic protein FliP [Geobacillus thermoglucosidasius C56-YS93] gi|311216765|gb|ADP75369.1| flagellar biosynthetic protein FliP [Geobacillus sp. Y4.1MC1] Length = 222 Score = 189 bits (481), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 92/195 (47%), Positives = 137/195 (70%), Gaps = 4/195 (2%) Query: 51 IAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMG 110 IAP +LIM+TCF R IIV S +RT +G +PPN V+I LA+F+TF++M+PT + Sbjct: 31 IAPGILIMMTCFTRIIIVLSFVRTSLGTQQMPPNQVLIGLAMFLTFFIMAPTFKEINDQA 90 Query: 111 IQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYR 170 +QPL + +I A +R + P FM +TR+KDL+LF+ + + T I Sbjct: 91 LQPLFSEKINLEQAYERASVPIKEFMSKHTRQKDLALFLSYSGAEKPKT----VQDIPLS 146 Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230 L+P+F ISE++ +F++G +I +PFL+IDMIVA+++M+MGMMMLPP ISLPFK++ FVL Sbjct: 147 TLVPAFAISEIKTAFQMGVMIFIPFLVIDMIVASVLMSMGMMMLPPVMISLPFKILLFVL 206 Query: 231 IDGWSLLVENLVKSF 245 +DGW L+V++L++SF Sbjct: 207 VDGWYLVVKSLLESF 221 >gi|323703181|ref|ZP_08114834.1| flagellar biosynthetic protein FliP [Desulfotomaculum nigrificans DSM 574] gi|323531840|gb|EGB21726.1| flagellar biosynthetic protein FliP [Desulfotomaculum nigrificans DSM 574] Length = 270 Score = 189 bits (481), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 91/200 (45%), Positives = 137/200 (68%), Gaps = 6/200 (3%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 ++L++ P LIM+T F R ++V S LR+ +G PPN V++ LALF+T ++MSP Sbjct: 75 SLLAMVPAFLIMLTSFTRIVVVLSFLRSALGTQQTPPNQVLVGLALFLTIFIMSPVYKDM 134 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-D 165 + IQP + NQ+T A + +P FM TREKDL LF+ +A D KN + Sbjct: 135 NKNAIQPYLANQLTYEQAADKAIQPLKAFMARQTREKDLGLFISVAK-----MDKPKNIN 189 Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225 + +L+P+F+ISEL+ +F+IGF+I +PFL+IDM+VA+ +M+MGM MLPP +SLPFK+ Sbjct: 190 EVPMSVLVPAFVISELKTAFQIGFIIFVPFLVIDMVVASTLMSMGMFMLPPVMVSLPFKL 249 Query: 226 IFFVLIDGWSLLVENLVKSF 245 + FV++DGW L+V++LV+SF Sbjct: 250 LLFVMVDGWYLVVKSLVESF 269 >gi|23099026|ref|NP_692492.1| flagellar biosynthesis protein FliP [Oceanobacillus iheyensis HTE831] gi|22777254|dbj|BAC13527.1| flagellar protein required for flagellar formation [Oceanobacillus iheyensis HTE831] Length = 221 Score = 189 bits (481), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 99/216 (45%), Positives = 143/216 (66%), Gaps = 7/216 (3%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P ++S S V+ + TI S+AP +LI++T F R IIV S +RT + +PPN V+I Sbjct: 13 PTNISTS---VKLLLLLTIFSLAPGILILMTSFTRIIIVLSFVRTSLATQQMPPNQVLIG 69 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 +ALFM+F++M+PT E G+ PL N +IT A + + P FM +TR+KDL LF+ Sbjct: 70 IALFMSFFIMAPTFTEVYEEGLGPLFNEEITLDEAYENASIPLKEFMAQHTRQKDLELFL 129 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 + + T + I L+P+F ISEL+ +F++GFLI +PFLIIDM VA+I+M+M Sbjct: 130 NYTQADPPET----IEDIPLTTLVPAFAISELKTAFQMGFLIFIPFLIIDMAVASILMSM 185 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMMLPP ISLPFK++ FVL+DGW L+ ++L+ F Sbjct: 186 GMMMLPPVMISLPFKILLFVLVDGWYLITQSLLGGF 221 >gi|291326353|ref|ZP_06124191.2| flagellar biosynthetic protein FliP [Providencia rettgeri DSM 1131] gi|291314687|gb|EFE55140.1| flagellar biosynthetic protein FliP [Providencia rettgeri DSM 1131] Length = 215 Score = 189 bits (481), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 91/193 (47%), Positives = 134/193 (69%), Gaps = 4/193 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P LL+M+T F R IIV +LR +G S PPN V++ LALF+TF+VMSP D+ Q Sbjct: 25 PALLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFVMSPVADQVYREAYQ 84 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P ++I+ TA+++ P FM TRE DL+LF +A + +I + + RIL Sbjct: 85 PFSEDKISLETALEKGTAPLRTFMLGQTRESDLALFARIA----KVGEIQEAKDVPLRIL 140 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 +P+F+ SEL+ +F+IGF I +PFLIID++VA+++MA+GMMM+PP ++SLPFK++ FVL+D Sbjct: 141 VPAFITSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVD 200 Query: 233 GWSLLVENLVKSF 245 GW LL+ +L +SF Sbjct: 201 GWQLLLGSLSQSF 213 >gi|300722650|ref|YP_003711940.1| flagellar biosynthesis protein [Xenorhabdus nematophila ATCC 19061] gi|297629157|emb|CBJ89753.1| flagellar biosynthesis [Xenorhabdus nematophila ATCC 19061] Length = 272 Score = 189 bits (481), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 96/229 (41%), Positives = 145/229 (63%), Gaps = 6/229 (2%) Query: 19 AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 A + L +++ P +W V+T T L P L+M+T F R IIV +LR + Sbjct: 46 AAAELPGIISQPLPNGGQSWSLPVQTLIFITALGFIPAALLMMTSFTRIIIVLGLLRNAL 105 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G S PPN V++ LALFMTF++M+P D+ + P ++IT A+ + ++P FM Sbjct: 106 GTPSAPPNQVMLGLALFMTFFIMAPVFDKVYQDAYLPYNEDKITLEAALDKGSKPLRQFM 165 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 TRE DL+LF +A T D + R+L+P+F+ SEL+ +F+IGF + +PFL Sbjct: 166 LRQTRENDLALFARLADQEAFET----ADSVPLRVLVPAFITSELKTAFQIGFTLFIPFL 221 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 222 IIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 270 >gi|15642122|ref|NP_231754.1| flagellar biosynthesis protein FliP [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121727223|ref|ZP_01680390.1| flagellar biosynthetic protein FliP [Vibrio cholerae V52] gi|147674933|ref|YP_001217644.1| flagellar biosynthesis protein FliP [Vibrio cholerae O395] gi|153818972|ref|ZP_01971639.1| flagellar biosynthetic protein FliP [Vibrio cholerae NCTC 8457] gi|153822891|ref|ZP_01975558.1| flagellar biosynthetic protein FliP [Vibrio cholerae B33] gi|227082248|ref|YP_002810799.1| flagellar biosynthetic protein FliP [Vibrio cholerae M66-2] gi|229507792|ref|ZP_04397297.1| flagellar biosynthesis protein FliP [Vibrio cholerae BX 330286] gi|229511971|ref|ZP_04401450.1| flagellar biosynthesis protein FliP [Vibrio cholerae B33] gi|229513774|ref|ZP_04403236.1| flagellar biosynthesis protein FliP [Vibrio cholerae TMA 21] gi|229519107|ref|ZP_04408550.1| flagellar biosynthesis protein FliP [Vibrio cholerae RC9] gi|229522076|ref|ZP_04411493.1| flagellar biosynthesis protein FliP [Vibrio cholerae TM 11079-80] gi|229524125|ref|ZP_04413530.1| flagellar biosynthesis protein FliP [Vibrio cholerae bv. albensis VL426] gi|229607337|ref|YP_002877985.1| flagellar biosynthesis protein FliP [Vibrio cholerae MJ-1236] gi|254226359|ref|ZP_04919948.1| flagellar biosynthetic protein FliP [Vibrio cholerae V51] gi|254291359|ref|ZP_04962152.1| flagellar biosynthetic protein FliP [Vibrio cholerae AM-19226] gi|254849208|ref|ZP_05238558.1| flagellar biosynthesis protein FliP [Vibrio cholerae MO10] gi|255745138|ref|ZP_05419087.1| flagellar biosynthesis protein FliP [Vibrio cholera CIRS 101] gi|262153472|ref|ZP_06028602.1| flagellar biosynthesis protein FliP [Vibrio cholerae INDRE 91/1] gi|262167482|ref|ZP_06035188.1| flagellar biosynthesis protein FliP [Vibrio cholerae RC27] gi|262191372|ref|ZP_06049562.1| flagellar biosynthesis protein FliP [Vibrio cholerae CT 5369-93] gi|297582021|ref|ZP_06943940.1| flagellar biosynthetic protein FliP [Vibrio cholerae RC385] gi|298497855|ref|ZP_07007662.1| flagellar biosynthetic protein FliP [Vibrio cholerae MAK 757] gi|9656673|gb|AAF95268.1| flagellar biosynthetic protein FliP [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121630468|gb|EAX62861.1| flagellar biosynthetic protein FliP [Vibrio cholerae V52] gi|125621109|gb|EAZ49454.1| flagellar biosynthetic protein FliP [Vibrio cholerae V51] gi|126510467|gb|EAZ73061.1| flagellar biosynthetic protein FliP [Vibrio cholerae NCTC 8457] gi|126519587|gb|EAZ76810.1| flagellar biosynthetic protein FliP [Vibrio cholerae B33] gi|146316816|gb|ABQ21355.1| flagellar biosynthetic protein FliP [Vibrio cholerae O395] gi|150422689|gb|EDN14643.1| flagellar biosynthetic protein FliP [Vibrio cholerae AM-19226] gi|227010136|gb|ACP06348.1| flagellar biosynthetic protein FliP [Vibrio cholerae M66-2] gi|227014019|gb|ACP10229.1| flagellar biosynthetic protein FliP [Vibrio cholerae O395] gi|229337706|gb|EEO02723.1| flagellar biosynthesis protein FliP [Vibrio cholerae bv. albensis VL426] gi|229341001|gb|EEO06006.1| flagellar biosynthesis protein FliP [Vibrio cholerae TM 11079-80] gi|229343796|gb|EEO08771.1| flagellar biosynthesis protein FliP [Vibrio cholerae RC9] gi|229348955|gb|EEO13912.1| flagellar biosynthesis protein FliP [Vibrio cholerae TMA 21] gi|229351936|gb|EEO16877.1| flagellar biosynthesis protein FliP [Vibrio cholerae B33] gi|229355297|gb|EEO20218.1| flagellar biosynthesis protein FliP [Vibrio cholerae BX 330286] gi|229369992|gb|ACQ60415.1| flagellar biosynthesis protein FliP [Vibrio cholerae MJ-1236] gi|254844913|gb|EET23327.1| flagellar biosynthesis protein FliP [Vibrio cholerae MO10] gi|255736968|gb|EET92364.1| flagellar biosynthesis protein FliP [Vibrio cholera CIRS 101] gi|262024054|gb|EEY42749.1| flagellar biosynthesis protein FliP [Vibrio cholerae RC27] gi|262030709|gb|EEY49343.1| flagellar biosynthesis protein FliP [Vibrio cholerae INDRE 91/1] gi|262032747|gb|EEY51295.1| flagellar biosynthesis protein FliP [Vibrio cholerae CT 5369-93] gi|297533716|gb|EFH72558.1| flagellar biosynthetic protein FliP [Vibrio cholerae RC385] gi|297542188|gb|EFH78238.1| flagellar biosynthetic protein FliP [Vibrio cholerae MAK 757] Length = 299 Score = 189 bits (481), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 93/214 (43%), Positives = 140/214 (65%), Gaps = 8/214 (3%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D SI+ I+ + T+L P ++I++T F R ++V SILR MG+ P N VII +A Sbjct: 92 DYSINLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 148 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 LF+TF++M+P ++ E +QP +N QIT A EP FM TR DL F++M Sbjct: 149 LFLTFFIMAPVFNQINEQAVQPYLNEQITARQAFDLAQEPLKAFMLKQTRVNDLETFVEM 208 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + + +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM Sbjct: 209 SGA-----QVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 263 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 264 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297 >gi|261344130|ref|ZP_05971774.1| flagellar biosynthetic protein FliP [Providencia rustigianii DSM 4541] gi|282567722|gb|EFB73257.1| flagellar biosynthetic protein FliP [Providencia rustigianii DSM 4541] Length = 247 Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 90/193 (46%), Positives = 134/193 (69%), Gaps = 4/193 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +L+M+T F R IIV +LR +G S PPN V++ LALF+TF+VMSP D+ Q Sbjct: 57 PAMLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFVMSPVADQVYREAYQ 116 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P ++I+ TA+++ P FM TRE DL+LF +A + +I + + RIL Sbjct: 117 PFSEDKISLETALEKGTAPLRTFMLGQTRESDLALFARIA----KVGEIQEAKDVPMRIL 172 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 +P+F+ SEL+ +F+IGF I +PFLIID++VA+++MA+GMMM+PP ++SLPFK++ FVL+D Sbjct: 173 VPAFITSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVD 232 Query: 233 GWSLLVENLVKSF 245 GW LL+ +L +SF Sbjct: 233 GWQLLLGSLSQSF 245 >gi|153825580|ref|ZP_01978247.1| flagellar biosynthetic protein FliP [Vibrio cholerae MZO-2] gi|149740731|gb|EDM54830.1| flagellar biosynthetic protein FliP [Vibrio cholerae MZO-2] Length = 299 Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 93/214 (43%), Positives = 140/214 (65%), Gaps = 8/214 (3%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D SI+ I+ + T+L P ++I++T F R ++V SILR MG+ P N VII +A Sbjct: 92 DYSINLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 148 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 LF+TF++M+P ++ E +QP +N QIT A EP FM TR DL F++M Sbjct: 149 LFLTFFIMAPVFNQINEQAVQPYLNEQITARQAFDLAQEPLKAFMLKQTRVNDLETFVEM 208 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + + +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM Sbjct: 209 SGA-----QVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 263 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 264 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297 >gi|261209859|ref|ZP_05924160.1| flagellar biosynthesis protein FliP [Vibrio sp. RC341] gi|260841045|gb|EEX67570.1| flagellar biosynthesis protein FliP [Vibrio sp. RC341] Length = 299 Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 93/214 (43%), Positives = 141/214 (65%), Gaps = 8/214 (3%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D SI+ I+ + T+L P ++I++T F R ++V SILR MG+ P N VII +A Sbjct: 92 DYSINLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 148 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 LF+TF++M+P ++ E +QP +N QI+ A EP FM TR KDL F++M Sbjct: 149 LFLTFFIMAPVFNQINEQAVQPYLNEQISARQAFDLAQEPMKAFMLKQTRVKDLETFVEM 208 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + + +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM Sbjct: 209 SGA-----QVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 263 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 264 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297 >gi|317129193|ref|YP_004095475.1| flagellar biosynthetic protein FliP [Bacillus cellulosilyticus DSM 2522] gi|315474141|gb|ADU30744.1| flagellar biosynthetic protein FliP [Bacillus cellulosilyticus DSM 2522] Length = 222 Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 91/195 (46%), Positives = 134/195 (68%), Gaps = 4/195 (2%) Query: 51 IAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMG 110 IAP +LI++TCF R ++V S +R+G+ +PPN V++ LALF+TF++M+P E Sbjct: 32 IAPSILILMTCFTRIVVVLSFVRSGLATQQMPPNQVLVGLALFITFFIMAPVFSEVNEQA 91 Query: 111 IQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYR 170 +QP+ ++T+ A A P FM +TREKDL+LFM A T D I Sbjct: 92 LQPMFAGEMTQEEAFDAAALPMKEFMAQHTREKDLALFMGYAGLPRPET----LDDIPLT 147 Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230 L+P+F ISEL+ +F+IGF+I +PFL+IDM+VA+++M+MGMMMLPP I+LPFK++ FV+ Sbjct: 148 ALVPAFAISELKTAFQIGFMIFIPFLVIDMVVASVLMSMGMMMLPPVMIALPFKILLFVM 207 Query: 231 IDGWSLLVENLVKSF 245 +DGW L+V +L+ SF Sbjct: 208 VDGWHLVVRSLLLSF 222 >gi|253682024|ref|ZP_04862821.1| flagellar biosynthetic protein FliP [Clostridium botulinum D str. 1873] gi|253561736|gb|EES91188.1| flagellar biosynthetic protein FliP [Clostridium botulinum D str. 1873] Length = 257 Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 91/206 (44%), Positives = 142/206 (68%), Gaps = 3/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + T+LS+ P L+M+T F R IIV +R +G PPN ++I +ALF+T ++M Sbjct: 53 IKLLVMLTVLSLLPSFLVMMTSFTRIIIVLGFMRNALGTQQAPPNQILIGIALFLTIFIM 112 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +PT + I+P + N+IT AI ++P FM TR+KDL LF+D++ + Sbjct: 113 APTYKTINKEAIKPFIENKITGQQAIDNASKPMREFMLKQTRDKDLELFLDISKTDK--A 170 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 ITK D++ ++IPSF+ISEL+ +F+IGFL+ +PFLIID++VA+++M+MGM MLPP I Sbjct: 171 KITK-DNVPMYVVIPSFIISELKTAFKIGFLLYIPFLIIDIVVASVLMSMGMFMLPPVMI 229 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FV++DGW LLV++L+ + Sbjct: 230 SLPFKILLFVMVDGWYLLVKSLIMGY 255 >gi|262404469|ref|ZP_06081024.1| flagellar biosynthesis protein FliP [Vibrio sp. RC586] gi|262349501|gb|EEY98639.1| flagellar biosynthesis protein FliP [Vibrio sp. RC586] Length = 299 Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 93/214 (43%), Positives = 141/214 (65%), Gaps = 8/214 (3%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D SI+ I+ + T+L P ++I++T F R ++V SILR MG+ P N VII +A Sbjct: 92 DYSINLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 148 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 LF+TF++M+P ++ E +QP +N QI+ A EP FM TR KDL F++M Sbjct: 149 LFLTFFIMAPVFNQINEQAVQPYLNEQISARQAFDLAQEPMKAFMLKQTRVKDLETFVEM 208 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + + +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM Sbjct: 209 SGA-----QVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 263 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 264 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297 >gi|89056669|ref|YP_512120.1| flagellar biosynthesis protein FliP [Jannaschia sp. CCS1] gi|88866218|gb|ABD57095.1| flagellar biosynthetic protein FliP [Jannaschia sp. CCS1] Length = 243 Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 97/213 (45%), Positives = 141/213 (66%), Gaps = 10/213 (4%) Query: 36 STWIVRTF---GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92 S+ R+F + ++LS+AP L +MVTCFP + V SILR +G+ PPN++I+SLAL Sbjct: 37 SSLTARSFQLIALISVLSLAPGLAVMVTCFPFVVTVLSILRQAIGLQQSPPNMLIVSLAL 96 Query: 93 FMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152 F+T++VM+P + + GI PL+ ++T AI + EPF FM N D S + +A Sbjct: 97 FLTYFVMAPVFEEAYRAGIAPLIAGELTPDAAIPLIYEPFRGFMLNRV---DTSTLVSLA 153 Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 D D +LIPSFM+SE+ R+F+IGFL+ LPFL+ID++VA I+M+MGMM Sbjct: 154 EL-RPGADAANPDP---SVLIPSFMLSEVERAFQIGFLVFLPFLVIDLVVAAILMSMGMM 209 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+PP +SLPFK+ FFV+ DGW+L+ LV+S+ Sbjct: 210 MVPPAIVSLPFKLAFFVVADGWALITGALVRSY 242 >gi|254462066|ref|ZP_05075482.1| flagellar biosynthetic protein FliP [Rhodobacterales bacterium HTCC2083] gi|206678655|gb|EDZ43142.1| flagellar biosynthetic protein FliP [Rhodobacteraceae bacterium HTCC2083] Length = 256 Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 89/207 (42%), Positives = 141/207 (68%), Gaps = 4/207 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + T L+I P L+ +T F R IIV SILR MG PPN V+IS+ALF+TFY+M Sbjct: 53 LQILALMTALTILPSFLLGITAFTRVIIVLSILRQAMGTQQTPPNQVLISIALFLTFYIM 112 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +PT ++ E I P +N Q+ AI+ A F+ NTRE +L++F +MA + + Sbjct: 113 APTFEQIYEKAISPYLNGQMQPVAAIETGAAILSEFLILNTRESELAMFAEMAGDAPYES 172 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 N+ + Y +L+P+F+ SEL+ +F+IGFL+ LPFL+ID+++A+I+MA+GMMML P + Sbjct: 173 ----NEDVPYTVLMPAFITSELKTAFQIGFLLFLPFLVIDLVIASILMALGMMMLSPMLV 228 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246 SLPFK++ FVL+DGW++ + ++ +++ Sbjct: 229 SLPFKLLLFVLVDGWAMTIGSIASTYV 255 >gi|171057713|ref|YP_001790062.1| flagellar biosynthesis protein FliP [Leptothrix cholodnii SP-6] gi|170775158|gb|ACB33297.1| flagellar biosynthetic protein FliP [Leptothrix cholodnii SP-6] Length = 262 Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 94/206 (45%), Positives = 137/206 (66%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++T FT LS P +L+M+T F R +IV +LR +G + PPN VI+ L+LF+TF+VM Sbjct: 59 IQTLLFFTALSFLPAVLLMMTGFTRIVIVLGLLRQALGTQAAPPNQVIVGLSLFLTFFVM 118 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +PTLDR +P NQI AI R P FM TR+ DL+LF +A + Sbjct: 119 APTLDRVYADAYKPYAANQIGFEEAIARGEVPMRQFMLKQTRQSDLALFARLA----KLD 174 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 K++ R+L+P+F+ SEL+ +F+IGFLI +PFL+IDM+VA+++M++GMMML P + Sbjct: 175 PAVKSEQAPLRVLVPAFVTSELKSAFQIGFLIFIPFLVIDMVVASVLMSLGMMMLSPVLV 234 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 +LPFK++ FVL DGW+LL+ +L SF Sbjct: 235 ALPFKLMLFVLADGWNLLLGSLAASF 260 >gi|254491717|ref|ZP_05104896.1| flagellar biosynthetic protein FliP [Methylophaga thiooxidans DMS010] gi|224463195|gb|EEF79465.1| flagellar biosynthetic protein FliP [Methylophaga thiooxydans DMS010] Length = 244 Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 101/246 (41%), Positives = 153/246 (62%), Gaps = 6/246 (2%) Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMV 59 +R L L P L A+ + V + ++ V + + T+L++ P L+M+ Sbjct: 1 MRVLLACLLLFAPLLAVAEPGIPAVTVTGNEDGGQSYTVTLQILALMTVLTLLPAALMMM 60 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R IIV +ILR MG+ S P N ++I LALF+T ++M P ++S + + P M+ +I Sbjct: 61 TSFTRIIIVLAILRQAMGVQSTPSNQILIGLALFLTIFIMHPVFNQSYQNAVVPYMDGEI 120 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 TTA ++ ++PF FM TRE D+ LF + ++ + I + +L+PSF+ S Sbjct: 121 EFTTAFEQASQPFKEFMIAQTRETDIELFASIGGYE----ELQSAEDIPFSLLLPSFVTS 176 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+ +F+IGFLI +PFLIID++VA+++MAMGMMML P ISLPFK++ FVLIDGW+LL+ Sbjct: 177 ELKTAFQIGFLIFIPFLIIDLVVASVLMAMGMMMLSPMLISLPFKLMLFVLIDGWALLMG 236 Query: 240 NLVKSF 245 L SF Sbjct: 237 TLASSF 242 >gi|238025697|ref|YP_002909928.1| flagellar biosynthesis protein FliP [Burkholderia glumae BGR1] gi|237874891|gb|ACR27224.1| Flagellar biosynthetic protein FliP [Burkholderia glumae BGR1] Length = 266 Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 92/206 (44%), Positives = 139/206 (67%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T + T+LS P +++M+T F R IIV S++R +G + PPN V++ LALF+T +VM Sbjct: 64 VQTMLLLTMLSFLPAIVLMMTSFTRIIIVLSLMRQALGTATTPPNQVLVGLALFLTLFVM 123 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP +DR+ G +P + A+QR PF FM TRE DL+LF +A + Sbjct: 124 SPVIDRAYNDGYKPFSAGTLPMDQAVQRGLAPFKTFMLKQTREGDLALFAKIAKAPA--- 180 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + +L+P+F+ SEL+ F+IGF I +PFLIID++VA+++M+MGMMM+ PT+I Sbjct: 181 -MQGPEDVPLPLLVPAFVTSELKTGFQIGFTIFIPFLIIDLVVASVLMSMGMMMVSPTTI 239 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 240 SLPFKLMLFVLVDGWQLLIGSLAQSF 265 >gi|229528865|ref|ZP_04418255.1| flagellar biosynthesis protein FliP [Vibrio cholerae 12129(1)] gi|229332639|gb|EEN98125.1| flagellar biosynthesis protein FliP [Vibrio cholerae 12129(1)] gi|327484651|gb|AEA79058.1| Flagellar biosynthesis protein FliP [Vibrio cholerae LMA3894-4] Length = 299 Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 93/214 (43%), Positives = 140/214 (65%), Gaps = 8/214 (3%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D SI+ I+ + T+L P ++I++T F R ++V SILR MG+ P N VII +A Sbjct: 92 DYSINLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 148 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 LF+TF++M+P ++ E +QP +N QIT A EP FM TR DL F++M Sbjct: 149 LFLTFFIMAPVFNQINEQAVQPYLNEQITARQAFDLAQEPLKAFMLKQTRVNDLETFVEM 208 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + + +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM Sbjct: 209 SGA-----QVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 263 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 264 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297 >gi|153213266|ref|ZP_01948678.1| flagellar biosynthetic protein FliP [Vibrio cholerae 1587] gi|124116066|gb|EAY34886.1| flagellar biosynthetic protein FliP [Vibrio cholerae 1587] Length = 287 Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 93/214 (43%), Positives = 140/214 (65%), Gaps = 8/214 (3%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D SI+ I+ + T+L P ++I++T F R ++V SILR MG+ P N VII +A Sbjct: 80 DYSINLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 136 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 LF+TF++M+P ++ E +QP +N QIT A EP FM TR DL F++M Sbjct: 137 LFLTFFIMAPVFNQINEQAVQPYLNEQITARQAFDLAQEPLKAFMLKQTRVNDLETFVEM 196 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + + +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM Sbjct: 197 SGA-----QVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 251 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 252 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 285 >gi|153828653|ref|ZP_01981320.1| flagellar biosynthetic protein FliP [Vibrio cholerae 623-39] gi|148875924|gb|EDL74059.1| flagellar biosynthetic protein FliP [Vibrio cholerae 623-39] Length = 299 Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 93/214 (43%), Positives = 140/214 (65%), Gaps = 8/214 (3%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D SI+ I+ + T+L P ++I++T F R ++V SILR MG+ P N VII +A Sbjct: 92 DYSINLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 148 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 LF+TF++M+P ++ E +QP +N QIT A EP FM TR DL F++M Sbjct: 149 LFLTFFIMAPVFNQINEQAVQPYLNEQITALQAFDLAQEPLKAFMLKQTRVNDLETFVEM 208 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + + +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM Sbjct: 209 SGA-----QVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 263 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 264 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297 >gi|302392379|ref|YP_003828199.1| flagellar biosynthetic protein FliP [Acetohalobium arabaticum DSM 5501] gi|302204456|gb|ADL13134.1| flagellar biosynthetic protein FliP [Acetohalobium arabaticum DSM 5501] Length = 257 Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 91/201 (45%), Positives = 141/201 (70%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T+LS+AP +LIM+T F R +V S++R + +PPN VII LA+F+T +VM+P Sbjct: 60 LLTVLSLAPAILIMLTSFVRIAVVLSLIRRALATRRMPPNQVIIGLAIFLTIFVMAPVWG 119 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + + +QP ++++I + A ++ +P FM TREKD++LF+D+ + Sbjct: 120 QIYDTAVQPYLDDEINQMQAYEQGIKPLRKFMFKQTREKDIALFVDLGEIERPQNQM--- 176 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 I +LIP+F+ISELR +F+IGF+I LPF++IDMIVA+ +M+MGMMMLPP ISLPFK Sbjct: 177 -EIPTYVLIPAFIISELRIAFQIGFIIYLPFIVIDMIVASTLMSMGMMMLPPVMISLPFK 235 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW L++++L+K+F Sbjct: 236 ILLFVLVDGWYLVIKSLIKTF 256 >gi|226327730|ref|ZP_03803248.1| hypothetical protein PROPEN_01603 [Proteus penneri ATCC 35198] gi|225203434|gb|EEG85788.1| hypothetical protein PROPEN_01603 [Proteus penneri ATCC 35198] Length = 256 Score = 189 bits (479), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 100/248 (40%), Positives = 155/248 (62%), Gaps = 11/248 (4%) Query: 3 RYCFFA---LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLI 57 R+ FA + L+ P FA+ ++ P +W V+T T L P +L+ Sbjct: 13 RWRLFASVLVLLLLPTSAFAQ--FPGIITQPLPGGGQSWSLPVQTLIFITALGFIPAVLL 70 Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 M+T F R IIV +LR +G S PPN V++ LALFMTF++M+P D+ + P + Sbjct: 71 MMTSFTRIIIVLGLLRNALGTPSAPPNQVVLGLALFMTFFIMAPVFDKIYQDAYMPFTED 130 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177 QIT A++ ++P FM TRE DL+LF +A + T + + RIL+P+++ Sbjct: 131 QITFEQALENGSKPLRQFMMQQTRETDLALFARLADAPAFET----RESVPMRILVPAYI 186 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 SEL+ +F+IGF+I +PFLIID++VA+++MA+GMMM+PP ++SLPFK++ FVL+DGW L+ Sbjct: 187 TSELKTAFQIGFMIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGWQLI 246 Query: 238 VENLVKSF 245 + +L +SF Sbjct: 247 LGSLAQSF 254 >gi|224373184|ref|YP_002607556.1| flagellar biosynthesis protein FliP [Nautilia profundicola AmH] gi|223589473|gb|ACM93209.1| flagellar biosynthetic protein FliP [Nautilia profundicola AmH] Length = 242 Score = 189 bits (479), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 93/194 (47%), Positives = 133/194 (68%), Gaps = 4/194 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +++++T F R ++VF LR +G PP +++SLAL +TF++M P ++ GI Sbjct: 52 APSIILVMTSFVRLLVVFGFLRQALGTPQSPPTTLLVSLALVLTFFIMEPYAKQAYNTGI 111 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 +P M +I A +PF FM NTREKDL+LF + H + T D + I Sbjct: 112 KPYMEEKIGYDQAFNNAVKPFKKFMIKNTREKDLALFFRIRHLPNPKTI----DDVPLTI 167 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 L+P+FM+SEL+ +FEIGFLI LPFLIIDM+V++I+M++GMMMLPP ISLPFK++ FVL+ Sbjct: 168 LVPAFMLSELKTAFEIGFLIFLPFLIIDMVVSSILMSLGMMMLPPVMISLPFKILVFVLV 227 Query: 232 DGWSLLVENLVKSF 245 DGW+L+V LV+SF Sbjct: 228 DGWNLIVMGLVQSF 241 >gi|298530624|ref|ZP_07018026.1| flagellar biosynthetic protein FliP [Desulfonatronospira thiodismutans ASO3-1] gi|298509998|gb|EFI33902.1| flagellar biosynthetic protein FliP [Desulfonatronospira thiodismutans ASO3-1] Length = 236 Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 92/202 (45%), Positives = 139/202 (68%), Gaps = 4/202 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + TILS+AP +++ +TCF R IIVFS +R +G +PPN V+ +LA+F+T +M+P Sbjct: 39 LLTILSVAPAIVLTITCFTRIIIVFSFIRHAIGTQQMPPNQVLAALAIFLTVAIMAPIGS 98 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + +QP +N +I A+ R P FM +TRE+DLS+F + + Sbjct: 99 EINQTALQPYLNEEIGHEEALSRAEGPMREFMFKHTRERDLSVFYSITGMERPES----R 154 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + + +LIP+FMISEL+ +F+IGFLI +PFLI+DM+VA+I+++MGMMMLPP IS+PFK Sbjct: 155 EDVPTMLLIPAFMISELKTAFQIGFLIYIPFLILDMVVASILLSMGMMMLPPVMISMPFK 214 Query: 225 VIFFVLIDGWSLLVENLVKSFI 246 V+ F+++DGW+LLV +LV SF+ Sbjct: 215 VLLFIMVDGWNLLVGSLVNSFV 236 >gi|153803026|ref|ZP_01957612.1| flagellar biosynthetic protein FliP [Vibrio cholerae MZO-3] gi|124121424|gb|EAY40167.1| flagellar biosynthetic protein FliP [Vibrio cholerae MZO-3] Length = 299 Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 93/214 (43%), Positives = 140/214 (65%), Gaps = 8/214 (3%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D SI+ I+ + T+L P ++I++T F R ++V SILR MG+ P N VII +A Sbjct: 92 DYSINLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 148 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 LF+TF++M+P ++ E +QP +N QIT A EP FM TR DL F++M Sbjct: 149 LFLTFFIMAPVFNQINEQAVQPYLNEQITARQAFDLAQEPLKAFMLKQTRVNDLETFVEM 208 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + + +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM Sbjct: 209 SGA-----QVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 263 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 264 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297 >gi|124265768|ref|YP_001019772.1| flagellar biosynthesis protein FliP [Methylibium petroleiphilum PM1] gi|124258543|gb|ABM93537.1| flagellar biosynthesis protein [Methylibium petroleiphilum PM1] Length = 254 Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 95/206 (46%), Positives = 136/206 (66%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++T FT LS P +L+M+T F R +IV S+LR +G SVPPN V+I L+LF+T +VM Sbjct: 51 IQTLLFFTALSFLPAVLLMMTGFTRIVIVLSLLRQALGTQSVPPNQVLIGLSLFLTLFVM 110 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 PT+D+ +P NQI A+ R P FM TR+ DL LF +A + Sbjct: 111 GPTIDKVYSEAYKPFAANQIAFDEALARGEAPMRSFMLKQTRQSDLMLFARLA----KLD 166 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 K + +R+L+P+F+ SEL+ +F+IGFLI +PFLIIDMIVA+++M++GMMML P + Sbjct: 167 PAVKGEDAPFRVLVPAFVTSELKSAFQIGFLIFIPFLIIDMIVASVLMSLGMMMLSPVLV 226 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 +LPFK++ FVL DGW+LL+ +L SF Sbjct: 227 ALPFKLMLFVLADGWNLLLGSLAASF 252 >gi|24052334|gb|AAN43540.1| flagellar biosynthesis [Shigella flexneri 2a str. 301] gi|313650170|gb|EFS14583.1| flagellar biosynthetic protein FliP [Shigella flexneri 2a str. 2457T] gi|332757282|gb|EGJ87619.1| flagellar biosynthetic protein FliP [Shigella flexneri 2747-71] gi|332757514|gb|EGJ87849.1| flagellar biosynthetic protein FliP [Shigella flexneri K-671] gi|332766686|gb|EGJ96890.1| flagellar biosynthetic protein FliP [Shigella flexneri 2930-71] gi|333017554|gb|EGK36866.1| flagellar biosynthetic protein FliP [Shigella flexneri K-304] Length = 204 Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 91/205 (44%), Positives = 140/205 (68%), Gaps = 4/205 (1%) Query: 41 RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100 +T T L+ P +L+M+T F R IIVF +LR +G S PPN V++ LALF+TF++MS Sbjct: 2 QTLVFITSLTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMS 61 Query: 101 PTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD 160 P +D+ QP +I+ A+++ A+P FM TRE DL LF +A++ Sbjct: 62 PVIDKIYVDAYQPFSEEKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTG----P 117 Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220 + + + RIL+P+++ SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+ Sbjct: 118 LQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIA 177 Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245 LPFK++ FVL+DGW LLV +L +SF Sbjct: 178 LPFKLMLFVLVDGWQLLVGSLAQSF 202 >gi|270262391|ref|ZP_06190662.1| flagellar biosynthetic protein FliP [Serratia odorifera 4Rx13] gi|270043075|gb|EFA16168.1| flagellar biosynthetic protein FliP [Serratia odorifera 4Rx13] Length = 241 Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 97/239 (40%), Positives = 154/239 (64%), Gaps = 9/239 (3%) Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66 L LV+P A + L +++ P +W V+T + T LS P +L+M+T F R I Sbjct: 8 LLLVSPA---ALAQLPGLISQPLADGGQSWSLPVQTLVLLTSLSFLPAMLLMMTSFTRII 64 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IV +LR +G S PPN V++ LALF+TF++MSP D+ + P ++I+ A+ Sbjct: 65 IVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISLDAALD 124 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 + ++P FM TRE DL+L+ +A+ + + + RIL+P+++ SEL+ +F+ Sbjct: 125 KGSQPLREFMLRQTRETDLALYARLAN----QPPLAGPEAVPMRILLPAYVTSELKTAFQ 180 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGF + +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 181 IGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 239 >gi|121586791|ref|ZP_01676573.1| flagellar biosynthetic protein FliP [Vibrio cholerae 2740-80] gi|121548958|gb|EAX58997.1| flagellar biosynthetic protein FliP [Vibrio cholerae 2740-80] Length = 299 Score = 189 bits (479), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 93/214 (43%), Positives = 140/214 (65%), Gaps = 8/214 (3%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D SI+ I+ + T+L P ++I++T F R ++V SILR MG+ P N VII +A Sbjct: 92 DYSINLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 148 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 LF+TF++M+P ++ E +QP +N QIT A EP FM TR DL F++M Sbjct: 149 LFLTFFIMAPVFNQINEQAVQPYLNEQITARQAFDLAQEPLKAFMLKQTRVNDLETFVEM 208 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + + +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM Sbjct: 209 SGA-----QVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 263 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 264 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297 >gi|220932509|ref|YP_002509417.1| flagellar biosynthetic protein FliP [Halothermothrix orenii H 168] gi|219993819|gb|ACL70422.1| flagellar biosynthetic protein FliP [Halothermothrix orenii H 168] Length = 254 Score = 188 bits (478), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 95/194 (48%), Positives = 133/194 (68%), Gaps = 4/194 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP LL+MVT F R I+V ++R + +PPN V+I LALF+T ++M+P E + Sbjct: 64 APALLVMVTSFTRVIVVLGLIRQALATRRMPPNQVLIGLALFLTVFIMAPVWQDINEQAL 123 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 QP +NN+IT A R +P FM TREKDL+LF++M I + Sbjct: 124 QPYLNNEITTQQAYDRGIKPIRDFMFKQTREKDLALFVNMTGIERPEN----RADIPTYV 179 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 LIP+F+ISEL+ +F+IGFLI LPFL+IDM+VA+I+M+MGM+MLPP ISLPFK++ F+L+ Sbjct: 180 LIPAFVISELKTAFQIGFLIYLPFLMIDMVVASILMSMGMLMLPPIIISLPFKLLLFILV 239 Query: 232 DGWSLLVENLVKSF 245 DGW L++E+LVK+F Sbjct: 240 DGWYLVIESLVKTF 253 >gi|148546750|ref|YP_001266852.1| flagellar biosynthesis protein FliP [Pseudomonas putida F1] gi|148510808|gb|ABQ77668.1| flagellar biosynthetic protein FliP [Pseudomonas putida F1] Length = 251 Score = 188 bits (478), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 93/201 (46%), Positives = 134/201 (66%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 I T LS P +I++T F R IIVFSILR +G+ P N ++ +ALF+T ++M+P + Sbjct: 52 IMTALSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQLLNGMALFLTMFIMAPVFE 111 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 R + +QP + Q+T AI + P FM TR+ DL LFM ++ + TDI Sbjct: 112 RVNQDALQPYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDLDLFMRLS----KRTDIAGP 167 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D + IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA+++MAMGMMML P ISLPFK Sbjct: 168 DQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFK 227 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW+L++ L SF Sbjct: 228 IMLFVLVDGWALIMGTLASSF 248 >gi|253998478|ref|YP_003050541.1| flagellar biosynthesis protein FliP [Methylovorus sp. SIP3-4] gi|253985157|gb|ACT50014.1| flagellar biosynthetic protein FliP [Methylovorus sp. SIP3-4] Length = 258 Score = 188 bits (478), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 90/193 (46%), Positives = 135/193 (69%), Gaps = 4/193 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +L+M+T F R IIV S+LR +G + PPN V++ LALF+TF+VMSP +D+ Q Sbjct: 69 PAVLLMMTGFTRIIIVLSLLRQALGTPTSPPNQVLVGLALFLTFFVMSPVMDKIYVEAYQ 128 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 PL N+IT A+++ A P FM TRE D++LFM ++ R+ + + R+L Sbjct: 129 PLSENKITLQEALEKGAAPLKTFMLKQTREADIALFMRIS----RSDAVDGPEQTPLRVL 184 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 +P+FM SEL+ +F+IGF I +PFLIIDM+VA+++M+MGMMM+ P ++LPFK++ FVL+D Sbjct: 185 VPAFMTSELKTAFQIGFAIFIPFLIIDMVVASVLMSMGMMMVSPAIVALPFKLMLFVLVD 244 Query: 233 GWSLLVENLVKSF 245 GW L++ +L +SF Sbjct: 245 GWQLVLGSLAESF 257 >gi|311086976|gb|ADP67056.1| putative bifunctional flagellar biosynthesis protein FliO/FliP [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 379 Score = 188 bits (478), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 100/217 (46%), Positives = 143/217 (65%), Gaps = 8/217 (3%) Query: 32 DLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 D TW V +T T L+ P L+M+T F R +IVF +LR +G PPN +++ Sbjct: 166 DDGSQTWSVPVQTLVFLTSLTFLPAFLLMMTSFTRIVIVFGLLRNALGTPYAPPNQILLG 225 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 LALF+TF++MSPT ++ + P ++ AI + + P FM N R DL LF Sbjct: 226 LALFLTFFIMSPTFEKIYKDAYVPFSQEKMNMEDAILKGSMPLKKFMLNQIRTPDLELFS 285 Query: 150 DMAH-SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208 +AH SS++N KND I RIL+PSF+ SEL+ +F+IGF I +PFLIID++VA+++MA Sbjct: 286 KLAHISSYKN----KND-IPMRILLPSFITSELKTAFQIGFTIFIPFLIIDLVVASVLMA 340 Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +GMMM+PP++ISLPFK++ FVL+DGW LL+ +L SF Sbjct: 341 LGMMMVPPSTISLPFKLMLFVLVDGWQLLITSLAHSF 377 >gi|219681460|ref|YP_002467845.1| flagellar biosynthetic protein FliP [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471135|ref|ZP_05635134.1| type III secretion system protein [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219624303|gb|ACL30458.1| flagellar biosynthetic protein FliP [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 379 Score = 188 bits (478), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 100/217 (46%), Positives = 143/217 (65%), Gaps = 8/217 (3%) Query: 32 DLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 D TW V +T T L+ P L+M+T F R +IVF +LR +G PPN +++ Sbjct: 166 DDGSQTWSVPVQTLVFLTSLTFLPAFLLMMTSFTRIVIVFGLLRNALGTPYAPPNQILLG 225 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 LALF+TF++MSPT ++ + P ++ AI + + P FM N R DL LF Sbjct: 226 LALFLTFFIMSPTFEKIYKDAYVPFSQEKMNMEDAILKGSMPLKKFMLNQIRTPDLELFS 285 Query: 150 DMAH-SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208 +AH SS++N KND I RIL+PSF+ SEL+ +F+IGF I +PFLIID++VA+++MA Sbjct: 286 KLAHISSYKN----KND-IPMRILLPSFITSELKTAFQIGFTIFIPFLIIDLVVASVLMA 340 Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +GMMM+PP++ISLPFK++ FVL+DGW LL+ +L SF Sbjct: 341 LGMMMVPPSTISLPFKLMLFVLVDGWQLLITSLAHSF 377 >gi|219682016|ref|YP_002468400.1| flagellar biosynthetic protein FliP [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219621749|gb|ACL29905.1| flagellar biosynthetic protein FliP [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311085824|gb|ADP65906.1| putative bifunctional flagellar biosynthesis protein FliO/FliP [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086397|gb|ADP66478.1| putative bifunctional flagellar biosynthesis protein FliO/FliP [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087553|gb|ADP67632.1| putative bifunctional flagellar biosynthesis protein FliO/FliP [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 379 Score = 188 bits (478), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 100/217 (46%), Positives = 143/217 (65%), Gaps = 8/217 (3%) Query: 32 DLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 D TW V +T T L+ P L+M+T F R +IVF +LR +G PPN +++ Sbjct: 166 DDGSQTWSVPVQTLVFLTSLTFLPAFLLMMTSFTRIVIVFGLLRNALGTPYAPPNQILLG 225 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 LALF+TF++MSPT ++ + P ++ AI + + P FM N R DL LF Sbjct: 226 LALFLTFFIMSPTFEKIYKDAYVPFSQEKMNMEDAILKGSMPLKKFMLNQIRTPDLELFS 285 Query: 150 DMAH-SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208 +AH SS++N KND I RIL+PSF+ SEL+ +F+IGF I +PFLIID++VA+++MA Sbjct: 286 KLAHISSYKN----KND-IPMRILLPSFITSELKTAFQIGFTIFIPFLIIDLVVASVLMA 340 Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +GMMM+PP++ISLPFK++ FVL+DGW LL+ +L SF Sbjct: 341 LGMMMVPPSTISLPFKLMLFVLVDGWQLLITSLAHSF 377 >gi|74317628|ref|YP_315368.1| flagellar biosynthesis protein FliP [Thiobacillus denitrificans ATCC 25259] gi|74057123|gb|AAZ97563.1| flagellar transport protein FliP [Thiobacillus denitrificans ATCC 25259] Length = 253 Score = 188 bits (478), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 95/193 (49%), Positives = 130/193 (67%), Gaps = 4/193 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P L+M+T F R IIV S+LR +G S PPN V+I LALF+T +VM PT D+ Q Sbjct: 64 PAALLMMTSFTRIIIVLSLLRHALGTQSSPPNQVLIGLALFLTLFVMGPTFDKIYVEAYQ 123 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 PL N+I A+ + A P FM TRE DL+LF+ M+ S T I R+L Sbjct: 124 PLAENRIQMQEALDKGAVPLRAFMLKQTRESDLALFVKMSRSPAPKT----AADIPMRVL 179 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 IP+++ SEL+ +F+IGF + +PFLIIDM+VA+I+MAMGMMM+ P ++LPFK+I FVL+D Sbjct: 180 IPAYITSELKTAFQIGFAVFIPFLIIDMVVASILMAMGMMMVSPAIVALPFKIILFVLVD 239 Query: 233 GWSLLVENLVKSF 245 GW+LL+ +L +SF Sbjct: 240 GWNLLLGSLAQSF 252 >gi|237752332|ref|ZP_04582812.1| flagellar biosynthesis protein FliP [Helicobacter winghamensis ATCC BAA-430] gi|229375821|gb|EEO25912.1| flagellar biosynthesis protein FliP [Helicobacter winghamensis ATCC BAA-430] Length = 249 Score = 188 bits (478), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 99/216 (45%), Positives = 142/216 (65%), Gaps = 7/216 (3%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P DL + IV I T+L +AP L++M T F R +IVFS LRT MG PP +++S Sbjct: 40 PGDLVTTLNIVV---ILTLLVLAPSLILMATSFARILIVFSFLRTAMGTQQSPPTQLLVS 96 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 AL +T ++M P E GI+P + +I A R ++PF FM NTR KDL+LF Sbjct: 97 FALILTMFIMEPVAKEGYEKGIKPYIAKEIPYDEAFLRASQPFKDFMIRNTRPKDLALFY 156 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 + + + T + I +P+F+ISE++ +F+IGFL+ LPFL+IDM++++I+MAM Sbjct: 157 RIRNLENPQT----AQDVPLSIALPAFIISEMKTAFQIGFLLYLPFLVIDMVISSILMAM 212 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMMLPPT ISLPFK++ F+L+DG++LL NLV+SF Sbjct: 213 GMMMLPPTMISLPFKILIFILVDGFNLLTMNLVQSF 248 >gi|327441040|dbj|BAK17405.1| flagellar biosynthesis pathway, component FliP [Solibacillus silvestris StLB046] Length = 221 Score = 188 bits (478), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 89/194 (45%), Positives = 136/194 (70%), Gaps = 4/194 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP LLI++T F R +IV S RT + +PPN VII LALF+TF++M+PT + E + Sbjct: 32 APSLLILMTSFARIVIVLSFTRTALATNQMPPNQVIIGLALFLTFFIMAPTFQQVNEQAL 91 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 QPL + +I A R PF FM +TR+KDL LF++ + + ++ + I + Sbjct: 92 QPLFDEEINLEEAYDRATIPFKQFMAQHTRQKDLELFIEYNQAEYPDS----IEEIPMTL 147 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 L+P+F +SE++ +F++GF+I +PFL+IDM+VA+ +M+MGMMMLPP ISLPFK++ FVL+ Sbjct: 148 LVPAFALSEIKTAFQMGFMIFIPFLVIDMVVASTLMSMGMMMLPPVMISLPFKILLFVLV 207 Query: 232 DGWSLLVENLVKSF 245 DGW L++++L++SF Sbjct: 208 DGWYLVMKSLLQSF 221 >gi|15616704|ref|NP_239916.1| type III secretion system protein [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|12644517|sp|P57184|FLIP_BUCAI RecName: Full=Flagellar biosynthetic protein fliP gi|25403546|pir||B84939 flagellar biosynthetic protein fliP [imported] - Buchnera sp. (strain APS) gi|10038767|dbj|BAB12802.1| flagellar biosynthetic protein fliP [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 379 Score = 188 bits (478), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 100/217 (46%), Positives = 143/217 (65%), Gaps = 8/217 (3%) Query: 32 DLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 D TW V +T T L+ P L+M+T F R +IVF +LR +G PPN +++ Sbjct: 166 DDGSQTWSVPVQTLVFLTSLTFLPAFLLMMTSFTRIVIVFGLLRNALGTPYAPPNQILLG 225 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 LALF+TF++MSPT ++ + P ++ AI + + P FM N R DL LF Sbjct: 226 LALFLTFFIMSPTFEKIYKDAYVPFSQEKMNMEDAILKGSMPLKKFMLNQIRTPDLELFS 285 Query: 150 DMAH-SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208 +AH SS++N KND I RIL+PSF+ SEL+ +F+IGF I +PFLIID++VA+++MA Sbjct: 286 KLAHISSYKN----KND-IPMRILLPSFITSELKTAFQIGFTIFIPFLIIDLVVASVLMA 340 Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +GMMM+PP++ISLPFK++ FVL+DGW LL+ +L SF Sbjct: 341 LGMMMVPPSTISLPFKLMLFVLVDGWQLLITSLAHSF 377 >gi|288573013|ref|ZP_06391370.1| flagellar biosynthetic protein FliP [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568754|gb|EFC90311.1| flagellar biosynthetic protein FliP [Dethiosulfovibrio peptidovorans DSM 11002] Length = 256 Score = 188 bits (477), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 90/216 (41%), Positives = 148/216 (68%), Gaps = 7/216 (3%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P D+S S IV + T+LS+AP +L+MVT F R ++V +R +G+ PPN VI++ Sbjct: 47 PQDVSTSLQIV---ALLTVLSVAPAILLMVTSFTRVLVVLGFVRNALGLQQTPPNQVIVT 103 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 LALF++ ++M+PT D G+ P M +I A++ V P FM + TRE++LSL + Sbjct: 104 LALFLSLFIMAPTWDVMYSQGLSPYMEGRIGSMEALENVTTPLRRFMLSQTREEELSLMV 163 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 M+ ++ D I ++L+P++M+SEL+ +F++G +I +PF+++DMI+++++M+M Sbjct: 164 SMSGLERPSSA----DDIPNKVLLPAYMLSELKSAFQMGIVIYVPFIVVDMIISSVLMSM 219 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GM+MLPP ISLPFKV+ FV+ DGW+L+V +L++SF Sbjct: 220 GMIMLPPMMISLPFKVLLFVMADGWNLVVVSLIRSF 255 >gi|332531133|ref|ZP_08407047.1| flagellar biosynthesis protein FliP [Hylemonella gracilis ATCC 19624] gi|332039418|gb|EGI75830.1| flagellar biosynthesis protein FliP [Hylemonella gracilis ATCC 19624] Length = 267 Score = 188 bits (477), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 94/206 (45%), Positives = 135/206 (65%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++T FT LS P +L+M+T F R +IV S+LR +G S PPN VII L+LF+TF+VM Sbjct: 64 IQTLLFFTALSFLPAVLLMMTGFTRIVIVLSLLRQALGTQSAPPNQVIIGLSLFLTFFVM 123 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 PT DR QP N +T A+ R P FM TR+ DL+LF+ ++ T Sbjct: 124 GPTFDRVYAEAYQPYTRNALTFEQAVDRAEVPVREFMSKQTRQSDLALFVRLSKLDAATT 183 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 ++ R+LIP+F+ SEL+ +F+ GFLI +PFL+IDM+VA+++M++GMMML P + Sbjct: 184 ----AENAPMRVLIPAFVTSELKTAFQFGFLIFIPFLVIDMVVASVLMSLGMMMLSPVLV 239 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 +LPFK++ FVL DGW+LL+ +L SF Sbjct: 240 ALPFKLMLFVLADGWNLLIGSLAASF 265 >gi|85058021|ref|YP_453723.1| flagellar biosynthesis protein FliP [Sodalis glossinidius str. 'morsitans'] gi|84778541|dbj|BAE73318.1| flagellar protein FliP [Sodalis glossinidius str. 'morsitans'] Length = 256 Score = 188 bits (477), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 92/206 (44%), Positives = 138/206 (66%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T + T L+ P L++++ F R IIV SILR +G S PPN +++ LAL +TF+VM Sbjct: 53 VQTLVLLTSLTFLPAALLLMSGFTRIIIVLSILRNALGTPSAPPNQILLGLALCLTFFVM 112 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP LD P +QI TAI+R A+P FM TRE DLSL+ + + Sbjct: 113 SPVLDSIYRDAYLPFSQDQIDMDTAIERAAQPLRQFMLTQTRETDLSLYARLG----KQA 168 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + +IL+P+F+ SEL+ +F+IGF + +PFLIID+++A+++MA+GMMMLPPT++ Sbjct: 169 AFAGPEQVPMQILLPAFVTSELKTAFQIGFTLFIPFLIIDLVIASVLMALGMMMLPPTTV 228 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FV++DGW LL+ +L +SF Sbjct: 229 SLPFKLMLFVMVDGWQLLLGSLAQSF 254 >gi|134300235|ref|YP_001113731.1| flagellar biosynthesis protein FliP [Desulfotomaculum reducens MI-1] gi|134052935|gb|ABO50906.1| flagellar biosynthetic protein FliP [Desulfotomaculum reducens MI-1] Length = 257 Score = 188 bits (477), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 92/200 (46%), Positives = 139/200 (69%), Gaps = 6/200 (3%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T+LS+ P L+M+T F R I+V S LR+ +G PPN V+I LALF+T ++M+P Sbjct: 62 TLLSMVPAFLMMLTSFTRIIVVLSFLRSALGTQQTPPNQVLIGLALFLTIFIMNPVYQDI 121 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-D 165 + IQP + NQ+T A + A+P FM TREKDL LF+++A D KN + Sbjct: 122 NKNSIQPYLANQLTYEQATDQAAKPLRNFMVRQTREKDLGLFLNIAK-----MDKPKNAN 176 Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225 + +L+P+F+ISEL+ +F+IGF++ +PFL+IDM+VA+ +M+MGM MLPP ++LPFK+ Sbjct: 177 EVPMSVLVPAFVISELKTAFQIGFILFVPFLVIDMVVASTLMSMGMFMLPPVMVALPFKL 236 Query: 226 IFFVLIDGWSLLVENLVKSF 245 + FV++DGW L+V++LV+SF Sbjct: 237 LLFVMVDGWYLVVKSLVESF 256 >gi|188589499|ref|YP_001920217.1| flagellar biosynthetic protein FliP [Clostridium botulinum E3 str. Alaska E43] gi|251778351|ref|ZP_04821271.1| flagellar biosynthetic protein FliP [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188499780|gb|ACD52916.1| flagellar biosynthetic protein FliP [Clostridium botulinum E3 str. Alaska E43] gi|243082666|gb|EES48556.1| flagellar biosynthetic protein FliP [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 259 Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 92/200 (46%), Positives = 142/200 (71%), Gaps = 3/200 (1%) Query: 46 FTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDR 105 FTIL++ P ++IM+T F R +IVFS +++ MG+ PN ++ LALF+T ++MSP + Sbjct: 62 FTILAVLPSIVIMLTSFTRIVIVFSFIKSAMGVQQAIPNQILTGLALFLTIFIMSPVYNE 121 Query: 106 SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165 QP + IT+ AI+ ++P FM TREKDL LF+++ + ++T+ + Sbjct: 122 VNTKAFQPYIEQSITQEEAIEIGSKPIKDFMLKQTREKDLELFVEINNVDKE--ELTR-E 178 Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225 +I + LIP+F ISEL+ +F+IGFLI LPF++IDM+VA+++M+MGMMMLPP +SLPFK+ Sbjct: 179 NIPFTTLIPAFAISELKTAFQIGFLIYLPFIVIDMVVASVLMSMGMMMLPPAMVSLPFKL 238 Query: 226 IFFVLIDGWSLLVENLVKSF 245 + FV++DGW LLV++L+ SF Sbjct: 239 LLFVMVDGWYLLVKSLIMSF 258 >gi|158320529|ref|YP_001513036.1| flagellar biosynthetic protein FliP [Alkaliphilus oremlandii OhILAs] gi|158140728|gb|ABW19040.1| flagellar biosynthetic protein FliP [Alkaliphilus oremlandii OhILAs] Length = 269 Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 88/197 (44%), Positives = 141/197 (71%), Gaps = 8/197 (4%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +LIMVT F R IIV S LR + PP V+I LALF+TF++M+P + + Sbjct: 77 APAILIMVTSFTRIIIVLSFLRNALATQQTPPTQVLIGLALFLTFFIMAPVASEINQNAL 136 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN---DHIE 168 QP +N +IT+ A++ +P FM TREKDL+LF++ + N+++++N + I+ Sbjct: 137 QPFLNQEITQQQAVEEAMDPLREFMFRQTREKDLALFIEAS-----NSEVSENFQVEDIK 191 Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 LIP+F+ISEL+ +F++GF++ +PF+++DM+VA+++M+MGMMMLPP ISLPFK++ F Sbjct: 192 TTTLIPAFIISELKTAFQMGFVLFIPFIVLDMVVASVLMSMGMMMLPPAMISLPFKLMLF 251 Query: 229 VLIDGWSLLVENLVKSF 245 V++DGW++L+++L+ SF Sbjct: 252 VMVDGWNVLIKSLLLSF 268 >gi|15596643|ref|NP_250137.1| flagellar biosynthesis protein FliP [Pseudomonas aeruginosa PAO1] gi|107100880|ref|ZP_01364798.1| hypothetical protein PaerPA_01001910 [Pseudomonas aeruginosa PACS2] gi|116049391|ref|YP_791806.1| flagellar biosynthesis protein FliP [Pseudomonas aeruginosa UCBPP-PA14] gi|218892681|ref|YP_002441550.1| flagellar biosynthesis protein FliP [Pseudomonas aeruginosa LESB58] gi|254234545|ref|ZP_04927868.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa C3719] gi|254239796|ref|ZP_04933118.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa 2192] gi|296390187|ref|ZP_06879662.1| flagellar biosynthesis protein FliP [Pseudomonas aeruginosa PAb1] gi|313106445|ref|ZP_07792676.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa 39016] gi|12230927|sp|Q51468|FLIP_PSEAE RecName: Full=Flagellar biosynthetic protein fliP gi|9947397|gb|AAG04835.1|AE004574_6 flagellar biosynthetic protein FliP [Pseudomonas aeruginosa PAO1] gi|115584612|gb|ABJ10627.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa UCBPP-PA14] gi|126166476|gb|EAZ51987.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa C3719] gi|126193174|gb|EAZ57237.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa 2192] gi|218772909|emb|CAW28721.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa LESB58] gi|310879178|gb|EFQ37772.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa 39016] Length = 255 Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 93/201 (46%), Positives = 134/201 (66%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 I T LS P ++++T F R IIVFSILR +G+ S P N V++ LALF+T +VM+P D Sbjct: 56 IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFD 115 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + +QP +N QI A+Q+ P FM TR DL LF+ ++ + TDI Sbjct: 116 KINSQALQPYLNEQIPAQEALQKAEVPLKAFMLAQTRTSDLELFVRLS----KRTDIGSP 171 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + IL+P+F+ SEL+ +F+IGF+I +PFLIID++V++++MAMGMMML P ISLPFK Sbjct: 172 EATPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMMMLSPLIISLPFK 231 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW+L++ L SF Sbjct: 232 IMLFVLVDGWALIIGTLAGSF 252 >gi|197285499|ref|YP_002151371.1| flagellar biosynthetic protein [Proteus mirabilis HI4320] gi|194682986|emb|CAR43419.1| flagellar biosynthetic protein [Proteus mirabilis HI4320] Length = 256 Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 101/248 (40%), Positives = 154/248 (62%), Gaps = 11/248 (4%) Query: 3 RYCFFALFLVT---PELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLI 57 R+ FA L+ P FA+ V++ P +W V+T T L P +L+ Sbjct: 13 RWPLFASVLILSLLPSHAFAQ--FPSVISHPLPGGGQSWSLPVQTLIFITALGFIPAVLL 70 Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 M+T F R IIV +LR +G S PPN V++ LALFMTF++M+P D+ + P + Sbjct: 71 MMTSFTRIIIVLGLLRNALGTPSAPPNQVVLGLALFMTFFIMAPVFDKIYQDAYLPFSED 130 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177 +IT A+ ++P FM TRE DL+LF +A + T D + RIL+P+++ Sbjct: 131 KITFEQALDNGSQPLRQFMMQQTRETDLALFARLADAPAFET----RDSVPMRILVPAYI 186 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 SEL+ +F+IGF+I +PFLIID++VA+++MA+GMMM+PP ++SLPFK++ FVL+DGW L+ Sbjct: 187 TSELKTAFQIGFMIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGWQLI 246 Query: 238 VENLVKSF 245 + +L +SF Sbjct: 247 LGSLAQSF 254 >gi|313200553|ref|YP_004039211.1| flagellar biosynthetic protein flip [Methylovorus sp. MP688] gi|312439869|gb|ADQ83975.1| flagellar biosynthetic protein FliP [Methylovorus sp. MP688] Length = 270 Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 90/193 (46%), Positives = 135/193 (69%), Gaps = 4/193 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +L+M+T F R IIV S+LR +G + PPN V++ LALF+TF+VMSP +D+ Q Sbjct: 81 PAVLLMMTGFTRIIIVLSLLRQALGTPTSPPNQVLVGLALFLTFFVMSPVMDKIYVEAYQ 140 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 PL N+IT A+++ A P FM TRE D++LFM ++ R+ + + R+L Sbjct: 141 PLSENKITLQEALEKGAAPLKTFMLKQTREADIALFMRIS----RSDAVDGPEQTPLRVL 196 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 +P+FM SEL+ +F+IGF I +PFLIIDM+VA+++M+MGMMM+ P ++LPFK++ FVL+D Sbjct: 197 VPAFMTSELKTAFQIGFAIFIPFLIIDMVVASVLMSMGMMMVSPAIVALPFKLMLFVLVD 256 Query: 233 GWSLLVENLVKSF 245 GW L++ +L +SF Sbjct: 257 GWQLVLGSLAESF 269 >gi|261407968|ref|YP_003244209.1| flagellar biosynthetic protein FliP [Paenibacillus sp. Y412MC10] gi|329929296|ref|ZP_08283049.1| flagellar biosynthetic protein FliP [Paenibacillus sp. HGF5] gi|261284431|gb|ACX66402.1| flagellar biosynthetic protein FliP [Paenibacillus sp. Y412MC10] gi|328936665|gb|EGG33108.1| flagellar biosynthetic protein FliP [Paenibacillus sp. HGF5] Length = 250 Score = 187 bits (476), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 89/194 (45%), Positives = 135/194 (69%), Gaps = 4/194 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +L+++T F R +IV +RT +G PPN V+I LALF+T +VM+PTL E+ + Sbjct: 59 APAILVLMTSFTRIVIVLGFVRTSLGTQQTPPNQVLIGLALFLTLFVMAPTLSSMNEVAL 118 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 QP + +IT+ A+ + +P FM +TREKDL LFM+ + + + I + Sbjct: 119 QPYLKGEITQAEALDKAQDPMKKFMFAHTREKDLLLFMNYTGAEKPES----YEDIPLTV 174 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 L+P+F ISEL+ F++GF+I +PFL+ID++VA+++MAMGMMMLPP ISLPFK++ FVL+ Sbjct: 175 LVPAFAISELKTGFQMGFMIFIPFLVIDIVVASVLMAMGMMMLPPVMISLPFKILLFVLV 234 Query: 232 DGWSLLVENLVKSF 245 DGW L+V++++ SF Sbjct: 235 DGWYLVVKSMLMSF 248 >gi|82702484|ref|YP_412050.1| flagellar biosynthesis protein FliP [Nitrosospira multiformis ATCC 25196] gi|82410549|gb|ABB74658.1| flagellar biosynthetic protein FliP [Nitrosospira multiformis ATCC 25196] Length = 262 Score = 187 bits (476), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 87/193 (45%), Positives = 134/193 (69%), Gaps = 4/193 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +L+M+T F R IIV S+LR +G S PPN V++ LALF+TF+VMSP D+ + Q Sbjct: 73 PAVLLMMTGFTRVIIVLSLLRQALGTQSSPPNQVLVGLALFLTFFVMSPVFDKIYQDAYQ 132 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P + N++T A+++ A P FM TRE DL+LF+ ++ N + + R+L Sbjct: 133 PYVENRMTMEQALEKGAVPLKAFMLKQTRETDLALFVKLSGRPQLNGP----EEVSLRVL 188 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 +P+F+ SEL+ +F+IGF + +PFLIIDM+VA+++M+MGMMM+ P ++LPFK++ FVL+D Sbjct: 189 VPAFVTSELKTAFQIGFAVFIPFLIIDMVVASVLMSMGMMMVSPALVALPFKIMLFVLVD 248 Query: 233 GWSLLVENLVKSF 245 GW +L+ +L +SF Sbjct: 249 GWHMLIGSLAESF 261 >gi|167464152|ref|ZP_02329241.1| flagellar biosynthesis protein FliP [Paenibacillus larvae subsp. larvae BRL-230010] Length = 257 Score = 187 bits (476), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 87/194 (44%), Positives = 137/194 (70%), Gaps = 4/194 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP LI++T F R +IV +RT +G +PPN V++ LALF+T ++M+PTL ++ + Sbjct: 66 APAFLILMTSFTRIVIVLGFVRTSLGTQQMPPNQVLVGLALFLTLFIMAPTLGDINQVAV 125 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 QP + ++ +T A+++ AEP FM ++TR KDL LF+D +++ N + Sbjct: 126 QPYIKGELNQTQALEKAAEPIKKFMWSHTRPKDLQLFLDYSNAEKPNGP----EDTPIAA 181 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 L+P+F ISEL+ +F++GF+I +PFL+IDMI+++ +MAMGMMMLPP ISLPFK++ FVL+ Sbjct: 182 LVPAFAISELKTAFQMGFMIFIPFLVIDMIISSTLMAMGMMMLPPVMISLPFKILLFVLV 241 Query: 232 DGWSLLVENLVKSF 245 DGW L+V++L+ S+ Sbjct: 242 DGWYLVVKSLLVSY 255 >gi|293395593|ref|ZP_06639876.1| flagellar biosynthetic protein FliP [Serratia odorifera DSM 4582] gi|291421912|gb|EFE95158.1| flagellar biosynthetic protein FliP [Serratia odorifera DSM 4582] Length = 259 Score = 187 bits (476), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 94/229 (41%), Positives = 150/229 (65%), Gaps = 6/229 (2%) Query: 19 AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 A + L +++ P +W V+T + T LS P +L+M+T F R IIV +LR + Sbjct: 33 AIAQLPGLISQPLAGGGQSWTLPVQTLVLLTSLSFLPAMLLMMTSFTRIIIVLGLLRNAL 92 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G + PPN V++ LALF+TF++M+P D+ + P ++I+ TAI + A+P FM Sbjct: 93 GTPTAPPNQVMLGLALFLTFFIMAPVFDKVYQDAYLPFSQDKISMETAIDQGAQPLREFM 152 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 TRE DL+L+ +A+ + + + RIL+P+++ SEL+ +F+IGF + +PFL Sbjct: 153 LRQTREADLALYARLANLP----PLAGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFL 208 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 209 IIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 257 >gi|90579937|ref|ZP_01235745.1| flagellar biosynthesis protein [Vibrio angustum S14] gi|90438822|gb|EAS64005.1| flagellar biosynthesis protein [Vibrio angustum S14] Length = 282 Score = 187 bits (476), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 92/206 (44%), Positives = 137/206 (66%), Gaps = 5/206 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + T L P ++I++T F R ++V SILR MG+ P N VII +ALF+TF+VM Sbjct: 80 LQILALMTALGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFVM 139 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP +D+ +QP +N QIT A+ + +P FM TR KDL F++M+ S+ + Sbjct: 140 SPVIDKINANAVQPYINEQITAKEALAKAEDPMRQFMLKQTRVKDLETFVNMSGSTADDP 199 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+I+MAMGMMML P + Sbjct: 200 Q-----TVPLTVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASILMAMGMMMLSPMIV 254 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW+L++ L SF Sbjct: 255 SLPFKLMLFVLVDGWNLILSTLAGSF 280 >gi|85859180|ref|YP_461382.1| flagellar biosynthesis protein FliP [Syntrophus aciditrophicus SB] gi|85722271|gb|ABC77214.1| flagellar biosynthetic protein [Syntrophus aciditrophicus SB] Length = 262 Score = 187 bits (476), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 90/207 (43%), Positives = 140/207 (67%), Gaps = 4/207 (1%) Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98 +++ I T+LS+ P +L+M+T F R +IV S+LR MG +P N +II L+LF+TF++ Sbjct: 59 VIQLLFILTVLSLTPAILLMLTSFTRIVIVLSLLRQAMGTQQMPSNQIIIGLSLFLTFFI 118 Query: 99 MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 MSP ++P + +I+ AI+R P FM TREKD++LF+ ++ Sbjct: 119 MSPVWQSVHSEALKPYYDEEISGEQAIERAVIPVKAFMLKQTREKDIALFLQISKGKRPE 178 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 K + +L+P+F+ISEL+ +F+IGFL+ LPF IIDM+VA+++++MGMMMLPP Sbjct: 179 ----KPADLALSVLVPAFVISELKTAFQIGFLLFLPFFIIDMVVASVLLSMGMMMLPPIM 234 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 +SLPFK++ FVL+DGW L++ +LV+SF Sbjct: 235 MSLPFKLLLFVLVDGWYLIIGSLVQSF 261 >gi|188025878|ref|ZP_02997695.1| hypothetical protein PROSTU_02049 [Providencia stuartii ATCC 25827] gi|188020828|gb|EDU58868.1| hypothetical protein PROSTU_02049 [Providencia stuartii ATCC 25827] Length = 185 Score = 187 bits (476), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 89/186 (47%), Positives = 129/186 (69%), Gaps = 4/186 (2%) Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R IIV +LR +G S PPN V++ LALF+TF+VMSP D++ QP ++I Sbjct: 2 TSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFVMSPVADQAYREAYQPFSEDKI 61 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 + TA++R PF FM TRE DL+LF +A +I + + RIL+P+F+ S Sbjct: 62 SLETALERGTAPFRTFMLGQTRESDLALFARIAKVG----EIQEAKDVPMRILVPAFITS 117 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+ +F+IGF I +PFLIID++VA+++MA+GMMM+PP ++SLPFK++ FVL+DGW LL+ Sbjct: 118 ELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGWQLLLG 177 Query: 240 NLVKSF 245 +L +SF Sbjct: 178 SLSQSF 183 >gi|322382378|ref|ZP_08056285.1| flagellar biosynthesis protein FliP [Paenibacillus larvae subsp. larvae B-3650] gi|321153731|gb|EFX46106.1| flagellar biosynthesis protein FliP [Paenibacillus larvae subsp. larvae B-3650] Length = 255 Score = 187 bits (476), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 87/194 (44%), Positives = 137/194 (70%), Gaps = 4/194 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP LI++T F R +IV +RT +G +PPN V++ LALF+T ++M+PTL ++ + Sbjct: 64 APAFLILMTSFTRIVIVLGFVRTSLGTQQMPPNQVLVGLALFLTLFIMAPTLGDINQVAV 123 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 QP + ++ +T A+++ AEP FM ++TR KDL LF+D +++ N + Sbjct: 124 QPYIKGELNQTQALEKAAEPIKKFMWSHTRPKDLQLFLDYSNAEKPNGP----EDTPIAA 179 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 L+P+F ISEL+ +F++GF+I +PFL+IDMI+++ +MAMGMMMLPP ISLPFK++ FVL+ Sbjct: 180 LVPAFAISELKTAFQMGFMIFIPFLVIDMIISSTLMAMGMMMLPPVMISLPFKILLFVLV 239 Query: 232 DGWSLLVENLVKSF 245 DGW L+V++L+ S+ Sbjct: 240 DGWYLVVKSLLVSY 253 >gi|308068668|ref|YP_003870273.1| flagellar biosynthetic protein fliP [Paenibacillus polymyxa E681] gi|310641559|ref|YP_003946317.1| flagellar transport protein flip [Paenibacillus polymyxa SC2] gi|305857947|gb|ADM69735.1| Flagellar biosynthetic protein fliP [Paenibacillus polymyxa E681] gi|309246509|gb|ADO56076.1| Flagellar transport protein FliP [Paenibacillus polymyxa SC2] Length = 251 Score = 187 bits (476), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 89/202 (44%), Positives = 141/202 (69%), Gaps = 6/202 (2%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T++S+AP LL+++T F R +IV +RT +G +PPN V++ LALF+T ++M+PT Sbjct: 53 LITVISVAPALLVLMTSFTRIVIVLGFVRTSLGTQQMPPNQVLVGLALFLTLFIMAPTFS 112 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 E +QP + IT++ A+ + + P FM ++TREKDL LFM + + KN Sbjct: 113 AMNETALQPYLKGDITQSQALDKASVPIKTFMFSHTREKDLLLFMK-----YTKMEKPKN 167 Query: 165 -DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 I +++P++ ISEL+ +F++GF+I +PFL+ID++V++ +MAMGMMMLPP ISLPF Sbjct: 168 YQDIPLTVMVPAYAISELKTAFQMGFMIFIPFLVIDIVVSSTLMAMGMMMLPPVMISLPF 227 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K++ FVL+DGW L+V++L+ SF Sbjct: 228 KILLFVLVDGWYLVVKSLLLSF 249 >gi|20807873|ref|NP_623044.1| flagellar biosynthesis protein FliP [Thermoanaerobacter tengcongensis MB4] gi|20516437|gb|AAM24648.1| Flagellar biosynthesis/type III secretory pathway protein [Thermoanaerobacter tengcongensis MB4] Length = 221 Score = 187 bits (476), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 101/225 (44%), Positives = 153/225 (68%), Gaps = 8/225 (3%) Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80 S+L + P++LS S IV T+L++AP +LIM+T F R +IV + LR +G+ Sbjct: 4 SNLVSSVTSPSNLSTSLQIVLLL---TVLTLAPSILIMMTSFTRIVIVLAFLRNALGLQQ 60 Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140 +PPN V+I LALF+TFY+M+P I+P + QI + A QR +P FM T Sbjct: 61 MPPNQVLIGLALFLTFYIMAPVGYDINNNAIKPYVEGQINQYEAYQRAIKPLKNFMLRQT 120 Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200 R+ DL+LF+++A + K + + R++IP+F+ISEL+ +FEIGF+I +PFL+ID+ Sbjct: 121 RQNDLALFVNLAK-----IKVDKVEDLPMRVVIPAFIISELKTAFEIGFIIYIPFLVIDI 175 Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IVA+++M+MGM MLPP ISLPFKV+ F+L+DGW+L+V++L+ F Sbjct: 176 IVASVLMSMGMFMLPPVLISLPFKVLLFILVDGWNLVVKSLILGF 220 >gi|89075523|ref|ZP_01161934.1| flagellar biosynthesis protein [Photobacterium sp. SKA34] gi|89048795|gb|EAR54366.1| flagellar biosynthesis protein [Photobacterium sp. SKA34] Length = 282 Score = 187 bits (476), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 92/206 (44%), Positives = 137/206 (66%), Gaps = 5/206 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + T L P ++I++T F R ++V SILR MG+ P N VII +ALF+TF+VM Sbjct: 80 LQILALMTALGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFVM 139 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP +D+ +QP +N QIT A+ + +P FM TR KDL F++M+ S+ + Sbjct: 140 SPVIDKINADAVQPYINEQITAKEALAKAEDPMRQFMLKQTRVKDLETFVNMSGSTADDP 199 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+I+MAMGMMML P + Sbjct: 200 QT-----VPLTVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASILMAMGMMMLSPMIV 254 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW+L++ L SF Sbjct: 255 SLPFKLMLFVLVDGWNLILSTLAGSF 280 >gi|221640808|ref|YP_002527070.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides KD131] gi|221161589|gb|ACM02569.1| Type III secretion system inner membrane P protein [Rhodobacter sphaeroides KD131] Length = 238 Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 92/212 (43%), Positives = 137/212 (64%), Gaps = 5/212 (2%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 S++T V+ + T+LS+ P L +M+TCFP + V SILR +G+ PPN++I+SLALF Sbjct: 31 SLATRSVQLIAVITLLSLVPALAMMITCFPFIVTVLSILRQAIGLQQAPPNMLIVSLALF 90 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 +T+YVM P + GI PL N++ A+ A PF FM L+ A Sbjct: 91 LTWYVMDPVFTEAWTKGIAPLTRNELDLPQALAAAAIPFRSFMAGRIDPDTLA-----AL 145 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 + R + + +L+PSF++SE++R+FEIGFLI LPFLIID++V+ ++M+MGMMM Sbjct: 146 QALRPGPAAPPSEVSFSVLVPSFLLSEIQRAFEIGFLIYLPFLIIDLVVSAVLMSMGMMM 205 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PP +S+PFK+ FFV+ DGWSL+ LV+S+ Sbjct: 206 VPPAVVSMPFKLAFFVVADGWSLISGALVRSY 237 >gi|315648123|ref|ZP_07901224.1| flagellar biosynthetic protein FliP [Paenibacillus vortex V453] gi|315276769|gb|EFU40112.1| flagellar biosynthetic protein FliP [Paenibacillus vortex V453] Length = 250 Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 89/194 (45%), Positives = 137/194 (70%), Gaps = 4/194 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +L+++T F R +IV +RT +G PPN V+I LALF+T +VM+PTL ++ + Sbjct: 59 APAILVLMTSFTRIVIVLGFVRTSLGTMQTPPNQVLIGLALFLTLFVMAPTLSSINDVAL 118 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 QP + +I++T A+ + +P FM ++TREKDL LFM+ + T + I + Sbjct: 119 QPYLKGEISQTEALDKAQDPMKKFMFSHTREKDLLLFMNYTGAEKPET----YEDIPLTV 174 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 L+P+F ISEL+ F++GF+I +PFL+ID++VA+++MAMGMMMLPP ISLPFK++ FVL+ Sbjct: 175 LVPAFAISELKTGFQMGFMIFIPFLVIDIVVASVLMAMGMMMLPPVMISLPFKILLFVLV 234 Query: 232 DGWSLLVENLVKSF 245 DGW L+V++++ SF Sbjct: 235 DGWYLVVKSMLMSF 248 >gi|227355990|ref|ZP_03840382.1| flagellar biosynthetic protein [Proteus mirabilis ATCC 29906] gi|227163978|gb|EEI48880.1| flagellar biosynthetic protein [Proteus mirabilis ATCC 29906] Length = 256 Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 101/248 (40%), Positives = 153/248 (61%), Gaps = 11/248 (4%) Query: 3 RYCFFALFLVT---PELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLI 57 R+ FA L+ P FA+ V++ P W V+T T L P +L+ Sbjct: 13 RWPLFASVLILSLLPSHAFAQ--FPSVISHPLPGGGQNWSLPVQTLIFITALGFIPAVLL 70 Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 M+T F R IIV +LR +G S PPN V++ LALFMTF++M+P D+ + P + Sbjct: 71 MMTSFTRIIIVLGLLRNALGTPSAPPNQVVLGLALFMTFFIMAPVFDKIYQDAYLPFSED 130 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177 +IT A+ ++P FM TRE DL+LF +A + T D + RIL+P+++ Sbjct: 131 KITFEQALDNGSQPLRQFMMQQTRETDLALFARLADAPAFET----RDSVPMRILVPAYI 186 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 SEL+ +F+IGF+I +PFLIID++VA+++MA+GMMM+PP ++SLPFK++ FVL+DGW L+ Sbjct: 187 TSELKTAFQIGFMIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGWQLI 246 Query: 238 VENLVKSF 245 + +L +SF Sbjct: 247 LGSLAQSF 254 >gi|148976423|ref|ZP_01813129.1| flagellar biosynthesis protein P [Vibrionales bacterium SWAT-3] gi|145964246|gb|EDK29502.1| flagellar biosynthesis protein P [Vibrionales bacterium SWAT-3] Length = 309 Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 94/218 (43%), Positives = 143/218 (65%), Gaps = 8/218 (3%) Query: 28 NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87 N D SI+ I+ + T+L P ++I++T F R ++V SILR MG+ P N VI Sbjct: 98 NGGEDYSINLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVI 154 Query: 88 ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147 I +A+F+TF++MSP +++ E +QP +N QIT A P FM TR KDL Sbjct: 155 IGIAIFLTFFIMSPVINQVNEQAVQPYLNEQITARQAFDVAQGPIKSFMLKQTRIKDLET 214 Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 F++++ S ++T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++M Sbjct: 215 FVEISGS-----EVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLM 269 Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 AMGMMML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 270 AMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 307 >gi|256830495|ref|YP_003159223.1| flagellar biosynthetic protein FliP [Desulfomicrobium baculatum DSM 4028] gi|256579671|gb|ACU90807.1| flagellar biosynthetic protein FliP [Desulfomicrobium baculatum DSM 4028] Length = 231 Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 94/217 (43%), Positives = 139/217 (64%), Gaps = 4/217 (1%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 PA+ + + T+LS+AP ++ VT F R IIVF LR MG +PPN V+ S Sbjct: 19 PAEPQKVAVALEIMALLTMLSMAPAFVLTVTSFTRIIIVFHFLRQAMGTQQMPPNQVLAS 78 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 LA+FMT +M PT + +QP +N +I A++R P F+ +TREKDLS+F Sbjct: 79 LAIFMTVVIMMPTGRTINDTALQPYLNEEIGYGEALERAETPLRTFLFKHTREKDLSVFF 138 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 + D + IL+P+++ISEL+ F+IGFLI +PFLI+DM+VA+I+++M Sbjct: 139 SITGLERPQ----NKDEVPTMILVPAYLISELKTGFQIGFLIYIPFLILDMVVASILLSM 194 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 GMMMLPP +SLPFK++ FV++DGW+L++ +LV SF+ Sbjct: 195 GMMMLPPVMVSLPFKILLFVMVDGWNLIIGSLVNSFV 231 >gi|120554901|ref|YP_959252.1| flagellar biosynthesis protein FliP [Marinobacter aquaeolei VT8] gi|120324750|gb|ABM19065.1| flagellar biosynthetic protein FliP [Marinobacter aquaeolei VT8] Length = 253 Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 88/206 (42%), Positives = 143/206 (69%), Gaps = 5/206 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + T L+ P +L+M+T F R I+VF+ILR +G+ + P N +++ LALF++ ++M Sbjct: 51 LQILALMTALTFLPAMLMMMTSFTRIIVVFAILRQALGLQATPSNQILLGLALFLSIFIM 110 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P L+ + +G+QP + ++T A++ ++PF FM TRE DL+LFM +A + Sbjct: 111 KPVLEEANRVGLQPYLQEEVTSLEAVELASQPFRKFMLEQTREDDLALFMRIADVQYE-- 168 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 T D + + IL+P+F+ SEL+ +F+IGF++ +PFLIIDM+VA+++MAMGMMML P I Sbjct: 169 --TPQD-VSFWILMPAFVTSELKTAFQIGFILFIPFLIIDMVVASVLMAMGMMMLSPIII 225 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW+L++ L S+ Sbjct: 226 SLPFKIMLFVLVDGWALIMGTLAASY 251 >gi|163738043|ref|ZP_02145459.1| flagellar biosynthetic protein FliP [Phaeobacter gallaeciensis BS107] gi|163742561|ref|ZP_02149947.1| flagellar biosynthetic protein FliP [Phaeobacter gallaeciensis 2.10] gi|161384146|gb|EDQ08529.1| flagellar biosynthetic protein FliP [Phaeobacter gallaeciensis 2.10] gi|161388659|gb|EDQ13012.1| flagellar biosynthetic protein FliP [Phaeobacter gallaeciensis BS107] Length = 247 Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 93/212 (43%), Positives = 136/212 (64%), Gaps = 3/212 (1%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 SIS ++ + T+LS+AP LLIM+TCFP + V SILR +G+ PPN+++ISLALF Sbjct: 37 SISARSIQLILLITVLSLAPGLLIMITCFPFLVTVLSILRQAIGLQQAPPNMLMISLALF 96 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 +T++VM P + GI PL+ Q+ T ++R +PF VFM D F +A Sbjct: 97 LTYFVMEPVFTEAWTTGINPLIEEQLDVETGLERALQPFRVFMAARL---DPDTFYAIAD 153 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 I L+ SFM+SE+ R+F++GFL+ LPFL+ID++VA ++M+MGMMM Sbjct: 154 LRPSTAGIDPTADAPLSTLVSSFMLSEIARAFQVGFLVFLPFLVIDLVVAAVLMSMGMMM 213 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PP +S+PFK+ FFV+ DGWSL+ LV+S+ Sbjct: 214 VPPAVVSMPFKLAFFVVADGWSLIASALVRSY 245 >gi|332799191|ref|YP_004460690.1| flagellar biosynthetic protein FliP [Tepidanaerobacter sp. Re1] gi|332696926|gb|AEE91383.1| flagellar biosynthetic protein FliP [Tepidanaerobacter sp. Re1] Length = 258 Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 95/201 (47%), Positives = 139/201 (69%), Gaps = 3/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + TILS+AP +L ++T F R IIV S +R G+G+ VPP V+I LALF+T +VM+P Sbjct: 60 LLTILSLAPSILTLLTSFTRTIIVLSFVRNGLGVQQVPPTQVLIGLALFITVFVMAPVWT 119 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 IQP MN +I + A++R P FM TREKDL+LF+ H + T + Sbjct: 120 EINSEAIQPYMNQEIDTSEALRRSQIPLRNFMFRQTREKDLALFV---HYAKLETPLNTL 176 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D I +LIPSF+ISEL+ +F++GF+I +PFL+IDMIV++ +M+MGM+MLPP ISLPFK Sbjct: 177 DDIPTYVLIPSFIISELKTAFQMGFIIFIPFLVIDMIVSSTLMSMGMLMLPPIMISLPFK 236 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FV++DGW+L++ +++ F Sbjct: 237 ILLFVMVDGWNLVINSILAGF 257 >gi|90411033|ref|ZP_01219047.1| flagellar biosynthesis protein [Photobacterium profundum 3TCK] gi|90328246|gb|EAS44557.1| flagellar biosynthesis protein [Photobacterium profundum 3TCK] Length = 284 Score = 187 bits (474), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 96/214 (44%), Positives = 141/214 (65%), Gaps = 8/214 (3%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D S++ I+ G+ T L P ++I++T F R ++V SILR MG+ P N VII +A Sbjct: 77 DYSVTLQIL---GLMTALGFLPAIVILMTSFTRIVVVLSILRQAMGLQQTPSNQVIIGIA 133 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 LFMTF+VMSP +D+ +QP +N +IT A + P FM TR KDL F++M Sbjct: 134 LFMTFFVMSPVIDKVNIDAVQPYINEEITAAQAFETAQVPLRQFMLKQTRVKDLESFVNM 193 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + S+ T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM Sbjct: 194 SGSTA-----TAPEDVPITVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 248 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 249 MMLSPMIVSLPFKLMLFVLVDGWNLILTTLAGSF 282 >gi|269961630|ref|ZP_06175992.1| Flagellar biosynthetic protein fliP [Vibrio harveyi 1DA3] gi|269833671|gb|EEZ87768.1| Flagellar biosynthetic protein fliP [Vibrio harveyi 1DA3] Length = 289 Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 92/214 (42%), Positives = 140/214 (65%), Gaps = 8/214 (3%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D S++ I+ + T+L P ++I++T F R ++V SILR MG+ P N VII +A Sbjct: 82 DYSVTLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 138 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 LF+TF++MSP L+ + +QP +N Q+T A P FM TR KDL F++M Sbjct: 139 LFLTFFIMSPVLNEINDQAVQPYLNEQVTAREAFDAAQAPMKAFMLKQTRIKDLETFVNM 198 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + ++T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM Sbjct: 199 SGE-----EVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 253 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 254 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287 >gi|319944172|ref|ZP_08018448.1| flagellar biosynthetic protein FliP [Lautropia mirabilis ATCC 51599] gi|319742467|gb|EFV94878.1| flagellar biosynthetic protein FliP [Lautropia mirabilis ATCC 51599] Length = 245 Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 98/240 (40%), Positives = 153/240 (63%), Gaps = 3/240 (1%) Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRF 65 AL P V+A+++L AD +TW V +T F+ LS P +L+++T F R Sbjct: 5 ALLAGAPLDVWAQATLSLQSTAAAD-GGTTWSVPVQTLLFFSALSFIPAVLLLMTSFTRI 63 Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 IIV S+LR +G+ + PPN V++ ++LF+T ++MSPTLDR QPL +I TA+ Sbjct: 64 IIVLSLLRQALGLQASPPNQVLVGISLFLTAFIMSPTLDRIYTEAYQPLAEKRIDFETAL 123 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185 Q+ + P FM TR DL LF +A + + ++ ++P+F+ISEL+ +F Sbjct: 124 QKGSVPLRDFMLKQTRASDLELFARLARVKAPDDKPLSAQDMPFKAIVPAFVISELKTAF 183 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +IGF+I +PF++ID+I A+++M++GMMM+ P ++LPFK++ FVL DGW+LLV +LV SF Sbjct: 184 QIGFMIFIPFILIDLICASVLMSLGMMMVSPVLVALPFKLVLFVLADGWNLLVGSLVASF 243 >gi|260772332|ref|ZP_05881248.1| flagellar biosynthesis protein FliP [Vibrio metschnikovii CIP 69.14] gi|260611471|gb|EEX36674.1| flagellar biosynthesis protein FliP [Vibrio metschnikovii CIP 69.14] Length = 299 Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 94/214 (43%), Positives = 143/214 (66%), Gaps = 8/214 (3%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D SI+ I+ + T+L P ++I++T F R ++V SILR MG+ P N VII +A Sbjct: 92 DYSINLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 148 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 +F+TF++MSP L++ + +QP +N QI+ A +P FM TR KDL F+++ Sbjct: 149 IFLTFFIMSPVLNQINDQAVQPYLNEQISARQAFDLAQDPMKSFMLKQTRLKDLETFVNI 208 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 A S+ +N + + ILIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM Sbjct: 209 AGSNAQNPE-----DVSMAILIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 263 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 264 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297 >gi|311695203|gb|ADP98076.1| flagellar biosynthesis protein FliP [marine bacterium HP15] Length = 258 Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 88/206 (42%), Positives = 143/206 (69%), Gaps = 5/206 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + T L+ P +L+M+T F R I+VF+ILR +G+ S P N +++ LALF++ ++M Sbjct: 56 LQILALMTALTFLPAMLMMMTSFTRIIVVFAILRQAIGLQSTPSNQILLGLALFLSIFIM 115 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P L+ + + +QP M ++T A++ ++PF FM TRE DL+LFM ++ + + Sbjct: 116 KPVLEEANRVALQPYMQEEVTSLEAVELASQPFRKFMLEQTRESDLALFMRISDTQYE-- 173 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 T D + + IL+P+F+ SEL+ +F+IGF++ +PFLIIDM+VA+++MAMGMMML P I Sbjct: 174 --TPQD-VSFWILMPAFVTSELKTAFQIGFILFIPFLIIDMVVASVLMAMGMMMLSPIII 230 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW+L++ L S+ Sbjct: 231 SLPFKIMLFVLVDGWALIMGTLAASY 256 >gi|308273529|emb|CBX30131.1| Flagellar biosynthetic protein fliP [uncultured Desulfobacterium sp.] Length = 225 Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 96/217 (44%), Positives = 146/217 (67%), Gaps = 7/217 (3%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P +S+ +++ + T+LS+AP +LIM+T F R IVFS LR +G P N +I Sbjct: 16 PEQVSV---LIQILFLLTVLSLAPAILIMMTPFTRLAIVFSFLRQALGTQQTPSNQIIAG 72 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 L+LF+TF++M P +QP + +I++ TA++ P FM TREKDL++F+ Sbjct: 73 LSLFITFFIMMPQWQEINNNALQPYLEKKISQETALKEAMIPIRKFMFRQTREKDLAIFV 132 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 M+ S N+ + I LIP+F+ISEL+ +F IGF++ +PFLIIDM+VA+++++M Sbjct: 133 KMSKSEKPNSP----EDISMTTLIPAFVISELKTAFIIGFVLFVPFLIIDMVVASVLLSM 188 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 GMMMLPP ISLPFK++ FVL+DGW+L+V ++VKSF+ Sbjct: 189 GMMMLPPILISLPFKLMLFVLVDGWNLIVGSMVKSFV 225 >gi|34558376|ref|NP_908191.1| flagellar biosynthesis protein FliP [Wolinella succinogenes DSM 1740] gi|34484095|emb|CAE11091.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Wolinella succinogenes] Length = 247 Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 96/194 (49%), Positives = 137/194 (70%), Gaps = 4/194 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP L++++T F R IIVFS LRT MG PP +++SLA+ +TF++M P +S E+GI Sbjct: 57 APSLVLVMTSFTRLIIVFSFLRTAMGTQQSPPTQLLVSLAMVLTFFIMEPIAKQSYEIGI 116 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 +P + +I A + PF FM NTREKDL+LF + + T + I + Sbjct: 117 KPYLAKEIPYDVAFVKSVGPFKEFMIRNTREKDLALFYRIRGMENPQTI----EDIPLTM 172 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 +IP+FMISE++ +F+IGFLI LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ FVL+ Sbjct: 173 VIPAFMISEMKTAFQIGFLIYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFVLV 232 Query: 232 DGWSLLVENLVKSF 245 DG++LLV +LV+SF Sbjct: 233 DGFNLLVGSLVESF 246 >gi|163801855|ref|ZP_02195752.1| flagellar biosynthesis protein P [Vibrio sp. AND4] gi|159174363|gb|EDP59167.1| flagellar biosynthesis protein P [Vibrio sp. AND4] Length = 289 Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 95/214 (44%), Positives = 139/214 (64%), Gaps = 8/214 (3%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D S++ I+ + T+L P ++I++T F R ++V SILR MG+ P N VII +A Sbjct: 82 DYSVTLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 138 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 LF+TF+VMSP L+ + IQP +N Q+T A P FM TR KDL F+DM Sbjct: 139 LFLTFFVMSPVLNEINDNAIQPYLNEQLTARQAFDTAQVPMKAFMLKQTRIKDLETFVDM 198 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM Sbjct: 199 SGE-----QVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 253 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 254 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287 >gi|297584051|ref|YP_003699831.1| flagellar biosynthetic protein FliP [Bacillus selenitireducens MLS10] gi|297142508|gb|ADH99265.1| flagellar biosynthetic protein FliP [Bacillus selenitireducens MLS10] Length = 226 Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 92/194 (47%), Positives = 132/194 (68%), Gaps = 4/194 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +LI++T F R +IV S +R G+ +PPN VII LALF+TF+VM+PT E + Sbjct: 37 APAILILMTSFTRIVIVLSFVRNGLATQQMPPNQVIIGLALFLTFFVMAPTFSEVNEAAL 96 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 QPL + I++ A P FM +TRE+DL+LFM A + + I Sbjct: 97 QPLFDGDISQEEAFDEATIPMKEFMAQHTRERDLALFMGYAGQERPES----LEDIPLTS 152 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 L+P+F+ISEL+ +F+IGF+I +PFL+IDM+VA+++M+MGMMMLPP I+LPFKV+ FVL+ Sbjct: 153 LVPAFVISELKTAFQIGFMIFVPFLVIDMVVASVLMSMGMMMLPPVMIALPFKVLLFVLV 212 Query: 232 DGWSLLVENLVKSF 245 DGW L+V +L+ +F Sbjct: 213 DGWHLVVRSLLYTF 226 >gi|330828809|ref|YP_004391761.1| flagellar biosynthetic protein FliP [Aeromonas veronii B565] gi|328803945|gb|AEB49144.1| Flagellar biosynthetic protein FliP [Aeromonas veronii B565] Length = 257 Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 92/206 (44%), Positives = 138/206 (66%), Gaps = 5/206 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + T LS P ++IM+T F R I+V ILR +G+ P N V+I +ALFM+F++M Sbjct: 52 LQVLALMTALSFLPAMVIMMTSFTRIIVVLGILRQAIGLQQSPSNQVLIGIALFMSFFIM 111 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP LDR + +QP + I A++R P FM TR KDL+ FM++A N Sbjct: 112 SPVLDRINDEALQPYLAETIQAKEALERAELPIHQFMLAQTRIKDLNTFMEIA-----NV 166 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + K + R+LIP+F+ SEL+ +F+IGF++ LPFL+ID++VA+I+MAMGMMML P + Sbjct: 167 QVEKPADVPLRVLIPAFVTSELKTAFQIGFMLFLPFLVIDLVVASILMAMGMMMLSPMIV 226 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FV++DGW+L++ +L SF Sbjct: 227 SLPFKLMLFVMVDGWNLILGSLANSF 252 >gi|329901241|ref|ZP_08272766.1| Flagellar biosynthesis protein fliP [Oxalobacteraceae bacterium IMCC9480] gi|327549173|gb|EGF33765.1| Flagellar biosynthesis protein fliP [Oxalobacteraceae bacterium IMCC9480] Length = 251 Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 90/193 (46%), Positives = 131/193 (67%), Gaps = 4/193 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P L+M+T F R IIV S+LR +G S PPN V++ LALF+T +VM P D+ Sbjct: 62 PAALLMMTSFTRIIIVLSLLRQALGTQSAPPNQVMVGLALFLTLFVMGPVFDKIYADAYL 121 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 PL N+I T A++R A P FM TR+ DL+L++ M++S + D + RIL Sbjct: 122 PLQENKINMTQAMERGAAPLKAFMMKQTRQADLALYVKMSNSPA----LQGPDDVPLRIL 177 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 +P+F+ SEL+ +F+I F I +PFLIIDM+VA+++M+MGMMM+ P+ +SLPFK++ FVL+D Sbjct: 178 VPAFITSELKTAFQISFAIFIPFLIIDMVVASVLMSMGMMMVSPSIVSLPFKLMLFVLVD 237 Query: 233 GWSLLVENLVKSF 245 GW LL+ +L +SF Sbjct: 238 GWQLLIGSLAQSF 250 >gi|152997437|ref|YP_001342272.1| flagellar biosynthesis protein FliP [Marinomonas sp. MWYL1] gi|150838361|gb|ABR72337.1| flagellar biosynthetic protein FliP [Marinomonas sp. MWYL1] Length = 245 Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 102/247 (41%), Positives = 159/247 (64%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIP-ADLSIS-TWIVRTFGIFTILSIAPILLIM 58 MIR+ L LV P +A+ L V + AD S T ++ I T L++ P L+M Sbjct: 1 MIRFVSL-LLLVFPAFSWAEVGLPAVKVVTNADGSQDYTVSLQILFIMTALTLLPAALMM 59 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R I+V +ILR +G+ P N ++I +ALF+T ++M+PTLDR E+ +QP + + Sbjct: 60 MTAFTRIIVVLAILRQAIGLQQTPSNQIMIGMALFLTLFIMTPTLDRVNEVALQPYLKEE 119 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 +T A++ + P FM TRE D++LF+ +A + I + + + IL+P+F+ Sbjct: 120 MTSIQAVEAASVPVRDFMLAQTREDDIALFVKLAG---KEGTIQSMETLPFTILMPAFVT 176 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF+I +PFLI+DM+VA+++MAMGMMML P ISLPFK++ FV++DGWS+++ Sbjct: 177 SELKTAFQIGFMIFIPFLIVDMVVASVLMAMGMMMLSPIIISLPFKIMLFVMVDGWSMIM 236 Query: 239 ENLVKSF 245 L SF Sbjct: 237 GTLAASF 243 >gi|326319061|ref|YP_004236733.1| flagellar biosynthetic protein FliP [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375897|gb|ADX48166.1| flagellar biosynthetic protein FliP [Acidovorax avenae subsp. avenae ATCC 19860] Length = 259 Score = 186 bits (473), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 95/207 (45%), Positives = 135/207 (65%), Gaps = 4/207 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++T FT LS P LL+M+T F R +IV S++R +G S PPN VII L+LF+TF+VM Sbjct: 56 IQTLLFFTALSFLPALLLMMTGFTRIVIVLSLIRQAIGTQSAPPNQVIIGLSLFLTFFVM 115 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 PT DR P NN IT A++R P FM TR+ D +LF +A T Sbjct: 116 GPTFDRVYADAYLPYSNNTITFEQAVERAEAPMRSFMLKQTRQSDFALFARLAKLPSGAT 175 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 T R+L+P+F+ SEL+ +F+IGF+I +PFL+IDM+V++I+M++GMMML P + Sbjct: 176 AETA----PMRVLVPAFVTSELKSAFQIGFMIFIPFLVIDMVVSSILMSLGMMMLSPVLV 231 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246 +LPFK++ FVL DGW+LL+ +L SF+ Sbjct: 232 ALPFKLMLFVLADGWNLLLGSLAASFV 258 >gi|90021817|ref|YP_527644.1| flagellar biosynthesis protein FliP [Saccharophagus degradans 2-40] gi|89951417|gb|ABD81432.1| flagellar biosynthetic protein FliP [Saccharophagus degradans 2-40] Length = 280 Score = 186 bits (472), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 91/199 (45%), Positives = 135/199 (67%), Gaps = 4/199 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T L+ P +LIM+T F R IIVFSILR +G+ P N ++I L LF+TF++M+P +++ Sbjct: 84 TALTFLPAILIMMTAFTRIIIVFSILRQALGLQQSPSNQILIGLTLFLTFFIMTPVIEKV 143 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 + +QP + QIT A++ +P FM NTRE DL LF +A T + Sbjct: 144 NQNALQPYIAEQITAQQALEETKKPVRKFMLANTRESDLELFFRIASLEPVATP----EE 199 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 I + +L+PSF+ SEL+ +F+IGF++ +PFL+ID++VA+++MAMGMMML P ISLPFK++ Sbjct: 200 IPFSVLVPSFITSELKTAFQIGFILFIPFLVIDIVVASVLMAMGMMMLSPLIISLPFKIM 259 Query: 227 FFVLIDGWSLLVENLVKSF 245 FVL+DGW+L++ L SF Sbjct: 260 LFVLVDGWALIIGTLAASF 278 >gi|187935306|ref|YP_001885056.1| flagellar biosynthetic protein FliP [Clostridium botulinum B str. Eklund 17B] gi|187723459|gb|ACD24680.1| flagellar biosynthetic protein FliP [Clostridium botulinum B str. Eklund 17B] Length = 259 Score = 186 bits (472), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 90/200 (45%), Positives = 140/200 (70%), Gaps = 3/200 (1%) Query: 46 FTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDR 105 FTIL++ P ++IM+T F R +IVFS +++ MG+ PN ++ LALF+T ++MSP + Sbjct: 62 FTILAVLPSIVIMLTSFTRIVIVFSFIKSAMGVQQAIPNQILTGLALFLTIFIMSPVYNE 121 Query: 106 SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165 QP + IT+ AI+ ++P FM TREKDL LF+++ ++ N + + Sbjct: 122 VNTKAFQPYVEQSITQEEAIEIGSKPIKDFMLKQTREKDLELFVEI---NNVNKEELTRE 178 Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225 + + LIP+F ISEL+ +F++GFLI LPF++IDM+VA+++M+MGMMMLPP +SLPFK+ Sbjct: 179 SVPFTTLIPAFAISELKTAFQMGFLIYLPFIVIDMVVASVLMSMGMMMLPPAMVSLPFKL 238 Query: 226 IFFVLIDGWSLLVENLVKSF 245 + FV++DGW LLV++L+ SF Sbjct: 239 LLFVMVDGWYLLVKSLIMSF 258 >gi|146307834|ref|YP_001188299.1| flagellar biosynthesis protein FliP [Pseudomonas mendocina ymp] gi|145576035|gb|ABP85567.1| flagellar biosynthetic protein FliP [Pseudomonas mendocina ymp] Length = 261 Score = 186 bits (472), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 93/201 (46%), Positives = 135/201 (67%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 I T LS P ++++T F R IIVFSILR +G+ P N +++ LALF+T ++M+P D Sbjct: 62 IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILVGLALFLTLFIMAPIFD 121 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 R +QP +N +I A+ R P FM TRE DL+LF+ ++ + TD+ Sbjct: 122 RINTDALQPYLNEEIVAQEALTRAEGPIRDFMLAQTRESDLALFVRLS----KRTDLAGV 177 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + + IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA+I+MAMGMMML P ISLPFK Sbjct: 178 EDVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASILMAMGMMMLSPLIISLPFK 237 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW+L++ L SF Sbjct: 238 IMLFVLVDGWALIMGTLAASF 258 >gi|302670736|ref|YP_003830696.1| flagellar biosynthetic protein FliP [Butyrivibrio proteoclasticus B316] gi|302395209|gb|ADL34114.1| flagellar biosynthetic protein FliP [Butyrivibrio proteoclasticus B316] Length = 314 Score = 186 bits (472), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 93/199 (46%), Positives = 136/199 (68%), Gaps = 4/199 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T++S+AP LL+M+T F R I+ RT +G + PPNLV++ +ALFMT ++M PTL Sbjct: 119 TLISLAPTLLVMMTSFTRIIVALHFTRTAIGTQTSPPNLVMLGIALFMTLFIMQPTLTTV 178 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 + P N ++ + + +PF FM T++KD+ LFM++ + D Sbjct: 179 YNEAVIPFENGEMDQQEFFEEAMDPFRQFMYGQTQKKDVILFMNIDGIEWDG----ELDS 234 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 I +LIPSF++SELR +F IGF+I +PF++IDM+VA+++M+MGMMMLPPT+ISLPFK++ Sbjct: 235 IPNVVLIPSFIVSELRTAFIIGFMIYIPFIVIDMVVASVLMSMGMMMLPPTTISLPFKIL 294 Query: 227 FFVLIDGWSLLVENLVKSF 245 FVL DGWSL++ NLVKSF Sbjct: 295 LFVLADGWSLIIGNLVKSF 313 >gi|34498582|ref|NP_902797.1| flagellar biosynthesis protein FliP [Chromobacterium violaceum ATCC 12472] gi|34104436|gb|AAQ60794.1| probable flagellar biosynthetic protein fliP [Chromobacterium violaceum ATCC 12472] Length = 250 Score = 186 bits (472), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 88/199 (44%), Positives = 137/199 (68%), Gaps = 4/199 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T L+ P +++M+T F R +IV S+LR +G PPN VI+ LALF+T +VM PT D+ Sbjct: 53 TALTFIPAMMLMMTAFTRIVIVLSLLRQALGTTQSPPNQVIVGLALFLTLFVMGPTFDQV 112 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 P +++I+ A+ ++P FM TREKDL+ F++++ S + + Sbjct: 113 YAKAWVPFSDDKISFNQALDEGSKPMKAFMLRQTREKDLAFFIEISQSPKPQS----KEE 168 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 + + LIP+F +SEL+ +F+IGF+I +PF+IID++VA+I+MAMGMMM+ P +ISLPFK++ Sbjct: 169 VSMKTLIPAFAVSELKTAFQIGFMIFIPFMIIDLVVASILMAMGMMMVSPVTISLPFKMM 228 Query: 227 FFVLIDGWSLLVENLVKSF 245 FVL+DGW+LL+ +LV+SF Sbjct: 229 LFVLVDGWTLLMGSLVQSF 247 >gi|229591840|ref|YP_002873959.1| flagellar biosynthesis protein FliP [Pseudomonas fluorescens SBW25] gi|229363706|emb|CAY51090.1| flagellar biosynthesis [Pseudomonas fluorescens SBW25] Length = 247 Score = 186 bits (472), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 90/201 (44%), Positives = 133/201 (66%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 I T LS P ++++T F R IIVFSILR +G+ P N ++ +ALF+T ++M+P D Sbjct: 48 IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTLFIMAPVFD 107 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + + +QP + ++T AI + P FM + TR DL LFM ++ + TDI Sbjct: 108 KVNQQALQPYLAEKMTAQDAIDKAQGPIKDFMLSQTRSSDLELFMRLS----KRTDIATP 163 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D IL+P+F+ SEL+ +F+IGF+I +PFLIID++VA+++MAMGMMML P ISLPFK Sbjct: 164 DQAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK 223 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW+L++ L SF Sbjct: 224 IMLFVLVDGWALIIGTLASSF 244 >gi|27904581|ref|NP_777707.1| putative bifunctional flagellar biosynthesis protein FliO/FliP [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46395829|sp|Q89AZ2|FLIP_BUCBP RecName: Full=Flagellar biosynthetic protein fliP gi|27903978|gb|AAO26812.1| flagellar biosynthetic protein FliP [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 360 Score = 186 bits (472), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 97/243 (39%), Positives = 157/243 (64%), Gaps = 10/243 (4%) Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCF 62 C F LF + +A + + DV++ + W + +T T L+ P +L+M+T F Sbjct: 124 CVFLLFCPS----YAYAGIPDVISHTSSDGGQIWSIPIQTLVFITSLTFIPTVLLMMTSF 179 Query: 63 PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122 R +IVFS+LR+ +G PPN +++ L+L +TF++M+P D+ + P ++I+ Sbjct: 180 SRIVIVFSLLRSALGTPYSPPNQILVGLSLILTFFIMAPIFDKIYQDSYLPFSEDKISID 239 Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182 TAI R A+P FM N TR+ DL F +A+ S ++ + I R+L+PSF+ SEL+ Sbjct: 240 TAIVRGAKPLHKFMVNQTRQVDLEFFSKLANIS----TFSRKEEIPMRVLLPSFITSELK 295 Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242 +F+IGF I +PFLIID++V++++M++GMMM+PP++ISLPFK++ FVL+DGW LL+ +L Sbjct: 296 TAFQIGFTIFIPFLIIDLVVSSVLMSLGMMMVPPSTISLPFKLMLFVLVDGWQLLITSLT 355 Query: 243 KSF 245 SF Sbjct: 356 HSF 358 >gi|326204610|ref|ZP_08194466.1| flagellar biosynthetic protein FliP [Clostridium papyrosolvens DSM 2782] gi|325985177|gb|EGD46017.1| flagellar biosynthetic protein FliP [Clostridium papyrosolvens DSM 2782] Length = 243 Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 96/204 (47%), Positives = 135/204 (66%), Gaps = 5/204 (2%) Query: 46 FTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDR 105 T+LSIAP +LIM+T F R II+ S LR +G +PPN V+I LALF+T +VMSP L Sbjct: 39 LTVLSIAPSILIMMTGFTRIIIILSFLRNALGTQQMPPNQVLIGLALFITLFVMSPVLSD 98 Query: 106 SIEMGIQPLMNNQITETTAIQRVAEPF--WVFMR--NNTREKDLSLFMDMAHSSHRNTDI 161 E QP N +IT+ AI + ++ W+ + +N REKDL LFM + + Sbjct: 99 INENAFQPYTNGKITQQQAIDKSSQSIKTWMVKQIFSNKREKDLELFMTLG-GQKEPVKV 157 Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221 + ++ P+F+ISEL +F+ GFLI LPFLIIDM+V++ +M+MGMMMLPP ISL Sbjct: 158 QDASKLSLTMVAPAFLISELTVAFKFGFLIFLPFLIIDMVVSSALMSMGMMMLPPIMISL 217 Query: 222 PFKVIFFVLIDGWSLLVENLVKSF 245 PFK++ FVL+DGWS+L ++++ SF Sbjct: 218 PFKILLFVLVDGWSMLTQSIITSF 241 >gi|291286235|ref|YP_003503051.1| flagellar biosynthetic protein FliP [Denitrovibrio acetiphilus DSM 12809] gi|290883395|gb|ADD67095.1| flagellar biosynthetic protein FliP [Denitrovibrio acetiphilus DSM 12809] Length = 243 Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 95/218 (43%), Positives = 144/218 (66%), Gaps = 7/218 (3%) Query: 28 NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87 N P D++++ I+ + T +SIAP L+++T F R +IVFS+LRT MG +PPN V+ Sbjct: 32 NSPQDVAVTIQIML---LMTFISIAPGFLVLMTSFTRIVIVFSLLRTAMGTSQMPPNQVL 88 Query: 88 ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147 +SLAL +TFY+M+P G+ P IT + V +P FM NTR++D+ Sbjct: 89 LSLALILTFYIMNPVFTEMYNKGLGPYFEETITFQEMVSEVKKPLRKFMLYNTRKQDVRT 148 Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 F+ ++ + T D I +L+ SF++SEL +F++GFL+ LPFLIID +VA++++ Sbjct: 149 FLSISGEARPKT----ADDIPDLVLLSSFVVSELTTAFQMGFLLFLPFLIIDFVVASVLL 204 Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MGMMMLPP IS+PFK++ FVL+DGW L+V ++VKSF Sbjct: 205 SMGMMMLPPVMISVPFKIMLFVLVDGWGLIVTSIVKSF 242 >gi|238794007|ref|ZP_04637625.1| Flagellar biosynthetic protein fliP [Yersinia intermedia ATCC 29909] gi|238726639|gb|EEQ18175.1| Flagellar biosynthetic protein fliP [Yersinia intermedia ATCC 29909] Length = 273 Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 98/231 (42%), Positives = 149/231 (64%), Gaps = 8/231 (3%) Query: 17 VFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74 VFA+ L +++ P +W V+T T LS P L+M+T F R IIV +LR Sbjct: 47 VFAQ--LPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLLRN 104 Query: 75 GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134 +G S PPN V++ LALF+TF++MSP D+ + P ++I+ AI + A+P Sbjct: 105 ALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAIDKGAQPLRE 164 Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194 FM TRE DL+L+ +A+ + + + RIL+P+++ SEL+ +F+IGF + +P Sbjct: 165 FMLRQTRESDLALYARLANLP----PLEGPEVVPMRILLPAYVTSELKTAFQIGFTVFIP 220 Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 FLIID++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 221 FLIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 271 >gi|218288310|ref|ZP_03492609.1| flagellar biosynthetic protein FliP [Alicyclobacillus acidocaldarius LAA1] gi|218241669|gb|EED08842.1| flagellar biosynthetic protein FliP [Alicyclobacillus acidocaldarius LAA1] Length = 272 Score = 186 bits (471), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 85/188 (45%), Positives = 129/188 (68%) Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 ++TCF R I+V S +R + + + PPN V++ LALF+T +VM PTL ++ +QP + Sbjct: 83 LMTCFTRVIVVLSFVRNALSLQTSPPNQVLVGLALFITLFVMQPTLQQANTQALQPYLRG 142 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177 QI++T AI+R PF VFM TR +DL LF+ H + + I L+P+F Sbjct: 143 QISQTAAIERAEAPFKVFMAKQTRAQDLELFLAYRHETLTAEMERHPEAIAMSALVPAFT 202 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 +SEL+ +F+IGF+I LPFL+ID++V+T +M+MGMMMLPP ISLPFKV+ FV+++GW L+ Sbjct: 203 LSELQTAFQIGFMIYLPFLVIDLVVSTTLMSMGMMMLPPVMISLPFKVLLFVMVNGWYLV 262 Query: 238 VENLVKSF 245 V++L+ + Sbjct: 263 VKSLLAGY 270 >gi|28899013|ref|NP_798618.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus RIMD 2210633] gi|260365241|ref|ZP_05777798.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus K5030] gi|260878791|ref|ZP_05891146.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus AN-5034] gi|260897386|ref|ZP_05905882.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus Peru-466] gi|28807232|dbj|BAC60502.1| polar flagellar assembly protein FliP [Vibrio parahaemolyticus RIMD 2210633] gi|308088270|gb|EFO37965.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus Peru-466] gi|308094309|gb|EFO44004.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus AN-5034] gi|308115428|gb|EFO52968.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus K5030] Length = 289 Score = 186 bits (471), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 94/214 (43%), Positives = 139/214 (64%), Gaps = 8/214 (3%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D S++ I+ + T+L P ++I++T F R ++V SILR MG+ P N VII +A Sbjct: 82 DYSVTLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 138 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 LF+TF+VMSP L+ + IQP +N Q+T A P FM TR KDL F++M Sbjct: 139 LFLTFFVMSPVLNEINDTAIQPYLNEQVTAREAFDAAQVPMKAFMLKQTRIKDLETFVNM 198 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM Sbjct: 199 SGE-----QVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 253 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 254 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287 >gi|312962263|ref|ZP_07776755.1| flagellar biosynthetic protein FliP [Pseudomonas fluorescens WH6] gi|311283600|gb|EFQ62189.1| flagellar biosynthetic protein FliP [Pseudomonas fluorescens WH6] Length = 247 Score = 186 bits (471), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 90/201 (44%), Positives = 133/201 (66%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 I T LS P ++++T F R IIVFSILR +G+ P N ++ +ALF+T ++M+P D Sbjct: 48 IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFD 107 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + + +QP + ++T AI + P FM + TR DL LFM ++ + TDI Sbjct: 108 KVNQQALQPYLAEKMTAQDAIDKAQGPIKDFMLSQTRSSDLELFMRLS----KRTDIASP 163 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D IL+P+F+ SEL+ +F+IGF+I +PFLIID++VA+++MAMGMMML P ISLPFK Sbjct: 164 DQAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK 223 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW+L++ L SF Sbjct: 224 IMLFVLVDGWALIIGTLASSF 244 >gi|304311110|ref|YP_003810708.1| Flagellar transport protein FliP [gamma proteobacterium HdN1] gi|301796843|emb|CBL45055.1| Flagellar transport protein FliP [gamma proteobacterium HdN1] Length = 253 Score = 186 bits (471), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 91/212 (42%), Positives = 139/212 (65%), Gaps = 5/212 (2%) Query: 36 STWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 +W V + G T+L++ P +++M+T F R IIVFSILR +G+ P N +++ LALF Sbjct: 43 ESWSVSLQVLGFMTVLTLLPAIVLMMTAFTRIIIVFSILRQAIGLQQAPSNQILVGLALF 102 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 +T +VM P D + ++P +I AIQ + P FM RE DL+LF+++A Sbjct: 103 LTLFVMRPVFDEINRVAVEPYQAEKIDGMQAIQAASGPLRKFMMAQIREADLTLFIELAG 162 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 R ++ D + I+IP+F+ SEL+ +F+IGFL+ +PFLIIDM+VA+++MAMGMMM Sbjct: 163 EQDRYHEV---DEVPLTIIIPAFITSELKTAFQIGFLLFIPFLIIDMVVASVLMAMGMMM 219 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 L P ISLPFK++ FV +DGW+++V +L S+ Sbjct: 220 LSPMIISLPFKIMLFVFVDGWAMVVGSLAASY 251 >gi|330502776|ref|YP_004379645.1| flagellar biosynthesis protein FliP [Pseudomonas mendocina NK-01] gi|328917062|gb|AEB57893.1| flagellar biosynthesis protein FliP [Pseudomonas mendocina NK-01] Length = 261 Score = 186 bits (471), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 93/201 (46%), Positives = 135/201 (67%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 I T LS P ++++T F R IIVFSILR +G+ P N +++ LALF+T ++M+P D Sbjct: 62 IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILVGLALFLTMFIMAPVFD 121 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 R +QP +N +I A+ R P FM TRE DL+LF+ ++ + TD+ Sbjct: 122 RINTDALQPYLNEEIIAQEALTRAEGPIRDFMLAQTRESDLALFVRLS----KRTDLAGV 177 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + + IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA+I+MAMGMMML P ISLPFK Sbjct: 178 EDVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASILMAMGMMMLSPLIISLPFK 237 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW+L++ L SF Sbjct: 238 IMLFVLVDGWALIMGTLAASF 258 >gi|269103167|ref|ZP_06155864.1| flagellar biosynthesis protein FliP [Photobacterium damselae subsp. damselae CIP 102761] gi|268163065|gb|EEZ41561.1| flagellar biosynthesis protein FliP [Photobacterium damselae subsp. damselae CIP 102761] Length = 272 Score = 186 bits (471), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 92/214 (42%), Positives = 141/214 (65%), Gaps = 8/214 (3%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D S++ I+ + T L P ++I++T F R ++V SILR +G+ P N VII +A Sbjct: 65 DYSVTLQIL---ALMTALGFLPAIVILMTSFTRIVVVMSILRQALGLQQTPSNQVIIGIA 121 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 LF+TF+VMSP LDR +QP +N QIT A+++ P FM TR KDL F+++ Sbjct: 122 LFLTFFVMSPVLDRINAQAVQPYINEQITAPQALEKAKVPMREFMLKQTRVKDLETFVNI 181 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + + ++ + +LIP+F+ SEL+ +F+IGF++ LPFL+ID++VA+++MAMGM Sbjct: 182 SGA-----KVSDPQQVPMTVLIPAFITSELKTAFQIGFMLFLPFLVIDLVVASVLMAMGM 236 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 237 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 270 >gi|120613021|ref|YP_972699.1| flagellar biosynthesis protein FliP [Acidovorax citrulli AAC00-1] gi|120591485|gb|ABM34925.1| flagellar biosynthetic protein FliP [Acidovorax citrulli AAC00-1] Length = 262 Score = 186 bits (471), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 94/207 (45%), Positives = 135/207 (65%), Gaps = 4/207 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++T FT LS P +L+M+T F R +IV S++R +G S PPN VII L+LF+TF+VM Sbjct: 59 IQTLLFFTALSFLPAVLLMMTGFTRIVIVLSLIRQAIGTQSAPPNQVIIGLSLFLTFFVM 118 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 PT DR P NN IT A++R P FM TR+ D +LF +A T Sbjct: 119 GPTFDRVYADAYLPYSNNTITFEQAVERAEAPMRSFMLKQTRQSDFALFARLAKLPSGAT 178 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 T R+L+P+F+ SEL+ +F+IGF+I +PFL+IDM+V++I+M++GMMML P + Sbjct: 179 AETA----PMRVLVPAFVTSELKSAFQIGFMIFIPFLVIDMVVSSILMSLGMMMLSPVLV 234 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246 +LPFK++ FVL DGW+LL+ +L SF+ Sbjct: 235 ALPFKLMLFVLADGWNLLLGSLAASFV 261 >gi|54308125|ref|YP_129145.1| flagellar biosynthesis protein FliP [Photobacterium profundum SS9] gi|46912551|emb|CAG19343.1| Putative polar flagellar assembly protein, FliP [Photobacterium profundum SS9] Length = 284 Score = 186 bits (471), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 94/214 (43%), Positives = 140/214 (65%), Gaps = 8/214 (3%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D S++ I+ G+ T L P ++I++T F R ++V SILR MG+ P N VII +A Sbjct: 77 DYSVTLQIL---GLMTALGFLPAIIILMTSFTRIVVVLSILRQAMGLQQTPSNQVIIGIA 133 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 LF+T +VMSP +D+ +QP +N +IT A + P FM TR KDL F++M Sbjct: 134 LFLTLFVMSPVIDKVNADAVQPYINEEITAAQAFETAQVPLRQFMLKQTRVKDLESFVNM 193 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + S+ T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM Sbjct: 194 SGSTA-----TAPEDVPITVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 248 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 249 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 282 >gi|222112240|ref|YP_002554504.1| flagellar biosynthesis protein flip [Acidovorax ebreus TPSY] gi|221731684|gb|ACM34504.1| flagellar biosynthetic protein FliP [Acidovorax ebreus TPSY] Length = 251 Score = 186 bits (471), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 95/206 (46%), Positives = 134/206 (65%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++T FT LS P +L+M+T F R +IV S+LR +G S PPN VII L+LF+T +VM Sbjct: 48 IQTLLFFTALSFLPAVLLMMTGFTRIVIVLSLLRQAIGTQSAPPNQVIIGLSLFLTLFVM 107 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 PTLD+ + P N IT AIQR P FM TR+ D +LF +A T Sbjct: 108 GPTLDKVYQEAYVPYTTNAITFEQAIQRAEAPMRGFMLKQTRQSDFALFARLAKLDEGVT 167 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 T R+L+P+F+ SEL+ +F+IGF+I +PFLIIDM+V++++M++GMMML P + Sbjct: 168 AETA----PLRVLVPAFVTSELKSAFQIGFMIFIPFLIIDMVVSSVLMSLGMMMLSPVLV 223 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 +LPFK++ FVL DGW+LL+ +L SF Sbjct: 224 ALPFKLMLFVLADGWNLLIGSLAASF 249 >gi|328474450|gb|EGF45255.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus 10329] Length = 289 Score = 186 bits (471), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 94/214 (43%), Positives = 139/214 (64%), Gaps = 8/214 (3%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D S++ I+ + T+L P ++I++T F R ++V SILR MG+ P N VII +A Sbjct: 82 DYSVTLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 138 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 LF+TF+VMSP L+ + IQP +N Q+T A P FM TR KDL F++M Sbjct: 139 LFLTFFVMSPVLNEINDTAIQPYLNEQVTAREAFDAAQVPMKAFMLKQTRIKDLETFVNM 198 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM Sbjct: 199 SGE-----QVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 253 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 254 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287 >gi|327481256|gb|AEA84566.1| flagellar biosynthesis protein FliP [Pseudomonas stutzeri DSM 4166] Length = 258 Score = 185 bits (470), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 94/201 (46%), Positives = 131/201 (65%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 I T LS P ++++T F R IIVFSILR +G+ P N ++I L LF+T ++M+P D Sbjct: 59 IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILIGLTLFLTLFIMAPVFD 118 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 R + +QP ++ QI AI R P FM TRE DL LF+ ++ TDI Sbjct: 119 RINQDALQPYLSEQIPAQEAIARAEVPLKNFMLAQTRESDLELFVRLSQ----RTDIASP 174 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA+++MAMGMMML P ISLPFK Sbjct: 175 EAAPMTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFK 234 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW L++ L SF Sbjct: 235 IMLFVLVDGWGLIIGTLAGSF 255 >gi|156975420|ref|YP_001446327.1| flagellar biosynthesis protein FliP [Vibrio harveyi ATCC BAA-1116] gi|156527014|gb|ABU72100.1| hypothetical protein VIBHAR_03151 [Vibrio harveyi ATCC BAA-1116] Length = 289 Score = 185 bits (470), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 94/214 (43%), Positives = 139/214 (64%), Gaps = 8/214 (3%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D S++ I+ + T+L P ++I++T F R ++V SILR MG+ P N VII +A Sbjct: 82 DYSVTLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 138 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 LF+TF+VMSP L+ + IQP +N Q+T A P FM TR KDL F++M Sbjct: 139 LFLTFFVMSPVLNEINDNAIQPYLNEQVTARQAFDAAQVPMKAFMLKQTRIKDLETFVNM 198 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM Sbjct: 199 SGE-----QVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 253 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 254 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287 >gi|257484903|ref|ZP_05638944.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289629020|ref|ZP_06461974.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651610|ref|ZP_06482953.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. aesculi str. 2250] gi|298487821|ref|ZP_07005861.1| Flagellar biosynthesis protein fliP [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157546|gb|EFH98626.1| Flagellar biosynthesis protein fliP [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330866458|gb|EGH01167.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330986502|gb|EGH84605.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011077|gb|EGH91133.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 250 Score = 185 bits (470), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 104/248 (41%), Positives = 153/248 (61%), Gaps = 23/248 (9%) Query: 9 LFLVTPELVFAKSSLHDVMNIPA-----------DLSISTWIVRTFGIFTILSIAPILLI 57 L +VTP ++ A D ++IPA + S+S I+ I T LS P ++ Sbjct: 12 LVMVTPAVLAA-----DPLSIPAITLSNGADGQQEYSVSLQILL---IMTALSFIPAFVM 63 Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 ++T F R IIVFSILR +G+ P N ++ +ALF+T ++M+P DR + +QP + Sbjct: 64 LMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAE 123 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177 ++T A+ + P FM TR DL LFM ++ + TDI D IL+P+F+ Sbjct: 124 KLTAQDAVAKAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTPDAAPLTILVPAFV 179 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 ISEL+ +F+IGF+I +PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW+L+ Sbjct: 180 ISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALI 239 Query: 238 VENLVKSF 245 V L SF Sbjct: 240 VGTLAGSF 247 >gi|262276385|ref|ZP_06054194.1| flagellar biosynthesis protein FliP [Grimontia hollisae CIP 101886] gi|262220193|gb|EEY71509.1| flagellar biosynthesis protein FliP [Grimontia hollisae CIP 101886] Length = 277 Score = 185 bits (470), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 92/214 (42%), Positives = 140/214 (65%), Gaps = 8/214 (3%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D S++ I + T L P ++I++T F R ++V +ILR MG+ P N VII +A Sbjct: 71 DYSVTLQI---LALMTALGFLPAIVILMTSFTRIVVVMAILRQAMGLQQTPSNQVIIGIA 127 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 +F+T ++MSP +DR +QP +N +IT A RV P FM TR KDL F++M Sbjct: 128 MFLTLFIMSPVIDRMNVAAVQPYLNEEITAREAFDRVQVPLREFMLQQTRVKDLETFVNM 187 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + + +T+ + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM Sbjct: 188 SGA-----QVTEAEQVPMTVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 242 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 243 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 276 >gi|260899945|ref|ZP_05908340.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus AQ4037] gi|308107285|gb|EFO44825.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus AQ4037] Length = 289 Score = 185 bits (470), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 94/214 (43%), Positives = 139/214 (64%), Gaps = 8/214 (3%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D S++ I+ + T+L P ++I++T F R ++V SILR MG+ P N VII +A Sbjct: 82 DYSVTLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 138 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 LF+TF+VMSP L+ + IQP +N Q+T A P FM TR KDL F++M Sbjct: 139 LFLTFFVMSPVLNEINDTAIQPYLNEQVTAREAFDAAQVPMKAFMLKQTRIKDLETFVNM 198 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM Sbjct: 199 SGE-----QVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 253 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 254 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287 >gi|153834137|ref|ZP_01986804.1| flagellar biosynthesis protein [Vibrio harveyi HY01] gi|148869507|gb|EDL68505.1| flagellar biosynthesis protein [Vibrio harveyi HY01] Length = 280 Score = 185 bits (470), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 94/214 (43%), Positives = 139/214 (64%), Gaps = 8/214 (3%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D S++ I+ + T+L P ++I++T F R ++V SILR MG+ P N VII +A Sbjct: 73 DYSVTLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 129 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 LF+TF+VMSP L+ + IQP +N Q+T A P FM TR KDL F++M Sbjct: 130 LFLTFFVMSPVLNEINDNAIQPYLNEQVTARQAFDAAQVPMKAFMLKQTRIKDLETFVNM 189 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM Sbjct: 190 SGE-----QVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 244 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 245 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 278 >gi|153953789|ref|YP_001394554.1| flagellar biosynthesis protein FliP [Clostridium kluyveri DSM 555] gi|219854405|ref|YP_002471527.1| hypothetical protein CKR_1062 [Clostridium kluyveri NBRC 12016] gi|146346670|gb|EDK33206.1| FliP [Clostridium kluyveri DSM 555] gi|219568129|dbj|BAH06113.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 258 Score = 185 bits (470), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 90/193 (46%), Positives = 136/193 (70%), Gaps = 4/193 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +++M+T F R ++VF LRT MG PPN V++ LALF+T ++M P + IQ Sbjct: 69 PSIIMMMTSFVRIVVVFGFLRTAMGTQQSPPNQVLVGLALFLTVFIMLPVYGKINSEAIQ 128 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P + N IT+ A++R A+P FM TR+KDL LF+D A N ++TK++ Y ++ Sbjct: 129 PYLQNGITQEQAVERGAKPLREFMLKQTRQKDLKLFVDEAK---LNYEVTKDNAPLY-VV 184 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 IP+++ISEL+ +F+IGFL+ +PF+IID++V +++M+MGM MLPP ISLPFK++ FV+ D Sbjct: 185 IPAYIISELKTAFQIGFLLYIPFMIIDLVVGSVLMSMGMFMLPPVMISLPFKLLLFVMTD 244 Query: 233 GWSLLVENLVKSF 245 GW LLV++L+ SF Sbjct: 245 GWYLLVKSLIISF 257 >gi|4322007|gb|AAD15910.1| polar flagellar assembly protein FliP [Vibrio parahaemolyticus] Length = 289 Score = 185 bits (470), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 94/214 (43%), Positives = 139/214 (64%), Gaps = 8/214 (3%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D S++ I+ + T+L P ++I++T F R ++V SILR MG+ P N VII +A Sbjct: 82 DYSVTLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 138 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 LF+TF+VMSP L+ + IQP +N Q+T A P FM TR KDL F++M Sbjct: 139 LFLTFFVMSPVLNEINDTAIQPYLNEQVTAREAFDAAQVPMKAFMLKQTRIKDLETFVNM 198 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM Sbjct: 199 SGE-----QVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 253 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 254 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287 >gi|218778860|ref|YP_002430178.1| flagellar biosynthetic protein FliP [Desulfatibacillum alkenivorans AK-01] gi|218760244|gb|ACL02710.1| Flagellar biosynthetic protein FliP [Desulfatibacillum alkenivorans AK-01] Length = 256 Score = 185 bits (470), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 94/216 (43%), Positives = 146/216 (67%), Gaps = 7/216 (3%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P +S+ +++ + T+L++AP +L+++T F R +VFS LR +G +PPN V++ Sbjct: 45 PEQVSV---LLQIVALLTVLTLAPAILMLMTSFTRLAVVFSFLRHALGTQQMPPNQVMVG 101 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 LALF+T ++M P +QP +N +I + AI++ P FM +TREKDL+LF+ Sbjct: 102 LALFLTVFIMMPVWKDINTNALQPYLNEEIGDQEAIEKAVTPLREFMFRHTREKDLALFV 161 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 ++ + N+ + LIP+F+ISEL +F IGF+I +PFLIIDM+VA+++++M Sbjct: 162 KISGEAKPNSP----KDVTIWTLIPAFVISELTTAFMIGFIIYVPFLIIDMVVASVLLSM 217 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMMLPP ISLPFK++ FVL+DGWSL+V +LV+SF Sbjct: 218 GMMMLPPVMISLPFKLMLFVLVDGWSLIVGSLVQSF 253 >gi|289829471|ref|ZP_06547083.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 186 Score = 185 bits (470), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 87/188 (46%), Positives = 131/188 (69%), Gaps = 4/188 (2%) Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 M+T F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP Sbjct: 1 MMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQ 60 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177 +I+ A+ + A+P FM TRE DL+LF +A+S + + + RIL+P+++ Sbjct: 61 KISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGP----LQGPEAVPMRILLPAYV 116 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LL Sbjct: 117 TSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLL 176 Query: 238 VENLVKSF 245 V +L +SF Sbjct: 177 VGSLAQSF 184 >gi|169831899|ref|YP_001717881.1| flagellar biosynthetic protein FliP [Candidatus Desulforudis audaxviator MP104C] gi|169638743|gb|ACA60249.1| flagellar biosynthetic protein FliP [Candidatus Desulforudis audaxviator MP104C] Length = 260 Score = 185 bits (470), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 93/206 (45%), Positives = 138/206 (66%), Gaps = 5/206 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 VR T++S+ P L+MVT F R ++V + LR G+G+ PP V+I LALF+T ++M Sbjct: 59 VRLLLFLTVISLLPAFLVMVTSFTRIVVVLAFLRAGLGIYQAPPGSVLIGLALFLTVFIM 118 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +P + E I+P + +I + A +R A P FM +TREKDL LF+ MA + Sbjct: 119 APVYAQVNEQAIEPFLRGEIDQVEAQERAAGPLREFMLRHTREKDLDLFVRMAEIEN--- 175 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + ++IP+F+ISEL+ +F +GF++ LPFLIIDM+VA+I+++MGM MLPP I Sbjct: 176 --PVPNELPLTVVIPAFIISELKTAFTMGFMLYLPFLIIDMVVASILLSMGMFMLPPVMI 233 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW L+V +LV+SF Sbjct: 234 SLPFKLLLFVLVDGWYLVVRSLVESF 259 >gi|254478865|ref|ZP_05092229.1| flagellar biosynthetic protein FliP [Carboxydibrachium pacificum DSM 12653] gi|214035178|gb|EEB75888.1| flagellar biosynthetic protein FliP [Carboxydibrachium pacificum DSM 12653] Length = 221 Score = 185 bits (470), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 102/228 (44%), Positives = 153/228 (67%), Gaps = 14/228 (6%) Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80 S+L + P++LS S IV T+L++AP +LIM+T F R +IV + LR +G+ Sbjct: 4 SNLVSSVTSPSNLSTSLQIVLLL---TVLTLAPSILIMMTSFTRIVIVLAFLRNALGLQQ 60 Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140 +PPN V+I LALF+TFY+M+P I+P + QI + A +R +P FM T Sbjct: 61 MPPNQVLIGLALFLTFYIMAPVGYDINNNAIKPYVEGQINQYEAYERAIKPLKSFMLRQT 120 Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIE---YRILIPSFMISELRRSFEIGFLIILPFLI 197 R+ DL+LF+++A K D +E R++IP+F+ISEL+ +FEIGF+I +PFL+ Sbjct: 121 RQNDLALFVNLAK--------IKADKVEDLPMRVVIPAFIISELKTAFEIGFIIYIPFLV 172 Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ID+IVA+++M+MGM MLPP ISLPFKV+ F+L+DGW+L+V++L+ F Sbjct: 173 IDIIVASVLMSMGMFMLPPVLISLPFKVLLFILVDGWNLVVKSLILGF 220 >gi|161484783|ref|NP_669792.2| flagellar biosynthesis protein FliP [Yersinia pestis KIM 10] gi|161511402|ref|NP_992929.2| flagellar biosynthesis protein FliP [Yersinia pestis biovar Microtus str. 91001] gi|161760581|ref|YP_070220.2| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis IP 32953] gi|162100177|ref|YP_651108.2| flagellar biosynthesis protein FliP [Yersinia pestis Antiqua] gi|162139435|ref|YP_648231.2| flagellar biosynthesis protein FliP [Yersinia pestis Nepal516] gi|167401077|ref|ZP_02306580.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua str. UG05-0454] gi|115347552|emb|CAL20461.1| flagellar biosynthetic protein FliP [Yersinia pestis CO92] gi|167049466|gb|EDR60874.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua str. UG05-0454] Length = 246 Score = 185 bits (470), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 94/227 (41%), Positives = 146/227 (64%), Gaps = 6/227 (2%) Query: 21 SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 + L +++ P +W V+T T LS P L+M+T F R IIV +LR MG Sbjct: 22 AQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLLRNAMGT 81 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 S PPN V++ LALF+TF++MSP D+ + P ++I+ A+ + ++P FM Sbjct: 82 PSAPPNQVMLGLALFLTFFIMSPVFDKVYQEAYLPFSQDKISMDVALDKGSQPLREFMLR 141 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 TRE DL+L+ +A+ + + + RIL+P+++ SEL+ +F+IGF + +PFLII Sbjct: 142 QTRESDLALYARLANLP----PLEGPEMVPMRILLPAYVTSELKTAFQIGFTVFIPFLII 197 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 D++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 198 DLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 244 >gi|74055044|gb|AAZ95849.1| FliP [Aeromonas hydrophila] Length = 259 Score = 185 bits (470), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 92/206 (44%), Positives = 137/206 (66%), Gaps = 5/206 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + T LS P ++IM+T F R IIV ILR +G+ P N V+I +ALFM+F++M Sbjct: 53 LQVLALMTALSFLPAMVIMMTSFTRIIIVLGILRQAIGLQQSPSNQVLIGIALFMSFFIM 112 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP LDR +QP + I A+++ P FM TR KDL+ FM++A N Sbjct: 113 SPVLDRINNEALQPYLAETIQAKEALEKAELPIHQFMLAQTRIKDLNTFMEIA-----NV 167 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + K + R+LIP+F+ SEL+ +F+IGF++ LPFL+ID++VA+I+MAMGMMML P + Sbjct: 168 QVDKPAEVPLRVLIPAFVTSELKTAFQIGFMLFLPFLVIDLVVASILMAMGMMMLSPMLV 227 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FV++DGW+L++ +L SF Sbjct: 228 SLPFKLMLFVMVDGWNLILGSLANSF 253 >gi|27365290|ref|NP_760818.1| flagellar biosynthesis protein FliP [Vibrio vulnificus CMCP6] gi|37680655|ref|NP_935264.1| flagellar biosynthesis protein FliP [Vibrio vulnificus YJ016] gi|320155674|ref|YP_004188053.1| flagellar biosynthesis protein FliP [Vibrio vulnificus MO6-24/O] gi|27361437|gb|AAO10345.1| flagellar biosynthetic protein FliP [Vibrio vulnificus CMCP6] gi|37199404|dbj|BAC95235.1| flagellar biosynthesis pathway, component FliP [Vibrio vulnificus YJ016] gi|319930986|gb|ADV85850.1| flagellar biosynthesis protein FliP [Vibrio vulnificus MO6-24/O] Length = 289 Score = 185 bits (469), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 89/206 (43%), Positives = 134/206 (65%), Gaps = 5/206 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + T+L P ++I++T F R ++V SILR MG+ P N VII +ALF+TF++M Sbjct: 87 LQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFIM 146 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP ++ E +QP +N Q+T A P FM TR KDL F++M+ N Sbjct: 147 SPVINEVNEQAVQPYLNEQLTAREAFDAAQGPMKAFMLKQTRVKDLETFVNMSGEQATNP 206 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGMMML P + Sbjct: 207 E-----DVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGMMMLSPMIV 261 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW+L++ L SF Sbjct: 262 SLPFKLMLFVLVDGWNLILSTLAGSF 287 >gi|258511388|ref|YP_003184822.1| flagellar biosynthetic protein FliP [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478114|gb|ACV58433.1| flagellar biosynthetic protein FliP [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 272 Score = 185 bits (469), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 85/188 (45%), Positives = 129/188 (68%) Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 ++TCF R I+V S +R + + + PPN V++ LALF+T +VM PTL ++ +QP + Sbjct: 83 LMTCFTRVIVVLSFVRNALSLQTSPPNQVLVGLALFITLFVMQPTLQQANTQALQPYLRG 142 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177 QI++T AI+R PF VFM TR +DL LF+ H + + I L+P+F Sbjct: 143 QISQTAAIERAEAPFKVFMAKQTRAQDLELFLAYRHETLTAEMERHPEAIAMSALVPAFT 202 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 +SEL+ +F+IGF+I LPFL+ID++V+T +M+MGMMMLPP ISLPFKV+ FV+++GW L+ Sbjct: 203 LSELQTAFQIGFMIYLPFLVIDLVVSTTLMSMGMMMLPPVMISLPFKVLLFVMVNGWYLV 262 Query: 238 VENLVKSF 245 V++L+ + Sbjct: 263 VKSLLVGY 270 >gi|150390469|ref|YP_001320518.1| flagellar biosynthetic protein FliP [Alkaliphilus metalliredigens QYMF] gi|149950331|gb|ABR48859.1| flagellar biosynthetic protein FliP [Alkaliphilus metalliredigens QYMF] Length = 267 Score = 185 bits (469), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 92/201 (45%), Positives = 137/201 (68%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + TILSIAP +LIM+T F R +IV S LR + PP +II LALF+TF+ M+P Sbjct: 70 LLTILSIAPAILIMMTSFTRIVIVLSFLRNAIATQQTPPTQIIIGLALFLTFFTMAPIAT 129 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 +QP + ++ + A++R EP FM TREKDL+LF+++++S T+ Sbjct: 130 DINTNALQPYLAEELGQEEALERAMEPIREFMFRQTREKDLALFIEVSNSEMP----TEV 185 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 I LIP+F+ISEL+ +F++GF++ +PF++IDM+VA+ +MAMGMMMLPP ISLPFK Sbjct: 186 ADIATSTLIPAFIISELKTAFQMGFILFIPFIVIDMVVASTLMAMGMMMLPPAMISLPFK 245 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ F+++DGW++LV L+ SF Sbjct: 246 LLLFIMVDGWNILVRALIMSF 266 >gi|311992339|gb|ADQ26743.1| flagellar export component [Aeromonas hydrophila] Length = 258 Score = 185 bits (469), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 92/206 (44%), Positives = 137/206 (66%), Gaps = 5/206 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + T LS P ++IM+T F R IIV ILR +G+ P N V+I +ALFM+F++M Sbjct: 52 LQVLALMTALSFLPAMVIMMTSFTRIIIVLGILRQAIGLQQSPSNQVLIGIALFMSFFIM 111 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP LDR +QP + I A+++ P FM TR KDL+ FM++A N Sbjct: 112 SPVLDRINNEALQPYLAETIQAKEALEKAELPIHQFMLAQTRIKDLNTFMEIA-----NV 166 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + K + R+LIP+F+ SEL+ +F+IGF++ LPFL+ID++VA+I+MAMGMMML P + Sbjct: 167 QVDKPADVPLRVLIPAFVTSELKTAFQIGFMLFLPFLVIDLVVASILMAMGMMMLSPMLV 226 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FV++DGW+L++ +L SF Sbjct: 227 SLPFKLMLFVMVDGWNLILGSLANSF 252 >gi|291558213|emb|CBL35330.1| flagellar biosynthetic protein FliP [Eubacterium siraeum V10Sc8a] Length = 296 Score = 185 bits (469), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 91/208 (43%), Positives = 130/208 (62%), Gaps = 9/208 (4%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T+LS+AP LL+M+T F R II FS LRT M S PPN+V+ L+LF+T ++M P Sbjct: 87 TVLSLAPSLLVMMTSFARIIICFSFLRTAMQTQSTPPNMVLTGLSLFLTIFIMWPVFSEI 146 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 E QP ++T AI +P FM T D+ F+D+ S + D+ Sbjct: 147 NETAYQPYAAGEMTMEQAIDAAGKPLKTFMLKQTTNDDMKFFLDLKGQSMSDVTGGATDN 206 Query: 167 IE---------YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 I + +IP+F++SEL+R+F++GFLI +PFL+ID++V++ +MAMGMMMLPP Sbjct: 207 ITLENYSEKLGFETVIPAFIVSELKRAFQMGFLIFIPFLVIDLVVSSTLMAMGMMMLPPA 266 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLPFK+I FVL+DGW L+V +V S+ Sbjct: 267 MISLPFKIILFVLVDGWQLMVGTIVNSY 294 >gi|167750712|ref|ZP_02422839.1| hypothetical protein EUBSIR_01690 [Eubacterium siraeum DSM 15702] gi|167656391|gb|EDS00521.1| hypothetical protein EUBSIR_01690 [Eubacterium siraeum DSM 15702] Length = 307 Score = 185 bits (469), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 91/208 (43%), Positives = 130/208 (62%), Gaps = 9/208 (4%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T+LS+AP LL+M+T F R II FS LRT M S PPN+V+ L+LF+T ++M P Sbjct: 98 TVLSLAPSLLVMMTSFARIIICFSFLRTAMQTQSTPPNMVLTGLSLFLTIFIMWPVFSEI 157 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 E QP ++T AI +P FM T D+ F+D+ S + D+ Sbjct: 158 NETAYQPYAAGEMTMEQAIDAAGKPLKTFMLKQTTNDDMKFFLDLKGQSMSDVTGGATDN 217 Query: 167 IE---------YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 I + +IP+F++SEL+R+F++GFLI +PFL+ID++V++ +MAMGMMMLPP Sbjct: 218 ITLENYSEKLGFETVIPAFIVSELKRAFQMGFLIFIPFLVIDLVVSSTLMAMGMMMLPPA 277 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLPFK+I FVL+DGW L+V +V S+ Sbjct: 278 MISLPFKIILFVLVDGWQLMVGTIVNSY 305 >gi|153836933|ref|ZP_01989600.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus AQ3810] gi|149749706|gb|EDM60451.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus AQ3810] Length = 276 Score = 185 bits (469), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 94/214 (43%), Positives = 139/214 (64%), Gaps = 8/214 (3%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D S++ I+ + T+L P ++I++T F R ++V SILR MG+ P N VII +A Sbjct: 69 DYSVTLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 125 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 LF+TF+VMSP L+ + IQP +N Q+T A P FM TR KDL F++M Sbjct: 126 LFLTFFVMSPVLNEINDTAIQPYLNEQVTAREAFDVAQVPMKAFMLKQTRIKDLETFVNM 185 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM Sbjct: 186 SGE-----QVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 240 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 241 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 274 >gi|117618724|ref|YP_855914.1| flagellar biosynthesis protein FliP [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560131|gb|ABK37079.1| flagellar biosynthetic protein FliP [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 259 Score = 185 bits (469), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 92/206 (44%), Positives = 137/206 (66%), Gaps = 5/206 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + T LS P ++IM+T F R IIV ILR +G+ P N V+I +ALFM+F++M Sbjct: 53 LQVLALMTALSFLPAIVIMMTSFTRIIIVLGILRQAIGLQQSPSNQVLIGIALFMSFFIM 112 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP LDR +QP + I A+++ P FM TR KDL+ FM++A N Sbjct: 113 SPVLDRINNEALQPYLAETIQAKEALEKAELPIHQFMLAQTRIKDLNTFMEIA-----NV 167 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + K + R+LIP+F+ SEL+ +F+IGF++ LPFL+ID++VA+I+MAMGMMML P + Sbjct: 168 QVDKPADVPLRVLIPAFVTSELKTAFQIGFMLFLPFLVIDLVVASILMAMGMMMLSPMLV 227 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FV++DGW+L++ +L SF Sbjct: 228 SLPFKLMLFVMVDGWNLILGSLANSF 253 >gi|269836609|ref|YP_003318837.1| flagellar biosynthetic protein FliP [Sphaerobacter thermophilus DSM 20745] gi|269785872|gb|ACZ38015.1| flagellar biosynthetic protein FliP [Sphaerobacter thermophilus DSM 20745] Length = 274 Score = 185 bits (469), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 91/203 (44%), Positives = 134/203 (66%), Gaps = 4/203 (1%) Query: 43 FGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT 102 F + T L++ P LL+MVT F R IIV S R +G+ +PPN V++ LALF+T ++M+P Sbjct: 75 FVLLTFLALLPTLLMMVTSFTRVIIVLSFARNAIGVPQLPPNQVLLGLALFLTIFIMAPV 134 Query: 103 LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT 162 +QP + +I + A+ R P FM TRE+DL+LFM + T Sbjct: 135 WQEVNRTALQPYLAGEIAQAEAMDRAVRPLREFMLRQTRERDLALFMQLGQQPRPRTP-- 192 Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222 D + +L+PSF++SEL+ +F++GF+I +PFLIIDMIV++ +M+MGM+MLPP +SLP Sbjct: 193 --DDVPTWVLVPSFIVSELKTAFQMGFVIFIPFLIIDMIVSSALMSMGMIMLPPVIVSLP 250 Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245 FKV+ FV++DGW L+V +LV SF Sbjct: 251 FKVLLFVMVDGWDLIVRSLVMSF 273 >gi|84388121|ref|ZP_00991017.1| flagellar biosynthesis protein [Vibrio splendidus 12B01] gi|84377188|gb|EAP94058.1| flagellar biosynthesis protein [Vibrio splendidus 12B01] Length = 309 Score = 185 bits (469), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 92/218 (42%), Positives = 143/218 (65%), Gaps = 8/218 (3%) Query: 28 NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87 N D SI+ I+ + T+L P ++I++T F R ++V SILR MG+ P N VI Sbjct: 98 NGGEDYSINLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVI 154 Query: 88 ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147 I +A+F+TF++MSP +++ E +QP +N QI+ A P FM TR KDL Sbjct: 155 IGIAIFLTFFIMSPVINQVNEQAVQPYLNEQISARQAFDVAQGPIKSFMLKQTRIKDLET 214 Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 F++++ + ++T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++M Sbjct: 215 FVEISGA-----EVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLM 269 Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 AMGMMML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 270 AMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 307 >gi|332559786|ref|ZP_08414108.1| FliP2 [Rhodobacter sphaeroides WS8N] gi|332277498|gb|EGJ22813.1| FliP2 [Rhodobacter sphaeroides WS8N] Length = 238 Score = 185 bits (469), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 91/212 (42%), Positives = 136/212 (64%), Gaps = 5/212 (2%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 S++ V+ + T+LS+ P L +M+TCFP + V SILR +G+ PPN++I+SLALF Sbjct: 31 SLTARSVQLIAVITLLSLVPALAMMITCFPFIVTVLSILRQAIGLQQAPPNMLIVSLALF 90 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 +T+YVM P + GI PL N++ A+ A PF FM L+ A Sbjct: 91 LTWYVMDPVFTEAWTRGIGPLTRNELDLPQALAAAAVPFRGFMTGRIDPDTLA-----AL 145 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 + R + + +L+PSF++SE++R+FEIGFLI LPFLIID++V+ ++M+MGMMM Sbjct: 146 QALRPGPAAPPSEVSFSVLVPSFLLSEIQRAFEIGFLIYLPFLIIDLVVSAVLMSMGMMM 205 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PP +S+PFK+ FFV+ DGWSL+ LV+S+ Sbjct: 206 VPPAVVSMPFKLAFFVVADGWSLISGALVRSY 237 >gi|77464887|ref|YP_354391.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides 2.4.1] gi|77389305|gb|ABA80490.1| Type III secretion system inner membrane P protein [Rhodobacter sphaeroides 2.4.1] Length = 239 Score = 185 bits (469), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 91/212 (42%), Positives = 136/212 (64%), Gaps = 5/212 (2%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 S++ V+ + T+LS+ P L +M+TCFP + V SILR +G+ PPN++I+SLALF Sbjct: 32 SLTARSVQLIAVITLLSLVPALAMMITCFPFIVTVLSILRQAIGLQQAPPNMLIVSLALF 91 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 +T+YVM P + GI PL N++ A+ A PF FM L+ A Sbjct: 92 LTWYVMDPVFTEAWTRGIGPLTRNELDLPQALAAAAVPFRGFMTGRIDPDTLA-----AL 146 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 + R + + +L+PSF++SE++R+FEIGFLI LPFLIID++V+ ++M+MGMMM Sbjct: 147 QALRPGPAAPPSEVSFSVLVPSFLLSEIQRAFEIGFLIYLPFLIIDLVVSAVLMSMGMMM 206 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PP +S+PFK+ FFV+ DGWSL+ LV+S+ Sbjct: 207 VPPAVVSMPFKLAFFVVADGWSLISGALVRSY 238 >gi|330808228|ref|YP_004352690.1| flagellar biosynthetic protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376336|gb|AEA67686.1| Flagellar biosynthetic protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 249 Score = 185 bits (469), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 92/201 (45%), Positives = 132/201 (65%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 I T LS P ++++T F R IIVFSILR +G+ P N ++ +ALF+T ++M+P D Sbjct: 50 IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFD 109 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 R + +QP + +IT A+ + P FM TR DL LFM ++ + TDI Sbjct: 110 RVNQDALQPYLAEKITAQDAVAKAEVPIKDFMLAQTRSSDLELFMRLS----KRTDIPSA 165 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D IL+P+F+ SEL+ +F+IGF+I +PFLIID++VA+I+MAMGMMML P ISLPFK Sbjct: 166 DQAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASILMAMGMMMLSPLIISLPFK 225 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW+L++ L SF Sbjct: 226 IMLFVLVDGWALIIGTLAGSF 246 >gi|145298356|ref|YP_001141197.1| flagellar biosynthesis protein FliP [Aeromonas salmonicida subsp. salmonicida A449] gi|142851128|gb|ABO89449.1| Flagellar biosynthesis protein FliP [Aeromonas salmonicida subsp. salmonicida A449] Length = 249 Score = 185 bits (469), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 91/206 (44%), Positives = 139/206 (67%), Gaps = 5/206 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + T LS P ++IM+T F R IIV ILR +G+ P N V+I +ALFM+F++M Sbjct: 43 LQVLALMTALSFLPAVVIMMTSFTRIIIVLGILRQAIGLQQSPSNQVLIGIALFMSFFIM 102 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP LDR + +QP + I A+++ P FM + TR KDL+ FM++A + Sbjct: 103 SPVLDRINDEALQPYLAETIQAREALEKAELPIHQFMLSQTRIKDLNTFMEIA-----DV 157 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + K + R+LIP+F+ SEL+ +F+IGF++ LPFL+ID++VA+I+MAMGMMML P + Sbjct: 158 QVDKPAEVPLRVLIPAFVTSELKTAFQIGFMLFLPFLVIDLVVASILMAMGMMMLSPMLV 217 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FV++DGW+L++ +L SF Sbjct: 218 SLPFKLMLFVMVDGWNLILGSLANSF 243 >gi|330940696|gb|EGH43707.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. pisi str. 1704B] Length = 250 Score = 184 bits (468), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 92/201 (45%), Positives = 133/201 (66%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 I T LS P ++++T F R IIVFSILR +G+ P N ++ +ALF+T ++M+P D Sbjct: 51 IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQAPSNQILTGMALFLTMFIMAPVFD 110 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 R + +QP + +++ A+ + P FM TR DL LFM ++ + TDI Sbjct: 111 RVNQDALQPYLAEKLSAQDAVAKAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTP 166 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D IL+P+F+ISEL+ +F+IGF+I +PFLIIDM+VA+++MAMGMMML P ISLPFK Sbjct: 167 DAAPLTILVPAFVISELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFK 226 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW+L+V L SF Sbjct: 227 IMLFVLVDGWALIVGTLAGSF 247 >gi|284007164|emb|CBA72448.1| flagellar biosynthesis protein FliP [Arsenophonus nasoniae] Length = 245 Score = 184 bits (468), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 96/231 (41%), Positives = 143/231 (61%), Gaps = 12/231 (5%) Query: 23 LHDVMNIPADLSI------STWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74 LH IPA S +W V+T T L P LL+M T F R IIV +LR Sbjct: 17 LHAYAAIPAITSQPLANGGQSWSLPVQTLIFITALGFIPALLLMTTSFTRIIIVLGLLRN 76 Query: 75 GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134 +G + PPN +++ LALFMTF+VMSP D+ + P +IT + A+P Sbjct: 77 ALGTPTAPPNQILLGLALFMTFFVMSPVFDKIYQNAYLPFSEEKITIEVDLSEGAKPLRQ 136 Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194 FM TR+ DL+LF +A+ S T + RIL+P+F+ SEL+ +F+IGF++ +P Sbjct: 137 FMLQQTRQPDLALFARLANDSEYQT----QADVPMRILVPAFITSELKTAFQIGFMLFIP 192 Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 FLIID++VA+++MA+GMMM+PP ++++PFK++ FVL+DGW L++ +L +SF Sbjct: 193 FLIIDLVVASVLMALGMMMVPPATVAMPFKLMLFVLVDGWQLILGSLAQSF 243 >gi|160880831|ref|YP_001559799.1| flagellar biosynthetic protein FliP [Clostridium phytofermentans ISDg] gi|160429497|gb|ABX43060.1| flagellar biosynthetic protein FliP [Clostridium phytofermentans ISDg] Length = 281 Score = 184 bits (468), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 91/194 (46%), Positives = 134/194 (69%), Gaps = 4/194 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +LIM+T F R I+V +R+ +G + PPN V+I LALF+T ++MSP + + Sbjct: 91 APSILIMLTSFIRIIVVLHFVRSALGTQTTPPNQVLIGLALFLTLFIMSPIITNINTNAV 150 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 QPL +IT+ A + EP FM + T EKD+ LF+D+A T++ + Sbjct: 151 QPLSKGEITQEQAFTQGMEPLRDFMFDQTNEKDMQLFLDIAGV----TEVNDRADVPSTA 206 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 LIP+F+ISELR +F IGFLI +PFLIIDM+VA+ +M+MGMMMLPPT+IS+PFK++ F++ Sbjct: 207 LIPAFIISELRAAFIIGFLIYIPFLIIDMVVASTLMSMGMMMLPPTTISMPFKILLFIMA 266 Query: 232 DGWSLLVENLVKSF 245 DGW+L++ +++KSF Sbjct: 267 DGWNLIIGSVIKSF 280 >gi|254474923|ref|ZP_05088309.1| flagellar biosynthetic protein FliP [Ruegeria sp. R11] gi|214029166|gb|EEB70001.1| flagellar biosynthetic protein FliP [Ruegeria sp. R11] Length = 247 Score = 184 bits (468), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 93/212 (43%), Positives = 136/212 (64%), Gaps = 3/212 (1%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 S+S ++ + T+LS+AP LLIMVTCFP + V SILR +G+ PPN+++ISLALF Sbjct: 37 SLSARSIQLILLITVLSLAPGLLIMVTCFPFLVTVLSILRQAIGLQQAPPNMMMISLALF 96 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 +T++VM P + + + GI PL+ QI T ++R PF FM D F +A Sbjct: 97 LTYFVMEPVFNEAWQTGINPLIEEQIDVETGMERALVPFREFM---AARLDPDTFYAIAD 153 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 I L+ SF++SE+ R+F++GFL+ LPFL+ID++VA ++M+MGMMM Sbjct: 154 LRPGTAGIDPTPDAPLSTLVSSFLLSEIARAFQVGFLVFLPFLVIDLVVAAVLMSMGMMM 213 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PP +SLPFK+ FFV+ DGWSL+ LV+S+ Sbjct: 214 VPPAVVSLPFKLAFFVVADGWSLIASALVRSY 245 >gi|121596084|ref|YP_987980.1| flagellar biosynthesis protein FliP [Acidovorax sp. JS42] gi|120608164|gb|ABM43904.1| flagellar biosynthetic protein FliP [Acidovorax sp. JS42] Length = 251 Score = 184 bits (468), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 94/206 (45%), Positives = 134/206 (65%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++T FT LS P +L+M+T F R +IV S+LR +G S PPN VII L+LF+T +VM Sbjct: 48 IQTLLFFTALSFLPAVLLMMTGFTRIVIVLSLLRQAIGTQSAPPNQVIIGLSLFLTLFVM 107 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 PTLD+ + P N IT AIQ+ P FM TR+ D +LF +A T Sbjct: 108 GPTLDKVYQEAYVPYTTNAITFEQAIQKAEAPMRGFMLKQTRQSDFALFARLAKLDEGVT 167 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 T R+L+P+F+ SEL+ +F+IGF+I +PFLIIDM+V++++M++GMMML P + Sbjct: 168 AETA----PLRVLVPAFVTSELKSAFQIGFMIFIPFLIIDMVVSSVLMSLGMMMLSPVLV 223 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 +LPFK++ FVL DGW+LL+ +L SF Sbjct: 224 ALPFKLMLFVLADGWNLLIGSLAASF 249 >gi|323705431|ref|ZP_08117006.1| flagellar biosynthetic protein FliP [Thermoanaerobacterium xylanolyticum LX-11] gi|323535333|gb|EGB25109.1| flagellar biosynthetic protein FliP [Thermoanaerobacterium xylanolyticum LX-11] Length = 249 Score = 184 bits (468), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 90/194 (46%), Positives = 136/194 (70%), Gaps = 5/194 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +LIM+T F R I+V S LR +G+ +PPN V+I LALF+TF++M+P + + I Sbjct: 60 APSILIMMTSFTRIIVVLSFLRNALGLQQMPPNQVLIGLALFLTFFIMAPVGSQINKDSI 119 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 QP M +IT A + +P FM TR+ DL+LF++++ ++ + + R+ Sbjct: 120 QPYMQGKITPQEAYVKARDPLKNFMLKQTRKNDLNLFINLSKLKVKSVN-----DVPLRV 174 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 +IPSF+ISEL+ +FEIGF+I +PFLIIDM+VA+++M+MGM MLPP ISLPFK++ F+L+ Sbjct: 175 VIPSFIISELKTAFEIGFIIYIPFLIIDMVVASVLMSMGMFMLPPVLISLPFKLLLFILV 234 Query: 232 DGWSLLVENLVKSF 245 DGW++L ++LV F Sbjct: 235 DGWNILAKSLVIGF 248 >gi|157371197|ref|YP_001479186.1| flagellar biosynthesis protein FliP [Serratia proteamaculans 568] gi|157322961|gb|ABV42058.1| flagellar biosynthetic protein FliP [Serratia proteamaculans 568] Length = 274 Score = 184 bits (468), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 89/206 (43%), Positives = 140/206 (67%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T + T LS P +L+M+T F R IIV +LR +G S PPN V++ LALF+TF++M Sbjct: 71 VQTLVLLTSLSFLPAMLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFIM 130 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP D+ + P ++I+ A+ + ++P FM TRE DL+L+ +A+ Sbjct: 131 SPVFDKVYQDAYLPFSQDKISLDVAMDKGSQPLREFMLRQTRETDLALYAKLANLP---- 186 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + RIL+P+++ SEL+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP +I Sbjct: 187 PLAGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATI 246 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 247 SLPFKLMLFVLVDGWQLLLGSLAQSF 272 >gi|145598592|ref|YP_001162668.1| flagellar biosynthesis protein FliP [Yersinia pestis Pestoides F] gi|149366232|ref|ZP_01888267.1| flagellar biosynthetic protein FliP [Yersinia pestis CA88-4125] gi|153950312|ref|YP_001401271.1| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis IP 31758] gi|165925983|ref|ZP_02221815.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Orientalis str. F1991016] gi|165938702|ref|ZP_02227257.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Orientalis str. IP275] gi|166010952|ref|ZP_02231850.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua str. E1979001] gi|166210900|ref|ZP_02236935.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua str. B42003004] gi|167420038|ref|ZP_02311791.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425832|ref|ZP_02317585.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170024627|ref|YP_001721132.1| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis YPIII] gi|186895134|ref|YP_001872246.1| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis PB1/+] gi|218928941|ref|YP_002346816.1| flagellar biosynthesis protein FliP [Yersinia pestis CO92] gi|229896265|ref|ZP_04511435.1| flagellar biosynthetic protein FliP [Yersinia pestis Pestoides A] gi|229897202|ref|ZP_04512358.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Orientalis str. PEXU2] gi|229897929|ref|ZP_04513080.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Orientalis str. India 195] gi|229902840|ref|ZP_04517957.1| flagellar biosynthetic protein FliP [Yersinia pestis Nepal516] gi|270486627|ref|ZP_06203701.1| flagellar biosynthetic protein FliP [Yersinia pestis KIM D27] gi|294504013|ref|YP_003568075.1| flagellar biosynthesis protein [Yersinia pestis Z176003] gi|21959354|gb|AAM86043.1|AE013852_5 flagellar biosynthesis protein [Yersinia pestis KIM 10] gi|45436250|gb|AAS61806.1| flagellar biosynthesis protein [Yersinia pestis biovar Microtus str. 91001] gi|51589311|emb|CAH20932.1| flagellar biosynthetic protein FliP [Yersinia pseudotuberculosis IP 32953] gi|108776112|gb|ABG18631.1| flagellar biosynthetic protein FliP [Yersinia pestis Nepal516] gi|108779105|gb|ABG13163.1| flagellar biosynthetic protein FliP [Yersinia pestis Antiqua] gi|145210288|gb|ABP39695.1| flagellar biosynthetic protein FliP [Yersinia pestis Pestoides F] gi|149292645|gb|EDM42719.1| flagellar biosynthetic protein FliP [Yersinia pestis CA88-4125] gi|152961807|gb|ABS49268.1| flagellar biosynthetic protein FliP [Yersinia pseudotuberculosis IP 31758] gi|165913316|gb|EDR31938.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Orientalis str. IP275] gi|165922187|gb|EDR39364.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Orientalis str. F1991016] gi|165990296|gb|EDR42597.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua str. E1979001] gi|166208080|gb|EDR52560.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua str. B42003004] gi|166961733|gb|EDR57754.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167055231|gb|EDR65028.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751161|gb|ACA68679.1| flagellar biosynthetic protein FliP [Yersinia pseudotuberculosis YPIII] gi|186698160|gb|ACC88789.1| flagellar biosynthetic protein FliP [Yersinia pseudotuberculosis PB1/+] gi|229680287|gb|EEO76386.1| flagellar biosynthetic protein FliP [Yersinia pestis Nepal516] gi|229688970|gb|EEO81035.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Orientalis str. India 195] gi|229693539|gb|EEO83588.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701188|gb|EEO89217.1| flagellar biosynthetic protein FliP [Yersinia pestis Pestoides A] gi|262361801|gb|ACY58522.1| flagellar biosynthesis protein [Yersinia pestis D106004] gi|262366063|gb|ACY62620.1| flagellar biosynthesis protein [Yersinia pestis D182038] gi|270335131|gb|EFA45908.1| flagellar biosynthetic protein FliP [Yersinia pestis KIM D27] gi|294354472|gb|ADE64813.1| flagellar biosynthesis protein [Yersinia pestis Z176003] gi|320015442|gb|ADV99013.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 274 Score = 184 bits (468), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 94/227 (41%), Positives = 146/227 (64%), Gaps = 6/227 (2%) Query: 21 SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 + L +++ P +W V+T T LS P L+M+T F R IIV +LR MG Sbjct: 50 AQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLLRNAMGT 109 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 S PPN V++ LALF+TF++MSP D+ + P ++I+ A+ + ++P FM Sbjct: 110 PSAPPNQVMLGLALFLTFFIMSPVFDKVYQEAYLPFSQDKISMDVALDKGSQPLREFMLR 169 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 TRE DL+L+ +A+ + + + RIL+P+++ SEL+ +F+IGF + +PFLII Sbjct: 170 QTRESDLALYARLANLP----PLEGPEMVPMRILLPAYVTSELKTAFQIGFTVFIPFLII 225 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 D++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 226 DLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 272 >gi|330972449|gb|EGH72515.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. aceris str. M302273PT] Length = 250 Score = 184 bits (468), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 92/201 (45%), Positives = 133/201 (66%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 I T LS P ++++T F R IIVFSILR +G+ P N ++ +ALF+T ++M+P D Sbjct: 51 IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFD 110 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 R + +QP + +++ A+ + P FM TR DL LFM ++ + TDI Sbjct: 111 RVNQDALQPYLAEKLSAQDAVAKAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTP 166 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D IL+P+F+ISEL+ +F+IGF+I +PFLIIDM+VA+++MAMGMMML P ISLPFK Sbjct: 167 DAAPLTILVPAFVISELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFK 226 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW+L+V L SF Sbjct: 227 IMLFVLVDGWALIVGTLAGSF 247 >gi|326796455|ref|YP_004314275.1| flagellar biosynthetic protein FliP [Marinomonas mediterranea MMB-1] gi|326547219|gb|ADZ92439.1| flagellar biosynthetic protein FliP [Marinomonas mediterranea MMB-1] Length = 251 Score = 184 bits (468), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 89/201 (44%), Positives = 138/201 (68%), Gaps = 3/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 I T L++ P LIM+T F R IIV SILR +G+ P N +I+ +ALF+T ++M PTLD Sbjct: 52 IMTALTLLPSALIMMTSFTRIIIVLSILRQALGLQQAPSNQIILGMALFLTLFIMGPTLD 111 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + E +QP +++ +T A++ + P FM TRE D++LF+ +A + I Sbjct: 112 QINESALQPYLSDNMTSLQAVKAASIPIREFMLGQTREDDIALFVKLAG---KEGQIPSL 168 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + + + IL+P+F+ SEL+ +F+IGF++ +PFLI+DM+VA+++MAMGMMML P ISLPFK Sbjct: 169 EDLPFTILMPAFVTSELKTAFQIGFMLFIPFLIVDMVVASVLMAMGMMMLSPIIISLPFK 228 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FV++DGWS+++ L SF Sbjct: 229 IMLFVMVDGWSMIMGTLAASF 249 >gi|238755315|ref|ZP_04616658.1| Flagellar biosynthetic protein fliP [Yersinia ruckeri ATCC 29473] gi|238706451|gb|EEP98825.1| Flagellar biosynthetic protein fliP [Yersinia ruckeri ATCC 29473] Length = 262 Score = 184 bits (468), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 94/227 (41%), Positives = 146/227 (64%), Gaps = 6/227 (2%) Query: 21 SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 + L +++ P +W V+T + T LS P L+M+T F R IIV +LR +G Sbjct: 38 AQLPGIISQPLANGGQSWSLPVQTLVLITSLSFLPAALLMMTSFTRIIIVLGLLRNALGT 97 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 S PPN V++ LALF+TF++MSP D+ + P ++I+ AI + A+P FM Sbjct: 98 PSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMDIAIDKGAQPLREFMLR 157 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 TRE DL+L+ +A+ + + RIL+P+++ SEL+ +F+IGF + +PFLII Sbjct: 158 QTRETDLALYARLANMPA----FEGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLII 213 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 D++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 214 DLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 260 >gi|260222420|emb|CBA31966.1| Flagellar biosynthetic protein fliP [Curvibacter putative symbiont of Hydra magnipapillata] Length = 218 Score = 184 bits (467), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 92/207 (44%), Positives = 135/207 (65%), Gaps = 4/207 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++T FT LS P +L+M+T F R +IV S+LR +G S PPN VI+ L+LF+TF+VM Sbjct: 15 IQTLLFFTALSFIPAVLLMMTGFTRIVIVLSLLRQALGTQSAPPNQVIVGLSLFLTFFVM 74 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 PT DR QP ++ A+Q+ P FM TR+ D SLF +A Sbjct: 75 GPTFDRIYADAYQPYSQGTMSFDQALQKAEVPIRNFMVKQTRQSDFSLFAKLAKLPPD-- 132 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 K D R+L+P+F+ISEL+ +F+IGF+I +PFL+ID++VA+++M++GMMML P + Sbjct: 133 --MKADTAPIRVLVPAFVISELKSAFQIGFMIFIPFLVIDIVVASVLMSLGMMMLSPVLV 190 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246 +LPFK++ FVL DGW+LL+ +L SF+ Sbjct: 191 ALPFKLMLFVLADGWNLLIGSLAASFV 217 >gi|330964683|gb|EGH64943.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. actinidiae str. M302091] Length = 250 Score = 184 bits (467), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 92/201 (45%), Positives = 133/201 (66%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 I T LS P ++++T F R IIVFSILR +G+ P N ++ +ALF+T ++M+P D Sbjct: 51 IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFD 110 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 R + +QP + ++T A+ + P FM TR DL LFM ++ + TDI Sbjct: 111 RVNQDALQPYLAGKLTAQDAVAKAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTP 166 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D IL+P+F+ISEL+ +F+IGF+I +PFLIID++VA+++MAMGMMML P ISLPFK Sbjct: 167 DAAPLTILVPAFVISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK 226 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW+L+V L SF Sbjct: 227 IMLFVLVDGWALIVGTLAGSF 247 >gi|116694514|ref|YP_728725.1| flagellar biosynthesis protein FliP [Ralstonia eutropha H16] gi|113529013|emb|CAJ95360.1| flagellar biosynthesis protein [Ralstonia eutropha H16] Length = 261 Score = 184 bits (467), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 98/224 (43%), Positives = 148/224 (66%), Gaps = 6/224 (2%) Query: 25 DVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82 V++ PA W V+T + T LS P ++++T F R IIV +LR+ +G + P Sbjct: 41 GVISKPAPGGGQIWSLPVQTLVLLTSLSFLPAAMLLMTGFTRIIIVLGLLRSALGTATSP 100 Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142 PN V++ L+LF+TF+VM+P DR +PL N+I+ A + AEP FM TRE Sbjct: 101 PNQVLVGLSLFLTFFVMAPVFDRVYNDAYKPLSENKISLEAAAAKAAEPLKAFMLRQTRE 160 Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202 KDL++F MA + ++ + + IL+P+F+ SEL+ +F+IGF I +PFLIID++V Sbjct: 161 KDLAMFAQMAKAP----EMQGPEEVPLSILVPAFVTSELKTAFQIGFTIFIPFLIIDLVV 216 Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 A+++MAMGMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF+ Sbjct: 217 ASVLMAMGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSFM 260 >gi|224418310|ref|ZP_03656316.1| flagellar biosynthesis protein FliP [Helicobacter canadensis MIT 98-5491] gi|253827632|ref|ZP_04870517.1| flagellar biosynthesis protein [Helicobacter canadensis MIT 98-5491] gi|313141841|ref|ZP_07804034.1| flagellar biosynthesis protein [Helicobacter canadensis MIT 98-5491] gi|253511038|gb|EES89697.1| flagellar biosynthesis protein [Helicobacter canadensis MIT 98-5491] gi|313130872|gb|EFR48489.1| flagellar biosynthesis protein [Helicobacter canadensis MIT 98-5491] Length = 250 Score = 184 bits (467), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 97/218 (44%), Positives = 144/218 (66%), Gaps = 7/218 (3%) Query: 28 NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87 N PADL I+ + T+L +AP L++M T F R +IVFS LRT +G PP ++ Sbjct: 39 NEPADL---VAILNIVVVLTLLVLAPSLILMATSFARLLIVFSFLRTALGTQQSPPTQLL 95 Query: 88 ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147 +S AL +T ++M P E G++P + +I+ A R ++PF FM NTR KDL+L Sbjct: 96 VSFALILTMFIMEPVFKEGYEQGVKPYVAKEISYQEAFVRASQPFKDFMIRNTRPKDLAL 155 Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 F + + T + + I +P+F+ISE++ +F+IGFL+ LPFL+IDM++++I+M Sbjct: 156 FYRIRGMENPQT----AQDVPFTIALPAFIISEMKTAFQIGFLLYLPFLVIDMVISSILM 211 Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 AMGMMMLPPT ISLPFK++ F+L+DG++LL NLV+SF Sbjct: 212 AMGMMMLPPTMISLPFKILIFILVDGFNLLTMNLVESF 249 >gi|146282916|ref|YP_001173069.1| flagellar biosynthetic protein FliP [Pseudomonas stutzeri A1501] gi|145571121|gb|ABP80227.1| flagellar biosynthetic protein FliP [Pseudomonas stutzeri A1501] Length = 199 Score = 184 bits (467), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 93/199 (46%), Positives = 130/199 (65%), Gaps = 4/199 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T LS P ++++T F R IIVFSILR +G+ P N ++I L LF+T ++M+P DR Sbjct: 2 TALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILIGLTLFLTLFIMAPVFDRI 61 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 + +QP ++ QI AI R P FM TRE DL LF+ ++ TDI + Sbjct: 62 NQDALQPYLSEQIPAQEAIARAEVPLKNFMLAQTRESDLELFVRLSQ----RTDIASPEA 117 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA+++MAMGMMML P ISLPFK++ Sbjct: 118 APMTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIM 177 Query: 227 FFVLIDGWSLLVENLVKSF 245 FVL+DGW L++ L SF Sbjct: 178 LFVLVDGWGLIIGTLAGSF 196 >gi|68343342|gb|AAY90948.1| flagellar biosynthetic protein FliP [Pseudomonas fluorescens Pf-5] Length = 241 Score = 184 bits (467), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 90/201 (44%), Positives = 132/201 (65%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 I T LS P ++++T F R IIVFSILR +G+ P N ++ +ALF+T ++M+P D Sbjct: 42 IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFD 101 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 R + +QP + ++T A+ + P FM TR DL LFM ++ + TDI Sbjct: 102 RVNQDALQPYLAEKLTAQDAVAKAQVPIKDFMLAQTRSSDLELFMRLS----KRTDIASP 157 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D IL+P+F+ SEL+ +F+IGF+I +PFLIID++VA+++MAMGMMML P ISLPFK Sbjct: 158 DQAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK 217 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW+L++ L SF Sbjct: 218 IMLFVLVDGWALIIGTLAGSF 238 >gi|330961233|gb|EGH61493.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. maculicola str. ES4326] Length = 250 Score = 184 bits (467), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 92/201 (45%), Positives = 133/201 (66%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 I T LS P ++++T F R IIVFSILR +G+ P N ++ +ALF+T ++M+P D Sbjct: 51 IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFD 110 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 R + +QP + ++T A+ + P FM TR DL LFM ++ + TDI Sbjct: 111 RVNQDALQPYLAEKLTAQDAVAKAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTP 166 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D IL+P+F+ISEL+ +F+IGF+I +PFLIID++VA+++MAMGMMML P ISLPFK Sbjct: 167 DAAPLTILVPAFVISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK 226 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW+L+V L SF Sbjct: 227 IMLFVLVDGWALIVGTLAGSF 247 >gi|71735211|ref|YP_275528.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555764|gb|AAZ34975.1| flagellar biosynthetic protein FliP [Pseudomonas syringae pv. phaseolicola 1448A] gi|320325127|gb|EFW81196.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. glycinea str. B076] gi|320329386|gb|EFW85379.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. glycinea str. race 4] gi|330889047|gb|EGH21708.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. mori str. 301020] Length = 250 Score = 184 bits (467), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 103/248 (41%), Positives = 153/248 (61%), Gaps = 23/248 (9%) Query: 9 LFLVTPELVFAKSSLHDVMNIPA-----------DLSISTWIVRTFGIFTILSIAPILLI 57 L +VTP ++ A D ++IPA + S+S I+ I T LS P ++ Sbjct: 12 LVMVTPAVLAA-----DPLSIPAITLSNGADGQQEYSVSLQILL---IMTALSFIPAFVM 63 Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 ++T F R IIVFSILR +G+ P N ++ +ALF+T ++M+P DR + +QP + Sbjct: 64 LMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAE 123 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177 +++ A+ + P FM TR DL LFM ++ + TDI D IL+P+F+ Sbjct: 124 KLSAQDAVAKAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTPDAAPLTILVPAFV 179 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 ISEL+ +F+IGF+I +PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW+L+ Sbjct: 180 ISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALI 239 Query: 238 VENLVKSF 245 V L SF Sbjct: 240 VGTLAGSF 247 >gi|327399031|ref|YP_004339900.1| flagellar biosynthetic protein FliP [Hippea maritima DSM 10411] gi|327181660|gb|AEA33841.1| flagellar biosynthetic protein FliP [Hippea maritima DSM 10411] Length = 249 Score = 184 bits (467), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 92/195 (47%), Positives = 134/195 (68%), Gaps = 4/195 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +LIM+T F R IIV +ILR +G +PPN ++I +ALF+T ++MSP ++ + Sbjct: 58 APSILIMMTSFTRIIIVLAILRQALGTQQMPPNQILIGIALFLTLFIMSPQINTIYKTAY 117 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 PL N+IT A + +P FM TR+KDL+LF+ +A + + I Sbjct: 118 LPLQKNEITLEGAYKNATKPLKTFMLKQTRQKDLALFLRIAKKPNPKNP----QELSMDI 173 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 +IP+F+ISEL+ +FE+GF+I +PFLIIDM+V++I+M+MGMMMLPP ISLPFK++ FVL Sbjct: 174 VIPAFIISELKTAFEMGFIIYIPFLIIDMVVSSILMSMGMMMLPPIMISLPFKLLIFVLA 233 Query: 232 DGWSLLVENLVKSFI 246 DGW+L+V +L KSF+ Sbjct: 234 DGWNLVVMSLFKSFM 248 >gi|328496288|gb|AEB21292.1| FliP [Yersinia ruckeri] Length = 263 Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 94/227 (41%), Positives = 146/227 (64%), Gaps = 6/227 (2%) Query: 21 SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 + L +++ P +W V+T + T LS P L+M+T F R IIV +LR +G Sbjct: 39 AQLPGIISQPLANGGQSWSLPVQTLVLITSLSFLPAALLMMTSFTRIIIVLGLLRNALGT 98 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 S PPN V++ LALF+TF++MSP D+ + P ++I+ AI + A+P FM Sbjct: 99 PSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMDIAIDKGAQPLREFMLR 158 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 TRE DL+L+ +A+ + + RIL+P+++ SEL+ +F+IGF + +PFLII Sbjct: 159 QTRETDLALYARLANMPA----FEGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLII 214 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 D++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 215 DLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 261 >gi|237750901|ref|ZP_04581381.1| flagellar biosynthesis protein FliP [Helicobacter bilis ATCC 43879] gi|229373346|gb|EEO23737.1| flagellar biosynthesis protein FliP [Helicobacter bilis ATCC 43879] Length = 275 Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 93/202 (46%), Positives = 134/202 (66%), Gaps = 8/202 (3%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP L++M+T F R +IV LRT +G PP V++SLA+ +TF++M P + + +GI Sbjct: 71 APSLVLMMTSFTRILIVLGFLRTALGTQQSPPTQVLVSLAMILTFFIMEPVIKDAYNVGI 130 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD--ITKN----- 164 +P M +I A + PF FM NTR D++LF + + D TK Sbjct: 131 KPYMEEKIGYEEAFEETMRPFKKFMLMNTRHSDIALFYKIRNEEPPQMDNITTKEQFEAL 190 Query: 165 -DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 D + I++PSFMISEL+ +F+IGFL+ LPFL+IDM++A+++MAMGMMMLPP ISLPF Sbjct: 191 IDKVSLSIILPSFMISELKTAFQIGFLLYLPFLVIDMVIASVLMAMGMMMLPPVMISLPF 250 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K++ FVL+DG++LL+ NLV+SF Sbjct: 251 KILIFVLVDGFNLLIWNLVRSF 272 >gi|123442774|ref|YP_001006751.1| flagellar biosynthesis protein FliP [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089735|emb|CAL12588.1| flagellar biosynthetic protein FliP [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 228 Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 94/229 (41%), Positives = 147/229 (64%), Gaps = 6/229 (2%) Query: 19 AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 A + L +++ P +W V+T T LS P L+M+T F R IIV +LR + Sbjct: 2 AMAQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLLRNAL 61 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G S PPN V++ LALF+TF++MSP D+ + P ++I+ A+ + ++P FM Sbjct: 62 GTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAMDKGSQPLREFM 121 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 TRE DL+L+ +A+ + + + RIL+P+++ SEL+ +F+IGF + +PFL Sbjct: 122 LRQTRESDLALYARLANLPP----LEGPEVVPLRILLPAYVTSELKTAFQIGFTVFIPFL 177 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IID++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 178 IIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 226 >gi|238758099|ref|ZP_04619279.1| Flagellar biosynthetic protein fliP [Yersinia aldovae ATCC 35236] gi|238703637|gb|EEP96174.1| Flagellar biosynthetic protein fliP [Yersinia aldovae ATCC 35236] Length = 249 Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 95/229 (41%), Positives = 146/229 (63%), Gaps = 6/229 (2%) Query: 19 AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 A + L +++ P +W V+T T LS P L+M+T F R IIV +LR + Sbjct: 23 ALAQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLLRNAL 82 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G S PPN V++ L LF+TF++MSP D+ + P ++I+ AI + A+P FM Sbjct: 83 GTPSAPPNQVMLGLTLFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAIDKGAQPLREFM 142 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 TRE DL+L+ +A+ + + + RIL+P+++ SEL+ +F+IGF + +PFL Sbjct: 143 LRQTRESDLALYARLANLPP----LEGPEVVPMRILLPAYVTSELKTAFQIGFTVFIPFL 198 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IID++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 199 IIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 247 >gi|254228442|ref|ZP_04921868.1| flagellar biosynthetic protein FliP, putative [Vibrio sp. Ex25] gi|262393598|ref|YP_003285452.1| flagellar biosynthesis protein FliP [Vibrio sp. Ex25] gi|151939030|gb|EDN57862.1| flagellar biosynthetic protein FliP, putative [Vibrio sp. Ex25] gi|262337192|gb|ACY50987.1| flagellar biosynthesis protein FliP [Vibrio sp. Ex25] Length = 289 Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 93/214 (43%), Positives = 137/214 (64%), Gaps = 8/214 (3%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D S++ I+ + T+L P ++I++T F R ++V SILR MG+ P N VII +A Sbjct: 82 DYSVTLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 138 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 LF+TF+VMSP L+ + +QP +N Q+T A P FM TR KDL F+ M Sbjct: 139 LFLTFFVMSPVLNEINDKAVQPYLNEQVTAREAFDAAQAPMKAFMLKQTRIKDLETFVTM 198 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + N + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM Sbjct: 199 SGEQVENPE-----DVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 253 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 254 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287 >gi|91223555|ref|ZP_01258820.1| flagellar biosynthesis protein P [Vibrio alginolyticus 12G01] gi|91191641|gb|EAS77905.1| flagellar biosynthesis protein P [Vibrio alginolyticus 12G01] Length = 289 Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 93/214 (43%), Positives = 137/214 (64%), Gaps = 8/214 (3%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D S++ I+ + T+L P ++I++T F R ++V SILR MG+ P N VII +A Sbjct: 82 DYSVTLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 138 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 LF+TF+VMSP L+ + +QP +N Q+T A P FM TR KDL F+ M Sbjct: 139 LFLTFFVMSPVLNEINDKAVQPYLNEQVTAREAFDAAQAPMKAFMLKQTRIKDLETFVTM 198 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + N + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM Sbjct: 199 SGEQVENPE-----DVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 253 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 254 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287 >gi|330876029|gb|EGH10178.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|331016991|gb|EGH97047.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 250 Score = 184 bits (466), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 92/201 (45%), Positives = 133/201 (66%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 I T LS P ++++T F R IIVFSILR +G+ P N ++ +ALF+T ++M+P D Sbjct: 51 IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFD 110 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 R + +QP + ++T A+ + P FM TR DL LFM ++ + TDI Sbjct: 111 RVNQDALQPYLAEKLTAQDAVAKAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTP 166 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D IL+P+F+ISEL+ +F+IGF+I +PFLIID++VA+++MAMGMMML P ISLPFK Sbjct: 167 DAAPLTILVPAFVISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK 226 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW+L+V L SF Sbjct: 227 IMLFVLVDGWALIVGTLAGSF 247 >gi|28869176|ref|NP_791795.1| flagellar biosynthetic protein FliP [Pseudomonas syringae pv. tomato str. DC3000] gi|213967547|ref|ZP_03395695.1| flagellar biosynthetic protein FliP [Pseudomonas syringae pv. tomato T1] gi|301382884|ref|ZP_07231302.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. tomato Max13] gi|302061094|ref|ZP_07252635.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. tomato K40] gi|302131290|ref|ZP_07257280.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852416|gb|AAO55490.1| flagellar biosynthetic protein FliP [Pseudomonas syringae pv. tomato str. DC3000] gi|213927848|gb|EEB61395.1| flagellar biosynthetic protein FliP [Pseudomonas syringae pv. tomato T1] Length = 250 Score = 184 bits (466), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 92/201 (45%), Positives = 133/201 (66%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 I T LS P ++++T F R IIVFSILR +G+ P N ++ +ALF+T ++M+P D Sbjct: 51 IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFD 110 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 R + +QP + ++T A+ + P FM TR DL LFM ++ + TDI Sbjct: 111 RVNQDALQPYLAEKLTAQDAVAKAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTP 166 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D IL+P+F+ISEL+ +F+IGF+I +PFLIID++VA+++MAMGMMML P ISLPFK Sbjct: 167 DAAPLTILVPAFVISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK 226 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW+L+V L SF Sbjct: 227 IMLFVLVDGWALIVGTLAGSF 247 >gi|258592488|emb|CBE68797.1| Flagellar transport protein FliP [NC10 bacterium 'Dutch sediment'] Length = 243 Score = 184 bits (466), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 88/201 (43%), Positives = 135/201 (67%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T+L++AP L+IM+T F R IIV S LRT MG +PPN V+I L LF+TF+VM+P + Sbjct: 46 LLTLLAMAPALVIMLTSFSRIIIVLSFLRTAMGTQQMPPNQVLIGLTLFLTFFVMAPVGE 105 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + +QP ++ Q+ + A++R +P FM TRE+DL+L + +A Sbjct: 106 QINREALQPYLSRQLAQEAALERALQPLRTFMFKQTRERDLALMVHLARLERPKDRAAVP 165 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 H +L+P++ ISELR +F+IGF++ +PFL+IDM+V++++++MGM+ LPP IS PFK Sbjct: 166 TH----VLVPAYAISELRTAFQIGFVLFIPFLVIDMVVSSVLISMGMLFLPPPVISFPFK 221 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL DGW L+V +LV F Sbjct: 222 LLLFVLADGWHLVVRSLVIGF 242 >gi|330861094|emb|CBX71361.1| flagellar biosynthetic protein fliP [Yersinia enterocolitica W22703] Length = 237 Score = 184 bits (466), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 94/229 (41%), Positives = 147/229 (64%), Gaps = 6/229 (2%) Query: 19 AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 A + L +++ P +W V+T T LS P L+M+T F R IIV +LR + Sbjct: 11 AMAQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLLRNAL 70 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G S PPN V++ LALF+TF++MSP D+ + P ++I+ A+ + ++P FM Sbjct: 71 GTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAMDKGSQPLREFM 130 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 TRE DL+L+ +A+ + + + RIL+P+++ SEL+ +F+IGF + +PFL Sbjct: 131 LRQTRESDLALYARLANLP----PLEGPEVVPLRILLPAYVTSELKTAFQIGFTVFIPFL 186 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IID++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 187 IIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 235 >gi|258514015|ref|YP_003190237.1| flagellar biosynthesis protein FliP [Desulfotomaculum acetoxidans DSM 771] gi|257777720|gb|ACV61614.1| flagellar biosynthetic protein FliP [Desulfotomaculum acetoxidans DSM 771] Length = 256 Score = 184 bits (466), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 90/193 (46%), Positives = 131/193 (67%), Gaps = 4/193 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +L+M+T F R +IV S LR +G PPN V+I LALF+T ++M P + E ++ Sbjct: 67 PAILLMMTSFTRIVIVLSFLRNALGTQQTPPNQVLIGLALFLTVFIMKPVYNDLNEQALK 126 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P + NQIT+ A R A P FM TRE DL+LF+ +A + +ND + ++ Sbjct: 127 PYLANQITQEEAQNRAAGPLKEFMLKQTRESDLALFIGVAKAQKPQN---RND-VPLHLV 182 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 IP+F+ISEL+ SF++GFLI +PFL+ID +VA+ +M+MGM MLPP SLPFK++ FV++D Sbjct: 183 IPAFIISELKTSFQMGFLIYIPFLVIDAVVASTLMSMGMFMLPPAMFSLPFKLLLFVMVD 242 Query: 233 GWSLLVENLVKSF 245 GW L+V++LV+SF Sbjct: 243 GWYLVVKSLVESF 255 >gi|328958270|ref|YP_004375656.1| flagellar biosynthesis protein FliP [Carnobacterium sp. 17-4] gi|328674594|gb|AEB30640.1| flagellar biosynthesis protein FliP [Carnobacterium sp. 17-4] Length = 254 Score = 184 bits (466), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 98/249 (39%), Positives = 157/249 (63%), Gaps = 16/249 (6%) Query: 7 FALFLVT----PELVFAK------SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILL 56 F LFL++ P++V A S L + + ++ ++ +V+ F + T LS+AP L Sbjct: 11 FTLFLMSSLLFPQVVTAAEITDGLSGLSEALG--SETGETSQVVQLFLLTTALSLAPTFL 68 Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116 ++ TCF R I+V S +R+ +G PPNLV++ +ALF++ ++M P + I P +N Sbjct: 69 VLTTCFTRIIVVLSFVRSSLGTQQNPPNLVLMGIALFLSLFIMQPVYTDVMNEAITPYIN 128 Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176 +I+ A + P FM TR++D+ LF+D++ ++ + D+ + + IP+F Sbjct: 129 EEISGQAAFESAELPIKEFMYKQTRDEDIQLFLDISETA-KPADV---KELPLTVAIPAF 184 Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236 +ISELR +F IGFLI +PFL+ID++VA+I+M+MGM ML P ISLPFK++ FVL+DGW L Sbjct: 185 IISELRTAFSIGFLIFIPFLVIDIVVASILMSMGMFMLSPVMISLPFKLLLFVLVDGWYL 244 Query: 237 LVENLVKSF 245 +VE+LV F Sbjct: 245 VVESLVTGF 253 >gi|238788324|ref|ZP_04632118.1| Flagellar biosynthetic protein fliP [Yersinia frederiksenii ATCC 33641] gi|238723570|gb|EEQ15216.1| Flagellar biosynthetic protein fliP [Yersinia frederiksenii ATCC 33641] Length = 243 Score = 184 bits (466), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 94/229 (41%), Positives = 147/229 (64%), Gaps = 6/229 (2%) Query: 19 AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 A + L +++ P +W V+T T LS P L+M+T F R IIV +LR + Sbjct: 17 ALAQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLLRNAL 76 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G S PPN V++ LALF+TF++MSP D+ + P ++I+ A+ + ++P FM Sbjct: 77 GTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAMDKGSQPLREFM 136 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 TRE DL+L+ +A+ + + + RIL+P+++ SEL+ +F+IGF + +PFL Sbjct: 137 LRQTRESDLALYARLANIPA----LEGPEVVPMRILLPAYVTSELKTAFQIGFTVFIPFL 192 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IID++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 193 IIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 241 >gi|188592196|ref|YP_001796794.1| flagellar biosynthesis protein flip [Cupriavidus taiwanensis LMG 19424] gi|170938570|emb|CAP63557.1| fliP: flagellar biosynthesis protein. fliP/mopC/spaP family [Cupriavidus taiwanensis LMG 19424] Length = 274 Score = 184 bits (466), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 98/224 (43%), Positives = 147/224 (65%), Gaps = 6/224 (2%) Query: 25 DVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82 V++ PA W V+T + T LS P ++M+T F R IIV +LR +G + P Sbjct: 54 GVISKPAPGGGQIWSLPVQTLVLLTSLSFLPAAMLMMTGFTRVIIVLGLLRNALGTATSP 113 Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142 PN V++ L+LF+TF+VM+P DR +PL N+++ A + AEP FM TRE Sbjct: 114 PNQVLVGLSLFLTFFVMAPVFDRVYNDAYKPLSENKLSLEAAAAKAAEPLKAFMLRQTRE 173 Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202 KDL++F MA + ++ + + IL+P+F+ SEL+ +F+IGF I +PFLIID++V Sbjct: 174 KDLAMFAQMAKAP----EMQGPEEVPLSILVPAFVTSELKTAFQIGFTIFIPFLIIDLVV 229 Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 A+++MAMGMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF+ Sbjct: 230 ASVLMAMGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSFM 273 >gi|161501973|ref|YP_258777.2| flagellar biosynthesis protein FliP [Pseudomonas fluorescens Pf-5] Length = 249 Score = 184 bits (466), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 90/201 (44%), Positives = 132/201 (65%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 I T LS P ++++T F R IIVFSILR +G+ P N ++ +ALF+T ++M+P D Sbjct: 50 IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFD 109 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 R + +QP + ++T A+ + P FM TR DL LFM ++ + TDI Sbjct: 110 RVNQDALQPYLAEKLTAQDAVAKAQVPIKDFMLAQTRSSDLELFMRLS----KRTDIASP 165 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D IL+P+F+ SEL+ +F+IGF+I +PFLIID++VA+++MAMGMMML P ISLPFK Sbjct: 166 DQAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK 225 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW+L++ L SF Sbjct: 226 IMLFVLVDGWALIIGTLAGSF 246 >gi|89899371|ref|YP_521842.1| flagellar biosynthesis protein FliP [Rhodoferax ferrireducens T118] gi|89344108|gb|ABD68311.1| flagellar biosynthetic protein FliP [Rhodoferax ferrireducens T118] Length = 260 Score = 184 bits (466), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 93/217 (42%), Positives = 141/217 (64%), Gaps = 5/217 (2%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P+ +S S I +T FT LS P +L+M+T F R +IV S++R +G S PPN VI+ Sbjct: 48 PSGVSFSVPI-QTLLFFTALSFLPAVLLMMTGFTRIVIVLSLMRQALGTQSAPPNQVIVG 106 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 L+LF+TF VM PTLD+ P N+ + A+ + +P FM TR+ DL+LF Sbjct: 107 LSLFLTFLVMGPTLDKVYSEAYLPYTNSGMPFEQALAKAEDPLRQFMSKQTRQSDLALFA 166 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 +A T T + R+L+P+F+ SEL+ +F+IGF+I +PFL+ID++VA+++M++ Sbjct: 167 KLAKLEPGATAQT----VPMRVLVPAFVTSELKSAFQIGFMIFIPFLVIDIVVASVLMSL 222 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 GMMML P ++LPFK++ FVL DGW+LL+ +L SF+ Sbjct: 223 GMMMLSPVLVALPFKLMLFVLADGWNLLIGSLAASFV 259 >gi|254457934|ref|ZP_05071361.1| flagellar biosynthetic protein FliP [Campylobacterales bacterium GD 1] gi|207085327|gb|EDZ62612.1| flagellar biosynthetic protein FliP [Campylobacterales bacterium GD 1] Length = 244 Score = 184 bits (466), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 92/193 (47%), Positives = 133/193 (68%), Gaps = 4/193 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +++++T F RF+IVF LR +G VPP +++ LA+ +TF+VM P ++ + GI Sbjct: 54 APSMVLVMTTFTRFVIVFGFLRQALGTQQVPPTQLLVMLAMILTFFVMEPIGQKAYDNGI 113 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 +P + +I A ++ PF FM NTREKDL+LF + + T + + Sbjct: 114 KPYIEEKIGYEEAFEKSTLPFKNFMIRNTREKDLALFFRIRGMENPAT----VSDVPLSV 169 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 +IPSF+ISEL+ +FEIGFL+ LPFL+IDM+VA+I+M+MGMMMLPP ISLPFK++ FVLI Sbjct: 170 IIPSFVISELKTAFEIGFLLFLPFLVIDMVVASILMSMGMMMLPPVMISLPFKILVFVLI 229 Query: 232 DGWSLLVENLVKS 244 DGWSLL+ NL+ + Sbjct: 230 DGWSLLIGNLIAT 242 >gi|307264883|ref|ZP_07546445.1| flagellar biosynthetic protein FliP [Thermoanaerobacter wiegelii Rt8.B1] gi|326389467|ref|ZP_08211034.1| flagellar biosynthetic protein FliP [Thermoanaerobacter ethanolicus JW 200] gi|306920141|gb|EFN50353.1| flagellar biosynthetic protein FliP [Thermoanaerobacter wiegelii Rt8.B1] gi|325994472|gb|EGD52897.1| flagellar biosynthetic protein FliP [Thermoanaerobacter ethanolicus JW 200] Length = 221 Score = 183 bits (465), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 90/194 (46%), Positives = 132/194 (68%), Gaps = 5/194 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +LIM+T F R ++V S LR +G+ +PPN V+I LALF+T Y+M+P I Sbjct: 32 APSILIMMTSFTRIVVVLSFLRNALGLQQMPPNQVLIGLALFLTLYIMAPVGQDINNNAI 91 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 +P +IT+ A Q +P FM TR+ DL+LF+ +A N + + R+ Sbjct: 92 KPYTEGKITQEEAYQNAIKPLKNFMLKQTRQSDLNLFVSLAKIKVNNAE-----DLPMRV 146 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 +IPSF+ISEL+ +FEIGF+I +PFLIID++VA+++M+MGM MLPP ISLPFKV+ F+L+ Sbjct: 147 VIPSFIISELKTAFEIGFIIYIPFLIIDIVVASVLMSMGMFMLPPVLISLPFKVLLFILV 206 Query: 232 DGWSLLVENLVKSF 245 DGW+L+V++L+ F Sbjct: 207 DGWNLVVKSLILGF 220 >gi|126463729|ref|YP_001044843.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides ATCC 17029] gi|126105393|gb|ABN78071.1| flagellar biosynthetic protein FliP [Rhodobacter sphaeroides ATCC 17029] Length = 238 Score = 183 bits (465), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 91/212 (42%), Positives = 135/212 (63%), Gaps = 5/212 (2%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 S++ V+ + T+LS+ P L +M+TCFP + V SILR +G+ PPN++I+SLALF Sbjct: 31 SLTARSVQLIAVITLLSLVPALAMMITCFPFIVTVLSILRQAIGLQQAPPNMLIVSLALF 90 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 +T+YVM P + GI PL N++ A+ A PF FM L+ A Sbjct: 91 LTWYVMDPVFTEAWTRGIGPLTRNELDLPQALAAAAVPFRGFMTGRIDPDTLA-----AL 145 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 + R + +L+PSF++SE++R+FEIGFLI LPFLIID++V+ ++M+MGMMM Sbjct: 146 QALRPGPAAPPSEASFSVLVPSFLLSEIQRAFEIGFLIYLPFLIIDLVVSAVLMSMGMMM 205 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PP +S+PFK+ FFV+ DGWSL+ LV+S+ Sbjct: 206 VPPAVVSMPFKLAFFVVADGWSLISGALVRSY 237 >gi|260776473|ref|ZP_05885368.1| flagellar biosynthesis protein FliP [Vibrio coralliilyticus ATCC BAA-450] gi|260607696|gb|EEX33961.1| flagellar biosynthesis protein FliP [Vibrio coralliilyticus ATCC BAA-450] Length = 244 Score = 183 bits (465), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 91/206 (44%), Positives = 136/206 (66%), Gaps = 5/206 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + T+L P ++I++T F R ++V SILR MG+ P N VII +A+F+TF++M Sbjct: 42 LQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIAIFLTFFIM 101 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP L+ + IQP +N QIT A P FM TR KDL F++++ S Sbjct: 102 SPVLNEINDKAIQPYINEQITARQAFDVAQAPMKDFMLKQTRVKDLETFVNISGS----- 156 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 D T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGMMML P + Sbjct: 157 DATAPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGMMMLSPMIV 216 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW+L++ L SF Sbjct: 217 SLPFKLMLFVLVDGWNLILSTLAGSF 242 >gi|304316893|ref|YP_003852038.1| flagellar biosynthetic protein FliP [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778395|gb|ADL68954.1| flagellar biosynthetic protein FliP [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 249 Score = 183 bits (465), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 93/194 (47%), Positives = 136/194 (70%), Gaps = 5/194 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +LIM+T F R I+V S LR +G+ +PPN V+I L+LF+TF++M+P + I Sbjct: 60 APSILIMMTSFTRIIVVLSFLRNALGLQQMPPNQVLIGLSLFLTFFIMAPVGVQINNDSI 119 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 QP M +IT A + +P FM TR+ DL+LF+++A ++ ND I R+ Sbjct: 120 QPYMQGKITPQVAYVKARDPLKNFMLKQTRKNDLNLFINLAKIKVKSV----ND-IPLRV 174 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 +IPSF+ISEL+ +FEIGF+I +PFLIIDM+VA+++M+MGM MLPP ISLPFK++ F+L+ Sbjct: 175 VIPSFIISELKTAFEIGFIIYIPFLIIDMVVASVLMSMGMFMLPPVLISLPFKLLLFILV 234 Query: 232 DGWSLLVENLVKSF 245 DGW++L ++LV F Sbjct: 235 DGWNILAKSLVIGF 248 >gi|30248477|ref|NP_840547.1| flagellar biosynthesis protein FliP [Nitrosomonas europaea ATCC 19718] gi|30138363|emb|CAD84372.1| Flagella transport protein FliP family [Nitrosomonas europaea ATCC 19718] Length = 268 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 87/193 (45%), Positives = 134/193 (69%), Gaps = 4/193 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +++M++ F R IIV S+LR MG S PPN V++ LALF++F++MSP +D+ Sbjct: 78 PAVILMMSSFTRIIIVLSLLRQAMGTQSSPPNQVLLGLALFLSFFIMSPVIDKVYTEAYL 137 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P ++I+ A+++ +P FM TRE D++LF +A N +I D + +IL Sbjct: 138 PFSEDKISIVEAMEKAGDPLKSFMLRQTREADIALFARIAE----NGEIESPDQVPMKIL 193 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 +P+++ SEL+ +F+IGF++ +PFLIIDM+VA+ +MAMGMMML P ISLPFK++ FVL+D Sbjct: 194 VPAYITSELKTAFQIGFVVFIPFLIIDMVVASTLMAMGMMMLSPMIISLPFKLMLFVLVD 253 Query: 233 GWSLLVENLVKSF 245 GW+LL+ +L +SF Sbjct: 254 GWNLLIGSLTQSF 266 >gi|251772432|gb|EES52999.1| flagellar biosynthetic protein FliP [Leptospirillum ferrodiazotrophum] Length = 272 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 91/194 (46%), Positives = 135/194 (69%), Gaps = 3/194 (1%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +L+M+T F R ++V S LR +G VPPN V++ L+LF+TF++M+P I Sbjct: 81 APAILVMMTSFTRIVVVLSFLRQALGTAQVPPNQVMVGLSLFLTFFIMAPVWQTMNRTAI 140 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 QP + +I A+ R P FM R+KDL++F +AH T +++D Y + Sbjct: 141 QPYLAKEIAPDVALTRGMAPVRDFMFRQVRKKDLAMFERIAHLP--ETPASRDDIPTY-V 197 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 LIP+F++SEL +FE+GFLI LPFLI+D++V++++M+MGMMMLPPT +SLPFK++ FVL+ Sbjct: 198 LIPAFVVSELSTAFEMGFLIYLPFLILDVVVSSVLMSMGMMMLPPTVVSLPFKILLFVLV 257 Query: 232 DGWSLLVENLVKSF 245 DGWSL+V +LV+SF Sbjct: 258 DGWSLIVGSLVQSF 271 >gi|299068762|emb|CBJ40002.1| fliP: flagellar biosynthesis protein. fliP/mopC/spaP family [Ralstonia solanacearum CMR15] Length = 249 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 95/206 (46%), Positives = 134/206 (65%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T T L P +L+M++ F R IIV S+LR +G + PPN V+I LALF+TF+VM Sbjct: 46 VQTLVFLTSLGFLPAILLMMSSFTRIIIVLSLLRHALGTQTTPPNQVLIGLALFLTFFVM 105 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP LD+ PL +++I+ A+ A P FM TRE DL+LF M + Sbjct: 106 SPVLDKVYTDAYLPLRDSKISVEQALDTAATPLRQFMLKQTREPDLALFAKMGNLP---- 161 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 I D + R LIP+F+ SEL+ SF+IGF I +PFL+ID++VA ++M+MGMMM+ P+ Sbjct: 162 PIASPDQVPMRALIPAFVTSELKTSFQIGFAIFIPFLVIDIVVAAVLMSMGMMMVTPSIF 221 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 222 SLPFKIMLFVLVDGWHLLLGSLAQSF 247 >gi|66046673|ref|YP_236514.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. syringae B728a] gi|289678972|ref|ZP_06499862.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. syringae FF5] gi|63257380|gb|AAY38476.1| Flagellar transport protein FliP [Pseudomonas syringae pv. syringae B728a] gi|330899441|gb|EGH30860.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. japonica str. M301072PT] gi|330976008|gb|EGH76074.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 250 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 91/201 (45%), Positives = 133/201 (66%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 I T LS P ++++T F R IIVFSILR +G+ P N ++ +ALF+T ++M+P D Sbjct: 51 IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQAPSNQILTGMALFLTMFIMAPVFD 110 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 R + +QP + +++ A+ + P FM TR DL LFM ++ + TDI Sbjct: 111 RVNQDALQPYLAEKLSAQDAVAKAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTP 166 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D IL+P+F+ISEL+ +F+IGF+I +PFLIID++VA+++MAMGMMML P ISLPFK Sbjct: 167 DAAPLTILVPAFVISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK 226 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW+L+V L SF Sbjct: 227 IMLFVLVDGWALIVGTLAGSF 247 >gi|254506844|ref|ZP_05118983.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus 16] gi|219550129|gb|EED27115.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus 16] Length = 244 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 89/206 (43%), Positives = 138/206 (66%), Gaps = 5/206 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + T+L P ++I++T F R ++V SILR MG+ P N VII +A+F+TF++M Sbjct: 42 LQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIAIFLTFFIM 101 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP L++ ++ +QP +N QIT A P FM TR KDL F++++ S+ Sbjct: 102 SPVLNKINDVAVQPYINEQITAREAFDLAQAPMKDFMLKQTRVKDLETFVNISGSTA--- 158 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGMMML P + Sbjct: 159 --TAPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGMMMLSPMIV 216 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW+L++ L SF Sbjct: 217 SLPFKLMLFVLVDGWNLILSTLAGSF 242 >gi|238782830|ref|ZP_04626859.1| Flagellar biosynthetic protein fliP [Yersinia bercovieri ATCC 43970] gi|238716253|gb|EEQ08236.1| Flagellar biosynthetic protein fliP [Yersinia bercovieri ATCC 43970] Length = 257 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 100/238 (42%), Positives = 158/238 (66%), Gaps = 13/238 (5%) Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67 +++ +L+ A+S+ + ++P V+T + T L+ P +L+M+T F R II Sbjct: 31 SVWAANADLMVARSADGENWSLP---------VQTLVLLTSLTFLPAILLMMTGFTRIII 81 Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127 V +LR +G S PPN V+++LALF+TFYVMSP ++ + QPL ++I+ TA++R Sbjct: 82 VLGLLRNALGTPSTPPNQVLLALALFLTFYVMSPVFNQIYKEAWQPLSEDKISMETALER 141 Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187 +P VFM TRE DL+L+ MA + + D + R+L+P+F+ SEL+ F+I Sbjct: 142 GVQPLRVFMLEQTRESDLALYARMA----KEENFQSKDDVPLRVLLPAFVTSELKTGFQI 197 Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GF + +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 198 GFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLMGSLAQSF 255 >gi|238764402|ref|ZP_04625352.1| Flagellar biosynthetic protein fliP [Yersinia kristensenii ATCC 33638] gi|238697428|gb|EEP90195.1| Flagellar biosynthetic protein fliP [Yersinia kristensenii ATCC 33638] Length = 243 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 94/229 (41%), Positives = 147/229 (64%), Gaps = 6/229 (2%) Query: 19 AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 A + L +++ P +W V+T T LS P L+M+T F R IIV +LR + Sbjct: 17 ALAQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLLRNAL 76 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G S PPN V++ LALF+TF++MSP D+ + P ++I+ A+ + ++P FM Sbjct: 77 GTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAMDKGSQPLREFM 136 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 TRE DL+L+ +A+ + + + RIL+P+++ SEL+ +F+IGF + +PFL Sbjct: 137 LRQTRESDLALYARLANLPP----LEGPEVVPMRILLPAYVTSELKTAFQIGFTVFIPFL 192 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IID++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 193 IIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 241 >gi|169827136|ref|YP_001697294.1| flagellar biosynthesis protein FliP [Lysinibacillus sphaericus C3-41] gi|168991624|gb|ACA39164.1| Flagellar biosynthetic protein [Lysinibacillus sphaericus C3-41] Length = 221 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 89/194 (45%), Positives = 135/194 (69%), Gaps = 4/194 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +LI++T F R +IV S +RT + +PPN VI+ LALF+TF++M+PT + + Sbjct: 32 APSILILMTSFARIVIVLSFVRTALATQQMPPNQVIVGLALFLTFFIMAPTFQEVNKEAL 91 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 QPL + +I A R + PF FM +TR+KDL LF+ S ++ + I + Sbjct: 92 QPLFSEEIGLEEAYDRASLPFKEFMSKHTRQKDLDLFL----SYNQAEKPASVEEIPLTM 147 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 L+P+F +SE++ +F+IGF+I +PFL+IDMIVA+ +M+MGMMMLPP ISLPFK++ FVL+ Sbjct: 148 LVPAFALSEIKTAFQIGFMIFIPFLVIDMIVASTLMSMGMMMLPPVMISLPFKILLFVLV 207 Query: 232 DGWSLLVENLVKSF 245 DGW L++++L++SF Sbjct: 208 DGWYLVMKSLLQSF 221 >gi|226941268|ref|YP_002796342.1| flagellar biosynthesis protein FliP [Laribacter hongkongensis HLHK9] gi|226716195|gb|ACO75333.1| FliP [Laribacter hongkongensis HLHK9] Length = 251 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 89/199 (44%), Positives = 138/199 (69%), Gaps = 4/199 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T L+ P LL+M+T F R +IV S+LR +G+ PPN VI+ L+LF+T +VM+P D++ Sbjct: 54 TSLTFIPALLLMMTAFTRIVIVLSLLRQAIGLMQSPPNQVIVGLSLFLTLFVMAPVFDQA 113 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 P ++Q+ A ++ +PF FM TREKDL+ F+++A + T Sbjct: 114 YREAWLPYSDSQMNFMQAAEKGVQPFKGFMLKQTREKDLAFFVEIAREAPPATP----AD 169 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 + + LIP+F++SEL+ +F+IGF++ +PFLIID++VA+++MAMGMMM+ P ISLPFK++ Sbjct: 170 VSLKTLIPAFVVSELKTAFQIGFMVFIPFLIIDLVVASVLMAMGMMMVSPVIISLPFKLM 229 Query: 227 FFVLIDGWSLLVENLVKSF 245 FVL+DGW+LL+ +LV+SF Sbjct: 230 LFVLVDGWTLLIGSLVQSF 248 >gi|207728358|ref|YP_002256752.1| flagellar biosynthetic protein flip [Ralstonia solanacearum MolK2] gi|206591604|emb|CAQ57216.1| flagellar biosynthetic protein flip [Ralstonia solanacearum MolK2] Length = 252 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 95/206 (46%), Positives = 134/206 (65%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T T L P +L+M++ F R IIV S+LR +G + PPN V+I LALF+TF+VM Sbjct: 49 VQTLVFLTSLGFLPAILLMMSSFTRIIIVLSLLRHALGTQTTPPNQVLIGLALFLTFFVM 108 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP LD+ PL +++I+ A+ A P FM TRE DL+LF M + Sbjct: 109 SPVLDKVYTDAYVPLRDSKISVEQALDTAATPLRQFMLKQTREPDLALFAKMGNLP---- 164 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 I D + R LIP+F+ SEL+ SF+IGF I +PFL+ID++VA ++M+MGMMM+ P+ Sbjct: 165 PIASPDQVPMRALIPAFVTSELKTSFQIGFAIFIPFLVIDIVVAAVLMSMGMMMVTPSIF 224 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 225 SLPFKIMLFVLVDGWHLLLGSLAQSF 250 >gi|119476307|ref|ZP_01616658.1| flagellar biosynthesis protein [marine gamma proteobacterium HTCC2143] gi|119450171|gb|EAW31406.1| flagellar biosynthesis protein [marine gamma proteobacterium HTCC2143] Length = 270 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 87/209 (41%), Positives = 141/209 (67%), Gaps = 4/209 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 T ++ + T+L++ P L+M+T F R I+V +ILR +G+ S P N +I+ LA+F+T Sbjct: 64 TVTIQILAVMTVLTLLPSFLMMMTAFTRVIVVLAILRQAIGLQSTPSNQIILGLAIFLTI 123 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 ++M P +++ +QP MN +IT AI ++PF FM + TRE DL LFM ++++ Sbjct: 124 FIMLPVFEQANTQALQPYMNEKITSLEAIDAASKPFHEFMLSQTRETDLDLFMRISNT-- 181 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 T I + + +L P+F+ SEL+ +F++GF++ +PFL+ID++VA+++MAMGMMML P Sbjct: 182 --TGIQTPEETPFFVLAPAFLTSELKTAFQMGFVLFIPFLVIDLVVASVLMAMGMMMLSP 239 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLPFK++ FVL+DGW ++V L S+ Sbjct: 240 IIISLPFKIMLFVLVDGWVMIVGTLAASY 268 >gi|220929452|ref|YP_002506361.1| flagellar biosynthesis protein FliP [Clostridium cellulolyticum H10] gi|219999780|gb|ACL76381.1| flagellar biosynthetic protein FliP [Clostridium cellulolyticum H10] Length = 266 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 98/206 (47%), Positives = 137/206 (66%), Gaps = 9/206 (4%) Query: 46 FTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDR 105 T+L+IAP +LIM+T F R II+ S LR +G +PPN V+I LALF+T +VMSP L Sbjct: 62 LTVLAIAPSILIMMTGFTRIIIILSFLRNALGTQQMPPNQVLIGLALFITLFVMSPVLSD 121 Query: 106 SIEMGIQPLMNNQITETTAIQRVAEPFWVFMR----NNTREKDLSLFMDMAHSSH--RNT 159 E QP + +IT+ AI + ++ +M +N REKDL LFM + R Sbjct: 122 INENAFQPYSDGKITQQQAIDKSSQTIKTWMVKQIFSNNREKDLELFMTLGGQKDPIRVQ 181 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 D +K + I+ P+F+ISEL +F+ GFLI LPFLIIDM+V++ +M+MGMMMLPP I Sbjct: 182 DASK---LSLTIVAPAFLISELTIAFKFGFLIFLPFLIIDMVVSSALMSMGMMMLPPIMI 238 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGWS+L ++++ SF Sbjct: 239 SLPFKILLFVLVDGWSMLTQSIITSF 264 >gi|15895419|ref|NP_348768.1| flagellar biosynthesis protein FliP [Clostridium acetobutylicum ATCC 824] gi|15025142|gb|AAK80108.1|AE007715_13 Flagellar biosynthesis protein FliP [Clostridium acetobutylicum ATCC 824] gi|325509565|gb|ADZ21201.1| flagellar biosynthesis protein FliP [Clostridium acetobutylicum EA 2018] Length = 261 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 89/193 (46%), Positives = 136/193 (70%), Gaps = 4/193 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +++M+T F R I+V LRT MG PPN V+I LALF+T ++M PT + + IQ Sbjct: 71 PSIIMMMTSFTRIIVVLGFLRTSMGTQQSPPNQVLIGLALFLTMFIMMPTYKQINKNAIQ 130 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P +N I++ A+ + +P FM T +KDL LF+D+ + S + ITK D + + + Sbjct: 131 PYLNKSISQQQALLEMEKPLRTFMYKQTYQKDLKLFIDLDNQSGK---ITK-DTVPFHDI 186 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 +P+F+ISEL+ +F IGFL+ +PFLIID++VA+I+M+MGMMMLPP +S+PFK++ F+++D Sbjct: 187 VPAFIISELKTAFTIGFLLYIPFLIIDLVVASILMSMGMMMLPPVMVSMPFKLLLFIMVD 246 Query: 233 GWSLLVENLVKSF 245 GW L+V++LV SF Sbjct: 247 GWYLIVKSLVLSF 259 >gi|83747643|ref|ZP_00944679.1| FliP [Ralstonia solanacearum UW551] gi|207739724|ref|YP_002258117.1| flagellar biosynthetic protein flip [Ralstonia solanacearum IPO1609] gi|83725695|gb|EAP72837.1| FliP [Ralstonia solanacearum UW551] gi|206593106|emb|CAQ60012.1| flagellar biosynthetic protein flip [Ralstonia solanacearum IPO1609] Length = 249 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 95/206 (46%), Positives = 134/206 (65%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T T L P +L+M++ F R IIV S+LR +G + PPN V+I LALF+TF+VM Sbjct: 46 VQTLVFLTSLGFLPAILLMMSSFTRIIIVLSLLRHALGTQTTPPNQVLIGLALFLTFFVM 105 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP LD+ PL +++I+ A+ A P FM TRE DL+LF M + Sbjct: 106 SPVLDKVYTDAYVPLRDSKISVEQALDTAATPLRQFMLKQTREPDLALFAKMGNLP---- 161 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 I D + R LIP+F+ SEL+ SF+IGF I +PFL+ID++VA ++M+MGMMM+ P+ Sbjct: 162 PIASPDQVPMRALIPAFVTSELKTSFQIGFAIFIPFLVIDIVVAAVLMSMGMMMVTPSIF 221 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 222 SLPFKIMLFVLVDGWHLLLGSLAQSF 247 >gi|300696945|ref|YP_003747606.1| fliP: flagellar biosynthesis protein. fliP/mopC/spaP family [Ralstonia solanacearum CFBP2957] gi|299073669|emb|CBJ53189.1| fliP: flagellar biosynthesis protein. fliP/mopC/spaP family [Ralstonia solanacearum CFBP2957] Length = 249 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 95/206 (46%), Positives = 134/206 (65%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T T L P +L+M++ F R IIV S+LR +G + PPN V+I LALF+TF+VM Sbjct: 46 VQTLVFLTSLGFLPAILLMMSSFTRIIIVLSLLRHALGTQTTPPNQVLIGLALFLTFFVM 105 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP LD+ PL +++I+ A+ A P FM TRE DL+LF M + Sbjct: 106 SPVLDKVYTDAYVPLRDSKISVEQALDTAATPLRQFMLKQTREPDLALFAKMGNLP---- 161 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 I D + R LIP+F+ SEL+ SF+IGF I +PFL+ID++VA ++M+MGMMM+ P+ Sbjct: 162 PIASPDQVPMRALIPAFVTSELKTSFQIGFAIFIPFLVIDIVVAAVLMSMGMMMVTPSIF 221 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 222 SLPFKIMLFVLVDGWHLLLGSLAQSF 247 >gi|237799248|ref|ZP_04587709.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022103|gb|EGI02160.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. oryzae str. 1_6] Length = 250 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 103/245 (42%), Positives = 152/245 (62%), Gaps = 17/245 (6%) Query: 9 LFLVTPELVFAKSSLHDVMNIPA-DLSISTWIVRTFG-------IFTILSIAPILLIMVT 60 L +V P ++ A D ++IPA LS ST + + I T LS P ++++T Sbjct: 12 LVMVAPAVLAA-----DPLSIPAITLSNSTDGQQEYSVSLQILLIMTALSFIPAFVMLMT 66 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R IIVFSILR +G+ P N ++ +ALF+T ++M+P DR + +QP + +++ Sbjct: 67 SFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKLS 126 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A+ + P FM TR DL LFM ++ + TDI D IL+P+F+ISE Sbjct: 127 AQDAVAKAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTPDAAPLTILVPAFVISE 182 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +F+IGF+I +PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW+L+V Sbjct: 183 LKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIVGT 242 Query: 241 LVKSF 245 L SF Sbjct: 243 LAGSF 247 >gi|241763645|ref|ZP_04761695.1| flagellar biosynthetic protein FliP [Acidovorax delafieldii 2AN] gi|241367120|gb|EER61486.1| flagellar biosynthetic protein FliP [Acidovorax delafieldii 2AN] Length = 263 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 91/207 (43%), Positives = 138/207 (66%), Gaps = 4/207 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++T FT LS P +L+M+T F R +IV S+LR +G S PPN VII L+LF+TF+VM Sbjct: 60 IQTLLFFTALSFLPAVLLMMTGFTRIVIVLSLLRQALGTQSAPPNQVIIGLSLFLTFFVM 119 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 PTLD+ + P N I+ A+++ P FM TR+ D +LF +A + Sbjct: 120 GPTLDKVYQDAYLPYTTNTISFEAALEKAEAPMRSFMLKQTRQSDFALFSRLAK---LDV 176 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 +T + R+L+P+F+ SEL+ +F+IGF+I +PFL+IDM+V++I+M++GMMML P + Sbjct: 177 SVTA-ETAPLRVLVPAFVTSELKSAFQIGFMIFIPFLVIDMVVSSILMSLGMMMLSPVLV 235 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246 +LPFK++ FVL DGW+LL+ +L SF+ Sbjct: 236 ALPFKLMLFVLADGWNLLIGSLAASFV 262 >gi|330953762|gb|EGH54022.1| flagellar biosynthesis protein FliP [Pseudomonas syringae Cit 7] Length = 250 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 91/201 (45%), Positives = 133/201 (66%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 I T LS P ++++T F R IIVFSILR +G+ P N ++ +ALF+T ++M+P D Sbjct: 51 IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFD 110 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 R + +QP + +++ A+ + P FM TR DL LFM ++ + TDI Sbjct: 111 RVNQDALQPYLAEKLSAQDAVAKAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTP 166 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D IL+P+F+ISEL+ +F+IGF+I +PFLIID++VA+++MAMGMMML P ISLPFK Sbjct: 167 DAAPLTILVPAFVISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK 226 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW+L+V L SF Sbjct: 227 IMLFVLVDGWALIVGTLAGSF 247 >gi|126653733|ref|ZP_01725651.1| flagellar biosynthesis protein P [Bacillus sp. B14905] gi|126589697|gb|EAZ83833.1| flagellar biosynthesis protein P [Bacillus sp. B14905] Length = 221 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 89/194 (45%), Positives = 135/194 (69%), Gaps = 4/194 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +LI++T F R +IV S +RT + +PPN VI+ LALF+TF++M+PT + + Sbjct: 32 APSILILMTSFARIVIVLSFVRTALATQQMPPNQVIVGLALFLTFFIMAPTFQEVNKEAL 91 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 QPL + +I A R + PF FM +TR+KDL LF+ S ++ + I + Sbjct: 92 QPLFSEEIGLDEAYDRASLPFKEFMSKHTRQKDLDLFL----SYNQAEKPASVEEIPLTM 147 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 L+P+F +SE++ +F+IGF+I +PFL+IDMIVA+ +M+MGMMMLPP ISLPFK++ FVL+ Sbjct: 148 LVPAFALSEIKTAFQIGFMIFIPFLVIDMIVASTLMSMGMMMLPPVMISLPFKILLFVLV 207 Query: 232 DGWSLLVENLVKSF 245 DGW L++++L++SF Sbjct: 208 DGWYLVMKSLLQSF 221 >gi|302185375|ref|ZP_07262048.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. syringae 642] Length = 250 Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 91/201 (45%), Positives = 133/201 (66%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 I T LS P ++++T F R IIVFSILR +G+ P N ++ +ALF+T ++M+P D Sbjct: 51 IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFD 110 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 R + +QP + +++ A+ + P FM TR DL LFM ++ + TDI Sbjct: 111 RVNQDALQPYLAEKLSAQDAVAKAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTP 166 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D IL+P+F+ISEL+ +F+IGF+I +PFLIID++VA+++MAMGMMML P ISLPFK Sbjct: 167 DAAPLTILVPAFVISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK 226 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW+L+V L SF Sbjct: 227 IMLFVLVDGWALIVGTLAGSF 247 >gi|160896097|ref|YP_001561679.1| flagellar biosynthesis protein FliP [Delftia acidovorans SPH-1] gi|160361681|gb|ABX33294.1| flagellar biosynthetic protein FliP [Delftia acidovorans SPH-1] Length = 261 Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 91/206 (44%), Positives = 135/206 (65%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++T FT LS P +L+M+T F R +IV S++R +G S PPN VII L+LF+T +VM Sbjct: 58 IQTLLFFTALSFLPAILLMMTGFTRIVIVLSLMRQALGTQSAPPNQVIIGLSLFLTLFVM 117 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 PTLDR + P N +T AI++ P FM TR+ D +LF +A T Sbjct: 118 GPTLDRVYQEAYVPYTTNAVTFEQAIEKAEAPMRDFMLKQTRQSDFALFARLAKLDAGVT 177 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 ++ R+L+P+F+ SEL+ +F+IGF+I +PFL+IDM+V++I+M++GMMML P + Sbjct: 178 ----SETAPLRVLVPAFVTSELKTAFQIGFMIFIPFLVIDMVVSSILMSLGMMMLSPVLV 233 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 +LPFK++ FVL DGW+LL+ +L SF Sbjct: 234 ALPFKLMLFVLADGWNLLIGSLAASF 259 >gi|91776320|ref|YP_546076.1| flagellar biosynthesis protein FliP [Methylobacillus flagellatus KT] gi|91710307|gb|ABE50235.1| flagellar biosynthetic protein FliP [Methylobacillus flagellatus KT] Length = 250 Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 97/214 (45%), Positives = 137/214 (64%), Gaps = 9/214 (4%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 LSI T I + T L+ P L+M+T F R IIV S+LR +G S PPN V++ LA Sbjct: 45 SLSIQTLI-----LLTSLTFLPAALLMMTGFTRIIIVLSLLRQALGTQSSPPNQVLVGLA 99 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 LF+TF+VM P +R QP +IT A+ R + P FM TRE DL+LF M Sbjct: 100 LFLTFFVMGPVFERIYTEAYQPFDEERITMQEAMVRGSIPLKEFMLKQTRESDLALFFKM 159 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + R + + + R+L+P+F+ SEL+ +F+IGF I +PFLIIDM+VA+I+M+MGM Sbjct: 160 S----RADAVATPEEVPLRVLVPAFVTSELKTAFQIGFAIFIPFLIIDMVVASILMSMGM 215 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MM+ P ++LPFK++ FVL+DGW LL+ +L +SF Sbjct: 216 MMVSPAIVALPFKLMLFVLVDGWQLLLGSLAQSF 249 >gi|77457776|ref|YP_347281.1| flagellar biosynthesis protein FliP [Pseudomonas fluorescens Pf0-1] gi|77381779|gb|ABA73292.1| flagellar biosynthesis protein [Pseudomonas fluorescens Pf0-1] Length = 252 Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 90/201 (44%), Positives = 132/201 (65%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 I T LS P +I++T F R IIVFSILR +G+ P N ++ +ALF+T ++M+P D Sbjct: 51 IMTALSFIPAAVILMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTLFIMAPVFD 110 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 R +QP + ++T A+++ P FM TR DL LF+ ++ + TDI Sbjct: 111 RVNNDALQPYLAEKLTAQQAVEKAQVPIKDFMLAQTRSSDLELFVRLS----KRTDIATP 166 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D IL+P+F+ SEL+ +F+IGF+I +PFLIID++VA+++MAMGMMML P ISLPFK Sbjct: 167 DAAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK 226 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW+L++ L SF Sbjct: 227 IMLFVLVDGWALIIGTLASSF 247 >gi|85710189|ref|ZP_01041254.1| Flagellar transport protein FliP [Erythrobacter sp. NAP1] gi|85688899|gb|EAQ28903.1| Flagellar transport protein FliP [Erythrobacter sp. NAP1] Length = 243 Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 90/201 (44%), Positives = 134/201 (66%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + ++L+I P +++M+T F R +IV SILR +G+ PP V++ L+LF++ +VM+PTLD Sbjct: 46 VISLLTILPAIVLMMTSFLRILIVLSILRQALGLQGSPPTQVLVGLSLFLSLFVMAPTLD 105 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 E+ I+P I AI E F FM TRE +L +F D+A Sbjct: 106 TVSELAIEPYSAGTIGADAAIASAGEAFHTFMLRQTREANLVMFADIAGIGA----FADA 161 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D I + IL+P+F+ SEL +F+IGF++ LPFL+ID++VA+++M++GMMML PT ISLPFK Sbjct: 162 DAIPFSILLPAFVTSELETAFQIGFMLFLPFLVIDLVVASVLMSLGMMMLSPTIISLPFK 221 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGWSLL+ +L SF Sbjct: 222 LLLFVLVDGWSLLMGSLAMSF 242 >gi|187926923|ref|YP_001893268.1| flagellar biosynthetic protein FliP [Ralstonia pickettii 12J] gi|241665252|ref|YP_002983611.1| flagellar biosynthesis protein FliP [Ralstonia pickettii 12D] gi|187728677|gb|ACD29841.1| flagellar biosynthetic protein FliP [Ralstonia pickettii 12J] gi|240867279|gb|ACS64939.1| flagellar biosynthetic protein FliP [Ralstonia pickettii 12D] Length = 249 Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 95/210 (45%), Positives = 136/210 (64%), Gaps = 4/210 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 T V+T T L P +++M++ F R IIV S+LR +G + PPN V+I LALF+TF Sbjct: 43 TLPVQTLIFLTSLGFLPAIILMMSSFTRIIIVLSLLRHALGTQTTPPNQVLIGLALFLTF 102 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 +VMSP LD+ PL +N+IT A+ A P FM TRE DL+LF+ M + Sbjct: 103 FVMSPVLDKVYTDAYVPLRDNKITVEQAMDTAATPLRQFMLKQTREPDLALFVKMGNMPA 162 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 I + R LIP+F+ SEL+ +F+IGF I +PFL+ID++VA ++M+MGMMM+ P Sbjct: 163 ----IASPEQTPMRALIPAFVTSELKSAFQIGFAIFIPFLVIDIVVAAVLMSMGMMMVTP 218 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 + SLPFK++ FVL+DGW LL+ +L +SF+ Sbjct: 219 SIFSLPFKIMLFVLVDGWHLLLGSLAQSFV 248 >gi|83815985|ref|YP_446686.1| flagellar biosynthesis protein FliP [Salinibacter ruber DSM 13855] gi|83757379|gb|ABC45492.1| flagellar biosynthetic protein FliP [Salinibacter ruber DSM 13855] Length = 279 Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 88/194 (45%), Positives = 134/194 (69%), Gaps = 4/194 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP ++I++T F R ++VFSILR +G+ PP V+I L+LF++ ++M P L+ + + Sbjct: 87 APAIIILMTSFTRLVVVFSILRRALGLQRSPPRQVVIGLSLFLSLFIMQPVLETVHQDAL 146 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 +P ++N+IT+ A R + P FM +TR+KDL LFMDM D + Sbjct: 147 RPYLDNEITQQEAFDRASTPMKRFMLTHTRDKDLMLFMDMGEIES----FEGPDEAPLYV 202 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 ++P+F+ISELR +F+IGF+I LPFLI+D++VA+I+M+MGMMMLPP ISLP K++ FVL Sbjct: 203 VVPAFVISELRIAFQIGFMIFLPFLIVDLVVASILMSMGMMMLPPVMISLPIKLLLFVLT 262 Query: 232 DGWSLLVENLVKSF 245 DGW L+VE+L++ + Sbjct: 263 DGWYLIVESLMQGY 276 >gi|323496545|ref|ZP_08101599.1| flagellar biosynthesis protein FliP [Vibrio sinaloensis DSM 21326] gi|323318389|gb|EGA71346.1| flagellar biosynthesis protein FliP [Vibrio sinaloensis DSM 21326] Length = 291 Score = 182 bits (463), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 92/214 (42%), Positives = 141/214 (65%), Gaps = 8/214 (3%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D SI+ I+ + T+L P ++I++T F R ++V SILR MG+ P N VII +A Sbjct: 84 DYSINLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 140 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 +F+TF++MSP L++ E +QP +N QI+ A P FM TR KDL F+++ Sbjct: 141 IFLTFFIMSPVLNKINEAAVQPYINEQISAREAFDLAQAPMKDFMLKQTRVKDLETFVNI 200 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + ++ N + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM Sbjct: 201 SGATVNNPE-----DVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 255 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 256 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 289 >gi|330880585|gb|EGH14734.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. glycinea str. race 4] Length = 226 Score = 182 bits (463), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 91/201 (45%), Positives = 133/201 (66%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 I T LS P ++++T F R IIVFSILR +G+ P N ++ +ALF+T ++M+P D Sbjct: 27 IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFD 86 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 R + +QP + +++ A+ + P FM TR DL LFM ++ + TDI Sbjct: 87 RVNQDALQPYLAEKLSAQDAVAKAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTP 142 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D IL+P+F+ISEL+ +F+IGF+I +PFLIID++VA+++MAMGMMML P ISLPFK Sbjct: 143 DAAPLTILVPAFVISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK 202 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW+L+V L SF Sbjct: 203 IMLFVLVDGWALIVGTLAGSF 223 >gi|332161332|ref|YP_004297909.1| flagellar biosynthesis protein FliP [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318605253|emb|CBY26751.1| flagellar biosynthesis protein FliP [Yersinia enterocolitica subsp. palearctica Y11] gi|325665562|gb|ADZ42206.1| flagellar biosynthesis protein FliP [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 250 Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 93/227 (40%), Positives = 146/227 (64%), Gaps = 6/227 (2%) Query: 21 SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 + L +++ P +W V+T T LS P L+M+T F R IIV +LR +G Sbjct: 26 AQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLLRNALGT 85 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 S PPN V++ LALF+TF++MSP D+ + P ++I+ A+ + ++P FM Sbjct: 86 PSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAMDKGSQPLREFMLR 145 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 TRE DL+L+ +A+ + + + RIL+P+++ SEL+ +F+IGF + +PFLII Sbjct: 146 QTRESDLALYARLANLPP----LEGPEVVPLRILLPAYVTSELKTAFQIGFTVFIPFLII 201 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 D++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 202 DLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 248 >gi|294508622|ref|YP_003572681.1| flagellar biosynthetic protein FliP [Salinibacter ruber M8] gi|294344951|emb|CBH25729.1| flagellar biosynthetic protein FliP [Salinibacter ruber M8] Length = 284 Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 88/194 (45%), Positives = 134/194 (69%), Gaps = 4/194 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP ++I++T F R ++VFSILR +G+ PP V+I L+LF++ ++M P L+ + + Sbjct: 92 APAIIILMTSFTRLVVVFSILRRALGLQRSPPRQVVIGLSLFLSLFIMQPVLETVHQDAL 151 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 +P ++N+IT+ A R + P FM +TR+KDL LFMDM D + Sbjct: 152 RPYLDNEITQQEAFDRASTPMKRFMLTHTRDKDLMLFMDMGEIE----SFEGPDEAPLYV 207 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 ++P+F+ISELR +F+IGF+I LPFLI+D++VA+I+M+MGMMMLPP ISLP K++ FVL Sbjct: 208 VVPAFVISELRIAFQIGFMIFLPFLIVDLVVASILMSMGMMMLPPVMISLPIKLLLFVLT 267 Query: 232 DGWSLLVENLVKSF 245 DGW L+VE+L++ + Sbjct: 268 DGWYLIVESLMQGY 281 >gi|90406809|ref|ZP_01215001.1| flagellar biosynthesis protein [Psychromonas sp. CNPT3] gi|90312046|gb|EAS40139.1| flagellar biosynthesis protein [Psychromonas sp. CNPT3] Length = 249 Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 88/206 (42%), Positives = 137/206 (66%), Gaps = 5/206 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ T LS P +L+++T F R ++V SILR +G+ P N VI +ALF+TF++M Sbjct: 46 LQVLAFMTALSFLPAMLVLMTSFTRIVVVMSILRQALGLQQTPSNQVINGIALFLTFFIM 105 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +P D+ E +QP +N + AI++ +P FM TR KDL F+++A N Sbjct: 106 TPVFDKINEEALQPYLNEDMNIVQAIEQGKKPLMAFMLAQTRLKDLETFLEIA-----NV 160 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + + +LIP+F+ SEL+ +F+IGF+I +PFLIID++VA+I+MAMGMMML P + Sbjct: 161 QVDTPEEVPFTVLIPAFVTSELKTAFQIGFMIFIPFLIIDLVVASILMAMGMMMLSPMIV 220 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW+L++ +L SF Sbjct: 221 SLPFKLMLFVLVDGWNLIMGSLANSF 246 >gi|78777215|ref|YP_393530.1| flagellar biosynthesis protein FliP [Sulfurimonas denitrificans DSM 1251] gi|78497755|gb|ABB44295.1| Flagellar transport protein FliP [Sulfurimonas denitrificans DSM 1251] Length = 246 Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 91/193 (47%), Positives = 133/193 (68%), Gaps = 4/193 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +++++T F RF+IVF LR +G VPP +++ L + +TF+VM P ++ E GI Sbjct: 56 APSMVLVMTTFTRFVIVFGFLRQALGTQQVPPTQLLVMLGMILTFFVMEPVGIKAYEDGI 115 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 +P + +I A + A PF FM NTREKDL+LF + + + T + I Sbjct: 116 KPYIEEKIGYEEAFDKTALPFKNFMIRNTREKDLALFFRI----RKMQNPTTIAEVPLSI 171 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 +IP+F+ISEL+ +FEIGFL+ LPFL+IDM+VA+I+M+MGMMMLPP I+LPFK++ F+LI Sbjct: 172 IIPAFVISELKTAFEIGFLLFLPFLVIDMVVASILMSMGMMMLPPVMIALPFKILIFILI 231 Query: 232 DGWSLLVENLVKS 244 DGW+LL+ NL+ S Sbjct: 232 DGWNLLIGNLIAS 244 >gi|224826623|ref|ZP_03699724.1| flagellar biosynthetic protein FliP [Lutiella nitroferrum 2002] gi|224601224|gb|EEG07406.1| flagellar biosynthetic protein FliP [Lutiella nitroferrum 2002] Length = 248 Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 93/199 (46%), Positives = 134/199 (67%), Gaps = 4/199 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T LS P LL+M+T F R IIV S+LR MG PPN V++ LALF+T +VM PT D+ Sbjct: 51 TALSFIPALLLMMTSFTRIIIVLSLLRQAMGTMQAPPNQVLVGLALFLTLFVMGPTFDQV 110 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 P ++I ++ ++P FM TREKDL+ F++++ S T Sbjct: 111 YSKAWVPFSEDKIGFAQMLEEGSKPMREFMLKQTREKDLAFFIEVSQSPAPPTP----AE 166 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 + + LIP+F+ISEL+ +F+IGF++ +PFLIID++VA+I+MAMGMMM+ P ISLPFK++ Sbjct: 167 VSMKTLIPAFVISELKTAFQIGFMVFIPFLIIDLVVASILMAMGMMMVSPVIISLPFKLM 226 Query: 227 FFVLIDGWSLLVENLVKSF 245 FVL+DGW+LL+ +LV+SF Sbjct: 227 LFVLVDGWTLLMGSLVRSF 245 >gi|17548596|ref|NP_521936.1| flagellar biosynthesis protein FliP [Ralstonia solanacearum GMI1000] gi|17430844|emb|CAD17526.1| probable flagellar biosynthetic flip transmembrane protein [Ralstonia solanacearum GMI1000] Length = 249 Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 94/206 (45%), Positives = 134/206 (65%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T T L P +L+M++ F R IIV S+LR +G + PPN V+I LALF+TF+VM Sbjct: 46 VQTLVFLTSLGFLPAILLMMSSFTRIIIVLSLLRHALGTQTTPPNQVLIGLALFLTFFVM 105 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP LD+ PL +++I+ A+ A P FM TRE DL+LF M + Sbjct: 106 SPVLDKVYTDAYLPLRDSKISVEQALDTAATPLRQFMLKQTREPDLALFAKMGNLP---- 161 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 I D + R LIP+F+ SEL+ +F+IGF I +PFL+ID++VA ++M+MGMMM+ P+ Sbjct: 162 PIASPDQVPMRALIPAFVTSELKTAFQIGFAIFIPFLVIDIVVAAVLMSMGMMMVTPSIF 221 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 222 SLPFKIMLFVLVDGWHLLLGSLAQSF 247 >gi|260574384|ref|ZP_05842388.1| flagellar biosynthetic protein FliP [Rhodobacter sp. SW2] gi|259023280|gb|EEW26572.1| flagellar biosynthetic protein FliP [Rhodobacter sp. SW2] Length = 242 Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 94/219 (42%), Positives = 142/219 (64%), Gaps = 5/219 (2%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 +N+ S+S ++ + T+LS+ P L +M+TCFP + V SILR +G+ PPN++ Sbjct: 28 LNLGDQGSLSARSIQLLVLITVLSLVPGLAVMITCFPFIVTVLSILRQAIGLQQSPPNML 87 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 I+SLALF+T+YVM P + G++PL + TAI + PF VFM + D Sbjct: 88 IVSLALFLTWYVMDPVFTEAWTTGMEPLTRGETDLQTAIPAILAPFRVFM---SARMDAD 144 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 F M + R + + +++PSF++SE++R+FEIGFLI LPFLIID++VA ++ Sbjct: 145 TFAAM--QALRPGESSSVAQAPLSLMVPSFLLSEIQRAFEIGFLIFLPFLIIDLVVAAVL 202 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+MGMMM+PP+ +SLPFK+ FFV+ DGWSL+ LV+S+ Sbjct: 203 MSMGMMMVPPSIVSLPFKLAFFVVADGWSLVSGALVRSY 241 >gi|238785487|ref|ZP_04629470.1| Flagellar biosynthetic protein fliP [Yersinia bercovieri ATCC 43970] gi|238713589|gb|EEQ05618.1| Flagellar biosynthetic protein fliP [Yersinia bercovieri ATCC 43970] Length = 249 Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 96/231 (41%), Positives = 149/231 (64%), Gaps = 8/231 (3%) Query: 17 VFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74 VFA+ L +++ P +W V+T T LS P L+M+T F R IIV +LR Sbjct: 23 VFAQ--LPGLISQPLANGGQSWSLPVQTLVFITALSFLPAALLMMTSFTRIIIVLGLLRN 80 Query: 75 GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134 +G S PPN V++ LALF+TF++MSP D+ + P ++I+ A+ + ++P Sbjct: 81 ALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAMDKGSQPLRE 140 Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194 FM TRE DL+L+ +A+ + + + RIL+P+++ SEL+ +F+IGF + +P Sbjct: 141 FMLRQTRESDLALYARLANLP----PLEGPEVVPMRILLPAYVTSELKTAFQIGFTVFIP 196 Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 FLIID++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 197 FLIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 247 >gi|291532049|emb|CBK97634.1| flagellar biosynthetic protein FliP [Eubacterium siraeum 70/3] Length = 307 Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 90/208 (43%), Positives = 129/208 (62%), Gaps = 9/208 (4%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T+LS+AP LL+M+T F R II FS LRT M PPN+V+ L+LF+T ++M P Sbjct: 98 TVLSLAPSLLVMMTSFARIIICFSFLRTAMQTQPTPPNMVLTGLSLFLTIFIMWPVFSEI 157 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 E QP ++T AI +P FM T D+ F+D+ S + D+ Sbjct: 158 NETAYQPYAAGEMTMEQAIDAAGKPLKTFMLKQTTNDDMKFFLDLKGQSMSDVTGGATDN 217 Query: 167 IE---------YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 I + +IP+F++SEL+R+F++GFLI +PFL+ID++V++ +MAMGMMMLPP Sbjct: 218 ITLENYSEKLGFETVIPAFIVSELKRAFQMGFLIFIPFLVIDLVVSSTLMAMGMMMLPPA 277 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLPFK+I FVL+DGW L+V +V S+ Sbjct: 278 MISLPFKIILFVLVDGWQLMVGTIVNSY 305 >gi|269965693|ref|ZP_06179806.1| Flagellar biosynthetic protein fliP [Vibrio alginolyticus 40B] gi|269829761|gb|EEZ83997.1| Flagellar biosynthetic protein fliP [Vibrio alginolyticus 40B] Length = 289 Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 92/214 (42%), Positives = 137/214 (64%), Gaps = 8/214 (3%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D S++ I+ + T+L P ++I++T F R ++V SILR MG+ P N VII +A Sbjct: 82 DYSVTLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 138 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 LF+TF+VMSP L+ + +QP +N Q+T A P FM TR KDL F+ M Sbjct: 139 LFLTFFVMSPVLNEINDKAVQPYLNEQVTAREAFDAAQAPMKAFMLKQTRIKDLETFVTM 198 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + + + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM Sbjct: 199 SGE-----QVEDPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 253 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 254 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287 >gi|87119473|ref|ZP_01075370.1| Flagellar transport protein FliP [Marinomonas sp. MED121] gi|86164949|gb|EAQ66217.1| Flagellar transport protein FliP [Marinomonas sp. MED121] Length = 249 Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 88/214 (41%), Positives = 144/214 (67%), Gaps = 6/214 (2%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D S+S I+ I T L++ P L M+T F R ++V +ILR +G+ P N +++ +A Sbjct: 40 DYSVSLQILF---IMTALTLLPAALTMMTAFTRIVVVLAILRQAIGLQQTPSNQIMVGMA 96 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 LF+T ++M+PTLD+ + +QP + +IT AI++ + P FM TRE D++LF+ + Sbjct: 97 LFLTLFIMTPTLDKINAVALQPYLEEEITSIQAIEKASVPIRDFMLAQTRESDIALFVKL 156 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 A + I + + + IL+P+F+ SEL+ +F+IGF+I +PFL++DM+VA+++MAMGM Sbjct: 157 AG---KEGQIESLETLPFTILMPAFVASELKTAFQIGFMIFIPFLVLDMVVASVLMAMGM 213 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MML P ISLPFK++ FV++DGW++++ L SF Sbjct: 214 MMLSPIIISLPFKIMLFVMVDGWAMIMGTLAASF 247 >gi|85711032|ref|ZP_01042092.1| flagellar biosynthesis protein [Idiomarina baltica OS145] gi|85694945|gb|EAQ32883.1| flagellar biosynthesis protein [Idiomarina baltica OS145] Length = 249 Score = 182 bits (462), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 97/243 (39%), Positives = 145/243 (59%), Gaps = 6/243 (2%) Query: 5 CFFALFLVTPELVFAKSSLH--DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCF 62 CF L L+ P++ A + V P + ++ I T L+ P ++IM+T F Sbjct: 9 CFVLLALLLPDVANAMQDISAVTVKTNPDGSEEYSVTLQILAIMTALTFIPAMVIMMTSF 68 Query: 63 PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122 R I+V +ILR +G+ P N V+I + LF+TF++MSP L + +QP +N ++T Sbjct: 69 TRIIVVLAILRQAIGLQQSPSNQVLIGITLFLTFFIMSPVLTEINDKALQPYLNEEVTSM 128 Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182 A+ R P FM TR D+ F D+A T+I + ILIPSF+ SEL+ Sbjct: 129 EAVDRAKAPLKAFMLAQTRVTDIQTFADIAG----ETNIQSPEDTPMSILIPSFITSELK 184 Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242 +F+IGF++ +PFLIID++VA+++MAMGMMML P +SLPFK++ FVL+DGW+L + L Sbjct: 185 TAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLTMSTLA 244 Query: 243 KSF 245 SF Sbjct: 245 GSF 247 >gi|238751771|ref|ZP_04613259.1| Flagellar biosynthetic protein fliP [Yersinia rohdei ATCC 43380] gi|238710042|gb|EEQ02272.1| Flagellar biosynthetic protein fliP [Yersinia rohdei ATCC 43380] Length = 243 Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 93/227 (40%), Positives = 146/227 (64%), Gaps = 6/227 (2%) Query: 21 SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 + L +++ P +W V+T T LS P L+M+T F R IIV +LR +G Sbjct: 19 AQLPGIISQPLANGGQSWSLPVQTLVFITALSFLPAALLMMTSFTRIIIVLGLLRNALGT 78 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 S PPN V++ LALF+TF++MSP D+ + P ++I+ A+ + ++P FM Sbjct: 79 PSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAMDKGSQPLREFMLR 138 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 TRE DL+L+ +A+ + + + RIL+P+++ SEL+ +F+IGF + +PFLII Sbjct: 139 QTRETDLALYARLANLPP----LEGPEVVPMRILLPAYVTSELKTAFQIGFTVFIPFLII 194 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 D++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 195 DLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 241 >gi|323491455|ref|ZP_08096639.1| flagellar biosynthesis protein FliP [Vibrio brasiliensis LMG 20546] gi|323314324|gb|EGA67404.1| flagellar biosynthesis protein FliP [Vibrio brasiliensis LMG 20546] Length = 291 Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 94/214 (43%), Positives = 140/214 (65%), Gaps = 8/214 (3%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D SI+ I+ + T+L P ++I++T F R ++V SILR MG+ P N VII +A Sbjct: 84 DYSINLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 140 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 +F+TF++MSP L + + IQP +N QIT A P FM TR KDL F+++ Sbjct: 141 IFLTFFIMSPVLSKINDDAIQPYINEQITARQAFDLAQTPMKDFMLKQTRVKDLETFVNI 200 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + S+ T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM Sbjct: 201 SGSTA-----TAPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 255 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 256 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 289 >gi|323700135|ref|ZP_08112047.1| flagellar biosynthetic protein FliP [Desulfovibrio sp. ND132] gi|323460067|gb|EGB15932.1| flagellar biosynthetic protein FliP [Desulfovibrio desulfuricans ND132] Length = 252 Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 96/201 (47%), Positives = 132/201 (65%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + TILSIAP +L+ +T F R IIVF +R MG +PPN ++ +LA+FMT +M P Sbjct: 55 LLTILSIAPAILLTMTSFTRIIIVFHFIRQAMGTQQMPPNQILAALAIFMTMVIMYPVGK 114 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 E +QP MN I T A+ R P FM +TREKDLS+F +S + Sbjct: 115 TINETALQPYMNETINFTEALTRAQVPIRQFMFKHTREKDLSIF----YSITKEPRPENK 170 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + + +L+ ++ ISEL+ F IGFLI +PFLI+DM+VA+I++AMGMMMLPP ISLPFK Sbjct: 171 EEVPTIMLVAAYTISELKTGFTIGFLIYIPFLILDMVVASILLAMGMMMLPPVMISLPFK 230 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ F+LIDGW+LLV +LV +F Sbjct: 231 ILLFILIDGWNLLVGSLVNTF 251 >gi|134095087|ref|YP_001100162.1| flagellar biosynthesis protein FliP [Herminiimonas arsenicoxydans] gi|133738990|emb|CAL62038.1| Flagellar biosynthetic protein FliP Precursor [Herminiimonas arsenicoxydans] Length = 252 Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 89/193 (46%), Positives = 130/193 (67%), Gaps = 4/193 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +L+M+T F R IIV S+LR +G S PPN VII L+LF+T +VMSP LD+ Q Sbjct: 63 PAVLLMMTSFTRIIIVLSLLRQALGTQSSPPNQVIIGLSLFLTLFVMSPVLDKIYVDAYQ 122 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P N+I A+ + P FM TRE DL+L++ M+ + ++ + I RIL Sbjct: 123 PFSANKIQMGEALDKAVAPLKTFMIKQTRESDLALYVKMS----KGPELQGPEDIPLRIL 178 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 +P+F+ SEL+ +F+I F I +PFLIIDM+VA+++M+MGMMM+ P ++LPFK++ FVL+D Sbjct: 179 VPAFITSELKTAFQISFAIFIPFLIIDMVVASVLMSMGMMMVSPAIVALPFKLMLFVLVD 238 Query: 233 GWSLLVENLVKSF 245 GW LL+ +L +SF Sbjct: 239 GWQLLIGSLAQSF 251 >gi|299534771|ref|ZP_07048101.1| flagellar biosynthesis protein FliP [Lysinibacillus fusiformis ZC1] gi|298729859|gb|EFI70404.1| flagellar biosynthesis protein FliP [Lysinibacillus fusiformis ZC1] Length = 221 Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 90/195 (46%), Positives = 135/195 (69%), Gaps = 6/195 (3%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +LI++T F R +IV S +RT + +PPN VII LALF+TF++M+PT + + Sbjct: 32 APSILILMTSFARIVIVLSFVRTALATQQMPPNQVIIGLALFLTFFIMAPTFQEVNKEAL 91 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYR 170 QPL +I A R + PF FM +TR+KDL LF+ ++ D + + I Sbjct: 92 QPLFAEEIGIEEAYDRASVPFKEFMSKHTRQKDLDLFL-----TYNQADKPASVEEIPLT 146 Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230 +L+P+F +SE++ +F+IGF+I +PFL+IDMIVA+ +M+MGMMMLPP ISLPFK++ FVL Sbjct: 147 MLVPAFALSEIKTAFQIGFMIFIPFLVIDMIVASTLMSMGMMMLPPVMISLPFKILLFVL 206 Query: 231 IDGWSLLVENLVKSF 245 +DGW L++++L++SF Sbjct: 207 VDGWYLVMKSLLQSF 221 >gi|119385379|ref|YP_916435.1| flagellar biosynthesis protein FliP [Paracoccus denitrificans PD1222] gi|119375146|gb|ABL70739.1| flagellar biosynthetic protein FliP [Paracoccus denitrificans PD1222] Length = 241 Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 89/203 (43%), Positives = 136/203 (66%), Gaps = 7/203 (3%) Query: 43 FGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT 102 + T LS+AP + IMVTCFP + V SILR +G+ PPN++I+SLA+F+T++VM+P Sbjct: 45 LAVMTALSLAPGIAIMVTCFPFIVTVLSILRQSLGLQQSPPNMLIVSLAMFLTWFVMNPV 104 Query: 103 LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT 162 L + ++ PL + +IT A +R PF FM + T + L+ ++A D Sbjct: 105 LTEAWDVAGAPLRDGRITVEQAFERGIVPFRGFMEHRTDPEMLATLAEIAPDPEAAPD-- 162 Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222 +LIP+FMISE++R+FEIGFL+ LPFLIID++V+ ++M+MGMMM+PP ++LP Sbjct: 163 -----RLSVLIPAFMISEIQRAFEIGFLVALPFLIIDLVVSAVLMSMGMMMVPPVVVALP 217 Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245 FK+ FFV++DGW ++ LV+S+ Sbjct: 218 FKLAFFVVVDGWGMIAAALVRSY 240 >gi|86146126|ref|ZP_01064452.1| flagellar biosynthesis protein [Vibrio sp. MED222] gi|218708833|ref|YP_002416454.1| flagellar biosynthesis protein FliP [Vibrio splendidus LGP32] gi|85836073|gb|EAQ54205.1| flagellar biosynthesis protein [Vibrio sp. MED222] gi|218321852|emb|CAV17828.1| Flagellar biosynthetic protein fliP [Vibrio splendidus LGP32] Length = 309 Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 92/218 (42%), Positives = 141/218 (64%), Gaps = 8/218 (3%) Query: 28 NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87 N D SI+ I+ + T+L P ++I++T F R ++V SILR MG+ P N VI Sbjct: 98 NGGEDYSINLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVI 154 Query: 88 ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147 I +A+F+TF++MSP + + E +QP +N QI+ A P FM TR KDL Sbjct: 155 IGIAIFLTFFIMSPVISQVNEQAVQPYLNEQISARQAFDVAQGPIKSFMLKQTRIKDLET 214 Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 F++++ + +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++M Sbjct: 215 FVEISGA-----QVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLM 269 Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 AMGMMML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 270 AMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 307 >gi|332187877|ref|ZP_08389610.1| flagellar biosynthetic protein FliP [Sphingomonas sp. S17] gi|332012038|gb|EGI54110.1| flagellar biosynthetic protein FliP [Sphingomonas sp. S17] Length = 293 Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 89/201 (44%), Positives = 136/201 (67%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 I +L+I P +++M+T F R +IV +ILR +G+ PPN V+I LA+F++ ++M+PT+ Sbjct: 95 IMGLLTILPGIILMMTSFTRIVIVLAILRQALGLQQTPPNQVLIGLAMFLSLFIMAPTIS 154 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + IQP ++ T I+ P FM TR KD+++F MA S + N Sbjct: 155 QMNANAIQPYAEGRLPGTEMIKAAGAPLHAFMAKQTRVKDVTMFAQMAKSGPYAS---PN 211 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D I Y +L+P+F+ SEL+ +F+IGFLI LPF++ID++VAT++MA+GMMML P+ ISLPFK Sbjct: 212 D-IPYAVLLPAFVTSELKTAFQIGFLIFLPFIVIDLVVATVLMALGMMMLSPSIISLPFK 270 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW+L + +L SF Sbjct: 271 LLLFVLVDGWALTMGSLANSF 291 >gi|291613058|ref|YP_003523215.1| flagellar biosynthetic protein FliP [Sideroxydans lithotrophicus ES-1] gi|291583170|gb|ADE10828.1| flagellar biosynthetic protein FliP [Sideroxydans lithotrophicus ES-1] Length = 248 Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 96/242 (39%), Positives = 150/242 (61%), Gaps = 7/242 (2%) Query: 7 FALFLVTPELVFAKSSLHDVMN---IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63 FAL FA S +N P T ++T + + L+ P +L+M+T F Sbjct: 9 FALLFAMSTSAFAAESGLLALNSTPTPGGGQTYTLSLQTLILISSLTFLPAILLMMTGFT 68 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 R IIV +LR+ +G S PPN V++ LALF+TF+VM+P D+ P N+I+ Sbjct: 69 RIIIVLGLLRSAIGTPSSPPNQVLVGLALFLTFFVMAPVFDKIYSDAYLPYSENKISLQQ 128 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 A ++ + P FM TRE DL+LF+ +++S + + + +IL+P+++ SEL+ Sbjct: 129 AYEKGSAPLKAFMLRQTRETDLALFVRISNSE----PLQSAEDVPMKILVPAYVTSELKT 184 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 +F+IGF++ +PFLIIDM+VA+++M+MGMMM+ P SLPFK++ FVL DGW+LL+ +LV+ Sbjct: 185 AFQIGFVVFIPFLIIDMVVASVLMSMGMMMVSPAVFSLPFKIMLFVLADGWNLLIGSLVQ 244 Query: 244 SF 245 SF Sbjct: 245 SF 246 >gi|114777577|ref|ZP_01452558.1| flagellar biosynthetic protein fliP [Mariprofundus ferrooxydans PV-1] gi|114552048|gb|EAU54565.1| flagellar biosynthetic protein fliP [Mariprofundus ferrooxydans PV-1] Length = 249 Score = 182 bits (461), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 92/206 (44%), Positives = 136/206 (66%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + TIL++AP +L+M+T F R +IVF+ LR +G PPN ++I L+LF+T ++M Sbjct: 46 LKILAMLTILTLAPSILVMMTSFTRILIVFAFLRQALGTQQAPPNQILIGLSLFLTLFIM 105 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P + + P +N +I ++ A +R P FM TRE DL LF++ A Sbjct: 106 MPVWQKIDTTALTPYLNEEINQSVAFERGIAPLRDFMLKQTREDDLLLFLNAAKLKK--- 162 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 K + + +LIPSF+ISELR +FEIGFLI +PF+++D+IVA+++M+MGMMMLPP I Sbjct: 163 -PAKAEDMPMHVLIPSFVISELRTAFEIGFLIYIPFIVLDLIVASVLMSMGMMMLPPVMI 221 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLP K+I FVL+DGW L+ NL+ SF Sbjct: 222 SLPLKIILFVLVDGWHLITANLIASF 247 >gi|300693349|ref|YP_003749322.1| flip: flagellar biosynthesis protein. flip/mopc/spap family [Ralstonia solanacearum PSI07] gi|299075386|emb|CBJ34681.1| fliP: flagellar biosynthesis protein. fliP/mopC/spaP family [Ralstonia solanacearum PSI07] Length = 249 Score = 182 bits (461), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 94/206 (45%), Positives = 134/206 (65%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T T L P +L+M++ F R IIV S+LR +G + PPN V+I LALF+TF+VM Sbjct: 46 VQTLVFLTSLGFLPAILLMMSSFTRIIIVLSLLRHALGTQTTPPNQVLIGLALFLTFFVM 105 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP LD+ PL +++I+ A+ A P FM TRE DL+LF M + Sbjct: 106 SPVLDKVYTDAYVPLRDSKISVEQALDTAATPMRQFMLKQTREPDLALFAKMGNLP---- 161 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 I D + R LIP+F+ SEL+ +F+IGF I +PFL+ID++VA ++M+MGMMM+ P+ Sbjct: 162 PIASPDQVPMRALIPAFVTSELKTAFQIGFAIFIPFLVIDIVVAAVLMSMGMMMVTPSIF 221 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 222 SLPFKIMLFVLVDGWHLLLGSLAQSF 247 >gi|163789635|ref|ZP_02184073.1| flagellar biosynthesis protein P [Carnobacterium sp. AT7] gi|159875167|gb|EDP69233.1| flagellar biosynthesis protein P [Carnobacterium sp. AT7] Length = 254 Score = 182 bits (461), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 101/248 (40%), Positives = 159/248 (64%), Gaps = 14/248 (5%) Query: 7 FALFLVT----PELVFAKSSLHDVMNIPADL-----SISTWIVRTFGIFTILSIAPILLI 57 F+LFL + P+ V + + L D ++ DL ++ +V+ F + T LS+AP L+ Sbjct: 11 FSLFLTSFVLFPQ-VASAAELTDGLDGITDLFGKQSGGTSEVVQLFLLTTALSLAPTFLV 69 Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 + TCF R I+V S +R+ +G PPNLV++ +ALF++ ++M P ++ I P +N Sbjct: 70 LTTCFTRIIVVLSFVRSSLGTQQNPPNLVLMGIALFLSLFIMQPVYTDVMDEAITPYINE 129 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177 +I+ A + P FM TR++D+ LF+D++ + + D+ ND + + IP+F+ Sbjct: 130 EISGIEAFELAELPIKEFMYKQTRDEDIQLFLDISKT-EKPADV--ND-LPLTVAIPAFI 185 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 ISELR +F IGFLI +PFL+ID++VA+I+M+MGM ML P ISLPFK++ FVL+DGW L+ Sbjct: 186 ISELRTAFTIGFLIFIPFLVIDIVVASILMSMGMFMLSPVMISLPFKLLLFVLVDGWYLV 245 Query: 238 VENLVKSF 245 VE+LV F Sbjct: 246 VESLVTGF 253 >gi|225159018|ref|ZP_03725328.1| Triacylglycerol lipase [Opitutaceae bacterium TAV2] gi|224802397|gb|EEG20659.1| Triacylglycerol lipase [Opitutaceae bacterium TAV2] Length = 297 Score = 182 bits (461), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 85/216 (39%), Positives = 147/216 (68%), Gaps = 8/216 (3%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P ++S+ IV + T+L++AP L++++T F R +IV ++RT +G+ + P N ++I Sbjct: 88 PGEISVGLQIVV---VMTLLTVAPSLILLMTSFTRLVIVLGLVRTALGVPNAPANQIVIG 144 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 L+LF+T ++M P + R+ + +QP M ++ A+ + AEP FM TR +DL F+ Sbjct: 145 LSLFLTIFIMGPVIQRANQEALQPYMAGEMRSADALAKAAEPVKEFMLKQTRTRDLEFFL 204 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 + T+ + R++IP+F+ISEL+ +F++GFL+ LPFL+ID++V++ +M++ Sbjct: 205 QLGRFPP-----TRVQDLPLRVVIPAFVISELQTAFQMGFLLFLPFLVIDLLVSSTLMSL 259 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMM+PP +SLPFK++ FVL+DGW L+V++LV+SF Sbjct: 260 GMMMMPPAIVSLPFKLLLFVLVDGWHLVVKSLVESF 295 >gi|167037653|ref|YP_001665231.1| flagellar biosynthesis protein FliP [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116068|ref|YP_004186227.1| flagellar biosynthetic protein FliP [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856487|gb|ABY94895.1| flagellar biosynthetic protein FliP [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929159|gb|ADV79844.1| flagellar biosynthetic protein FliP [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 221 Score = 182 bits (461), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 90/194 (46%), Positives = 132/194 (68%), Gaps = 5/194 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +LIM+T F R +IV S LR +G+ +PPN V+I LALF+T ++M+P I Sbjct: 32 APSILIMMTSFTRIVIVLSFLRNALGLQQMPPNQVLIGLALFLTLFIMAPIGQDINNNAI 91 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 +P +IT+ A Q +P FM TR+ DL+LF+ +A N + + R+ Sbjct: 92 KPYTEGKITQEEAYQNAIKPLKNFMLKQTRQSDLNLFVSLAKIKVNNAE-----DLPMRV 146 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 +IPSF+ISEL+ +FEIGF+I +PFLIID++VA+++M+MGM MLPP ISLPFKV+ F+L+ Sbjct: 147 VIPSFIISELKTAFEIGFIIYIPFLIIDIVVASVLMSMGMFMLPPVLISLPFKVLLFILV 206 Query: 232 DGWSLLVENLVKSF 245 DGW+L+V++L+ F Sbjct: 207 DGWNLVVKSLILGF 220 >gi|152979946|ref|YP_001353121.1| flagellar biosynthesis protein FliP [Janthinobacterium sp. Marseille] gi|151280023|gb|ABR88433.1| Flip component of flagellar biosynthesis pathway [Janthinobacterium sp. Marseille] Length = 252 Score = 182 bits (461), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 88/193 (45%), Positives = 130/193 (67%), Gaps = 4/193 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +L+M+T F R IIV S+LR +G S PPN VII L+LF+T +VMSP LD+ Q Sbjct: 63 PAVLLMMTSFTRIIIVLSLLRQALGTQSSPPNQVIIGLSLFLTLFVMSPVLDKIYVDAYQ 122 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P N+I A+ + P FM TRE DL+L++ ++ + ++ + I RIL Sbjct: 123 PFSQNKIQMQEALDKAVAPLKTFMIKQTRESDLALYVKLS----KGPELQGPEDIPLRIL 178 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 +P+F+ SEL+ +F+I F I +PFLIIDM+VA+++M+MGMMM+ P ++LPFK++ FVL+D Sbjct: 179 VPAFVTSELKTAFQISFAIFIPFLIIDMVVASVLMSMGMMMVSPAIVALPFKLMLFVLVD 238 Query: 233 GWSLLVENLVKSF 245 GW LL+ +L +SF Sbjct: 239 GWQLLIGSLAQSF 251 >gi|160876167|ref|YP_001555483.1| flagellar biosynthesis protein FliP [Shewanella baltica OS195] gi|217972626|ref|YP_002357377.1| flagellar biosynthesis protein FliP [Shewanella baltica OS223] gi|160861689|gb|ABX50223.1| flagellar biosynthetic protein FliP [Shewanella baltica OS195] gi|217497761|gb|ACK45954.1| flagellar biosynthetic protein FliP [Shewanella baltica OS223] gi|315268363|gb|ADT95216.1| flagellar biosynthetic protein FliP [Shewanella baltica OS678] Length = 248 Score = 182 bits (461), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 90/201 (44%), Positives = 135/201 (67%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T LS P +LIM+T F R IIV SILR +G+ P N V+I ++LFMTF++M+P D Sbjct: 51 LMTSLSFLPAMLIMLTSFTRIIIVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFD 110 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 R + G++P + Q+T A ++ EP FM R DL F+++ S ++N I Sbjct: 111 RIYDEGVKPYIEEQLTLQQAFEKGKEPLKGFMLGQVRTTDLKTFIEI--SGYKN--IKSP 166 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + +LIP+F+ SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK Sbjct: 167 EEAPMSVLIPAFITSELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFK 226 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGWSL++ L SF Sbjct: 227 IMLFVLVDGWSLVLGTLANSF 247 >gi|325981181|ref|YP_004293583.1| flagellar biosynthetic protein FliP [Nitrosomonas sp. AL212] gi|325530700|gb|ADZ25421.1| flagellar biosynthetic protein FliP [Nitrosomonas sp. AL212] Length = 248 Score = 182 bits (461), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 86/193 (44%), Positives = 135/193 (69%), Gaps = 4/193 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P L++M++ F R IIV S+LR +G S PPN V++ LALF+TF++MSP +DR Sbjct: 58 PALVLMMSSFTRIIIVLSLLRMALGTQSSPPNQVLLGLALFLTFFIMSPVIDRVYSEAYL 117 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P ++I+ A ++ + P FM + TRE DL+LF+ ++ S ++ D + +IL Sbjct: 118 PFSEDKISIMEAAEKASVPLKSFMLHQTRETDLALFVQISESE----ELESRDQVPLKIL 173 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 +P+++ SEL+ +F+IGF+I +PFLIID++V++++MAMGMMML P ISLPFK++ FVL+D Sbjct: 174 VPAYITSELKTAFQIGFVIFIPFLIIDLVVSSVLMAMGMMMLSPMIISLPFKLMLFVLVD 233 Query: 233 GWSLLVENLVKSF 245 GW L++ +L +SF Sbjct: 234 GWHLIIGSLTQSF 246 >gi|167770202|ref|ZP_02442255.1| hypothetical protein ANACOL_01545 [Anaerotruncus colihominis DSM 17241] gi|167667524|gb|EDS11654.1| hypothetical protein ANACOL_01545 [Anaerotruncus colihominis DSM 17241] Length = 270 Score = 182 bits (461), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 99/240 (41%), Positives = 148/240 (61%), Gaps = 10/240 (4%) Query: 16 LVFAKSSLHDVMNIPADLSISTWIVRTFG------IFTILSIAPILLIMVTCFPRFIIVF 69 LV + H + DL FG + T+L++AP +LIM+T F R IIV Sbjct: 30 LVCCTITAHAAPMVTVDLGSGDASGNAFGLIDMLFVVTLLALAPSILIMMTSFTRIIIVL 89 Query: 70 SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129 S LR +G+ PPN V+I LALF+T ++M P +++ E QP QIT+ A+ R Sbjct: 90 SFLRNALGIQQTPPNQVLIGLALFLTLFIMFPVINQINEEAYQPYRQGQITQEEAVTRGI 149 Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSS---HRNTDITKN-DHIEYRILIPSFMISELRRSF 185 P FM TR D++LF+ +A+ + I ++ + I+IP+F+ SEL+++F Sbjct: 150 RPLKEFMIRQTRTDDVNLFLSIANDKRPPEQAITIPEDLTELGMEIVIPAFITSELKQAF 209 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGFL+ +PFLIIDM+V++ +M+MGM+MLPP+ ISLPFK++ FV++DGW LL+ NLV+ F Sbjct: 210 MIGFLLFIPFLIIDMVVSSTLMSMGMVMLPPSMISLPFKIMMFVMVDGWGLLLGNLVRGF 269 >gi|55977145|gb|AAV68366.1| FliP [Herminiimonas arsenicoxydans] Length = 271 Score = 182 bits (461), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 89/193 (46%), Positives = 130/193 (67%), Gaps = 4/193 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +L+M+T F R IIV S+LR +G S PPN VII L+LF+T +VMSP LD+ Q Sbjct: 82 PAVLLMMTSFTRIIIVLSLLRQALGTQSSPPNQVIIGLSLFLTLFVMSPVLDKIYVDAYQ 141 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P N+I A+ + P FM TRE DL+L++ M+ + ++ + I RIL Sbjct: 142 PFSANKIQMGEALDKAVAPLKTFMIKQTRESDLALYVKMS----KGPELQGPEDIPLRIL 197 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 +P+F+ SEL+ +F+I F I +PFLIIDM+VA+++M+MGMMM+ P ++LPFK++ FVL+D Sbjct: 198 VPAFITSELKTAFQISFAIFIPFLIIDMVVASVLMSMGMMMVSPAIVALPFKLMLFVLVD 257 Query: 233 GWSLLVENLVKSF 245 GW LL+ +L +SF Sbjct: 258 GWQLLIGSLAQSF 270 >gi|126175118|ref|YP_001051267.1| flagellar biosynthesis protein FliP [Shewanella baltica OS155] gi|153001442|ref|YP_001367123.1| flagellar biosynthesis protein FliP [Shewanella baltica OS185] gi|125998323|gb|ABN62398.1| flagellar biosynthetic protein FliP [Shewanella baltica OS155] gi|151366060|gb|ABS09060.1| flagellar biosynthetic protein FliP [Shewanella baltica OS185] Length = 248 Score = 182 bits (461), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 90/201 (44%), Positives = 135/201 (67%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T LS P +LIM+T F R IIV SILR +G+ P N V+I ++LFMTF++M+P D Sbjct: 51 LMTSLSFLPAMLIMLTSFTRIIIVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFD 110 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 R + G++P + Q+T A ++ EP FM R DL F+++ S ++N I Sbjct: 111 RIYDEGVKPYIEEQLTLQQAFEKGKEPLKGFMLGQVRTTDLKTFIEI--SGYKN--IKSP 166 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + +LIP+F+ SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK Sbjct: 167 EEAPMSVLIPAFITSELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFK 226 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGWSL++ L SF Sbjct: 227 IMLFVLVDGWSLVLGTLANSF 247 >gi|28211318|ref|NP_782262.1| flagellar biosynthesis protein FliP [Clostridium tetani E88] gi|28203758|gb|AAO36199.1| flagellar biosynthetic protein fliP [Clostridium tetani E88] Length = 261 Score = 182 bits (461), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 89/206 (43%), Positives = 144/206 (69%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ F + T LSI P ++M+T F R +VF LR MG PPN V++ LALF+T ++M Sbjct: 59 LKLFLMITALSILPSFIVMMTSFVRISVVFGFLRNAMGTQQSPPNQVLVGLALFLTIFIM 118 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +P + IQP + ++I + A + ++P FM TREKDL LF+++ S+ + Sbjct: 119 TPVYQIINKEAIQPFVKSEINQEQAFETGSKPLREFMLKQTREKDLKLFVEI---SNIDK 175 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 +ITK +++ +++PSF+ISEL+ +F+IGFL+ +PFL+ID++VA+++M+MGM MLPP + Sbjct: 176 NITK-ENVPLYVVVPSFIISELKTAFQIGFLLYIPFLVIDLVVASVLMSMGMFMLPPVMV 234 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FV++DGW LL+++L+ SF Sbjct: 235 SLPFKLLLFVMVDGWHLLIKSLIMSF 260 >gi|289578418|ref|YP_003477045.1| flagellar biosynthetic protein FliP [Thermoanaerobacter italicus Ab9] gi|297544694|ref|YP_003676996.1| flagellar biosynthetic protein FliP [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528131|gb|ADD02483.1| flagellar biosynthetic protein FliP [Thermoanaerobacter italicus Ab9] gi|296842469|gb|ADH60985.1| flagellar biosynthetic protein FliP [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 221 Score = 181 bits (460), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 89/194 (45%), Positives = 134/194 (69%), Gaps = 5/194 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +LIM+T F R +IV S LR +G+ +PPN V+I LALF+T ++M+P I Sbjct: 32 APSILIMMTSFTRIVIVLSFLRNALGLQQMPPNQVLIGLALFLTLFIMAPIGQDINNNAI 91 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 +P +IT+ A Q +P FM TR+ DL+LF+ +A +++ + + R+ Sbjct: 92 KPYTEGKITQEEAYQNAIKPLKSFMLKQTRQNDLNLFVSLAK-----INVSNVEDLPMRV 146 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 +IP+F+ISEL+ +FEIGF+I +PFLIID+IVA+++M+MGM MLPP ISLPFKV+ F+L+ Sbjct: 147 VIPAFIISELKTAFEIGFIIYIPFLIIDIIVASVLMSMGMFMLPPVLISLPFKVLLFILV 206 Query: 232 DGWSLLVENLVKSF 245 DGW+L+V++L+ F Sbjct: 207 DGWNLVVKSLILGF 220 >gi|83646770|ref|YP_435205.1| flagellar biosynthesis protein FliP [Hahella chejuensis KCTC 2396] gi|83634813|gb|ABC30780.1| flagellar biosynthetic protein FliP [Hahella chejuensis KCTC 2396] Length = 243 Score = 181 bits (460), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 92/206 (44%), Positives = 138/206 (66%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + T+LS+AP LLI +T F R +IV S+LR GM PPN VII+L+LF+T + M Sbjct: 41 LQVLAVLTVLSLAPALLIALTSFTRIVIVLSMLRYAFGMQQTPPNTVIIALSLFLTLFTM 100 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +P ++ + +QP + ++ T A+ P FM TREKDL+L ++MA T Sbjct: 101 APVFNKIDQQAVQPYLAGELVFTEAVNAGLAPMREFMVRQTREKDLALAIEMAGEESPET 160 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 ND I LI +FM+SEL+ +F+IGF+I LPFL+ID++ A+++M+MGM+M+PP +I Sbjct: 161 ---LND-ISNTSLITAFMLSELQTAFQIGFVIFLPFLLIDLVSASVLMSMGMIMVPPLTI 216 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLP K++ FVLI+GW+L+ + LV SF Sbjct: 217 SLPVKILMFVLIEGWTLVAQALVGSF 242 >gi|168334561|ref|ZP_02692717.1| flagellar biosynthetic protein FliP [Epulopiscium sp. 'N.t. morphotype B'] Length = 243 Score = 181 bits (460), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 98/232 (42%), Positives = 144/232 (62%), Gaps = 4/232 (1%) Query: 14 PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73 P VF+ +L+ + P T + F I T L + P LL++ T F R II L+ Sbjct: 14 PTRVFSLDALNSITQSP---EFGTSLQLVFFI-TFLGLIPTLLLVSTSFTRIIITLYFLK 69 Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133 T MG +PPN V+I LALF+TF+VMSP + I P QI++ +++ A P Sbjct: 70 TAMGTQQMPPNQVVIGLALFLTFFVMSPVVSTINTEAIVPYSEGQISQMEFLEQAAAPIK 129 Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193 FM TR +D+ LFMD+++ + + Y I++P+F+ISE+R F IGFL+ L Sbjct: 130 EFMVMQTRXEDIKLFMDLSNQPAIVDETNILAQLPYHIVVPAFIISEIRAGFVIGFLMYL 189 Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 PF+IIDM+VA+++MAMGMMMLPP ISLPFK++ F+++DGW L++ LV++F Sbjct: 190 PFIIIDMVVASVLMAMGMMMLPPAMISLPFKILIFIIVDGWHLIIGELVETF 241 >gi|149193956|ref|ZP_01871054.1| flagellar biosynthesis protein P [Caminibacter mediatlanticus TB-2] gi|149135909|gb|EDM24387.1| flagellar biosynthesis protein P [Caminibacter mediatlanticus TB-2] Length = 243 Score = 181 bits (460), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 96/199 (48%), Positives = 136/199 (68%), Gaps = 4/199 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 TIL +AP ++++ T F R ++VF LR +G PP +++SL+L +TF++M P + Sbjct: 48 TILVLAPSIVLVATSFVRLLVVFGFLRQALGTPQSPPTTLLVSLSLVLTFFIMEPYAKEA 107 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 + GI+P M +I A R +PF FM NTREKDL+LF + H + T D Sbjct: 108 YKSGIKPYMEQKIGYEEAFNRAVKPFKRFMIKNTREKDLALFFRIRHLPNPKTI----DD 163 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 + IL+P+FMISEL+ +FEIGFLI LPFLIIDM+V++I+M++GMMMLPP ISLPFK++ Sbjct: 164 VPLSILVPAFMISELKTAFEIGFLIFLPFLIIDMVVSSILMSLGMMMLPPVMISLPFKIL 223 Query: 227 FFVLIDGWSLLVENLVKSF 245 F+L+DGW+L+V LV SF Sbjct: 224 VFILVDGWNLIVMGLVNSF 242 >gi|312884901|ref|ZP_07744591.1| flagellar biosynthesis protein FliP [Vibrio caribbenthicus ATCC BAA-2122] gi|309367378|gb|EFP94940.1| flagellar biosynthesis protein FliP [Vibrio caribbenthicus ATCC BAA-2122] Length = 290 Score = 181 bits (460), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 90/206 (43%), Positives = 136/206 (66%), Gaps = 5/206 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + T+L P ++I++T F R ++V SILR MG+ P N VI+ +A+F+TF++M Sbjct: 88 LQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIVGIAIFLTFFIM 147 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP L++ E IQP +N QIT A P FM TR KDL F++++ S+ Sbjct: 148 SPVLNKINEDAIQPYINEQITARKAFDLAQIPMRDFMLKQTRVKDLETFVNISGSTA--- 204 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 T + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGMMML P + Sbjct: 205 --TATSDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGMMMLSPMIV 262 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW+L++ L SF Sbjct: 263 SLPFKLMLFVLVDGWNLILSTLAGSF 288 >gi|254785480|ref|YP_003072909.1| flagellar biosynthesis protein FliP [Teredinibacter turnerae T7901] gi|237683712|gb|ACR10976.1| flagellar biosynthetic protein FliP [Teredinibacter turnerae T7901] Length = 283 Score = 181 bits (460), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 90/201 (44%), Positives = 132/201 (65%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T L+ P +L+M+T F R IIVF+ILR MG+ P N ++I LALF+T ++M+P LD Sbjct: 85 LMTALTFLPAILMMMTSFTRIIIVFAILRQAMGLQQSPSNQILIGLALFLTLFIMTPVLD 144 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 +QP MN Q++ A+ PF FM NTRE DL LF + + + Sbjct: 145 EVNRTALQPYMNEQMSARQALDNAKLPFHAFMIANTRESDLDLFFRIGDIAP----VATP 200 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + + +L+P+F+ SEL+ +F+IGF+I +PFL+ID++VA+++MAMGMMML P ISLPFK Sbjct: 201 QDVPFTVLMPAFVTSELKTAFQIGFIIFIPFLVIDIVVASVLMAMGMMMLSPLIISLPFK 260 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW L++ L SF Sbjct: 261 IMLFVLVDGWGLIMGTLAASF 281 >gi|146278775|ref|YP_001168934.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides ATCC 17025] gi|145557016|gb|ABP71629.1| flagellar biosynthetic protein FliP [Rhodobacter sphaeroides ATCC 17025] Length = 236 Score = 181 bits (460), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 94/212 (44%), Positives = 141/212 (66%), Gaps = 5/212 (2%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 S++T V+ + T+LS+ P L +M+TCFP + V SILR +G+ PPN++I+SLALF Sbjct: 29 SLTTRSVQLIVLITLLSLVPALGMMITCFPFIVTVLSILRQAIGLQQAPPNMLIVSLALF 88 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 +T+Y+M P + GI+PL N+I A+ + PF FM DL F + Sbjct: 89 LTWYIMDPVFTEAWTRGIEPLTRNEIDIQQALVLASAPFRGFMAARL---DLETFSTL-- 143 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 + R +I+ + +L+PSF++SE++R+FEIGFLI LPFLIID++VA ++M+MGMMM Sbjct: 144 QALRPGEISPPLEAPFSVLVPSFLLSEIQRAFEIGFLIFLPFLIIDLVVAAVLMSMGMMM 203 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PP +S+PFK+ FFV+ DGWSL+ LV+S+ Sbjct: 204 VPPAVVSMPFKLAFFVVGDGWSLISGALVRSY 235 >gi|89094445|ref|ZP_01167385.1| flagellar biosynthetic protein FliP [Oceanospirillum sp. MED92] gi|89081337|gb|EAR60569.1| flagellar biosynthetic protein FliP [Oceanospirillum sp. MED92] Length = 250 Score = 181 bits (459), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 87/201 (43%), Positives = 136/201 (67%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T+L+ P +L+M+T F R IIVF+ILR +G+ P N +++ +A+F+T ++M+P LD Sbjct: 52 LMTMLTFLPAMLMMMTSFARIIIVFAILRQALGLQQTPSNQIMVGMAMFLTLFIMTPVLD 111 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + QP MN ++ A+Q + PF FM RE DL LFM ++ + T Sbjct: 112 QIYIQAAQPYMNEEMNVLEALQAASIPFREFMMLQVRESDLELFMRISGTPAVETP---- 167 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + I + +L+P+F+ SEL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P ISLPFK Sbjct: 168 EQIPFTVLVPAFVTSELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPVIISLPFK 227 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW+L++ L SF Sbjct: 228 IMLFVLVDGWALVIGTLAASF 248 >gi|126734123|ref|ZP_01749870.1| flagellar biosynthetic protein FliP [Roseobacter sp. CCS2] gi|126716989|gb|EBA13853.1| flagellar biosynthetic protein FliP [Roseobacter sp. CCS2] Length = 243 Score = 181 bits (459), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 90/214 (42%), Positives = 135/214 (63%), Gaps = 3/214 (1%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D S++T ++ + T+LS+ P + IMVTCFP I VF+ILR +G+ PPN++I+SLA Sbjct: 31 DGSLATRSIQLLILITVLSLVPGIAIMVTCFPFIITVFAILRQAIGLQQSPPNMLIVSLA 90 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 LF+T++VM P + GI PL+ QI R EP VFM + D+ Sbjct: 91 LFLTYFVMEPVFREAWSNGIDPLIQGQIALEEGFVRTIEPLQVFMLTRIDPDTFTALADL 150 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 N + I++PSF++SE+ R+F++GFLI +PFLIID++VA ++M+MGM Sbjct: 151 RPDVSGNGPASDA---PLSIVVPSFLLSEMERAFQVGFLIFMPFLIIDLVVAAVLMSMGM 207 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MM+PP +SLPFK+ FFV+ DGW+L+ +LV+ + Sbjct: 208 MMVPPAIVSLPFKLAFFVVADGWTLIATSLVQGY 241 >gi|317121829|ref|YP_004101832.1| flagellar biosynthetic protein FliP [Thermaerobacter marianensis DSM 12885] gi|315591809|gb|ADU51105.1| flagellar biosynthetic protein FliP [Thermaerobacter marianensis DSM 12885] Length = 227 Score = 181 bits (459), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 84/194 (43%), Positives = 132/194 (68%), Gaps = 4/194 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +LIM+T F R ++ S LR+ +G PPN V++ LALF+T +VM+P + + Sbjct: 34 APAILIMMTGFTRIVVALSFLRSALGTQQAPPNQVLVGLALFLTVFVMAPVWQQVYQDAW 93 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 P + QI + A+QR +P FM TRE+DL+LF++++ + D + + Sbjct: 94 VPYRDGQIGQVEALQRAQQPVREFMFRYTRERDLALFLELSGRG----PVESRDQVPTYV 149 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 LIP+F ISEL+ +F+IGF++ +PFL+IDM+VA+ +M+MGM+M+PP +SLPFK++ FVL+ Sbjct: 150 LIPAFAISELKTAFQIGFILYVPFLVIDMVVASTLMSMGMLMVPPMLVSLPFKILLFVLV 209 Query: 232 DGWSLLVENLVKSF 245 DGW+L+V +L+ SF Sbjct: 210 DGWNLVVRSLLASF 223 >gi|195953030|ref|YP_002121320.1| flagellar biosynthesis protein FliP [Hydrogenobaculum sp. Y04AAS1] gi|195932642|gb|ACG57342.1| flagellar biosynthetic protein FliP [Hydrogenobaculum sp. Y04AAS1] Length = 252 Score = 181 bits (458), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 96/210 (45%), Positives = 144/210 (68%), Gaps = 3/210 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 T +R I T+LS+AP ++IM T F R + V S+LR +G+ +VPPN VI SLALF+TF Sbjct: 44 TEAIRLILILTVLSLAPSIIIMTTSFIRIVTVLSVLRQAIGLPNVPPNQVITSLALFLTF 103 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 YVM P +++ + +QP + ++IT+ IQ EP FM NT+ F+ S+ Sbjct: 104 YVMYPVINQINQNALQPYLQHKITDKQFIQNTIEPIKDFMVRNTKVSTERTFL--LASNI 161 Query: 157 RNTDITKN-DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215 N D KN + + ++IP+FM+SEL +F+I FL+ LPFLIIDM+V+ I++AMG++M+P Sbjct: 162 PNKDNIKNINDLPLSVVIPAFMVSELSIAFQIIFLLYLPFLIIDMVVSAILLAMGIIMIP 221 Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 PT ISLPFK++ FVL++GW L++ +LV+S+ Sbjct: 222 PTVISLPFKIMLFVLVNGWELVILSLVRSY 251 >gi|221639477|ref|YP_002525739.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides KD131] gi|221160258|gb|ACM01238.1| Flagellar biosynthetic protein fliP [Rhodobacter sphaeroides KD131] Length = 249 Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 89/206 (43%), Positives = 135/206 (65%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + T L++ P L++ ++ F R IIV SILR +G PPN V+I+LALF+TF+VM Sbjct: 45 LQILALMTALTVLPSLVLGMSAFTRIIIVLSILRQALGTQQTPPNQVLIALALFLTFFVM 104 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 PTL E + P ++ QI AI+R F+ NTR+ DL +F D+A + Sbjct: 105 QPTLGALYEQSLSPFLDGQIEAQPAIERGGAIMKDFLIANTRQNDLLMFSDLAGAGPY-- 162 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + L+P+FM SEL+ +F+IGFL+ LPFL+IDM++A+I+MA+GMMML P + Sbjct: 163 --AEPTEVPFSTLLPAFMTSELKTAFQIGFLLFLPFLVIDMVIASILMALGMMMLSPMLV 220 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW+L V +L ++ Sbjct: 221 SLPFKLLLFVLVDGWALTVGSLAATY 246 >gi|120598260|ref|YP_962834.1| flagellar biosynthesis protein FliP [Shewanella sp. W3-18-1] gi|146293662|ref|YP_001184086.1| flagellar biosynthesis protein FliP [Shewanella putrefaciens CN-32] gi|120558353|gb|ABM24280.1| flagellar biosynthetic protein FliP [Shewanella sp. W3-18-1] gi|145565352|gb|ABP76287.1| flagellar biosynthetic protein FliP [Shewanella putrefaciens CN-32] gi|319427061|gb|ADV55135.1| flagellar biosynthetic protein FliP [Shewanella putrefaciens 200] Length = 248 Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 86/199 (43%), Positives = 133/199 (66%), Gaps = 4/199 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T LS P ++IM+T F R I+V SILR +G+ P N V+I ++LFMTF++M+P D+ Sbjct: 53 TSLSFLPAMVIMLTSFTRIIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDKI 112 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 + G++P ++ Q+T A + EP FM R DL F+D+ S ++N I + Sbjct: 113 YDQGVKPYIDEQLTLQQAFDKGKEPLRAFMLGQVRTTDLKTFIDI--SGYQN--INSPEE 168 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 +L+P+F+ SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK++ Sbjct: 169 APMSVLVPAFITSELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIM 228 Query: 227 FFVLIDGWSLLVENLVKSF 245 FVL+DGW L++ L SF Sbjct: 229 LFVLVDGWGLVLGTLANSF 247 >gi|114332025|ref|YP_748247.1| flagellar biosynthesis protein FliP [Nitrosomonas eutropha C91] gi|114309039|gb|ABI60282.1| flagellar biosynthetic protein FliP [Nitrosomonas eutropha C91] Length = 261 Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 97/244 (39%), Positives = 155/244 (63%), Gaps = 7/244 (2%) Query: 5 CFFALFLVTPELVFA-KSSLHDVMNIPADLSISTWIVRTFGIFTILSIA--PILLIMVTC 61 C L +V VFA K+ L + + PA +T+ + + + S+ P ++M++ Sbjct: 20 CIILLLVVGISPVFAQKAGLPAITSTPAAGGGTTYSLSLQTLLLLTSMTFLPATVLMMSS 79 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F R IIV S+LR +G S PPN V++ LALF++F++MSP +D+ P ++I+ Sbjct: 80 FTRIIIVLSLLRQALGTQSSPPNQVLVGLALFLSFFIMSPVIDKMYTEAYLPFSEDKISI 139 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 A+ + ++P +FM TRE D++LF ++ S +I D + +IL+P+++ SEL Sbjct: 140 IEAMDKASDPLKIFMLRQTRETDIALFARISGSE----EIESPDQVPMKILVPAYITSEL 195 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 + +F+IGF++ +PFLIIDM+VA+ +MAMGMMML P ISLPFK++ FVL+DGW LL+ +L Sbjct: 196 KTAFQIGFIVFIPFLIIDMVVASTLMAMGMMMLSPMIISLPFKLMLFVLVDGWHLLIGSL 255 Query: 242 VKSF 245 +SF Sbjct: 256 TQSF 259 >gi|113969635|ref|YP_733428.1| flagellar biosynthesis protein FliP [Shewanella sp. MR-4] gi|113884319|gb|ABI38371.1| flagellar biosynthetic protein FliP [Shewanella sp. MR-4] Length = 248 Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 86/201 (42%), Positives = 134/201 (66%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T LS P ++IM+T F R I+V SILR +G+ P N V+I ++LFMTF++M+P D Sbjct: 51 LMTSLSFIPAMVIMLTSFTRIIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFD 110 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + + G++P ++ Q+T A + EP FM R DL F+D+ S ++N I Sbjct: 111 KIYDQGVKPYIDEQLTLQQAFDKGKEPLRAFMLGQVRTTDLKTFIDI--SGYQN--INSP 166 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + +L+P+F+ SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK Sbjct: 167 EEAPMSVLVPAFITSELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFK 226 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW L++ L SF Sbjct: 227 IMLFVLVDGWGLVMGTLANSF 247 >gi|160939626|ref|ZP_02086974.1| hypothetical protein CLOBOL_04518 [Clostridium bolteae ATCC BAA-613] gi|158437417|gb|EDP15181.1| hypothetical protein CLOBOL_04518 [Clostridium bolteae ATCC BAA-613] Length = 258 Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 86/203 (42%), Positives = 135/203 (66%), Gaps = 2/203 (0%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 +F L++ P L+IM+T F R +IV S LR +G PPN +++ LALF+T ++MSP + Sbjct: 55 LFLFLAVVPSLIIMMTSFTRIVIVLSFLRNALGTQQSPPNQILVGLALFLTLFIMSPVIA 114 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 QP QIT A +R EP FM T +K L LF+ ++ + + + Sbjct: 115 SVNTQAYQPYREGQITREQAFERAQEPMKEFMLKQTEKKSLDLFLSISKAQPPDISQGQE 174 Query: 165 DHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222 +++ + ++PSF++SEL ++F +GFLI +PFLIID++V++ +M+MGM+MLPPT I+LP Sbjct: 175 GYMKLGLTTIVPSFILSELNKAFTMGFLIFIPFLIIDLVVSSTLMSMGMVMLPPTMIALP 234 Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245 FK++ FVL+DGWSL+++ LV+SF Sbjct: 235 FKIMMFVLVDGWSLVIKTLVQSF 257 >gi|56460298|ref|YP_155579.1| flagellar biosynthesis protein FliP [Idiomarina loihiensis L2TR] gi|56179308|gb|AAV82030.1| Flagellar biosynthesis protein FliP [Idiomarina loihiensis L2TR] Length = 248 Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 94/243 (38%), Positives = 147/243 (60%), Gaps = 6/243 (2%) Query: 5 CFFALFLVTPELVFAKSSLH--DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCF 62 C A+ + PE FA L V P + ++ I T L+ P ++IM+T F Sbjct: 8 CILAVLCLLPEQAFAWQDLTAVTVKTNPDGSEEYSVTLQILAIMTALTFIPAMVIMMTSF 67 Query: 63 PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122 R IIV +ILR +G+ P N V++ +ALF++F++M+P L+ + +QP +N +I Sbjct: 68 TRIIIVLAILRQAIGLQQSPSNQVLLGIALFLSFFIMTPVLNEINDKALQPYLNEEIQSM 127 Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182 A+ R P FM TR DL F++++ + + + + + +LIPSF+ SEL+ Sbjct: 128 EAVDRAKAPIKAFMLAQTRLTDLETFVEISGTEG----VQEPEDVPMSVLIPSFITSELK 183 Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242 +F+IGF++ +PFLIID++VA+++MAMGMMML P +SLPFK++ FVL+DGWSL + L Sbjct: 184 TAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWSLTMSTLA 243 Query: 243 KSF 245 SF Sbjct: 244 GSF 246 >gi|114046865|ref|YP_737415.1| flagellar biosynthesis protein FliP [Shewanella sp. MR-7] gi|113888307|gb|ABI42358.1| flagellar biosynthetic protein FliP [Shewanella sp. MR-7] Length = 248 Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 86/201 (42%), Positives = 134/201 (66%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T LS P ++IM+T F R I+V SILR +G+ P N V+I ++LFMTF++M+P D Sbjct: 51 LMTSLSFIPAMVIMLTSFTRIIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFD 110 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + + G++P ++ Q+T A + EP FM R DL F+D+ S ++N I Sbjct: 111 KIYDQGVKPYIDEQLTLQQAFDKGKEPLRAFMLGQVRTTDLKTFIDI--SGYQN--INSP 166 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + +L+P+F+ SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK Sbjct: 167 EEAPMSVLVPAFITSELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFK 226 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW L++ L SF Sbjct: 227 IMLFVLVDGWGLVMGTLANSF 247 >gi|332558490|ref|ZP_08412812.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides WS8N] gi|332276202|gb|EGJ21517.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides WS8N] Length = 267 Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 90/206 (43%), Positives = 135/206 (65%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + T L++ P L++ ++ F R IIV SILR +G PPN V+I+LALF+TF+VM Sbjct: 63 LQILALMTALTVLPSLVLGMSAFTRIIIVLSILRQALGTQQTPPNQVLIALALFLTFFVM 122 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 PTL E + P ++ QI AI+R F+ NTR+ DL +F D+A + Sbjct: 123 QPTLGALYEQSLSPFLDGQIEAQPAIERGGAIMKDFLIANTRQNDLLMFSDLAGAG---- 178 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + L+P+FM SEL+ +F+IGFL+ LPFL+IDM++A+I+MA+GMMML P + Sbjct: 179 PYAEPTEVPFSTLLPAFMTSELKTAFQIGFLLFLPFLVIDMVIASILMALGMMMLSPMLV 238 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW+L V +L S+ Sbjct: 239 SLPFKLLLFVLVDGWALTVGSLAASY 264 >gi|24374730|ref|NP_718773.1| flagellar biosynthesis protein FliP [Shewanella oneidensis MR-1] gi|24349390|gb|AAN56217.1|AE015759_9 flagellar biosynthetic protein FliP [Shewanella oneidensis MR-1] Length = 247 Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 86/199 (43%), Positives = 133/199 (66%), Gaps = 4/199 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T LS P ++IM+T F R I+V SILR +G+ P N V+I ++LFMTF++M+P D+ Sbjct: 52 TSLSFIPAMVIMLTSFTRIIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDKI 111 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 + G++P ++ Q+T A + EP FM R DL F+D+ S ++N I + Sbjct: 112 YDQGVKPYIDEQLTLQQAFDKGKEPLRAFMLGQVRTTDLKTFIDI--SGYQN--INSPEE 167 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 +L+P+F+ SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK++ Sbjct: 168 APMSVLVPAFITSELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIM 227 Query: 227 FFVLIDGWSLLVENLVKSF 245 FVL+DGW L++ L SF Sbjct: 228 LFVLVDGWGLVMGTLANSF 246 >gi|157737241|ref|YP_001489924.1| flagellar biosynthesis protein FliP [Arcobacter butzleri RM4018] gi|157699095|gb|ABV67255.1| flagellar biosynthetic protein FliP [Arcobacter butzleri RM4018] Length = 241 Score = 180 bits (457), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 89/188 (47%), Positives = 128/188 (68%), Gaps = 4/188 (2%) Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 MVT F R IIVFS+LR MG+ PP+ +IISL+L +T ++M P ++ + I P M+ Sbjct: 57 MVTSFTRLIIVFSLLRQAMGLQQTPPSQIIISLSLILTIFIMEPYAKKAWDDAIVPYMDE 116 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177 +I A + PF FM NTRE DL+LF + + + + + +L+P+F+ Sbjct: 117 KIGYEVAFDKGVAPFKEFMIKNTREADLALF----YRIKKEPNPKNIEAVPLTLLMPAFI 172 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 +SELR +FEIGFLI LPFL+ID+IVA+I+M++GMMMLPP ISLP K+IFF+++DGW L+ Sbjct: 173 VSELRTAFEIGFLIFLPFLVIDIIVASILMSLGMMMLPPVMISLPIKIIFFIVVDGWQLI 232 Query: 238 VENLVKSF 245 + NL +SF Sbjct: 233 IGNLAQSF 240 >gi|117919800|ref|YP_868992.1| flagellar biosynthesis protein FliP [Shewanella sp. ANA-3] gi|117612132|gb|ABK47586.1| flagellar biosynthetic protein FliP [Shewanella sp. ANA-3] Length = 248 Score = 180 bits (457), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 86/201 (42%), Positives = 134/201 (66%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T LS P ++IM+T F R I+V SILR +G+ P N V+I ++LFMTF++M+P D Sbjct: 51 LMTSLSFIPAMVIMLTSFTRIIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFD 110 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + + G++P ++ Q+T A + EP FM R DL F+D+ S ++N I Sbjct: 111 KIYDQGVKPYIDEQLTLQQAFDKGKEPLRAFMLGQVRTTDLKTFIDI--SGYQN--INSP 166 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + +L+P+F+ SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK Sbjct: 167 EEAPMSVLVPAFITSELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFK 226 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW L++ L SF Sbjct: 227 IMLFVLVDGWGLVMGTLANSF 247 >gi|225181595|ref|ZP_03735036.1| flagellar biosynthetic protein FliP [Dethiobacter alkaliphilus AHT 1] gi|225167703|gb|EEG76513.1| flagellar biosynthetic protein FliP [Dethiobacter alkaliphilus AHT 1] Length = 257 Score = 180 bits (457), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 84/193 (43%), Positives = 133/193 (68%), Gaps = 4/193 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P L ++T F R ++V +R + PPN VII LALF+TF++M+P + E IQ Sbjct: 68 PAFLALMTSFTRIVVVLGFVRNALATQQTPPNQVIIGLALFLTFFIMAPIYTQVNETAIQ 127 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P + +IT+ A+ A+P FM + TREKDL+LF+++++ T D + +L Sbjct: 128 PYLEEEITQEEALAIGAQPLREFMFHQTREKDLALFVNISNGERPET----RDDVPMHVL 183 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 +P+F+ISEL+ +F++GF++ +PF+IIDM+VA+ +M+MGM MLPP +SLPFK++ FV++D Sbjct: 184 VPAFVISELKTAFQMGFMLFIPFVIIDMVVASTLMSMGMFMLPPVMVSLPFKLLLFVMVD 243 Query: 233 GWSLLVENLVKSF 245 GW L+V++LV+SF Sbjct: 244 GWHLVVKSLVESF 256 >gi|242281272|ref|YP_002993401.1| flagellar biosynthesis protein FliP [Desulfovibrio salexigens DSM 2638] gi|242124166|gb|ACS81862.1| flagellar biosynthetic protein FliP [Desulfovibrio salexigens DSM 2638] Length = 252 Score = 180 bits (457), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 96/239 (40%), Positives = 146/239 (61%), Gaps = 8/239 (3%) Query: 11 LVTPELVFAKSSLHDV-MNIPADLSISTWIVRTFGIF---TILSIAPILLIMVTCFPRFI 66 L+ P FA+ ++ + +N+ A + + I TIL +AP +L+ +T F R I Sbjct: 17 LLIPAAAFAQETVPTLTLNLAAGQEEPEQVAKLLEILFLLTILGMAPSILLTMTSFTRII 76 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IVF LR MG +PPN ++ SLA+FMT +M PT + +QP +N +I + AI Sbjct: 77 IVFHFLRQAMGTQQMPPNQILASLAIFMTVVIMMPTGKAINDSALQPYLNEEIGFSEAID 136 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 R P F+ +TREKDLS+F + T + + +L+ ++ ISEL+ F Sbjct: 137 RAQVPIRTFLFKHTREKDLSIFYSITGEKRPET----KEDVNTMLLVAAYTISELKTGFT 192 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGFLI +PFLI+DM++A+I++AMGMMMLPP +SLPFK++ F+++DGWSLL ++V +F Sbjct: 193 IGFLIYVPFLILDMVIASILLAMGMMMLPPAMVSLPFKILLFIMVDGWSLLTGSIVNTF 251 >gi|59712449|ref|YP_205225.1| flagellar biosynthesis protein FliP [Vibrio fischeri ES114] gi|197336177|ref|YP_002156668.1| flagellar biosynthesis protein [Vibrio fischeri MJ11] gi|59480550|gb|AAW86337.1| flagellar biosynthesis protein FliP [Vibrio fischeri ES114] gi|197317667|gb|ACH67114.1| flagellar biosynthesis protein [Vibrio fischeri MJ11] Length = 289 Score = 180 bits (457), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 92/218 (42%), Positives = 139/218 (63%), Gaps = 8/218 (3%) Query: 28 NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87 N D S++ I+ G+ T+L P ++I++T F R ++V SILR MG+ P N VI Sbjct: 78 NGGEDYSVNLQIL---GLMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVI 134 Query: 88 ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147 I +A+F+TF++M+P D+ IQP +N +IT A P FM TR KDL Sbjct: 135 IGIAMFLTFFIMAPVFDKVNNTAIQPYINEEITAREAFDVAQVPMKEFMLAQTRVKDLET 194 Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 F++M+ N + + ++IP+F+ SEL+ +F+IGF++ LPFLIID++VA+++M Sbjct: 195 FVNMSGVEAENPE-----DVPITVVIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLM 249 Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 AMGMMML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 250 AMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287 >gi|315636956|ref|ZP_07892180.1| flagellar biosynthetic protein FliP [Arcobacter butzleri JV22] gi|315478786|gb|EFU69495.1| flagellar biosynthetic protein FliP [Arcobacter butzleri JV22] Length = 241 Score = 180 bits (457), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 89/188 (47%), Positives = 128/188 (68%), Gaps = 4/188 (2%) Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 MVT F R IIVFS+LR MG+ PP+ +IISL+L +T ++M P ++ + I P M+ Sbjct: 57 MVTSFTRLIIVFSLLRQAMGLQQTPPSQIIISLSLILTIFIMEPYAKKAWDDAIVPYMDE 116 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177 +I A + PF FM NTRE DL+LF + + + + + +L+P+F+ Sbjct: 117 KIGYEVAFDKGVAPFKEFMIKNTREADLALF----YRIKKEPNPKNIEAVPLTLLMPAFI 172 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 +SELR +FEIGFLI LPFL+ID+IVA+I+M++GMMMLPP ISLP K+IFF+++DGW L+ Sbjct: 173 VSELRTAFEIGFLIFLPFLVIDIIVASILMSLGMMMLPPVMISLPIKIIFFIVVDGWQLI 232 Query: 238 VENLVKSF 245 + NL +SF Sbjct: 233 IGNLAQSF 240 >gi|309779459|ref|ZP_07674220.1| flagellar biosynthetic protein FliP [Ralstonia sp. 5_7_47FAA] gi|308921700|gb|EFP67336.1| flagellar biosynthetic protein FliP [Ralstonia sp. 5_7_47FAA] Length = 249 Score = 180 bits (457), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 93/207 (44%), Positives = 135/207 (65%), Gaps = 4/207 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T T L P +++M++ F R IIV S+LR +G + PPN V+I LALF+TF+VM Sbjct: 46 VQTLVFLTSLGFLPAIILMMSSFTRIIIVLSLLRHALGTQTSPPNQVLIGLALFLTFFVM 105 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP LD+ PL +++IT A+ A P FM TRE DL+LF+ M + Sbjct: 106 SPVLDKVYTDAYVPLRDSKITVEQAMDTAATPLRQFMLKQTREPDLALFVKMGNMPA--- 162 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 I + R LIP+F+ SEL+ +F+IGF I +PFL+ID++VA ++M+MGMMM+ P+ Sbjct: 163 -IASPEQTPMRALIPAFVTSELKSAFQIGFAIFIPFLVIDIVVAAVLMSMGMMMVTPSIF 221 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246 SLPFK++ FVL+DGW LL+ +L +SF+ Sbjct: 222 SLPFKIMLFVLVDGWHLLLGSLAQSFV 248 >gi|229918642|ref|YP_002887288.1| flagellar biosynthetic protein FliP [Exiguobacterium sp. AT1b] gi|229470071|gb|ACQ71843.1| flagellar biosynthetic protein FliP [Exiguobacterium sp. AT1b] Length = 221 Score = 180 bits (457), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 93/224 (41%), Positives = 147/224 (65%), Gaps = 5/224 (2%) Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80 ++ ++N+ S ST I + + T+L++AP LI++TCF R ++V S +R +G Sbjct: 2 TTFEQLINLETPDSTSTSI-KLLILLTLLTLAPSFLILMTCFTRVVVVLSFIRPALGTQQ 60 Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140 PPN +I+ LALF+T +VMSP L E ++P ++++I++ A + FM T Sbjct: 61 TPPNQLIVGLALFITLFVMSPVLSDLNENALKPYLDDKISQDEAFDEASGTMKEFMSKYT 120 Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200 R++DL LF+ + T D + L+P++ ISEL+ +F+IGF+I LPFLIIDM Sbjct: 121 RQEDLQLFLKYGNYEQPET----LDDVPLLALVPAYAISELKTAFQIGFMIFLPFLIIDM 176 Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 +VA+++M+MGMMMLPP I+LPFK++ FVL+DGW L+VE+L++S Sbjct: 177 VVASVLMSMGMMMLPPVMIALPFKLLLFVLVDGWHLIVESLLRS 220 >gi|268316332|ref|YP_003290051.1| flagellar biosynthetic protein FliP [Rhodothermus marinus DSM 4252] gi|262333866|gb|ACY47663.1| flagellar biosynthetic protein FliP [Rhodothermus marinus DSM 4252] Length = 269 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 91/195 (46%), Positives = 141/195 (72%), Gaps = 4/195 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP ++I+ T F R +++FSILRT +G+ PP V+I LALF+T ++M P D+ + + Sbjct: 77 APAIIILTTSFTRLVVIFSILRTALGLQQSPPTQVLIGLALFLTLFIMYPVFDQIHDEAL 136 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 +P ++ +IT+ A++R A P FM TREKDL LFMD+A+ + + + + + I Sbjct: 137 RPYLDGEITQQVALERAAAPLRAFMLRQTREKDLMLFMDLANVEAFD----RPEDVPFYI 192 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 L+P+F+ISELR +F+IGF+I LPFL++D+IVA+++M+MGMMMLPP ISLP K++ FVL Sbjct: 193 LVPAFVISELRIAFQIGFMIFLPFLLVDLIVASVLMSMGMMMLPPVMISLPLKLLLFVLA 252 Query: 232 DGWSLLVENLVKSFI 246 DGW L+VE++V+ ++ Sbjct: 253 DGWYLVVESVVRGYL 267 >gi|253688962|ref|YP_003018152.1| flagellar biosynthetic protein FliP [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755540|gb|ACT13616.1| flagellar biosynthetic protein FliP [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 258 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 108/247 (43%), Positives = 158/247 (63%), Gaps = 10/247 (4%) Query: 2 IRYCF-FALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 +RY +L L+ P V+A+ L ++ P +W V+T T L+ P L+M Sbjct: 17 LRYGLAISLLLLAPS-VWAQ--LPGIVTQPLPNGGQSWTLSVQTLVFLTSLTFIPAALLM 73 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIV S+LR +G + PPN V++ L LF+TF+VMSP L+R E P +Q Sbjct: 74 MTSFTRIIIVLSLLRNALGTPTAPPNQVLLGLTLFLTFFVMSPVLNRVYEEAYLPFSQDQ 133 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ AI+R AEP FM TRE DL+LF +A +I + + R+L+P+F+ Sbjct: 134 ISMEVAIERGAEPVREFMLRQTRETDLALFTRLAEIP----EIQGPEAVPMRVLLPAFVT 189 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF I +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ Sbjct: 190 SELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLL 249 Query: 239 ENLVKSF 245 +L +SF Sbjct: 250 GSLAQSF 256 >gi|304409949|ref|ZP_07391568.1| flagellar biosynthetic protein FliP [Shewanella baltica OS183] gi|307302338|ref|ZP_07582096.1| flagellar biosynthetic protein FliP [Shewanella baltica BA175] gi|304351358|gb|EFM15757.1| flagellar biosynthetic protein FliP [Shewanella baltica OS183] gi|306914376|gb|EFN44797.1| flagellar biosynthetic protein FliP [Shewanella baltica BA175] Length = 248 Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 89/201 (44%), Positives = 135/201 (67%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T LS P +LIM+T F R IIV SILR +G+ P N V+I ++LFMTF++M+P + Sbjct: 51 LMTSLSFLPAMLIMLTSFTRIIIVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFE 110 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 R + G++P + Q+T A ++ EP FM R DL F+++ S ++N I Sbjct: 111 RIYDEGVKPYIEEQLTLQQAFEKGKEPLKGFMLGQVRTTDLKTFIEI--SGYKN--IKSP 166 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + +LIP+F+ SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK Sbjct: 167 EEAPMSVLIPAFITSELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFK 226 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGWSL++ L SF Sbjct: 227 IMLFVLVDGWSLVLGTLANSF 247 >gi|149908447|ref|ZP_01897110.1| flagellar biosynthesis protein [Moritella sp. PE36] gi|149808610|gb|EDM68545.1| flagellar biosynthesis protein [Moritella sp. PE36] Length = 248 Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 89/206 (43%), Positives = 134/206 (65%), Gaps = 5/206 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + T LS P LIM+T F R IIV SILR +G+ P N V++ + LF++F++M Sbjct: 46 LQILAMMTALSFLPAALIMMTSFTRIIIVLSILRQALGLQQSPSNQVLVGITLFLSFFIM 105 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP DR + +QP ++ ++T A ++ P FM TR DL FM +A Sbjct: 106 SPVFDRINDNALQPYLSEELTSMQAFEQAKLPMQQFMLAQTRVTDLDTFMRIAK-----V 160 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + +R+LIP+F+ SEL+ +F+IGF++ +PFLIID++VA+I+MAMGMMML P + Sbjct: 161 EADSPEEVPFRVLIPAFVTSELKTAFQIGFMVFIPFLIIDLVVASILMAMGMMMLSPMIV 220 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGWSL++ L SF Sbjct: 221 SLPFKLMLFVLVDGWSLILGTLANSF 246 >gi|307721191|ref|YP_003892331.1| flagellar biosynthetic protein FliP [Sulfurimonas autotrophica DSM 16294] gi|306979284|gb|ADN09319.1| flagellar biosynthetic protein FliP [Sulfurimonas autotrophica DSM 16294] Length = 245 Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 90/193 (46%), Positives = 132/193 (68%), Gaps = 4/193 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +++++T F RF+IVF LR +G VPP +++ LA+ +TF+VM P ++ GI Sbjct: 55 APAMVLVMTTFTRFVIVFGFLRQALGTQQVPPTQLLVMLAMILTFFVMEPIGTKAYNQGI 114 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 +P + +I A + PF FM NTREKDL+LF+ + + + + I Sbjct: 115 KPYVAKEIGYEEAFTKTTLPFKNFMIRNTREKDLALFLRIRKMQNPKSV----ADVPLSI 170 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 +IP+F+ISE++ +FEIGFL+ LPFL+IDM+VA+I+M+MGMMMLPP ISLPFK++ FVLI Sbjct: 171 VIPAFIISEMKTAFEIGFLLFLPFLVIDMVVASILMSMGMMMLPPVMISLPFKILVFVLI 230 Query: 232 DGWSLLVENLVKS 244 DGW+LL+ NL+ S Sbjct: 231 DGWNLLIGNLIFS 243 >gi|269792928|ref|YP_003317832.1| flagellar biosynthetic protein FliP [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100563|gb|ACZ19550.1| flagellar biosynthetic protein FliP [Thermanaerovibrio acidaminovorans DSM 6589] Length = 247 Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 92/215 (42%), Positives = 142/215 (66%), Gaps = 9/215 (4%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D++++ IV + T+LS+AP +++M+T F R ++V +R MG+ +PPN VI SLA Sbjct: 40 DVALTLQIV---ALMTVLSMAPAIILMLTSFTRILVVLGFVRNAMGLQQMPPNQVIASLA 96 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 LF+TF+ MSP D+ + + P M +I+ A V P FM TRE +LSL + + Sbjct: 97 LFLTFFTMSPVWDQVYKGALVPYMRGEISAQRAFDGVEGPVRAFMLRQTREPELSLMVRL 156 Query: 152 AHSSHRNTDITKN-DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 A KN + R+LIP+F+ISEL+ +F++G +I +PF+++DMIV++++M+MG Sbjct: 157 AKMKQ-----PKNPSEVPTRVLIPAFVISELKTAFQMGVVIFIPFIVVDMIVSSVLMSMG 211 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+MLPP ISLPFKV+ FV+ DGW L++ +LV SF Sbjct: 212 MIMLPPMMISLPFKVLLFVMADGWDLVIASLVSSF 246 >gi|239909255|ref|YP_002955997.1| flagellar biosynthetic protein FliP [Desulfovibrio magneticus RS-1] gi|239799122|dbj|BAH78111.1| flagellar biosynthetic protein FliP [Desulfovibrio magneticus RS-1] Length = 253 Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 92/199 (46%), Positives = 133/199 (66%), Gaps = 4/199 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T+LS+AP ++ VT F R I+VFS LR MG+ VPP ++ SLA+F+T +M PT Sbjct: 56 TVLSLAPSFVLTVTSFTRIIVVFSFLRQAMGVQQVPPTQILASLAIFLTAVIMYPTGKAI 115 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 + +QP MN +I T A+++ P F+ +TREKDLS+F + R D Sbjct: 116 NDNALQPYMNEEIGFTEALKKAEAPLREFLFKHTREKDLSVFYTITKM-ERPKD---KGE 171 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 + +L FMISEL+ +F IGFLI +PFLI+DM++++I++AMGMMMLPP +I++PFK++ Sbjct: 172 VPTIMLAAGFMISELKTAFTIGFLIYIPFLILDMVISSILLAMGMMMLPPATIAMPFKLL 231 Query: 227 FFVLIDGWSLLVENLVKSF 245 FVL+DGW L+V +LV SF Sbjct: 232 LFVLVDGWGLIVASLVNSF 250 >gi|88813211|ref|ZP_01128451.1| flagellar biosynthesis protein [Nitrococcus mobilis Nb-231] gi|88789533|gb|EAR20660.1| flagellar biosynthesis protein [Nitrococcus mobilis Nb-231] Length = 245 Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 98/246 (39%), Positives = 150/246 (60%), Gaps = 6/246 (2%) Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMV 59 +R + L P + A+ + + + + + TW V + + T L++ P L+M+ Sbjct: 1 MRALLMVVLLWVPGVALAQGTGIEAVTVQSAGDGETWSVSLQILAVMTALTLLPAALLMM 60 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R IIV +ILR +G S P N V+I LALF+T +VMSP L + E+ +QP +N + Sbjct: 61 TAFTRIIIVLAILRQAIGTTSTPSNQVLIGLALFLTVFVMSPVLTQINEVALQPYLNEGM 120 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 A++ A P FM TREKD+ LF+++A + + + + L+P+FM S Sbjct: 121 DAEQAVRAAAGPLRAFMLAQTREKDIGLFLNIADAGP----VASPQEVPFSTLVPAFMTS 176 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL +F+IGF++ LPFL+ID++VA+ +M+MGM+ML P ISLPFK++ FVLIDGWSL++ Sbjct: 177 ELETAFQIGFIVFLPFLVIDLVVASTLMSMGMLMLSPMLISLPFKIMLFVLIDGWSLIMG 236 Query: 240 NLVKSF 245 L SF Sbjct: 237 TLAGSF 242 >gi|254438171|ref|ZP_05051665.1| flagellar biosynthetic protein FliP [Octadecabacter antarcticus 307] gi|198253617|gb|EDY77931.1| flagellar biosynthetic protein FliP [Octadecabacter antarcticus 307] Length = 258 Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 95/251 (37%), Positives = 151/251 (60%), Gaps = 17/251 (6%) Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI---------VRTFGIFTILSIAPIL 55 C F + P F D +PA L+IST ++ + T+L+I P Sbjct: 15 CVILAFCIVP---FGSVYAQDGGGLPA-LNISTGADGETTYSLSLQILALMTVLTILPSF 70 Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115 L+ VT F R IIV SILR +G PPN V++S+ALF+TFYVM+PT + I P + Sbjct: 71 LLGVTAFTRIIIVLSILRQALGTQQTPPNQVLLSIALFLTFYVMAPTFEDIYNNAISPYL 130 Query: 116 NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPS 175 + AI+ A F+ NTRE +L++F +MA + N+ + Y +L+P+ Sbjct: 131 AGDLPPVAAIEGAAGILSEFLVVNTREAELAMFAEMAG----DEPYASNEDVPYTVLLPA 186 Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235 F+ SEL+ +F+IGFL+ LPFL+ID+++A+I+M++GMMML P ++LPFK++ FVL+DGW+ Sbjct: 187 FITSELKTAFQIGFLLFLPFLVIDLVIASILMSLGMMMLSPMLVALPFKLLLFVLVDGWA 246 Query: 236 LLVENLVKSFI 246 + + ++ +++ Sbjct: 247 MTIGSIASTYV 257 >gi|126730033|ref|ZP_01745845.1| flagellar biosynthetic protein FliP [Sagittula stellata E-37] gi|126709413|gb|EBA08467.1| flagellar biosynthetic protein FliP [Sagittula stellata E-37] Length = 245 Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 89/194 (45%), Positives = 126/194 (64%), Gaps = 3/194 (1%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP + IMVTCFP + V +ILR +G+ PPN++I+SLALF+T++VM P + + G+ Sbjct: 54 APGIAIMVTCFPFMVTVLAILRQAVGLQQSPPNMLIVSLALFLTYFVMEPVFTEAWDTGV 113 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 QPL+ QI A R PF FM T D+ R T + + + Sbjct: 114 QPLIEEQIEVEEAAIRTLAPFRDFMAGRTDPDTYRAMADL-RPDARETVLAPEAPLS--V 170 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 L+PSFM+SE+ R+F++GFLI LPFLIID++VA ++M+MGMMM+PP +SLPFK+ FFV+ Sbjct: 171 LVPSFMLSEVARAFQVGFLIFLPFLIIDLVVAAVLMSMGMMMVPPAIVSLPFKLAFFVVA 230 Query: 232 DGWSLLVENLVKSF 245 DGWSLL +LV+ + Sbjct: 231 DGWSLLAGSLVRGY 244 >gi|51246523|ref|YP_066407.1| flagellar biosynthesis protein FliP [Desulfotalea psychrophila LSv54] gi|50877560|emb|CAG37400.1| probable flagellar biosynthetic protein (FliP) [Desulfotalea psychrophila LSv54] Length = 260 Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 87/201 (43%), Positives = 139/201 (69%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + TI+S+AP +++M+TCF R +IV +R MG ++PPN ++I ALF+TF++MSPT++ Sbjct: 63 VLTIISVAPAIVLMMTCFTRIVIVLGFVRQAMGTQNMPPNQIVIGFALFLTFFIMSPTIN 122 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + + +QP + +I++ A+ FM + +E +LS MA + K Sbjct: 123 KINDTALQPYLAKEISQGKALDLTVFSMREFMFSQVQESELSF---MAELTIEKEPKDKA 179 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D I LIP++M+SEL+ +F +GF++ +PFL+IDMIVA+++M+MGMMMLPP IS+PFK Sbjct: 180 D-IPTTTLIPAYMLSELKTAFSMGFMVYIPFLVIDMIVASVLMSMGMMMLPPVIISMPFK 238 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ F+L+DGW+L+V +LVKSF Sbjct: 239 LLLFILVDGWTLIVGSLVKSF 259 >gi|221069288|ref|ZP_03545393.1| flagellar biosynthetic protein FliP [Comamonas testosteroni KF-1] gi|220714311|gb|EED69679.1| flagellar biosynthetic protein FliP [Comamonas testosteroni KF-1] Length = 249 Score = 179 bits (455), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 89/206 (43%), Positives = 137/206 (66%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++T FT LS P +L+++T F R +IV S+LR +G S PPN V+I L+LF+T +VM Sbjct: 46 IQTLLFFTALSFLPAILLLMTGFTRIVIVLSLLRQALGTQSAPPNQVVIGLSLFLTMFVM 105 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 PTLD+ + P N I+ AI++ P FM TR+ D +LF +A + Sbjct: 106 GPTLDKVYQDAYLPYTQNSISFEQAIEKAEAPMRGFMLKQTRQSDFALFKRLAK---LDA 162 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 ++T + R+L+P+F+ SEL+ +F+IGF+I +PFLIIDM+V++I+M++GMMML P + Sbjct: 163 NVTA-ETAPLRVLVPAFVTSELKTAFQIGFMIFIPFLIIDMVVSSILMSLGMMMLSPVLV 221 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 +LPFK++ FVL DGW+L++ +L SF Sbjct: 222 ALPFKLMLFVLADGWNLIIGSLAASF 247 >gi|261252332|ref|ZP_05944905.1| flagellar biosynthesis protein FliP [Vibrio orientalis CIP 102891] gi|260935723|gb|EEX91712.1| flagellar biosynthesis protein FliP [Vibrio orientalis CIP 102891] Length = 275 Score = 179 bits (455), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 88/206 (42%), Positives = 137/206 (66%), Gaps = 5/206 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + T+L P ++I++T F R ++V SILR MG+ P N VII +A+F+TF++M Sbjct: 73 LQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIAIFLTFFIM 132 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP L++ + IQP +N QI+ A P FM TR KDL F++++ S+ Sbjct: 133 SPVLNKINDDAIQPYINEQISARQAFDLAQIPMKDFMLKQTRVKDLETFVNISGSTA--- 189 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 T + + +LIP+F+ SEL+ +F+IGF++ LPFL+ID++VA+++MAMGMMML P + Sbjct: 190 --TAPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLVIDLVVASVLMAMGMMMLSPMIV 247 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW+L++ L SF Sbjct: 248 SLPFKLMLFVLVDGWNLILSTLAGSF 273 >gi|310816848|ref|YP_003964812.1| flagellar biosynthesis protein FliP [Ketogulonicigenium vulgare Y25] gi|308755583|gb|ADO43512.1| flagellar biosynthesis protein FliP [Ketogulonicigenium vulgare Y25] Length = 244 Score = 179 bits (455), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 98/243 (40%), Positives = 148/243 (60%), Gaps = 9/243 (3%) Query: 8 ALFLVTPELVFAKSSLH--DVMNIPADL---SISTWIVRTFGIFTILSIAPILLIMVTCF 62 ALF V L+ + D+ ++ D S++ V+ + T++S+ P L IM T F Sbjct: 5 ALFSVALTLLAGAAGAQGVDIQSLGLDFGEGSVAGRSVQLLVMVTLISLVPALAIMFTSF 64 Query: 63 PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122 P + V SILR G+G PPN++I++LALF+T+YVM+P D + GI PL+ +++ Sbjct: 65 PFMVTVLSILRQGLGTQQSPPNMLIVTLALFLTWYVMAPVFDEAWANGIAPLLEDRLPVD 124 Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182 A++ PF FM D + + MA + D L+PSF++SEL Sbjct: 125 AALRAAMAPFQTFMSGRV---DPTTYQTMASLRPDTVGVAVTDA-PLSTLVPSFLLSELS 180 Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242 R+F+IGFLI LPFLIID++VA ++M+MGMMM+PP ++LPFK+ FFV+ DGWSLL +LV Sbjct: 181 RAFQIGFLIFLPFLIIDLVVAAVLMSMGMMMVPPAVVALPFKLAFFVVADGWSLLASSLV 240 Query: 243 KSF 245 +++ Sbjct: 241 RNY 243 >gi|239815267|ref|YP_002944177.1| flagellar biosynthetic protein FliP [Variovorax paradoxus S110] gi|239801844|gb|ACS18911.1| flagellar biosynthetic protein FliP [Variovorax paradoxus S110] Length = 326 Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 90/200 (45%), Positives = 135/200 (67%), Gaps = 4/200 (2%) Query: 46 FTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDR 105 T+L+I P LL+ +T F R I+V S+LR +GM PPN V+I LALF+T + MSP L + Sbjct: 130 LTVLAILPALLVCLTSFLRIIVVLSMLRHAIGMNETPPNTVLIGLALFLTLFTMSPVLQK 189 Query: 106 SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165 + +P M +++ + P FM TRE DL+L ++++ + + + Sbjct: 190 VNQDAFEPFMAGKLSMQDGYGKGIAPLREFMVRQTREADLALMVELSKAPTPKS----ME 245 Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225 I LIPSFM+SELR +F+IGF+I LPFL+ID+IV++I+MA+GMMM+PPT+I+LP K+ Sbjct: 246 DISNVQLIPSFMLSELRAAFQIGFVIFLPFLLIDLIVSSILMALGMMMMPPTTIALPLKI 305 Query: 226 IFFVLIDGWSLLVENLVKSF 245 + F+L+DGWSL+++ LV SF Sbjct: 306 LMFILVDGWSLVLKALVGSF 325 >gi|332140592|ref|YP_004426330.1| flagellar biosynthesis protein FliP [Alteromonas macleodii str. 'Deep ecotype'] gi|327550614|gb|AEA97332.1| flagellar biosynthesis protein FliP [Alteromonas macleodii str. 'Deep ecotype'] Length = 251 Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 88/209 (42%), Positives = 136/209 (65%), Gaps = 3/209 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 T ++ I T LS+ P ++M+T F R I+V SILR +G+ P N ++I ++LF++ Sbjct: 42 TMTLQALFIMTALSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSM 101 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 ++M+P + E +QP +N Q+T A+++ P FM + TR KDL F+ +A Sbjct: 102 FIMAPVFEEVNERALQPYLNEQLTSLDALEQAKGPMRAFMLSQTRVKDLETFVRIAGDEG 161 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 + D D + ILIP+F+ SEL+ +F+IGF++ +PFLIID++VA+I+MAMGMMML P Sbjct: 162 KYAD---TDEVPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVASILMAMGMMMLSP 218 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +SLPFK++ FVL+DGW+L+ L SF Sbjct: 219 MIVSLPFKLMLFVLVDGWNLIFGTLATSF 247 >gi|308048762|ref|YP_003912328.1| flagellar biosynthetic protein FliP [Ferrimonas balearica DSM 9799] gi|307630952|gb|ADN75254.1| flagellar biosynthetic protein FliP [Ferrimonas balearica DSM 9799] Length = 251 Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 85/206 (41%), Positives = 139/206 (67%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ G+ T+L+ P ++I++T F R I+V +ILR +G+ P N V++ +ALF++ ++M Sbjct: 45 LQILGLMTLLTFLPAMVILMTSFTRIIVVLAILRQALGLQQTPSNQVLLGMALFLSLFIM 104 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +P LDR E + P M QI A++R P FM + TR D++ F++++ T Sbjct: 105 TPVLDRVYEDALVPYMGEQIGALEAMERAKAPVKDFMLSQTRITDINTFVEISG----RT 160 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 DI D + +LIP+F+ SEL+ +F+IGF++ +PFL+ID++VA+++MAMGMMML P + Sbjct: 161 DIASVDEVPMTVLIPAFVTSELKTAFQIGFMLFVPFLVIDLVVASVLMAMGMMMLSPMIV 220 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW+L++ L SF Sbjct: 221 SLPFKIMLFVLVDGWNLVMGTLATSF 246 >gi|284041537|ref|YP_003391877.1| flagellar biosynthetic protein FliP [Conexibacter woesei DSM 14684] gi|283945758|gb|ADB48502.1| flagellar biosynthetic protein FliP [Conexibacter woesei DSM 14684] Length = 213 Score = 179 bits (454), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 92/202 (45%), Positives = 137/202 (67%), Gaps = 6/202 (2%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 G FT++ P L +T F R +IV +RT +G + PPN V++ +ALF+T +VM+PT Sbjct: 17 GAFTLI---PAGLFCLTGFTRILIVLGFIRTAIGTPTAPPNQVLVGIALFLTLFVMAPTF 73 Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163 + E PL +I A++R EP FM TR KDL+LF+ ++ + R T+ Sbjct: 74 TQIKETAWDPLEAGRINTAQAVRRAEEPLRQFMFEQTRTKDLALFVRLSRT--REQPRTR 131 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 D I +LIP+F++SEL+ +F+IGF+I LPFL+ID+IVA+ +M+MGM+MLPP ISLPF Sbjct: 132 AD-IPTTVLIPAFIVSELKTAFQIGFMIFLPFLVIDLIVASTLMSMGMIMLPPVFISLPF 190 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K++ FVL+DGW+L+ ++LV+SF Sbjct: 191 KILLFVLVDGWALITDSLVRSF 212 >gi|167040314|ref|YP_001663299.1| flagellar biosynthesis protein FliP [Thermoanaerobacter sp. X514] gi|256750756|ref|ZP_05491641.1| flagellar biosynthetic protein FliP [Thermoanaerobacter ethanolicus CCSD1] gi|300914398|ref|ZP_07131714.1| flagellar biosynthetic protein FliP [Thermoanaerobacter sp. X561] gi|307724366|ref|YP_003904117.1| flagellar biosynthetic protein FliP [Thermoanaerobacter sp. X513] gi|166854554|gb|ABY92963.1| flagellar biosynthetic protein FliP [Thermoanaerobacter sp. X514] gi|256750339|gb|EEU63358.1| flagellar biosynthetic protein FliP [Thermoanaerobacter ethanolicus CCSD1] gi|300889333|gb|EFK84479.1| flagellar biosynthetic protein FliP [Thermoanaerobacter sp. X561] gi|307581427|gb|ADN54826.1| flagellar biosynthetic protein FliP [Thermoanaerobacter sp. X513] Length = 221 Score = 179 bits (454), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 87/194 (44%), Positives = 133/194 (68%), Gaps = 5/194 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +LIM+T F R +IV S LR +G+ +PPN V+I LALF+T ++M+P I Sbjct: 32 APSILIMMTSFTRIVIVLSFLRNALGLQQMPPNQVLIGLALFLTLFIMAPIGQDINNNAI 91 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 +P +IT+ A Q +P FM TR+ DL+LF+ +A + N + + R+ Sbjct: 92 KPYTEGKITQEEAYQNTIKPLKNFMLKQTRQNDLNLFVSLAKININNVE-----ELPMRV 146 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 +IP+F+ISEL+ +F+IGF++ +PFLIID++VA+++M+MGM MLPP ISLPFKV+ F+L+ Sbjct: 147 VIPAFIISELKTAFQIGFILYIPFLIIDIVVASVLMSMGMFMLPPVLISLPFKVLLFILV 206 Query: 232 DGWSLLVENLVKSF 245 DGW+L+V++L+ F Sbjct: 207 DGWNLVVKSLILGF 220 >gi|7387672|sp|O85133|FLIP_RHOSH RecName: Full=Flagellar biosynthetic protein fliP gi|3435109|gb|AAC32322.1| flagellar protein FliP [Rhodobacter sphaeroides] Length = 301 Score = 179 bits (454), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 90/206 (43%), Positives = 135/206 (65%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + T L++ P L++ ++ F R IIV SILR +G PPN V+I+LALF+TF+VM Sbjct: 97 LQILALMTALTVLPSLVLGMSAFTRIIIVLSILRQALGTQQTPPNQVLIALALFLTFFVM 156 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 PTL E + P ++ QI AI+R F+ NTR+ DL +F D+A + Sbjct: 157 QPTLGALYEQSLSPFLDGQIEAQPAIERGGAIMKDFLIANTRQNDLLMFSDLAGAG---- 212 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + L+P+FM SEL+ +F+IGFL+ LPFL+IDM++A+I+MA+GMMML P + Sbjct: 213 PYAEPTEVPFSTLLPAFMTSELKTAFQIGFLLFLPFLVIDMVIASILMALGMMMLSPMLV 272 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW+L V +L S+ Sbjct: 273 SLPFKLLLFVLVDGWALTVGSLAASY 298 >gi|302387779|ref|YP_003823601.1| flagellar biosynthetic protein FliP [Clostridium saccharolyticum WM1] gi|302198407|gb|ADL05978.1| flagellar biosynthetic protein FliP [Clostridium saccharolyticum WM1] Length = 220 Score = 179 bits (454), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 93/223 (41%), Positives = 145/223 (65%), Gaps = 9/223 (4%) Query: 27 MNIPADLSISTWIVRTFGIF---TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPP 83 MN A ++I+ V T +F TI+S+ P +L+M+T F R +I+ S R MG+ PP Sbjct: 1 MNTDALVNINGGRVPTLELFLILTIISLLPSILVMMTSFTRIVIILSFTRNAMGIQQTPP 60 Query: 84 NLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREK 143 N+V++ +ALF+T ++M P + QP + +I++ A++R P FM T + Sbjct: 61 NMVLVGIALFLTLFIMDPVIKDVNTNAYQPYIKEEISQGEALKRAQVPMKRFMLKQTEKT 120 Query: 144 DLSLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202 L+LF DM+ NTD+ +N + + ++IPSFM SEL+R+F GF+I LPF+++D++V Sbjct: 121 TLTLFTDMS-----NTDMPENIEDLPMTVVIPSFMTSELKRAFTAGFMIFLPFMLVDIVV 175 Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++ +M+MGM+MLPP ISLPFK++ FV ++GW LL NLVKSF Sbjct: 176 SSTLMSMGMVMLPPAMISLPFKLLLFVTVNGWELLFTNLVKSF 218 >gi|313901464|ref|ZP_07834920.1| flagellar biosynthetic protein FliP [Thermaerobacter subterraneus DSM 13965] gi|313468270|gb|EFR63728.1| flagellar biosynthetic protein FliP [Thermaerobacter subterraneus DSM 13965] Length = 227 Score = 179 bits (453), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 84/194 (43%), Positives = 131/194 (67%), Gaps = 4/194 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP LL+M+T F R ++ S LR +G PPN V++ LALF+T +VM+P + + Sbjct: 34 APALLVMMTGFTRIVVALSFLRGALGTQQAPPNQVLVGLALFLTVFVMAPVWQQVYQDAW 93 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 P + +I + A+QR EP FM TRE+DL+LF++++ + D + + Sbjct: 94 IPYRDGRIGQVEALQRAQEPVREFMFRYTRERDLALFLELSGRG----PVASPDQVPTYV 149 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 LIP+F ISEL+ +F+IGF++ +PFL+IDM+VA+ +M+MGM+M+PP +SLPFK++ FVL+ Sbjct: 150 LIPAFAISELKTAFQIGFILYVPFLVIDMVVASTLMSMGMLMVPPMLVSLPFKILLFVLV 209 Query: 232 DGWSLLVENLVKSF 245 DGW+L+V +L+ SF Sbjct: 210 DGWNLVVRSLLASF 223 >gi|264676604|ref|YP_003276510.1| flagellar biosynthetic protein FliP [Comamonas testosteroni CNB-2] gi|262207116|gb|ACY31214.1| flagellar biosynthetic protein FliP [Comamonas testosteroni CNB-2] Length = 249 Score = 179 bits (453), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 87/206 (42%), Positives = 137/206 (66%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++T FT LS P +L+++T F R +IV S+LR +G S PPN V+I L+LF+T +VM Sbjct: 46 IQTLLFFTALSFLPAILLLMTGFTRIVIVLSLLRQALGTQSAPPNQVVIGLSLFLTMFVM 105 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 PTLD+ + P N I+ A+++ P FM TR+ D +LF +A + Sbjct: 106 GPTLDKVYQDAYLPYTQNSISFEQAMEKAEAPMRGFMLKQTRQSDFALFKRLAK---LDA 162 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 ++T + R+L+P+F+ SEL+ +F+IGF+I +PFL+IDM+V++I+M++GMMML P + Sbjct: 163 NVTA-ETAPLRVLVPAFVTSELKTAFQIGFMIFIPFLVIDMVVSSILMSLGMMMLSPVLV 221 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 +LPFK++ FVL DGW+L++ +L SF Sbjct: 222 ALPFKLMLFVLADGWNLIIGSLAASF 247 >gi|261821163|ref|YP_003259269.1| flagellar biosynthesis protein FliP [Pectobacterium wasabiae WPP163] gi|261605176|gb|ACX87662.1| flagellar biosynthetic protein FliP [Pectobacterium wasabiae WPP163] Length = 258 Score = 179 bits (453), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 100/227 (44%), Positives = 147/227 (64%), Gaps = 6/227 (2%) Query: 21 SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 + L ++ P +W V+T T L+ P L+M+T F R IIV S+LR +G Sbjct: 34 AQLPGIVTQPLPNGGQSWTLPVQTLVFLTSLTFIPAALLMMTSFTRIIIVLSLLRNALGT 93 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 + PPN V++ L LF+TF+VMSP L+R E P +QI+ AI+R AEP FM Sbjct: 94 PTAPPNQVLLGLTLFLTFFVMSPVLNRVYEEAYLPFSQDQISMEVAIERGAEPVREFMLR 153 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 TRE DL+LF +A +I + + R+L+P+F+ SEL+ +F+IGF + +PFLII Sbjct: 154 QTRETDLALFTRLAEIP----EIQGPEAVPMRVLLPAFVTSELKTAFQIGFTVFIPFLII 209 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 D++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 210 DLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 256 >gi|299531251|ref|ZP_07044661.1| flagellar biosynthesis protein FliP [Comamonas testosteroni S44] gi|298720658|gb|EFI61605.1| flagellar biosynthesis protein FliP [Comamonas testosteroni S44] Length = 249 Score = 179 bits (453), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 87/206 (42%), Positives = 137/206 (66%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++T FT LS P +L+++T F R +IV S+LR +G S PPN V+I L+LF+T +VM Sbjct: 46 IQTLLFFTALSFLPAILLLMTGFTRIVIVLSLLRQALGTQSAPPNQVVIGLSLFLTMFVM 105 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 PTLD+ + P N I+ A+++ P FM TR+ D +LF +A + Sbjct: 106 GPTLDKVYQDAYLPYTQNSISFEQAMEKAEAPMRGFMLKQTRQSDFALFKRLAK---LDA 162 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 ++T + R+L+P+F+ SEL+ +F+IGF+I +PFL+IDM+V++I+M++GMMML P + Sbjct: 163 NVTA-ETAPLRVLVPAFVTSELKTAFQIGFMIFIPFLVIDMVVSSILMSLGMMMLSPVLV 221 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 +LPFK++ FVL DGW+L++ +L SF Sbjct: 222 ALPFKLMLFVLADGWNLIIGSLAASF 247 >gi|126462466|ref|YP_001043580.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides ATCC 17029] gi|126104130|gb|ABN76808.1| flagellar biosynthetic protein FliP [Rhodobacter sphaeroides ATCC 17029] Length = 301 Score = 178 bits (452), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 89/203 (43%), Positives = 133/203 (65%), Gaps = 4/203 (1%) Query: 43 FGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT 102 + T L++ P L++ ++ F R IIV SILR +G PPN V+I+LALF+TF+VM PT Sbjct: 100 LALMTALTVLPSLVLGMSAFTRIIIVLSILRQALGTQQTPPNQVLIALALFLTFFVMQPT 159 Query: 103 LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT 162 L E + P ++ QI AI+R F+ NTR+ DL +F D+A + Sbjct: 160 LGALYEQSLSPFLDGQIEAQPAIERGGAIMKDFLIANTRQNDLLMFSDLAGAG----PYA 215 Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222 + + + L+P+FM SEL+ +F+IGFL+ LPFL+IDM++A+I+MA+GMMML P +SLP Sbjct: 216 EPTEVPFSTLLPAFMTSELKTAFQIGFLLFLPFLVIDMVIASILMALGMMMLSPMLVSLP 275 Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245 FK++ FVL+DGW+L V +L ++ Sbjct: 276 FKLLLFVLVDGWALTVGSLAATY 298 >gi|224370774|ref|YP_002604938.1| FliP [Desulfobacterium autotrophicum HRM2] gi|223693491|gb|ACN16774.1| FliP [Desulfobacterium autotrophicum HRM2] Length = 258 Score = 178 bits (452), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 92/216 (42%), Positives = 141/216 (65%), Gaps = 7/216 (3%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P D+++ ++ + TIL++AP +LI++T F R I+VF LR +G S PPN V++ Sbjct: 48 PEDVAV---VLEIIALLTILALAPAILILMTPFTRIIVVFHFLRQAIGTQSSPPNQVVVG 104 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 LALF+TF+++ P + + P + QI A P F+ NTRE D++LF+ Sbjct: 105 LALFLTFFIIKPVALDVYQNALNPYLERQIDYNEAFTAAQVPIRNFLLVNTREADIALFV 164 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 A + +T + + +LIP+++ISEL+ +F IGF+I +PFL+IDM+VA++++AM Sbjct: 165 KGAGVAKPDT----REDVSLMLLIPAYVISELKTAFIIGFVIYVPFLVIDMVVASVLLAM 220 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMMLPP ISLPFK++ FVL+DGW LL +L+KSF Sbjct: 221 GMMMLPPVMISLPFKLMLFVLVDGWHLLTGSLLKSF 256 >gi|221635440|ref|YP_002523316.1| flagellar biosynthetic protein FliP [Thermomicrobium roseum DSM 5159] gi|221158046|gb|ACM07164.1| flagellar biosynthetic protein FliP [Thermomicrobium roseum DSM 5159] Length = 271 Score = 178 bits (452), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 86/201 (42%), Positives = 140/201 (69%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T++S+ P +LI++T F R +IV S +R+ +G+ +PPN V+I LALF+T +VM+PT Sbjct: 72 LLTLVSLLPTILIVMTSFTRIVIVLSFVRSAIGVPQLPPNQVLIGLALFLTVFVMAPTWQ 131 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 +QP + +I + TA++R +P FM TRE+D++LFM + + T Sbjct: 132 AVNRDALQPYLRGEINQRTALERGLQPLRTFMFRQTRERDIALFMSLGNLPRPRTP---- 187 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + + +L+P+F++SEL+ +F +GF++ +PFL+ID+IV++ +MAMGM+M+PP ISLPFK Sbjct: 188 EDVPTWVLVPAFILSELKTAFTMGFVLFIPFLVIDLIVSSTLMAMGMIMVPPVVISLPFK 247 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FV++DGW LLV +LV SF Sbjct: 248 LLLFVMVDGWDLLVRSLVVSF 268 >gi|117926839|ref|YP_867456.1| flagellar biosynthesis protein FliP [Magnetococcus sp. MC-1] gi|117610595|gb|ABK46050.1| flagellar biosynthetic protein FliP [Magnetococcus sp. MC-1] Length = 260 Score = 178 bits (452), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 100/216 (46%), Positives = 142/216 (65%), Gaps = 7/216 (3%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P +SI+ ++ T+ S+AP +L+MVT F R I+V S +R MG+ PPN V+I+ Sbjct: 51 PEQVSIA---LQILAFMTLFSLAPGILVMVTSFTRVIVVMSFVRQAMGLQGQPPNQVLIA 107 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 LALF+T +VM P +D+ + + P +N QI A P FM TRE DL LFM Sbjct: 108 LALFVTMFVMGPVMDKVWDTALNPYLNKQIGGEQAWDNAVIPVKDFMLRQTRESDLGLFM 167 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 +A + K D R++IP+FM+SEL+ +F+IGF++ LPFLI+DM+VA++VM+M Sbjct: 168 RLAGMEQ----VEKRDEAPLRLVIPAFMVSELKTAFQIGFMVYLPFLIVDMVVASVVMSM 223 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMMLPP IS+P K+I FVL+DGW L+V +LV+SF Sbjct: 224 GMMMLPPLVISMPIKLILFVLVDGWVLVVGSLVQSF 259 >gi|325295421|ref|YP_004281935.1| flagellar biosynthetic protein FliP [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065869|gb|ADY73876.1| flagellar biosynthetic protein FliP [Desulfurobacterium thermolithotrophum DSM 11699] Length = 242 Score = 178 bits (452), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 105/249 (42%), Positives = 165/249 (66%), Gaps = 12/249 (4%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMN--IP--ADLSISTWIVRTFGIFTILSIAPILL 56 M +Y A+ + L++ +S + +N +P +L I+ ++ + TILS+AP +L Sbjct: 1 MKKYSQVAIVAIAINLLYISTSYGETVNDFLPQLGNLDIT---LKILFLITILSLAPAIL 57 Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116 I VT F R +I+ S+LR +G PPN VII+L+LF+T + M+PT + E+ IQP +N Sbjct: 58 ITVTSFTRIVIILSLLRHALGTPQTPPNQVIIALSLFLTLFTMAPTFQQIDELAIQPYIN 117 Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176 +I++ AI+R +EP FM NTR++DL LF+D+ RN + I LIP+F Sbjct: 118 KKISDVEAIKRASEPIKNFMLRNTRKEDLKLFLDI-----RNEKPSSPQEISMLTLIPAF 172 Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236 M+SE+R + E+ F+I LPF++ID++VA+I+M+MGMMM+PP +SLPFK+I FVL DGW L Sbjct: 173 MVSEIRTALEVVFVIFLPFIVIDLLVASILMSMGMMMIPPMMLSLPFKLILFVLSDGWEL 232 Query: 237 LVENLVKSF 245 L+++++ S+ Sbjct: 233 LIKSIILSY 241 >gi|77463634|ref|YP_353138.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides 2.4.1] gi|77388052|gb|ABA79237.1| Flagellar transport protein FliP [Rhodobacter sphaeroides 2.4.1] Length = 301 Score = 178 bits (452), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 89/203 (43%), Positives = 133/203 (65%), Gaps = 4/203 (1%) Query: 43 FGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT 102 + T L++ P L++ ++ F R IIV SILR +G PPN V+I+LALF+TF+VM PT Sbjct: 100 LALMTALTVLPSLVLGMSAFTRIIIVLSILRQALGTQQTPPNQVLIALALFLTFFVMQPT 159 Query: 103 LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT 162 L E + P ++ QI AI+R F+ NTR+ DL +F D+A + Sbjct: 160 LGALYEQSLSPFLDGQIEAQPAIERGGAIMKDFLIANTRQNDLLMFSDLAGAG----PYA 215 Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222 + + + L+P+FM SEL+ +F+IGFL+ LPFL+IDM++A+I+MA+GMMML P +SLP Sbjct: 216 EPTEVPFSTLLPAFMTSELKTAFQIGFLLFLPFLVIDMVIASILMALGMMMLSPMLVSLP 275 Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245 FK++ FVL+DGW+L V +L ++ Sbjct: 276 FKLLLFVLVDGWALTVGSLAATY 298 >gi|125973002|ref|YP_001036912.1| flagellar biosynthesis protein FliP [Clostridium thermocellum ATCC 27405] gi|256004799|ref|ZP_05429774.1| flagellar biosynthetic protein FliP [Clostridium thermocellum DSM 2360] gi|281417213|ref|ZP_06248233.1| flagellar biosynthetic protein FliP [Clostridium thermocellum JW20] gi|125713227|gb|ABN51719.1| flagellar biosynthetic protein FliP [Clostridium thermocellum ATCC 27405] gi|255991249|gb|EEU01356.1| flagellar biosynthetic protein FliP [Clostridium thermocellum DSM 2360] gi|281408615|gb|EFB38873.1| flagellar biosynthetic protein FliP [Clostridium thermocellum JW20] gi|316940762|gb|ADU74796.1| flagellar biosynthetic protein FliP [Clostridium thermocellum DSM 1313] Length = 260 Score = 178 bits (452), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 96/219 (43%), Positives = 143/219 (65%), Gaps = 8/219 (3%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P D+S + I+ + TILS+AP +LIM+T F R IIV S R +G +PPN V+I Sbjct: 47 PQDVSTTIQIIV---LLTILSLAPSILIMMTSFVRIIIVLSFFRNAIGTQQMPPNQVLIG 103 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 LALF+T ++M P L E +P N +IT+ A++R ++ FM T + DL LF+ Sbjct: 104 LALFLTLFIMRPVLTEINETAFKPYTNQEITQEVALERSSDIIKRFMLKQTSKNDLGLFV 163 Query: 150 DMAHSSHRNTDITKND--HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 + S T I + D + I+IP+F+ISEL +F+IGFLI +PFL+IDM+V++ +M Sbjct: 164 SL---SGMETPIKEEDIPKLPLTIVIPAFIISELTIAFKIGFLIYIPFLVIDMVVSSTLM 220 Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +MGMMMLPP ISLPFK++ F+++ GW+L+ + +V SF+ Sbjct: 221 SMGMMMLPPVMISLPFKILLFIMVGGWNLMTQMIVNSFV 259 >gi|209695730|ref|YP_002263660.1| flagellar biosynthesis protein FliP [Aliivibrio salmonicida LFI1238] gi|208009683|emb|CAQ79982.1| polar flagellar assembly protein FliP [Aliivibrio salmonicida LFI1238] Length = 289 Score = 178 bits (451), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 86/206 (41%), Positives = 135/206 (65%), Gaps = 5/206 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ G+ T+L P ++I++T F R ++V SILR MG+ P N VII +A+F+TF++M Sbjct: 87 LQILGLMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIAMFLTFFIM 146 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +P D+ E IQP + +IT A P FM TR KDL F++M+ Sbjct: 147 APVFDKVNETAIQPYIGEEITAREAFDAAQIPMKEFMLAQTRVKDLETFVNMS-----GV 201 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 ++ + + ++IP+F+ SEL+ +F++GF++ LPFLIID++VA+++MAMGMMML P + Sbjct: 202 EVENPEDVPITVVIPAFITSELKTAFQMGFMLFLPFLIIDLVVASVLMAMGMMMLSPMIV 261 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW+L++ L SF Sbjct: 262 SLPFKLMLFVLVDGWNLILSTLAGSF 287 >gi|317151987|ref|YP_004120035.1| flagellar biosynthetic protein FliP [Desulfovibrio aespoeensis Aspo-2] gi|316942238|gb|ADU61289.1| flagellar biosynthetic protein FliP [Desulfovibrio aespoeensis Aspo-2] Length = 256 Score = 178 bits (451), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 102/247 (41%), Positives = 146/247 (59%), Gaps = 11/247 (4%) Query: 5 CFFALFLVTPELVFAKSSL--HDVMNIPADLS----ISTWIVRTFGIFTILSIAPILLIM 58 C F + P L A+ + M + A + +ST + F + T+LS+AP +++ Sbjct: 14 CLFGALALFPALSLAQDPVIPKLTMELAAGQAEPGEVSTLLEILF-LLTVLSMAPAIMLT 72 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIVF LR MG +PPN ++ LA+FMT +M P +QP + + Sbjct: 73 MTSFTRIIIVFHFLRQAMGTQQMPPNQILAGLAIFMTVVIMMPVGKAINSTALQPYLAEE 132 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I A++R P FM +TREKDLS+F + N D + +L+ ++ I Sbjct: 133 IRFDEALERAQVPIREFMFKHTREKDLSIFYSITKEERPN----NRDEVNTIMLVAAYTI 188 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ F IGFLI +PFLI+DM+VA+I++AMGMMMLPP ISLPFK++ FVLIDGW+LLV Sbjct: 189 SELKTGFTIGFLIYIPFLILDMVVASILLAMGMMMLPPVMISLPFKILLFVLIDGWNLLV 248 Query: 239 ENLVKSF 245 +LV +F Sbjct: 249 GSLVNTF 255 >gi|152965632|ref|YP_001361416.1| flagellar biosynthesis protein FliP [Kineococcus radiotolerans SRS30216] gi|151360149|gb|ABS03152.1| flagellar biosynthetic protein FliP [Kineococcus radiotolerans SRS30216] Length = 287 Score = 178 bits (451), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 84/200 (42%), Positives = 132/200 (66%), Gaps = 4/200 (2%) Query: 46 FTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDR 105 TILS+AP LL++ TCF + +IV + R +G+ PPN V+ LALF+T +VM+PT Sbjct: 90 LTILSVAPALLLLTTCFTKILIVLGLTRNALGLQGTPPNQVLAGLALFLTMFVMAPTFGA 149 Query: 106 SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165 + +QP + + T T A ++P FM TR ++L+L M ++ R+ T+ + Sbjct: 150 INDTAVQPYLKGEKTATVAFTDGSQPLKEFMLKQTRPEELAL---MTKAAKRDLPATR-E 205 Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225 L+P+F +SELR +F IGF+I +PFL+ID++V+ +M++GMMMLPP ++SLPFK+ Sbjct: 206 ETPLTTLVPAFALSELRSAFIIGFVIFIPFLVIDIVVSGALMSLGMMMLPPVTVSLPFKL 265 Query: 226 IFFVLIDGWSLLVENLVKSF 245 + FV+IDGW L+++ LV S+ Sbjct: 266 LLFVMIDGWGLIIKALVSSY 285 >gi|32490799|ref|NP_871053.1| flagellar biosynthesis protein FliP [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166005|dbj|BAC24196.1| fliP [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 263 Score = 178 bits (451), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 89/206 (43%), Positives = 138/206 (66%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T T L+ P L+++++ F R IIV SILR +G + PPN ++I L+L +T ++M Sbjct: 59 VQTLLFLTSLTFIPALILLMSSFTRIIIVLSILRNALGTPTAPPNQILIGLSLCLTIFIM 118 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP L++ P N+I AI +P FM + TREKDL+ + ++ ++ N+ Sbjct: 119 SPVLEKIYYDSYLPFYQNKINLQKAIIYAEQPIKEFMISQTREKDLAFYSKISKTNEINS 178 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + +ILIP+F+ SEL+ +F+IGF + +PFLIIDM+VA+I+MA+GMMMLPPT++ Sbjct: 179 P----KEVPIKILIPAFVTSELKTAFQIGFTLFIPFLIIDMVVASILMALGMMMLPPTTV 234 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FV+ DGW +L+ +LV+SF Sbjct: 235 SLPFKLMLFVMADGWQILLGSLVQSF 260 >gi|303246798|ref|ZP_07333075.1| flagellar biosynthetic protein FliP [Desulfovibrio fructosovorans JJ] gi|302491815|gb|EFL51695.1| flagellar biosynthetic protein FliP [Desulfovibrio fructosovorans JJ] Length = 252 Score = 178 bits (451), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 91/199 (45%), Positives = 134/199 (67%), Gaps = 4/199 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T+LS+AP ++ VT F R IIVFS LR MG+ VPP+ ++ SLA+F+T +M PT Sbjct: 56 TVLSLAPAFVLTVTSFTRIIIVFSFLRQAMGVPQVPPSQILASLAIFLTCVIMYPTGKAI 115 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 + +QP +N QI T A+++ P F+ +TREKDLS+F + R D Sbjct: 116 NDDALQPYLNEQIGFTEALKKAETPLREFLFKHTREKDLSVFYTVTKM-ERPKD---KAE 171 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 + +L F+ISEL+ +F IGFLI +PFLI+DM++++I++AMGMMMLPP +I++PFK++ Sbjct: 172 VPTTMLAAGFIISELKTAFTIGFLIYIPFLILDMVISSILLAMGMMMLPPATIAMPFKLL 231 Query: 227 FFVLIDGWSLLVENLVKSF 245 FVL+DGW L+V ++V SF Sbjct: 232 LFVLVDGWGLMVGSIVNSF 250 >gi|227112531|ref|ZP_03826187.1| flagellar biosynthesis protein FliP [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227328348|ref|ZP_03832372.1| flagellar biosynthesis protein FliP [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 258 Score = 177 bits (450), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 99/227 (43%), Positives = 148/227 (65%), Gaps = 6/227 (2%) Query: 21 SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 + L ++ P +W V+T + T L+ P L+M+T F R IIV S+LR +G Sbjct: 34 AQLPGIVTQPLPNGGQSWTLSVQTLVLLTSLTFIPAALLMMTSFTRIIIVLSLLRNALGT 93 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 + PPN V++ L LF+TF+VMSP L+R + P +QI+ AI+R AEP FM Sbjct: 94 PTAPPNQVLLGLTLFLTFFVMSPVLNRVYDEAYLPFSQDQISMEVAIERGAEPVREFMLR 153 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 TRE DL+LF +A +I + + R+L+P+F+ SEL+ +F+IGF + +PFLII Sbjct: 154 QTRETDLALFTRLAEIP----EIQGPEAVPMRVLLPAFVTSELKTAFQIGFTVFIPFLII 209 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 D++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 210 DLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 256 >gi|239628946|ref|ZP_04671977.1| flagellar biosynthesis protein FliP [Clostridiales bacterium 1_7_47_FAA] gi|239519092|gb|EEQ58958.1| flagellar biosynthesis protein FliP [Clostridiales bacterium 1_7_47FAA] Length = 255 Score = 177 bits (450), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 86/203 (42%), Positives = 133/203 (65%), Gaps = 2/203 (0%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 +F L++ P L+IM+T F R +IV S LR +G PPN +++ LALF+T ++M+P Sbjct: 52 LFLFLAVVPSLIIMMTSFTRIVIVLSFLRNALGTQQSPPNQILVGLALFLTLFIMAPVFT 111 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 QP + IT A R EP FM T +K L LF+ ++ + +T Sbjct: 112 SVNVQAYQPYKSGTITREEAFDRAQEPMKEFMLKQTEKKSLDLFLSISKTDPPDTSKGPE 171 Query: 165 DHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222 ++E + ++PSF++SEL ++F +GFLI +PFLIID++V++ +M+MGM+MLPPT I+LP Sbjct: 172 GYMELGLTTIVPSFILSELNKAFTMGFLIFIPFLIIDLVVSSTLMSMGMVMLPPTMIALP 231 Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245 FK++ FVL+DGWSL+++ LV+SF Sbjct: 232 FKIMMFVLVDGWSLVIKTLVQSF 254 >gi|462610|sp|P34200|FLIP_PECCC RecName: Full=Flagellar biosynthetic protein fliP; AltName: Full=Flagellar biosynthetic protein mopC gi|296055|emb|CAA51476.1| mopC [Pectobacterium carotovorum] Length = 258 Score = 177 bits (450), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 99/227 (43%), Positives = 148/227 (65%), Gaps = 6/227 (2%) Query: 21 SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 + L ++ P +W V+T + T L+ P L+M+T F R IIV S+LR +G Sbjct: 34 AQLPGIVTQPLPNGGQSWTLSVQTLVLLTSLTFLPAALLMMTSFTRIIIVLSLLRNALGT 93 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 + PPN V++ L LF+TF+VMSP L+R + P +QI+ AI+R AEP FM Sbjct: 94 PTAPPNQVLLGLTLFLTFFVMSPVLNRVYDEAYLPFSQDQISMEVAIERGAEPVREFMLR 153 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 TRE DL+LF +A +I + + R+L+P+F+ SEL+ +F+IGF + +PFLII Sbjct: 154 QTRETDLALFTRLAEIP----EIQGPEAVPMRVLLPAFVTSELKTAFQIGFTVFIPFLII 209 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 D++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 210 DLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 256 >gi|121533746|ref|ZP_01665573.1| flagellar biosynthetic protein FliP [Thermosinus carboxydivorans Nor1] gi|121307737|gb|EAX48652.1| flagellar biosynthetic protein FliP [Thermosinus carboxydivorans Nor1] Length = 253 Score = 177 bits (450), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 98/216 (45%), Positives = 147/216 (68%), Gaps = 7/216 (3%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P D+++S ++ T T+LS+AP +LIM+T F R IIV S LR+ + PPN V+I Sbjct: 44 PKDVALSLQVLFT---LTVLSLAPSILIMMTSFTRIIIVLSFLRSALATQQTPPNQVLIG 100 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 LALF+TFY MSP D+ + +QP + I++ TA+ +P FM TRE DL+LF+ Sbjct: 101 LALFLTFYTMSPYWDQINQNALQPYLAGTISQDTAMSEAMKPLRQFMLKQTRENDLALFV 160 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 +++ N+ + I LIP+F+ISEL+ +F+IGFLI +PF++IDM+VA+ +M+M Sbjct: 161 NLSEGPRPNSP----EDITTSTLIPAFIISELKTAFQIGFLIYIPFIVIDMVVASTLMSM 216 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMM+PP ISLPFK++ F+L+DGW L++ +L+ SF Sbjct: 217 GMMMVPPVMISLPFKLLLFILVDGWHLIIRSLITSF 252 >gi|289548901|ref|YP_003473889.1| flagellar biosynthetic protein FliP [Thermocrinis albus DSM 14484] gi|289182518|gb|ADC89762.1| flagellar biosynthetic protein FliP [Thermocrinis albus DSM 14484] Length = 236 Score = 177 bits (450), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 88/194 (45%), Positives = 137/194 (70%), Gaps = 4/194 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +LIM T F R +IV S+LR +G+ +VPPN VI+SLA+F+TF+VM PT D+ + + Sbjct: 46 APSILIMTTAFVRIVIVLSLLRQAIGVPTVPPNQVIVSLAMFLTFFVMKPTWDKINQQAL 105 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 QPL+N QIT+ ++R + FM NT+ + L F+ A + R ++ + + Sbjct: 106 QPLLNKQITDVEFLERTSSIMKEFMLRNTKRETLQAFLK-ASTVQRGEEV---RDVPMHV 161 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 LIP+FM+SE+ +F+I FL+ LPFLI+DM+VA+I+++MG++M+PP ISLPFK++ FVL Sbjct: 162 LIPAFMVSEISVAFQIVFLLYLPFLIVDMVVASILISMGVLMVPPQIISLPFKLMLFVLA 221 Query: 232 DGWSLLVENLVKSF 245 +GW L++ +LV+S+ Sbjct: 222 NGWELVILSLVRSY 235 >gi|239997094|ref|ZP_04717618.1| flagellar biosynthesis protein FliP [Alteromonas macleodii ATCC 27126] Length = 251 Score = 177 bits (450), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 86/201 (42%), Positives = 133/201 (66%), Gaps = 3/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 I T LS+ P ++M+T F R I+V SILR +G+ P N ++I ++LF++ ++M+P + Sbjct: 50 IMTALSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPVFE 109 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 E +QP +N Q+T A+++ P FM + TR KDL F+ +A + D Sbjct: 110 EVNERALQPYLNEQLTSLDALEQAKGPMRAFMLSQTRVKDLETFVRIAGDEGKYAD---T 166 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + + ILIP+F+ SEL+ +F+IGF++ +PFLIID++VA+I+MAMGMMML P +SLPFK Sbjct: 167 NEVPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVASILMAMGMMMLSPMIVSLPFK 226 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW+L+ L SF Sbjct: 227 LMLFVLVDGWNLIFGTLATSF 247 >gi|300311365|ref|YP_003775457.1| flagellar biosynthetic protein FliP [Herbaspirillum seropedicae SmR1] gi|300074150|gb|ADJ63549.1| flagellar biosynthetic protein FliP precursor protein [Herbaspirillum seropedicae SmR1] Length = 244 Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 96/221 (43%), Positives = 143/221 (64%), Gaps = 4/221 (1%) Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84 + M P + + ++T + T LS P L+M+TCF R +IV S+LR +G S PP Sbjct: 27 NSMPAPGGGTNYSLPIQTMLLLTSLSFLPAALLMMTCFTRIVIVLSLLRQALGTQSTPPT 86 Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144 V++ L+LF+TF+VMSP DR QP N+I A+ + A+P FM TRE D Sbjct: 87 QVLVGLSLFLTFFVMSPVFDRIYTDAYQPFAENKIQMMEALDKGAQPLKEFMLKQTRESD 146 Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204 L+L++ ++ R + + + R+L+P+F+ SEL+ +F+IGF I LPFLIIDM+VA+ Sbjct: 147 LALYVKLS----RGPALQGPEDVPLRLLVPAFVTSELKTAFQIGFAIFLPFLIIDMVVAS 202 Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 I+M+MGMMM+ P +SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 203 ILMSMGMMMMSPALVSLPFKLMLFVLVDGWQLLIGSLAQSF 243 >gi|50120649|ref|YP_049816.1| flagellar biosynthesis protein FliP [Pectobacterium atrosepticum SCRI1043] gi|49611175|emb|CAG74621.1| flagellar biosynthetic protein [Pectobacterium atrosepticum SCRI1043] Length = 258 Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 99/227 (43%), Positives = 147/227 (64%), Gaps = 6/227 (2%) Query: 21 SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 + L ++ P +W V+T T L+ P L+M+T F R IIV S+LR +G Sbjct: 34 AQLPGIVTQPLPNGGQSWTLSVQTLVFLTSLTFLPAALLMMTSFTRIIIVLSLLRNALGT 93 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 + PPN V++ L LF+TF+VMSP L+R + P +QI+ AI+R AEP FM Sbjct: 94 PTAPPNQVLLGLTLFLTFFVMSPVLNRVYDEAYLPFSQDQISMEVAIERGAEPLREFMLR 153 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 TRE DL+LF +A +I + + R+L+P+F+ SEL+ +F+IGF + +PFLII Sbjct: 154 QTRETDLALFTRLAEIP----EIQGPEAVPMRVLLPAFVTSELKTAFQIGFTVFIPFLII 209 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 D++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 210 DLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 256 >gi|325288789|ref|YP_004264970.1| flagellar biosynthetic protein FliP [Syntrophobotulus glycolicus DSM 8271] gi|324964190|gb|ADY54969.1| flagellar biosynthetic protein FliP [Syntrophobotulus glycolicus DSM 8271] Length = 250 Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 106/232 (45%), Positives = 151/232 (65%), Gaps = 6/232 (2%) Query: 14 PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73 P+ V A D+ N P + + S ++ F I T+LS+ P +L+++T F R I+V S +R Sbjct: 24 PQGVRAAGINLDLGNTPVEQTSSA--IQIFLIMTVLSLVPAILVLMTSFTRIIVVLSFVR 81 Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133 MG +PPN VII LAL +TF+VM+PT + I+P + NQI+ A+ R P Sbjct: 82 NAMGTQQLPPNQVIIGLALILTFFVMAPTFSQVNTNAIKPYIENQISREEALTRAEAPLR 141 Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193 FM TREKDL+LF+ ++ T I +L+PSF+ISEL+ +F+IGF I + Sbjct: 142 EFMIKQTREKDLALFVGLSQIPQPKT----YRDIPTYVLVPSFVISELKTAFQIGFAIFI 197 Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 PF+IIDMIVA+ +M+MGMMMLPP ISLPFK++ FV++DGW L+V++LV SF Sbjct: 198 PFMIIDMIVASTLMSMGMMMLPPMMISLPFKILLFVIVDGWYLIVQSLVASF 249 >gi|332994111|gb|AEF04166.1| flagellar biosynthesis protein FliP [Alteromonas sp. SN2] Length = 252 Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 86/201 (42%), Positives = 133/201 (66%), Gaps = 3/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 I T LS+ P ++M+T F R I+V SILR +G+ P N +++ ++LF++ ++M+P + Sbjct: 51 IMTALSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILVGVSLFLSMFIMAPVFE 110 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 E +QP ++ Q+T AI++ P FM + TR KDL F+ +A + D Sbjct: 111 EINERALQPYLSEQMTSLDAIEQAKGPMRAFMLSQTRVKDLETFVRIAGDEGKYAD---T 167 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D + ILIP+F+ SEL+ +F+IGF++ +PFLIID++VA+I+MAMGMMML P +SLPFK Sbjct: 168 DEVPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVASILMAMGMMMLSPMIVSLPFK 227 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW+L+ L SF Sbjct: 228 LMLFVLVDGWNLIFGTLATSF 248 >gi|283853451|ref|ZP_06370695.1| flagellar biosynthetic protein FliP [Desulfovibrio sp. FW1012B] gi|283571171|gb|EFC19187.1| flagellar biosynthetic protein FliP [Desulfovibrio sp. FW1012B] Length = 262 Score = 177 bits (448), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 91/199 (45%), Positives = 134/199 (67%), Gaps = 4/199 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T+LS+AP ++ VT F R IIVFS LR MG+ VPP ++ SLA+F+T +M PT + Sbjct: 66 TVLSLAPSFILTVTSFTRIIIVFSFLRQAMGVPQVPPTQILASLAIFLTCVIMYPTGKQI 125 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 + +QP + +I T A+++ P F+ +TREKDLS+F + R D Sbjct: 126 NDDALQPYLEERIGFTEALKKAEAPLREFLFKHTREKDLSVFYTVTKM-ERPKD---KAE 181 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 + +L FMISEL+ +F IGFLI +PFLI+DM++++I++AMGMMMLPP +I++PFK++ Sbjct: 182 VPTMMLAAGFMISELKTAFTIGFLIYIPFLILDMVISSILLAMGMMMLPPATIAMPFKLL 241 Query: 227 FFVLIDGWSLLVENLVKSF 245 FVL+DGW+L+V +LV SF Sbjct: 242 LFVLVDGWALMVGSLVNSF 260 >gi|94495439|ref|ZP_01302019.1| flagellar transport protein [Sphingomonas sp. SKA58] gi|94424827|gb|EAT09848.1| flagellar transport protein [Sphingomonas sp. SKA58] Length = 255 Score = 177 bits (448), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 89/199 (44%), Positives = 131/199 (65%), Gaps = 4/199 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 ++L++ P L++M+T F R IIV S+LR +G+ PPN V++ LALF++ +VM P +D Sbjct: 59 SLLTVLPSLVLMMTSFTRIIIVLSLLRQALGLQQTPPNQVLVGLALFLSLFVMRPAIDTI 118 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 P QI+ A+ R A+ FM TRE DL LF ++A + T Sbjct: 119 NAQAFDPYGKGQISIEEAVGRSAKVLHGFMSKQTRESDLKLFANLAQAPAFRTPA----D 174 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 I + IL+P+F+ SEL+ +F+IGF+I LPFLIID++VA+ +MA+GMMML PT IS+PFK++ Sbjct: 175 IPFSILLPAFVTSELKTAFQIGFMIFLPFLIIDLVVASTLMALGMMMLSPTIISMPFKLL 234 Query: 227 FFVLIDGWSLLVENLVKSF 245 FVL+DGW+L + +L SF Sbjct: 235 LFVLVDGWALTMGSLAGSF 253 >gi|88800467|ref|ZP_01116031.1| flagellar biosynthetic protein FliP [Reinekea sp. MED297] gi|88776797|gb|EAR08008.1| flagellar biosynthetic protein FliP [Reinekea sp. MED297] Length = 221 Score = 177 bits (448), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 89/206 (43%), Positives = 132/206 (64%), Gaps = 3/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ I T L+ P L+M+T F R I+VF+ILR +G+ P N ++I LALF+TF++M Sbjct: 17 IQILAIMTALTFIPAALMMMTSFTRIIVVFAILRQAIGLQQTPSNQMLIGLALFLTFFIM 76 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +P + IQP + I A+ R EP FM TRE DL LF+ +A Sbjct: 77 APVFNEVNANAIQPYIAEDILPLEAVDRAVEPMKRFMLAQTRESDLGLFIRLADEEGNFD 136 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 D + IL+P+F+ SEL+ +F+IGFL+ +PFLIID+++A+I+MAMGMMML P I Sbjct: 137 D---PQQVPLNILMPAFVTSELKTAFQIGFLLFIPFLIIDLVIASILMAMGMMMLSPIII 193 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW++++ ++ SF Sbjct: 194 SLPFKIMLFVLVDGWAMVMGSVAASF 219 >gi|127512307|ref|YP_001093504.1| flagellar biosynthesis protein FliP [Shewanella loihica PV-4] gi|126637602|gb|ABO23245.1| flagellar biosynthetic protein FliP [Shewanella loihica PV-4] Length = 255 Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 93/236 (39%), Positives = 144/236 (61%), Gaps = 7/236 (2%) Query: 13 TPELVFAKSSLHDVMNIPADLSISTWIVRTFGIF---TILSIAPILLIMVTCFPRFIIVF 69 P+L A+ + + + ST T I T LS P ++IM+T F R I+V Sbjct: 22 APQLALAQDGILPAVTVTTGADGSTQYSVTMQILLLMTALSFLPAMVIMLTSFTRIIVVL 81 Query: 70 SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129 SILR +G+ P N V+I ++LFMTF++M+P D+ + ++P ++ +T A + Sbjct: 82 SILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDKIYDQAVKPYIDETMTIEQAYDKGK 141 Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189 EP FM TR DL F+ + S ++N I + +LIP+F+ SEL+ +F+IGF Sbjct: 142 EPLRAFMLAQTRLTDLETFVQI--SGYQN--IQSPEDAPMSVLIPAFITSELKTAFQIGF 197 Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++ +PFL++D++VA+I+MAMGMMML P +SLPFK++ FVL+DGWSL++ L SF Sbjct: 198 MLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVMGTLANSF 253 >gi|289523556|ref|ZP_06440410.1| flagellar biosynthetic protein FliP [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503248|gb|EFD24412.1| flagellar biosynthetic protein FliP [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 252 Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 86/216 (39%), Positives = 143/216 (66%), Gaps = 7/216 (3%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P+D++++ I+ + TILS+AP +++MVT F R I+V +R +G+ +PPN V+++ Sbjct: 43 PSDVALTLQII---ALITILSLAPAIVLMVTSFTRIIVVLGFVRQSIGLQQLPPNQVLVT 99 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 LALF+TF+ MSP + I P M +I A + P FM + ++++LSL + Sbjct: 100 LALFLTFFTMSPVWQKIYSESINPYMAGEIATQEAYAKAIGPIRDFMFSQVKDEELSLMV 159 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 ++ +D + R+LIP+FMI EL+++F++G LI +PF+++DMIVA+++++M Sbjct: 160 SLSDLPQPQ----NHDDVPTRVLIPAFMIGELKKAFQMGILIFIPFIVVDMIVASVLLSM 215 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GM+MLPP ISLPFKV+ FV+ DGW L++ ++V SF Sbjct: 216 GMIMLPPMLISLPFKVLLFVVADGWDLVIYSVVSSF 251 >gi|332702322|ref|ZP_08422410.1| flagellar biosynthetic protein FliP [Desulfovibrio africanus str. Walvis Bay] gi|332552471|gb|EGJ49515.1| flagellar biosynthetic protein FliP [Desulfovibrio africanus str. Walvis Bay] Length = 263 Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 102/236 (43%), Positives = 146/236 (61%), Gaps = 9/236 (3%) Query: 14 PELVFAKSSLHDVMNI----PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVF 69 P L +A+ H M+I P +S + F + T+LS+AP +++ +T F R IIVF Sbjct: 31 PGLAWAQDIPHFSMSISGGQPEPEQVSLLLEIIF-LLTVLSLAPAIIMTMTSFTRIIIVF 89 Query: 70 SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129 LR +G +PP+ ++ISLA+FMTF +M PT +QP M +I A+ Sbjct: 90 HFLRQALGTQQMPPSQILISLAIFMTFVIMMPTAMAINNTALQPYMEERIGFKEALDNAQ 149 Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189 +P FM +TREKDLS+F +A + + + +L +F+ISEL+ F IGF Sbjct: 150 KPLREFMFKHTREKDLSVFYSIAKIERPD----NREQVPTMLLTAAFVISELKTGFIIGF 205 Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LI +PFLI+DM+VA+I++AMGMMMLPP ISLPFKV+ FV++DGW+LL +LV SF Sbjct: 206 LIYIPFLILDMVVASILLAMGMMMLPPVMISLPFKVLLFVMVDGWNLLTASLVNSF 261 >gi|219670147|ref|YP_002460582.1| flagellar biosynthesis protein FliP [Desulfitobacterium hafniense DCB-2] gi|219540407|gb|ACL22146.1| flagellar biosynthetic protein FliP [Desulfitobacterium hafniense DCB-2] Length = 259 Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 105/235 (44%), Positives = 155/235 (65%), Gaps = 6/235 (2%) Query: 11 LVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70 LV + V A D A+ + ST ++ + T++SIAP +L+++T F R IIV S Sbjct: 30 LVNTDSVLAAGLTLDFGTTTAEQTSST--LQILLLLTVISIAPAILVLMTSFTRTIIVLS 87 Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130 +R +G +PPN V+I L+LF+TF+VM+PT + +QP M NQIT+ A+Q+ Sbjct: 88 FVRNALGTQQLPPNQVLIGLSLFLTFFVMAPTWNEINTQALQPYMQNQITQAEALQQAEA 147 Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190 P FM TREKDL+LF+ +A T I +LIP+F+ISEL+ +F++GF Sbjct: 148 PLRQFMFEQTREKDLTLFVGLARMEQPQT----YGDIPTYVLIPAFVISELKTAFQMGFA 203 Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 I +PF++IDM+VA+++M+MGMMMLPP +SLPFK++ FVL+DGW L+V++LV SF Sbjct: 204 IFIPFMVIDMLVASVLMSMGMMMLPPMMVSLPFKILLFVLVDGWHLVVQSLVTSF 258 >gi|319764505|ref|YP_004128442.1| flagellar biosynthetic protein flip [Alicycliphilus denitrificans BC] gi|317119066|gb|ADV01555.1| flagellar biosynthetic protein FliP [Alicycliphilus denitrificans BC] Length = 251 Score = 176 bits (446), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 85/206 (41%), Positives = 132/206 (64%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++T FT LS P +L+M+T F R +IV S+LR +G PPN V++ L+LF+T +VM Sbjct: 48 IQTLLFFTALSFLPAVLLMMTGFTRIVIVLSLLRQAIGTQQAPPNQVVVGLSLFLTLFVM 107 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 PTLD+ + P N ++ A+ + P FM TR+ D +LF +A T Sbjct: 108 GPTLDKVYQEAYVPYTTNALSFEQALAKAEAPMRGFMLKQTRQSDFTLFARLAKLDEGVT 167 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + R+L+P+F+ SEL+ +F+IGF++ +PFLIIDM+V++++M++GMMML P + Sbjct: 168 ----AETAPLRVLVPAFVTSELKTAFQIGFMVFIPFLIIDMVVSSVLMSLGMMMLSPVLV 223 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 +LPFK++ FVL DGW+LL+ +L SF Sbjct: 224 ALPFKLMLFVLADGWNLLIGSLAASF 249 >gi|255264563|ref|ZP_05343905.1| flagellar biosynthetic protein FliP [Thalassiobium sp. R2A62] gi|255106898|gb|EET49572.1| flagellar biosynthetic protein FliP [Thalassiobium sp. R2A62] Length = 243 Score = 176 bits (446), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 96/234 (41%), Positives = 140/234 (59%), Gaps = 6/234 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 +IR+ F AL L + V A+ ++ D S++ ++ + TILSI P L IM+T Sbjct: 4 LIRFSFLALALFSATSVTAQ---EISLSFGDDASLAGRSIQLLALVTILSIVPGLAIMIT 60 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 CFP + V +ILR +G+ PPN++I+SLALF+T++VM P S +GI PL ++ Sbjct: 61 CFPFIVTVLAILRQAIGLQQSPPNMLIVSLALFLTYFVMEPVFIESWTLGIGPLSTGELE 120 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A+ PF FM D+ S + DI ++IPSF++SE Sbjct: 121 IEPALANAISPFRDFMALRIDPNTFQTLTDIRPQSSTSEDIASA---PLSLMIPSFLLSE 177 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234 + R+F++GFLI LPFLIID++VA I+M+MGMMM+PP +SLPFK+ FFV+ DGW Sbjct: 178 IERAFQVGFLIFLPFLIIDLVVAAILMSMGMMMVPPAIVSLPFKLAFFVIADGW 231 >gi|330826721|ref|YP_004390024.1| flagellar biosynthetic protein FliP [Alicycliphilus denitrificans K601] gi|329312093|gb|AEB86508.1| flagellar biosynthetic protein FliP [Alicycliphilus denitrificans K601] Length = 251 Score = 176 bits (446), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 86/206 (41%), Positives = 132/206 (64%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++T FT LS P +L+M+T F R +IV S+LR +G PPN V++ L+LF+T +VM Sbjct: 48 IQTLLFFTALSFLPAVLLMMTGFTRIVIVLSLLRQAIGTQQAPPNQVVVGLSLFLTLFVM 107 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 PTLD+ + P N ++ A+ + P FM TR+ D +LF +A T Sbjct: 108 GPTLDKVYQEAYVPYTTNALSFEQALAKAEAPMRGFMLKQTRQSDFALFARLAKLDEGVT 167 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 T R+L+P+F+ SEL+ +F+IGF++ +PFLIIDM+V++++M++GMMML P + Sbjct: 168 AETA----PLRVLVPAFVTSELKTAFQIGFMVFIPFLIIDMVVSSVLMSLGMMMLSPVLV 223 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 +LPFK++ FVL DGW+LL+ +L SF Sbjct: 224 ALPFKLMLFVLADGWNLLIGSLAASF 249 >gi|73532546|dbj|BAE19831.1| flagellar biosynthesis protein [Edwardsiella tarda] Length = 231 Score = 176 bits (446), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 89/194 (45%), Positives = 132/194 (68%), Gaps = 5/194 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T T LS P L+++T F R IIV +LRT G S PPN V++ LALF+TF++M Sbjct: 43 VQTLVFLTSLSFLPAALLLMTSFTRIIIVLGLLRTP-GHPSAPPNQVLLGLALFLTFFIM 101 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP LD+ + QP +I+ TA+ R A+P FM TRE DL+LF +A + Sbjct: 102 SPVLDKIYQDAYQPFSEQKISMETALDRGAKPLRAFMLRQTRETDLALFSRLA----KQP 157 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 ++ + + RIL+P+++ SEL+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP +I Sbjct: 158 EMQGPEDVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATI 217 Query: 220 SLPFKVIFFVLIDG 233 SLPFK++ FVL+DG Sbjct: 218 SLPFKLMLFVLVDG 231 >gi|291617858|ref|YP_003520600.1| FliP [Pantoea ananatis LMG 20103] gi|291152888|gb|ADD77472.1| FliP [Pantoea ananatis LMG 20103] gi|327394275|dbj|BAK11697.1| flagellar biosynthetic protein FliP precursor [Pantoea ananatis AJ13355] Length = 244 Score = 176 bits (445), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 96/229 (41%), Positives = 151/229 (65%), Gaps = 6/229 (2%) Query: 19 AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 A + L +++ P +W V+T T L+ P +L+M+T F R IIVF +LR + Sbjct: 18 AHAQLPGLVSQPLANGGQSWSLPVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNAL 77 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G S PPN V++ L LF+TF++M+PT D+ + P ++I+ AI + A+P FM Sbjct: 78 GTPSAPPNQVLLGLTLFLTFFIMAPTFDKIYQDAYLPFSQDKISMDVAIDKGAQPLREFM 137 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 TRE DL+LF +A+++ I + + RIL+P+++ SEL+ +F+IGF + +PFL Sbjct: 138 LRQTREADLALFARLANTA----PIAGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFL 193 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IID++VA+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 194 IIDLVVASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 242 >gi|317133473|ref|YP_004092787.1| flagellar biosynthetic protein FliP [Ethanoligenens harbinense YUAN-3] gi|315471452|gb|ADU28056.1| flagellar biosynthetic protein FliP [Ethanoligenens harbinense YUAN-3] Length = 267 Score = 176 bits (445), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 92/193 (47%), Positives = 124/193 (64%), Gaps = 4/193 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +LIM+T F R II S LR +G PPN V++ +ALF++ ++MSP +++ Q Sbjct: 78 PSILIMMTSFTRIIIFLSFLRNALGTQQTPPNQVLVGIALFLSLFIMSPVINQINTTAYQ 137 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 PL+N QIT A +P FM T L F+ MA + + D+I +L Sbjct: 138 PLVNGQITTEQAEVNAMKPLRQFMFKQTENASLKTFLSMAGTP----TVKSLDNIPNSVL 193 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 IP+F+ISEL+R+F +GFLI LPFLIID+IV T +M+MGMMMLPPT ISLP K+ FVL+D Sbjct: 194 IPAFVISELKRAFMMGFLIYLPFLIIDVIVGTTLMSMGMMMLPPTMISLPLKLALFVLVD 253 Query: 233 GWSLLVENLVKSF 245 GW L V++LV SF Sbjct: 254 GWGLTVQSLVYSF 266 >gi|226313054|ref|YP_002772948.1| flagellar biosynthetic protein FliP precursor [Brevibacillus brevis NBRC 100599] gi|226096002|dbj|BAH44444.1| flagellar biosynthetic protein FliP precursor [Brevibacillus brevis NBRC 100599] Length = 253 Score = 176 bits (445), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 94/201 (46%), Positives = 139/201 (69%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 I T+LS+AP +L+++T F R IIV S +R + +PPN V+I+LALFMTF++M+PTL Sbjct: 57 ILTVLSVAPAILLLMTSFARIIIVLSFVRNALATQQMPPNQVLIALALFMTFFIMAPTLG 116 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + E +QP M ++T+ A PF FM TREKDL+LF++ + T Sbjct: 117 QVNETAVQPFMQGKLTQQQAFDAAVIPFKQFMAKQTREKDLALFLEYTKAERPKT----I 172 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 I L+P++ ISEL+ +F+IGF+I +PFL+IDMI+++I+M MGMMMLPP ISLPFK Sbjct: 173 QDIPLNALVPAYAISELKTAFQIGFMIFIPFLVIDMIISSILMGMGMMMLPPVMISLPFK 232 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ F+++DGW L+V++L+ SF Sbjct: 233 ILLFIMVDGWYLIVKSLLTSF 253 >gi|296135631|ref|YP_003642873.1| flagellar biosynthetic protein FliP [Thiomonas intermedia K12] gi|295795753|gb|ADG30543.1| flagellar biosynthetic protein FliP [Thiomonas intermedia K12] Length = 255 Score = 176 bits (445), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 96/207 (46%), Positives = 146/207 (70%), Gaps = 4/207 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T T L P +L+M+T F R IIV S+L+ +G +VPP+ VI+ L+LF+TF+VM Sbjct: 52 VQTLLFMTALVFLPAMLLMMTAFTRIIIVLSLLKQALGTTTVPPSQVIVGLSLFLTFFVM 111 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP L++ ++ I+PLM+NQIT A+Q A P FM TR++DL+LF+ + S H+ Sbjct: 112 SPVLNQVNDVAIKPLMDNQITMQQALQTGAAPLRTFMLGQTRQEDLALFVKL--SGHKAL 169 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 D K + +LIP+F+ SEL+ +F+IGF+I +PFLIIDM+VA ++M+MGMMML P ++ Sbjct: 170 D--KPEDTPMTLLIPAFVTSELKTAFQIGFVIFIPFLIIDMVVAAVLMSMGMMMLSPVTV 227 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246 S P K++ FVL+ GW L++ +L++SF+ Sbjct: 228 SFPLKLMLFVLVGGWELVIGSLMQSFV 254 >gi|121997286|ref|YP_001002073.1| flagellar biosynthesis protein FliP [Halorhodospira halophila SL1] gi|121588691|gb|ABM61271.1| flagellar biosynthetic protein FliP [Halorhodospira halophila SL1] Length = 246 Score = 176 bits (445), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 86/193 (44%), Positives = 128/193 (66%), Gaps = 4/193 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +++M+T F R I+V +ILR +G S P N V+I LALF+T +VM P D E +Q Sbjct: 56 PAMVLMMTAFTRIIVVLAILRQALGTASTPSNQVLIGLALFLTLFVMMPVFDEINETALQ 115 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P M ++ A+++ +EP FM TRE D++LF+ +A ++ D + +L Sbjct: 116 PYMAEEMGAEEALEQASEPMREFMIRQTREDDIALFLRIADYG----EVDSPDDVPMSVL 171 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 IP+FM SEL+ +F IGF++ LPFL+ID++VA+ +M+MGM+ML P ISLPFK++ FVL+D Sbjct: 172 IPAFMTSELKTAFIIGFVLYLPFLVIDLVVASTLMSMGMLMLSPMIISLPFKIMLFVLVD 231 Query: 233 GWSLLVENLVKSF 245 GWSL++ L SF Sbjct: 232 GWSLIMGTLASSF 244 >gi|297617154|ref|YP_003702313.1| flagellar biosynthetic protein FliP [Syntrophothermus lipocalidus DSM 12680] gi|297144991|gb|ADI01748.1| flagellar biosynthetic protein FliP [Syntrophothermus lipocalidus DSM 12680] Length = 259 Score = 176 bits (445), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 97/206 (47%), Positives = 141/206 (68%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + TILS+AP +LI++T F R I+V S +R+ + +PPN +++ LALF+TF+VM Sbjct: 57 LQILALLTILSLAPAILILLTSFTRIIVVLSFVRSALATQQMPPNQILVGLALFLTFFVM 116 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +PT E +QP +IT+ A R P FM TREKDL+LF+ MA T Sbjct: 117 APTWKEVNEKALQPYFQGEITQDQAFTRGMAPLRTFMFKQTREKDLALFVKMAKIQRPRT 176 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 D Y +LIP+F+ISEL+ +FEIGF+I +PFL+IDM+V++ +M+MGM+MLPP I Sbjct: 177 ---YGDVPNY-VLIPAFVISELKTAFEIGFIIFVPFLVIDMVVSSALMSMGMLMLPPMMI 232 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW+L+V +L+ SF Sbjct: 233 SLPFKILLFVLVDGWNLVVNSLLMSF 258 >gi|229827384|ref|ZP_04453453.1| hypothetical protein GCWU000182_02772 [Abiotrophia defectiva ATCC 49176] gi|229788322|gb|EEP24436.1| hypothetical protein GCWU000182_02772 [Abiotrophia defectiva ATCC 49176] Length = 283 Score = 175 bits (444), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 85/200 (42%), Positives = 136/200 (68%), Gaps = 4/200 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T+L +AP +LI++T F R I+V +R+ + + PPN V++ LALF+T+++M+P + Sbjct: 87 TVLGLAPSILILLTSFTRIIVVLHFVRSALTTQTTPPNQVLVGLALFLTWFIMAPIFMQI 146 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 ++PL + +I A + +P FM T KD+ LF+D+A ++ + Sbjct: 147 NTEALKPLTDGKINFEQAYEVGIKPLRTFMYKQTNTKDIRLFLDIAGID----EVKDMEE 202 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 I +LIP+F+ISELR +F IGF I +PFL+IDM+V++ +M+MGMMMLPPT+IS+PFK++ Sbjct: 203 IPTNVLIPAFIISELRAAFIIGFCIYIPFLVIDMVVSSTLMSMGMMMLPPTTISMPFKIL 262 Query: 227 FFVLIDGWSLLVENLVKSFI 246 F+++DGW L++ NLVKSF+ Sbjct: 263 LFIMVDGWDLVIGNLVKSFV 282 >gi|255022051|ref|ZP_05294057.1| Flagellar biosynthesis pathway, component FliP [Acidithiobacillus caldus ATCC 51756] gi|254968537|gb|EET26093.1| Flagellar biosynthesis pathway, component FliP [Acidithiobacillus caldus ATCC 51756] Length = 231 Score = 175 bits (444), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 90/206 (43%), Positives = 138/206 (66%), Gaps = 3/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T + T+L+ P +++M+T F R IIV S+LR G+G+ ++PPN+V+I LALF+TF+VM Sbjct: 25 VQTVILMTVLTFLPAIVLMMTGFTRIIIVLSLLRQGLGLSTMPPNIVLIGLALFLTFFVM 84 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 PT + PL +++ T A+ +P +FMRNNT + ++ F+ M + T Sbjct: 85 QPTWSSINHQALIPLEQGKVSVTRALAIAEKPLRIFMRNNTTKDSVAQFLRM--DGIKKT 142 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 ++ D I R+LIP+F +S+L FE+GFL+ LPFLIID++VA ++MAMGMMM+ P +I Sbjct: 143 LRSEKD-IPMRVLIPAFAVSQLESGFELGFLVYLPFLIIDLLVAAVLMAMGMMMVSPQTI 201 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 S+P K++ F L GW L+ LV+SF Sbjct: 202 SIPIKLLLFALGGGWLLVTGTLVRSF 227 >gi|288870652|ref|ZP_06114850.2| flagellar biosynthetic protein FliP [Clostridium hathewayi DSM 13479] gi|288866388|gb|EFC98686.1| flagellar biosynthetic protein FliP [Clostridium hathewayi DSM 13479] Length = 259 Score = 175 bits (444), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 87/203 (42%), Positives = 130/203 (64%), Gaps = 2/203 (0%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 +F L++ P LLIM+T F R +IV S LR +G PPN V+I LALF+T ++MSP Sbjct: 56 LFLFLAVVPSLLIMMTSFTRIVIVLSFLRNALGTQQSPPNQVMIGLALFLTLFIMSPVFA 115 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + +P IT A R EP FM T +K L LF+ ++ + + Sbjct: 116 KVNTQAYEPYKAGAITREEAFTRAQEPMKEFMLKQTEKKSLDLFLSISKTEVPDVSGGPE 175 Query: 165 DHIEYR--ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222 +++ +L+PSF++SEL ++F +GFLI +PFLIID++V++ +M+MGM+MLPPT I+LP Sbjct: 176 GYMKLGLTVLVPSFILSELNKAFTMGFLIYIPFLIIDLVVSSTLMSMGMVMLPPTMIALP 235 Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245 FK++ FVL+DGWSL+++ LV F Sbjct: 236 FKIMMFVLVDGWSLVIKTLVTGF 258 >gi|119775422|ref|YP_928162.1| flagellar biosynthesis protein FliP [Shewanella amazonensis SB2B] gi|119767922|gb|ABM00493.1| flagellar biosynthetic protein FliP [Shewanella amazonensis SB2B] Length = 249 Score = 175 bits (444), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 86/201 (42%), Positives = 131/201 (65%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T LS P ++IM+T F R I+ S+LR +G+ P N V+I L+LFMTF++M+P D Sbjct: 51 LMTALSFLPAMVIMLTSFTRIIVTLSLLRQAIGLQQAPSNQVLIGLSLFMTFFIMAPVFD 110 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + E G++P M + A +R EP FM + R DL F+++A + I Sbjct: 111 KIYEQGVKPYMEETLPIDQAFERGKEPLKAFMLSQVRITDLETFVNIAGYDN----IKSP 166 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + ++IP+F+ SEL+ +F+IGF++ +PFL+ID++VA+I+MAMGMMML P +SLPFK Sbjct: 167 EEAPMTVIIPAFITSELKTAFQIGFMLFVPFLVIDLVVASILMAMGMMMLSPMIVSLPFK 226 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGWSL++ L SF Sbjct: 227 IMLFVLVDGWSLVMGTLANSF 247 >gi|254519408|ref|ZP_05131464.1| flagellar biosynthetic protein FliP [Clostridium sp. 7_2_43FAA] gi|226913157|gb|EEH98358.1| flagellar biosynthetic protein FliP [Clostridium sp. 7_2_43FAA] Length = 257 Score = 175 bits (443), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 86/193 (44%), Positives = 133/193 (68%), Gaps = 3/193 (1%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P ++IM+T F R I+VFS L++ +G PN ++I LALF+T ++M P + Sbjct: 66 PSIIIMMTSFTRIIVVFSFLKSALGAQQSIPNQILIGLALFLTIFIMQPVYSEINNNAFK 125 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P M N IT+ A++ ++P FM TR+KDL LF++ S +IT+ D+I ++ Sbjct: 126 PFMENTITQDEAMEAGSKPLREFMLKQTRQKDLELFIE--TSKLDKEEITR-DNIPLTVV 182 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 IP+F ISEL+ +F+IGFL+ LPFLIIDM+VA+++M+MGM M+PP ++LPFK++ FV++D Sbjct: 183 IPAFAISELKTAFQIGFLLFLPFLIIDMVVASVLMSMGMFMVPPVMVALPFKLLLFVMVD 242 Query: 233 GWSLLVENLVKSF 245 GW L+V++L+ SF Sbjct: 243 GWYLMVKSLIMSF 255 >gi|146277690|ref|YP_001167849.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides ATCC 17025] gi|145555931|gb|ABP70544.1| flagellar biosynthetic protein FliP [Rhodobacter sphaeroides ATCC 17025] Length = 246 Score = 175 bits (443), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 86/206 (41%), Positives = 133/206 (64%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + T L++ P L++ ++ F R IIV SILR +G PPN V+I+LALF+TF+VM Sbjct: 42 LQILALMTALTVLPSLVLGMSAFTRIIIVLSILRQALGTQQTPPNQVLIALALFLTFFVM 101 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 PTL + P ++ ++ AI+R F+ NTR+ DL +F D+A + Sbjct: 102 QPTLGTLYAEALSPFLDGRLAAEPAIERGGAIMKEFLIANTRQNDLLMFSDLAGAGPYE- 160 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + L+P+FM SEL+ +F+IGFL+ LPFL+IDM++A+I+MA+GMMML P + Sbjct: 161 ---DPRDVPFSTLLPAFMTSELKTAFQIGFLLFLPFLVIDMVIASILMALGMMMLSPMLV 217 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW+L V +L ++ Sbjct: 218 SLPFKLLLFVLVDGWALTVGSLAATY 243 >gi|157376188|ref|YP_001474788.1| flagellar biosynthesis protein FliP [Shewanella sediminis HAW-EB3] gi|157318562|gb|ABV37660.1| Triacylglycerol lipase [Shewanella sediminis HAW-EB3] Length = 248 Score = 175 bits (443), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 95/245 (38%), Positives = 148/245 (60%), Gaps = 8/245 (3%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIF---TILSIAPILLIMVT 60 + F+L L++PE F++ + + + T T I T LS P ++IM+T Sbjct: 7 FIAFSLLLISPE-AFSQGGVLPAVTVTTGPQGETQYSVTMQILLLMTSLSFLPAMVIMLT 65 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R I+V SILR +G+ P N V+I ++LF+TF++MSP D+ + ++P M + Sbjct: 66 SFTRIIVVLSILRQAIGLQQAPSNQVLIGMSLFLTFFIMSPVFDKVYDDAVKPYMEESMG 125 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A + EP FM TR DL F+ + S ++N I + ++IPSF+ SE Sbjct: 126 IEEAFNKGKEPIKTFMLAQTRVTDLDTFIQI--SGYQN--INSPEEAPMSVIIPSFITSE 181 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK++ FVL+DGWSL++ Sbjct: 182 LKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVMGT 241 Query: 241 LVKSF 245 L SF Sbjct: 242 LANSF 246 >gi|307293814|ref|ZP_07573658.1| flagellar biosynthetic protein FliP [Sphingobium chlorophenolicum L-1] gi|306879965|gb|EFN11182.1| flagellar biosynthetic protein FliP [Sphingobium chlorophenolicum L-1] Length = 273 Score = 174 bits (442), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 88/199 (44%), Positives = 131/199 (65%), Gaps = 4/199 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 ++L++ P L++M+T F R IIV S+LR +G+ PPN V++ L+LF++ +VM P +D+ Sbjct: 77 SLLTVLPSLILMMTSFTRIIIVLSLLRQALGLQQTPPNQVLVGLSLFLSLFVMRPAIDQI 136 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 P QI A+ R A+ FM TRE DL LF ++A + T Sbjct: 137 NAQAFDPYGKGQIPIEEAVGRSAKVLHGFMTKQTRETDLKLFQNLAEAPAFRTPA----D 192 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 I + IL+P+F+ SEL+ +F+IGF+I LPFLIID++VA+ +MA+GMMML PT IS+PFK++ Sbjct: 193 IPFSILLPAFVTSELKTAFQIGFMIFLPFLIIDLVVASTLMALGMMMLSPTIISMPFKLL 252 Query: 227 FFVLIDGWSLLVENLVKSF 245 FVL+DGW+L + +L SF Sbjct: 253 LFVLVDGWALTMGSLAGSF 271 >gi|15606937|ref|NP_214318.1| flagellar biosynthesis protein FliP [Aquifex aeolicus VF5] gi|6225367|sp|O67750|FLIP_AQUAE RecName: Full=Flagellar biosynthetic protein fliP gi|2984179|gb|AAC07711.1| flagellar biosynthetic protein FliP [Aquifex aeolicus VF5] Length = 239 Score = 174 bits (442), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 90/207 (43%), Positives = 140/207 (67%), Gaps = 4/207 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 +R TILS+ P +LIM T F R ++V S+LR +G PPN VII+L+LF+TF++M Sbjct: 35 IRLLIFLTILSLVPSILIMFTSFTRLVVVLSLLRQAIGTPQAPPNQVIIALSLFLTFFIM 94 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 PT+D+ +QP + +I++ +RV FM +TR++ L F+ +A Sbjct: 95 KPTIDKINSEALQPYIREEISDEEFFKRVEFYAKDFMLKHTRKETLEAFLSIAKIPK--- 151 Query: 160 DITKNDH-IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 D K H I R++IP+FM+SEL+ +FEI FL+ +PFLI+D++VA+I+++MG++M+PP Sbjct: 152 DSVKEPHEIPLRVVIPAFMVSELKTAFEIVFLLYIPFLIVDLVVASILISMGIIMIPPQL 211 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLPFK++ FVL +GW L+V +LV+S+ Sbjct: 212 ISLPFKIMLFVLANGWELVVLSLVRSY 238 >gi|294013059|ref|YP_003546519.1| flagellar biosynthetic protein FliP [Sphingobium japonicum UT26S] gi|292676389|dbj|BAI97907.1| flagellar biosynthetic protein FliP [Sphingobium japonicum UT26S] Length = 288 Score = 174 bits (442), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 87/199 (43%), Positives = 131/199 (65%), Gaps = 4/199 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 ++L++ P L++M+T F R IIV S+LR +G+ PPN V++ L+LF++ +VM P +D+ Sbjct: 92 SLLTVLPSLILMMTSFTRIIIVLSLLRQALGLQQTPPNQVLVGLSLFLSLFVMRPAIDQI 151 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 P QI+ A+ R + FM TRE DL LF ++A + T Sbjct: 152 NGQAFDPYGKGQISIEEAVGRSGKVLHGFMTKQTRETDLKLFQNLAEAPAFRTPA----D 207 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 I + IL+P+F+ SEL+ +F+IGF+I LPFLIID++VA+ +MA+GMMML PT IS+PFK++ Sbjct: 208 IPFSILLPAFVTSELKTAFQIGFMIFLPFLIIDLVVASTLMALGMMMLSPTIISMPFKLL 267 Query: 227 FFVLIDGWSLLVENLVKSF 245 FVL+DGW+L + +L SF Sbjct: 268 LFVLVDGWALTMGSLAGSF 286 >gi|294339800|emb|CAZ88163.1| Flagellar biosynthetic protein FliP [Thiomonas sp. 3As] Length = 255 Score = 174 bits (441), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 96/207 (46%), Positives = 145/207 (70%), Gaps = 4/207 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T T L P +L+M+T F R IIV S+L+ +G +VPP+ VI+ L+LF+TF+VM Sbjct: 52 VQTLLFMTALVFLPAMLLMMTAFTRIIIVLSLLKQALGTTTVPPSQVIVGLSLFLTFFVM 111 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP L++ ++ I+PLM+NQIT A+Q A P FM TR++DL+LF+ + S H+ Sbjct: 112 SPVLNQVNDVAIKPLMDNQITMQQALQMGAAPLRTFMLGQTRQEDLALFVKL--SGHKAL 169 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 D K +L+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA ++M+MGMMML P ++ Sbjct: 170 D--KPADTPMSLLVPAFVTSELKTAFQIGFVIFIPFLIIDMVVAAVLMSMGMMMLSPVTV 227 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246 S P K++ FVL+ GW L++ +L++SFI Sbjct: 228 SFPLKLMLFVLVGGWELVIGSLMQSFI 254 >gi|170725983|ref|YP_001760009.1| flagellar biosynthesis protein FliP [Shewanella woodyi ATCC 51908] gi|169811330|gb|ACA85914.1| flagellar biosynthetic protein FliP [Shewanella woodyi ATCC 51908] Length = 248 Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 88/201 (43%), Positives = 132/201 (65%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T LS P +LIM+T F R IIV SILR +G+ P N V+I +++F+TF++MSP D Sbjct: 50 LMTALSFLPAMLIMLTSFTRIIIVLSILRQAIGLQQTPSNQVLIGMSMFLTFFIMSPVFD 109 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + + ++P MN + A EP FM TR DL F+++ S ++N I Sbjct: 110 KVYDSAVKPYMNESMNIEQAFHVGKEPIKEFMLAQTRVTDLETFVEI--SGYQN--INSV 165 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D ++IP+F+ SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK Sbjct: 166 DEAPMSVIIPAFITSELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFK 225 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGWSL++ L SF Sbjct: 226 IMLFVLVDGWSLVMGTLANSF 246 >gi|323341374|ref|ZP_08081618.1| flagellar biosynthetic protein FliP [Lactobacillus ruminis ATCC 25644] gi|323091251|gb|EFZ33879.1| flagellar biosynthetic protein FliP [Lactobacillus ruminis ATCC 25644] Length = 268 Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 106/255 (41%), Positives = 152/255 (59%), Gaps = 11/255 (4%) Query: 1 MIRYCFFALFLVT---PELVFAKSSLHDVMNI------PADLSISTWIVRTFGIFTILSI 51 ++ + A FL+ P+ V A S+ DV N D S+ IV TF I T+LSI Sbjct: 14 LVLFGMMACFLIAVRLPDHVAAVST-SDVTNTVNKLINGNDQGSSSKIVDTFVIMTLLSI 72 Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 P++LIM T F R I+V S +R+ +G PPN V+I LALF+T + M P + I Sbjct: 73 IPLILIMTTSFTRIIVVLSFVRSSLGTQQNPPNQVLIGLALFLTLFTMRPVYNDIYHNAI 132 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT-DITKNDHIEYR 170 QP N+IT+ R FM +KD+ LF D+ + R I + Sbjct: 133 QPYNENKITQQEVFDRSENRMKEFMYKQANKKDVKLFKDLDQKNERKKIKYRTYKDIPFT 192 Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230 ++ P+F++SEL+ +F IGFL+ +PF+IID++VA+I+M+MGM+ML P ISLPFK++ FVL Sbjct: 193 VMAPAFILSELKTAFSIGFLLFIPFMIIDLVVASILMSMGMIMLSPIMISLPFKILLFVL 252 Query: 231 IDGWSLLVENLVKSF 245 +DGW LLVE+LV+SF Sbjct: 253 VDGWYLLVESLVQSF 267 >gi|149200773|ref|ZP_01877748.1| Flagellar transport protein FliP [Roseovarius sp. TM1035] gi|149145106|gb|EDM33132.1| Flagellar transport protein FliP [Roseovarius sp. TM1035] Length = 246 Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 84/206 (40%), Positives = 135/206 (65%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + T L++ P L++ +T F R IIV SILR MG PPN V+I++ALF++F+VM Sbjct: 41 LQILALMTALTVLPSLVLGMTAFTRIIIVLSILRQAMGTMQTPPNQVLIAIALFLSFFVM 100 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P L + + P ++ Q+ A++ + FM NTR+ DL +F ++A + + Sbjct: 101 QPVLTEVYDTALSPYLDGQMAPDVAVRLAWDKLSGFMLANTRQNDLLMFAELAGDAPYAS 160 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 D + +L+P+++ SEL+ +F+IGFL+ LPFL+IDM++A+I+MA+GMMML P + Sbjct: 161 DA----EVPVAVLLPAYITSELKTAFQIGFLLFLPFLVIDMVIASILMALGMMMLSPMIV 216 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW+L + +L SF Sbjct: 217 SLPFKLLLFVLVDGWALTMGSLASSF 242 >gi|302874603|ref|YP_003843236.1| flagellar biosynthetic protein FliP [Clostridium cellulovorans 743B] gi|307690786|ref|ZP_07633232.1| flagellar biosynthesis protein FliP [Clostridium cellulovorans 743B] gi|302577460|gb|ADL51472.1| flagellar biosynthetic protein FliP [Clostridium cellulovorans 743B] Length = 257 Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 85/193 (44%), Positives = 130/193 (67%), Gaps = 4/193 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +L+ +T F R IV S L+ +G PP+ V+I L+LF+TF+VMSPT+ + +Q Sbjct: 68 PSILLTMTSFTRISIVLSFLKNAIGTQQTPPSQVLIGLSLFLTFFVMSPTISKVNTNALQ 127 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P +NNQI++ AI FM TR+KDL LF D+ + TK + ++ ++ Sbjct: 128 PYLNNQISQQQAIDIGTTEMKTFMLKQTRKKDLKLFRDIRGVAEE----TKPEDLKMEVV 183 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 IPSF+ISEL+ +F IGF I +PFLIID +VA+++M+MGM M+ P +S+PFK++ F+++D Sbjct: 184 IPSFIISELKTAFTIGFFIYIPFLIIDFVVASVLMSMGMFMISPMMVSIPFKILLFIMVD 243 Query: 233 GWSLLVENLVKSF 245 GW+L+V++LV SF Sbjct: 244 GWNLIVKSLVLSF 256 >gi|255021382|ref|ZP_05293430.1| Flagellar biosynthesis protein fliP [Acidithiobacillus caldus ATCC 51756] gi|254969245|gb|EET26759.1| Flagellar biosynthesis protein fliP [Acidithiobacillus caldus ATCC 51756] Length = 223 Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 86/207 (41%), Positives = 137/207 (66%), Gaps = 4/207 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++T T+L P LL+M+T F R IIV S+L+ +G +PP+ V++ LALF+TF+VM Sbjct: 20 IQTLLFMTVLVFLPALLLMMTAFTRIIIVLSLLKQALGSTQMPPSQVMVGLALFLTFFVM 79 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +P + +QPL +N+I A+ + P FM + TR DL+LF+ + S H+ Sbjct: 80 APVFQQINTEALQPLNDNKIDLVQAMAKAEGPLRNFMLSQTRPDDLALFVKL--SGHKAL 137 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + K +L+P+F+ SEL+ F+IGFLI +PF+IID++VA ++M++GMMML P ++ Sbjct: 138 E--KPSDTPLSLLVPAFITSELKTGFQIGFLIFIPFVIIDLVVAAVLMSLGMMMLSPVTV 195 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246 S P K++ FVL+DGW L++ +LV+SF+ Sbjct: 196 SFPLKLMLFVLVDGWDLVIGSLVQSFV 222 >gi|172057873|ref|YP_001814333.1| flagellar biosynthetic protein FliP [Exiguobacterium sibiricum 255-15] gi|171990394|gb|ACB61316.1| flagellar biosynthetic protein FliP [Exiguobacterium sibiricum 255-15] Length = 222 Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 83/193 (43%), Positives = 127/193 (65%), Gaps = 4/193 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP LLI++TCF R I+V S +R+ +G PPN +++ LALF+T +VM+P L + Sbjct: 32 APSLLILMTCFTRVIVVLSFVRSALGTQQTPPNQLLVGLALFITLFVMAPVLTELNTTAL 91 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 QP M+ +I++ A + FM TR DL LF+ + K + I Sbjct: 92 QPYMDEKISQDEAFDQAGGTMKRFMSQYTRSNDLELFLKYGNYEKPE----KVEDIPLVA 147 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 L+P++ ISEL+ +F+IGF+I +PFL+IDM+V++++M+MGMMMLPP I+LPFK++ F+L+ Sbjct: 148 LVPAYAISELKTAFQIGFMIFIPFLVIDMVVSSVLMSMGMMMLPPVMIALPFKLLLFILV 207 Query: 232 DGWSLLVENLVKS 244 DGW L+VE+L+ S Sbjct: 208 DGWHLIVESLLVS 220 >gi|83589638|ref|YP_429647.1| flagellar biosynthesis protein FliP [Moorella thermoacetica ATCC 39073] gi|83572552|gb|ABC19104.1| flagellar biosynthetic protein FliP [Moorella thermoacetica ATCC 39073] Length = 317 Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 84/186 (45%), Positives = 127/186 (68%), Gaps = 4/186 (2%) Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R I+V S +R+ + PPN ++I LALF+TF++M+P ++ I P + +I Sbjct: 136 TSFTRIIVVLSFVRSALATQQTPPNQILIGLALFLTFFIMAPVYNQVKTQAIDPYLAGRI 195 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 T+ A+ A P FM TREKDL+LF+ M+ + T D + +LIP+F+IS Sbjct: 196 TQEQALAAGARPVREFMYRQTREKDLALFVHMSGMAQPRT----RDDVPLHVLIPAFIIS 251 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+ +F++GFLI +PFLIID+++A+ +MAMGM M+PP ISLPFK++ FVL+DGW L+V+ Sbjct: 252 ELKTAFQMGFLIYIPFLIIDLVIASTLMAMGMFMVPPVMISLPFKLMLFVLVDGWYLVVK 311 Query: 240 NLVKSF 245 +L++SF Sbjct: 312 SLLESF 317 >gi|114562370|ref|YP_749883.1| flagellar biosynthesis protein FliP [Shewanella frigidimarina NCIMB 400] gi|114333663|gb|ABI71045.1| flagellar biosynthetic protein FliP [Shewanella frigidimarina NCIMB 400] Length = 253 Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 84/201 (41%), Positives = 132/201 (65%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T +S P ++IM+T F R I+V SILR +G+ P N V+I ++LFMTF++M+P D Sbjct: 55 LMTAMSFIPAMVIMLTSFTRIIVVLSILRQALGLQQTPSNQVLIGISLFMTFFIMAPVFD 114 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + ++P +N +T T A EP FM + R DL F+++ S ++ DI Sbjct: 115 KIYAEAVEPYINETMTLTQAYDVGKEPIKTFMLSQVRTTDLQTFIEI--SGYK--DIQSP 170 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + ++IP+F+ SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK Sbjct: 171 EQAPMSVVIPAFITSELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFK 230 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW L++ L SF Sbjct: 231 IMLFVLVDGWGLVMGTLANSF 251 >gi|332305669|ref|YP_004433520.1| flagellar biosynthetic protein FliP [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172998|gb|AEE22252.1| flagellar biosynthetic protein FliP [Glaciecola agarilytica 4H-3-7+YE-5] Length = 251 Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 87/209 (41%), Positives = 134/209 (64%), Gaps = 3/209 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 T ++ I T LS+ P ++M+T F R IIV SILR +G+ P N ++I ++LF++ Sbjct: 42 TMTLQVVAIMTALSLLPAFIMMMTSFTRIIIVLSILRQAIGLQQSPSNQILIGVSLFLSM 101 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 ++M+P ++ E +QP +N QIT A + EP FM TR KDL F+++ Sbjct: 102 FIMAPVFEKINETALQPYLNEQITSIQAYELAKEPLRGFMLAQTRVKDLETFVEIGGYED 161 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 + + + ILIP+F+ SEL+ +F+IGF++ +PFLI+D++VA+I+MAMGMMML P Sbjct: 162 Q---FQEPADVPMNILIPAFVTSELKTAFQIGFMLFIPFLILDLVVASILMAMGMMMLSP 218 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +SLPFK++ FVL+DGW+L+ L SF Sbjct: 219 MIVSLPFKLMLFVLVDGWNLIFGTLANSF 247 >gi|220934504|ref|YP_002513403.1| flagellar biosynthetic protein FliP [Thioalkalivibrio sp. HL-EbGR7] gi|219995814|gb|ACL72416.1| flagellar biosynthetic protein FliP [Thioalkalivibrio sp. HL-EbGR7] Length = 247 Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 88/193 (45%), Positives = 129/193 (66%), Gaps = 4/193 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P LIM+T F R IIV +ILR G+G P N ++I LALF+T +VM+P DR IQ Sbjct: 57 PSALIMMTSFTRIIIVLAILRQGLGTTQTPSNQILIGLALFLTLFVMTPVFDRIHVEAIQ 116 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P M ++ A+Q ++P FM TRE DL++F A S R + D + + +L Sbjct: 117 PYMEESLSMEEAVQTASQPIRQFMLAQTRESDLAMF---ARISGREGFESPED-VPFTLL 172 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 + SF+ SEL+ +F+IGF++++PFLIID++VA+++M+MGM+ML P ISLPFK++ FVL+D Sbjct: 173 MASFLTSELKTAFQIGFMLLIPFLIIDLVVASVLMSMGMVMLSPLIISLPFKIMLFVLVD 232 Query: 233 GWSLLVENLVKSF 245 GW+L++ L SF Sbjct: 233 GWALIMGTLAASF 245 >gi|188586035|ref|YP_001917580.1| flagellar biosynthetic protein FliP [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350722|gb|ACB84992.1| flagellar biosynthetic protein FliP [Natranaerobius thermophilus JW/NM-WN-LF] Length = 255 Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 89/193 (46%), Positives = 127/193 (65%), Gaps = 4/193 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P LLI+ T F R +IV S +R + +PPN V+I LALF+TF++MSP + + Sbjct: 66 PALLILTTSFTRVVIVLSFIRNALATQQMPPNQVLIGLALFLTFFIMSPVWGDVYQEAWE 125 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P IT+ AI+ EP FM TRE DL+LF++ + + T + + ++ Sbjct: 126 PYREGDITQEEAIENGLEPVREFMYQQTREDDLALFVEYSDIENPAT----IEDVPTHVI 181 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 IP+F+ISEL+ +F+IGF+I +PFLIIDMIVA+ +M+MGM+MLPP ISLPFKV+ FVL+D Sbjct: 182 IPAFVISELKTAFQIGFMIFVPFLIIDMIVASTLMSMGMLMLPPVMISLPFKVLLFVLVD 241 Query: 233 GWSLLVENLVKSF 245 GW L+ +L+ SF Sbjct: 242 GWFLITRSLLISF 254 >gi|304321125|ref|YP_003854768.1| flagellar biosynthetic protein FliP [Parvularcula bermudensis HTCC2503] gi|303300027|gb|ADM09626.1| flagellar biosynthetic protein FliP [Parvularcula bermudensis HTCC2503] Length = 246 Score = 172 bits (435), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 81/194 (41%), Positives = 125/194 (64%), Gaps = 3/194 (1%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +L+M+TC P +IVFS LR +G+ PP+++I++LALF+TF+VM P ++ E GI Sbjct: 54 APGILMMITCLPLMVIVFSFLRQALGIPQSPPSMMIMALALFLTFFVMEPVFQQAWEAGI 113 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 P +I E TA + PF VFM + ++ ++ S D + + + Sbjct: 114 APYQEGEIDEQTAFREAIAPFRVFMEARVHDSTIA---ALSESLPERWDEDVMETVPLSL 170 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 L+PSFM+SE++ +F+IGF + LPFL ID++ A ++MAMGMMM+PP +SLPFK+ FFV+ Sbjct: 171 LVPSFMLSEIKTAFQIGFAVFLPFLAIDLVTAAVLMAMGMMMVPPAVVSLPFKLAFFVMA 230 Query: 232 DGWSLLVENLVKSF 245 DGW+ L L++ + Sbjct: 231 DGWTKLSAALLRGY 244 >gi|114320138|ref|YP_741821.1| flagellar biosynthesis protein FliP [Alkalilimnicola ehrlichii MLHE-1] gi|114226532|gb|ABI56331.1| flagellar biosynthetic protein FliP [Alkalilimnicola ehrlichii MLHE-1] Length = 250 Score = 172 bits (435), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 85/188 (45%), Positives = 121/188 (64%), Gaps = 4/188 (2%) Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 M+T F R IIV +ILR MG S P N V+I LALF+T +VM+P + + P + Sbjct: 65 MMTSFTRIIIVLAILRQAMGTASTPSNQVLIGLALFLTLFVMAPVFQEVHDTALAPYLAE 124 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177 ++ A++ +EP FM TRE DL LF+ +A + D + + +L+P+FM Sbjct: 125 EMAPDEALEAASEPMRGFMIAQTRESDLGLFLRIAGYDQ----VDSPDDVPFTVLVPAFM 180 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 SEL+ +F IGF+I LPFL+ID++VA+ +M+MGM+ML P ISLPFK++ FVL+DGWSLL Sbjct: 181 TSELKTAFTIGFIIYLPFLVIDLVVASTLMSMGMLMLSPMIISLPFKILLFVLVDGWSLL 240 Query: 238 VENLVKSF 245 + L SF Sbjct: 241 MGTLASSF 248 >gi|163750540|ref|ZP_02157778.1| flagellar biosynthesis protein [Shewanella benthica KT99] gi|161329695|gb|EDQ00684.1| flagellar biosynthesis protein [Shewanella benthica KT99] Length = 248 Score = 172 bits (435), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 96/248 (38%), Positives = 148/248 (59%), Gaps = 9/248 (3%) Query: 2 IRYCF-FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIF---TILSIAPILLI 57 + YCF +L L++P FA + + + T T I T +S P ++I Sbjct: 4 LSYCFILSLLLISPG-AFALDGVLPALIVTTTADGGTQYSVTMQILLLMTAMSFLPAMII 62 Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 M+T F R I+V SILR +G+ P N V+I +++FMTF++M+P D+ +QP + Sbjct: 63 MLTSFTRIIVVLSILRQAIGLQQTPSNQVLIGISMFMTFFIMAPVFDKIYAEAVQPYIAE 122 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177 + A EP FM TR DL F+++ S ++N I + + +LIPSF+ Sbjct: 123 TMNIEQAFNIGKEPIKTFMLAQTRVTDLDTFIEI--SGYQN--INSPEDVPMSVLIPSFI 178 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK++ FVL+DGWSL+ Sbjct: 179 TSELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLV 238 Query: 238 VENLVKSF 245 + L SF Sbjct: 239 MGTLANSF 246 >gi|163781853|ref|ZP_02176853.1| flagellar biosynthetic protein FliP [Hydrogenivirga sp. 128-5-R1-1] gi|159883073|gb|EDP76577.1| flagellar biosynthetic protein FliP [Hydrogenivirga sp. 128-5-R1-1] Length = 225 Score = 171 bits (434), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 87/194 (44%), Positives = 128/194 (65%), Gaps = 1/194 (0%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +LIM T F R ++V S+LR +G+ VPPN VI+SLALF+TF++M P + +Q Sbjct: 31 PSILIMTTSFIRIVVVLSVLRQALGVPQVPPNQVIVSLALFLTFFIMKPVFENINTNALQ 90 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH-SSHRNTDITKNDHIEYRI 171 P M QI++ RV FM TR+ + +FM++A I K I I Sbjct: 91 PYMKEQISDQEFFNRVTGSLKGFMLKQTRKDTVEVFMEVAKLKKEEREKIRKPSDIPLSI 150 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 LIP+FM+SEL +FEI FL+ +PFLI+D++VA+I+++MG++M+PP ISLPFK++ FVL Sbjct: 151 LIPAFMVSELTTAFEIVFLLYIPFLIVDIVVASILISMGIIMIPPQIISLPFKIMLFVLA 210 Query: 232 DGWSLLVENLVKSF 245 +GW L+V +LV+S+ Sbjct: 211 NGWELVVLSLVRSY 224 >gi|332533116|ref|ZP_08408985.1| flagellar biosynthetic protein FliP [Pseudoalteromonas haloplanktis ANT/505] gi|332037398|gb|EGI73852.1| flagellar biosynthetic protein FliP [Pseudoalteromonas haloplanktis ANT/505] Length = 246 Score = 171 bits (434), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 85/206 (41%), Positives = 130/206 (63%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ I T LS P +IM+T F R I+V +ILR +G+ P N V++ ++LF++ ++M Sbjct: 41 LQVLAIMTALSFIPAAIIMMTSFTRIIVVLAILRQAIGLQQTPSNQVLLGMSLFLSIFIM 100 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +P + E I+P +N Q+T A++ EP FM + R KDL F +A N+ Sbjct: 101 APIYQQVNERAIEPYLNEQVTSVEALELAKEPMKAFMLSQVRLKDLETFAKIAGYDQLNS 160 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 +LIP+F+ SEL+ +F IGF+ +PFLI+D++VA+++MAMGMMML P + Sbjct: 161 P----QDTPLIVLIPAFVTSELQTAFIIGFMFFIPFLIVDLVVASVLMAMGMMMLSPMIV 216 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGWSL++ L KSF Sbjct: 217 SLPFKIMLFVLVDGWSLVMGTLAKSF 242 >gi|307546958|ref|YP_003899437.1| flagellar biosynthesis protein FliP [Halomonas elongata DSM 2581] gi|307218982|emb|CBV44252.1| flagellar biosynthesis protein FliP [Halomonas elongata DSM 2581] Length = 273 Score = 171 bits (434), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 88/193 (45%), Positives = 126/193 (65%), Gaps = 4/193 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P L+M+T F R IIV S+LRT MG + PPN V++ LALF+TF++M+P Sbjct: 83 PAALLMMTSFTRIIIVLSLLRTAMGTQATPPNQVLLGLALFLTFFIMAPVFGEVHAQAWV 142 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 PL N I +++ P FM TRE DL+LF +A ++ + RIL Sbjct: 143 PLSNGDINFPEFLRQAQGPLREFMMAQTREPDLALFARLADIG----ELQGPADVPMRIL 198 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 +PSF+ SEL+ +F+IGF I +PFLIID++VA+ +M++GMMM+PP +ISLPFK++ FVL+D Sbjct: 199 VPSFVTSELKTAFQIGFTIFIPFLIIDLVVASTLMSLGMMMVPPITISLPFKLMLFVLVD 258 Query: 233 GWSLLVENLVKSF 245 GW LL+ +L +SF Sbjct: 259 GWQLLIGSLAESF 271 >gi|322833206|ref|YP_004213233.1| flagellar biosynthetic protein FliP [Rahnella sp. Y9602] gi|321168407|gb|ADW74106.1| flagellar biosynthetic protein FliP [Rahnella sp. Y9602] Length = 260 Score = 171 bits (433), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 89/206 (43%), Positives = 138/206 (66%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++T T L++ P +L+M T F R IIV +LR +G S PPN V++ L LF+TF+VM Sbjct: 57 IQTLVFITTLTLLPAMLLMCTSFTRIIIVLGLLRNALGTPSAPPNQVLLGLGLFLTFFVM 116 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +P D+ QP N+IT A+ + A+P FM TRE DL+L+ +A+ Sbjct: 117 APVFDKIYSDAYQPFSENKITMQEAMDKGAQPLRQFMLRQTRESDLALYARLANIP---- 172 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + RIL+P+++ SEL+ +F+IGF + +PF+IID++VA+++MA+GMMM+PP +I Sbjct: 173 PLAGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFMIIDLVVASVLMALGMMMVPPATI 232 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 233 SLPFKLMLFVLVDGWQLLLGSLAQSF 258 >gi|226944502|ref|YP_002799575.1| flagellar biosynthetic protein [Azotobacter vinelandii DJ] gi|226719429|gb|ACO78600.1| flagellar biosynthetic protein [Azotobacter vinelandii DJ] Length = 252 Score = 171 bits (433), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 89/193 (46%), Positives = 135/193 (69%), Gaps = 4/193 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P LL+M+T F R IIV +LRT +G + PPN V++ LALF+T ++MSP LDR+ + Sbjct: 62 PALLLMMTAFTRIIIVLGLLRTAIGTPAAPPNQVLLGLALFLTLFIMSPVLDRTYQSAWL 121 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P ++I ++ ++PF FM TRE DL+LF +A R ++ + + R+L Sbjct: 122 PFSRDEIGFEQFLETGSQPFREFMLAQTRESDLALFARLA----RLGELEGPEQVPLRVL 177 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 +P+F+ SEL+ +F+IGF I +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+D Sbjct: 178 MPAFVTSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVD 237 Query: 233 GWSLLVENLVKSF 245 GW LL+ +L +SF Sbjct: 238 GWQLLIGSLAQSF 250 >gi|220913717|ref|YP_002489026.1| flagellar biosynthetic protein FliP [Arthrobacter chlorophenolicus A6] gi|219860595|gb|ACL40937.1| flagellar biosynthetic protein FliP [Arthrobacter chlorophenolicus A6] Length = 262 Score = 171 bits (433), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 90/214 (42%), Positives = 136/214 (63%), Gaps = 5/214 (2%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D ST +V GI T+LS+AP LL+M+T F + +V ++ R + + S+PPN V+ LA Sbjct: 53 DGQPSTAVVTLIGI-TLLSVAPALLLMMTSFTKIFVVLAMTRNALSLPSIPPNQVLAGLA 111 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 LF++ +VM P L +QP +N + A A P FM +TRE+D++L Sbjct: 112 LFLSLFVMWPVLTEINTDAVQPYLNGNLDFNGAFSAGAGPLQQFMLGHTREEDIALMTRA 171 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 A R + + + LIP+FMISELR +F IGF+I +PFL+ID++V+ +M+MGM Sbjct: 172 A----RMPNPENPGAVPLQTLIPAFMISELRAAFIIGFVIFIPFLVIDLVVSAALMSMGM 227 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMLPP ISLPFK++ F+L+DGW L++ +L++S+ Sbjct: 228 MMLPPVMISLPFKILLFILVDGWGLVITSLIQSY 261 >gi|291562035|emb|CBL40851.1| flagellar biosynthetic protein FliP [butyrate-producing bacterium SS3/4] Length = 218 Score = 171 bits (433), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 83/203 (40%), Positives = 132/203 (65%), Gaps = 8/203 (3%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T ++ P +++M++ F R II+ S R MG+ PPN+V+ +ALF++ Y+MSP + Sbjct: 21 LLTFAALLPSIVVMMSSFMRIIIILSFTRNAMGVQQTPPNMVLTGMALFLSLYIMSPVIG 80 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + + +P N +IT+ A+ R+A+P FM NT + L F+ M+ K Sbjct: 81 QINTVAYEPYKNGEITQQEAVSRMADPLKQFMLRNTEKDTLDHFVQMSKQE------VKK 134 Query: 165 DHIEY--RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222 D EY +++P+FM SEL++ F GFLI LPFL+ID++V+T +M+MGM+MLPPT +SLP Sbjct: 135 DVKEYPLTVVVPAFMTSELKKGFLAGFLIYLPFLLIDIVVSTTLMSMGMVMLPPTMVSLP 194 Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245 FK++ F+ ++GW LL +LV+SF Sbjct: 195 FKLLLFITVNGWELLFSSLVQSF 217 >gi|148553144|ref|YP_001260726.1| flagellar biosynthesis protein FliP [Sphingomonas wittichii RW1] gi|148498334|gb|ABQ66588.1| flagellar biosynthetic protein FliP [Sphingomonas wittichii RW1] Length = 278 Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 86/201 (42%), Positives = 132/201 (65%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + ++L++ P L++M++ F R IIV S+LR +G+ PPN V++ LA+F++ +VM P++D Sbjct: 80 LMSLLTVLPSLVLMMSSFTRIIIVLSLLRQALGLQQTPPNQVLVGLAMFLSLFVMRPSID 139 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + +P QIT AI R FM TR+ DL LF D+A + + Sbjct: 140 QINADAFKPYGAGQITIEEAITRSGAVLHRFMVLQTRQTDLKLFADLAKAPK----FARP 195 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 I + IL+P+F+ SEL+ +F+IGFLI LPFLIID++VA+ +M++GMMML P IS+PFK Sbjct: 196 ADIPFSILLPAFVTSELKTAFQIGFLIFLPFLIIDLVVASTLMSLGMMMLSPAIISMPFK 255 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW+L + +L SF Sbjct: 256 LLLFVLVDGWALTMGSLAASF 276 >gi|89895724|ref|YP_519211.1| flagellar biosynthesis protein FliP [Desulfitobacterium hafniense Y51] gi|89335172|dbj|BAE84767.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 236 Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 106/235 (45%), Positives = 154/235 (65%), Gaps = 6/235 (2%) Query: 11 LVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70 LV + V A D A+ + ST + + T+LSIAP +L+++T F R IIV S Sbjct: 7 LVNTDAVLAAGLTLDFGTTTAEQTSSTLQILL--LLTVLSIAPAILVLMTSFTRTIIVLS 64 Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130 +R +G +PPN V+I L+LF+TF+VM+PT + +QP M NQIT+ A+Q+ Sbjct: 65 FVRNALGTQQLPPNQVLIGLSLFLTFFVMAPTWNEINTQALQPYMQNQITQAEALQQAEA 124 Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190 P FM TREKDL+LF+ +A T I +LIP+F+ISEL+ +F++GF Sbjct: 125 PLRQFMFEQTREKDLTLFVGLARMEQPQT----YGDIPTYVLIPAFVISELKTAFQMGFA 180 Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 I +PF++IDM+VA+++M+MGMMMLPP +SLPFK++ FVL+DGW L+V++LV SF Sbjct: 181 IFIPFMVIDMLVASVLMSMGMMMLPPMMVSLPFKILLFVLVDGWHLVVQSLVTSF 235 >gi|53724243|ref|YP_104210.1| flagellar biosynthesis protein FliP [Burkholderia mallei ATCC 23344] gi|67641568|ref|ZP_00440344.1| flagellar biosynthetic protein FliP [Burkholderia mallei GB8 horse 4] gi|167001619|ref|ZP_02267413.1| flagellar biosynthetic protein FliP [Burkholderia mallei PRL-20] gi|254201283|ref|ZP_04907647.1| flagellar biosynthetic protein FliP [Burkholderia mallei FMH] gi|254206625|ref|ZP_04912976.1| flagellar biosynthetic protein FliP [Burkholderia mallei JHU] gi|254357358|ref|ZP_04973632.1| flagellar biosynthetic protein FliP [Burkholderia mallei 2002721280] gi|52427666|gb|AAU48259.1| flagellar biosynthetic protein FliP, interruption-C [Burkholderia mallei ATCC 23344] gi|147747177|gb|EDK54253.1| flagellar biosynthetic protein FliP [Burkholderia mallei FMH] gi|147752167|gb|EDK59233.1| flagellar biosynthetic protein FliP [Burkholderia mallei JHU] gi|148026422|gb|EDK84507.1| flagellar biosynthetic protein FliP [Burkholderia mallei 2002721280] gi|238522521|gb|EEP85965.1| flagellar biosynthetic protein FliP [Burkholderia mallei GB8 horse 4] gi|243062629|gb|EES44815.1| flagellar biosynthetic protein FliP [Burkholderia mallei PRL-20] Length = 175 Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 79/176 (44%), Positives = 118/176 (67%), Gaps = 4/176 (2%) Query: 70 SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129 S+LR +G S PPN V++ LALF+T +VMSP LDR+ +P + A+QR Sbjct: 3 SLLRQAIGTASTPPNQVLVGLALFLTLFVMSPVLDRAYNDAYKPFSEGTLQMDQAVQRGT 62 Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189 PF FM TRE DL+LF ++ ++ + + + +L+P+F+ SEL+ F+IGF Sbjct: 63 APFKAFMLKQTRETDLALFAKISKAAP----MQGPEDVPLSLLVPAFVTSELKTGFQIGF 118 Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 I +PFLIIDM+VA+++M+MGMMM+ P ++SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 119 TIFIPFLIIDMVVASVLMSMGMMMVSPATVSLPFKLMLFVLVDGWQLLIGSLAQSF 174 >gi|54294676|ref|YP_127091.1| flagellar biosynthesis protein FliP [Legionella pneumophila str. Lens] gi|53754508|emb|CAH15992.1| Flagellar biosynthetic protein FliP [Legionella pneumophila str. Lens] Length = 249 Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 95/199 (47%), Positives = 137/199 (68%), Gaps = 5/199 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T+L++ P LL+ +T F R IIV SILR +GM P N ++I +ALFMT++VMSP ++ Sbjct: 53 TLLTVLPGLLMAMTSFTRIIIVLSILRQAIGMAQTPTNQILIGIALFMTYFVMSPVFNKI 112 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 E IQP MN +I + A+ +P FM N TR+ DLSLF AH+ + D Sbjct: 113 NETAIQPYMNERIDFSLALSNAQKPLRQFMLNQTRKNDLSLFEKFAHNVPKTLD-----E 167 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 I +LIP+F+ SEL+ +F+IGF++ LPFLIID++V++++MAMGMMML P ISLPFK++ Sbjct: 168 IPMSVLIPAFITSELKTAFQIGFILFLPFLIIDLVVSSLLMAMGMMMLSPLIISLPFKIM 227 Query: 227 FFVLIDGWSLLVENLVKSF 245 FV++DGW+L++ +L SF Sbjct: 228 LFVMVDGWTLVLGSLASSF 246 >gi|119469996|ref|ZP_01612801.1| flagellar biosynthesis protein P [Alteromonadales bacterium TW-7] gi|119446706|gb|EAW27979.1| flagellar biosynthesis protein P [Alteromonadales bacterium TW-7] Length = 246 Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 83/206 (40%), Positives = 131/206 (63%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ I T LS P +IM+T F R I+V +ILR +G+ P N V++ ++LF++ ++M Sbjct: 41 LQVLAIMTALSFIPAAIIMMTSFTRIIVVLAILRQAIGLQQTPSNQVLLGMSLFLSIFIM 100 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +P + ++ I+P +N Q+T A++ EP FM + R KDL F +A + Sbjct: 101 APIYQKVNDVAIEPYLNEQVTSVQALELAKEPMKAFMLSQVRLKDLETFAKIAGYDKLES 160 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + +LIP+F+ SEL+ +F IGF+ +PFLI+D++VA+++MAMGMMML P + Sbjct: 161 P----EETPLIVLIPAFVTSELQTAFIIGFMFFIPFLIVDLVVASVLMAMGMMMLSPMIV 216 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGWSL++ L KSF Sbjct: 217 SLPFKIMLFVLVDGWSLVMGTLAKSF 242 >gi|88858098|ref|ZP_01132740.1| flagellar biosynthesis [Pseudoalteromonas tunicata D2] gi|88819715|gb|EAR29528.1| flagellar biosynthesis [Pseudoalteromonas tunicata D2] Length = 247 Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 94/251 (37%), Positives = 151/251 (60%), Gaps = 14/251 (5%) Query: 1 MIRYCFF-ALFLVTPELVFAKSSLHDV-----MNIPADLSISTWIVRTFGIFTILSIAPI 54 MI++ ALF ++P L A+ L + + D S+S ++ I T LS P Sbjct: 1 MIKWIILIALFTLSPSLS-AEQGLQALTVTTNADGTQDYSVS---LQVLAIMTALSFIPA 56 Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114 +IM+T F R I+V +ILR +G+ S P N V++ +++FM+ ++M+P + E I P Sbjct: 57 AVIMMTSFTRIIVVLAILRQAIGLQSTPSNQVLVGMSVFMSIFIMAPIYQQIHEAAIDPY 116 Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174 + ++T A+++ +P FM TR DL F +A + K + + ++IP Sbjct: 117 LKEELTSIQALEKAKDPLKTFMLRQTRISDLETFAQIAGLEKLD----KPEDAPFIVVIP 172 Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234 +F+ SEL+ +F IGF+ +PFLI+D++VA+++MAMGMMML P +SLPFK++ FVL+DGW Sbjct: 173 AFITSELQTAFIIGFMFFIPFLIVDLVVASVLMAMGMMMLSPMIVSLPFKIMLFVLVDGW 232 Query: 235 SLLVENLVKSF 245 SL++ L KSF Sbjct: 233 SLVMGTLAKSF 243 >gi|254497497|ref|ZP_05110290.1| truncated flagellar biosynthesis protein FliP [Legionella drancourtii LLAP12] gi|254353312|gb|EET12054.1| truncated flagellar biosynthesis protein FliP [Legionella drancourtii LLAP12] Length = 189 Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 85/191 (44%), Positives = 129/191 (67%), Gaps = 5/191 (2%) Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114 +L+ +T F R IIV SILR +G+ P N V+I +ALFMT++VM+PT ++ + +QP Sbjct: 1 MLMAMTAFTRIIIVLSILRQAIGLAQAPTNQVLIGIALFMTYFVMAPTFNKINDTALQPY 60 Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174 + I A+ EP FM N TR+ DL+LF A+ + ND + ++IP Sbjct: 61 LAETIKFPQAMANAQEPLRDFMLNQTRKNDLALFEKFANKQPASL----ND-VPMSVIIP 115 Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234 +F+ SEL+ +F+IGF++ LPFLIID++V++++MAMGMMML P ISLPFK++ FV++DGW Sbjct: 116 AFITSELKTAFQIGFILFLPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIMLFVMVDGW 175 Query: 235 SLLVENLVKSF 245 +L++ +L SF Sbjct: 176 TLILGSLASSF 186 >gi|260752858|ref|YP_003225751.1| flagellar biosynthesis protein FliP [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552221|gb|ACV75167.1| flagellar biosynthetic protein FliP [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 316 Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 87/194 (44%), Positives = 122/194 (62%), Gaps = 4/194 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +++M+T F R IIV S+LR +G+ PPN V+I LALF++ +VM P LD+ Sbjct: 126 PSIILMMTSFTRIIIVLSLLRQAIGLQQTPPNQVLIGLALFLSLFVMRPVLDQINTTAFS 185 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P +I AI R FM TR+ DL LF D+AH + + I + +L Sbjct: 186 PYGRGEIQIEEAIMRSGTALHGFMTKQTRKNDLQLFTDLAH----HPRYENAESIPFTVL 241 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 +PSF+ SEL+ +FEIGFLI LPF+IID++VA + A+GMMML P IS PFK++ F+++D Sbjct: 242 VPSFVTSELKTAFEIGFLIFLPFIIIDIVVACTLTALGMMMLSPQIISAPFKLLLFIMVD 301 Query: 233 GWSLLVENLVKSFI 246 GW+L V +L SFI Sbjct: 302 GWALTVGSLAGSFI 315 >gi|241761180|ref|ZP_04759269.1| flagellar biosynthetic protein FliP [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374799|gb|EER64260.1| flagellar biosynthetic protein FliP [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 316 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 87/194 (44%), Positives = 122/194 (62%), Gaps = 4/194 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +++M+T F R IIV S+LR +G+ PPN V+I LALF++ +VM P LD+ Sbjct: 126 PSIILMMTSFTRIIIVLSLLRQAIGLQQTPPNQVLIGLALFLSLFVMRPVLDQINTTAFS 185 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P +I AI R FM TR+ DL LF D+AH + + I + +L Sbjct: 186 PYGRGEIQIEEAIMRSGTALHGFMTKQTRKNDLQLFTDLAH----HPRYENAESIPFTVL 241 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 +PSF+ SEL+ +FEIGFLI LPF+IID++VA + A+GMMML P IS PFK++ F+++D Sbjct: 242 VPSFVTSELKTAFEIGFLIFLPFIIIDIVVACTLTALGMMMLSPQIISAPFKLLLFIMVD 301 Query: 233 GWSLLVENLVKSFI 246 GW+L V +L SFI Sbjct: 302 GWALTVGSLAGSFI 315 >gi|56551543|ref|YP_162382.1| flagellar biosynthesis protein FliP [Zymomonas mobilis subsp. mobilis ZM4] gi|56543117|gb|AAV89271.1| flagellar biosynthetic protein FliP [Zymomonas mobilis subsp. mobilis ZM4] Length = 316 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 87/194 (44%), Positives = 122/194 (62%), Gaps = 4/194 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +++M+T F R IIV S+LR +G+ PPN V+I LALF++ +VM P LD+ Sbjct: 126 PSIILMMTSFTRIIIVLSLLRQAIGLQQTPPNQVLIGLALFLSLFVMRPVLDQINTTAFS 185 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P +I AI R FM TR+ DL LF D+AH + + I + +L Sbjct: 186 PYGRGEIQIEEAIMRSGTALHGFMTKQTRKNDLQLFTDLAH----HPRYENAESIPFTVL 241 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 +PSF+ SEL+ +FEIGFLI LPF+IID++VA + A+GMMML P IS PFK++ F+++D Sbjct: 242 VPSFVTSELKTAFEIGFLIFLPFIIIDIVVACTLTALGMMMLSPQIISAPFKLLLFIMVD 301 Query: 233 GWSLLVENLVKSFI 246 GW+L V +L SFI Sbjct: 302 GWALTVGSLAGSFI 315 >gi|109899342|ref|YP_662597.1| flagellar biosynthesis protein FliP [Pseudoalteromonas atlantica T6c] gi|109701623|gb|ABG41543.1| flagellar biosynthetic protein FliP [Pseudoalteromonas atlantica T6c] Length = 251 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 85/209 (40%), Positives = 134/209 (64%), Gaps = 3/209 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 T ++ I T LS+ P ++M+T F R IIV SILR +G+ P N ++I ++LF++ Sbjct: 42 TMTLQVVAIMTALSLLPAFIMMMTSFTRIIIVLSILRQAIGLQQSPSNQILIGVSLFLSM 101 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 ++M+P ++ E +QP ++ QIT A + EP FM TR KDL F+++ Sbjct: 102 FIMAPVFEKINETALQPYLSEQITSIQAYELAKEPLRGFMLAQTRIKDLETFVEIGGYED 161 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 + + + +LIP+F+ SEL+ +F+IGF++ +PFLI+D++VA+I+MAMGMMML P Sbjct: 162 Q---FQEPADVPMNVLIPAFVTSELKTAFQIGFMLFIPFLILDLVVASILMAMGMMMLSP 218 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +SLPFK++ FVL+DGW+L+ L SF Sbjct: 219 MIVSLPFKLMLFVLVDGWNLIFGTLANSF 247 >gi|54297702|ref|YP_124071.1| flagellar biosynthesis protein FliP [Legionella pneumophila str. Paris] gi|53751487|emb|CAH12905.1| Flagellar biosynthetic protein FliP [Legionella pneumophila str. Paris] Length = 249 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 95/199 (47%), Positives = 137/199 (68%), Gaps = 5/199 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T+L++ P LL+ +T F R IIV SILR +GM P N ++I +ALFMT++VMSP ++ Sbjct: 53 TLLTVLPGLLMAMTSFTRIIIVLSILRQAIGMAQTPTNQILIGIALFMTYFVMSPVFNKI 112 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 E IQP MN +I + A+ +P FM N TR+ DLSLF AH+ + D Sbjct: 113 NETAIQPYMNERIDFSLALSNAQKPLRQFMLNQTRKNDLSLFEKFAHNVPKTLD-----E 167 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 I +LIP+F+ SEL+ +F+IGF++ LPFLIID++V++++MAMGMMML P ISLPFK++ Sbjct: 168 IPMSVLIPAFITSELKTAFQIGFVLFLPFLIIDLVVSSLLMAMGMMMLSPLIISLPFKIM 227 Query: 227 FFVLIDGWSLLVENLVKSF 245 FV++DGW+L++ +L SF Sbjct: 228 LFVMVDGWTLVLGSLASSF 246 >gi|309388834|gb|ADO76714.1| flagellar biosynthetic protein FliP [Halanaerobium praevalens DSM 2228] Length = 254 Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 86/194 (44%), Positives = 130/194 (67%), Gaps = 4/194 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP ++I+ T F R IIVFSIL+ + + ++PPN V+I +A+F+T ++M+P + + Sbjct: 64 APAIIILFTSFTRIIIVFSILKRALALNNMPPNQVLIGIAIFLTIFIMAPVWQGVNQDAL 123 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 QP + I+ A + P FM N E+ L+LF ++A + D + I Sbjct: 124 QPYLAQDISLEQAYENTITPVREFMFNQVDERSLALFTNIAEIERPES----RDDLPTYI 179 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 LIP+F+I+E++ +F+IGFLI +PFL+IDMIVA+I+M+MGMMMLPP ISLPFK++ FVL Sbjct: 180 LIPAFLINEIKIAFQIGFLIYIPFLMIDMIVASILMSMGMMMLPPVIISLPFKILLFVLA 239 Query: 232 DGWSLLVENLVKSF 245 DGW +L+ +LVK+F Sbjct: 240 DGWHILIGSLVKTF 253 >gi|289208347|ref|YP_003460413.1| flagellar biosynthetic protein FliP [Thioalkalivibrio sp. K90mix] gi|288943978|gb|ADC71677.1| flagellar biosynthetic protein FliP [Thioalkalivibrio sp. K90mix] Length = 256 Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 82/189 (43%), Positives = 124/189 (65%), Gaps = 4/189 (2%) Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116 IM+T F R ++V +ILR G+G P N ++I LA F+T +VM+P D E + P MN Sbjct: 70 IMMTAFTRILVVLAILRQGLGTTQTPSNQILIGLAFFLTLFVMAPVFDEIYETAVVPYMN 129 Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176 ++ +Q +P FM +TRE D+ +F ++ + D I R+L+P+F Sbjct: 130 EEMGTEEVLQAGVQPLREFMLAHTRESDIRMFAEINGIDGFD----DADDIPLRLLVPAF 185 Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236 + SEL+ +F+IGFLI++PFLIID++VA+++M+MGM+ML P ISLPFKV+ FVL+DGW+L Sbjct: 186 VTSELKTAFQIGFLILIPFLIIDLVVASVLMSMGMVMLSPLIISLPFKVMLFVLVDGWAL 245 Query: 237 LVENLVKSF 245 ++ L SF Sbjct: 246 MMNTLATSF 254 >gi|262273547|ref|ZP_06051361.1| flagellar biosynthesis protein FliP [Grimontia hollisae CIP 101886] gi|262222525|gb|EEY73836.1| flagellar biosynthesis protein FliP [Grimontia hollisae CIP 101886] Length = 243 Score = 169 bits (427), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 85/205 (41%), Positives = 130/205 (63%), Gaps = 4/205 (1%) Query: 41 RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100 + F + T+LS P +L+MVT F R IIV ILR +G+ PPN V++ +AL +T + M Sbjct: 42 QIFLLMTMLSFLPAMLLMVTSFTRIIIVLGILRQAIGLQQSPPNTVLVGIALILTLFTMR 101 Query: 101 PTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD 160 P L E ++P N ++ A+ +P FM TRE DL + +A+ Sbjct: 102 PVLTDIHENAVKPYQNGTLSLQQAVSVAEKPLKAFMLQQTRETDLDQILRIANEPPHQA- 160 Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220 + I+ +L+P+F++SEL+ +F+IGF++ +PFLIID++V++++MAMGMMML P IS Sbjct: 161 ---GEDIDLLLLMPAFVLSELKTAFQIGFMLFVPFLIIDIVVSSVLMAMGMMMLSPLIIS 217 Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245 LPFK++ FV++DGWS+LV L SF Sbjct: 218 LPFKLMIFVMVDGWSMLVGTLTASF 242 >gi|294140213|ref|YP_003556191.1| flagellar biosynthetic protein FliP [Shewanella violacea DSS12] gi|293326682|dbj|BAJ01413.1| flagellar biosynthetic protein FliP [Shewanella violacea DSS12] Length = 248 Score = 168 bits (426), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 84/199 (42%), Positives = 131/199 (65%), Gaps = 4/199 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T +S P ++IM+T F R I+V SILR +G+ P N V+I +++FMTF++M+P D+ Sbjct: 52 TAMSFLPAMIIMLTSFTRIIVVLSILRQAIGLQQTPSNQVLIGISMFMTFFIMAPVFDKI 111 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 + ++P + + A EP FM TR DL F+++ S ++N D + Sbjct: 112 YDEAVKPYIAETMDIEQAFNIGKEPIKTFMLAQTRLTDLDTFIEI--SGYQNID--SPED 167 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 + +LIPSF+ SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK++ Sbjct: 168 VPMSVLIPSFITSELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIM 227 Query: 227 FFVLIDGWSLLVENLVKSF 245 FVL+DGWSL++ L SF Sbjct: 228 LFVLVDGWSLVMGTLANSF 246 >gi|167630307|ref|YP_001680806.1| flagellar biosynthetic protein flip [Heliobacterium modesticaldum Ice1] gi|167593047|gb|ABZ84795.1| flagellar biosynthetic protein flip [Heliobacterium modesticaldum Ice1] Length = 243 Score = 168 bits (426), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 94/216 (43%), Positives = 148/216 (68%), Gaps = 7/216 (3%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P ++S S ++ + TILS+AP +LIM+TCF R I+V RT + + ++PPN V+I Sbjct: 34 PTEVSTS---LQILFLLTILSLAPSILIMMTCFTRIIVVLHFTRTALALQTMPPNQVLIG 90 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 L LF+TF++M+PT + +QP + +++ A+++ + P FM TREKDL+LF+ Sbjct: 91 LTLFLTFFIMAPTWSAINDQALQPYLAGTLSQEQALEKASTPLREFMLKQTREKDLALFV 150 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 +M+ T I +++IP+F++SEL+ +F+IG +I LPF++IDMIV +++M+M Sbjct: 151 NMSDMEQPQT----YRDIPIKVVIPAFILSELKTAFQIGAVIYLPFIVIDMIVGSVLMSM 206 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMMLPP ISLPFKV+ FVL+DGW L+V +L+ S+ Sbjct: 207 GMMMLPPMMISLPFKVLVFVLVDGWYLIVRSLILSY 242 >gi|157961199|ref|YP_001501233.1| flagellar biosynthesis protein FliP [Shewanella pealeana ATCC 700345] gi|157846199|gb|ABV86698.1| flagellar biosynthetic protein FliP [Shewanella pealeana ATCC 700345] Length = 249 Score = 168 bits (425), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 93/240 (38%), Positives = 145/240 (60%), Gaps = 8/240 (3%) Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIF---TILSIAPILLIMVTCFPRF 65 L L P FA++ + + + ST T I T LS P ++IM+T F R Sbjct: 13 LCLAAPA-AFAENGILPAVTVSTGADGSTQYSVTMQILLLMTALSFIPAMVIMLTSFTRI 71 Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 I+V SILR +G+ P N V+I +++FMTF++MSP D+ + +QP + + A Sbjct: 72 IVVLSILRQAIGLQQTPSNQVLIGISMFMTFFIMSPVFDKIYDQAVQPYIEQGMPLQDAF 131 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185 + P FM TR DL F+++ S ++N I + + ++IP+F+ SEL+ +F Sbjct: 132 TKGQGPLKDFMLAQTRLTDLDTFIEI--SGYQN--INEPEDAPMTVIIPAFITSELKTAF 187 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK++ FVL+DGWSL++ L SF Sbjct: 188 QIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVMGTLANSF 247 >gi|152990381|ref|YP_001356103.1| flagellar transport protein FliP [Nitratiruptor sp. SB155-2] gi|151422242|dbj|BAF69746.1| flagellar transport protein FliP [Nitratiruptor sp. SB155-2] Length = 236 Score = 168 bits (425), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 91/206 (44%), Positives = 146/206 (70%), Gaps = 5/206 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ +FTILS+AP +LI +T F R +IV +LR +G+ PPN VII+L+LF+TF++M Sbjct: 35 LKILALFTILSLAPAILITMTSFTRIVIVLGLLRQALGIPQSPPNQVIIALSLFLTFFIM 94 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P D+ +QP M +++ + A++ P F+ NNT++++L LF+D+ ++ ++ Sbjct: 95 KPVFDQIYVDAVQPYMQHKLNDMQAVEAAMRPIKKFLVNNTQKEELKLFLDINKTTPKDY 154 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 ND I +L+P+F++SE++ +FEI F+I LPFL+IDM+VA+I+M+MGMMM+PP I Sbjct: 155 ----ND-ISLSVLLPAFLVSEIKIAFEIAFVIFLPFLVIDMLVASILMSMGMMMIPPMMI 209 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK+I F+L DGW LL++ L+K + Sbjct: 210 SLPFKLILFILSDGWELLIKALIKGY 235 >gi|302878289|ref|YP_003846853.1| flagellar biosynthetic protein FliP [Gallionella capsiferriformans ES-2] gi|302581078|gb|ADL55089.1| flagellar biosynthetic protein FliP [Gallionella capsiferriformans ES-2] Length = 249 Score = 168 bits (425), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 91/206 (44%), Positives = 142/206 (68%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++T I T LS P +L+M+T F R IIV S+LR+ +G + PPN V+I L+LF+TF++M Sbjct: 46 LQTLLILTSLSFLPAMLLMMTSFTRIIIVLSMLRSALGTQASPPNQVLIGLSLFLTFFIM 105 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP D+ P N+I A+++ P FM TR+ DL+LF+ +++S Sbjct: 106 SPVFDKIYTDAYLPYSENRIELQEAVEKGVIPLKTFMLRQTRQADLALFVKISNSD---- 161 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 ++ + + R+L+P+++ SEL+ +F+IGF++ +PFLIIDM+VA+I+M+MGMMML P+ I Sbjct: 162 ELQSAEEVPMRLLVPAYVTSELKTAFQIGFVVFIPFLIIDMVVASILMSMGMMMLSPSII 221 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL DGW+LL+ +L +SF Sbjct: 222 SLPFKIMLFVLADGWNLLIGSLAQSF 247 >gi|71906402|ref|YP_283989.1| flagellar biosynthesis protein FliP [Dechloromonas aromatica RCB] gi|71846023|gb|AAZ45519.1| Flagellar transport protein FliP [Dechloromonas aromatica RCB] Length = 248 Score = 168 bits (425), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 96/229 (41%), Positives = 149/229 (65%), Gaps = 6/229 (2%) Query: 19 AKSSLHDVMNIPADLSISTW--IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 A L V + PA +T+ ++T + T L+ P +++M+T F R +IV S+LR + Sbjct: 22 AAGGLPAVTSTPAAGGGTTYSLTIQTLLLMTALTFIPAIVLMMTGFTRIVIVLSLLRHAL 81 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G + PPN V++ L+LF+TF+VMSP L++ PL N+I A +R A P FM Sbjct: 82 GTQTAPPNQVVVGLSLFLTFFVMSPVLEKVYTDAYVPLSENKINIMQAGERAAIPMRSFM 141 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 TRE DL+LF +A + I + RIL+P+F+ISEL+ +F+IGF++ +PFL Sbjct: 142 LKQTRESDLALFAGIA----KIDKIETPEDTPLRILVPAFVISELKTAFQIGFILFIPFL 197 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +IDM+VA+++M+MGMMM+ P ++LPFK++ FVL+DGW L++ +LV+SF Sbjct: 198 VIDMVVASLLMSMGMMMMSPVMVALPFKLMLFVLVDGWHLVIGSLVQSF 246 >gi|212634377|ref|YP_002310902.1| flagellar biosynthesis protein FliP [Shewanella piezotolerans WP3] gi|212555861|gb|ACJ28315.1| Flagellar biosynthetic protein FliP [Shewanella piezotolerans WP3] Length = 249 Score = 167 bits (424), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 93/247 (37%), Positives = 149/247 (60%), Gaps = 8/247 (3%) Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIF---TILSIAPILLIM 58 + + AL L++P V A++ + + + ST T I T LS P +IM Sbjct: 6 VLFGGLALSLISPT-VLAETGILPAVTVSTGADGSTQYSVTMQILLLMTALSFIPAAVIM 64 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R I+V SILR +G+ P N ++I +++FMTF++MSP D+ E ++P + Sbjct: 65 LTSFTRIIVVLSILRQAIGLQQAPSNQILIGISMFMTFFIMSPVFDKIYEQAVKPYIEQG 124 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 + A P FM + TR DL F+++ S ++N I + + ++IP+F+ Sbjct: 125 MPIQDAFNTGKGPLKDFMLSQTRLTDLDTFIEI--SGYQN--INEPEDAPMSVIIPAFIT 180 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK++ FVL+DGWSL++ Sbjct: 181 SELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVM 240 Query: 239 ENLVKSF 245 L SF Sbjct: 241 GTLANSF 247 >gi|77359751|ref|YP_339326.1| flagellar biosynthesis protein FliP [Pseudoalteromonas haloplanktis TAC125] gi|76874662|emb|CAI85883.1| flagellar biosynthesis [Pseudoalteromonas haloplanktis TAC125] Length = 246 Score = 167 bits (424), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 83/206 (40%), Positives = 131/206 (63%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ I T LS P +IM+T F R I+V +ILR +G+ P N V++ ++LF++ ++M Sbjct: 41 LQVLAIMTALSFIPAAIIMMTSFTRIIVVLAILRQAIGLQQTPSNQVLLGMSLFLSIFIM 100 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +P + E I+P ++ Q+T A++ EP FM + R KDL F +A ++ Sbjct: 101 APIYQQVNERAIEPYLSEQVTSMEALELAKEPMKAFMLSQVRIKDLETFAKIAGYDQLDS 160 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + +LIP+F+ SEL+ +F IGF+ +PFLI+D++VA+++MAMGMMML P + Sbjct: 161 P----EATPLIVLIPAFVTSELQTAFIIGFMFFIPFLIVDLVVASVLMAMGMMMLSPMIV 216 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGWSL++ L KSF Sbjct: 217 SLPFKIMLFVLVDGWSLVMGTLAKSF 242 >gi|256833225|ref|YP_003161952.1| flagellar biosynthetic protein FliP [Jonesia denitrificans DSM 20603] gi|256686756|gb|ACV09649.1| flagellar biosynthetic protein FliP [Jonesia denitrificans DSM 20603] Length = 276 Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 86/210 (40%), Positives = 137/210 (65%), Gaps = 5/210 (2%) Query: 36 STWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMT 95 ++ IV GI T+LS+AP LL+++T F + ++V SI R +G+ SVPPN V+ +ALF++ Sbjct: 71 TSSIVVLLGI-TLLSVAPSLLLLMTSFTKILVVLSITRNALGLQSVPPNQVLAGIALFLS 129 Query: 96 FYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSS 155 ++M P L ++ +QP + + A+ + + P FM +TRE D++L A + Sbjct: 130 IFIMGPVLTSINDIAVQPFLAGDLDFAGALDQGSGPLRDFMLAHTRESDIALITRAAEAE 189 Query: 156 HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215 + + LIP+F++SELR +F IGF+I LPFL+ID++++ +M++GMMMLP Sbjct: 190 NP----ADPQSVPLMTLIPAFLLSELRAAFIIGFVIFLPFLVIDLVISASLMSLGMMMLP 245 Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 P ISLPFK++ FVL+DGWSL+V L+ S+ Sbjct: 246 PIIISLPFKLLLFVLVDGWSLIVTALIGSY 275 >gi|294084391|ref|YP_003551149.1| flagellar biosynthetic protein FliP [Candidatus Puniceispirillum marinum IMCC1322] gi|292663964|gb|ADE39065.1| flagellar biosynthetic protein FliP [Candidatus Puniceispirillum marinum IMCC1322] Length = 261 Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 85/208 (40%), Positives = 135/208 (64%), Gaps = 8/208 (3%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + T L++ P L++ +T F R IIV SILR MG PPN V++++ALF+TF++M Sbjct: 57 LQILALMTALTVLPSLVLGMTSFTRIIIVLSILRQAMGTQQTPPNQVLVAIALFLTFFIM 116 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +PT + +M + P M + TA+ F+ NTR DL +F +MA Sbjct: 117 APTFTQLNDMALSPYMEGTMPMETALSDGTNIMKDFLVQNTRVTDLVMFTEMAG------ 170 Query: 160 DITKND--HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 D T D + +L+P+F+ SEL+ +F+IGFL+ LPFL+IDM++A+I+M++GMMML P Sbjct: 171 DTTYEDPKDVPLTVLLPAFITSELKTAFQIGFLLFLPFLVIDMVIASILMSLGMMMLSPM 230 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++LPFK++ FVL+DGW++ V +LV ++ Sbjct: 231 LVALPFKLLLFVLVDGWAMTVGSLVATY 258 >gi|89069801|ref|ZP_01157136.1| flagellar biosynthetic protein FliP [Oceanicola granulosus HTCC2516] gi|89044602|gb|EAR50718.1| flagellar biosynthetic protein FliP [Oceanicola granulosus HTCC2516] Length = 246 Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 86/219 (39%), Positives = 136/219 (62%), Gaps = 4/219 (1%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 +++ D S++T ++ + T+LS+ P L IM+TCFP + V +ILR +G+ PPN++ Sbjct: 31 LSLGEDGSLATRSIQLLLLVTLLSLVPGLAIMITCFPFIVTVLAILRQAIGLQQSPPNML 90 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 I++LALF+T++VM P + E G PL + + A PF FM L+ Sbjct: 91 IVTLALFLTYFVMEPVFRAAWEAGGAPLAAGEASLEEAFAGAIAPFRTFMAARVDPSALA 150 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 D+ S+ +L+PSF++SE+ R+F++GFL+ LPFLIID++VA ++ Sbjct: 151 SLADLRGSAPPPAPEAAP----LSVLVPSFLLSEIERAFQVGFLLFLPFLIIDLVVAAVL 206 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+MGMMM+PP +SLPFK+ FFV+ DGW+L+ E LV+ + Sbjct: 207 MSMGMMMVPPAIVSLPFKLAFFVVADGWTLVAEALVRGY 245 >gi|283834476|ref|ZP_06354217.1| flagellar biosynthetic protein FliP [Citrobacter youngae ATCC 29220] gi|291070023|gb|EFE08132.1| flagellar biosynthetic protein FliP [Citrobacter youngae ATCC 29220] Length = 252 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 85/200 (42%), Positives = 129/200 (64%), Gaps = 6/200 (3%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T++ I P L++M+TCF RFIIV S+LR +G+ PPN ++I +AL +T VM P Sbjct: 52 LMTLVGILPTLVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWI 111 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + + P N+QIT A+ A P FM T +K ++ M +A++ D Sbjct: 112 NIYDHAVVPFENDQITLPDALSTAASPLKRFMLAQTNKKAIAQIMTIANAKGNAADQ--- 168 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P +SLPFK Sbjct: 169 ---DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFK 225 Query: 225 VIFFVLIDGWSLLVENLVKS 244 ++ FVLIDGW+L V L S Sbjct: 226 LMLFVLIDGWALTVGTLTSS 245 >gi|317406210|gb|EFV86458.1| flagellar biosynthetic protein FliP [Achromobacter xylosoxidans C54] Length = 168 Score = 167 bits (422), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 79/170 (46%), Positives = 115/170 (67%), Gaps = 4/170 (2%) Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVF 135 MG PPN V+I LALF+TFY MSP D+ +PL I A++R A P F Sbjct: 1 MGTAMSPPNHVLIGLALFLTFYTMSPVFDKIYTDAYKPLSEGSIQFEAAVERAAGPLRTF 60 Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195 M + TRE DL+LF ++A + + + RIL+P+F+ SEL+ +F+IGF I +PF Sbjct: 61 MLHQTRENDLALFANLA----KQPALEDPSQVPLRILVPAFITSELKTAFQIGFTIFIPF 116 Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LIID++VA+++MA+GMMM+PP +++LPFK++ FVL DGW+LL+ +L +SF Sbjct: 117 LIIDLVVASVLMALGMMMVPPVTVALPFKLMLFVLADGWNLLMGSLAQSF 166 >gi|313905144|ref|ZP_07838513.1| flagellar biosynthetic protein FliP [Eubacterium cellulosolvens 6] gi|313470047|gb|EFR65380.1| flagellar biosynthetic protein FliP [Eubacterium cellulosolvens 6] Length = 224 Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 81/200 (40%), Positives = 128/200 (64%), Gaps = 4/200 (2%) Query: 46 FTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDR 105 T++++ P ++IM+T F R II+ S R +G+ PPN+V++ ++LF+T ++M+PT+ + Sbjct: 28 LTLVALLPSIVIMMTSFVRTIIILSFTRNALGVQQSPPNMVLVGISLFLTLFIMTPTITQ 87 Query: 106 SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165 E QP +IT+ AI+R+ P FM NT K L+ F+ MA + + Sbjct: 88 INEEAYQPYQRGEITQEQAIERMQVPMKEFMLKNTETKTLNKFVKMAKTKK----LKNPK 143 Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225 I+ P+FM SEL+R F GFLI LPFL++D++VAT +M+MGM M+PPT +S+PFK+ Sbjct: 144 DYPLTIVTPAFMTSELKRGFMAGFLIYLPFLLLDVVVATTLMSMGMAMMPPTMVSMPFKL 203 Query: 226 IFFVLIDGWSLLVENLVKSF 245 + FV ++GW LL ++ SF Sbjct: 204 LLFVSVNGWELLFSTIISSF 223 >gi|254499102|ref|ZP_05111792.1| flagellar biosynthesis protein FliP [Legionella drancourtii LLAP12] gi|254351641|gb|EET10486.1| flagellar biosynthesis protein FliP [Legionella drancourtii LLAP12] Length = 241 Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 87/206 (42%), Positives = 137/206 (66%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ F + T+LS+AP +LIM++ F R ++V S+LR +G+ PPN VIISL+LF+T + M Sbjct: 39 LQAFAVLTVLSLAPSILIMLSSFTRIVVVLSMLRNALGLQQTPPNTVIISLSLFLTLFTM 98 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P P +Q+ T++ +P FM TREKD+++ + +A ++ Sbjct: 99 MPVAKTIYNEAYLPYEAHQMNTETSLNNAIKPLKKFMLQQTREKDMNVILQLAKEPMPSS 158 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + I++ LIP+F++SEL+ +F+IGF+I LPFL++D+IV+ I+M +GMMM+PP SI Sbjct: 159 A----EKIKFYQLIPAFLLSELQTAFQIGFMIFLPFLLVDLIVSGILMTVGMMMMPPMSI 214 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLP K++ F+LIDGW L+V+ LV SF Sbjct: 215 SLPVKILLFILIDGWDLVVQALVGSF 240 >gi|298346006|ref|YP_003718693.1| flagellar biosynthesis protein FliP [Mobiluncus curtisii ATCC 43063] gi|298236067|gb|ADI67199.1| flagellar biosynthesis protein FliP [Mobiluncus curtisii ATCC 43063] Length = 422 Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 86/214 (40%), Positives = 139/214 (64%), Gaps = 5/214 (2%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D + ST ++ F + T+LSIAP LL+M+T F + IV ++ R MG+ +PPN VI LA Sbjct: 213 DKAPSTAVL-VFLLITVLSIAPSLLLMMTSFTKIFIVLAMARNAMGLNQIPPNQVISGLA 271 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 +F++ ++MSPT+ + +QP M+ +I + +P FM TRE+D++L M Sbjct: 272 IFLSLFIMSPTITSIWQDAVQPYMDGKIQVQDMFKLAEKPVREFMGPLTREEDIAL---M 328 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 ++ R + + + L+P+FMISE+R +F IGF++ +PFL+ID++V +M+MGM Sbjct: 329 TRAADR-PNPPSLEETPFTTLVPAFMISEVRSAFIIGFVVFIPFLVIDLVVGAALMSMGM 387 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMLPP +S+PFKV+ FV++DGW LL + L+ ++ Sbjct: 388 MMLPPVMVSMPFKVLLFVMVDGWGLLTKTLIGTY 421 >gi|168704086|ref|ZP_02736363.1| flagellar biosynthetic protein FliP [Gemmata obscuriglobus UQM 2246] Length = 224 Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 86/227 (37%), Positives = 139/227 (61%), Gaps = 7/227 (3%) Query: 21 SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 L D +N P L+ V+T + + ++ P L+ +TCF R +IV S +R G+G Sbjct: 2 GDLADFVNGPNGLNFQNLSPPVQTALMLGLSALLPAALMTMTCFTRVVIVLSFVRQGLGA 61 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 +VPPNLV+ LALF+T +VM PT + QP + QIT A + + + FM Sbjct: 62 QNVPPNLVLTGLALFITLFVMQPTFAEIDQKAYQPYLQKQITGPQAFKTGTDIYKQFMLR 121 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 TR++DL+LF+ + S H + K + + ++P+F+ISEL+ +F +GF I LPFL++ Sbjct: 122 QTRKQDLALFLHL--SKHT---VEKAEDAPFLTVVPAFLISELKTAFIMGFCIYLPFLMV 176 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 D++V++++ +MGM+M+PP +IS PFK++ FVL DGW L+ + S+ Sbjct: 177 DLVVSSVLTSMGMVMMPPVTISAPFKILLFVLADGWHLVTYAIALSY 223 >gi|167623389|ref|YP_001673683.1| flagellar biosynthesis protein FliP [Shewanella halifaxensis HAW-EB4] gi|167353411|gb|ABZ76024.1| flagellar biosynthetic protein FliP [Shewanella halifaxensis HAW-EB4] Length = 249 Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 84/201 (41%), Positives = 131/201 (65%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T LS P ++IM+T F R I+V SILR +G+ P N V+I +++FMTF++MSP D Sbjct: 51 LMTALSFIPAMVIMLTSFTRIIVVLSILRQAIGLQQTPSNQVLIGISMFMTFFIMSPVFD 110 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + +QP + + A P FM TR DL+ F+++ S ++N I + Sbjct: 111 KIYVQAVQPYIEQGMPLQDAFTTGQGPLKDFMLAQTRNSDLNTFIEI--SGYQN--INEP 166 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + ++IP+F+ SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK Sbjct: 167 EDAPMTVIIPAFITSELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFK 226 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGWSL++ L SF Sbjct: 227 IMLFVLVDGWSLVMGTLANSF 247 >gi|315654594|ref|ZP_07907500.1| flagellar biosynthetic protein FliP [Mobiluncus curtisii ATCC 51333] gi|315491058|gb|EFU80677.1| flagellar biosynthetic protein FliP [Mobiluncus curtisii ATCC 51333] Length = 422 Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 86/214 (40%), Positives = 139/214 (64%), Gaps = 5/214 (2%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D + ST ++ F + T+LSIAP LL+M+T F + IV ++ R MG+ +PPN VI LA Sbjct: 213 DKAPSTAVL-VFLLITVLSIAPSLLLMMTSFTKIFIVLAMARNAMGLNQIPPNQVISGLA 271 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 +F++ ++MSPT+ + +QP M+ +I + +P FM TRE+D++L M Sbjct: 272 IFLSLFIMSPTITSIWQDAVQPYMDGKIQVQDMFKLAEKPVREFMGPLTREEDIAL---M 328 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 ++ R + + + L+P+FMISE+R +F IGF++ +PFL+ID++V +M+MGM Sbjct: 329 TRAADR-PNPPSLEETPFTTLVPAFMISEVRSAFIIGFVVFIPFLVIDLVVGAALMSMGM 387 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMLPP +S+PFKV+ FV++DGW LL + L+ ++ Sbjct: 388 MMLPPVMVSMPFKVLLFVMVDGWGLLTKTLIGTY 421 >gi|315657501|ref|ZP_07910383.1| flagellar biosynthetic protein FliP [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315491973|gb|EFU81582.1| flagellar biosynthetic protein FliP [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 422 Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 86/214 (40%), Positives = 139/214 (64%), Gaps = 5/214 (2%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D + ST ++ F + T+LSIAP LL+M+T F + IV ++ R MG+ +PPN VI LA Sbjct: 213 DKAPSTAVL-VFLLITVLSIAPSLLLMMTSFTKIFIVLAMARNAMGLNQIPPNQVISGLA 271 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 +F++ ++MSPT+ + +QP M+ +I + +P FM TRE+D++L M Sbjct: 272 IFLSLFIMSPTITSIWQDAVQPYMDGKIQVQDMFKLAEKPVREFMGPLTREEDIAL---M 328 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 ++ R + + + L+P+FMISE+R +F IGF++ +PFL+ID++V +M+MGM Sbjct: 329 TRAADR-PNPPSLEETPFTTLVPAFMISEVRSAFIIGFVVFIPFLVIDLVVGAALMSMGM 387 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMLPP +S+PFKV+ FV++DGW LL + L+ ++ Sbjct: 388 MMLPPVMVSMPFKVLLFVMVDGWGLLTKTLIGTY 421 >gi|117928065|ref|YP_872616.1| flagellar biosynthesis protein FliP [Acidothermus cellulolyticus 11B] gi|117648528|gb|ABK52630.1| flagellar biosynthetic protein FliP [Acidothermus cellulolyticus 11B] Length = 318 Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 86/201 (42%), Positives = 138/201 (68%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T+L++AP LI+ T F + I+V S+ R +G+ ++PPN V++ LALF++ +VMSPTL Sbjct: 121 LMTVLAVAPAALILTTSFTKVIVVLSLTRNALGLQTIPPNQVLVGLALFLSLFVMSPTLS 180 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + +QP + IT + A +P FM N TR+ DL+L +D +SH++ + Sbjct: 181 AMNKDAVQPYLKGHITASQAYDAGVQPLKTFMLNQTRKDDLALMID---ASHQSRPASPK 237 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D + L+P+F++SELR +F IGF+I +PFLIID++V++ +M+MGMMMLPP+ ISLPFK Sbjct: 238 D-VSMTTLVPAFVLSELRAAFIIGFVIFVPFLIIDLVVSSSLMSMGMMMLPPSIISLPFK 296 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ F+++DGW L+ L+ S+ Sbjct: 297 LLLFIMVDGWGLIARTLLSSY 317 >gi|323975949|gb|EGB71043.1| FliP family protein [Escherichia coli TW10509] Length = 250 Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 83/200 (41%), Positives = 128/200 (64%), Gaps = 6/200 (3%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T++ + P +++M+TCF RFIIV S+LR +G+ PPN ++I +AL +T VM P Sbjct: 50 LMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTLLVMRPVWL 109 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + + P N+QIT T A+ A P FM T +K ++ M + + D Sbjct: 110 NIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKGNAADQ--- 166 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P +SLPFK Sbjct: 167 ---DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFK 223 Query: 225 VIFFVLIDGWSLLVENLVKS 244 ++ FVLIDGWSL + L S Sbjct: 224 LMLFVLIDGWSLTIGTLTTS 243 >gi|15645308|ref|NP_207479.1| flagellar biosynthesis protein FliP [Helicobacter pylori 26695] gi|4580427|gb|AAD14890.2| flagellar biosynthetic protein (fliP) [Helicobacter pylori 26695] Length = 153 Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 78/152 (51%), Positives = 114/152 (75%), Gaps = 4/152 (2%) Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 +TF++M P+L ++ + GI+P M+ +I+ T A ++ A PF FM NTREKDL+LF + + Sbjct: 3 LTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRN 62 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 + T D + +LIP+FMISEL+ +F+IGFL+ LPFL+IDM++++I+MAMGMMM Sbjct: 63 LPNPKTP----DEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMM 118 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LPP ISLPFK++ F+L+DG++LL ENLV SF Sbjct: 119 LPPVMISLPFKILVFILVDGFNLLTENLVASF 150 >gi|327254531|gb|EGE66147.1| flagellar biosynthetic protein FliP [Escherichia coli STEC_7v] Length = 250 Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 83/200 (41%), Positives = 128/200 (64%), Gaps = 6/200 (3%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T++ + P +++M+TCF RFIIV S+LR +G+ PPN ++I +AL +T VM P Sbjct: 50 LMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTLLVMRPVWL 109 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + + P N+QIT T A+ A P FM T +K ++ M + + D Sbjct: 110 NIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKGNAADQ--- 166 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P +SLPFK Sbjct: 167 ---DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFK 223 Query: 225 VIFFVLIDGWSLLVENLVKS 244 ++ FVLIDGWSL + L S Sbjct: 224 LMLFVLIDGWSLTIGTLTTS 243 >gi|315127309|ref|YP_004069312.1| flagellar biosynthesis protein FliP [Pseudoalteromonas sp. SM9913] gi|315015823|gb|ADT69161.1| flagellar biosynthesis protein FliP [Pseudoalteromonas sp. SM9913] Length = 246 Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 82/206 (39%), Positives = 131/206 (63%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ I T +S P +IM+T F R I+V +ILR +G+ P N V++ ++LF++ ++M Sbjct: 41 LQVLAIMTAMSFIPAAIIMMTSFTRIIVVLAILRQAIGLQQTPSNQVLLGMSLFLSIFIM 100 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +P ++ E I+P ++ Q+T A+ EP FM + R KDL F +A ++ Sbjct: 101 APIYEQINERAIEPYLSEQVTSLEALDLAKEPMKAFMLSQVRIKDLETFAKIAGYDQLDS 160 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + +LIP+F+ SEL+ +F IGF+ +PFLI+D++VA+++MAMGMMML P + Sbjct: 161 P----EATPMVVLIPAFVTSELQTAFIIGFMFFIPFLIVDLVVASVLMAMGMMMLSPMIV 216 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGWSL++ L KSF Sbjct: 217 SLPFKIMLFVLVDGWSLVMGTLAKSF 242 >gi|319790413|ref|YP_004152046.1| flagellar biosynthetic protein FliP [Thermovibrio ammonificans HB-1] gi|317114915|gb|ADU97405.1| flagellar biosynthetic protein FliP [Thermovibrio ammonificans HB-1] Length = 232 Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 86/199 (43%), Positives = 141/199 (70%), Gaps = 5/199 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T+L++ P LLI +T F R +I+ S+LR +G PPN V+I+L+LF+TF+ M+PT ++ Sbjct: 38 TLLAVVPSLLIALTSFTRIVIILSLLRHALGTPQTPPNQVVIALSLFLTFFTMAPTFEKI 97 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 + ++P +N QIT A++R + P FM +NTR++DL LF+D+ RN + Sbjct: 98 DKEALKPYLNGQITAVEAVERASRPLKEFMLHNTRKEDLKLFLDI-----RNERPKGPEE 152 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 + + L+P+FM+SE++ +FE F+I LPF++ID++VA+I+M+MGMMM+PP +SLPFK+I Sbjct: 153 VSFVTLVPAFMVSEIKTAFEFVFVIFLPFMVIDLLVASILMSMGMMMIPPMMLSLPFKLI 212 Query: 227 FFVLIDGWSLLVENLVKSF 245 FV+ GW LL+++++ S+ Sbjct: 213 LFVVSGGWELLIKSIIVSY 231 >gi|300817291|ref|ZP_07097509.1| flagellar biosynthetic protein FliP [Escherichia coli MS 107-1] gi|300530267|gb|EFK51329.1| flagellar biosynthetic protein FliP [Escherichia coli MS 107-1] Length = 276 Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 83/200 (41%), Positives = 128/200 (64%), Gaps = 6/200 (3%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T++ + P +++M+TCF RFIIV S+LR +G+ PPN ++I +AL +T VM P Sbjct: 50 LMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWL 109 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + + P N+QIT T A+ A P FM T +K ++ M + + D Sbjct: 110 NIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKGHAADQ--- 166 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P +SLPFK Sbjct: 167 ---DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFK 223 Query: 225 VIFFVLIDGWSLLVENLVKS 244 ++ FVLIDGWSL + L S Sbjct: 224 LMLFVLIDGWSLTIGTLTTS 243 >gi|91792694|ref|YP_562345.1| flagellar biosynthesis protein FliP [Shewanella denitrificans OS217] gi|91714696|gb|ABE54622.1| flagellar biosynthetic protein FliP [Shewanella denitrificans OS217] Length = 247 Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 83/199 (41%), Positives = 131/199 (65%), Gaps = 4/199 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T +S P ++IM+T F R I+V SILR +G+ P N V+I ++LFMTF++MSP D+ Sbjct: 51 TAMSFIPAMVIMLTSFTRIIVVLSILRQALGLQQTPSNQVLIGISLFMTFFIMSPVFDKI 110 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 ++P +N +T + + P FM + R DL F+++ S ++ IT + Sbjct: 111 YTEAVEPYINETMTLQQSYEVGKLPIKSFMLSQLRLTDLQTFVEI--SGYKG--ITSPEE 166 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 ++IP+F+ SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK++ Sbjct: 167 APMSVIIPAFITSELKTAFQIGFMLFIPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIM 226 Query: 227 FFVLIDGWSLLVENLVKSF 245 FVL+DGWSL++ L SF Sbjct: 227 LFVLVDGWSLVMGTLANSF 245 >gi|304390236|ref|ZP_07372190.1| flagellar biosynthesis protein FliP [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326718|gb|EFL93962.1| flagellar biosynthesis protein FliP [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 422 Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 86/214 (40%), Positives = 139/214 (64%), Gaps = 5/214 (2%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D + ST ++ F + T+LSIAP LL+M+T F + IV ++ R MG+ +PPN VI LA Sbjct: 213 DKAPSTAVL-VFLLITVLSIAPSLLLMMTSFTKIFIVLAMARNAMGLNQLPPNQVISGLA 271 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 +F++ ++MSPT+ + +QP M+ +I + +P FM TRE+D++L M Sbjct: 272 IFLSLFIMSPTITSIWQDAVQPYMDGKIQVQDMFKLAEKPVREFMGPLTREEDIAL---M 328 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 ++ R + + + L+P+FMISE+R +F IGF++ +PFL+ID++V +M+MGM Sbjct: 329 TRAADR-PNPPSLEETPFTTLVPAFMISEVRSAFIIGFVVFIPFLVIDLVVGAALMSMGM 387 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMLPP +S+PFKV+ FV++DGW LL + L+ ++ Sbjct: 388 MMLPPVMVSMPFKVLLFVMVDGWGLLTKTLIGTY 421 >gi|323191516|gb|EFZ76777.1| flagellar biosynthetic protein FliP [Escherichia coli RN587/1] Length = 250 Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 83/200 (41%), Positives = 128/200 (64%), Gaps = 6/200 (3%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T++ + P +++M+TCF RFIIV S+LR +G+ PPN ++I +AL +T VM P Sbjct: 50 LMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTLLVMRPIWL 109 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + + P N+QIT T A+ A P FM T +K ++ M + + D Sbjct: 110 NIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKGNAADQ--- 166 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P +SLPFK Sbjct: 167 ---DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFK 223 Query: 225 VIFFVLIDGWSLLVENLVKS 244 ++ FVLIDGWSL + L S Sbjct: 224 LMLFVLIDGWSLTIGTLTTS 243 >gi|306813325|ref|ZP_07447518.1| flagellar biosynthesis protein FliP [Escherichia coli NC101] gi|305854088|gb|EFM54527.1| flagellar biosynthesis protein FliP [Escherichia coli NC101] Length = 250 Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 83/200 (41%), Positives = 128/200 (64%), Gaps = 6/200 (3%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T++ + P +++M+TCF RFIIV S+LR +G+ PPN ++I +AL +T VM P Sbjct: 50 LMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTLLVMRPIWL 109 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + + P N+QIT T A+ A P FM T +K ++ M + + D Sbjct: 110 NIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKGNAADQ--- 166 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P +SLPFK Sbjct: 167 ---DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFK 223 Query: 225 VIFFVLIDGWSLLVENLVKS 244 ++ FVLIDGWSL + L S Sbjct: 224 LMLFVLIDGWSLTIGTLTTS 243 >gi|218703506|ref|YP_002411025.1| flagellar biosynthesis protein FliP [Escherichia coli UMN026] gi|293403337|ref|ZP_06647428.1| fliP [Escherichia coli FVEC1412] gi|298378948|ref|ZP_06988829.1| fliP [Escherichia coli FVEC1302] gi|300898060|ref|ZP_07116429.1| flagellar biosynthetic protein FliP [Escherichia coli MS 198-1] gi|59889762|emb|CAH19117.1| Lateral flagellar export/assembly protein (FliP-like) [Escherichia coli] gi|218430603|emb|CAR11469.1| Lateral flagellar export/assembly protein, FliP-like [Escherichia coli UMN026] gi|284920026|emb|CBG33082.1| lateral flagellar export/assembly protein (FliP-like) [Escherichia coli 042] gi|291429190|gb|EFF02210.1| fliP [Escherichia coli FVEC1412] gi|298280061|gb|EFI21565.1| fliP [Escherichia coli FVEC1302] gi|300358238|gb|EFJ74108.1| flagellar biosynthetic protein FliP [Escherichia coli MS 198-1] Length = 250 Score = 165 bits (418), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 83/200 (41%), Positives = 128/200 (64%), Gaps = 6/200 (3%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T++ + P +++M+TCF RFIIV S+LR +G+ PPN ++I +AL +T VM P Sbjct: 50 LMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPVWL 109 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + + P N+QIT T A+ A P FM T +K ++ M + + D Sbjct: 110 NIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKGNAADQ--- 166 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P +SLPFK Sbjct: 167 ---DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFK 223 Query: 225 VIFFVLIDGWSLLVENLVKS 244 ++ FVLIDGWSL + L S Sbjct: 224 LMLFVLIDGWSLTIGTLTTS 243 >gi|51894127|ref|YP_076818.1| flagellar biosynthesis protein FliP [Symbiobacterium thermophilum IAM 14863] gi|51857816|dbj|BAD41974.1| flagellar biosynthesis protein [Symbiobacterium thermophilum IAM 14863] Length = 253 Score = 165 bits (418), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 88/194 (45%), Positives = 130/194 (67%), Gaps = 4/194 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP ++I+ T F R I+VF +RT +G+ PPN V+I LALF+T VM PT + + Sbjct: 62 APAIIILCTSFTRIIVVFGFIRTALGLQQTPPNQVLIGLALFLTAAVMMPTFSEINQTAV 121 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 QP + +I + AI+R A P FM TRE DL L ++++ + + + Sbjct: 122 QPYLAGEIDQVEAIERGALPLKAFMLRQTREADLGLMLEVSGQPAPE----GPEDVSFLT 177 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 ++P+F +SEL+ +F +GFLI LPF+IID+I A+++M++GMMM+PPT ISLPFKV+ FVL+ Sbjct: 178 VVPAFALSELKTAFTMGFLIYLPFIIIDLITASLMMSLGMMMVPPTLISLPFKVLLFVLV 237 Query: 232 DGWSLLVENLVKSF 245 DGW L+VE+LV+SF Sbjct: 238 DGWHLVVESLVRSF 251 >gi|256020209|ref|ZP_05434074.1| flagellar biosynthesis protein FliP [Shigella sp. D9] gi|260853448|ref|YP_003227339.1| putative lateral flagellar biosynthesis protein [Escherichia coli O26:H11 str. 11368] gi|260866394|ref|YP_003232796.1| putative lateral flagellar biosynthesis protein [Escherichia coli O111:H- str. 11128] gi|307315216|ref|ZP_07594795.1| flagellar biosynthetic protein FliP [Escherichia coli W] gi|332281371|ref|ZP_08393784.1| lateral flagellar export/assembly protein [Shigella sp. D9] gi|257752097|dbj|BAI23599.1| predicted lateral flagellar biosynthesis protein [Escherichia coli O26:H11 str. 11368] gi|257762750|dbj|BAI34245.1| predicted lateral flagellar biosynthesis protein [Escherichia coli O111:H- str. 11128] gi|306905397|gb|EFN35934.1| flagellar biosynthetic protein FliP [Escherichia coli W] gi|315059469|gb|ADT73796.1| Lateral flagellar export/assembly protein [Escherichia coli W] gi|323158013|gb|EFZ44114.1| flagellar biosynthetic protein FliP [Escherichia coli EPECa14] gi|323178514|gb|EFZ64092.1| flagellar biosynthetic protein FliP [Escherichia coli 1180] gi|323181527|gb|EFZ66947.1| flagellar biosynthetic protein FliP [Escherichia coli 1357] gi|323379973|gb|ADX52241.1| flagellar biosynthetic protein FliP [Escherichia coli KO11] gi|332103723|gb|EGJ07069.1| lateral flagellar export/assembly protein [Shigella sp. D9] Length = 250 Score = 165 bits (418), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 83/200 (41%), Positives = 128/200 (64%), Gaps = 6/200 (3%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T++ + P +++M+TCF RFIIV S+LR +G+ PPN ++I +AL +T VM P Sbjct: 50 LMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWL 109 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + + P N+QIT T A+ A P FM T +K ++ M + + D Sbjct: 110 NIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKGHAADQ--- 166 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P +SLPFK Sbjct: 167 ---DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFK 223 Query: 225 VIFFVLIDGWSLLVENLVKS 244 ++ FVLIDGWSL + L S Sbjct: 224 LMLFVLIDGWSLTIGTLTTS 243 >gi|170684182|ref|YP_001742352.1| flagellar biosynthesis protein FliP [Escherichia coli SMS-3-5] gi|170521900|gb|ACB20078.1| lateral flagellar export/assembly protein LfiP [Escherichia coli SMS-3-5] Length = 250 Score = 165 bits (418), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 83/200 (41%), Positives = 128/200 (64%), Gaps = 6/200 (3%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T++ + P +++M+TCF RFIIV S+LR +G+ PPN ++I +AL +T VM P Sbjct: 50 LMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPVWL 109 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + + P N+QIT T A+ A P FM T +K ++ M + + D Sbjct: 110 NIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKGNAADQ--- 166 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P +SLPFK Sbjct: 167 ---DLTIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFK 223 Query: 225 VIFFVLIDGWSLLVENLVKS 244 ++ FVLIDGWSL + L S Sbjct: 224 LMLFVLIDGWSLTIGTLTTS 243 >gi|293408348|ref|ZP_06652187.1| fliP [Escherichia coli B354] gi|291471526|gb|EFF14009.1| fliP [Escherichia coli B354] Length = 250 Score = 165 bits (417), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 83/200 (41%), Positives = 128/200 (64%), Gaps = 6/200 (3%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T++ + P +++M+TCF RFIIV S+LR +G+ PPN ++I +AL +T VM P Sbjct: 50 LMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWL 109 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + + P N+QIT T A+ A P FM T +K ++ M + + D Sbjct: 110 NIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKGNAADQ--- 166 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P +SLPFK Sbjct: 167 ---DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFK 223 Query: 225 VIFFVLIDGWSLLVENLVKS 244 ++ FVLIDGWSL + L S Sbjct: 224 LMLFVLIDGWSLTIGTLTTS 243 >gi|331671782|ref|ZP_08372578.1| flagellar biosynthetic protein FliP [Escherichia coli TA280] gi|331070771|gb|EGI42130.1| flagellar biosynthetic protein FliP [Escherichia coli TA280] Length = 250 Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 83/200 (41%), Positives = 128/200 (64%), Gaps = 6/200 (3%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T++ + P +++M+TCF RFIIV S+LR +G+ PPN ++I +AL +T VM P Sbjct: 50 LMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWL 109 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + + P N+QIT T A+ A P FM T +K ++ M + + D Sbjct: 110 NIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKGNAADQ--- 166 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P +SLPFK Sbjct: 167 ---DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFK 223 Query: 225 VIFFVLIDGWSLLVENLVKS 244 ++ FVLIDGWSL + L S Sbjct: 224 LMLFVLIDGWSLTIGTLTTS 243 >gi|256370973|ref|YP_003108797.1| flagellar biosynthetic protein FliP [Acidimicrobium ferrooxidans DSM 10331] gi|256007557|gb|ACU53124.1| flagellar biosynthetic protein FliP [Acidimicrobium ferrooxidans DSM 10331] Length = 229 Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 78/200 (39%), Positives = 130/200 (65%), Gaps = 5/200 (2%) Query: 46 FTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDR 105 T+LS+AP LL++ T F ++V SI R +G+ + PPN V+ LALF++ +VM+PTL Sbjct: 34 LTVLSLAPTLLVLFTGFVEIVVVLSITRNALGLSTTPPNQVLAGLALFLSLFVMAPTLGI 93 Query: 106 SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165 + P ++ I+ A+ R P ++M +TR ++L+LF + H + D Sbjct: 94 VEHQAVLPYLHGHISAVVALDRAEGPIKLWMLRHTRTQELALFDVVTHHAGVAPAAAPLD 153 Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225 + +P+F++SEL +F +GF+I +PFL+ID++V++++M++GMMMLPPT +SLPFK+ Sbjct: 154 AV-----VPAFILSELHSAFVMGFIIYVPFLVIDLVVSSVLMSLGMMMLPPTLVSLPFKL 208 Query: 226 IFFVLIDGWSLLVENLVKSF 245 + FVL+DGW+L+ L+ S Sbjct: 209 LLFVLVDGWTLVAHALLVSL 228 >gi|296282256|ref|ZP_06860254.1| flagellar biosynthesis protein FliP [Citromicrobium bathyomarinum JL354] Length = 258 Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 91/241 (37%), Positives = 146/241 (60%), Gaps = 22/241 (9%) Query: 24 HDVMNIPADLSISTWIVRTFG------------------IFTILSIAPILLIMVTCFPRF 65 H +P D + + + R FG + +L+ P +L+M+T F R Sbjct: 22 HAATAVPTDSAAAGALDRAFGELGGAGGEPLSLSLQLLLVMGLLTFLPAILLMMTSFTRI 81 Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 I+V +ILR +G+ PPN V+I ++LF++ ++M+PTLDR I+P QI AI Sbjct: 82 IVVLAILRQALGLQQSPPNQVLIGISLFLSLFIMAPTLDRVNTAAIEPYSAGQINAEVAI 141 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185 +R F FM TRE DL +F D+A++ + + IL+P+F+ SEL+ +F Sbjct: 142 ERAGGEFHKFMIRQTRENDLQMFADIANAPK----FASPQDVPFSILLPAFVTSELKTAF 197 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +IGF++ LPFL+ID++V++++M++GMMM+ P +SLPFK++ FVL+DGWSLL+ +L SF Sbjct: 198 QIGFMLFLPFLVIDLVVSSVLMSLGMMMMSPMLVSLPFKLLLFVLVDGWSLLMGSLASSF 257 Query: 246 I 246 + Sbjct: 258 V 258 >gi|283784010|ref|YP_003363875.1| lateral flagellar export/assembly protein [Citrobacter rodentium ICC168] gi|282947464|emb|CBG87011.1| lateral flagellar export/assembly protein [Citrobacter rodentium ICC168] Length = 252 Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 84/200 (42%), Positives = 128/200 (64%), Gaps = 6/200 (3%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T++ + P L++M+TCF RFIIV S+LR +G+ PPN ++I +AL +T VM P Sbjct: 52 LMTLVGLLPTLVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALCLTMLVMRPIWL 111 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + + P N+Q+T + A+ A P FM T +K ++ M +A D Sbjct: 112 NIYDRAVVPFENDQMTLSDALSTAATPLKRFMLAQTNKKAMAQIMTIADVKGDAADQ--- 168 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P +SLPFK Sbjct: 169 ---DLTIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFK 225 Query: 225 VIFFVLIDGWSLLVENLVKS 244 ++ FVLIDGWSL V L S Sbjct: 226 LMLFVLIDGWSLTVGTLTSS 245 >gi|301646791|ref|ZP_07246645.1| flagellar biosynthetic protein FliP [Escherichia coli MS 146-1] gi|307136838|ref|ZP_07496194.1| flagellar biosynthesis protein FliP [Escherichia coli H736] gi|331640694|ref|ZP_08341841.1| flagellar biosynthetic protein FliP [Escherichia coli H736] gi|301075026|gb|EFK89832.1| flagellar biosynthetic protein FliP [Escherichia coli MS 146-1] gi|315616847|gb|EFU97464.1| flagellar biosynthetic protein FliP [Escherichia coli 3431] gi|331040068|gb|EGI12276.1| flagellar biosynthetic protein FliP [Escherichia coli H736] Length = 250 Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 83/200 (41%), Positives = 127/200 (63%), Gaps = 6/200 (3%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T++ + P + +M+TCF RFIIV S+LR +G+ PPN ++I +AL +T VM P Sbjct: 50 LMTLVGLLPTMALMMTCFARFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWL 109 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + + P N+QIT T A+ A P FM T +K ++ M + + D Sbjct: 110 NIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKGNAADQ--- 166 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P +SLPFK Sbjct: 167 ---DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFK 223 Query: 225 VIFFVLIDGWSLLVENLVKS 244 ++ FVLIDGWSL + L S Sbjct: 224 LMLFVLIDGWSLTIGTLTTS 243 >gi|284989540|ref|YP_003408094.1| flagellar biosynthetic protein FliP [Geodermatophilus obscurus DSM 43160] gi|284062785|gb|ADB73723.1| flagellar biosynthetic protein FliP [Geodermatophilus obscurus DSM 43160] Length = 277 Score = 165 bits (417), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 79/199 (39%), Positives = 126/199 (63%), Gaps = 4/199 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T+LS+AP +L++ T F + I+V S+ R +GM PPN V+ +ALF+T +VM P Sbjct: 82 TVLSVAPAVLLLATSFTKIIVVLSLTRNALGMQMSPPNTVLTGIALFLTLFVMGPVFSEM 141 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 E +QP +N +T T A P F+ +NTRE +LSL + ++ T Sbjct: 142 NETAVQPYLNGAMTMTQAYDVGVVPLREFLLDNTREDELSLMVGLSGEEAP----TDAAA 197 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 + L+P+F++SEL+ +F IG ++ +PFL++DM+V+ +M+MGMMM+PP +SLPFK++ Sbjct: 198 VSMTTLVPAFVLSELKSAFIIGLVVFIPFLVLDMLVSAALMSMGMMMVPPVIVSLPFKLL 257 Query: 227 FFVLIDGWSLLVENLVKSF 245 FV++DGW+L+ LV S+ Sbjct: 258 LFVVVDGWALITTALVGSY 276 >gi|238762376|ref|ZP_04623347.1| Lateral flagellar export/assembly protein (FliP-like) [Yersinia kristensenii ATCC 33638] gi|238699361|gb|EEP92107.1| Lateral flagellar export/assembly protein (FliP-like) [Yersinia kristensenii ATCC 33638] Length = 248 Score = 164 bits (416), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 85/194 (43%), Positives = 124/194 (63%), Gaps = 10/194 (5%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 PI+++M+TCF RFIIV +ILR +G+ PPN V+ +AL +T VM P + + + Sbjct: 59 PIMMLMMTCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKVHQDAVI 118 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH--RNTDITKNDHIEYR 170 P N++IT A+ R P +M T K L MD+A S + D+T Sbjct: 119 PFQNDEITLPQALARAEIPLKNYMLAQTSNKSLDQMMDIAQVSGEPQQQDLT-------- 170 Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230 I+ P++++SEL+ +F+IGF+I +PFL+ID+IVA+I+MAMGMMML P +SLPFK++ FVL Sbjct: 171 IVTPAYLLSELKTAFQIGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVL 230 Query: 231 IDGWSLLVENLVKS 244 DGW+L+V L S Sbjct: 231 CDGWTLIVGTLTAS 244 >gi|188496180|ref|ZP_03003450.1| flagellar biosynthetic protein FliP [Escherichia coli 53638] gi|188491379|gb|EDU66482.1| flagellar biosynthetic protein FliP [Escherichia coli 53638] Length = 250 Score = 164 bits (416), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 83/200 (41%), Positives = 127/200 (63%), Gaps = 6/200 (3%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T++ + P + +M+TCF RFIIV S+LR +G+ PPN ++I +AL +T VM P Sbjct: 50 LMTLVGLLPTMALMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWL 109 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + + P N+QIT T A+ A P FM T +K ++ M + + D Sbjct: 110 NIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKGNAADQ--- 166 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P +SLPFK Sbjct: 167 ---DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFK 223 Query: 225 VIFFVLIDGWSLLVENLVKS 244 ++ FVLIDGWSL + L S Sbjct: 224 LMLFVLIDGWSLTIGTLTTS 243 >gi|71282453|ref|YP_268254.1| flagellar biosynthesis protein FliP [Colwellia psychrerythraea 34H] gi|71148193|gb|AAZ28666.1| flagellar biosynthetic protein FliP [Colwellia psychrerythraea 34H] Length = 252 Score = 164 bits (416), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 85/199 (42%), Positives = 125/199 (62%), Gaps = 4/199 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T LS P +IM+T F R ++V +ILR G+ P N VII L LFMT ++M+P ++ Sbjct: 54 TALSFIPAAVIMMTSFTRIVVVMAILRQAFGLQQTPSNQVIIGLTLFMTLFIMTPVYNQI 113 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 IQP ++ +T T AI P FM TR KDL MA + + Sbjct: 114 DRTAIQPYLSENLTSTEAINLGKIPLRAFMLEQTRVKDLDTLAAMAGIDA----VDEPTD 169 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 + ++IP+F+ISEL+ +F+IGF++ +PFLIID++VA+I+MAMGMMML P +SLPFK++ Sbjct: 170 LPMTVIIPAFIISELKTAFQIGFILFIPFLIIDLVVASILMAMGMMMLSPMIVSLPFKLM 229 Query: 227 FFVLIDGWSLLVENLVKSF 245 FVL+DGW+L++ + S+ Sbjct: 230 LFVLVDGWNLVIGTIATSY 248 >gi|84514806|ref|ZP_01002169.1| Flagellar transport protein FliP [Loktanella vestfoldensis SKA53] gi|84510965|gb|EAQ07419.1| Flagellar transport protein FliP [Loktanella vestfoldensis SKA53] Length = 252 Score = 164 bits (415), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 84/207 (40%), Positives = 139/207 (67%), Gaps = 4/207 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + T+L+I P L+ +T F R II+ SILR MG PPN V+IS+ALF+TFYVM Sbjct: 49 LQILALMTVLTILPSFLLGITAFTRIIIILSILRQAMGTQQTPPNQVLISIALFLTFYVM 108 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +PT + I P + +++ AI+ A F+ NTRE +L++F +MA + Sbjct: 109 APTFEEIYSTTISPYLAGELSAVAAIEGSANIMRGFLILNTREAELAMFAEMAG----DA 164 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 N+ + Y +L+P+F+ SEL+ +F+IGFL+ LPFL+ID+++A+I+M++GMMML P + Sbjct: 165 PYASNEDVPYAVLLPAFITSELKTAFQIGFLLFLPFLVIDLVIASILMSLGMMMLSPMLV 224 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246 +LPFK++ FVL+DGW++ + ++ +++ Sbjct: 225 ALPFKLLLFVLVDGWAMTIGSIASTYV 251 >gi|330809248|ref|YP_004353710.1| flagellar biosynthetic protein fliP [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377356|gb|AEA68706.1| Putative flagellar biosynthetic protein fliP [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 240 Score = 164 bits (415), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 82/206 (39%), Positives = 134/206 (65%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V + T LS P L+I +T F R I+V S+ R +G+ PPN+V+I L++F+T + M Sbjct: 38 VSIVALLTALSFLPFLVISLTTFTRNIVVLSLARQALGLQQTPPNIVLIVLSMFLTLFAM 97 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +PTL+++ + GI+P + N++ A + P FM T E+DL L ++A Sbjct: 98 APTLEKAYDAGIKPFLANKVGLDGAALQGWVPIRDFMIRQTHEEDLRLIYELAKDPLPQA 157 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + L+P+FM+SEL+ +F+IGF+I LPFLIID++VA+I+M++GM+M+PP +I Sbjct: 158 P----EGLSPVKLVPAFMLSELKLAFQIGFMIFLPFLIIDLVVASILMSLGMIMVPPITI 213 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLP K++ F+LIDGW L+ + L+++ Sbjct: 214 SLPLKIMLFLLIDGWGLIAQTLMRNL 239 >gi|331645397|ref|ZP_08346501.1| flagellar biosynthetic protein FliP [Escherichia coli M605] gi|331045559|gb|EGI17685.1| flagellar biosynthetic protein FliP [Escherichia coli M605] Length = 250 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 83/200 (41%), Positives = 127/200 (63%), Gaps = 6/200 (3%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T++ + P +++M+TCF R IIV S+LR +G+ PPN ++I +AL +T VM P Sbjct: 50 LMTLVGLLPTMVLMMTCFTRLIIVLSLLRQALGLQQTPPNRILIGIALSLTLLVMRPIWL 109 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + I P N+QIT T A+ A P FM T +K ++ M + + D Sbjct: 110 NIYDHAIVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKGNAADQ--- 166 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P +SLPFK Sbjct: 167 ---DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFK 223 Query: 225 VIFFVLIDGWSLLVENLVKS 244 ++ FVLIDGWSL + L S Sbjct: 224 LMLFVLIDGWSLTIGTLTTS 243 >gi|327537629|gb|EGF24341.1| flagellar biosynthesis protein FliP [Rhodopirellula baltica WH47] Length = 316 Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 88/207 (42%), Positives = 135/207 (65%), Gaps = 8/207 (3%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T+LS+AP +L+M TC+ R IIV +LR +G+ S+PP+ V+ S+ALFMT +VM+P Sbjct: 108 LLTVLSLAPAILLMTTCYVRIIIVLGLLRQAIGLQSLPPSQVMTSVALFMTLFVMTPVWT 167 Query: 105 RSIEMGIQPLMNNQITET--TAIQRVAEPFWVFM----RNNTREKDLSLFMDMAHSSHRN 158 R + I+P + ++ T A ++ A P FM R E D+ LF + Sbjct: 168 RVYDDAIKPYTDPEVEMTLEEAFEKGAIPIREFMAWQIREARNEDDVVLFY--GYMDPDA 225 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 + D + R+L+P+F++SEL+ SF +GF I LPFLI+D++VA++ ++MGM+MLPP Sbjct: 226 VVPSTFDDVPLRVLLPAFILSELKTSFLMGFQIYLPFLIVDLVVASVTISMGMLMLPPAV 285 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 I+LPFK++ FVL+DGW L+VE L+ SF Sbjct: 286 IALPFKLLLFVLVDGWRLVVEMLMNSF 312 >gi|332162918|ref|YP_004299495.1| Lateral flagellar export/assembly protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667148|gb|ADZ43792.1| Lateral flagellar export/assembly protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862337|emb|CBX72497.1| flagellar biosynthetic protein fliP [Yersinia enterocolitica W22703] Length = 256 Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 84/194 (43%), Positives = 124/194 (63%), Gaps = 10/194 (5%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 PI+++M+TCF RFIIV +ILR +G+ PPN V+ +AL +T VM P + + + Sbjct: 67 PIMMLMMTCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKVHQDAVI 126 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH--RNTDITKNDHIEYR 170 P N++IT A+ R P +M T K L MD+A S + D+T Sbjct: 127 PFQNDEITLPQALARAEVPLKNYMLAQTSTKSLDQMMDIAQVSGEPQQQDLT-------- 178 Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230 ++ P++++SEL+ +F+IGF+I +PFL+ID+IVA+I+MAMGMMML P +SLPFK++ FVL Sbjct: 179 VVTPAYLLSELKTAFQIGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVL 238 Query: 231 IDGWSLLVENLVKS 244 DGW+L+V L S Sbjct: 239 CDGWTLIVGTLTAS 252 >gi|32471369|ref|NP_864362.1| flagellar biosynthesis protein FliP [Rhodopirellula baltica SH 1] gi|32443210|emb|CAD72041.1| flagellar biosynthetic protein fliP-putative tr FT ansporter of flagellar proteins [Rhodopirellula baltica SH 1] Length = 336 Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 89/210 (42%), Positives = 137/210 (65%), Gaps = 14/210 (6%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T+LS+AP +L+M TC+ R IIV +LR +G+ S+PP+ V+ S+ALFMT +VM+P Sbjct: 128 LLTVLSLAPAILLMTTCYVRIIIVLGLLRQAIGLQSLPPSQVMTSVALFMTLFVMTPVWT 187 Query: 105 RSIEMGIQPLMNNQITET--TAIQRVAEPFWVFM----RNNTREKDLSLFMDMAHSSHRN 158 R + I+P + ++ T A ++ A P FM R E D+ LF + + Sbjct: 188 RVYDDAIKPYTDPEVEMTLEEAFEKGAIPIREFMAWQIREARNEDDVVLFY-----GYMD 242 Query: 159 TDI---TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215 D + D + R+L+P+F++SEL+ SF +GF I LPFLI+D++VA++ ++MGM+MLP Sbjct: 243 PDAVVPSTFDDVPLRVLLPAFILSELKTSFLMGFQIYLPFLIVDLVVASVTISMGMLMLP 302 Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 P I+LPFK++ FVL+DGW L+VE L+ SF Sbjct: 303 PAVIALPFKLLLFVLVDGWRLVVEMLMNSF 332 >gi|149928152|ref|ZP_01916398.1| flagellar biosynthesis protein P [Limnobacter sp. MED105] gi|149823137|gb|EDM82375.1| flagellar biosynthesis protein P [Limnobacter sp. MED105] Length = 256 Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 93/193 (48%), Positives = 132/193 (68%), Gaps = 4/193 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P LL+M+T F R +IV S+LR +G + PPN VII L++F+TF++M+P DR E Sbjct: 66 PALLLMMTGFTRIVIVMSLLRMALGTQNSPPNQVIIGLSMFLTFFIMAPVFDRVYENAYL 125 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P NN+I +R + P FM TRE DL+LFM + + + + + R+L Sbjct: 126 PFSNNEIEFQEMTERASVPMKDFMLKQTREPDLALFMRLGKVEN----VENPEDVPLRVL 181 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 IP+F+ SEL+ +F+IGF+I LPFL+ID+IVA+++M+MGMMML P ISLPFK++ FVL+D Sbjct: 182 IPAFVTSELKTAFQIGFMIFLPFLVIDLIVASVLMSMGMMMLSPMLISLPFKIMLFVLVD 241 Query: 233 GWSLLVENLVKSF 245 GW+LLV +LV SF Sbjct: 242 GWTLLVGSLVASF 254 >gi|256376457|ref|YP_003100117.1| flagellar biosynthesis protein FliP [Actinosynnema mirum DSM 43827] gi|255920760|gb|ACU36271.1| flagellar biosynthetic protein FliP [Actinosynnema mirum DSM 43827] Length = 293 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 75/200 (37%), Positives = 127/200 (63%), Gaps = 4/200 (2%) Query: 46 FTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDR 105 T+LS+AP LL++ T F + +V SI R +G+ +VPPN V+ LALF++ ++M P Sbjct: 97 LTVLSVAPALLLLCTSFTKVFVVLSITRNALGLTTVPPNQVLAGLALFLSLFIMGPVASE 156 Query: 106 SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165 + GIQP + + + A + ++P FM TR ++++LF ++ + Sbjct: 157 VNDQGIQPYLKGEKSTEQAFEDGSKPLREFMVKQTRPEEIALFTKVSGQEKP----ANAE 212 Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225 + LIP+F++SELR + IGF++ +PFL+IDM+V+ +M++GMMMLPP +++LPFK+ Sbjct: 213 SVPLTTLIPAFVLSELRAAMIIGFVLYIPFLVIDMVVSAALMSLGMMMLPPVTVALPFKL 272 Query: 226 IFFVLIDGWSLLVENLVKSF 245 + FVL +GW L++ LV ++ Sbjct: 273 LLFVLANGWGLVITALVATY 292 >gi|261855324|ref|YP_003262607.1| flagellar biosynthesis protein FliP [Halothiobacillus neapolitanus c2] gi|261835793|gb|ACX95560.1| flagellar biosynthetic protein FliP [Halothiobacillus neapolitanus c2] Length = 274 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 85/186 (45%), Positives = 128/186 (68%), Gaps = 4/186 (2%) Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R IIV S++R +G+ P N ++I LALF+T ++M+P +S + GI+P M+ +I Sbjct: 85 TSFTRIIIVLSLMRQALGLTQTPSNQILIGLALFLTLFIMAPVFQKSYDEGIKPYMDQKI 144 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 T AI++ AEP FM N TR+ D++LF ++ H T + Y +L+ +F+ S Sbjct: 145 TANVAIEKAAEPLRTFMLNQTRQSDIALFQNIGHYPAFETP----KDVPYTVLMAAFITS 200 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+ +FEIGFLI +PFLIID++VA+++M+MGMMML P +SLPFK++ FVL+DGW+L++ Sbjct: 201 ELKTAFEIGFLIFIPFLIIDLVVASVLMSMGMMMLSPMIVSLPFKLMLFVLVDGWTLIMG 260 Query: 240 NLVKSF 245 L SF Sbjct: 261 TLASSF 266 >gi|68164510|gb|AAY87239.1| predicted flagellar biosynthesis protein [uncultured bacterium BAC17H8] Length = 256 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 81/193 (41%), Positives = 127/193 (65%), Gaps = 4/193 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P L++ +T F R IIV SILR MG PPN V++++ALF+TF++M+PTL I Sbjct: 65 PSLVLGMTSFTRIIIVLSILRQAMGTQQTPPNQVLVAIALFLTFFIMAPTLTTLNSDVIS 124 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P ++ Q+ TA+ E F+ NTR DL +F +M + + + +L Sbjct: 125 PYLDGQLPAETALANGTEVMKRFLVQNTRVNDLVMFTEMIG----DQPYASAEDVPLSVL 180 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 +P+F+ SEL+ +F+IGFL+ LPFL+IDM++A+I+M++GMMML P ++LPFK++ FVL+D Sbjct: 181 LPAFITSELKTAFQIGFLLFLPFLVIDMVIASILMSLGMMMLSPMLVALPFKLLLFVLVD 240 Query: 233 GWSLLVENLVKSF 245 GW++ V +LV ++ Sbjct: 241 GWAMTVGSLVATY 253 >gi|170021379|ref|YP_001726333.1| flagellar biosynthesis protein FliP [Escherichia coli ATCC 8739] gi|169756307|gb|ACA79006.1| flagellar biosynthetic protein FliP [Escherichia coli ATCC 8739] Length = 250 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 82/200 (41%), Positives = 128/200 (64%), Gaps = 6/200 (3%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T++ + P +++M+TCF RFIIV S+LR +G+ PPN ++I +AL +T VM P Sbjct: 50 LMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWL 109 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + + P N++IT T A+ A P FM T +K ++ M + + D Sbjct: 110 NIYDHAVVPFENDRITLTDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKGNAADQ--- 166 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P +SLPFK Sbjct: 167 ---DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFK 223 Query: 225 VIFFVLIDGWSLLVENLVKS 244 ++ FVLIDGWSL + L S Sbjct: 224 LMLFVLIDGWSLTIGTLTTS 243 >gi|103488403|ref|YP_617964.1| flagellar biosynthesis protein FliP [Sphingopyxis alaskensis RB2256] gi|98978480|gb|ABF54631.1| flagellar biosynthetic protein FliP [Sphingopyxis alaskensis RB2256] Length = 256 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 82/188 (43%), Positives = 120/188 (63%), Gaps = 4/188 (2%) Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 M+T F R IIV SILR +G+ PPN V++ L+LF++ +VM P + + I+P Sbjct: 71 MMTSFTRIIIVLSILRHALGLQQTPPNQVLVGLSLFLSLFVMQPVISEVNRVAIEPYGQE 130 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177 QI A+ R + FM TR+ DL +F +A R + + IL+P+F+ Sbjct: 131 QIDIGEAVSRSGDALHGFMMKQTRKTDLMMFAKIA----RAPAYASPKDVPFSILLPAFV 186 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 SEL+ +F+IGFLI LPFL+ID+IVA+ +M++GMMML PT IS+PFK++ FVL+DGW+L Sbjct: 187 TSELKTAFQIGFLIFLPFLVIDLIVASALMSLGMMMLSPTIISMPFKLLLFVLVDGWALT 246 Query: 238 VENLVKSF 245 + +L SF Sbjct: 247 MGSLAASF 254 >gi|91200236|emb|CAJ73280.1| strongly similar to polar flagellar assembly protein FliP [Candidatus Kuenenia stuttgartiensis] Length = 254 Score = 163 bits (412), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 80/185 (43%), Positives = 123/185 (66%), Gaps = 4/185 (2%) Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R IIV S +R + ++PPN ++I +ALF+TF+VM+P +QP + +I Sbjct: 72 TSFTRIIIVLSFVRKALSFHTLPPNQILIGIALFLTFFVMTPVWTAINSDALQPYIKEEI 131 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 T+ A+++ EP FM TR+KD++LF ++A + I ILIP+F+ S Sbjct: 132 TQDEALKKGIEPVRKFMLKQTRKKDIALFSNIAKVEKPFS----ASDIPMHILIPAFVTS 187 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+ SF++GFL+ LPFL+ID++VA ++ +MGM MLPP IS+PFK+I FVL+DGW L+++ Sbjct: 188 ELKTSFQMGFLLFLPFLVIDLVVACVLTSMGMFMLPPVMISMPFKLILFVLVDGWQLIIQ 247 Query: 240 NLVKS 244 +L+ S Sbjct: 248 SLITS 252 >gi|254973925|ref|ZP_05270397.1| flagellar biosynthesis protein FliP [Clostridium difficile QCD-66c26] gi|255091312|ref|ZP_05320790.1| flagellar biosynthesis protein FliP [Clostridium difficile CIP 107932] gi|255305286|ref|ZP_05349458.1| flagellar biosynthesis protein FliP [Clostridium difficile ATCC 43255] gi|255312969|ref|ZP_05354552.1| flagellar biosynthesis protein FliP [Clostridium difficile QCD-76w55] gi|255515728|ref|ZP_05383404.1| flagellar biosynthesis protein FliP [Clostridium difficile QCD-97b34] gi|255648822|ref|ZP_05395724.1| flagellar biosynthesis protein FliP [Clostridium difficile QCD-37x79] gi|260682041|ref|YP_003213326.1| flagellar biosynthesis protein FliP [Clostridium difficile CD196] gi|260685639|ref|YP_003216772.1| flagellar biosynthesis protein FliP [Clostridium difficile R20291] gi|306518937|ref|ZP_07405284.1| flagellar biosynthesis protein FliP [Clostridium difficile QCD-32g58] gi|260208204|emb|CBA60554.1| flagellar biosynthetic protein [Clostridium difficile CD196] gi|260211655|emb|CBE01917.1| flagellar biosynthetic protein [Clostridium difficile R20291] Length = 221 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 78/205 (38%), Positives = 129/205 (62%), Gaps = 3/205 (1%) Query: 41 RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100 + F T L P ++ M+T F R +I S L++ +G P+ +++ LA+ +T ++M Sbjct: 19 QLFLFLTALMFLPFVMFMMTSFVRIVISLSFLKSALGAQQAIPSQILVGLAIVLTIFIMR 78 Query: 101 PTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD 160 P L+ E +QP M ++T A++ P F+ TR+ DL LF++ A + Sbjct: 79 PVLNEINEKALQPYMKEEVTMEEAMKEAEGPIKEFLLKQTRQTDLDLFVEQAGLKEKKLT 138 Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220 ++I +++P+F ISEL+ +F+IGFLI +PFLIID++VA+++M+MGM MLPP IS Sbjct: 139 ---RENIPLSVVVPAFAISELKTAFQIGFLIYIPFLIIDLVVASVLMSMGMFMLPPVMIS 195 Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245 LPFK++ FV++DGW+L+V+ L+ F Sbjct: 196 LPFKLLLFVMVDGWNLIVKTLILGF 220 >gi|238752883|ref|ZP_04614348.1| Lateral flagellar export/assembly protein (FliP-like) [Yersinia rohdei ATCC 43380] gi|238708922|gb|EEQ01175.1| Lateral flagellar export/assembly protein (FliP-like) [Yersinia rohdei ATCC 43380] Length = 248 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 84/194 (43%), Positives = 124/194 (63%), Gaps = 10/194 (5%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 PI+++M+TCF RFIIV +ILR +G+ PPN V+ +AL +T VM P + E + Sbjct: 59 PIMMLMMTCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKIHEDAVI 118 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH--SSHRNTDITKNDHIEYR 170 P N++IT A++R P +M T K L MD+A + D+T Sbjct: 119 PFQNDEITLPQALRRAEIPLKNYMLAQTSTKSLEQMMDIAQVTGEPQQQDLT-------- 170 Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230 ++ P++++SEL+ +F+IGF+I +PFL+ID+IVA+I+MAMGMMML P +SLPFK++ FVL Sbjct: 171 VVTPAYVLSELKTAFQIGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVL 230 Query: 231 IDGWSLLVENLVKS 244 DGW+L+V L S Sbjct: 231 CDGWTLIVGTLTAS 244 >gi|126697832|ref|YP_001086729.1| flagellar biosynthesis protein FliP [Clostridium difficile 630] gi|255099428|ref|ZP_05328405.1| flagellar biosynthesis protein FliP [Clostridium difficile QCD-63q42] gi|115249269|emb|CAJ67082.1| Flagellar biosynthesis protein FliP [Clostridium difficile] Length = 221 Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 78/205 (38%), Positives = 129/205 (62%), Gaps = 3/205 (1%) Query: 41 RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100 + F T L P ++ M+T F R +I S L++ +G P+ +++ LA+ +T ++M Sbjct: 19 QLFLFLTALMFLPFVMFMMTSFVRIVISLSFLKSALGAQQAIPSQILVGLAIVLTIFIMR 78 Query: 101 PTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD 160 P L+ E +QP M ++T A++ P F+ TR+ DL LF++ A + Sbjct: 79 PVLNEINEKALQPYMKEEVTMEEAMKEAEGPIKEFLLTQTRQTDLDLFVEQAGLKEKKLT 138 Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220 ++I +++P+F ISEL+ +F+IGFLI +PFLIID++VA+++M+MGM MLPP IS Sbjct: 139 ---RENIPLSVVVPAFAISELKTAFQIGFLIYIPFLIIDLVVASVLMSMGMFMLPPVMIS 195 Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245 LPFK++ FV++DGW+L+V+ L+ F Sbjct: 196 LPFKLLLFVMVDGWNLIVKTLILGF 220 >gi|323171041|gb|EFZ56690.1| flagellar biosynthetic protein FliP [Escherichia coli LT-68] Length = 250 Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 82/200 (41%), Positives = 127/200 (63%), Gaps = 6/200 (3%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T++ + P +++M+TCF RFIIV S+LR +G+ PPN ++I +AL +T VM P Sbjct: 50 LMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWL 109 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + + P N+QI + A+ A P FM T +K ++ M + + D Sbjct: 110 NIYDHAVVPFENDQIPLSDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKGNAADQ--- 166 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P +SLPFK Sbjct: 167 ---DLTIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFK 223 Query: 225 VIFFVLIDGWSLLVENLVKS 244 +I FVLIDGWSL + L S Sbjct: 224 LILFVLIDGWSLTIGTLTTS 243 >gi|307824489|ref|ZP_07654714.1| flagellar biosynthetic protein FliP [Methylobacter tundripaludum SV96] gi|307734473|gb|EFO05325.1| flagellar biosynthetic protein FliP [Methylobacter tundripaludum SV96] Length = 252 Score = 162 bits (409), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 85/186 (45%), Positives = 130/186 (69%), Gaps = 4/186 (2%) Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R +IV S+LRT +G GS P N V++ L++F+T ++M P D+ +QP + +I Sbjct: 68 TSFTRIMIVLSLLRTALGTGSAPSNQVLLGLSMFLTIFIMMPVFDKVNAEAVQPYLEEKI 127 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 T AI++ +EPF FM TRE DL LF+ ++ + ++ +++ + +L+P+F+ S Sbjct: 128 DVTVAIEKASEPFRQFMLKQTREADLELFIRISGKA----ELESAENVPFSLLLPAFVTS 183 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+ +F+IGFLI LPFL+ID++VA+++M+MGMMML P ISLPFK++ FVL DGWSL++E Sbjct: 184 ELKTAFQIGFLIFLPFLVIDLVVASVLMSMGMMMLSPMIISLPFKIMLFVLADGWSLIME 243 Query: 240 NLVKSF 245 L SF Sbjct: 244 MLAASF 249 >gi|114798811|ref|YP_758976.1| flagellar biosynthesis protein FliP [Hyphomonas neptunium ATCC 15444] gi|114738985|gb|ABI77110.1| flagellar biosynthetic protein FliP [Hyphomonas neptunium ATCC 15444] Length = 252 Score = 161 bits (408), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 87/227 (38%), Positives = 144/227 (63%), Gaps = 5/227 (2%) Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 A ++L ++N D +S+ +V+ + T+LS+ P + +MVTC P +IVFS +R +G+ Sbjct: 29 APAALDGLLNPSGDGQLSSSVVQLVLLVTVLSLVPGIAMMVTCLPFMVIVFSFMRQAIGV 88 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 PPN++I++LA+F+TF+VM P + E GI P M+ + E A +PF FM Sbjct: 89 QQAPPNMMIMALAMFLTFFVMEPVFMSAWENGISPYMDGVLDEQQAWALSTDPFRAFMMQ 148 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 T + L D N + + + + +L +FM+SE++ +F+IGF+I LPF++I Sbjct: 149 RTDPEALLTLGDAV-----NRPVVEGEDPAFSLLATAFMLSEIKHAFQIGFVIFLPFMVI 203 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 D++VA+++MA+GMMM+PPT +SLPFK+ FFVL DGW + E +++ + Sbjct: 204 DLVVASVLMAVGMMMVPPTVVSLPFKLGFFVLADGWLKITEAVLRGY 250 >gi|331666527|ref|ZP_08367401.1| flagellar biosynthetic protein FliP [Escherichia coli TA271] gi|331065751|gb|EGI37635.1| flagellar biosynthetic protein FliP [Escherichia coli TA271] Length = 250 Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 81/200 (40%), Positives = 127/200 (63%), Gaps = 6/200 (3%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T++ + P +++M+TCF RFIIV S+LR +G+ PPN ++I +AL +T VM P Sbjct: 50 LMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWL 109 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + + P N+QI + A+ A P FM T +K ++ M + + D Sbjct: 110 NIYDHAVVPFENDQIPLSDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKGHAADQ--- 166 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P +SLPFK Sbjct: 167 ---DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFK 223 Query: 225 VIFFVLIDGWSLLVENLVKS 244 ++ FVLIDGWSL + L S Sbjct: 224 LMLFVLIDGWSLTIGTLTTS 243 >gi|326386956|ref|ZP_08208569.1| flagellar biosynthesis protein FliP [Novosphingobium nitrogenifigens DSM 19370] gi|326208565|gb|EGD59369.1| flagellar biosynthesis protein FliP [Novosphingobium nitrogenifigens DSM 19370] Length = 300 Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 86/194 (44%), Positives = 128/194 (65%), Gaps = 4/194 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P L++M+T F R +IV ++LR +G+ PPN V+I L+LF++ +VM PTLDR IQ Sbjct: 111 PSLVLMMTSFTRILIVLALLRQALGLQQSPPNPVLIGLSLFLSLFVMGPTLDRVNANAIQ 170 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P I A F FM TRE DL +F DMAH+ + + IL Sbjct: 171 PYSAGTINAEQAFVNGGREFHAFMIRQTREHDLLMFADMAHAPR----FASPADVPWTIL 226 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 +P+F+ SEL+ +F+IGF++ LPFL+ID++V++++M++GMMM+ PT ISLPFK++ FVL+D Sbjct: 227 LPAFVTSELKTAFQIGFMLFLPFLVIDLVVSSVLMSLGMMMMSPTVISLPFKLLLFVLVD 286 Query: 233 GWSLLVENLVKSFI 246 GW+LL+ +L SF+ Sbjct: 287 GWALLMGSLASSFV 300 >gi|257095348|ref|YP_003168989.1| flagellar biosynthesis protein FliP [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047872|gb|ACV37060.1| flagellar biosynthetic protein FliP [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 250 Score = 161 bits (407), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 92/193 (47%), Positives = 132/193 (68%), Gaps = 4/193 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P L+M+T F R IIV S+LR +G + PPN V++ L+LF+TF++MSP LD Sbjct: 60 PAALLMMTSFTRIIIVLSLLRHALGTQTSPPNQVLLGLSLFLTFFIMSPVLDTVYTEAYL 119 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 PL N+IT AI+R A P FM TRE D++LF M ++ + D I R+L Sbjct: 120 PLSENRITYLQAIERGAVPLRKFMLKQTREADIALFARMTNAPRFQS----TDDIPMRLL 175 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 IP+F+ SEL+ +F+IGF+I +PFLI+DM+VA+++M+MGMMM+ P ++LPFK++ FVL+D Sbjct: 176 IPAFVTSELKTAFQIGFIIFIPFLIVDMVVASVLMSMGMMMMSPVMVALPFKLMLFVLVD 235 Query: 233 GWSLLVENLVKSF 245 GW LL+ +LV SF Sbjct: 236 GWHLLLGSLVASF 248 >gi|306817703|ref|ZP_07451445.1| flagellar biosynthetic protein FliP [Mobiluncus mulieris ATCC 35239] gi|304649517|gb|EFM46800.1| flagellar biosynthetic protein FliP [Mobiluncus mulieris ATCC 35239] Length = 425 Score = 161 bits (407), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 82/209 (39%), Positives = 136/209 (65%), Gaps = 4/209 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 T V F + T+LS+AP LL+M+T F + IV ++ R +G+ +PP V+ LA+F++ Sbjct: 220 TTTVLVFLLITVLSVAPSLLLMMTSFTKIFIVLAMARNALGLNQIPPTQVLSGLAIFLSL 279 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 ++M+PT++ +QPL + +I + +PF FM TRE+D++L M +++ Sbjct: 280 FIMAPTVNTLWTDVVQPLTDGKIEVQEVFKLGEKPFRDFMGPLTREEDIAL---MTRAAN 336 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 R + D + L+P+FMISE+R +F IGF++ +PFL+ID++V +M+MGMMMLPP Sbjct: 337 R-PNPESLDKTPFTTLVPAFMISEVRSAFIIGFVVFIPFLVIDLVVGAALMSMGMMMLPP 395 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +SLPFKV+ FV++DGW +L + L+ ++ Sbjct: 396 VMVSLPFKVLLFVMVDGWGMLTQTLIGTY 424 >gi|322432985|ref|YP_004210234.1| flagellar biosynthetic protein FliP [Acidobacterium sp. MP5ACTX9] gi|321165212|gb|ADW70916.1| flagellar biosynthetic protein FliP [Acidobacterium sp. MP5ACTX9] Length = 236 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 77/203 (37%), Positives = 130/203 (64%), Gaps = 8/203 (3%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T LS+ P LL+ +T F R +IVF LR +G+ + P N +I L++ MTF++M P Sbjct: 39 LLTFLSLIPSLLLCITPFARLLIVFHFLRQALGLQTTPSNQTLIGLSMIMTFFLMQPVGA 98 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSS--HRNTDIT 162 + + PL IT A++R P FM + R+KD++LF+++A H D++ Sbjct: 99 VIYDTAVTPLQAGTITPLQALERAGTPMRQFMAHYVRDKDVALFLELAKEPRPHNVQDLS 158 Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222 +R+++P++++SEL+ F+IG ++ LPFL++DM+VA+I ++GMM LPP IS P Sbjct: 159 ------FRVMLPAYILSELKAGFQIGTVLFLPFLVVDMVVASITTSVGMMQLPPVVISTP 212 Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245 K++ F+++DGW LL+ +L++SF Sbjct: 213 LKLLLFLMVDGWHLLISSLMRSF 235 >gi|307701549|ref|ZP_07638566.1| flagellar biosynthetic protein FliP [Mobiluncus mulieris FB024-16] gi|307613228|gb|EFN92480.1| flagellar biosynthetic protein FliP [Mobiluncus mulieris FB024-16] Length = 462 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 82/209 (39%), Positives = 136/209 (65%), Gaps = 4/209 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 T V F + T+LS+AP LL+M+T F + IV ++ R +G+ +PP V+ LA+F++ Sbjct: 257 TTTVLVFLLITVLSVAPSLLLMMTSFTKIFIVLAMARNALGLNQIPPTQVLSGLAIFLSL 316 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 ++M+PT++ +QPL + +I + +PF FM TRE+D++L M +++ Sbjct: 317 FIMAPTVNTLWTDVVQPLTDGKIEVQEVFKLGEKPFRDFMGPLTREEDIAL---MTRAAN 373 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 R + D + L+P+FMISE+R +F IGF++ +PFL+ID++V +M+MGMMMLPP Sbjct: 374 R-PNPESLDKTPFTTLVPAFMISEVRSAFIIGFVVFIPFLVIDLVVGAALMSMGMMMLPP 432 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +SLPFKV+ FV++DGW +L + L+ ++ Sbjct: 433 VMVSLPFKVLLFVMVDGWGMLTQTLIGTY 461 >gi|183221911|ref|YP_001839907.1| flagellar biosynthesis protein FliP [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911980|ref|YP_001963535.1| flagellar biosynthesis protein FliP [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776656|gb|ABZ94957.1| Endoflagellar biosynthesis pathway protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780333|gb|ABZ98631.1| Flagellar biosynthetic protein FliP; putative membrane protein; putative signal peptide [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 269 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 84/219 (38%), Positives = 147/219 (67%), Gaps = 10/219 (4%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P + S+S I+ + TILS+AP +++ VT F + +IVF +R + + ++PPN V++ Sbjct: 57 PKETSLSLMILF---LVTILSLAPAIVMSVTSFTKVVIVFDFVRRALSLQNLPPNQVMMG 113 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM-RNNTRE--KDLS 146 LALF+TF++M+PT+ + + +QP +N +I ++ ++ + FM R ++ KD++ Sbjct: 114 LALFVTFFIMAPTIGKVNDEALQPYLNGKIDQSAFMEGSMKHLRQFMIRQLGKDGTKDVA 173 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 LF+ + + ++ + + +L+P+FM+SE++++F IG I +PF++ID+IVA+ + Sbjct: 174 LFLKIG----KVQNVKSFEDVPSYVLVPAFMLSEIKKAFIIGIYIFIPFIVIDLIVASAL 229 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +AMG MMLPP ISLP K+I F+LIDGW+LLV LV+S+ Sbjct: 230 LAMGFMMLPPVMISLPLKLILFILIDGWNLLVLELVRSY 268 >gi|227873535|ref|ZP_03991780.1| flagellar biosynthesis protein FliP [Oribacterium sinus F0268] gi|227840625|gb|EEJ51010.1| flagellar biosynthesis protein FliP [Oribacterium sinus F0268] Length = 218 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 80/203 (39%), Positives = 127/203 (62%), Gaps = 8/203 (3%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T++++ P ++IM+T F R II+ S R MG+ PPN+V+ +A F+T Y+MSPTL+ Sbjct: 21 LLTLVALLPSIVIMMTSFTRIIIILSFTRNAMGVQQTPPNMVLAGIAFFLTLYIMSPTLN 80 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + +P +T+ A+ + + FM NT + L F+ M+ + Sbjct: 81 KINTEAYEPYKKGTVTQEEALNIMGKDMKEFMLRNTEKATLDRFVSMSKVE------LQK 134 Query: 165 DHIEY--RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222 D +Y ++ P+FM SEL+R F GFLI LPFL+ID++V+T +MAMGM+MLPP +S+P Sbjct: 135 DPKDYPLTVVTPAFMTSELKRGFTAGFLIYLPFLLIDVVVSTTLMAMGMVMLPPAMVSMP 194 Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245 FK++ F+ +DGW+LL ++V SF Sbjct: 195 FKLLLFITVDGWNLLFSSVVNSF 217 >gi|300936103|ref|ZP_07151044.1| flagellar biosynthetic protein FliP [Escherichia coli MS 21-1] gi|300458752|gb|EFK22245.1| flagellar biosynthetic protein FliP [Escherichia coli MS 21-1] Length = 194 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 81/188 (43%), Positives = 120/188 (63%), Gaps = 6/188 (3%) Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116 +M+TCF RFIIV S+LR +G+ PPN ++I +AL +T VM P + + P N Sbjct: 6 LMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTLLVMRPIWLNIYDHAVVPFEN 65 Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176 +QIT T A+ A P FM T +K ++ M + + D + I++P++ Sbjct: 66 DQITLTDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKGNAADQ------DLSIVVPAY 119 Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236 ++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P +SLPFK++ FVLIDGWSL Sbjct: 120 VLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWSL 179 Query: 237 LVENLVKS 244 + L S Sbjct: 180 TIGTLTTS 187 >gi|227876756|ref|ZP_03994865.1| possible flagellar biosynthesis protein FliP [Mobiluncus mulieris ATCC 35243] gi|227842653|gb|EEJ52853.1| possible flagellar biosynthesis protein FliP [Mobiluncus mulieris ATCC 35243] Length = 502 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 80/203 (39%), Positives = 134/203 (66%), Gaps = 4/203 (1%) Query: 43 FGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT 102 F + T+LS+AP LL+M+T F + IV ++ R +G+ +PP V+ LA+F++ ++M+PT Sbjct: 303 FLLITVLSVAPSLLLMMTSFTKIFIVLAMARNALGLNQIPPTQVLSGLAIFLSLFIMAPT 362 Query: 103 LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT 162 ++ +QPL + +I + +PF FM TRE+D++L M +++R + Sbjct: 363 VNTLWTDVVQPLTDGKIEVQEVFKLGEKPFRDFMGPLTREEDIAL---MTRAANR-PNPE 418 Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222 D + L+P+FMISE+R +F IGF++ +PFL+ID++V +M+MGMMMLPP +SLP Sbjct: 419 SLDKTPFTTLVPAFMISEVRSAFIIGFVVFIPFLVIDLVVGAALMSMGMMMLPPVMVSLP 478 Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245 FKV+ FV++DGW +L + L+ ++ Sbjct: 479 FKVLLFVMVDGWGMLTQTLIGTY 501 >gi|269976283|ref|ZP_06183279.1| flagellar biosynthesis protein FliP [Mobiluncus mulieris 28-1] gi|269935612|gb|EEZ92150.1| flagellar biosynthesis protein FliP [Mobiluncus mulieris 28-1] Length = 528 Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 79/203 (38%), Positives = 132/203 (65%), Gaps = 4/203 (1%) Query: 43 FGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT 102 F + T+LS+AP LL+M+T F + IV ++ R +G+ +PP V+ LA+F++ ++M+PT Sbjct: 329 FLLITVLSVAPSLLLMMTSFTKIFIVLAMARNALGLNQIPPTQVLSGLAIFLSLFIMAPT 388 Query: 103 LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT 162 ++ +QPL + +I + +PF FM TRE+D++L A+ + + Sbjct: 389 VNTLWTDVVQPLTDGKIEVQEVFKLGEKPFRDFMGPLTREEDIALMTRAANRPNPES--- 445 Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222 D + L+P+FMISE+R +F IGF++ +PFL+ID++V +M+MGMMMLPP +SLP Sbjct: 446 -LDKTPFTTLVPAFMISEVRSAFIIGFVVFIPFLVIDLVVGAALMSMGMMMLPPVMVSLP 504 Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245 FKV+ FV++DGW +L + L+ ++ Sbjct: 505 FKVLLFVMVDGWGMLTQTLIGTY 527 >gi|332294877|ref|YP_004436800.1| flagellar biosynthetic protein FliP [Thermodesulfobium narugense DSM 14796] gi|332177980|gb|AEE13669.1| flagellar biosynthetic protein FliP [Thermodesulfobium narugense DSM 14796] Length = 248 Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 94/216 (43%), Positives = 142/216 (65%), Gaps = 7/216 (3%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P D++ S ++ I TIL+ AP+LL+M T F R +IVF LR +G+ + P +II Sbjct: 38 PNDIANS---LKVLFILTILAFAPLLLLMTTSFLRLVIVFGFLRNALGIQQIIPGQIIIG 94 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 L+LF+T ++M+P + + + P QIT AI+R P FM +NTR+ DLSL + Sbjct: 95 LSLFLTLFIMTPIIQKIEQDAYTPYQKGQITFQDAIERGYIPLRDFMLHNTRKSDLSLMI 154 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 +++ + N+ + I ++I +F++SEL+ SF IG +I LPF+IID+ VA+I+M+M Sbjct: 155 ELSRTPRPNSV----NEIAPTVVISAFVLSELKTSFIIGIVIYLPFVIIDLAVASILMSM 210 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMM+PP ISLP K++ FVL DGWSLLV++L+ SF Sbjct: 211 GMMMIPPVMISLPLKILLFVLADGWSLLVKSLIASF 246 >gi|94968670|ref|YP_590718.1| flagellar biosynthesis protein FliP [Candidatus Koribacter versatilis Ellin345] gi|94550720|gb|ABF40644.1| flagellar biosynthetic protein FliP [Candidatus Koribacter versatilis Ellin345] Length = 244 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 87/242 (35%), Positives = 147/242 (60%), Gaps = 12/242 (4%) Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSIST-WIVRTFGIFTILSIAPILLIMVTCFP 63 CF L + P L + H V N+PA + +T W + + T +++ P +L+ +T F Sbjct: 13 CFGMLSISRPAL----GADHGV-NLPAIGNNATPWTIVV--LLTAVTLLPAVLLCMTPFV 65 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 R ++VF LR +G + P N ++ L L +T ++M P + + + P+ +I+ T Sbjct: 66 RLLVVFHFLRQALGTQTAPTNQTLVGLTLILTLFLMQPVITHIQQDALTPMQQGKISVTE 125 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 AI R AEP FM +REKDL+LF+++A T + + +R++ P++++SEL+ Sbjct: 126 AISRGAEPVRQFMLRFSREKDLALFVELAKLPPPKT----SQDLPFRVVAPAYILSELKA 181 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 F+IG ++ LPFL+ID+++A I ++GMM LPP IS P K++ FV++DGW+LL+ +L+K Sbjct: 182 GFQIGAVLFLPFLVIDLVIAAITTSVGMMQLPPVVISTPVKILLFVMVDGWNLLIASLMK 241 Query: 244 SF 245 SF Sbjct: 242 SF 243 >gi|94496750|ref|ZP_01303325.1| Type III secretory pathway, component EscR [Sphingomonas sp. SKA58] gi|94423763|gb|EAT08789.1| Type III secretory pathway, component EscR [Sphingomonas sp. SKA58] Length = 216 Score = 158 bits (400), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 73/203 (35%), Positives = 127/203 (62%), Gaps = 1/203 (0%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + ++++AP +MVT F + ++V S+LR +G+ VPPN+V+ +AL ++ YVM PT+ Sbjct: 14 VVVLIALAPFFAVMVTSFTKIVVVLSLLRNALGLQQVPPNVVLNGMALVLSVYVMYPTMQ 73 Query: 105 RSIEMGIQPLMNNQITET-TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163 + Q + +Q +E +A R EP F+ ++ + + F+ + + Sbjct: 74 QMAAASGQQAVPSQTSEIFSAADRAKEPLRAFLIKHSAADERAFFLRTQQRVAKQSGTQA 133 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 ++ +++P+F++ EL +F+IGFLI LPFL+ID++++ I++AMGMMML P +ISLPF Sbjct: 134 ASATDFIVVVPAFVVRELTVAFQIGFLIFLPFLVIDLVISNILLAMGMMMLSPVTISLPF 193 Query: 224 KVIFFVLIDGWSLLVENLVKSFI 246 K++ FVL+DGW L LV S++ Sbjct: 194 KILLFVLVDGWVKLSHGLVLSYV 216 >gi|325109027|ref|YP_004270095.1| flagellar biosynthetic protein FliP [Planctomyces brasiliensis DSM 5305] gi|324969295|gb|ADY60073.1| flagellar biosynthetic protein FliP [Planctomyces brasiliensis DSM 5305] Length = 340 Score = 158 bits (400), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 90/212 (42%), Positives = 128/212 (60%), Gaps = 20/212 (9%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP L+IM TCF R I+V +LR +G +PPN V++SL+LFMT +M P S G+ Sbjct: 108 APSLVIMTTCFVRMIVVLGLLRQALGTQQLPPNQVLVSLSLFMTIMIMWPVWQESYRAGV 167 Query: 112 QPLMNNQITETTA---------IQRVAEPFWVFMRNN----TREKDLSLFMDMAHSSHRN 158 QP ++ ETTA ++R EP FM + E + +F+D + Sbjct: 168 QPY-SSSTYETTADQEEGLQLALERSLEPIRNFMSDQIYRTGNENAVWMFIDYQKPAEGT 226 Query: 159 ------TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 T+ + +LIP+FM+SEL+ +F IGF I LPF+IIDM++A+I+++MGMM Sbjct: 227 AAAETWTEPQSFADVPTTVLIPAFMMSELKTAFVIGFQIYLPFIIIDMVIASILISMGMM 286 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 MLPP ISLPFK++ FVL+DGW L VE L++S Sbjct: 287 MLPPVLISLPFKLLLFVLVDGWYLTVEMLLQS 318 >gi|153950465|ref|YP_001399618.1| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis IP 31758] gi|152961960|gb|ABS49421.1| flagellar biosynthetic protein FliP [Yersinia pseudotuberculosis IP 31758] Length = 256 Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 80/192 (41%), Positives = 121/192 (63%), Gaps = 6/192 (3%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 PI+++M+TCF RFIIV +ILR +G+ PPN V+ +AL +T VM P + + + Sbjct: 67 PIMMLMMTCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKIHQDAVI 126 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P ++IT + A+ R P +M T K L M +A S + + ++ Sbjct: 127 PFQQDEITLSQALGRAEVPLKNYMLAQTSTKSLDQMMAIAQVSG------EPQQQDLSVV 180 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 P++++SEL+ +F+IGF+I +PFL+ID+IVA+I+MAMGMMML P +SLPFK++ FVL D Sbjct: 181 TPAYVLSELKTAFQIGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCD 240 Query: 233 GWSLLVENLVKS 244 GW+L+V L S Sbjct: 241 GWTLMVGTLTAS 252 >gi|261341515|ref|ZP_05969373.1| flagellar biosynthetic protein FliP [Enterobacter cancerogenus ATCC 35316] gi|288316313|gb|EFC55251.1| flagellar biosynthetic protein FliP [Enterobacter cancerogenus ATCC 35316] Length = 250 Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 82/194 (42%), Positives = 121/194 (62%), Gaps = 10/194 (5%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P++L+M+TCF RFIIV +ILR +G+ PPN ++ +AL +T VM P + I Sbjct: 61 PVMLMMMTCFTRFIIVLAILRQALGLQQSPPNKILTGIALALTLLVMRPVWTTIYQDAIV 120 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH--SSHRNTDITKNDHIEYR 170 P N++IT A + P FM T K +S M +A + D+T Sbjct: 121 PFQNDEITMKQAFGKAEAPLKNFMLAQTSNKAMSQMMTIAGVTGDPKEQDLT-------- 172 Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230 ++ P++++SEL+ +F+IGF+I +PFL+ID+IVA+I+MAMGMMML P +SLPFK++ FVL Sbjct: 173 VVTPAYLLSELKTAFQIGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVL 232 Query: 231 IDGWSLLVENLVKS 244 DGW+L+V L S Sbjct: 233 CDGWTLIVGTLTSS 246 >gi|186896787|ref|YP_001873899.1| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis PB1/+] gi|186699813|gb|ACC90442.1| flagellar biosynthetic protein FliP [Yersinia pseudotuberculosis PB1/+] Length = 256 Score = 158 bits (399), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 79/192 (41%), Positives = 121/192 (63%), Gaps = 6/192 (3%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 PI+++M+TCF RFIIV +ILR +G+ PPN V+ +AL +T VM P + + + Sbjct: 67 PIMMLMMTCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKIHQDAVI 126 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P ++IT + A+ R P +M T K L M +A S + + ++ Sbjct: 127 PFQQDEITLSQALGRAEAPLKNYMLAQTSTKSLDQMMAIAQVSG------EPQQQDLSVV 180 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 P++++SEL+ +F++GF+I +PFL+ID+IVA+I+MAMGMMML P +SLPFK++ FVL D Sbjct: 181 TPAYVLSELKTAFQMGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCD 240 Query: 233 GWSLLVENLVKS 244 GW+L+V L S Sbjct: 241 GWTLMVGTLTAS 252 >gi|22127344|ref|NP_670767.1| flagellar biosynthesis protein FliP [Yersinia pestis KIM 10] gi|45442780|ref|NP_994319.1| flagellar biosynthesis protein FliP [Yersinia pestis biovar Microtus str. 91001] gi|51597653|ref|YP_071844.1| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis IP 32953] gi|108809075|ref|YP_652991.1| flagellar biosynthesis protein FliP [Yersinia pestis Antiqua] gi|108810732|ref|YP_646499.1| flagellar biosynthesis protein FliP [Yersinia pestis Nepal516] gi|145597801|ref|YP_001161877.1| flagellar biosynthesis protein FliP [Yersinia pestis Pestoides F] gi|150260265|ref|ZP_01916993.1| lateral flagellar export and assembly protein [Yersinia pestis CA88-4125] gi|162418133|ref|YP_001604861.1| flagellar biosynthesis protein FliP [Yersinia pestis Angola] gi|165925078|ref|ZP_02220910.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Orientalis str. F1991016] gi|165939035|ref|ZP_02227587.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Orientalis str. IP275] gi|166008695|ref|ZP_02229593.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua str. E1979001] gi|166211840|ref|ZP_02237875.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua str. B42003004] gi|167399704|ref|ZP_02305228.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418889|ref|ZP_02310642.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425117|ref|ZP_02316870.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466357|ref|ZP_02331061.1| flagellar biosynthetic protein FliP [Yersinia pestis FV-1] gi|170022955|ref|YP_001719460.1| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis YPIII] gi|218927896|ref|YP_002345771.1| flagellar biosynthesis protein FliP [Yersinia pestis CO92] gi|229837392|ref|ZP_04457555.1| Flagellar biosynthesis protein fliP [Yersinia pestis Pestoides A] gi|229840605|ref|ZP_04460764.1| Flagellar biosynthesis protein fliP [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842844|ref|ZP_04462996.1| Flagellar biosynthesis protein fliP [Yersinia pestis biovar Orientalis str. India 195] gi|229900929|ref|ZP_04516053.1| Flagellar biosynthesis protein fliP [Yersinia pestis Nepal516] gi|270487690|ref|ZP_06204764.1| flagellar biosynthetic protein FliP [Yersinia pestis KIM D27] gi|294502773|ref|YP_003566835.1| putative flagellar assembly protein [Yersinia pestis Z176003] gi|21960427|gb|AAM87018.1|AE013950_3 flagellar biosynthesis protein [Yersinia pestis KIM 10] gi|45437646|gb|AAS63196.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Microtus str. 91001] gi|51590935|emb|CAH22591.1| Putative flagellar assembly/export protein, fliP [Yersinia pseudotuberculosis IP 32953] gi|108774380|gb|ABG16899.1| flagellar assembly protein [Yersinia pestis Nepal516] gi|108780988|gb|ABG15046.1| putative flagellar assembly protein [Yersinia pestis Antiqua] gi|115346507|emb|CAL19383.1| putative flagellar assembly protein [Yersinia pestis CO92] gi|145209497|gb|ABP38904.1| flagellar assembly protein [Yersinia pestis Pestoides F] gi|149289673|gb|EDM39750.1| lateral flagellar export and assembly protein [Yersinia pestis CA88-4125] gi|162350948|gb|ABX84896.1| flagellar biosynthetic protein FliP [Yersinia pestis Angola] gi|165912991|gb|EDR31616.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Orientalis str. IP275] gi|165923278|gb|EDR40429.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Orientalis str. F1991016] gi|165992034|gb|EDR44335.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua str. E1979001] gi|166206586|gb|EDR51066.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua str. B42003004] gi|166962883|gb|EDR58904.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167052208|gb|EDR63616.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055880|gb|EDR65661.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749489|gb|ACA67007.1| flagellar biosynthetic protein FliP [Yersinia pseudotuberculosis YPIII] gi|229682268|gb|EEO78360.1| Flagellar biosynthesis protein fliP [Yersinia pestis Nepal516] gi|229690111|gb|EEO82168.1| Flagellar biosynthesis protein fliP [Yersinia pestis biovar Orientalis str. India 195] gi|229696971|gb|EEO87018.1| Flagellar biosynthesis protein fliP [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705515|gb|EEO91525.1| Flagellar biosynthesis protein fliP [Yersinia pestis Pestoides A] gi|262360805|gb|ACY57526.1| putative flagellar assembly protein [Yersinia pestis D106004] gi|262364750|gb|ACY61307.1| putative flagellar assembly protein [Yersinia pestis D182038] gi|270336194|gb|EFA46971.1| flagellar biosynthetic protein FliP [Yersinia pestis KIM D27] gi|294353232|gb|ADE63573.1| putative flagellar assembly protein [Yersinia pestis Z176003] gi|320016727|gb|ADW00299.1| Flagellar biosynthesis protein fliP [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 256 Score = 158 bits (399), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 79/192 (41%), Positives = 121/192 (63%), Gaps = 6/192 (3%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 PI+++M+TCF RFIIV +ILR +G+ PPN V+ +AL +T VM P + + + Sbjct: 67 PIMMLMMTCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKIHQDAVI 126 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P ++IT + A+ R P +M T K L M +A S + + ++ Sbjct: 127 PFQQDEITLSQALGRAEAPLKNYMLAQTSTKSLDQMMAIAQVSG------EPQQQDLSVV 180 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 P++++SEL+ +F++GF+I +PFL+ID+IVA+I+MAMGMMML P +SLPFK++ FVL D Sbjct: 181 TPAYVLSELKTAFQMGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCD 240 Query: 233 GWSLLVENLVKS 244 GW+L+V L S Sbjct: 241 GWTLMVGTLTAS 252 >gi|325567519|ref|ZP_08144186.1| flagellar biosynthetic protein FliP [Enterococcus casseliflavus ATCC 12755] gi|325158952|gb|EGC71098.1| flagellar biosynthetic protein FliP [Enterococcus casseliflavus ATCC 12755] Length = 254 Score = 158 bits (399), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 103/239 (43%), Positives = 155/239 (64%), Gaps = 8/239 (3%) Query: 11 LVTPELVFAKSSLHDVM----NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66 L+ P+ FA + DV N+ ++ + S+ + TF + T+LS+ P+LLIM+T F R I Sbjct: 19 LMLPQTAFALDT-EDVSSTINNLLSNGNGSSDTINTFLLLTLLSLLPVLLIMMTSFTRII 77 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 +V S +R+ +G PPN V+I LALF+TF++M P + I+P +I++ A Sbjct: 78 MVLSFVRSSLGTQQNPPNQVLIGLALFLTFFIMKPVYTDVYQQAIEPFDRQEISQAEAFD 137 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 R + FM TREKD++LF A + +D + +++P+F+ISELR +F Sbjct: 138 RSEKRIKAFMMVQTREKDIALF---AEADGETEKYHSSDDVPLTVMVPAFIISELRTAFS 194 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGFLI +PFLIID++V++I+M+MGMMML P ISLPFK++ FVL+DGW L+VE+L+KSF Sbjct: 195 IGFLIFIPFLIIDLVVSSILMSMGMMMLSPIMISLPFKILLFVLVDGWYLIVESLIKSF 253 >gi|192359973|ref|YP_001982204.1| flagellar biosynthesis protein FliP [Cellvibrio japonicus Ueda107] gi|190686138|gb|ACE83816.1| Flagellar biosynthetic protein fliP [Cellvibrio japonicus Ueda107] Length = 279 Score = 158 bits (399), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 94/209 (44%), Positives = 141/209 (67%), Gaps = 4/209 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 T ++ + T LS P +L+M+T F R IIVFSILR +G+ P N ++I LALF+T Sbjct: 73 TVTLQILALMTALSFLPAILMMMTSFTRIIIVFSILRQALGLQQSPSNQILIGLALFLTL 132 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 ++M P D++ +QP +N QI+ A+ + A PF FM TRE D+ LF+ +A Sbjct: 133 FIMKPVFDQANHDALQPYINGQISAQEALAKTAAPFHRFMLAQTRESDILLFVGIA---- 188 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 ++ I + I + IL P+F+ISEL+ +F+IGF+I +PFLIID++V++++MAMGMMML P Sbjct: 189 KHPPIATPEDIPFTILAPAFIISELKTAFQIGFIIFIPFLIIDIVVSSVLMAMGMMMLSP 248 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLPFK++ FVL+DGW+++V L S+ Sbjct: 249 LIISLPFKIMLFVLVDGWAMIVGTLAASY 277 >gi|54307253|ref|YP_128273.1| flagellar biosynthesis protein FliP [Photobacterium profundum SS9] gi|46911673|emb|CAG18471.1| Putative flagellar assembly protein [Photobacterium profundum SS9] Length = 242 Score = 157 bits (398), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 81/206 (39%), Positives = 129/206 (62%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ F + T L+ P +L+M T F R IIV ILR MG+ PPN V++ +AL ++ ++M Sbjct: 40 LQIFLLMTALAFLPAMLLMTTSFTRIIIVLGILRQAMGLQQSPPNRVLVGIALTLSLFIM 99 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P + + + P ++T A + +P FM TRE DL + +A + Sbjct: 100 RPVIYDIHDNAVVPYQKGEMTMFEAAKVAEQPLRQFMLQQTRETDLEQILRIADEPTPD- 158 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 D +++ +++P+F++SEL+ +F+IGF++ +PFLIIDM+VA+++MAMGMMML P I Sbjct: 159 ---NVDDLDFLLVMPAFILSELKTAFQIGFMLFIPFLIIDMVVASVLMAMGMMMLSPLII 215 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FV++DGWS+ V L SF Sbjct: 216 SLPFKLMVFVMVDGWSMTVGTLSASF 241 >gi|257866390|ref|ZP_05646043.1| flagellar biosynthesis protein P [Enterococcus casseliflavus EC30] gi|257871301|ref|ZP_05650954.1| flagellar biosynthesis protein P [Enterococcus gallinarum EG2] gi|257873094|ref|ZP_05652747.1| flagellar biosynthesis protein P [Enterococcus casseliflavus EC10] gi|257876003|ref|ZP_05655656.1| flagellar biosynthesis protein P [Enterococcus casseliflavus EC20] gi|257800348|gb|EEV29376.1| flagellar biosynthesis protein P [Enterococcus casseliflavus EC30] gi|257805465|gb|EEV34287.1| flagellar biosynthesis protein P [Enterococcus gallinarum EG2] gi|257807258|gb|EEV36080.1| flagellar biosynthesis protein P [Enterococcus casseliflavus EC10] gi|257810169|gb|EEV38989.1| flagellar biosynthesis protein P [Enterococcus casseliflavus EC20] Length = 271 Score = 157 bits (398), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 103/239 (43%), Positives = 155/239 (64%), Gaps = 8/239 (3%) Query: 11 LVTPELVFAKSSLHDVM----NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66 L+ P+ FA + DV N+ ++ + S+ + TF + T+LS+ P+LLIM+T F R I Sbjct: 36 LMLPQTAFALDT-EDVSSTINNLLSNGNGSSDTINTFLLLTLLSLLPVLLIMMTSFTRII 94 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 +V S +R+ +G PPN V+I LALF+TF++M P + I+P +I++ A Sbjct: 95 MVLSFVRSSLGTQQNPPNQVLIGLALFLTFFIMKPVYTDVYQQAIEPFDRQEISQAEAFD 154 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 R + FM TREKD++LF A + +D + +++P+F+ISELR +F Sbjct: 155 RSEKRIKAFMMVQTREKDIALF---AEADGETEKYHSSDDVPLTVMVPAFIISELRTAFS 211 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGFLI +PFLIID++V++I+M+MGMMML P ISLPFK++ FVL+DGW L+VE+L+KSF Sbjct: 212 IGFLIFIPFLIIDLVVSSILMSMGMMMLSPIMISLPFKILLFVLVDGWYLIVESLIKSF 270 >gi|288942627|ref|YP_003444867.1| flagellar biosynthetic protein FliP [Allochromatium vinosum DSM 180] gi|288897999|gb|ADC63835.1| flagellar biosynthetic protein FliP [Allochromatium vinosum DSM 180] Length = 249 Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 106/249 (42%), Positives = 153/249 (61%), Gaps = 9/249 (3%) Query: 1 MIRYCFFALFLVTPELVFAK-SSLH--DVMNIPADLSISTWIVRTFGIFTILSIAPILLI 57 + R+ L+ P LV A+ L+ V P + + ++ I T++++ P LI Sbjct: 4 LARWGLVLAGLLAPGLVLAQIGGLNAVTVTTAPDGGQVYSVTLQILIIMTLMTLLPSALI 63 Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 M+T F R IIV ILR G+G P N +++ LALF+T +VMSP + IQP M Sbjct: 64 MMTSFTRIIIVLGILRQGLGTTQTPSNQILLGLALFLTLFVMSPIFQEIYDTAIQPYMEE 123 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYRILIPSF 176 Q+ A+ + +P FM TRE DL+LF + R D ++ D I +LIPSF Sbjct: 124 QLGTEEALAKAVKPLRTFMLAQTRESDLALF-----AGIRGIDGFESPDDIPLTLLIPSF 178 Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236 +ISEL+ +F+IGFLI++PFLIID++VA+++M+MGMMML P ISLPFK++ FVL+DGWSL Sbjct: 179 VISELKTAFQIGFLILIPFLIIDLVVASVLMSMGMMMLSPLIISLPFKLMLFVLVDGWSL 238 Query: 237 LVENLVKSF 245 L+ L +SF Sbjct: 239 LLGTLARSF 247 >gi|119503675|ref|ZP_01625758.1| flagellar biosynthetic protein [marine gamma proteobacterium HTCC2080] gi|119460737|gb|EAW41829.1| flagellar biosynthetic protein [marine gamma proteobacterium HTCC2080] Length = 248 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 82/193 (42%), Positives = 124/193 (64%), Gaps = 4/193 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +LI +T F R +IV +ILR MG P N +I+ L+LF++ ++M+P D + ++ Sbjct: 58 PAMLITMTSFTRVLIVLAILRQAMGTAQTPSNQIILGLSLFLSLFIMAPVFDVAWTTALK 117 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P ++ A++ PF FM TR+ DL++F +M D + +L Sbjct: 118 PFLDGGTDFEGALEAAKIPFREFMFTQTRDSDLTMFAEMGGYGA----FASQDDVPMFVL 173 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 +PSF++SEL+ +F+IGFL+ +PFL+ID++VA I+MAMGMMML P ISLPFK++ FVLID Sbjct: 174 LPSFLVSELKTAFQIGFLLFVPFLVIDLVVAAILMAMGMMMLSPIIISLPFKLMLFVLID 233 Query: 233 GWSLLVENLVKSF 245 GW+L+ LV+SF Sbjct: 234 GWALVTSTLVRSF 246 >gi|197122898|ref|YP_002134849.1| flagellar biosynthesis protein FliP [Anaeromyxobacter sp. K] gi|196172747|gb|ACG73720.1| flagellar biosynthetic protein FliP [Anaeromyxobacter sp. K] Length = 236 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 87/206 (42%), Positives = 132/206 (64%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+ F + T LS A LL+ VT F R +IV S LR +G VPPN V+I LAL ++F+VM Sbjct: 34 VKLFLVLTALSFATALLVSVTSFTRIVIVLSFLRQALGTPQVPPNQVLIGLALVLSFFVM 93 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SPT R + P ++++I + A++R + P FM TR++DL+LF +++ + + Sbjct: 94 SPTATRVYADALGPYLDDRIGQAEALERASGPVREFMLRQTRDQDLALFYEISATPRPAS 153 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 D I I +P+FMISEL +F +G + +P L++D++V+ I+M+MGMMM+PPT I Sbjct: 154 ----GDAIPMSIAVPAFMISELTTAFRMGLFLYVPLLLVDLLVSAILMSMGMMMVPPTLI 209 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 +LP K+ FV+ DGW L+V L +SF Sbjct: 210 ALPVKIGLFVMADGWRLVVGALARSF 235 >gi|157147125|ref|YP_001454444.1| flagellar biosynthesis protein FliP [Citrobacter koseri ATCC BAA-895] gi|157084330|gb|ABV14008.1| hypothetical protein CKO_02902 [Citrobacter koseri ATCC BAA-895] Length = 250 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 81/194 (41%), Positives = 120/194 (61%), Gaps = 10/194 (5%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 PI+++M+TCF RFIIV +ILR +G+ PPN ++ +AL +T VM P I Sbjct: 61 PIMVLMMTCFTRFIIVLAILRQALGLQQSPPNKILTGIALALTLLVMRPVWTTIYTDAID 120 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA--HSSHRNTDITKNDHIEYR 170 P ++IT A+ + P +M T K ++ M +A R D+T Sbjct: 121 PFQKDEITLKQALAKAEVPLKNYMLAQTNNKAMAQMMSIAGIEGDAREQDLT-------- 172 Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230 I+ P++++SEL+ +F+IGF+I +PFL+ID+IVA+I+MAMGMMML P +SLPFK++ FVL Sbjct: 173 IVTPAYLLSELKTAFQIGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVL 232 Query: 231 IDGWSLLVENLVKS 244 DGW+L+V L S Sbjct: 233 CDGWTLIVGTLASS 246 >gi|116626498|ref|YP_828654.1| flagellar biosynthesis protein FliP [Candidatus Solibacter usitatus Ellin6076] gi|116229660|gb|ABJ88369.1| flagellar biosynthetic protein FliP [Candidatus Solibacter usitatus Ellin6076] Length = 245 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 74/201 (36%), Positives = 131/201 (65%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T++++ P ++ +T F R ++V LR +G S P N V+I LALF+ VM P + Sbjct: 48 LLTLMTLLPAAVMSITPFLRIVVVLHFLRQALGTQSTPSNQVLIGLALFLALLVMQPVIA 107 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 G +P+ Q++ A+++ + P F+ REKD+ LF++++H+ T Sbjct: 108 DMYHQGWEPMEAGQLSPERALEQGSVPLHNFLAKFAREKDIHLFVEISHAPAPRTP---- 163 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 +E ++LIP++++SEL+ F+IG ++ LPFLIID+++A++ +++GM+ LPP IS PFK Sbjct: 164 ADLEMKVLIPAYILSELKTGFQIGAVLFLPFLIIDLVIASVTLSIGMVQLPPVMISAPFK 223 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW+L+V +L++SF Sbjct: 224 ILLFVLVDGWNLVVGSLMRSF 244 >gi|258622510|ref|ZP_05717532.1| flagellar assembly protein [Vibrio mimicus VM573] gi|262173376|ref|ZP_06041053.1| flagellar biosynthesis protein FliP [Vibrio mimicus MB-451] gi|258585210|gb|EEW09937.1| flagellar assembly protein [Vibrio mimicus VM573] gi|261890734|gb|EEY36721.1| flagellar biosynthesis protein FliP [Vibrio mimicus MB-451] Length = 252 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 83/202 (41%), Positives = 125/202 (61%), Gaps = 6/202 (2%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T LS P ++M T F R I+V +ILR +G+ PPN V++ +AL +T +M P Sbjct: 55 LMTALSFLPAFILMATSFTRIIVVLAILRQALGLQQTPPNRVLVGIALTLTLLIMRPVWT 114 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + QP N +IT A +P FM T + L + +A N I +N Sbjct: 115 DIYKNAFQPYDNGEITLVQAFSVAEKPVREFMLAQTHQNSLEQMLRIA-----NEPIDQN 169 Query: 165 -DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 + I + I++P+F+ISEL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P ISLPF Sbjct: 170 VEDISFAIVLPAFVISELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPF 229 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K++ FVL+DGW++ V +L SF Sbjct: 230 KLVVFVLVDGWAMTVGSLSASF 251 >gi|260767960|ref|ZP_05876894.1| flagellar biosynthesis protein FliP [Vibrio furnissii CIP 102972] gi|260615990|gb|EEX41175.1| flagellar biosynthesis protein FliP [Vibrio furnissii CIP 102972] Length = 252 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 81/202 (40%), Positives = 124/202 (61%), Gaps = 6/202 (2%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T LS P ++M T F R I+V +ILR +G+ PPN V++ +AL ++ +M P Sbjct: 54 LMTALSFLPAFILMATSFTRIIVVLAILRQALGLQQSPPNRVLVGIALALSLLIMRPVWS 113 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 E +P QIT A +P FM T++ L + +A N + +N Sbjct: 114 EVYEHAFKPYDQGQITLMQAFSVAEKPVRNFMLAQTQQSSLEQMLRIA-----NEPLDQN 168 Query: 165 -DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 D I + +++P+F+ISEL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P ISLPF Sbjct: 169 VDDISFAVVLPAFVISELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPF 228 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K++ FVL+DGW++ V L SF Sbjct: 229 KLVVFVLVDGWAMTVGTLSASF 250 >gi|258624667|ref|ZP_05719602.1| flagellar assembly protein [Vibrio mimicus VM603] gi|258583059|gb|EEW07873.1| flagellar assembly protein [Vibrio mimicus VM603] Length = 256 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 83/202 (41%), Positives = 125/202 (61%), Gaps = 6/202 (2%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T LS P ++M T F R I+V +ILR +G+ PPN V++ +AL +T +M P Sbjct: 59 LMTALSFLPAFILMATSFTRIIVVLAILRQALGLQQTPPNRVLVGIALTLTLLIMRPVWT 118 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + QP N +IT A +P FM T + L + +A N I +N Sbjct: 119 DIYKNAFQPYDNGEITLVQAFSVAEKPVREFMLAQTHQNSLEQMLRIA-----NEPIDQN 173 Query: 165 -DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 + I + I++P+F+ISEL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P ISLPF Sbjct: 174 VEDISFAIVLPAFVISELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPF 233 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K++ FVL+DGW++ V +L SF Sbjct: 234 KLVVFVLVDGWAMTVGSLSASF 255 >gi|119899016|ref|YP_934229.1| flagellar biosynthesis protein FliP [Azoarcus sp. BH72] gi|119671429|emb|CAL95342.1| flagellar biosynthetic protein FliP [Azoarcus sp. BH72] Length = 258 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 91/206 (44%), Positives = 144/206 (69%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T + T+LS P L++M+T F R IIVFS+LR +G + PPN V++ LALF+TF++M Sbjct: 55 VQTLALLTLLSFIPALVLMMTSFTRIIIVFSLLRQAIGTQTSPPNQVLLGLALFLTFFIM 114 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +P D+ QP+ +I+ A++R P FM RE DLSLF +A ++ Sbjct: 115 APVADKVYLEAYQPMSEGRISFEQALERATVPVKAFMLKQVREPDLSLFTGLA----KHP 170 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + K + + R+++P+F+ SEL+ +F+IGF++ +PF+IIDM+VA+++M+MGMMM+ P + Sbjct: 171 PVEKAEDLPMRVVVPAFVTSELKTAFQIGFIVFIPFIIIDMVVASVLMSMGMMMMSPVIV 230 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW+LL+ +LV+SF Sbjct: 231 SLPFKIMLFVLVDGWTLLIGSLVQSF 256 >gi|310659027|ref|YP_003936748.1| flagellar export machinery protein [Clostridium sticklandii DSM 519] gi|308825805|emb|CBH21843.1| component of the flagellar export machinery [Clostridium sticklandii] Length = 262 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 91/238 (38%), Positives = 154/238 (64%), Gaps = 13/238 (5%) Query: 18 FAKSSLHDVMNI---------PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIV 68 +A++ ++ +I P DLS S + +FT+L++ P +LIM+T F R I++ Sbjct: 27 YAENLTTNIPDISLEINGSENPRDLSNS---IEMLMLFTVLTLLPSILIMMTSFTRVIVI 83 Query: 69 FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128 S L+ MG+ P+ VI+ L+LF+TF++M+P ++P +N+IT+ A + Sbjct: 84 LSFLKNAMGVQQAIPSQVIVGLSLFLTFFIMAPVGSEVYSEALRPYFDNEITQEEAFETA 143 Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSH-RNTDITKNDHIEYRILIPSFMISELRRSFEI 187 P FM TREKD+ LFMD++ + N++ ++I ++IP+F+ISEL+ F++ Sbjct: 144 MVPVREFMMKQTREKDIKLFMDLSKNEELANSEDLVLENIPNTVIIPAFIISELKTGFQV 203 Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GFL+ +PF++IDM+VA+ +M+MGMMMLPP ISLPFK++ FVL+DGW +++++++ F Sbjct: 204 GFLLFIPFIVIDMVVASTLMSMGMMMLPPMMISLPFKILLFVLVDGWDMVIKSIIVGF 261 >gi|315179664|gb|ADT86578.1| flagellar biosynthesis protein FliP [Vibrio furnissii NCTC 11218] Length = 252 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 81/202 (40%), Positives = 124/202 (61%), Gaps = 6/202 (2%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T LS P ++M T F R I+V +ILR +G+ PPN V++ +AL ++ +M P Sbjct: 54 LMTALSFLPAFILMATSFTRIIVVLAILRQALGLQQSPPNRVLVGIALALSLLIMRPVWS 113 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 E +P QIT A +P FM T++ L + +A N + +N Sbjct: 114 EVYEHAFKPYDQGQITLMQAFSVAEKPVRNFMLAQTQQSSLEQMLRIA-----NEPLDQN 168 Query: 165 -DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 D I + +++P+F+ISEL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P ISLPF Sbjct: 169 VDDISFAVVLPAFVISELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPF 228 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K++ FVL+DGW++ V L SF Sbjct: 229 KLVVFVLVDGWAMTVGTLSASF 250 >gi|306820131|ref|ZP_07453779.1| flagellar biosynthetic protein FliP [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551909|gb|EFM39852.1| flagellar biosynthetic protein FliP [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 264 Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 84/200 (42%), Positives = 138/200 (69%) Query: 46 FTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDR 105 FT+LS+ P +LIM+TCF R +++ S L+ +G P+ V++ LALF+TF++M+P + Sbjct: 64 FTLLSVLPSILIMMTCFTRIVVILSFLKQAIGAQQTIPSQVMVGLALFLTFFIMAPVGKQ 123 Query: 106 SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165 + + G++P + QI + A++ V +P FM TR+ D+ LF++++ D + Sbjct: 124 AYDGGLKPYFDKQIKQEQAVENVMKPVREFMFKQTRQSDIKLFLELSKDEQLKKDNVTLE 183 Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225 +I +LIP+F ISEL+ F+IGFL+ +PF+IIDM+V++ +M+MGMMMLPP IS+PFK+ Sbjct: 184 NIPNSVLIPAFCISELKTGFQIGFLLFIPFIIIDMVVSSTLMSMGMMMLPPMMISMPFKL 243 Query: 226 IFFVLIDGWSLLVENLVKSF 245 + FVL+DGW L++ ++V F Sbjct: 244 LLFVLVDGWDLVIRSIVMGF 263 >gi|254444823|ref|ZP_05058299.1| flagellar biosynthetic protein FliP [Verrucomicrobiae bacterium DG1235] gi|198259131|gb|EDY83439.1| flagellar biosynthetic protein FliP [Verrucomicrobiae bacterium DG1235] Length = 257 Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 81/194 (41%), Positives = 131/194 (67%), Gaps = 5/194 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 P +++++T F R IIV +RT +G+ P N +I+ L+L +TF++M P L + + Sbjct: 67 GPSIVVLMTSFTRIIIVLGFVRTAIGVHQAPSNQIIVGLSLIITFFIMQPVLSNVNDNAL 126 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 QPLM +IT A + + P FM N TR +D+ F+D++ N T + R+ Sbjct: 127 QPLMAKEITTAQAFEAGSGPLREFMLNQTRLQDIEFFLDLS-----NYGPTTASELPMRV 181 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 ++P+F++SE+R +F++GFLI LPF+++D +V T +MAMGMMM+PP ISLPFK++ FVL+ Sbjct: 182 VVPAFVMSEIRTAFKMGFLIFLPFIMVDFLVGTTLMAMGMMMMPPVVISLPFKLLLFVLV 241 Query: 232 DGWSLLVENLVKSF 245 DGW+L++++LV+SF Sbjct: 242 DGWTLVIKSLVQSF 255 >gi|329889296|ref|ZP_08267639.1| hypothetical protein BDIM_09760 [Brevundimonas diminuta ATCC 11568] gi|328844597|gb|EGF94161.1| hypothetical protein BDIM_09760 [Brevundimonas diminuta ATCC 11568] Length = 219 Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 81/206 (39%), Positives = 129/206 (62%), Gaps = 10/206 (4%) Query: 48 ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107 +L++AP + +MVT F + ++V S+LR +G+ VPPN+V+ +AL +T YVM P R Sbjct: 17 LLALAPFVAVMVTSFTKIVVVLSLLRNALGLQQVPPNIVLNGMALILTLYVMFPVGQRMA 76 Query: 108 EMGIQPLMNNQITETTAI----QRVAEPFWVFMRNNTREKDLSLFMDMAH---SSHRNTD 160 E +++T + EP F+ ++ E++ + F+ A + + + Sbjct: 77 EATNHMPPTAALSDTQQLFAYADSAKEPLRDFLIKHSSERERAFFLRTAQRISTPEKRAE 136 Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220 IT D + +++P+F +SEL +F+IGFLI LPFLIID++V+ I++AMGMMML PT++S Sbjct: 137 ITARD---FLVVVPAFTVSELATAFQIGFLIFLPFLIIDLVVSNILLAMGMMMLSPTTVS 193 Query: 221 LPFKVIFFVLIDGWSLLVENLVKSFI 246 LPFK++ FVLIDGW L LV S++ Sbjct: 194 LPFKLLLFVLIDGWVKLSHGLVLSYV 219 >gi|269796382|ref|YP_003315837.1| flagellar biosynthetic protein FliP [Sanguibacter keddieii DSM 10542] gi|269098567|gb|ACZ23003.1| flagellar biosynthetic protein FliP [Sanguibacter keddieii DSM 10542] Length = 283 Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 91/210 (43%), Positives = 138/210 (65%), Gaps = 5/210 (2%) Query: 36 STWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMT 95 S+ IV GI T+LS+AP LL+M+T F + +V ++ R +G+ VPPN V+ LALF++ Sbjct: 78 SSSIVVLLGI-TLLSVAPSLLLMMTSFTKIFVVLALTRNALGLQGVPPNQVLAGLALFLS 136 Query: 96 FYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSS 155 ++M+P + + E+G+QP +N + A++ + P FM TRE+D++L A Sbjct: 137 LFIMAPIIGQVNELGVQPYVNGGLDFGAAVEAGSAPLREFMLGQTREEDIALMTRAADQP 196 Query: 156 HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215 + T + LIPSFM+SELR +F IGF+I +PFL+ID++V+ +M+MGMMMLP Sbjct: 197 NP----TDPSTVPMLTLIPSFMLSELRAAFIIGFVIFIPFLVIDLVVSASLMSMGMMMLP 252 Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 P ISLPFK++ FVL+DGW ++V LV S+ Sbjct: 253 PVMISLPFKILLFVLVDGWGMIVTALVGSY 282 >gi|28901397|ref|NP_801052.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus RIMD 2210633] gi|153835929|ref|ZP_01988596.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus AQ3810] gi|260362951|ref|ZP_05775820.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus K5030] gi|260880238|ref|ZP_05892593.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus AN-5034] gi|260895355|ref|ZP_05903851.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus Peru-466] gi|28809944|dbj|BAC62885.1| putative flagellar assembly protein [Vibrio parahaemolyticus RIMD 2210633] gi|149750683|gb|EDM61428.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus AQ3810] gi|308085562|gb|EFO35257.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus Peru-466] gi|308092077|gb|EFO41772.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus AN-5034] gi|308112304|gb|EFO49844.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus K5030] gi|328469331|gb|EGF40277.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus 10329] Length = 252 Score = 155 bits (391), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 80/201 (39%), Positives = 122/201 (60%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T LS P ++M T F R I+V +ILR +G+ PPN V++ +AL +T +M P Sbjct: 55 LMTALSFLPAFILMATSFTRIIVVLAILRQALGLQQSPPNRVLVGIALTLTLLIMRPVWT 114 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 E QP N +IT A +P FM T + L + +A+ K Sbjct: 115 DIYENAFQPYDNGEITLVQAFSVAEKPVRNFMLAQTHQSSLEQMLRIANEPLDQ----KV 170 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + I + +++P+F+ISEL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P +SLPFK Sbjct: 171 EDISFAVVLPAFVISELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIVSLPFK 230 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW++ V L SF Sbjct: 231 LVVFVLVDGWAMTVGTLSASF 251 >gi|260901180|ref|ZP_05909575.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus AQ4037] gi|308109389|gb|EFO46929.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus AQ4037] Length = 252 Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 80/201 (39%), Positives = 122/201 (60%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T LS P ++M T F R I+V +ILR +G+ PPN V++ +AL +T +M P Sbjct: 55 LMTALSFLPAFILMATSFTRIIVVLAILRQALGLQQSPPNRVLVGIALTLTLLIMRPVWT 114 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 E QP N +IT A +P FM T + L + +A+ K Sbjct: 115 DIYENAFQPYDNGEITLVQAFSVAEKPVRNFMLAQTHQSSLEQMLRIANEPLDQ----KL 170 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + I + +++P+F+ISEL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P +SLPFK Sbjct: 171 EDISFAVVLPAFVISELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIVSLPFK 230 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW++ V L SF Sbjct: 231 LVVFVLVDGWAMTVGTLSASF 251 >gi|91223205|ref|ZP_01258471.1| putative flagellar assembly protein [Vibrio alginolyticus 12G01] gi|269967106|ref|ZP_06181173.1| flagellar assembly protein [Vibrio alginolyticus 40B] gi|91192018|gb|EAS78281.1| putative flagellar assembly protein [Vibrio alginolyticus 12G01] gi|269828243|gb|EEZ82510.1| flagellar assembly protein [Vibrio alginolyticus 40B] Length = 252 Score = 155 bits (391), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 79/202 (39%), Positives = 124/202 (61%), Gaps = 6/202 (2%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T LS P ++M T F R ++V +ILR +G+ PPN V++ +AL +T +M P Sbjct: 55 LMTALSFLPAFILMATSFTRIVVVLAILRQALGLQQSPPNRVLVGIALALTLLIMRPVWS 114 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 E QP N +IT A +P FM T + L + +A N + +N Sbjct: 115 DIYENAFQPYDNGEITLIQAFSVAEKPVREFMLAQTHQSSLEQMLRIA-----NEPLDQN 169 Query: 165 -DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 + I + +++P+F+ISEL+ +F+IGF++ +PFL+ID++VA+++MAMGMMML P +SLPF Sbjct: 170 VEDISFAVVLPAFVISELKTAFQIGFMLFIPFLVIDLVVASVLMAMGMMMLSPLIVSLPF 229 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K++ FVL+DGW++ V L SF Sbjct: 230 KLVVFVLVDGWAMTVGTLSASF 251 >gi|225871936|ref|YP_002753390.1| flagellar biosynthetic protein FliP [Acidobacterium capsulatum ATCC 51196] gi|225794472|gb|ACO34562.1| flagellar biosynthetic protein FliP [Acidobacterium capsulatum ATCC 51196] Length = 228 Score = 154 bits (390), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 78/201 (38%), Positives = 122/201 (60%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T++++ P +LI +T R ++VF LR +G + P N V++ L L MT+++M P L Sbjct: 32 VLTLITVLPAILISITPMVRLLVVFHFLRQALGTQTAPSNQVLLGLGLMMTWFLMQPVLT 91 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + + ++P QI+ A++R P FM EKDL LF A +S T+ Sbjct: 92 QIDQQAVEPYRAGQISGMQALERATAPPKAFMLRYASEKDLELF---AAASMVKRPATRA 148 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D + +IP++M+SEL+ FEIG ++ LPFL++DM+VA I ++GM LPP IS P K Sbjct: 149 D-LPLSAVIPAYMLSELKAGFEIGAILFLPFLLVDMVVAAITTSIGMFQLPPVVISTPLK 207 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FV++DGW LL +L+KSF Sbjct: 208 ILLFVMVDGWHLLAASLLKSF 228 >gi|78485085|ref|YP_391010.1| flagellar biosynthesis protein FliP [Thiomicrospira crunogena XCL-2] gi|78363371|gb|ABB41336.1| flagellar biosynthetic protein FliP [Thiomicrospira crunogena XCL-2] Length = 252 Score = 154 bits (390), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 86/194 (44%), Positives = 127/194 (65%), Gaps = 5/194 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P LI +T F R ++V ++LR +G P N V+I LALF+T ++MSP LD+ + + Sbjct: 58 PAALIAMTSFLRIVVVLALLRQALGTMQTPSNQVLIGLALFLTLFIMSPVLDKIYDTAVS 117 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P + QI AI P FM TR DL +F +MA + +T + + +++L Sbjct: 118 PYLEEQIKFKEAIDVAKTPIHQFMIQQTRADDLGMFAEMA-----DIQLTDPESVPFKVL 172 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 IP++M SEL+ +F+IGF+I +PFLIID++VAT++M+MGMMML P ISLPFK++ FVLID Sbjct: 173 IPAYMTSELKTAFQIGFMIFIPFLIIDLVVATLLMSMGMMMLSPMIISLPFKIMLFVLID 232 Query: 233 GWSLLVENLVKSFI 246 GW+L++ L SF+ Sbjct: 233 GWALIMGTLANSFV 246 >gi|254228804|ref|ZP_04922227.1| flagellar biosynthetic protein FliP [Vibrio sp. Ex25] gi|262396477|ref|YP_003288330.1| flagellar biosynthesis protein FliP [Vibrio sp. Ex25] gi|151938751|gb|EDN57586.1| flagellar biosynthetic protein FliP [Vibrio sp. Ex25] gi|262340071|gb|ACY53865.1| flagellar biosynthesis protein FliP [Vibrio sp. Ex25] Length = 252 Score = 154 bits (390), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 79/201 (39%), Positives = 122/201 (60%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T LS P ++M T F R I+V +ILR +G+ PPN V++ +AL +T +M P Sbjct: 55 LMTALSFLPAFILMATSFTRIIVVLAILRQALGLQQSPPNRVLVGIALALTLLIMRPVWS 114 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 E QP N +IT A +P FM T + L + +A+ K Sbjct: 115 DIHENAFQPYDNGEITLIQAFSVAEKPVREFMLAQTHQSSLEQMLRIANEPLDQ----KV 170 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + I + +++P+F+ISEL+ +F+IGF++ +PFL+ID++VA+++MAMGMMML P +SLPFK Sbjct: 171 EDISFAVVLPAFVISELKTAFQIGFMLFIPFLVIDLVVASVLMAMGMMMLSPLIVSLPFK 230 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW++ V L SF Sbjct: 231 LVVFVLVDGWAMTVGTLSASF 251 >gi|149908778|ref|ZP_01897438.1| putative flagellar assembly protein [Moritella sp. PE36] gi|149808052|gb|EDM67993.1| putative flagellar assembly protein [Moritella sp. PE36] Length = 246 Score = 154 bits (390), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 78/193 (40%), Positives = 122/193 (63%), Gaps = 4/193 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +L+M+T F R ++V +ILR +G+ PPN V++ +AL +T +M P + E Sbjct: 56 PAMLLMLTSFTRIVVVLAILRQAIGLQQSPPNRVLVGIALTLTILIMRPVWTQIHEDAFL 115 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P + +T A+ + P FM TRE DL + + + +T D I + +L Sbjct: 116 PYDSGSMTLIEALGKAEIPLRTFMLKQTRETDLEQMLKIGN----EPPVTSVDDIPFVVL 171 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 +P+F++SEL+ +F+IGF++ LPFL+ID++VA+++MAMGMMML P ISLPFK++ FVL+D Sbjct: 172 MPAFVLSELKTAFQIGFMLFLPFLVIDLVVASVLMAMGMMMLSPLIISLPFKLMIFVLVD 231 Query: 233 GWSLLVENLVKSF 245 GW++ V L SF Sbjct: 232 GWAMTVGTLTASF 244 >gi|220917690|ref|YP_002492994.1| flagellar biosynthetic protein FliP [Anaeromyxobacter dehalogenans 2CP-1] gi|219955544|gb|ACL65928.1| flagellar biosynthetic protein FliP [Anaeromyxobacter dehalogenans 2CP-1] Length = 236 Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 86/206 (41%), Positives = 131/206 (63%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+ F + T LS A LL+ VT F R +IV S LR +G VPPN V+I LAL ++ +VM Sbjct: 34 VKLFLVLTALSFATALLVSVTSFTRIVIVLSFLRQALGTPQVPPNQVLIGLALVLSCFVM 93 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SPT R + P ++++I + A++R + P FM TR++DL+LF +++ + + Sbjct: 94 SPTATRVYGDALGPYLDDRIGQAEALERASGPVREFMLRQTRDQDLALFYEISATPRPAS 153 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 D I I +P+FMISEL +F +G + +P L++D++V+ I+M+MGMMM+PPT I Sbjct: 154 ----GDAIPMSIAVPAFMISELTTAFRMGLFLYVPLLLVDLLVSAILMSMGMMMVPPTLI 209 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 +LP K+ FV+ DGW L+V L +SF Sbjct: 210 ALPVKIGLFVMADGWRLVVGALARSF 235 >gi|86157788|ref|YP_464573.1| flagellar biosynthesis protein FliP [Anaeromyxobacter dehalogenans 2CP-C] gi|85774299|gb|ABC81136.1| flagellar biosynthetic protein FliP [Anaeromyxobacter dehalogenans 2CP-C] Length = 236 Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 85/206 (41%), Positives = 130/206 (63%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+ F + T LS A LL+ VT F R +IV S LR +G VPPN V++ LAL ++ +VM Sbjct: 34 VKLFLVLTALSFATALLVSVTSFTRIVIVLSFLRQALGTPQVPPNQVLVGLALVLSCFVM 93 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SPT R + P ++++I + A++R + P FM TR++DL+LF +++ + Sbjct: 94 SPTATRVYADALGPYLDDRIGQAEALERASGPVREFMLRQTRDQDLALFYEISATPRP-- 151 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 D I I +P+FMISEL +F +G + +P L++D++V+ I+M+MGMMM+PPT I Sbjct: 152 --AAGDAIPMSIAVPAFMISELTTAFRMGLFLYVPLLLVDLLVSAILMSMGMMMVPPTLI 209 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 +LP K+ FV+ DGW L+V L +SF Sbjct: 210 ALPVKIGLFVMADGWRLVVGALARSF 235 >gi|94500290|ref|ZP_01306823.1| Flagellar transport protein FliP [Oceanobacter sp. RED65] gi|94427589|gb|EAT12566.1| Flagellar transport protein FliP [Oceanobacter sp. RED65] Length = 251 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 87/206 (42%), Positives = 132/206 (64%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ I TIL++ P L+IM+T F R I+VF+ILR +G+ P N +++ L LF+T ++M Sbjct: 48 IQILAIMTILTVLPSLVIMMTSFTRIIVVFAILRQALGLQQTPSNQILLGLTLFLTLFIM 107 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P + E IQP + +I A+ P FM RE DL++F+ ++ + T Sbjct: 108 MPIFNVINETAIQPYLEEKILPKEALDLAIIPIKEFMLAQVRETDLNMFVRLSGETGIQT 167 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + HI LIP+F+ SEL+ +F+IGF+I +PFLIID++VA+I+MAMGMMML P I Sbjct: 168 PMDTPLHI----LIPAFITSELKTAFQIGFMIFIPFLIIDLVVASILMAMGMMMLSPIII 223 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW +++ L S+ Sbjct: 224 SLPFKIMLFVLVDGWVMIIGTLAASY 249 >gi|303326581|ref|ZP_07357024.1| flagellar biosynthetic protein FliP [Desulfovibrio sp. 3_1_syn3] gi|302864497|gb|EFL87428.1| flagellar biosynthetic protein FliP [Desulfovibrio sp. 3_1_syn3] Length = 225 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 89/203 (43%), Positives = 138/203 (67%), Gaps = 6/203 (2%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T+LS+AP +++ VT F R IIVFS LR MG+ +PP ++ SLA+FMT +M P Sbjct: 27 LLTVLSVAPAIMLTVTSFTRIIIVFSFLRQAMGVQQLPPTQILASLAIFMTVVIMFPVGK 86 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + + +QP +N QI A+ R P FM +TREKDLS+F + ++ KN Sbjct: 87 QINDQALQPYLNEQIDYKVALDRAQAPLRTFMFKHTREKDLSVFYAITQ-----MELPKN 141 Query: 165 -DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 + + +L +++ISEL+ +F IGFLI +PFL++DM+++++++AMGMMMLPP +S+PF Sbjct: 142 KEEVPTMLLAAAYVISELKTAFTIGFLIYIPFLVLDMVISSVLLAMGMMMLPPMMVSMPF 201 Query: 224 KVIFFVLIDGWSLLVENLVKSFI 246 K++ FV++DGW+LLV +LV SF+ Sbjct: 202 KLLLFVMVDGWNLLVGSLVNSFL 224 >gi|237653572|ref|YP_002889886.1| flagellar biosynthesis protein FliP [Thauera sp. MZ1T] gi|237624819|gb|ACR01509.1| flagellar biosynthetic protein FliP [Thauera sp. MZ1T] Length = 257 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 95/227 (41%), Positives = 150/227 (66%), Gaps = 6/227 (2%) Query: 21 SSLHDVMNIPADLSISTW--IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 +L + PA +T+ ++T + T+LS P L++M TCF R +IVFS+LR MG Sbjct: 33 QALPALTTSPAAGGGTTYSLTIQTLMLMTLLSFIPALVLMTTCFTRIVIVFSLLRQAMGT 92 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 + PPN V++ LALF+TF+VM+P +R P+ +I A++R + P FM Sbjct: 93 QTAPPNQVLLGLALFLTFFVMAPVGERVYTEAYLPMSEGRIQFDEALERASVPVKGFMLK 152 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 RE DL+LF +A + + K + + R++IP+F+ SEL+ +F+IGF++ +PF+II Sbjct: 153 QVREPDLALFAGLA----KLPPVDKAEDLPMRVVIPAFVTSELKTAFQIGFIVFIPFIII 208 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 DM+VA+++M+MGMMM+ P +SLPFK++ FVL+DGW+LL+ +LV+SF Sbjct: 209 DMVVASVLMSMGMMMMSPVIVSLPFKIMLFVLVDGWTLLIGSLVQSF 255 >gi|90415342|ref|ZP_01223276.1| Flagella transport protein FliP family protein [marine gamma proteobacterium HTCC2207] gi|90332665|gb|EAS47835.1| Flagella transport protein FliP family protein [marine gamma proteobacterium HTCC2207] Length = 256 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 83/185 (44%), Positives = 124/185 (67%), Gaps = 4/185 (2%) Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R IIVFS+LR +G PPN V++ LALF+T ++MSP L + I P QI+ Sbjct: 73 SFVRIIIVFSLLRQALGTAQTPPNQVLVGLALFLTLFIMSPVLTSVYDDAITPYFEEQIS 132 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 TA+ P FM N TRE D+ +F+++A NT++ + + + L+P+F+ SE Sbjct: 133 FETAVAAAEAPVRTFMLNQTRESDIGMFLEIAD----NTEVIEPADVPFLTLVPAFITSE 188 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +F IGFLI +PF+IID++VA+++M+MGMMML P IS+PFK++ FVL+DGW+L++ + Sbjct: 189 LKSAFSIGFLIYIPFVIIDLVVASVLMSMGMMMLSPMMISMPFKLMLFVLVDGWTLIMGS 248 Query: 241 LVKSF 245 L SF Sbjct: 249 LTASF 253 >gi|296125240|ref|YP_003632492.1| flagellar biosynthetic protein FliP [Brachyspira murdochii DSM 12563] gi|296017056|gb|ADG70293.1| flagellar biosynthetic protein FliP [Brachyspira murdochii DSM 12563] Length = 262 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 83/208 (39%), Positives = 132/208 (63%), Gaps = 7/208 (3%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + TILS++P ++IM T F R IV S ++ + + PP +I+ L+LF+TF++M PTL Sbjct: 54 LLTILSLSPSIIIMTTSFIRVSIVLSFVQRALSLQETPPRALIMGLSLFLTFFIMMPTLT 113 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE----KDLSLFMDMAHSSHRNTD 160 + +QP +N I R +P +FM N+ R K L LF+ ++ ++ R D Sbjct: 114 QVNNEALQPYLNGSIGVNELYSRGIQPIRMFMFNSLRGENGMKSLDLFLSISDTNIRLRD 173 Query: 161 ITKND---HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 I D I +++P+F+I+EL +F++G + +PF++ID++VA+I+MAMGM+MLPP Sbjct: 174 IQTVDDLNRIPTIVVVPAFIINELTIAFKMGIYLFIPFIVIDLVVASILMAMGMIMLPPI 233 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLP K+I FV +DGW LL+ +V+SF Sbjct: 234 MISLPLKIILFVAVDGWKLLILQIVQSF 261 >gi|89072284|ref|ZP_01158863.1| putative flagellar assembly protein [Photobacterium sp. SKA34] gi|89051816|gb|EAR57268.1| putative flagellar assembly protein [Photobacterium sp. SKA34] Length = 263 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 84/201 (41%), Positives = 123/201 (61%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T LS P L+M T F R IIV SILR +G+ PPN +++ +AL +T +M P Sbjct: 66 LMTALSFIPAFLLMATSFTRIIIVLSILRQALGLQQSPPNRILVGIALSLTILIMRPVWT 125 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + P N IT A +P FM T + L M +A+ + D+ Sbjct: 126 DVYDNAFVPYDNGDITLLQAFDTAEKPVRDFMLKQTHQSALEQMMRIANEP-LDQDV--- 181 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 ++I + I++P+F+ISEL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P ISLPFK Sbjct: 182 ENISFAIVLPAFVISELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK 241 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 +I FVL DGW++ V +L SF Sbjct: 242 LIVFVLADGWTMTVGSLSASF 262 >gi|149184188|ref|ZP_01862506.1| flagellar biosynthetic protein FliP [Erythrobacter sp. SD-21] gi|148831508|gb|EDL49941.1| flagellar biosynthetic protein FliP [Erythrobacter sp. SD-21] Length = 255 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 80/188 (42%), Positives = 127/188 (67%), Gaps = 4/188 (2%) Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 M+T F R I+V +ILR +G+ PPN V+I ++LF++ ++M+PTL+R E I P Sbjct: 71 MMTSFTRIIVVLAILRQALGLQQSPPNQVLIGISLFLSLFIMTPTLERVNEAAIAPYSAG 130 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177 +I AI+R + F FM TRE DL +F D+A + + + IL+P+F+ Sbjct: 131 EIGAEVAIERAGDQFHAFMIRQTREYDLEMFADIAGAGQ----FASPQDVPFSILLPAFV 186 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 SEL+ +F+IGF++ LPFL+ID++V++++M++GMMM+ P +SLPFK++ FVL+DGW+LL Sbjct: 187 TSELKTAFQIGFMLFLPFLVIDLVVSSVLMSLGMMMMSPMMVSLPFKLLLFVLVDGWALL 246 Query: 238 VENLVKSF 245 + +L SF Sbjct: 247 MGSLAASF 254 >gi|269960157|ref|ZP_06174533.1| flagellar assembly protein [Vibrio harveyi 1DA3] gi|269835128|gb|EEZ89211.1| flagellar assembly protein [Vibrio harveyi 1DA3] Length = 255 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 81/202 (40%), Positives = 124/202 (61%), Gaps = 6/202 (2%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T LS P ++M T F R I+V +ILR +G+ PPN V++ +AL +T +M P Sbjct: 58 LMTALSFLPAFILMATSFTRIIVVLAILRQALGLQQSPPNRVLVGIALALTLLIMRPVWT 117 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + +P N +IT A +P FM T + L + +A N I +N Sbjct: 118 DIHDNAFKPYDNGEITLMQAFSVAEKPVRNFMLAQTHQSSLEQMLRIA-----NEPIDQN 172 Query: 165 -DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 + I + +++P+F+ISEL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P ISLPF Sbjct: 173 VEDISFAVVLPAFVISELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPF 232 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K++ FVL+DGW++ V L SF Sbjct: 233 KLVVFVLVDGWAMTVGTLSASF 254 >gi|300871793|ref|YP_003786666.1| flagellar biosynthesis protein FliP [Brachyspira pilosicoli 95/1000] gi|300689494|gb|ADK32165.1| flagellar biosynthesis protein, FliP [Brachyspira pilosicoli 95/1000] Length = 266 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 83/208 (39%), Positives = 132/208 (63%), Gaps = 7/208 (3%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + TILS++P ++IM T F R IV S ++ + + PP +I+ L+LF+TF++M PTL Sbjct: 58 LLTILSLSPSIIIMTTSFVRVSIVLSFVQRALSLQETPPRALIMGLSLFLTFFIMMPTLT 117 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE----KDLSLFMDMAHSSHRNTD 160 + +QP +N I R +P +FM N+ R K L LF+ ++ ++ R D Sbjct: 118 QINNEALQPYLNGTIGVNDLYSRGIQPIRMFMFNSLRGENGMKSLDLFLSISDTNVRLRD 177 Query: 161 ITKND---HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 I + I +++P+F+I+EL +F++G + +PF++ID++VA+I+MAMGM+MLPP Sbjct: 178 IQSVEDLAKIPTIVVVPAFIINELTIAFKMGIYLFVPFIVIDLVVASILMAMGMIMLPPI 237 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLP K+I FV +DGW LL+ LV+SF Sbjct: 238 MISLPLKIILFVAVDGWKLLILQLVQSF 265 >gi|320175462|gb|EFW50561.1| Flagellar biosynthesis protein FliP [Shigella dysenteriae CDC 74-1112] Length = 220 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 91/239 (38%), Positives = 135/239 (56%), Gaps = 34/239 (14%) Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66 L+LVTP L FA+ L + + P +W V+T T L+ P +L+M+T F R I Sbjct: 12 LWLVTP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A++ Sbjct: 69 IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 + A+P FM TRE DL LF +A++ + + + RIL+P+++ SEL Sbjct: 129 KGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSEL----- 179 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 180 --------------------MALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 218 >gi|90577375|ref|ZP_01233186.1| putative flagellar assembly protein [Vibrio angustum S14] gi|90440461|gb|EAS65641.1| putative flagellar assembly protein [Vibrio angustum S14] Length = 243 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 84/201 (41%), Positives = 122/201 (60%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T LS P L+M T F R IIV SILR +G+ PPN +++ +AL +T +M P Sbjct: 46 LMTALSFIPAFLLMATSFTRIIIVLSILRQALGLQQSPPNRILVGIALSLTILIMRPVWT 105 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + P N IT A +P FM T + L M +A+ + D+ Sbjct: 106 DVYDNAFVPYDNGDITLLQAFDTAEKPVRDFMLKQTHQSALEQMMRIANEP-LDQDV--- 161 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + I + I++P+F+ISEL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P ISLPFK Sbjct: 162 EDISFAIVLPAFVISELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK 221 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 +I FVL DGW++ V +L SF Sbjct: 222 LIVFVLADGWTMTVGSLSASF 242 >gi|153831725|ref|ZP_01984392.1| flagellar biosynthetic protein FliP [Vibrio harveyi HY01] gi|148872235|gb|EDL71052.1| flagellar biosynthetic protein FliP [Vibrio harveyi HY01] Length = 259 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 81/202 (40%), Positives = 124/202 (61%), Gaps = 6/202 (2%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T LS P ++M T F R I+V +ILR +G+ PPN V++ +AL +T +M P Sbjct: 62 LMTALSFLPAFILMATSFTRIIVVLAILRQALGLQQSPPNRVLVGIALALTLLIMRPVWT 121 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + +P N +IT A +P FM T + L + +A N I +N Sbjct: 122 DIHDNAFKPYDNGEITLMQAFSVAEKPVRNFMLAQTHQSSLEQMLRIA-----NEPIDQN 176 Query: 165 -DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 + I + +++P+F+ISEL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P ISLPF Sbjct: 177 VEDISFAVVLPAFVISELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPF 236 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K++ FVL+DGW++ V L SF Sbjct: 237 KLVVFVLVDGWAMTVGTLSASF 258 >gi|260779323|ref|ZP_05888215.1| flagellar biosynthesis protein FliP [Vibrio coralliilyticus ATCC BAA-450] gi|260605487|gb|EEX31782.1| flagellar biosynthesis protein FliP [Vibrio coralliilyticus ATCC BAA-450] Length = 252 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 79/201 (39%), Positives = 123/201 (61%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T LS P ++M T F R I+V +ILR +G+ PPN V++ +AL ++ +M P Sbjct: 55 LMTALSFLPAFILMATSFTRIIVVLAILRQALGLQQSPPNRVLVGIALALSLLIMRPVWT 114 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + QP N +IT A +P FM T++ L + +A+ T Sbjct: 115 DIYQNAFQPYDNGEITLMQAFSVAEKPVRNFMLAQTQQTSLEQMLRIANEPLD----TAL 170 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + I + +++P+F+ISEL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P ISLPFK Sbjct: 171 EDISFAVVLPAFVISELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK 230 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW++ V L SF Sbjct: 231 LVVFVLVDGWAMTVGTLSASF 251 >gi|296124299|ref|YP_003632077.1| flagellar biosynthetic protein FliP [Planctomyces limnophilus DSM 3776] gi|296016639|gb|ADG69878.1| flagellar biosynthetic protein FliP [Planctomyces limnophilus DSM 3776] Length = 339 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 89/215 (41%), Positives = 127/215 (59%), Gaps = 15/215 (6%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T+L++AP +L+M TCF RF+IV +LR +G +PPN VI SL LF+TF VM+P Sbjct: 120 LLTVLTLAPSILMMTTCFIRFVIVLGLLRQALGTQQLPPNQVITSLCLFLTFLVMAPIWQ 179 Query: 105 RSIEMGIQPLM-----NNQITETTAIQRVAEPFWVFMRNNTREKDLS----LFMDMAHSS 155 + E GI+P I E TA R P FM S +F+D Sbjct: 180 EAYEAGIRPYTAPRAGEAAIDEWTAFNRTLVPIRRFMAEQIDRTGSSDSVWMFIDFMRPP 239 Query: 156 HRN------TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 + + T + + L+P++++SEL+ SF I F I LPFLIIDM++++I+++M Sbjct: 240 QDSPALSTWKEPTTYEDVPLVALLPAYVLSELKVSFLIAFQIYLPFLIIDMVISSILISM 299 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 GMMMLPP ISLPFK++ FV+IDGW L V L++S Sbjct: 300 GMMMLPPVLISLPFKLLLFVMIDGWFLTVGMLLES 334 >gi|163800128|ref|ZP_02194029.1| putative flagellar assembly protein [Vibrio sp. AND4] gi|159175571|gb|EDP60365.1| putative flagellar assembly protein [Vibrio sp. AND4] Length = 255 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 81/202 (40%), Positives = 124/202 (61%), Gaps = 6/202 (2%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T LS P ++M T F R I+V +ILR +G+ PPN V++ +AL +T +M P Sbjct: 58 LMTALSFLPAFILMATSFTRIIVVLAILRQALGLQQSPPNRVLVGIALALTLLIMRPVWT 117 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + +P N +IT A +P FM T + L + +A N I +N Sbjct: 118 DIHDNAFKPYDNGEITLMQAFSVAEKPVRNFMLAQTHQSSLEQMLRIA-----NEPIDQN 172 Query: 165 -DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 + I + +++P+F+ISEL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P ISLPF Sbjct: 173 IEDISFAVVLPAFVISELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPF 232 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K++ FVL+DGW++ V L SF Sbjct: 233 KLVIFVLVDGWAMTVGTLSASF 254 >gi|330447937|ref|ZP_08311585.1| flagellar biosynthetic protein FliP [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492128|dbj|GAA06082.1| flagellar biosynthetic protein FliP [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 254 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 83/201 (41%), Positives = 122/201 (60%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T LS P L+M T F R IIV SILR +G+ PPN +++ +AL +T +M P Sbjct: 57 LMTALSFIPAFLLMATSFTRIIIVLSILRQALGLQQSPPNRILVGIALSLTILIMRPVWS 116 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + P N IT A +P FM T + L M +A+ + D+ Sbjct: 117 DVYDNAFVPYDNGDITLLQAFDTAEKPVRDFMLKQTHQSALEQMMRIANEP-LDQDV--- 172 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + I + I++P+F++SEL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P ISLPFK Sbjct: 173 EDISFAIVLPAFVVSELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK 232 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 +I FVL DGW++ V +L SF Sbjct: 233 LIVFVLADGWTMTVGSLSASF 253 >gi|520562|gb|AAA67717.1| FLIP [Sinorhizobium meliloti] Length = 136 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 70/136 (51%), Positives = 104/136 (76%), Gaps = 1/136 (0%) Query: 1 MIRYCFFALFLVT-PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 M+R+ F + ++ + A+S D++N P D S+++WI+RTFG+ T+LS+AP +LIMV Sbjct: 1 MLRFATFIIAMMAMSGIAGAQSFPADILNTPVDGSVASWIIRTFGLLTVLSVAPGILIMV 60 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T FPRF+I F+ILR+GMG+ + P N++++SLALFMTFYVM+PT DR+ GI PL+ N+I Sbjct: 61 TSFPRFVIAFAILRSGMGLATTPSNMIMVSLALFMTFYVMAPTFDRAWRDGIDPLLKNEI 120 Query: 120 TETTAIQRVAEPFWVF 135 +ET A+QR++EPF F Sbjct: 121 SETDAMQRMSEPFREF 136 >gi|156976196|ref|YP_001447102.1| flagellar biosynthesis protein FliP [Vibrio harveyi ATCC BAA-1116] gi|156527790|gb|ABU72875.1| hypothetical protein VIBHAR_04967 [Vibrio harveyi ATCC BAA-1116] Length = 255 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 81/202 (40%), Positives = 124/202 (61%), Gaps = 6/202 (2%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T LS P ++M T F R I+V +ILR +G+ PPN V++ +AL +T +M P Sbjct: 58 LMTALSFLPAFILMATSFTRIIVVLAILRQALGLQQSPPNRVLVGIALALTLLIMRPVWT 117 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + +P N +IT A +P FM T + L + +A N I +N Sbjct: 118 DIHDNAFKPYDNGEITLMQAFSVAEKPVRNFMLAQTHQSSLEQMLRIA-----NEPIDQN 172 Query: 165 -DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 + I + +++P+F+ISEL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P ISLPF Sbjct: 173 VEDISFAVVLPAFVISELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPF 232 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K++ FVL+DGW++ V L SF Sbjct: 233 KLVVFVLVDGWAMTVGTLSASF 254 >gi|323493116|ref|ZP_08098247.1| flagellar biosynthesis protein FliP [Vibrio brasiliensis LMG 20546] gi|323312587|gb|EGA65720.1| flagellar biosynthesis protein FliP [Vibrio brasiliensis LMG 20546] Length = 252 Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 79/201 (39%), Positives = 122/201 (60%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T LS P ++M T F R I+V +ILR +G+ PPN V++ +AL ++ +M P Sbjct: 55 LMTALSFLPAFILMATSFTRIIVVLAILRQALGLQQSPPNRVLVGIALALSLLIMRPVWT 114 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 QP N +IT A +P FM T++ L + +A+ T Sbjct: 115 DIYHNAFQPYDNGEITLMQAFSVAEKPVRNFMLAQTQQTSLEQMLRIANEPLD----TSV 170 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + I + +++P+F+ISEL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P ISLPFK Sbjct: 171 EDISFAVVLPAFVISELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK 230 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW++ V L SF Sbjct: 231 LVVFVLVDGWAMTVGTLSASF 251 >gi|225619290|ref|YP_002720516.1| flagellar biosynthesis protein FliP [Brachyspira hyodysenteriae WA1] gi|225214109|gb|ACN82843.1| flagellar biosynthesis protein FliP [Brachyspira hyodysenteriae WA1] Length = 257 Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 82/208 (39%), Positives = 132/208 (63%), Gaps = 7/208 (3%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + TILS++P ++IM T F R IV S ++ + + PP +I+ L+LF+TF++M PTL Sbjct: 49 LLTILSLSPSIIIMTTSFIRVSIVLSFVQRALSLQETPPRALIMGLSLFLTFFIMMPTLT 108 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE----KDLSLFMDMAHSSHRNTD 160 + +QP +N I R +P +FM N+ R K L LF+ ++++ R + Sbjct: 109 QVNNEALQPYLNGTIGVNELYSRGIQPIRMFMFNSLRGENGMKSLDLFLSISNTDIRLRE 168 Query: 161 ITKND---HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 I D I +++P+F+I+EL +F++G + +PF++ID++VA+I+MAMGM+MLPP Sbjct: 169 IQTVDDLNRIPTIVVVPAFIINELTIAFKMGIYLFIPFIVIDLVVASILMAMGMIMLPPI 228 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLP K+I FV +DGW LL+ +V+SF Sbjct: 229 MISLPLKIILFVAVDGWKLLILQIVQSF 256 >gi|182412233|ref|YP_001817299.1| flagellar biosynthetic protein FliP [Opitutus terrae PB90-1] gi|177839447|gb|ACB73699.1| flagellar biosynthetic protein FliP [Opitutus terrae PB90-1] Length = 302 Score = 151 bits (382), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 89/219 (40%), Positives = 144/219 (65%), Gaps = 8/219 (3%) Query: 28 NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87 N +S++ IV + T+LS+AP +++++T F R +IV +RT +G S P N ++ Sbjct: 91 NQQGQVSVAVQIVL---VMTLLSVAPSIVLLMTTFTRLVIVLGFVRTALGTPSAPSNQIV 147 Query: 88 ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147 I LALF+TF++M P DR + ++P ++ QIT T A+ P FM TR +D+ Sbjct: 148 IGLALFLTFFLMGPVFDRVNQEALRPYLDGQITATQALDHATVPLKEFMLKQTRTRDIEY 207 Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 F+ + T + R++IP+F+ISEL+ +F++GFL+ LPFL+ID +VA+++M Sbjct: 208 FLQLGGFGP-----TAVKDLPIRVVIPAFVISELQTAFQMGFLLFLPFLVIDFLVASVLM 262 Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 AMGMMM+PP +++LP K++ FVL+DGW L+V +LV+SF+ Sbjct: 263 AMGMMMMPPVTVALPLKLLLFVLVDGWHLVVRSLVQSFV 301 >gi|145297437|ref|YP_001140278.1| flagellar biosynthesis protein FliP [Aeromonas salmonicida subsp. salmonicida A449] gi|142850209|gb|ABO88530.1| lateral flagellar assembly protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 244 Score = 151 bits (382), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 80/185 (43%), Positives = 116/185 (62%), Gaps = 4/185 (2%) Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R IIV +ILR MG+ PPN V+I ++L +T ++ P + P N+I+ Sbjct: 60 SFTRIIIVLAILRQAMGLQQSPPNRVLIGISLILTIVIIRPVWTDMYQHAFIPYDQNEIS 119 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 + I R +P FM TRE DL M S T +TK D + + +L+P+F++SE Sbjct: 120 LSEGIARAEKPLRHFMLAQTREPDLE---QMLRISGEPTSLTK-DEVPFGVLLPAFVLSE 175 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L +F+IGF++ +PFL+ID++VA+++MAMGMMML P ISLPFK++ FVL+DGWS+ V Sbjct: 176 LNTAFQIGFMLFIPFLVIDLVVASVLMAMGMMMLSPLIISLPFKLMVFVLVDGWSMTVGT 235 Query: 241 LVKSF 245 L SF Sbjct: 236 LAASF 240 >gi|328948400|ref|YP_004365737.1| flagellar biosynthetic protein FliP [Treponema succinifaciens DSM 2489] gi|328448724|gb|AEB14440.1| flagellar biosynthetic protein FliP [Treponema succinifaciens DSM 2489] Length = 281 Score = 151 bits (382), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 80/192 (41%), Positives = 120/192 (62%), Gaps = 6/192 (3%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP + I++TCF RF IV ++ + + VPP V+ +A+FMT + M PT + Sbjct: 88 APSIFILMTCFLRFSIVLDFIKRALSLQQVPPTAVLNGIAIFMTLFCMWPTFRQIYTDSF 147 Query: 112 QPLMNNQITETTAIQRVAEPFWVFM-RNNTREKD-LSLFMDMAHSSHRNTDITKNDHIEY 169 QPL NN+IT T AI++ P +FM R +K+ + FM MA + Sbjct: 148 QPLSNNEITLTEAIEKAESPIRIFMFRQMGNDKNSIRTFMTMAGLGRP----ANASDVPT 203 Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229 +LIP++++ EL +F+IG L+ +PF++IDM+VA+I+M+MGMMMLPP IS+PFK++ FV Sbjct: 204 YVLIPAYILHELTVAFKIGILLYIPFIVIDMVVASILMSMGMMMLPPVQISMPFKLMLFV 263 Query: 230 LIDGWSLLVENL 241 L+DGW LL + L Sbjct: 264 LVDGWHLLTQQL 275 >gi|160902840|ref|YP_001568421.1| flagellar biosynthesis protein FliP [Petrotoga mobilis SJ95] gi|160360484|gb|ABX32098.1| flagellar biosynthetic protein FliP [Petrotoga mobilis SJ95] Length = 249 Score = 151 bits (382), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 82/204 (40%), Positives = 129/204 (63%), Gaps = 9/204 (4%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T+LS+AP L++ T F R ++V S LR MG PPN V+++LALF+T +M P + Sbjct: 49 TVLSLAPGFLMLFTSFTRIVVVLSFLRQAMGTRQAPPNQVMLALALFLTIMIMFPVFNGV 108 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRN----NTREKDLSLFMDMAHSSHRNTDIT 162 + I P N+I+ AIQ F FM + + E D+ + SS N +I Sbjct: 109 YQEAIIPYNQNEISYEEAIQISWLQFKDFMISEIVAHKNEDDIYML-----SSSMNVEID 163 Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222 + ++IL+P+F ISEL +F++ L+ LPF+I+DM+VA+I+++MGM+M+PP ISLP Sbjct: 164 NIEETPFQILVPAFAISELEIAFKMSILLYLPFIIVDMVVASILLSMGMIMIPPILISLP 223 Query: 223 FKVIFFVLIDGWSLLVENLVKSFI 246 FK++ FV+++GW L++ LV+SF+ Sbjct: 224 FKIMIFVMVNGWDLIIGGLVRSFV 247 >gi|332669209|ref|YP_004452217.1| flagellar biosynthetic protein FliP [Cellulomonas fimi ATCC 484] gi|332338247|gb|AEE44830.1| flagellar biosynthetic protein FliP [Cellulomonas fimi ATCC 484] Length = 240 Score = 151 bits (382), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 83/199 (41%), Positives = 132/199 (66%), Gaps = 4/199 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T+LS+AP L++M T F + +V S R +G+ VPPN V+ LALF++ +VM+P + Sbjct: 42 TLLSVAPALILMTTSFTKIFVVLSFTRNALGLQGVPPNQVLAGLALFLSLFVMAPVVSDI 101 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 +G+QP ++ +T + A+ + P FM TRE+DL+L A + + + Sbjct: 102 NSVGVQPYLDGSLTFSQAVDVGSGPLREFMLGQTREQDLALLTRAADQENPASP----ED 157 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 + + L+P+F++SELR +F +GF+I +PFL+ID++V+ +M+MGMMMLPP ISLPFK++ Sbjct: 158 VPFATLVPAFLLSELRSAFIMGFVIFVPFLVIDLVVSASLMSMGMMMLPPVMISLPFKIL 217 Query: 227 FFVLIDGWSLLVENLVKSF 245 FVL+DGW L+V +LV S+ Sbjct: 218 LFVLVDGWGLVVTSLVGSY 236 >gi|312884811|ref|ZP_07744503.1| flagellar biosynthesis protein FliP [Vibrio caribbenthicus ATCC BAA-2122] gi|309367463|gb|EFP95023.1| flagellar biosynthesis protein FliP [Vibrio caribbenthicus ATCC BAA-2122] Length = 251 Score = 151 bits (382), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 80/201 (39%), Positives = 121/201 (60%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T LS P ++M T F R I+V +ILR +G+ PPN V++ +AL +T +M P Sbjct: 54 LMTALSFLPAFILMATSFTRIIVVLAILRQALGLQQSPPNRVLVGIALALTLLIMRPVWS 113 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + P IT + A +P FM T++ L M +A+ T Sbjct: 114 DIHQNAFLPYEAGTITLSQAFSIAEKPVRQFMLRQTQQNSLEQMMRIANEPMD----TSL 169 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D I + +++P+F+ISEL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P ISLPFK Sbjct: 170 DDISFAVILPAFVISELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK 229 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW++ V L SF Sbjct: 230 LVVFVLVDGWAMTVGTLSASF 250 >gi|260768789|ref|ZP_05877723.1| flagellar biosynthesis protein FliP [Vibrio furnissii CIP 102972] gi|260616819|gb|EEX42004.1| flagellar biosynthesis protein FliP [Vibrio furnissii CIP 102972] gi|315180492|gb|ADT87406.1| flagellar biosynthesis protein P [Vibrio furnissii NCTC 11218] Length = 249 Score = 151 bits (382), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 86/199 (43%), Positives = 126/199 (63%), Gaps = 4/199 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T+LS P +IM TCF R IIV SILR +G+ PPN V++ LAL T +M P Sbjct: 51 TMLSFVPAFIIMCTCFTRIIIVLSILRQALGLQQSPPNQVLVGLALVFTLLIMRPVWTEI 110 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 QP M +IT + AI A+P +M T+ + L +A S D D Sbjct: 111 YADAYQPYMQEKITLSEAISTGAKPLHHYMLAQTQVQTLEQVTKIAGESLAEND----DD 166 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 I + IL+P++++SEL+ +F+IGF++ LPFL+ID++VA+++M+MGMMML P +SLPFK++ Sbjct: 167 IPFLILLPAYVLSELKIAFQIGFMVFLPFLVIDLVVASVLMSMGMMMLSPLIVSLPFKLL 226 Query: 227 FFVLIDGWSLLVENLVKSF 245 FV++DGW +LV +L +SF Sbjct: 227 VFVVVDGWGMLVSSLSQSF 245 >gi|148269377|ref|YP_001243837.1| flagellar biosynthesis protein FliP [Thermotoga petrophila RKU-1] gi|170288035|ref|YP_001738273.1| flagellar biosynthetic protein FliP [Thermotoga sp. RQ2] gi|281411926|ref|YP_003346005.1| flagellar biosynthetic protein FliP [Thermotoga naphthophila RKU-10] gi|147734921|gb|ABQ46261.1| flagellar biosynthetic protein FliP [Thermotoga petrophila RKU-1] gi|170175538|gb|ACB08590.1| flagellar biosynthetic protein FliP [Thermotoga sp. RQ2] gi|281373029|gb|ADA66591.1| flagellar biosynthetic protein FliP [Thermotoga naphthophila RKU-10] Length = 249 Score = 151 bits (382), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 84/205 (40%), Positives = 123/205 (60%), Gaps = 25/205 (12%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +L++ T F R I+VFS+ R +G PPN V+I LALF+TF +M P + I Sbjct: 56 PSILVLFTSFTRIIVVFSLFRNALGTRQTPPNQVMIGLALFLTFLIMQPVWNDIYNNAIT 115 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD----ITKNDHIE 168 P +N +I QRV NTR ++ FM +H N D + KN IE Sbjct: 116 PYLNKEIGYQEMFQRV----------NTRIRE---FMINELKNHHNEDNVFMLAKNSGIE 162 Query: 169 --------YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220 +LIP+F++ EL +F++G ++ +PF++IDMIVA+I++AMGM+M+PP +S Sbjct: 163 IAKIEEAPNAVLIPAFVLGELEVAFKMGVVLYVPFIVIDMIVASILLAMGMIMIPPVFVS 222 Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245 LPFK++ FV+ +GW LLVE L+KSF Sbjct: 223 LPFKILIFVMANGWDLLVEGLIKSF 247 >gi|74101640|gb|AAZ99730.1| FliPL [Aeromonas hydrophila] Length = 244 Score = 151 bits (381), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 80/185 (43%), Positives = 115/185 (62%), Gaps = 4/185 (2%) Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R IIV +ILR MG+ PPN V+I ++L +T +M P + P N+I+ Sbjct: 60 SFTRIIIVLAILRQAMGLQQSPPNRVLIGISLILTIVIMRPVWTDMYQHAFIPYDQNEIS 119 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 + I R +P FM TRE DL M S +TK D + + +L+P+F++SE Sbjct: 120 LSEGIARAEKPLRHFMLAQTREPDLE---QMLRISGEPISLTK-DEVPFGVLLPAFVLSE 175 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L +F+IGF++ +PFL+ID++VA+++MAMGMMML P ISLPFK++ FVL+DGWS+ V Sbjct: 176 LNTAFQIGFMLFIPFLVIDLVVASVLMAMGMMMLSPLIISLPFKLMVFVLVDGWSMTVGT 235 Query: 241 LVKSF 245 L SF Sbjct: 236 LAASF 240 >gi|303240272|ref|ZP_07326791.1| flagellar biosynthetic protein FliP [Acetivibrio cellulolyticus CD2] gi|302592182|gb|EFL61911.1| flagellar biosynthetic protein FliP [Acetivibrio cellulolyticus CD2] Length = 269 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 85/197 (43%), Positives = 133/197 (67%), Gaps = 5/197 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +L+M+T F R IIV S LR +G +PPN V+I LALF+T ++M+P + E Sbjct: 75 APSILMMMTSFTRVIIVLSFLRNALGTQQMPPNQVLIGLALFLTLFIMNPVITEINETAY 134 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND--HIEY 169 +P N +IT+ A++R ++ FM T +KDL+LF+ + S T I + + ++ Sbjct: 135 KPYSNKEITQQVALERSSKTIKTFMLKQTEKKDLALFVSL---SGTKTPIKEQEVPNLPL 191 Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229 +IP+F+ISEL +F++GFLI LPFL+ID++V++ +M+MGMMML P ISLPFK++ F+ Sbjct: 192 TTIIPAFLISELTTAFKMGFLIYLPFLVIDLVVSSTLMSMGMMMLSPVMISLPFKILLFI 251 Query: 230 LIDGWSLLVENLVKSFI 246 ++ GW+LL + +V SF+ Sbjct: 252 MVGGWNLLSQMIVNSFV 268 >gi|285018170|ref|YP_003375881.1| flagellar biosynthetic protein flip [Xanthomonas albilineans GPE PC73] gi|283473388|emb|CBA15893.1| probable flagellar biosynthetic protein flip [Xanthomonas albilineans] Length = 271 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 88/206 (42%), Positives = 128/206 (62%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++T + T +++ P +L+++T F R IV +LR MG G P N V++ LALF+T VM Sbjct: 67 LQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQAMGTGQTPSNQVLMGLALFLTALVM 126 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P +++ + G+ P +N QI TA +P FM RE DL F MA N Sbjct: 127 MPVWEKAWDHGMSPYLNGQIDFQTAWTLTTQPLRAFMLAQIRESDLMTFAGMAG----NG 182 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + D I + +L+ SF+ SEL+ +FEIGFLI +PF+IID++VA+++M+MGMMM+ P I Sbjct: 183 TYSSPDAIPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLVVASVLMSMGMMMMSPMLI 242 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 S PFK++ FVL+DGW L V L SF Sbjct: 243 SAPFKILLFVLVDGWVLTVGTLAASF 268 >gi|91791432|ref|YP_561083.1| flagellar biosynthesis protein FliP [Shewanella denitrificans OS217] gi|91713434|gb|ABE53360.1| flagellar biosynthetic protein FliP [Shewanella denitrificans OS217] Length = 229 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 80/200 (40%), Positives = 126/200 (63%), Gaps = 8/200 (4%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108 L++ P+ +I +T F R IIV S++R +G+ PPN V+I+L+LF+T + MS ++ Sbjct: 36 LTLIPVFVIAMTAFTRIIIVLSLVRQALGLQQTPPNSVLIALSLFLTIFAMSGVFEQINN 95 Query: 109 MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSS--HRNTDITKNDH 166 + P N I + A+ EP FM + T E +DMA + D++ Sbjct: 96 KALLPYANGSIELSAAVSNGIEPLKGFMLSQTDEVHFIRVLDMAKVPVPQSSADVSLTH- 154 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 L+P+FM+SEL +F++ FLI LPFL+ID++VA+ +MA+GM+M+PP ++SLP K++ Sbjct: 155 -----LVPAFMLSELTLAFKMAFLIFLPFLMIDLLVASCLMALGMIMVPPITVSLPLKIM 209 Query: 227 FFVLIDGWSLLVENLVKSFI 246 FVLIDGWSL+ +LV+SF+ Sbjct: 210 VFVLIDGWSLITGSLVQSFM 229 >gi|220903656|ref|YP_002478968.1| flagellar biosynthesis protein FliP [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867955|gb|ACL48290.1| flagellar biosynthetic protein FliP [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 225 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 89/203 (43%), Positives = 139/203 (68%), Gaps = 6/203 (2%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + TILS+AP +++ VT F R IIVFS LR MG+ +PP ++ SLA+FMT +M P Sbjct: 27 LLTILSVAPAIMLTVTSFTRIIIVFSFLRQAMGVQQLPPTQILASLAIFMTVVIMFPVGR 86 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + + +QP +N +I A+ + P FM +TREKDLS+F ++ N + KN Sbjct: 87 QINDDALQPYLNERIDYREALDKAQAPLRSFMFKHTREKDLSIFYSIS-----NMEAPKN 141 Query: 165 -DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 + + +L +++ISEL+ +F IGFLI +PFL++DM+++++++AMGMMMLPP +S+PF Sbjct: 142 KEEVPTMLLAAAYVISELKTAFTIGFLIYIPFLVLDMVISSVLLAMGMMMLPPMMVSMPF 201 Query: 224 KVIFFVLIDGWSLLVENLVKSFI 246 K++ FV++DGW+LLV +LV SF+ Sbjct: 202 KLLLFVMVDGWNLLVGSLVNSFL 224 >gi|218513456|ref|ZP_03510296.1| flagellar biosynthesis protein FliP [Rhizobium etli 8C-3] Length = 124 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 70/100 (70%), Positives = 87/100 (87%), Gaps = 2/100 (2%) Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195 M NTR+KDL+LF+D+A R +I +D I+YR+LIP+FMISE+RR FEIGFL++LPF Sbjct: 1 MAANTRDKDLALFVDLAR--ERGQNIQTSDPIDYRVLIPAFMISEIRRGFEIGFLVVLPF 58 Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235 L+ID+IVATI MAMGMMMLPPTSISLPFK++FFVLIDGW+ Sbjct: 59 LVIDLIVATITMAMGMMMLPPTSISLPFKILFFVLIDGWN 98 >gi|222100861|ref|YP_002535429.1| Flagellar biosynthesis protein FliP [Thermotoga neapolitana DSM 4359] gi|221573251|gb|ACM24063.1| Flagellar biosynthesis protein FliP [Thermotoga neapolitana DSM 4359] Length = 249 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 77/198 (38%), Positives = 124/198 (62%), Gaps = 9/198 (4%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +L++ T F R I+VFS+ R +G PPN V+I LALF+TF +M P + I Sbjct: 55 APSILVLFTSFTRIIVVFSLFRNALGTRQTPPNQVMIGLALFLTFLIMQPVWNDIYNNAI 114 Query: 112 QPLMNNQITETTAIQRVAEPFWVFM----RNNTREKDLSLFMDMAHSSHRNTDITKNDHI 167 P + +I QR+ FM +N+ E ++ + + + N +IT+ + Sbjct: 115 TPYLEREIGYQEMFQRINNRIREFMIKELKNHHNEDNVFML-----AQNANLEITRVEEA 169 Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227 +LIP+F++ EL +F++G ++ +PF++IDMIVA+I+++MGM+M+PP +SLPFK++ Sbjct: 170 PNSVLIPAFVLGELEIAFKMGVVLYVPFIVIDMIVASILLSMGMIMIPPVFVSLPFKILI 229 Query: 228 FVLIDGWSLLVENLVKSF 245 FV+ +GW LLVE L+KSF Sbjct: 230 FVMANGWDLLVEGLIKSF 247 >gi|320184486|gb|EFW59290.1| Flagellar biosynthesis protein FliP [Shigella flexneri CDC 796-83] gi|332096919|gb|EGJ01908.1| flagellar biosynthetic protein FliP [Shigella boydii 3594-74] Length = 222 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 84/208 (40%), Positives = 130/208 (62%), Gaps = 9/208 (4%) Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66 L+LVTP L FA+ L + + P +W V+T T L+ P +L+M+T F R I Sbjct: 12 LWLVTP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A++ Sbjct: 69 IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 + A+P FM TRE DL LF +A++ + + + RIL P+++ SEL+ +F+ Sbjct: 129 KGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILRPAYVTSELKTAFQ 184 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMML 214 IGF I +PFLIID+++A+++MA+GMMM+ Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMV 212 >gi|149178714|ref|ZP_01857297.1| flagellar biosynthetic protein fliP-putative transporter of flagellar protein [Planctomyces maris DSM 8797] gi|148842412|gb|EDL56792.1| flagellar biosynthetic protein fliP-putative transporter of flagellar protein [Planctomyces maris DSM 8797] Length = 330 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 83/207 (40%), Positives = 126/207 (60%), Gaps = 14/207 (6%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +LIM T F RF+IVF +LR +G +PPN V+ SL+LF+T VM+P +++ E GI Sbjct: 119 APSILIMTTSFIRFVIVFGLLRQALGTQQLPPNQVLTSLSLFLTIMVMAPIWEKAYEEGI 178 Query: 112 QPLMNNQ----ITETTAIQRVAEPFWVFMRNN---TREKD-LSLFMDMAH------SSHR 157 P N ++ A Q+ P FM + T D + +F+D + Sbjct: 179 VPYTNQTQQAPVSLEAAFQKTVAPLRKFMSDQIELTGNSDTVWMFLDYQQPLPGSPGAES 238 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 D + +L+P++M+SE++ +F IGF + LPF++IDM++++I+++MGMMMLPP Sbjct: 239 YQPPRDYDEVPLTVLLPAYMLSEVKTAFLIGFQLYLPFIVIDMVISSILISMGMMMLPPV 298 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKS 244 ISLPFK++ FVLIDGW L V L++S Sbjct: 299 LISLPFKILLFVLIDGWLLTVGMLLES 325 >gi|212637763|ref|YP_002314288.1| flagellar biosynthesis protein FliP [Shewanella piezotolerans WP3] gi|212559247|gb|ACJ31701.1| Flagellar transport protein FliP [Shewanella piezotolerans WP3] Length = 242 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 88/202 (43%), Positives = 127/202 (62%), Gaps = 4/202 (1%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 + T+LS P LL+M+T F R I+V +ILR +G+ PPN V+I +AL MT ++M P Sbjct: 44 ALMTVLSFLPALLMMLTSFTRIIVVLAILRQALGLQQSPPNKVLIGIALVMTIFIMRPVG 103 Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163 + P QI T A+ + P FM TRE DL + +A T Sbjct: 104 QAIYDEAFLPYDLGQIELTEAVVKAEVPLRKFMLAQTRETDLEQMLKIADEPTTLT---- 159 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 D I + +L+P+F++SEL+ +F+IGFL+ LPFL+ID++VA+++M+MGMMML P ISLPF Sbjct: 160 ADEIPFFVLMPAFVLSELKTAFQIGFLLFLPFLVIDLVVASVLMSMGMMMLSPLIISLPF 219 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K++ FVL+DGWS+ V LV S+ Sbjct: 220 KLMVFVLVDGWSMTVSTLVASY 241 >gi|149189860|ref|ZP_01868140.1| flagellar biosynthesis protein P [Vibrio shilonii AK1] gi|148836346|gb|EDL53303.1| flagellar biosynthesis protein P [Vibrio shilonii AK1] Length = 261 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 80/201 (39%), Positives = 121/201 (60%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T LS P ++M T F R I+V +ILR +G+ PPN V+I +AL ++ +M P Sbjct: 62 LMTALSFLPAFILMATSFTRIIVVLAILRQALGLQQSPPNRVLIGIALSLSILIMRPVWS 121 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 E P +IT A +P FM T+ L M ++ D +K Sbjct: 122 DVYEHAFVPYDQGEITLMQAFATAEKPVRNFMLAQTQRNSLE---QMLRIANEPVD-SKV 177 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + I + I++P+F+ISEL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P +SLPFK Sbjct: 178 EDISFAIVLPAFVISELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIVSLPFK 237 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW++ V L SF Sbjct: 238 LVVFVLVDGWAMTVGTLSASF 258 >gi|83647782|ref|YP_436217.1| type III secretion system protein [Hahella chejuensis KCTC 2396] gi|83635825|gb|ABC31792.1| Type III secretory pathway, component EscR [Hahella chejuensis KCTC 2396] Length = 215 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 78/206 (37%), Positives = 122/206 (59%), Gaps = 6/206 (2%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT- 102 G +LS+ P + IM T F + +VFS+LR +G+ +PPN+ + LA+ ++ Y+M+P Sbjct: 11 GTLVLLSLIPFIAIMTTSFIKLAVVFSLLRNALGIQQIPPNMALYGLAIVLSIYIMAPVG 70 Query: 103 ---LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 D E G + + E +P F+ ++ EK+ F++ A + Sbjct: 71 YQIADTVKEKGFDLSQSESLKELA--NSAIDPMSEFLTKHSSEKERGFFLESAETLWPKE 128 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + D +L+PSF ISEL+ +FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ P +I Sbjct: 129 YAARLDTNSMLVLVPSFTISELKSAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTI 188 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW+ L LV S+ Sbjct: 189 SLPFKLLLFVLLDGWTRLTHGLVLSY 214 >gi|15643461|ref|NP_228507.1| flagellar biosynthesis protein FliP [Thermotoga maritima MSB8] gi|4981221|gb|AAD35780.1|AE001741_13 flagellar biosynthesis protein FliP [Thermotoga maritima MSB8] Length = 249 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 83/205 (40%), Positives = 122/205 (59%), Gaps = 25/205 (12%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +L++ T F R I+VFS+ R +G PPN V+I LALF+TF +M P + I Sbjct: 56 PSILVLFTSFTRIIVVFSLFRNALGTRQTPPNQVMIGLALFLTFLIMQPVWNDIYNNAIT 115 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD----ITKNDHIE 168 P +N + QRV NTR ++ FM +H N D + KN IE Sbjct: 116 PYLNKETGYQEMFQRV----------NTRIRE---FMINELKNHHNEDNVFMLAKNSGIE 162 Query: 169 --------YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220 +LIP+F++ EL +F++G ++ +PF++IDMIVA+I++AMGM+M+PP +S Sbjct: 163 IAKIEEAPNAVLIPAFVLGELEVAFKMGVVLYVPFIVIDMIVASILLAMGMIMIPPVFVS 222 Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245 LPFK++ FV+ +GW LLVE L+KSF Sbjct: 223 LPFKILIFVMANGWDLLVEGLIKSF 247 >gi|108758905|ref|YP_633786.1| type III secretion system protein [Myxococcus xanthus DK 1622] gi|108462785|gb|ABF87970.1| type III secretion apparatus protein YscR/HrcR [Myxococcus xanthus DK 1622] Length = 218 Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 125/206 (60%), Gaps = 4/206 (1%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 G+ ++S+ P ++M+T F + +V S+ R+ MG PP +V+ LA +T ++M+P + Sbjct: 12 GMLAVMSLLPFAVLMLTSFSKIAVVLSLARSAMGTQQAPPTIVLTGLAAVLTGHIMAPVM 71 Query: 104 DRSIEMG----IQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +R + G + + +A RV+EP F+ + ++ + F+D+A Sbjct: 72 ERMYDAGQVAYAEVASGSGAEMLSAASRVSEPLRAFLIKHGSAEERARFVDLARELRPVE 131 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 ++ + I+IP+F+I+EL+ +F+IGFL+ LPFL++DM++A +++A+GM L P+ + Sbjct: 132 EMDAVRETDLFIVIPAFVITELKEAFQIGFLVFLPFLVLDMVIANVLLALGMQTLSPSQV 191 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FV +DGWSLL L+ + Sbjct: 192 SLPFKILLFVAVDGWSLLARGLILGY 217 >gi|225569962|ref|ZP_03778987.1| hypothetical protein CLOHYLEM_06057 [Clostridium hylemonae DSM 15053] gi|225161432|gb|EEG74051.1| hypothetical protein CLOHYLEM_06057 [Clostridium hylemonae DSM 15053] Length = 220 Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 137/222 (61%), Gaps = 7/222 (3%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIA---PILLIMVTCFPRFIIVFSILRTGMGMGSVPP 83 MN A ++I+ V T I ++++ P +++M+T F R II+ S R +G+ PP Sbjct: 1 MNTGALVNINGGQVPTLEILVMMTVVMLLPSIVVMMTSFVRIIIILSFTRNAIGVQQTPP 60 Query: 84 NLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREK 143 N+V++ +ALF+T ++M P + +P N +I + A+ R P FM T Sbjct: 61 NMVLVGIALFLTLFIMDPVIKDINTEAYEPYKNGEIAQEEALDRATVPMKKFMLKQTEVS 120 Query: 144 DLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVA 203 L+L++DMA + T + + R++IPSFM SEL+R F G L+ +PFL+ID+IV+ Sbjct: 121 TLNLYVDMAGIEEK----TAPEDLPMRVVIPSFMTSELKRGFMAGLLLFIPFLLIDIIVS 176 Query: 204 TIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 + +M+MGM+MLPP +I+LPFK++ FV ++GW LL ++V+SF Sbjct: 177 STLMSMGMIMLPPATIALPFKLLLFVTLNGWELLFSSIVQSF 218 >gi|115377840|ref|ZP_01465028.1| type III secretion apparatus protein, YscR/HrcR family [Stigmatella aurantiaca DW4/3-1] gi|310820307|ref|YP_003952665.1| type III secretion system inner membrane p family protein [Stigmatella aurantiaca DW4/3-1] gi|115365172|gb|EAU64219.1| type III secretion apparatus protein, YscR/HrcR family [Stigmatella aurantiaca DW4/3-1] gi|309393379|gb|ADO70838.1| Type III secretion system inner membrane P family protein [Stigmatella aurantiaca DW4/3-1] Length = 277 Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 76/203 (37%), Positives = 128/203 (63%), Gaps = 9/203 (4%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP---TLDRSIEM 109 P +L+MVT F + +V SI+R+ +G +PP VI LA+ +T Y+M+P + ++ ++ Sbjct: 75 PFMLMMVTSFVKISVVLSIVRSALGTQQIPPTQVITGLAVILTVYIMAPVGQEMYKAAKV 134 Query: 110 GI----QPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163 I L++++ T A R EP F+ + KD +LF +A + D Sbjct: 135 DIWAKGPSLLSSETVGTLLEAADRSKEPLRDFLVKKVKNKDRALFFHLAKKMRKAEDRKD 194 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 ++ I+IP+F++SEL+ +F+IGFL+ +PF++IDM+VA I++A+GM ML PT+IS+PF Sbjct: 195 IGDRDFMIIIPAFVVSELKEAFQIGFLLFVPFIVIDMVVANILLALGMHMLSPTTISMPF 254 Query: 224 KVIFFVLIDGWSLLVENLVKSFI 246 K++ FVL+DGW L+ + LV ++ Sbjct: 255 KLLLFVLVDGWYLIAKGLVVGYL 277 >gi|226225725|ref|YP_002759831.1| flagellar biosynthetic protein FliP [Gemmatimonas aurantiaca T-27] gi|226088916|dbj|BAH37361.1| flagellar biosynthetic protein FliP [Gemmatimonas aurantiaca T-27] Length = 255 Score = 149 bits (375), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 78/185 (42%), Positives = 115/185 (62%), Gaps = 4/185 (2%) Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R +IV L+ MG S PP ++ +AL +T +VM PTL I P ++ QIT Sbjct: 74 GFTRILIVLQFLKQAMGTQSAPPGALLAGMALLLTGFVMGPTLSEVNRTAITPWLDGQIT 133 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 + ++ +P FM TR+ D+ F+ ++ NT D + +L+ +F+ SE Sbjct: 134 QVEMMKTGVQPLRTFMLKQTRQSDVETFVKLSRMPQPNT----VDDVPLHVLMSAFVASE 189 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 LR +F+IGF I LPF+IID +VA+++M+MGM MLPP ISLPFK++ FVL+DGWSL + + Sbjct: 190 LRTAFQIGFAIYLPFIIIDAVVASVLMSMGMFMLPPAMISLPFKLLLFVLVDGWSLTITS 249 Query: 241 LVKSF 245 LV+SF Sbjct: 250 LVQSF 254 >gi|167626138|ref|YP_001676432.1| flagellar biosynthesis protein FliP [Shewanella halifaxensis HAW-EB4] gi|167356160|gb|ABZ78773.1| flagellar biosynthetic protein FliP [Shewanella halifaxensis HAW-EB4] Length = 242 Score = 148 bits (374), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 88/202 (43%), Positives = 126/202 (62%), Gaps = 4/202 (1%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 + T+LS P LL+M+T F R I+V +ILR +G+ PPN V+I +AL MT ++M P Sbjct: 44 ALMTVLSFLPALLMMLTSFTRIIVVLAILRQALGLQQSPPNKVLIGIALVMTIFIMRPVG 103 Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163 + P QI A+ R P FM TRE DL + +A T Sbjct: 104 QEIYDDAFLPYDMGQIELPEAVARGEVPLRQFMLAQTRETDLEQMLKIADEPITLT---- 159 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 D I + +L+P+F++SEL+ +F+IGFL+ LPFL+ID++VA+++M+MGMMML P ISLPF Sbjct: 160 ADEIPFFVLMPAFVLSELKTAFQIGFLLFLPFLVIDLVVASVLMSMGMMMLSPLIISLPF 219 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K++ FVL+DGWS+ V LV S+ Sbjct: 220 KLMVFVLVDGWSMTVSTLVASY 241 >gi|157959919|ref|YP_001499953.1| flagellar biosynthesis protein FliP [Shewanella pealeana ATCC 700345] gi|157844919|gb|ABV85418.1| flagellar biosynthetic protein FliP [Shewanella pealeana ATCC 700345] Length = 242 Score = 147 bits (372), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 85/202 (42%), Positives = 127/202 (62%), Gaps = 4/202 (1%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 + T+LS P +L+M+T F R I+V ILR +G+ PPN V+I +AL MT ++M P Sbjct: 44 ALMTVLSFLPAMLMMLTSFTRIIVVLGILRQALGLQQSPPNKVLIGIALVMTIFIMRPVG 103 Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163 + E P I A++R +P FM TRE DL + +A T Sbjct: 104 EEIYEKAFLPYDQGIIELPEAVERGEKPLRQFMLAQTRETDLEQMLKIADEPTTLT---- 159 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 + I + +L+P++++SEL+ +F+IGFL+ LPFL+ID++VA+++M+MGMMML P ISLPF Sbjct: 160 AEEIPFFVLMPAYVLSELKTAFQIGFLLFLPFLVIDLVVASVLMSMGMMMLSPLIISLPF 219 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K++ FVL+DGWS+ V LV S+ Sbjct: 220 KLMVFVLVDGWSMTVSTLVASY 241 >gi|22124444|ref|NP_667867.1| type III secretion system protein [Yersinia pestis KIM 10] gi|108810002|ref|YP_653918.1| type III secretion system protein [Yersinia pestis Antiqua] gi|108813557|ref|YP_649324.1| type III secretion system protein [Yersinia pestis Nepal516] gi|145600947|ref|YP_001165023.1| type III secretion system protein [Yersinia pestis Pestoides F] gi|161511452|ref|NP_991819.2| type III secretion system protein [Yersinia pestis biovar Microtus str. 91001] gi|161760592|ref|YP_068873.2| type III secretion system protein [Yersinia pseudotuberculosis IP 32953] gi|165936558|ref|ZP_02225126.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia pestis biovar Orientalis str. IP275] gi|170026115|ref|YP_001722620.1| type III secretion system protein [Yersinia pseudotuberculosis YPIII] gi|186893685|ref|YP_001870797.1| type III secretion system protein [Yersinia pseudotuberculosis PB1/+] gi|21957231|gb|AAM84118.1|AE013654_7 putative type III secretion system component [Yersinia pestis KIM 10] gi|108777205|gb|ABG19724.1| type III secretion apparatus protein [Yersinia pestis Nepal516] gi|108781915|gb|ABG15973.1| putative type III secretion apparatus protein [Yersinia pestis Antiqua] gi|145212643|gb|ABP42050.1| type III secretion apparatus protein [Yersinia pestis Pestoides F] gi|165915674|gb|EDR34283.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia pestis biovar Orientalis str. IP275] gi|169752649|gb|ACA70167.1| Yop virulence translocation R [Yersinia pseudotuberculosis YPIII] gi|186696711|gb|ACC87340.1| Yop virulence translocation R [Yersinia pseudotuberculosis PB1/+] Length = 236 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 81/203 (39%), Positives = 130/203 (64%), Gaps = 6/203 (2%) Query: 48 ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRS 106 +LS+ P+L++M T F + +VFS+LR +G+ VPPN+ I LAL +T ++M+P LD Sbjct: 36 MLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQ 95 Query: 107 IEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSS--HRNTDITK 163 + + L N+ I Q P+ F++ NT + ++ F D+ + R D K Sbjct: 96 ARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVK 155 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 D + IL+P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P ++SLPF Sbjct: 156 PDSL--LILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPF 213 Query: 224 KVIFFVLIDGWSLLVENLVKSFI 246 K++ FVL+DGWSL++ LV S++ Sbjct: 214 KLLVFVLVDGWSLVLGQLVGSYL 236 >gi|157363490|ref|YP_001470257.1| flagellar biosynthesis protein FliP [Thermotoga lettingae TMO] gi|157314094|gb|ABV33193.1| flagellar biosynthetic protein FliP [Thermotoga lettingae TMO] Length = 250 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 82/203 (40%), Positives = 126/203 (62%), Gaps = 5/203 (2%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 I T+L++AP +LI+ T F R I+VFS LR +G PP+ V+I LALF+TF++M P + Sbjct: 49 IITVLALAPSILILFTSFTRIIVVFSFLRNALGTRQTPPSQVLIGLALFLTFFIMQPVWN 108 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN--TREKDLSLFMDMAHSSHRNTDIT 162 + P M +I R+ FM + ++F+ +A S + D Sbjct: 109 DIYNDALTPYMEKEIGYEELFSRMIGRVRQFMLKELVDHHNEDNVFL-LASSVGKKFD-- 165 Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222 K + ILIP+F++ EL F++G L+ +PF++IDMIV++I++AMGM+M+PP ISLP Sbjct: 166 KIEDAPNSILIPAFVLGELEIGFKMGVLLYIPFIVIDMIVSSILLAMGMIMIPPVLISLP 225 Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245 FKV+ F++++GW LLV L+KSF Sbjct: 226 FKVLLFIVVNGWDLLVSGLIKSF 248 >gi|150260681|ref|ZP_01917409.1| putative type III secretion apparatus protein [Yersinia pestis CA88-4125] gi|153950632|ref|YP_001402768.1| type III secretion system protein [Yersinia pseudotuberculosis IP 31758] gi|162418478|ref|YP_001608228.1| type III secretion system protein [Yersinia pestis Angola] gi|165926714|ref|ZP_02222546.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia pestis biovar Orientalis str. F1991016] gi|166010511|ref|ZP_02231409.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia pestis biovar Antiqua str. E1979001] gi|166213909|ref|ZP_02239944.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia pestis biovar Antiqua str. B42003004] gi|167402211|ref|ZP_02307684.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419036|ref|ZP_02310789.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426164|ref|ZP_02317917.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218927477|ref|YP_002345352.1| type III secretion system protein [Yersinia pestis CO92] gi|229836525|ref|ZP_04456691.1| putative type III secretion apparatus protein [Yersinia pestis Pestoides A] gi|229840133|ref|ZP_04460292.1| putative type III secretion apparatus protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842214|ref|ZP_04462369.1| putative type III secretion apparatus protein [Yersinia pestis biovar Orientalis str. India 195] gi|229904047|ref|ZP_04519160.1| putative type III secretion apparatus protein [Yersinia pestis Nepal516] gi|294502343|ref|YP_003566405.1| putative type III secretion apparatus protein [Yersinia pestis Z176003] gi|51587964|emb|CAH19567.1| putative type III secretion apparatus protein, YscR/EscR [Yersinia pseudotuberculosis IP 32953] gi|115346088|emb|CAL18956.1| putative type III secretion apparatus protein [Yersinia pestis CO92] gi|149290089|gb|EDM40166.1| putative type III secretion apparatus protein [Yersinia pestis CA88-4125] gi|152962127|gb|ABS49588.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia pseudotuberculosis IP 31758] gi|162351293|gb|ABX85241.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia pestis Angola] gi|165921337|gb|EDR38561.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia pestis biovar Orientalis str. F1991016] gi|165990601|gb|EDR42902.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia pestis biovar Antiqua str. E1979001] gi|166204884|gb|EDR49364.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia pestis biovar Antiqua str. B42003004] gi|166963030|gb|EDR59051.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048392|gb|EDR59800.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054875|gb|EDR64677.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229679817|gb|EEO75920.1| putative type III secretion apparatus protein [Yersinia pestis Nepal516] gi|229690524|gb|EEO82578.1| putative type III secretion apparatus protein [Yersinia pestis biovar Orientalis str. India 195] gi|229696499|gb|EEO86546.1| putative type III secretion apparatus protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706209|gb|EEO92217.1| putative type III secretion apparatus protein [Yersinia pestis Pestoides A] gi|262360423|gb|ACY57144.1| putative type III secretion apparatus protein [Yersinia pestis D106004] gi|262364373|gb|ACY60930.1| putative type III secretion apparatus protein [Yersinia pestis D182038] gi|294352802|gb|ADE63143.1| putative type III secretion apparatus protein [Yersinia pestis Z176003] Length = 216 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 81/203 (39%), Positives = 130/203 (64%), Gaps = 6/203 (2%) Query: 48 ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRS 106 +LS+ P+L++M T F + +VFS+LR +G+ VPPN+ I LAL +T ++M+P LD Sbjct: 16 MLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQ 75 Query: 107 IEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSS--HRNTDITK 163 + + L N+ I Q P+ F++ NT + ++ F D+ + R D K Sbjct: 76 ARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVK 135 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 D + IL+P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P ++SLPF Sbjct: 136 PDSL--LILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPF 193 Query: 224 KVIFFVLIDGWSLLVENLVKSFI 246 K++ FVL+DGWSL++ LV S++ Sbjct: 194 KLLVFVLVDGWSLVLGQLVGSYL 216 >gi|261884803|ref|ZP_06008842.1| flagellar biosynthesis protein FliP [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 190 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 80/165 (48%), Positives = 106/165 (64%), Gaps = 4/165 (2%) Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R IIVFS LR MG +PP V+ISLAL +TF++M P +S GI+P + +I Sbjct: 30 TSFLRLIIVFSFLRQAMGTQQMPPTNVLISLALILTFFIMEPVAKQSYNEGIKPYLEEKI 89 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 A A+PF FM NTREKDL+LF + + NT D I + I P+F+IS Sbjct: 90 GYQDAFALGAKPFKEFMVRNTREKDLALFYRIRALPNPNT----VDDIPFTIAAPAFIIS 145 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 EL+ +FEIGF++ LP L+IDM+V +++M+MGMM LPP ISL FK Sbjct: 146 ELKTAFEIGFMLYLPVLVIDMVVNSVLMSMGMMTLPPEMISLTFK 190 >gi|78358622|ref|YP_390071.1| flagellar biosynthesis protein FliP [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78221027|gb|ABB40376.1| flagellar biosynthetic protein FliP [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 237 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 91/203 (44%), Positives = 133/203 (65%), Gaps = 6/203 (2%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T+LS+AP +++ VT F R IIVF +R MG+ ++PPN V+ SLA+FMT +M P Sbjct: 39 LLTVLSLAPAIMLTVTSFTRIIIVFHFVRQAMGLPTLPPNQVLASLAIFMTVVIMMPVGK 98 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH-RNTDITK 163 + +QP ++ +I A+ EP FM +TREKDLS+F + RN Sbjct: 99 EINDRALQPYLDERIGFREALTVAQEPLREFMFKHTREKDLSVFYGITGMERPRN----- 153 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 D + +L ++ISEL+ F IGFLI +PFL++DM+VA+I++AMGMMMLPP +S+PF Sbjct: 154 KDDVPTVMLAAGYVISELKTGFTIGFLIYIPFLVLDMVVASILLAMGMMMLPPMMVSMPF 213 Query: 224 KVIFFVLIDGWSLLVENLVKSFI 246 K++ FV++DGWSLL +LV SF+ Sbjct: 214 KILLFVMVDGWSLLTTSLVNSFM 236 >gi|45435136|gb|AAS60696.1| putative type III secretion apparatus protein [Yersinia pestis biovar Microtus str. 91001] Length = 201 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 81/203 (39%), Positives = 130/203 (64%), Gaps = 6/203 (2%) Query: 48 ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRS 106 +LS+ P+L++M T F + +VFS+LR +G+ VPPN+ I LAL +T ++M+P LD Sbjct: 1 MLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQ 60 Query: 107 IEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSS--HRNTDITK 163 + + L N+ I Q P+ F++ NT + ++ F D+ + R D K Sbjct: 61 ARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVK 120 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 D + IL+P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P ++SLPF Sbjct: 121 PDSL--LILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPF 178 Query: 224 KVIFFVLIDGWSLLVENLVKSFI 246 K++ FVL+DGWSL++ LV S++ Sbjct: 179 KLLVFVLVDGWSLVLGQLVGSYL 201 >gi|308050042|ref|YP_003913608.1| flagellar biosynthetic protein FliP [Ferrimonas balearica DSM 9799] gi|307632232|gb|ADN76534.1| flagellar biosynthetic protein FliP [Ferrimonas balearica DSM 9799] Length = 243 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 81/202 (40%), Positives = 126/202 (62%), Gaps = 4/202 (1%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 + T LS P +L+M+T F R I+V ++LR +G+ PPN ++I +AL +T ++M P Sbjct: 43 ALMTALSFLPAMLLMMTSFTRIIVVLAVLRQALGLQQSPPNKLLIGIALVLTLFIMRPVW 102 Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163 E P N ++T A+ P FM TRE DL + +A S + Sbjct: 103 TEIHEQAFLPYDNGELTLKQAVAVAEVPLRTFMLGQTRETDLEQMLKIAGESTQ----LS 158 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 + + + +L+P+F++SEL+ +F+IGFL+ +PFL+ID++VA+++M+MGMMML P ISLPF Sbjct: 159 AEEVPFSVLMPAFVLSELKTAFQIGFLLFIPFLVIDLVVASVLMSMGMMMLSPLIISLPF 218 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K++ FVL+DGWS+ V L SF Sbjct: 219 KLMVFVLVDGWSMTVGTLAASF 240 >gi|188991607|ref|YP_001903617.1| flagellar biosynthesis protein FliP [Xanthomonas campestris pv. campestris str. B100] gi|167733367|emb|CAP51568.1| Flagellar biosynthetic protein fliP [Xanthomonas campestris pv. campestris] Length = 280 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 86/206 (41%), Positives = 127/206 (61%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++T + T +++ P +L+++T F R IV +LR +G G P N V++ LA+F+T VM Sbjct: 76 LQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQTPSNQVLLGLAMFLTALVM 135 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P + G+QP +NNQI +TA +P FM RE DL F MA Sbjct: 136 MPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIRETDLMTFAGMAGDGKY-- 193 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++VA+++M+MGMMML P I Sbjct: 194 --AGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLVVASVLMSMGMMMLSPMLI 251 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 S PFK++ F+L+DGW L+V L SF Sbjct: 252 SAPFKILLFILVDGWVLVVGTLAASF 277 >gi|325928699|ref|ZP_08189871.1| flagellar biosynthetic protein FliP [Xanthomonas perforans 91-118] gi|325540931|gb|EGD12501.1| flagellar biosynthetic protein FliP [Xanthomonas perforans 91-118] Length = 270 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 86/206 (41%), Positives = 127/206 (61%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++T + T +++ P +L+++T F R IV +LR +G G P N V++ LA+F+T VM Sbjct: 66 LQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQTPSNQVLLGLAMFLTALVM 125 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P + G+QP +NNQI +TA +P FM RE DL F MA Sbjct: 126 MPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIRETDLMTFAGMAGDGKY-- 183 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++VA+++M+MGMMML P I Sbjct: 184 --AGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLVVASVLMSMGMMMLSPMLI 241 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 S PFK++ F+L+DGW L+V L SF Sbjct: 242 SAPFKILLFILVDGWVLVVGTLAASF 267 >gi|21231364|ref|NP_637281.1| flagellar biosynthesis protein FliP [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768583|ref|YP_243345.1| flagellar biosynthesis protein FliP [Xanthomonas campestris pv. campestris str. 8004] gi|21113027|gb|AAM41205.1| flagellar biosynthetic protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573915|gb|AAY49325.1| flagellar biosynthetic protein [Xanthomonas campestris pv. campestris str. 8004] Length = 280 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 86/206 (41%), Positives = 127/206 (61%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++T + T +++ P +L+++T F R IV +LR +G G P N V++ LA+F+T VM Sbjct: 76 LQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQTPSNQVLLGLAMFLTALVM 135 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P + G+QP +NNQI +TA +P FM RE DL F MA Sbjct: 136 MPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIRETDLMTFAGMAGDGKY-- 193 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++VA+++M+MGMMML P I Sbjct: 194 --AGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLVVASVLMSMGMMMLSPMLI 251 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 S PFK++ F+L+DGW L+V L SF Sbjct: 252 SAPFKILLFILVDGWVLVVGTLAASF 277 >gi|21242688|ref|NP_642270.1| flagellar biosynthesis protein FliP [Xanthomonas axonopodis pv. citri str. 306] gi|21108161|gb|AAM36806.1| flagellar biosynthetic protein [Xanthomonas axonopodis pv. citri str. 306] Length = 262 Score = 147 bits (370), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 86/206 (41%), Positives = 127/206 (61%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++T + T +++ P +L+++T F R IV +LR +G G P N V++ LA+F+T VM Sbjct: 58 LQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQTPSNQVLLGLAMFLTALVM 117 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P + G+QP +NNQI +TA +P FM RE DL F MA Sbjct: 118 MPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIRETDLMTFAGMAGDGKY-- 175 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++VA+++M+MGMMML P I Sbjct: 176 --AGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLVVASVLMSMGMMMLSPMLI 233 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 S PFK++ F+L+DGW L+V L SF Sbjct: 234 SAPFKILLFILVDGWVLVVGTLAASF 259 >gi|319795616|ref|YP_004157256.1| yop virulence translocation r [Variovorax paradoxus EPS] gi|315598079|gb|ADU39145.1| Yop virulence translocation R [Variovorax paradoxus EPS] Length = 219 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 75/205 (36%), Positives = 125/205 (60%), Gaps = 12/205 (5%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108 L + +MVT + + IIVF +LRT +G+ PPN+V+ +A+ ++ Y+M+P +E Sbjct: 18 LGVTSFAALMVTSYTKLIIVFGLLRTALGLQQTPPNMVLNGIAIILSVYIMAPV---GME 74 Query: 109 MGIQPLMNNQITET--------TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD 160 +G L N + + I P F++ +TRE++ F+ A S Sbjct: 75 VG-DALRNRTLGQKGEGLNDIVAVIDAAKVPLKEFLQKHTRERERQFFLKSASSMWPQAR 133 Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220 + ++ +L+PSF +SEL R+F+IGF+I L F+++D+IVAT+++A+GM M+ PT+IS Sbjct: 134 AAQLQPDDFMVLVPSFTLSELTRAFQIGFVIYLVFVVVDLIVATVLLALGMSMIAPTTIS 193 Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245 LPFK++ FV++DGW+ LV LV S+ Sbjct: 194 LPFKLLLFVMLDGWTRLVHGLVLSY 218 >gi|294664068|ref|ZP_06729470.1| flagellar biosynthesis pathway component FliP [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292606171|gb|EFF49420.1| flagellar biosynthesis pathway component FliP [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 281 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 86/206 (41%), Positives = 127/206 (61%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++T + T +++ P +L+++T F R IV +LR +G G P N V++ LA+F+T VM Sbjct: 77 LQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQTPSNQVLLGLAMFLTALVM 136 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P + G+QP +NNQI +TA +P FM RE DL F MA Sbjct: 137 MPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIRETDLMTFAGMAGDGKY-- 194 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++VA+++M+MGMMML P I Sbjct: 195 --AGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLVVASVLMSMGMMMLSPMLI 252 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 S PFK++ F+L+DGW L+V L SF Sbjct: 253 SAPFKILLFILVDGWVLVVGTLAASF 278 >gi|78047544|ref|YP_363719.1| flagellar biosynthesis protein FliP [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035974|emb|CAJ23665.1| flagellar biosynthesis pathway component FliP [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 281 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 86/206 (41%), Positives = 127/206 (61%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++T + T +++ P +L+++T F R IV +LR +G G P N V++ LA+F+T VM Sbjct: 77 LQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQTPSNQVLLGLAMFLTALVM 136 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P + G+QP +NNQI +TA +P FM RE DL F MA Sbjct: 137 MPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIRETDLMTFAGMAGDGKY-- 194 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++VA+++M+MGMMML P I Sbjct: 195 --AGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLVVASVLMSMGMMMLSPMLI 252 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 S PFK++ F+L+DGW L+V L SF Sbjct: 253 SAPFKILLFILVDGWVLVVGTLAASF 278 >gi|325917745|ref|ZP_08179932.1| flagellar biosynthetic protein FliP [Xanthomonas vesicatoria ATCC 35937] gi|325536044|gb|EGD07853.1| flagellar biosynthetic protein FliP [Xanthomonas vesicatoria ATCC 35937] Length = 280 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 86/206 (41%), Positives = 127/206 (61%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++T + T +++ P +L+++T F R IV +LR +G G P N V++ LA+F+T VM Sbjct: 76 LQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQTPSNQVLLGLAMFLTALVM 135 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P + G+QP +NNQI +TA +P FM RE DL F MA Sbjct: 136 MPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIRETDLMTFAGMAGDGKY-- 193 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++VA+++M+MGMMML P I Sbjct: 194 --AGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLVVASVLMSMGMMMLSPMLI 251 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 S PFK++ F+L+DGW L+V L SF Sbjct: 252 SAPFKILLFILVDGWVLVVGTLAASF 277 >gi|9663066|emb|CAC01098.1| FliP flagellar protein [Helicobacter pylori] gi|9663068|emb|CAC01099.1| FliP flagellar protein [Helicobacter pylori] gi|9663074|emb|CAC01102.1| FliP flagellar protein [Helicobacter pylori] gi|9663076|emb|CAC01103.1| FliP flagellar protein [Helicobacter pylori] gi|9663084|emb|CAC01105.1| FliP flagellar protein [Helicobacter pylori] gi|9663086|emb|CAC01106.1| FliP flagellar protein [Helicobacter pylori] gi|9663088|emb|CAC01107.1| FliP flagellar protein [Helicobacter pylori] gi|9663092|emb|CAC01109.1| FliP flagellar protein [Helicobacter pylori] gi|9663094|emb|CAC01110.1| FliP flagellar protein [Helicobacter pylori] gi|9663096|emb|CAC01111.1| FliP flagellar protein [Helicobacter pylori] gi|9663104|emb|CAC01115.1| FliP flagellar protein [Helicobacter pylori] gi|9663106|emb|CAC01116.1| FliP flagellar protein [Helicobacter pylori] Length = 160 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 69/156 (44%), Positives = 107/156 (68%), Gaps = 4/156 (2%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 + T+L +AP L++++T F R I+VFS LRT +G PP +++SL+L +TF++M P+L Sbjct: 9 ALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL 68 Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163 ++ + GI+P M+ +I+ T A ++ A PF FM NTREKDL+LF + + + T Sbjct: 69 KKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTP--- 125 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199 D + +LIP+FMISEL+ +F+IGFL+ LPFL+ID Sbjct: 126 -DEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVID 160 >gi|94987081|ref|YP_595014.1| flagellar biosynthesis protein FliP [Lawsonia intracellularis PHE/MN1-00] gi|94731330|emb|CAJ54693.1| Flagellar biosynthesis pathway, component FliP [Lawsonia intracellularis PHE/MN1-00] Length = 262 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 87/200 (43%), Positives = 134/200 (67%), Gaps = 4/200 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T+LS+AP +++ VT F R IIVF LR MG+ +PP ++ SLA+FMT +M P + Sbjct: 66 TVLSLAPAIMLTVTSFTRIIIVFHFLRQAMGIQQIPPTQILASLAIFMTVIIMFPVGKQI 125 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 + +QP ++ ++ + A+ R P F+ +TREKDLS+F +A R D Sbjct: 126 NDTALQPYLDERLGFSEALTRAQAPLRTFLFKHTREKDLSIFYSIA----RMEQPKNKDD 181 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 + +L +++ISEL+ F IGFLI +PFLI+DM+V+++++AMGMMMLPP +S+PFK++ Sbjct: 182 VPTILLSAAYVISELKTGFIIGFLIYIPFLIVDMVVSSVLLAMGMMMLPPMMVSMPFKLL 241 Query: 227 FFVLIDGWSLLVENLVKSFI 246 FV+IDGW+LL+ +LV SF+ Sbjct: 242 LFVMIDGWNLLIGSLVNSFL 261 >gi|87307408|ref|ZP_01089553.1| flagellar biosynthetic protein fliP-putative transporter of flagellar proteins [Blastopirellula marina DSM 3645] gi|87290148|gb|EAQ82037.1| flagellar biosynthetic protein fliP-putative transporter of flagellar proteins [Blastopirellula marina DSM 3645] Length = 317 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 83/228 (36%), Positives = 127/228 (55%), Gaps = 27/228 (11%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T+LS+AP +L+M T F R IIV +LR +G +PP+ V+ ++ALFMT +M PT Sbjct: 86 LLTVLSLAPAILLMTTGFIRIIIVLGLLRQALGTQQLPPSQVVTAIALFMTILLMYPTWQ 145 Query: 105 RSIEMGIQPLMNNQITETTAIQ---------------------RVAEPFWVFMRNN---- 139 E + P ++ T Q + +P FM Sbjct: 146 EVYEESVGPYTREEVNPDTGQQYKLFAVEDPATGEMGPDEAWEKGTKPIRHFMSKQIDIA 205 Query: 140 TREKDLSLFMDMAHSSHRNT--DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197 D+ +F + ++ + D + + LIP+F++SEL+ +F IGF I LPFLI Sbjct: 206 GNSDDVWMFFEFLPQGTKDKIGEPQSYDDVPLQALIPAFILSELKTAFLIGFQIYLPFLI 265 Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +D++VA+I ++MGMMMLPP ISLPFK++ FVL+DGW+L+V L++SF Sbjct: 266 LDIVVASITISMGMMMLPPVMISLPFKLLLFVLVDGWTLVVGMLLQSF 313 >gi|120597289|ref|YP_961863.1| flagellar biosynthesis protein FliP [Shewanella sp. W3-18-1] gi|146294566|ref|YP_001184990.1| flagellar biosynthesis protein FliP [Shewanella putrefaciens CN-32] gi|120557382|gb|ABM23309.1| flagellar biosynthetic protein FliP [Shewanella sp. W3-18-1] gi|145566256|gb|ABP77191.1| flagellar biosynthetic protein FliP [Shewanella putrefaciens CN-32] Length = 244 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 83/202 (41%), Positives = 128/202 (63%), Gaps = 3/202 (1%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 + T +S P++L+M+T F R IIV +ILR +G+ PPN V++ +AL +T ++M P Sbjct: 45 ALMTAISFLPVMLMMLTSFTRIIIVLAILRQALGLQQSPPNRVLVGIALILTIFIMRPVG 104 Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163 D+ + P +I AI P FM TRE DL + +A+ T + Sbjct: 105 DKIYKEAYLPYDQGKIELMEAISIAKVPLTRFMLAQTRETDLEQMLKIANEP---THMKT 161 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 + + + +L+P+F++SEL+ +F+IGFLI LPFL+ID++VA+++M+MGMMML P ISLPF Sbjct: 162 AEEVPFFVLMPAFVLSELKTAFQIGFLIFLPFLVIDLVVASVLMSMGMMMLSPLIISLPF 221 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K++ FVL+DGW++ V L SF Sbjct: 222 KLMIFVLVDGWAMTVSTLTASF 243 >gi|221200568|ref|ZP_03573610.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia multivorans CGD2M] gi|221209245|ref|ZP_03582235.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia multivorans CGD2] gi|221170901|gb|EEE03358.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia multivorans CGD2] gi|221179909|gb|EEE12314.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia multivorans CGD2M] Length = 224 Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 134/219 (61%), Gaps = 21/219 (9%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V + L IAP +MVT + + ++V +LR+ +G+ VPPNLV+ +AL ++ ++M Sbjct: 8 VALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIM 67 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAE----------PFWVFMRNNTREKDLSLFM 149 +P + M I+ + + +T+ A+ P F+ ++TR++D F+ Sbjct: 68 AP-----VGMSIRDALQARHFDTSGQLSTADVGVLADAALPPIKDFLVSHTRQRDRDFFV 122 Query: 150 DMAHS---SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 A S +R DI +D + +L+PSF ++EL ++F+IGF+I + F+++D++VA I+ Sbjct: 123 RTATSVWPKNRADDIKDDDLL---VLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANIL 179 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +A+GM M+ PT+IS+PFK++ FV +DGWSLLV LV S+ Sbjct: 180 LALGMQMISPTTISVPFKLLLFVALDGWSLLVHGLVLSY 218 >gi|9663064|emb|CAC01097.1| FliP flagellar protein [Helicobacter pylori] gi|9663070|emb|CAC01100.1| FliP flagellar protein [Helicobacter pylori] gi|9663082|emb|CAC01104.1| FliP flagellar protein [Helicobacter pylori] gi|9663108|emb|CAC01117.1| FliP flagellar protein [Helicobacter pylori] Length = 160 Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 69/156 (44%), Positives = 107/156 (68%), Gaps = 4/156 (2%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 + T+L +AP L++++T F R I+VFS LRT +G PP +++SL+L +TF++M P+L Sbjct: 9 ALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL 68 Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163 ++ + GI+P M+ +I+ T A ++ A PF FM NTREKDL+LF + + + T Sbjct: 69 KKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTP--- 125 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199 D + +LIP+FMISEL+ +F+IGFL+ LPFL+ID Sbjct: 126 -DDVSLSVLIPAFMISELKTAFQIGFLLYLPFLVID 160 >gi|291086629|ref|ZP_06356304.2| type III secretion apparatus protein, YscR/HrcR family [Citrobacter youngae ATCC 29220] gi|291067492|gb|EFE05601.1| type III secretion apparatus protein, YscR/HrcR family [Citrobacter youngae ATCC 29220] Length = 218 Score = 145 bits (366), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 73/199 (36%), Positives = 125/199 (62%), Gaps = 2/199 (1%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRSI 107 LS+ P +++ T F + IVFS+LR +G+ +PPN+ I LAL ++ ++M+P + + Sbjct: 20 LSVLPFIVVSCTSFIKLAIVFSLLRNALGIQQIPPNMSIYGLALILSLFIMAPVGMQIND 79 Query: 108 EMGIQPLMNNQITETTAIQR-VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 + +P+ N + + V +P+ VF++ NT+EK + F + H + + + Sbjct: 80 NVQKEPISFNDVNLYERLDNSVLQPYLVFLQRNTKEKQIRYFSRIGHQTWPKKYQERLNK 139 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 +++P+F I++L +F+IG LI LPF+ ID+IV+ I++AMGMMM+ PT+ISLPFK++ Sbjct: 140 NSLFVMLPAFGITQLDEAFKIGLLIYLPFIAIDLIVSNILLAMGMMMVSPTTISLPFKIM 199 Query: 227 FFVLIDGWSLLVENLVKSF 245 F++ GW L+E LV SF Sbjct: 200 LFIIAGGWQFLIEKLVLSF 218 >gi|9663100|emb|CAC01113.1| FliP flagellar protein [Helicobacter pylori] Length = 160 Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 69/156 (44%), Positives = 106/156 (67%), Gaps = 4/156 (2%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 + T+L +AP L++++T F R I+VFS LRT +G PP +++SL+L +TF++M P L Sbjct: 9 ALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPNL 68 Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163 ++ + GI+P M+ +I+ T A ++ A PF FM NTREKDL+LF + + + T Sbjct: 69 KKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTP--- 125 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199 D + +LIP+FMISEL+ +F+IGFL+ LPFL+ID Sbjct: 126 -DEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVID 160 >gi|302338093|ref|YP_003803299.1| flagellar biosynthetic protein FliP [Spirochaeta smaragdinae DSM 11293] gi|301635278|gb|ADK80705.1| flagellar biosynthetic protein FliP [Spirochaeta smaragdinae DSM 11293] Length = 260 Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 76/202 (37%), Positives = 127/202 (62%), Gaps = 8/202 (3%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 +++++P ++I+ TCF R IVF ++ + + VPPN V++ +A+F+T ++M PT ++ Sbjct: 63 AVITLSPSIIILTTCFLRIAIVFDFIKRSLSLQQVPPNQVMMGVAIFLTIFIMWPTGEQI 122 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFM--RNNTREKDLSLFMDMAHSSHRNTDITKN 164 + +P + +I A P +FM + + +++ LFM M R +N Sbjct: 123 YQNSFRPFADGEIGIQEMYDEAAAPLRLFMYRQMDGDHENIQLFMRM-----RGLGKPEN 177 Query: 165 -DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 + +LIPSF++ EL +F+IG L+ +PF+IIDM+VA+ +M+MGM+MLPP ISLPF Sbjct: 178 FSQVPTYVLIPSFVLHELTVAFKIGILLFVPFIIIDMVVASTLMSMGMIMLPPVMISLPF 237 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K+I FVL+DGW L+ + L+ SF Sbjct: 238 KLILFVLVDGWDLITQQLILSF 259 >gi|289666110|ref|ZP_06487691.1| flagellar biosynthesis protein FliP [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 281 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 85/206 (41%), Positives = 127/206 (61%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++T + T +++ P +L+++T F R IV +LR +G G P N V++ L++F+T VM Sbjct: 77 LQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQTPSNQVLLGLSMFLTALVM 136 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P + G+QP +NNQI +TA +P FM RE DL F MA Sbjct: 137 MPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIRETDLMTFAGMAGDGKY-- 194 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++VA+++M+MGMMML P I Sbjct: 195 --AGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLVVASVLMSMGMMMLSPMLI 252 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 S PFK++ F+L+DGW L+V L SF Sbjct: 253 SAPFKILLFILVDGWVLVVGTLAASF 278 >gi|289670559|ref|ZP_06491634.1| flagellar biosynthesis protein FliP [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 276 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 85/206 (41%), Positives = 127/206 (61%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++T + T +++ P +L+++T F R IV +LR +G G P N V++ L++F+T VM Sbjct: 72 LQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQTPSNQVLLGLSMFLTALVM 131 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P + G+QP +NNQI +TA +P FM RE DL F MA Sbjct: 132 MPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIRETDLMTFAGMAGDGKY-- 189 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++VA+++M+MGMMML P I Sbjct: 190 --AGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLVVASVLMSMGMMMLSPMLI 247 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 S PFK++ F+L+DGW L+V L SF Sbjct: 248 SAPFKILLFILVDGWVLVVGTLAASF 273 >gi|126176172|ref|YP_001052321.1| flagellar biosynthesis protein FliP [Shewanella baltica OS155] gi|125999377|gb|ABN63452.1| flagellar biosynthetic protein FliP [Shewanella baltica OS155] Length = 244 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 87/246 (35%), Positives = 143/246 (58%), Gaps = 5/246 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 ++R ++ L P+ + ++ ++ D + + T +S PI+L+M+T Sbjct: 2 IVRVLLLSILLFAPQALASEGLTLFTLDSAQDSQAVNIKLEILALMTAISFLPIMLMMLT 61 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R IIV +ILR +G+ PPN V++ +AL +T ++M P D+ + P +I Sbjct: 62 SFTRIIIVLAILRQALGLQQSPPNRVLVGIALILTIFIMRPVGDKIYKEAYLPYDQGKIE 121 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS-SHRNTDITKNDHIEYRILIPSFMIS 179 A+ P FM TR DL + +A+ +H T + + + +L+P+F++S Sbjct: 122 LMEAVSIAKVPLTRFMLAQTRATDLEQMLKIANEPTHMKT----AEEVPFFVLMPAFVLS 177 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+ +F+IGFL+ LPFL+ID++VA+++M+MGMMML P ISLPFK++ FVL+DGWS+ V Sbjct: 178 ELKTAFQIGFLLFLPFLVIDLVVASVLMSMGMMMLSPLIISLPFKLMVFVLVDGWSMTVS 237 Query: 240 NLVKSF 245 L SF Sbjct: 238 TLTASF 243 >gi|327478782|gb|AEA82092.1| flagellar biosynthesis protein FliP [Pseudomonas stutzeri DSM 4166] Length = 251 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 83/200 (41%), Positives = 126/200 (63%), Gaps = 4/200 (2%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 I T+L P +L+M+TCF RFIIV +ILR +G+ PPN V+I +AL +T VM P Sbjct: 52 IMTLLGFLPAMLMMMTCFTRFIIVLAILRQAIGLQQSPPNQVLIGIALIVTLLVMRPVWQ 111 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 +P N++IT A+ FM T + L + +A D+ Sbjct: 112 EIHSQAYEPFHNDEITLEQALDSAKGSLAGFMLAQTNKNSLETMVALA-GEQLPEDL--- 167 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D +++ +L+P+F++SEL+ +F++GF+I +PFL+ID++VA+++MAMGMMML P ISLPFK Sbjct: 168 DELDFSLLLPAFVLSELKTAFQLGFMIFVPFLVIDLVVASVLMAMGMMMLSPMMISLPFK 227 Query: 225 VIFFVLIDGWSLLVENLVKS 244 ++ FVL+DGW+LL+ L S Sbjct: 228 LMVFVLVDGWALLMGTLTTS 247 >gi|294828142|ref|NP_712792.2| flagellar biosynthesis protein FliP [Leptospira interrogans serovar Lai str. 56601] gi|293385989|gb|AAN49810.2| flagellar biosynthesis protein FliP [Leptospira interrogans serovar Lai str. 56601] Length = 251 Score = 145 bits (365), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 78/202 (38%), Positives = 133/202 (65%), Gaps = 7/202 (3%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 TILS+AP +++ +T F + +IV +R + + ++PPN V++ LALFMTF++M+PTL+ Sbjct: 53 TILSLAPAIVMSLTSFTKIVIVLDFVRRALSIQNLPPNQVMMGLALFMTFFIMAPTLNTV 112 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMR---NNTREKDLSLFMDMAHSSHRNTDITK 163 E + P + +I ++ P FM + KD++LF+ + + Sbjct: 113 NEKALGPYLEGKIDTNAFFEKGMIPIREFMMRQIGTSGAKDVALFLKIGKVEK----VES 168 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 D + +LIP+FM+SE++++F IG +I +PF++ID++VA+ +++MG+MMLPP +SLPF Sbjct: 169 FDDVPSYVLIPAFMLSEIKKAFWIGIVIFIPFIVIDLVVASALLSMGLMMLPPVMVSLPF 228 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K+I FVL+DGW+L+V LV+S+ Sbjct: 229 KLILFVLVDGWNLIVYELVRSY 250 >gi|187918149|ref|YP_001883712.1| flagellar biosynthesis protein FliP [Borrelia hermsii DAH] gi|119860997|gb|AAX16792.1| flagellar biosynthetic protein FliP [Borrelia hermsii DAH] Length = 254 Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 80/199 (40%), Positives = 125/199 (62%), Gaps = 9/199 (4%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 +P L+++T F R IV +R + + PPN VI+ LALF+T + M PT + + Sbjct: 61 SPAFLVLMTSFLRIAIVLDFIRRALSLQQSPPNQVIMGLALFLTLFTMWPTFNIIYKDAY 120 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMR---NNTREKDLSLFMDMAHSSHRNTDITKN-DHI 167 PL +++I+ R P FM +N++ +++ LFM +++ S KN + Sbjct: 121 LPLKDSKISFNEFYDRGIAPLRNFMYKQMSNSKHEEIKLFMSISNYSR-----PKNFSEV 175 Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227 +LI SF++ EL+ +F++G LI LPF++ID+IVA ++MAMGM+MLPP ISLPFK+I Sbjct: 176 PTHVLIASFVLHELKVAFKMGILIFLPFIVIDIIVAAVLMAMGMIMLPPVMISLPFKLIL 235 Query: 228 FVLIDGWSLLVENLVKSFI 246 FV++DGW+L+ LVKSF+ Sbjct: 236 FVMVDGWTLITSGLVKSFM 254 >gi|163802009|ref|ZP_02195905.1| translocation protein in type III secretion [Vibrio sp. AND4] gi|159174150|gb|EDP58958.1| translocation protein in type III secretion [Vibrio sp. AND4] Length = 216 Score = 144 bits (364), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 73/201 (36%), Positives = 128/201 (63%), Gaps = 2/201 (0%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 +L++ P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ ++M+P + Sbjct: 15 ALLALIPFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFET 74 Query: 107 IEMGIQPLMNNQITETTA--IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + Q ++ + +ET I+ +P+ F++ + RE + + F D A + + + Sbjct: 75 YDYVKQHDISLEDSETIEGLIESGLQPYREFLKKHIRETESAFFTDAAKTLWPQKYVDRL 134 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + +L+P+F +SEL R+FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK Sbjct: 135 ESDSLLLLLPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISLPFK 194 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW+ L LV S+ Sbjct: 195 LLLFVLLDGWTKLTHGLVLSY 215 >gi|114566400|ref|YP_753554.1| flagellar biosynthesis protein FliP [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337335|gb|ABI68183.1| flagellar biosynthetic protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 240 Score = 144 bits (364), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 98/218 (44%), Positives = 148/218 (67%), Gaps = 11/218 (5%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P DLS++ ++ + T+L++AP +LIM+T F R ++V + +RT + +PPN ++I Sbjct: 31 PQDLSVALQLII---LITVLTLAPAILIMLTSFTRIMVVLAFIRTSLATQQMPPNQLLIG 87 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 +ALF+TF+VM+PT +QP +IT+ A ++ P FM TREKDL+LF+ Sbjct: 88 MALFLTFFVMAPTFQEVNSQALQPYFKGKITQEQAFEKGMNPLRSFMFKQTREKDLALFV 147 Query: 150 DMA--HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 M+ H DI +LIPSF+ISEL+ +F+IGF+I +PFLIIDM+VA+ +M Sbjct: 148 KMSKMERPHNFKDIPN------YVLIPSFVISELKTAFQIGFIIFIPFLIIDMVVASALM 201 Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MGMMMLPP ISLPFK++ FVL+DGW+L++++L+ SF Sbjct: 202 SMGMMMLPPMMISLPFKILLFVLVDGWNLVIQSLILSF 239 >gi|45657250|ref|YP_001336.1| flagellar biosynthesis protein FliP [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600488|gb|AAS69973.1| flagellar protein export system [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 267 Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 78/202 (38%), Positives = 133/202 (65%), Gaps = 7/202 (3%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 TILS+AP +++ +T F + +IV +R + + ++PPN V++ LALFMTF++M+PTL+ Sbjct: 69 TILSLAPAIVMSLTSFTKIVIVLDFVRRALSIQNLPPNQVMMGLALFMTFFIMAPTLNTV 128 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN---TREKDLSLFMDMAHSSHRNTDITK 163 E + P + +I ++ P FM + KD++LF+ + + Sbjct: 129 NEKALGPYLEGKIDTNAFFEKGMIPIREFMMRQIGTSGAKDVALFLKIGKVEK----VES 184 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 D + +LIP+FM+SE++++F IG +I +PF++ID++VA+ +++MG+MMLPP +SLPF Sbjct: 185 FDDVPSYVLIPAFMLSEIKKAFWIGIVIFIPFIVIDLVVASALLSMGLMMLPPVMVSLPF 244 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K+I FVL+DGW+L+V LV+S+ Sbjct: 245 KLILFVLVDGWNLIVYELVRSY 266 >gi|166712022|ref|ZP_02243229.1| flagellar biosynthesis protein FliP [Xanthomonas oryzae pv. oryzicola BLS256] Length = 281 Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 85/206 (41%), Positives = 127/206 (61%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++T + T +++ P +L+++T F R IV +LR +G G P N V++ L++F+T VM Sbjct: 77 LQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQTPSNQVLLGLSMFLTALVM 136 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P + G+QP +NNQI +TA +P FM RE DL F MA Sbjct: 137 MPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIRETDLMTFAGMAGDGKY-- 194 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++VA+++M+MGMMML P I Sbjct: 195 --VGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLVVASVLMSMGMMMLSPMLI 252 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 S PFK++ F+L+DGW L+V L SF Sbjct: 253 SAPFKILLFILVDGWVLVVGTLAASF 278 >gi|58582234|ref|YP_201250.1| flagellar biosynthesis protein FliP [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624127|ref|YP_451499.1| flagellar biosynthesis protein FliP [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58426828|gb|AAW75865.1| flagellar biosynthetic protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368067|dbj|BAE69225.1| flagellar biosynthetic protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 281 Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 85/206 (41%), Positives = 127/206 (61%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++T + T +++ P +L+++T F R IV +LR +G G P N V++ L++F+T VM Sbjct: 77 LQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQTPSNQVLLGLSMFLTALVM 136 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P + G+QP +NNQI +TA +P FM RE DL F MA Sbjct: 137 MPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIRETDLMTFAGMAGDGKY-- 194 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++VA+++M+MGMMML P I Sbjct: 195 --VGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLVVASVLMSMGMMMLSPMLI 252 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 S PFK++ F+L+DGW L+V L SF Sbjct: 253 SAPFKILLFILVDGWVLVVGTLAASF 278 >gi|332298229|ref|YP_004440151.1| flagellar biosynthetic protein FliP [Treponema brennaborense DSM 12168] gi|332181332|gb|AEE17020.1| flagellar biosynthetic protein FliP [Treponema brennaborense DSM 12168] Length = 277 Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 76/197 (38%), Positives = 118/197 (59%), Gaps = 6/197 (3%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +LI++TCF RF IV ++ + + VPP V+ +A FMT ++M PT + Sbjct: 84 APSILILLTCFLRFSIVLDFIKRALSLQQVPPTAVLNGIAFFMTLFIMWPTFTDIYDNSF 143 Query: 112 QPLMNNQITETTAIQRVAEPFWVFM--RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169 +PL + +I A P +FM + T ++LFM M T H+ Sbjct: 144 KPLSDGEIGIEAAFTEAEAPLRIFMFKQMGTNTDYITLFMSMGGLDRPQTLADVPSHV-- 201 Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229 LIP+++++EL +F+IG L+ +PF++IDM+VA+++M+MGM+MLPP IS+PFK++ FV Sbjct: 202 --LIPAYILNELTVAFKIGVLLYIPFIVIDMVVASVLMSMGMIMLPPVQISMPFKLMLFV 259 Query: 230 LIDGWSLLVENLVKSFI 246 LIDGW LL + L S + Sbjct: 260 LIDGWGLLTQQLFNSIV 276 >gi|10955564|ref|NP_052405.1| type III secretion system protein [Yersinia enterocolitica] gi|28373022|ref|NP_783679.1| type III secretion system protein [Yersinia enterocolitica] gi|32470292|ref|NP_863527.1| type III secretion system protein [Yersinia enterocolitica] gi|122815816|ref|YP_001004082.1| type III secretion system protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332163586|ref|YP_004424928.1| type III secretion system protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|14579350|gb|AAK69227.1|AF336309_22 YscR [Yersinia enterocolitica] gi|4324351|gb|AAD16828.1| YscR [Yersinia enterocolitica W22703] gi|23630594|gb|AAN37550.1| YscR [Yersinia enterocolitica] gi|121663690|emb|CAL10052.1| putative type III secretion protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|310923235|emb|CBW54701.1| YscR, T3SS component [Yersinia enterocolitica (type O:8)] gi|318608197|emb|CBY78171.1| type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components) [Yersinia enterocolitica subsp. palearctica Y11] gi|325667816|gb|ADZ44459.1| type III secretion system protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 217 Score = 144 bits (364), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 74/198 (37%), Positives = 123/198 (62%), Gaps = 16/198 (8%) Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116 +M T F +F +VFS+LR +G+ +PPN+ + LA+ ++ YVM+P + Q + Sbjct: 25 VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAP-----VGFATQDYLQ 79 Query: 117 NQITETTAIQRVAE-------PFWVFMRNNTREKDLSLFMDMAHS--SHRNTDITKNDHI 167 T I+ V + P+ +F++ + + ++ S F+D + D ++D + Sbjct: 80 ANEVSLTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSL 139 Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227 IL+P+F +SEL R+FEIGFLI LPF++ID++++ I++AMGMMM+ P +ISLPFK++ Sbjct: 140 --FILLPAFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISLPFKLLL 197 Query: 228 FVLIDGWSLLVENLVKSF 245 FVL+DGW+ L LV S+ Sbjct: 198 FVLLDGWTRLTHGLVISY 215 >gi|46578461|ref|YP_009269.1| flagellar biosynthesis protein FliP [Desulfovibrio vulgaris str. Hildenborough] gi|120603955|ref|YP_968355.1| flagellar biosynthesis protein FliP [Desulfovibrio vulgaris DP4] gi|46447872|gb|AAS94528.1| flagellar biosynthetic protein fliP [Desulfovibrio vulgaris str. Hildenborough] gi|120564184|gb|ABM29928.1| flagellar biosynthetic protein FliP [Desulfovibrio vulgaris DP4] Length = 235 Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 85/202 (42%), Positives = 134/202 (66%), Gaps = 4/202 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T+LS+AP +++ VT F R IIVF +R +G+ ++PP+ V+ SLA+FMT +M+P Sbjct: 37 MLTVLSLAPAIMLTVTSFTRIIIVFHFVRQALGVQALPPSQVLASLAIFMTVVIMTPVGK 96 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + +QP + +I A+++ P FM +TREKDLS+F ++ + Sbjct: 97 EINDNALQPYLREEIGFNEALKKAEAPMRTFMFKHTREKDLSVF----YAVTKMEQPRSK 152 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D + +L ++ISEL+ F IGFLI +PFLI+DM++++I++AMGMMMLPP +S+PFK Sbjct: 153 DDVPTIMLAAGYVISELKTGFTIGFLIYIPFLILDMVISSILLAMGMMMLPPMMVSMPFK 212 Query: 225 VIFFVLIDGWSLLVENLVKSFI 246 ++ FV++DGW LLV +LV SF+ Sbjct: 213 LLLFVMVDGWGLLVGSLVNSFM 234 >gi|188576794|ref|YP_001913723.1| flagellar biosynthesis protein FliP [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576986|ref|YP_001913915.1| flagellar biosynthesis protein FliP [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521246|gb|ACD59191.1| flagellar biosynthetic protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521438|gb|ACD59383.1| flagellar biosynthetic protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 281 Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 85/206 (41%), Positives = 127/206 (61%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++T + T +++ P +L+++T F R IV +LR +G G P N V++ L++F+T VM Sbjct: 77 LQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQTPSNQVLLGLSMFLTALVM 136 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P + G+QP +NNQI +TA +P FM RE DL F MA Sbjct: 137 MPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIRETDLMTFAGMAGDGKY-- 194 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++VA+++M+MGMMML P I Sbjct: 195 --VGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLVVASVLMSMGMMMLSPMLI 252 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 S PFK++ F+L+DGW L+V L SF Sbjct: 253 SAPFKILLFILVDGWVLVVGTLAASF 278 >gi|254523353|ref|ZP_05135408.1| flagellar biosynthetic protein FliP [Stenotrophomonas sp. SKA14] gi|219720944|gb|EED39469.1| flagellar biosynthetic protein FliP [Stenotrophomonas sp. SKA14] Length = 259 Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 88/207 (42%), Positives = 130/207 (62%), Gaps = 6/207 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++T + T +++ P +L+++T F R IIV +LR +G G P N V++ LALF+T VM Sbjct: 55 LQTLLLMTAITLIPSMLLVLTSFTRIIIVLGLLRQALGTGQTPSNQVLLGLALFLTAMVM 114 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-HSSHRN 158 PT D++ G+ P +N +I TA P FM RE DL F +A H ++ + Sbjct: 115 MPTWDKAWSTGMAPYLNGEIDFQTAWTLTTTPLRGFMLAQIRETDLMTFAGIAGHGTYAS 174 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 D I + +L+ SF+ SEL+ +FEIGFLI +PF+IID++VA+++M+MGMMML P Sbjct: 175 -----PDAIPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLVVASVLMSMGMMMLSPML 229 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 +S PFK++ FVL+DGW L V L SF Sbjct: 230 VSAPFKILLFVLVDGWVLTVGTLAASF 256 >gi|108763107|ref|YP_630667.1| type III secretion system protein [Myxococcus xanthus DK 1622] gi|108466987|gb|ABF92172.1| FliP/MopC/SpaP family protein [Myxococcus xanthus DK 1622] Length = 231 Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 72/207 (34%), Positives = 124/207 (59%), Gaps = 9/207 (4%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP---TLDR 105 + + P L+M T F + +V SI+R+ +G +PP VI LA+ +T Y+M+P + R Sbjct: 25 MGLVPFALMMATSFVKISVVLSIVRSALGTQQIPPTQVITGLAIILTVYIMAPVGQQMYR 84 Query: 106 SIEMGIQPLMNNQITETT------AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 + + I + T A + EP ++ KD +LF ++A + Sbjct: 85 AAGLDIWAKGPGVFSSETVGSMLGAANKSKEPLREWLIKKVTTKDRALFFNLAKKMRKGE 144 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 D + ++ ++IP+F++SEL+ +F+IGFL+ +PF++IDM+VA I++A+GM ML PT+I Sbjct: 145 DRDAVESNDFMVIIPAFVVSELKEAFQIGFLLFVPFIVIDMVVANILLALGMHMLSPTTI 204 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246 S+PFK++ FVL+DGW L+ + LV ++ Sbjct: 205 SMPFKLLLFVLVDGWYLIAKGLVVGYL 231 >gi|150020821|ref|YP_001306175.1| flagellar biosynthesis protein FliP [Thermosipho melanesiensis BI429] gi|149793342|gb|ABR30790.1| flagellar biosynthetic protein FliP [Thermosipho melanesiensis BI429] Length = 251 Score = 144 bits (364), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 74/198 (37%), Positives = 121/198 (61%), Gaps = 9/198 (4%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +LI+ T F R I+VFS +R +G PPN ++I LALF+TF++M P + I Sbjct: 56 APSILILFTSFTRIIVVFSFVRNALGTRQTPPNQILIGLALFLTFFIMQPVWNDIYNNAI 115 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTR----EKDLSLFMDMAHSSHRNTDITKNDHI 167 P +N++I R + FM + E ++ + + N + T N Sbjct: 116 TPYLNSEIGYEEMFSRSMDRLRTFMLTEIKIHHNEDNIYILAENVKKQIDNIEDTPNS-- 173 Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227 ILIP+F+I EL F++G L+ +PF+++DM+VA+I++++GM+M+PP +SLPFK++ Sbjct: 174 ---ILIPAFVIGELEIGFKMGILLYIPFIVMDMVVASILLSLGMIMIPPVLVSLPFKILL 230 Query: 228 FVLIDGWSLLVENLVKSF 245 FVL++GW +L+ +L+KSF Sbjct: 231 FVLVNGWDILIGSLIKSF 248 >gi|16082732|ref|NP_395178.1| type III secretion system protein [Yersinia pestis CO92] gi|31795277|ref|NP_857738.1| type III secretion system protein [Yersinia pestis KIM] gi|31795479|ref|NP_857933.1| type III secretion system protein [Yersinia pestis KIM] gi|45478540|ref|NP_995367.1| type III secretion system protein [Yersinia pestis biovar Microtus str. 91001] gi|51593913|ref|YP_068480.1| type III secretion system protein [Yersinia pseudotuberculosis IP 32953] gi|108793660|ref|YP_636810.1| type III secretion system protein [Yersinia pestis Antiqua] gi|145597138|ref|YP_001154602.1| type III secretion system protein [Yersinia pestis Pestoides F] gi|149192695|ref|YP_001293927.1| type III secretion system protein [Yersinia pestis CA88-4125] gi|162417761|ref|YP_001604476.1| type III secretion system protein [Yersinia pestis Angola] gi|165927798|ref|ZP_02223630.1| type III secretion apparatus protein YscR [Yersinia pestis biovar Orientalis str. F1991016] gi|165940058|ref|ZP_02228592.1| type III secretion apparatus protein YscR [Yersinia pestis biovar Orientalis str. IP275] gi|166011710|ref|ZP_02232608.1| type III secretion apparatus protein YscR [Yersinia pestis biovar Antiqua str. E1979001] gi|166214467|ref|ZP_02240502.1| type III secretion apparatus protein YscR [Yersinia pestis biovar Antiqua str. B42003004] gi|167401968|ref|ZP_02307454.1| type III secretion apparatus protein YscR [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422404|ref|ZP_02314157.1| type III secretion apparatus protein YscR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167422439|ref|ZP_02314192.1| type III secretion apparatus protein YscR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167422881|ref|ZP_02314634.1| type III secretion apparatus protein YscR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426865|ref|ZP_02318618.1| type III secretion apparatus protein YscR [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186897578|ref|YP_001874689.1| type III secretion system protein [Yersinia pseudotuberculosis PB1/+] gi|229896860|ref|ZP_04512020.1| putative Yop secretion membrane protein [Yersinia pestis Pestoides A] gi|229900215|ref|ZP_04515351.1| putative Yop secretion membrane protein [Yersinia pestis biovar Orientalis str. India 195] gi|294496839|ref|YP_003560536.1| needle complex export protein [Yersinia pestis Z176003] gi|322836570|ref|YP_004210066.1| type III secretion apparatus protein YscR [Yersinia pestis Java 9] gi|57015234|sp|P69980|YSCR_YERPE RecName: Full=Yop proteins translocation protein R gi|57015235|sp|P69981|YSCR_YERPS RecName: Full=Yop proteins translocation protein R gi|475123|gb|AAA27678.1| yscR [Yersinia pseudotuberculosis] gi|2465659|gb|AAB72201.1| YscR [Yersinia pestis] gi|2996237|gb|AAC62560.1| Yop proteins translocation protein R homolog [Yersinia pestis KIM 10] gi|3822067|gb|AAC69787.1| type III secretion protein [Yersinia pestis KIM 10] gi|5832464|emb|CAB54921.1| putative Yop secretion membrane protein [Yersinia pestis CO92] gi|45357162|gb|AAS58558.1| putative Yop secretion membrane protein YscR [Yersinia pestis biovar Microtus str. 91001] gi|51591610|emb|CAF25414.1| yscR; putative Yop secretion membrane protein [Yersinia pseudotuberculosis IP 32953] gi|108782207|gb|ABG16262.1| Yop secretion membrane protein [Yersinia pestis Antiqua] gi|145212906|gb|ABP42312.1| Yop secretion membrane protein [Yersinia pestis Pestoides F] gi|148872353|gb|ABR14843.1| putative Yop secretion membrane protein [Yersinia pestis CA88-4125] gi|162354781|gb|ABX88728.1| type III secretion apparatus protein YscR [Yersinia pestis Angola] gi|165911968|gb|EDR30611.1| type III secretion apparatus protein YscR [Yersinia pestis biovar Orientalis str. IP275] gi|165920234|gb|EDR37535.1| type III secretion apparatus protein YscR [Yersinia pestis biovar Orientalis str. F1991016] gi|165989317|gb|EDR41618.1| type III secretion apparatus protein YscR [Yersinia pestis biovar Antiqua str. E1979001] gi|166204360|gb|EDR48840.1| type III secretion apparatus protein YscR [Yersinia pestis biovar Antiqua str. B42003004] gi|166958171|gb|EDR55192.1| type III secretion apparatus protein YscR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|166958641|gb|EDR55662.1| type III secretion apparatus protein YscR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|166958676|gb|EDR55697.1| type III secretion apparatus protein YscR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048696|gb|EDR60104.1| type III secretion apparatus protein YscR [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054164|gb|EDR63991.1| type III secretion apparatus protein YscR [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186700604|gb|ACC91232.1| Yop virulence translocation R [Yersinia pseudotuberculosis PB1/+] gi|229686735|gb|EEO78815.1| putative Yop secretion membrane protein [Yersinia pestis biovar Orientalis str. India 195] gi|229700131|gb|EEO88170.1| putative Yop secretion membrane protein [Yersinia pestis Pestoides A] gi|262363850|gb|ACY60570.1| needle complex export protein [Yersinia pestis D106004] gi|262364007|gb|ACY64344.1| needle complex export protein [Yersinia pestis D182038] gi|294352427|gb|ADE66484.1| needle complex export protein [Yersinia pestis Z176003] gi|317374480|gb|ADV16655.1| type III secretion inner membrane protein [Yersinia pestis] gi|321161344|gb|ADW67050.1| type III secretion apparatus protein YscR [Yersinia pestis Java 9] Length = 217 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 74/198 (37%), Positives = 123/198 (62%), Gaps = 16/198 (8%) Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116 +M T F +F +VFS+LR +G+ +PPN+ + LA+ ++ YVM+P + Q + Sbjct: 25 VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAP-----VGFATQDYLQ 79 Query: 117 NQITETTAIQRVAE-------PFWVFMRNNTREKDLSLFMDMAHS--SHRNTDITKNDHI 167 T I+ V + P+ +F++ + + ++ S F+D + D ++D + Sbjct: 80 ANEVSLTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSL 139 Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227 IL+P+F +SEL R+FEIGFLI LPF++ID++++ I++AMGMMM+ P +ISLPFK++ Sbjct: 140 --FILLPAFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISLPFKLLL 197 Query: 228 FVLIDGWSLLVENLVKSF 245 FVL+DGW+ L LV S+ Sbjct: 198 FVLLDGWTRLTHGLVISY 215 >gi|190574229|ref|YP_001972074.1| flagellar biosynthesis protein FliP [Stenotrophomonas maltophilia K279a] gi|194365647|ref|YP_002028257.1| flagellar biosynthesis protein FliP [Stenotrophomonas maltophilia R551-3] gi|190012151|emb|CAQ45774.1| putative flagellar biosynthetic protein [Stenotrophomonas maltophilia K279a] gi|194348451|gb|ACF51574.1| flagellar biosynthetic protein FliP [Stenotrophomonas maltophilia R551-3] Length = 259 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 88/207 (42%), Positives = 130/207 (62%), Gaps = 6/207 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++T + T +++ P +L+++T F R IIV +LR +G G P N V++ LALF+T VM Sbjct: 55 LQTLLLMTAITLIPSMLLVLTSFTRIIIVLGLLRQALGTGQTPSNQVLLGLALFLTAMVM 114 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-HSSHRN 158 PT D++ G+ P +N +I TA P FM RE DL F +A H ++ + Sbjct: 115 MPTWDKAWSTGMAPYLNGEIDFQTAWTLTTTPLRGFMLAQIRETDLMTFAGIAGHGTYAS 174 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 D I + +L+ SF+ SEL+ +FEIGFLI +PF+IID++VA+++M+MGMMML P Sbjct: 175 -----PDAIPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLVVASVLMSMGMMMLSPML 229 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 +S PFK++ FVL+DGW L V L SF Sbjct: 230 VSAPFKILLFVLVDGWVLTVGTLAASF 256 >gi|9663102|emb|CAC01114.1| FliP flagellar protein [Helicobacter pylori] Length = 160 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 68/156 (43%), Positives = 106/156 (67%), Gaps = 4/156 (2%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 + T+L +AP L++++T F R I+VFS LRT +G PP +++SL+L +TF++M P+L Sbjct: 9 ALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL 68 Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163 ++ + GI+P M+ +I+ T A ++ PF FM NTREKDL+LF + + + T Sbjct: 69 KKAYDTGIKPYMDKKISYTEAFEKSTLPFKEFMLKNTREKDLALFFRIRNLPNPKTP--- 125 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199 D + +LIP+FMISEL+ +F+IGFL+ LPFL+ID Sbjct: 126 -DEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVID 160 >gi|311232389|gb|ADP85243.1| flagellar biosynthetic protein FliP [Desulfovibrio vulgaris RCH1] Length = 232 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 85/202 (42%), Positives = 134/202 (66%), Gaps = 4/202 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T+LS+AP +++ VT F R IIVF +R +G+ ++PP+ V+ SLA+FMT +M+P Sbjct: 34 MLTVLSLAPAIMLTVTSFTRIIIVFHFVRQALGVQALPPSQVLASLAIFMTVVIMTPVGK 93 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + +QP + +I A+++ P FM +TREKDLS+F ++ + Sbjct: 94 EINDNALQPYLREEIGFNEALKKAEAPMRTFMFKHTREKDLSVF----YAVTKMEQPRSK 149 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D + +L ++ISEL+ F IGFLI +PFLI+DM++++I++AMGMMMLPP +S+PFK Sbjct: 150 DDVPTIMLAAGYVISELKTGFTIGFLIYIPFLILDMVISSILLAMGMMMLPPMMVSMPFK 209 Query: 225 VIFFVLIDGWSLLVENLVKSFI 246 ++ FV++DGW LLV +LV SF+ Sbjct: 210 LLLFVMVDGWGLLVGSLVNSFM 231 >gi|225552062|ref|ZP_03773002.1| flagellar biosynthetic protein FliP [Borrelia sp. SV1] gi|225371060|gb|EEH00490.1| flagellar biosynthetic protein FliP [Borrelia sp. SV1] Length = 254 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 76/199 (38%), Positives = 123/199 (61%), Gaps = 9/199 (4%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 +P L+++T F R IV +R + + PP +++ LALF+T + M PT + E Sbjct: 61 SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNSMYEQAY 120 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMR---NNTREKDLSLFMDMAHSSHRNTDITKN-DHI 167 PL ++I + P +FM ++ R +++ LFM M+ N D KN + Sbjct: 121 LPLKESKINFNEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSMS-----NYDRPKNFSEV 175 Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227 +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP ISLPFK+I Sbjct: 176 PTHVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLIL 235 Query: 228 FVLIDGWSLLVENLVKSFI 246 FV++DGW+L+ L+KSF+ Sbjct: 236 FVMVDGWTLITSGLIKSFM 254 >gi|153003617|ref|YP_001377942.1| type III secretion system protein [Anaeromyxobacter sp. Fw109-5] gi|152027190|gb|ABS24958.1| Yop virulence translocation R [Anaeromyxobacter sp. Fw109-5] Length = 223 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 70/189 (37%), Positives = 115/189 (60%), Gaps = 2/189 (1%) Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 M+T F + ++V SI R+ +G VPPN + LAL +T VM+P +R++ + Sbjct: 34 MLTSFLKIVVVLSIARSALGAPQVPPNTAVTGLALVLTALVMAPVGERAVAAMRAAPAGH 93 Query: 118 QITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176 + T A ++R ++P F+ R D + F+D+A R D + +L P+F Sbjct: 94 GVAGTLAQLERGSDPLRGFLLRFARADDRAAFVDVARR-LRGPDAAPPAERDLAVLAPAF 152 Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236 ++SELRR+F IGFL+ +PFL++D++V+ +++A+G+ L PTSI+LPFK++ FV +DGW L Sbjct: 153 VVSELRRAFTIGFLVFVPFLVVDLVVSNVLLALGLTQLSPTSIALPFKLLLFVAVDGWKL 212 Query: 237 LVENLVKSF 245 L L S+ Sbjct: 213 LARALALSY 221 >gi|304412524|ref|ZP_07394130.1| flagellar biosynthetic protein FliP [Shewanella baltica OS183] gi|307307183|ref|ZP_07586921.1| flagellar biosynthetic protein FliP [Shewanella baltica BA175] gi|304349166|gb|EFM13578.1| flagellar biosynthetic protein FliP [Shewanella baltica OS183] gi|306910422|gb|EFN40853.1| flagellar biosynthetic protein FliP [Shewanella baltica BA175] Length = 244 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 83/204 (40%), Positives = 128/204 (62%), Gaps = 5/204 (2%) Query: 43 FGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT 102 + T +S PI+L+M+T F R IIV +ILR +G+ PPN V++ +AL +T ++M P Sbjct: 44 LALMTAISFLPIMLMMLTSFTRIIIVLAILRQALGLQQSPPNRVLVGIALILTIFIMRPV 103 Query: 103 LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS-SHRNTDI 161 D+ + P +I A+ P FM TR DL + +A+ +H T Sbjct: 104 GDKIYKEAYLPYDQGKIELMEAVSIAKVPLTRFMLAQTRATDLEQMLKIANEPTHMKT-- 161 Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221 + + + +L+P+F++SEL+ +F+IGFL+ LPFL+ID++VA+++M+MGMMML P ISL Sbjct: 162 --AEEVPFFVLMPAFVLSELKTAFQIGFLLFLPFLVIDLVVASVLMSMGMMMLSPLIISL 219 Query: 222 PFKVIFFVLIDGWSLLVENLVKSF 245 PFK++ FVL+DGWS+ V L SF Sbjct: 220 PFKLMVFVLVDGWSMTVSTLTASF 243 >gi|226320576|ref|ZP_03796136.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 29805] gi|226233995|gb|EEH32716.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 29805] Length = 254 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 76/199 (38%), Positives = 123/199 (61%), Gaps = 9/199 (4%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 +P L+++T F R IV +R + + PP +++ LALF+T + M PT + E Sbjct: 61 SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNSIYEQAY 120 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMR---NNTREKDLSLFMDMAHSSHRNTDITKN-DHI 167 PL ++I + P +FM ++ R +++ LFM M+ N D KN + Sbjct: 121 LPLKESKINFNEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSMS-----NYDRPKNFSEV 175 Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227 +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP ISLPFK+I Sbjct: 176 PTHVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLIL 235 Query: 228 FVLIDGWSLLVENLVKSFI 246 FV++DGW+L+ L+KSF+ Sbjct: 236 FVMVDGWTLITSGLIKSFM 254 >gi|15594620|ref|NP_212409.1| flagellar biosynthesis protein FliP [Borrelia burgdorferi B31] gi|218249847|ref|YP_002374798.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi ZS7] gi|226321593|ref|ZP_03797119.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi Bol26] gi|2494561|sp|Q44763|FLIP_BORBU RecName: Full=Flagellar biosynthetic protein fliP gi|1165260|gb|AAA85599.1| FliP [Borrelia burgdorferi] gi|2688191|gb|AAC66673.1| flagellar biosynthesis protein (fliP) [Borrelia burgdorferi B31] gi|218165035|gb|ACK75096.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi ZS7] gi|226232782|gb|EEH31535.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi Bol26] gi|312149165|gb|ADQ29236.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi N40] Length = 254 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 76/199 (38%), Positives = 123/199 (61%), Gaps = 9/199 (4%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 +P L+++T F R IV +R + + PP +++ LALF+T + M PT + E Sbjct: 61 SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNSIYEQAY 120 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMR---NNTREKDLSLFMDMAHSSHRNTDITKN-DHI 167 PL ++I + P +FM ++ R +++ LFM M+ N D KN + Sbjct: 121 LPLKESKINFNEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSMS-----NYDRPKNFSEV 175 Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227 +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP ISLPFK+I Sbjct: 176 PTHVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLIL 235 Query: 228 FVLIDGWSLLVENLVKSFI 246 FV++DGW+L+ L+KSF+ Sbjct: 236 FVMVDGWTLITSGLIKSFM 254 >gi|329897649|ref|ZP_08272173.1| Flagellar biosynthesis protein fliP [gamma proteobacterium IMCC3088] gi|328921098|gb|EGG28507.1| Flagellar biosynthesis protein fliP [gamma proteobacterium IMCC3088] Length = 250 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 91/208 (43%), Positives = 137/208 (65%), Gaps = 7/208 (3%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ G+ TIL++ P LL+M+T F R IIV S+LR MG PPN V++ LALF+T ++M Sbjct: 45 LQLLGLMTILTLLPSLLLMMTSFTRIIIVLSLLRQAMGTAQTPPNQVLLGLALFLTIFIM 104 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +P E IQP +N++I A+ R P F+ TRE D+ F+ S N Sbjct: 105 TPVATVVNEEAIQPYVNSEIGLEDALLRAQVPIKTFLLQQTRESDIQTFI-----SLLND 159 Query: 160 DITKN--DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 D+ N + + IL+P+F+ SEL+ +F IGF++ +PF++ID++VA+I+M+MGMMML P Sbjct: 160 DVQYNTPNDLPLNILVPAFIASELKSAFTIGFMLYIPFVVIDLVVASILMSMGMMMLSPM 219 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLPFK++ FV++DGW+LL+ +L SF Sbjct: 220 MISLPFKLLLFVMVDGWNLLIGSLAGSF 247 >gi|9663072|emb|CAC01101.1| FliP flagellar protein [Helicobacter pylori] Length = 160 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 68/156 (43%), Positives = 106/156 (67%), Gaps = 4/156 (2%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 + T+L +AP L++++T F R I+VFS LRT +G PP +++SL+L +TF++M P+L Sbjct: 9 ALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL 68 Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163 ++ + GI+P M+ +I+ T A ++ PF FM NTREKDL+LF + + + T Sbjct: 69 KKAYDTGIKPYMDKKISYTEAFEKSTLPFKEFMLKNTREKDLALFFRIRNLPNPKTP--- 125 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199 D + +LIP+FMISEL+ +F+IGFL+ LPFL+ID Sbjct: 126 -DDVSLSVLIPAFMISELKTAFQIGFLLYLPFLVID 160 >gi|107025882|ref|YP_623393.1| type III secretion system protein [Burkholderia cenocepacia AU 1054] gi|116692934|ref|YP_838467.1| type III secretion system protein [Burkholderia cenocepacia HI2424] gi|170737801|ref|YP_001779061.1| Yop virulence translocation R [Burkholderia cenocepacia MC0-3] gi|206563883|ref|YP_002234646.1| type III secretion system protein [Burkholderia cenocepacia J2315] gi|254250206|ref|ZP_04943526.1| Yop virulence translocation protein R [Burkholderia cenocepacia PC184] gi|18092662|gb|AAK50140.1| BcscR [Burkholderia cenocepacia] gi|105895256|gb|ABF78420.1| Yop virulence translocation R [Burkholderia cenocepacia AU 1054] gi|116650934|gb|ABK11574.1| Yop virulence translocation R [Burkholderia cenocepacia HI2424] gi|124876707|gb|EAY66697.1| Yop virulence translocation protein R [Burkholderia cenocepacia PC184] gi|169819989|gb|ACA94571.1| Yop virulence translocation R [Burkholderia cenocepacia MC0-3] gi|198039923|emb|CAR55900.1| type III secretion system protein [Burkholderia cenocepacia J2315] Length = 224 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 79/215 (36%), Positives = 136/215 (63%), Gaps = 13/215 (6%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V + L IAP +MVT + + ++V +LR+ +G+ VPPNLV+ +AL ++ ++M Sbjct: 8 VALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIM 67 Query: 100 SPTLDRSIEMGIQPL---MNNQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMA 152 +P + SI +Q + Q++ T+ I +A+ P F+ ++TR++D F+ A Sbjct: 68 AP-VGMSIRDALQARHFDASGQLS-TSDIGALADAALPPIKDFLVSHTRQRDREFFVRTA 125 Query: 153 HS--SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 S D K+D + +L+PSF ++EL ++F+IGF+I + F+++D++VA I++A+G Sbjct: 126 TSVWPKNRADGIKDD--DLLVLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANILLALG 183 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M M+ PT+IS+PFK++ FV +DGWSLLV LV S+ Sbjct: 184 MQMISPTTISVPFKLLLFVALDGWSLLVHGLVLSY 218 >gi|9663098|emb|CAC01112.1| FliP flagellar protein [Helicobacter pylori] Length = 160 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 68/156 (43%), Positives = 106/156 (67%), Gaps = 4/156 (2%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 + T+L +AP L++++T F R I+VFS LRT +G PP +++SL+L +TF++M P+L Sbjct: 9 ALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL 68 Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163 ++ + GI+P M+ +I+ A ++ A PF FM NTREKDL+LF + + + T Sbjct: 69 KKAYDTGIKPYMDKKISYIEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTP--- 125 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199 D + +LIP+FMISEL+ +F+IGFL+ LPFL+ID Sbjct: 126 -DEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVID 160 >gi|217077267|ref|YP_002334985.1| flagellar biosynthesis protein FliP [Thermosipho africanus TCF52B] gi|217037122|gb|ACJ75644.1| flagellar biosynthetic protein FliP [Thermosipho africanus TCF52B] Length = 251 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 74/196 (37%), Positives = 122/196 (62%), Gaps = 5/196 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +LI+ T F R IIVFS LR +G PPN ++I LALF+TF++M P + I Sbjct: 56 APSILILFTSFTRIIIVFSFLRNALGTRQTPPNQILIGLALFLTFFIMQPVWNDIYNNAI 115 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTR--EKDLSLFMDMAHSSHRNTDITKNDHIEY 169 P +N++I R + FM + + ++FM + + +I + Sbjct: 116 TPYLNSEIGYEELFSRSMDRLRTFMITELKIHHNEDNVFM---LADNVGKEIDSVEEAPN 172 Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229 +LIP+F+I EL F++G L+ +PF+++DM+VA+I++++GM+M+PP +SLPFK++ FV Sbjct: 173 SVLIPAFVIGELEIGFKMGILLYIPFIVMDMVVASILLSLGMIMIPPVLVSLPFKILLFV 232 Query: 230 LIDGWSLLVENLVKSF 245 L++GW +L+ +L+KSF Sbjct: 233 LVNGWDMLIGSLIKSF 248 >gi|54124952|gb|AAV30220.1| AscR [Aeromonas hydrophila] Length = 217 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 127/206 (61%), Gaps = 12/206 (5%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 +L++ P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ YVM+P Sbjct: 15 ALLALLPFIAVMATSFVKLAVVFSLLRNALGVQQIPPNMAMYGLAIILSIYVMAP----- 69 Query: 107 IEMGIQPLMNNQ---ITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 + Q ++ +T++ ++++ + P+ F++ + ++ + F+D + Sbjct: 70 VGFATQGYLHQNEVSLTKSESVEKFLDEGMAPYRAFLKKQIKPREHAFFIDSTKQLWPSE 129 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + IL+P+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P +I Sbjct: 130 YADRLEPDSLLILLPAFTVSELSRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTI 189 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW+ L LV S+ Sbjct: 190 SLPFKLLLFVLLDGWARLTHGLVTSY 215 >gi|254254345|ref|ZP_04947662.1| Type III secretory pathway component EscR [Burkholderia dolosa AUO158] gi|124898990|gb|EAY70833.1| Type III secretory pathway component EscR [Burkholderia dolosa AUO158] Length = 224 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 78/215 (36%), Positives = 135/215 (62%), Gaps = 13/215 (6%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V + L IAP +MVT + + ++V +LR+ +G+ VPPNLV+ +AL ++ ++M Sbjct: 8 VALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIM 67 Query: 100 SPTLDRSIEMGIQPL---MNNQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMA 152 +P + SI +Q + Q++ T + +A+ P F+ ++TR++D F+ A Sbjct: 68 AP-VGMSIRDALQARHFDASGQLS-TADVGALADAALPPIKEFLVSHTRQRDREFFVRTA 125 Query: 153 HS--SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 S + D K+D + +L+PSF ++EL ++F IGF+I + F+++D++VA I++A+G Sbjct: 126 TSVWPNNRADAIKDD--DLLVLVPSFTLAELTKAFHIGFVIYIVFIVVDLLVANILLALG 183 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M M+ PT+IS+PFK++ FV +DGWSLLV LV S+ Sbjct: 184 MQMIAPTTISVPFKLLLFVALDGWSLLVHGLVLSY 218 >gi|161503487|ref|YP_001570599.1| type III secretion system protein [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864834|gb|ABX21457.1| hypothetical protein SARI_01563 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 215 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 78/212 (36%), Positives = 128/212 (60%), Gaps = 11/212 (5%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ GI +LSI P++++M T F + +VFSILR +G+ VPPN+ + LAL ++ ++M Sbjct: 8 LQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIM 67 Query: 100 SPTL----DR--SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 PTL +R +++ P ++ + P+ F++ N+ EK+ S F ++ Sbjct: 68 GPTLLAVKERWHPVQVADAPFWMSEWDS-----KALAPYRQFLQKNSEEKEASYFRNLIK 122 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 + K ILIP+F +S+L ++F IG LI LPFL ID++++ I++AMGMMM Sbjct: 123 RTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMM 182 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 + P +ISLPFK++ F+L GW L + LV+SF Sbjct: 183 VSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF 214 >gi|161520303|ref|YP_001583730.1| type III secretion system protein [Burkholderia multivorans ATCC 17616] gi|189353518|ref|YP_001949145.1| type III secretion system protein [Burkholderia multivorans ATCC 17616] gi|160344353|gb|ABX17438.1| Yop virulence translocation R [Burkholderia multivorans ATCC 17616] gi|189337540|dbj|BAG46609.1| type III secretion protein SctR [Burkholderia multivorans ATCC 17616] Length = 224 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 78/215 (36%), Positives = 135/215 (62%), Gaps = 13/215 (6%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V + L IAP +MVT + + ++V +LR+ +G+ VPPNLV+ +AL ++ ++M Sbjct: 8 VALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGVQQVPPNLVLNGIALILSLFIM 67 Query: 100 SPTLDRSIEMGIQPL---MNNQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMA 152 +P + SI +Q + Q++ T + +A+ P F+ ++TR++D F+ A Sbjct: 68 AP-VGMSIRDALQARHFDASGQLS-TADVGALADAALPPIKDFLVSHTRQRDREFFVRTA 125 Query: 153 HS--SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 S D K+D + +L+PSF ++EL ++F+IGF+I + F+++D++VA I++A+G Sbjct: 126 TSVWPKNRADGIKDD--DLLVLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANILLALG 183 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M M+ PT+IS+PFK++ FV +DGWSLLV LV S+ Sbjct: 184 MQMISPTTISVPFKLLLFVALDGWSLLVHGLVLSY 218 >gi|195941371|ref|ZP_03086753.1| flagellar biosynthesis protein FliP [Borrelia burgdorferi 80a] gi|224533102|ref|ZP_03673702.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi WI91-23] gi|224511829|gb|EEF82230.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi WI91-23] Length = 254 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 76/199 (38%), Positives = 123/199 (61%), Gaps = 9/199 (4%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 +P L+++T F R IV +R + + PP +++ LALF+T + M PT + E Sbjct: 61 SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNSIYEQAY 120 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMR---NNTREKDLSLFMDMAHSSHRNTDITKN-DHI 167 PL ++I + P +FM ++ R +++ LFM M+ N D KN + Sbjct: 121 LPLKESKINFNEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSMS-----NYDRPKNFSEV 175 Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227 +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP ISLPFK+I Sbjct: 176 PTHVLIVAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLIL 235 Query: 228 FVLIDGWSLLVENLVKSFI 246 FV++DGW+L+ L+KSF+ Sbjct: 236 FVMVDGWTLITSGLIKSFM 254 >gi|16764769|ref|NP_460384.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56413610|ref|YP_150685.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62180010|ref|YP_216427.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161614164|ref|YP_001588129.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167551612|ref|ZP_02345366.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167995053|ref|ZP_02576143.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168233614|ref|ZP_02658672.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168239303|ref|ZP_02664361.1| type III secretion apparatus protein, YscR/HrcR family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168240932|ref|ZP_02665864.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263749|ref|ZP_02685722.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463171|ref|ZP_02697102.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194448961|ref|YP_002045422.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472648|ref|ZP_03078632.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736899|ref|YP_002114432.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197266014|ref|ZP_03166088.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197362534|ref|YP_002142171.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198242436|ref|YP_002215713.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200390900|ref|ZP_03217511.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204927846|ref|ZP_03219047.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|224584070|ref|YP_002637868.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238913178|ref|ZP_04657015.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|2494570|sp|P74890|YSCR_SALTY RecName: Full=Virulence protein yscR gi|1526985|emb|CAA68199.1| secretion system apparatus, SsaR [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16419940|gb|AAL20343.1| secretion system apparatus protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56127867|gb|AAV77373.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62127643|gb|AAX65346.1| Secretion system apparatus SsaR [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161363528|gb|ABX67296.1| hypothetical protein SPAB_01906 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194407265|gb|ACF67484.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194459012|gb|EDX47851.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712401|gb|ACF91622.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195634326|gb|EDX52678.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094011|emb|CAR59507.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197244269|gb|EDY26889.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197288009|gb|EDY27396.1| type III secretion apparatus protein, YscR/HrcR family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197936952|gb|ACH74285.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603345|gb|EDZ01891.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204323188|gb|EDZ08384.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205323559|gb|EDZ11398.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327197|gb|EDZ13961.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332323|gb|EDZ19087.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205339292|gb|EDZ26056.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205347547|gb|EDZ34178.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224468597|gb|ACN46427.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261246625|emb|CBG24435.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993308|gb|ACY88193.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157954|emb|CBW17449.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912404|dbj|BAJ36378.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224041|gb|EFX49104.1| Type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322615097|gb|EFY12020.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619938|gb|EFY16811.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622250|gb|EFY19095.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627772|gb|EFY24562.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632883|gb|EFY29627.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636626|gb|EFY33329.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641181|gb|EFY37823.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644884|gb|EFY41417.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650280|gb|EFY46694.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655853|gb|EFY52155.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660179|gb|EFY56418.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665255|gb|EFY61443.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669512|gb|EFY65660.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673438|gb|EFY69540.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677366|gb|EFY73430.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679971|gb|EFY76010.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687443|gb|EFY83415.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322714477|gb|EFZ06048.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323129691|gb|ADX17121.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323194104|gb|EFZ79303.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198585|gb|EFZ83686.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202911|gb|EFZ87946.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208631|gb|EFZ93569.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211167|gb|EFZ96014.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217608|gb|EGA02323.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323218957|gb|EGA03467.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323223787|gb|EGA08091.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229410|gb|EGA13533.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232633|gb|EGA16729.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240329|gb|EGA24373.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242682|gb|EGA26703.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323245893|gb|EGA29881.1| type III secretion system protein YscR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252457|gb|EGA36304.1| type III secretion system protein YscR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256476|gb|EGA40209.1| type III secretion system protein YscR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260039|gb|EGA43664.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323271479|gb|EGA54900.1| type III secretion system protein YscR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326623460|gb|EGE29805.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332988306|gb|AEF07289.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 215 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 77/212 (36%), Positives = 128/212 (60%), Gaps = 11/212 (5%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ GI +LSI P++++M T F + +VFSILR +G+ VPPN+ + LAL ++ ++M Sbjct: 8 LQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIM 67 Query: 100 SPTL----DR--SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 PTL +R +++ P ++ + P+ F++ N+ EK+ + F ++ Sbjct: 68 GPTLLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLIK 122 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 + K ILIP+F +S+L ++F IG LI LPFL ID++++ I++AMGMMM Sbjct: 123 RTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMM 182 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 + P +ISLPFK++ F+L GW L + LV+SF Sbjct: 183 VSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF 214 >gi|15596890|ref|NP_250384.1| type III secretion system protein [Pseudomonas aeruginosa PAO1] gi|116049643|ref|YP_791552.1| type III secretion system protein [Pseudomonas aeruginosa UCBPP-PA14] gi|254234792|ref|ZP_04928115.1| translocation protein in type III secretion [Pseudomonas aeruginosa C3719] gi|254240038|ref|ZP_04933360.1| translocation protein in type III secretion [Pseudomonas aeruginosa 2192] gi|313110379|ref|ZP_07796268.1| LOW QUALITY PROTEIN: translocation protein in type III secretion [Pseudomonas aeruginosa 39016] gi|9947666|gb|AAG05082.1|AE004596_8 translocation protein in type III secretion [Pseudomonas aeruginosa PAO1] gi|115584864|gb|ABJ10879.1| translocation protein in type III secretion [Pseudomonas aeruginosa UCBPP-PA14] gi|126166723|gb|EAZ52234.1| translocation protein in type III secretion [Pseudomonas aeruginosa C3719] gi|126193416|gb|EAZ57479.1| translocation protein in type III secretion [Pseudomonas aeruginosa 2192] gi|310882770|gb|EFQ41364.1| LOW QUALITY PROTEIN: translocation protein in type III secretion [Pseudomonas aeruginosa 39016] Length = 217 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 72/200 (36%), Positives = 124/200 (62%), Gaps = 12/200 (6%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ YVM+P + + Sbjct: 21 PFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAP-----VGFATR 75 Query: 113 PLMNNQ---ITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165 + N ++++ +++R + P+ F++ +E++ + FM+ + + D Sbjct: 76 DYLRNHDVSLSDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLD 135 Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225 IL+P+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P +ISLPFK+ Sbjct: 136 PDSLLILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISLPFKL 195 Query: 226 IFFVLIDGWSLLVENLVKSF 245 + FVL+DGW+ L LV S+ Sbjct: 196 LLFVLLDGWARLTHGLVISY 215 >gi|221209604|ref|ZP_03582585.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia multivorans CGD1] gi|221170292|gb|EEE02758.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia multivorans CGD1] Length = 224 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 75/218 (34%), Positives = 132/218 (60%), Gaps = 19/218 (8%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V + L IAP +MVT + + ++V +LR+ +G+ VPPNLV+ +AL ++ ++M Sbjct: 8 VALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIM 67 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAE----------PFWVFMRNNTREKDLSLFM 149 +P + M I+ + + +T+ A+ P F+ ++TR++D F+ Sbjct: 68 AP-----VGMSIRDALQARHFDTSGQLSTADVGVLADAALPPIKDFLVSHTRQRDRDFFV 122 Query: 150 DMAHS--SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 A S D ++D + +L+PSF ++EL ++F+IGF+I + F+++D++VA I++ Sbjct: 123 RTATSVWPKNRADAIRDD--DLLVLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANILL 180 Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 A+GM M+ PT+IS+PFK++ FV +DGWSLLV LV S+ Sbjct: 181 ALGMQMISPTTISVPFKLLLFVALDGWSLLVHGLVLSY 218 >gi|325920564|ref|ZP_08182486.1| flagellar biosynthetic protein FliP [Xanthomonas gardneri ATCC 19865] gi|325548957|gb|EGD19889.1| flagellar biosynthetic protein FliP [Xanthomonas gardneri ATCC 19865] Length = 279 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 84/206 (40%), Positives = 126/206 (61%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++T + T +++ P +L+++T F R IV +LR +G G P N V++ L++F+T VM Sbjct: 75 LQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQTPSNQVLLGLSMFLTALVM 134 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P + G+ P +NNQI +TA +P FM RE DL F MA Sbjct: 135 MPVWQKMWGAGLSPYLNNQIDFSTAWTLTTQPLRAFMLAQIRETDLMTFAGMAGDGKY-- 192 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++VA+++M+MGMMML P I Sbjct: 193 --AGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLVVASVLMSMGMMMLSPMLI 250 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 S PFK++ F+L+DGW L+V L SF Sbjct: 251 SAPFKILLFILVDGWVLVVGTLAASF 276 >gi|216264896|ref|ZP_03436888.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 156a] gi|221217753|ref|ZP_03589221.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 72a] gi|223888889|ref|ZP_03623480.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 64b] gi|224533771|ref|ZP_03674359.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi CA-11.2a] gi|225549012|ref|ZP_03769987.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 94a] gi|225550173|ref|ZP_03771133.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 118a] gi|215981369|gb|EEC22176.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 156a] gi|221192430|gb|EEE18649.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 72a] gi|223885705|gb|EEF56804.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 64b] gi|224513064|gb|EEF83427.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi CA-11.2a] gi|225369285|gb|EEG98738.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 118a] gi|225370238|gb|EEG99676.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 94a] gi|312148186|gb|ADQ30845.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi JD1] Length = 254 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 75/199 (37%), Positives = 123/199 (61%), Gaps = 9/199 (4%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 +P L+++T F R IV +R + + PP +++ LALF+T + M PT + E Sbjct: 61 SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNSIYEQAY 120 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMR---NNTREKDLSLFMDMAHSSHRNTDITKN-DHI 167 PL ++I + P +FM ++ R +++ LFM M+ N D +N + Sbjct: 121 LPLKESKINFNEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSMS-----NYDRPRNFSEV 175 Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227 +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP ISLPFK+I Sbjct: 176 PTHVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLIL 235 Query: 228 FVLIDGWSLLVENLVKSFI 246 FV++DGW+L+ L+KSF+ Sbjct: 236 FVMVDGWTLITSGLIKSFM 254 >gi|262284525|gb|ACY41062.1| VscR [Vibrio alginolyticus] Length = 216 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 73/203 (35%), Positives = 126/203 (62%), Gaps = 6/203 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP----T 102 +L++ P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ ++M+P T Sbjct: 15 ALLALIPFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFET 74 Query: 103 LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT 162 D + I + + + I+ +P+ F++ + RE ++ F D A + + Sbjct: 75 YDYVKQHDIS--LEDSASVEGLIESGLQPYREFLKKHIRETEVIFFTDAARTLWPQKYVD 132 Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222 + + +L+P+F +SEL R+FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ P +ISLP Sbjct: 133 RLESDSLLLLLPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISLP 192 Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245 FK++ FVL+DGW+ L LV S+ Sbjct: 193 FKLLLFVLLDGWTKLTHGLVLSY 215 >gi|197248361|ref|YP_002146623.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197212064|gb|ACH49461.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 215 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 77/212 (36%), Positives = 128/212 (60%), Gaps = 11/212 (5%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ GI +LSI P++++M T F + +VFSILR +G+ VPPN+ + LAL ++ ++M Sbjct: 8 LQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIM 67 Query: 100 SPTL----DR--SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 PTL +R +++ P ++ + P+ F++ N+ EK+ + F ++ Sbjct: 68 GPTLLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLIK 122 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 + K ILIP+F +S+L ++F IG LI LPFL ID++++ I++AMGMMM Sbjct: 123 RTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMM 182 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 + P +ISLPFK++ F+L GW L + LV+SF Sbjct: 183 VSPMTISLPFKLLIFLLAGGWDLTLAKLVQSF 214 >gi|134294005|ref|YP_001117741.1| type III secretion system protein [Burkholderia vietnamiensis G4] gi|134137162|gb|ABO58276.1| Yop virulence translocation R [Burkholderia vietnamiensis G4] Length = 224 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 78/214 (36%), Positives = 133/214 (62%), Gaps = 11/214 (5%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V + L IAP +MVT + + ++V +LR+ +G+ VPPNLV+ +AL ++ ++M Sbjct: 8 VALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIM 67 Query: 100 SPTLDRSIEMGIQPLMNNQITE--TTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAH 153 +P + SI +Q + + T I +A+ P F+ ++TR++D F+ A Sbjct: 68 AP-VGMSIRDALQARHFDAAGQLSTADIGVLADAALPPIKDFLVSHTRQRDREFFVRTAT 126 Query: 154 S--SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 S D K+D + +L+PSF ++EL ++F+IGF+I + F+++D++VA I++A+GM Sbjct: 127 SVWPKNRADGIKDD--DLLVLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANILLALGM 184 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+ PT+IS+PFK++ FV +DGWSLLV LV S+ Sbjct: 185 QMISPTTISVPFKLLLFVALDGWSLLVHGLVLSY 218 >gi|296389923|ref|ZP_06879398.1| type III secretion system protein [Pseudomonas aeruginosa PAb1] Length = 219 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 72/200 (36%), Positives = 124/200 (62%), Gaps = 12/200 (6%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ YVM+P + + Sbjct: 21 PFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAP-----VGFATR 75 Query: 113 PLMNNQ---ITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165 + N ++++ +++R + P+ F++ +E++ + FM+ + + D Sbjct: 76 DYLRNHDVSLSDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLD 135 Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225 IL+P+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P +ISLPFK+ Sbjct: 136 PDSLLILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISLPFKL 195 Query: 226 IFFVLIDGWSLLVENLVKSF 245 + FVL+DGW+ L LV S+ Sbjct: 196 LLFVLLDGWARLTHGLVISY 215 >gi|49078404|gb|AAT49781.1| PA1693 [synthetic construct] Length = 218 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 72/200 (36%), Positives = 124/200 (62%), Gaps = 12/200 (6%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ YVM+P + + Sbjct: 21 PFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAP-----VGFATR 75 Query: 113 PLMNNQ---ITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165 + N ++++ +++R + P+ F++ +E++ + FM+ + + D Sbjct: 76 DYLRNHDVSLSDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLD 135 Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225 IL+P+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P +ISLPFK+ Sbjct: 136 PDSLLILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISLPFKL 195 Query: 226 IFFVLIDGWSLLVENLVKSF 245 + FVL+DGW+ L LV S+ Sbjct: 196 LLFVLLDGWARLTHGLVISY 215 >gi|153832450|ref|ZP_01985117.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio harveyi HY01] gi|156974015|ref|YP_001444922.1| type III secretion system protein [Vibrio harveyi ATCC BAA-1116] gi|41834184|gb|AAS13322.1| VscR [Vibrio harveyi] gi|148871245|gb|EDL70117.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio harveyi HY01] gi|156525609|gb|ABU70695.1| hypothetical protein VIBHAR_01726 [Vibrio harveyi ATCC BAA-1116] Length = 216 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 72/201 (35%), Positives = 127/201 (63%), Gaps = 2/201 (0%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 +L++ P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ ++M+P + Sbjct: 15 ALLALIPFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFET 74 Query: 107 IEMGIQPLMNNQITETTA--IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + Q ++ + +E+ I+ +P+ F++ + RE + F D A + + + Sbjct: 75 YDYVTQHEISLEDSESIEGLIESGLQPYREFLKKHIRETESVFFTDAARTLWPQKYVDRL 134 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + +L+P+F +SEL R+FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK Sbjct: 135 ESDSLLLLLPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISLPFK 194 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW+ L LV S+ Sbjct: 195 LLLFVLLDGWTKLTHGLVLSY 215 >gi|320538198|ref|ZP_08038093.1| flagellar biosynthetic protein FliP [Treponema phagedenis F0421] gi|320145015|gb|EFW36736.1| flagellar biosynthetic protein FliP [Treponema phagedenis F0421] Length = 273 Score = 142 bits (359), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 79/200 (39%), Positives = 120/200 (60%), Gaps = 6/200 (3%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108 ++IAP LL+++T F R IV ++ + + VPP V+ +ALF+T ++M P + Sbjct: 78 IAIAPSLLLLMTSFLRISIVLDFIKRALSLQQVPPTQVLNGIALFLTLFIMWPVFNEVYT 137 Query: 109 MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD--LSLFMDMAHSSHRNTDITKNDH 166 +P+ + +I TA +P +FM ++L M MA NT H Sbjct: 138 NSFKPMADGEINIETAYTEAEKPIRLFMYKQMAHDSSYITLCMSMAKLPKPNTLADVPTH 197 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 I LIP+F++ EL +F+IG + LPF+IIDM+VA+I+M+MGM+MLPP IS+PFK+I Sbjct: 198 I----LIPAFILHELTIAFQIGIFLYLPFIIIDMVVASILMSMGMIMLPPVQISMPFKLI 253 Query: 227 FFVLIDGWSLLVENLVKSFI 246 FVL+DGW+LL+ L SF+ Sbjct: 254 LFVLVDGWNLLIGQLFYSFL 273 >gi|269105051|ref|ZP_06157746.1| yop virulence translocation protein R [Photobacterium damselae subsp. damselae CIP 102761] gi|268160686|gb|EEZ39184.1| yop virulence translocation protein R [Photobacterium damselae subsp. damselae CIP 102761] Length = 216 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 72/201 (35%), Positives = 127/201 (63%), Gaps = 2/201 (0%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 +L++ P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ ++M+P + Sbjct: 15 ALLALIPFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMAMYGLAIILSIFIMAPVGFET 74 Query: 107 IEMGIQPLMNNQITETTA--IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + Q ++ + +E+ I+ +P+ F++ + RE + F D A + + + Sbjct: 75 YDYVTQHEISLEDSESIEGLIESGLQPYREFLKKHIRETESVFFTDAARTLWPQKYVDRL 134 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + +L+P+F +SEL R+FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK Sbjct: 135 ESDSLLLLLPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISLPFK 194 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW+ L LV S+ Sbjct: 195 LLLFVLLDGWTKLTHGLVLSY 215 >gi|115358964|ref|YP_776102.1| type III secretion system protein [Burkholderia ambifaria AMMD] gi|170704157|ref|ZP_02894758.1| Yop virulence translocation R [Burkholderia ambifaria IOP40-10] gi|171323089|ref|ZP_02911721.1| Yop virulence translocation R [Burkholderia ambifaria MEX-5] gi|172063756|ref|YP_001811407.1| Yop virulence translocation R [Burkholderia ambifaria MC40-6] gi|115284252|gb|ABI89768.1| Yop virulence translocation R [Burkholderia ambifaria AMMD] gi|170130935|gb|EDS99661.1| Yop virulence translocation R [Burkholderia ambifaria IOP40-10] gi|171091518|gb|EDT37148.1| Yop virulence translocation R [Burkholderia ambifaria MEX-5] gi|171996273|gb|ACB67191.1| Yop virulence translocation R [Burkholderia ambifaria MC40-6] Length = 224 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 79/215 (36%), Positives = 136/215 (63%), Gaps = 13/215 (6%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V + L IAP +MVT + + ++V +LR+ +G+ VPPNLV+ +AL ++ ++M Sbjct: 8 VALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIM 67 Query: 100 SPTLDRSIEMGIQPL---MNNQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMA 152 +P + SI +Q + Q++ T+ I +A+ P F+ ++TR++D F+ A Sbjct: 68 AP-VGMSIRDALQSRHFDASGQLS-TSDIGVLADAALPPIKDFLVSHTRQRDREFFVRTA 125 Query: 153 HS--SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 S D K+D + +L+PSF ++EL ++F+IGF+I + F+++D++VA I++A+G Sbjct: 126 TSVWPKNRADGIKDD--DLLVLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANILLALG 183 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M M+ PT+IS+PFK++ FV +DGWSLLV LV S+ Sbjct: 184 MQMISPTTISVPFKLLLFVALDGWSLLVHGLVLSY 218 >gi|91795011|ref|YP_564662.1| flagellar biosynthesis protein FliP [Shewanella denitrificans OS217] gi|91717013|gb|ABE56939.1| flagellar biosynthetic protein FliP [Shewanella denitrificans OS217] Length = 243 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 84/203 (41%), Positives = 126/203 (62%), Gaps = 4/203 (1%) Query: 43 FGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT 102 + T LS P +L+M+T F R ++V +ILR +G+ PPN V+I +AL +T ++M P Sbjct: 44 LALMTALSFLPAMLMMLTSFTRIVVVLAILRQALGLQQSPPNKVLIGIALVLTLFIMRPV 103 Query: 103 LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT 162 D + P +I AI P FM TRE DL M ++ D+T Sbjct: 104 GDSIYKEAYLPYDQGKIELMAAIDIAKVPLSQFMLAQTRETDLE---QMLKIANEPIDLT 160 Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222 + I + +L+P+F++SEL+ +F+IGFL+ LPFL+ID++VA+++M+MGMMML P ISLP Sbjct: 161 PAE-IPFLVLMPAFVLSELKTAFQIGFLLFLPFLVIDLVVASVLMSMGMMMLSPLIISLP 219 Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245 FK++ FVL+DGW++ V L SF Sbjct: 220 FKLMIFVLVDGWAMTVSTLTASF 242 >gi|257457603|ref|ZP_05622770.1| flagellar biosynthetic protein FliP [Treponema vincentii ATCC 35580] gi|257444989|gb|EEV20065.1| flagellar biosynthetic protein FliP [Treponema vincentii ATCC 35580] Length = 269 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 77/197 (39%), Positives = 117/197 (59%), Gaps = 6/197 (3%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +L+++T F R I ++ + + VPP V+ +ALF+T ++M PT + Sbjct: 77 APSILLLMTSFLRLSIALDFIKRALSLQQVPPTQVLNGIALFLTIFIMWPTFTEIYDKSF 136 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTRE--KDLSLFMDMAHSSHRNTDITKNDHIEY 169 +P+ + QI TA +P +FM + L M +A NT H+ Sbjct: 137 KPMADGQINIETAYTEAEKPLRLFMYKQMAHDPSHIRLCMSLARMDKPNTLADVPTHV-- 194 Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229 LIP+F++ EL +F+IG + LPF+IIDM+VA+I+M+MGM+MLPP IS+PFK+I FV Sbjct: 195 --LIPAFILHELTVAFQIGIFLYLPFIIIDMVVASILMSMGMIMLPPVQISMPFKLILFV 252 Query: 230 LIDGWSLLVENLVKSFI 246 L+DGW+LLV L +SF+ Sbjct: 253 LVDGWNLLVGQLFQSFL 269 >gi|238752375|ref|ZP_04613853.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia rohdei ATCC 43380] gi|238709416|gb|EEQ01656.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia rohdei ATCC 43380] Length = 216 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 80/195 (41%), Positives = 122/195 (62%), Gaps = 6/195 (3%) Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRSIEMGIQPL 114 ++M T F + IVFS+LR +G+ VPPN+ I LAL +T ++M+P LD + +PL Sbjct: 24 MVMGTSFLKLSIVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVHARLQDEPL 83 Query: 115 MNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHSS--HRNTDITKNDHIEYRI 171 N I A EP+ F++ NT + F D+ + R D K++ + I Sbjct: 84 PNEIGALLHHIDEHALEPYRDFLQRNTDVEQAKFFNDIVQTKWPERYRDTIKSNSL--LI 141 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 L+P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK++ F+LI Sbjct: 142 LMPAFTLSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMVSPITISLPFKLLIFILI 201 Query: 232 DGWSLLVENLVKSFI 246 DGW LL+ LV S++ Sbjct: 202 DGWGLLLGQLVGSYL 216 >gi|269963170|ref|ZP_06177505.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832134|gb|EEZ86258.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 216 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 72/201 (35%), Positives = 127/201 (63%), Gaps = 2/201 (0%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 +L++ P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ ++M+P + Sbjct: 15 ALLALIPFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFET 74 Query: 107 IEMGIQPLMNNQITETTA--IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + Q ++ + +E+ I+ +P+ F++ + RE + F D A + + + Sbjct: 75 YDYVTQHEISLEDSESIEGLIESGLQPYREFLKTHIRETESVFFTDAARTLWPQKYVDRL 134 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + +L+P+F +SEL R+FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK Sbjct: 135 ESDSLLLLLPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISLPFK 194 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW+ L LV S+ Sbjct: 195 LLLFVLLDGWTKLTHGLVLSY 215 >gi|107101125|ref|ZP_01365043.1| hypothetical protein PaerPA_01002157 [Pseudomonas aeruginosa PACS2] Length = 217 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 72/200 (36%), Positives = 123/200 (61%), Gaps = 12/200 (6%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ YVM+P + + Sbjct: 21 PFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAP-----VGFATR 75 Query: 113 PLMNNQ---ITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165 + N + ++ +++R + P+ F++ +E++ + FM+ + + D Sbjct: 76 DYLRNHDVSLNDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLD 135 Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225 IL+P+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P +ISLPFK+ Sbjct: 136 PDSLLILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISLPFKL 195 Query: 226 IFFVLIDGWSLLVENLVKSF 245 + FVL+DGW+ L LV S+ Sbjct: 196 LLFVLLDGWARLTHGLVISY 215 >gi|168822289|ref|ZP_02834289.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194445968|ref|YP_002040671.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|205352865|ref|YP_002226666.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857075|ref|YP_002243726.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|194404631|gb|ACF64853.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|205272646|emb|CAR37556.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205341300|gb|EDZ28064.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206708878|emb|CAR33208.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|309243393|gb|ADO51969.1| SsaR [Salmonella enterica subsp. enterica serovar Gallinarum] gi|320086102|emb|CBY95876.1| Virulence protein yscR [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|326627937|gb|EGE34280.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 215 Score = 142 bits (358), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 77/212 (36%), Positives = 127/212 (59%), Gaps = 11/212 (5%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ GI +LSI P++++M T F + +VFSILR +G+ VPPN+ + LAL ++ ++M Sbjct: 8 LQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIM 67 Query: 100 SPTL----DR--SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 PTL +R +++ P ++ + P+ F++ N+ EK+ + F + Sbjct: 68 GPTLLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRSLIK 122 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 + K ILIP+F +S+L ++F IG LI LPFL ID++++ I++AMGMMM Sbjct: 123 RTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMM 182 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 + P +ISLPFK++ F+L GW L + LV+SF Sbjct: 183 VSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF 214 >gi|218670285|ref|ZP_03519956.1| flagellar biosynthesis protein FliP [Rhizobium etli GR56] Length = 96 Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 68/97 (70%), Positives = 85/97 (87%), Gaps = 2/97 (2%) Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208 +D+A R +I +D I+YR+LIP+FMISE+RR FEIGFL++LPFL+ID+IVATI MA Sbjct: 1 VDLAR--ERGQNIQTSDPIDYRVLIPAFMISEIRRGFEIGFLVVLPFLVIDLIVATITMA 58 Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MGMMMLPPTSISLPFK++FFVLIDGW+LLV +LV+SF Sbjct: 59 MGMMMLPPTSISLPFKILFFVLIDGWNLLVGSLVRSF 95 >gi|218887305|ref|YP_002436626.1| flagellar biosynthesis protein FliP [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758259|gb|ACL09158.1| flagellar biosynthetic protein FliP [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 293 Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 85/201 (42%), Positives = 132/201 (65%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T+LS+AP +++ VT F R IIVF +R +G+ +PP+ V+ SLA+FMT +M P Sbjct: 95 MLTVLSLAPAIMLTVTSFTRIIIVFHFIRQALGVQQLPPSQVLASLAIFMTVVIMMPVGK 154 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + + +QP + +I A+ + P FM +TREKDLS+F + T Sbjct: 155 QINDTALQPYLEERIGFNEALDKAQVPLRSFMFKHTREKDLSIFYAITKMEQPRT----K 210 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + + +L +++ISEL+ F IGFLI +PFL++DM+V++I++AMGMMMLPP +S+PFK Sbjct: 211 EEVPTVMLAAAYVISELKTGFTIGFLIYIPFLVLDMVVSSILLAMGMMMLPPMMVSMPFK 270 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FV++DGW+LLV +LV SF Sbjct: 271 LLLFVMVDGWALLVGSLVNSF 291 >gi|28898446|ref|NP_798051.1| type III secretion system protein [Vibrio parahaemolyticus RIMD 2210633] gi|91224470|ref|ZP_01259732.1| translocation protein in type III secretion [Vibrio alginolyticus 12G01] gi|153836136|ref|ZP_01988803.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio parahaemolyticus AQ3810] gi|254228243|ref|ZP_04921672.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio sp. Ex25] gi|260365110|ref|ZP_05777681.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio parahaemolyticus K5030] gi|260876607|ref|ZP_05888962.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio parahaemolyticus AN-5034] gi|260895032|ref|ZP_05903528.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio parahaemolyticus Peru-466] gi|260900957|ref|ZP_05909352.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio parahaemolyticus AQ4037] gi|262394133|ref|YP_003285987.1| yop virulence translocation protein R [Vibrio sp. Ex25] gi|269967239|ref|ZP_06181303.1| translocation protein in type III secretion [Vibrio alginolyticus 40B] gi|28806663|dbj|BAC59935.1| translocation protein in type III secretion [Vibrio parahaemolyticus RIMD 2210633] gi|91190812|gb|EAS77079.1| translocation protein in type III secretion [Vibrio alginolyticus 12G01] gi|149750411|gb|EDM61156.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio parahaemolyticus AQ3810] gi|151939316|gb|EDN58145.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio sp. Ex25] gi|262337727|gb|ACY51522.1| yop virulence translocation protein R [Vibrio sp. Ex25] gi|269828095|gb|EEZ82365.1| translocation protein in type III secretion [Vibrio alginolyticus 40B] gi|308085950|gb|EFO35645.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio parahaemolyticus Peru-466] gi|308093573|gb|EFO43268.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio parahaemolyticus AN-5034] gi|308110848|gb|EFO48388.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio parahaemolyticus AQ4037] gi|308111579|gb|EFO49119.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio parahaemolyticus K5030] gi|328468941|gb|EGF39901.1| type III secretion system protein YscR [Vibrio parahaemolyticus 10329] Length = 216 Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 73/203 (35%), Positives = 125/203 (61%), Gaps = 6/203 (2%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP----T 102 +L++ P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ ++M+P T Sbjct: 15 ALLALIPFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFET 74 Query: 103 LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT 162 D + I + + + I+ +P+ F++ + RE + F D A + + Sbjct: 75 YDYVKQHDIS--LEDSASVEGLIESGLQPYREFLKKHIRETEAIFFTDAARTLWPQKYVD 132 Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222 + + +L+P+F +SEL R+FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ P +ISLP Sbjct: 133 RLESDSLLLLLPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISLP 192 Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245 FK++ FVL+DGW+ L LV S+ Sbjct: 193 FKLLLFVLLDGWTKLTHGLVLSY 215 >gi|325519943|gb|EGC99198.1| type III secretion system protein YscR [Burkholderia sp. TJI49] Length = 224 Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 78/216 (36%), Positives = 136/216 (62%), Gaps = 15/216 (6%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V + L IAP +MVT + + ++V +LR+ +G+ VPPNLV+ +AL ++ ++M Sbjct: 8 VALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIM 67 Query: 100 SPTLDRSIEMGIQPL---MNNQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMA 152 +P + SI +Q + Q++ T + +A+ P F+ ++TR++D F+ A Sbjct: 68 AP-VGMSIRDALQARHFDASGQLS-TADVGALADAALPPIKDFLVSHTRQRDREFFVRTA 125 Query: 153 HS---SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 S +R I +D + +L+PSF ++EL ++F+IGF+I + F+++D++VA I++A+ Sbjct: 126 TSVWPKNRADGIRDDDLL---VLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANILLAL 182 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GM M+ PT+IS+PFK++ FV +DGWSLLV LV S+ Sbjct: 183 GMQMISPTTISVPFKLLLFVALDGWSLLVHGLVLSY 218 >gi|38639349|gb|AAR25815.1| BcscR [Burkholderia multivorans E243] Length = 224 Score = 142 bits (357), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 76/217 (35%), Positives = 132/217 (60%), Gaps = 17/217 (7%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V + L IAP +MVT + + ++V +LR+ +G+ VPPNLV+ +AL ++ ++M Sbjct: 8 VALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIM 67 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAE----------PFWVFMRNNTREKDLSLFM 149 +P + M I+ + + +T+ A+ P F+ ++TR++D F+ Sbjct: 68 AP-----VGMSIRDALQARHFDTSGQLSTADVGVLADAALPPIKDFLVSHTRQRDRDFFV 122 Query: 150 DMAHSS-HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208 A S +N DH + +L+PSF ++EL ++F+IGF+I + F+++D++V I++A Sbjct: 123 RTATSVWPKNRADAIRDH-DLLVLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVPNILLA 181 Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +GM M+ PT+IS+PFK++ FVL+DGWSLLV LV S+ Sbjct: 182 LGMQMISPTTISVPFKLLLFVLLDGWSLLVHGLVLSY 218 >gi|119953074|ref|YP_945283.1| flagellar biosynthesis protein FliP [Borrelia turicatae 91E135] gi|119861845|gb|AAX17613.1| flagellar biosynthetic protein FliP [Borrelia turicatae 91E135] Length = 256 Score = 141 bits (356), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 79/199 (39%), Positives = 123/199 (61%), Gaps = 9/199 (4%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 +P L+++T F R IV +R + + PPN VI+ LALF+T + M PT + + Sbjct: 63 SPAFLVLMTSFLRIAIVLDFIRRALSLQQSPPNQVIMGLALFLTLFTMWPTFNIIYKEAY 122 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMR---NNTREKDLSLFMDMAHSSHRNTDITKN-DHI 167 PL +++I R P FM +N++ +++ LFM ++ N KN + Sbjct: 123 LPLQDSKIGFNEFYDRGIAPLRNFMYKQMSNSKHEEIRLFMSIS-----NYPRPKNFSEV 177 Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227 +LI SF++ EL+ +F++G LI LPF++ID+IVA ++MAMGM+MLPP ISLPFK++ Sbjct: 178 PTHVLIASFVLHELKVAFKMGILIFLPFIVIDIIVAAVLMAMGMIMLPPVMISLPFKLML 237 Query: 228 FVLIDGWSLLVENLVKSFI 246 FV++DGW+L+ LVKSF+ Sbjct: 238 FVMVDGWTLITSGLVKSFM 256 >gi|320107033|ref|YP_004182623.1| flagellar biosynthetic protein FliP [Terriglobus saanensis SP1PR4] gi|319925554|gb|ADV82629.1| flagellar biosynthetic protein FliP [Terriglobus saanensis SP1PR4] Length = 271 Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 71/193 (36%), Positives = 118/193 (61%), Gaps = 4/193 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +++ +T R ++VF LR +G + P N V+++L L MT++++ P + + + I Sbjct: 83 PAIILAMTPMVRLLVVFHFLRQALGTQTAPSNQVLMALGLMMTWFLIQPVVVQIEQQAIA 142 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P IT + R + P ++ REKDL+LF S T + I RI+ Sbjct: 143 PYRAETITLEECMDRTSVPIKQYLLKYAREKDLALFASAGMSIRPQTRL----DIPLRIV 198 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 IP++++SEL+ F+IG ++ LPFL+ID++VA+I ++GM+ LPP IS P K++ FV++D Sbjct: 199 IPAYILSELKAGFQIGAVLFLPFLLIDLVVASITTSVGMLQLPPVVISTPIKILLFVMVD 258 Query: 233 GWSLLVENLVKSF 245 GW+LL +L+KSF Sbjct: 259 GWNLLAGSLLKSF 271 >gi|39545585|gb|AAR27892.1| AscR [Aeromonas hydrophila] Length = 217 Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 128/206 (62%), Gaps = 12/206 (5%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 +L++ P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ YVM+P Sbjct: 15 ALLALLPFIAVMATSFVKLAVVFSLLRNALGVQQIPPNMAMYGLAIILSIYVMAP----- 69 Query: 107 IEMGIQP-LMNNQIT--ETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 + Q L N+++ ++ ++++ + P+ F++ + ++ + F+D + Sbjct: 70 VGFATQDYLRQNEVSLAKSESVEKFLDEGMAPYRTFLKKQIKPREHAFFIDSTKQLWPSE 129 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + IL+P+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P +I Sbjct: 130 YADRLESDSLLILLPAFTVSELSRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTI 189 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW+ L LV S+ Sbjct: 190 SLPFKLLLFVLLDGWARLTHGLVISY 215 >gi|157373224|ref|YP_001471824.1| flagellar biosynthesis protein FliP [Shewanella sediminis HAW-EB3] gi|157315598|gb|ABV34696.1| Triacylglycerol lipase [Shewanella sediminis HAW-EB3] Length = 242 Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 86/202 (42%), Positives = 124/202 (61%), Gaps = 4/202 (1%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 + T+LS P LL+M+T F R I+V +ILR +G+ PPN V++ +AL +T +VM P Sbjct: 44 ALMTVLSFLPALLMMLTSFTRIIVVLAILRQALGLQQSPPNKVLLGIALVLTLFVMRPVG 103 Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163 + P I A+ P FM TRE DL + +A T Sbjct: 104 QVMYDEAYLPYDQGLIELPEAVNIGVVPLRKFMLAQTRETDLEQMLKIADEPVTLT---- 159 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 D I + +L+P+F++SEL+ +F+IGFL+ LPFL+ID++VA+++M+MGMMML P ISLPF Sbjct: 160 ADEIPFFVLMPAFVLSELKTAFQIGFLLFLPFLVIDLVVASVLMSMGMMMLSPLIISLPF 219 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K++ FVL+DGWS+ V LV SF Sbjct: 220 KLMVFVLVDGWSMTVSTLVASF 241 >gi|253988529|ref|YP_003039885.1| type III secretion system protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211637889|emb|CAR66518.1| type iii secretion component protein sctr [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779979|emb|CAQ83140.1| type iii secretion component protein sctr [Photorhabdus asymbiotica] Length = 217 Score = 141 bits (356), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 125/206 (60%), Gaps = 12/206 (5%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 +LS+ P + +M T F + +VFS+LR +G+ +PPN+ + LA+ +T YVM+P Sbjct: 15 ALLSLLPFIAVMATSFLKLAVVFSLLRNALGVQQIPPNMAMYGLAIILTIYVMAP----- 69 Query: 107 IEMGIQP-LMNNQITETTA------IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 + Q L N+++ + A ++ P+ F++ + + + + F+D + Sbjct: 70 VGFATQDYLRQNEVSFSNAQSVEKFLEEGMAPYRNFLKQHIKSSERTFFIDSTRQIWPSQ 129 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + IL+P+F +SEL R+FEIGFL+ LPF+ ID+I++ I++AMGMMM+ P +I Sbjct: 130 YANRLEPDSLLILLPAFTVSELTRAFEIGFLLYLPFIAIDLIISNILLAMGMMMVSPMTI 189 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW+ L LV S+ Sbjct: 190 SLPFKLLLFVLLDGWTRLTHGLVISY 215 >gi|83646012|ref|YP_434447.1| type III secretion system protein [Hahella chejuensis KCTC 2396] gi|83634055|gb|ABC30022.1| Type III secretory pathway, component EscR [Hahella chejuensis KCTC 2396] Length = 215 Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 76/207 (36%), Positives = 126/207 (60%), Gaps = 5/207 (2%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 T G+ I ++ P +M T F + +V +LR +G+ +PPN+ + LA+ +T Y+M+P Sbjct: 10 TLGLAGI-ALIPFFAVMATSFVKIAVVLGLLRNALGIQQIPPNMALYGLAIILTAYIMAP 68 Query: 102 T-LDRSIEMGIQPLMNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 + E+ +P+ E A+ A +P+ F++ + E + + F + A + Sbjct: 69 VGISAYNELSTKPISLENTQELKALMDTASQPYKEFLQRHGSEDEQTFFHETA-AEIWPE 127 Query: 160 DITKN-DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 D+ K + + +LIP+F SEL +FEIGFLI LPFL ID+I++ I++AMGMMM+ P + Sbjct: 128 DVAKGLEKDSFFVLIPAFTASELTSAFEIGFLIYLPFLAIDLIISNILLAMGMMMVSPMT 187 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLPFK++ FVL+DGW+ L+ LV ++ Sbjct: 188 ISLPFKLLLFVLMDGWTRLIHGLVLAY 214 >gi|332159962|ref|YP_004296539.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664192|gb|ADZ40836.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862413|emb|CBX72572.1| virulence protein yscR [Yersinia enterocolitica W22703] Length = 216 Score = 141 bits (355), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 80/195 (41%), Positives = 122/195 (62%), Gaps = 6/195 (3%) Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRSIEMGIQPL 114 ++M T F + IVFS+LR +G+ VPPN+ I LAL +T ++M+P LD + +PL Sbjct: 24 MVMGTSFLKLSIVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVHARLQDEPL 83 Query: 115 MNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHSSH--RNTDITKNDHIEYRI 171 N+ I A EP+ F++ NT + F D+ + R D K + + I Sbjct: 84 PNDLGALLYHIDEHALEPYRDFLQRNTDAAQVHFFNDIVQTKWPVRYRDTIKPNSL--LI 141 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 L+P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK++ F+LI Sbjct: 142 LMPAFTLSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMVSPITISLPFKLLIFILI 201 Query: 232 DGWSLLVENLVKSFI 246 DGW LL+ LV S++ Sbjct: 202 DGWGLLLGQLVGSYL 216 >gi|46398252|gb|AAS91806.1| AcrR [Aeromonas hydrophila] Length = 217 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 78/207 (37%), Positives = 128/207 (61%), Gaps = 14/207 (6%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP----T 102 +L++ P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ YVM+P T Sbjct: 15 ALLALLPFIAVMATSFVKMAVVFSLLRNALGVQQIPPNMAMYGLAIILSIYVMAPVGFAT 74 Query: 103 LD--RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS--SHRN 158 D R E+ L ++ E + +A P+ F++ + ++ + F+D + Sbjct: 75 QDYLRQNEVS---LAKSESVEKFLDEGIA-PYRAFLKKQIKPREHAFFIDSTKQLWPSKY 130 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 D + D + IL+P+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P + Sbjct: 131 ADRLEPDSL--LILLPAFTVSELSRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMT 188 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLPFK++ FVL+DGW+ L LV S+ Sbjct: 189 ISLPFKLLLFVLLDGWARLTHGLVISY 215 >gi|218892351|ref|YP_002441218.1| type III secretion system protein [Pseudomonas aeruginosa LESB58] gi|218772577|emb|CAW28360.1| translocation protein in type III secretion [Pseudomonas aeruginosa LESB58] Length = 217 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 71/196 (36%), Positives = 122/196 (62%), Gaps = 12/196 (6%) Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116 +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ YVM+P + + + Sbjct: 25 VMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAP-----VGFATRDYLR 79 Query: 117 NQ---ITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169 N ++++ +++R + P+ F++ +E++ + FM+ + + D Sbjct: 80 NHDVSLSDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSL 139 Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229 IL+P+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P +ISLPFK++ FV Sbjct: 140 LILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISLPFKLLLFV 199 Query: 230 LIDGWSLLVENLVKSF 245 L+DGW+ L LV S+ Sbjct: 200 LLDGWARLTHGLVISY 215 >gi|115379117|ref|ZP_01466241.1| type III secretion apparatus protein, YscR/HrcR family [Stigmatella aurantiaca DW4/3-1] gi|115363900|gb|EAU63011.1| type III secretion apparatus protein, YscR/HrcR family [Stigmatella aurantiaca DW4/3-1] Length = 241 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 73/247 (29%), Positives = 141/247 (57%), Gaps = 9/247 (3%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 M R+C A++++ +L L++ + +LS+ P ++M+T Sbjct: 1 MTRFCLAAVWVLPGWAAAGGETLAQASQAGNPLTM-------MAVLAVLSLLPFAVVMLT 53 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F + +V S+ R+ MG PP +V+ LA ++ ++MSP + R E+G + + + Sbjct: 54 SFSKIAVVLSLARSAMGTQQAPPTVVLTGLAAVLSAHIMSPVMARMYEVGREAARDAESG 113 Query: 121 ET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 A++R AEP F+ + ++ S F+++A + T+ + +++P+F+I Sbjct: 114 AQILAAVERTAEPLRAFLVKHGSAEERSRFVELARELRPPEEATQVQEGDLFVVVPAFVI 173 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 +EL+ +F++GFL+ LPFL++DM++A I++A+GM L P+ +SLPFK++ FV +DGW LL Sbjct: 174 TELKEAFQMGFLLFLPFLVLDMVIANILLALGMQSLSPSQVSLPFKILLFVTVDGWPLLA 233 Query: 239 ENLVKSF 245 + L++ + Sbjct: 234 QGLIQGY 240 >gi|16760492|ref|NP_456109.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141748|ref|NP_805090.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213416630|ref|ZP_03349774.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213426016|ref|ZP_03358766.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213581367|ref|ZP_03363193.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213647287|ref|ZP_03377340.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213854184|ref|ZP_03382716.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289827206|ref|ZP_06545929.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25316659|pir||AI0696 probable type III secretion protein yscR [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502788|emb|CAD01946.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29137376|gb|AAO68939.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 215 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 76/208 (36%), Positives = 125/208 (60%), Gaps = 11/208 (5%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 GI +LSI P++++M T F + +VFSILR +G+ VPPN+ + AL ++ ++M PTL Sbjct: 12 GILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTL 71 Query: 104 ----DR--SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +R +++ P ++ + P+ F++ N+ EK+ + F ++ + Sbjct: 72 LAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLIKRTWP 126 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 K ILIP+F +S+L ++F IG LI LPFL ID++++ I++AMGMMM+ P Sbjct: 127 EDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPM 186 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 +ISLPFK++ F+L GW L + LV+SF Sbjct: 187 TISLPFKLLIFLLAGGWDLTLAQLVQSF 214 >gi|171320712|ref|ZP_02909725.1| flagellar biosynthetic protein FliP [Burkholderia ambifaria MEX-5] gi|171094039|gb|EDT39137.1| flagellar biosynthetic protein FliP [Burkholderia ambifaria MEX-5] Length = 259 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 81/214 (37%), Positives = 136/214 (63%), Gaps = 4/214 (1%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D ++ VR + T+LSI P L++ +T F R +IV S++R GM PP V+ISLA Sbjct: 49 DRDGASEAVRIAVLLTLLSIGPALVVSMTAFIRIVIVLSMIRHAFGMPETPPTPVLISLA 108 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 LF+T +VM P D +QP M+ +I A++ A P FM R+ +L L ++ Sbjct: 109 LFLTAFVMMPAFDTLHHDALQPFMDGRIAVDRALELGAAPLRDFMLRQVRDDELRLMYEL 168 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + ++ D + L P+F+++ELR +F+IGF+++LPFL++D++V+T+++++GM Sbjct: 169 SRKPLPDS----ADEVGLLQLTPAFILNELRVAFQIGFVVLLPFLLLDLVVSTVLLSLGM 224 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +M+PP++ISLP K++ FVLIDGW L++ ++ F Sbjct: 225 LMVPPSTISLPLKILMFVLIDGWGLVMRGVLGGF 258 >gi|312883878|ref|ZP_07743595.1| type III secretion system protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309368336|gb|EFP95871.1| type III secretion system protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 216 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 72/201 (35%), Positives = 125/201 (62%), Gaps = 2/201 (0%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 +L++ P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ ++M+P + Sbjct: 15 ALLALVPFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMAMYGLAIILSIFIMAPVGFET 74 Query: 107 IEMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + Q ++ + E+ I +P+ F++ + RE + F D A + + + Sbjct: 75 YDYVKQNEISLEDPESIEGVIDNGLQPYREFLKKHIRETESVFFTDAARALWPKKYVERL 134 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + +L+P+F +SEL R+FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK Sbjct: 135 ETDSLLLLLPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISLPFK 194 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW+ L LV S+ Sbjct: 195 LLLFVLLDGWTKLTHGLVLSY 215 >gi|238764052|ref|ZP_04625007.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia kristensenii ATCC 33638] gi|238697723|gb|EEP90485.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia kristensenii ATCC 33638] Length = 216 Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 79/194 (40%), Positives = 122/194 (62%), Gaps = 6/194 (3%) Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRSIEMGIQPLM 115 +M T F + IVFS+LR +G+ VPPN+ I LAL +T ++M+P LD + +PL Sbjct: 25 VMGTSFLKLSIVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVHARLQDEPLP 84 Query: 116 NNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHSS--HRNTDITKNDHIEYRIL 172 N+ I A P+ F++ NT + ++ F D+ + R D K + + IL Sbjct: 85 NDIGALLHHIDESALGPYRDFLQRNTDAEQVNFFNDIVKTKWPERYRDTIKPNSL--LIL 142 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 +P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK++ F+LID Sbjct: 143 MPAFTLSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMVSPITISLPFKLLIFILID 202 Query: 233 GWSLLVENLVKSFI 246 GW LL+ LV S++ Sbjct: 203 GWGLLLGQLVGSYL 216 >gi|254517017|ref|ZP_05129075.1| flagellar biosynthetic protein FliP [gamma proteobacterium NOR5-3] gi|219674522|gb|EED30890.1| flagellar biosynthetic protein FliP [gamma proteobacterium NOR5-3] Length = 247 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 87/193 (45%), Positives = 123/193 (63%), Gaps = 4/193 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P LI +T F R +IV +ILR +G P N +I+ L+LF++ ++M+P + + +Q Sbjct: 57 PAALITMTSFTRILIVLAILRQALGTAQTPSNQIILGLSLFLSLFIMAPVFEVAWSTALQ 116 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P MN + T A+ PF FM TRE DL LF ++ NT D + +L Sbjct: 117 PYMNETVGFTEALDAAKIPFREFMFGQTRETDLLLFAELGGYGAFNTP----DDVPMVVL 172 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 +PSF+ SEL+ +F+IGFL+ +PFLIID++VA ++M+MGMMML P ISLPFK++ FVLID Sbjct: 173 LPSFLTSELKTAFQIGFLMFVPFLIIDLVVAAVLMSMGMMMLSPMLISLPFKLMLFVLID 232 Query: 233 GWSLLVENLVKSF 245 GWSL+ LV SF Sbjct: 233 GWSLVAATLVTSF 245 >gi|307947532|ref|ZP_07662865.1| type III secretion apparatus protein, YscR/HrcR family [Roseibium sp. TrichSKD4] gi|307769350|gb|EFO28578.1| type III secretion apparatus protein, YscR/HrcR family [Roseibium sp. TrichSKD4] Length = 217 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 74/213 (34%), Positives = 126/213 (59%), Gaps = 11/213 (5%) Query: 41 RTFGIFTI---LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFY 97 +FG+ + ++ PI+ + VT F + +V I+R G+ ++PPN+V+ LA+ ++ Y Sbjct: 7 NSFGVIALVFFMAFLPIIAVTVTAFAKIAVVLMIVRNATGLQNLPPNVVMYGLAIILSAY 66 Query: 98 VMSPTLDRSIEMGIQ--PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH-- 153 + P + S E Q P + A Q + P F++ + EK + F+ Sbjct: 67 IAFPVVADSFERVQQTVPELETAQDWIKAGQEGSAPLKEFLKKHADEKQTAFFLASTRKI 126 Query: 154 -SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 D T D IL+PSF++SEL ++FEIGFL+ LPF+ ID+IV T+++A+GMM Sbjct: 127 WGDKYAQDATPED---LAILVPSFLLSELTKAFEIGFLLFLPFIAIDIIVTTVLIALGMM 183 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+PP++IS+PFK++ FV ++GWS +V+ L+ ++ Sbjct: 184 MVPPSTISIPFKLMLFVFVEGWSKIVQGLLLTY 216 >gi|325474550|gb|EGC77736.1| flagellar biosynthetic protein fliP [Treponema denticola F0402] Length = 259 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 77/200 (38%), Positives = 118/200 (59%), Gaps = 2/200 (1%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T++SIAP LL+++T F R IV ++ + + VPP V+ +A F+T ++M PT + Sbjct: 62 TLISIAPSLLLLMTSFLRLSIVLDFVKRALSLQQVPPTQVLNGIAFFLTLFIMWPTFTQI 121 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 +P+ QI A + +P FM ++ + MA S D + Sbjct: 122 YNNAYKPMSEGQIGIEEAYREAEKPMRYFMYKQMQKNPAHIRTFMAMSKLPKPDTLAD-- 179 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 + ILI +F++ EL +F+IG + LPF+IIDMIVA+I+M+MGM+MLPP IS+PFK+I Sbjct: 180 VPTHILIAAFILHELTIAFQIGIFLYLPFIIIDMIVASILMSMGMIMLPPVQISMPFKLI 239 Query: 227 FFVLIDGWSLLVENLVKSFI 246 FV++DGW LL L +SF+ Sbjct: 240 LFVMVDGWGLLFGKLFESFL 259 >gi|42528260|ref|NP_973358.1| flagellar biosynthesis protein FliP [Treponema denticola ATCC 35405] gi|7387675|sp|Q9X5A6|FLIP_TREDE RecName: Full=Flagellar biosynthetic protein fliP gi|4426951|gb|AAD20625.1| flagellar export protein FliP [Treponema denticola] gi|41819530|gb|AAS13277.1| flagellar biosynthesis protein FliP [Treponema denticola ATCC 35405] Length = 271 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 77/200 (38%), Positives = 118/200 (59%), Gaps = 2/200 (1%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T++SIAP LL+++T F R IV ++ + + VPP V+ +A F+T ++M PT + Sbjct: 74 TLISIAPSLLLLMTSFLRLSIVLDFVKRALSLQQVPPTQVLNGIAFFLTLFIMWPTFTQI 133 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 +P+ QI A + +P FM ++ + MA S D + Sbjct: 134 YNNAYKPMSEGQIGIEEAYREAEKPMRYFMYKQMQKNPTHIRTFMAMSKLPKPDTLAD-- 191 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 + ILI +F++ EL +F+IG + LPF+IIDMIVA+I+M+MGM+MLPP IS+PFK+I Sbjct: 192 VPTHILIAAFILHELTIAFQIGIFLYLPFIIIDMIVASILMSMGMIMLPPVQISMPFKLI 251 Query: 227 FFVLIDGWSLLVENLVKSFI 246 FV++DGW LL L +SF+ Sbjct: 252 LFVMVDGWGLLFGKLFESFL 271 >gi|145301463|ref|YP_001144302.1| type III secretion system protein [Aeromonas salmonicida subsp. salmonicida A449] gi|38201229|emb|CAD56764.1| ascR protein [Aeromonas salmonicida subsp. salmonicida] gi|66947958|emb|CAE83095.1| AscR protein [Aeromonas salmonicida subsp. salmonicida] gi|142856345|gb|ABO92554.1| AscR protein [Aeromonas salmonicida subsp. salmonicida A449] gi|145284338|gb|ABP51919.1| AscR [Aeromonas veronii bv. sobria] Length = 217 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 78/207 (37%), Positives = 128/207 (61%), Gaps = 14/207 (6%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP----T 102 +L++ P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ YVM+P T Sbjct: 15 ALLALLPFIAVMATSFVKLAVVFSLLRNALGVQQIPPNMAMYGLAIILSIYVMAPVGFAT 74 Query: 103 LD--RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS--SHRN 158 D R E+ L ++ E + +A P+ F++ + ++ + F+D + Sbjct: 75 QDYLRQNEVS---LAKSESVEKFLDEGIA-PYRDFLKKQIKPREHAFFIDSTKQLWPSKY 130 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 D + D + IL+P+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P + Sbjct: 131 ADRLEPDSL--LILLPAFTVSELSRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMT 188 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLPFK++ FVL+DGW+ L LV S+ Sbjct: 189 ISLPFKLLLFVLLDGWARLTHGLVISY 215 >gi|319787090|ref|YP_004146565.1| flagellar biosynthetic protein FliP [Pseudoxanthomonas suwonensis 11-1] gi|317465602|gb|ADV27334.1| flagellar biosynthetic protein FliP [Pseudoxanthomonas suwonensis 11-1] Length = 257 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 84/207 (40%), Positives = 129/207 (62%), Gaps = 6/207 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++T + T +++ P LL+++TCF R IIV ++LR MG G P N +++ L+LF+T +M Sbjct: 53 LQTLLLMTGITLLPSLLLVMTCFTRIIIVMALLRQAMGTGQTPSNQILVGLSLFLTAMIM 112 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-HSSHRN 158 P ++ + G P +N +I +A P FM RE DL F +A H ++ + Sbjct: 113 MPVWQKAWDAGFAPYLNGEIDFRSAWDLGTAPLRAFMLAQVRETDLMTFAGLAGHDTYAS 172 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 + + + +L SF+ SEL+ +FEIGFLI +PF+IID++VA+++M+MGMMML P Sbjct: 173 PE-----AVPFPVLAASFVTSELKTAFEIGFLIFIPFVIIDLVVASVLMSMGMMMLSPML 227 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 IS PFK++ FVL+DGW L V L SF Sbjct: 228 ISAPFKILLFVLVDGWVLTVGTLAASF 254 >gi|148976243|ref|ZP_01812967.1| putative flagellar assembly protein [Vibrionales bacterium SWAT-3] gi|145964337|gb|EDK29592.1| putative flagellar assembly protein [Vibrionales bacterium SWAT-3] Length = 246 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 76/201 (37%), Positives = 125/201 (62%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T+LS P +IM T F R +IV +ILR +G+ PPN V++ +AL T +M P Sbjct: 46 LMTLLSFVPAFVIMCTSFTRIVIVLAILRQALGLQQTPPNQVLVGIALIFTLLIMRPVWT 105 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + + P +++T A+ +P +M + T+ K L +A T I + Sbjct: 106 KIYDTAYIPYSKDEVTLMEALATAEKPLRRYMLDQTQRKALEQVSKIAG----ETAIESD 161 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 I + +L+P++++SEL+ +F+IGF++ LPFL+ID++VA+++M+MGMMML P +SLPFK Sbjct: 162 QDIPFLVLLPAYLLSELKAAFQIGFMLFLPFLVIDLVVASVLMSMGMMMLSPLIVSLPFK 221 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FV++DGW LL+ +L SF Sbjct: 222 LLVFVIVDGWGLLMGSLANSF 242 >gi|9663090|emb|CAC01108.1| FliP flagellar protein [Helicobacter pylori] Length = 160 Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 66/147 (44%), Positives = 101/147 (68%), Gaps = 4/147 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P L++++T F R I+VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+ Sbjct: 18 PSLILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIK 77 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P M+ +I+ T A ++ A PF FM NTREKDL+LF + + + T D + +L Sbjct: 78 PYMDKKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTP----DEVSLSVL 133 Query: 173 IPSFMISELRRSFEIGFLIILPFLIID 199 IP+FMISEL+ +F+IGFL+ LPFL+ID Sbjct: 134 IPAFMISELKTAFQIGFLLYLPFLVID 160 >gi|167590548|ref|ZP_02382936.1| Yop virulence translocation R [Burkholderia ubonensis Bu] Length = 222 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 75/216 (34%), Positives = 136/216 (62%), Gaps = 15/216 (6%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V + L IAP +MVT + + ++V +LR+ +G+ VPPNLV+ +AL ++ ++M Sbjct: 8 VALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIM 67 Query: 100 SPTLDRSIEMGIQPL---MNNQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMA 152 +P + SI +Q + Q++ T + +A+ P F+ ++TR++D F+ A Sbjct: 68 AP-VGMSIRDALQQRHFDASGQLS-TADVGALADAALPPIKDFLVSHTRQRDREFFVRTA 125 Query: 153 HS---SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 S +R + +D + +L+PSF ++EL ++F+IGF+I + F+++D++VA I++A+ Sbjct: 126 TSVWPKNRAEGVKDDDLL---VLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANILLAL 182 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GM M+ PT+IS+PFK++ FV +DGW++LV LV S+ Sbjct: 183 GMQMISPTTISVPFKLLLFVALDGWAMLVHGLVLSY 218 >gi|15639705|ref|NP_219155.1| flagellar biosynthesis protein FliP [Treponema pallidum subsp. pallidum str. Nichols] gi|189025943|ref|YP_001933715.1| flagellar biosynthesis protein FliP [Treponema pallidum subsp. pallidum SS14] gi|2494564|sp|P74930|FLIP_TREPA RecName: Full=Flagellar biosynthetic protein fliP gi|973197|gb|AAB00546.1| FliP [Treponema pallidum] gi|3323020|gb|AAC65684.1| flagellar biosynthetic protein (fliP) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018518|gb|ACD71136.1| flagellar biosynthetic protein [Treponema pallidum subsp. pallidum SS14] gi|291060082|gb|ADD72817.1| flagellar biosynthetic protein FliP [Treponema pallidum subsp. pallidum str. Chicago] Length = 271 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 75/195 (38%), Positives = 116/195 (59%), Gaps = 2/195 (1%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +L+++T F R IV ++ + + VPP V+ +ALF+ ++M P Sbjct: 79 APSILLLMTAFLRLSIVLDFIKRALSLQQVPPTQVLHGIALFLALFIMWPVFTEIYAKSF 138 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 +PL + Q+ TA P VFM S+ + M+ + D T D Y + Sbjct: 139 KPLTDGQVDIQTAYTEAERPLRVFMYRQMAHDPSSVRLCMSMAKLPKPD-TLADVPTY-V 196 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 LIP+F++ EL +F+IG + LPF+I+DM+VA+I+M+MGM+MLPP ISLPFK++ FVL+ Sbjct: 197 LIPAFILHELTVAFQIGIFLYLPFIIVDMVVASILMSMGMIMLPPVQISLPFKLVLFVLV 256 Query: 232 DGWSLLVENLVKSFI 246 DGW+LL++ L SF+ Sbjct: 257 DGWNLLIDRLFHSFL 271 >gi|237678817|emb|CAQ57544.1| RHCR protein [Bradyrhizobium elkanii] Length = 221 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 76/195 (38%), Positives = 114/195 (58%), Gaps = 8/195 (4%) Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115 ++ T F + +V ++R +G S+PPN+V+ AL +T ++ +P +++ P + Sbjct: 25 VVTTTAFIKVSVVLFLVRNALGTQSIPPNIVLYGAALILTVFISAPVFEQTYNRLTDPQL 84 Query: 116 NNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH---SSHRNTDITKNDHIEYR 170 Q + TA + EP ++ T E+ F+ A S T +D + Sbjct: 85 RYQTFDDWVTAAKEGQEPLRAHLKKFTNEEQRRFFLSSAEHVWSEEMRGSATADDFV--- 141 Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230 IL+PSF+ISEL+R FEIGFL+ LPF+ ID+IV TI+MAMGM M+ PT IS+PFK+ FV Sbjct: 142 ILVPSFLISELKRGFEIGFLLYLPFITIDLIVTTILMAMGMSMVSPTVISVPFKLFLFVT 201 Query: 231 IDGWSLLVENLVKSF 245 IDGWS L+ LV S+ Sbjct: 202 IDGWSRLMHGLVLSY 216 >gi|171915734|ref|ZP_02931204.1| type III secretion system protein [Verrucomicrobium spinosum DSM 4136] Length = 222 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 73/201 (36%), Positives = 130/201 (64%), Gaps = 2/201 (0%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 ++L++ P L +MVT + + ++V S++R +G+ +PPN+V+ +A+ +T Y+M+P ++ Sbjct: 17 SVLALIPFLAVMVTSYVKLVVVLSLVRNALGVQQIPPNMVLNGIAVILTIYIMAPIGQQT 76 Query: 107 -IEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + + L N + I R + P F+ +T +++ + F+D A + K Sbjct: 77 FANLEKEDLKNLSVESIKGIMDRSSTPIRKFLAYHTADREKAFFLDTARRLWGDKAQVKI 136 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D ++ +LIP+F +SEL +F+IGFL+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK Sbjct: 137 DKDDFFVLIPAFTVSELTAAFQIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISLPFK 196 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW+ L+ LV ++ Sbjct: 197 LLLFVLVDGWARLIHGLVITY 217 >gi|116328498|ref|YP_798218.1| flagellar biosynthesis protein FliP [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331228|ref|YP_800946.1| flagellar biosynthesis protein FliP [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121242|gb|ABJ79285.1| Endoflagellar biosynthesis pathway protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124917|gb|ABJ76188.1| Endoflagellar biosynthesis pathway protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 260 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 145/221 (65%), Gaps = 10/221 (4%) Query: 28 NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87 N P + S+S ++ + TILS+AP +++ +T F + +IV +R + + ++PPN V+ Sbjct: 46 NSPRETSLSLMVL---FLVTILSLAPAIVMSLTSFTKIVIVLDFVRRALSIQNLPPNQVM 102 Query: 88 ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN---TREKD 144 + LALFMTF++M+PTL+ E + P + +I + ++ P FM + KD Sbjct: 103 MGLALFMTFFIMAPTLNTVNERALAPYLEGKIDTNSFFEKGMVPIREFMMRQIGTSGAKD 162 Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204 ++LF+ + + ++ D + +LIP+FM+SE++++F IG +I +PF++ID++VA+ Sbjct: 163 VALFLKIG----KVEEVESFDDVPSYVLIPAFMLSEIKKAFWIGIIIFIPFIVIDLVVAS 218 Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +++MG+MMLPP +SLPFK+I FVL+DGW+L+V LV+S+ Sbjct: 219 ALLSMGLMMLPPVMVSLPFKLILFVLVDGWNLIVYELVRSY 259 >gi|238787477|ref|ZP_04631275.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia frederiksenii ATCC 33641] gi|238724264|gb|EEQ15906.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia frederiksenii ATCC 33641] Length = 216 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 79/195 (40%), Positives = 121/195 (62%), Gaps = 6/195 (3%) Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRSIEMGIQPL 114 ++M T F + IVFS+LR +G+ VPPN+ I LAL +T ++M+P LD + +PL Sbjct: 24 MVMGTSFLKLSIVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVHARLQDEPL 83 Query: 115 MNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHSS--HRNTDITKNDHIEYRI 171 N I A P+ F++ NT + F D+ + R D K++ + I Sbjct: 84 PNEIGPLLHHIDEHALGPYRDFLQRNTDAEQTHFFTDIVQTKWPERYRDTIKSNSL--LI 141 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 L+P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK++ F+LI Sbjct: 142 LMPAFTLSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMVSPITISLPFKLLIFILI 201 Query: 232 DGWSLLVENLVKSFI 246 DGW LL+ LV S++ Sbjct: 202 DGWGLLLGQLVGSYL 216 >gi|51598535|ref|YP_072723.1| flagellar biosynthesis protein FliP [Borrelia garinii PBi] gi|51573106|gb|AAU07131.1| flagellar biosynthesis protein [Borrelia garinii PBi] Length = 254 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 74/199 (37%), Positives = 123/199 (61%), Gaps = 9/199 (4%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 +P L+++T F R IV +R + + PP +++ LALF+T + M PT + + Sbjct: 61 SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNVIYKQAY 120 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMR---NNTREKDLSLFMDMAHSSHRNTDITKN-DHI 167 PL ++I + P +FM ++ R +++ LFM ++ N D KN + Sbjct: 121 LPLKESKINFDEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSIS-----NYDRPKNFSEV 175 Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227 +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP ISLPFK+I Sbjct: 176 PTHVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLIL 235 Query: 228 FVLIDGWSLLVENLVKSFI 246 FV++DGW+L+ L+KSF+ Sbjct: 236 FVMVDGWTLITSGLIKSFM 254 >gi|170766856|ref|ZP_02901309.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia albertii TW07627] gi|170124294|gb|EDS93225.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia albertii TW07627] gi|315617513|gb|EFU98119.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli 3431] Length = 217 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 75/201 (37%), Positives = 127/201 (63%), Gaps = 12/201 (5%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 +F +LS+ PI +++ T F + IV IL+ +G+ VPPN+ + S++L +T ++MSP + Sbjct: 17 VFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPII- 75 Query: 105 RSIEMGIQPLMNNQITETTA--IQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRN 158 I I QI+ T + Q+V E P+ VF+ NT +++++ F ++A N Sbjct: 76 LQINDNIS---QEQISYTDSDFFQKVDEKILSPYRVFLEKNTDKENVAFFENVAQKKLGN 132 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 I K D + IL+P+F + +L +F+IGFL+ LPF+ ID+I++ I++A+GMMM+ P + Sbjct: 133 ETILKKDSL--FILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVT 190 Query: 219 ISLPFKVIFFVLIDGWSLLVE 239 IS+PFK++ F+L+ GW L E Sbjct: 191 ISIPFKILLFILVGGWQKLFE 211 >gi|304311653|ref|YP_003811251.1| Type III secretory pathway protein [gamma proteobacterium HdN1] gi|301797386|emb|CBL45606.1| Type III secretory pathway protein [gamma proteobacterium HdN1] Length = 221 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 123/206 (59%), Gaps = 16/206 (7%) Query: 51 IAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMG 110 +AP + +MVT F + ++V S+LR +G+ PPN+V+ LA+ ++ YVM P L + Sbjct: 20 MAPFVAVMVTAFTKLVVVLSLLRNSLGLQQTPPNVVLNGLAIILSLYVMYPVL-----LQ 74 Query: 111 IQPLMNNQITETT----AIQRVAE-------PFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 Q L+ + + ET + R+ E P F+ +++E + F++ A Sbjct: 75 TQSLITSHLKETPEAKLTVDRLIEIFDVGKKPLKDFLIRHSKESERHFFLESARQLLPEE 134 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 D ++ +++P+F +SEL +F+IGFL+ LPFLIID++V+ ++MA+G+ ML PT + Sbjct: 135 DRNNIHEDDFLVIVPAFTVSELSAAFQIGFLLFLPFLIIDLLVSNLLMALGIAMLSPTQV 194 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FV I GW+ L+ LV ++ Sbjct: 195 SLPFKLLLFVFISGWTQLIHGLVLTY 220 >gi|219684692|ref|ZP_03539635.1| flagellar biosynthetic protein FliP [Borrelia garinii PBr] gi|219685749|ref|ZP_03540560.1| flagellar biosynthetic protein FliP [Borrelia garinii Far04] gi|219672054|gb|EED29108.1| flagellar biosynthetic protein FliP [Borrelia garinii PBr] gi|219672688|gb|EED29716.1| flagellar biosynthetic protein FliP [Borrelia garinii Far04] Length = 254 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 74/199 (37%), Positives = 123/199 (61%), Gaps = 9/199 (4%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 +P L+++T F R IV +R + + PP +++ LALF+T + M PT + + Sbjct: 61 SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNVIYKQAY 120 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMR---NNTREKDLSLFMDMAHSSHRNTDITKN-DHI 167 PL ++I + P +FM ++ R +++ LFM ++ N D KN + Sbjct: 121 LPLKESKINFDEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSIS-----NYDRPKNFSEV 175 Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227 +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP ISLPFK+I Sbjct: 176 PTHVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLIL 235 Query: 228 FVLIDGWSLLVENLVKSFI 246 FV++DGW+L+ L+KSF+ Sbjct: 236 FVMVDGWTLITSGLIKSFM 254 >gi|310823554|ref|YP_003955912.1| type III secretion apparatus protein yscr/hrcr [Stigmatella aurantiaca DW4/3-1] gi|309396626|gb|ADO74085.1| Type III secretion apparatus protein YscR/HrcR [Stigmatella aurantiaca DW4/3-1] Length = 206 Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 67/204 (32%), Positives = 127/204 (62%), Gaps = 2/204 (0%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 + +LS+ P ++M+T F + +V S+ R+ MG PP +V+ LA ++ ++MSP + Sbjct: 2 AVLAVLSLLPFAVVMLTSFSKIAVVLSLARSAMGTQQAPPTVVLTGLAAVLSAHIMSPVM 61 Query: 104 DRSIEMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161 R E+G + + + A++R AEP F+ + ++ S F+++A + Sbjct: 62 ARMYEVGREAARDAESGAQILAAVERTAEPLRAFLVKHGSAEERSRFVELARELRPPEEA 121 Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221 T+ + +++P+F+I+EL+ +F++GFL+ LPFL++DM++A I++A+GM L P+ +SL Sbjct: 122 TQVQEGDLFVVVPAFVITELKEAFQMGFLLFLPFLVLDMVIANILLALGMQSLSPSQVSL 181 Query: 222 PFKVIFFVLIDGWSLLVENLVKSF 245 PFK++ FV +DGW LL + L++ + Sbjct: 182 PFKILLFVTVDGWPLLAQGLIQGY 205 >gi|149191147|ref|ZP_01869405.1| flagellar biosynthesis protein P [Vibrio shilonii AK1] gi|148834985|gb|EDL51964.1| flagellar biosynthesis protein P [Vibrio shilonii AK1] Length = 245 Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 79/201 (39%), Positives = 124/201 (61%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T+LS P +IM T F R IIV +ILR +G+ PPN V+I +AL T +M P Sbjct: 45 LMTMLSFVPAFVIMCTSFTRIIIVLAILRQALGLQQTPPNQVLIGIALIFTLLIMRPVWT 104 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + + P + IT A+ +P +M + T+ K L +A +D Sbjct: 105 KIYDTAYVPYSTDDITLMEALASAEKPLRRYMLDQTQRKALEQVTKIAGEKTLASD---- 160 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + I + IL+P++++SEL+ +F+IGF++ LPFL+ID++VA+++M+MGMMML P +SLPFK Sbjct: 161 EKIPFLILLPAYLLSELKVAFQIGFMLFLPFLVIDLVVASVLMSMGMMMLSPLIVSLPFK 220 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FV++DGW LL+ +L SF Sbjct: 221 LLVFVIVDGWGLLMGSLANSF 241 >gi|318607487|emb|CBY28985.1| type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components) [Yersinia enterocolitica subsp. palearctica Y11] Length = 216 Score = 139 bits (350), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 79/195 (40%), Positives = 121/195 (62%), Gaps = 6/195 (3%) Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRSIEMGIQPL 114 ++M T F + IV S+LR +G+ VPPN+ I LAL +T ++M+P LD + +PL Sbjct: 24 MVMGTSFLKLSIVLSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVHARLQDEPL 83 Query: 115 MNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHSSH--RNTDITKNDHIEYRI 171 N+ I A EP+ F++ NT + F D+ + R D K + + I Sbjct: 84 PNDLGALLYHIDEHALEPYRDFLQRNTDAAQVHFFNDIVQTKWPVRYRDTIKPNSL--LI 141 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 L+P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK++ F+LI Sbjct: 142 LMPAFTLSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMVSPITISLPFKLLIFILI 201 Query: 232 DGWSLLVENLVKSFI 246 DGW LL+ LV S++ Sbjct: 202 DGWGLLLGQLVGSYL 216 >gi|213029393|ref|ZP_03343840.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 203 Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 75/207 (36%), Positives = 124/207 (59%), Gaps = 11/207 (5%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL- 103 I +LSI P++++M T F + +VFSILR +G+ VPPN+ + AL ++ ++M PTL Sbjct: 1 ILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLL 60 Query: 104 ---DR--SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 +R +++ P ++ + P+ F++ N+ EK+ + F ++ + Sbjct: 61 AVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLIKRTWPE 115 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 K ILIP+F +S+L ++F IG LI LPFL ID++++ I++AMGMMM+ P + Sbjct: 116 DIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMT 175 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLPFK++ F+L GW L + LV+SF Sbjct: 176 ISLPFKLLIFLLAGGWDLTLAQLVQSF 202 >gi|88704277|ref|ZP_01101991.1| flagellar biosynthetic protein FliP [Congregibacter litoralis KT71] gi|88701328|gb|EAQ98433.1| flagellar biosynthetic protein FliP [Congregibacter litoralis KT71] Length = 248 Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 86/193 (44%), Positives = 123/193 (63%), Gaps = 4/193 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P LI +T F R +IV +ILR +G P N +I+ L+LF++ ++M+P + + +Q Sbjct: 58 PAALITMTSFTRILIVLAILRQALGTAQTPSNQIILGLSLFLSLFIMAPVFETAWVTALQ 117 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P MN + + A+ PF FM TRE DL LF ++ NT D + +L Sbjct: 118 PYMNETVGFSEALDAAKIPFREFMFGQTRETDLLLFAELGGYEPFNT----RDDVPMVVL 173 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 +PSF+ SEL+ +F+IGFL+ +PFLIID++VA ++M+MGMMML P ISLPFK++ FVLID Sbjct: 174 LPSFLTSELKTAFQIGFLMFVPFLIIDLVVAAVLMSMGMMMLSPMLISLPFKLMLFVLID 233 Query: 233 GWSLLVENLVKSF 245 GWSL+ LV SF Sbjct: 234 GWSLIAATLVTSF 246 >gi|33596843|ref|NP_884486.1| type III secretion system protein [Bordetella parapertussis 12822] gi|33600617|ref|NP_888177.1| type III secretion system protein [Bordetella bronchiseptica RB50] gi|6708104|gb|AAF25801.1|AF172245_3 BscR [Bordetella bronchiseptica] gi|33568216|emb|CAE32129.1| putative type III secretion protein [Bordetella bronchiseptica RB50] gi|33573544|emb|CAE37535.1| putative type III secretion protein [Bordetella parapertussis] Length = 223 Score = 138 bits (348), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 71/207 (34%), Positives = 124/207 (59%), Gaps = 18/207 (8%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P++++M T F + +V +++R +G+ VPPN+ + LAL ++ YVM+P + R I +Q Sbjct: 20 PLIVVMTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHR-IGTEVQ 78 Query: 113 PLMNNQITETTA-----------IQRVAEPFWVFMRNNTREKDLSLFMDMAH---SSHRN 158 L TA ++R P FM N++ F+ A + Sbjct: 79 ALTAQAGESGTAAPMALDAVLGVVERGVAPLRAFMLRNSQPAQRDFFLRTARHLWGEEAS 138 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 D+++++ + +L P+F++SEL +F++GFL+ LPF+IID+IV+ I++AMGMMM+ P + Sbjct: 139 RDLSEDNLL---VLTPAFLVSELTAAFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVT 195 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 IS+P K+ FV++DGW+ L++ LV S+ Sbjct: 196 ISMPLKLFLFVMVDGWTRLIQGLVLSY 222 >gi|46562139|ref|YP_009162.1| type III secretion system protein [Desulfovibrio vulgaris str. Hildenborough] gi|120586838|ref|YP_961183.1| type III secretion system protein [Desulfovibrio vulgaris subsp. vulgaris DP4] gi|46447676|gb|AAS94342.1| type III secretion system protein, YscR family [Desulfovibrio vulgaris str. Hildenborough] gi|120564252|gb|ABM29995.1| Yop virulence translocation R [Desulfovibrio vulgaris DP4] gi|311235512|gb|ADP88365.1| Yop virulence translocation R [Desulfovibrio vulgaris RCH1] Length = 216 Score = 138 bits (348), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 77/207 (37%), Positives = 132/207 (63%), Gaps = 13/207 (6%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP----T 102 +L +AP L+MVT + + ++V S++R +G+ VPP +V+ LA+ ++ ++M+P T Sbjct: 14 ALLGLAPFFLMMVTSYVKIVVVTSLVRNALGVQQVPPTMVMNGLAIILSIFIMAPVASGT 73 Query: 103 LDRSIEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRN 158 LD M I P + E A+ + + P F+ N +K +++FM A + ++ Sbjct: 74 LDLMQNMKIGP--DPAPREIIALLDKASPPLRGFLERNADDKVVTVFMSTAKRIWPADQH 131 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 I++++ + ILIPSF ISEL R+F+IGFL+ LPF+ ID++++ I++AMGMMM+ P + Sbjct: 132 ASISRDNLL---ILIPSFTISELTRAFQIGFLLYLPFVAIDLVISNILLAMGMMMVSPMT 188 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLPFK++ FV +DGW + + L+ S+ Sbjct: 189 ISLPFKLLLFVTLDGWLKVSQGLLLSY 215 >gi|331653360|ref|ZP_08354365.1| flagellar biosynthetic protein FliP [Escherichia coli M718] gi|331049458|gb|EGI21530.1| flagellar biosynthetic protein FliP [Escherichia coli M718] Length = 145 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 64/147 (43%), Positives = 101/147 (68%), Gaps = 4/147 (2%) Query: 99 MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 MSP +D+ QP +I+ A+++ A+P FM TRE DL LF +A++ Sbjct: 1 MSPVIDKIYVDAYQPFSEEKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGP-- 58 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 + + + RIL+P+++ SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP + Sbjct: 59 --LQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPAT 116 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 117 IALPFKLMLFVLVDGWQLLVGSLAQSF 143 >gi|1185059|gb|AAB58968.1| flagellar export protein [Borrelia burgdorferi] Length = 254 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 74/199 (37%), Positives = 121/199 (60%), Gaps = 9/199 (4%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 +P L+++T F R IV +R + + PP +++ LALF+T + M PT + E Sbjct: 61 SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNSIYEQAY 120 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMR---NNTREKDLSLFMDMAHSSHRNTDITKN-DHI 167 PL ++I + P +FM ++ R +++ L M M+ N D KN + Sbjct: 121 LPLKESKINFNEFYNKGIAPLRIFMYKQMSDGRHEEIRLLMSMS-----NYDRPKNFSEV 175 Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227 +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP ISL FK+I Sbjct: 176 PSHVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLHFKLIL 235 Query: 228 FVLIDGWSLLVENLVKSFI 246 FV++DGW+L+ L+KSF+ Sbjct: 236 FVMVDGWTLITSGLIKSFM 254 >gi|154249381|ref|YP_001410206.1| flagellar biosynthesis protein FliP [Fervidobacterium nodosum Rt17-B1] gi|154153317|gb|ABS60549.1| flagellar biosynthetic protein FliP [Fervidobacterium nodosum Rt17-B1] Length = 251 Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 79/197 (40%), Positives = 123/197 (62%), Gaps = 7/197 (3%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +LI+ T F R IIVFS R +G VPPN V+I LAL +TF++M PT + + Sbjct: 57 APSILILFTSFTRIIIVFSFTRNALGTRQVPPNQVLIGLALILTFFIMQPTWNEINTNAL 116 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRN---NTREKDLSLFMDMAHSSHRNTDITKNDHIE 168 P M+ +IT R FM N N +D ++F +A++ +N +TK + Sbjct: 117 TPYMDGKITYQEFFSRTMASVRKFMINELVNHHNED-NVF-TIANALKQN--VTKIEEAP 172 Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 +L +F++ E+ F++G LI +PF++IDM+VA+I++++GM+M+PP +SLPFKV+ F Sbjct: 173 DSLLTAAFVLGEVEIGFKMGILIYIPFIVIDMVVASILLSLGMIMIPPVLVSLPFKVLVF 232 Query: 229 VLIDGWSLLVENLVKSF 245 VL +GW ++ +LVKSF Sbjct: 233 VLANGWESIIVSLVKSF 249 >gi|238793338|ref|ZP_04636964.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia intermedia ATCC 29909] gi|238727307|gb|EEQ18835.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia intermedia ATCC 29909] Length = 216 Score = 137 bits (346), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 78/200 (39%), Positives = 127/200 (63%), Gaps = 16/200 (8%) Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRSIEMGIQPL 114 ++M T F + IVFS+LR +G+ VPPN+ I LAL +T ++M+P LD + +PL Sbjct: 24 MVMGTSFLKLSIVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVHARLQDEPL 83 Query: 115 MNNQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSS----HRNTDITKNDH 166 N+ +Q + E P+ F++ NT + ++ F D+ + +RN+ + N Sbjct: 84 PND---IGALLQHIDEHALVPYRDFLQRNTDTEQVTFFNDIVQTKWPERYRNS-VKPNSL 139 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 + IL+P+F +++L +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK++ Sbjct: 140 L---ILMPAFTLTQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMVSPITISLPFKLL 196 Query: 227 FFVLIDGWSLLVENLVKSFI 246 F+LIDGW LL+ LV S++ Sbjct: 197 IFILIDGWGLLLGQLVGSYL 216 >gi|27376930|ref|NP_768459.1| type III secretion system protein [Bradyrhizobium japonicum USDA 110] gi|12620526|gb|AAG60802.1|AF322012_107 RhcR [Bradyrhizobium japonicum] gi|27350072|dbj|BAC47084.1| RhcR protein [Bradyrhizobium japonicum USDA 110] Length = 221 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 76/202 (37%), Positives = 116/202 (57%), Gaps = 8/202 (3%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108 L + ++ T F + +V ++R +G S+PPN+V+ AL +T ++ +P +++ Sbjct: 18 LGLLAFAVVTTTAFIKVSVVLFLVRNALGTQSIPPNIVLYGAALILTVFISAPVFEQTYN 77 Query: 109 MGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH---SSHRNTDITK 163 P + Q + A + EP V ++ T E+ F+ S +T Sbjct: 78 RLTDPQLRYQSFDDWVMAAKEGQEPLRVHLKKFTNEEQRRFFLSSTEHVWSEEMRGSVTA 137 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 +D + IL+PSF+ISEL+R FEIGFL+ LPF+ ID+IV TI+MAMGM M+ PT IS+PF Sbjct: 138 DD---FSILVPSFLISELKRGFEIGFLLYLPFITIDLIVTTILMAMGMSMVSPTVISVPF 194 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K+ FV IDGWS L+ LV S+ Sbjct: 195 KLFLFVTIDGWSRLMHGLVLSY 216 >gi|330505666|ref|YP_004382535.1| flagellar biosynthesis protein FliP [Pseudomonas mendocina NK-01] gi|328919952|gb|AEB60783.1| flagellar biosynthesis protein FliP [Pseudomonas mendocina NK-01] Length = 250 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 83/200 (41%), Positives = 123/200 (61%), Gaps = 4/200 (2%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 I T+L P LL+M+TCF RFIIV +ILR +G+ PPN V+I +AL +T VM P Sbjct: 51 IMTLLGFLPALLMMMTCFTRFIIVLAILRQAIGLQQSPPNPVLIGIALCLTLLVMRPVWQ 110 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 P +QI+ + FM T + L + +A + D+ + Sbjct: 111 EMYTEAYVPFEADQISLEQGLGEGKRIISQFMLAQTSKNSLETLVALADEEMPD-DLAQL 169 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D + +L+P+F++SEL+ +F++GF+I +PFL+ID++VA+++MAMGMMML P ISLPFK Sbjct: 170 D---FSLLLPAFVLSELKTAFQLGFMIFVPFLVIDLVVASVLMAMGMMMLSPMMISLPFK 226 Query: 225 VIFFVLIDGWSLLVENLVKS 244 ++ FVL+DGW+LLV L S Sbjct: 227 LLVFVLVDGWTLLVGTLTTS 246 >gi|224531662|ref|ZP_03672294.1| flagellar biosynthetic protein FliP [Borrelia valaisiana VS116] gi|224511127|gb|EEF81533.1| flagellar biosynthetic protein FliP [Borrelia valaisiana VS116] Length = 254 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 74/199 (37%), Positives = 122/199 (61%), Gaps = 9/199 (4%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 +P L+++T F R IV +R + + PP +I+ LALF+T + M PT + + Sbjct: 61 SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIIMGLALFLTIFTMWPTFNVIYKQAY 120 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMR---NNTREKDLSLFMDMAHSSHRNTDITKN-DHI 167 PL ++I + P +FM ++ +++ LFM ++ N D KN + Sbjct: 121 LPLKESKINFDEFYNKGIAPLRIFMYKQMSDGSHEEIRLFMSIS-----NYDRPKNFSEV 175 Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227 +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP ISLPFK+I Sbjct: 176 PTHVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLIL 235 Query: 228 FVLIDGWSLLVENLVKSFI 246 FV++DGW+L+ L+KSF+ Sbjct: 236 FVMVDGWTLITSGLIKSFM 254 >gi|224534252|ref|ZP_03674830.1| flagellar biosynthetic protein FliP [Borrelia spielmanii A14S] gi|224514354|gb|EEF84670.1| flagellar biosynthetic protein FliP [Borrelia spielmanii A14S] Length = 254 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 73/199 (36%), Positives = 123/199 (61%), Gaps = 9/199 (4%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 +P L+++T F R IV +R + + PP +++ LALF+T + M PT + + Sbjct: 61 SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNVIYKQAY 120 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMR---NNTREKDLSLFMDMAHSSHRNTDITKN-DHI 167 PL ++I + P +FM ++ R +++ LFM ++ + D KN + Sbjct: 121 LPLKESKINFDEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSIS-----SYDRPKNFSEV 175 Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227 +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP ISLPFK+I Sbjct: 176 PTHVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLIL 235 Query: 228 FVLIDGWSLLVENLVKSFI 246 FV++DGW+L+ L+KSF+ Sbjct: 236 FVMVDGWTLITSGLIKSFM 254 >gi|119947195|ref|YP_944875.1| flagellar biosynthesis protein FliP [Psychromonas ingrahamii 37] gi|119865799|gb|ABM05276.1| flagellar biosynthetic protein FliP [Psychromonas ingrahamii 37] Length = 245 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 80/201 (39%), Positives = 122/201 (60%), Gaps = 4/201 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T LS P ++M TCF R IIV +ILR +G+ PPN V++ +AL ++ +M P Sbjct: 48 LMTALSFIPAFILMCTCFTRIIIVLAILRQALGLQQSPPNQVLLGIALALSILIMKPVWT 107 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + P I+ TA +P FM T L M++A K Sbjct: 108 DVYDNAFVPYDAGDISLLTAASIAEKPVREFMLRQTHSSSLEQMMNIAGEDEN----VKP 163 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + I + I++P+F+ISEL+ +F+IGF++ +PFLIID++VA+++M+MGMMML P +SLPFK Sbjct: 164 EDISFAIILPAFVISELKTAFQIGFMLFMPFLIIDLVVASVLMSMGMMMLSPLIVSLPFK 223 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FVL+DGW++LV +L SF Sbjct: 224 LLAFVLVDGWTMLVGSLSTSF 244 >gi|283782107|ref|YP_003372862.1| flagellar biosynthetic protein FliP [Pirellula staleyi DSM 6068] gi|283440560|gb|ADB19002.1| flagellar biosynthetic protein FliP [Pirellula staleyi DSM 6068] Length = 297 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 82/207 (39%), Positives = 127/207 (61%), Gaps = 6/207 (2%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T+LS+AP +L+M T F R ++V +LR +G +PP+ VI +LA+F+T +M+PT + Sbjct: 87 LLTVLSLAPAILLMTTSFVRIVVVLGLLRQALGTNQLPPSQVITALAMFLTLLIMTPTWN 146 Query: 105 RSIEMGIQPLMNN-QITETTAIQRVAEPFWVFMRNN----TREKDLSLFMDMAHSSHRNT 159 I+P + +T A R + P FM D+ LF + +R Sbjct: 147 SVYHEAIEPYTSGADLTPEEAWNRGSLPIKRFMSRQIEVAGNSDDVWLFYEYLPEENRPA 206 Query: 160 DITKN-DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 + D + +L+P+FM+SEL+ SF IGF I LPFLI+D++V+++ ++MGMMMLPP Sbjct: 207 KPPETYDEVPLSVLLPAFMLSELKTSFLIGFQIYLPFLILDLVVSSVTISMGMMMLPPVM 266 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLP K++ FVL+DGW+L V L++SF Sbjct: 267 ISLPLKLLLFVLVDGWTLTVRMLLESF 293 >gi|76097667|gb|ABA39515.1| flagellar protein [Paenibacillus larvae subsp. larvae] Length = 140 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 64/144 (44%), Positives = 101/144 (70%), Gaps = 4/144 (2%) Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 ++ LALF T ++M+PTL ++ +QP + ++ +T A+++ AEP FM ++TR KDL Sbjct: 1 LVGLALFPTLFIMAPTLGDINQVAVQPYIKGELNQTQALEKAAEPIKKFMWSHTRPKDLQ 60 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 LF+D +++ N + L+P+F ISEL+ +F++GF+I +PFL+IDMI+++ + Sbjct: 61 LFLDYSNAEKPNGP----EDTPIAALVPAFAISELKTAFQMGFMIFIPFLVIDMIISSTL 116 Query: 207 MAMGMMMLPPTSISLPFKVIFFVL 230 MAMGMMMLPP ISLPFK++ FVL Sbjct: 117 MAMGMMMLPPVMISLPFKILLFVL 140 >gi|33593240|ref|NP_880884.1| type III secretion system protein [Bordetella pertussis Tohama I] gi|29603234|emb|CAC79579.1| bscR [Bordetella pertussis Tohama I] gi|33563615|emb|CAE42516.1| putative type III secretion protein [Bordetella pertussis Tohama I] gi|332382649|gb|AEE67496.1| type III secretion system protein [Bordetella pertussis CS] Length = 223 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 71/207 (34%), Positives = 123/207 (59%), Gaps = 18/207 (8%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P++++M T F + +V +++R +G+ VPPN+ + LAL ++ YVM+P + R I +Q Sbjct: 20 PLIVVMTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHR-IGTEVQ 78 Query: 113 PLMNNQITETTAI-----------QRVAEPFWVFMRNNTREKDLSLFMDMAH---SSHRN 158 L TA +R P FM N++ F+ A + Sbjct: 79 ALTAQAGESGTAAPMALDAVLGVAERGVGPLRAFMLRNSQPAQRDFFLRTARHLWGEEAS 138 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 D+++++ + +L P+F++SEL +F++GFL+ LPF+IID+IV+ I++AMGMMM+ P + Sbjct: 139 RDLSEDNLL---VLTPAFLVSELTAAFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVT 195 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 IS+P K+ FV++DGW+ L++ LV S+ Sbjct: 196 ISMPLKLFLFVMVDGWTRLIQGLVLSY 222 >gi|216264092|ref|ZP_03436086.1| flagellar biosynthetic protein FliP [Borrelia afzelii ACA-1] gi|215980136|gb|EEC20958.1| flagellar biosynthetic protein FliP [Borrelia afzelii ACA-1] Length = 254 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 73/199 (36%), Positives = 123/199 (61%), Gaps = 9/199 (4%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 +P L+++T F R IV +R + + PP +++ LALF+T + M PT + + Sbjct: 61 SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNVIYKQAY 120 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMR---NNTREKDLSLFMDMAHSSHRNTDITKN-DHI 167 PL ++I + P +FM ++ R +++ LFM ++ + D KN + Sbjct: 121 LPLKESKINFDEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSIS-----SYDRPKNFSEV 175 Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227 +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP ISLPFK+I Sbjct: 176 PTHVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLIL 235 Query: 228 FVLIDGWSLLVENLVKSFI 246 FV++DGW+L+ L+KSF+ Sbjct: 236 FVMVDGWTLITSGLIKSFM 254 >gi|297620337|ref|YP_003708474.1| type III secretion inner membrane protein SctR [Waddlia chondrophila WSU 86-1044] gi|297375638|gb|ADI37468.1| type III secretion inner membrane protein SctR [Waddlia chondrophila WSU 86-1044] Length = 296 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 74/216 (34%), Positives = 125/216 (57%), Gaps = 17/216 (7%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 + TILS+ P +++++T F + +IV S+LR +G+ PPN +I + L ++ ++M PT+ Sbjct: 83 AVLTILSMLPFIVMILTSFMKIVIVLSLLRNALGVQQAPPNQIINGVGLMLSMFIMYPTV 142 Query: 104 DRSIEMGIQPLMNNQITET-----------TAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152 E+ + Q ++ T EP F+ +N+ + +LF MA Sbjct: 143 VEMYEVSQKATQEMQAPDSVISSGSSTYILTIADATKEPLRTFLIDNSSVRHRALFFRMA 202 Query: 153 HS---SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 + ++ D I I++PSF+ S+L+ +FEIG LI +PF +ID++ + I++AM Sbjct: 203 YKVLPEKYRPNLKPEDFI---IVVPSFITSQLKDAFEIGVLIYIPFFVIDLVTSNILLAM 259 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMML P +IS+P K+ V++DGW+LLVE LV +F Sbjct: 260 GMMMLSPVTISMPLKLFLLVMLDGWTLLVEGLVNTF 295 >gi|320193801|gb|EFW68434.1| type III secretion system protein [Escherichia coli WV_060327] Length = 217 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 72/199 (36%), Positives = 123/199 (61%), Gaps = 8/199 (4%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 +F +LS+ PI +++ T F + IV IL+ +G+ VPPN+ + S++L +T ++MSP + Sbjct: 17 VFFLLSLLPIFVVVGTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIIL 76 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNTD 160 + + Q +N T++ Q+V E P+ F+ NT + ++ F A N Sbjct: 77 QINDNISQEQIN--YTDSDFFQKVDEKILSPYRGFLEKNTEKDNVEFFERAAQKKLGNET 134 Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220 I K D + IL+P+F + +L +F+IGFL+ LPF+ ID+I++ I++A+GMMM+ P +IS Sbjct: 135 ILKKDSL--FILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTIS 192 Query: 221 LPFKVIFFVLIDGWSLLVE 239 +PFK++ F+L+ GW L E Sbjct: 193 IPFKILLFILVGGWQKLFE 211 >gi|194426341|ref|ZP_03058896.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli B171] gi|260845712|ref|YP_003223490.1| T3SS structure protein EscR [Escherichia coli O103:H2 str. 12009] gi|260858247|ref|YP_003232138.1| T3SS structure protein EscR [Escherichia coli O26:H11 str. 11368] gi|13447701|gb|AAK26700.1|AF200363_8 EscR [Escherichia coli] gi|18034505|gb|AAL57527.1|AF453441_11 EscR [Escherichia coli] gi|17384635|emb|CAC81847.1| EscR protein [Escherichia coli] gi|57434472|emb|CAI43889.1| EscR protein [Escherichia coli] gi|189473194|gb|ACD99645.1| putative EscR [Escherichia coli] gi|194415649|gb|EDX31916.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli B171] gi|195183213|dbj|BAG66758.1| T3SS structure protein EscR [Escherichia coli O111:H-] gi|254692325|emb|CAR47966.1| EscR protein [Escherichia coli] gi|254692393|emb|CAR48036.1| EscR protein [Escherichia coli] gi|257756896|dbj|BAI28398.1| T3SS structure protein EscR [Escherichia coli O26:H11 str. 11368] gi|257760859|dbj|BAI32356.1| T3SS structure protein EscR [Escherichia coli O103:H2 str. 12009] Length = 217 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 72/200 (36%), Positives = 124/200 (62%), Gaps = 10/200 (5%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-L 103 +F +LS+ PI +++ T F + IV IL+ +G+ VPPN+ + S++L +T ++MSP L Sbjct: 17 VFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIIL 76 Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 + + +P+ T++ Q+V E P+ F+ NT ++++ F A N Sbjct: 77 QINDNISQEPI---NYTDSDFFQKVDEKILSPYRGFLEKNTEKENVEFFERAAQKKLGNE 133 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 I K D + IL+P+F + +L +F+IGFL+ LPF+ ID+I++ I++A+GMMM+ P +I Sbjct: 134 TILKKDSL--FILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTI 191 Query: 220 SLPFKVIFFVLIDGWSLLVE 239 S+PFK++ F+L+ GW L E Sbjct: 192 SIPFKILLFILVGGWQKLFE 211 >gi|27550057|gb|AAO18040.1| LscR [Photorhabdus luminescens] Length = 217 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 73/196 (37%), Positives = 121/196 (61%), Gaps = 12/196 (6%) Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQP-LM 115 +M T F + +VFS+LR +G+ +PPN+ + LA+ +T YVM+P + Q L Sbjct: 25 VMATSFLKLAVVFSLLRNALGVQQIPPNMAMYGLAIILTIYVMAP-----VGFATQDYLR 79 Query: 116 NNQITETTA--IQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169 N+++ + A +++ E P+ F++ + + + + F+D + + + Sbjct: 80 QNEVSFSNAQSVEKFVEEGLTPYRNFLKQHIKPSERTFFIDSTRQIWPSQYADRLEPDSL 139 Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229 IL+PSF +SEL R+FEIGFL+ LPF+ ID+I++ I++AMGMMM+ P +ISLPFK++ FV Sbjct: 140 LILLPSFTVSELTRAFEIGFLLYLPFIAIDLIISNILLAMGMMMVSPMTISLPFKLLLFV 199 Query: 230 LIDGWSLLVENLVKSF 245 L+DGW+ L LV S+ Sbjct: 200 LLDGWTRLTHGLVISY 215 >gi|146309436|ref|YP_001189901.1| flagellar biosynthesis protein FliP [Pseudomonas mendocina ymp] gi|145577637|gb|ABP87169.1| flagellar biosynthetic protein FliP [Pseudomonas mendocina ymp] Length = 250 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 82/200 (41%), Positives = 122/200 (61%), Gaps = 4/200 (2%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 I T+L P +L+M+TCF RFIIV +ILR +G+ PPN V+I +AL +T VM P Sbjct: 51 IMTLLGFLPAMLMMMTCFTRFIIVLAILRQAIGLQQSPPNPVLIGIALCLTLLVMRPVWQ 110 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 P +QI+ + FM T + L + +A D+ + Sbjct: 111 EMYTEAYVPFEADQISLEQGLGEGKRIISQFMLAQTSKNSLETLVALA-GEELPEDLAQL 169 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D + +L+P+F++SEL+ +F++GF+I +PFL+ID++VA+++MAMGMMML P ISLPFK Sbjct: 170 D---FSLLLPAFVLSELKTAFQLGFMIFVPFLVIDLVVASVLMAMGMMMLSPMMISLPFK 226 Query: 225 VIFFVLIDGWSLLVENLVKS 244 ++ FVL+DGW+LLV L S Sbjct: 227 LLVFVLVDGWTLLVGTLTSS 246 >gi|238785155|ref|ZP_04629149.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia bercovieri ATCC 43970] gi|238713970|gb|EEQ05988.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia bercovieri ATCC 43970] Length = 216 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 77/194 (39%), Positives = 120/194 (61%), Gaps = 6/194 (3%) Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRSIEMGIQPLM 115 +M T F + IVFS+LR +G+ VPPN+ I LAL +T ++M+P LD + +PL Sbjct: 25 VMGTSFLKLSIVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVHARLQDEPLP 84 Query: 116 NNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHSS--HRNTDITKNDHIEYRIL 172 N I + A P+ F++ NT + + F D+ + R D K + IL Sbjct: 85 NEIGALLEHIDKHALGPYRDFLQRNTDAEQATFFNDIVQTKWPERLRDSVKPSSL--LIL 142 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 +P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK++ F+L++ Sbjct: 143 MPAFTLSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMVSPITISLPFKLLIFILVN 202 Query: 233 GWSLLVENLVKSFI 246 GW LL+ LV S++ Sbjct: 203 GWGLLMGQLVGSYL 216 >gi|15804244|ref|NP_290283.1| type III secretion system protein [Escherichia coli O157:H7 EDL933] gi|168748640|ref|ZP_02773662.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC4113] gi|168753533|ref|ZP_02778540.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC4401] gi|168759830|ref|ZP_02784837.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC4501] gi|168766130|ref|ZP_02791137.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC4486] gi|168772321|ref|ZP_02797328.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC4196] gi|168779865|ref|ZP_02804872.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC4076] gi|168785598|ref|ZP_02810605.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC869] gi|168798679|ref|ZP_02823686.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC508] gi|193069204|ref|ZP_03050161.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli E110019] gi|195936266|ref|ZP_03081648.1| type III secretion system protein [Escherichia coli O157:H7 str. EC4024] gi|208806674|ref|ZP_03249011.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC4206] gi|208812050|ref|ZP_03253379.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC4045] gi|208819434|ref|ZP_03259754.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC4042] gi|209398112|ref|YP_002273179.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC4115] gi|215488994|ref|YP_002331425.1| type III secretion system protein [Escherichia coli O127:H6 str. E2348/69] gi|217324318|ref|ZP_03440402.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. TW14588] gi|254795658|ref|YP_003080495.1| type III secretion system protein [Escherichia coli O157:H7 str. TW14359] gi|260869701|ref|YP_003236103.1| T3SS structure protein EscR [Escherichia coli O111:H- str. 11128] gi|261225802|ref|ZP_05940083.1| LEE-encoded type III secretion system factor [Escherichia coli O157:H7 str. FRIK2000] gi|261258847|ref|ZP_05951380.1| T3SS structure protein EscR [Escherichia coli O157:H7 str. FRIK966] gi|291285071|ref|YP_003501889.1| Type III secretion system EscR protein [Escherichia coli O55:H7 str. CB9615] gi|312967934|ref|ZP_07782146.1| conserved hypothetical protein [Escherichia coli 2362-75] gi|12518477|gb|AAG58847.1|AE005597_5 escR [Escherichia coli O157:H7 str. EDL933] gi|3414917|gb|AAC31528.1| L0049 [Escherichia coli] gi|54311600|emb|CAG17515.1| EscR protein [Escherichia coli] gi|187771664|gb|EDU35508.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC4196] gi|188016994|gb|EDU55116.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC4113] gi|189002477|gb|EDU71463.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC4076] gi|189358993|gb|EDU77412.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC4401] gi|189364379|gb|EDU82798.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC4486] gi|189369636|gb|EDU88052.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC4501] gi|189374319|gb|EDU92735.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC869] gi|189378860|gb|EDU97276.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC508] gi|192957528|gb|EDV87974.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli E110019] gi|195957534|gb|ACG59645.1| type III secretion system protein EscR [Escherichia coli O157:H7] gi|195957593|gb|ACG59703.1| type III secretion system protein EscR [Escherichia coli] gi|195957650|gb|ACG59759.1| type III secretion system protein EscR [Escherichia coli] gi|208726475|gb|EDZ76076.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC4206] gi|208733327|gb|EDZ82014.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC4045] gi|208739557|gb|EDZ87239.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC4042] gi|209159512|gb|ACI36945.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC4115] gi|215267066|emb|CAS11511.1| T3SS structure protein EscR [Escherichia coli O127:H6 str. E2348/69] gi|217320539|gb|EEC28963.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. TW14588] gi|221361440|emb|CAX18593.1| Type III secretion system, LEE associated [Escherichia coli] gi|221361497|emb|CAX18668.1| Type III secretion system, LEE associated [Escherichia coli] gi|221361558|emb|CAX18748.1| Type III secretion system, LEE associated [Escherichia coli] gi|254595058|gb|ACT74419.1| LEE-encoded type III secretion system factor [Escherichia coli O157:H7 str. TW14359] gi|255348331|gb|ACU09473.1| type III secretion system protein EscR [Escherichia coli] gi|257766057|dbj|BAI37552.1| T3SS structure protein EscR [Escherichia coli O111:H- str. 11128] gi|290764944|gb|ADD58905.1| Type III secretion system EscR protein [Escherichia coli O55:H7 str. CB9615] gi|312287495|gb|EFR15403.1| conserved hypothetical protein [Escherichia coli 2362-75] gi|320639373|gb|EFX08988.1| type III secretion system protein YscR [Escherichia coli O157:H7 str. G5101] gi|320644817|gb|EFX13853.1| type III secretion system protein YscR [Escherichia coli O157:H- str. 493-89] gi|320650081|gb|EFX18577.1| type III secretion system protein YscR [Escherichia coli O157:H- str. H 2687] gi|320655428|gb|EFX23363.1| type III secretion system protein YscR [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661054|gb|EFX28490.1| type III secretion system protein YscR [Escherichia coli O55:H7 str. USDA 5905] gi|320666180|gb|EFX33186.1| type III secretion system protein YscR [Escherichia coli O157:H7 str. LSU-61] Length = 217 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 72/200 (36%), Positives = 123/200 (61%), Gaps = 10/200 (5%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-L 103 +F +LS+ PI +++ T F + IV IL+ +G+ VPPN+ + S++L +T ++MSP L Sbjct: 17 VFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIIL 76 Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 + + +P+ T++ Q+V E P+ F+ NT + ++ F A N Sbjct: 77 QINDNISQEPI---NYTDSDFFQKVDEKILSPYRGFLEKNTEKDNVEFFERAAQKKLGNE 133 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 I K D + IL+P+F + +L +F+IGFL+ LPF+ ID+I++ I++A+GMMM+ P +I Sbjct: 134 TILKKDSL--FILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTI 191 Query: 220 SLPFKVIFFVLIDGWSLLVE 239 S+PFK++ F+L+ GW L E Sbjct: 192 SIPFKILLFILVGGWQKLFE 211 >gi|317407761|gb|EFV87688.1| type III secretion protein [Achromobacter xylosoxidans C54] Length = 230 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 127/221 (57%), Gaps = 25/221 (11%) Query: 46 FTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDR 105 +++++ P+ ++M T F + +V ++R +G+ PPN+ + LA+ ++ YVM+P + Sbjct: 13 LSMVALVPLAVVMTTSFLKISVVLVLVRNALGIQQAPPNMALYGLAVILSAYVMAP-VGY 71 Query: 106 SIEMGIQPLMNNQITETTA------------------IQRVAEPFWVFMRNNTREKDLSL 147 I ++ + + TE+ A R AEP FM N+R + Sbjct: 72 QISAELRAVASAPATESGAPGTQGAQAGSSLENFLDVAARAAEPMRGFMLKNSRAEQRDF 131 Query: 148 FMDMAH---SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204 F+ A + + + D I +L+P+F++SEL +F++GFL+ LPF++ID+IV+ Sbjct: 132 FVRTARQLWGPEQAAALRETDLI---VLVPAFLLSELTVAFQVGFLLYLPFVVIDLIVSN 188 Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 I+MAMGMMM+ P +IS+P K+ FV++DGWS L++ LV S+ Sbjct: 189 ILMAMGMMMVSPVTISMPLKLFLFVMVDGWSRLIQGLVLSY 229 >gi|86157131|ref|YP_463916.1| type III secretion system protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85773642|gb|ABC80479.1| type III secretion system inner membrane P protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 225 Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 71/189 (37%), Positives = 113/189 (59%), Gaps = 2/189 (1%) Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 M+T F + +V SI R+ +G VPPN V+ LAL +T VM+P +R+ + Sbjct: 36 MLTSFLKISVVLSIARSALGAPQVPPNTVVTGLALVLTLLVMAPVAERAAALARPAPGER 95 Query: 118 QITET-TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176 + T A+QR A P F+ R D + F+D+A R D + +L P+F Sbjct: 96 GLPATLAALQRGAGPVKAFLARFARPDDRAAFLDVARR-LRAPDAAAPADDDLAVLAPAF 154 Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236 ++SELRR+F IGFL+ +PFL++D++++ +++A+G+ L PTS++LPFK++ FV +DGW L Sbjct: 155 VVSELRRAFTIGFLVFVPFLVVDLVISNVLLALGLTQLSPTSVALPFKLLLFVAVDGWKL 214 Query: 237 LVENLVKSF 245 L L S+ Sbjct: 215 LARALALSY 223 >gi|317486826|ref|ZP_07945642.1| YscR/HrcR family type III secretion apparatus protein [Bilophila wadsworthia 3_1_6] gi|316921989|gb|EFV43259.1| YscR/HrcR family type III secretion apparatus protein [Bilophila wadsworthia 3_1_6] Length = 216 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 69/205 (33%), Positives = 132/205 (64%), Gaps = 9/205 (4%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 +L +AP L+MVT + + ++V S++R +G+ VPP +V+ LA+ ++ ++M+P + + Sbjct: 14 ALLGLAPFFLMMVTSYVKIVVVTSLVRNALGVQQVPPAMVMNGLAIILSLFIMAPMMMST 73 Query: 107 IEMGIQPLMNNQITETTAI---QRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTD 160 +++ + ++ + + I +++ P F+ +NT + L FM A ++ Sbjct: 74 MDIAGKLQISAEPSPKEVIGIVDKLSPPLRKFLSDNTEDGVLRAFMSTAKRIWPKEQHDQ 133 Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220 I+K++ + IL+P+F ISEL ++F++GFL+ LPF+ ID+I++ I++AMGMMM+ P +IS Sbjct: 134 ISKDNML---ILVPAFTISELTKAFQVGFLLYLPFIAIDLIISNILLAMGMMMVSPMTIS 190 Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245 LPFK++ FV +DGW + + L+ S+ Sbjct: 191 LPFKLLLFVTLDGWLKISQGLLLSY 215 >gi|320103855|ref|YP_004179446.1| type III secretion system inner membrane P protein [Isosphaera pallida ATCC 43644] gi|319751137|gb|ADV62897.1| type III secretion system inner membrane P protein [Isosphaera pallida ATCC 43644] Length = 247 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 73/222 (32%), Positives = 123/222 (55%), Gaps = 8/222 (3%) Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88 +P DL+ S + G+ I S+AP ++M+T + R IV ++LR +G +P N V++ Sbjct: 27 LPPDLARSA---ASVGVVAIASLAPAAVLMLTAYVRISIVLALLRQALGSPQIPGNQVVM 83 Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN----TREKD 144 L++ +T VM P D E I+P ++ A AEP FM + E+ Sbjct: 84 MLSILLTILVMKPVADVVAERAIRPFAAGELDYAQAFAAGAEPVKRFMVKQIVACSNERY 143 Query: 145 LSLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVA 203 L D+A T + D + R++ +F+ISE+ + +GF I LPFL+ID++ A Sbjct: 144 LITLHDLAEPPETRTHQPEYLDELPLRVVAAAFLISEINVALWMGFAIYLPFLVIDLVTA 203 Query: 204 TIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++ AMG+ +LPP +++P K++ FVL +GW L+ + L++SF Sbjct: 204 AVLAAMGLYLLPPAQVAIPLKLMVFVLAEGWWLVAQTLLRSF 245 >gi|37527633|ref|NP_930977.1| type III secretion system protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787068|emb|CAE16143.1| Type III secretion component protein SctR [Photorhabdus luminescens subsp. laumondii TTO1] Length = 217 Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 71/196 (36%), Positives = 119/196 (60%), Gaps = 12/196 (6%) Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQP-LM 115 +M T F + +VFS+LR +G+ +PPN+ + LA+ +T YVM+P + Q L Sbjct: 25 VMATSFLKLAVVFSLLRNALGVQQIPPNMAMYGLAIILTIYVMAP-----VGFATQDYLR 79 Query: 116 NNQITETTA------IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169 N+++ + A ++ P+ F++ + + + + F+D + + + Sbjct: 80 QNEVSFSNAQSVDKFVEEGLTPYRNFLKQHIKPSERTFFIDSTRQIWPSQYADRLEPDSL 139 Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229 IL+P+F +SEL R+FEIGFL+ LPF+ ID+I++ I++AMGMMM+ P +ISLPFK++ FV Sbjct: 140 LILLPAFTVSELTRAFEIGFLLYLPFIAIDLIISNILLAMGMMMVSPMTISLPFKLLLFV 199 Query: 230 LIDGWSLLVENLVKSF 245 L+DGW+ L LV S+ Sbjct: 200 LLDGWTRLTHGLVISY 215 >gi|218887527|ref|YP_002436848.1| type III secretion system protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758481|gb|ACL09380.1| Yop virulence translocation R [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 216 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 75/208 (36%), Positives = 131/208 (62%), Gaps = 15/208 (7%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP----T 102 +L +AP L+MVT + + ++V S++R +G+ VPP +V+ LA+ ++ ++M+P T Sbjct: 14 ALLGLAPFFLMMVTSYVKIVVVTSLVRNALGVQQVPPAMVMNGLAIILSIFIMAPMVEST 73 Query: 103 LD--RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHR 157 LD +++ + QP ++ E + R + P F+ N +K ++ FM A R Sbjct: 74 LDILKTVRVSEQP-EPREVVEL--LDRASPPLRDFLSRNADDKVITAFMGTAKRIWPKER 130 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + I + + + IL+P+F ISEL ++F+IGFL+ LPF+ ID+I++ I++AMGMMM+ P Sbjct: 131 HDTIRRENLL---ILVPAFTISELTKAFQIGFLLYLPFVAIDLIISNILLAMGMMMVSPM 187 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 +ISLPFK++ FV +DGW + + L+ S+ Sbjct: 188 TISLPFKLLLFVTLDGWLKISQGLLLSY 215 >gi|74317113|ref|YP_314853.1| flagellar biosynthesis protein FliP [Thiobacillus denitrificans ATCC 25259] gi|74056608|gb|AAZ97048.1| flagellar transport protein FliP [Thiobacillus denitrificans ATCC 25259] Length = 241 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 74/186 (39%), Positives = 114/186 (61%), Gaps = 4/186 (2%) Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R +V +LR G+G + PPNLV+ LA+ +T +VMSP L +P + + Sbjct: 60 TAFTRIAVVLFLLRQGIGSPTAPPNLVLTGLAVLLTLFVMSPALKTINADAYEPYLAGTL 119 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 A A P FM + TR +DL+LF++ D + + + L P+F+ S Sbjct: 120 ALDEAAAEAAAPLKRFMLHQTRAEDLALFVE----DDPTVDPRRAETVPLAALAPAFLTS 175 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+ +F+IGF+++LPFL+ID++VA ++ A+GM+MLPP +SLP K++ FV +DGW LLV Sbjct: 176 ELKTAFQIGFMVVLPFLVIDLVVAAVLTALGMIMLPPQLVSLPLKLLLFVAVDGWHLLVG 235 Query: 240 NLVKSF 245 +L+ SF Sbjct: 236 SLIGSF 241 >gi|16520044|ref|NP_444164.1| type III secretion system protein [Sinorhizobium fredii NGR234] gi|2494571|sp|P55720|Y4YL_RHISN RecName: Full=Probable translocation protein y4yL gi|2182737|gb|AAB91951.1| innermembrane protein RhcR; component of type III secretion apparatus [Sinorhizobium fredii NGR234] Length = 222 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 71/195 (36%), Positives = 117/195 (60%), Gaps = 8/195 (4%) Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115 ++ T F + +V ++R +G ++PPN+V+ + AL +T +V +P +++ + P + Sbjct: 25 VVTTTAFVKVSVVLFLVRNALGTQTIPPNIVLYAAALILTMFVSAPVAEQTYDRITDPRL 84 Query: 116 NNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYR 170 Q + A + ++P ++ T E+ F+ +T +D + Sbjct: 85 RYQSLDDWAEAAKAGSQPLLEHLKKFTNEEQRRFFLSSTEKVWPEEMRAGVTADD---FA 141 Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230 IL+PSF+ISEL+R+FEIGFL+ LPF++ID+IV TI+MAMGM M+ PT I++PFK+ FV Sbjct: 142 ILVPSFLISELKRAFEIGFLLYLPFIVIDLIVTTILMAMGMSMVSPTIIAVPFKLFLFVA 201 Query: 231 IDGWSLLVENLVKSF 245 IDGWS L+ LV S+ Sbjct: 202 IDGWSRLMHGLVLSY 216 >gi|282891201|ref|ZP_06299704.1| type III secretion inner membrane protein SctR [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498894|gb|EFB41210.1| type III secretion inner membrane protein SctR [Parachlamydia acanthamoebae str. Hall's coccus] Length = 319 Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 84/265 (31%), Positives = 148/265 (55%), Gaps = 35/265 (13%) Query: 12 VTPELVFAKSSLH-DVMNIPADLSISTWIVRTFG---------------IFTILSIAPIL 55 TP + A S+ + N+P S++ ++ G + TILS+ P + Sbjct: 58 ATPAVPRASSTSNPSTRNLPKKQSVTEQLLNNQGGMDDIKRPSLITQAIVLTILSLLPFI 117 Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-------DRSIE 108 ++++T F + +IV S+LR+ +G+ PPN +I +A ++ ++M PT+ IE Sbjct: 118 IMILTSFLKIVIVLSLLRSALGVQQAPPNQIINGVAFMLSLFIMYPTVLKMYDAAQSVIE 177 Query: 109 MGIQPLMNNQITETTAIQRVA----EPFWVFMRNNTREKDLSLFMDMAH----SSHRNTD 160 P + + I VA EP +F++ N+ K +LF MA+ ++R T Sbjct: 178 STRAPDSLVSVESSKYIVDVADASKEPLRMFLKRNSSVKHQALFYRMAYRILPENYRAT- 236 Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220 K D ++ I++P+++ S+L+ +FEIG LI +PF +ID++ + I++AMGMMML P +IS Sbjct: 237 -LKPD--DFMIVVPAYITSQLKDAFEIGVLIYIPFFVIDLVTSNILLAMGMMMLSPVTIS 293 Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245 +P K+ V++DGW+LL++ LV +F Sbjct: 294 MPLKLFLLVMLDGWTLLIDGLVNTF 318 >gi|197121155|ref|YP_002133106.1| type III secretion system protein [Anaeromyxobacter sp. K] gi|220915856|ref|YP_002491160.1| type III secretion system inner membrane P protein [Anaeromyxobacter dehalogenans 2CP-1] gi|196171004|gb|ACG71977.1| type III secretion system inner membrane P protein [Anaeromyxobacter sp. K] gi|219953710|gb|ACL64094.1| type III secretion system inner membrane P protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 225 Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 70/189 (37%), Positives = 113/189 (59%), Gaps = 2/189 (1%) Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 M+T F + +V SI R+ +G VPPN V+ LAL +T VM+P +R+ + Sbjct: 36 MLTSFLKISVVLSIARSALGAPQVPPNTVVTGLALVLTMLVMAPVAERAAALARPAPGER 95 Query: 118 QITET-TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176 + + A+QR A P F+ R D + F+D+A R D + +L P+F Sbjct: 96 GLAASLAALQRGAGPVKAFLARFARPDDRAAFLDVARR-LRAPDAAPPADDDLAVLAPAF 154 Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236 ++SELRR+F IGFL+ +PFL++D++++ +++A+G+ L PTS++LPFK++ FV +DGW L Sbjct: 155 VVSELRRAFTIGFLVFVPFLVVDLVISNVLLALGLTQLSPTSVALPFKLLLFVAVDGWKL 214 Query: 237 LVENLVKSF 245 L L S+ Sbjct: 215 LARALALSY 223 >gi|111115100|ref|YP_709718.1| flagellar biosynthesis protein FliP [Borrelia afzelii PKo] gi|110890374|gb|ABH01542.1| flagellar biosynthesis protein [Borrelia afzelii PKo] Length = 254 Score = 134 bits (338), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 72/199 (36%), Positives = 122/199 (61%), Gaps = 9/199 (4%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 +P L+++T F R IV +R + + PP +++ LALF+T + M PT + + Sbjct: 61 SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNVIYKQAY 120 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMR---NNTREKDLSLFMDMAHSSHRNTDITKN-DHI 167 PL ++I + P +FM ++ R +++ LFM ++ + D KN + Sbjct: 121 LPLKESKINFDEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSIS-----SYDRPKNFSEV 175 Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227 +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP ISLP K+I Sbjct: 176 PTHVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPLKLIL 235 Query: 228 FVLIDGWSLLVENLVKSFI 246 FV++DGW+L+ L+KSF+ Sbjct: 236 FVMVDGWTLITSGLIKSFM 254 >gi|283786652|ref|YP_003366517.1| T3SS structural protein EscR [Citrobacter rodentium ICC168] gi|15723907|gb|AAL06354.1|AF311901_6 EscR [Citrobacter rodentium] gi|282950106|emb|CBG89741.1| T3SS structural protein EscR [Citrobacter rodentium ICC168] Length = 217 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 70/195 (35%), Positives = 122/195 (62%), Gaps = 10/195 (5%) Query: 50 SIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRSIE 108 S+ PI +++ T F + IV IL+ +G+ VPPN+ + S++L +T ++MSP L + Sbjct: 22 SLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTIFIMSPIILQINDN 81 Query: 109 MGIQPLMNNQITETTAIQRVA----EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + +P+ T++ Q+V P+ +F+ NNT ++++ F ++A N K Sbjct: 82 ISQEPI---NYTDSDFYQKVDGKIISPYRIFLENNTNKENIDFFENVAKKKLGNETSLKK 138 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D + IL+P+F + +L +F+IGFL+ LPF+ ID+I++ I++A+GMMM+ P +IS+PFK Sbjct: 139 DSL--FILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFK 196 Query: 225 VIFFVLIDGWSLLVE 239 ++ F+LI GW L E Sbjct: 197 ILLFILIGGWQKLFE 211 >gi|212702682|ref|ZP_03310810.1| hypothetical protein DESPIG_00710 [Desulfovibrio piger ATCC 29098] gi|212673954|gb|EEB34437.1| hypothetical protein DESPIG_00710 [Desulfovibrio piger ATCC 29098] Length = 218 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 75/201 (37%), Positives = 125/201 (62%), Gaps = 13/201 (6%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP-TLDRSIEMGI 111 P LL+MVT + + ++V S++R +G+ VPP +V+ LA+ +T ++M+P +D + Sbjct: 22 PFLLMMVTSYVKIVVVTSLVRNALGVQQVPPAMVMNGLAIILTVFIMAPVAMDTKALLEE 81 Query: 112 QPLMNN----QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKN 164 Q N ++ ET +Q V+ P F+ NT L FM A H+ IT++ Sbjct: 82 QRFSANPKPSEMLET--LQAVSPPLRQFLEKNTSPAILQEFMGTAQRIWPEHQRQSITRD 139 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + IL+P+F I+EL ++F+IGFL+ LPF+ ID+I++ +++AMGMMM+ P +ISLPFK Sbjct: 140 NLF---ILVPAFTITELTKAFQIGFLLYLPFVAIDLIISNVLLAMGMMMVSPMTISLPFK 196 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FV +DGW + + L+ S+ Sbjct: 197 LLLFVTLDGWLKISQGLLLSY 217 >gi|167841181|ref|ZP_02467865.1| type III secretion system protein [Burkholderia thailandensis MSMB43] Length = 216 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 78/205 (38%), Positives = 125/205 (60%), Gaps = 14/205 (6%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT----LD 104 LSI P+L+++ + F + +VF++LR +G +PPN+ + LAL +T ++M+P D Sbjct: 17 LSILPLLMVLGSSFLKLAVVFALLRNALGTQQIPPNIALYGLALVLTLFIMAPVGLAIQD 76 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSS----HRNTD 160 E +Q L + Q T+ +A P+ F+ NT + F D+ H + +RN Sbjct: 77 NLAEHPVQ-LDDKQFTQQVETTILA-PYRDFLARNTARAQVRFFADIGHRTWPEPYRNR- 133 Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220 I + I +LIP+F IS+L +F+IG L+ LPF+ ID+IV+ +++AMGMMM+ P +I+ Sbjct: 134 IPDDSLI---VLIPAFAISQLIEAFKIGLLLFLPFVAIDLIVSNVLLAMGMMMVSPMTIA 190 Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245 LP K++ FVLI+GW L+ LV SF Sbjct: 191 LPLKLLVFVLINGWEKLLGQLVLSF 215 >gi|1648936|gb|AAB17684.1| putative [Sinorhizobium fredii] Length = 249 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 71/195 (36%), Positives = 117/195 (60%), Gaps = 8/195 (4%) Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115 ++ T F + +V ++R +G ++PPN+V+ + AL +T +V +P +++ + P + Sbjct: 52 VVTTTAFVKVSVVLFLVRNALGTQTIPPNIVLYAAALILTMFVSAPIAEQTYDRITDPRL 111 Query: 116 NNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYR 170 Q + A + ++P ++ T E+ F+ +T +D + Sbjct: 112 RYQSLDDWAEAAKAGSQPLLEHLKKFTNEEQRRFFLSSTEKVWPEEMRARVTADD---FA 168 Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230 IL+PSF+ISEL+R+FEIGFL+ LPF++ID+IV TI+MAMGM M+ PT I++PFK+ FV Sbjct: 169 ILVPSFLISELKRAFEIGFLLYLPFIVIDLIVTTILMAMGMSMVSPTIIAVPFKLFLFVA 228 Query: 231 IDGWSLLVENLVKSF 245 IDGWS L+ LV S+ Sbjct: 229 IDGWSRLMHGLVLSY 243 >gi|193062099|ref|ZP_03043195.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli E22] gi|192932319|gb|EDV84917.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli E22] Length = 217 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 71/200 (35%), Positives = 123/200 (61%), Gaps = 10/200 (5%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-L 103 +F +LS+ PI +++ T F + IV IL+ +G+ VPPN+ + S++L +T ++MSP L Sbjct: 17 VFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIIL 76 Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 + + +P+ T++ Q+V E P+ F+ N ++++ F A N Sbjct: 77 QINDNISQEPI---NYTDSDFFQKVDEKILSPYRGFLEKNIEKENVEFFERAAQKKLGNE 133 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 I K D + IL+P+F + +L +F+IGFL+ LPF+ ID+I++ I++A+GMMM+ P +I Sbjct: 134 TILKKDSL--FILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTI 191 Query: 220 SLPFKVIFFVLIDGWSLLVE 239 S+PFK++ F+L+ GW L E Sbjct: 192 SIPFKILLFILVGGWQKLFE 211 >gi|19749328|gb|AAL98698.1| Y4yL [Sinorhizobium fredii] gi|52631921|gb|AAU85371.1| RhcR [Sinorhizobium fredii] Length = 222 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 71/195 (36%), Positives = 117/195 (60%), Gaps = 8/195 (4%) Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115 ++ T F + +V ++R +G ++PPN+V+ + AL +T +V +P +++ + P + Sbjct: 25 VVTTTAFVKVSVVLFLVRNALGTQTIPPNIVLYAAALILTMFVSAPIAEQTYDRITDPRL 84 Query: 116 NNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYR 170 Q + A + ++P ++ T E+ F+ +T +D + Sbjct: 85 RYQSLDDWAEAAKAGSQPLLEHLKKFTNEEQRRFFLSSTEKVWPEEMRARVTADD---FA 141 Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230 IL+PSF+ISEL+R+FEIGFL+ LPF++ID+IV TI+MAMGM M+ PT I++PFK+ FV Sbjct: 142 ILVPSFLISELKRAFEIGFLLYLPFIVIDLIVTTILMAMGMSMVSPTIIAVPFKLFLFVA 201 Query: 231 IDGWSLLVENLVKSF 245 IDGWS L+ LV S+ Sbjct: 202 IDGWSRLMHGLVLSY 216 >gi|194292014|ref|YP_002007921.1| type III secretion system protein [Cupriavidus taiwanensis LMG 19424] gi|193225918|emb|CAQ71865.1| SctR: non flagellar T3S system inner membrane conserved protein. FliP/mopC/spaP family [Cupriavidus taiwanensis LMG 19424] Length = 219 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 79/217 (36%), Positives = 135/217 (62%), Gaps = 22/217 (10%) Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98 I+ TFGI AP + +MVT + + +IVF +LR +G+ VPPN+V+ +A+ +T Y+ Sbjct: 14 IILTFGI------APFVALMVTSYTKLVIVFGLLRAALGLQQVPPNMVLNGIAIILTAYI 67 Query: 99 MSP-------TLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 M+P + R + +N+ +T A V+ P F+ +T E++ + F+ Sbjct: 68 MAPIGSDAFDAIKRRADANAAFNVNDVVTVYDA---VSGPLKEFLVKHTEERNRTFFVQS 124 Query: 152 AHS---SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208 A R D+ +D + +LIPSF +SEL R+F+IGF++ L F+++D+IVA I++A Sbjct: 125 AKRIWPEGRADDLKSDDMM---VLIPSFTLSELTRAFQIGFVVYLVFVVVDLIVAAILLA 181 Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +GM M+ PT+IS+PFK++ FV+++GW+ L++ LV S+ Sbjct: 182 LGMSMVAPTTISVPFKLLLFVMLEGWTQLIQGLVLSY 218 >gi|15833837|ref|NP_312610.1| type III secretion system protein [Escherichia coli O157:H7 str. Sakai] gi|13364058|dbj|BAB38006.1| type III secretion system EscR protein [Escherichia coli O157:H7 str. Sakai] Length = 217 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 72/200 (36%), Positives = 122/200 (61%), Gaps = 10/200 (5%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-L 103 +F +LS+ PI + + T F + IV IL+ +G+ VPPN+ + S++L +T ++MSP L Sbjct: 17 VFFLLSLLPIFVGIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIIL 76 Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 + + +P+ T++ Q+V E P+ F+ NT + ++ F A N Sbjct: 77 QINDNISQEPI---NYTDSDFFQKVDEKILSPYRGFLEKNTEKDNVEFFERAAQKKLGNE 133 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 I K D + IL+P+F + +L +F+IGFL+ LPF+ ID+I++ I++A+GMMM+ P +I Sbjct: 134 TILKKDSL--FILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTI 191 Query: 220 SLPFKVIFFVLIDGWSLLVE 239 S+PFK++ F+L+ GW L E Sbjct: 192 SIPFKILLFILVGGWQKLFE 211 >gi|294141001|ref|YP_003556979.1| type III secretion system EscR protein [Shewanella violacea DSS12] gi|293327470|dbj|BAJ02201.1| type III secretion system EscR protein [Shewanella violacea DSS12] Length = 216 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 72/201 (35%), Positives = 124/201 (61%), Gaps = 6/201 (2%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP-TLDRSI 107 LSI P+ +M T F + IV S+LR +G+ +PPN+ I L+L +T ++M+P ++ + Sbjct: 17 LSILPLFAVMGTSFLKLSIVLSMLRNALGIQQIPPNMAIYGLSLILTLFIMAPIGMEIND 76 Query: 108 EMGIQPLMNNQITETTAIQRVAE-PFWVFMRNNTREKDLSLFMDMAHSS--HRNTDITKN 164 + + P++ + + +A P+ F+ NT + L F ++ H + + D+ Sbjct: 77 NLKVHPIVFDSANIIEQVNTLAIIPYRDFLEKNTSKTQLDFFANIGHKTWPDKYQDVLSK 136 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D + +++P+F +S+L +F+IG LI LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK Sbjct: 137 DSL--FVMLPAFTMSQLIEAFKIGLLIYLPFVAIDLIVSNILLAMGMMMVSPMTISLPFK 194 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ F+L+ GW LV L+ SF Sbjct: 195 LLIFILMGGWEKLVSQLMVSF 215 >gi|2865276|gb|AAC38369.1| EscR [Escherichia coli] Length = 217 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 71/200 (35%), Positives = 122/200 (61%), Gaps = 10/200 (5%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-L 103 +F +LS+ PI +++ T F + IV IL+ +G+ VPPN+ + S++L +T ++MSP L Sbjct: 17 VFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIIL 76 Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 + + +P+ T++ Q+V E P+ + NT + ++ F A N Sbjct: 77 QINDNISQEPI---NYTDSDFFQKVDEKILSPYRGILEKNTEKDNVEFFERAAQKKLGNE 133 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 I K D + IL+P+F + +L +F+IGFL+ LPF+ ID+I++ I++A+GMMM+ P +I Sbjct: 134 TILKKDSL--FILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTI 191 Query: 220 SLPFKVIFFVLIDGWSLLVE 239 S+PFK++ F+L+ GW L E Sbjct: 192 SIPFKILLFILVGGWQKLFE 211 >gi|312884595|ref|ZP_07744299.1| type III secretion system protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309367907|gb|EFP95455.1| type III secretion system protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 216 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 124/208 (59%), Gaps = 20/208 (9%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT------ 102 LS+ P+ +M T F + IV S+LR +G+ +PPN+ I LAL +T + M+P Sbjct: 17 LSLLPLFAVMGTSFLKLSIVLSMLRNALGIQQIPPNMAIYGLALILTMFTMAPVGMAIRD 76 Query: 103 --LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHR 157 +E P + +QI+E +V P++ F+ +NT +K + F + H Sbjct: 77 NLAAHPVEWA-SPDVFHQISE-----QVIAPYYKFLSHNTSDKQIQFFSQIGHKIWPEQY 130 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 +++K + +++P+F +S+L +F+IGFL+ LPF+ ID++V+ I++AMGMMM+ P Sbjct: 131 QHELSKESLL---VMVPAFTMSQLIEAFKIGFLLYLPFVAIDLVVSNILLAMGMMMVSPM 187 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 +I+LPFK++ F+L+ GW L+ L+ SF Sbjct: 188 TIALPFKLLIFILMGGWDKLIGQLMGSF 215 >gi|284007639|emb|CBA73298.1| type III secretion inner membrane protein YscR,SpaR,HrcR,EscR [Arsenophonus nasoniae] Length = 209 Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 75/203 (36%), Positives = 123/203 (60%), Gaps = 10/203 (4%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108 LSI P+ +M T F + IV S+LR +G+ +PPN+ I LAL +T + M+P + +I Sbjct: 10 LSIMPLFAVMGTSFLKISIVLSMLRNALGIQQIPPNMAIYGLALILTLFTMAP-VGFAIR 68 Query: 109 MGI--QPLMNNQITETTAIQR-VAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDIT 162 I QP+ N + I V P+ F++ NT E+ + F + + T ++ Sbjct: 69 DNIKAQPIDWNSVNSMEQIDSSVITPYRDFLKKNTSEEQIKFFTQIGYKIWPKQYQTSLS 128 Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222 N + +++P+F +S+L +F+IGFLI LPF+ ID+IV+ +++AMGMMM+ P +I+LP Sbjct: 129 PNSLL---VMVPAFTMSQLIAAFKIGFLIYLPFVAIDLIVSNVLLAMGMMMVSPMTIALP 185 Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245 FK++ F+L+ GW L+ L+ SF Sbjct: 186 FKLLIFILMGGWDKLIGQLMVSF 208 >gi|13475305|ref|NP_106869.1| type III secretion system protein [Mesorhizobium loti MAFF303099] gi|14026056|dbj|BAB52655.1| translocation protein in type III secretion system; HrcR [Mesorhizobium loti MAFF303099] Length = 221 Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 69/187 (36%), Positives = 114/187 (60%), Gaps = 2/187 (1%) Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F + +V ++R +G ++PPN+ + ++AL +T ++ +P ++++ + P ++ Q Sbjct: 30 AFVKVSVVLFLVRNALGTQTIPPNIALYAVALILTMFLSAPVVEQTYDRMTDPKLHYQTF 89 Query: 121 E--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 + +A + +EP ++ T E+ F+ K + IL+PSF+I Sbjct: 90 DDWVSAAKSGSEPLRDHLKKFTNEEQRQFFLSSTEKVWPAEMRAKATVDDLSILVPSFLI 149 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+R+FEIGFL+ LPF++ID+IV TI+MAMGM M+ PT IS+PFK+ FV IDGWS L+ Sbjct: 150 SELKRAFEIGFLLYLPFIVIDLIVTTILMAMGMSMVSPTLISVPFKLFVFVAIDGWSKLM 209 Query: 239 ENLVKSF 245 LV S+ Sbjct: 210 HGLVLSY 216 >gi|34498062|ref|NP_902277.1| type III secretion system protein [Chromobacterium violaceum ATCC 12472] gi|34332839|gb|AAQ60277.2| type III secretion system EscR protein [Chromobacterium violaceum ATCC 12472] Length = 216 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 73/205 (35%), Positives = 124/205 (60%), Gaps = 14/205 (6%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP-TLDRSI 107 LSI P+L+++ T F + +VF++LR +G+ +PPN+ + LAL +T ++M+P L+ Sbjct: 17 LSILPLLVVLGTSFLKLAVVFALLRNALGIQQIPPNIALYGLALILTLFIMAPIGLEIQD 76 Query: 108 EMGIQPLMNNQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHS---SHRNTD 160 + P+ +I IQ+V P+ VF+ NT + + F D+ H Sbjct: 77 NLIAHPI---KIESPAFIQQVESGVFTPYRVFLERNTAPEQVHFFADIGHQIWPEKYQQR 133 Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220 I N + +L+P+F +S+L +F+IG L+ LPF+ ID++V+ +++AMGMMM+ P +IS Sbjct: 134 IPDNSLL---VLMPAFTVSQLIEAFKIGLLLFLPFVAIDLVVSNVLLAMGMMMVSPMTIS 190 Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245 +P K++ FVL++GW L+ LV SF Sbjct: 191 MPLKLLVFVLMNGWEKLLGQLVLSF 215 >gi|254511334|ref|ZP_05123401.1| flagellar biosynthetic protein FliP [Rhodobacteraceae bacterium KLH11] gi|221535045|gb|EEE38033.1| flagellar biosynthetic protein FliP [Rhodobacteraceae bacterium KLH11] Length = 146 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 64/148 (43%), Positives = 93/148 (62%), Gaps = 3/148 (2%) Query: 99 MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 M P + E GIQP++ + A++R PF FM D F MA Sbjct: 1 MEPVFSEAWEAGIQPMVEETLDVEPALERALVPFRSFMAARL---DADTFQAMAALRPDG 57 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 T + + +L+PSFM+SE+ R+F+IGFLI LPFLIID++VA ++M+MGMMM+PP + Sbjct: 58 TQMQLSPEAPLSVLMPSFMLSEIARAFQIGFLIFLPFLIIDLVVAAVLMSMGMMMVPPAT 117 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +SLPFK+ FFV+ DGW+L+ LV+S++ Sbjct: 118 VSLPFKLAFFVIADGWALIASALVRSYV 145 >gi|260775667|ref|ZP_05884563.1| YYop virulence translocation protein R [Vibrio coralliilyticus ATCC BAA-450] gi|260608083|gb|EEX34252.1| YYop virulence translocation protein R [Vibrio coralliilyticus ATCC BAA-450] Length = 216 Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 124/206 (60%), Gaps = 14/206 (6%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD---- 104 +S+ P++ I T F + +V I+R +G+ VPP++ + S+AL TF+VM+P Sbjct: 17 MSLIPLMFITTTAFLKIAMVLMIVRNALGVQQVPPSMAVYSIALAATFFVMAPVFSEIQN 76 Query: 105 --RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS--SHRNTD 160 + E G L +QI ET I R+ P FM +N + A R + Sbjct: 77 SVKGTESG--ALNEDQIVET--IDRIKTPLMGFMASNVDTQISERLKSTAREMWPARMSQ 132 Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220 N+ + IL+PSF+ISEL+ F+IGFLI +PF++ID+IV+ I++A+GM M+ P +++ Sbjct: 133 SMTNES--FFILLPSFVISELQAGFKIGFLIYIPFVVIDLIVSNILLALGMQMVAPITVT 190 Query: 221 LPFKVIFFVLIDGWSLLVENLVKSFI 246 +P K++ FVL+DGW+ L+E+L+ +++ Sbjct: 191 VPIKILLFVLVDGWAKLLESLIYTYL 216 >gi|326794362|ref|YP_004312182.1| Yop virulence translocation R [Marinomonas mediterranea MMB-1] gi|326545126|gb|ADZ90346.1| Yop virulence translocation R [Marinomonas mediterranea MMB-1] Length = 217 Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 75/212 (35%), Positives = 120/212 (56%), Gaps = 26/212 (12%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108 LS+ PI+LI+ + F + +V I R MG+ VPPN+ I +AL T +VM+P Sbjct: 18 LSLLPIMLIVCSAFLKISMVLMITRNAMGVQQVPPNMAIYGIALAATMFVMAPVFSD--- 74 Query: 109 MGIQPLMNNQITET-----------TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS--- 154 + N++ ET T+ ++ P FM N+ + MD Sbjct: 75 ------IGNKVKETPPDFSSLEGMQTSANKIVGPLQAFMSRNSNPDVTTHMMDNTARLWP 128 Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214 + +TK+D + I+IPSFM+SEL+ +IGFLI +PF++ID+IV+ +++A+GM M+ Sbjct: 129 KEMASKVTKDDLM---IVIPSFMLSELKAGLQIGFLIYIPFIVIDLIVSNLLLALGMQMV 185 Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 P +ISLP K++ FVL+DGW L++ L ++I Sbjct: 186 SPMTISLPLKILLFVLVDGWGRLLDGLFYTYI 217 >gi|296162490|ref|ZP_06845281.1| Yop virulence translocation R [Burkholderia sp. Ch1-1] gi|295887303|gb|EFG67130.1| Yop virulence translocation R [Burkholderia sp. Ch1-1] Length = 211 Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 72/207 (34%), Positives = 119/207 (57%), Gaps = 4/207 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++T +F +L + P+ + M T F +F IV ++LR+ +G+ P NLVI LAL T VM Sbjct: 8 LQTISLFFMLGLMPLAVAMTTSFTKFSIVLTLLRSALGVQQAPSNLVISGLALAATLVVM 67 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +PT+ + IE + T +Q V P FM ++R + + A Sbjct: 68 APTISK-IEAALDNGDGAMPRATELLQAVRGPLGDFMLKHSRADERQFLVGAAKRIDPER 126 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + D ++LIP+F+ISE+ FE GFL+ + FL++D++VA ++ AMGMMML P+++ Sbjct: 127 EARETD---MQLLIPAFLISEISSGFEAGFLLYIAFLVVDLVVANVLSAMGMMMLSPSTV 183 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246 S+P K+ FV + G S L+ L+ S++ Sbjct: 184 SIPLKLFIFVSVSGMSKLMHGLIVSYV 210 >gi|238023706|ref|YP_002907938.1| type III secretion system protein [Burkholderia glumae BGR1] gi|237878371|gb|ACR30703.1| Type III secretion-associated protein [Burkholderia glumae BGR1] Length = 216 Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 65/203 (32%), Positives = 125/203 (61%), Gaps = 10/203 (4%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP---TLDR 105 +S+ P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ YVM+P + Sbjct: 17 ISLLPFVAMVVTSYAKVVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYVMAPIGMQASK 76 Query: 106 SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH---SSHRNTDIT 162 S+E G Q A EPF F+ +T+E++ F+ A + ++ Sbjct: 77 SLE-GQQLASQPSQALIQAFGAAREPFRAFLEKHTQEREKRFFLRSAAVVWPKEQAQQLS 135 Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222 ++D I +L PSF +SEL +F+IGFL+ + F+++D+I+A +++A+G+ + PT++++P Sbjct: 136 EHDLI---VLAPSFTLSELTDAFKIGFLLYIAFIVVDLIIANVLLALGLNQVTPTNVAIP 192 Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245 FK++ FV++DGWS L+ LV ++ Sbjct: 193 FKLLLFVVMDGWSTLIHGLVMTY 215 >gi|312602787|ref|YP_004022632.1| type III secretion inner membrane protein SctR [Burkholderia rhizoxinica HKI 454] gi|306431590|emb|CBK52142.1| type III secretion inner membrane protein SctR [Burkholderia rhizoxinica HKI 454] gi|312170101|emb|CBW77113.1| type III secretion inner membrane protein SctR [Burkholderia rhizoxinica HKI 454] Length = 230 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 124/206 (60%), Gaps = 16/206 (7%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108 +S+ P++ +++T + + ++V S+LR +G VPPN+V+ +A+ ++ Y+M+P I Sbjct: 31 ISVVPLVAVVITSYTKIVVVLSLLRNALGAQQVPPNMVLNGIAILVSLYIMAP-----IG 85 Query: 109 MGIQPLMNNQITETTAIQRV-------AEPFWVFMRNNTREKDLSLFMDMAHS--SHRNT 159 M + NQ T Q V EPF F++ + +++ FM A Sbjct: 86 MAAAKQLENQPNAGTPSQSVVQAFSAAQEPFRAFLKQHANKREKRFFMRTATVIWPKEVA 145 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 D + D ++ +L P+F +SEL +F+IGFL+ + F++ID+I+A +++AMG+ + PT++ Sbjct: 146 DGLRED--DFIVLAPAFTLSELTDAFKIGFLLYITFVVIDLIIANVLLAMGLNQVMPTNV 203 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 ++PFK++ FV++DGWS L+ L+ ++ Sbjct: 204 AIPFKLLLFVVMDGWSTLIHGLILTY 229 >gi|82524597|ref|YP_406192.1| surface presentation of antigens protein SpaP [Shigella dysenteriae Sd197] gi|187734451|ref|YP_001883216.1| type III secretion apparatus protein, YscR/HrcR family [Shigella boydii CDC 3083-94] gi|32307046|gb|AAP79016.1| Spa24 [Shigella flexneri] gi|81243995|gb|ABB64704.1| Spa24 [Shigella dysenteriae Sd197] gi|187426947|gb|ACD06222.1| type III secretion apparatus protein, YscR/HrcR family [Shigella boydii CDC 3083-94] gi|320182865|gb|EFW57740.1| surface presentation of antigens protein SpaP [Shigella flexneri CDC 796-83] Length = 216 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 67/213 (31%), Positives = 127/213 (59%), Gaps = 12/213 (5%) Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98 ++ T FT+L P L+ TC+ +F IVF ++R +G+ VP N+ + +AL M +V Sbjct: 7 LIATLSFFTLL---PFLVAAGTCYIKFSIVFVMVRNALGLQQVPSNMTLNGIALIMALFV 63 Query: 99 MSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWV-FMRNNTREKDLSLFMDMAHSS 155 M P IE G + +N + + I R ++ + + + + DL L S Sbjct: 64 MKPI----IEAGYENYLNGPQKFDTISDIVRFSDSGLIEYKQYLKKHTDLELARFFQRSE 119 Query: 156 HRNTDITKNDHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 N D+ ++ +Y + L+P++ +SE++ +F+IGF + LPF+++D+++++I++A+GMMM Sbjct: 120 EENADLKSAENNDYSLFSLLPAYALSEIKDAFKIGFYLYLPFIVVDLVISSILLALGMMM 179 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 + P +IS+P K++ FV +DGW +L + L++ +I Sbjct: 180 MSPITISVPIKLVLFVALDGWGILSKALIEQYI 212 >gi|238757865|ref|ZP_04619047.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia aldovae ATCC 35236] gi|238703850|gb|EEP96385.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia aldovae ATCC 35236] Length = 215 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 68/192 (35%), Positives = 117/192 (60%), Gaps = 3/192 (1%) Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116 +M T F + +VFSILR +G+ VPPN+ + LAL ++ ++M+PT+ +++ P+ + Sbjct: 25 VMGTSFLKLAVVFSILRNALGIQQVPPNMALYGLALVLSMFIMAPTV-LAVKAQWHPVAD 83 Query: 117 NQ--ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174 + + P+ F++ N+ EK+ F ++ + + IL+P Sbjct: 84 ASTPVWMSGWDGHALGPYRQFLQKNSDEKEARYFRNLIAKTWPEDARRRVKPDSLLILLP 143 Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234 +F +S+L ++F IG LI LPFL ID++V+ I++AMGMMM+ P +ISLPFK++ F+L GW Sbjct: 144 AFTVSQLTQAFRIGLLIYLPFLAIDLLVSNILLAMGMMMVSPMTISLPFKLLIFLLAGGW 203 Query: 235 SLLVENLVKSFI 246 L++ LV+SF+ Sbjct: 204 DLILSQLVQSFV 215 >gi|307725660|ref|YP_003908873.1| Yop virulence translocation R [Burkholderia sp. CCGE1003] gi|307586185|gb|ADN59582.1| Yop virulence translocation R [Burkholderia sp. CCGE1003] Length = 216 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 63/202 (31%), Positives = 126/202 (62%), Gaps = 8/202 (3%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108 +S+ P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ YVM+P ++++ Sbjct: 17 ISLVPFVAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGVAILVSIYVMAPVGMQAMQ 76 Query: 109 MGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAH---SSHRNTDITK 163 + Q T+ EPF F++ +T E++ F+ A+ + + + Sbjct: 77 SMQGQAIAGQPTQALIQVFSAAREPFRTFLQKHTNEREKRFFIRSANVVWPKEAASSLHE 136 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 ND I +L P+F ++EL +F+IGFL+ + F++ID+I+A +++AMG+ + PT++++PF Sbjct: 137 NDLI---VLAPAFTLTELTDAFKIGFLLYIAFIVIDLIIANVLLAMGLNQVTPTNVAIPF 193 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K++ FV++DGWS L+ LV ++ Sbjct: 194 KLLLFVVMDGWSTLIHGLVMTY 215 >gi|167567944|ref|ZP_02360860.1| type III secretion system protein [Burkholderia oklahomensis EO147] gi|167573182|ref|ZP_02366056.1| type III secretion system protein [Burkholderia oklahomensis C6786] Length = 216 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 124/204 (60%), Gaps = 4/204 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP--- 101 I +S+ P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ + YVM+P Sbjct: 13 IVVAISLLPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILASLYVMAPVGM 72 Query: 102 TLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161 +S++ G Q + A+ EPF F+ +T+E++ F+ A + Sbjct: 73 QAAKSLD-GQQLASQSSQALIQALSAAREPFRAFLEKHTQEREKRFFIRSATVIWPKDEA 131 Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221 ++ + +L P+F +SEL +F+IGFL+ + F+I+D+++A +++A+G+ + PT++++ Sbjct: 132 SRLSEHDLVVLAPAFALSELTDAFKIGFLLYITFIIVDLVIANVLLALGLNQVTPTNVAI 191 Query: 222 PFKVIFFVLIDGWSLLVENLVKSF 245 PFK++ FV++DGWS L+ LV ++ Sbjct: 192 PFKLLLFVVMDGWSALIHGLVMTY 215 >gi|330819399|ref|YP_004348261.1| Type III secretion inner membrane protein SctR [Burkholderia gladioli BSR3] gi|327371394|gb|AEA62749.1| Type III secretion inner membrane protein SctR [Burkholderia gladioli BSR3] Length = 216 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 65/203 (32%), Positives = 124/203 (61%), Gaps = 10/203 (4%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP---TLDR 105 +S+ P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ YVM+P + Sbjct: 17 ISLLPFVAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSIYVMAPIGMQASK 76 Query: 106 SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH---SSHRNTDIT 162 ++E G Q A EPF F+ +T E++ F+ A + ++ Sbjct: 77 ALE-GQQLASQPSQALIQAFGAAKEPFRAFLVKHTAEREKRFFLRSAAVVWPKEQAQQLS 135 Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222 +ND I +L PSF +SEL +F+IGFL+ + F+++D+I+A +++A+G+ + PT++++P Sbjct: 136 ENDLI---VLAPSFTLSELTDAFKIGFLLYIAFIVVDLIIANVLLALGLNQVTPTNVAIP 192 Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245 FK++ FV++DGWS L+ LV ++ Sbjct: 193 FKLLLFVVMDGWSTLIHGLVMTY 215 >gi|254469150|ref|ZP_05082555.1| type III secretion apparatus protein, YscR/HrcR family [Pseudovibrio sp. JE062] gi|211960985|gb|EEA96180.1| type III secretion apparatus protein, YscR/HrcR family [Pseudovibrio sp. JE062] Length = 214 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 123/204 (60%), Gaps = 8/204 (3%) Query: 48 ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS- 106 ++++ P L I+ T F + +V ++R +G+ +PPN+ + +LA+ ++ Y+M P ++ Sbjct: 14 VVALVPFLAIVATSFIKLSVVLLLVRNALGVQQIPPNMALNALAIILSGYIMLPVFLQTF 73 Query: 107 --IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS--SHRNTDIT 162 +E G + + +TT + P F+ + K+ + F++ + D Sbjct: 74 EILEKGNYSIATVEDMKTTFVAAKG-PLEKFLAKHADSKEKAFFLEASRQLWPAEVADSM 132 Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222 D I IL+P++ +S+LR +FEIGFL+ LPFL ID++V+ I++AMGMMM+ P +ISLP Sbjct: 133 SADSIA--ILLPAYTVSQLREAFEIGFLLYLPFLAIDLVVSNILLAMGMMMVSPLTISLP 190 Query: 223 FKVIFFVLIDGWSLLVENLVKSFI 246 FK+ FV +DGWS L+ L+K+++ Sbjct: 191 FKLFLFVAVDGWSRLILGLIKTYV 214 >gi|167467561|ref|ZP_02332265.1| type III secretion system protein [Yersinia pestis FV-1] Length = 333 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 75/191 (39%), Positives = 119/191 (62%), Gaps = 7/191 (3%) Query: 48 ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRS 106 +LS+ P+L++M T F + +VFS+LR +G+ VPPN+ I LAL +T ++M+P LD Sbjct: 36 MLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQ 95 Query: 107 IEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSS--HRNTDITK 163 + + L N+ I Q P+ F++ NT + ++ F D+ + R D K Sbjct: 96 ARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVK 155 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 D + IL+P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P ++SLPF Sbjct: 156 PDSL--LILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPF 213 Query: 224 KVIFFVLIDGW 234 K++ FVL GW Sbjct: 214 KLLVFVL-SGW 223 >gi|167572947|ref|ZP_02365821.1| type III secretion system protein [Burkholderia oklahomensis C6786] Length = 216 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 73/203 (35%), Positives = 123/203 (60%), Gaps = 10/203 (4%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRSI 107 LSI P+L+++ T F + +VF++LR +G +PPN+ + LAL +T +VM+P L Sbjct: 17 LSILPLLVVLGTSFLKLSVVFALLRNALGTQQIPPNIALHGLALVLTMFVMAPVGLAIQD 76 Query: 108 EMGIQPLMNNQITETTAIQR-VAEPFWVFMRNNTREKDLSLFMDMAHSS----HRNTDIT 162 + P+ + T +++ + P+ F+ NT + F D+ H + +RN I Sbjct: 77 NLAAHPVRIDDKDFTQQVEKTILAPYRAFLERNTAPDQVRFFADVGHRTWPEPYRNR-IP 135 Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222 + I +L+P+F +S+L +F+IG L+ LPF+ ID+IV+ +++AMGMMM+ P +I+LP Sbjct: 136 DDSLI---VLLPAFTVSQLIEAFKIGLLLFLPFIAIDLIVSNVLLAMGMMMVSPMTIALP 192 Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245 K++ FVLI GW L+ L+ SF Sbjct: 193 LKLLVFVLIHGWEKLIGQLLLSF 215 >gi|284006888|emb|CBA72157.1| type III secretion component protein SctR [Arsenophonus nasoniae] Length = 192 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 74/197 (37%), Positives = 115/197 (58%), Gaps = 16/197 (8%) Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 M T F + +VFS+LR +G+ +PPN+ I L++ +T YVM+P + + + +N Sbjct: 1 MATSFVKMAMVFSLLRNALGVQQIPPNMAIYGLSIILTLYVMAP-----VALATKDFLNE 55 Query: 118 QITETTA-------IQRVAEPFWVFMRN--NTREKDLSLFMDMAHSSHRNTDITKNDHIE 168 +A + +P+ F+ N REK+ + + + +D + Sbjct: 56 NPISLSANASLEYFFEEGTKPYKSFLTKHINPREKEFFNENIAKYWPAKYANSVSSDSL- 114 Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 IL+P+F ISEL R+FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK++ F Sbjct: 115 -FILLPAFTISELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISLPFKLLLF 173 Query: 229 VLIDGWSLLVENLVKSF 245 V+ DGWS L LV S+ Sbjct: 174 VMFDGWSRLSHGLVLSY 190 >gi|167568050|ref|ZP_02360966.1| type III secretion system protein [Burkholderia oklahomensis EO147] Length = 216 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 73/203 (35%), Positives = 123/203 (60%), Gaps = 10/203 (4%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRSI 107 LSI P+L+++ T F + +VF++LR +G +PPN+ + LAL +T +VM+P L Sbjct: 17 LSILPLLVVLGTSFLKLSVVFALLRNALGTQQIPPNIALHGLALVLTMFVMAPVGLAIQD 76 Query: 108 EMGIQPLMNNQITETTAIQR-VAEPFWVFMRNNTREKDLSLFMDMAHSS----HRNTDIT 162 + P+ + T +++ + P+ F+ NT + F D+ H + +RN I Sbjct: 77 NLAAHPVGIDDKDFTQQVEKTILAPYRAFLERNTAPDQVRFFADVGHRTWPEPYRNR-IP 135 Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222 + I +L+P+F +S+L +F+IG L+ LPF+ ID+IV+ +++AMGMMM+ P +I+LP Sbjct: 136 DDSLI---VLLPAFTVSQLIEAFKIGLLLFLPFIAIDLIVSNVLLAMGMMMVSPMTIALP 192 Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245 K++ FVLI GW L+ L+ SF Sbjct: 193 LKLLVFVLIHGWEKLIGQLLLSF 215 >gi|74314952|ref|YP_313370.1| surface presentation of antigens protein SpaP [Shigella sonnei Ss046] gi|73858429|gb|AAZ91135.1| Spa24 [Shigella sonnei Ss046] Length = 216 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 68/216 (31%), Positives = 129/216 (59%), Gaps = 18/216 (8%) Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98 ++ T FT+L P L+ TC+ +F IVF ++R +G+ VP N+ + +AL M +V Sbjct: 7 LIATLSFFTLL---PFLVAAGTCYIKFSIVFVMVRNALGLQQVPSNMTLNGIALIMALFV 63 Query: 99 MSPTLDRSIEMGIQPLMN--NQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMA 152 M P IE G + +N + + I R ++ + +++ +T DL L Sbjct: 64 MKPI----IEAGYENYLNGPQKFDTISDIVRFSDSGLMEYKQYLKKHT---DLELARFFQ 116 Query: 153 HSSHRNTDITKNDHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 S N D+ ++ +Y + L+P++ +SE++ +F+IGF + LPF+++D+++++I++A+G Sbjct: 117 RSEEENADLKSAENNDYSLFSLLPAYALSEIKDAFKIGFYLYLPFVVVDLVISSILLALG 176 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 MMM+ P +IS+P K++ FV +DGW +L + L++ +I Sbjct: 177 MMMMSPITISVPIKLVLFVALDGWGILSKALIEQYI 212 >gi|323530325|ref|YP_004232477.1| Yop virulence translocation R [Burkholderia sp. CCGE1001] gi|323387327|gb|ADX59417.1| Yop virulence translocation R [Burkholderia sp. CCGE1001] Length = 216 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 63/202 (31%), Positives = 125/202 (61%), Gaps = 8/202 (3%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108 +S+ P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ YVM+P ++++ Sbjct: 17 ISLVPFVAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGVAILVSLYVMAPVGMQAMQ 76 Query: 109 MGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAH---SSHRNTDITK 163 + Q T+ EPF F++ +T E++ F+ A+ + + Sbjct: 77 SMQGQAIAGQPTQALIQVFSAAREPFRTFLQKHTNEREKRFFIRSANVVWPKDAAASLHE 136 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 ND I +L P+F ++EL +F+IGFL+ + F++ID+I+A +++AMG+ + PT++++PF Sbjct: 137 NDLI---VLAPAFTLTELTDAFKIGFLLYIAFIVIDLIIANVLLAMGLNQVTPTNVAIPF 193 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K++ FV++DGWS L+ LV ++ Sbjct: 194 KLLLFVVMDGWSTLIHGLVMTY 215 >gi|13449100|ref|NP_085316.1| Type III secretion protein [Shigella flexneri 5a] gi|31983543|ref|NP_858286.1| surface presentation of antigens protein SpaP [Shigella flexneri 2a str. 301] gi|60415913|sp|P0A1L3|SPAP_SHIFL RecName: Full=Surface presentation of antigens protein spaP; AltName: Full=Spa24 protein gi|60415914|sp|P0A1L4|SPAP_SHISO RecName: Full=Surface presentation of antigens protein spaP; AltName: Full=Spa24 protein gi|13310648|gb|AAK18472.1|AF348706_161 Type III secretion protein [Shigella flexneri 5a] gi|152795|gb|AAA26544.1| spa24 [Shigella flexneri] gi|303893|dbj|BAA02829.1| spa24 [Shigella flexneri] gi|829080|dbj|BAA09162.1| ORF22 [Shigella sonnei] gi|12329097|emb|CAC05828.1| Spa24, component of the Mxi-Spa secretion machinery [Shigella flexneri] gi|18462535|gb|AAL72307.1| Spa24, component of the Mxi-Spa secretion machinery [Shigella flexneri 2a str. 301] gi|281603908|gb|ADA76891.1| surface presentation of antigens protein SpaP [Shigella flexneri 2002017] Length = 216 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 68/216 (31%), Positives = 129/216 (59%), Gaps = 18/216 (8%) Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98 ++ T FT+L P L+ TC+ +F IVF ++R +G+ VP N+ + +AL M +V Sbjct: 7 LIATLSFFTLL---PFLVAAGTCYIKFSIVFVMVRNALGLQQVPSNMTLNGIALIMALFV 63 Query: 99 MSPTLDRSIEMGIQPLMN--NQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMA 152 M P IE G + +N + + I R ++ + +++ +T DL L Sbjct: 64 MKPI----IEAGYENYLNGPQKFDTISDIVRFSDSGLMEYKQYLKKHT---DLELARFFQ 116 Query: 153 HSSHRNTDITKNDHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 S N D+ ++ +Y + L+P++ +SE++ +F+IGF + LPF+++D+++++I++A+G Sbjct: 117 RSEEENADLKSAENNDYSLFSLLPAYALSEIKDAFKIGFYLYLPFVVVDLVISSILLALG 176 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 MMM+ P +IS+P K++ FV +DGW +L + L++ +I Sbjct: 177 MMMMSPITISVPIKLVLFVALDGWGILSKALIEQYI 212 >gi|5679188|gb|AAD46902.1|AF160974_5 HrcR homolog [Xanthomonas campestris pv. glycines] Length = 201 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 66/203 (32%), Positives = 118/203 (58%), Gaps = 8/203 (3%) Query: 48 ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107 +L + P ++VT + + ++V +LR +G+ VPPN+V+ +AL ++ +VM+P + Sbjct: 1 MLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF 60 Query: 108 EMGIQPLMNNQITETTAI--QRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDIT 162 + Q + EPF F+ +TRE++ + FM A + + Sbjct: 61 KAAAQNYGAGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLK 120 Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222 +D + +L P+F +SEL +F IGFL+ L F++ID++VA +MAMG+ + PT++++P Sbjct: 121 SDDLL---VLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIP 177 Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245 FK++ FV +DGWS+L+ LV S+ Sbjct: 178 FKLLLFVAMDGWSMLIHGLVLSY 200 >gi|213162230|ref|ZP_03347940.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 190 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 70/194 (36%), Positives = 114/194 (58%), Gaps = 11/194 (5%) Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL----DR--SIEMGI 111 M T F + +VFSILR +G+ VPPN+ + AL ++ ++M PTL +R +++ Sbjct: 1 MGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAG 60 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 P ++ + P+ F++ N+ EK+ + F ++ + K I Sbjct: 61 APFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLI 115 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 LIP+F +S+L ++F IG LI LPFL ID++++ I++AMGMMM+ P +ISLPFK++ F+L Sbjct: 116 LIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLA 175 Query: 232 DGWSLLVENLVKSF 245 GW L + LV+SF Sbjct: 176 GGWDLTLAQLVQSF 189 >gi|224825752|ref|ZP_03698856.1| flagellar biosynthetic protein FliP [Lutiella nitroferrum 2002] gi|224601976|gb|EEG08155.1| flagellar biosynthetic protein FliP [Lutiella nitroferrum 2002] Length = 252 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 80/215 (37%), Positives = 127/215 (59%), Gaps = 7/215 (3%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P D ++ T I+ I T+L + P+L++M+T F RF+IV S+LR +G+ PN ++ Sbjct: 41 PVDFTVKTQILI---IMTLLGLLPVLMLMMTSFTRFVIVLSLLRQALGLQQGLPNRLVTG 97 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 +AL +T VM P + P ++IT A+ +P FM T + L+ Sbjct: 98 VALILTLLVMRPVGLEVWNKAMLPFDQDKITMQQALDVAQQPISRFMLAQTSKAALA--- 154 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 +A S DH + + + +F++SEL+ +F+IG ++ +PFL+ID++V++++MAM Sbjct: 155 QVAKLSGEENVARPQDH-AFAVKLAAFVLSELKTAFQIGCMLFIPFLVIDLVVSSVLMAM 213 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 GMMML P ISLP K++ FVL+DGWSL V LV S Sbjct: 214 GMMMLSPLVISLPLKLLMFVLVDGWSLTVNTLVTS 248 >gi|332526333|ref|ZP_08402460.1| type III secretion system protein YscR [Rubrivivax benzoatilyticus JA2] gi|332110470|gb|EGJ10793.1| type III secretion system protein YscR [Rubrivivax benzoatilyticus JA2] Length = 220 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 75/207 (36%), Positives = 119/207 (57%), Gaps = 12/207 (5%) Query: 48 ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT----L 103 +L++AP + +MVT F + ++V S+LR +G+ VPPN+V+ +AL ++ YVM P Sbjct: 17 LLALAPFVGVMVTSFTKIVVVLSLLRNALGLQQVPPNVVLNGMALVLSIYVMYPVGLQMA 76 Query: 104 DRSIEMGIQPLMNNQITETTAIQRV--AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161 +R + Q + TE EP F+ ++ + F++ + RN Sbjct: 77 ERVGQSQSQSQAAGRGTEALLAAADAAKEPLREFLIQHSNPDERRFFLE---TLRRNLSP 133 Query: 162 TKNDHIEYRILIPSFMI---SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 + + R L+ +EL +F+IGFLI LPFL+ID++V+ I+MA+GMMML PT+ Sbjct: 134 AQQQALSERDLVVVVPAFVVNELSVAFQIGFLIFLPFLVIDLVVSNILMALGMMMLSPTT 193 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 +SLPFK++ FVL+DGW L LV S+ Sbjct: 194 VSLPFKLLLFVLVDGWVKLSHGLVLSY 220 >gi|238918894|ref|YP_002932408.1| type III secretion system protein [Edwardsiella ictaluri 93-146] gi|238868462|gb|ACR68173.1| type III secretion apparatus protein, YscR/HrcR family, putative [Edwardsiella ictaluri 93-146] Length = 215 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 67/196 (34%), Positives = 119/196 (60%), Gaps = 11/196 (5%) Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115 ++M T F + +VF++LR +G+ +PPNL + LAL +T ++M+P + +Q + Sbjct: 24 IVMGTSFLKLSVVFALLRNALGIQQIPPNLALYGLALILTLFIMTP-----VGTAVQARL 78 Query: 116 NNQ--ITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169 + +TT + R+++ P+ F+R +T K L F +A S + K Sbjct: 79 ADAPAQAQTTLLSRLSDNTLDPYRQFLRQHTSAKQLKFFRQVATKSWPASVREKISDNSL 138 Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229 +L+P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +IS+PFK++ F+ Sbjct: 139 LLLMPAFAVSQLVEAFQIGLLLFLPFIAIDLIVSNILLAMGMMMVSPMTISMPFKLLVFI 198 Query: 230 LIDGWSLLVENLVKSF 245 L+ GW ++ L+ S+ Sbjct: 199 LVGGWDKILGQLLLSY 214 >gi|160875390|ref|YP_001554706.1| type III secretion system protein [Shewanella baltica OS195] gi|160860912|gb|ABX49446.1| Yop virulence translocation R [Shewanella baltica OS195] gi|315267590|gb|ADT94443.1| Yop virulence translocation R [Shewanella baltica OS678] Length = 216 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 70/202 (34%), Positives = 121/202 (59%), Gaps = 8/202 (3%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRSI 107 LS+ P+ +M T F + IVFS+LR +G+ +PPN+ I LAL +T + M+P + + Sbjct: 17 LSLLPLFAVMGTSFLKLAIVFSMLRNALGIQQIPPNMAIYGLALILTLFTMAPVGMAIND 76 Query: 108 EMGIQPLMNN--QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS--SHRNTDITK 163 + P++ + + E + +A P+ F+ NT + F ++ H + + Sbjct: 77 NLKATPIVFDAPNVFEQINTEAIA-PYRAFLEKNTSNTQIEFFANIGHKVWPEKYQQVLT 135 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 D + +++P+F +S+L +F+IG LI LPF+ ID+IV+ I++AMGMMM+ P +I+LPF Sbjct: 136 KDSL--LVMVPAFTMSQLIEAFKIGLLIYLPFVAIDLIVSNILLAMGMMMVSPMTIALPF 193 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K++ F+L+ GW L+ L+ SF Sbjct: 194 KLLIFILMGGWEKLISQLMMSF 215 >gi|1346805|sp|P37828|PRO2_XANCG RecName: Full=Pathogenicity-related ORF2 gi|901847|gb|AAA69968.1| pathogenicity protein [Xanthomonas campestris] Length = 216 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 66/203 (32%), Positives = 118/203 (58%), Gaps = 8/203 (3%) Query: 48 ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107 +L + P ++VT + + ++V +LR +G+ VPPN+V+ +AL ++ +VM+P + Sbjct: 16 MLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF 75 Query: 108 EMGIQPLMNNQITETTAI--QRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDIT 162 + Q + EPF F+ +TRE++ + FM A + + Sbjct: 76 KAAAQNYGAGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLK 135 Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222 +D + +L P+F +SEL +F IGFL+ L F++ID++VA +MAMG+ + PT++++P Sbjct: 136 SDDLL---VLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIP 192 Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245 FK++ FV +DGWS+L+ LV S+ Sbjct: 193 FKLLLFVAMDGWSMLIHGLVLSY 215 >gi|330812430|ref|YP_004356892.1| type III secretion protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|312597801|gb|ADQ89916.1| RscR [Pseudomonas fluorescens] gi|327380538|gb|AEA71888.1| putative type III secretion protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 217 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 70/204 (34%), Positives = 126/204 (61%), Gaps = 10/204 (4%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108 +S+ P+LLI+ + F + IV +I R +G+ VPPN+ + ++AL T ++M+P E Sbjct: 18 ISLVPLLLIICSAFLKIAIVLTITRNAIGVQQVPPNMALYAIALAATLFIMAPVGHNIAE 77 Query: 109 -MGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDIT 162 + +PL N + + +A+ + +P FM NT L+ ++ R + Sbjct: 78 QVKERPLDFSNTEALQGSALNAI-KPLQAFMSRNTNPDILAHLLENTQRMWPKERAEQAS 136 Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222 ++D + +LIP+FM+SEL F++GFLI +PF++ID+IV+ +++A+GM M+ P +ISLP Sbjct: 137 RDDLM---LLIPAFMLSELEAGFQMGFLIYIPFIVIDLIVSNLLLALGMQMVAPMTISLP 193 Query: 223 FKVIFFVLIDGWSLLVENLVKSFI 246 K++ FVL+ GW+ L+++L S++ Sbjct: 194 LKLLIFVLVQGWTQLLDSLFYSYL 217 >gi|222082189|ref|YP_002541554.1| type III secretion system protein [Agrobacterium radiobacter K84] gi|221726868|gb|ACM29957.1| type III secretion apparatus protein, YscR/HrcR family [Agrobacterium radiobacter K84] Length = 218 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 69/199 (34%), Positives = 121/199 (60%), Gaps = 2/199 (1%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108 +SI P++ ++ T F + +V I+R +G+ PPNL++ ++A+ ++ +VM+P L + + Sbjct: 18 ISILPVIAVVATSFTKIAVVLLIVRNAIGIQQTPPNLLVFAIAIVLSAFVMNPILQQCWQ 77 Query: 109 MGIQPLMN-NQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 + ++ ++ + I A + V P FM + E+ F++ + +T Sbjct: 78 VLLRADVHFDTINGLAAGLSEVGAPLKAFMMKFSDEEVRQFFVNSSQRIWGDTATLPASP 137 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 + +L PSF++SEL R+FEIGFL+ LPFL+ID V+ I++A+GM M+ PT +S PFK++ Sbjct: 138 DDITVLTPSFLVSELTRAFEIGFLLYLPFLMIDFAVSAILVALGMQMMSPTVVSTPFKLL 197 Query: 227 FFVLIDGWSLLVENLVKSF 245 FV +DGW L+E LV S+ Sbjct: 198 LFVGVDGWRRLLEGLVLSY 216 >gi|82470758|gb|ABB77410.1| HrcR [Pantoea stewartii subsp. stewartii] Length = 217 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/214 (35%), Positives = 132/214 (61%), Gaps = 15/214 (7%) Query: 42 TFGIF-TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100 TF +F LS+ PIL+I+ TCF + +V I R +G+ VPPN+ + +AL T +VM+ Sbjct: 10 TFALFLGALSLIPILMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMA 69 Query: 101 PTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR- 157 P ++ + Q + N T+I P FM +NT D + + + +S R Sbjct: 70 PVFNQMQQQFSQAPADFSNVDNLRTSITNGVTPLQKFMAHNT---DPDILIHLQENSVRM 126 Query: 158 -----NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 + +I+K++ + ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM Sbjct: 127 WPKSMSENISKDNLL---LVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQ 183 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 M+ P ++SLP K++ FVLI+GW+ L++ L S++ Sbjct: 184 MVAPMTLSLPLKMLLFVLINGWTRLLDGLFYSYL 217 >gi|76152316|gb|ABA39817.1| HrcR [Erwinia pyrifoliae] Length = 217 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 73/211 (34%), Positives = 129/211 (61%), Gaps = 9/211 (4%) Query: 42 TFGIF-TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100 TF +F LS+ P+L+I+ TCF + +V I R +G+ VPPN+ + +AL T +VM+ Sbjct: 10 TFALFLGALSLIPMLMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMA 69 Query: 101 PTLDRSIEMGIQ--PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 P ++ + Q +++ T++ P FM +NT D + + + +S R Sbjct: 70 PVFNQMQQQFSQVPADLSSMDNLKTSVSNGVAPLQKFMTHNT---DPDILIHLQENSVRM 126 Query: 159 TDITKNDHIEYR---ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215 +D + R ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ Sbjct: 127 WPKEMSDSVSKRHVLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVA 186 Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 P ++SLP K++ FVLI+GW+ L++ L S++ Sbjct: 187 PMTLSLPLKMLLFVLINGWTRLLDGLFYSYL 217 >gi|323143897|ref|ZP_08078559.1| type III secretion apparatus protein, YscR/HrcR family [Succinatimonas hippei YIT 12066] gi|322416324|gb|EFY06996.1| type III secretion apparatus protein, YscR/HrcR family [Succinatimonas hippei YIT 12066] Length = 222 Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 127/206 (61%), Gaps = 10/206 (4%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 ++ + P L + T + + I+V ++R +G+ VPP +V+ LA+ ++ +VM+P ++ Sbjct: 18 ALMGLVPFFLTLATSYIKIIVVIYLIRNALGIQQVPPGMVLSGLAMILSIFVMAPVGVKT 77 Query: 107 IEMGIQPLMNNQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHS---SHRNT 159 ++ Q ++ T + +A+ P F+++NT E+ L+ F + A + Sbjct: 78 YDLLQQQDVSTVETSPYNVLEIADNVSGPLKDFLQHNTDERILNAFTNTAQRIWPQEIHN 137 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 I+K+ I +IPSF+ISEL ++F+IGFL+ LPF+ ID+I++ I++AMGMMM+ P +I Sbjct: 138 VISKDSLI---FIIPSFVISELTKAFQIGFLLYLPFIAIDLIISNILLAMGMMMVSPMTI 194 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FV +DGW L + L+ S+ Sbjct: 195 SLPFKLMLFVTLDGWLKLSQGLLYSY 220 >gi|91782703|ref|YP_557909.1| type III secretion system protein [Burkholderia xenovorans LB400] gi|91686657|gb|ABE29857.1| Putative type III secretion protein, YscR-like protein [Burkholderia xenovorans LB400] Length = 211 Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 72/207 (34%), Positives = 119/207 (57%), Gaps = 6/207 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ +F +L + P+ + M T F +F IV ++LR+ +G+ P NLVI +AL T VM Sbjct: 8 LQNISLFFMLGLLPLAVAMTTSFTKFSIVLTLLRSALGVQQAPSNLVISGMALAATLVVM 67 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +PTL + IE + T +Q V P FM ++R ++ + S+ + Sbjct: 68 APTLSK-IEAALDTGDGAMPRPTELVQAVRGPLGEFMLKHSRLEERQFLV----SAAKRI 122 Query: 160 DITKNDH-IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 D H + ++LIP+F+ISE+ FE GFL+ + FL++D++VA ++ AMGMMML P++ Sbjct: 123 DPEHEAHDTDLQLLIPAFLISEISSGFEAGFLLYIAFLVVDLVVANVLSAMGMMMLSPST 182 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 +S+P K+ FV G S L+ L+ S+ Sbjct: 183 VSIPLKLFIFVSASGMSKLMHGLIVSY 209 >gi|260778660|ref|ZP_05887552.1| yop virulence translocation protein R [Vibrio coralliilyticus ATCC BAA-450] gi|260604824|gb|EEX31119.1| yop virulence translocation protein R [Vibrio coralliilyticus ATCC BAA-450] Length = 216 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 69/212 (32%), Positives = 128/212 (60%), Gaps = 10/212 (4%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + +S+ P+ +M T F + IV S+LR +G+ +PPN+ I LAL +T + M Sbjct: 8 IQLIAVLFFMSLLPLFAVMGTSFLKLSIVLSMLRNALGIQQIPPNMAIYGLALILTMFTM 67 Query: 100 SPT-LDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS-- 154 +P L + P+ + ++ + Q +A P+ F+ +NT + + F ++ H Sbjct: 68 APVGLAIRDNLAAHPVDWASPEVFSQISDQIIA-PYHQFLSHNTSDTQIQFFSEIGHKIW 126 Query: 155 -SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 ++++K+ + +++P+F +S+L +F+IGFL+ LPF+ ID+IV+ I++AMGMMM Sbjct: 127 PEQYQSELSKDSLL---VMVPAFTMSQLIEAFKIGFLLYLPFVAIDLIVSNILLAMGMMM 183 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 + P +I+LPFK++ F+L+ GW L+ L+ SF Sbjct: 184 VSPMTIALPFKLLIFILMGGWDKLIGQLMGSF 215 >gi|126174198|ref|YP_001050347.1| type III secretion system protein [Shewanella baltica OS155] gi|304408581|ref|ZP_07390202.1| Yop virulence translocation R [Shewanella baltica OS183] gi|307305409|ref|ZP_07585157.1| Yop virulence translocation R [Shewanella baltica BA175] gi|125997403|gb|ABN61478.1| Yop virulence translocation R [Shewanella baltica OS155] gi|304352402|gb|EFM16799.1| Yop virulence translocation R [Shewanella baltica OS183] gi|306911712|gb|EFN42137.1| Yop virulence translocation R [Shewanella baltica BA175] Length = 216 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 70/202 (34%), Positives = 121/202 (59%), Gaps = 8/202 (3%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRSI 107 LS+ P+ +M T F + IVFS+LR +G+ +PPN+ I LAL +T + M+P + + Sbjct: 17 LSLLPLFAVMGTSFLKLAIVFSMLRNALGIQQIPPNMAIYGLALILTLFTMAPVGMAIND 76 Query: 108 EMGIQPLMNN--QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS--SHRNTDITK 163 + P++ + + E + +A P+ F+ NT + F ++ H + + Sbjct: 77 NLKATPIVFDAPNVFEQINTEAIA-PYRAFLDKNTSNTQIEFFANIGHKVWPEKYQQVLT 135 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 D + +++P+F +S+L +F+IG LI LPF+ ID+IV+ I++AMGMMM+ P +I+LPF Sbjct: 136 KDSL--LVMVPAFTMSQLIEAFKIGLLIYLPFVAIDLIVSNILLAMGMMMVSPMTIALPF 193 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K++ F+L+ GW L+ L+ SF Sbjct: 194 KLLIFILMGGWEKLISQLMMSF 215 >gi|48256988|gb|AAT41683.1| type three secretion apparatus protein R [Edwardsiella ictaluri] gi|84663102|gb|ABC60084.1| EsaR [Edwardsiella ictaluri 93-146] Length = 250 Score = 128 bits (322), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 67/196 (34%), Positives = 119/196 (60%), Gaps = 11/196 (5%) Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115 ++M T F + +VF++LR +G+ +PPNL + LAL +T ++M+P + +Q + Sbjct: 59 IVMGTSFLKLSVVFALLRNALGIQQIPPNLALYGLALILTLFIMTP-----VGTAVQARL 113 Query: 116 NNQ--ITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169 + +TT + R+++ P+ F+R +T K L F +A S + K Sbjct: 114 ADAPAQAQTTLLSRLSDNTLDPYRQFLRQHTSAKQLKFFRQVATKSWPASVREKISDNSL 173 Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229 +L+P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +IS+PFK++ F+ Sbjct: 174 LLLMPAFAVSQLVEAFQIGLLLFLPFIAIDLIVSNILLAMGMMMVSPMTISMPFKLLVFI 233 Query: 230 LIDGWSLLVENLVKSF 245 L+ GW ++ L+ S+ Sbjct: 234 LVGGWDKILGQLLLSY 249 >gi|110632472|ref|YP_672680.1| type III secretion system protein [Mesorhizobium sp. BNC1] gi|110283456|gb|ABG61515.1| Yop virulence translocation R [Chelativorans sp. BNC1] Length = 220 Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 74/201 (36%), Positives = 118/201 (58%), Gaps = 6/201 (2%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108 LS P +++M T F + IV +LR +G+ P LVI S+AL +T +VM P + I Sbjct: 20 LSFIPFIVVMGTAFTKISIVLMLLRNAIGVQQAPSGLVINSIALTLTVFVMVPVGNAIIT 79 Query: 109 MGIQPLMN----NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 Q + +++ ++ V+E F +++ + ++L FMD A T + Sbjct: 80 QVQQQQLGFTGWENVSQLYSV--VSEAFTGYLKQFSSPRELQFFMDAARKMWPETLHGQI 137 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 IL+P+ + SEL R+F+I FLI LPF+++DM+V+ I++AMG MM+PP +SLP K Sbjct: 138 TTDNVFILLPAHVTSELTRAFQIAFLIFLPFVVVDMVVSNILLAMGAMMVPPMLVSLPIK 197 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FV DGW+LL+ NLV S+ Sbjct: 198 ILLFVAADGWALLLHNLVLSY 218 >gi|289663757|ref|ZP_06485338.1| type III secretion system protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289668179|ref|ZP_06489254.1| type III secretion system protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 214 Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 69/199 (34%), Positives = 116/199 (58%), Gaps = 11/199 (5%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP----TLDRSIE 108 P ++VT + + +V +LR +G+ VPPN+V+ +AL ++ +VM+P + Sbjct: 20 PFAAMVVTSYTKIAVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAFKAAQN 79 Query: 109 MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS--SHRNTDITKNDH 166 G N + A + EPF F+ +TRE++ + FM A D K+D Sbjct: 80 YGAGSENNRVVVLLDACR---EPFRQFLLKHTREREKAFFMRSAQQIWPKDKADALKSDD 136 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 + +L P+F +SEL +F IGFL+ L F++ID++VA +MAMG+ + PT++++PFK++ Sbjct: 137 L--LVLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLL 194 Query: 227 FFVLIDGWSLLVENLVKSF 245 FV +DGWS+L+ LV S+ Sbjct: 195 LFVAMDGWSMLIHGLVLSY 213 >gi|270285645|ref|ZP_06195039.1| type III secretion system protein [Chlamydia muridarum Nigg] Length = 271 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 73/211 (34%), Positives = 126/211 (59%), Gaps = 17/211 (8%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT------ 102 L+++P L++++T + + II +LR +G+ PP+ V+ +AL ++ YVM PT Sbjct: 63 LALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGMAMYN 122 Query: 103 -LDRSIEMGIQP--LMNNQITETT--AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSS-- 155 + IE P L + + ET A+ + EP F+ NNT + + F ++ + Sbjct: 123 DAKKGIESDAVPRDLFSAEGAETVFVALNKSKEPLRSFLINNTPKPQIQSFYKISQKTFP 182 Query: 156 -HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214 +T +D + ++IP+F++ +++ +FEIG LI LPF +ID++ A +++AM MMML Sbjct: 183 PELRQQLTPSDFV---VVIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQMMML 239 Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 P SISLP K++ V++DGW+LL+E L+ SF Sbjct: 240 SPLSISLPLKLLLVVMVDGWTLLLEGLMISF 270 >gi|15835465|ref|NP_297224.1| type III secretion system protein [Chlamydia muridarum Nigg] gi|270289654|ref|ZP_06195956.1| type III secretion system protein [Chlamydia muridarum Weiss] gi|301337041|ref|ZP_07225243.1| type III secretion system protein [Chlamydia muridarum MopnTet14] gi|8163334|gb|AAF73610.1| type III secretion inner membrane protein SctR [Chlamydia muridarum Nigg] Length = 311 Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 73/211 (34%), Positives = 126/211 (59%), Gaps = 17/211 (8%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT------ 102 L+++P L++++T + + II +LR +G+ PP+ V+ +AL ++ YVM PT Sbjct: 103 LALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGMAMYN 162 Query: 103 -LDRSIEMGIQP--LMNNQITETT--AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSS-- 155 + IE P L + + ET A+ + EP F+ NNT + + F ++ + Sbjct: 163 DAKKGIESDAVPRDLFSAEGAETVFVALNKSKEPLRSFLINNTPKPQIQSFYKISQKTFP 222 Query: 156 -HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214 +T +D + ++IP+F++ +++ +FEIG LI LPF +ID++ A +++AM MMML Sbjct: 223 PELRQQLTPSDFV---VVIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQMMML 279 Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 P SISLP K++ V++DGW+LL+E L+ SF Sbjct: 280 SPLSISLPLKLLLVVMVDGWTLLLEGLMISF 310 >gi|238798580|ref|ZP_04642057.1| Flagellar biosynthetic protein fliP [Yersinia mollaretii ATCC 43969] gi|238717600|gb|EEQ09439.1| Flagellar biosynthetic protein fliP [Yersinia mollaretii ATCC 43969] Length = 207 Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 67/187 (35%), Positives = 112/187 (59%), Gaps = 6/187 (3%) Query: 21 SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 + L +++ P +W ++T + T LS P L+M+T F R IIV +LR +G Sbjct: 25 AQLPGIISQPLANGGQSWSLPIQTLVLITSLSFLPAALLMMTSFTRIIIVLGLLRNALGT 84 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 S PPN V++ LALF+TF++MSP D+ + P ++I+ A+ + A+P FM Sbjct: 85 PSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAMDKGAQPLREFMLR 144 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 TRE DL+L+ +A+ + + + RIL+P+++ SEL+ +F+IGF + +PFLII Sbjct: 145 QTRESDLALYARLANLPP----LEGPEMVPLRILLPAYVTSELKTAFQIGFTVFIPFLII 200 Query: 199 DMIVATI 205 D++VA++ Sbjct: 201 DLVVASV 207 >gi|76574805|gb|ABA47279.1| HrcR [Pseudomonas cichorii] Length = 209 Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 72/209 (34%), Positives = 130/209 (62%), Gaps = 20/209 (9%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108 LS+ P+L+I+ T F + +V I R +G+ PPN+ + +AL T ++M+P + E Sbjct: 10 LSLVPLLMIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFN---E 66 Query: 109 MG--IQPL---MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR------ 157 MG ++ L ++N +A + V EP +FM TR D + + ++ R Sbjct: 67 MGQRVKKLPERLDNFAAMESAGKHVIEPLRLFM---TRNIDPDIQTHLLENTQRMWPKEM 123 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 ++ +++D + +++P+F++SEL+ F+IGFLI +PF++ID+IV+ I++A+GM M+ P Sbjct: 124 SSQASRDDLL---LVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPM 180 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +ISLP K++ FVL+DGW+ L++ L S++ Sbjct: 181 TISLPLKILLFVLVDGWTRLLDGLFYSYM 209 >gi|85059283|ref|YP_454985.1| type III secretion system protein [Sodalis glossinidius str. 'morsitans'] gi|84779803|dbj|BAE74580.1| putative type III secretion apparatus [Sodalis glossinidius str. 'morsitans'] Length = 215 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 68/190 (35%), Positives = 112/190 (58%), Gaps = 3/190 (1%) Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 M T F + +V SILR +G+ VPPN+ + LAL ++ ++M+PT +++ P+ Sbjct: 26 MGTSFLKLAVVLSILRNALGIQQVPPNMALYGLALILSLFIMAPT-ALAVKAQWHPVAAP 84 Query: 118 QITETTAI--QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPS 175 T + + P+ F+R N EK++ F + + + IL+P+ Sbjct: 85 GDTPWASGWDGKALMPYRQFLRRNADEKEIRYFHQLVTKTWPEEARRRVRPDSLLILLPA 144 Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235 F +S+L ++F IG LI LPFL ID++V+ +++AMGMMM+ P +ISLPFK++ F+L GW Sbjct: 145 FTVSQLSQAFRIGLLIYLPFLAIDLLVSNVLLAMGMMMVSPMTISLPFKLLIFMLAGGWD 204 Query: 236 LLVENLVKSF 245 L++ LV+SF Sbjct: 205 LILSQLVQSF 214 >gi|30524904|gb|AAP34349.1|AF499777_17 HrcR [Xanthomonas axonopodis pv. glycines] Length = 200 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 65/202 (32%), Positives = 119/202 (58%), Gaps = 7/202 (3%) Query: 48 ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107 +L + P ++VT + + ++V +LR +G+ VPPN+V+ +AL ++ +VM+P + Sbjct: 1 MLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF 60 Query: 108 EMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITK 163 + + + + EPF F+ +TRE++ + FM A + + Sbjct: 61 KAAQNYGAGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLKS 120 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 +D + +L P+F +SEL +F IGFL+ L F++ID++VA +MAMG+ + PT++++PF Sbjct: 121 DDLL---VLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPF 177 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K++ FV +DGWS+L+ LV S+ Sbjct: 178 KLLLFVAMDGWSMLIHGLVLSY 199 >gi|21230683|ref|NP_636600.1| type III secretion system protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769322|ref|YP_244084.1| type III secretion system protein [Xanthomonas campestris pv. campestris str. 8004] gi|188992474|ref|YP_001904484.1| type III secretion system protein [Xanthomonas campestris pv. campestris str. B100] gi|325921929|ref|ZP_08183740.1| HrcR [Xanthomonas gardneri ATCC 19865] gi|21112271|gb|AAM40524.1| HrcR protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574654|gb|AAY50064.1| HrcR protein [Xanthomonas campestris pv. campestris str. 8004] gi|167734234|emb|CAP52442.1| HrcR protein [Xanthomonas campestris pv. campestris] gi|325547631|gb|EGD18674.1| HrcR [Xanthomonas gardneri ATCC 19865] Length = 214 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 119/202 (58%), Gaps = 7/202 (3%) Query: 48 ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107 +L + P ++VT + + ++V +LR +G+ VPPN+V+ +AL ++ +VM+P + Sbjct: 15 MLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF 74 Query: 108 EMG--IQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS--SHRNTDITK 163 + P +N + EPF F+ +TRE++ + F+ A D K Sbjct: 75 KAAQNYSPGADNSRV-VVLLDACREPFRQFLLKHTREREKAFFIRSAQQIWPKDKADTLK 133 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 D + +L P+F +SEL +F IGFL+ L F++ID++VA +MAMG+ + PT++++PF Sbjct: 134 PD--DLLVLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPF 191 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K++ FV +DGWS+L+ LV S+ Sbjct: 192 KLLLFVALDGWSMLIHGLVLSY 213 >gi|166714030|ref|ZP_02245237.1| type III secretion system protein [Xanthomonas oryzae pv. oryzicola BLS256] gi|111146915|gb|ABH07400.1| HrcR [Xanthomonas oryzae pv. oryzicola] Length = 214 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 66/202 (32%), Positives = 119/202 (58%), Gaps = 7/202 (3%) Query: 48 ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107 +L + P ++VT + + ++V +LR +G+ VPPN+V+ +AL ++ +VM+P + Sbjct: 15 MLGLLPFAALVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF 74 Query: 108 EMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITK 163 + + + + EPF F+ +TRE++ + FM A + + Sbjct: 75 KAAQNYGAGSDNSRIVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLKS 134 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 +D + IL P+F +SEL +F IGFL+ L F++ID++VA +MAMG+ + PT++++PF Sbjct: 135 DDLL---ILAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPF 191 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K++ FV +DGWS+L+ LV S+ Sbjct: 192 KLLLFVAMDGWSILIHGLVLSY 213 >gi|21241175|ref|NP_640757.1| type III secretion system protein [Xanthomonas axonopodis pv. citri str. 306] gi|78045978|ref|YP_362153.1| type III secretion system protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325927673|ref|ZP_08188901.1| HrcR protein [Xanthomonas perforans 91-118] gi|4494848|gb|AAD21321.1| HrcR [Xanthomonas euvesicatoria] gi|21106482|gb|AAM35293.1| HrcR protein [Xanthomonas axonopodis pv. citri str. 306] gi|78034408|emb|CAJ22053.1| HrcR protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325541874|gb|EGD13388.1| HrcR protein [Xanthomonas perforans 91-118] Length = 214 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 65/202 (32%), Positives = 119/202 (58%), Gaps = 7/202 (3%) Query: 48 ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107 +L + P ++VT + + ++V +LR +G+ VPPN+V+ +AL ++ +VM+P + Sbjct: 15 MLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF 74 Query: 108 EMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITK 163 + + + + EPF F+ +TRE++ + FM A + + Sbjct: 75 KAAQNYGAGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLKS 134 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 +D + +L P+F +SEL +F IGFL+ L F++ID++VA +MAMG+ + PT++++PF Sbjct: 135 DDLL---VLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPF 191 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K++ FV +DGWS+L+ LV S+ Sbjct: 192 KLLLFVAMDGWSMLIHGLVLSY 213 >gi|307718614|ref|YP_003874146.1| hypothetical protein STHERM_c09260 [Spirochaeta thermophila DSM 6192] gi|306532339|gb|ADN01873.1| hypothetical protein STHERM_c09260 [Spirochaeta thermophila DSM 6192] Length = 258 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 75/197 (38%), Positives = 118/197 (59%), Gaps = 6/197 (3%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +L++ T F R +V +R +G+ VPP V++ ++LF+T +VM PT + Sbjct: 66 APSILVLTTSFLRIALVLDFIRRALGLQQVPPTQVLMGISLFLTLFVMWPTFQEVYDDSF 125 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTRE--KDLSLFMDMAHSSHRNTDITKNDHIEY 169 PL +I A R P +FM + + + LFM M+ +T HI Sbjct: 126 VPLSRGEIGVEEAYGRAVGPLRIFMYRQMQNDVEPIRLFMRMSGLPRPDTLADVPTHI-- 183 Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229 LIP+F++ EL +F+IG ++ +PF+IIDM+VA+ +M+MGM+MLPP IS PFK++ FV Sbjct: 184 --LIPAFILHELTVAFKIGIILYIPFIIIDMVVASTLMSMGMIMLPPVMISFPFKLLLFV 241 Query: 230 LIDGWSLLVENLVKSFI 246 L+DGW+L+ + L+ SF+ Sbjct: 242 LVDGWTLITQQLLGSFV 258 >gi|15605291|ref|NP_220077.1| type III secretion system protein [Chlamydia trachomatis D/UW-3/CX] gi|76789299|ref|YP_328385.1| type III secretion system protein [Chlamydia trachomatis A/HAR-13] gi|166155652|ref|YP_001653907.1| type III secretion system protein [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|237802991|ref|YP_002888185.1| type III secretion system protein [Chlamydia trachomatis B/Jali20/OT] gi|237804913|ref|YP_002889067.1| type III secretion system protein [Chlamydia trachomatis B/TZ1A828/OT] gi|255311381|ref|ZP_05353951.1| type III secretion system protein [Chlamydia trachomatis 6276] gi|255317682|ref|ZP_05358928.1| type III secretion system protein [Chlamydia trachomatis 6276s] gi|3329003|gb|AAC68164.1| Yop proteins translocation protein R [Chlamydia trachomatis D/UW-3/CX] gi|76167829|gb|AAX50837.1| SctR [Chlamydia trachomatis A/HAR-13] gi|165931640|emb|CAP07216.1| type III secretion system, membrane protein [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|231273213|emb|CAX10126.1| type III secretion system, membrane protein [Chlamydia trachomatis B/TZ1A828/OT] gi|231274225|emb|CAX11019.1| type III secretion system, membrane protein [Chlamydia trachomatis B/Jali20/OT] gi|296436096|gb|ADH18270.1| type III secretion system protein [Chlamydia trachomatis G/9768] gi|296437024|gb|ADH19194.1| type III secretion system protein [Chlamydia trachomatis G/11222] gi|296437956|gb|ADH20117.1| type III secretion system protein [Chlamydia trachomatis G/11074] gi|297140457|gb|ADH97215.1| type III secretion system protein [Chlamydia trachomatis G/9301] Length = 306 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/215 (34%), Positives = 126/215 (58%), Gaps = 17/215 (7%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-- 102 I L+++P L++++T + + II +LR +G+ PP+ V+ +AL ++ YVM PT Sbjct: 94 ILLFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGV 153 Query: 103 -----LDRSIEMGIQP--LMNNQITETT--AIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 + IE P L + + ET A+ + EP F+ NT + + F ++ Sbjct: 154 AMYNDAKKGIESSAVPRDLFSAEGAETVFVALNKSKEPLRSFLIKNTPKPQIQSFYKISQ 213 Query: 154 SS---HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 + +T +D + I+IP+F++ +++ +FEIG LI LPF +ID++ A +++AM Sbjct: 214 KTFPPELRQQLTPSD---FMIIIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQ 270 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMML P SISLP K++ V++DGW+LL+E L+ SF Sbjct: 271 MMMLSPLSISLPLKLLLVVMVDGWTLLLEGLMISF 305 >gi|315186373|gb|EFU20133.1| flagellar biosynthetic protein FliP [Spirochaeta thermophila DSM 6578] Length = 258 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 75/197 (38%), Positives = 118/197 (59%), Gaps = 6/197 (3%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +L++ T F R +V +R +G+ VPP V++ ++LF+T +VM PT + Sbjct: 66 APSILVLTTSFLRIALVLDFIRRALGLQQVPPTQVLMGISLFLTLFVMWPTFQEVYDDSF 125 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTRE--KDLSLFMDMAHSSHRNTDITKNDHIEY 169 PL +I A R P +FM + + + LFM M+ +T HI Sbjct: 126 VPLSRGEIDVEEAYGRAVGPLRIFMYRQMQNNVEPIRLFMRMSGLPRPDTLADVPTHI-- 183 Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229 LIP+F++ EL +F+IG ++ +PF+IIDM+VA+ +M+MGM+MLPP IS PFK++ FV Sbjct: 184 --LIPAFILHELTVAFKIGIILYIPFIIIDMVVASTLMSMGMIMLPPVMISFPFKLLLFV 241 Query: 230 LIDGWSLLVENLVKSFI 246 L+DGW+L+ + L+ SF+ Sbjct: 242 LVDGWTLITQQLLGSFV 258 >gi|166154777|ref|YP_001654895.1| type III secretion system protein [Chlamydia trachomatis 434/Bu] gi|301336052|ref|ZP_07224296.1| type III secretion system protein [Chlamydia trachomatis L2tet1] gi|165930765|emb|CAP04262.1| type III secretion system, membrane protein [Chlamydia trachomatis 434/Bu] Length = 306 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/215 (34%), Positives = 126/215 (58%), Gaps = 17/215 (7%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-- 102 I L+++P L++++T + + II +LR +G+ PP+ V+ +AL ++ YVM PT Sbjct: 94 ILLFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGV 153 Query: 103 -----LDRSIEMGIQP--LMNNQITETT--AIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 + IE P L + + ET A+ + EP F+ NT + + F ++ Sbjct: 154 AMYHDAKKGIESSAVPRDLFSAEGAETVFVALNKSKEPLRSFLIKNTPKPQIQSFYKISQ 213 Query: 154 SS---HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 + +T +D + I+IP+F++ +++ +FEIG LI LPF +ID++ A +++AM Sbjct: 214 KTFPPELRQQLTPSD---FMIIIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQ 270 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMML P SISLP K++ V++DGW+LL+E L+ SF Sbjct: 271 MMMLSPLSISLPLKLLLVVMVDGWTLLLEGLMISF 305 >gi|255348943|ref|ZP_05380950.1| type III secretion system protein [Chlamydia trachomatis 70] gi|255503482|ref|ZP_05381872.1| type III secretion system protein [Chlamydia trachomatis 70s] gi|255507160|ref|ZP_05382799.1| type III secretion system protein [Chlamydia trachomatis D(s)2923] gi|289525607|emb|CBJ15085.1| type III secretion system, membrane protein [Chlamydia trachomatis Sweden2] gi|296435168|gb|ADH17346.1| type III secretion system protein [Chlamydia trachomatis E/150] gi|296438888|gb|ADH21041.1| type III secretion system protein [Chlamydia trachomatis E/11023] Length = 306 Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/215 (34%), Positives = 126/215 (58%), Gaps = 17/215 (7%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-- 102 I L+++P L++++T + + II +LR +G+ PP+ V+ +AL ++ YVM PT Sbjct: 94 ILLFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGV 153 Query: 103 -----LDRSIEMGIQP--LMNNQITETT--AIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 + IE P L + + ET A+ + EP F+ NT + + F ++ Sbjct: 154 AMYNDAKKGIESSAVPRDLFSAEGAETVFVALNKSKEPLRSFLIKNTPKPQIQSFYKISQ 213 Query: 154 SS---HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 + +T +D + I+IP+F++ +++ +FEIG LI LPF +ID++ A +++AM Sbjct: 214 KTFPPELRQQLTPSD---FMIIIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQ 270 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMML P SISLP K++ V++DGW+LL+E L+ SF Sbjct: 271 MMMLSPLSISLPLKLLLVVMVDGWTLLLEGLMISF 305 >gi|297748692|gb|ADI51238.1| type III secretion inner membrane protein SctR [Chlamydia trachomatis D-EC] gi|297749572|gb|ADI52250.1| type III secretion inner membrane protein SctR [Chlamydia trachomatis D-LC] Length = 309 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 74/215 (34%), Positives = 126/215 (58%), Gaps = 17/215 (7%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-- 102 I L+++P L++++T + + II +LR +G+ PP+ V+ +AL ++ YVM PT Sbjct: 97 ILLFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGV 156 Query: 103 -----LDRSIEMGIQP--LMNNQITETT--AIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 + IE P L + + ET A+ + EP F+ NT + + F ++ Sbjct: 157 AMYNDAKKGIESSAVPRDLFSAEGAETVFVALNKSKEPLRSFLIKNTPKPQIQSFYKISQ 216 Query: 154 SS---HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 + +T +D + I+IP+F++ +++ +FEIG LI LPF +ID++ A +++AM Sbjct: 217 KTFPPELRQQLTPSD---FMIIIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQ 273 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMML P SISLP K++ V++DGW+LL+E L+ SF Sbjct: 274 MMMLSPLSISLPLKLLLVVMVDGWTLLLEGLMISF 308 >gi|15618734|ref|NP_225020.1| type III secretion system protein [Chlamydophila pneumoniae CWL029] gi|15836358|ref|NP_300882.1| type III secretion system protein [Chlamydophila pneumoniae J138] gi|16752215|ref|NP_445583.1| type III secretion system protein [Chlamydophila pneumoniae AR39] gi|33242185|ref|NP_877126.1| type III secretion system protein [Chlamydophila pneumoniae TW-183] gi|4377137|gb|AAD18962.1| Yop proteins translocation protein R [Chlamydophila pneumoniae CWL029] gi|6672012|dbj|BAA88643.1| Yop translocation R [Chlamydophila pneumoniae] gi|7189960|gb|AAF38821.1| type III secretion inner membrane protein SctR [Chlamydophila pneumoniae AR39] gi|8979199|dbj|BAA99033.1| Yop translocation R [Chlamydophila pneumoniae J138] gi|33236696|gb|AAP98783.1| YscR [Chlamydophila pneumoniae TW-183] Length = 306 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 74/215 (34%), Positives = 125/215 (58%), Gaps = 17/215 (7%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-- 102 I L+++P L++++T + + II +LR +G+ PP+ V+ +AL ++ YVM PT Sbjct: 94 ILIFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGV 153 Query: 103 -----LDRSIEMGI--QPLMNNQITETT--AIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 + IE Q L + ET A+ + EP F+ NT + + F ++ Sbjct: 154 AMYKDARKEIEANTIPQSLFTAEGAETVFVALNKSKEPLRSFLIRNTPKAQIQSFYKISQ 213 Query: 154 S---SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 S +T +D + I+IP+F++ +++ +FEIG LI LPF +ID++ A +++AM Sbjct: 214 KTFPSEIRAHLTASDFV---IIIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQ 270 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMML P SISLP K++ V++DGW+LL++ L+ SF Sbjct: 271 MMMLSPLSISLPLKLLLIVMVDGWTLLLQGLMISF 305 >gi|21492903|ref|NP_659978.1| type III secretion system protein [Rhizobium etli CFN 42] gi|218508018|ref|ZP_03505896.1| type III secretion system protein [Rhizobium etli Brasil 5] gi|218674847|ref|ZP_03524516.1| type III secretion system protein [Rhizobium etli GR56] gi|21467328|gb|AAM54991.1| type III secretion system translocation protein [Rhizobium etli CFN 42] Length = 217 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 70/209 (33%), Positives = 119/209 (56%), Gaps = 2/209 (0%) Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98 + ++ +S+ P++ ++ T F + +V I+R +G+ PPNL++ ++A+ ++ +V Sbjct: 7 LAQSLAAMAAISMLPVIAVIATSFTKISVVLLIVRNAIGIQQTPPNLLVFAIAIVLSAFV 66 Query: 99 MSPTLDRSIEMGIQPLMNNQITETTA--IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 M+P L S ++ + + A + +VA P FM + + F+ + Sbjct: 67 MNPVLQNSWQLLLAHSGDFGTVSGMADGMIKVAAPLKDFMLKFSDAEVRDFFVQASQKIW 126 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 N T + +L PSF++SEL R+FEIGFLI LPFL+ID V+ I++A+GM M+ P Sbjct: 127 ANAPATPIASDDITVLTPSFLVSELTRAFEIGFLIYLPFLMIDFAVSAILVALGMQMMSP 186 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 T +S P K++ FV IDGW L+E LV S+ Sbjct: 187 TVVSTPLKLLLFVSIDGWRRLLEGLVLSY 215 >gi|187919910|ref|YP_001888941.1| type III secretion system protein [Burkholderia phytofirmans PsJN] gi|187718348|gb|ACD19571.1| Yop virulence translocation R [Burkholderia phytofirmans PsJN] Length = 215 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 119/204 (58%), Gaps = 8/204 (3%) Query: 46 FTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDR 105 F +L + P+++ M T F +F IV ++LR+ +G+ P N+ I +LAL T VM+PT+++ Sbjct: 14 FFVLGLLPLIVTMTTSFTKFSIVLTLLRSAVGVQQAPGNMAISALALAATLVVMAPTMEK 73 Query: 106 ---SIEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161 + +G + + Q + T + Q V P FM ++R + + + A D Sbjct: 74 IGGDLSLG-ERVERGQFPDVTEVYQAVRGPLGEFMMEHSRPSERAFLVTAAKRIDPARDA 132 Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221 + D + +LIP+FMISE+ FE GFL+ + FLIID+++A ++ AMGM+ML PT++S Sbjct: 133 QETD---FSLLIPAFMISEISSGFEAGFLLYMAFLIIDLVIANVLTAMGMVMLSPTTVST 189 Query: 222 PFKVIFFVLIDGWSLLVENLVKSF 245 P K+ V + G S L+ L+ S+ Sbjct: 190 PLKLFVLVSVSGISKLMHGLIVSY 213 >gi|289805125|ref|ZP_06535754.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 117 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 57/119 (47%), Positives = 88/119 (73%), Gaps = 4/119 (3%) Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 + A+P FM TRE DL+LF +A+S + + + RIL+P+++ SEL+ +F+ Sbjct: 1 KGAQPLRAFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSELKTAFQ 56 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 57 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 115 >gi|294665992|ref|ZP_06731255.1| HrcR protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604240|gb|EFF47628.1| HrcR protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 214 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 65/202 (32%), Positives = 119/202 (58%), Gaps = 7/202 (3%) Query: 48 ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107 +L + P ++VT + + ++V +LR +G+ VPPN+V+ +AL ++ +VM+P + Sbjct: 15 MLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF 74 Query: 108 EMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITK 163 + + + + EPF F+ +TRE++ + FM A + + Sbjct: 75 KAAQNYGAGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLKS 134 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 +D + +L P+F +SEL +F IGFL+ L F++ID++VA +MAMG+ + PT++++PF Sbjct: 135 DDLL---VLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPF 191 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K++ FV +DGWS+L+ LV S+ Sbjct: 192 KLLLFVAMDGWSMLMHGLVLSY 213 >gi|190894060|ref|YP_001984354.1| type III secretion system translocation protein [Rhizobium etli CIAT 652] gi|190699721|gb|ACE93804.1| type III secretion system translocation protein [Rhizobium etli CIAT 652] Length = 217 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 70/199 (35%), Positives = 116/199 (58%), Gaps = 2/199 (1%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108 +S+ P++ ++ T F + +V I+R +G+ PPNL++ ++A+ ++ +VM+P L S + Sbjct: 17 ISMLPVIAVIATSFTKISVVLLIVRNAIGIQQTPPNLLVFAIAIVLSAFVMNPVLQNSWQ 76 Query: 109 MGIQPLMNNQITETTA--IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 + + + A + +VA P FM + + F+ + N T Sbjct: 77 LLLAHSGDFGTVSGMADGMIKVAAPLKDFMLKFSDAEVRDFFVQASQKIWANAPATSIAS 136 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 + +L PSF++SEL R+FEIGFLI LPFL+ID V+ I++A+GM M+ PT +S P K++ Sbjct: 137 DDITVLTPSFLVSELTRAFEIGFLIYLPFLMIDFAVSAILVALGMQMMSPTVVSTPLKLL 196 Query: 227 FFVLIDGWSLLVENLVKSF 245 FV IDGW L+E LV S+ Sbjct: 197 LFVSIDGWRRLLEGLVLSY 215 >gi|227820525|ref|YP_002824496.1| type III secretion system protein [Sinorhizobium fredii NGR234] gi|227339524|gb|ACP23743.1| translocation protein in type III secretion RhcR [Sinorhizobium fredii NGR234] Length = 217 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 73/204 (35%), Positives = 118/204 (57%), Gaps = 8/204 (3%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD-- 104 + + + P+ ++ +T F + IV ++R +G+ PPNLV+ +AL +T YV +P + Sbjct: 16 STIGLIPLAVVTMTGFLKISIVLFLIRNALGIQQSPPNLVLYGVALILTVYVTTPLVGEM 75 Query: 105 -RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS--SHRNTDI 161 R++ Q M + + A ++ P + T E + F+ S Sbjct: 76 YRTLS-SEQVDMQSMDSMVRAANQLRAPLQAHLTRYTDENERQFFLQATERIWSEEARAS 134 Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221 K D + IL+P+F+ SEL R+FEIGFL+ LPFL+ID+IV+T++MAMGMMM+ PT IS+ Sbjct: 135 VKTDSL--LILVPAFVSSELTRAFEIGFLLYLPFLVIDLIVSTVLMAMGMMMVSPTLISI 192 Query: 222 PFKVIFFVLIDGWSLLVENLVKSF 245 P K+ FV ++GWS L+ L+ S+ Sbjct: 193 PLKIFLFVAVNGWSRLMHGLILSY 216 >gi|269302615|gb|ACZ32715.1| type III secretion apparatus protein, YscR/HrcR family [Chlamydophila pneumoniae LPCoLN] Length = 306 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 74/215 (34%), Positives = 125/215 (58%), Gaps = 17/215 (7%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-- 102 I L+++P L++++T + + II +LR +G+ PP+ V+ +AL ++ YVM PT Sbjct: 94 ILIFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGV 153 Query: 103 -----LDRSIEMGI--QPLMNNQITETT--AIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 + IE Q L + ET A+ + EP F+ NT + + F ++ Sbjct: 154 AMYKDARKEIEANTIPQSLFTAEGAETVFVALNKSKEPLRSFLIRNTPKAQIQSFYKISQ 213 Query: 154 S---SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 S +T +D + I+IP+F++ +++ +FEIG LI LPF +ID++ A +++AM Sbjct: 214 KTFPSEIREHLTASDFV---IIIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQ 270 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMML P SISLP K++ V++DGW+LL++ L+ SF Sbjct: 271 MMMLSPLSISLPLKLLLIVMVDGWTLLLQGLMISF 305 >gi|53722431|ref|YP_111416.1| type III secretion system protein [Burkholderia pseudomallei K96243] gi|76818756|ref|YP_335589.1| type III secretion system protein [Burkholderia pseudomallei 1710b] gi|126444935|ref|YP_001062995.1| type III secretion system protein [Burkholderia pseudomallei 668] gi|126456985|ref|YP_001075942.1| type III secretion system protein [Burkholderia pseudomallei 1106a] gi|134282501|ref|ZP_01769205.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 305] gi|167724022|ref|ZP_02407258.1| type III secretion system protein [Burkholderia pseudomallei DM98] gi|167742991|ref|ZP_02415765.1| type III secretion system protein [Burkholderia pseudomallei 14] gi|167820162|ref|ZP_02451842.1| type III secretion system protein [Burkholderia pseudomallei 91] gi|167828537|ref|ZP_02460008.1| type III secretion system protein [Burkholderia pseudomallei 9] gi|167849995|ref|ZP_02475503.1| type III secretion system protein [Burkholderia pseudomallei B7210] gi|167898604|ref|ZP_02486005.1| type III secretion system protein [Burkholderia pseudomallei 7894] gi|167906946|ref|ZP_02494151.1| type III secretion system protein [Burkholderia pseudomallei NCTC 13177] gi|167915305|ref|ZP_02502396.1| type III secretion system protein [Burkholderia pseudomallei 112] gi|167923138|ref|ZP_02510229.1| type III secretion system protein [Burkholderia pseudomallei BCC215] gi|217425350|ref|ZP_03456844.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 576] gi|226199064|ref|ZP_03794626.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei Pakistan 9] gi|237510373|ref|ZP_04523088.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei MSHR346] gi|242313556|ref|ZP_04812573.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 1106b] gi|254183805|ref|ZP_04890397.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 1655] gi|254186719|ref|ZP_04893235.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei Pasteur 52237] gi|254194021|ref|ZP_04900453.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei S13] gi|254264816|ref|ZP_04955681.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 1710a] gi|254301600|ref|ZP_04969044.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 406e] gi|4206078|gb|AAD11411.1| SctR [Burkholderia pseudomallei] gi|52212845|emb|CAH38879.1| putative type III secretion-associated protein [Burkholderia pseudomallei K96243] gi|76583229|gb|ABA52703.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 1710b] gi|126224426|gb|ABN87931.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 668] gi|126230753|gb|ABN94166.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 1106a] gi|134246058|gb|EBA46148.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 305] gi|157810966|gb|EDO88136.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 406e] gi|157934403|gb|EDO90073.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei Pasteur 52237] gi|169650772|gb|EDS83465.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei S13] gi|184214338|gb|EDU11381.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 1655] gi|217391601|gb|EEC31629.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 576] gi|225928839|gb|EEH24864.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei Pakistan 9] gi|235002578|gb|EEP52002.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei MSHR346] gi|242136795|gb|EES23198.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 1106b] gi|254215818|gb|EET05203.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 1710a] Length = 216 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 59/199 (29%), Positives = 124/199 (62%), Gaps = 2/199 (1%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108 +S+ P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ YVM+P ++ + Sbjct: 17 ISLLPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYVMAPIGMQAAK 76 Query: 109 MGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 + + +Q ++ A+ EPF F+ +T E++ F+ A + + + Sbjct: 77 ALDEQQLASQSSQAIIQALGSAREPFRSFLEKHTPEREKRFFIRSASVIWPKEEASLLNE 136 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 + +L P+F +SEL +F+IGFL+ + F+I+D+++A +++A+G+ + PT++++PFK++ Sbjct: 137 RDLIVLAPAFALSELTDAFKIGFLLYIVFIIVDLVIANVLLALGLNQITPTNVAIPFKLL 196 Query: 227 FFVLIDGWSLLVENLVKSF 245 FV +DGWS L+ LV ++ Sbjct: 197 LFVAMDGWSTLIHGLVMTY 215 >gi|259909718|ref|YP_002650074.1| type III secretion system protein [Erwinia pyrifoliae Ep1/96] gi|224965340|emb|CAX56872.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-harpin secretion protein [Erwinia pyrifoliae Ep1/96] gi|283479804|emb|CAY75720.1| Harpin secretion protein HrcR [Erwinia pyrifoliae DSM 12163] gi|310766418|gb|ADP11368.1| type III secretion system protein [Erwinia sp. Ejp617] Length = 217 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 72/211 (34%), Positives = 128/211 (60%), Gaps = 9/211 (4%) Query: 42 TFGIF-TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100 TF +F LS+ P+L+I+ TCF + +V I R +G+ VPPN+ + +AL T +VM+ Sbjct: 10 TFALFLGALSLIPMLMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMA 69 Query: 101 PTLDRSIEMGIQ--PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 P ++ + Q +++ T++ P FM +NT D + + + +S R Sbjct: 70 PVFNQMQQQFSQVPADLSSMDNLKTSVSNGVAPLQKFMTHNT---DPDILIHLQENSVRM 126 Query: 159 TDITKNDHIEYR---ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215 +D + ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ Sbjct: 127 WPKEMSDSVSKDNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVA 186 Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 P ++SLP K++ FVLI+GW+ L++ L S++ Sbjct: 187 PMTLSLPLKMLLFVLINGWTRLLDGLFYSYL 217 >gi|294625840|ref|ZP_06704456.1| HrcR protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599868|gb|EFF43989.1| HrcR protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 214 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 67/209 (32%), Positives = 122/209 (58%), Gaps = 21/209 (10%) Query: 48 ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107 +L + P ++VT + + ++V +LR +G+ VPPN+V+ +AL ++ +VM+P Sbjct: 15 MLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAP------ 68 Query: 108 EMGIQPLMNNQITETTA--------IQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SH 156 +G++ Q T + + EPF F+ +TRE++ + FM A Sbjct: 69 -VGMEAFKAAQNYGTGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKD 127 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 + + +D + +L P+F +SEL +F IGFL+ + F++ID++VA +MAMG+ + P Sbjct: 128 KAATLKSDDLL---VLAPAFTLSELTEAFRIGFLLYMVFIVIDLVVANALMAMGLSQVTP 184 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 T++++PFK++ FV +DGWS+L+ LV S+ Sbjct: 185 TNVAIPFKLLLFVAMDGWSMLMHGLVLSY 213 >gi|170738279|ref|YP_001779539.1| Yop virulence translocation R [Burkholderia cenocepacia MC0-3] gi|169820467|gb|ACA95049.1| Yop virulence translocation R [Burkholderia cenocepacia MC0-3] Length = 216 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 64/199 (32%), Positives = 120/199 (60%), Gaps = 10/199 (5%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ +T YVM+P + + Sbjct: 21 PFVAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVTLYVMAPIGMSAADTMRH 80 Query: 113 PLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH----SSHRNTDITKNDH 166 + N E A PF F++ ++RE++ FM AH S N + ++D Sbjct: 81 EQLANSPAEIMVQAFGASQAPFRTFLKAHSRERERLFFMRSAHVIWPESLANA-LHEDDL 139 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 I +L P+F ++EL +F+IGFL+ + F+I+D ++A +++AMG+ + PT++++PFK++ Sbjct: 140 I---VLAPAFTLTELADAFKIGFLLYIAFIIVDFVIANVLLAMGLNQIQPTNVAIPFKLL 196 Query: 227 FFVLIDGWSLLVENLVKSF 245 FV +DGWS L+ L+ ++ Sbjct: 197 LFVAMDGWSALIHGLILTY 215 >gi|292487016|ref|YP_003529886.1| Harpin secretion protein HrcR [Erwinia amylovora CFBP1430] gi|292900599|ref|YP_003539968.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|114152817|sp|Q46646|HRCR_ERWAM RecName: Full=Harpin secretion protein hrcR gi|89474870|gb|AAB06005.2| HrcR [Erwinia amylovora] gi|291200447|emb|CBJ47576.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291552433|emb|CBA19478.1| Harpin secretion protein HrcR [Erwinia amylovora CFBP1430] gi|312171085|emb|CBX79344.1| Harpin secretion protein HrcR [Erwinia amylovora ATCC BAA-2158] Length = 217 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 72/211 (34%), Positives = 128/211 (60%), Gaps = 9/211 (4%) Query: 42 TFGIF-TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100 TF +F LS+ P+L+I+ TCF + +V I R +G+ VPPN+ + +AL T +VM+ Sbjct: 10 TFALFLGALSLIPMLMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMA 69 Query: 101 PTLDRSIEMGIQ--PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 P ++ + Q +++ T++ P FM +NT D + + + +S R Sbjct: 70 PVFNQMQQQFSQVPADLSSMDNLKTSVTNGVAPLQKFMTHNT---DPDILIHLQENSVRM 126 Query: 159 TDITKNDHIEYR---ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215 +D + ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ Sbjct: 127 WPKEMSDSVNKDNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVA 186 Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 P ++SLP K++ FVLI+GW+ L++ L S++ Sbjct: 187 PMTLSLPLKMLLFVLINGWTRLLDGLFYSYL 217 >gi|327192841|gb|EGE59767.1| type III secretion system protein [Rhizobium etli CNPAF512] Length = 204 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 70/199 (35%), Positives = 116/199 (58%), Gaps = 2/199 (1%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108 +S+ P++ ++ T F + +V I+R +G+ PPNL++ ++A+ ++ +VM+P L S + Sbjct: 4 ISMLPVIAVIATSFTKISVVLLIVRNAIGIQQTPPNLLVFAIAIVLSAFVMNPVLQNSWQ 63 Query: 109 MGIQPLMNNQITETTA--IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 + + + A + +VA P FM + + F+ + N T Sbjct: 64 LLLAHSGDFGTVSGMADGMIKVAAPLKDFMLKFSDAEVRDFFVQASQKIWANAPATPIAS 123 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 + +L PSF++SEL R+FEIGFLI LPFL+ID V+ I++A+GM M+ PT +S P K++ Sbjct: 124 DDITVLTPSFLVSELTRAFEIGFLIYLPFLMIDFAVSAILVALGMQMMSPTVVSTPLKLL 183 Query: 227 FFVLIDGWSLLVENLVKSF 245 FV IDGW L+E LV S+ Sbjct: 184 LFVSIDGWRRLLEGLVLSY 202 >gi|159024057|gb|ABW87285.1| HrcR [Xanthomonas fuscans subsp. fuscans] Length = 214 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 68/209 (32%), Positives = 121/209 (57%), Gaps = 21/209 (10%) Query: 48 ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107 +L + P ++VT + + ++V +LR +G+ VPPN+V+ +AL ++ +VM+P Sbjct: 15 MLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAP------ 68 Query: 108 EMGIQPLMNNQITETTA--------IQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SH 156 +G++ Q T + + EPF F+ +TRE++ FM A Sbjct: 69 -VGMEAFKAAQNYGTGSDNSRVVVLLDACREPFRQFLLKHTREREKVFFMRSAQQIWPKD 127 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 + + +D + +L P+F +SEL +F IGFL+ L F++ID++VA +MAMG+ + P Sbjct: 128 KAATLKSDDLL---VLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTP 184 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 T++++PFK++ FV +DGWS+L+ LV S+ Sbjct: 185 TNVAIPFKLLLFVAMDGWSMLMHGLVLSY 213 >gi|269138236|ref|YP_003294936.1| type three secretion apparatus protein R [Edwardsiella tarda EIB202] gi|61743015|gb|AAX55235.1| EsaR [Edwardsiella tarda] gi|62199649|gb|AAX76923.1| EsaR [Edwardsiella tarda] gi|267983896|gb|ACY83725.1| type three secretion apparatus protein R [Edwardsiella tarda EIB202] gi|304558279|gb|ADM40943.1| EsaR [Edwardsiella tarda FL6-60] Length = 215 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 66/196 (33%), Positives = 118/196 (60%), Gaps = 11/196 (5%) Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115 ++M T F + +VF++LR +G+ +PPN+ + LAL +T ++M+P + +Q + Sbjct: 24 IVMGTSFLKLSVVFALLRNALGIQQIPPNIALYGLALILTLFIMTP-----VGTAVQARL 78 Query: 116 NNQITE--TTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169 + E TT + R+++ P+ F+R +T L F +A S + + Sbjct: 79 ADAPAEAQTTLLARLSDNTLDPYRQFLRQHTSATQLHFFRQVATKSWPASVREQISDDSL 138 Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229 +L+P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +IS+PFK++ F+ Sbjct: 139 LLLMPAFAVSQLVEAFQIGLLLFLPFIAIDLIVSNILLAMGMMMVSPMTISMPFKLLVFI 198 Query: 230 LIDGWSLLVENLVKSF 245 L+ GW L+ L+ S+ Sbjct: 199 LVGGWDKLLGQLLLSY 214 >gi|119714990|ref|YP_921955.1| flagellar biosynthesis protein FliP [Nocardioides sp. JS614] gi|119535651|gb|ABL80268.1| flagellar biosynthetic protein FliP [Nocardioides sp. JS614] Length = 266 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 85/212 (40%), Positives = 139/212 (65%), Gaps = 5/212 (2%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 S ST + G+ T++S+ P +L+ T F + +V + R +G+ PPN V+ LALF Sbjct: 58 SPSTSVTVLIGL-TLISLLPAILLSCTAFTKIFVVLGLTRNALGLQQTPPNQVLAGLALF 116 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 ++ +VM P L E+G+QP +N T + AIQ EP FM +NT + +L L ++A Sbjct: 117 LSLFVMGPVLSDINEVGLQPYLNGDKTTSVAIQDGIEPLRDFMLDNTDDDELMLLTNVA- 175 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 R+ + D + LIP+F+++EL+++F IGF+I +PFL+ID++V+ +MA+GMMM Sbjct: 176 --GRDLPEDRAD-VSTATLIPAFVLTELKQAFIIGFIIFIPFLVIDLVVSGALMALGMMM 232 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PP +SLPFK++ FVL+DGW+L++++LV S+ Sbjct: 233 MPPVMVSLPFKLLLFVLVDGWALVIKSLVASY 264 >gi|58579704|ref|YP_198720.1| type III secretion system protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58424298|gb|AAW73335.1| hrpD2 [Xanthomonas oryzae pv. oryzae KACC10331] Length = 226 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 66/202 (32%), Positives = 119/202 (58%), Gaps = 7/202 (3%) Query: 48 ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107 +L + P ++VT + + ++V +LR +G+ VPPN+V+ +AL ++ +VM+P + Sbjct: 27 MLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF 86 Query: 108 EMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITK 163 + + + + EPF F+ +T E++ + FM A + T + Sbjct: 87 KAAQNYGAGSDNSRIVVLLDACREPFRQFLLKHTPEREKAFFMRSAQQIWPKDKATTLKS 146 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 +D + IL P+F +SEL +F IGFL+ L F++ID++VA +MAMG+ + PT++++PF Sbjct: 147 DDLL---ILAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPF 203 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K++ FV +DGWS+L+ LV S+ Sbjct: 204 KLLLFVAMDGWSMLIHGLVLSY 225 >gi|46445836|ref|YP_007201.1| type III secretion system protein [Candidatus Protochlamydia amoebophila UWE25] gi|46399477|emb|CAF22926.1| putative type III secretion inner membrane protein SctR [Candidatus Protochlamydia amoebophila UWE25] Length = 323 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 66/208 (31%), Positives = 123/208 (59%), Gaps = 19/208 (9%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +++++T F + ++V S+LRT +G+ PPN +I +A ++ ++M PT + + Sbjct: 119 PFIIMILTSFLKIVVVLSLLRTALGVQQAPPNQIINGVAFLLSLFIMYPTAIKMYDAAQT 178 Query: 113 PLMNNQITET-------TAIQRVAE----PFWVFMRNNTREKDLSLFMDMAH----SSHR 157 + + E+ T + VA P +++ N+ + +LF + + +R Sbjct: 179 AINQPNVPESFLSPGSSTYVIEVASAASGPMKEYLKRNSSSRHQALFYRLVYRGLPEDYR 238 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 T + +D I +L+PS++ +L+ +FEIG LI +PF +ID++ + I++AMGMMML P Sbjct: 239 ET-LKPDDFI---VLVPSYITGQLKDAFEIGVLIYIPFFVIDLVTSNILLAMGMMMLSPV 294 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 +IS+P K+ V++DGW++L+E LVK+F Sbjct: 295 TISMPLKLFLLVMLDGWTILIEGLVKTF 322 >gi|34498458|ref|NP_902673.1| flagellar biosynthesis protein FliP [Chromobacterium violaceum ATCC 12472] gi|34104313|gb|AAQ60672.1| flagellar biosynthetic protein fliP [Chromobacterium violaceum ATCC 12472] Length = 248 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 81/213 (38%), Positives = 128/213 (60%), Gaps = 7/213 (3%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D +I T I+ + T L + P+L++M+T F RF+IV S+LR +G+ PN +I +A Sbjct: 39 DFTIKTQILI---LMTALGLLPVLVLMMTSFTRFVIVLSLLRQALGLQQGLPNRLITGVA 95 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 L +T VM P + + P ++IT A++ A+P FM T + L+ + Sbjct: 96 LILTLLVMRPVGLQVWNEAMVPFDQDKITMQQALEIAAKPVSRFMLAQTGKTALA---QV 152 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 A S DH + + + +F++SEL+ +F+IG ++ +PFL+ID++V++++MAMGM Sbjct: 153 ARLSGEENVARPEDH-AFTVKLAAFVLSELKTAFQIGCMLFIPFLVIDLVVSSVLMAMGM 211 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 MML P ISLP K++ FVL+DGWSL V LV S Sbjct: 212 MMLSPLVISLPLKLLLFVLVDGWSLTVNTLVTS 244 >gi|12802687|gb|AAK08058.1|AF320050_2 HrcR [Xanthomonas oryzae pv. oryzae] gi|9711593|dbj|BAB07862.1| HrcR [Xanthomonas oryzae pv. oryzae] gi|24251298|gb|AAN46417.1| HrcR [Xanthomonas oryzae pv. oryzae] Length = 200 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 66/202 (32%), Positives = 119/202 (58%), Gaps = 7/202 (3%) Query: 48 ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107 +L + P ++VT + + ++V +LR +G+ VPPN+V+ +AL ++ +VM+P + Sbjct: 1 MLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF 60 Query: 108 EMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITK 163 + + + + EPF F+ +T E++ + FM A + T + Sbjct: 61 KAAQNYGAGSDNSRIVVLLDACREPFRQFLLKHTPEREKAFFMRSAQQIWPKDKATTLKS 120 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 +D + IL P+F +SEL +F IGFL+ L F++ID++VA +MAMG+ + PT++++PF Sbjct: 121 DDLL---ILAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPF 177 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K++ FV +DGWS+L+ LV S+ Sbjct: 178 KLLLFVAMDGWSMLIHGLVLSY 199 >gi|188532666|ref|YP_001906463.1| type III secretion system protein [Erwinia tasmaniensis Et1/99] gi|188027708|emb|CAO95561.1| HrcR protein (hrp cluster) [Erwinia tasmaniensis Et1/99] Length = 217 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 73/220 (33%), Positives = 127/220 (57%), Gaps = 27/220 (12%) Query: 42 TFGIF-TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100 TF +F LS+ P+L+I+ TCF + +V I R +G+ VPPN+ + +AL T +VM+ Sbjct: 10 TFALFLGALSLIPMLMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMA 69 Query: 101 PTLDRSIEMGIQPLMNNQITETTA-----------IQRVAEPFWVFMRNNTREKDLSLFM 149 P ++ M Q +++ A + P FM +NT D + + Sbjct: 70 PVFNQ---------MQQQFSQSPADLSSMDSLKNSVTHGVAPLQKFMTHNT---DPDILI 117 Query: 150 DMAHSSHRNTDITKNDHIEYR---ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 + +S R +D + ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ ++ Sbjct: 118 HLQENSVRMWPKEMSDSVSKDNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVL 177 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +A+GM M+ P ++SLP K++ FVLI+GW+ L++ L S++ Sbjct: 178 LALGMQMVAPMTLSLPLKMLLFVLINGWTRLLDGLFYSYL 217 >gi|84621752|ref|YP_449124.1| type III secretion system protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188574345|ref|YP_001911274.1| type III secretion system protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|7288131|dbj|BAA92826.1| hrpD2 [Xanthomonas oryzae pv. oryzae] gi|50428356|dbj|BAD29993.1| HrcR [Xanthomonas oryzae pv. oryzae] gi|84365692|dbj|BAE66850.1| HrcR protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188518797|gb|ACD56742.1| type III secretion apparatus protein, YscR/HrcR family [Xanthomonas oryzae pv. oryzae PXO99A] Length = 214 Score = 125 bits (313), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 66/202 (32%), Positives = 119/202 (58%), Gaps = 7/202 (3%) Query: 48 ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107 +L + P ++VT + + ++V +LR +G+ VPPN+V+ +AL ++ +VM+P + Sbjct: 15 MLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF 74 Query: 108 EMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITK 163 + + + + EPF F+ +T E++ + FM A + T + Sbjct: 75 KAAQNYGAGSDNSRIVVLLDACREPFRQFLLKHTPEREKAFFMRSAQQIWPKDKATTLKS 134 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 +D + IL P+F +SEL +F IGFL+ L F++ID++VA +MAMG+ + PT++++PF Sbjct: 135 DDLL---ILAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPF 191 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K++ FV +DGWS+L+ LV S+ Sbjct: 192 KLLLFVAMDGWSMLIHGLVLSY 213 >gi|315126005|ref|YP_004068008.1| flagellar biosynthesis protein FliP [Pseudoalteromonas sp. SM9913] gi|315014519|gb|ADT67857.1| flagellar biosynthesis protein FliP [Pseudoalteromonas sp. SM9913] Length = 250 Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 75/193 (38%), Positives = 117/193 (60%), Gaps = 4/193 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P LL+++T F R IIV +ILR MG+ PPN ++I ++L +T +M P + Sbjct: 58 PALLMVLTSFTRIIIVLAILRQAMGLQQSPPNKILIGISLMLTMLIMRPVWQDIYQNAYT 117 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P I A+ +P FM TRE +L + +A+ T + I + +L Sbjct: 118 PFQQQTIGLEDALLTAEKPLRAFMLRQTRESELRQVLLIANEPTTLT----AEEIPFEVL 173 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 +P+F++SEL +F+IGF++ +PFLIID++V++++M+MGMMML P ISLPFK++ FVL D Sbjct: 174 MPAFVLSELTTAFQIGFMLFIPFLIIDLVVSSVLMSMGMMMLSPLIISLPFKLMVFVLAD 233 Query: 233 GWSLLVENLVKSF 245 GWS++ L +F Sbjct: 234 GWSMIAGTLAATF 246 >gi|325917011|ref|ZP_08179250.1| HrcR protein [Xanthomonas vesicatoria ATCC 35937] gi|325536762|gb|EGD08519.1| HrcR protein [Xanthomonas vesicatoria ATCC 35937] Length = 214 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 67/202 (33%), Positives = 118/202 (58%), Gaps = 7/202 (3%) Query: 48 ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107 +L + P ++VT + + ++V +LR +G+ VPPN+V+ +AL ++ +VM+P + Sbjct: 15 MLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF 74 Query: 108 EMG--IQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS--SHRNTDITK 163 + P +N + EPF F+ +T E++ + F+ A D K Sbjct: 75 KAAQNYSPGADNSRV-VVLLDACREPFRQFLLKHTHEREKAFFIRSAQQIWPKDKADTLK 133 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 D + +L P+F +SEL +F IGFL+ L F++ID++VA +MAMG+ + PT++++PF Sbjct: 134 PD--DLLVLAPAFTLSELTDAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPF 191 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K++ FV +DGWS+L+ LV S+ Sbjct: 192 KLLLFVALDGWSMLIHGLVLSY 213 >gi|171322880|ref|ZP_02911585.1| Yop virulence translocation R [Burkholderia ambifaria MEX-5] gi|171091754|gb|EDT37284.1| Yop virulence translocation R [Burkholderia ambifaria MEX-5] Length = 216 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 60/203 (29%), Positives = 124/203 (61%), Gaps = 8/203 (3%) Query: 48 ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107 ++S+ P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ Y+M+P + Sbjct: 16 VMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAPIGFAAQ 75 Query: 108 EMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAH---SSHRNTDIT 162 + ++ Q T+ A EPF F+ ++RE++ F+ A + Sbjct: 76 QQLQGQTLSPQPTQAMLQAFGAAKEPFRQFLAAHSREREKRFFLRSASVIWPKAAAAQLR 135 Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222 ++D I +L P+F ++++ +F IGF++ + F+I+D+++A ++M+MGM + PT++++P Sbjct: 136 EDDLI---VLAPAFTLAQMTDAFRIGFILYIAFIIVDLVIANVLMSMGMNQVQPTNVAIP 192 Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245 FK++ FV++DGWS LV LV ++ Sbjct: 193 FKLMLFVVMDGWSTLVHGLVLTY 215 >gi|206895630|ref|YP_002246700.1| flagellar biosynthetic protein FliP [Coprothermobacter proteolyticus DSM 5265] gi|206738247|gb|ACI17325.1| flagellar biosynthetic protein FliP [Coprothermobacter proteolyticus DSM 5265] Length = 218 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 61/201 (30%), Positives = 114/201 (56%), Gaps = 8/201 (3%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T+ ++AP ++ T F R ++VF+ +R+ +G+ PP V +LAL +TF +M P Sbjct: 25 LLTVFTLAPSFIMFFTSFLRILVVFAFMRSALGLQQFPPAQVFTALALILTFLIMGPVFS 84 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + + P Q+ + +P +M + ++L+ ++ + +N + T Sbjct: 85 QVYQQAWVPYSQGQMDFQQFLSAAEKPVGDWMLKQVKPEELNTMASISGTDPKNPNFTT- 143 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 L +FM+SEL+ +F +G L+ LPF+ +D+I+A+++M++GM M+PP ISLP K Sbjct: 144 -------LASAFMVSELKTAFTMGLLLYLPFIALDVIIASVLMSLGMFMIPPAMISLPLK 196 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FV +GW ++ LV+SF Sbjct: 197 ILLFVAANGWDTVIMGLVRSF 217 >gi|238899257|ref|YP_002924940.1| type III secretion system protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229467018|gb|ACQ68792.1| type III secretion system protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 216 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 76/202 (37%), Positives = 129/202 (63%), Gaps = 6/202 (2%) Query: 48 ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRS 106 +LSI P+L++M TCF + +VFS+LR +G+ PPN+ I LAL +T ++M+P L+ + Sbjct: 16 LLSIFPLLVVMGTCFLKLSVVFSLLRNALGVQQTPPNIAIYGLALVLTIFIMAPVGLEVN 75 Query: 107 IEMGIQPLMNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHSS--HRNTDITK 163 + + L + T I A +P+ F+ +NT + ++ F DM ++ + D Sbjct: 76 ESLKGEKLSQDFGTFVEQINSKALDPYRQFLLHNTSSEQINFFSDMIKNNWPKKYRDKVA 135 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 +D + IL+P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPF Sbjct: 136 SDSL--LILMPAFTVSQLIEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMMSPMTISLPF 193 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K++ F+L+ GW +++ L S+ Sbjct: 194 KILIFLLVGGWDMILGQLAGSY 215 >gi|167828878|ref|ZP_02460349.1| type III secretion system protein [Burkholderia pseudomallei 9] gi|226198433|ref|ZP_03794001.1| type III secretion inner membrane protein SctR [Burkholderia pseudomallei Pakistan 9] gi|225929490|gb|EEH25509.1| type III secretion inner membrane protein SctR [Burkholderia pseudomallei Pakistan 9] Length = 216 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 59/200 (29%), Positives = 121/200 (60%), Gaps = 2/200 (1%) Query: 48 ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107 ++S+ P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ Y+M+P + Sbjct: 16 VMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAPIGFAAQ 75 Query: 108 EMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165 + M+ Q T+ A EPF F+ ++RE++ F+ A + Sbjct: 76 QQLQGQAMSPQPTQAMLQAFGAAKEPFRRFLAAHSREREKRFFLRSASVIWPQAAAAQLR 135 Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225 + +L P+F ++++ +F IGF++ + F+I+D+++A ++M+MGM + PT++++PFK+ Sbjct: 136 DDDLIVLAPAFTLAQMTDAFRIGFILYIAFIIVDLVIANVLMSMGMNQVQPTNVAIPFKL 195 Query: 226 IFFVLIDGWSLLVENLVKSF 245 + FV++DGWS LV LV ++ Sbjct: 196 MLFVVMDGWSTLVHGLVLTY 215 >gi|256259402|gb|ACU65039.1| HrcR [Pseudomonas syringae pv. syringae] Length = 208 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/212 (35%), Positives = 123/212 (58%), Gaps = 26/212 (12%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108 LS+ P LL++ T F + V I R +G+ VPPN+ + +AL T +VM+P Sbjct: 9 LSLLPFLLVVCTSFLKIASVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVFSEIAT 68 Query: 109 MGI-QPLMNNQITETTAIQRVAE----PFWVFMRNNT--------REKDLSLF-MDMAHS 154 + PL Q+ +T + R A+ P FM +N E L ++ DMA + Sbjct: 69 IAQDNPL---QLRDTRDLTRSAKALLAPLQAFMNHNVDPDVLTHLHENALRMWPKDMAAA 125 Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214 + R + +LIP+F++SEL+ +FEIGFLI +PF++ID+IV+ +++A+GM M+ Sbjct: 126 ASRG---------DLLLLIPAFVLSELQAAFEIGFLIYIPFIVIDLIVSNLLLALGMQMV 176 Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 P +ISLP K++ FVL+ GW+ L+++L S++ Sbjct: 177 SPMTISLPLKILLFVLVSGWTRLLDSLFYSYM 208 >gi|323972752|gb|EGB67952.1| flagellar biosynthetic protein FliP [Escherichia coli TA007] Length = 221 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 72/189 (38%), Positives = 111/189 (58%), Gaps = 9/189 (4%) Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66 L+L+TP L FA+ L + + P +W V+T T L+ P +L+M+T F R I Sbjct: 12 LWLITP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A++ Sbjct: 69 IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 + A+P FM TRE DL LF +A++ + + + RIL+P+++ SEL+ +F+ Sbjct: 129 KGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQ 184 Query: 187 IGFLIILPF 195 IGF I PF Sbjct: 185 IGFTIFHPF 193 >gi|302185358|ref|ZP_07262031.1| type III secretion system protein [Pseudomonas syringae pv. syringae 642] Length = 217 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/212 (35%), Positives = 123/212 (58%), Gaps = 26/212 (12%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108 LS+ P LL++ T F + V I R +G+ VPPN+ + +AL T +VM+P Sbjct: 18 LSLLPFLLVVCTSFLKIASVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVFSEIAT 77 Query: 109 MGI-QPLMNNQITETTAIQRVAE----PFWVFMRNNT--------REKDLSLF-MDMAHS 154 + PL Q+ +T + R A+ P FM +N E L ++ DMA + Sbjct: 78 IAQDNPL---QLRDTRDLTRSAKALLAPLQAFMNHNVDPDVLTHLHENALRMWPKDMAAA 134 Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214 + R + +LIP+F++SEL+ +FEIGFLI +PF++ID+IV+ +++A+GM M+ Sbjct: 135 ASRG---------DLLLLIPAFVLSELQAAFEIGFLIYIPFIVIDLIVSNLLLALGMQMV 185 Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 P +ISLP K++ FVL+ GW+ L+++L S++ Sbjct: 186 SPMTISLPLKILLFVLVSGWTRLLDSLFYSYM 217 >gi|94986979|ref|YP_594912.1| type III secretion system protein [Lawsonia intracellularis PHE/MN1-00] gi|94731228|emb|CAJ54591.1| translocation protein in type III secretion [Lawsonia intracellularis PHE/MN1-00] Length = 216 Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 68/203 (33%), Positives = 124/203 (61%), Gaps = 9/203 (4%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108 L +AP +++MVT + + ++V S++R +G+ VPP +V+ LA+ ++ ++M+P + + Sbjct: 16 LGLAPFVIMMVTSYVKIVVVTSLIRNALGVQQVPPAIVMNGLAIILSIFIMAPVYMKMED 75 Query: 109 MGIQ---PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDIT 162 + ++ P + A+ P F+ N E + M A ++ I+ Sbjct: 76 LYLKTALPSSPAALEVIKALYDATPPLREFLIRNADESTIRGLMVTAKRIWPKDQHETIS 135 Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222 +N+ + I+IP+F I+EL +SF+IGFL+ LPF+ ID++V+ I++AMGMMM+ P +ISLP Sbjct: 136 RNNLL---IIIPAFTITELTKSFQIGFLLYLPFVAIDLVVSNILLAMGMMMVSPMTISLP 192 Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245 FK++ FV +DGW + + L+ S+ Sbjct: 193 FKLLLFVTLDGWLKISQGLMLSY 215 >gi|329902179|ref|ZP_08273068.1| type III secretion protein HrcR [Oxalobacteraceae bacterium IMCC9480] gi|327548850|gb|EGF33479.1| type III secretion protein HrcR [Oxalobacteraceae bacterium IMCC9480] Length = 217 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 116/204 (56%), Gaps = 4/204 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + +L++ P++++ T F + +V + R +G+ VPP L I +AL +T +VMSPT+ Sbjct: 14 LLAMLALVPLIVVTTTSFLKIALVMLVTRNALGVQQVPPTLAIYGIALSLTLFVMSPTV- 72 Query: 105 RSIEMGIQPLMNNQITETTAI---QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161 + I + + Q T + Q EP FM + + + +F+ A Sbjct: 73 QEIGNHVAAMEAEQTTTKRGVADAQIAFEPLRTFMLKHCKPEQREIFLASAKKLWPKEFA 132 Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221 + + +L+P+F++SEL+ +E+ FLI +PF++ID++V+ ++MA+GM + P +I++ Sbjct: 133 AEAKSTDVLVLVPAFVVSELQTGYEVAFLIYIPFVVIDLLVSNLLMALGMQQVSPQTITV 192 Query: 222 PFKVIFFVLIDGWSLLVENLVKSF 245 P K++ FV++DGW L+ L S+ Sbjct: 193 PLKLLLFVMVDGWGKLLNALAMSY 216 >gi|323388136|gb|ADX60332.1| type III secretion protein RscR [Pseudomonas fluorescens] Length = 217 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 75/216 (34%), Positives = 127/216 (58%), Gaps = 34/216 (15%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108 LS+ P+LLI+ T F + +IV I R +G+ VPP++ I +AL T ++M+P Sbjct: 18 LSLMPMLLIICTSFLKIVIVLMITRNAIGVQQVPPSMAINGIALAATLFIMAP------- 70 Query: 109 MGIQPLMNNQIT--ETTAIQRVAE-------PFWVFMRNNTREKDLSLFMD--------- 150 +G Q N + + +T+++Q + E P FM NT L+ ++ Sbjct: 71 VGYQIAENVKASPVDTSSVQSLLETGQAAIQPLRAFMLRNTDADVLTHLLENSARMWPPE 130 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 MA S+ R I +L+P+F++S+L+ FEIGFLI +PF++ID+IV+ +++A+G Sbjct: 131 MAQSTQREDLI---------LLVPAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALG 181 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 M M+ P +ISLP K++ FV++ GWS L+++L S++ Sbjct: 182 MQMVSPMTISLPLKLLLFVMVSGWSRLLDSLFLSYL 217 >gi|167840284|ref|ZP_02466968.1| type III secretion system protein [Burkholderia thailandensis MSMB43] Length = 216 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 59/200 (29%), Positives = 121/200 (60%), Gaps = 2/200 (1%) Query: 48 ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107 ++S+ P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ Y+M+P + Sbjct: 16 VMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAPIGFAAQ 75 Query: 108 EMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165 + ++ Q T+ A EPF F+ ++RE++ F+ A + Sbjct: 76 QQLQGQALSPQPTQAMLQAFGAAKEPFRRFLAAHSREREKRFFLRSASVIWPKAAAAQLR 135 Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225 + +L P+F ++++ +F IGFL+ + F+I+D+++A ++M+MGM + PT++++PFK+ Sbjct: 136 DDDLIVLAPAFTLAQMTDAFRIGFLLYIAFIIVDLVIANVLMSMGMNQVQPTNVAIPFKL 195 Query: 226 IFFVLIDGWSLLVENLVKSF 245 + FV++DGWS LV LV ++ Sbjct: 196 MLFVVMDGWSTLVHGLVLTY 215 >gi|171316782|ref|ZP_02905993.1| Yop virulence translocation R [Burkholderia ambifaria MEX-5] gi|171098040|gb|EDT42856.1| Yop virulence translocation R [Burkholderia ambifaria MEX-5] Length = 216 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 121/204 (59%), Gaps = 10/204 (4%) Query: 48 ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP---TLD 104 ++S+ P + ++VT + + ++V +LR +G+ VPPN+VI +A+ ++ YVM+P + Sbjct: 16 LISLVPFVAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVINGIAILVSVYVMAPVGMSAL 75 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH---SSHRNTDI 161 R IE P N + EPF F+ + ++ F+ A + Sbjct: 76 RDIESK-PPAGNASEAVIQILGNAREPFREFLAKHAATREKRFFLRSASIVWPKEAAAAL 134 Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221 +ND I +L P+F +++L +F+IGFL+ + F+++D+++A +++AMG+ + PT++++ Sbjct: 135 QENDLI---VLAPAFALTQLTDAFKIGFLLYIAFIVLDLVIANVLLAMGLNQVNPTNVAI 191 Query: 222 PFKVIFFVLIDGWSLLVENLVKSF 245 PFK++ FV++DGWS L+ L+ SF Sbjct: 192 PFKLLLFVVMDGWSTLIHGLIVSF 215 >gi|29840693|ref|NP_829799.1| type III secretion system protein [Chlamydophila caviae GPIC] gi|29835043|gb|AAP05677.1| type III secretion inner membrane protein SctR [Chlamydophila caviae GPIC] Length = 303 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 70/212 (33%), Positives = 123/212 (58%), Gaps = 11/212 (5%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-- 102 I L+++P L++++T + + II +LR +G+ PP+ V+ +AL ++ YVM PT Sbjct: 91 ILIFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGV 150 Query: 103 -----LDRSIEMGIQP--LMNNQITETT--AIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 + I+ P L + + ET A+ + EP F+ NT + + F ++ Sbjct: 151 AMYNDARKEIQGNAIPRDLFSAEGAETVFVALNKSKEPLRSFLIRNTPKAQIQSFYKISQ 210 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 + ++ I+IP+F++ +++ +FEIG LI LPF +ID++ A +++AM MMM Sbjct: 211 KTFPQEIREHMTASDFVIIIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQMMM 270 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 L P SISLP K++ V++DGW+LL++ L+ SF Sbjct: 271 LSPLSISLPLKLLLVVMVDGWTLLLQGLMISF 302 >gi|83718233|ref|YP_438951.1| type III secretion system protein [Burkholderia thailandensis E264] gi|167577333|ref|ZP_02370207.1| type III secretion system protein [Burkholderia thailandensis TXDOH] gi|167615481|ref|ZP_02384116.1| type III secretion system protein [Burkholderia thailandensis Bt4] gi|257142055|ref|ZP_05590317.1| type III secretion system protein [Burkholderia thailandensis E264] gi|83652058|gb|ABC36122.1| type III secretion inner membrane protein SctR [Burkholderia thailandensis E264] Length = 216 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 121/200 (60%), Gaps = 2/200 (1%) Query: 48 ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107 ++S+ P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ Y+M+P + Sbjct: 16 VMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAPIGFAAQ 75 Query: 108 EMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165 + ++ Q T+ A EPF F+ ++RE++ F+ A + Sbjct: 76 QQLQGQALSPQPTQAMLQAFGAAKEPFRQFLAAHSREREKRFFLRSASVVWPKAAAAQLR 135 Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225 + +L P+F ++++ +F IGF++ + F+I+D+++A ++M+MGM + PT++++PFK+ Sbjct: 136 EDDLIVLAPAFTLAQMTDAFRIGFILYIAFVIVDLVIANVLMSMGMNQVQPTNVAIPFKL 195 Query: 226 IFFVLIDGWSLLVENLVKSF 245 + FV++DGWS LV LV ++ Sbjct: 196 MLFVVMDGWSTLVHGLVLTY 215 >gi|330443947|ref|YP_004376933.1| YscR/HrcR family type III secretion apparatus protein [Chlamydophila pecorum E58] gi|328807057|gb|AEB41230.1| type III secretion apparatus protein, YscR/HrcR family [Chlamydophila pecorum E58] Length = 305 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 71/212 (33%), Positives = 121/212 (57%), Gaps = 11/212 (5%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-- 102 I L+++P L++++T + + II +LR +G+ PP+ V+ +AL ++ YVM PT Sbjct: 93 ILIFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGA 152 Query: 103 -----LDRSIEMGIQP--LMNNQITETT--AIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 + IE P L + ET A + EP F+ NT + + F ++ Sbjct: 153 AMYKDAKKEIEANTIPRNLFTAEGAETVFVAFNKSKEPLRNFLIRNTPKAQIQSFYKISQ 212 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 + ++ I+IP+F++ +++ +FEIG +I LPF +ID++ A I++AM MMM Sbjct: 213 KTFPAEIREHLSATDFVIVIPAFIMGQIKNAFEIGVMIYLPFFVIDLVTANILVAMQMMM 272 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 L P SISLP K++ V++DGW+LL++ L+ SF Sbjct: 273 LSPLSISLPLKLLLVVMVDGWTLLLQGLMISF 304 >gi|15042142|gb|AAK81923.1|AF292566_7 RscR [Pseudomonas fluorescens] Length = 217 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 125/204 (61%), Gaps = 10/204 (4%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT---LDR 105 LS+ P+LL++ T F + +IV I R +G+ VPP++ I +AL T ++M+P + Sbjct: 18 LSLMPMLLVVCTAFLKIVIVLMITRNAIGVQQVPPSMAINGIALATTLFIMAPVGYEIAE 77 Query: 106 SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDIT 162 S++ L N Q TA + + +P FM N + L+ ++ + ++ Sbjct: 78 SVKALPLDLSNVQTLLQTANEAI-KPLRAFMLRNIDPEVLTHLLENTARLWPAQMAQEVQ 136 Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222 + D I +LIP+F++S+L+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P +ISLP Sbjct: 137 REDLI---LLIPAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTISLP 193 Query: 223 FKVIFFVLIDGWSLLVENLVKSFI 246 K++ FV++ GWS L+++L S++ Sbjct: 194 LKLLLFVMVSGWSRLLDSLFLSYL 217 >gi|167566298|ref|ZP_02359214.1| type III secretion system protein [Burkholderia oklahomensis EO147] gi|167573400|ref|ZP_02366274.1| type III secretion system protein [Burkholderia oklahomensis C6786] Length = 216 Score = 123 bits (308), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 121/200 (60%), Gaps = 2/200 (1%) Query: 48 ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107 ++S+ P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ Y+M+P + Sbjct: 16 VMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAPIGFAAQ 75 Query: 108 EMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165 + ++ Q T+ A EPF F+ ++RE++ F+ A + Sbjct: 76 QQLQGQALSPQPTQAMLQAFGAAKEPFRQFLAAHSREREKRFFLRSASVIWPKAAAAQLR 135 Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225 + +L P+F ++++ +F IGF++ + F+I+D+++A ++M+MGM + PT++++PFK+ Sbjct: 136 EDDLIVLAPAFTLAQMTDAFRIGFILYIAFIIVDLVIANVLMSMGMNQVQPTNVAIPFKL 195 Query: 226 IFFVLIDGWSLLVENLVKSF 245 + FV++DGWS LV LV ++ Sbjct: 196 MLFVVMDGWSTLVHGLVLTY 215 >gi|172064928|ref|YP_001815640.1| Yop virulence translocation R [Burkholderia ambifaria MC40-6] gi|171997170|gb|ACB68087.1| Yop virulence translocation R [Burkholderia ambifaria MC40-6] Length = 218 Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 57/201 (28%), Positives = 119/201 (59%), Gaps = 4/201 (1%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108 +S+ P + ++ T + + ++V +LR +G+ VPPN+V+ +A+ ++ YVM+P ++++ Sbjct: 17 ISLIPFVAMVATSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAVLVSAYVMAPIGMQAMQ 76 Query: 109 ----MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 M P + + A EPF F++ + E++ F+ A K Sbjct: 77 TMQTMHRTPGSDTSLVVLDAFDAAKEPFRAFLKKHAHEREKRFFVRSATVVWPKDMAAKV 136 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + +L P+F ++E+ +F+IGFL+ + F+++D+++A ++MAMG+ + PT++++PFK Sbjct: 137 REDDLIVLAPAFTLTEMADAFKIGFLLYIAFIVVDLVIANVLMAMGLNQVQPTNVAIPFK 196 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FV++ GWS L+ LV ++ Sbjct: 197 LLLFVVMSGWSTLIHGLVMTY 217 >gi|53716433|ref|YP_106203.1| type III secretion system protein [Burkholderia mallei ATCC 23344] gi|53722640|ref|YP_111625.1| type III secretion system protein [Burkholderia pseudomallei K96243] gi|76819625|ref|YP_335835.1| type III secretion system protein [Burkholderia pseudomallei 1710b] gi|124381437|ref|YP_001025753.1| type III secretion system protein [Burkholderia mallei NCTC 10229] gi|126447834|ref|YP_001077838.1| type III secretion system protein [Burkholderia mallei NCTC 10247] gi|126457083|ref|YP_001076228.1| type III secretion system protein [Burkholderia pseudomallei 1106a] gi|134282115|ref|ZP_01768821.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 305] gi|167004563|ref|ZP_02270321.1| type III secretion inner membrane protein SctR [Burkholderia mallei PRL-20] gi|167724361|ref|ZP_02407597.1| type III secretion system protein [Burkholderia pseudomallei DM98] gi|167820506|ref|ZP_02452186.1| type III secretion system protein [Burkholderia pseudomallei 91] gi|167850341|ref|ZP_02475849.1| type III secretion system protein [Burkholderia pseudomallei B7210] gi|167907266|ref|ZP_02494471.1| type III secretion system protein [Burkholderia pseudomallei NCTC 13177] gi|167915628|ref|ZP_02502719.1| type III secretion system protein [Burkholderia pseudomallei 112] gi|238563924|ref|ZP_04610801.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia mallei GB8 horse 4] gi|242311808|ref|ZP_04810825.1| type III secretion inner membrane protein SctR [Burkholderia pseudomallei 1106b] gi|254176224|ref|ZP_04882882.1| type III secretion inner membrane protein SctR [Burkholderia mallei ATCC 10399] gi|254185081|ref|ZP_04891670.1| type III secretion inner membrane protein SctR [Burkholderia pseudomallei 1655] gi|254186948|ref|ZP_04893464.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei Pasteur 52237] gi|254194505|ref|ZP_04900937.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei S13] gi|254201084|ref|ZP_04907449.1| type III secretion inner membrane protein SctR [Burkholderia mallei FMH] gi|254205049|ref|ZP_04911402.1| type III secretion inner membrane protein SctR [Burkholderia mallei JHU] gi|254262389|ref|ZP_04953254.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 1710a] gi|254301371|ref|ZP_04968815.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 406e] gi|254359170|ref|ZP_04975442.1| type III secretion inner membrane protein SctR [Burkholderia mallei 2002721280] gi|52213054|emb|CAH39092.1| putative type III secretion protein [Burkholderia pseudomallei K96243] gi|52422403|gb|AAU45973.1| type III secretion inner membrane protein SctR [Burkholderia mallei ATCC 23344] gi|76584098|gb|ABA53572.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 1710b] gi|126230851|gb|ABN94264.1| type III secretion inner membrane protein SctR [Burkholderia pseudomallei 1106a] gi|126240688|gb|ABO03800.1| type III secretion inner membrane protein SctR [Burkholderia mallei NCTC 10247] gi|134246644|gb|EBA46732.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 305] gi|147748696|gb|EDK55771.1| type III secretion inner membrane protein SctR [Burkholderia mallei FMH] gi|147754635|gb|EDK61699.1| type III secretion inner membrane protein SctR [Burkholderia mallei JHU] gi|148028357|gb|EDK86317.1| type III secretion inner membrane protein SctR [Burkholderia mallei 2002721280] gi|157811552|gb|EDO88722.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 406e] gi|157934632|gb|EDO90302.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei Pasteur 52237] gi|160697266|gb|EDP87236.1| type III secretion inner membrane protein SctR [Burkholderia mallei ATCC 10399] gi|169651256|gb|EDS83949.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei S13] gi|184215673|gb|EDU12654.1| type III secretion inner membrane protein SctR [Burkholderia pseudomallei 1655] gi|238519668|gb|EEP83137.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia mallei GB8 horse 4] gi|242135047|gb|EES21450.1| type III secretion inner membrane protein SctR [Burkholderia pseudomallei 1106b] gi|243060178|gb|EES42364.1| type III secretion inner membrane protein SctR [Burkholderia mallei PRL-20] gi|254213391|gb|EET02776.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 1710a] gi|261826319|gb|ABM99126.2| type III secretion inner membrane protein SctR [Burkholderia mallei NCTC 10229] Length = 216 Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 121/200 (60%), Gaps = 2/200 (1%) Query: 48 ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107 ++S+ P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ Y+M+P + Sbjct: 16 VMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAPIGFAAQ 75 Query: 108 EMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165 + ++ Q T+ A EPF F+ ++RE++ F+ A + Sbjct: 76 QQLQGQALSPQPTQAMLQAFGAAKEPFRRFLAAHSREREKRFFLRSASVIWPQAAAAQLR 135 Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225 + +L P+F ++++ +F IGF++ + F+I+D+++A ++M+MGM + PT++++PFK+ Sbjct: 136 EDDLIVLAPAFTLAQMTDAFRIGFILYIAFIIVDLVIANVLMSMGMNQVQPTNVAIPFKL 195 Query: 226 IFFVLIDGWSLLVENLVKSF 245 + FV++DGWS LV LV ++ Sbjct: 196 MLFVVMDGWSTLVHGLVLTY 215 >gi|115360604|ref|YP_777741.1| type III secretion system protein [Burkholderia ambifaria AMMD] gi|170698360|ref|ZP_02889434.1| Yop virulence translocation R [Burkholderia ambifaria IOP40-10] gi|254253710|ref|ZP_04947027.1| Type III secretory pathway component EscR [Burkholderia dolosa AUO158] gi|115285932|gb|ABI91407.1| Yop virulence translocation R [Burkholderia ambifaria AMMD] gi|124898355|gb|EAY70198.1| Type III secretory pathway component EscR [Burkholderia dolosa AUO158] gi|170136699|gb|EDT04953.1| Yop virulence translocation R [Burkholderia ambifaria IOP40-10] Length = 218 Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 59/204 (28%), Positives = 122/204 (59%), Gaps = 10/204 (4%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108 +S+ P + ++ T + + ++V +LR +G+ VPPN+V+ +A+ ++ YVM+P ++++ Sbjct: 17 ISLIPFVAMVATSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAVLVSAYVMAPIGMQAMQ 76 Query: 109 ----MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH---SSHRNTDI 161 M P + + A EPF F++ + E++ F+ A I Sbjct: 77 TMQTMHRTPGSDTSLVVLDAFDAAKEPFRAFLKKHAHEREKRFFVRSATVVWPKDMAAKI 136 Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221 ++D I +L P+F ++E+ +F+IGFL+ + F+++D+++A ++MAMG+ + PT++++ Sbjct: 137 REDDLI---VLAPAFTLTEMADAFKIGFLLYIAFIVVDLVIANVLMAMGLNQVQPTNVAI 193 Query: 222 PFKVIFFVLIDGWSLLVENLVKSF 245 PFK++ FV++ GWS L+ LV ++ Sbjct: 194 PFKLLLFVVMSGWSTLIHGLVMTY 217 >gi|329943276|ref|ZP_08292050.1| hypothetical protein G5Q_0966 [Chlamydophila psittaci Cal10] gi|332287854|ref|YP_004422755.1| secretion and cellular translocation protein R [Chlamydophila psittaci 6BC] gi|84785894|gb|ABC62086.1| secretion and cellular translocation protein R [Chlamydophila psittaci] gi|313848426|emb|CBY17430.1| putative type III export protein [Chlamydophila psittaci RD1] gi|325506962|gb|ADZ18600.1| secretion and cellular translocation protein R [Chlamydophila psittaci 6BC] gi|328814823|gb|EGF84813.1| hypothetical protein G5Q_0966 [Chlamydophila psittaci Cal10] gi|328915116|gb|AEB55949.1| type III secretion inner membrane protein SctR [Chlamydophila psittaci 6BC] Length = 305 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 72/215 (33%), Positives = 126/215 (58%), Gaps = 17/215 (7%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-- 102 I L+++P L++++T + + II +LR +G+ PP+ V+ +AL ++ YVM PT Sbjct: 93 ILIFLALSPFLMMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGV 152 Query: 103 -----LDRSIEMGIQP--LMNNQITETT--AIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 + I+ P L + + ET A+ + EP F+ NT + + F ++ Sbjct: 153 AMYNDARKEIQGNAIPRDLFSAEGAETVFVALNKSKEPLRSFLIRNTPKSQIQSFYKISQ 212 Query: 154 SS---HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 + +T +D + I+IP+F++ +++ +FEIG LI LPF +ID++ A +++AM Sbjct: 213 KTFPPEIREHMTASDFV---IVIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQ 269 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMML P SISLP K++ V++DGW+LL++ L+ SF Sbjct: 270 MMMLSPLSISLPLKLLLVVMVDGWTLLLQGLMISF 304 >gi|167584013|ref|ZP_02376401.1| type III secretion system protein [Burkholderia ubonensis Bu] Length = 216 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 121/200 (60%), Gaps = 2/200 (1%) Query: 48 ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107 ++S+ P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ Y+M+P + Sbjct: 16 VMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAPIGFAAQ 75 Query: 108 EMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165 + ++ Q T+ A EPF F+ ++RE++ F+ A + Sbjct: 76 QQLQGQALSPQPTQAMLQAFGAAKEPFRQFLAAHSREREKRFFLRSASVIWPKAAAAQLR 135 Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225 + +L P+F ++++ +F IGF++ + F+I+D+++A ++M+MGM + PT++++PFK+ Sbjct: 136 DDDLIVLAPAFTLAQMTDAFRIGFILYIAFIIVDLVIANVLMSMGMNQVQPTNVAIPFKL 195 Query: 226 IFFVLIDGWSLLVENLVKSF 245 + FV++DGWS LV LV ++ Sbjct: 196 MLFVVMDGWSTLVHGLVLTY 215 >gi|118592626|ref|ZP_01550016.1| Type III secretory pathway, component EscR [Stappia aggregata IAM 12614] gi|118434677|gb|EAV41328.1| Type III secretory pathway, component EscR [Stappia aggregata IAM 12614] Length = 212 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 67/197 (34%), Positives = 116/197 (58%), Gaps = 4/197 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P + ++ T F + +V ++R +G+ +PPN+ + +LA+ ++ Y+M+P ++ + + Sbjct: 17 PFMAVVATSFIKIAVVLLLVRNALGVQQIPPNMALNALAIILSGYIMAPVFFQTFMIVQE 76 Query: 113 PLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK-NDHIEY 169 N N A P F+ + ++ LF A + D+ D Sbjct: 77 GNFNFGNLEGLQEAYNASKGPLIEFLDKHAEGRE-KLFFLKATAELWPADLAAMADENSI 135 Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229 +++P+F IS+LR +FEIGFL+ LPF+ ID++V+ I++AMGMMM+ P +ISLPFK+ FV Sbjct: 136 FVILPAFTISQLREAFEIGFLLYLPFVAIDLVVSNILLAMGMMMVSPLTISLPFKLFLFV 195 Query: 230 LIDGWSLLVENLVKSFI 246 ++DGWS L+ LVK++I Sbjct: 196 MVDGWSRLILGLVKTYI 212 >gi|62185507|ref|YP_220292.1| type III secretion system protein [Chlamydophila abortus S26/3] gi|62148574|emb|CAH64346.1| putative type III export protein [Chlamydophila abortus S26/3] Length = 305 Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 72/215 (33%), Positives = 126/215 (58%), Gaps = 17/215 (7%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-- 102 I L+++P L++++T + + II +LR +G+ PP+ V+ +AL ++ YVM PT Sbjct: 93 ILIFLALSPFLMMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGV 152 Query: 103 -----LDRSIEMGIQP--LMNNQITETT--AIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 + I+ P L + + ET A+ + EP F+ NT + + F ++ Sbjct: 153 AMYNDARKEIQGNAIPRDLFSAEGAETVFVALNKSKEPLRSFLIRNTPKSQIQSFYKISQ 212 Query: 154 SS---HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 + +T +D + I+IP+F++ +++ +FEIG LI LPF +ID++ A +++AM Sbjct: 213 KTFPPEIREHMTASDFV---IVIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQ 269 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMML P SISLP K++ V++DGW+LL++ L+ SF Sbjct: 270 MMMLSPLSISLPLKLLLVVMVDGWTLLLQGLMISF 304 >gi|126444918|ref|YP_001063272.1| type III secretion system protein [Burkholderia pseudomallei 668] gi|167743328|ref|ZP_02416102.1| type III secretion system protein [Burkholderia pseudomallei 14] gi|167898938|ref|ZP_02486339.1| type III secretion system protein [Burkholderia pseudomallei 7894] gi|167923471|ref|ZP_02510562.1| type III secretion system protein [Burkholderia pseudomallei BCC215] gi|217422186|ref|ZP_03453689.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 576] gi|237510472|ref|ZP_04523187.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei MSHR346] gi|126224409|gb|ABN87914.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 668] gi|217394417|gb|EEC34436.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 576] gi|235002677|gb|EEP52101.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei MSHR346] Length = 216 Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 121/200 (60%), Gaps = 2/200 (1%) Query: 48 ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107 ++S+ P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ Y+M+P + Sbjct: 16 VMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAPIGFAAQ 75 Query: 108 EMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165 + ++ Q T+ A EPF F+ ++RE++ F+ A + Sbjct: 76 QQLQGQALSPQPTQAMLQAFGAAKEPFRRFLAAHSREREKRFFLRSASVIWPQAAAAQLR 135 Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225 + +L P+F ++++ +F IGF++ + F+I+D+++A ++M+MGM + PT++++PFK+ Sbjct: 136 DDDLIVLAPAFTLAQMTDAFRIGFILYIAFIIVDLVIANVLMSMGMNQVQPTNVAIPFKL 195 Query: 226 IFFVLIDGWSLLVENLVKSF 245 + FV++DGWS LV LV ++ Sbjct: 196 MLFVVMDGWSTLVHGLVLTY 215 >gi|229588261|ref|YP_002870380.1| type III secretion system protein [Pseudomonas fluorescens SBW25] gi|229360127|emb|CAY46984.1| putative hairpin type III secretion protein [Pseudomonas fluorescens SBW25] Length = 217 Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 71/204 (34%), Positives = 124/204 (60%), Gaps = 10/204 (4%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT---LDR 105 LS+ P+LL++ T F + +IV I R +G+ VPP++ I +AL T ++M+P + Sbjct: 18 LSLMPMLLVVCTAFLKIVIVLMITRNAIGVQQVPPSMAINGIALATTLFIMAPVGYEIAE 77 Query: 106 SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDIT 162 S++ L N Q TA + + +P FM N L+ ++ + ++ Sbjct: 78 SVKALPLDLSNVQTLLQTANEAI-KPLRAFMLRNIDPDVLTHLLENTARLWPAQMAQEVQ 136 Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222 + D I +LIP+F++S+L+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P +ISLP Sbjct: 137 REDLI---LLIPAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTISLP 193 Query: 223 FKVIFFVLIDGWSLLVENLVKSFI 246 K++ FV++ GWS L+++L S++ Sbjct: 194 LKLLLFVMVSGWSRLLDSLFLSYL 217 >gi|17549081|ref|NP_522421.1| type III secretion system protein [Ralstonia solanacearum GMI1000] gi|2494568|sp|Q52488|HRCR_RALSO RecName: Full=Hypersensitivity response secretion protein hrcR gi|6066701|emb|CAB58247.1| HrpT protein [Ralstonia solanacearum] gi|17431332|emb|CAD18011.1| hrp conserved hrcr transmembrane protein [Ralstonia solanacearum GMI1000] gi|219566950|dbj|BAH04981.1| Hrp conserved transmembrane protein [Ralstonia solanacearum] gi|1097280|prf||2113360F hrpT gene Length = 217 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 123/204 (60%), Gaps = 10/204 (4%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108 +++ P ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ +VM+P +++ Sbjct: 16 IALLPFAAMVVTSYTKIVVVLGLLRNALGVQQVPPNMVLNGIAMIVSCFVMAPVGMEAMQ 75 Query: 109 MG---IQPLMNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDI 161 I IT+ + A +PF F+ +T ++ + FM A + + Sbjct: 76 RAHVQINAQGGTNITQVMPLLDAARDPFREFLNKHTNAREKAFFMRSAQQLWPPAKAAQL 135 Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221 +D I +L P+F ++EL +F IGFL+ L F++ID+++A ++MA+G+ + P+++++ Sbjct: 136 KDDDLI---VLAPAFTLTELTSAFRIGFLLYLAFIVIDLVIANLLMALGLSQVTPSNVAI 192 Query: 222 PFKVIFFVLIDGWSLLVENLVKSF 245 PFK++ FV++DGWS+L+ LV ++ Sbjct: 193 PFKLLLFVVMDGWSVLIHGLVNTY 216 >gi|304414276|ref|ZP_07395644.1| type III secretion system protein [Candidatus Regiella insecticola LSR1] gi|304283490|gb|EFL91886.1| type III secretion system protein [Candidatus Regiella insecticola LSR1] Length = 216 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 70/202 (34%), Positives = 116/202 (57%), Gaps = 22/202 (10%) Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT----LDRSIEMGI 111 ++M T F + +VFS+LR +G+ VPPN+ I AL +T ++M+P DR Sbjct: 24 MVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGFALVLTLFIMAPVGFDVYDR------ 77 Query: 112 QPLMNNQITETTA--IQRVAE----PFWVFMRNNTREKDLSLFMDMAHSS--HRNTDITK 163 L + + +Q + E P+ F+ NT + + F ++ + D K Sbjct: 78 --LQGEALPDDIGAFMQHIDEKALVPYRAFLVRNTSVEQTNFFAEIIKKDWPEKYRDKIK 135 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 D + I++P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPF Sbjct: 136 PDSL--LIMMPAFTVSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMVSPMTISLPF 193 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K++ F+++ GW LL+ LV S+ Sbjct: 194 KLLIFIMVGGWHLLLGQLVGSY 215 >gi|203284196|ref|YP_002221936.1| flagellar biosynthesis protein [Borrelia duttonii Ly] gi|203287735|ref|YP_002222750.1| flagellar biosynthesis protein [Borrelia recurrentis A1] gi|201083639|gb|ACH93230.1| flagellar biosynthesis protein [Borrelia duttonii Ly] gi|201084955|gb|ACH94529.1| flagellar biosynthesis protein [Borrelia recurrentis A1] Length = 254 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 80/198 (40%), Positives = 122/198 (61%), Gaps = 9/198 (4%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P L+++T F R IV +R + + PPN VI+ LALF+T + M PT + + Sbjct: 62 PAFLVLMTSFLRIAIVLDFIRRALSLQQSPPNQVIMGLALFLTLFTMWPTFNIIYKDAYL 121 Query: 113 PLMNNQITETTAIQRVAEPFWVFMR---NNTREKDLSLFMDMAHSSHRNTDITKN-DHIE 168 PL +++I R P FM +N+R +++ LFM ++ + KN + Sbjct: 122 PLRDSKINFNEFYDRGIAPLRNFMYKQMSNSRHEEIRLFMSISDYAK-----PKNFSEVP 176 Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 +LI SF++ EL+ +F++G LI LPF+IID+IVA ++MAMGM+MLPP ISLPFK+I F Sbjct: 177 THVLIASFILHELKVAFKMGILIFLPFIIIDIIVAAVLMAMGMIMLPPVIISLPFKLILF 236 Query: 229 VLIDGWSLLVENLVKSFI 246 V++DGW+L+ L+KSF+ Sbjct: 237 VMVDGWTLITSGLIKSFM 254 >gi|149926086|ref|ZP_01914349.1| Yop virulence translocation protein R [Limnobacter sp. MED105] gi|149825374|gb|EDM84585.1| Yop virulence translocation protein R [Limnobacter sp. MED105] Length = 217 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 64/202 (31%), Positives = 115/202 (56%), Gaps = 6/202 (2%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108 LS+ P++ + T F + V ILR +G+ VP N+V+ +++ MT VM L + + Sbjct: 17 LSVLPLVAVTATSFLKISAVLLILRNAIGVQQVPSNMVLYGISMVMTLLVMGSILTEAGQ 76 Query: 109 M----GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 G P+ ++ E+ I PF FM N L+ F + A + D + Sbjct: 77 RFAPDGKMPVSGTEVLES--INASVPPFKKFMLANVNPGYLNSFHETAQKFQKKYDAPEV 134 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + + +++P+F+ SEL +F IG + LPF+IID+ V++ +MA+GMMM+ P S+++P K Sbjct: 135 EKTDLFVVLPAFVASELAEAFRIGLYLYLPFVIIDLAVSSALMALGMMMVSPMSLTVPAK 194 Query: 225 VIFFVLIDGWSLLVENLVKSFI 246 ++ FV ++GW+ +++ LV S++ Sbjct: 195 IVLFVAVEGWAKVLQGLVNSYL 216 >gi|120609152|ref|YP_968830.1| type III secretion system protein [Acidovorax citrulli AAC00-1] gi|120587616|gb|ABM31056.1| Yop virulence translocation R [Acidovorax citrulli AAC00-1] gi|251825694|gb|ACT20915.1| type III secretion system structural protein [Acidovorax citrulli] gi|255047057|gb|AAW81014.2| HrcR [Acidovorax citrulli] Length = 220 Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 119/200 (59%), Gaps = 10/200 (5%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP-TLDRSIEMGI 111 P ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ YVM+P ++ S M + Sbjct: 23 PFAAMIVTSYTKVVVVLGLLRNALGVQQVPPNMVLNGIAIIISVYVMAPVAMEASDRMQM 82 Query: 112 QP---LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKND 165 P +N A EPF F+ + + + F+ A + R + +D Sbjct: 83 LPPSAQSSNTQQMLAAASAAREPFRKFLDKHADAAEKAFFLKSAQALWPEERARSLQADD 142 Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225 + +L P+F+++EL +F IGFL+ L F+I+++++A +++AMG+ + PT++++PFK+ Sbjct: 143 LV---VLAPAFLLTELTAAFRIGFLLYLAFIIVELVIANVLLAMGLSQVSPTNVAIPFKL 199 Query: 226 IFFVLIDGWSLLVENLVKSF 245 + FV++DGWS ++ LV ++ Sbjct: 200 LLFVVLDGWSQVMHGLVMTY 219 >gi|326315333|ref|YP_004233005.1| Yop virulence translocation R [Acidovorax avenae subsp. avenae ATCC 19860] gi|89111159|dbj|BAE80249.1| HrcR [Acidovorax avenae subsp. avenae] gi|89111192|dbj|BAE80281.1| HrcR [Acidovorax avenae subsp. avenae] gi|323372169|gb|ADX44438.1| Yop virulence translocation R [Acidovorax avenae subsp. avenae ATCC 19860] Length = 220 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 119/200 (59%), Gaps = 10/200 (5%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP-TLDRSIEMGI 111 P ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ YVM+P ++ S M + Sbjct: 23 PFAAMIVTSYTKVVVVLGLLRNALGVQQVPPNMVLNGIAIIISVYVMAPVAMEASDRMQM 82 Query: 112 QP---LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKND 165 P +N A EPF F+ + + + F+ A + R + +D Sbjct: 83 LPPSAQSSNTQQMLAAASAAREPFRKFLDKHADAAEKAFFLKSAQALWPEDRARSLQADD 142 Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225 + +L P+F+++EL +F IGFL+ L F+I+++++A +++AMG+ + PT++++PFK+ Sbjct: 143 LV---VLAPAFLLTELTAAFRIGFLLYLAFIIVELVIANVLLAMGLSQVSPTNVAIPFKL 199 Query: 226 IFFVLIDGWSLLVENLVKSF 245 + FV++DGWS ++ LV ++ Sbjct: 200 LLFVVLDGWSQVMHGLVMTY 219 >gi|89897883|ref|YP_514993.1| type III secretion system protein [Chlamydophila felis Fe/C-56] gi|89331255|dbj|BAE80848.1| type III secretion flagellar biosynthesis inner membrane protein [Chlamydophila felis Fe/C-56] Length = 305 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 71/215 (33%), Positives = 126/215 (58%), Gaps = 17/215 (7%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-- 102 I L+++P L++++T + + II +LR +G+ PP+ V+ +AL ++ YVM PT Sbjct: 93 ILIFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGV 152 Query: 103 -----LDRSIEMGIQP--LMNNQITETT--AIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 + I+ P L + + ET A+ + EP F+ NT + + F ++ Sbjct: 153 AMYNDARKEIQGNAIPRDLFSAEGAETVFVALNKSKEPLRSFLIRNTPKSQIQSFYKISQ 212 Query: 154 SS---HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 + +T +D + I++P+F++ +++ +FEIG LI LPF +ID++ A +++AM Sbjct: 213 KTFPPEIREHLTVSDFV---IIVPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQ 269 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMML P SISLP K++ V++DGW+LL++ L+ SF Sbjct: 270 MMMLSPLSISLPLKLLLVVMVDGWTLLLQGLMISF 304 >gi|300693806|ref|YP_003749779.1| hypersensitivity response secretion protein hrcr, type III secretion system [Ralstonia solanacearum PSI07] gi|299075843|emb|CBJ35152.1| Hypersensitivity response secretion protein hrcR, type III secretion system [Ralstonia solanacearum PSI07] Length = 217 Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 60/203 (29%), Positives = 123/203 (60%), Gaps = 8/203 (3%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108 +++ P ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ ++M+P +++ Sbjct: 16 IALLPFAAMVVTSYTKIVVVLGLLRNALGVQQVPPNMVLNGIAMIVSCFIMAPVGMEAMQ 75 Query: 109 MG---IQPLMNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHS--SHRNTDIT 162 I IT+ + A +PF F+ +T ++ + FM A + Sbjct: 76 RAHVQINAQGGTNITQVMPLLDAARDPFREFLNKHTNAREKAFFMRSAQQLWPPAKAALL 135 Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222 K+D + +L P+F ++EL +F IGFL+ L F++ID+++A ++MA+G+ + P+++++P Sbjct: 136 KDD--DLIVLAPAFTLTELTSAFRIGFLLYLAFIVIDLVIANLLMALGLSQVTPSNVAIP 193 Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245 FK++ FV++DGWS+LV LV ++ Sbjct: 194 FKLLLFVVMDGWSVLVHGLVNTY 216 >gi|207724580|ref|YP_002254977.1| hrp protein hrcr [Ralstonia solanacearum MolK2] gi|207739216|ref|YP_002257609.1| hrp protein hrcr [Ralstonia solanacearum IPO1609] gi|206589802|emb|CAQ36763.1| hrp conserved protein hrcr [Ralstonia solanacearum MolK2] gi|206592589|emb|CAQ59495.1| hrp conserved protein hrcr [Ralstonia solanacearum IPO1609] Length = 217 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 128/206 (62%), Gaps = 14/206 (6%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP----TLD 104 +++ P ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ ++M+P + Sbjct: 16 IALLPFAAMVVTSYTKIVVVLGLLRNALGVQQVPPNMVLNGIAMIVSCFIMAPVGMEAMQ 75 Query: 105 RS-IEMGIQPLMNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHS---SHRNT 159 R+ +++ Q N IT+ + A +PF F+ +T ++ + FM A + Sbjct: 76 RAHVQLNAQGGAN--ITQVMPLLDAARDPFREFLNKHTNAREKAFFMRSAQQLWPPAKAA 133 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + ++D I +L P+F ++EL +F IGFL+ L F++ID+++A ++MA+G+ + P+++ Sbjct: 134 LLKEDDLI---VLAPAFTLTELTSAFRIGFLLYLAFIVIDLVIANLLMALGLSQVTPSNV 190 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 ++PFK++ FV++DGWS+LV LV ++ Sbjct: 191 AIPFKLLLFVVMDGWSVLVHGLVNTY 216 >gi|285018283|ref|YP_003375994.1| xanthomonas secretion apparatus protein [Xanthomonas albilineans GPE PC73] gi|283473501|emb|CBA16004.1| probable xanthomonas secretion apparatus protein [Xanthomonas albilineans] Length = 231 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 68/219 (31%), Positives = 126/219 (57%), Gaps = 20/219 (9%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 + ++++ P L TCF +F +VF +LR +GM VP N+V+ S+AL + +VM P + Sbjct: 11 ALIAVMALIPFLFASGTCFLKFSVVFVLLRNAIGMQQVPSNMVLNSIALMLAAFVMQPVI 70 Query: 104 DRSIEMGIQPLMNNQITETTAI----QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 + + +Q+T + V P+ ++ +K+L F S+ +NT Sbjct: 71 TSTFHAFQE---TDQVTSMDEVGPYLTTVLTPYRQYLAKYA-DKELVEFFQRVPSTVQNT 126 Query: 160 DIT-----KNDHIEYRI-------LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 T N +++ L+P++ ++ELR +F IGF + LPF++ID+IV+ +++ Sbjct: 127 PTTPGQGTANQSAIHQVQQPSLYALLPAYGLTELRDAFRIGFYLYLPFVVIDLIVSNVLL 186 Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 A+GMMM+ P +IS+P K+I FV +DGW+L+ ++L++ ++ Sbjct: 187 ALGMMMMSPVTISMPIKLILFVALDGWTLVSKDLMEPYM 225 >gi|191166033|ref|ZP_03027869.1| type III secretion apparatus protein EpaP [Escherichia coli B7A] gi|190903981|gb|EDV63694.1| type III secretion apparatus protein EpaP [Escherichia coli B7A] Length = 221 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 124/214 (57%), Gaps = 20/214 (9%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 I ++ ++ P ++ TCF +F IVF I+R +G+ VP N+ + +AL ++ +VM P Sbjct: 9 AILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMP-- 66 Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAE----------PFWVFMRNNTREKDLSLF--MDM 151 +G + + NN E + VA + ++ ++ + +S F + Sbjct: 67 -----VG-KEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKHSEPELVSFFEKIQK 120 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 +SS N +I +D+I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GM Sbjct: 121 VNSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGM 180 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MM+ P +IS P K+I FV +DGW++L + L+ + Sbjct: 181 MMMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214 >gi|167567196|ref|ZP_02360112.1| flagellar biosynthesis protein FliP [Burkholderia oklahomensis EO147] gi|167574620|ref|ZP_02367494.1| flagellar biosynthesis protein FliP [Burkholderia oklahomensis C6786] Length = 249 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/220 (36%), Positives = 126/220 (57%), Gaps = 7/220 (3%) Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84 + + +P+D S+ T I+ T+L + P+L I+ T F RF+IV ++LR +G+ P Sbjct: 33 ESLGLPSDYSVKTQILLFM---TLLGLLPMLAIVTTSFLRFVIVLALLRQALGLQQGLPT 89 Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144 V+ +AL +T VM P I+P ++IT A+ R P FM T + Sbjct: 90 RVVAGVALLLTLLVMRPVGLDVWRNAIEPYDLDKITFREAVDRAQLPLSRFMLAQTNKAS 149 Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204 L +A D+ + + + + +FM+SEL+ +F+IG ++ LPFLIID++VA+ Sbjct: 150 LEQIARLAG----EKDLARPEDHAFVVKAAAFMLSELKTAFQIGSMLFLPFLIIDLVVAS 205 Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 +MAMGMMML P ISLP K++ FVL+DGW+L V+ L S Sbjct: 206 TLMAMGMMMLSPLVISLPLKLLLFVLVDGWTLTVDTLATS 245 >gi|83747860|ref|ZP_00944893.1| HrcR [Ralstonia solanacearum UW551] gi|83725507|gb|EAP72652.1| HrcR [Ralstonia solanacearum UW551] Length = 252 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 128/206 (62%), Gaps = 14/206 (6%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP----TLD 104 +++ P ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ ++M+P + Sbjct: 51 IALLPFAAMVVTSYTKIVVVLGLLRNALGVQQVPPNMVLNGIAMIVSCFIMAPVGMEAMQ 110 Query: 105 RS-IEMGIQPLMNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHS---SHRNT 159 R+ +++ Q N IT+ + A +PF F+ +T ++ + FM A + Sbjct: 111 RAHVQLNAQGGAN--ITQVMPLLDAARDPFREFLNKHTNAREKAFFMRSAQQLWPPAKAA 168 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + ++D I +L P+F ++EL +F IGFL+ L F++ID+++A ++MA+G+ + P+++ Sbjct: 169 LLKEDDLI---VLAPAFTLTELTSAFRIGFLLYLAFIVIDLVIANLLMALGLSQVTPSNV 225 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 ++PFK++ FV++DGWS+LV LV ++ Sbjct: 226 AIPFKLLLFVVMDGWSVLVHGLVNTY 251 >gi|182440971|dbj|BAG24096.1| HrcR [Pseudomonas cichorii] Length = 193 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 67/202 (33%), Positives = 122/202 (60%), Gaps = 20/202 (9%) Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMG----- 110 +I+ T F + +V I R +G+ PPN+ + +AL T ++M+P + EMG Sbjct: 1 MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFN---EMGQRVKK 57 Query: 111 IQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR------NTDITKN 164 + ++N +A + V EP +FM TR D + + ++ R ++ +++ Sbjct: 58 LPERLDNFAAMESAGKHVIEPLRLFM---TRNIDPDIQTHLLENTQRMWPKEMSSQASRD 114 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 D + +++P+F++SEL+ F+IGFLI +PF++ID+IV+ I++A+GM M+ P +ISLP K Sbjct: 115 DLL---LVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLK 171 Query: 225 VIFFVLIDGWSLLVENLVKSFI 246 ++ FVL+DGW+ L++ L S++ Sbjct: 172 ILLFVLVDGWTRLLDGLFYSYM 193 >gi|85060062|ref|YP_455764.1| surface presentation of antigens protein SpaP [Sodalis glossinidius str. 'morsitans'] gi|45504775|gb|AAS66865.1| SpaP [Sodalis glossinidius] gi|84780582|dbj|BAE75359.1| type III secretion apparatus SpaP [Sodalis glossinidius str. 'morsitans'] Length = 233 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 63/224 (28%), Positives = 129/224 (57%), Gaps = 12/224 (5%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 +++P D+ + GI + ++ P ++ TC+ +F IVF ++R +G+ VP NL Sbjct: 5 LDLPNDMGL-------IGILALATLLPFIIASGTCYIKFSIVFVMVRNALGLQQVPSNLT 57 Query: 87 IISLALFMTFYVMSP-TLDRSIEMGIQPL-MNNQITETTAIQRVAEPFWVFMRNNTREKD 144 + +AL + ++M P D QP+ + + + ++ E + +++ + Sbjct: 58 LNGIALMLAMFIMGPIAGDAYNAYQEQPVALGSAASVLEFLENSMESYRHYLQKYADPR- 116 Query: 145 LSLFMDMAHSSHRNT-DITKNDHIEYRI-LIPSFMISELRRSFEIGFLIILPFLIIDMIV 202 L+ F D AH D + H + L+P++ +SE++ SF IGF + LPF+++D+++ Sbjct: 117 LTEFFDRAHGGGGAAHDAPASGHAPSMLALLPAYALSEIKDSFRIGFYLYLPFVVVDLLI 176 Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +++++A+GMMM+ P ++S+P K++ FV++DGW+LL + LV ++ Sbjct: 177 SSVLLALGMMMMSPITLSVPIKLVLFVMLDGWTLLSQGLVLQYL 220 >gi|237800781|ref|ZP_04589242.1| type III secretion system protein YscR [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023639|gb|EGI03696.1| type III secretion system protein YscR [Pseudomonas syringae pv. oryzae str. 1_6] Length = 218 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 68/208 (32%), Positives = 116/208 (55%), Gaps = 12/208 (5%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + + + P+ ++ +T F + +V ++R +G+ PPNLV+ +AL ++ YV +P + Sbjct: 14 VVATIGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIALILSVYVTTPLIG 73 Query: 105 ---RSIEMGIQPLMN-NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH---SSHR 157 R +E L N Q+ E + R P + E + F+ S Sbjct: 74 DMYRQVEGRDLSLQNVQQLEELGSALR--PPLQAHLSKFANESERGFFVQATETIWSPEA 131 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 D+ +D + +LIP+F+ SEL R+FEIGFL+ +PFL++D++V+ ++MAMGM M+ PT Sbjct: 132 RADLRDDDLV---VLIPAFVSSELTRAFEIGFLLYIPFLVVDLLVSNVLMAMGMSMVSPT 188 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 IS+P K+ FV + GWS L+ L+ S+ Sbjct: 189 LISIPLKIFLFVALSGWSRLMHGLILSY 216 >gi|299069226|emb|CBJ40486.1| Hypersensitivity response secretion protein hrcR, type III secretion system [Ralstonia solanacearum CMR15] Length = 217 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 60/204 (29%), Positives = 121/204 (59%), Gaps = 10/204 (4%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108 +++ P ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ +VM+P +++ Sbjct: 16 IALLPFAAMVVTSYTKIVVVLGLLRNALGVQQVPPNMVLNGIAMIVSCFVMAPVGMEAMQ 75 Query: 109 MGIQPLMNNQITETTAI----QRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDI 161 L T T + +PF F+ +T ++ + FM A + + Sbjct: 76 RAHVQLNAQGGTTITQVMPLLDAARDPFREFLNKHTNPREKAFFMRSAQQLWPPAKAAQL 135 Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221 +D I +L P+F ++EL +F IGFL+ L F++ID+++A ++MA+G+ + P+++++ Sbjct: 136 KDDDLI---VLAPAFTLTELTSAFRIGFLLYLVFIVIDLVIANLLMALGLSQVTPSNVAI 192 Query: 222 PFKVIFFVLIDGWSLLVENLVKSF 245 PFK++ FV++DGWS+LV LV ++ Sbjct: 193 PFKLLLFVVMDGWSVLVHGLVNTY 216 >gi|218679632|ref|ZP_03527529.1| flagellar biosynthesis protein FliP [Rhizobium etli CIAT 894] Length = 105 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 58/100 (58%), Positives = 77/100 (77%), Gaps = 1/100 (1%) Query: 1 MIRY-CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 MIR F A +V PEL A+ D++N+P D S++ WI+RTFG+ T+LS+AP +LIMV Sbjct: 1 MIRLIVFLAAMMVVPELAVAQQLPTDLLNVPVDGSVAAWIIRTFGLLTVLSVAPGILIMV 60 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 T FPRFII FSILR+GMG+ S P N++++SL+LFMTFYVM Sbjct: 61 TSFPRFIIAFSILRSGMGLSSTPSNMILLSLSLFMTFYVM 100 >gi|193063605|ref|ZP_03044694.1| type III secretion apparatus protein EpaP [Escherichia coli E22] gi|193071824|ref|ZP_03052713.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli E110019] gi|194426470|ref|ZP_03059025.1| fliP family protein [Escherichia coli B171] gi|209920317|ref|YP_002294401.1| surface presentation of antigens protein SpaP [Escherichia coli SE11] gi|218555411|ref|YP_002388324.1| surface presentation of antigens protein SpaP [Escherichia coli IAI1] gi|218706362|ref|YP_002413881.1| surface presentation of antigens protein SpaP [Escherichia coli UMN026] gi|260845525|ref|YP_003223303.1| type III secretion protein EpaP [Escherichia coli O103:H2 str. 12009] gi|260856977|ref|YP_003230868.1| type III secretion protein EpaP [Escherichia coli O26:H11 str. 11368] gi|260869540|ref|YP_003235942.1| type III secretion protein EpaP [Escherichia coli O111:H- str. 11128] gi|293406354|ref|ZP_06650280.1| surface presentation antigens protein SpaP [Escherichia coli FVEC1412] gi|293412212|ref|ZP_06654935.1| YscR/HrcR family type III secretion apparatus protein [Escherichia coli B354] gi|293449185|ref|ZP_06663606.1| YscR/HrcR family type III secretion apparatus protein [Escherichia coli B088] gi|298382089|ref|ZP_06991686.1| spaP protein [Escherichia coli FVEC1302] gi|300815709|ref|ZP_07095933.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 107-1] gi|300820661|ref|ZP_07100812.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 119-7] gi|300898067|ref|ZP_07116435.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 198-1] gi|307310520|ref|ZP_07590168.1| Yop virulence translocation R [Escherichia coli W] gi|309793922|ref|ZP_07688347.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 145-7] gi|331664426|ref|ZP_08365332.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli TA143] gi|331678847|ref|ZP_08379521.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli H591] gi|14422435|dbj|BAB60842.1| epaP [Escherichia coli] gi|62085063|gb|AAX62928.1| putative type III secretion apparatus integral membrane protein component [Escherichia coli] gi|192930882|gb|EDV83487.1| type III secretion apparatus protein EpaP [Escherichia coli E22] gi|192954864|gb|EDV85378.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli E110019] gi|194415778|gb|EDX32045.1| fliP family protein [Escherichia coli B171] gi|209913576|dbj|BAG78650.1| putative type III secretion protein [Escherichia coli SE11] gi|218362179|emb|CAQ99796.1| putative type III secretion system protein EpaP [Escherichia coli IAI1] gi|218433459|emb|CAR14361.1| putative type III secretion system protein EpaP [Escherichia coli UMN026] gi|257755626|dbj|BAI27128.1| type III secretion protein EpaP [Escherichia coli O26:H11 str. 11368] gi|257760672|dbj|BAI32169.1| type III secretion protein EpaP [Escherichia coli O103:H2 str. 12009] gi|257765896|dbj|BAI37391.1| type III secretion protein EpaP [Escherichia coli O111:H- str. 11128] gi|291322275|gb|EFE61704.1| YscR/HrcR family type III secretion apparatus protein [Escherichia coli B088] gi|291426360|gb|EFE99392.1| surface presentation antigens protein SpaP [Escherichia coli FVEC1412] gi|291468983|gb|EFF11474.1| YscR/HrcR family type III secretion apparatus protein [Escherichia coli B354] gi|298277229|gb|EFI18745.1| spaP protein [Escherichia coli FVEC1302] gi|300358205|gb|EFJ74075.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 198-1] gi|300526925|gb|EFK47994.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 119-7] gi|300531638|gb|EFK52700.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 107-1] gi|306909415|gb|EFN39910.1| Yop virulence translocation R [Escherichia coli W] gi|308122329|gb|EFO59591.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 145-7] gi|315062167|gb|ADT76494.1| type III secretion system protein [Escherichia coli W] gi|323153851|gb|EFZ40087.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli EPECa14] gi|323180305|gb|EFZ65857.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli 1180] gi|323377249|gb|ADX49517.1| Yop virulence translocation R [Escherichia coli KO11] gi|331058357|gb|EGI30338.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli TA143] gi|331073677|gb|EGI44998.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli H591] Length = 221 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 123/214 (57%), Gaps = 20/214 (9%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 I ++ ++ P ++ TCF +F IVF I+R +G+ VP N+ + +AL ++ +VM P Sbjct: 9 AILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMP-- 66 Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAE----------PFWVFMRNNTREKDLSLF--MDM 151 +G + + NN E + VA + ++ + + +S F + Sbjct: 67 -----VG-KEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQK 120 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 +SS N +I +D+I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GM Sbjct: 121 VNSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGM 180 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MM+ P +IS P K+I FV +DGW++L + L+ + Sbjct: 181 MMMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214 >gi|300697461|ref|YP_003748122.1| Hypersensitivity response secretion protein hrcR, type III secretion system [Ralstonia solanacearum CFBP2957] gi|299074185|emb|CBJ53730.1| Hypersensitivity response secretion protein hrcR, type III secretion system [Ralstonia solanacearum CFBP2957] Length = 217 Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 127/206 (61%), Gaps = 14/206 (6%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP----TLD 104 +++ P ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ ++M+P + Sbjct: 16 IALLPFAAMVVTSYTKIVVVLGLLRNALGVQQVPPNMVLNGIAMIVSCFIMAPVGMEAMQ 75 Query: 105 RS-IEMGIQPLMNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHS---SHRNT 159 R+ +++ Q IT+ + A +PF F+ +T ++ + FM A + Sbjct: 76 RAHVQLNAQG--GATITQVMPLLDAARDPFREFLNKHTNAREKAFFMRSAQQLWPPAKAA 133 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + ++D I +L P+F ++EL +F IGFL+ L F++ID+++A ++MA+G+ + P+++ Sbjct: 134 LLKEDDLI---VLAPAFTLTELTSAFRIGFLLYLAFIVIDLVIANLLMALGLSQVTPSNV 190 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 ++PFK++ FV++DGWS+LV LV ++ Sbjct: 191 AIPFKLLLFVVMDGWSVLVHGLVNTY 216 >gi|157159039|ref|YP_001464197.1| surface presentation of antigens protein SpaP [Escherichia coli E24377A] gi|157081069|gb|ABV20777.1| type III secretion apparatus protein EpaP [Escherichia coli E24377A] Length = 221 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 123/214 (57%), Gaps = 20/214 (9%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 I ++ ++ P ++ TCF +F IVF I+R +G+ VP N+ + +AL ++ +VM P Sbjct: 9 AILSLFTLLPFIIASGTCFIKFSIVFVIVRKALGLQQVPSNMTLNGVALLLSMFVMMP-- 66 Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAE----------PFWVFMRNNTREKDLSLF--MDM 151 +G + + NN E + VA + ++ + + +S F + Sbjct: 67 -----VG-KEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQK 120 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 +SS N +I +D+I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GM Sbjct: 121 VNSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGM 180 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MM+ P +IS P K+I FV +DGW++L + L+ + Sbjct: 181 MMMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214 >gi|298487104|ref|ZP_07005154.1| type III secretion system inner membrane protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158347|gb|EFH99417.1| type III secretion system inner membrane protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 218 Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 67/208 (32%), Positives = 116/208 (55%), Gaps = 12/208 (5%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + + + P+ ++ +T F + +V ++R +G+ PPNLV+ +AL ++ YV +P + Sbjct: 14 VVATIGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIALILSVYVTTPLIG 73 Query: 105 ---RSIEMGIQPLMN-NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH---SSHR 157 R ++ L N Q+ E + R P + E + F+ S Sbjct: 74 DMYREVQGRDLSLQNVQQLEELGSALR--PPLQAHLSKFANESERGFFVQATETIWSPEA 131 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 D+ +D + +LIP+F+ SEL R+FEIGFL+ +PFL++D++V+ ++MAMGM M+ PT Sbjct: 132 RADLCDDDLV---VLIPAFVSSELTRAFEIGFLLYIPFLVVDLLVSNVLMAMGMSMVSPT 188 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 IS+P K+ FV + GWS L+ L+ S+ Sbjct: 189 LISIPLKIFLFVALSGWSRLMHGLILSY 216 >gi|330953282|gb|EGH53542.1| type III secretion system protein YscR [Pseudomonas syringae Cit 7] Length = 218 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 67/208 (32%), Positives = 116/208 (55%), Gaps = 12/208 (5%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + + + P+ ++ +T F + +V ++R +G+ PPNLV+ +AL ++ YV +P + Sbjct: 14 VVATIGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIALILSVYVTTPLIG 73 Query: 105 ---RSIEMGIQPLMN-NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH---SSHR 157 R ++ L N Q+ E + R P + E + F+ S Sbjct: 74 DMYRQVQGRDLSLQNVQQLEELGSALR--PPLQAHLSKFANESERGFFVQATETIWSPEA 131 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 D+ +D + +LIP+F+ SEL R+FEIGFL+ +PFL++D++V+ ++MAMGM M+ PT Sbjct: 132 RADLRDDDLV---VLIPAFVSSELTRAFEIGFLLYIPFLVVDLLVSNVLMAMGMSMVSPT 188 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 IS+P K+ FV + GWS L+ L+ S+ Sbjct: 189 LISIPLKIFLFVALSGWSRLMHGLILSY 216 >gi|257487956|ref|ZP_05641997.1| type III secretion system protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289646626|ref|ZP_06477969.1| type III secretion system protein [Pseudomonas syringae pv. aesculi str. 2250] gi|320324517|gb|EFW80594.1| type III secretion system protein [Pseudomonas syringae pv. glycinea str. B076] gi|320328890|gb|EFW84889.1| type III secretion system protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330879022|gb|EGH13171.1| type III secretion system protein YscR [Pseudomonas syringae pv. glycinea str. race 4] gi|331008645|gb|EGH88701.1| type III secretion system protein YscR [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 218 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 67/208 (32%), Positives = 116/208 (55%), Gaps = 12/208 (5%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + + + P+ ++ +T F + +V ++R +G+ PPNLV+ +AL ++ YV +P + Sbjct: 14 VVATIGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIALILSVYVTTPLIG 73 Query: 105 ---RSIEMGIQPLMN-NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH---SSHR 157 R ++ L N Q+ E + R P + E + F+ S Sbjct: 74 DMYREVQGRDLSLQNVQQLEELGSALR--PPLQAHLSKFANESERGFFVQATETIWSPEA 131 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 D+ +D + +LIP+F+ SEL R+FEIGFL+ +PFL++D++V+ ++MAMGM M+ PT Sbjct: 132 RADLRDDDLV---VLIPAFVSSELTRAFEIGFLLYIPFLVVDLLVSNVLMAMGMSMVSPT 188 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 IS+P K+ FV + GWS L+ L+ S+ Sbjct: 189 LISIPLKIFLFVALSGWSRLMHGLILSY 216 >gi|330876194|gb|EGH10343.1| type III secretion system protein YscR [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330963708|gb|EGH63968.1| type III secretion system protein YscR [Pseudomonas syringae pv. actinidiae str. M302091] Length = 218 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 67/208 (32%), Positives = 116/208 (55%), Gaps = 12/208 (5%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + + + P+ ++ +T F + +V ++R +G+ PPNLV+ +AL ++ YV +P + Sbjct: 14 VVATIGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIALILSVYVTTPLIG 73 Query: 105 ---RSIEMGIQPLMN-NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH---SSHR 157 R ++ L N Q+ E + R P + E + F+ S Sbjct: 74 DMYREVQGRDLSLQNVQQLEELGSALR--PPLQAHLSKFANESERGFFVQATETIWSPEA 131 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 D+ +D + +LIP+F+ SEL R+FEIGFL+ +PFL++D++V+ ++MAMGM M+ PT Sbjct: 132 RADLRDDDLV---VLIPAFVSSELTRAFEIGFLLYIPFLVVDLLVSNVLMAMGMSMVSPT 188 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 IS+P K+ FV + GWS L+ L+ S+ Sbjct: 189 LISIPLKIFLFVALSGWSRLMHGLILSY 216 >gi|15803389|ref|NP_289422.1| surface presentation of antigens protein SpaP [Escherichia coli O157:H7 EDL933] gi|15832979|ref|NP_311752.1| surface presentation of antigens protein SpaP [Escherichia coli O157:H7 str. Sakai] gi|168747669|ref|ZP_02772691.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7 str. EC4113] gi|168753791|ref|ZP_02778798.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7 str. EC4401] gi|168759981|ref|ZP_02784988.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7 str. EC4501] gi|168766846|ref|ZP_02791853.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7 str. EC4486] gi|168775730|ref|ZP_02800737.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7 str. EC4196] gi|168778867|ref|ZP_02803874.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7 str. EC4076] gi|168785699|ref|ZP_02810706.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7 str. EC869] gi|168799986|ref|ZP_02824993.1| fliP family protein [Escherichia coli O157:H7 str. EC508] gi|195936471|ref|ZP_03081853.1| surface presentation of antigens protein SpaP [Escherichia coli O157:H7 str. EC4024] gi|208806889|ref|ZP_03249226.1| fliP family protein [Escherichia coli O157:H7 str. EC4206] gi|208812978|ref|ZP_03254307.1| fliP family protein [Escherichia coli O157:H7 str. EC4045] gi|208820470|ref|ZP_03260790.1| fliP family protein [Escherichia coli O157:H7 str. EC4042] gi|209399259|ref|YP_002272331.1| fliP family protein [Escherichia coli O157:H7 str. EC4115] gi|217326775|ref|ZP_03442858.1| fliP family protein [Escherichia coli O157:H7 str. TW14588] gi|254794806|ref|YP_003079643.1| surface presentation of antigens protein SpaP [Escherichia coli O157:H7 str. TW14359] gi|261226166|ref|ZP_05940447.1| putative integral membrane protein-component of typeIII secretion apparatus [Escherichia coli O157:H7 str. FRIK2000] gi|261256580|ref|ZP_05949113.1| putative integral membrane protein-component of typeIII secretion apparatus [Escherichia coli O157:H7 str. FRIK966] gi|12517367|gb|AAG57981.1|AE005515_3 putative integral membrane protein-component of typeIII secretion apparatus [Escherichia coli O157:H7 str. EDL933] gi|13363197|dbj|BAB37148.1| type III secretion protein EpaP [Escherichia coli O157:H7 str. Sakai] gi|187768768|gb|EDU32612.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7 str. EC4196] gi|188017894|gb|EDU56016.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7 str. EC4113] gi|189003561|gb|EDU72547.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7 str. EC4076] gi|189358717|gb|EDU77136.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7 str. EC4401] gi|189363672|gb|EDU82091.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7 str. EC4486] gi|189369400|gb|EDU87816.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7 str. EC4501] gi|189373795|gb|EDU92211.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7 str. EC869] gi|189377645|gb|EDU96061.1| fliP family protein [Escherichia coli O157:H7 str. EC508] gi|208726690|gb|EDZ76291.1| fliP family protein [Escherichia coli O157:H7 str. EC4206] gi|208734255|gb|EDZ82942.1| fliP family protein [Escherichia coli O157:H7 str. EC4045] gi|208740593|gb|EDZ88275.1| fliP family protein [Escherichia coli O157:H7 str. EC4042] gi|209160659|gb|ACI38092.1| fliP family protein [Escherichia coli O157:H7 str. EC4115] gi|217319142|gb|EEC27567.1| fliP family protein [Escherichia coli O157:H7 str. TW14588] gi|254594206|gb|ACT73567.1| putative integral membrane protein-component of typeIII secretion apparatus [Escherichia coli O157:H7 str. TW14359] Length = 221 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 122/207 (58%), Gaps = 6/207 (2%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 I ++ ++ P ++ TCF +F IVF I+R +G+ VP N+ + +AL ++ +VM P + Sbjct: 9 AILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMP-V 67 Query: 104 DRSIEMGIQP---LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF--MDMAHSSHRN 158 + I Q NN + ++ + ++ + + +S F + +SS N Sbjct: 68 GKEIYYNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQKVNSSEDN 127 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 +I +D+I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMMM+ P + Sbjct: 128 EEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMMMMSPVT 187 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 IS P K+I FV +DGW++L + L+ + Sbjct: 188 ISTPIKLILFVAMDGWTMLSKGLILQY 214 >gi|238755993|ref|ZP_04617318.1| Surface presentation of antigens protein spaP [Yersinia ruckeri ATCC 29473] gi|238705782|gb|EEP98174.1| Surface presentation of antigens protein spaP [Yersinia ruckeri ATCC 29473] Length = 218 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 64/211 (30%), Positives = 120/211 (56%), Gaps = 14/211 (6%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 I + ++ P ++ TCF + IV ++R MG+ +P N+ + +AL ++ +VM P + Sbjct: 9 AIVALTTLLPFIIAAGTCFLKISIVLIMVRNAMGVQQIPSNIALNGIALLLSLFVMMPVI 68 Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAE-------PFWVFMRNNTREKDLSLFMDMAHS-S 155 + I + Q E T + V + +++ + + LS F + S Sbjct: 69 ND-----INDYVREQKVEMTDVDSVNRFVDGGLGGYKSYLKKYSDPELLSFFESVQRGRS 123 Query: 156 HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215 D+ K + + +L P++ +SE++ +FEIGF I LPF++ID+++++I++A+GMMM+ Sbjct: 124 EHEIDVEKEEVTLFSLL-PAYALSEIKSAFEIGFYIYLPFVVIDLVISSILLALGMMMMS 182 Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 P +IS+P K+I FV +DGW+L+ + LV +I Sbjct: 183 PVTISVPIKLILFVAMDGWALISKGLVMQYI 213 >gi|171319016|ref|ZP_02908143.1| Yop virulence translocation R [Burkholderia ambifaria MEX-5] gi|171095771|gb|EDT40724.1| Yop virulence translocation R [Burkholderia ambifaria MEX-5] Length = 213 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 66/198 (33%), Positives = 111/198 (56%), Gaps = 2/198 (1%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDR-SI 107 L I P ++VT + + IVF++++ +G+ P LV +LAL +T +VM+P L S Sbjct: 16 LGIVPAACVLVTSYTKISIVFALVKNAIGIQQTPSALVTNALALIVTMFVMAPVLTEVSR 75 Query: 108 EMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHI 167 M P E + V +P FM+ + ++ + + A Sbjct: 76 NMASGPSREQSRIEWVS-NAVGKPVGEFMKKHVDPREQARLIASAERIWPEAMAKAAKPD 134 Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227 ++ IL P+F ISE+ +F+IGF++ L F+ ID+IVA I+MAMGM+M PT +S+P K++ Sbjct: 135 DFFILAPAFAISEITAAFKIGFVLYLAFVAIDLIVANILMAMGMIMFSPTIVSIPLKIVL 194 Query: 228 FVLIDGWSLLVENLVKSF 245 F + DGWS L+++L+ ++ Sbjct: 195 FAMADGWSRLIQSLILTY 212 >gi|331674342|ref|ZP_08375102.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli TA280] gi|331068436|gb|EGI39831.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli TA280] Length = 221 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 62/214 (28%), Positives = 121/214 (56%), Gaps = 20/214 (9%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 I ++ ++ P ++ TCF +F IVF I+R +G+ VP N+ + +AL ++ +VM P Sbjct: 9 AILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMPVG 68 Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAE----------PFWVFMRNNTREKDLSLF--MDM 151 + + NN E + VA + ++ + + +S F + Sbjct: 69 --------KEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQK 120 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 +SS N +I +++I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GM Sbjct: 121 GNSSEDNEEIIDDENISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGM 180 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MM+ P +IS P K+I FV +DGW++L + L+ + Sbjct: 181 MMMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214 >gi|34498079|ref|NP_902294.1| surface presentation of antigens protein SpaP [Chromobacterium violaceum ATCC 12472] gi|34103934|gb|AAQ60294.1| surface presentation of antigens; secretory proteins [Chromobacterium violaceum ATCC 12472] Length = 220 Score = 118 bits (295), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 61/201 (30%), Positives = 113/201 (56%), Gaps = 9/201 (4%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P L+ TCF +F IVF ++R +G+ VP N+ + +AL ++ +VM P ++ G Sbjct: 18 PFLIASGTCFVKFSIVFVMVRNALGLQQVPSNMTLNGIALMLSMFVMLPVAQQA--YGYY 75 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRN---NTREKDLSLFMDMAHSSHRNTDITK----ND 165 T A+ E R + +L+ F + A S D + +D Sbjct: 76 QEERVSFTSVEAVNNFVENGLDGYRGYLQKYSDPELTRFFEKAQSQRSERDGGEAAAPDD 135 Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225 L+P++ +SE++ +F+IGF + LPF+++D++++++++A+GMMM+ P +IS+P K+ Sbjct: 136 KPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVISSVLLALGMMMMSPVTISVPIKL 195 Query: 226 IFFVLIDGWSLLVENLVKSFI 246 + FV +DGW+LL + LV ++ Sbjct: 196 VLFVALDGWTLLSKGLVLQYL 216 >gi|126442614|ref|YP_001061222.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei 668] gi|134280834|ref|ZP_01767544.1| FliP family [Burkholderia pseudomallei 305] gi|167725906|ref|ZP_02409142.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei DM98] gi|167905065|ref|ZP_02492270.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei NCTC 13177] gi|254182913|ref|ZP_04889506.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 1655] gi|254299708|ref|ZP_04967157.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 406e] gi|125657197|gb|ABN48685.1| FliP [Burkholderia pseudomallei] gi|126222105|gb|ABN85610.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 668] gi|134247856|gb|EBA47940.1| FliP family [Burkholderia pseudomallei 305] gi|157809347|gb|EDO86517.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 406e] gi|184213447|gb|EDU10490.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 1655] Length = 255 Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 78/192 (40%), Positives = 111/192 (57%), Gaps = 4/192 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P L I++T F RF IV ++LR +G+ P VI +AL +T VM P I+ Sbjct: 64 PALAIVMTSFLRFAIVLALLRQALGLQQGLPARVITGVALLLTLLVMRPVGLDVWRHAIE 123 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P ++IT AI R +P FM T + L + S R D+ K + + + Sbjct: 124 PYDRDEITFREAIARAEQPVSRFMLAQTSKASLEQISRL--SGER--DVAKPEDHAFVVK 179 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 +FM+SEL+ +F+IG ++ LPFLIID++VA+ +MAMGMMML P ISLP K++ FVL+D Sbjct: 180 AAAFMMSELKTAFQIGAMLFLPFLIIDLVVASTLMAMGMMMLSPLVISLPLKLLLFVLVD 239 Query: 233 GWSLLVENLVKS 244 GW+L V L S Sbjct: 240 GWTLTVNTLTTS 251 >gi|300310129|ref|YP_003774221.1| type III secretion HrcR transmembrane protein [Herbaspirillum seropedicae SmR1] gi|300072914|gb|ADJ62313.1| type III secretion HrcR transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 220 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 58/207 (28%), Positives = 117/207 (56%), Gaps = 5/207 (2%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + ++++ P++++ T F + +V +LR +G+ VPP L I +AL ++ ++M+PT+ Sbjct: 14 LLALMALVPLMVVTTTSFLKISLVLLVLRNAIGVQQVPPTLAIYGIALALSVFIMAPTVQ 73 Query: 105 ----RSIEMGI-QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 R++ + + P + + Q +P FM + + +F+ A Sbjct: 74 EVGKRAMAVDVSHPAASRTVPILERAQDAFDPLRKFMLKMSHAEQREMFLASAKKLWPKE 133 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + ILIP+F++SEL+ +EIGFLI +PF++ID++++ ++MA+GM + P +I Sbjct: 134 AAKDAQPTDALILIPAFVVSELQTGYEIGFLIYIPFVVIDLLISNLLMALGMQQVSPQTI 193 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246 ++P K++ F L+ GW+ L+ L S++ Sbjct: 194 TIPLKLLLFTLVGGWAKLLNALAMSYV 220 >gi|284922803|emb|CBG35891.1| type III secretion system protein [Escherichia coli 042] Length = 221 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 63/214 (29%), Positives = 123/214 (57%), Gaps = 20/214 (9%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 I ++ ++ P ++ TCF +F IVF I+R +G+ VP N+ + +AL ++ +VM P Sbjct: 9 AILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGIALLLSMFVMMP-- 66 Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAE----------PFWVFMRNNTREKDLSLF--MDM 151 +G + + NN E + VA + ++ + + +S F + Sbjct: 67 -----VG-KEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQK 120 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 +SS N +I +++I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GM Sbjct: 121 VNSSEDNEEIIDDENISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGM 180 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MM+ P +IS P K+I FV +DGW++L + L+ + Sbjct: 181 MMMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214 >gi|300936202|ref|ZP_07151138.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 21-1] gi|300458659|gb|EFK22152.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 21-1] Length = 221 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 62/214 (28%), Positives = 121/214 (56%), Gaps = 20/214 (9%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 I ++ ++ P ++ TCF +F IVF I+R +G+ VP N+ + +AL ++ +VM P Sbjct: 9 AILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMPVG 68 Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAE----------PFWVFMRNNTREKDLSLF--MDM 151 + + NN E + VA + ++ + + +S F + Sbjct: 69 --------KEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFGKIQK 120 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 +SS N +I +++I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GM Sbjct: 121 VNSSEDNEEIIDDENISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGM 180 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MM+ P +IS P K+I FV +DGW++L + L+ + Sbjct: 181 MMMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214 >gi|301027456|ref|ZP_07190793.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 69-1] gi|300394964|gb|EFJ78502.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 69-1] gi|323966655|gb|EGB62087.1| YscR/HrcR family protein type III secretion lipoprotein [Escherichia coli M863] gi|323978518|gb|EGB73600.1| YscR/HrcR family protein type III secretion lipoprotein [Escherichia coli TW10509] Length = 221 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 63/214 (29%), Positives = 123/214 (57%), Gaps = 20/214 (9%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 I ++ ++ P ++ TCF +F IVF I+R +G+ VP N+ + +AL ++ +VM P Sbjct: 9 AILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMP-- 66 Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAE----------PFWVFMRNNTREKDLSLF--MDM 151 +G + + NN E + VA + ++ + + +S F + Sbjct: 67 -----VG-KEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQK 120 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 +SS N +I +++I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GM Sbjct: 121 VNSSEDNEEIIDDENISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGM 180 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MM+ P +IS P K+I FV +DGW++L + L+ + Sbjct: 181 MMMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214 >gi|51103119|gb|AAT96262.1| HrcR [Pseudomonas viridiflava] gi|51103161|gb|AAT96303.1| HrcR [Pseudomonas viridiflava] gi|51103202|gb|AAT96343.1| HrcR [Pseudomonas viridiflava] Length = 193 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 67/199 (33%), Positives = 116/199 (58%), Gaps = 14/199 (7%) Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMG--IQP 113 +I+ T F + +V I R +G+ PPN+ + +AL T ++M+P EMG ++ Sbjct: 1 MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFS---EMGDRVKK 57 Query: 114 L---MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR---NTDITKNDHI 167 L ++ +A + V EP FM TR D + + ++ R K Sbjct: 58 LPEHLDTFAAMESAGKHVVEPLRTFM---TRNLDPDIQTHLLENTQRMWPKEMADKASRD 114 Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227 + +++P+F++SEL+ F+IGFLI +PF++ID+IV+ I++A+GM M+ P +ISLP K++ Sbjct: 115 DLLLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILL 174 Query: 228 FVLIDGWSLLVENLVKSFI 246 FVL+DGW+ L++ L S++ Sbjct: 175 FVLVDGWTRLLDGLFYSYM 193 >gi|268592375|ref|ZP_06126596.1| type III secretion apparatus protein, YscR/HrcR family [Providencia rettgeri DSM 1131] gi|291312161|gb|EFE52614.1| type III secretion apparatus protein, YscR/HrcR family [Providencia rettgeri DSM 1131] Length = 232 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 70/235 (29%), Positives = 122/235 (51%), Gaps = 32/235 (13%) Query: 35 ISTWIVRTFGIFTILSIAPILLIMV------------TCFPRFIIVFSILRTGMGMGSVP 82 +S W+++ F + TI P+L I+ TC+ + IV ++R MG+ VP Sbjct: 2 LSVWVIKEFNMPTIPDGIPLLAIIAFSTLLPFVIAAGTCYLKISIVLIMVRNAMGVQQVP 61 Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN--- 139 +V+ +AL ++ +VM P L +NN + + E F+ N Sbjct: 62 STMVLNGIALLLSIFVMMPVLQD---------VNNHMRQEQVDFSNVESIDNFVENGLGG 112 Query: 140 -------TREKDLSLFMDMAHSSHRNTDITKNDHIEYRI-LIPSFMISELRRSFEIGFLI 191 + L F + +IT ++ L+P++ +SE++ +FEIGF I Sbjct: 113 YKSYLKKYSDPQLVTFFESIQQGRSEEEITADEGKATLFSLLPAYALSEIKSAFEIGFYI 172 Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 LPF+++D+++++I++A+GMMM+ P +IS+P K+I FV IDGWSL+ + LV +I Sbjct: 173 YLPFVVVDLVISSILLALGMMMMSPVTISIPVKLILFVAIDGWSLISKGLVMQYI 227 >gi|289624375|ref|ZP_06457329.1| type III secretion system protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330868641|gb|EGH03350.1| type III secretion system protein YscR [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 218 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 66/208 (31%), Positives = 115/208 (55%), Gaps = 12/208 (5%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + + + P+ ++ +T F + +V ++R +G+ PPNLV+ +AL ++ YV +P + Sbjct: 14 VVATIGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIALILSVYVTTPLIG 73 Query: 105 ---RSIEMGIQPLMN-NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH---SSHR 157 R ++ L N Q+ E + R P + E + F+ S Sbjct: 74 DMYREVQGRDLSLQNVQQLEELGSALR--PPLQAHLSKFANESERGFFVQATETIWSPEA 131 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 D+ +D + +LIP+F+ SEL R+FEIGFL+ +PFL++D++V+ ++M MGM M+ PT Sbjct: 132 RADLRDDDLV---VLIPAFVSSELTRAFEIGFLLYIPFLVVDLLVSNVLMTMGMSMVSPT 188 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 IS+P K+ FV + GWS L+ L+ S+ Sbjct: 189 LISIPLKIFLFVALSGWSRLMHGLILSY 216 >gi|116872065|ref|YP_848846.1| flagellar biosynthesis protein FliP [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740943|emb|CAK20063.1| flagellar biosynthesis protein FliP [Listeria welshimeri serovar 6b str. SLCC5334] Length = 255 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 62/200 (31%), Positives = 114/200 (57%), Gaps = 4/200 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V F + T+LS++ +++M T F IIV + R G+G ++PPN V++ LALF++ ++M Sbjct: 52 VALFVLVTVLSLSASIVLMFTHFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMM 111 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P + + +P + T + ++ NT + D+++ + + Sbjct: 112 QPLITAWYDDVYKPSQKEEWTASKVWDETKPLLTKYVAENTYKHDINMML----KAEGED 167 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 ITK + L+P+F+++++ + F G I L F+ ID+IV+T++M +GMMM+PP +I Sbjct: 168 PITKKEDAPLMALMPAFILTQITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTI 227 Query: 220 SLPFKVIFFVLIDGWSLLVE 239 SLPFK++ F+ I G+ L+ Sbjct: 228 SLPFKILVFIFIGGYGLITN 247 >gi|259908638|ref|YP_002648994.1| surface presentation of antigens protein SpaP [Erwinia pyrifoliae Ep1/96] gi|224964260|emb|CAX55767.1| type III secretion apparatus [Erwinia pyrifoliae Ep1/96] Length = 223 Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 66/210 (31%), Positives = 122/210 (58%), Gaps = 10/210 (4%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 G+ + ++ P L+ TCF +F IV ++R +G+ VP NL + +AL ++ +VM P Sbjct: 10 GVLSFFTLLPFLIAGGTCFIKFSIVLVMMRNALGIQQVPSNLTLNGIALILSAFVMMPVC 69 Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN---NTREKDLSLFMDMAHSSHRNT- 159 R I ++ + ++ AI ++ + R + + DL F + + Sbjct: 70 QR-IADDVES-RHIDFNQSGAIPQLMDDGLGSYREYLVHYSDHDLIHFFNKVQKKRNDDN 127 Query: 160 --DITKND--HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215 DIT+++ + L+P++ +SE++ +F+I F I +PF++IDM+V++I++A+GMMM+ Sbjct: 128 EVDITEHELRRLPLMTLMPAYALSEIQSAFKIAFYIYIPFVVIDMVVSSILLALGMMMMS 187 Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 P +IS+P K+I FV +DGWSLL + L+ + Sbjct: 188 PVTISIPIKLILFVAMDGWSLLAKGLITQY 217 >gi|283478610|emb|CAY74526.1| Surface presentation of antigens protein SpaP [Erwinia pyrifoliae DSM 12163] Length = 229 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 66/210 (31%), Positives = 122/210 (58%), Gaps = 10/210 (4%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 G+ + ++ P L+ TCF +F IV ++R +G+ VP NL + +AL ++ +VM P Sbjct: 16 GVLSFFTLLPFLIAGGTCFIKFSIVLVMMRNALGIQQVPSNLTLNGIALILSAFVMMPVC 75 Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN---NTREKDLSLFMDMAHSSHRN-- 158 R I ++ + ++ AI ++ + R + + DL F + + Sbjct: 76 QR-IADDVES-RHIDFNQSGAIPQLMDDGLGSYREYLVHYSDHDLIHFFNKVQKKRNDDN 133 Query: 159 -TDITKND--HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215 DIT+++ + L+P++ +SE++ +F+I F I +PF++IDM+V++I++A+GMMM+ Sbjct: 134 EVDITEHELRRLPLMTLMPAYALSEIQSAFKIAFYIYIPFVVIDMVVSSILLALGMMMMS 193 Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 P +IS+P K+I FV +DGWSLL + L+ + Sbjct: 194 PVTISIPIKLILFVAMDGWSLLAKGLITQY 223 >gi|152975180|ref|YP_001374697.1| flagellar biosynthesis protein FliP [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023932|gb|ABS21702.1| Triacylglycerol lipase [Bacillus cytotoxicus NVH 391-98] Length = 252 Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 111/186 (59%), Gaps = 6/186 (3%) Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F F+IV I R G+G+ ++PPN V++ LALF++ + M P L + P+ +I Sbjct: 70 THFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKGDVWDPMTKEKI 129 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMI 178 T + A ++ A +M +T + DL + + + R ++ KN I L+PSF + Sbjct: 130 TVSQAAEKTAPIMKEYMAKHTYKHDLKMMLKV-----RGEELPKNMKDISLFTLVPSFTL 184 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 +++++ G I L F+ ID+I++T++M +GMMM+PP +SLPFK++ F+ + G++ +V Sbjct: 185 TQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFIYLGGYTKIV 244 Query: 239 ENLVKS 244 + + K+ Sbjct: 245 DIMFKT 250 >gi|227357591|ref|ZP_03841944.1| flagellar biosynthesis protein FliP [Proteus mirabilis ATCC 29906] gi|227162301|gb|EEI47305.1| flagellar biosynthesis protein FliP [Proteus mirabilis ATCC 29906] Length = 219 Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 63/199 (31%), Positives = 120/199 (60%), Gaps = 8/199 (4%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P ++ TC+ +F IV + R +G+ VP N+V+ ++AL M +VM+P I+ Sbjct: 18 PFIIAAGTCYLKFSIVLVMTRNALGVQQVPSNMVLNAIALMMALFVMTPITKNICYYVIE 77 Query: 113 PLMNNQITETTAIQRVA-EPFWVFMRN--NTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169 ++ ++ AI+ + E + + + + DL F + A + N+D K ++IE Sbjct: 78 NKVD--MSSPDAIESFSNEALGDYKKYLYHYSDPDLLAFFEQAQENRPNSDGDK-ENIEN 134 Query: 170 RIL--IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227 +L +P++ +SE++ +F IGF + LPF++ID++V+ I++A+GMMM+ P ++S+P K+I Sbjct: 135 SLLSLLPAYALSEIKSAFIIGFYLYLPFIVIDLVVSCILLALGMMMMSPITLSVPLKLIL 194 Query: 228 FVLIDGWSLLVENLVKSFI 246 F+ +DGW LL + L+ ++ Sbjct: 195 FIAMDGWGLLSKGLINQYL 213 >gi|71735866|ref|YP_274731.1| type III secretion system protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556419|gb|AAZ35630.1| type III secretion component, putative [Pseudomonas syringae pv. phaseolicola 1448A] Length = 218 Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 65/207 (31%), Positives = 113/207 (54%), Gaps = 10/207 (4%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + + + P+ ++ +T F + +V ++R +G+ PPNLV+ +AL ++ YV +P + Sbjct: 14 VVATIGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIALILSVYVTTPLIG 73 Query: 105 ---RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH---SSHRN 158 R ++ L N Q E + + E + F+ S Sbjct: 74 DMYREVQGRDLSLQNVQQLEELG-SALCPTLQAHLSKFANESERGFFVQATETIWSPEAR 132 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 D+ +D + +LIP+F+ SEL R+FEIGFL+ +PFL++D++V+ ++MAMGM M+ PT Sbjct: 133 ADLRDDDLV---VLIPAFVSSELTRAFEIGFLLYIPFLVVDLLVSNVLMAMGMSMVSPTL 189 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 IS+P K+ FV + GWS L+ L+ S+ Sbjct: 190 ISIPLKIFLFVALSGWSRLMHGLILSY 216 >gi|312172195|emb|CBX80452.1| Surface presentation of antigens protein SpaP [Erwinia amylovora ATCC BAA-2158] Length = 229 Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 65/210 (30%), Positives = 118/210 (56%), Gaps = 10/210 (4%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 + + ++ P ++ TCF +F IV ++R +G+ VP NL + ++L +T ++M P Sbjct: 16 AVLSFFTLLPFIIAGGTCFIKFSIVLVMMRNALGIQQVPSNLTLNGISLILTAFIMMPVC 75 Query: 104 DRSIE-MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT 162 R I+ + + + NQ + + Q V + + D L RN D T Sbjct: 76 QRIIDDVETRHIDFNQSSAFS--QFVNDGLDGYREYLVHYSDHDLIHFFNKVQQRNNDDT 133 Query: 163 KNDHIEYRI-------LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215 + E+ + L+P++ +SE++ +F+I F I +PF++IDM+V++I++A+GMMM+ Sbjct: 134 VANTFEHELTRLPLMTLMPAYALSEIQSAFKIAFYIYIPFVVIDMVVSSILLALGMMMMS 193 Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 P +IS+P K+I FV +DGWSLL + L+ + Sbjct: 194 PVTISIPIKLILFVAMDGWSLLTKGLIAQY 223 >gi|307944366|ref|ZP_07659707.1| type III secretion apparatus protein, YscR/HrcR family [Roseibium sp. TrichSKD4] gi|307772712|gb|EFO31932.1| type III secretion apparatus protein, YscR/HrcR family [Roseibium sp. TrichSKD4] Length = 212 Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 113/205 (55%), Gaps = 3/205 (1%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 G+ + SI P ++ T F + + ILR +G+ PPN+ + ++ L + ++ +P Sbjct: 9 GMLILASIVPFFIVGTTAFIKIATILFILRNAIGLQQTPPNMALYAITLALVAFIQAPVF 68 Query: 104 DRSIE-MGIQPL-MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161 + + + P+ N+ + A + +P FM + D + F+D + ++ + + Sbjct: 69 VATYDILAALPIDFNSPASLQDAFVKGLQPISDFMNKHVTLADKTFFLDAGNELYKGSRL 128 Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221 ++ + +L+P+FM +EL + + G LI LPFL ID++V I+ A+GM M+ P ISL Sbjct: 129 KVTEN-SFLVLLPAFMNAELNAALQAGVLIFLPFLAIDIVVTNILSALGMSMVSPMVISL 187 Query: 222 PFKVIFFVLIDGWSLLVENLVKSFI 246 PFKV+ FV DGWS L +L+ S+I Sbjct: 188 PFKVLLFVAADGWSKLTHSLILSYI 212 >gi|289433954|ref|YP_003463826.1| flagellar biosynthesis protein FliP [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170198|emb|CBH26738.1| flagellar biosynthesis protein FliP [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313639091|gb|EFS04067.1| flagellar biosynthesis protein FliP [Listeria seeligeri FSL S4-171] Length = 255 Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 62/198 (31%), Positives = 113/198 (57%), Gaps = 4/198 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V F + TILS++ +++M T F IIV + R G+G ++PPN V++ LALF++ ++M Sbjct: 52 VALFVLVTILSLSASIVLMFTHFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMM 111 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P + + +P + + + ++ NT + D+ +M + Sbjct: 112 QPLITAWYDDVYKPSQTEEWSASKVWDETKPLLTKYVAENTYKHDI----NMMLKAEGEK 167 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 +TK + L+P+F+++++ + F G I L F+ ID+IV+T++M +GMMM+PP +I Sbjct: 168 PVTKKEDAPLMALMPAFILTQITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTI 227 Query: 220 SLPFKVIFFVLIDGWSLL 237 SLPFK++ F+ I G+ L+ Sbjct: 228 SLPFKILVFIFIGGYGLI 245 >gi|197286517|ref|YP_002152389.1| surface presentation of antigens protein SpaP [Proteus mirabilis HI4320] gi|194684004|emb|CAR45294.1| type III secretion system protein [Proteus mirabilis HI4320] Length = 219 Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 63/199 (31%), Positives = 120/199 (60%), Gaps = 8/199 (4%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P ++ TC+ +F IV + R +G+ VP N+V+ ++AL M +VM+P I+ Sbjct: 18 PFIIAAGTCYLKFSIVLVMTRNALGVQQVPSNMVLNAIALMMALFVMTPITKNICYYIIE 77 Query: 113 PLMNNQITETTAIQRVA-EPFWVFMRN--NTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169 ++ ++ AI+ + E + + + + DL F + A + N+D K ++IE Sbjct: 78 NKVD--MSSPDAIESFSNEALGDYKKYLYHYSDPDLLAFFEQAQENRPNSDGDK-ENIEN 134 Query: 170 RIL--IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227 +L +P++ +SE++ +F IGF + LPF++ID++V+ I++A+GMMM+ P ++S+P K+I Sbjct: 135 SLLSLLPAYALSEIKSAFIIGFYLYLPFIVIDLVVSCILLALGMMMMSPITLSVPLKLIL 194 Query: 228 FVLIDGWSLLVENLVKSFI 246 F+ +DGW LL + L+ ++ Sbjct: 195 FIAMDGWGLLSKGLINQYL 213 >gi|313634413|gb|EFS01000.1| flagellar biosynthesis protein FliP [Listeria seeligeri FSL N1-067] Length = 255 Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 61/198 (30%), Positives = 114/198 (57%), Gaps = 4/198 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V F + TILS++ +++M T F IIV + R G+G ++PPN V++ LALF++ ++M Sbjct: 52 VALFVLVTILSLSASIVLMFTHFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMM 111 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P + + +P + + + ++ NT + D+++ + + Sbjct: 112 QPLITAWYDDVYKPSQTEEWSASKVWDETKPLLTKYVAENTYKHDINMMLK----AEGEE 167 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 +TK + L+P+F+++++ + F G I L F+ ID+IV+T++M +GMMM+PP +I Sbjct: 168 PVTKKEDAPLMALMPAFILTQITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTI 227 Query: 220 SLPFKVIFFVLIDGWSLL 237 SLPFK++ F+ I G+ L+ Sbjct: 228 SLPFKILVFIFIGGYGLI 245 >gi|315301906|ref|ZP_07872919.1| flagellar biosynthesis protein FliP [Listeria ivanovii FSL F6-596] gi|313629722|gb|EFR97842.1| flagellar biosynthesis protein FliP [Listeria ivanovii FSL F6-596] Length = 255 Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 61/200 (30%), Positives = 113/200 (56%), Gaps = 4/200 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V F + T+LS++ +++M T F IIV + R G+G ++PPN V++ LALF++ ++M Sbjct: 52 VALFVLVTVLSLSASIVLMFTHFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMM 111 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P + + +P + + + ++ NT + D+ +M + Sbjct: 112 QPLITAWYDDVYKPSQTEEWSASKVWDETKPLLTKYVAENTYKHDI----NMMLKAEGEK 167 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 +TK + L+P+F+++++ + F G I L F+ ID+IV+T++M +GMMM+PP +I Sbjct: 168 PVTKKEDAPLMALMPAFILTQITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTI 227 Query: 220 SLPFKVIFFVLIDGWSLLVE 239 SLPFK++ F+ I G+ L+ Sbjct: 228 SLPFKILVFIFIGGYGLITN 247 >gi|254255057|ref|ZP_04948374.1| Type III secretory pathway component EscR [Burkholderia dolosa AUO158] gi|124899702|gb|EAY71545.1| Type III secretory pathway component EscR [Burkholderia dolosa AUO158] Length = 278 Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 68/220 (30%), Positives = 122/220 (55%), Gaps = 29/220 (13%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP-- 101 G+ +S+ P +L TC+ +F IVF I+R +G+ VP NLV+ ++AL M+ +VM P Sbjct: 66 GLLAFVSLLPFVLAAGTCYLKFSIVFVIVRNAIGLQQVPSNLVLNAVALMMSIFVMMPVG 125 Query: 102 ------TLDRSIEM----GIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMD 150 LD ++ +Q ++ + +QR ++P +L+ F Sbjct: 126 KAIYDQQLDNPVDFTSRESVQQFVDGGLGGYRQYLQRYSDP------------ELTAFFQ 173 Query: 151 MAH----SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 + ++ L+P++ +SE++ +F+IGF I LPF+I+D++V++++ Sbjct: 174 KIQVDRAVDADHAADASDEEPAIAALLPAYALSEIKSAFKIGFYIYLPFIIVDLVVSSVL 233 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +A+GMMM+ P IS+P K+I FV +DGWS+L + LVK ++ Sbjct: 234 LALGMMMMSPVVISVPIKLILFVSLDGWSILSKGLVKQYL 273 >gi|313624918|gb|EFR94826.1| flagellar biosynthesis protein FliP [Listeria innocua FSL J1-023] Length = 255 Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 60/198 (30%), Positives = 114/198 (57%), Gaps = 4/198 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V F + T+LS++ +++M T F IIV + R G+G ++PPN V++ LALF++ ++M Sbjct: 52 VALFVLVTVLSLSASIVLMFTHFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMM 111 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P + + +P + + + ++ NT + D+++ + + Sbjct: 112 QPLITAWYDDVYKPSQKEEWSASKVWDETQPLLTKYVAENTYKHDINMML----KAEGEE 167 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 +TK + L+P+F+++++ + F G I L F+ ID+IV+T++M +GMMM+PP +I Sbjct: 168 PVTKKEDAPLMALMPAFILTQITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTI 227 Query: 220 SLPFKVIFFVLIDGWSLL 237 SLPFK++ F+ I G+ L+ Sbjct: 228 SLPFKILVFIFIGGYGLI 245 >gi|16799759|ref|NP_470027.1| flagellar biosynthesis protein FliP [Listeria innocua Clip11262] gi|16413136|emb|CAC95916.1| lin0684 [Listeria innocua Clip11262] gi|313620096|gb|EFR91601.1| flagellar biosynthesis protein FliP [Listeria innocua FSL S4-378] Length = 255 Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 60/198 (30%), Positives = 114/198 (57%), Gaps = 4/198 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V F + T+LS++ +++M T F IIV + R G+G ++PPN V++ LALF++ ++M Sbjct: 52 VALFVLVTVLSLSASIVLMFTHFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMM 111 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P + + +P + + + ++ NT + D+++ + + Sbjct: 112 QPLITAWYDDVYKPSQKEEWSASKVWDETQPLLTKYVAENTYKHDINMML----KAEGED 167 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 +TK + L+P+F+++++ + F G I L F+ ID+IV+T++M +GMMM+PP +I Sbjct: 168 PVTKKEDAPLMALMPAFILTQITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTI 227 Query: 220 SLPFKVIFFVLIDGWSLL 237 SLPFK++ F+ I G+ L+ Sbjct: 228 SLPFKILVFIFIGGYGLI 245 >gi|315281327|ref|ZP_07869975.1| flagellar biosynthetic protein FliP [Listeria marthii FSL S4-120] gi|313615025|gb|EFR88521.1| flagellar biosynthetic protein FliP [Listeria marthii FSL S4-120] Length = 219 Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 114/200 (57%), Gaps = 4/200 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V F + T+LS++ +++M T F IIV + R G+G ++PPN V++ LALF++ ++M Sbjct: 16 VALFVLVTVLSLSASIVLMFTHFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMM 75 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P + + +P + + + ++ NT + D+++ + + Sbjct: 76 QPLITAWYDDVYKPSQKEEWSASKVWDETQPLLTKYVAENTYKHDINMML----KAEGED 131 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 +TK + L+P+F+++++ + F G I L F+ ID+IV+T++M +GMMM+PP +I Sbjct: 132 PVTKKEDAPLMALMPAFILTQITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTI 191 Query: 220 SLPFKVIFFVLIDGWSLLVE 239 SLPFK++ F+ I G+ L+ Sbjct: 192 SLPFKILVFIFIGGYGLITN 211 >gi|46906927|ref|YP_013316.1| flagellar biosynthesis protein FliP [Listeria monocytogenes serotype 4b str. F2365] gi|47091639|ref|ZP_00229435.1| flagellar biosynthesis protein FliP [Listeria monocytogenes str. 4b H7858] gi|226223307|ref|YP_002757414.1| flagellar biosynthesic protein FliP [Listeria monocytogenes Clip81459] gi|254824044|ref|ZP_05229045.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL J1-194] gi|254853119|ref|ZP_05242467.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL R2-503] gi|254932044|ref|ZP_05265403.1| flagellar biosynthesis protein FliP [Listeria monocytogenes HPB2262] gi|255521627|ref|ZP_05388864.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL J1-175] gi|300764487|ref|ZP_07074480.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL N1-017] gi|46880193|gb|AAT03493.1| flagellar biosynthesis protein FliP [Listeria monocytogenes serotype 4b str. F2365] gi|47019958|gb|EAL10695.1| flagellar biosynthesis protein FliP [Listeria monocytogenes str. 4b H7858] gi|225875769|emb|CAS04472.1| Putative flagellar biosynthesic protein FliP [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606470|gb|EEW19078.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL R2-503] gi|293583597|gb|EFF95629.1| flagellar biosynthesis protein FliP [Listeria monocytogenes HPB2262] gi|293593273|gb|EFG01034.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL J1-194] gi|300514841|gb|EFK41895.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL N1-017] gi|328467245|gb|EGF38325.1| flagellar biosynthesis protein FliP [Listeria monocytogenes 1816] gi|328475641|gb|EGF46390.1| flagellar biosynthesis protein FliP [Listeria monocytogenes 220] gi|332311101|gb|EGJ24196.1| Flagellar biosynthesis protein FliP [Listeria monocytogenes str. Scott A] Length = 255 Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 60/198 (30%), Positives = 114/198 (57%), Gaps = 4/198 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V F + T+LS++ +++M T F IIV + R G+G ++PPN V++ LALF++ ++M Sbjct: 52 VALFVLVTVLSLSASIVLMFTHFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMM 111 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P + + +P + + + ++ NT + D+++ + + Sbjct: 112 QPLITAWYDDVYKPSQKEEWSASKVWDETKPLLTKYVAENTYKHDINMML----KAEGED 167 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 +TK + L+P+F+++++ + F G I L F+ ID+IV+T++M +GMMM+PP +I Sbjct: 168 PVTKKEDAPLMALMPAFILTQITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTI 227 Query: 220 SLPFKVIFFVLIDGWSLL 237 SLPFK++ F+ I G+ L+ Sbjct: 228 SLPFKILVFIFIGGYGLI 245 >gi|313610171|gb|EFR85472.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL F2-208] Length = 252 Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 60/198 (30%), Positives = 114/198 (57%), Gaps = 4/198 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V F + T+LS++ +++M T F IIV + R G+G ++PPN V++ LALF++ ++M Sbjct: 52 VALFVLVTVLSLSASIVLMFTHFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMM 111 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P + + +P + + + ++ NT + D+++ + + Sbjct: 112 QPLITAWYDDVYKPSQKEEWSASKVWDETQPLLTKYVAENTYKHDINMML----KAEGED 167 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 +TK + L+P+F+++++ + F G I L F+ ID+IV+T++M +GMMM+PP +I Sbjct: 168 PVTKKEDAPLMALMPAFILTQITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTI 227 Query: 220 SLPFKVIFFVLIDGWSLL 237 SLPFK++ F+ I G+ L+ Sbjct: 228 SLPFKILVFIFIGGYGLI 245 >gi|47095241|ref|ZP_00232852.1| flagellar biosynthesis protein FliP [Listeria monocytogenes str. 1/2a F6854] gi|224498759|ref|ZP_03667108.1| flagellar biosynthesis protein FliP [Listeria monocytogenes Finland 1988] gi|254829333|ref|ZP_05234020.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL N3-165] gi|254900088|ref|ZP_05260012.1| flagellar biosynthesis protein FliP [Listeria monocytogenes J0161] gi|254911359|ref|ZP_05261371.1| flagellar biosynthesis protein FliP [Listeria monocytogenes J2818] gi|254935686|ref|ZP_05267383.1| flagellar biosynthesis protein FliP [Listeria monocytogenes F6900] gi|284801006|ref|YP_003412871.1| flagellar biosynthesis protein FliP [Listeria monocytogenes 08-5578] gi|284994148|ref|YP_003415916.1| flagellar biosynthesis protein FliP [Listeria monocytogenes 08-5923] gi|47016312|gb|EAL07234.1| flagellar biosynthesis protein FliP [Listeria monocytogenes str. 1/2a F6854] gi|258601745|gb|EEW15070.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL N3-165] gi|258608268|gb|EEW20876.1| flagellar biosynthesis protein FliP [Listeria monocytogenes F6900] gi|284056568|gb|ADB67509.1| flagellar biosynthesis protein FliP [Listeria monocytogenes 08-5578] gi|284059615|gb|ADB70554.1| flagellar biosynthesis protein FliP [Listeria monocytogenes 08-5923] gi|293589295|gb|EFF97629.1| flagellar biosynthesis protein FliP [Listeria monocytogenes J2818] Length = 255 Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 60/198 (30%), Positives = 114/198 (57%), Gaps = 4/198 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V F + T+LS++ +++M T F IIV + R G+G ++PPN V++ LALF++ ++M Sbjct: 52 VALFVLVTVLSLSASIVLMFTHFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMM 111 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P + + +P + + + ++ NT + D+++ + + Sbjct: 112 QPLITAWYDDVYKPSQKEEWSASKVWDETQPLLTKYVAENTYKHDINMML----KAEGED 167 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 +TK + L+P+F+++++ + F G I L F+ ID+IV+T++M +GMMM+PP +I Sbjct: 168 PVTKKEDAPLMALMPAFILTQITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTI 227 Query: 220 SLPFKVIFFVLIDGWSLL 237 SLPFK++ F+ I G+ L+ Sbjct: 228 SLPFKILVFIFIGGYGLI 245 >gi|299822252|ref|ZP_07054138.1| flagellar biosynthesis protein FliP [Listeria grayi DSM 20601] gi|299815781|gb|EFI83019.1| flagellar biosynthesis protein FliP [Listeria grayi DSM 20601] Length = 255 Score = 114 bits (286), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 59/200 (29%), Positives = 111/200 (55%), Gaps = 4/200 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V F I T+LS++ +++M T F IIV + R G+G ++PPN V++ LALF+ ++M Sbjct: 52 VSLFLIVTLLSLSASIVLMFTHFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLAIFMM 111 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P + + +P + + + ++ NT D+++ + + Sbjct: 112 QPVANEWYQDVWKPGQKEEWKASKVWKETQPILTTYIAKNTYRHDINMMLK----AEGKK 167 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + K + L+P+F+++++ + F G I L F+ ID++V+T++M +GMMM+PP +I Sbjct: 168 AVAKKEDASLMALMPAFILTQITQGFLTGMFIYLAFVFIDLVVSTLLMYLGMMMVPPMTI 227 Query: 220 SLPFKVIFFVLIDGWSLLVE 239 SLPFK++ F+ I G+ L+ Sbjct: 228 SLPFKILVFIFIGGYGLITN 247 >gi|16802718|ref|NP_464203.1| flagellar biosynthesis protein FliP [Listeria monocytogenes EGD-e] gi|224502019|ref|ZP_03670326.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL R2-561] gi|16410065|emb|CAC98754.1| lmo0676 [Listeria monocytogenes EGD-e] Length = 255 Score = 114 bits (286), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 60/198 (30%), Positives = 114/198 (57%), Gaps = 4/198 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V F + T+LS++ +++M T F IIV + R G+G ++PPN V++ LALF++ ++M Sbjct: 52 VALFVLVTVLSLSASIVLMFTHFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMM 111 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P + + +P + + + ++ NT + D+++ + + Sbjct: 112 QPLITAWYDDVYKPSQKEEWSASKVWDETQPLLTKYVAENTYKHDINMML----KAEGED 167 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 +TK + L+P+F+++++ + F G I L F+ ID+IV+T++M +GMMM+PP +I Sbjct: 168 PVTKKEDAPLMALMPAFILTQITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTI 227 Query: 220 SLPFKVIFFVLIDGWSLL 237 SLPFK++ F+ I G+ L+ Sbjct: 228 SLPFKILVFIFIGGYGLI 245 >gi|290892876|ref|ZP_06555867.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL J2-071] gi|290557688|gb|EFD91211.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL J2-071] Length = 255 Score = 114 bits (286), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 60/198 (30%), Positives = 114/198 (57%), Gaps = 4/198 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V F + T+LS++ +++M T F IIV + R G+G ++PPN V++ LALF++ ++M Sbjct: 52 VALFVMVTVLSLSASIVLMFTHFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMM 111 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P + + +P + + + ++ NT + D+++ + + Sbjct: 112 QPLITAWYDDVYKPSQKEEWSASKVWDETQPLLTKYVAENTYKHDINMML----KAEGED 167 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 +TK + L+P+F+++++ + F G I L F+ ID+IV+T++M +GMMM+PP +I Sbjct: 168 PVTKKEDAPLMALMPAFILTQITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTI 227 Query: 220 SLPFKVIFFVLIDGWSLL 237 SLPFK++ F+ I G+ L+ Sbjct: 228 SLPFKILVFIFIGGYGLI 245 >gi|293416351|ref|ZP_06658990.1| YscR/HrcR family type III secretion apparatus protein [Escherichia coli B185] gi|291431707|gb|EFF04690.1| YscR/HrcR family type III secretion apparatus protein [Escherichia coli B185] Length = 220 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 54/198 (27%), Positives = 116/198 (58%), Gaps = 4/198 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P ++ TCF +F +VF ++R +G+ VP N+V+ +AL ++ +VM P ++++ Sbjct: 18 PFIIASGTCFVKFSVVFIMMRNALGLQQVPSNMVLNGVALMLSAFVMYPVTQQALDYYQN 77 Query: 113 PLMNNQITETTA--IQRVAEPFWVFMRNNTREKDLSLFMDMAHS--SHRNTDITKNDHIE 168 +N + ++ + ++ + ++ + ++ ++ F D H S + + Sbjct: 78 NSVNFRDADSVSDFVEHGLGRYREYLSRYSDKELVAFFEDAQHQRVSREEALAAEGEQTS 137 Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 L+P++ +SE++ +F I F + LPF+++D++++++++A+GMMM+ P +IS P K+I F Sbjct: 138 ILSLLPAYALSEIKSAFRICFYLYLPFVVVDLVISSVLLALGMMMMSPVTISTPVKLILF 197 Query: 229 VLIDGWSLLVENLVKSFI 246 V +DGW+LL LV ++ Sbjct: 198 VAMDGWTLLSRGLVMQYM 215 >gi|256019339|ref|ZP_05433204.1| surface presentation of antigens protein SpaP [Shigella sp. D9] gi|332280453|ref|ZP_08392866.1| type III secretion protein EpaP [Shigella sp. D9] gi|332102805|gb|EGJ06151.1| type III secretion protein EpaP [Shigella sp. D9] Length = 220 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 122/214 (57%), Gaps = 21/214 (9%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 I ++ ++ P ++ TCF +F IVF I+R +G+ VP N+ + +AL ++ +VM P Sbjct: 9 AILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMP-- 66 Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAE----------PFWVFMRNNTREKDLSLF--MDM 151 +G + + NN E + VA + ++ + + +S F + Sbjct: 67 -----VG-KEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQK 120 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 +SS N +I +D+I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GM Sbjct: 121 VNSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGM 180 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MM P +IS P K+I FV +DGW++L + L+ + Sbjct: 181 MM-SPVTISTPIKLILFVAMDGWTMLSKGLILQY 213 >gi|188534036|ref|YP_001907833.1| surface presentation of antigens protein SpaP [Erwinia tasmaniensis Et1/99] gi|188029078|emb|CAO96946.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99] Length = 223 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 65/212 (30%), Positives = 118/212 (55%), Gaps = 12/212 (5%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 + + ++ P ++ TCF +F IV ++R +G+ VP NL + +AL +T +VM P Sbjct: 10 ALLSFFTLLPFIIAGGTCFIKFSIVLVMMRNALGIQQVPSNLTLNGVALVLTAFVMMPVC 69 Query: 104 DRSIEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT 162 R G + E A+ Q + E + R D +L + + HRN ++T Sbjct: 70 QRI--SGYIEAKSLDFNERGALSQLMNEGIESYREYLVRYSDHNLILFFNNVEHRN-EVT 126 Query: 163 KND--------HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214 D + L+P++ +SE++ +F I F + +PF++ID++V++I++A+GMMM+ Sbjct: 127 LEDRVPDEELSQLSLLTLMPAYALSEIQSAFRIAFYLYIPFVVIDLVVSSILLALGMMMM 186 Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 P +IS+P K+I FV +DGW+LL + L+ ++ Sbjct: 187 SPVTISIPIKLILFVAMDGWALLAKGLITQYL 218 >gi|46203617|ref|ZP_00051259.2| COG1338: Flagellar biosynthesis pathway, component FliP [Magnetospirillum magnetotacticum MS-1] Length = 210 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 60/150 (40%), Positives = 93/150 (62%), Gaps = 2/150 (1%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T+L++AP +L+M T F R ++V SILR+ +G + PPN VI+SLALF+T +VM+PT Sbjct: 51 LITVLALAPSVLVMATAFTRIVVVLSILRSALGTQTAPPNAVIVSLALFLTAFVMAPTAR 110 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 + GI+PLM QI+++ A +R + PF + R ++ S + + R I + Sbjct: 111 EAYRAGIEPLMAGQISQSQAFERASGPFQ-DLHGAQRPREGSETVPRHGAPARPGRIQEA 169 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILP 194 + L P+FMI LRR+FEIGFL+ +P Sbjct: 170 VGPGDQSL-PAFMIFGLRRAFEIGFLLFIP 198 >gi|310767462|gb|ADP12412.1| surface presentation of antigens protein SpaP [Erwinia sp. Ejp617] Length = 223 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 123/210 (58%), Gaps = 10/210 (4%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 + + ++ P L+ TCF +F IV ++R +G+ VP NL + +AL ++ +VM P Sbjct: 10 AVLSFFTLLPFLIAGGTCFIKFSIVLVMMRNALGIQQVPSNLTLNGIALILSAFVMMPVC 69 Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 R I ++ + ++ AI ++ + + ++ + + + F ++ + + Sbjct: 70 QR-IADDVES-RHIDFNQSGAIPQLMDDGLGSYREYLVHYSDHDLIHFFNNVQKKRNDDN 127 Query: 160 DITKNDHIEYRI----LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215 ++ +H R+ L+P++ +SE++ +F+I F I +PF++IDM+V++I++A+GMMM+ Sbjct: 128 EVDITEHELRRLPLMTLMPAYALSEIQSAFKIAFYIYIPFVVIDMVVSSILLALGMMMMS 187 Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 P +IS+P K+I FV +DGWSLL + L+ + Sbjct: 188 PVTISIPIKLILFVAMDGWSLLAKGLITQY 217 >gi|217965226|ref|YP_002350904.1| flagellar biosynthesis protein [Listeria monocytogenes HCC23] gi|217334496|gb|ACK40290.1| flagellar biosynthesis protein [Listeria monocytogenes HCC23] gi|307570215|emb|CAR83394.1| flagellar biosynthesis protein [Listeria monocytogenes L99] Length = 255 Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 60/200 (30%), Positives = 113/200 (56%), Gaps = 4/200 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V F + T+LS++ +++M T F IIV + R G+G ++PPN V++ LALF++ ++M Sbjct: 52 VALFVMVTVLSLSASIVLMFTHFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMM 111 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P + + +P + + ++ NT + D+++ + + Sbjct: 112 QPLITAWYDDVYKPSQKEDWSASKVWDETQPLLTKYVAENTYKHDINMML----KAEGED 167 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 +TK + L+P+F+++++ + F G I L F+ ID+IV+T++M +GMMM+PP +I Sbjct: 168 PVTKKEDAPLMALMPAFILTQITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTI 227 Query: 220 SLPFKVIFFVLIDGWSLLVE 239 SLPFK++ F+ I G+ L+ Sbjct: 228 SLPFKILVFIFIGGYGLITN 247 >gi|292488067|ref|YP_003530944.1| surface presentation of antigens protein SpaP [Erwinia amylovora CFBP1430] gi|291553491|emb|CBA20536.1| Surface presentation of antigens protein SpaP [Erwinia amylovora CFBP1430] Length = 229 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 116/210 (55%), Gaps = 10/210 (4%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 + + ++ P ++ TCF +F IV ++R +G+ VP NL + ++L +T ++M P Sbjct: 16 AVLSFFTLLPFIIAGGTCFIKFSIVLVMMRNALGIQQVPSNLTLNGISLILTAFIMMPVC 75 Query: 104 DRSIE-MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT 162 R I+ + + + NQ + + Q V + + D L RN D Sbjct: 76 QRIIDDVETRHIDFNQSSAFS--QFVNDGLDGYREYLVHYSDHDLIHFFNKVQQRNNDDN 133 Query: 163 KNDHIEYRI-------LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215 + E+ + L+P++ +SE++ +F I F I +PF++IDM+V++I++A+GMMM+ Sbjct: 134 VANTFEHELTRLPLMTLMPAYALSEIQSAFRIAFYIYIPFVVIDMVVSSILLALGMMMMS 193 Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 P +IS+P K+I FV +DGWSLL + L+ + Sbjct: 194 PVTISIPIKLILFVAMDGWSLLTKGLIAQY 223 >gi|292899278|ref|YP_003538647.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291199126|emb|CBJ46240.1| type III secretion system protein [Erwinia amylovora ATCC 49946] Length = 223 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 64/210 (30%), Positives = 116/210 (55%), Gaps = 10/210 (4%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 + + ++ P ++ TCF +F IV ++R +G+ VP NL + ++L +T ++M P Sbjct: 10 AVLSFFTLLPFIIAGGTCFIKFSIVLVMMRNALGIQQVPSNLTLNGISLILTAFIMMPVC 69 Query: 104 DRSIE-MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT 162 R I+ + + + NQ + + Q V + + D L RN D Sbjct: 70 QRIIDDVETRHIDFNQSSAFS--QFVNDGLDGYREYLVHYSDHDLIHFFNKVQQRNNDDN 127 Query: 163 KNDHIEYRI-------LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215 + E+ + L+P++ +SE++ +F I F I +PF++IDM+V++I++A+GMMM+ Sbjct: 128 VANTFEHELTRLPLMTLMPAYALSEIQSAFRIAFYIYIPFVVIDMVVSSILLALGMMMMS 187 Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 P +IS+P K+I FV +DGWSLL + L+ + Sbjct: 188 PVTISIPIKLILFVAMDGWSLLTKGLIAQY 217 >gi|167030914|gb|ABZ05782.1| HrcR [Pectobacterium carotovorum subsp. carotovorum] Length = 217 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 72/203 (35%), Positives = 125/203 (61%), Gaps = 8/203 (3%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSI 107 LS+ P+++I+ TCF + IV I R +G+ VPPN+ + +AL T +VM+P D S Sbjct: 18 LSLIPLMMIVCTCFLKIAIVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVFQDISK 77 Query: 108 EMGIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 + +PL IT A + EP FM +R D + + +S N + ++ Sbjct: 78 RVQEKPLDMTDITSLQASVTYGLEPLQTFM---SRNVDPDILTHLHENSLHNVACSLSEK 134 Query: 167 IEYR---ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 + + ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP Sbjct: 135 VNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPL 194 Query: 224 KVIFFVLIDGWSLLVENLVKSFI 246 K++ FVL++GW+ L++ L S++ Sbjct: 195 KLLLFVLVNGWTRLLDGLFYSYL 217 >gi|300906599|ref|ZP_07124290.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 84-1] gi|301303009|ref|ZP_07209136.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 124-1] gi|71388159|gb|AAZ31293.1| EpaP [Escherichia coli] gi|300401638|gb|EFJ85176.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 84-1] gi|300841673|gb|EFK69433.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 124-1] gi|315256734|gb|EFU36702.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 85-1] Length = 221 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 121/214 (56%), Gaps = 20/214 (9%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 I T+ ++ P ++ T F +F IVF I+R +G+ VP N+ + +AL ++ +VM P Sbjct: 9 AILTLFTLLPFIIASGTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMP-- 66 Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAE----------PFWVFMRNNTREKDLSLF--MDM 151 +G + N+Q E + VA + ++ + + +S F + Sbjct: 67 -----VGTEIYYNSQ-NENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQK 120 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 +SS N +I +D+I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GM Sbjct: 121 VNSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGM 180 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MM+ P IS P K+I FV +DGW++L + L+ + Sbjct: 181 MMMSPVIISTPIKLILFVAMDGWTMLSKGLILQY 214 >gi|218696459|ref|YP_002404126.1| surface presentation of antigens protein SpaP [Escherichia coli 55989] gi|218353191|emb|CAU99085.1| putative type III secretion system protein EpaP [Escherichia coli 55989] Length = 221 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 121/214 (56%), Gaps = 20/214 (9%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 I T+ ++ P ++ T F +F IVF I+R +G+ VP N+ + +AL ++ +VM P Sbjct: 9 AILTLFTLLPFIIASGTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMP-- 66 Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAE----------PFWVFMRNNTREKDLSLF--MDM 151 +G + N+Q E + VA + ++ + + +S F + Sbjct: 67 -----VGTEIYYNSQ-NENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQK 120 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 +SS N +I +D+I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GM Sbjct: 121 VNSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGM 180 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MM+ P IS P K+I FV +DGW++L + L+ + Sbjct: 181 MMMSPVIISTPIKLILFVAMDGWTMLSKGLILQY 214 >gi|30261770|ref|NP_844147.1| flagellar biosynthesis protein FliP [Bacillus anthracis str. Ames] gi|47527003|ref|YP_018352.1| flagellar biosynthesis protein FliP [Bacillus anthracis str. 'Ames Ancestor'] gi|49184604|ref|YP_027856.1| flagellar biosynthesis protein FliP [Bacillus anthracis str. Sterne] gi|65319047|ref|ZP_00392006.1| COG1338: Flagellar biosynthesis pathway, component FliP [Bacillus anthracis str. A2012] gi|165869274|ref|ZP_02213933.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis str. A0488] gi|167638785|ref|ZP_02397060.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis str. A0193] gi|170706438|ref|ZP_02896898.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis str. A0389] gi|177650630|ref|ZP_02933597.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis str. A0174] gi|190566255|ref|ZP_03019173.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis Tsiankovskii-I] gi|227815461|ref|YP_002815470.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis str. CDC 684] gi|229600042|ref|YP_002866159.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis str. A0248] gi|254734621|ref|ZP_05192333.1| flagellar biosynthesis protein FliP [Bacillus anthracis str. Western North America USA6153] gi|254755273|ref|ZP_05207307.1| flagellar biosynthesis protein FliP [Bacillus anthracis str. Vollum] gi|254759809|ref|ZP_05211833.1| flagellar biosynthesis protein FliP [Bacillus anthracis str. Australia 94] gi|30255998|gb|AAP25633.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis str. Ames] gi|47502151|gb|AAT30827.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis str. 'Ames Ancestor'] gi|49178531|gb|AAT53907.1| flagellar biosynthetic protein FliP, putative [Bacillus anthracis str. Sterne] gi|164714714|gb|EDR20232.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis str. A0488] gi|167513249|gb|EDR88620.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis str. A0193] gi|170128536|gb|EDS97403.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis str. A0389] gi|172083774|gb|EDT68834.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis str. A0174] gi|190562390|gb|EDV16357.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis Tsiankovskii-I] gi|227003763|gb|ACP13506.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis str. CDC 684] gi|229264450|gb|ACQ46087.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis str. A0248] Length = 252 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 110/186 (59%), Gaps = 6/186 (3%) Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F F+IV I R G+G+ ++PPN V++ LALF++ + M P L + P+ +I Sbjct: 70 THFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKI 129 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMI 178 T + A + A +M +T + DL + + + R ++ K+ + L+PSF + Sbjct: 130 TVSQAAETTAPIMKEYMSKHTYKHDLKMMLKV-----RGEELPKDLKDLSLFTLVPSFTL 184 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 +++++ G I L F+ ID+I++T++M +GMMM+PP +SLPFK++ FV + G++ +V Sbjct: 185 TQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILIFVYLGGYTKIV 244 Query: 239 ENLVKS 244 + + K+ Sbjct: 245 DIMFKT 250 >gi|123443727|ref|YP_001007698.1| surface presentation of antigens protein SpaP [Yersinia enterocolitica subsp. enterocolitica 8081] gi|15088594|gb|AAK84105.1|AF369954_3 YsaR [Yersinia enterocolitica] gi|122090688|emb|CAL13564.1| type III secretion apparatus protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 224 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 59/206 (28%), Positives = 116/206 (56%), Gaps = 14/206 (6%) Query: 50 SIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEM 109 S+ P ++ TC+ + IV ++R MG+ VP L + +AL ++ +VM P + Sbjct: 19 SLLPFVIAAGTCYLKISIVLIMVRNAMGVQQVPSGLALNGIALLLSLFVMMPVIQD---- 74 Query: 110 GIQPLMNNQITETTAIQRVAE-------PFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT 162 + M + + + + V + + +++ + + L+ F + + Sbjct: 75 -VNHYMRTEKVDFSNVDSVDKFIDGGLGSYTAYLKKYSDPELLNFFESLQQGRSEEESMA 133 Query: 163 KNDHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220 + D E + L+P++ +SE++ +FEIGF I LPF++ID+I+++I++A+GMMM+ P +IS Sbjct: 134 EADTREPALFSLLPAYALSEIKSAFEIGFYIYLPFVVIDLIISSILLALGMMMMSPVTIS 193 Query: 221 LPFKVIFFVLIDGWSLLVENLVKSFI 246 +P K+I FV IDGW+L+ + L+ ++ Sbjct: 194 VPVKLILFVAIDGWALISKGLIMQYM 219 >gi|42780859|ref|NP_978106.1| flagellar biosynthesis protein FliP [Bacillus cereus ATCC 10987] gi|49477322|ref|YP_035885.1| flagellar biosynthesis protein FliP [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52143691|ref|YP_083136.1| flagellar biosynthesis protein FliP [Bacillus cereus E33L] gi|167633258|ref|ZP_02391583.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis str. A0442] gi|170686220|ref|ZP_02877442.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis str. A0465] gi|196033278|ref|ZP_03100690.1| putative flagellar biosynthetic protein FliP [Bacillus cereus W] gi|196039146|ref|ZP_03106453.1| putative flagellar biosynthetic protein FliP [Bacillus cereus NVH0597-99] gi|196045067|ref|ZP_03112300.1| putative flagellar biosynthetic protein FliP [Bacillus cereus 03BB108] gi|206974770|ref|ZP_03235685.1| putative flagellar biosynthetic protein FliP [Bacillus cereus H3081.97] gi|217959249|ref|YP_002337797.1| flagellar biosynthesis protein FliP [Bacillus cereus AH187] gi|218902880|ref|YP_002450714.1| putative flagellar biosynthetic protein FliP [Bacillus cereus AH820] gi|254683268|ref|ZP_05147129.1| flagellar biosynthesis protein FliP [Bacillus anthracis str. CNEVA-9066] gi|254723851|ref|ZP_05185637.1| flagellar biosynthesis protein FliP [Bacillus anthracis str. A1055] gi|254741030|ref|ZP_05198718.1| flagellar biosynthesis protein FliP [Bacillus anthracis str. Kruger B] gi|300117310|ref|ZP_07055100.1| flagellar biosynthesis protein FliP [Bacillus cereus SJ1] gi|42736779|gb|AAS40714.1| flagellar biosynthetic protein FliP, putative [Bacillus cereus ATCC 10987] gi|49328878|gb|AAT59524.1| flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51977160|gb|AAU18710.1| flagellar biosynthetic protein P [Bacillus cereus E33L] gi|167531296|gb|EDR93974.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis str. A0442] gi|170669917|gb|EDT20658.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis str. A0465] gi|195993712|gb|EDX57668.1| putative flagellar biosynthetic protein FliP [Bacillus cereus W] gi|196024069|gb|EDX62743.1| putative flagellar biosynthetic protein FliP [Bacillus cereus 03BB108] gi|196030291|gb|EDX68891.1| putative flagellar biosynthetic protein FliP [Bacillus cereus NVH0597-99] gi|206746789|gb|EDZ58181.1| putative flagellar biosynthetic protein FliP [Bacillus cereus H3081.97] gi|217065617|gb|ACJ79867.1| putative flagellar biosynthetic protein FliP [Bacillus cereus AH187] gi|218539563|gb|ACK91961.1| putative flagellar biosynthetic protein FliP [Bacillus cereus AH820] gi|298725145|gb|EFI65797.1| flagellar biosynthesis protein FliP [Bacillus cereus SJ1] gi|324325784|gb|ADY21044.1| flagellar biosynthesis protein FliP [Bacillus thuringiensis serovar finitimus YBT-020] Length = 252 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 110/186 (59%), Gaps = 6/186 (3%) Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F F+IV I R G+G+ ++PPN V++ LALF++ + M P L + P+ +I Sbjct: 70 THFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKI 129 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMI 178 T + A + A +M +T + DL + + + R ++ K+ + L+PSF + Sbjct: 130 TVSQAAETTAPIMKEYMSKHTYKHDLKMMLKV-----RGEELPKDLKDLSLFTLVPSFTL 184 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 +++++ G I L F+ ID+I++T++M +GMMM+PP +SLPFK++ FV + G++ +V Sbjct: 185 TQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIV 244 Query: 239 ENLVKS 244 + + K+ Sbjct: 245 DIMFKT 250 >gi|301053304|ref|YP_003791515.1| flagellar biosynthesis protein [Bacillus anthracis CI] gi|300375473|gb|ADK04377.1| flagellar biosynthesis protein [Bacillus cereus biovar anthracis str. CI] Length = 252 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 110/186 (59%), Gaps = 6/186 (3%) Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F F+IV I R G+G+ ++PPN V++ LALF++ + M P L + P+ +I Sbjct: 70 THFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKI 129 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMI 178 T + A + A +M +T + DL + + + R ++ K+ + L+PSF + Sbjct: 130 TVSQAAETTAPIMKEYMSKHTYKHDLKMMLKV-----RGEELPKDLKDLSLFTLVPSFTL 184 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 +++++ G I L F+ ID+I++T++M +GMMM+PP +SLPFK++ FV + G++ +V Sbjct: 185 TQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIV 244 Query: 239 ENLVKS 244 + + K+ Sbjct: 245 DIMFKT 250 >gi|30019811|ref|NP_831442.1| flagellar biosynthesis protein FliP [Bacillus cereus ATCC 14579] gi|75763363|ref|ZP_00743101.1| Flagellar biosynthetic protein fliP [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|118477199|ref|YP_894350.1| flagellar biosynthesis protein FliP [Bacillus thuringiensis str. Al Hakam] gi|218235808|ref|YP_002366451.1| flagellar biosynthesis protein FliP [Bacillus cereus B4264] gi|218896700|ref|YP_002445111.1| putative flagellar biosynthetic protein FliP [Bacillus cereus G9842] gi|225863624|ref|YP_002749002.1| putative flagellar biosynthetic protein FliP [Bacillus cereus 03BB102] gi|296502367|ref|YP_003664067.1| flagellar biosynthesis protein FliP [Bacillus thuringiensis BMB171] gi|29895356|gb|AAP08643.1| Flagellar biosynthetic protein fliP [Bacillus cereus ATCC 14579] gi|74489154|gb|EAO52632.1| Flagellar biosynthetic protein fliP [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|118416424|gb|ABK84843.1| flagellar biosynthetic protein P [Bacillus thuringiensis str. Al Hakam] gi|218163765|gb|ACK63757.1| putative flagellar biosynthetic protein FliP [Bacillus cereus B4264] gi|218545099|gb|ACK97493.1| putative flagellar biosynthetic protein FliP [Bacillus cereus G9842] gi|225787593|gb|ACO27810.1| putative flagellar biosynthetic protein FliP [Bacillus cereus 03BB102] gi|296323419|gb|ADH06347.1| flagellar biosynthesis protein FliP [Bacillus thuringiensis BMB171] gi|326939379|gb|AEA15275.1| flagellar biosynthesis protein FliP [Bacillus thuringiensis serovar chinensis CT-43] Length = 252 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 110/186 (59%), Gaps = 6/186 (3%) Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F F+IV I R G+G+ ++PPN V++ LALF++ + M P L + P+ +I Sbjct: 70 THFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKI 129 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMI 178 T + A + A +M +T + DL + + + R ++ K+ + L+PSF + Sbjct: 130 TVSQAAETTAPIMKEYMSKHTYKHDLKMMLKV-----RGEELPKDLKDLSLFTLVPSFTL 184 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 +++++ G I L F+ ID+I++T++M +GMMM+PP +SLPFK++ FV + G++ +V Sbjct: 185 TQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIV 244 Query: 239 ENLVKS 244 + + K+ Sbjct: 245 DIMFKT 250 >gi|206970774|ref|ZP_03231726.1| putative flagellar biosynthetic protein FliP [Bacillus cereus AH1134] gi|206734410|gb|EDZ51580.1| putative flagellar biosynthetic protein FliP [Bacillus cereus AH1134] Length = 252 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 110/186 (59%), Gaps = 6/186 (3%) Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F F+IV I R G+G+ ++PPN V++ LALF++ + M P L + P+ +I Sbjct: 70 THFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKI 129 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMI 178 T + A + A +M +T + DL + + + R ++ K+ + L+PSF + Sbjct: 130 TVSQAAETTAPIMKEYMSKHTYKHDLKMMLKV-----RGEELPKDLKDLSLFTLVPSFTL 184 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 +++++ G I L F+ ID+I++T++M +GMMM+PP +SLPFK++ FV + G++ +V Sbjct: 185 TQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIV 244 Query: 239 ENLVKS 244 + + K+ Sbjct: 245 DIMFKT 250 >gi|47565435|ref|ZP_00236476.1| flagellar biosynthetic protein fliP [Bacillus cereus G9241] gi|47557425|gb|EAL15752.1| flagellar biosynthetic protein fliP [Bacillus cereus G9241] Length = 252 Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 110/186 (59%), Gaps = 6/186 (3%) Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F F+IV I R G+G+ ++PPN V++ LALF++ + M P L + P+ +I Sbjct: 70 THFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKTDVWDPMTKEKI 129 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMI 178 T + A + A +M +T + DL + + + R ++ K+ + L+PSF + Sbjct: 130 TVSQAAETTAPIMKEYMSKHTYKHDLKMMLKV-----RGEELPKDLKDLSLFTLVPSFTL 184 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 +++++ G I L F+ ID+I++T++M +GMMM+PP +SLPFK++ FV + G++ +V Sbjct: 185 TQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIV 244 Query: 239 ENLVKS 244 + + K+ Sbjct: 245 DIMFKT 250 >gi|254830333|ref|ZP_05234988.1| flagellar biosynthesis protein FliP [Listeria monocytogenes 10403S] Length = 255 Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 59/198 (29%), Positives = 113/198 (57%), Gaps = 4/198 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V F + T+LS++ +++M T F IIV + R G+G ++PPN V++ LALF++ ++M Sbjct: 52 VALFVLVTVLSLSASIVLMFTHFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMM 111 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P + + +P + + + ++ NT + D+++ + + Sbjct: 112 QPLITAWYDDVYKPSQKEEWSASKVWDETQPLLTKYVAENTYKHDINMML----KAEGED 167 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 +T + L+P+F+++++ + F G I L F+ ID+IV+T++M +GMMM+PP +I Sbjct: 168 PVTNKEDAPLMALMPAFILTQITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTI 227 Query: 220 SLPFKVIFFVLIDGWSLL 237 SLPFK++ F+ I G+ L+ Sbjct: 228 SLPFKILVFIFIGGYGLI 245 >gi|163939576|ref|YP_001644460.1| flagellar biosynthesis protein FliP [Bacillus weihenstephanensis KBAB4] gi|163861773|gb|ABY42832.1| Triacylglycerol lipase [Bacillus weihenstephanensis KBAB4] Length = 252 Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 110/186 (59%), Gaps = 6/186 (3%) Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F F+IV I R G+G+ ++PPN V++ LALF++ + M P L + P+ +I Sbjct: 70 THFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKI 129 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMI 178 T + A + A +M +T + DL + + + R ++ K+ + L+PSF + Sbjct: 130 TVSQAAETTAPIMKDYMSKHTYKHDLKMMLKV-----RGEELPKDLKDLSLFTLVPSFTL 184 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 +++++ G I L F+ ID+I++T++M +GMMM+PP +SLPFK++ FV + G++ +V Sbjct: 185 TQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIV 244 Query: 239 ENLVKS 244 + + K+ Sbjct: 245 DIMFKT 250 >gi|53716462|ref|YP_106126.1| surface presentation of antigens protein SpaP [Burkholderia mallei ATCC 23344] gi|53722558|ref|YP_111543.1| surface presentation of antigens protein SpaP [Burkholderia pseudomallei K96243] gi|67641437|ref|ZP_00440216.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia mallei GB8 horse 4] gi|76819720|ref|YP_335736.1| surface presentation of antigens protein SpaP [Burkholderia pseudomallei 1710b] gi|124382629|ref|YP_001025864.1| surface presentation of antigens protein SpaP [Burkholderia mallei NCTC 10229] gi|126442644|ref|YP_001063161.1| surface presentation of antigens protein SpaP [Burkholderia pseudomallei 668] gi|126447432|ref|YP_001077949.1| surface presentation of antigens protein SpaP [Burkholderia mallei NCTC 10247] gi|126458099|ref|YP_001076112.1| surface presentation of antigens protein SpaP [Burkholderia pseudomallei 1106a] gi|167004216|ref|ZP_02269983.1| type III secretion system protein BsaW [Burkholderia mallei PRL-20] gi|167724226|ref|ZP_02407462.1| surface presentation of antigens protein SpaP [Burkholderia pseudomallei DM98] gi|167743201|ref|ZP_02415975.1| surface presentation of antigens protein SpaP [Burkholderia pseudomallei 14] gi|167820375|ref|ZP_02452055.1| surface presentation of antigens protein SpaP [Burkholderia pseudomallei 91] gi|167828747|ref|ZP_02460218.1| surface presentation of antigens protein SpaP [Burkholderia pseudomallei 9] gi|167850202|ref|ZP_02475710.1| surface presentation of antigens protein SpaP [Burkholderia pseudomallei B7210] gi|167898809|ref|ZP_02486210.1| surface presentation of antigens protein SpaP [Burkholderia pseudomallei 7894] gi|167907137|ref|ZP_02494342.1| surface presentation of antigens protein SpaP [Burkholderia pseudomallei NCTC 13177] gi|167915491|ref|ZP_02502582.1| surface presentation of antigens protein SpaP [Burkholderia pseudomallei 112] gi|167923336|ref|ZP_02510427.1| surface presentation of antigens protein SpaP [Burkholderia pseudomallei BCC215] gi|217425211|ref|ZP_03456706.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 576] gi|226196071|ref|ZP_03791657.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei Pakistan 9] gi|237509960|ref|ZP_04522675.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei MSHR346] gi|242313875|ref|ZP_04812892.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 1106b] gi|254176249|ref|ZP_04882907.1| type III secretion system protein BsaW [Burkholderia mallei ATCC 10399] gi|254186856|ref|ZP_04893372.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei Pasteur 52237] gi|254193764|ref|ZP_04900196.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei S13] gi|254200992|ref|ZP_04907357.1| type III secretion system protein BsaW [Burkholderia mallei FMH] gi|254204956|ref|ZP_04911309.1| type III secretion system protein BsaW [Burkholderia mallei JHU] gi|254265439|ref|ZP_04956304.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 1710a] gi|254301456|ref|ZP_04968900.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 406e] gi|254359075|ref|ZP_04975347.1| type III secretion system protein BsaW [Burkholderia mallei 2002721280] gi|52212972|emb|CAH39010.1| surface presentation of antigens protein [Burkholderia pseudomallei K96243] gi|52422432|gb|AAU46002.1| type III secretion system protein BsaW [Burkholderia mallei ATCC 23344] gi|76584193|gb|ABA53667.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 1710b] gi|126222135|gb|ABN85640.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 668] gi|126231867|gb|ABN95280.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 1106a] gi|126240286|gb|ABO03398.1| type III secretion system protein BsaW [Burkholderia mallei NCTC 10247] gi|147748604|gb|EDK55679.1| type III secretion system protein BsaW [Burkholderia mallei FMH] gi|147754542|gb|EDK61606.1| type III secretion system protein BsaW [Burkholderia mallei JHU] gi|148028262|gb|EDK86222.1| type III secretion system protein BsaW [Burkholderia mallei 2002721280] gi|157811160|gb|EDO88330.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 406e] gi|157934540|gb|EDO90210.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei Pasteur 52237] gi|160697291|gb|EDP87261.1| type III secretion system protein BsaW [Burkholderia mallei ATCC 10399] gi|169650515|gb|EDS83208.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei S13] gi|217391816|gb|EEC31843.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 576] gi|225931964|gb|EEH27965.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei Pakistan 9] gi|235002165|gb|EEP51589.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei MSHR346] gi|238522377|gb|EEP85822.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia mallei GB8 horse 4] gi|242137114|gb|EES23517.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 1106b] gi|243060411|gb|EES42597.1| type III secretion system protein BsaW [Burkholderia mallei PRL-20] gi|254216441|gb|EET05826.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 1710a] gi|261826900|gb|ABM99812.2| type III secretion system protein BsaW [Burkholderia mallei NCTC 10229] Length = 226 Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 63/214 (29%), Positives = 124/214 (57%), Gaps = 14/214 (6%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T ++ P ++ +CF +F IV ++R +G+ VP NL + S+AL M+ +VM P Sbjct: 11 LLTAATLVPFVVAAGSCFIKFSIVLVLVRNALGIQQVPSNLALNSIALIMSLFVMMPVAQ 70 Query: 105 RSIE-MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL--FMDMAHSSHRNTDI 161 + + PL + ++ + + + + R TR D L F + A ++ D Sbjct: 71 SAYRYLQHHPL--DVMSGASVNEFIDGGLGDYKRYLTRYSDPELVRFFERAQTARLKGDD 128 Query: 162 TKN-------DHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 D ++ + L+P++ ++E++ +F+IGF + LPFL++DM+V+++++A+GMM Sbjct: 129 ADAADADDAPDGLDNSLFSLLPAYALTEIKSAFKIGFYLYLPFLVVDMVVSSVLLALGMM 188 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 M+ P +IS+P K+I FV +DGW+L+ + L++ ++ Sbjct: 189 MMSPVTISVPIKLILFVAMDGWTLICKGLIEQYL 222 >gi|11276516|gb|AAG33884.1| HrcR [Pseudomonas syringae pv. tomato] Length = 208 Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 72/209 (34%), Positives = 121/209 (57%), Gaps = 20/209 (9%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL----- 103 +S+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +VM+P Sbjct: 9 MSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVAHEMQQ 68 Query: 104 ---DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHR 157 D +E+G N + + +A + V EP FM NT ++ +D Sbjct: 69 RVHDHPLELG-----NTEKLQASA-RTVIEPLQRFMTRNTDPDVVAHLLDNTQRMWPKEM 122 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 +KND + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P Sbjct: 123 ADQASKNDLL---LAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPM 179 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246 ++SLP K++ FV++ GWS L+++L S++ Sbjct: 180 TLSLPLKLLLFVMVSGWSRLLDSLFYSYM 208 >gi|207109546|ref|ZP_03243708.1| flagellar biosynthesis protein FliP [Helicobacter pylori HPKX_438_CA4C1] Length = 99 Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 54/90 (60%), Positives = 73/90 (81%), Gaps = 1/90 (1%) Query: 157 RNTDITKN-DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215 RN K D + +LIP+FMISEL+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLP Sbjct: 7 RNLPNPKTPDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLP 66 Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 P ISLPFK++ F+L+DG++LL ENLV SF Sbjct: 67 PVMISLPFKILVFILVDGFNLLTENLVASF 96 >gi|301381807|ref|ZP_07230225.1| type III secretion system protein [Pseudomonas syringae pv. tomato Max13] gi|302061998|ref|ZP_07253539.1| type III secretion system protein [Pseudomonas syringae pv. tomato K40] gi|302135080|ref|ZP_07261070.1| type III secretion system protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|330872918|gb|EGH07067.1| type III secretion system protein YscR [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330963055|gb|EGH63315.1| type III secretion system protein YscR [Pseudomonas syringae pv. actinidiae str. M302091] gi|331015103|gb|EGH95159.1| type III secretion system protein YscR [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 217 Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 72/209 (34%), Positives = 121/209 (57%), Gaps = 20/209 (9%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL----- 103 +S+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +VM+P Sbjct: 18 MSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVAHEMQQ 77 Query: 104 ---DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHR 157 D +E+G N + + +A + V EP FM NT ++ +D Sbjct: 78 RVHDHPLELG-----NTEKLQASA-RTVIEPLQRFMTRNTDPDVVAHLLDNTQRMWPKEM 131 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 +KND + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P Sbjct: 132 ADQASKNDLL---LAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPM 188 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246 ++SLP K++ FV++ GWS L+++L S++ Sbjct: 189 TLSLPLKLLLFVMVSGWSRLLDSLFYSYM 217 >gi|323166471|gb|EFZ52235.1| surface presentation of antigens protein spaP [Shigella sonnei 53G] Length = 181 Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 56/184 (30%), Positives = 111/184 (60%), Gaps = 15/184 (8%) Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN--NQITETTAIQRV 128 ++R +G+ VP N+ + +AL M +VM P IE G + +N + + I R Sbjct: 1 MVRNALGLQQVPSNMTLNGIALIMALFVMKPI----IEAGYENYLNGPQKFDTISDIVRF 56 Query: 129 AE----PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI--LIPSFMISELR 182 ++ + +++ +T DL L S N D+ ++ +Y + L+P++ +SE++ Sbjct: 57 SDSGLMEYKQYLKKHT---DLELARFFQRSEEENADLKSAENNDYSLFSLLPAYALSEIK 113 Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242 +F+IGF + LPF+++D+++++I++A+GMMM+ P +IS+P K++ FV +DGW +L + L+ Sbjct: 114 DAFKIGFYLYLPFVVVDLVISSILLALGMMMMSPITISVPIKLVLFVALDGWGILSKALI 173 Query: 243 KSFI 246 + +I Sbjct: 174 EQYI 177 >gi|238759389|ref|ZP_04620554.1| Surface presentation of antigens protein spaP [Yersinia aldovae ATCC 35236] gi|238702416|gb|EEP94968.1| Surface presentation of antigens protein spaP [Yersinia aldovae ATCC 35236] Length = 223 Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 63/228 (27%), Positives = 122/228 (53%), Gaps = 21/228 (9%) Query: 28 NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87 IP D+ + I ++ P ++ TC+ + IV ++R MG+ VP +L + Sbjct: 3 TIPGDIPL-------LAIIAFSTLLPFIIAAGTCYLKISIVLIMVRNAMGVQQVPSSLTL 55 Query: 88 ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE-------PFWVFMRNNT 140 +AL ++ +VM P + + M + + + + V + +++ + Sbjct: 56 NGIALLLSLFVMMPVIQD-----VNQYMRTEQVDFSNVDSVDNFVEGGLGSYKAYLKKYS 110 Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRI--LIPSFMISELRRSFEIGFLIILPFLII 198 + L+ F + + + D E + L+P++ +SE++ +FEIGF I LPF++I Sbjct: 111 DPELLNFFESLQQGRSEEQAMDEADTREPTLFSLLPAYALSEIKSAFEIGFYIYLPFVVI 170 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 D+I+++I++A+GMMM+ P +IS+P K+I FV IDGWSL+ + L+ ++ Sbjct: 171 DLIISSILLALGMMMMSPVTISVPVKLILFVAIDGWSLISKGLIMQYM 218 >gi|162533077|ref|NP_791222.3| type III secretion protein HrcR [Pseudomonas syringae pv. tomato str. DC3000] gi|213968264|ref|ZP_03396408.1| type III secretion protein HrcR [Pseudomonas syringae pv. tomato T1] gi|28851841|gb|AAO54917.1| type III secretion protein HrcR [Pseudomonas syringae pv. tomato str. DC3000] gi|213926902|gb|EEB60453.1| type III secretion protein HrcR [Pseudomonas syringae pv. tomato T1] Length = 200 Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 72/209 (34%), Positives = 121/209 (57%), Gaps = 20/209 (9%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL----- 103 +S+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +VM+P Sbjct: 1 MSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVAHEMQQ 60 Query: 104 ---DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHR 157 D +E+G N + + +A + V EP FM NT ++ +D Sbjct: 61 RVHDHPLELG-----NTEKLQASA-RTVIEPLQRFMTRNTDPDVVAHLLDNTQRMWPKEM 114 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 +KND + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P Sbjct: 115 ADQASKNDLL---LAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPM 171 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246 ++SLP K++ FV++ GWS L+++L S++ Sbjct: 172 TLSLPLKLLLFVMVSGWSRLLDSLFYSYM 200 >gi|256024631|ref|ZP_05438496.1| surface presentation of antigens protein SpaP [Escherichia sp. 4_1_40B] gi|300950614|ref|ZP_07164516.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 116-1] gi|300958195|ref|ZP_07170349.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 175-1] gi|301026123|ref|ZP_07189597.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 196-1] gi|301643799|ref|ZP_07243836.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 146-1] gi|307139550|ref|ZP_07498906.1| surface presentation of antigens protein SpaP [Escherichia coli H736] gi|62085079|gb|AAX62943.1| type III secretion apparatus protein [Escherichia coli] gi|299879818|gb|EFI88029.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 196-1] gi|300315147|gb|EFJ64931.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 175-1] gi|300450094|gb|EFK13714.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 116-1] gi|301077832|gb|EFK92638.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 146-1] gi|323941617|gb|EGB37797.1| YscR/HrcR family protein type III secretion lipoprotein [Escherichia coli E482] Length = 221 Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 121/207 (58%), Gaps = 6/207 (2%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 I ++ ++ P ++ T F +F IVF I+R +G+ VP N+ + +AL ++ +VM P + Sbjct: 9 AILSLFTLLPFIIASGTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMP-V 67 Query: 104 DRSIEMGIQP---LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF--MDMAHSSHRN 158 + I Q NN + ++ + ++ + + ++ F + +SS N Sbjct: 68 GKEIYYNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVNFFEKIQKVNSSEDN 127 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 +I +D+I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMMM+ P + Sbjct: 128 EEIFDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMMMMSPVT 187 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 IS P K+I FV +DGW++L + L+ + Sbjct: 188 ISTPIKLILFVAMDGWTMLSKGLILQY 214 >gi|222095389|ref|YP_002529449.1| flagellar biosynthesis protein flip [Bacillus cereus Q1] gi|221239447|gb|ACM12157.1| flagellar biosynthetic protein FliP [Bacillus cereus Q1] Length = 252 Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 110/186 (59%), Gaps = 6/186 (3%) Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F F+IV I R G+G+ ++PPN V++ LALF++ + M P L + P+ +I Sbjct: 70 THFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKI 129 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMI 178 T + A + A +M +T + DL + + + R ++ K+ + L+PSF + Sbjct: 130 TVSQAAETTAPIMKEYMSKHTYKHDLKMMLKV-----RGEELPKDLKDLSLFTLVPSFTL 184 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 +++++ G I L F+ ID+I++T++M +GM+M+PP +SLPFK++ FV + G++ +V Sbjct: 185 TQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMLMVPPMILSLPFKILVFVYLGGYTKIV 244 Query: 239 ENLVKS 244 + + K+ Sbjct: 245 DIMFKT 250 >gi|167573308|ref|ZP_02366182.1| surface presentation of antigens protein SpaP [Burkholderia oklahomensis C6786] Length = 229 Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 64/217 (29%), Positives = 122/217 (56%), Gaps = 17/217 (7%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T ++ P ++ +CF +F IV ++R +G+ VP NL + S+AL M+ +VM P Sbjct: 11 LLTAATLVPFVVAAGSCFIKFSIVLVLVRNALGIQQVPSNLALNSIALIMSLFVMMPVAQ 70 Query: 105 RSIE-MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL--FMDMAHSSHRN--- 158 + + PL + + T+ + + R TR D L F + A +S Sbjct: 71 SAYRYLQHHPL--DVMNGTSVNDFIDGGLGDYKRYLTRYSDPELVRFFERAQASRLKGDD 128 Query: 159 -------TDITKNDHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 + D + + L+P++ ++E++ +F+IGF + LPFL++DM+V+++++A+ Sbjct: 129 ADAADADVAGDEPDGFDNSLFTLLPAYALTEIKSAFKIGFYLYLPFLVVDMVVSSVLLAL 188 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 GMMM+ P +IS+P K+I FV +DGW+L+ + L++ ++ Sbjct: 189 GMMMMSPVTISVPIKLILFVAMDGWTLISKGLIEQYL 225 >gi|170018891|ref|YP_001723845.1| surface presentation of antigens protein SpaP [Escherichia coli ATCC 8739] gi|169753819|gb|ACA76518.1| Yop virulence translocation R [Escherichia coli ATCC 8739] Length = 221 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 121/207 (58%), Gaps = 6/207 (2%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 I ++ ++ P ++ T F +F IVF I+R +G+ VP N+ + +AL ++ +VM P + Sbjct: 9 AILSLFTLLPFIIASGTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMP-V 67 Query: 104 DRSIEMGIQPL---MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF--MDMAHSSHRN 158 + I Q NN + ++ + ++ + + ++ F + +SS N Sbjct: 68 GKEIYYNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVNFFEKIQKVNSSEDN 127 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 +I +D+I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMMM+ P + Sbjct: 128 EEIFDDDNIPIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMMMMSPVT 187 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 IS P K+I FV +DGW++L + L+ + Sbjct: 188 ISTPIKLILFVAMDGWTMLSKGLILQY 214 >gi|134282034|ref|ZP_01768740.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 305] gi|134246563|gb|EBA46651.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 305] Length = 226 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 62/214 (28%), Positives = 123/214 (57%), Gaps = 14/214 (6%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T ++ P ++ +CF +F IV ++R +G+ VP NL + S+AL M+ +VM P Sbjct: 11 LLTAATLVPFVVAAGSCFIKFSIVLVLVRNALGIQQVPSNLALNSIALIMSLFVMMPVAQ 70 Query: 105 RSIE-MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL--FMDMAHSSHRNTDI 161 + + PL + ++ + + + + R R D L F + A ++ D Sbjct: 71 SAYRYLQHHPL--DVMSGASVNEFIDGGLGDYKRYLARYSDPELVRFFERAQTARLKGDD 128 Query: 162 TKN-------DHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 D ++ + L+P++ ++E++ +F+IGF + LPFL++DM+V+++++A+GMM Sbjct: 129 ADAADADDAPDGLDNSLFSLLPAYALTEIKSAFKIGFYLYLPFLVVDMVVSSVLLALGMM 188 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 M+ P +IS+P K+I FV +DGW+L+ + L++ ++ Sbjct: 189 MMSPVTISVPIKLILFVAMDGWTLICKGLIEQYL 222 >gi|167840168|ref|ZP_02466852.1| surface presentation of antigens protein SpaP [Burkholderia thailandensis MSMB43] Length = 229 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 122/212 (57%), Gaps = 17/212 (8%) Query: 50 SIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE- 108 ++ P ++ +CF +F IV ++R +G+ VP NL + S+AL M+ +VM P + Sbjct: 16 TLVPFVVAAGSCFIKFSIVLVLVRNALGIQQVPSNLALNSIALIMSLFVMMPVAQSAYRY 75 Query: 109 MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL--FMDMAHSSHRNTDITKN-- 164 + PL + + + + + R TR D +L F + A ++ +D Sbjct: 76 LQHHPL--DVMNGASVNDFIDGGLGGYKRYLTRYSDPALVRFFERAQAARLKSDDADAAD 133 Query: 165 --------DHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214 D ++ + L+P++ ++E++ +F+IGF + LPFL++DM+V+++++A+GMMM+ Sbjct: 134 ADVAGDGPDGLDNSLFSLLPAYALTEIKSAFKIGFYLYLPFLVVDMVVSSVLLALGMMMM 193 Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 P +IS+P K+I FV +DGW+L+ + L++ ++ Sbjct: 194 SPVTISVPIKLILFVAMDGWTLICKGLIEQYL 225 >gi|157162320|ref|YP_001459638.1| surface presentation of antigens protein SpaP [Escherichia coli HS] gi|157068000|gb|ABV07255.1| type III secretion apparatus protein EpaP [Escherichia coli HS] Length = 221 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 120/207 (57%), Gaps = 6/207 (2%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 I ++ ++ P ++ T F +F IVF I+R +G+ VP N+ + +AL ++ +VM P + Sbjct: 9 AILSLFTLLPFIIASGTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMP-V 67 Query: 104 DRSIEMGIQP---LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF--MDMAHSSHRN 158 + I Q NN + ++ + ++ + + ++ F + +SS N Sbjct: 68 GKEIYYNSQNENLSFNNLASVVNFVETGMSGYKSYLIKYSEPELVNFFEKIQKVNSSEDN 127 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 +I +D+I L+P++ +SE++ +F IGF I LPF+++D++++ +++ +GMMM+ P + Sbjct: 128 EEIFDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISIVLLTLGMMMMSPVT 187 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 IS P K+I FV +DGW++L + L+ + Sbjct: 188 ISTPIKLILFVAMDGWTMLSKGLILQY 214 >gi|83718329|ref|YP_439033.1| surface presentation of antigens protein SpaP [Burkholderia thailandensis E264] gi|167577439|ref|ZP_02370313.1| surface presentation of antigens protein SpaP [Burkholderia thailandensis TXDOH] gi|167615590|ref|ZP_02384225.1| surface presentation of antigens protein SpaP [Burkholderia thailandensis Bt4] gi|257142141|ref|ZP_05590403.1| surface presentation of antigens protein SpaP [Burkholderia thailandensis E264] gi|83652154|gb|ABC36218.1| type III secretion system protein BsaW [Burkholderia thailandensis E264] Length = 230 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 63/218 (28%), Positives = 124/218 (56%), Gaps = 18/218 (8%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T ++ P ++ +CF +F IV ++R +G+ VP NL + S+AL M+ +VM P Sbjct: 11 LLTAATLVPFVVAAGSCFIKFSIVLVLVRNALGIQQVPSNLALNSIALIMSLFVMMPVAQ 70 Query: 105 RSIE-MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL--FMDMAHSSHRNTDI 161 + + PL + + ++ + + R TR D L F + A ++ D Sbjct: 71 SAYRYLQHHPL--DVMNGSSVNDFIDGGLGDYKRYLTRYSDPELVRFFERAQAARLKRDD 128 Query: 162 -----------TKNDHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208 + D ++ + L+P++ ++E++ +F+IGF + LPFL++DM+V+++++A Sbjct: 129 ADAADADADAGDEPDGLDNSLFSLLPAYALTEIKSAFKIGFYLYLPFLVVDMVVSSVLLA 188 Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +GMMM+ P +IS+P K+I FV +DGW+L+ + L++ ++ Sbjct: 189 LGMMMMSPVTISVPIKLILFVAMDGWTLICKGLIEQYL 226 >gi|167566198|ref|ZP_02359114.1| surface presentation of antigens protein SpaP [Burkholderia oklahomensis EO147] Length = 229 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 64/217 (29%), Positives = 123/217 (56%), Gaps = 17/217 (7%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T ++ P ++ +CF +F IV ++R +G+ VP NL + S+AL M+ +VM P Sbjct: 11 LLTAATLVPFVVAAGSCFIKFSIVLVLVRNALGIQQVPSNLALNSIALIMSLFVMMPVAQ 70 Query: 105 RSIE-MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL--FMDMAHSSHRNTDI 161 + + PL + + T+ + + R TR D L F + A ++ D Sbjct: 71 SAYRYLQHHPL--DVMNGTSVNDFIDGGLGDYKRYLTRYSDPELVRFFERAQAARLKGDD 128 Query: 162 T----------KNDHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 + D + + L+P++ ++E++ +F+IGF + LPFL++DM+V+++++A+ Sbjct: 129 ADAADADVAGDEPDGFDNSLFTLLPAYALTEIKSAFKIGFYLYLPFLVVDMVVSSVLLAL 188 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 GMMM+ P +IS+P K+I FV +DGW+L+ + L++ ++ Sbjct: 189 GMMMMSPVTISVPIKLILFVAMDGWTLISKGLIEQYL 225 >gi|170698145|ref|ZP_02889224.1| Yop virulence translocation R [Burkholderia ambifaria IOP40-10] gi|170136910|gb|EDT05159.1| Yop virulence translocation R [Burkholderia ambifaria IOP40-10] Length = 223 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 116/207 (56%), Gaps = 13/207 (6%) Query: 50 SIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEM 109 ++ P ++ TC+ +F IV ++R +G+ VP NLV+ S+AL ++ +VM P R+ Sbjct: 16 TLLPFVIASGTCYVKFSIVLVLVRNALGIQQVPSNLVLNSIALILSLFVMMPVSYRA--Y 73 Query: 110 GIQPLMNNQITETTAIQR-VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI------- 161 G +T + ++ V + R D SL AH+ Sbjct: 74 GYLQTHQVDMTNSQSLHDFVDGGLGDYKHYLERYADPSLVKFFAHAQAPRDADDGAATDD 133 Query: 162 --TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + +H +L+P++ +SE++ +F+IGF + +PFL++D+IV+ +++A+GMMM+ P +I Sbjct: 134 DPSAREH-ALTVLLPAYALSEIKSAFKIGFYLYVPFLVVDLIVSNVLLALGMMMMSPVTI 192 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246 S+P K+I FV +DGW+L+ + L+ ++ Sbjct: 193 SVPIKLILFVAMDGWTLICKGLILQYM 219 >gi|179742375|gb|ACB86738.1| HrcR [uncultured soil bacterium] Length = 155 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 60/157 (38%), Positives = 91/157 (57%), Gaps = 8/157 (5%) Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT-----AIQRVAEP 131 G+ VPPN+V+ LAL M+ YVM P EMG + I +T A EP Sbjct: 2 GVQQVPPNVVLNGLALVMSVYVMYPV---GTEMGARMQGLKDIGGSTQSMLKAADSAKEP 58 Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191 F+ ++R + FM A + + ++ +++P+F +SEL +FEIGFLI Sbjct: 59 LREFLVKHSRPLERGFFMKTAQKALKPEQAATLTDRDFLVIVPAFTVSELSVAFEIGFLI 118 Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 LPFL+ID++++ I+MAMGMMML PT++S+P K++ F Sbjct: 119 FLPFLVIDLVISNILMAMGMMMLSPTTVSMPLKLLLF 155 >gi|254185167|ref|ZP_04891756.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 1655] gi|184215759|gb|EDU12740.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 1655] Length = 226 Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 62/214 (28%), Positives = 123/214 (57%), Gaps = 14/214 (6%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + T ++ P ++ +CF +F IV ++R +G+ VP NL + S+AL M+ +VM P Sbjct: 11 LLTAATLVPFVVAAGSCFIKFSIVLVLVRNALGIQQVPSNLALNSIALIMSLFVMMPIAQ 70 Query: 105 RSIE-MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL--FMDMAHSSHRNTDI 161 + + PL + ++ + + + + R R D L F + A ++ D Sbjct: 71 SAYRYLQHHPL--DVMSGASVNEFIDGGLGDYKRYLARYSDPELVRFFERAQTARLKGDD 128 Query: 162 TKN-------DHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 D ++ + L+P++ ++E++ +F+IGF + LPFL++DM+V+++++A+GMM Sbjct: 129 ADAADADDAPDGLDNSLFSLLPAYALTEIKSAFKIGFYLYLPFLVVDMVVSSVLLALGMM 188 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 M+ P +IS+P K+I FV +DGW+L+ + L++ ++ Sbjct: 189 MMSPVTISVPIKLILFVAMDGWTLICKGLIEQYL 222 >gi|309703222|emb|CBJ02557.1| type III secretion system protein [Escherichia coli ETEC H10407] Length = 221 Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 120/207 (57%), Gaps = 6/207 (2%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 I ++ ++ P ++ T F +F IVF I+R +G+ VP N+ + +AL ++ +VM P + Sbjct: 9 AILSLFTLLPFIIASGTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMP-V 67 Query: 104 DRSIEMGIQP---LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF--MDMAHSSHRN 158 + I Q NN + ++ + ++ + + ++ F + +SS N Sbjct: 68 GKEIYYNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVNFFEKIQKVNSSEDN 127 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 I +D+I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMMM+ P + Sbjct: 128 EVIFDDDNISIISLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMMMMSPVT 187 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 IS P K+I FV +DGW++L + L+ + Sbjct: 188 ISTPIKLILFVAMDGWTMLSKGLILQY 214 >gi|2494567|sp|Q47856|HRCR_PANAY RecName: Full=Harpin secretion protein hrcR gi|1483322|emb|CAA68098.1| HrcR protein [Pantoea agglomerans] Length = 217 Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 73/212 (34%), Positives = 129/212 (60%), Gaps = 15/212 (7%) Query: 42 TFGIF-TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100 TF +F LS+ PIL+I+ TCF + +V I R +G+ VPPN+ + +AL T +VM+ Sbjct: 10 TFALFLGALSLIPILMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMA 69 Query: 101 PTLDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR- 157 P ++ + Q M+N T+I P FM +NT D + + + +S + Sbjct: 70 PVFNQMQQQFSQAPADMSNMDNLKTSITNGVAPLQKFMTHNT---DPDILIHLQENSVKM 126 Query: 158 -----NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 + D++K++ + ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++ +GM Sbjct: 127 WPKPMSDDVSKDNLL---LVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLTLGMQ 183 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 M+ P ++SLP K++ +LI+GW+ L++ L S Sbjct: 184 MVTPMTLSLPLKMLLLILINGWTRLLDGLFYS 215 >gi|229160728|ref|ZP_04288720.1| Flagellar biosynthetic protein FliP [Bacillus cereus R309803] gi|228622743|gb|EEK79577.1| Flagellar biosynthetic protein FliP [Bacillus cereus R309803] Length = 177 Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 107/180 (59%), Gaps = 6/180 (3%) Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 +IV I R G+G+ ++PPN V++ LALF++ + M P L + P+ QIT + A Sbjct: 1 MIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEQITVSQAA 60 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMISELRRS 184 + A +M +T + DL + + + R ++ K+ + L+PSF ++++++ Sbjct: 61 ETTAPIMKDYMSKHTYKHDLKMMLKV-----RGEELPKDLKDLSLFTLVPSFTLTQIQKG 115 Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 G I L F+ ID+I++T++M +GMMM+PP +SLPFK++ FV + G++ +V+ + K+ Sbjct: 116 LLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIVDIMFKT 175 >gi|229096251|ref|ZP_04227224.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock3-29] gi|229102365|ref|ZP_04233073.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock3-28] gi|229115206|ref|ZP_04244616.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock1-3] gi|228668346|gb|EEL23778.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock1-3] gi|228681012|gb|EEL35181.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock3-28] gi|228687211|gb|EEL41116.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock3-29] Length = 177 Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 107/180 (59%), Gaps = 6/180 (3%) Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 +IV I R G+G+ ++PPN V++ LALF++ + M P L + P+ QIT + A Sbjct: 1 MIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEQITVSQAA 60 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMISELRRS 184 + A +M +T + DL + + + R ++ K+ + L+PSF ++++++ Sbjct: 61 ETTAPIMKDYMAKHTYKHDLKMMLKV-----RGEELPKDLKDLSLFTLVPSFTLTQIQKG 115 Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 G I L F+ ID+I++T++M +GMMM+PP +SLPFK++ FV + G++ +V+ + K+ Sbjct: 116 LLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIVDIMFKT 175 >gi|261344591|ref|ZP_05972235.1| type III secretion apparatus protein, YscR/HrcR family [Providencia rustigianii DSM 4541] gi|282567505|gb|EFB73040.1| type III secretion apparatus protein, YscR/HrcR family [Providencia rustigianii DSM 4541] Length = 221 Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 66/205 (32%), Positives = 114/205 (55%), Gaps = 22/205 (10%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P ++ TC+ + IV ++R MG+ VP + + +AL ++ +VM P L Q Sbjct: 21 PFIIAAGTCYLKISIVLIMVRNAMGVQQVPSTMALNGIALLLSIFVMMPIL--------Q 72 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNN-TREKD---------LSLFMDMAHSSHRNTDIT 162 + N+ +E V E F+ N R KD L F + +++ Sbjct: 73 DVNNHMRSERVDFSNV-ESIDNFVDNGLGRYKDYLVKYSDPQLVTFFESVQQGKSEAEVS 131 Query: 163 KNDHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220 + + E + L+P++ +SE++ +FEIGF I LPF++ID+++++I++A+GMMM+ P +IS Sbjct: 132 E-EQAEPTLFSLLPAYALSEIKSAFEIGFYIYLPFVVIDLVISSILLALGMMMMSPVTIS 190 Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245 +P K+I FV IDGWSL+ + LV + Sbjct: 191 VPVKLILFVAIDGWSLISKGLVMQY 215 >gi|188026435|ref|ZP_02962073.2| hypothetical protein PROSTU_04166 [Providencia stuartii ATCC 25827] gi|188019857|gb|EDU57897.1| hypothetical protein PROSTU_04166 [Providencia stuartii ATCC 25827] Length = 227 Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 129/229 (56%), Gaps = 26/229 (11%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 ++SI + + + ++ ++ P ++ TC+ + IV ++R MG+ VP + + +A Sbjct: 6 NMSIVSNEIPMLALVSLATLLPFIIAAGTCYLKISIVLIMVRNAMGVQQVPSTMALNGIA 65 Query: 92 LFMTFYVMSPTL--------DRSIEMG----IQPLMNNQITETTA-IQRVAEPFWVFMRN 138 + ++ +VM P + + ++ G + ++ + A +Q+ ++P V Sbjct: 66 MLLSLFVMMPVVQDISHYMREEKVDFGNVESVDNFVDGGLGRYKAYLQKYSDPELVQFFE 125 Query: 139 NTREKDLSLFMDM-AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197 + +++ MD AHS+ + L+P++ +SE++ +FEIGF I LPF++ Sbjct: 126 SVQQQRNEEPMDAEAHSATLFS------------LLPAYALSEVKSAFEIGFYIYLPFVV 173 Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 ID+++++I++A+GMMM+ P +IS+P K+I FV IDGWSL+ + LV ++ Sbjct: 174 IDLVISSILLALGMMMMSPVTISVPVKLILFVAIDGWSLISKGLVMQYL 222 >gi|229011059|ref|ZP_04168253.1| Flagellar biosynthetic protein FliP [Bacillus mycoides DSM 2048] gi|228750231|gb|EEM00063.1| Flagellar biosynthetic protein FliP [Bacillus mycoides DSM 2048] Length = 177 Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 108/180 (60%), Gaps = 6/180 (3%) Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 +IV I R G+G+ ++PPN V++ LALF++ + M P L + P+ +IT + A Sbjct: 1 MIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKITVSQAA 60 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMISELRRS 184 + A +M +T + DL + + + R ++ K+ + L+PSF ++++++ Sbjct: 61 ETTAPIMKDYMSKHTYKHDLKMMLKV-----RGEELPKDLKDLSLFTLVPSFTLTQIQKG 115 Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 G I L F+ ID+I++T++M +GMMM+PP+ +SLPFK++ FV + G++ +V+ + K+ Sbjct: 116 LLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPSILSLPFKILVFVYLGGYTKIVDIMFKT 175 >gi|51102999|gb|AAT96146.1| HrcR [Pseudomonas viridiflava] Length = 217 Score = 108 bits (270), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 75/212 (35%), Positives = 122/212 (57%), Gaps = 26/212 (12%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL----- 103 LS+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +VM+P Sbjct: 18 LSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVAHDIQQ 77 Query: 104 ---DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR--- 157 D +E+G + T+++ V EP FM TR D + + ++ R Sbjct: 78 RVHDHPLELGSADKLQ------TSLRTVIEPLQRFM---TRNTDPDVVAHLLENTQRMWP 128 Query: 158 ---NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214 TK+D + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ Sbjct: 129 KEMADQATKDDLL---LAIPAFVMSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMV 185 Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 P +ISLP K++ FVL+ GWS L+++L S++ Sbjct: 186 SPMTISLPLKLLLFVLVSGWSRLLDSLFYSYM 217 >gi|85058547|ref|YP_454249.1| surface presentation of antigens protein SpaP [Sodalis glossinidius str. 'morsitans'] gi|45504755|gb|AAS66846.1| YsaR [Sodalis glossinidius] gi|84779067|dbj|BAE73844.1| type III secretion apparatus SpaP [Sodalis glossinidius str. 'morsitans'] Length = 226 Score = 108 bits (270), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 114/206 (55%), Gaps = 11/206 (5%) Query: 50 SIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEM 109 ++ P ++ TC+ +F IV ++R +G+ +P L + +AL +T +VM P ++I Sbjct: 16 TLLPFVIAGGTCYIKFSIVLVMVRNALGIQQIPSTLTLNGIALILTAFVMMPVC-QNISH 74 Query: 110 GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIE- 168 I+ N + +Q V + + R D L + HR + + +E Sbjct: 75 YIETHQTNFNNIDSTMQFVDQGLGSYRDYLVRYSDKKLIRFFCETQHRQSGGEQETDLEC 134 Query: 169 ---------YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 +L+P++ +SE++ +F+I F + +PF++IDM+V++I++A+GMMM+ P +I Sbjct: 135 TEENMSSLSLMMLMPAYALSEVQSAFKIAFFLYVPFVVIDMVVSSILLALGMMMMSPVTI 194 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 S+P K+I FV +DGW+LL + L+ + Sbjct: 195 SIPIKLILFVAMDGWTLLTKGLILQY 220 >gi|227328491|ref|ZP_03832515.1| type III secretion system protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 217 Score = 108 bits (270), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 71/200 (35%), Positives = 121/200 (60%), Gaps = 2/200 (1%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSI 107 LS+ P+++I+ TCF + IV I R +G+ VPPN+ + +AL T +VM+P D S Sbjct: 18 LSLIPLMMIVCTCFLKIAIVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVFQDISK 77 Query: 108 EMGIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 + +PL IT A + EP +FM N L+ + + + K + Sbjct: 78 RVQEKPLDMTDITSLQASVTYGLEPLQMFMSRNVDPDILTHLHENSLQMWPASLSEKVNT 137 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP K++ Sbjct: 138 QNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPLKLL 197 Query: 227 FFVLIDGWSLLVENLVKSFI 246 FVL++GW+ L++ L S++ Sbjct: 198 LFVLVNGWTRLLDGLFYSYL 217 >gi|34500877|gb|AAQ73905.1| HrcR [Pectobacterium carotovorum subsp. carotovorum] Length = 217 Score = 108 bits (270), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 70/200 (35%), Positives = 121/200 (60%), Gaps = 2/200 (1%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSI 107 LS+ P+++I+ TCF + IV I R +G+ VPPN+ + +AL T +VM+P D + Sbjct: 18 LSLIPLMMIVCTCFLKIAIVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVFQDITK 77 Query: 108 EMGIQPLMNNQITE-TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 + +PL IT T++ EP FM N L+ + + + K + Sbjct: 78 RVQEKPLDMTDITSLQTSVTYGLEPLQTFMSRNVDPDILTHLHENSLQMWPASLSEKVNT 137 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP K++ Sbjct: 138 QNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPLKLL 197 Query: 227 FFVLIDGWSLLVENLVKSFI 246 FVL++GW+ L++ L S++ Sbjct: 198 LFVLVNGWTRLLDGLFYSYL 217 >gi|227114168|ref|ZP_03827824.1| type III secretion system protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|253688597|ref|YP_003017787.1| Yop virulence translocation R [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755175|gb|ACT13251.1| Yop virulence translocation R [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 217 Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 71/200 (35%), Positives = 120/200 (60%), Gaps = 2/200 (1%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSI 107 LS+ P+++I+ TCF + IV I R +G+ VPPN+ + +AL T +VM+P D S Sbjct: 18 LSLIPLMMIVCTCFLKIAIVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVFQDISK 77 Query: 108 EMGIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 + +PL IT A + EP FM N L+ + + + K + Sbjct: 78 RVQEKPLDMTDITSLQASVTYGLEPLQTFMSRNVDPDILTHLHENSLQMWPASLSEKVNT 137 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP K++ Sbjct: 138 QNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPLKLL 197 Query: 227 FFVLIDGWSLLVENLVKSFI 246 FVL++GW+ L++ L S++ Sbjct: 198 LFVLVNGWTRLLDGLFYSYL 217 >gi|254992443|ref|ZP_05274633.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL J2-064] Length = 258 Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 108/189 (57%), Gaps = 4/189 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V F + T+LS++ +++M T F IIV + R G+G ++PPN V++ LALF++ ++M Sbjct: 52 VALFVLVTVLSLSASIVLMFTHFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMM 111 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P + + +P + + + ++ NT + D+++ + + Sbjct: 112 QPLITAWYDDVYKPSQKEEWSASKVWDETKPLLTKYVAENTYKHDINMML----KAEGED 167 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 +TK + L+P+F+++++ + F G I L F+ ID+IV+T++M +GMMM+PP +I Sbjct: 168 PVTKKEDAPLMALMPAFILTQITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTI 227 Query: 220 SLPFKVIFF 228 SLPFK++ F Sbjct: 228 SLPFKILVF 236 >gi|186976183|gb|ACD01065.1| EpaP [Escherichia coli O157:H7 str. EC10] Length = 221 Score = 108 bits (269), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 65/214 (30%), Positives = 121/214 (56%), Gaps = 20/214 (9%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 I ++ ++ P ++ TCF +F IVF I+R +G+ VP N+ + +AL ++ +VM P Sbjct: 9 AILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMPVG 68 Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAE----------PFWVFMRNNTREKDLSLF--MDM 151 + NN E + VA + ++R + + +S F + Sbjct: 69 KE--------IYNNSQNENLSFNNVASVVNFVETGMSGYKSYLRKYSEPELVSFFEKIQK 120 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 +SS N DI +D+I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GM Sbjct: 121 VNSSEDNEDIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGM 180 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MM+ P +IS P K+I FV +DGW++L + L+ + Sbjct: 181 MMMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214 >gi|146305087|ref|YP_001185552.1| type III secretion system protein [Pseudomonas mendocina ymp] gi|145573288|gb|ABP82820.1| Yop virulence translocation R [Pseudomonas mendocina ymp] Length = 217 Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 71/203 (34%), Positives = 118/203 (58%), Gaps = 8/203 (3%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP-TLDRSI 107 LS+ P LLI+ T F + + I R +G+ VPPN+ I +AL T +VM+P + Sbjct: 18 LSLIPFLLIVCTAFLKIAMTLMITRNAIGVQQVPPNMAIYGIALAATMFVMAPVAYEIQN 77 Query: 108 EMGIQPLMNNQITETTAIQ----RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163 + PL ++ T ++Q V EP FM NNT + ++ K Sbjct: 78 RLSDNPL---DLSSTDSLQASAGNVVEPLQDFMVNNTDPDIATHLLENTQRMWPREMSEK 134 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 + + IP+F++SEL+ +F+IGFLI +PF++ID+I++ +++A+GM M+ P +ISLP Sbjct: 135 ASKSDLLLAIPAFVLSELQAAFQIGFLIYIPFIVIDLIISNLLLALGMQMVSPMTISLPL 194 Query: 224 KVIFFVLIDGWSLLVENLVKSFI 246 K++ FVL+DGW+ L+ +L S++ Sbjct: 195 KLLLFVLVDGWTRLLNSLFYSYM 217 >gi|50121007|ref|YP_050174.1| type III secretion system protein [Pectobacterium atrosepticum SCRI1043] gi|42560424|gb|AAS20384.1| HrcR [Pectobacterium atrosepticum] gi|49611533|emb|CAG74981.1| type III secretion protein [Pectobacterium atrosepticum SCRI1043] Length = 217 Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 71/200 (35%), Positives = 120/200 (60%), Gaps = 2/200 (1%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSI 107 LS+ P+++I+ TCF + IV I R +G+ VPPN+ + +AL T +VM+P D S Sbjct: 18 LSLIPLMMIVCTCFLKIAIVLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVFQDISK 77 Query: 108 EMGIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 + +PL IT A + EP FM N L+ + + + K + Sbjct: 78 RVQEKPLDMTDITSLQASVTYGLEPLQTFMSRNVDPDILTHLHENSLQMWPASLSEKVNT 137 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP K++ Sbjct: 138 QNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPLKLL 197 Query: 227 FFVLIDGWSLLVENLVKSFI 246 FVL++GW+ L++ L S++ Sbjct: 198 LFVLVNGWTRLLDGLFYSYL 217 >gi|228900348|ref|ZP_04064577.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis IBL 4222] gi|228907399|ref|ZP_04071257.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis IBL 200] gi|228914344|ref|ZP_04077959.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228920476|ref|ZP_04083821.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228926802|ref|ZP_04089870.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228933050|ref|ZP_04095913.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228938879|ref|ZP_04101479.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228945369|ref|ZP_04107724.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228952149|ref|ZP_04114241.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228958047|ref|ZP_04119782.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar pakistani str. T13001] gi|228964750|ref|ZP_04125857.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar sotto str. T04001] gi|228971760|ref|ZP_04132381.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978369|ref|ZP_04138746.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis Bt407] gi|228984851|ref|ZP_04145021.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229029446|ref|ZP_04185529.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH1271] gi|229043522|ref|ZP_04191231.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH676] gi|229069317|ref|ZP_04202607.1| Flagellar biosynthetic protein FliP [Bacillus cereus F65185] gi|229078948|ref|ZP_04211500.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock4-2] gi|229090729|ref|ZP_04221962.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock3-42] gi|229109222|ref|ZP_04238821.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock1-15] gi|229121318|ref|ZP_04250549.1| Flagellar biosynthetic protein FliP [Bacillus cereus 95/8201] gi|229127093|ref|ZP_04256090.1| Flagellar biosynthetic protein FliP [Bacillus cereus BDRD-Cer4] gi|229138466|ref|ZP_04267055.1| Flagellar biosynthetic protein FliP [Bacillus cereus BDRD-ST26] gi|229149971|ref|ZP_04278197.1| Flagellar biosynthetic protein FliP [Bacillus cereus m1550] gi|229155337|ref|ZP_04283447.1| Flagellar biosynthetic protein FliP [Bacillus cereus ATCC 4342] gi|229172412|ref|ZP_04299971.1| Flagellar biosynthetic protein FliP [Bacillus cereus MM3] gi|229178174|ref|ZP_04305545.1| Flagellar biosynthetic protein FliP [Bacillus cereus 172560W] gi|229183958|ref|ZP_04311173.1| Flagellar biosynthetic protein FliP [Bacillus cereus BGSC 6E1] gi|229189864|ref|ZP_04316874.1| Flagellar biosynthetic protein FliP [Bacillus cereus ATCC 10876] gi|229195978|ref|ZP_04322731.1| Flagellar biosynthetic protein FliP [Bacillus cereus m1293] gi|228587537|gb|EEK45602.1| Flagellar biosynthetic protein FliP [Bacillus cereus m1293] gi|228593538|gb|EEK51347.1| Flagellar biosynthetic protein FliP [Bacillus cereus ATCC 10876] gi|228599483|gb|EEK57088.1| Flagellar biosynthetic protein FliP [Bacillus cereus BGSC 6E1] gi|228605304|gb|EEK62754.1| Flagellar biosynthetic protein FliP [Bacillus cereus 172560W] gi|228610883|gb|EEK68146.1| Flagellar biosynthetic protein FliP [Bacillus cereus MM3] gi|228628052|gb|EEK84769.1| Flagellar biosynthetic protein FliP [Bacillus cereus ATCC 4342] gi|228633493|gb|EEK90096.1| Flagellar biosynthetic protein FliP [Bacillus cereus m1550] gi|228645003|gb|EEL01246.1| Flagellar biosynthetic protein FliP [Bacillus cereus BDRD-ST26] gi|228656209|gb|EEL12050.1| Flagellar biosynthetic protein FliP [Bacillus cereus BDRD-Cer4] gi|228662163|gb|EEL17772.1| Flagellar biosynthetic protein FliP [Bacillus cereus 95/8201] gi|228674232|gb|EEL29477.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock1-15] gi|228692671|gb|EEL46397.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock3-42] gi|228704362|gb|EEL56796.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock4-2] gi|228713804|gb|EEL65689.1| Flagellar biosynthetic protein FliP [Bacillus cereus F65185] gi|228725744|gb|EEL76992.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH676] gi|228731905|gb|EEL82804.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH1271] gi|228774801|gb|EEM23197.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228781386|gb|EEM29587.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis Bt407] gi|228787850|gb|EEM35808.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228795000|gb|EEM42499.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar sotto str. T04001] gi|228801564|gb|EEM48446.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar pakistani str. T13001] gi|228807503|gb|EEM54030.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228814341|gb|EEM60607.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228820728|gb|EEM66753.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228826651|gb|EEM72422.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832915|gb|EEM78484.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228839106|gb|EEM84402.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228845338|gb|EEM90374.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228852260|gb|EEM97056.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis IBL 200] gi|228859235|gb|EEN03666.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis IBL 4222] Length = 177 Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 107/180 (59%), Gaps = 6/180 (3%) Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 +IV I R G+G+ ++PPN V++ LALF++ + M P L + P+ +IT + A Sbjct: 1 MIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKITVSQAA 60 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMISELRRS 184 + A +M +T + DL + + + R ++ K+ + L+PSF ++++++ Sbjct: 61 ETTAPIMKEYMSKHTYKHDLKMMLKV-----RGEELPKDLKDLSLFTLVPSFTLTQIQKG 115 Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 G I L F+ ID+I++T++M +GMMM+PP +SLPFK++ FV + G++ +V+ + K+ Sbjct: 116 LLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIVDIMFKT 175 >gi|83716894|ref|YP_438369.1| flagellar biosynthesis protein FliP [Burkholderia thailandensis E264] gi|167614815|ref|ZP_02383450.1| flagellar biosynthesis protein FliP [Burkholderia thailandensis Bt4] gi|257141400|ref|ZP_05589662.1| flagellar biosynthesis protein FliP [Burkholderia thailandensis E264] gi|83650719|gb|ABC34783.1| flagellar biosynthetic protein fliP [Burkholderia thailandensis E264] Length = 255 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 84/220 (38%), Positives = 125/220 (56%), Gaps = 7/220 (3%) Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84 + + + D S+ T I+ T+L + P L I++T F RF IV ++LR +G+ P Sbjct: 39 ESLGLRGDYSVKTQILLFM---TLLGLLPALAIVMTSFLRFAIVLALLRQALGLQQGLPA 95 Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144 VI ++AL +T VM P I+P ++IT AI R +P FM T + Sbjct: 96 RVITAVALLLTLLVMRPVGLDVWRHAIEPYDRDEITFREAIARAEKPLSRFMLAQTSKAS 155 Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204 L + S R D+ K + + + +FM+SEL+ +F+IG ++ LPFLIID++VA+ Sbjct: 156 LEQISRL--SGER--DVAKPEDHAFVVKAAAFMMSELKTAFQIGAMLFLPFLIIDLVVAS 211 Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 +MAMGMMML P ISLP K++ FVL+DGW+L V L S Sbjct: 212 TLMAMGMMMLSPLVISLPLKLLLFVLVDGWTLTVNTLTTS 251 >gi|167576640|ref|ZP_02369514.1| flagellar biosynthesis protein FliP [Burkholderia thailandensis TXDOH] Length = 255 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 78/192 (40%), Positives = 113/192 (58%), Gaps = 4/192 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P L I++T F RF IV ++LR +G+ P VI ++AL +T VM P I+ Sbjct: 64 PALAIVMTSFLRFAIVLALLRQALGLQQGLPARVITAVALLLTLLVMRPVGLDVWRHAIE 123 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P ++IT AI R +P FM T + L+ + S R D+ K + + + Sbjct: 124 PYDRDEITFREAIARAEKPISRFMLAQTSKASLAQISRL--SGER--DVAKPEDHAFVVK 179 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 +FM+SEL+ +F+IG ++ LPFLIID++VA+ +MAMGMMML P ISLP K++ FVL+D Sbjct: 180 AAAFMMSELKTAFQIGAMLFLPFLIIDLVVASTLMAMGMMMLSPLVISLPLKLLLFVLVD 239 Query: 233 GWSLLVENLVKS 244 GW+L V L S Sbjct: 240 GWTLTVNTLTTS 251 >gi|229058415|ref|ZP_04196799.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH603] gi|229132594|ref|ZP_04261442.1| Flagellar biosynthetic protein FliP [Bacillus cereus BDRD-ST196] gi|229166621|ref|ZP_04294373.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH621] gi|228616875|gb|EEK73948.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH621] gi|228650826|gb|EEL06813.1| Flagellar biosynthetic protein FliP [Bacillus cereus BDRD-ST196] gi|228719924|gb|EEL71514.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH603] Length = 177 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 107/180 (59%), Gaps = 6/180 (3%) Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 +IV I R G+G+ ++PPN V++ LALF++ + M P L + P+ +IT + A Sbjct: 1 MIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKITVSQAA 60 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMISELRRS 184 + A +M +T + DL + + + R ++ K+ + L+PSF ++++++ Sbjct: 61 ETTAPIMKDYMSKHTYKHDLKMMLKV-----RGEELPKDLKDLSLFTLVPSFTLTQIQKG 115 Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 G I L F+ ID+I++T++M +GMMM+PP +SLPFK++ FV + G++ +V+ + K+ Sbjct: 116 LLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIVDIMFKT 175 >gi|229017052|ref|ZP_04173971.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH1273] gi|229023233|ref|ZP_04179743.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH1272] gi|228738027|gb|EEL88513.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH1272] gi|228744225|gb|EEL94308.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH1273] Length = 177 Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 107/180 (59%), Gaps = 6/180 (3%) Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 +IV I R G+G+ ++PPN V++ LALF++ + M P L + P+ +IT + A Sbjct: 1 MIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKITVSQAA 60 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMISELRRS 184 + A +M +T + DL + + + R ++ K+ + L+PSF ++++++ Sbjct: 61 ETTAPIMKDYMSKHTYKHDLKMMLKV-----RGEELPKDLKDLSLFTLVPSFTLTQIQKG 115 Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 G I L F+ ID+I++T++M +GMMM+PP +SLPFK++ FV + G++ +V+ + K+ Sbjct: 116 LLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIVDIMFKT 175 >gi|284007673|emb|CBA73393.1| type III secretion sytem SpaP,YscR,HrcR,EscR [Arsenophonus nasoniae] Length = 226 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 119/210 (56%), Gaps = 8/210 (3%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 + +I ++ P L+ TC+ +F IVF ++R +G+ VP N+V+ ++AL ++ ++M+P Sbjct: 11 LLSIATLLPFLIAAGTCYLKFSIVFVMVRNAIGVQQVPSNMVLNAIALILSLFIMAPLAK 70 Query: 105 RSIEMGIQPLMNNQITETTAI---QRVAEPFWVFMRNNTREKDLSL--FMDMAHSSHRNT 159 + N T I Q + E + + + D L F A Sbjct: 71 NFYLYSVNYQTENPHGFTDPILLDQFLDESLQDYRQYLHKYADPELVNFFVAAQERVPQP 130 Query: 160 DITKNDHIEYRILIP---SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 + ++ +E LIP ++ +SE++ +F IGF + LPF++ID++V++I++A+GMMM+ P Sbjct: 131 ENQIDNSMENGSLIPLLAAYALSEIKSAFIIGFYLYLPFVVIDLVVSSILLALGMMMMSP 190 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 ++S+P K++ FV +DGWSLL + L+ ++ Sbjct: 191 ITLSVPIKLVLFVAMDGWSLLSKGLISQYL 220 >gi|229144379|ref|ZP_04272784.1| Flagellar biosynthetic protein FliP [Bacillus cereus BDRD-ST24] gi|228639010|gb|EEK95435.1| Flagellar biosynthetic protein FliP [Bacillus cereus BDRD-ST24] Length = 177 Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 57/180 (31%), Positives = 106/180 (58%), Gaps = 6/180 (3%) Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 +IV I R G+G+ ++PPN V++ LALF++ + M P L + P+ +IT + A Sbjct: 1 MIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKITVSQAA 60 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMISELRRS 184 + A +M +T + DL + + + R + K+ + L+PSF ++++++ Sbjct: 61 ETTAPIMKEYMSKHTYKHDLKMMLKV-----RGEQLPKDLKDLSLFTLVPSFTLTQIQKG 115 Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 G I L F+ ID+I++T++M +GMMM+PP +SLPFK++ FV + G++ +V+ + K+ Sbjct: 116 LLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIVDIMFKT 175 >gi|312958828|ref|ZP_07773347.1| type III secretion system rscR [Pseudomonas fluorescens WH6] gi|311286598|gb|EFQ65160.1| type III secretion system rscR [Pseudomonas fluorescens WH6] Length = 216 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 73/204 (35%), Positives = 123/204 (60%), Gaps = 10/204 (4%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT---LDR 105 LS+ P+LLI+ T F + +IV I R +G+ VPP++ I +AL T ++M+P + Sbjct: 17 LSLMPMLLIICTSFLKIVIVLMITRNAIGVQQVPPSMAINGIALAATLFIMAPVGYEIAE 76 Query: 106 SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDIT 162 SI++ L N Q T + + P FM N L+ ++ + ++ Sbjct: 77 SIKVSPLDLSNVQTVLQTGGEAIM-PLRAFMLRNVDPDVLTHLLENTARLWPAQMAEEVQ 135 Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222 + D I +LIP+F++S+L+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P +ISLP Sbjct: 136 REDLI---LLIPAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTISLP 192 Query: 223 FKVIFFVLIDGWSLLVENLVKSFI 246 K++ FVL+ GWS L+++L S++ Sbjct: 193 LKLLLFVLVSGWSRLLDSLFLSYL 216 >gi|62085087|gb|AAX62950.1| putative type III secretion apparatus integral membrane protein component [Escherichia coli] Length = 220 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 60/207 (28%), Positives = 120/207 (57%), Gaps = 7/207 (3%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 I ++ ++ P ++ T F +F IVF I+R +G+ VP N+ + +AL ++ +VM P + Sbjct: 9 AILSLFTLLPFIIASGTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMP-V 67 Query: 104 DRSIEMGIQP---LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF--MDMAHSSHRN 158 + I Q NN + ++ + ++ + + ++ F + +SS N Sbjct: 68 GKEIYYNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVNFFEKIQKVNSSEDN 127 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 +I +D+I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMMM P + Sbjct: 128 EEIFDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMMM-SPVT 186 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 IS P K+I FV +DGW++L + L+ + Sbjct: 187 ISTPIKLILFVAMDGWTMLSKGLILQY 213 >gi|212711701|ref|ZP_03319829.1| hypothetical protein PROVALCAL_02776 [Providencia alcalifaciens DSM 30120] gi|212685803|gb|EEB45331.1| hypothetical protein PROVALCAL_02776 [Providencia alcalifaciens DSM 30120] Length = 221 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 63/214 (29%), Positives = 116/214 (54%), Gaps = 20/214 (9%) Query: 43 FGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT 102 I + ++ P ++ TC+ + IV ++R MG+ VP + + +AL ++ +VM P Sbjct: 11 LAIIALSTLLPFIIAAGTCYLKISIVLIMVRNAMGVQQVPSTMALNGIALLLSIFVMMPV 70 Query: 103 LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN--------TREKDLSLFMDMAHS 154 L + M ++ + + ++ V F+ N + D L Sbjct: 71 LQD-----VNQYMRHESVDFSNVESVDN----FVDNGLGRYKSYLMKYSDPQLVTFFESV 121 Query: 155 SHRNTDIT-KNDHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 T+I + + E + L+P++ +SE++ +FEIGF I LPF++ID+++++I++A+GM Sbjct: 122 QQGKTEIEVQEEQAEPTLFSLLPAYALSEIKSAFEIGFYIYLPFVVIDLVISSILLALGM 181 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MM+ P +IS+P K+I FV IDGWSL+ + LV + Sbjct: 182 MMMSPVTISVPVKLILFVAIDGWSLISKGLVMQY 215 >gi|51103054|gb|AAT96200.1| HrcR [Pseudomonas viridiflava] Length = 217 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 74/212 (34%), Positives = 121/212 (57%), Gaps = 26/212 (12%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL----- 103 LS+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +VM+P Sbjct: 18 LSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVAHDIQQ 77 Query: 104 ---DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR--- 157 D +E+G + +++ V EP FM TR D + + ++ R Sbjct: 78 RVHDHPLELGSADKLQ------ASLRTVIEPLQRFM---TRNTDPDVVAHLLENTQRMWP 128 Query: 158 ---NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214 TK+D + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ Sbjct: 129 KEMADQATKDDLL---LAIPAFVMSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMV 185 Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 P +ISLP K++ FVL+ GWS L+++L S++ Sbjct: 186 SPMTISLPLKLLLFVLVSGWSRLLDSLFYSYM 217 >gi|289677999|ref|ZP_06498889.1| type III secretion system protein [Pseudomonas syringae pv. syringae FF5] gi|330901781|gb|EGH33200.1| type III secretion system protein YscR [Pseudomonas syringae pv. japonica str. M301072PT] Length = 217 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 123/206 (59%), Gaps = 14/206 (6%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSI 107 LS+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +VM+P D Sbjct: 18 LSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVAHDIQQ 77 Query: 108 EMGIQPL-MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR------NTD 160 + PL ++N ++++ V EP FM TR D + + ++ R Sbjct: 78 RVHEHPLELSNADKLQSSLKVVIEPLQRFM---TRNTDPDVVAHLLENTQRMWPKEMADQ 134 Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220 +KND + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++S Sbjct: 135 ASKNDLL---LAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTLS 191 Query: 221 LPFKVIFFVLIDGWSLLVENLVKSFI 246 LP K++ FVL+ GWS L+++L S++ Sbjct: 192 LPLKLLLFVLVSGWSRLLDSLFYSYM 217 >gi|2494569|sp|Q60236|HRPW_PSESY RecName: Full=Harpin secretion protein hrpW gi|818891|gb|AAB05075.1| HrpW [Pseudomonas syringae pv. syringae] gi|148562540|gb|ABQ88359.1| HrcR [Pseudomonas syringae pv. syringae] Length = 208 Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 122/206 (59%), Gaps = 14/206 (6%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSI 107 LS+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +VM+P D Sbjct: 9 LSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVAHDIQQ 68 Query: 108 EMGIQPL-MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR------NTD 160 + PL ++N ++++ V EP FM TR D + + ++ R Sbjct: 69 RVHEHPLELSNADKLQSSLKVVIEPLQRFM---TRNTDPDVVAHLLENTQRMWPKEMADQ 125 Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220 KND + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++S Sbjct: 126 ANKNDLL---LAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTLS 182 Query: 221 LPFKVIFFVLIDGWSLLVENLVKSFI 246 LP K++ FVL+ GWS L+++L S++ Sbjct: 183 LPLKLLLFVLVSGWSRLLDSLFYSYM 208 >gi|330937035|gb|EGH41123.1| type III secretion system protein YscR [Pseudomonas syringae pv. pisi str. 1704B] Length = 217 Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 122/206 (59%), Gaps = 14/206 (6%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSI 107 LS+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +VM+P D Sbjct: 18 LSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVAHDIQQ 77 Query: 108 EMGIQPL-MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR------NTD 160 + PL ++N ++++ V EP FM TR D + + ++ R Sbjct: 78 RVHEHPLELSNADKLQSSLKVVIEPLQRFM---TRNTDPDVVAHLLENTQRMWPKEMADQ 134 Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220 +KND + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++S Sbjct: 135 ASKNDLL---LAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTLS 191 Query: 221 LPFKVIFFVLIDGWSLLVENLVKSFI 246 LP K++ FVL+ GWS L++ L S++ Sbjct: 192 LPLKLLLFVLVSGWSRLLDRLFYSYM 217 >gi|330975864|gb|EGH75930.1| type III secretion system protein YscR [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 217 Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 122/206 (59%), Gaps = 14/206 (6%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSI 107 LS+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +VM+P D Sbjct: 18 LSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVAHDIQQ 77 Query: 108 EMGIQPL-MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR------NTD 160 + PL ++N ++++ V EP FM TR D + + ++ R Sbjct: 78 RVHEHPLELSNADKLQSSLKVVIEPLQRFM---TRNTDPDVVAHLLENTQRMWPKEMADQ 134 Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220 KND + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++S Sbjct: 135 ANKNDLL---LAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTLS 191 Query: 221 LPFKVIFFVLIDGWSLLVENLVKSFI 246 LP K++ FVL+ GWS L+++L S++ Sbjct: 192 LPLKLLLFVLVSGWSRLLDSLFYSYM 217 >gi|188534810|ref|YP_001908607.1| surface presentation of antigens protein SpaP [Erwinia tasmaniensis Et1/99] gi|188029852|emb|CAO97733.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99] Length = 223 Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 115/208 (55%), Gaps = 13/208 (6%) Query: 46 FTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDR 105 FT+L P L+ TCF +F IV ++R +G+ VP L + +AL +T +VM P + Sbjct: 15 FTLL---PFLIAGGTCFIKFSIVMVMVRNALGIQQVPSTLTLNGIALILTAFVMMPVCQK 71 Query: 106 SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN---NTREKDLSLFMDMAHSSHRNTDIT 162 G + + +I ++ + R+ + + +L F + I Sbjct: 72 V--SGYIESHHIDFNNSASINQLMDQGLGSYRDYLVHYSDHELIRFFNQVQQQKTGETIP 129 Query: 163 KNDHIEYR-----ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + + E R L+P++ +SE++ +F+I F + +PF++IDM+V++I++A+GMMM+ P Sbjct: 130 EVEEHELRSLSLITLMPAYALSEIQSAFKIAFYLYVPFVVIDMVVSSILLALGMMMMSPV 189 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 +IS+P K+I FV ++GWSLL + ++ + Sbjct: 190 TISIPIKLILFVSMNGWSLLTKGMIAQY 217 >gi|179741398|gb|ACB86714.1| HrcR [uncultured soil bacterium] gi|179741939|gb|ACB86730.1| HrcR [uncultured soil bacterium] Length = 159 Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 95/160 (59%), Gaps = 10/160 (6%) Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEM--GIQPLMN-----NQITETTAIQRV 128 +G+ VPPN+V+ LAL +T YVM P R + G L + ET + + Sbjct: 3 IGVQQVPPNIVLNGLALVLTLYVMQPVGARMADAVGGANGLAGVTSSTGNMMETANLAK- 61 Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188 EP F+ ++R + + F+ A + +D ++ I +P+F+++EL +F+IG Sbjct: 62 -EPLREFLLKHSRPNERAFFLRTAQRVDPARSVEMSDR-DFVITVPAFVVNELSVAFQIG 119 Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 FLI LPFL+ID++++ I++AMGMMML PT+ISLP K++ F Sbjct: 120 FLIFLPFLVIDLVISNILLAMGMMMLSPTTISLPLKLLLF 159 >gi|251789493|ref|YP_003004214.1| type III secretion system protein [Dickeya zeae Ech1591] gi|247538114|gb|ACT06735.1| Yop virulence translocation R [Dickeya zeae Ech1591] Length = 217 Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 69/203 (33%), Positives = 123/203 (60%), Gaps = 8/203 (3%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSI 107 LS+ P+ +I+ TCF + +V I R +G+ VPPN+ + +AL T +VM+P D Sbjct: 18 LSLIPLSMIVCTCFLKISMVLMITRNAIGVQQVPPNMALYGIALAATVFVMAPVFSDIKQ 77 Query: 108 EMGIQPL-MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 P+ +N +++ R EP FM NT D + + +S R ++ Sbjct: 78 RFQDAPVDFSNLDALESSVTRGIEPLQKFMSRNT---DPDILTHLHENSLRMWPAAMSEK 134 Query: 167 IEYR---ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 I + +++P++++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ PT++SLP Sbjct: 135 ITTQSILLIVPAYVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPTTLSLPL 194 Query: 224 KVIFFVLIDGWSLLVENLVKSFI 246 K++ FVL++GW+ L++ L S++ Sbjct: 195 KLLLFVLVNGWTRLLDGLFYSYL 217 >gi|238577787|gb|ACR46698.1| HrcR [Pseudomonas syringae pv. tabaci] Length = 208 Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 122/206 (59%), Gaps = 14/206 (6%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSI 107 LS+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +VM+P D Sbjct: 9 LSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVAHDIQQ 68 Query: 108 EMGIQPL-MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR------NTD 160 + PL M++ ++++ V EP FM TR D + + ++ R Sbjct: 69 RVHDHPLEMSSADKLQSSLKLVIEPLQRFM---TRNTDPDVVAHLLENTQRMWPKEMADQ 125 Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220 KND + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++S Sbjct: 126 ANKNDLL---LAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTLS 182 Query: 221 LPFKVIFFVLIDGWSLLVENLVKSFI 246 LP K++ FVL+ GWS L+++L S++ Sbjct: 183 LPLKLLLFVLVSGWSRLLDSLFYSYM 208 >gi|257487234|ref|ZP_05641275.1| type III secretion system protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330894462|gb|EGH27123.1| type III secretion system protein YscR [Pseudomonas syringae pv. mori str. 301020] gi|330984964|gb|EGH83067.1| type III secretion system protein YscR [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009152|gb|EGH89208.1| type III secretion system protein YscR [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 217 Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 122/206 (59%), Gaps = 14/206 (6%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSI 107 LS+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +VM+P D Sbjct: 18 LSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVAHDIQQ 77 Query: 108 EMGIQPL-MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR------NTD 160 + PL M++ ++++ V EP FM TR D + + ++ R Sbjct: 78 RVHDHPLEMSSADKLQSSLKLVIEPLQRFM---TRNTDPDVVAHLLENTQRMWPKEMADQ 134 Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220 KND + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++S Sbjct: 135 ANKNDLL---LAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTLS 191 Query: 221 LPFKVIFFVLIDGWSLLVENLVKSFI 246 LP K++ FVL+ GWS L+++L S++ Sbjct: 192 LPLKLLLFVLVSGWSRLLDSLFYSYM 217 >gi|254255042|ref|ZP_04948359.1| Flagellar transport protein FliP [Burkholderia dolosa AUO158] gi|124899687|gb|EAY71530.1| Flagellar transport protein FliP [Burkholderia dolosa AUO158] Length = 250 Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 82/236 (34%), Positives = 130/236 (55%), Gaps = 10/236 (4%) Query: 12 VTPELVFAKSSLHDVMNIPAD---LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIV 68 + LV A +L D + I + LSI T I+ T+L + P LL+ +T F R++IV Sbjct: 18 ASAALVCAGPALADTLTISSGGDGLSIKTQILVLM---TLLGLLPALLMTMTSFLRYVIV 74 Query: 69 FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128 S+L+ +G+ P VI +AL +T M P + E P +I A++ Sbjct: 75 LSLLKQALGLQQGLPARVITGVALVLTLLTMRPVGEAIWEKAYVPYEQEKIGLRQALKAA 134 Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188 P FM T + L+ ++ + I + + + + +F++SEL+ +F+IG Sbjct: 135 DAPLSQFMLAQTSKATLAQIAKLSGTEA----IKEPTQQPFLVKLSAFVLSELKTAFQIG 190 Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 ++ +PFL+ID+IVA+++MAMGMMML P ISLP K++ FVL+DGWSL V L+ S Sbjct: 191 AMLFIPFLVIDIIVASVLMAMGMMMLSPLVISLPLKLLLFVLVDGWSLTVSTLLTS 246 >gi|330957488|gb|EGH57748.1| type III secretion system protein YscR [Pseudomonas syringae pv. maculicola str. ES4326] Length = 217 Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 122/206 (59%), Gaps = 14/206 (6%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSI 107 LS+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +VM+P D Sbjct: 18 LSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVAHDIQQ 77 Query: 108 EMGIQPL-MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR------NTD 160 + PL M++ ++++ V EP FM TR D + + ++ R Sbjct: 78 RVHDHPLEMSSADKLQSSLKVVIEPLQRFM---TRNTDPDVVAHLLENTQRMWPKEMADQ 134 Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220 KND + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++S Sbjct: 135 ANKNDLL---LAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTLS 191 Query: 221 LPFKVIFFVLIDGWSLLVENLVKSFI 246 LP K++ FVL+ GWS L+++L S++ Sbjct: 192 LPLKLLLFVLVSGWSRLLDSLFYSYM 217 >gi|296535008|ref|ZP_06897288.1| flagellar biosynthetic protein FliP [Roseomonas cervicalis ATCC 49957] gi|296264663|gb|EFH11008.1| flagellar biosynthetic protein FliP [Roseomonas cervicalis ATCC 49957] Length = 190 Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 51/120 (42%), Positives = 80/120 (66%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 S++T IV T+L++AP +L++ T F R ++V S+LRT +G+ PPN VI+SL+LF Sbjct: 61 SLTTNIVGLIVATTLLALAPGILVVATAFTRIVVVLSMLRTALGLQQSPPNSVIVSLSLF 120 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 + +VM+P L+R+ +PL++ ITE A +R PF FM N RE+DL+LF+++A Sbjct: 121 LAAFVMAPVLERAWNDAARPLIDGTITEEMAAERAIAPFRSFMEANVRERDLALFIEIAR 180 >gi|73532640|dbj|BAE19878.1| type III secretion apparatus [Edwardsiella tarda] Length = 171 Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 58/175 (33%), Positives = 101/175 (57%), Gaps = 11/175 (6%) Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE--TTAIQRVAE---- 130 G P N+ + LAL +T ++M+P + +Q + + E TT + R+++ Sbjct: 1 GYSRSPRNIALYGLALILTLFIMTP-----VGTAVQARLADAPAEAQTTLLARLSDNTLD 55 Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190 P+ F+R +T L F +A S + + +L+P+F +S+L +F+IG L Sbjct: 56 PYRQFLRQHTSATQLHFFRQVATKSWPASVREQISDDSLLLLMPAFAVSQLVEAFQIGLL 115 Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 + LPF+ ID+IV+ I++AMGMMM+ P +IS+PFK++ F+L+ GW L+ L+ S+ Sbjct: 116 LFLPFIAIDLIVSNILLAMGMMMVSPMTISMPFKLLVFILVGGWDKLLGQLLLSY 170 >gi|66044459|ref|YP_234300.1| type III secretion system protein [Pseudomonas syringae pv. syringae B728a] gi|63255166|gb|AAY36262.1| type III secretion protein HrcR [Pseudomonas syringae pv. syringae B728a] gi|330969104|gb|EGH69170.1| type III secretion system protein YscR [Pseudomonas syringae pv. aceris str. M302273PT] Length = 217 Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 69/200 (34%), Positives = 118/200 (59%), Gaps = 2/200 (1%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSI 107 LS+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +VM+P D Sbjct: 18 LSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVAHDIQQ 77 Query: 108 EMGIQPL-MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 + PL ++N ++++ V EP FM NT ++ ++ + Sbjct: 78 RVHEHPLELSNADKLQSSLKVVIEPLQRFMTRNTDPDVVAHLLENTQRMWPKEMADQASK 137 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP K++ Sbjct: 138 DDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTLSLPLKLL 197 Query: 227 FFVLIDGWSLLVENLVKSFI 246 FVL+ GWS L+++L S++ Sbjct: 198 LFVLVSGWSRLLDSLFYSYM 217 >gi|28628132|gb|AAO34616.1| HrcR [Erwinia chrysanthemi] Length = 217 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/203 (33%), Positives = 123/203 (60%), Gaps = 8/203 (3%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSI 107 LS+ P+ +I+ TCF + +V + R +G+ VPPN+ + +AL T +VM+P D Sbjct: 18 LSLIPLSMIVCTCFLKISMVLMLTRNAIGVQQVPPNMALYGIALAATVFVMAPVFSDIKQ 77 Query: 108 EMGIQPL-MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 P+ +N +++ R EP FM NT D + + +S R ++ Sbjct: 78 RFQDAPVDFSNLDALESSVTRGIEPLQKFMSRNT---DPDILTHLHENSLRMWPAAMSEK 134 Query: 167 IEYR---ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 I + +++P++++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ PT++SLP Sbjct: 135 ITTQSILLIVPAYVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPTTLSLPL 194 Query: 224 KVIFFVLIDGWSLLVENLVKSFI 246 K++ FVL++GW+ L++ L S++ Sbjct: 195 KLLLFVLVNGWTRLLDGLFYSYL 217 >gi|307131230|ref|YP_003883246.1| type III secretion inner membrane protein [Dickeya dadantii 3937] gi|306528759|gb|ADM98689.1| type III secretion inner membrane protein [Dickeya dadantii 3937] Length = 217 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 67/203 (33%), Positives = 125/203 (61%), Gaps = 8/203 (3%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSI 107 LS+ P+++I+ TCF + +V I R +G+ VPPN+ + +AL T +VM+P D Sbjct: 18 LSLIPLMMIVCTCFLKVSMVLMITRNAIGVQQVPPNMALYGIALAATLFVMAPVFSDIKQ 77 Query: 108 EMGIQPLMNNQITE-TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 P+ + + +++ + EP FM NT D + + +S R + ++ Sbjct: 78 RFQDAPVDFSSLDALESSVTKGIEPLQKFMSRNT---DPDILTHLHENSLRMWPASMSEK 134 Query: 167 IEYR---ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 I + +++P++++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ PT++SLP Sbjct: 135 ITTQNILLVLPAYVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPTTLSLPL 194 Query: 224 KVIFFVLIDGWSLLVENLVKSFI 246 K++ FVL++GW+ L++ L S++ Sbjct: 195 KLLLFVLVNGWTRLLDGLFYSYL 217 >gi|271500421|ref|YP_003333446.1| Yop virulence translocation R [Dickeya dadantii Ech586] gi|270343976|gb|ACZ76741.1| Yop virulence translocation R [Dickeya dadantii Ech586] Length = 217 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 67/203 (33%), Positives = 123/203 (60%), Gaps = 8/203 (3%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSI 107 LS+ P+ +I+ TCF + +V + R +G+ VPPN+ + +AL T +VM+P D + Sbjct: 18 LSLIPLAMIVCTCFLKISMVLMLTRNAIGVQQVPPNMALYGVALAATLFVMAPVFSDIKL 77 Query: 108 EMGIQPLMNNQITE-TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 P+ + + +++ R EP FM NT D + + +S R + Sbjct: 78 RFQDAPVDFSSLDALESSVTRGIEPLQKFMSRNT---DPDILTHLHENSLRMWPAAMTEK 134 Query: 167 IEYR---ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 I + +++P++++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ PT++SLP Sbjct: 135 ITTQNILLILPAYVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPTTLSLPL 194 Query: 224 KVIFFVLIDGWSLLVENLVKSFI 246 K++ FVL++GW+ L++ L S++ Sbjct: 195 KLLLFVLVNGWTRLLDGLFYSYL 217 >gi|82795278|gb|ABB91647.1| type III secretion protein HrcR [Pseudomonas syringae pv. tagetis] Length = 217 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 69/202 (34%), Positives = 115/202 (56%), Gaps = 14/202 (6%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL--------D 104 P LLI+ T F + + I R +G+ VPPN+ + +AL T +VM+P D Sbjct: 22 PFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVAHEMQQRVHD 81 Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 +E+G N + + +A + V EP FM NT ++ +D + Sbjct: 82 HPLELG-----NTEKLQASA-RTVIEPLQRFMTRNTDPDVVAHLLDNTQRMWPKEMADQA 135 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP K Sbjct: 136 SKEDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTLSLPLK 195 Query: 225 VIFFVLIDGWSLLVENLVKSFI 246 ++ FVL+ GWS L+++L S++ Sbjct: 196 LLLFVLVSGWSRLLDSLFYSYM 217 >gi|254575132|gb|ACT68033.1| type III secretion apparatus [Pantoea stewartii subsp. stewartii DC283] Length = 223 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 117/212 (55%), Gaps = 14/212 (6%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 + + ++ P ++ TCF +F IV ++R +G+ VP L + +AL ++ +VM P Sbjct: 10 ALLSFFTLLPFIIAGGTCFIKFSIVLIMVRNALGIQQVPSTLTLNGVALILSAFVMMPVC 69 Query: 104 DRSIEMGIQPLMNNQI--TETTAIQRVAEPFWVFMRN---NTREKDLSLFMDMAHSSHRN 158 R E + +N I + ++ ++ E R+ + DL F + Sbjct: 70 QRISEY----IESNHIDFNNSASVTQLMEQGLGSYRDYLVRYSDHDLIRFFNKVQQRRSG 125 Query: 159 TDITK-NDH----IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 + + DH + L+P++ +SE++ +F+I F + +PF++IDM+V++I++A+GMMM Sbjct: 126 EPVPEVEDHELSTLSLITLMPAYALSEIQSAFKIAFYLYVPFVVIDMVVSSILLALGMMM 185 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 + P +IS+P K+I FV ++GW+LL + L+ + Sbjct: 186 MSPVTISIPIKLILFVSMNGWALLTKGLIAQY 217 >gi|3282781|gb|AAC25069.1| HrcR [Pseudomonas syringae pv. phaseolicola] gi|42562002|gb|AAS20444.1| HrcR [Pseudomonas syringae pv. phaseolicola] gi|71555436|gb|AAZ34647.1| type III secretion component protein HrcR [Pseudomonas syringae pv. phaseolicola 1448A] Length = 208 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/207 (35%), Positives = 123/207 (59%), Gaps = 16/207 (7%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108 LS+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +VM+P + I+ Sbjct: 9 LSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAP-VAHEIQ 67 Query: 109 MGIQ--PL-MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR------NT 159 + PL + + ++++ V EP FM TR D + + ++ R Sbjct: 68 QRVHEHPLELGSADKLQSSLKTVIEPLQRFM---TRNTDPDVVAHLLENTQRMWPKEMAD 124 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 KND + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++ Sbjct: 125 QANKNDLL---LAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTL 181 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246 SLP K++ FVL+ GWS L+++L S++ Sbjct: 182 SLPLKLLLFVLVSGWSRLLDSLFYSYM 208 >gi|161611342|ref|YP_273544.2| type III secretion system protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 215 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 73/207 (35%), Positives = 123/207 (59%), Gaps = 16/207 (7%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108 LS+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +VM+P + I+ Sbjct: 16 LSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAP-VAHEIQ 74 Query: 109 MGIQ--PL-MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR------NT 159 + PL + + ++++ V EP FM TR D + + ++ R Sbjct: 75 QRVHEHPLELGSADKLQSSLKTVIEPLQRFM---TRNTDPDVVAHLLENTQRMWPKEMAD 131 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 KND + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++ Sbjct: 132 QANKNDLL---LAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTL 188 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246 SLP K++ FVL+ GWS L+++L S++ Sbjct: 189 SLPLKLLLFVLVSGWSRLLDSLFYSYM 215 >gi|284007398|emb|CBA72807.1| type III secretion system protein Spap [Arsenophonus nasoniae] Length = 220 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 63/200 (31%), Positives = 118/200 (59%), Gaps = 8/200 (4%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P ++ TC+ +F IVF + R +G+ +P N+V+ +AL ++F+V+ P + S + + Sbjct: 18 PFIIATGTCYIKFSIVFIMARNALGLQQIPSNMVLNGIALMLSFFVLLPIVKTSYQEFNK 77 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRN---NTREKDLSLFMDMAH--SSHRNTDITKNDHI 167 +N + +I +N +KDL F D H S N + +N + Sbjct: 78 --VNIDYKDIDSIINSVNSGLSGYKNYLIKYSDKDLVSFFDKLHQKSDDGNDNQYENGND 135 Query: 168 EYRI-LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 + L+P++ +SE++ +F IGF + LPF++ID+++++I++++GMMM+ P +IS+P K+I Sbjct: 136 SSIVSLLPAYALSEIKNAFTIGFYLYLPFVVIDLLISSILLSLGMMMMSPVTISVPIKLI 195 Query: 227 FFVLIDGWSLLVENLVKSFI 246 F+ +DGWSLL + L+ +I Sbjct: 196 LFICLDGWSLLSKGLITQYI 215 >gi|179741982|gb|ACB86732.1| HrcR [uncultured soil bacterium] Length = 159 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 58/160 (36%), Positives = 95/160 (59%), Gaps = 10/160 (6%) Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEM--GIQPLMN-----NQITETTAIQRV 128 +G+ VPPN+V+ LAL +T YVM P R + G L + ET + + Sbjct: 1 IGVQQVPPNIVLNGLALVLTLYVMQPVGARMADAVGGANGLAGVTSSTGNMMETANLAK- 59 Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188 EP F+ +++ + + F+ A + +D ++ I +P+F+++EL +F+IG Sbjct: 60 -EPLREFLLKHSQPNERAFFLRTAQRVDPARSVEMSDR-DFVITVPAFVVNELSVAFQIG 117 Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 FLI LPFL+ID++++ I++AMGMMML PT+ISLP K++ F Sbjct: 118 FLIFLPFLVIDLVISNILLAMGMMMLSPTTISLPLKLLLF 157 >gi|289623683|ref|ZP_06456637.1| type III secretion system protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647643|ref|ZP_06478986.1| type III secretion system protein [Pseudomonas syringae pv. aesculi str. 2250] gi|298485949|ref|ZP_07004024.1| type III secretion system inner membrane protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159535|gb|EFI00581.1| type III secretion system inner membrane protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320322955|gb|EFW79045.1| type III secretion system protein [Pseudomonas syringae pv. glycinea str. B076] gi|320329922|gb|EFW85910.1| type III secretion system protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330871287|gb|EGH05996.1| type III secretion system protein YscR [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330874622|gb|EGH08771.1| type III secretion system protein YscR [Pseudomonas syringae pv. glycinea str. race 4] Length = 217 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 73/207 (35%), Positives = 123/207 (59%), Gaps = 16/207 (7%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108 LS+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +VM+P + I+ Sbjct: 18 LSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAP-VAHEIQ 76 Query: 109 MGIQ--PL-MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR------NT 159 + PL + + ++++ V EP FM TR D + + ++ R Sbjct: 77 QRVHEHPLELGSADKLQSSLKTVIEPLQRFM---TRNTDPDVVAHLLENTQRMWPKEMAD 133 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 KND + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++ Sbjct: 134 QANKNDLL---LAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTL 190 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246 SLP K++ FVL+ GWS L+++L S++ Sbjct: 191 SLPLKLLLFVLVSGWSRLLDSLFYSYM 217 >gi|170737012|ref|YP_001778272.1| flagellar biosynthetic protein FliP [Burkholderia cenocepacia MC0-3] gi|169819200|gb|ACA93782.1| flagellar biosynthetic protein FliP [Burkholderia cenocepacia MC0-3] Length = 248 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 61/185 (32%), Positives = 107/185 (57%), Gaps = 4/185 (2%) Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R++IV S+++ +G+ P ++ +AL +T M P + + P +I Sbjct: 64 TSFLRYVIVLSLVKQALGLQQGLPGRIVTGVALVLTMLTMRPVGEEIWQKAFVPYDQGKI 123 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 + TA+ +P +M T + L+ ++ + + + + + + +F++S Sbjct: 124 SMQTALATSEQPLGRYMLAQTNKATLAQMAKLSGTEK----VMDPEKQPFLVKLSAFVLS 179 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+ +F++G ++ +PFLI+D+IVA+++MAMGMMML P ISLP K++ FVL+DGWSL V Sbjct: 180 ELKTAFQMGAMLFIPFLIVDIIVASVLMAMGMMMLSPLVISLPLKLLLFVLVDGWSLTVN 239 Query: 240 NLVKS 244 LV S Sbjct: 240 TLVTS 244 >gi|292487271|ref|YP_003530143.1| surface presentation of antigens protein SpaP [Erwinia amylovora CFBP1430] gi|292900357|ref|YP_003539726.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291200205|emb|CBJ47333.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291552690|emb|CBA19735.1| Surface presentation of antigens protein SpaP [Erwinia amylovora CFBP1430] gi|312171379|emb|CBX79638.1| Surface presentation of antigens protein SpaP [Erwinia amylovora ATCC BAA-2158] Length = 223 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 59/206 (28%), Positives = 113/206 (54%), Gaps = 9/206 (4%) Query: 46 FTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDR 105 FT+L P ++ TCF +F IV ++R +G+ VP L + +AL MT +VM P + Sbjct: 15 FTLL---PFIIAGGTCFIKFSIVMVMVRNALGIQQVPSTLTLNGIALIMTAFVMMPICQK 71 Query: 106 --SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163 S NN + T + + + ++ + + + F + + Sbjct: 72 ISSYVETNHIDFNNSASVTQLMDQGLGGYRDYLVRYSDHELIRYFNKIQQQQAGESAPEV 131 Query: 164 NDH----IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 +H + L+P++ +SE++ +F+I F + +PF++ID++V++I++A+GMMM+ P +I Sbjct: 132 EEHQLSSLSLMTLMPAYALSEIQSAFKIAFYLYVPFVVIDLVVSSILLALGMMMMSPVTI 191 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 S+P K+I FV ++GWSLL + ++ + Sbjct: 192 SIPIKLILFVAMNGWSLLTKGMIAQY 217 >gi|237800001|ref|ZP_04588462.1| type III secretion system protein YscR [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022856|gb|EGI02913.1| type III secretion system protein YscR [Pseudomonas syringae pv. oryzae str. 1_6] Length = 217 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 67/201 (33%), Positives = 117/201 (58%), Gaps = 4/201 (1%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP---TLDR 105 +S+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +VM+P + + Sbjct: 18 MSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVAHEMQQ 77 Query: 106 SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165 + L N + + +A + V EP FM NT ++ ++ + Sbjct: 78 RVHEHPLELGNTEKLQASA-RTVIEPLQRFMTRNTDPDVVAHLLENTQRMWPKEMADQAS 136 Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225 + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP K+ Sbjct: 137 KEDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTLSLPLKL 196 Query: 226 IFFVLIDGWSLLVENLVKSFI 246 + FVL+ GWS L+++L S++ Sbjct: 197 LLFVLVSGWSRLLDSLFYSYM 217 >gi|238898597|ref|YP_002924278.1| type III surface presentation of antigens protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|75906094|gb|ABA29437.1| putative type III secretion system protein [Candidatus Hamiltonella defensa] gi|229466356|gb|ACQ68130.1| type III surface presentation of antigens protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 221 Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 119/198 (60%), Gaps = 5/198 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P ++ TC+ +F IVF ++R +G+ +P N+ + +AL + +VM P + ++I G + Sbjct: 18 PFVIASGTCYIKFSIVFVMVRNALGLQQIPSNMTLNGVALLLASFVMMPIV-KNIYEGHK 76 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKD--LSLFMDMAHSSHRNTDITKNDHIEYR 170 + ++ I+ V + + D L+ F + A S + D + + Sbjct: 77 NAQFDVRNLSSVIEFVENGLDGYRSYLVKYADPELTQFFEKAASDRKEEDFAGAEEEKPS 136 Query: 171 I--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 I L+P++ +SE++ +F+IGF I LPF+++D+++++I++A+GMMM+ P +IS+P K++ F Sbjct: 137 IFALLPAYALSEIKSAFKIGFYIYLPFVVVDLLISSILLALGMMMMSPVTISVPIKLVLF 196 Query: 229 VLIDGWSLLVENLVKSFI 246 V++DGW+L+ + ++ ++ Sbjct: 197 VVLDGWTLISKGMILQYM 214 >gi|330950824|gb|EGH51084.1| type III secretion system protein YscR [Pseudomonas syringae Cit 7] Length = 218 Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 72/199 (36%), Positives = 117/199 (58%), Gaps = 14/199 (7%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSI 107 LS+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +VM+P D Sbjct: 18 LSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVAHDIQQ 77 Query: 108 EMGIQPL-MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR------NTD 160 + PL ++N ++++ V EP FM TR D + + ++ R Sbjct: 78 RVHEHPLELSNADKLQSSLKVVIEPLQRFM---TRNTDPDVVAHLLENTQRMWPKEMADQ 134 Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220 KND + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++S Sbjct: 135 ANKNDLL---LAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTLS 191 Query: 221 LPFKVIFFVLIDGWSLLVE 239 LP K++ FVL+ GWS L++ Sbjct: 192 LPLKLLLFVLVSGWSRLLD 210 >gi|170690582|ref|ZP_02881749.1| Yop virulence translocation R [Burkholderia graminis C4D1M] gi|170145017|gb|EDT13178.1| Yop virulence translocation R [Burkholderia graminis C4D1M] Length = 164 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 101/166 (60%), Gaps = 8/166 (4%) Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTRE 142 +V+ +A+ ++ YVM+P +++ + Q T+ EPF F++ +T E Sbjct: 1 MVLNGVAILVSLYVMAPGRHAAMQSMQGQTIAGQPTQALIQVFSAAREPFRTFLQKHTNE 60 Query: 143 KDLSLFMDMAH---SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199 ++ F+ A+ + + +ND I +L P+F ++EL +F+IGFL+ + F++ID Sbjct: 61 REKRFFIRSANVVWPKDAASSLHENDLI---VLAPAFTLTELTDAFKIGFLLYIAFIVID 117 Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +I+A +++AMG+ + PT++++PFK++ FV++DGWS L+ LV ++ Sbjct: 118 LIIANVLLAMGLNQVTPTNVAIPFKLLLFVVMDGWSTLIHGLVMTY 163 >gi|213613057|ref|ZP_03370883.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 158 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 94/161 (58%), Gaps = 11/161 (6%) Query: 91 ALFMTFYVMSPTL----DR--SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144 AL ++ ++M PTL +R +++ P ++ + P+ F++ N+ EK+ Sbjct: 2 ALVLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKE 56 Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204 + F ++ + K ILIP+F +S+L ++F IG LI LPFL ID++++ Sbjct: 57 ANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISN 116 Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 I++AMGMMM+ P +ISLPFK++ F+L GW L + LV+SF Sbjct: 117 ILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF 157 >gi|333008529|gb|EGK27998.1| putative type III secretion apparatus integral membrane protein component [Shigella flexneri K-218] gi|333017443|gb|EGK36759.1| surface presentation of antigens protein spaP [Shigella flexneri K-227] gi|333020359|gb|EGK39623.1| putative type III secretion apparatus integral membrane protein component [Shigella flexneri K-304] Length = 167 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 100/166 (60%), Gaps = 15/166 (9%) Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMN--NQITETTAIQRVAE----PFWVFMRNNTRE 142 +AL M +VM P IE G + +N + + I R ++ + +++ +T Sbjct: 5 GIALIMALFVMKPI----IEAGYENYLNGPQKFDTISDIVRFSDSGLMEYKQYLKKHT-- 58 Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDM 200 DL L S N D+ ++ +Y + L+P++ +SE++ +F+IGF + LPF+++D+ Sbjct: 59 -DLELARFFQRSEEENADLKSAENNDYSLFSLLPAYALSEIKDAFKIGFYLYLPFVVVDL 117 Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 ++++I++A+GMMM+ P +IS+P K++ FV +DGW +L + L++ +I Sbjct: 118 VISSILLALGMMMMSPITISVPIKLVLFVALDGWGILSKALIEQYI 163 >gi|16761667|ref|NP_457284.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143151|ref|NP_806493.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052434|ref|ZP_03345312.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425708|ref|ZP_03358458.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580302|ref|ZP_03362128.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213609304|ref|ZP_03369130.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213649910|ref|ZP_03379963.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213853010|ref|ZP_03382542.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289810466|ref|ZP_06541095.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289829392|ref|ZP_06547004.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|2494565|sp|Q56023|SPAP_SALTI RecName: Full=Surface presentation of antigens protein spaP gi|25316657|pir||AF0851 secretory protein (associated with virulence) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|975771|gb|AAC43861.1| SpaP [Salmonella enterica subsp. enterica serovar Typhi] gi|16503968|emb|CAD05997.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Typhi] gi|29138784|gb|AAO70353.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 224 Score = 98.6 bits (244), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 123/207 (59%), Gaps = 11/207 (5%) Query: 50 SIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSIE 108 ++ P ++ TCF +F IVF ++R +G+ +P N+ + S+AL ++ +VM P + D + Sbjct: 15 TLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNSVALLLSMFVMWPIMHDAYVY 74 Query: 109 MGIQPLMNNQITE-TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR---NTDITKN 164 + + N I+ + + + + ++ + +++L F + A + T+ K Sbjct: 75 FEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYS-DRELVQFFENAQLKRQYGEETETVKR 133 Query: 165 DHIEYR-----ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 D E L+P++ +SE++ +F+IGF + LPF+++D++V+++++A+GMMM+ P +I Sbjct: 134 DKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALGMMMMSPVTI 193 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246 S P K++ FV +DGW+LL + L+ ++ Sbjct: 194 STPIKLVLFVALDGWTLLSKGLILQYM 220 >gi|12082757|gb|AAG48604.1|AF306650_1 SpaP [Sodalis glossinidius] Length = 189 Score = 98.6 bits (244), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 102/174 (58%), Gaps = 5/174 (2%) Query: 77 GMGSVPPNLVIISLALFMTFYVMSP-TLDRSIEMGIQPL-MNNQITETTAIQRVAEPFWV 134 G+ VP NL + +AL + ++M P D QP+ + + + ++ E + Sbjct: 4 GLQQVPSNLTLNGIALMLAMFIMGPIAGDAYNAYQEQPVALGSAASVLEFLENSMESYRH 63 Query: 135 FMRNNTREKDLSLFMDMAHSSHRNT-DITKNDHIEYRI-LIPSFMISELRRSFEIGFLII 192 +++ + L+ F D AH D + H + L+P++ +SE++ SF IGF + Sbjct: 64 YLQKYADPR-LTEFFDRAHGGGGAAHDAPASGHAPSMLALLPAYALSEIKDSFRIGFYLY 122 Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 LPF+++D++++++++A+GMMM+ P ++S+P K++ FV++DGW+LL + LV ++ Sbjct: 123 LPFVVVDLLISSVLLALGMMMMSPITLSVPIKLVLFVMLDGWTLLSQGLVLQYL 176 >gi|56414842|ref|YP_151917.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363770|ref|YP_002143407.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56129099|gb|AAV78605.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095247|emb|CAR60798.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 224 Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 58/207 (28%), Positives = 122/207 (58%), Gaps = 11/207 (5%) Query: 50 SIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSIE 108 ++ P ++ TCF +F IVF ++R +G+ +P N+ + +AL ++ +VM P + D + Sbjct: 15 TLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSMFVMWPIMHDAYVY 74 Query: 109 MGIQPLMNNQITE-TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR---NTDITKN 164 + + N I+ + + + + ++ + +++L F + A + T+ K Sbjct: 75 FEDEDVTFNDISSLSKHVDEGLDGYRDYLSKYS-DRELVQFFENAQLKRQYGEETETVKR 133 Query: 165 DHIEYR-----ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 D E L+P++ +SE++ +F+IGF + LPF+++D++V+++++A+GMMM+ P +I Sbjct: 134 DKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALGMMMMSPVTI 193 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246 S P K++ FV +DGW+LL + L+ ++ Sbjct: 194 STPIKLVLFVALDGWTLLSKGLILQYM 220 >gi|167550261|ref|ZP_02344018.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168463975|ref|ZP_02697892.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|238909657|ref|ZP_04653494.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|195633254|gb|EDX51668.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205324695|gb|EDZ12534.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 224 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/207 (28%), Positives = 123/207 (59%), Gaps = 11/207 (5%) Query: 50 SIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSIE 108 ++ P ++ TCF +F IVF ++R +G+ +P N+ + +AL ++ +VM P + D + Sbjct: 15 TLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSMFVMWPIMHDAYVY 74 Query: 109 MGIQPLMNNQITE-TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR---NTDITKN 164 + + N I+ + + + + ++ + +++L F + A + +T+ K Sbjct: 75 FEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYS-DRELVQFFENAQLKRQYGEDTETVKR 133 Query: 165 DHIEYR-----ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 D E L+P++ +SE++ +F+IGF + LPF+++D++V+++++A+GMMM+ P +I Sbjct: 134 DKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALGMMMMSPVTI 193 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246 S P K++ FV +DGW+LL + L+ ++ Sbjct: 194 STPIKLVLFVALDGWTLLSKGLILQYM 220 >gi|161502066|ref|YP_001569178.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|973278|gb|AAC43945.1| SpaP [Salmonella enterica] gi|973282|gb|AAC43948.1| SpaP [Salmonella enterica] gi|160863413|gb|ABX20036.1| hypothetical protein SARI_00083 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 224 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/207 (28%), Positives = 122/207 (58%), Gaps = 11/207 (5%) Query: 50 SIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSIE 108 ++ P ++ TCF +F IVF ++R +G+ +P N+ + +AL ++ +VM P + D + Sbjct: 15 TLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGIALLLSMFVMWPIMHDAYVY 74 Query: 109 MGIQPLMNNQITE-TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR---NTDITKN 164 + + N I+ + + + + ++ + +++L F + A + T+ K Sbjct: 75 FEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYS-DRELVQFFENAQLKRQYGEETEAVKR 133 Query: 165 DHIEYR-----ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 D E L+P++ +SE++ +F+IGF + LPF+++D++V+++++A+GMMM+ P +I Sbjct: 134 DKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALGMMMMSPVTI 193 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246 S P K++ FV +DGW+LL + L+ ++ Sbjct: 194 STPIKLVLFVALDGWTLLSKGLILQYM 220 >gi|16766196|ref|NP_461811.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62181392|ref|YP_217809.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161615802|ref|YP_001589767.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167993125|ref|ZP_02574220.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168230960|ref|ZP_02656018.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168235930|ref|ZP_02660988.1| type III secretion apparatus protein, YscR/HrcR family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168242627|ref|ZP_02667559.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261987|ref|ZP_02683960.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168820413|ref|ZP_02832413.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194445004|ref|YP_002042131.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448886|ref|YP_002046850.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194468694|ref|ZP_03074678.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194737581|ref|YP_002115842.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248290|ref|YP_002147787.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263760|ref|ZP_03163834.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198245023|ref|YP_002216859.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387886|ref|ZP_03214498.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928065|ref|ZP_03219265.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353833|ref|YP_002227634.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858152|ref|YP_002244803.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224584668|ref|YP_002638466.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|730796|sp|P40700|SPAP_SALTY RecName: Full=Surface presentation of antigens protein spaP gi|7448018|pir||T11207 spaP protein - Salmonella dublin gi|404291|emb|CAA51925.1| surface presentation of antigens [Salmonella enterica subsp. enterica serovar Typhimurium] gi|973258|gb|AAC43936.1| SpaP [Salmonella enterica subsp. enterica serovar Dublin] gi|973262|gb|AAC43966.1| SpaP [Salmonella enterica subsp. enterica serovar Senftenberg] gi|973266|gb|AAC43963.1| SpaP [Salmonella enterica subsp. enterica serovar Gallinarum] gi|973270|gb|AAC43939.1| SpaP [Salmonella enterica] gi|973274|gb|AAC43942.1| SpaP [Salmonella enterica] gi|973286|gb|AAC43951.1| SpaP [Salmonella enterica] gi|973290|gb|AAC43954.1| SpaP [Salmonella enterica] gi|973294|gb|AAC43957.1| SpaP [Salmonella enterica] gi|975763|gb|AAC43852.1| SpaP [Salmonella enterica] gi|975767|gb|AAC43858.1| SpaP [Salmonella enterica subsp. enterica serovar Typhisuis] gi|975775|gb|AAC43864.1| SpaP [Salmonella enterica subsp. enterica serovar Typhimurium] gi|975779|gb|AAC43855.1| SpaP [Salmonella enterica subsp. enterica serovar Enteritidis] gi|16421438|gb|AAL21770.1| surface presentation of antigens [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62129025|gb|AAX66728.1| surface presentation of antigens; secretory proteins [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161365166|gb|ABX68934.1| hypothetical protein SPAB_03593 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403667|gb|ACF63889.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407190|gb|ACF67409.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455058|gb|EDX43897.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194713083|gb|ACF92304.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197211993|gb|ACH49390.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197242015|gb|EDY24635.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197290886|gb|EDY30240.1| type III secretion apparatus protein, YscR/HrcR family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197939539|gb|ACH76872.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199604984|gb|EDZ03529.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204322387|gb|EDZ07584.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273614|emb|CAR38601.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205328735|gb|EDZ15499.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334464|gb|EDZ21228.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205338099|gb|EDZ24863.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205342860|gb|EDZ29624.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349049|gb|EDZ35680.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709955|emb|CAR34309.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|218988950|gb|ACL13613.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. salamae serovar Sofia] gi|224469195|gb|ACN47025.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261248026|emb|CBG25859.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995018|gb|ACY89903.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159449|emb|CBW18967.1| type III secretion system secretory apparatus [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913908|dbj|BAJ37882.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087295|emb|CBY97060.1| Surface presentation of antigens protein spaP [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223439|gb|EFX48505.1| Surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322614292|gb|EFY11223.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621644|gb|EFY18497.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624505|gb|EFY21338.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628836|gb|EFY25619.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633437|gb|EFY30179.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635987|gb|EFY32695.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639695|gb|EFY36380.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646878|gb|EFY43381.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650646|gb|EFY47051.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654741|gb|EFY51060.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658962|gb|EFY55215.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664471|gb|EFY60665.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668280|gb|EFY64437.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673740|gb|EFY69841.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677801|gb|EFY73864.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681369|gb|EFY77401.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322683771|gb|EFY79781.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715876|gb|EFZ07447.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323131242|gb|ADX18672.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323193840|gb|EFZ79043.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200310|gb|EFZ85392.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203187|gb|EFZ88216.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205566|gb|EFZ90531.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210077|gb|EFZ94980.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216380|gb|EGA01107.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221127|gb|EGA05558.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226949|gb|EGA11131.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230767|gb|EGA14885.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234882|gb|EGA18968.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238921|gb|EGA22971.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241621|gb|EGA25652.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248232|gb|EGA32168.1| type III secretion system protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251184|gb|EGA35057.1| type III secretion system protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256068|gb|EGA39806.1| type III secretion system protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263203|gb|EGA46741.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264294|gb|EGA47800.1| type III secretion system protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271120|gb|EGA54548.1| type III secretion system protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624621|gb|EGE30966.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628942|gb|EGE35285.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332989762|gb|AEF08745.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 224 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/207 (28%), Positives = 122/207 (58%), Gaps = 11/207 (5%) Query: 50 SIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSIE 108 ++ P ++ TCF +F IVF ++R +G+ +P N+ + +AL ++ +VM P + D + Sbjct: 15 TLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSMFVMWPIMHDAYVY 74 Query: 109 MGIQPLMNNQITE-TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR---NTDITKN 164 + + N I+ + + + + ++ + +++L F + A + T+ K Sbjct: 75 FEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYS-DRELVQFFENAQLKRQYGEETETVKR 133 Query: 165 DHIEYR-----ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 D E L+P++ +SE++ +F+IGF + LPF+++D++V+++++A+GMMM+ P +I Sbjct: 134 DKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALGMMMMSPVTI 193 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246 S P K++ FV +DGW+LL + L+ ++ Sbjct: 194 STPIKLVLFVALDGWTLLSKGLILQYM 220 >gi|973298|gb|AAC43960.1| SpaP [Salmonella enterica] gi|975743|gb|AAC43837.1| SpaP [Salmonella enterica] gi|975747|gb|AAC43840.1| SpaP [Salmonella enterica] gi|975751|gb|AAC43843.1| SpaP [Salmonella enterica] Length = 224 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/207 (28%), Positives = 122/207 (58%), Gaps = 11/207 (5%) Query: 50 SIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSIE 108 ++ P ++ TCF +F IVF ++R +G+ +P N+ + +AL ++ +VM P + D + Sbjct: 15 TLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSMFVMWPIMHDAYVY 74 Query: 109 MGIQPLMNNQITE-TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR---NTDITKN 164 + + N I+ + + + + ++ + +++L F + A + T+ K Sbjct: 75 FEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYS-DRELVQFFENAQLKRQYGEETEAVKR 133 Query: 165 DHIEYR-----ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 D E L+P++ +SE++ +F+IGF + LPF+++D++V+++++A+GMMM+ P +I Sbjct: 134 DKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALGMMMMSPVTI 193 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246 S P K++ FV +DGW+LL + L+ ++ Sbjct: 194 STPIKLVLFVALDGWTLLSKGLILQYM 220 >gi|975755|gb|AAC43846.1| SpaP [Salmonella enterica] gi|975759|gb|AAC43849.1| SpaP [Salmonella enterica] Length = 224 Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 120/204 (58%), Gaps = 11/204 (5%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSIEMGI 111 P ++ TCF +F IVF ++R +G+ +P N+ + +AL ++ +VM P + D + Sbjct: 18 PFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSMFVMWPIMHDAYVYFED 77 Query: 112 QPLMNNQITE-TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR---NTDITKNDHI 167 + + N I+ + + + + ++ + +++L F + A + T+ K D Sbjct: 78 EGVSFNDISSLSKHVDEGLDGYRDYLIKYS-DRELVQFFESAQLKRQYGEETETVKRDKE 136 Query: 168 EYR-----ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222 E L+P++ +SE++ +F+IGF + LPF+++D++V+++++A+GMMM+ P +IS P Sbjct: 137 EIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALGMMMMSPVTISTP 196 Query: 223 FKVIFFVLIDGWSLLVENLVKSFI 246 K++ FV +DGW+LL + L+ ++ Sbjct: 197 IKLVLFVALDGWTLLSKGLILQYM 220 >gi|218512614|ref|ZP_03509454.1| type III secretion system protein [Rhizobium etli 8C-3] Length = 148 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 51/119 (42%), Positives = 72/119 (60%) Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 +VA P FM + + F+ + N T + +L PSF++SEL R+FE Sbjct: 28 KVAAPLKDFMLKFSDAEVRDFFVQASQKIWANAPATPIASDDITVLTPSFLVSELTRAFE 87 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGFLI LPFL+ID V+ I++A+GM M+ PT +S P K++ FV IDGW L+E LV S+ Sbjct: 88 IGFLIYLPFLMIDFAVSAILVALGMQMMSPTVVSTPLKLLLFVSIDGWRRLLEGLVLSY 146 >gi|218670413|ref|ZP_03520084.1| flagellar biosynthesis protein FliP [Rhizobium etli GR56] Length = 84 Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 46/83 (55%), Positives = 61/83 (73%), Gaps = 1/83 (1%) Query: 1 MIRYC-FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 MIR+ F A + PEL A+ D++N+P D S++ WI+RTFG+ TILS+AP +LIMV Sbjct: 1 MIRFIIFLAAMMAVPELAVAQQLPTDLLNVPVDGSVAAWIIRTFGLLTILSVAPGILIMV 60 Query: 60 TCFPRFIIVFSILRTGMGMGSVP 82 T FPRFII FSILR+G+G+ S P Sbjct: 61 TSFPRFIIAFSILRSGIGLSSTP 83 >gi|289805085|ref|ZP_06535714.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 111 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 47/110 (42%), Positives = 72/110 (65%) Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195 M+ N+ EK+ + F ++ + K ILIP+F +S+L ++F IG LI LPF Sbjct: 1 MQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPF 60 Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 L ID++++ I++AMGMMM+ P +ISLPFK++ F+L GW L + LV+SF Sbjct: 61 LAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF 110 >gi|179741104|gb|ACB86705.1| HrcR [Pseudomonas fluorescens] Length = 162 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 57/159 (35%), Positives = 96/159 (60%), Gaps = 10/159 (6%) Query: 76 MGMGSVPPNLVIISLALFMTFYVMSP---TLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132 +G+ VPP++ I +AL T ++M+P + +++ + N Q + T + + EP Sbjct: 2 IGVQQVPPSMAINGIALAATLFIMAPVGYQVAENLKNAPLDMSNVQTLQQTGLVAI-EPL 60 Query: 133 WVFMRNNTREKDLSLFMDMAHSSHR--NTDITKNDHIEYRIL-IPSFMISELRRSFEIGF 189 FM+ N D + M SS R ++ ++ E IL IPSF++S+L+ FEIGF Sbjct: 61 RAFMKRNI---DPDVLTHMHESSARMWPPEMAQSTEREDLILLIPSFVLSQLQAGFEIGF 117 Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 LI +PF++ID+IV+ +++A+GM M+ P +ISLPFK++ F Sbjct: 118 LIYIPFIVIDLIVSNLLLALGMQMVSPMTISLPFKLLLF 156 >gi|8996030|gb|AAF82329.1|AF005744_8 YsaR [Yersinia enterocolitica] Length = 224 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 54/206 (26%), Positives = 109/206 (52%), Gaps = 14/206 (6%) Query: 50 SIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEM 109 S+ P ++ TC+ I + G + L + +AL ++ +VM P + Sbjct: 19 SLLPFVIAAGTCYLENINRANYGAQCDGGTTGTFRLALNGIALLLSLFVMMPVIQD---- 74 Query: 110 GIQPLMNNQITETTAIQRVAE-------PFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT 162 + M + + + + V + + +++ + + L+ F + + Sbjct: 75 -VNHYMRTEKVDFSNVDSVDKFIDGGLGSYTAYLKKYSDPELLNFFESLQQGRSEEESMA 133 Query: 163 KNDHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220 + D E + L+P++ +SE++ +FEIGF I LPF++ID+I+++I++A+GMMM+ P +IS Sbjct: 134 EADTREPALFSLLPAYALSEIKSAFEIGFYIYLPFVVIDLIISSILLALGMMMMSPVTIS 193 Query: 221 LPFKVIFFVLIDGWSLLVENLVKSFI 246 +P K+I FV IDGW+L+ + L+ ++ Sbjct: 194 VPVKLILFVAIDGWALISKGLIMQYM 219 >gi|255523691|ref|ZP_05390657.1| type III secretion system inner membrane P protein [Clostridium carboxidivorans P7] gi|255512560|gb|EET88834.1| type III secretion system inner membrane P protein [Clostridium carboxidivorans P7] Length = 70 Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 41/69 (59%), Positives = 60/69 (86%) Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236 MISEL+ +F IGF++ +PF+IID++VA+++M+MGM MLPP +SLPFK++ FV++DGW L Sbjct: 1 MISELKTAFMIGFMLYIPFMIIDLVVASVLMSMGMFMLPPAMVSLPFKLLLFVMVDGWYL 60 Query: 237 LVENLVKSF 245 LV++LV SF Sbjct: 61 LVKSLVSSF 69 >gi|179742187|gb|ACB86736.1| HrcR [uncultured soil bacterium] Length = 155 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 96/159 (60%), Gaps = 10/159 (6%) Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN-NQITE--TTAIQRVAEPF 132 +G+ VPPN+V+ +A+ ++ Y+M+P +++ G+Q +T+ T I EPF Sbjct: 1 IGVQQVPPNMVLNGIAIIVSVYIMAPVAFSAMQ-GMQANQAPGNVTQNVTAGIAAAREPF 59 Query: 133 WVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189 F+ + + ++ F+ A + + + + D I +L P+F ++EL +F+IGF Sbjct: 60 RTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLI---VLAPAFTLTELTDAFKIGF 116 Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 L+ + F+++D+++A ++MAMG+ + PT++++PFK++ F Sbjct: 117 LLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPFKLLLF 155 >gi|179742716|gb|ACB86743.1| HrcR [uncultured soil bacterium] Length = 160 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 14/162 (8%) Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTL--------DRSIEMGIQPLMNNQITETTAI 125 + +G+ VPPN+ +AL T +VM+P D +EMG + Q + T I Sbjct: 5 SDLGVQQVPPNMATHGIALAATMFVMAPVAHEIQQRVHDHPLEMGSTDRL--QASANTVI 62 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185 EP FM NT ++ +D + + + +P+F++SEL+ F Sbjct: 63 ----EPLQRFMTRNTDPDVIAHLLDNTQRMWPKDMADQASKSDLLLAVPAFVLSELQAGF 118 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227 +IGFLI +PF++ID+IV+ +++A+GM M+ P +ISLPFK++ Sbjct: 119 QIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTISLPFKLLL 160 >gi|149922183|ref|ZP_01910621.1| flagellar biosynthesis protein [Plesiocystis pacifica SIR-1] gi|149816923|gb|EDM76408.1| flagellar biosynthesis protein [Plesiocystis pacifica SIR-1] Length = 216 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 97/189 (51%), Gaps = 13/189 (6%) Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F + IV + +R G+ + P +++L + +T VM+P E L + Sbjct: 37 TAFTKIAIVLAAVRQGLSADRLLPVSSMLALGVALTAVVMAPVAGACAEALAALLDASAA 96 Query: 120 TETTAIQR---VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176 E A+++ EP FM +T +L +A +S R D + IL+P+F Sbjct: 97 GEGVALRQWLGTLEPLRGFMATHTDPAELE---RLAAASERGVD-------DPLILVPAF 146 Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236 ++SEL ++ L++LPF++ID+IVA + +G+ P + +LP KV+ F+ DGW L Sbjct: 147 LVSELGAGLQLAVLVLLPFVVIDLIVAEVQALLGLQQTPSVTFALPAKVLVFLAADGWHL 206 Query: 237 LVENLVKSF 245 +V LV+ + Sbjct: 207 VVVGLVEGY 215 >gi|179741187|gb|ACB86708.1| HrcR [Dyella japonica] Length = 154 Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 51/161 (31%), Positives = 94/161 (58%), Gaps = 16/161 (9%) Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI--TETTAIQRV----AE 130 G+ VPPN+V+ +A+ ++ Y+M+P ++ Q L QI T A+ +V E Sbjct: 1 GVQQVPPNMVLNGIAILVSLYIMAPIGMQAA----QSLQGQQIDGQPTQALIQVFSAARE 56 Query: 131 PFWVFMRNNTREKDLSLFMDMAH---SSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187 PF +F+ + E++ F+ A + +ND I +L P+F +SEL +F+I Sbjct: 57 PFRLFLEKHAHEREKRFFIRSASVVWPKEAARALHENDMI---VLAPAFTLSELTDAFKI 113 Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 GFL+ + F++ID+I+A +++AMG+ + PT++++P K++ F Sbjct: 114 GFLLYIAFIVIDLIIANVLLAMGLNQVQPTNVAIPLKLLLF 154 >gi|323155908|gb|EFZ42075.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli EPECa14] Length = 195 Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 91/159 (57%), Gaps = 10/159 (6%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP-TL 103 +F +LS+ PI +++ T F + IV IL+ +G+ VPPN+ + S++L +T ++MSP L Sbjct: 17 VFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIIL 76 Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 + + +P+ T++ Q+V E P+ F+ NT ++++ F A N Sbjct: 77 QINDNISQEPI---NYTDSDFFQKVDEKILSPYRGFLEKNTEKENVEFFERAAQKKLGNE 133 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 I K D + IL+P+F + +L +F+IGFL+ LPF+ I Sbjct: 134 TILKKDSL--FILLPAFTMGQLEAAFKIGFLLYLPFIAI 170 >gi|324119902|gb|EGC13781.1| FliP family protein [Escherichia coli E1167] Length = 172 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 36/93 (38%), Positives = 68/93 (73%) Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 +SS N +I +D+I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM Sbjct: 73 NSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 132 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+ P +IS P K+I FV +DGW++L + L+ + Sbjct: 133 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 165 >gi|293416108|ref|ZP_06658748.1| hypothetical protein ECDG_03710 [Escherichia coli B185] gi|291432297|gb|EFF05279.1| hypothetical protein ECDG_03710 [Escherichia coli B185] Length = 172 Score = 88.6 bits (218), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 36/93 (38%), Positives = 68/93 (73%) Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 +SS N +I +D+I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM Sbjct: 73 NSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 132 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+ P +IS P K+I FV +DGW++L + L+ + Sbjct: 133 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 165 >gi|320189199|gb|EFW63858.1| surface presentation of antigens protein SpaP [Escherichia coli O157:H7 str. EC1212] gi|326339060|gb|EGD62875.1| surface presentation of antigens protein SpaP [Escherichia coli O157:H7 str. 1044] gi|326343059|gb|EGD66827.1| surface presentation of antigens protein SpaP [Escherichia coli O157:H7 str. 1125] Length = 158 Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 36/93 (38%), Positives = 68/93 (73%) Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 +SS N +I +D+I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM Sbjct: 59 NSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 118 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+ P +IS P K+I FV +DGW++L + L+ + Sbjct: 119 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 151 >gi|323183415|gb|EFZ68812.1| putative type III secretion apparatus integral membrane protein component [Escherichia coli 1357] Length = 165 Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 36/93 (38%), Positives = 68/93 (73%) Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 +SS N +I +D+I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM Sbjct: 66 NSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 125 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+ P +IS P K+I FV +DGW++L + L+ + Sbjct: 126 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 158 >gi|330985216|gb|EGH83319.1| type III secretion system protein YscR [Pseudomonas syringae pv. lachrymans str. M301315] Length = 93 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 42/92 (45%), Positives = 65/92 (70%), Gaps = 3/92 (3%) Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 S D+ +D + +LIP+F+ SEL R+FEIGFL+ +PFL++D++V+ ++MAMGM M Sbjct: 3 SPEARADLRDDDLV---VLIPAFVSSELTRAFEIGFLLYIPFLVVDLLVSNVLMAMGMSM 59 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 + PT IS+P K+ FV + GWS L+ L+ S+ Sbjct: 60 VSPTLISIPLKIFLFVALSGWSRLMHGLILSY 91 >gi|320202506|gb|EFW77076.1| surface presentation of antigens protein SpaP [Escherichia coli EC4100B] Length = 126 Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 36/93 (38%), Positives = 68/93 (73%) Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 +SS N +I +D+I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM Sbjct: 27 NSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 86 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+ P +IS P K+I FV +DGW++L + L+ + Sbjct: 87 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 119 >gi|331643550|ref|ZP_08344681.1| surface presentation of antigens secretory protein [Escherichia coli H736] gi|331037021|gb|EGI09245.1| surface presentation of antigens secretory protein [Escherichia coli H736] Length = 172 Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 36/93 (38%), Positives = 68/93 (73%) Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 +SS N +I +D+I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM Sbjct: 73 NSSEDNEEIFDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 132 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+ P +IS P K+I FV +DGW++L + L+ + Sbjct: 133 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 165 >gi|179741127|gb|ACB86706.1| HrcR [Burkholderia terrae] Length = 155 Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 98/162 (60%), Gaps = 16/162 (9%) Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ----ITE--TTAIQRVA 129 +G+ VPPN+V+ +A+ ++ Y+M+P +++ G+Q NQ +T+ T I Sbjct: 1 IGVQQVPPNMVLNGIAIIVSVYIMAPVAFSAMQ-GMQA---NQAPGNVTQNVTAGIAAAR 56 Query: 130 EPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 EPF F+ + + ++ F+ A + + + + D I +L P+F ++EL +F+ Sbjct: 57 EPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLI---VLAPAFTLTELTDAFK 113 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 IGFL+ + F+++++++A ++MAMG+ + PT++++PFK++ F Sbjct: 114 IGFLLYIGFIVVNLVIANVLMAMGLNQVQPTNVAIPFKLLLF 155 >gi|179742060|gb|ACB86734.1| HrcR [uncultured soil bacterium] Length = 157 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 96/162 (59%), Gaps = 16/162 (9%) Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ----ITE--TTAIQRVA 129 +G+ VPPN+V+ +A+ ++ Y+M+P +++ G+Q NQ +T+ T I Sbjct: 1 IGVQQVPPNMVLNGIAIIVSVYIMAPVAFSAMQ-GMQA---NQAPGNVTQNVTAGIAAAR 56 Query: 130 EPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 EPF F+ + + ++ F+ A + + + + D I +L P+F ++EL +F+ Sbjct: 57 EPFRTFLEAHAKSRERQFFLRSATALWPAQQAKALKDTDLI---VLAPAFTLTELTDAFK 113 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 IGFL+ + F+++D+++A ++MAMG+ PT++++P K++ F Sbjct: 114 IGFLLYIGFIVVDLVIANVLMAMGLNQAQPTNVAIPLKLLLF 155 >gi|312972918|ref|ZP_07787091.1| putative type III secretion apparatus integral membrane protein component [Escherichia coli 1827-70] gi|310332860|gb|EFQ00074.1| putative type III secretion apparatus integral membrane protein component [Escherichia coli 1827-70] gi|332344757|gb|AEE58091.1| Type III secretion apparatus protein EpaP [Escherichia coli UMNK88] Length = 126 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 36/93 (38%), Positives = 68/93 (73%) Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 +SS N +I +D+I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM Sbjct: 27 NSSEDNEEIFDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 86 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+ P +IS P K+I FV +DGW++L + L+ + Sbjct: 87 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 119 >gi|179741593|gb|ACB86720.1| HrcR [uncultured soil bacterium] Length = 157 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 95/159 (59%), Gaps = 10/159 (6%) Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN-NQITE--TTAIQRVAEPF 132 +G+ VPPN+V+ +A+ ++ Y+M+P +++ G+Q +T+ T I EPF Sbjct: 1 IGVQQVPPNMVLNGIAIIVSVYIMAPVAFSAMQ-GMQANQAPGNVTQNVTAGITAAREPF 59 Query: 133 WVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189 F+ + + ++ F+ A + + + + D I +L P+F ++EL +F+IGF Sbjct: 60 RTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLI---VLAPAFTLTELTDAFKIGF 116 Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 L+ + F+++D+++A ++MAMG+ + PT++++P K++ F Sbjct: 117 LLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 155 >gi|179742029|gb|ACB86733.1| HrcR [uncultured soil bacterium] Length = 157 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 95/162 (58%), Gaps = 16/162 (9%) Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ----ITE--TTAIQRVA 129 +G+ VPPN+V+ +A+ ++ Y+M+P ++ Q + NQ +T+ T I Sbjct: 1 IGVQQVPPNMVLNGIAIIVSVYIMAPVAFSAM----QGMQANQAPGNVTQNVTAGIAAAR 56 Query: 130 EPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 EPF F+ + + ++ F+ A + + + + D I +L P+F ++EL +F+ Sbjct: 57 EPFRTFLEVHAQSRERQFFLRSATALWPAQQAKALKDTDLI---VLAPAFTLTELTGAFK 113 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 IGFL+ + F+++D+++A ++MAMG+ + PT++++P K++ F Sbjct: 114 IGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 155 >gi|331654351|ref|ZP_08355351.1| surface presentation of antigens secretory protein [Escherichia coli M718] gi|331047733|gb|EGI19810.1| surface presentation of antigens secretory protein [Escherichia coli M718] Length = 172 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 35/93 (37%), Positives = 67/93 (72%) Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 + S N +I +D+I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM Sbjct: 73 NGSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 132 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+ P +IS P K+I FV +DGW++L + L+ + Sbjct: 133 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 165 >gi|179741780|gb|ACB86726.1| HrcR [uncultured soil bacterium] Length = 157 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 95/159 (59%), Gaps = 10/159 (6%) Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN-NQITE--TTAIQRVAEPF 132 +G+ VPPN+V+ +A+ ++ Y+ +P +++ G+Q +T+ T I EPF Sbjct: 1 IGVQQVPPNMVLNGIAIIVSVYITAPVAFSAMQ-GMQANQAPGNVTQNVTAGIAAAREPF 59 Query: 133 WVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189 F++ + + ++ F+ A + + + + D I +L P+F ++EL +F+IGF Sbjct: 60 RTFLKAHAQSRERQFFLRSATALWPAQQAKALKDTDLI---VLAPAFTLTELTDAFKIGF 116 Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 L+ + F+++D+++A ++MAMG+ + PT++++P K++ F Sbjct: 117 LLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 155 >gi|327251616|gb|EGE63302.1| putative type III secretion apparatus integral membrane protein component [Escherichia coli STEC_7v] Length = 158 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 35/93 (37%), Positives = 68/93 (73%) Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 +SS N +I +++I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM Sbjct: 59 NSSEDNEEIIDDENISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 118 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+ P +IS P K+I FV +DGW++L + L+ + Sbjct: 119 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 151 >gi|179742748|gb|ACB86744.1| HrcR [uncultured soil bacterium] Length = 158 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 94/167 (56%), Gaps = 25/167 (14%) Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA--------IQRVAEP 131 VPP V+ +A+ ++ ++M+P +G++ + Q++ + EP Sbjct: 3 QVPPTSVLNGVAIMVSCFIMAP-------VGMEAMHRAQLSSDAGSGMQVMPLLDAAREP 55 Query: 132 FWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188 F VF++ + E++ + F+ A R ++ ++D I +L P+F +SEL +F++G Sbjct: 56 FRVFLKRHASEREKAFFLRSAREIWPPERAAELKQDDLI---VLAPAFTLSELTAAFKMG 112 Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235 FL+ L F++ID+++A+++MA+G+ + PT +++P +++ F GW Sbjct: 113 FLLYLAFIVIDLVIASVLMALGLSQVDPTDVAIPLELLLF----GWG 155 >gi|179741157|gb|ACB86707.1| HrcR [Burkholderia terrae] Length = 154 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 92/156 (58%), Gaps = 10/156 (6%) Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN-NQITE--TTAIQRVAEPFWVF 135 VPPN+V+ +A+ ++ Y+M+P +++ G+Q +T+ T I EPF F Sbjct: 3 AQVPPNMVLNGIAIIVSVYIMAPVAFSAMQ-GMQANQAPGNVTQNVTAGIAAAREPFRTF 61 Query: 136 MRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192 + + + ++ F+ A + + + + D I +L P+F ++EL +F+IGFL+ Sbjct: 62 LEAHAQSRERQFFLRSATALWPAQQAKALKDTDLI---VLAPAFTLTELTDAFKIGFLLY 118 Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 + F+++D+++A ++MAMG+ + PT++++P K++ F Sbjct: 119 IGFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 154 >gi|255523692|ref|ZP_05390658.1| type III secretion system inner membrane P protein [Clostridium carboxidivorans P7] gi|255512561|gb|EET88835.1| type III secretion system inner membrane P protein [Clostridium carboxidivorans P7] Length = 164 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 43/98 (43%), Positives = 58/98 (59%) Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 TIL+I P ++M+T F R I+VF LR MG PPN ++I LALF+T ++M P + Sbjct: 63 TILTILPSFIMMMTSFVRIIVVFGFLRGAMGTQQSPPNTILIGLALFLTVFIMQPVYSKV 122 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144 IQP M N+IT+ AI A+P FM T +KD Sbjct: 123 NTNAIQPYMQNKITQEQAIDEGAKPLRQFMLKYTYKKD 160 >gi|179741500|gb|ACB86717.1| HrcR [uncultured soil bacterium] Length = 157 Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 96/162 (59%), Gaps = 16/162 (9%) Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ----ITE--TTAIQRVA 129 +G+ VPPN+V+ +A+ ++ Y+M+P +++ G+Q NQ +T+ T I Sbjct: 1 IGVQQVPPNMVLNGIAIIVSVYIMAPVAFSAMQ-GMQA---NQAPGNVTQNVTAGIAAAR 56 Query: 130 EPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 EPF F+ + + ++ F+ A + + + + D I +L P+F ++EL +F+ Sbjct: 57 EPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLI---VLAPAFTLTELTDAFK 113 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 IGFL+ + F+++D+++A ++MAMG+ + PT++++P K++ Sbjct: 114 IGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLL 155 >gi|179741622|gb|ACB86721.1| HrcR [uncultured soil bacterium] Length = 157 Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 95/159 (59%), Gaps = 10/159 (6%) Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN-NQITE--TTAIQRVAEPF 132 +G+ VPPN+V+ +A+ ++ ++M+P +++ G+Q +T+ T I EPF Sbjct: 1 IGVQQVPPNMVLNGIAIIVSVHIMAPVAFSAMQ-GMQANQAPGNVTQNVTAGIAAAREPF 59 Query: 133 WVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189 F+ + + ++ F+ A + + + + D I +L P+F ++EL +F+IGF Sbjct: 60 RTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLI---VLAPAFTLTELTDAFKIGF 116 Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 L+ + F+++D+++A ++MAMG+ + PT++++P K++ F Sbjct: 117 LLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 155 >gi|179741249|gb|ACB86709.1| HrcR [uncultured soil bacterium] Length = 157 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 95/161 (59%), Gaps = 14/161 (8%) Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL-----MNNQITETTAIQRVAE 130 +G+ VPPN+V+ +A+ ++ Y+M+P +++ G+Q + +T A RV Sbjct: 1 IGVQQVPPNMVLNGIAIIVSVYIMAPVAFSAMQ-GMQANQAPGNVTQNVTAGIAAARV-- 57 Query: 131 PFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187 PF F+ + + + F+ A + + + + D I +L P+F ++EL +F+I Sbjct: 58 PFRTFLEAHAQSCERQFFLRSATALWPAQQAKALKDTDLI---VLAPAFTLTELTDAFKI 114 Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 GFL+ + F+++D+++A ++MAMG+ + PT++++PFK++ F Sbjct: 115 GFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPFKLLLF 155 >gi|179741467|gb|ACB86716.1| HrcR [uncultured soil bacterium] Length = 122 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 42/112 (37%), Positives = 72/112 (64%), Gaps = 3/112 (2%) Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176 + ET + + EP F+ ++R + + F+ A + +D ++ I +P+F Sbjct: 12 GNMVETANLAK--EPLREFLLKHSRPNERAFFLRTAQRVDPARSVEMSDR-DFVITVPAF 68 Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 +++EL +F+IGFLI LPFL+ID++++ I++AMGMMML PT+ISLP K++ F Sbjct: 69 VVNELSVAFQIGFLIFLPFLVIDLVISNILLAMGMMMLSPTTISLPLKLLLF 120 >gi|179741693|gb|ACB86723.1| HrcR [uncultured soil bacterium] Length = 157 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 96/162 (59%), Gaps = 16/162 (9%) Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ----ITE--TTAIQRVA 129 +G+ VP N+V+ +A+ ++ Y+M+P +++ G+Q NQ +T+ T I Sbjct: 1 IGVQQVPLNMVLNGIAIIVSVYIMAPVAFSAMQ-GMQA---NQAPGNVTQNVTAGIAAAR 56 Query: 130 EPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 EPF F+ + + ++ F+ A + + + + D I +L P+F ++EL +F+ Sbjct: 57 EPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLI---VLAPAFTLTELTDAFK 113 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 IGFL+ + F+++D+++A ++MAMG+ + PT++++P K++ F Sbjct: 114 IGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 155 >gi|226326424|ref|ZP_03801942.1| hypothetical protein PROPEN_00272 [Proteus penneri ATCC 35198] gi|225205207|gb|EEG87561.1| hypothetical protein PROPEN_00272 [Proteus penneri ATCC 35198] Length = 105 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 35/95 (36%), Positives = 68/95 (71%), Gaps = 2/95 (2%) Query: 154 SSHRNTDITKNDHIEYRIL--IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 +R +++IE +L +P++ +SE++ +F IGF + LPF++ID++V+ I++A+GM Sbjct: 5 QGNRPESHGDSENIESSLLSLLPAYALSEIKSAFIIGFYLYLPFIVIDLVVSCILLALGM 64 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 MM+ P ++S+P K+I F+ +DGW+LL + L+ ++ Sbjct: 65 MMMSPITLSVPLKLILFIAMDGWTLLSKGLINQYL 99 >gi|179741073|gb|ACB86704.1| HrcR [Burkholderia cepacia] Length = 157 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 87/154 (56%), Gaps = 3/154 (1%) Query: 76 MGMGSVPPNLVIISLALFMTFYVMSP---TLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132 +G+ VPPN+V+ +A+ ++ YV++P R++ P + A EPF Sbjct: 3 IGVQQVPPNMVLNGIAILVSAYVLAPVAIAASRNLPTDRPPANRVRRRWMQAFSAAREPF 62 Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192 F+ + +++ F+ A ++ + +L P+F ++EL +F+IGFL+ Sbjct: 63 RTFLEAHAHQRERRFFVRSAAMVWPKDVASELKDTDLFVLAPAFTLTELTEAFKIGFLLY 122 Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 + F+++D+I+A +++AMG+ + PT++++PFK++ Sbjct: 123 VAFIVVDLIIANVLLAMGLNQVQPTNVAIPFKLL 156 >gi|179742405|gb|ACB86739.1| HrcR [uncultured soil bacterium] Length = 154 Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 89/158 (56%), Gaps = 34/158 (21%) Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTL--------DRSIEMGIQPLMNNQITETTAIQRV 128 G+ VPPN+ + +AL T +VM+P D +EMG + + +T+A+ V Sbjct: 2 GVQQVPPNMAMYGIALAATMFVMAPVAHDIQQRVHDHPLEMG-----STEKLQTSAM-TV 55 Query: 129 AEPFWVFMRNNTREKDLSLFM----------DMAHSSHRNTDITKNDHIEYRILIPSFMI 178 EP FM NT + D+S + DMA + TKND + + +P+F++ Sbjct: 56 IEPLQRFMTRNT-DPDVSAHLLDNTQRMWPKDMADQA------TKNDLL---LAVPAFVL 105 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P Sbjct: 106 SELQAGFQIGFLIYIPFIVIDLIVSNLLLALGMQMVSP 143 >gi|225181597|ref|ZP_03735038.1| type III secretion system inner membrane P protein [Dethiobacter alkaliphilus AHT 1] gi|225167705|gb|EEG76515.1| type III secretion system inner membrane P protein [Dethiobacter alkaliphilus AHT 1] Length = 131 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 44/123 (35%), Positives = 67/123 (54%), Gaps = 4/123 (3%) Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R ++V +R + PPN VII LALF+TF++M+P R E I P + ++I Sbjct: 2 TSFTRIVVVLGFVRNALATQQTPPNRVIIGLALFLTFFIMAPIYSRVNETAILPSLEDEI 61 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 T A+ + P FM T EK L LF++++ T D + +L+P+F+IS Sbjct: 62 TSEYALATRSPPLERFMVQQTTEKVLPLFVNLSDGERPET----MDDLPMHVLVPAFVIS 117 Query: 180 ELR 182 EL+ Sbjct: 118 ELK 120 >gi|270488967|ref|ZP_06206041.1| FliP family protein [Yersinia pestis KIM D27] gi|270337471|gb|EFA48248.1| FliP family protein [Yersinia pestis KIM D27] Length = 169 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 50/148 (33%), Positives = 84/148 (56%), Gaps = 6/148 (4%) Query: 48 ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRS 106 +LS+ P+L++M T F + +VFS+LR +G+ VPPN+ I LAL +T ++M+P LD Sbjct: 16 MLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQ 75 Query: 107 IEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSS--HRNTDITK 163 + + L N+ I Q P+ F++ NT + ++ F D+ + R D K Sbjct: 76 ARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVK 135 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLI 191 D + IL+P+F +S+L +F+IG L+ Sbjct: 136 PDSL--LILMPAFTLSQLNEAFKIGLLL 161 >gi|179741717|gb|ACB86724.1| HrcR [uncultured soil bacterium] Length = 158 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 88/158 (55%), Gaps = 8/158 (5%) Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFW 133 +G+ VPPN+V+ +A+ + P +++ +T+ T I EPF Sbjct: 2 IGVQQVPPNMVLNGIAIIVLASPTPPVAFSAMQGKQANQAPGNVTQNVTAGIAAAREPFC 61 Query: 134 VFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190 F+ + + ++ F+ A + + + + D I +L P+F ++EL +F+IGFL Sbjct: 62 TFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLI---VLAPAFTLTELTDAFKIGFL 118 Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 + + F+++D+++A ++MAMG+ + PT++++PFK++ F Sbjct: 119 LYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPFKLLLF 156 >gi|179741438|gb|ACB86715.1| HrcR [uncultured soil bacterium] Length = 157 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 93/159 (58%), Gaps = 10/159 (6%) Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN-NQITE--TTAIQRVAEPF 132 +G+ VPPN+V+ +A+ ++ + +P +++ G+Q +T+ T I EPF Sbjct: 1 IGVQQVPPNMVLNGIAIIVSVSLPAPVAFSAMQ-GMQANQAPGNVTQNVTAGIAAAREPF 59 Query: 133 WVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189 F+ + + ++ F+ A + + + + D I +L P+F ++EL +F+IGF Sbjct: 60 RTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLI---VLAPAFTLTELTDAFKIGF 116 Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 L+ + F+++D+++A ++MAMG+ + PT++++P K++ F Sbjct: 117 LLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 155 >gi|179742484|gb|ACB86740.1| HrcR [uncultured soil bacterium] Length = 153 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 88/154 (57%), Gaps = 16/154 (10%) Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE--TTAIQRV----AEPFWVFM 136 PN+V+ +A+ ++ Y+M+P ++ Q L QI T A+ +V EPF +F+ Sbjct: 7 PNMVLNGIAILVSLYIMAPIGMQAA----QSLQGQQIDGRPTQALIQVFSAAREPFRLFL 62 Query: 137 RNNTREKDLSLFMDMAH---SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193 + E+ F+ A + +ND I +L P+F +SEL +F+IGFL+ + Sbjct: 63 EKHAHERGKRFFIRSASVVWPKEAARALHENDMI---VLAPAFTLSELTDAFKIGFLLYI 119 Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227 F++ID+I+A +++AMG+ + PT++++P K++ Sbjct: 120 AFIVIDLIIANVLLAMGLNQVQPTNVAIPLKLLL 153 >gi|323267198|gb|EGA50683.1| type III secretion system protein YscR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] Length = 69 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 36/68 (52%), Positives = 53/68 (77%) Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 +S+L ++F IG LI LPFL ID++++ I++AMGMMM+ P +ISLPFK++ F+L GW L Sbjct: 1 MSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLT 60 Query: 238 VENLVKSF 245 + LV+SF Sbjct: 61 LAQLVQSF 68 >gi|179741659|gb|ACB86722.1| HrcR [uncultured soil bacterium] Length = 157 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 94/162 (58%), Gaps = 16/162 (9%) Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ----ITE--TTAIQRVA 129 +G+ VP N+V+ +A+ ++ + +P +++ G+Q NQ +T+ T I Sbjct: 1 IGVQQVPLNMVLNGIAIIVSVSITAPVAFSAMQ-GMQA---NQAPGNVTQNVTAGIAAAR 56 Query: 130 EPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 EPF F+ + + ++ F+ A + + + + D I +L P+F ++EL +F+ Sbjct: 57 EPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLI---VLAPAFTLTELTDAFK 113 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 IGFL+ + F+++D+++A ++MAMG+ + PT++++P K++ F Sbjct: 114 IGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 155 >gi|662864|gb|AAA79756.1| flagellar protein [Pseudomonas aeruginosa] Length = 141 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 37/84 (44%), Positives = 53/84 (63%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 I T LS P ++++T F R IIVFSILR +G+ S P N V++ LALF+T +VM+P D Sbjct: 56 IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFD 115 Query: 105 RSIEMGIQPLMNNQITETTAIQRV 128 + +QP +N QI A+Q+ Sbjct: 116 KINSQALQPYLNEQIPAQEALQKA 139 >gi|179741303|gb|ACB86711.1| HrcR [uncultured soil bacterium] Length = 111 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 68/112 (60%), Gaps = 6/112 (5%) Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSF 176 ET I EPF F+ + + ++ F+ A + + + + D I +L P+F Sbjct: 1 NETAGIAAAREPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLI---VLAPAF 57 Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 ++EL +F+IGFL+ + F+++D+++A ++MAMG+ + PT++++PFK++ F Sbjct: 58 TLTELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPFKLLLF 109 >gi|207110871|ref|ZP_03245033.1| flagellar biosynthesis protein FliP [Helicobacter pylori HPKX_438_CA4C1] Length = 78 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 49/69 (71%) Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139 PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ A PF FM N Sbjct: 3 QTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLKN 62 Query: 140 TREKDLSLF 148 TREKDL+LF Sbjct: 63 TREKDLALF 71 >gi|179741043|gb|ACB86703.1| HrcR [Burkholderia phenazinium] Length = 134 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 76/137 (55%), Gaps = 8/137 (5%) Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET--TAIQRVAEPFWVFMR 137 VPPN+VI +A+ ++ YVM+P ++ + M Q T+ EPF F++ Sbjct: 1 QVPPNMVINGIAVLVSLYVMAPIGMQAAQSMQGQAMAPQPTQALIQMFSAAREPFRGFLK 60 Query: 138 NNTREKDLSLFMDMAH---SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194 + +E++ FM A ++ D I +L P+F +SEL +F+IGFL+ + Sbjct: 61 AHAKEREKRFFMHSASIVWPKEAANNLHDTDLI---VLAPAFTLSELADAFKIGFLLYIA 117 Query: 195 FLIIDMIVATIVMAMGM 211 F+++D+I+A +++AMG+ Sbjct: 118 FIVVDLIIANVLLAMGL 134 >gi|179741749|gb|ACB86725.1| HrcR [uncultured soil bacterium] Length = 122 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 67/110 (60%), Gaps = 6/110 (5%) Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMI 178 T I EPF F+ + + ++ F+ A + + + + D I +L P+F + Sbjct: 14 TAGIAAAREPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLI---VLAPAFTL 70 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 +EL +F+IGFL+ + F+++D+++A ++MAMG+ + PT++++PFK++ F Sbjct: 71 TELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPFKLLLF 120 >gi|179741968|gb|ACB86731.1| HrcR [uncultured soil bacterium] Length = 119 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 67/110 (60%), Gaps = 6/110 (5%) Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMI 178 T I EPF F+ + + ++ F+ A + + + + D I +L P+F + Sbjct: 11 TAGIAAAREPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLI---VLAPAFTL 67 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 +EL +F+IGFL+ + F+++D+++A ++MAMG+ + PT++++PFK++ F Sbjct: 68 TELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPFKLLLF 117 >gi|194350737|gb|ACF53799.1| HrcR [Erwinia psidii] Length = 128 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 37/103 (35%), Positives = 68/103 (66%), Gaps = 6/103 (5%) Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYR---ILIPSFMISELRRSFE 186 EP FM +R D + + +S + + ++ + + ++IP+F++SEL+ F+ Sbjct: 29 EPLQTFM---SRNVDPDILTHLHENSLQMWPASLSEKVNTQNLLLVIPAFVLSELQAGFK 85 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229 IGFLI +PF++ID+IV+ +++A+GM M+ P ++SLPFK++ FV Sbjct: 86 IGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPFKLLLFV 128 >gi|194350756|gb|ACF53807.1| HrcR [Pectobacterium carotovorum subsp. carotovorum] Length = 127 Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 39/110 (35%), Positives = 69/110 (62%), Gaps = 6/110 (5%) Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYR---ILIPSFMIS 179 T++ P FM +NT D + + + +S R +D + ++IP+F++S Sbjct: 21 TSVTNGVVPLQKFMTHNT---DPDILIHLQENSVRMWPKEMSDSVNKDNLLLVIPAFVLS 77 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229 EL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP K++ FV Sbjct: 78 ELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPLKMLLFV 127 >gi|323178895|gb|EFZ64471.1| harpin secretion protein hrpW [Escherichia coli 1180] Length = 68 Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 31/64 (48%), Positives = 50/64 (78%) Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 +L +F+IGFL+ LPF+ ID+I++ I++A+GMMM+ P +IS+PFK++ F+L+ GW L Sbjct: 2 GQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQKLF 61 Query: 239 ENLV 242 E L+ Sbjct: 62 EFLL 65 >gi|179741902|gb|ACB86729.1| HrcR [uncultured soil bacterium] Length = 133 Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 66/110 (60%), Gaps = 6/110 (5%) Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMI 178 T I EPF F+ + + ++ F+ A + + + + D I +L P+F + Sbjct: 25 TAGIAAAREPFRTFLEAHAQSRERQFFLRSATALWPAQQGKALKDTDLI---VLAPAFTL 81 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 +EL +F+IGFL+ + F+++D+++A ++MAMG+ + PT++++P K++ F Sbjct: 82 TELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 131 >gi|194350758|gb|ACF53808.1| HrcR [Pectobacterium betavasculorum] gi|194350760|gb|ACF53809.1| HrcR [Pectobacterium betavasculorum] gi|194350764|gb|ACF53811.1| HrcR [Pectobacterium carotovorum subsp. brasiliensis] gi|194350766|gb|ACF53812.1| HrcR [Pectobacterium wasabiae WPP163] Length = 127 Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 73/113 (64%), Gaps = 12/113 (10%) Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSS------HRNTDITKNDHIEYRILIPSF 176 T++ P FM +NT D + + + +S + +++K++ + ++IP+F Sbjct: 21 TSVTNGVAPLQKFMTHNT---DPDILIHLQENSVQMWPKEMSENVSKDNLL---LVIPAF 74 Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229 ++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP K++ FV Sbjct: 75 VLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPLKMLLFV 127 >gi|213419213|ref|ZP_03352279.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 120 Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 74/113 (65%), Gaps = 8/113 (7%) Query: 142 EKDLSLFMDMAHSSHR---NTDITKNDHIEYR-----ILIPSFMISELRRSFEIGFLIIL 193 +++L F + A + T+ K D E L+P++ +SE++ +F+IGF + L Sbjct: 4 DRELVQFFENAQLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYL 63 Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 PF+++D++V+++++A+GMMM+ P +IS P K++ FV +DGW+LL + L+ ++ Sbjct: 64 PFVVVDLVVSSVLLALGMMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQYM 116 >gi|254285292|ref|ZP_04960257.1| Flagellar biosynthesis pathway, component FliP [Vibrio cholerae AM-19226] gi|71480611|gb|AAZ32233.1| VcsR2 [Vibrio cholerae non-O1/non-O139] gi|150424564|gb|EDN16500.1| Flagellar biosynthesis pathway, component FliP [Vibrio cholerae AM-19226] Length = 224 Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 53/208 (25%), Positives = 97/208 (46%), Gaps = 32/208 (15%) Query: 54 ILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQP 113 + I T F ++ IV +I++ +G +PP +V+ LA M + P + IE I+P Sbjct: 28 VFFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNGVWPQIQPGIER-IKP 86 Query: 114 LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-----------HSSHRNTDIT 162 + Q + Q + NN K+++++ ++ H+ + +T Sbjct: 87 YFSQQEKQELN-QEI---------NNDLPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLT 136 Query: 163 ---------KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 +H ++ I S +I +L + FE+G + + F+ ID ++A I+ +GM M Sbjct: 137 AIIELPFNFDKEHDTFKYFIGS-LIYDLYQGFELGLKLYIVFVSIDFLIAVILSGVGMTM 195 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENL 241 L PT IS P K+ F D W++L + L Sbjct: 196 LSPTVISTPVKLAVFYFSDSWTILFKAL 223 >gi|194350721|gb|ACF53791.1| HrcR [Erwinia amylovora] Length = 127 Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 40/112 (35%), Positives = 70/112 (62%), Gaps = 10/112 (8%) Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN-----TDITKNDHIEYRILIPSFM 177 T++ P FM +NT D + + + +S R D D++ ++IP+F+ Sbjct: 21 TSVTNGVAPLQKFMTHNT---DPDILIHLQENSVRMWPKEMLDSVNKDNL--LLVIPAFV 75 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229 +SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP K++ FV Sbjct: 76 LSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPLKMLLFV 127 >gi|158834403|gb|ABW81996.1| type III secretion system inner membrane component [Candidatus Hamiltonella defensa] Length = 155 Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 85/152 (55%), Gaps = 5/152 (3%) Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 TC+ +F IVF ++R +G+ +P N+ + +AL + +VM P + ++I G + + Sbjct: 5 TCYIKFSIVFVMVRNALGLQQIPSNMTLNGVALLLASFVMMPIV-KNIYEGYKNAQFDVR 63 Query: 120 TETTAIQRVAEPFWVFMRNNTREKD--LSLFMDMAHSSHRNTDITKNDHIEYRI--LIPS 175 ++ I+ V + + D L+ F + A S + D + + I L+P+ Sbjct: 64 NLSSVIEFVENGLDGYRSYLVKYADPELTQFFEKAASDRKEEDFAGAEEEKPSIFALLPA 123 Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 + +SE++ +F+IGF I LPF+++D+++++I++ Sbjct: 124 YALSEIKSAFKIGFYIYLPFVVVDLLISSILL 155 >gi|229515154|ref|ZP_04404614.1| surface presentation of antigens protein SpaP [Vibrio cholerae TMA 21] gi|229347859|gb|EEO12818.1| surface presentation of antigens protein SpaP [Vibrio cholerae TMA 21] Length = 228 Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 53/208 (25%), Positives = 97/208 (46%), Gaps = 32/208 (15%) Query: 54 ILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQP 113 + I T F ++ IV +I++ +G +PP +V+ LA M + P + IE I+P Sbjct: 32 VFFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNGVWPQIQPGIER-IKP 90 Query: 114 LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-----------HSSHRNTDIT 162 + Q + Q + NN K+++++ ++ H+ + +T Sbjct: 91 YFSQQEKQELN-QEI---------NNDLPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLT 140 Query: 163 ---------KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 +H ++ I S +I +L + FE+G + + F+ ID ++A I+ +GM M Sbjct: 141 AIIELPFNFDKEHDTFKYFIGS-LIYDLYQGFELGLKLYIVFVSIDFLIAVILSGVGMTM 199 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENL 241 L PT IS P K+ F D W++L + L Sbjct: 200 LSPTVISTPVKLAVFYFSDSWTILFKAL 227 >gi|229529208|ref|ZP_04418598.1| surface presentation of antigens protein SpaP [Vibrio cholerae 12129(1)] gi|229332982|gb|EEN98468.1| surface presentation of antigens protein SpaP [Vibrio cholerae 12129(1)] Length = 228 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 52/208 (25%), Positives = 97/208 (46%), Gaps = 32/208 (15%) Query: 54 ILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQP 113 + I T F ++ IV +I++ +G +PP +V+ LA M + P + IE I+P Sbjct: 32 VFFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNGVWPQIQPGIER-IKP 90 Query: 114 LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-----------HSSHRNTDIT 162 + Q + Q + NN K+++++ ++ H+ + +T Sbjct: 91 YFSQQKKQELN-QEI---------NNDLPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLT 140 Query: 163 ---------KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 +H ++ I S +I +L + FE+G + + F+ ID ++A ++ +GM M Sbjct: 141 AIIELPFNFDKEHDTFKYFIGS-LIYDLYQGFELGLKLYIVFVSIDFLIAVVLSGVGMTM 199 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENL 241 L PT IS P K+ F D W++L + L Sbjct: 200 LSPTVISTPVKLAVFYFSDSWTILFKAL 227 >gi|179741815|gb|ACB86727.1| HrcR [uncultured soil bacterium] Length = 119 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 66/110 (60%), Gaps = 6/110 (5%) Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMI 178 T I EPF F+ + + ++ F+ A + + + + D I +L P+F + Sbjct: 11 TAGIAAAREPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLI---VLAPAFTL 67 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 +EL +F+IGFL+ + F+++D+++A ++MAMG+ + PT++++P K++ F Sbjct: 68 TELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 117 >gi|179741532|gb|ACB86718.1| HrcR [uncultured soil bacterium] Length = 132 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 66/110 (60%), Gaps = 6/110 (5%) Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMI 178 T I EPF F+ + + ++ F+ A + + + + D I +L P+F + Sbjct: 24 TAGIAAAREPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLI---VLAPAFTL 80 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 +EL +F+IGFL+ + F+++D+++A ++MAMG+ + PT++++P K++ F Sbjct: 81 TELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 130 >gi|330903542|gb|EGH34114.1| type III secretion system protein YscR [Pseudomonas syringae pv. japonica str. M301072PT] Length = 117 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 48/123 (39%), Positives = 79/123 (64%), Gaps = 12/123 (9%) Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHR------NTDITKNDHIEYRILIPSFMISELRR 183 EP FM TR D + + ++ R +KND + + IP+F++SEL+ Sbjct: 1 EPLQRFM---TRNTDPDVVAHLLENTQRMWPKEMADQASKNDLL---LAIPAFVLSELQA 54 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP K++ FVL+ GWS L+++L Sbjct: 55 GFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTLSLPLKLLLFVLVSGWSRLLDSLFY 114 Query: 244 SFI 246 S++ Sbjct: 115 SYM 117 >gi|179741560|gb|ACB86719.1| HrcR [uncultured soil bacterium] Length = 120 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 66/110 (60%), Gaps = 6/110 (5%) Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMI 178 T I EPF F+ + + ++ F+ A + + + + D I +L P+F + Sbjct: 12 TAGIAAAREPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLI---VLAPAFTL 68 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 +EL +F+IGFL+ + F+++D+++A ++MAMG+ + PT++++P K++ F Sbjct: 69 TELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 118 >gi|313056235|dbj|BAJ39835.1| putative type III secretion system apparatus protein VscR2 [Vibrio mimicus] gi|313056265|dbj|BAJ39850.1| putative type III secretion system apparatus protein VscR2 [Vibrio mimicus] Length = 243 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 55/203 (27%), Positives = 94/203 (46%), Gaps = 22/203 (10%) Query: 54 ILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQP 113 I I T F ++ IV +I++ +G +PP +V+ LA M + P + IE ++P Sbjct: 47 IFFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNAVWPQIQPGIER-VKP 105 Query: 114 LMNNQITETTAIQRVAEPFWVFMRNNTREKDL-----SLFMDMAHSSHRNTDIT------ 162 + Q Q + + F M N L + F ++ + + TD Sbjct: 106 YFSQQ-----EKQELNQDFDNDMPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLSEVIEL 160 Query: 163 ----KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 DH ++ + S +I +L + FE+G + + F+ ID ++A I+ +GM ML PT Sbjct: 161 PFNFDKDHDTFKYFVAS-LIYDLYKGFELGLKLYIIFVSIDFLIAVILSGVGMTMLSPTV 219 Query: 219 ISLPFKVIFFVLIDGWSLLVENL 241 IS P K+ F D W++L + L Sbjct: 220 ISTPVKLAVFYFSDSWTILFKAL 242 >gi|158834391|gb|ABW81990.1| type III secretion system inner membrane component [Candidatus Hamiltonella defensa] gi|158834393|gb|ABW81991.1| type III secretion system inner membrane component [Candidatus Hamiltonella defensa] gi|158834395|gb|ABW81992.1| type III secretion system inner membrane component [Candidatus Hamiltonella defensa] gi|158834397|gb|ABW81993.1| type III secretion system inner membrane component [Candidatus Hamiltonella defensa] gi|158834399|gb|ABW81994.1| type III secretion system inner membrane component [Candidatus Hamiltonella defensa] gi|158834405|gb|ABW81997.1| type III secretion system inner membrane component [Candidatus Hamiltonella defensa] gi|158834407|gb|ABW81998.1| type III secretion system inner membrane component [Candidatus Hamiltonella defensa] gi|158834423|gb|ABW82005.1| type III secretion system inner membrane component [Candidatus Hamiltonella defensa] gi|158834430|gb|ABW82008.1| type III secretion system inner membrane component [Candidatus Hamiltonella defensa] Length = 155 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 85/152 (55%), Gaps = 5/152 (3%) Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 TC+ +F IVF ++R +G+ +P N+ + +AL + +VM P + ++I G + + Sbjct: 5 TCYIKFSIVFVMVRNALGLQQIPSNMTLNGVALLLASFVMMPIV-KNIYEGHKNAQFDVR 63 Query: 120 TETTAIQRVAEPFWVFMRNNTREKD--LSLFMDMAHSSHRNTDITKNDHIEYRI--LIPS 175 ++ I+ V + + D L+ F + A S + D + + I L+P+ Sbjct: 64 NLSSVIEFVENGLDGYRSYLVKYADPELTQFFEKAASDRKEEDFAGAEEEKPSIFALLPA 123 Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 + +SE++ +F+IGF I LPF+++D+++++I++ Sbjct: 124 YALSEIKSAFKIGFYIYLPFVVVDLLISSILL 155 >gi|213027551|ref|ZP_03341998.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 170 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 35/95 (36%), Positives = 66/95 (69%), Gaps = 5/95 (5%) Query: 157 RNTDITKNDHIEYR-----ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 T+ K D E L+P++ +SE++ +F+IGF + LPF+++D++V+++++A+GM Sbjct: 72 EETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALGM 131 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 MM+ P +IS P K++ FV +DGW+LL + L+ ++ Sbjct: 132 MMMSPVTISTPIKLVLFVALDGWTLLSKGLILQYM 166 >gi|179742649|gb|ACB86742.1| HrcR [uncultured soil bacterium] Length = 145 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 79/145 (54%), Gaps = 11/145 (7%) Query: 89 SLALFMTFYVMSP---TLDRSIEMGIQPLMNNQITETTAIQRVA--EPFWVFMRNNTREK 143 +A+ ++ Y+++P IE Q IT+T + +A EP+ F+ + + + Sbjct: 1 GIAIIVSVYILAPIGFAAMHGIETSQQNGQGGNITQTVSAGLIAAGEPYRAFLAAHAQSR 60 Query: 144 DLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200 + F+ A + + + D I +L P+F ++EL +F+IGFL+ + F+++D+ Sbjct: 61 ERQFFLRSAAALWPPQQARALKDTDLI---VLAPAFTMTELTDAFKIGFLLYIGFIVVDL 117 Query: 201 IVATIVMAMGMMMLPPTSISLPFKV 225 ++A ++MAMG+ + PT++++P Sbjct: 118 VIANVLMAMGLNQVQPTNVAIPLSC 142 >gi|262274290|ref|ZP_06052101.1| surface presentation of antigens protein SpaP [Grimontia hollisae CIP 101886] gi|262220853|gb|EEY72167.1| surface presentation of antigens protein SpaP [Grimontia hollisae CIP 101886] Length = 224 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/194 (27%), Positives = 93/194 (47%), Gaps = 15/194 (7%) Query: 61 CFPRFI---IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 CF F+ IV +I++ +G +PP +V+ LA M + P L IE ++P + Sbjct: 32 CFSGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNSIWPQLQPGIER-VEPYFSQ 90 Query: 118 QITETTAIQRVAE-PFWVFMR---NNTREKDLSLFMDMAHSSHRNTDIT------KNDHI 167 Q E Q + P V M ++ E + + + + T++ +H Sbjct: 91 QTQEELNKQIDQDLPKGVTMYTLVSHWAEFFPEVLENAKQKTEKLTEVITLPFNFDQEHD 150 Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227 ++ I S +I +L + FE+G + + F+ ID ++A I+ +GM ML PT IS P K+ Sbjct: 151 TFKYFIGS-LIWDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVISTPVKLAV 209 Query: 228 FVLIDGWSLLVENL 241 F D W++L + L Sbjct: 210 FYFSDSWTILFKAL 223 >gi|158834401|gb|ABW81995.1| type III secretion system inner membrane component [Candidatus Hamiltonella defensa] gi|158834409|gb|ABW81999.1| type III secretion system inner membrane component [Candidatus Hamiltonella defensa] gi|158834411|gb|ABW82000.1| type III secretion system inner membrane component [Candidatus Hamiltonella defensa] gi|158834413|gb|ABW82001.1| type III secretion system inner membrane component [Candidatus Hamiltonella defensa] gi|158834415|gb|ABW82002.1| type III secretion system inner membrane component [Candidatus Hamiltonella defensa] gi|158834418|gb|ABW82003.1| type III secretion system inner membrane component [Candidatus Hamiltonella defensa] gi|158834420|gb|ABW82004.1| type III secretion system inner membrane component [Candidatus Hamiltonella defensa] gi|158834425|gb|ABW82006.1| type III secretion system inner membrane component [Candidatus Hamiltonella defensa] gi|158834427|gb|ABW82007.1| type III secretion system inner membrane component [Candidatus Hamiltonella defensa] Length = 155 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 85/152 (55%), Gaps = 5/152 (3%) Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 TC+ +F IVF ++R +G+ +P N+ + +AL + +VM P + ++I G + + Sbjct: 5 TCYIKFSIVFVMVRNALGLQQIPSNMTLNGVALLLASFVMMPIV-KNIYEGHKNAQFDVR 63 Query: 120 TETTAIQRVAEPFWVFMRNNTREKD--LSLFMDMAHSSHRNTDITKNDHIEYRI--LIPS 175 ++ I+ V + + D L+ F + A S + D + + I L+P+ Sbjct: 64 NLSSVIEFVENGLDGYRSYLVKYADPELTQFFEKAASDRKEEDFVGAEEEKPSIFALLPA 123 Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 + +SE++ +F+IGF I LPF+++D+++++I++ Sbjct: 124 YALSEIKSAFKIGFYIYLPFVVVDLLISSILL 155 >gi|179741369|gb|ACB86713.1| HrcR [uncultured soil bacterium] Length = 120 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 65/110 (59%), Gaps = 6/110 (5%) Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMI 178 T I EPF F+ + + ++ F+ A + + + + D I +L P+F + Sbjct: 12 TAGIAAAREPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLI---VLAPAFTL 68 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 +EL +F+IGFL+ + F+++D+++A ++MAMG+ PT++++P K++ F Sbjct: 69 TELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQGQPTNVAIPLKLLLF 118 >gi|179742161|gb|ACB86735.1| HrcR [uncultured soil bacterium] Length = 112 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 61/101 (60%) Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187 V EP FM NT ++ +D + + + +P+F++SEL+ F+I Sbjct: 10 VIEPLQRFMTRNTDPDVIAHLLDNTQRMWPKDMADQASKSDLLLAVPAFVLSELQAGFQI 69 Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 GFLI +PF++ID+I + +++A+GM ++ P +ISLPFK++ F Sbjct: 70 GFLIYIPFIVIDLIDSNLLLALGMQIVFPMTISLPFKLLLF 110 >gi|153836107|ref|ZP_01988774.1| VcsR2 [Vibrio parahaemolyticus AQ3810] gi|149750861|gb|EDM61606.1| VcsR2 [Vibrio parahaemolyticus AQ3810] Length = 224 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 52/200 (26%), Positives = 95/200 (47%), Gaps = 16/200 (8%) Query: 54 ILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQP 113 + I T F ++ IV +I++ +G +PP +V+ LA M + P + IE ++P Sbjct: 28 VFFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNAVWPQIQPGIER-VKP 86 Query: 114 LMNNQITETTAIQRVAE---PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK------- 163 + Q E + R + P V M + E + H+ + +++ Sbjct: 87 YFSQQ--EKQELNRDVDNDMPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLSEVIELSFN 144 Query: 164 --NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221 +H ++ + S +I +L + FE+G + + F+ ID ++A I+ +GM ML PT IS Sbjct: 145 FDKEHDTFKYFVGS-LIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVIST 203 Query: 222 PFKVIFFVLIDGWSLLVENL 241 P K+ F D W++L + L Sbjct: 204 PVKLAVFYFSDSWTILFKAL 223 >gi|121592127|gb|ABD36816.1| flagellar biosynthesis protein FliP [Pseudomonas fluorescens] Length = 55 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 31/50 (62%), Positives = 42/50 (84%) Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW+L++ L SF Sbjct: 1 LIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLASSF 50 >gi|75906098|gb|ABA29440.1| putative type III secretion system protein [Candidatus Hamiltonella defensa] Length = 97 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 37/75 (49%), Positives = 59/75 (78%) Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230 IL+P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK++ F+L Sbjct: 22 ILMPAFTVSQLIEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMMSPMTISLPFKILIFLL 81 Query: 231 IDGWSLLVENLVKSF 245 + GW +++ L S+ Sbjct: 82 VGGWDMILGQLAGSY 96 >gi|313056253|dbj|BAJ39844.1| putative type III secretion system apparatus protein VscR2 [Vibrio mimicus] Length = 243 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/202 (25%), Positives = 96/202 (47%), Gaps = 16/202 (7%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 + + I T F ++ IV +I++ +G +PP +V+ LA M + P + IE + Sbjct: 45 SAVFFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNAVWPQVQPGIER-V 103 Query: 112 QPLMNNQITETTAIQRVAE---PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK----- 163 +P + Q E + + + P V M + E + H+ + +++ Sbjct: 104 KPYFSQQ--EKQELNQDVDNDMPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLSEVIELP 161 Query: 164 ----NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 +H ++ + S +I +L + FE+G + + F+ ID ++A I+ +GM ML PT I Sbjct: 162 FNFDKEHDTFKYFVGS-LIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVI 220 Query: 220 SLPFKVIFFVLIDGWSLLVENL 241 S P K+ F D W++L + L Sbjct: 221 STPVKLAVFYFSDSWTILFKAL 242 >gi|313056229|dbj|BAJ39832.1| putative type III secretion system apparatus protein VscR2 [Vibrio mimicus] gi|313056247|dbj|BAJ39841.1| putative type III secretion system apparatus protein VscR2 [Vibrio mimicus] gi|313056259|dbj|BAJ39847.1| putative type III secretion system apparatus protein VscR2 [Vibrio mimicus] gi|313056271|dbj|BAJ39853.1| putative type III secretion system apparatus protein VscR2 [Vibrio mimicus] Length = 243 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/200 (25%), Positives = 95/200 (47%), Gaps = 16/200 (8%) Query: 54 ILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQP 113 + I T F ++ IV +I++ +G +PP +V+ LA M + P + IE ++P Sbjct: 47 VFFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNAVWPQIQPGIER-VKP 105 Query: 114 LMNNQITETTAIQRVAE---PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK------- 163 + Q E + + + P V M + E + H+ + +++ Sbjct: 106 YFSQQ--EKQELNQDVDNDMPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLSEVIELPFN 163 Query: 164 --NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221 +H ++ + S +I +L + FE+G + + F+ ID ++A I+ +GM ML PT IS Sbjct: 164 FDKEHDTFKYFVGS-LIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVIST 222 Query: 222 PFKVIFFVLIDGWSLLVENL 241 P K+ F D W++L + L Sbjct: 223 PVKLAVFYFSDSWTILFKAL 242 >gi|28901197|ref|NP_800852.1| type III secretion system protein [Vibrio parahaemolyticus RIMD 2210633] gi|28809710|dbj|BAC62685.1| putative Type III secretion protein Spa24 [Vibrio parahaemolyticus RIMD 2210633] Length = 243 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/200 (25%), Positives = 95/200 (47%), Gaps = 16/200 (8%) Query: 54 ILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQP 113 + I T F ++ IV +I++ +G +PP +V+ LA M + P + IE ++P Sbjct: 47 VFFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNAVWPQIQPGIER-VKP 105 Query: 114 LMNNQITETTAIQRVAE---PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK------- 163 + Q E + + + P V M + E + H+ + +++ Sbjct: 106 YFSQQ--EKQELNQDVDNDMPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLSEVIELPFN 163 Query: 164 --NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221 +H ++ + S +I +L + FE+G + + F+ ID ++A I+ +GM ML PT IS Sbjct: 164 FDKEHDTFKYFVGS-LIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVIST 222 Query: 222 PFKVIFFVLIDGWSLLVENL 241 P K+ F D W++L + L Sbjct: 223 PVKLAVFYFSDSWTILFKAL 242 >gi|260362756|ref|ZP_05775625.1| type III secretion system protein [Vibrio parahaemolyticus K5030] gi|260880044|ref|ZP_05892399.1| type III secretion system protein [Vibrio parahaemolyticus AN-5034] gi|260895161|ref|ZP_05903657.1| type III secretion system protein [Vibrio parahaemolyticus Peru-466] gi|308085658|gb|EFO35353.1| type III secretion system protein [Vibrio parahaemolyticus Peru-466] gi|308092712|gb|EFO42407.1| type III secretion system protein [Vibrio parahaemolyticus AN-5034] gi|308111991|gb|EFO49531.1| type III secretion system protein [Vibrio parahaemolyticus K5030] Length = 224 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/200 (25%), Positives = 95/200 (47%), Gaps = 16/200 (8%) Query: 54 ILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQP 113 + I T F ++ IV +I++ +G +PP +V+ LA M + P + IE ++P Sbjct: 28 VFFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNAVWPQIQPGIER-VKP 86 Query: 114 LMNNQITETTAIQRVAE---PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK------- 163 + Q E + + + P V M + E + H+ + +++ Sbjct: 87 YFSQQ--EKQELNQDVDNDMPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLSEVIELPFN 144 Query: 164 --NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221 +H ++ + S +I +L + FE+G + + F+ ID ++A I+ +GM ML PT IS Sbjct: 145 FDKEHDTFKYFVGS-LIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVIST 203 Query: 222 PFKVIFFVLIDGWSLLVENL 241 P K+ F D W++L + L Sbjct: 204 PVKLAVFYFSDSWTILFKAL 223 >gi|313056277|dbj|BAJ39856.1| putative type III secretion system apparatus protein VscR2 [Vibrio mimicus] Length = 243 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/200 (25%), Positives = 95/200 (47%), Gaps = 16/200 (8%) Query: 54 ILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQP 113 + I T F ++ IV +I++ +G +PP +V+ LA M + P + IE ++P Sbjct: 47 VFFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNAVWPQIQPGIER-VKP 105 Query: 114 LMNNQITETTAIQRVAE---PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK------- 163 + Q E + + + P V M + E + H+ + +++ Sbjct: 106 YFSQQ--EKQELNQDIDNDMPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLSEVIELPFN 163 Query: 164 --NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221 +H ++ + S +I +L + FE+G + + F+ ID ++A I+ +GM ML PT IS Sbjct: 164 FDKEHDTFKYFVGS-LIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVIST 222 Query: 222 PFKVIFFVLIDGWSLLVENL 241 P K+ F D W++L + L Sbjct: 223 PVKLAVFYFSDSWTILFKAL 242 >gi|194350768|gb|ACF53813.1| HrcR [Pectobacterium atrosepticum SCRI1043] Length = 121 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 64/103 (62%), Gaps = 6/103 (5%) Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYR---ILIPSFMIS 179 T++ P FM +NT D + + + +S R +D + ++IP+F++S Sbjct: 21 TSVTNGVAPLQKFMTHNT---DPDILIHLQENSVRMWPKEMSDSVNKDNLLLVIPAFVLS 77 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222 EL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP Sbjct: 78 ELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLP 120 >gi|194350762|gb|ACF53810.1| HrcR [Pectobacterium carotovorum subsp. brasiliensis] Length = 121 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 68/107 (63%), Gaps = 12/107 (11%) Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSS------HRNTDITKNDHIEYRILIPSF 176 T++ P FM +NT D + + + +S + +++K++ + ++IP+F Sbjct: 21 TSVTNGVAPLQKFMTHNT---DPDILIHLQENSVQMWPKEMSENVSKDNLL---LVIPAF 74 Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 ++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP Sbjct: 75 VLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPL 121 >gi|145207712|emb|CAJ90702.1| putative RhcR protein [Bradyrhizobium japonicum] Length = 57 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/52 (61%), Positives = 40/52 (76%) Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 PF+ ID+IV TI+MAMGM M+ PT IS+PFK+ FV IDGWS L+ LV S+ Sbjct: 1 PFITIDLIVTTILMAMGMSMVSPTVISVPFKLFLFVTIDGWSRLMHGLVLSY 52 >gi|194350731|gb|ACF53796.1| HrcR [Brenneria lupinicola] Length = 125 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 72/126 (57%), Gaps = 7/126 (5%) Query: 105 RSIEMGIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163 R +PL IT A + EP FM +R D + + +S + + Sbjct: 3 RCFRTQEKPLDMTDITSLQASVTYGQEPLQTFM---SRNVDPDILTHLHENSLQMWPASL 59 Query: 164 NDHIEYR---ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220 ++ + + ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++S Sbjct: 60 SEKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLS 119 Query: 221 LPFKVI 226 LP ++ Sbjct: 120 LPLPLL 125 >gi|194350741|gb|ACF53801.1| HrcR [Erwinia tracheiphila] Length = 128 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/114 (38%), Positives = 72/114 (63%), Gaps = 11/114 (9%) Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN-----TDITKNDHIEYRILIPS 175 ETTA + EP FM NT D + + +S R ++ D+I ++IP+ Sbjct: 21 ETTATHGI-EPLQKFMSRNT---DPDILTHLHENSIRMWPAAMSEKATTDNI--LLVIPA 74 Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229 F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ PT++ LP K++ FV Sbjct: 75 FVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPTTLWLPLKLLLFV 128 >gi|194350739|gb|ACF53800.1| HrcR [Erwinia tracheiphila] gi|194350743|gb|ACF53802.1| HrcR [Brenneria quercina] Length = 128 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/114 (39%), Positives = 73/114 (64%), Gaps = 11/114 (9%) Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN-----TDITKNDHIEYRILIPS 175 ETTA + EP FM NT D + + +S R ++ D+I ++IP+ Sbjct: 21 ETTATHGI-EPLQKFMSRNT---DPDILTHLHENSIRMWPAAMSEKATTDNI--LLVIPA 74 Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229 F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ PT++SLP K++ FV Sbjct: 75 FVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPTTLSLPLKLLLFV 128 >gi|238799426|ref|ZP_04642855.1| Flagellar biosynthetic protein FliP [Yersinia mollaretii ATCC 43969] gi|238716730|gb|EEQ08617.1| Flagellar biosynthetic protein FliP [Yersinia mollaretii ATCC 43969] Length = 46 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/44 (61%), Positives = 39/44 (88%) Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +A+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 1 MASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 44 >gi|194350745|gb|ACF53803.1| HrcR [Brenneria quercina] gi|194350747|gb|ACF53804.1| HrcR [Brenneria nigrifluens] Length = 128 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/114 (39%), Positives = 73/114 (64%), Gaps = 11/114 (9%) Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN-----TDITKNDHIEYRILIPS 175 ETTA + EP FM NT D + + +S R ++ D+I ++IP+ Sbjct: 21 ETTATHGI-EPLQKFMSRNT---DPDILTHLHENSIRMWPPAMSEKATTDNI--LLVIPA 74 Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229 F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ PT++SLP K++ FV Sbjct: 75 FVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPTTLSLPLKLLLFV 128 >gi|119391678|emb|CAJ46463.1| RhcR protein [Bradyrhizobium japonicum] gi|145207704|emb|CAJ90696.1| putative RhcR protein [Bradyrhizobium sp. MSDJ 5327] gi|145207708|emb|CAJ90699.1| putative RhcR protein [Bradyrhizobium japonicum] Length = 57 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/52 (59%), Positives = 40/52 (76%) Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 P ++ID+IV TI+MAMGM M+ PT IS+PFK+ FV IDGWS L+ LV S+ Sbjct: 1 PLIVIDLIVTTILMAMGMSMVSPTVISVPFKLFLFVTIDGWSRLMHGLVLSY 52 >gi|308126175|ref|ZP_05908255.2| FliP family protein [Vibrio parahaemolyticus AQ4037] gi|308107367|gb|EFO44907.1| FliP family protein [Vibrio parahaemolyticus AQ4037] Length = 278 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 52/204 (25%), Positives = 98/204 (48%), Gaps = 30/204 (14%) Query: 61 CFPRFI---IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 CF F+ IV +I++ +G +PP +V+ LA M + P + IE ++P ++ Sbjct: 81 CFSGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNSVWPEVKPGIER-VKPYFSS 139 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFM----------DMAHSSHRNT-------D 160 Q ++ A + ++ K++++F ++ ++ T D Sbjct: 140 QHRLEDSLDTSAS-----VSSDELPKNVTMFTLVSNLFEFFPELLKTAEDKTNKLTSLID 194 Query: 161 ITKN---DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 I N ++ ++ I S +I +L + FE+G + + F+ ID ++A I+ +GM ML PT Sbjct: 195 IPLNFDEENQTFKFFIGS-LIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPT 253 Query: 218 SISLPFKVIFFVLIDGWSLLVENL 241 IS P K+ F D W++L + L Sbjct: 254 VISTPVKLAVFYFSDSWTILFKAL 277 >gi|221271465|dbj|BAH15017.1| putative type III secretion system apparatus protein VscR2 [Vibrio parahaemolyticus] Length = 229 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 52/204 (25%), Positives = 97/204 (47%), Gaps = 30/204 (14%) Query: 61 CFPRFI---IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 CF F+ IV +I++ +G +PP +V+ LA M + P + IE ++P ++ Sbjct: 32 CFSGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNSVWPEVKPGIER-VKPYFSS 90 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFM----------DMAHSSHRNT-------D 160 Q ++ A + + K++++F ++ ++ T D Sbjct: 91 QYRLEDSLDPSAS-----VSSEELPKNVTMFTLVSNLFEFFPELLKTAEDKTNKLTSLID 145 Query: 161 ITKN---DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 I N ++ ++ I S +I +L + FE+G + + F+ ID ++A I+ +GM ML PT Sbjct: 146 IPLNFDEENQTFKFFIGS-LIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPT 204 Query: 218 SISLPFKVIFFVLIDGWSLLVENL 241 IS P K+ F D W++L + L Sbjct: 205 VISTPVKLAVFYFSDSWTILFKAL 228 >gi|328469627|gb|EGF40563.1| type III secretion system protein YscR [Vibrio parahaemolyticus 10329] Length = 229 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 51/204 (25%), Positives = 94/204 (46%), Gaps = 30/204 (14%) Query: 61 CFPRFI---IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 CF F+ IV +I++ +G +PP +V+ LA M + P + IE ++P ++ Sbjct: 32 CFSGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNSVWPEVKPGIER-VKPYFSS 90 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFM-----------------DMAHSSHRNTD 160 Q +++ A + + K++++F D + D Sbjct: 91 QHRLEDSLEPSAS-----VSSEELPKNVTMFTLVSNLFEFFPEVLKIAEDKTNKLTSEID 145 Query: 161 IT---KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 I ++ ++ I S +I +L + FE+G + + F+ ID ++A I+ +GM ML PT Sbjct: 146 IPLHFDEENQTFKFFIGS-LIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPT 204 Query: 218 SISLPFKVIFFVLIDGWSLLVENL 241 IS P K+ F D W++L + L Sbjct: 205 VISTPVKLAVFYFSDSWTILFKAL 228 >gi|323163025|gb|EFZ48858.1| harpin secretion protein hrpW [Escherichia coli E128010] Length = 149 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 67/125 (53%), Gaps = 8/125 (6%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP-TL 103 +F +LS+ PI +++ T F + IV IL+ +G+ VPPN+ + S++L +T ++MSP L Sbjct: 13 VFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIIL 72 Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 + + +P+ T++ Q+V E P+ F+ NT ++++ F A N Sbjct: 73 QINDNISQEPI---NYTDSDFFQKVDEKILSPYRGFLEKNTEKENVEFFERAAQKKLGNE 129 Query: 160 DITKN 164 I K Sbjct: 130 TILKK 134 >gi|119391682|emb|CAJ46466.1| RhcR protein [Bradyrhizobium liaoningense] gi|145207716|emb|CAJ90705.1| putative RhcR protein [Bradyrhizobium japonicum] Length = 57 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 31/52 (59%), Positives = 39/52 (75%) Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 P + ID+IV TI+MAMGM M+ PT IS+PFK+ FV IDGWS L+ LV S+ Sbjct: 1 PLITIDLIVTTILMAMGMSMVSPTVISVPFKLFLFVTIDGWSRLMHGLVLSY 52 >gi|153212098|ref|ZP_01947915.1| VcsR2 [Vibrio cholerae 1587] gi|153827997|ref|ZP_01980664.1| VcsR2 [Vibrio cholerae 623-39] gi|124116894|gb|EAY35714.1| VcsR2 [Vibrio cholerae 1587] gi|148876578|gb|EDL74713.1| VcsR2 [Vibrio cholerae 623-39] Length = 229 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 52/199 (26%), Positives = 96/199 (48%), Gaps = 20/199 (10%) Query: 61 CFPRFI---IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 CF F+ IV +I++ +G +PP +V+ LA M + P + +E ++P ++ Sbjct: 32 CFSGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNSVWPEVKPGLER-VKPYFSS 90 Query: 118 Q------ITETTAIQRVAEPFWVFM---RNNTREKDLSLFMDMAHSSHRNTDITK----- 163 Q I + +I P V M +N E L + +++ T + + Sbjct: 91 QHRLEDSIDTSASISSEELPKNVTMFTLVSNLFEFFPELLKNAEDKTNKLTSLIEIPLSF 150 Query: 164 -NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222 ++ ++ I S +I +L + FE+G + + F+ ID ++A I+ +G+ ML PT IS P Sbjct: 151 DEENQTFKFFIGS-LIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGITMLSPTVISTP 209 Query: 223 FKVIFFVLIDGWSLLVENL 241 K+ F D W++L + L Sbjct: 210 VKLAVFYFSDSWTILFKAL 228 >gi|19880031|gb|AAM00229.1|AF358871_1 SctR [Burkholderia pseudomallei] Length = 133 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 75/129 (58%), Gaps = 2/129 (1%) Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTRE 142 +V+ +A+ ++ YVM+P ++ + + + +Q ++ A+ EPF F+ +T E Sbjct: 1 MVLNGIAILVSLYVMAPIGMQAAKALDEQQLASQSSQAIIQALGSAREPFRSFLEKHTPE 60 Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202 ++ F+ A + + + + +L P+F +SEL +F+IGFL+ + F+I+D+++ Sbjct: 61 REKRFFIRSASVIWPKEEASLLNERDLIVLAPAFALSELTDAFKIGFLLYIVFIIVDLVI 120 Query: 203 ATIVMAMGM 211 A +++A+G+ Sbjct: 121 ANVLLALGL 129 >gi|253990947|ref|YP_003042303.1| type III secretion system protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782397|emb|CAQ85561.1| Putative Type III secretion flagellar biosynthesis inner membrane protein [Photorhabdus asymbiotica] Length = 236 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/211 (24%), Positives = 101/211 (47%), Gaps = 23/211 (10%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 + + I + F ++ IV +IL+ MG +PP++V+ LA + + L+ +E I Sbjct: 26 SAVFFICFSGFVKYNIVLNILKNAMGTQQIPPSIVVNLLAALLALNSIWGDLEPGLER-I 84 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF-----MD------MAHSSHRNTD 160 +P + ++ I + ++ D++++ +D +A + ++ + Sbjct: 85 KPYFTDTYDKSIPIIDPISGLGLSNNELSKSGDVTMYHLVSRIDEYFPEIIARAERKSLE 144 Query: 161 ITK--------NDHIEYRILIP--SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 + K ND +L P +I +L + FE+G + + F+ ID ++A ++ +G Sbjct: 145 LEKLFTLPIAFNDG-SGSVLKPLLGGLILDLYKGFELGIKLYMIFVSIDFLIAVVLSGVG 203 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 M ML PT IS+P K+ F DGW++L L Sbjct: 204 MSMLSPTVISIPIKLAVFYFSDGWTILFNTL 234 >gi|304412098|ref|ZP_07393708.1| type III secretion system inner membrane P protein [Shewanella baltica OS183] gi|307305993|ref|ZP_07585739.1| type III secretion system inner membrane P protein [Shewanella baltica BA175] gi|304349648|gb|EFM14056.1| type III secretion system inner membrane P protein [Shewanella baltica OS183] gi|306911486|gb|EFN41912.1| type III secretion system inner membrane P protein [Shewanella baltica BA175] Length = 231 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/206 (23%), Positives = 96/206 (46%), Gaps = 21/206 (10%) Query: 54 ILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEM---- 109 + I + + ++ IV +I++ +G +PP +V+ LA M + P + +E Sbjct: 28 VFFICFSGYVKYNIVLNIIKNAVGTQQIPPTIVVNLLAALMALNSIWPDIKPGLERVKPY 87 Query: 110 ---GIQPLMNNQITETTAIQRVAEPFWV---FMRNNTREKDLSLFMDMAHSSHRNTDI-- 161 I +N + +++++ +P V ++ +N E L ++ T+I Sbjct: 88 FIEQINGEINPDVLQSSSLFEDKKPEQVTMYYLVSNVFEFFPELLARAQRKTNELTEIID 147 Query: 162 ------TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215 + +D ++Y + +I +L + FE G + + F+ ID ++A I+ +GM ML Sbjct: 148 IPLNFDSGSDTLKYFL---GNLILDLYQGFEFGLKLYMIFVSIDFLIAVILSGVGMTMLS 204 Query: 216 PTSISLPFKVIFFVLIDGWSLLVENL 241 PT IS P K+ F D W++L L Sbjct: 205 PTVISTPVKLAVFYFSDSWTILFRAL 230 >gi|313056241|dbj|BAJ39838.1| putative type III secretion system apparatus protein VscR2 [Vibrio mimicus] Length = 229 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/204 (23%), Positives = 95/204 (46%), Gaps = 30/204 (14%) Query: 61 CFPRFI---IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 CF F+ IV +I++ +G +PP +V+ LA M + P + +E ++P ++ Sbjct: 32 CFSGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNSVWPEVKPGLER-VKPYFSS 90 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH-----------SSHRNTDITK--- 163 Q ++ A + + K++++F +++ + + +T Sbjct: 91 QHRLEDSLDTSAS-----VSSEELPKNVTMFTLVSNLFDFFPELLKTAEDKTNKLTSLIE 145 Query: 164 ------NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + ++ I S +I +L + FE+G + + F+ ID ++A I+ +GM ML PT Sbjct: 146 IPLNFDEEDQTFKFFIGS-LIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPT 204 Query: 218 SISLPFKVIFFVLIDGWSLLVENL 241 IS P K+ F D W++L + L Sbjct: 205 VISTPVKLAVFYFSDSWTILFKAL 228 >gi|194350749|gb|ACF53805.1| HrcR [Brenneria nigrifluens] Length = 128 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 67/117 (57%), Gaps = 9/117 (7%) Query: 105 RSIEMGIQPLMNNQIT--ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT 162 R PL N I+ + + Q +A P FM NT D + + +S R + Sbjct: 3 RCFRTQENPLNMNDISVLQESVTQGLA-PLQTFMSRNT---DPDILTHLQENSLRMWPPS 58 Query: 163 KNDHIEYR---ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 ++ + + ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P Sbjct: 59 LSEKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAP 115 >gi|323267197|gb|EGA50682.1| type III secretion system protein YscR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] Length = 109 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 12/94 (12%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ GI +LSI P++++M T F + +VFSILR +G+ VPPN+ + LAL ++ ++M Sbjct: 8 LQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIM 67 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133 PTL E +Q PFW Sbjct: 68 GPTLLAVKE------------RWHPVQVAGAPFW 89 >gi|179741848|gb|ACB86728.1| HrcR [uncultured soil bacterium] Length = 93 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 45/57 (78%) Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227 +L P+F ++EL +F+IGFL+ + F+++D+++A ++MAMG+ + PT++++P K+ F Sbjct: 34 VLAPAFTLTELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLPF 90 >gi|194350725|gb|ACF53793.1| HrcR [Erwinia mallotivora] Length = 128 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 64/105 (60%), Gaps = 10/105 (9%) Query: 119 ITETTAIQRVA----EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYR---I 171 +T+ T++Q EP FM +R D + + +S R + ++ + + + Sbjct: 14 MTDITSLQASVTYGLEPLQTFM---SRNVDPDILTHLHENSLRMWPASLSEKVNTQNLLL 70 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 +IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P Sbjct: 71 VIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAP 115 >gi|321399649|emb|CBJ44652.1| putative type III secretion system protein HcrR [Pseudomonas sp. MTR-48-522] Length = 55 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 45/55 (81%) Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 ++PF++ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GW+ L+++L S++ Sbjct: 1 VIPFIVIDLIVSNLLLALGMQMVAPMTISLPLKLLIFVLVQGWTQLLDSLFYSYL 55 >gi|51587318|emb|CAE53693.1| putative HrcR [Pseudomonas fluorescens] gi|321399617|emb|CBJ44628.1| putative type III secretion system protein HcrR [Pseudomonas sp. MTE-48-102] gi|321399621|emb|CBJ44631.1| putative type III secretion system protein HcrR [Pseudomonas sp. MTE-48-104] gi|321399641|emb|CBJ44646.1| putative type III secretion system protein HcrR [Pseudomonas sp. MTR-25-521] gi|321399645|emb|CBJ44649.1| putative type III secretion system protein HcrR [Pseudomonas sp. MTR-48-521] gi|321399657|emb|CBJ44658.1| putative type III secretion system protein HcrR [Pseudomonas sp. MTR-J5-521] gi|321399661|emb|CBJ44661.1| putative type III secretion system protein HcrR [Pseudomonas sp. MTR-J5-522] gi|321399665|emb|CBJ44664.1| putative type III secretion system protein HcrR [Pseudomonas sp. MTR-J5-621] gi|321399669|emb|CBJ44667.1| putative type III secretion system protein HcrR [Pseudomonas sp. MTR-J5-622] gi|321399673|emb|CBJ44670.1| putative type III secretion system protein HcrR [Pseudomonas sp. MTR-J5-623] Length = 53 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 43/53 (81%) Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 PF++ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GW+ L+++L S++ Sbjct: 1 PFIVIDLIVSNLLLALGMQMVAPMTISLPLKLLIFVLVQGWTQLLDSLFYSYL 53 >gi|194350727|gb|ACF53794.1| HrcR [Erwinia rhapontici] gi|194350729|gb|ACF53795.1| HrcR [Erwinia rhapontici] gi|194350735|gb|ACF53798.1| HrcR [Erwinia psidii] gi|194350771|gb|ACF53814.1| HrcR [Erwinia chrysanthemi] Length = 128 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 64/105 (60%), Gaps = 10/105 (9%) Query: 119 ITETTAIQRVA----EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYR---I 171 +T+ T++Q EP FM +R D + + +S + + ++ + + + Sbjct: 14 MTDITSLQASVTYGLEPLQTFM---SRNVDPDILTHLHENSLQMWPASLSEKVNTQNLLL 70 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 +IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P Sbjct: 71 VIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAP 115 >gi|194350723|gb|ACF53792.1| HrcR [Erwinia mallotivora] Length = 127 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 64/107 (59%), Gaps = 10/107 (9%) Query: 119 ITETTAIQRVA----EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYR---I 171 +T+ T++Q EP FM +R D + + +S R + ++ + + + Sbjct: 14 MTDITSLQASVTYGLEPLQTFM---SRNVDPDILTHLHENSLRMWPASLSEKVNTQNLLL 70 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 +IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A GM M+ P + Sbjct: 71 VIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVMLARGMQMVAPQT 117 >gi|194350733|gb|ACF53797.1| HrcR [Brenneria lupinicola] Length = 128 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 64/105 (60%), Gaps = 10/105 (9%) Query: 119 ITETTAIQRVA----EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYR---I 171 +T+ T++Q EP FM +R D + + +S + + ++ + + + Sbjct: 14 MTDITSLQASVTYGLEPLQTFM---SRNVDPDILTHLHENSLQMWPASLSEKVNTQNLLL 70 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 +IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P Sbjct: 71 VIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAP 115 >gi|51587274|emb|CAE53660.1| putative HrcR [Pseudomonas fluorescens bv. V] gi|51587278|emb|CAE53663.1| putative HrcR [Pseudomonas fluorescens bv. V] gi|51587286|emb|CAE53669.1| putative HrcR protein [Pseudomonas fluorescens bv. V] gi|51587290|emb|CAE53672.1| putative HrcR protein [Pseudomonas fluorescens] gi|51587314|emb|CAE53690.1| putative HrcR [Pseudomonas fluorescens bv. V] Length = 53 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 43/53 (81%) Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 PF++ID+IV+ +++A+GM M+ P +ISLP K++ FV++ GWS L+++L S++ Sbjct: 1 PFIVIDLIVSNLLLALGMQMVSPMTISLPLKLLLFVMVSGWSRLLDSLFLSYL 53 >gi|213615826|ref|ZP_03371652.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 73 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 43/64 (67%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ GI +LSI P++++M T F + +VFSILR +G+ VPPN+ + AL ++ ++M Sbjct: 8 LQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIM 67 Query: 100 SPTL 103 PTL Sbjct: 68 GPTL 71 >gi|179741334|gb|ACB86712.1| HrcR [uncultured soil bacterium] Length = 72 Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 46/58 (79%) Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 +L P+F ++EL +F+IGFL+ + F+++D+++A ++MAMG+ + PT++++P K++ F Sbjct: 13 VLAPAFTLTELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 70 >gi|194350751|gb|ACF53806.1| HrcR [Brenneria salicis] Length = 128 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 64/107 (59%), Gaps = 10/107 (9%) Query: 119 ITETTAIQRVA----EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYR---I 171 +T+ T++Q EP FM +R D + + +S + + ++ + + + Sbjct: 14 MTDITSLQASVTYGLEPLQTFM---SRNVDPDILTHLHENSLQMWPASLSEKVNTQNLLL 70 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 +IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM + P + Sbjct: 71 VIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQRVAPXT 117 >gi|51587262|emb|CAE53651.1| putative HrcR protein [Pseudomonas blatchfordae] Length = 53 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 42/53 (79%) Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 PF++ID+IV+ +++A+GM M+ P +ISLP K++ FV++ GWS L+ +L S++ Sbjct: 1 PFIVIDLIVSNLLLALGMQMVSPMTISLPPKLLLFVMVSGWSRLLVSLFLSYL 53 >gi|51587294|emb|CAE53675.1| putative HrcR protein [Pseudomonas fluorescens bv. I] gi|321399637|emb|CBJ44643.1| putative type III secretion system protein HcrR [Pseudomonas sp. MTR-25-321] Length = 50 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 40/50 (80%) Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GW+ L+++L S++ Sbjct: 1 VIDLIVSNLLLALGMQMVAPMTISLPLKLLIFVLVQGWTQLLDSLFYSYL 50 >gi|51587310|emb|CAE53687.1| putative HrcR [Pseudomonas fluorescens bv. III] gi|321399613|emb|CBJ44625.1| putative type III secretion system protein HrcR [Pseudomonas sp. MTE-25-201] gi|321399633|emb|CBJ44640.1| putative type III secretion system protein HcrR [Pseudomonas sp. MTE-J5-708] Length = 51 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 41/51 (80%) Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 ++ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GW+ L+++L S++ Sbjct: 1 IVIDLIVSNLLLALGMQMVAPMTISLPLKLLIFVLVQGWTQLLDSLFYSYL 51 >gi|51587306|emb|CAE53684.1| putative HrcR [Pseudomonas fluorescens bv. II] Length = 49 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 39/49 (79%) Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GW+ L+++L S++ Sbjct: 1 IDLIVSNLLLALGMQMVAPMTISLPLKLLIFVLVQGWTQLLDSLFYSYL 49 >gi|51587282|emb|CAE53666.1| putative HrcR protein [Pseudomonas fluorescens bv. I] Length = 49 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 39/49 (79%) Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 ID+IV+ +++A+GM M+ P +ISLP K++ FV++ GWS L+++L S++ Sbjct: 1 IDLIVSNLLLALGMQMVSPMTISLPLKLLLFVMVSGWSRLLDSLFLSYL 49 >gi|51587298|emb|CAE53678.1| putative HrcR protein [Pseudomonas fluorescens bv. V] Length = 48 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 38/48 (79%) Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 D+IV+ +++A+GM M+ P +ISLP K++ FV++ GWS L+++L S++ Sbjct: 1 DLIVSNLLLALGMQMVSPMTISLPLKLLLFVMVSGWSRLLDSLFLSYL 48 >gi|323178894|gb|EFZ64470.1| harpin secretion protein hrpW [Escherichia coli 1180] Length = 118 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 58/103 (56%), Gaps = 8/103 (7%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP-TL 103 +F +LS+ PI +++ T F + IV IL+ +G+ VPPN+ + S++L +T ++MSP L Sbjct: 17 VFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIIL 76 Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAE----PFWVFMRNNTRE 142 + + +P+ T++ Q+V E P+ F+ R+ Sbjct: 77 QINDNISQEPI---NYTDSDFFQKVDEKILSPYRGFLEKIQRK 116 >gi|289805086|ref|ZP_06535715.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 62 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 38/57 (66%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100 GI +LSI P++++M T F + +VFSILR +G+ VPPN+ + AL ++ ++M Sbjct: 3 GILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMG 59 >gi|291084579|ref|ZP_06539401.2| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 60 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 37/60 (61%) Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130 +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A+ + A+ Sbjct: 1 MLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQKISMQEALDKGAQ 60 >gi|284810343|gb|ADB95953.1| putative HrcR [Pseudomonas cichorii] gi|284810347|gb|ADB95956.1| putative HrcR [Pseudomonas cichorii] gi|284810351|gb|ADB95959.1| putative HrcR [Pseudomonas cichorii] gi|284810355|gb|ADB95962.1| putative HrcR [Pseudomonas cichorii] gi|284810359|gb|ADB95965.1| putative HrcR [Pseudomonas cichorii] gi|284810363|gb|ADB95968.1| putative HrcR [Pseudomonas cichorii] gi|284810367|gb|ADB95971.1| putative HrcR [Pseudomonas cichorii] gi|284810371|gb|ADB95974.1| putative HrcR [Pseudomonas cichorii] gi|284810375|gb|ADB95977.1| putative HrcR [Pseudomonas cichorii] gi|284810379|gb|ADB95980.1| putative HrcR [Pseudomonas cichorii] gi|284810403|gb|ADB95998.1| putative HrcR [Pseudomonas cichorii] Length = 44 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 34/44 (77%) Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 + I++A+GM M+ P +ISLP K++ FVL+DGW+ L++ L S++ Sbjct: 1 SNILLALGMQMVAPMTISLPLKILLFVLVDGWTRLLDGLFYSYM 44 >gi|51587254|emb|CAE53645.1| putative HrcR protein [Pseudomonas salomonii] Length = 50 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 39/50 (78%) Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +ID+IV+ +++A+GM M+ P +ISLP K++ V++ GWS L+++L S++ Sbjct: 1 VIDLIVSNLLLALGMQMVSPMTISLPLKLLLSVMVSGWSRLLDSLFFSYL 50 >gi|255023681|ref|ZP_05295667.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL J1-208] Length = 118 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 41/62 (66%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V F + T+LS++ +++M T F IIV + R G+G ++PPN V++ LALF++ ++M Sbjct: 52 VALFVLVTVLSLSASIVLMFTHFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMM 111 Query: 100 SP 101 P Sbjct: 112 QP 113 >gi|226446413|gb|ACO58572.1| HrcR [Pseudomonas fluorescens] Length = 46 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 36/46 (78%) Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 IV+ +++A+GM M+ P +ISLP K++ FV++ GWS L+++L S++ Sbjct: 1 IVSNLLLALGMQMVSPMTISLPLKLLLFVMVSGWSRLLDSLFLSYL 46 >gi|190694824|gb|ACE88959.1| HrcR [Pseudomonas fluorescens] Length = 47 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 37/47 (78%) Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +IV+ +++A+GM M+ P +ISLP K++ FV++ GWS L+++L S++ Sbjct: 1 LIVSNLLLALGMQMVSPMTISLPLKLLLFVMVSGWSRLLDSLFFSYL 47 >gi|331005461|ref|ZP_08328840.1| hypothetical protein IMCC1989_1974 [gamma proteobacterium IMCC1989] gi|330420737|gb|EGG95024.1| hypothetical protein IMCC1989_1974 [gamma proteobacterium IMCC1989] Length = 39 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/37 (54%), Positives = 31/37 (83%) Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MGM+M+PP ISLP K++ F+LIDGW ++ ++L++SF Sbjct: 1 MGMLMVPPMMISLPIKILMFILIDGWFIVTKSLMESF 37 >gi|284810387|gb|ADB95986.1| putative HrcR [Pseudomonas cichorii] gi|284810391|gb|ADB95989.1| putative HrcR [Pseudomonas cichorii] gi|284810399|gb|ADB95995.1| putative HrcR [Pseudomonas cichorii] Length = 40 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 31/40 (77%) Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +A+GM M+ P +ISLP K++ FVL+DGW+ L++ L S++ Sbjct: 1 LALGMQMVAPMTISLPLKILLFVLVDGWTRLLDGLFYSYM 40 >gi|226326425|ref|ZP_03801943.1| hypothetical protein PROPEN_00273 [Proteus penneri ATCC 35198] gi|225205208|gb|EEG87562.1| hypothetical protein PROPEN_00273 [Proteus penneri ATCC 35198] Length = 121 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 36/59 (61%) Query: 50 SIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108 ++AP ++ TC+ +F IV + R +G+ VP N+V+ ++AL M +VM+P S + Sbjct: 15 TLAPFIIAAGTCYLKFSIVLVMTRNALGVQQVPSNMVLNAVALMMALFVMTPIAKNSYQ 73 >gi|15646198|ref|NP_207478.1| flagellar biosynthesis protein [Helicobacter pylori 26695] gi|7464067|pir||D64605 flagellar biosynthesis protein - Helicobacter pylori (strain 26695) Length = 105 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 50/94 (53%), Gaps = 7/94 (7%) Query: 6 FFALFLVTP---ELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 F L L+ P L+ A S+L V +N P D + + T+L +AP L++++ Sbjct: 4 FIFLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVM 63 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 T F R I+VFS LRT +G PP+ SLALF Sbjct: 64 TSFTRLIVVFSFLRTALGTQQTPPH-SNFSLALF 96 >gi|270488968|ref|ZP_06206042.1| flagellar biosynthesis protein FliP domain protein [Yersinia pestis KIM D27] gi|270337472|gb|EFA48249.1| flagellar biosynthesis protein FliP domain protein [Yersinia pestis KIM D27] Length = 41 Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 23/41 (56%), Positives = 35/41 (85%) Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 ++AMGMMM+ P ++SLPFK++ FVL+DGWSL++ LV S++ Sbjct: 1 MLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL 41 >gi|51587258|emb|CAE53648.1| putative HrcR protein [Pseudomonas gingeri] Length = 53 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 25/53 (47%), Positives = 43/53 (81%) Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 PF++ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GWS L+++L S++ Sbjct: 1 PFIVIDLIVSNLLLALGMQMVSPMTISLPLKLLLFVLVQGWSRLLDSLFYSYL 53 >gi|51587266|emb|CAE53654.1| putative HrcR [Pseudomonas fluorescens bv. I] gi|51587322|emb|CAE53696.1| putative HrcR [Pseudomonas sp. CFBP 11402] Length = 53 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 25/53 (47%), Positives = 43/53 (81%) Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 PF++ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GWS L+++L S++ Sbjct: 1 PFIVIDLIVSNLLLALGMQMVSPMTISLPLKLLLFVLVSGWSRLLDSLFLSYL 53 >gi|321399625|emb|CBJ44634.1| putative type III secretion system protein HcrR [Pseudomonas sp. MTE-48-204] gi|321399629|emb|CBJ44637.1| putative type III secretion system protein HcrR [Pseudomonas sp. MTE-48-205] Length = 53 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 43/53 (81%) Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 PF++ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GW+ L+++L S++ Sbjct: 1 PFIVIDLIVSNLLLALGMQMVSPMTISLPLKLLLFVLVQGWTRLLDSLFYSYL 53 >gi|213419313|ref|ZP_03352379.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 100 Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 32/49 (65%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 P ++ TCF +F IVF ++R +G+ +P N+ + S+AL ++ +VM P Sbjct: 18 PFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNSVALLLSMFVMWP 66 >gi|179741285|gb|ACB86710.1| HrcR [uncultured soil bacterium] Length = 88 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 6/77 (7%) Query: 130 EPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 EPF F+ + + ++ F+ A + + + + D I +L P+F ++EL +F+ Sbjct: 15 EPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLI---VLAPAFTLTELTDAFK 71 Query: 187 IGFLIILPFLIIDMIVA 203 IGFL+ + F+++D+ +A Sbjct: 72 IGFLLYIGFIVVDLEIA 88 >gi|254510638|ref|ZP_05122705.1| flagellar biosynthetic protein FliP [Rhodobacteraceae bacterium KLH11] gi|221534349|gb|EEE37337.1| flagellar biosynthetic protein FliP [Rhodobacteraceae bacterium KLH11] Length = 101 Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 28/42 (66%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTG 75 SIS ++ + T+LS+AP L IM+TCFP I V +ILR G Sbjct: 31 SISARTIQLILLITVLSLAPGLAIMITCFPFLITVLAILRQG 72 >gi|207110048|ref|ZP_03244210.1| flagellar biosynthesis protein FliP [Helicobacter pylori HPKX_438_CA4C1] Length = 104 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 6/83 (7%) Query: 6 FFALFLVTP---ELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 F L L+ P L+ A S+L V +N P D + + T+L +AP L++++ Sbjct: 22 FIFLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVM 81 Query: 60 TCFPRFIIVFSILRTGMGMGSVP 82 T F R I+VFS LRT +G P Sbjct: 82 TSFTRLIVVFSFLRTALGTQQTP 104 >gi|9663110|emb|CAC01118.1| FliP flagellar protein, truncated [Helicobacter pylori] Length = 51 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 27/40 (67%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPP 83 + T+L +AP L++++T F R I+VFS LRT +G PP Sbjct: 9 ALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQTPP 48 >gi|321399653|emb|CBJ44655.1| putative type III secretion system protein HcrR [Pseudomonas sp. MTR-J5-327] Length = 52 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 42/52 (80%) Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 F++ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GW+ L+++L S++ Sbjct: 1 FIVIDLIVSNLLLALGMQMVSPMTISLPLKLLLFVLVQGWTRLLDSLFYSYL 52 >gi|321399836|emb|CBJ44673.1| putative type III secretion system protein HcrR [Pseudomonas sp. MTR-J5-721] Length = 53 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 42/53 (79%) Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 PF++I +IV+ +++A+GM M+ P +ISLP K++ FVL+ GW+ L+++L S++ Sbjct: 1 PFIVIGLIVSNLLLALGMQMVSPMTISLPLKLLLFVLVQGWTRLLDSLFYSYL 53 >gi|330985215|gb|EGH83318.1| type III secretion system protein YscR [Pseudomonas syringae pv. lachrymans str. M301315] Length = 133 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 16/57 (28%), Positives = 34/57 (59%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 + + + P+ ++ +T F + +V ++R +G+ PPNLV+ +AL ++ YV +P Sbjct: 14 VVATIGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIALILSVYVTTP 70 >gi|51587246|emb|CAE53639.1| putative HrcR protein [Pseudomonas syringae pv. syringae] gi|51587250|emb|CAE53642.1| putative HrcR protein [Pseudomonas syringae pv. phaseolicola] Length = 53 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 43/53 (81%) Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 PF++ID+IV+ +++A+GM M+ P ++SLP K++ FVL+ GWS L+++L S++ Sbjct: 1 PFIVIDLIVSNLLLALGMQMVSPMTLSLPLKLLLFVLVSGWSRLLDSLFYSYM 53 >gi|130855423|gb|ABO32589.1| SpaP [Sodalis endosymbiont of Craterina melbae] Length = 48 Score = 38.9 bits (89), Expect = 0.64, Method: Composition-based stats. Identities = 15/35 (42%), Positives = 27/35 (77%) Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 MM+ P ++S+P K++ FV++DGW+LL + LV ++ Sbjct: 1 MMMSPITLSVPIKLVLFVVLDGWTLLSQGLVLQYL 35 >gi|51587270|emb|CAE53657.1| putative HrcR [Pseudomonas fluorescens] Length = 49 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 23/49 (46%), Positives = 39/49 (79%) Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GWS L+++L S++ Sbjct: 1 IDLIVSNLLLALGMQMVSPMTISLPLKLLLFVLVSGWSRLLDSLFLSYL 49 >gi|158295424|ref|XP_001688797.1| gustatory receptor (AGAP006143-PD) [Anopheles gambiae str. PEST] gi|157016031|gb|EDO63803.1| gustatory receptor (AGAP006143-PD) [Anopheles gambiae str. PEST] Length = 370 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 2/67 (2%) Query: 20 KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79 SL VM + +DL ++ + IF ++ + +L I VTC IVF ++ G+G+ Sbjct: 206 NHSLQTVMALGSDLE--SFKRKCSSIFGLMQLLHLLNIFVTCSVEAYIVFHVVDMGLGIH 263 Query: 80 SVPPNLV 86 VP NLV Sbjct: 264 YVPMNLV 270 >gi|213028920|ref|ZP_03343367.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 125 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 15/43 (34%), Positives = 28/43 (65%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMT 95 P ++ TCF +F IVF ++R +G+ +P N+ + S+AL ++ Sbjct: 82 PFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNSVALLLS 124 >gi|330947078|gb|EGH47860.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. pisi str. 1704B] Length = 28 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 14/25 (56%), Positives = 20/25 (80%) Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245 +PFK++ FVL+DGW+L+V L SF Sbjct: 1 MPFKIMLFVLVDGWALIVGTLAGSF 25 >gi|284810383|gb|ADB95983.1| putative HrcR [Pseudomonas cichorii] gi|284810395|gb|ADB95992.1| putative HrcR [Pseudomonas cichorii] gi|284810407|gb|ADB96001.1| putative HrcR [Pseudomonas cichorii] gi|284810411|gb|ADB96004.1| putative HrcR [Pseudomonas cichorii] gi|284810415|gb|ADB96007.1| putative HrcR [Pseudomonas cichorii] Length = 30 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 14/29 (48%), Positives = 23/29 (79%) Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +ISLP K++ FVL+DGW+ L++ L S++ Sbjct: 2 TISLPLKILLFVLVDGWTRLLDGLFYSYM 30 >gi|51587302|emb|CAE53681.1| putative HrcR protein [Pseudomonas fluorescens] Length = 48 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 22/48 (45%), Positives = 38/48 (79%) Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 D+IV+ +++A+GM M+ P +ISLP K++ FVL+ GWS L+++L S++ Sbjct: 1 DLIVSNLLLALGMQMVSPMTISLPLKLLLFVLVTGWSRLLDSLFLSYL 48 >gi|296806037|ref|XP_002843838.1| oligopeptide transporter [Arthroderma otae CBS 113480] gi|238845140|gb|EEQ34802.1| oligopeptide transporter [Arthroderma otae CBS 113480] Length = 506 Score = 35.0 bits (79), Expect = 8.3, Method: Compositional matrix adjust. Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 20/108 (18%) Query: 25 DVMNIPADLSISTWIVR--TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82 +++ +PA L + W+ R + IFT + +A ++ T FP S ++TG+ Sbjct: 79 NLLPVPASLLVDGWLGRFLSLQIFTAIYVAGSAILFATSFP------SQMQTGVATIGFI 132 Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130 P ++I++ L ++ +QP + +Q TET RV + Sbjct: 133 PAAILIAIGL------------GGVQAAVQPFIADQYTETKMRVRVTK 168 Searching..................................................done Results from round 2 >gi|254780372|ref|YP_003064785.1| flagellar biosynthesis protein FliP [Candidatus Liberibacter asiaticus str. psy62] gi|254040049|gb|ACT56845.1| flagellar biosynthesis protein FliP [Candidatus Liberibacter asiaticus str. psy62] Length = 246 Score = 251 bits (641), Expect = 8e-65, Method: Composition-based stats. Identities = 246/246 (100%), Positives = 246/246 (100%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT Sbjct: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT Sbjct: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE Sbjct: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN Sbjct: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 Query: 241 LVKSFI 246 LVKSFI Sbjct: 241 LVKSFI 246 >gi|315121841|ref|YP_004062330.1| flagellar biosynthesis protein FliP [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495243|gb|ADR51842.1| flagellar biosynthesis protein FliP [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 246 Score = 238 bits (607), Expect = 7e-61, Method: Composition-based stats. Identities = 211/246 (85%), Positives = 232/246 (94%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 MIRY FF F V PE VFA+SSLHD+M IP +LS+STWIVRTFG+FTILSI PILLIMVT Sbjct: 1 MIRYLFFGFFFVVPESVFAQSSLHDIMEIPPNLSVSTWIVRTFGLFTILSIVPILLIMVT 60 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 CFPRFIIVFSILRTGMGMGS+PPNLVIISLALFMTFYVMSPTLDRSIEMG+QPL++N+IT Sbjct: 61 CFPRFIIVFSILRTGMGMGSIPPNLVIISLALFMTFYVMSPTLDRSIEMGVQPLISNKIT 120 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 ET AI+R+AEPFW+FM+NNTREKDL LFM+MA S+H+NTDI K+DHIEYRILIPSFMISE Sbjct: 121 ETVAIKRIAEPFWIFMKNNTREKDLFLFMEMAKSTHKNTDIKKDDHIEYRILIPSFMISE 180 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK+IFFVLIDGW LLVEN Sbjct: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKIIFFVLIDGWGLLVEN 240 Query: 241 LVKSFI 246 LV+SF+ Sbjct: 241 LVRSFV 246 >gi|312621584|ref|YP_004023197.1| flagellar biosynthetic protein flip [Caldicellulosiruptor kronotskyensis 2002] gi|312202051|gb|ADQ45378.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor kronotskyensis 2002] Length = 252 Score = 235 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 103/231 (44%), Positives = 160/231 (69%), Gaps = 4/231 (1%) Query: 15 ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74 E+ FA +SL+ + P + + + ++ TIL++AP +LIM+T F R +IV +R Sbjct: 25 EIAFATASLNINLGNPQNPNDVSSALQLIIFLTILTLAPSILIMMTSFTRILIVLGFIRN 84 Query: 75 GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134 +G +PPN ++I LALF+TF+VM+P D+ QP +N +IT A++R EP Sbjct: 85 ALGTQQMPPNQILIGLALFLTFFVMAPVTDKIYTQAYQPYINGRITSQEALKRAEEPLKE 144 Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194 FM NTR+KDL LF+ +++ + T + R+++P+F+ISEL+ +FE+GFLI +P Sbjct: 145 FMLKNTRKKDLDLFVKLSNVN----PNTNVKDLPLRVVVPAFIISELKSAFEMGFLIYVP 200 Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 FLIIDM+VA+I+M+MGM+M+PP ISLPFK++ F+L+DGW+L+VE+LV+SF Sbjct: 201 FLIIDMVVASILMSMGMLMIPPVMISLPFKILLFILVDGWNLVVESLVRSF 251 >gi|312126835|ref|YP_003991709.1| flagellar biosynthetic protein flip [Caldicellulosiruptor hydrothermalis 108] gi|311776854|gb|ADQ06340.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor hydrothermalis 108] Length = 253 Score = 235 bits (599), Expect = 5e-60, Method: Composition-based stats. Identities = 104/235 (44%), Positives = 160/235 (68%), Gaps = 4/235 (1%) Query: 11 LVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70 V E+ FA +SL+ + P + + ++ TIL++AP +LIM+T F R +IV Sbjct: 22 CVKKEIAFATASLNINLGSPQNPKDVSSALQLIIFLTILTLAPSILIMMTSFTRILIVLG 81 Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130 +R +G +PPN ++I LALF+TF+VM+P D+ QP +N +IT A++R E Sbjct: 82 FVRNALGTQQMPPNQILIGLALFLTFFVMAPVTDKIYTQAYQPYINGRITSQEALKRAEE 141 Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190 P FM NTR+KDL LF+ +++ + T + R+++P+F+ISEL+ +FE+GFL Sbjct: 142 PLKEFMLKNTRKKDLDLFVKLSNVN----PNTNVKDLPLRVVVPAFIISELKSAFEMGFL 197 Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 I +PFLIIDM+VA+I+M+MGM+M+PP ISLPFK++ F+L+DGW+L+VE+LV+SF Sbjct: 198 IYVPFLIIDMVVASILMSMGMLMIPPVMISLPFKILLFILVDGWNLVVESLVRSF 252 >gi|238924154|ref|YP_002937670.1| flagellar biosynthetic protein FliP [Eubacterium rectale ATCC 33656] gi|238875829|gb|ACR75536.1| flagellar biosynthetic protein FliP [Eubacterium rectale ATCC 33656] gi|291524887|emb|CBK90474.1| flagellar biosynthetic protein FliP [Eubacterium rectale DSM 17629] gi|291529028|emb|CBK94614.1| flagellar biosynthetic protein FliP [Eubacterium rectale M104/1] Length = 299 Score = 234 bits (598), Expect = 7e-60, Method: Composition-based stats. Identities = 96/215 (44%), Positives = 146/215 (67%), Gaps = 5/215 (2%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 + + VR F + T+LS+AP +LIM+T F R IIV +RT +G + PPN V++ L Sbjct: 89 NESGSLSTPVRMFLVLTVLSLAPSILIMLTSFTRIIIVLHFVRTAIGTQTAPPNQVLVGL 148 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 ALF+T ++M PT + E I+PL +IT+ AI+ PF FM T+ KD+ LF+D Sbjct: 149 ALFLTLFIMWPTFSQVNEKAIKPLDEGKITQQEAIKEAEGPFREFMYGQTQTKDIKLFVD 208 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 ++ + D + + L+P+F++SELR +F +GFLI +PF++IDM+V++++M+MG Sbjct: 209 ISG-----DEYDDYDDVPFTTLVPAFILSELRTAFILGFLIYIPFIVIDMVVSSVLMSMG 263 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMMLPPT+IS+PFKV+ F+L DGW L++ NLVK+F Sbjct: 264 MMMLPPTTISMPFKVLLFILADGWDLVIGNLVKTF 298 >gi|222530123|ref|YP_002574005.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor bescii DSM 6725] gi|222456970|gb|ACM61232.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor bescii DSM 6725] Length = 252 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 101/235 (42%), Positives = 159/235 (67%), Gaps = 4/235 (1%) Query: 11 LVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70 E+ FA +SL+ + + + + ++ TIL++AP +LIM+T F R +IV Sbjct: 21 CAKKEIAFAAASLNINLGNSQNPNDVSSALQLIIFLTILTLAPSILIMMTSFTRILIVLG 80 Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130 +R +G +PPN ++I LALF+TF+VM+P D+ QP +N +IT A++R E Sbjct: 81 FIRNALGTQQMPPNQILIGLALFLTFFVMAPVTDKIYIQAYQPYINGRITSQEALKRAEE 140 Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190 P FM NTR+KDL LF+ +++ + T + R+++P+F+ISEL+ +FE+GFL Sbjct: 141 PLKEFMLKNTRKKDLDLFVKLSNVN----PNTNVKDLPLRVVVPAFIISELKSAFEMGFL 196 Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 I +PFLIIDM+VA+I+M+MGM+M+PP ISLPFK++ F+L+DGW+L++E+LV+SF Sbjct: 197 IYVPFLIIDMVVASILMSMGMLMIPPVMISLPFKILLFILVDGWNLVIESLVRSF 251 >gi|312876513|ref|ZP_07736496.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor lactoaceticus 6A] gi|311796724|gb|EFR13070.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor lactoaceticus 6A] Length = 252 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 102/242 (42%), Positives = 160/242 (66%), Gaps = 4/242 (1%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63 + E+ FA +S++ + P + + ++ TIL++AP +LIM+T F Sbjct: 14 FLILITTCAKKEIAFASASININLGSPQNPKDVSSALQLIIFLTILTLAPSILIMMTSFT 73 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 R +IV +R +G +PPN ++I LALF+TF+VM+P D+ QP +N +IT Sbjct: 74 RILIVLGFVRNALGTQQMPPNQILIGLALFLTFFVMAPVTDKIYTQAYQPYINGRITSQE 133 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 A++R EP FM NTR+KDL LF+ +++ + T + R+++P+F+ISEL+ Sbjct: 134 ALKRAEEPLKEFMLKNTRKKDLDLFVKLSNVN----PNTNVKDLPLRVVVPAFIISELKS 189 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 +FE+GFLI +PFLIIDM+VA+I+M+MGM+M+PP ISLPFK++ F+L+DGW+L+VE+LV+ Sbjct: 190 AFEMGFLIYVPFLIIDMVVASILMSMGMLMIPPVMISLPFKILLFILVDGWNLVVESLVR 249 Query: 244 SF 245 SF Sbjct: 250 SF 251 >gi|302872555|ref|YP_003841191.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor obsidiansis OB47] gi|302575414|gb|ADL43205.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor obsidiansis OB47] Length = 253 Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats. Identities = 100/231 (43%), Positives = 156/231 (67%), Gaps = 4/231 (1%) Query: 15 ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74 ++ FA +S ++ P + + ++ TIL++AP +LIM+T F R +IV +R Sbjct: 26 QIAFASASFSINLDNPQNPKDVSSALQLIIFLTILTLAPSILIMMTSFTRILIVLGFVRN 85 Query: 75 GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134 +G +PPN ++I LALF+TF+VM+P D+ QP + QIT A++R +P Sbjct: 86 ALGTQQMPPNQILIGLALFLTFFVMAPVTDKIYTQAYQPYIKGQITSQEALKRAEQPLKE 145 Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194 FM NTR+KDL LF+ + + + T + R+++P+F+ISEL+ +FE+GFLI +P Sbjct: 146 FMLKNTRKKDLDLFVKLGNIN----PNTNVKDLPIRVVVPAFIISELKSAFEMGFLIYVP 201 Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 FLIIDM+VA+I+M+MGM+M+PP ISLPFK++ F+L+DGW+L+VE+LV+SF Sbjct: 202 FLIIDMVVASILMSMGMLMIPPVMISLPFKILLFILVDGWNLVVESLVRSF 252 >gi|312792663|ref|YP_004025586.1| flagellar biosynthetic protein flip [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179803|gb|ADQ39973.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor kristjanssonii 177R1B] Length = 253 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 103/236 (43%), Positives = 159/236 (67%), Gaps = 4/236 (1%) Query: 10 FLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVF 69 E+ FA +SL+ + P + + ++ TIL++AP +LIM+T F R +IV Sbjct: 21 VCAKKEIAFASASLNINLGSPQNPKDVSSALQLLIFLTILTLAPSILIMMTSFTRILIVL 80 Query: 70 SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129 +R +G +PPN ++I LALF+TF+VM+P D+ QP +N +IT A++R Sbjct: 81 GFVRNALGTQQMPPNQILIGLALFLTFFVMAPVTDKIYTQAYQPYINGRITSQEALKRAE 140 Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189 EP FM NTR+KDL LF+ +++ + T + R+++P+F+ISEL+ +FE+GF Sbjct: 141 EPLKEFMLKNTRKKDLDLFVKLSNVN----PNTNVKDLPLRVVVPAFIISELKSAFEMGF 196 Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LI +PFLIIDM+VA+I+M+MGM+M+PP ISLPFK++ F+L+DGW+L+VE+LV+SF Sbjct: 197 LIYVPFLIIDMVVASILMSMGMLMIPPVMISLPFKILLFILVDGWNLVVESLVRSF 252 >gi|302384102|ref|YP_003819925.1| flagellar biosynthetic protein FliP [Brevundimonas subvibrioides ATCC 15264] gi|302194730|gb|ADL02302.1| flagellar biosynthetic protein FliP [Brevundimonas subvibrioides ATCC 15264] Length = 325 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 97/219 (44%), Positives = 149/219 (68%), Gaps = 4/219 (1%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 +++ ++ +V+ G+ T+LS+AP ++IM T F R I+V S+LRT +GM PPN V Sbjct: 104 LDLGTGAGLTERVVQLVGLMTVLSLAPSIVIMTTSFVRIIVVLSLLRTALGMQQSPPNAV 163 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 ++SLALF++ VM+PT + + GI+PLM+ Q+ A +EP FM + DL+ Sbjct: 164 LVSLALFLSAIVMAPTWQDAYDSGIRPLMDQQMELPQAFDLASEPVKTFMLAQVDQGDLA 223 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 LF ++ + + R++ P+FMISEL+++FEIGFL+ +PFL+ID++VA+++ Sbjct: 224 LFTRLSRIEAPTQTV----DLPLRVVTPAFMISELKKAFEIGFLLFVPFLVIDLVVASVL 279 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+MGMMMLPP ISLPFK+IFFVL+DGW L+ +LV+SF Sbjct: 280 MSMGMMMLPPVVISLPFKLIFFVLVDGWRLVAGSLVESF 318 >gi|186477688|ref|YP_001859158.1| flagellar biosynthesis protein FliP [Burkholderia phymatum STM815] gi|184194147|gb|ACC72112.1| flagellar biosynthetic protein FliP [Burkholderia phymatum STM815] Length = 281 Score = 227 bits (579), Expect = 9e-58, Method: Composition-based stats. Identities = 100/242 (41%), Positives = 153/242 (63%), Gaps = 7/242 (2%) Query: 8 ALFLVTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64 AL L P L A+++ N P + + V+T + T+LS P +++M+T F R Sbjct: 44 ALMLAAPTLSHAQTAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTR 103 Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124 IIV S+LR +G + PPN V++ LALF+T +VMSP LD++ G +P I A Sbjct: 104 IIIVLSLLRQAIGAPTTPPNQVLVGLALFLTLFVMSPVLDKAYNDGYKPFSEGTIQMDEA 163 Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184 ++R PF FM TRE DL+LF ++H+ + + + +L+PSF+ SEL+ Sbjct: 164 VKRGVAPFKAFMLKQTRESDLALFARISHAP----PMQGPEDVPLSLLVPSFVTSELKTG 219 Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 F+IGF + +PF+IIDM+VA+++M+MGMMM+ P +ISLPFK++ FVL+DGW L+V +L +S Sbjct: 220 FQIGFTVFIPFVIIDMVVASVLMSMGMMMISPATISLPFKLMLFVLVDGWQLIVGSLAQS 279 Query: 245 FI 246 F+ Sbjct: 280 FV 281 >gi|312135838|ref|YP_004003176.1| flagellar biosynthetic protein flip [Caldicellulosiruptor owensensis OL] gi|311775889|gb|ADQ05376.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor owensensis OL] Length = 253 Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats. Identities = 100/242 (41%), Positives = 155/242 (64%), Gaps = 4/242 (1%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63 EL FA ++++ + P + + ++ TIL++ P +LIM+T F Sbjct: 15 LSILITVCFKKELAFATANININLGNPQNPDDISSALQLIIFLTILTLVPSILIMMTSFT 74 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 R +IV +R +G +PPN ++I LALF+TF+VM+P D+ QP +N +IT Sbjct: 75 RILIVLGFVRNALGTQQMPPNQILIGLALFLTFFVMAPVTDKIYTQAYQPYINGEITSQE 134 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 A++R P FM NTR+KDL LF+ + + + T + R+++P+F+ISEL+ Sbjct: 135 ALKRAEVPLKEFMLKNTRKKDLDLFVKLGNVN----PNTNIRDLPLRVVVPAFIISELKS 190 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 +FE+GFLI +PFLIIDM VA+I+M+MGM+M+PP ISLPFK++ F+L+DGW+L+VE+LV+ Sbjct: 191 AFEMGFLIYVPFLIIDMTVASILMSMGMLMIPPVMISLPFKILLFILVDGWNLVVESLVR 250 Query: 244 SF 245 SF Sbjct: 251 SF 252 >gi|86356318|ref|YP_468210.1| flagellar biosynthesis protein FliP [Rhizobium etli CFN 42] gi|86280420|gb|ABC89483.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CFN 42] Length = 245 Score = 227 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 154/246 (62%), Positives = 200/246 (81%), Gaps = 3/246 (1%) Query: 1 MIRY-CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 MIR+ F A + PEL A+ D++N+P D S++ WI+RTFG+ T+LS+AP +LIMV Sbjct: 1 MIRFIVFLAAMMAVPELAVAQQLPTDLLNVPVDGSVAAWIIRTFGLLTVLSVAPGILIMV 60 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T FPRF+I FSILR+GMG+ S P N++++SL+LFMTFYVMSPT D++ + G+QPL+ NQI Sbjct: 61 TSFPRFVIAFSILRSGMGLSSTPSNMILLSLSLFMTFYVMSPTFDQAWQNGVQPLLANQI 120 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 ET A+QR+AEPF FM NTR+KDL+LF+D+A R +I D I+YR+LIP+FMIS Sbjct: 121 NETEAVQRIAEPFRTFMAANTRDKDLALFVDLAR--ERGQNIQTTDPIDYRVLIPAFMIS 178 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 E+RR FEIGFL++LPFL+ID+IVATI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV Sbjct: 179 EIRRGFEIGFLVVLPFLVIDLIVATITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVG 238 Query: 240 NLVKSF 245 +LV+SF Sbjct: 239 SLVRSF 244 >gi|190890369|ref|YP_001976911.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CIAT 652] gi|190695648|gb|ACE89733.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CIAT 652] gi|327193042|gb|EGE59954.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CNPAF512] Length = 245 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 154/246 (62%), Positives = 200/246 (81%), Gaps = 3/246 (1%) Query: 1 MIRYC-FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 MIR+ F A + PEL A+ D++N+P D S++ WI+RTFG+ T+LS+AP +LIMV Sbjct: 1 MIRFIIFLAAMMAVPELAVAQQLPTDLLNVPVDGSVAAWIIRTFGLLTVLSVAPGILIMV 60 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T FPRF+I FSILR+GMG+ S P N++++SL+LFMTFYVMSPT D++ + G+QPL+ NQI Sbjct: 61 TSFPRFVIAFSILRSGMGISSTPSNMILLSLSLFMTFYVMSPTFDQAWQNGVQPLLANQI 120 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 ET A+QR+AEPF FM NTR+KDL+LF+D+A R +I D I+YR+LIP+FMIS Sbjct: 121 NETEAVQRIAEPFRTFMAANTRDKDLALFVDLAR--ERGQNIQTTDPIDYRVLIPAFMIS 178 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 E+RR FEIGFL++LPFL+ID+IVATI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV Sbjct: 179 EIRRGFEIGFLVVLPFLVIDLIVATITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVG 238 Query: 240 NLVKSF 245 +LV+SF Sbjct: 239 SLVRSF 244 >gi|94314220|ref|YP_587429.1| flagellar biosynthesis protein FliP [Cupriavidus metallidurans CH34] gi|93358072|gb|ABF12160.1| flagellar biosynthesis protein FliP [Cupriavidus metallidurans CH34] Length = 264 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 106/235 (45%), Positives = 154/235 (65%), Gaps = 7/235 (2%) Query: 14 PELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71 PE A+S L V + P TW ++T + T LS P ++M+T F R IIV + Sbjct: 34 PESALAQS-LPGVTSRPGPGGGQTWSLSIQTLVLLTSLSFLPAAMLMMTGFTRIIIVLGL 92 Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131 LR +G S PPN V++ L+LF+TF+VMSP D+ QPL N+I+ TA QR A P Sbjct: 93 LRNALGTASSPPNQVLVGLSLFLTFFVMSPVFDKVYTDAYQPLSENKISLETAAQRAAVP 152 Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191 FM TREKDL++F MA + ++ + + + +L+P+F+ SEL+ +F+IGF I Sbjct: 153 LRAFMLRQTREKDLAMFAQMAKTP----ELQGPEDVPFTVLVPAFVTSELKTAFQIGFTI 208 Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +PFLIID++VA+++MAMGMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF+ Sbjct: 209 FIPFLIIDLVVASVLMAMGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSFM 263 >gi|300722650|ref|YP_003711940.1| flagellar biosynthesis protein [Xenorhabdus nematophila ATCC 19061] gi|297629157|emb|CBJ89753.1| flagellar biosynthesis [Xenorhabdus nematophila ATCC 19061] Length = 272 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 99/248 (39%), Positives = 150/248 (60%), Gaps = 7/248 (2%) Query: 1 MIRYCFFALFLVTPELVF-AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLI 57 + R + L P A + L +++ P +W V+T T L P L+ Sbjct: 27 LARVITLLMVLFLPLFSMNAAAELPGIISQPLPNGGQSWSLPVQTLIFITALGFIPAALL 86 Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 M+T F R IIV +LR +G S PPN V++ LALFMTF++M+P D+ + P + Sbjct: 87 MMTSFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFMTFFIMAPVFDKVYQDAYLPYNED 146 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177 +IT A+ + ++P FM TRE DL+LF +A T D + R+L+P+F+ Sbjct: 147 KITLEAALDKGSKPLRQFMLRQTRENDLALFARLADQEAFET----ADSVPLRVLVPAFI 202 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 SEL+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL Sbjct: 203 TSELKTAFQIGFTLFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLL 262 Query: 238 VENLVKSF 245 + +L +SF Sbjct: 263 LGSLAQSF 270 >gi|269976283|ref|ZP_06183279.1| flagellar biosynthesis protein FliP [Mobiluncus mulieris 28-1] gi|269935612|gb|EEZ92150.1| flagellar biosynthesis protein FliP [Mobiluncus mulieris 28-1] Length = 528 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 81/209 (38%), Positives = 133/209 (63%), Gaps = 4/209 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 T V F + T+LS+AP LL+M+T F + IV ++ R +G+ +PP V+ LA+F++ Sbjct: 323 TTTVLVFLLITVLSVAPSLLLMMTSFTKIFIVLAMARNALGLNQIPPTQVLSGLAIFLSL 382 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 ++M+PT++ +QPL + +I + +PF FM TRE+D++L A+ + Sbjct: 383 FIMAPTVNTLWTDVVQPLTDGKIEVQEVFKLGEKPFRDFMGPLTREEDIALMTRAANRPN 442 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 D + L+P+FMISE+R +F IGF++ +PFL+ID++V +M+MGMMMLPP Sbjct: 443 PE----SLDKTPFTTLVPAFMISEVRSAFIIGFVVFIPFLVIDLVVGAALMSMGMMMLPP 498 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +SLPFKV+ FV++DGW +L + L+ ++ Sbjct: 499 VMVSLPFKVLLFVMVDGWGMLTQTLIGTY 527 >gi|227876756|ref|ZP_03994865.1| possible flagellar biosynthesis protein FliP [Mobiluncus mulieris ATCC 35243] gi|227842653|gb|EEJ52853.1| possible flagellar biosynthesis protein FliP [Mobiluncus mulieris ATCC 35243] Length = 502 Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats. Identities = 81/209 (38%), Positives = 133/209 (63%), Gaps = 4/209 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 T V F + T+LS+AP LL+M+T F + IV ++ R +G+ +PP V+ LA+F++ Sbjct: 297 TTTVLVFLLITVLSVAPSLLLMMTSFTKIFIVLAMARNALGLNQIPPTQVLSGLAIFLSL 356 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 ++M+PT++ +QPL + +I + +PF FM TRE+D++L A+ + Sbjct: 357 FIMAPTVNTLWTDVVQPLTDGKIEVQEVFKLGEKPFRDFMGPLTREEDIALMTRAANRPN 416 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 D + L+P+FMISE+R +F IGF++ +PFL+ID++V +M+MGMMMLPP Sbjct: 417 PE----SLDKTPFTTLVPAFMISEVRSAFIIGFVVFIPFLVIDLVVGAALMSMGMMMLPP 472 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +SLPFKV+ FV++DGW +L + L+ ++ Sbjct: 473 VMVSLPFKVLLFVMVDGWGMLTQTLIGTY 501 >gi|116250488|ref|YP_766326.1| flagellar biosynthesis protein FliP [Rhizobium leguminosarum bv. viciae 3841] gi|241203112|ref|YP_002974208.1| flagellar biosynthesis protein FliP [Rhizobium leguminosarum bv. trifolii WSM1325] gi|115255136|emb|CAK06210.1| putative flagellar biosynthetic protein FliP [Rhizobium leguminosarum bv. viciae 3841] gi|240857002|gb|ACS54669.1| flagellar biosynthetic protein FliP [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 245 Score = 225 bits (573), Expect = 5e-57, Method: Composition-based stats. Identities = 156/246 (63%), Positives = 199/246 (80%), Gaps = 3/246 (1%) Query: 1 MIRY-CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 MIR F A + PEL A+ D++N+P D S++ WI+RTFG+ TILS+AP +LIMV Sbjct: 1 MIRLIVFLAAMMAVPELAVAQQLPTDLLNVPVDGSVAAWIIRTFGLLTILSVAPGILIMV 60 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T FPRFII FSILR+GMG+ S P N++++SL+LFMTFYVMSPT D++ + G+QPL+ NQI Sbjct: 61 TSFPRFIIAFSILRSGMGLSSTPSNMILLSLSLFMTFYVMSPTFDQAWQNGVQPLLANQI 120 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 ET A+QR+AEPF FM NTR+KDL+LF+D+A R +I D I+YR+LIP+FMIS Sbjct: 121 NETEAVQRIAEPFRTFMAANTRDKDLALFVDLAR--ERGQNIQTTDPIDYRVLIPAFMIS 178 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 E+RR FEIGFL++LPFL+ID+IVATI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV Sbjct: 179 EIRRGFEIGFLVVLPFLVIDLIVATITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVG 238 Query: 240 NLVKSF 245 +LV+SF Sbjct: 239 SLVRSF 244 >gi|329298603|ref|ZP_08255939.1| flagellar biosynthesis protein FliP [Plautia stali symbiont] Length = 341 Score = 225 bits (573), Expect = 5e-57, Method: Composition-based stats. Identities = 97/227 (42%), Positives = 148/227 (65%), Gaps = 6/227 (2%) Query: 21 SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 + L +++ P +W V+T T L+ P +L+M+T F R IIVF +LR +G Sbjct: 117 AQLPGLISQPLANGGQSWSLPVQTLVFITSLTFIPAVLLMITSFTRIIIVFGLLRNALGT 176 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 S PPN V++ LALF+ F++M+PT D+ P ++I+ AI + A+P FM Sbjct: 177 PSAPPNQVMLGLALFLNFFIMAPTFDKIYTDAYLPFSQDKISMDVAIDKGAQPLREFMLR 236 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 TRE DL+LF +A+S I + + RIL+P+++ SEL+ +F+IGF + +PFLII Sbjct: 237 QTRETDLALFARLANS----APIQGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLII 292 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 D++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LLV +L +SF Sbjct: 293 DLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLVGSLAQSF 339 >gi|222147577|ref|YP_002548534.1| flagellar biosynthesis protein FliP [Agrobacterium vitis S4] gi|221734565|gb|ACM35528.1| flagellar biosynthetic protein [Agrobacterium vitis S4] Length = 245 Score = 225 bits (573), Expect = 6e-57, Method: Composition-based stats. Identities = 148/246 (60%), Positives = 193/246 (78%), Gaps = 3/246 (1%) Query: 1 MIR-YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 MIR A + PEL A+ + + P D S++ WI+RTFG+ T+LS+AP +LIMV Sbjct: 1 MIRTLILIAAMIAAPELAQAQQLPSNFLTAPVDGSVAAWIIRTFGLLTVLSVAPGILIMV 60 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T FPRF+I FSILR+GMG+ S P N+++ SLALFMTFYVM+P +D++ G++PL++NQI Sbjct: 61 TSFPRFVIAFSILRSGMGLSSTPSNMILTSLALFMTFYVMTPVMDQAWRDGVRPLLDNQI 120 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 TE A+ R+AEPF FM NNTREKDL LF+D+A+ + T + ++YR+LIP+FM+S Sbjct: 121 TEAEAVPRIAEPFRGFMSNNTREKDLRLFIDLANERGQTTVVEG--KVDYRVLIPAFMLS 178 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 E+RR FEIGFLIILPFL+IDMIV+TI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV Sbjct: 179 EIRRGFEIGFLIILPFLVIDMIVSTITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVG 238 Query: 240 NLVKSF 245 +LV+SF Sbjct: 239 SLVRSF 244 >gi|209547934|ref|YP_002279851.1| flagellar biosynthesis protein FliP [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533690|gb|ACI53625.1| flagellar biosynthetic protein FliP [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 245 Score = 224 bits (572), Expect = 6e-57, Method: Composition-based stats. Identities = 156/246 (63%), Positives = 198/246 (80%), Gaps = 3/246 (1%) Query: 1 MIRY-CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 MIR F A + PEL A+ D++N+P D S++ WI+RTFG+ TILS+AP +LIMV Sbjct: 1 MIRLIVFLAAMMAVPELAVAQQLPTDLLNVPVDGSVAAWIIRTFGLLTILSVAPGILIMV 60 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T FPRFII FSILR+GMG+ S P N++++SL+LFMTFYVMSPT D++ + G+QPL+ NQI Sbjct: 61 TSFPRFIIAFSILRSGMGLSSTPSNMILLSLSLFMTFYVMSPTFDQAWQNGVQPLLANQI 120 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 ET A+QR+AEPF FM NTR+KDL+LF+D+A R I D I+YR+LIP+FMIS Sbjct: 121 NETEAVQRIAEPFRTFMAANTRDKDLALFVDLAR--ERGQTIQTTDPIDYRVLIPAFMIS 178 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 E+RR FEIGFL++LPFL+ID+IVATI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV Sbjct: 179 EIRRGFEIGFLVVLPFLVIDLIVATITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVG 238 Query: 240 NLVKSF 245 +LV+SF Sbjct: 239 SLVRSF 244 >gi|73539701|ref|YP_300068.1| flagellar biosynthesis protein FliP [Ralstonia eutropha JMP134] gi|72123038|gb|AAZ65224.1| Flagellar transport protein FliP [Ralstonia eutropha JMP134] Length = 265 Score = 224 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 101/228 (44%), Positives = 150/228 (65%), Gaps = 6/228 (2%) Query: 21 SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 +L V + P W ++T + T LS P ++M+T F R +IV +LR +G Sbjct: 41 QALPGVTSKPGPGGGQIWSLSIQTLVLLTSLSFLPAAVLMMTGFTRIVIVLGLLRNALGT 100 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 S PPN V++ L+LF+TF+VMSP LDR +PL N+I+ TA+ + AEP FM Sbjct: 101 ASSPPNQVLVGLSLFLTFFVMSPVLDRVYNDAYKPLSENRISLETAMAKAAEPLKGFMLK 160 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 TREKDL++F MA + ++ + + IL+P+F+ SEL+ +F+IGF I +PFLII Sbjct: 161 QTREKDLAMFAQMAKAP----EMQGPEEVPMSILVPAFVTSELKTAFQIGFTIFIPFLII 216 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 D++VA+++MAMGMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF+ Sbjct: 217 DLVVASVLMAMGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSFM 264 >gi|218460348|ref|ZP_03500439.1| flagellar biosynthesis protein FliP [Rhizobium etli Kim 5] Length = 245 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 154/246 (62%), Positives = 199/246 (80%), Gaps = 3/246 (1%) Query: 1 MIRYC-FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 MIR+ F + PEL A+ D++N+P D S++ WI+RTFG+ TILS+AP +LIMV Sbjct: 1 MIRFIIFLTAMMAVPELAVAQQLPTDLLNVPVDGSVAAWIIRTFGLLTILSVAPGILIMV 60 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T FPRF+I FSILR+GMG+ S P N++++SL+LFMTFYVMSPT D++ + G+QPL+ NQI Sbjct: 61 TSFPRFVIAFSILRSGMGLSSTPSNMILLSLSLFMTFYVMSPTFDQAWQSGVQPLLANQI 120 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 ET A+QR+AEPF FM NTR+KDL+LF+D+A R I +D I+YR+LIP+FMIS Sbjct: 121 NETEAVQRIAEPFRTFMAANTRDKDLALFVDLAR--ERGQTIQTSDPIDYRVLIPAFMIS 178 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 E+RR FEIGFL++LPFL+ID+IVATI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV Sbjct: 179 EIRRGFEIGFLVVLPFLVIDLIVATITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVG 238 Query: 240 NLVKSF 245 +LV+SF Sbjct: 239 SLVRSF 244 >gi|21672367|ref|NP_660434.1| type III secretion system protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008468|sp|Q8KA37|FLIP_BUCAP RecName: Full=Flagellar biosynthetic protein fliP gi|21622972|gb|AAM67645.1| flagellar biosynthetic protein FliP [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 379 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 103/243 (42%), Positives = 144/243 (59%), Gaps = 4/243 (1%) Query: 3 RYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCF 62 R + LV+A + + V+T T L+ P L+M+T F Sbjct: 139 RIIPLFFLFLFCPLVYADIPGPTSHILRDGSQTWSLPVQTLIFLTSLTFLPAFLLMMTSF 198 Query: 63 PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122 R IIVF +LR +G PPN +++ LALF+TF++MSPT D+ + P +I Sbjct: 199 TRIIIVFGLLRNALGTPYAPPNQILLGLALFLTFFIMSPTFDQVYKEAYLPFSQEKINMD 258 Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182 AI + A P FM N TR DL LF +AH S D I RIL+PSF+ SEL+ Sbjct: 259 EAIIKGAVPLKKFMLNQTRNSDLELFSKLAHISSYK----NKDEIPMRILLPSFITSELK 314 Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242 +F+IGF I +PFLIID++VA+++MA+GMMM+PP++ISLPFK++ FVL+DGW LLV +L Sbjct: 315 TAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPSTISLPFKLMLFVLVDGWQLLVTSLS 374 Query: 243 KSF 245 +SF Sbjct: 375 QSF 377 >gi|27904581|ref|NP_777707.1| putative bifunctional flagellar biosynthesis protein FliO/FliP [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46395829|sp|Q89AZ2|FLIP_BUCBP RecName: Full=Flagellar biosynthetic protein fliP gi|27903978|gb|AAO26812.1| flagellar biosynthetic protein FliP [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 360 Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats. Identities = 93/241 (38%), Positives = 148/241 (61%), Gaps = 4/241 (1%) Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64 L P +A I + ++T T L+ P +L+M+T F R Sbjct: 122 SLCVFLLFCPSYAYAGIPDVISHTSSDGGQIWSIPIQTLVFITSLTFIPTVLLMMTSFSR 181 Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124 +IVFS+LR+ +G PPN +++ L+L +TF++M+P D+ + P ++I+ TA Sbjct: 182 IVIVFSLLRSALGTPYSPPNQILVGLSLILTFFIMAPIFDKIYQDSYLPFSEDKISIDTA 241 Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184 I R A+P FM N TR+ DL F +A+ S ++ + I R+L+PSF+ SEL+ + Sbjct: 242 IVRGAKPLHKFMVNQTRQVDLEFFSKLANIS----TFSRKEEIPMRVLLPSFITSELKTA 297 Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 F+IGF I +PFLIID++V++++M++GMMM+PP++ISLPFK++ FVL+DGW LL+ +L S Sbjct: 298 FQIGFTIFIPFLIIDLVVSSVLMSLGMMMVPPSTISLPFKLMLFVLVDGWQLLITSLTHS 357 Query: 245 F 245 F Sbjct: 358 F 358 >gi|15616704|ref|NP_239916.1| type III secretion system protein [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|12644517|sp|P57184|FLIP_BUCAI RecName: Full=Flagellar biosynthetic protein fliP gi|25403546|pir||B84939 flagellar biosynthetic protein fliP [imported] - Buchnera sp. (strain APS) gi|10038767|dbj|BAB12802.1| flagellar biosynthetic protein fliP [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 379 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 99/242 (40%), Positives = 146/242 (60%), Gaps = 9/242 (3%) Query: 6 FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFP 63 F L + P A + + + + D TW V +T T L+ P L+M+T F Sbjct: 143 FVFLLSLCPS---AHADMPGLTSHILDDGSQTWSVPVQTLVFLTSLTFLPAFLLMMTSFT 199 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 R +IVF +LR +G PPN +++ LALF+TF++MSPT ++ + P ++ Sbjct: 200 RIVIVFGLLRNALGTPYAPPNQILLGLALFLTFFIMSPTFEKIYKDAYVPFSQEKMNMED 259 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 AI + + P FM N R DL LF +AH S + I RIL+PSF+ SEL+ Sbjct: 260 AILKGSMPLKKFMLNQIRTPDLELFSKLAHISSYK----NKNDIPMRILLPSFITSELKT 315 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 +F+IGF I +PFLIID++VA+++MA+GMMM+PP++ISLPFK++ FVL+DGW LL+ +L Sbjct: 316 AFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPSTISLPFKLMLFVLVDGWQLLITSLAH 375 Query: 244 SF 245 SF Sbjct: 376 SF 377 >gi|219681460|ref|YP_002467845.1| flagellar biosynthetic protein FliP [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471135|ref|ZP_05635134.1| type III secretion system protein [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219624303|gb|ACL30458.1| flagellar biosynthetic protein FliP [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 379 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 99/242 (40%), Positives = 146/242 (60%), Gaps = 9/242 (3%) Query: 6 FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFP 63 F L + P A + + + + D TW V +T T L+ P L+M+T F Sbjct: 143 FVFLLSLCPS---AHADMPGLTSHILDDGSQTWSVPVQTLVFLTSLTFLPAFLLMMTSFT 199 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 R +IVF +LR +G PPN +++ LALF+TF++MSPT ++ + P ++ Sbjct: 200 RIVIVFGLLRNALGTPYAPPNQILLGLALFLTFFIMSPTFEKIYKDAYVPFSQEKMNMED 259 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 AI + + P FM N R DL LF +AH S + I RIL+PSF+ SEL+ Sbjct: 260 AILKGSMPLKKFMLNQIRTPDLELFSKLAHISSYK----NKNDIPMRILLPSFITSELKT 315 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 +F+IGF I +PFLIID++VA+++MA+GMMM+PP++ISLPFK++ FVL+DGW LL+ +L Sbjct: 316 AFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPSTISLPFKLMLFVLVDGWQLLITSLAH 375 Query: 244 SF 245 SF Sbjct: 376 SF 377 >gi|219682016|ref|YP_002468400.1| flagellar biosynthetic protein FliP [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219621749|gb|ACL29905.1| flagellar biosynthetic protein FliP [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311085824|gb|ADP65906.1| putative bifunctional flagellar biosynthesis protein FliO/FliP [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086397|gb|ADP66478.1| putative bifunctional flagellar biosynthesis protein FliO/FliP [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087553|gb|ADP67632.1| putative bifunctional flagellar biosynthesis protein FliO/FliP [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 379 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 99/242 (40%), Positives = 146/242 (60%), Gaps = 9/242 (3%) Query: 6 FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFP 63 F L + P A + + + + D TW V +T T L+ P L+M+T F Sbjct: 143 FVFLLSLCPS---AHADMPGLTSHILDDGSQTWSVPVQTLVFLTSLTFLPAFLLMMTSFT 199 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 R +IVF +LR +G PPN +++ LALF+TF++MSPT ++ + P ++ Sbjct: 200 RIVIVFGLLRNALGTPYAPPNQILLGLALFLTFFIMSPTFEKIYKDAYVPFSQEKMNMED 259 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 AI + + P FM N R DL LF +AH S + I RIL+PSF+ SEL+ Sbjct: 260 AILKGSMPLKKFMLNQIRTPDLELFSKLAHISSYK----NKNDIPMRILLPSFITSELKT 315 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 +F+IGF I +PFLIID++VA+++MA+GMMM+PP++ISLPFK++ FVL+DGW LL+ +L Sbjct: 316 AFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPSTISLPFKLMLFVLVDGWQLLITSLAH 375 Query: 244 SF 245 SF Sbjct: 376 SF 377 >gi|229827384|ref|ZP_04453453.1| hypothetical protein GCWU000182_02772 [Abiotrophia defectiva ATCC 49176] gi|229788322|gb|EEP24436.1| hypothetical protein GCWU000182_02772 [Abiotrophia defectiva ATCC 49176] Length = 283 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 87/220 (39%), Positives = 140/220 (63%), Gaps = 4/220 (1%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 + D +R T+L +AP +LI++T F R I+V +R+ + + PPN V Sbjct: 67 LTTNGDQGGLAATLRIVLALTVLGLAPSILILLTSFTRIIVVLHFVRSALTTQTTPPNQV 126 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 ++ LALF+T+++M+P + ++PL + +I A + +P FM T KD+ Sbjct: 127 LVGLALFLTWFIMAPIFMQINTEALKPLTDGKINFEQAYEVGIKPLRTFMYKQTNTKDIR 186 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 LF+D+A ++ + I +LIP+F+ISELR +F IGF I +PFL+IDM+V++ + Sbjct: 187 LFLDIAGI----DEVKDMEEIPTNVLIPAFIISELRAAFIIGFCIYIPFLVIDMVVSSTL 242 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 M+MGMMMLPPT+IS+PFK++ F+++DGW L++ NLVKSF+ Sbjct: 243 MSMGMMMLPPTTISMPFKILLFIMVDGWDLVIGNLVKSFV 282 >gi|206889470|ref|YP_002249866.1| flagellar biosynthetic protein FliP [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741408|gb|ACI20465.1| flagellar biosynthetic protein FliP [Thermodesulfovibrio yellowstonii DSM 11347] Length = 335 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 101/241 (41%), Positives = 148/241 (61%), Gaps = 8/241 (3%) Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64 F L +++P L FA + L + + T+LS P +LIM+T F R Sbjct: 102 LFSCLLILSPTLCFAAPQ-----SAQGGLFGFSSAIDILVFITLLSFLPAVLIMMTSFTR 156 Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124 +IV S+LR +G SVPPN VII LALF+T ++MSPT+DR PL +I A Sbjct: 157 IVIVLSLLRQALGTPSVPPNQVIIGLALFLTLFIMSPTVDRVYNEAYLPLSKKEINMEEA 216 Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184 I + + PF FM TREKDL+LF ++ + + + +I++P+F + EL+R+ Sbjct: 217 ISKASVPFKEFMLKQTREKDLALFFKLSKTEVK---PATPMDLPMKIVVPAFALGELKRA 273 Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 FEIGFLI LPFL+ID++VA+I+++MGM M+PP IS+PFK++ FVL+DGW L++ +L Sbjct: 274 FEIGFLIFLPFLVIDIVVASILLSMGMFMVPPVMISMPFKLLLFVLVDGWQLIIGSLAGG 333 Query: 245 F 245 F Sbjct: 334 F 334 >gi|28211318|ref|NP_782262.1| flagellar biosynthesis protein FliP [Clostridium tetani E88] gi|28203758|gb|AAO36199.1| flagellar biosynthetic protein fliP [Clostridium tetani E88] Length = 261 Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats. Identities = 92/253 (36%), Positives = 151/253 (59%), Gaps = 15/253 (5%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIP-----------ADLSISTWIVRTFGIFTILSIA 52 + + + L F + +L IP D ++ F + T LSI Sbjct: 12 FLVIGIVFLLTLLCFQQKALAAPGQIPIPRINISPGDGGDPKTYVDNLKLFLMITALSIL 71 Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P ++M+T F R +VF LR MG PPN V++ LALF+T ++M+P + IQ Sbjct: 72 PSFIVMMTSFVRISVVFGFLRNAMGTQQSPPNQVLVGLALFLTIFIMTPVYQIINKEAIQ 131 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P + ++I + A + ++P FM TREKDL LF+++++ T +++ ++ Sbjct: 132 PFVKSEINQEQAFETGSKPLREFMLKQTREKDLKLFVEISNIDKNIT----KENVPLYVV 187 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 +PSF+ISEL+ +F+IGFL+ +PFL+ID++VA+++M+MGM MLPP +SLPFK++ FV++D Sbjct: 188 VPSFIISELKTAFQIGFLLYIPFLVIDLVVASVLMSMGMFMLPPVMVSLPFKLLLFVMVD 247 Query: 233 GWSLLVENLVKSF 245 GW LL+++L+ SF Sbjct: 248 GWHLLIKSLIMSF 260 >gi|307318918|ref|ZP_07598349.1| flagellar biosynthetic protein FliP [Sinorhizobium meliloti AK83] gi|12057226|gb|AAB81419.2| FliP [Sinorhizobium meliloti] gi|306895332|gb|EFN26087.1| flagellar biosynthetic protein FliP [Sinorhizobium meliloti AK83] Length = 245 Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 142/247 (57%), Positives = 195/247 (78%), Gaps = 3/247 (1%) Query: 1 MIRY-CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 M+R+ F + + A+S D++N P D S+++WI+RTFG+ T+LS+AP +LIMV Sbjct: 1 MLRFATFIIAMMAMSGIAGAQSFPADILNTPVDGSVASWIIRTFGLLTVLSVAPGILIMV 60 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T FPRF+I F+ILR+GMG+ + P N++++SLALFMTFYVM+PT DR+ GI PL+ N+I Sbjct: 61 TSFPRFVIAFAILRSGMGLATTPSNMIMVSLALFMTFYVMAPTFDRAWRDGIDPLLKNEI 120 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 +ET AIQR++EPF FM NTR+KDL LF+D+A + + ++ ++ R ++P+FMIS Sbjct: 121 SETDAIQRMSEPFREFMLANTRDKDLQLFIDIAR--EKGQTVVVDEKVDLRAVVPAFMIS 178 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 E+RR FEIGFLI+LPFL+ID+IVATI MAMGMMMLPPT+ISLPFK++FFVLIDGW+LLV Sbjct: 179 EIRRGFEIGFLIMLPFLVIDLIVATITMAMGMMMLPPTAISLPFKILFFVLIDGWNLLVG 238 Query: 240 NLVKSFI 246 +LV+SFI Sbjct: 239 SLVRSFI 245 >gi|227355990|ref|ZP_03840382.1| flagellar biosynthetic protein [Proteus mirabilis ATCC 29906] gi|227163978|gb|EEI48880.1| flagellar biosynthetic protein [Proteus mirabilis ATCC 29906] Length = 256 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 99/248 (39%), Positives = 152/248 (61%), Gaps = 7/248 (2%) Query: 1 MIRYCFFALFLVT---PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLI 57 + R+ FA L+ P FA+ +P + V+T T L P +L+ Sbjct: 11 LKRWPLFASVLILSLLPSHAFAQFPSVISHPLPGGGQNWSLPVQTLIFITALGFIPAVLL 70 Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 M+T F R IIV +LR +G S PPN V++ LALFMTF++M+P D+ + P + Sbjct: 71 MMTSFTRIIIVLGLLRNALGTPSAPPNQVVLGLALFMTFFIMAPVFDKIYQDAYLPFSED 130 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177 +IT A+ ++P FM TRE DL+LF +A + T D + RIL+P+++ Sbjct: 131 KITFEQALDNGSQPLRQFMMQQTRETDLALFARLADAPAFET----RDSVPMRILVPAYI 186 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 SEL+ +F+IGF+I +PFLIID++VA+++MA+GMMM+PP ++SLPFK++ FVL+DGW L+ Sbjct: 187 TSELKTAFQIGFMIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGWQLI 246 Query: 238 VENLVKSF 245 + +L +SF Sbjct: 247 LGSLAQSF 254 >gi|225375339|ref|ZP_03752560.1| hypothetical protein ROSEINA2194_00964 [Roseburia inulinivorans DSM 16841] gi|225212828|gb|EEG95182.1| hypothetical protein ROSEINA2194_00964 [Roseburia inulinivorans DSM 16841] Length = 273 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 100/231 (43%), Positives = 147/231 (63%), Gaps = 5/231 (2%) Query: 15 ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74 S+ ++ D + V+ + TILS+AP +LIM+T + R IIV LRT Sbjct: 47 TRAAEDSTNGLTISYNNDGGSLSAPVKMLLVLTILSLAPSILIMLTSYTRIIIVLHFLRT 106 Query: 75 GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134 +G + PPN V+I+LALF+TF++M PT + IQPL +IT A P Sbjct: 107 AIGTQTAPPNQVLIALALFLTFFIMWPTFQQINTEAIQPLDKGEITTEEAFTVAQGPIRE 166 Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194 FM T+EKDL LF+D++ ++ D + LIP+F++SELR +F IGF+I +P Sbjct: 167 FMYGQTQEKDLKLFVDISDETY-----DSYDDVPMTTLIPAFILSELRAAFIIGFVIYIP 221 Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 F++IDM+VA+++M+MGMMMLPPT+ISLPFK++ F+L DGW L++ +LVK+F Sbjct: 222 FIVIDMVVASVLMSMGMMMLPPTTISLPFKILLFILADGWDLVIGSLVKTF 272 >gi|311086976|gb|ADP67056.1| putative bifunctional flagellar biosynthesis protein FliO/FliP [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 379 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 96/229 (41%), Positives = 142/229 (62%), Gaps = 6/229 (2%) Query: 19 AKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 A + + + + D TW V +T T L+ P L+M+T F R +IVF +LR + Sbjct: 153 AHADMPGLTSHILDDGSQTWSVPVQTLVFLTSLTFLPAFLLMMTSFTRIVIVFGLLRNAL 212 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G PPN +++ LALF+TF++MSPT ++ + P ++ AI + + P FM Sbjct: 213 GTPYAPPNQILLGLALFLTFFIMSPTFEKIYKDAYVPFSQEKMNMEDAILKGSMPLKKFM 272 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 N R DL LF +AH S + I RIL+PSF+ SEL+ +F+IGF I +PFL Sbjct: 273 LNQIRTPDLELFSKLAHISSYK----NKNDIPMRILLPSFITSELKTAFQIGFTIFIPFL 328 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IID++VA+++MA+GMMM+PP++ISLPFK++ FVL+DGW LL+ +L SF Sbjct: 329 IIDLVVASVLMALGMMMVPPSTISLPFKLMLFVLVDGWQLLITSLAHSF 377 >gi|118589975|ref|ZP_01547379.1| flagellar biosynthesis protein [Stappia aggregata IAM 12614] gi|118437472|gb|EAV44109.1| flagellar biosynthesis protein [Stappia aggregata IAM 12614] Length = 247 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 134/247 (54%), Positives = 173/247 (70%), Gaps = 1/247 (0%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIP-ADLSISTWIVRTFGIFTILSIAPILLIMV 59 M R L LV A +P + S S I++ + T+LS+AP +LIMV Sbjct: 1 MSRLLVAGLVLVAMTGAAAAQVPDLSALLPAGEGSASGRIIQMIALLTVLSLAPGILIMV 60 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F RF+I FS LR+G+G+ + P NL++ISLALFMTFYVM+PT D++ E G+QPLMNN+I Sbjct: 61 TSFTRFVIAFSFLRSGIGLQTTPGNLILISLALFMTFYVMAPTFDKAWEQGVQPLMNNEI 120 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 +E A R+ PF FM + RE+DL LF D+A + + + ++ R+LIP+FMIS Sbjct: 121 SEEEAYVRITTPFRDFMLSQVREEDLVLFDDLAAGRVTDNEAASAEEVDLRVLIPAFMIS 180 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 ELRR FEIGFLI LPFL+IDMIVATI M+MGMMMLPPT ISLPFK +FFVLIDGW+LLV Sbjct: 181 ELRRGFEIGFLIALPFLVIDMIVATITMSMGMMMLPPTVISLPFKALFFVLIDGWNLLVG 240 Query: 240 NLVKSFI 246 +LV+SF+ Sbjct: 241 SLVRSFL 247 >gi|15887892|ref|NP_353573.1| flagellar biosynthesis protein FliP [Agrobacterium tumefaciens str. C58] gi|2494560|sp|Q44344|FLIP_AGRT5 RecName: Full=Flagellar biosynthetic protein fliP gi|1086567|gb|AAB68974.1| FliP [Agrobacterium tumefaciens] gi|2459720|gb|AAB71796.1| FliP [Agrobacterium tumefaciens] gi|15155484|gb|AAK86358.1| flagellar biosynthetic protein [Agrobacterium tumefaciens str. C58] Length = 245 Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats. Identities = 147/246 (59%), Positives = 193/246 (78%), Gaps = 3/246 (1%) Query: 1 MIRYCF-FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 MIR+ A+ L P L A+ D+ N D S++ WI+RTFG+ T+LS+AP +LIMV Sbjct: 1 MIRFLVTIAVLLALPGLANAQQFPSDLFNTQIDGSVAAWIIRTFGLLTVLSVAPGILIMV 60 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T FPRF+I FSILR+GMG+ S P N++++S+A+FMTFYVMSPT D++ G+QPL+ NQI Sbjct: 61 TSFPRFVIAFSILRSGMGLASTPSNMILLSMAMFMTFYVMSPTFDKAWTDGVQPLLQNQI 120 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 E A+QR+AEPF FM NTR+KDL LF+D+A R + ++ ++YR+L+P+FM+S Sbjct: 121 NEQQAVQRIAEPFRTFMNANTRDKDLKLFVDIAR--ERGQVVMTDNVVDYRVLVPAFMLS 178 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 E+RR FEIGFLIILPFL+ID+IVATI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV Sbjct: 179 EIRRGFEIGFLIILPFLVIDLIVATITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVG 238 Query: 240 NLVKSF 245 +LV+SF Sbjct: 239 SLVRSF 244 >gi|197285499|ref|YP_002151371.1| flagellar biosynthetic protein [Proteus mirabilis HI4320] gi|194682986|emb|CAR43419.1| flagellar biosynthetic protein [Proteus mirabilis HI4320] Length = 256 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 99/248 (39%), Positives = 152/248 (61%), Gaps = 7/248 (2%) Query: 1 MIRYCFFALFLVT---PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLI 57 + R+ FA L+ P FA+ +P + V+T T L P +L+ Sbjct: 11 LKRWPLFASVLILSLLPSHAFAQFPSVISHPLPGGGQSWSLPVQTLIFITALGFIPAVLL 70 Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 M+T F R IIV +LR +G S PPN V++ LALFMTF++M+P D+ + P + Sbjct: 71 MMTSFTRIIIVLGLLRNALGTPSAPPNQVVLGLALFMTFFIMAPVFDKIYQDAYLPFSED 130 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177 +IT A+ ++P FM TRE DL+LF +A + T D + RIL+P+++ Sbjct: 131 KITFEQALDNGSQPLRQFMMQQTRETDLALFARLADAPAFET----RDSVPMRILVPAYI 186 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 SEL+ +F+IGF+I +PFLIID++VA+++MA+GMMM+PP ++SLPFK++ FVL+DGW L+ Sbjct: 187 TSELKTAFQIGFMIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGWQLI 246 Query: 238 VENLVKSF 245 + +L +SF Sbjct: 247 LGSLAQSF 254 >gi|150395491|ref|YP_001325958.1| flagellar biosynthesis protein FliP [Sinorhizobium medicae WSM419] gi|150027006|gb|ABR59123.1| flagellar biosynthetic protein FliP [Sinorhizobium medicae WSM419] Length = 245 Score = 222 bits (565), Expect = 4e-56, Method: Composition-based stats. Identities = 140/247 (56%), Positives = 194/247 (78%), Gaps = 3/247 (1%) Query: 1 MIRY-CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 M+R+ F + + A+ D++N P D S+++WI+RTFG+ T+LS+AP +LIMV Sbjct: 1 MLRFATFIIAMMAMSGIAGAQGFPADILNTPVDGSVASWIIRTFGLLTVLSVAPGILIMV 60 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T FPRF+I F+ILR+GMG+ + P N++++SLALFMTFYVM+PT DR+ GI PL+ N+I Sbjct: 61 TSFPRFVIAFAILRSGMGLATTPSNMIMVSLALFMTFYVMAPTFDRAWRDGIDPLLKNEI 120 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 +ET A+QR++EPF FM NTR+KDL LF+D+A + + ++ ++ R ++P+FMIS Sbjct: 121 SETEAMQRMSEPFREFMLANTRDKDLQLFIDIAQ--EKGQTVVVDEKVDLRAVVPAFMIS 178 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 E+RR FEIGFLI+LPFL+ID+IVATI MAMGMMMLPPT+ISLPFK++FFVLIDGW+LLV Sbjct: 179 EIRRGFEIGFLIMLPFLVIDLIVATITMAMGMMMLPPTAISLPFKILFFVLIDGWNLLVG 238 Query: 240 NLVKSFI 246 +LV+SFI Sbjct: 239 SLVRSFI 245 >gi|15964421|ref|NP_384774.1| flagellar biosynthesis protein FliP [Sinorhizobium meliloti 1021] gi|307311563|ref|ZP_07591204.1| flagellar biosynthetic protein FliP [Sinorhizobium meliloti BL225C] gi|17380428|sp|P37827|FLIP_RHIME RecName: Full=Flagellar biosynthetic protein fliP gi|15073598|emb|CAC45240.1| Flagellar biosynthetic transmembrane protein [Sinorhizobium meliloti 1021] gi|306899580|gb|EFN30209.1| flagellar biosynthetic protein FliP [Sinorhizobium meliloti BL225C] Length = 245 Score = 222 bits (565), Expect = 5e-56, Method: Composition-based stats. Identities = 141/247 (57%), Positives = 195/247 (78%), Gaps = 3/247 (1%) Query: 1 MIRY-CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 M+R+ F + + A+S D++N P D S+++WI+RTFG+ T+LS+AP +LIMV Sbjct: 1 MLRFATFIIAMMAMSGIAGAQSFPADILNTPVDGSVASWIIRTFGLLTVLSVAPGILIMV 60 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T FPRF+I F+ILR+GMG+ + P N++++SLALFMTFYVM+PT DR+ GI PL+ N+I Sbjct: 61 TSFPRFVIAFAILRSGMGLATTPSNMIMVSLALFMTFYVMAPTFDRAWRDGIDPLLKNEI 120 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 +ET A+QR++EPF FM NTR+KDL LF+D+A + + ++ ++ R ++P+FMIS Sbjct: 121 SETDAMQRMSEPFREFMVANTRDKDLQLFIDIAR--EKGQTVVVDEKVDLRAVVPAFMIS 178 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 E+RR FEIGFLI+LPFL+ID+IVATI MAMGMMMLPPT+ISLPFK++FFVLIDGW+LLV Sbjct: 179 EIRRGFEIGFLIMLPFLVIDLIVATITMAMGMMMLPPTAISLPFKILFFVLIDGWNLLVG 238 Query: 240 NLVKSFI 246 +LV+SFI Sbjct: 239 SLVRSFI 245 >gi|291519582|emb|CBK74803.1| flagellar biosynthetic protein FliP [Butyrivibrio fibrisolvens 16/4] Length = 284 Score = 222 bits (565), Expect = 5e-56, Method: Composition-based stats. Identities = 93/215 (43%), Positives = 142/215 (66%), Gaps = 5/215 (2%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 + + +R + TIL+++P +LIM+T F R +IV +R +G + PPN V+I L Sbjct: 74 GEDGNFSSTLRMLLVLTILTLSPSILIMLTSFTRCVIVLHFVRAAIGTNTAPPNQVLIGL 133 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 ALF+T ++MSP L I P +IT+ AI P FM T+ KDL+LF D Sbjct: 134 ALFLTLFIMSPVLTTIKTEAIDPFDAGEITQQEAIDAAIAPVREFMYGQTQTKDLNLFCD 193 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 +A ++ + D + + +++P+F++SELR +F IGFLI +PF++IDM+VA+++M+MG Sbjct: 194 IAGITY-----EEYDEVPFTVVVPAFILSELRTAFIIGFLIYVPFIVIDMVVASVLMSMG 248 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMMLPPT+ISLPFK++ FVL+DGW L++ LVK+F Sbjct: 249 MMMLPPTTISLPFKILLFVLVDGWDLVIGGLVKTF 283 >gi|227820864|ref|YP_002824834.1| flagellar biosynthesis protein FliP [Sinorhizobium fredii NGR234] gi|227339863|gb|ACP24081.1| flagellar biosynthetic protein FliP [Sinorhizobium fredii NGR234] Length = 245 Score = 221 bits (564), Expect = 5e-56, Method: Composition-based stats. Identities = 139/240 (57%), Positives = 189/240 (78%), Gaps = 2/240 (0%) Query: 6 FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65 F + + A+S D++N P D S+++WI+RTFG+ T+LS+AP +LIMVT FPRF Sbjct: 7 FIVAMMAMSGIAGAQSFPADILNTPVDGSVASWIIRTFGLLTVLSVAPGILIMVTSFPRF 66 Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 +I F+ILR+GMG+ + P N++++SLALFMTFYVM+PT DR+ GI PL+ N+I+ET A+ Sbjct: 67 VIAFAILRSGMGLATTPSNMIMVSLALFMTFYVMAPTFDRAWREGIDPLLKNEISETEAL 126 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185 RV+EPF FM NTR+KDL LF+D+A + + +D ++ R ++P+FMISE+RR F Sbjct: 127 PRVSEPFREFMLANTRDKDLQLFIDIAR--EKGQTVVVDDKVDLRAVVPAFMISEIRRGF 184 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 EIGFLI+LPFL+ID+IV+TI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV +LV+SF Sbjct: 185 EIGFLIMLPFLVIDLIVSTITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVGSLVRSF 244 >gi|91776320|ref|YP_546076.1| flagellar biosynthesis protein FliP [Methylobacillus flagellatus KT] gi|91710307|gb|ABE50235.1| flagellar biosynthetic protein FliP [Methylobacillus flagellatus KT] Length = 250 Score = 221 bits (564), Expect = 6e-56, Method: Composition-based stats. Identities = 95/224 (42%), Positives = 139/224 (62%), Gaps = 4/224 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 L + P + ++T + T L+ P L+M+T F R IIV S+LR +G S Sbjct: 30 GLINSQPAPGGGQNYSLSIQTLILLTSLTFLPAALLMMTGFTRIIIVLSLLRQALGTQSS 89 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PPN V++ LALF+TF+VM P +R QP +IT A+ R + P FM TR Sbjct: 90 PPNQVLVGLALFLTFFVMGPVFERIYTEAYQPFDEERITMQEAMVRGSIPLKEFMLKQTR 149 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 E DL+LF M+ R + + + R+L+P+F+ SEL+ +F+IGF I +PFLIIDM+ Sbjct: 150 ESDLALFFKMS----RADAVATPEEVPLRVLVPAFVTSELKTAFQIGFAIFIPFLIIDMV 205 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 VA+I+M+MGMMM+ P ++LPFK++ FVL+DGW LL+ +L +SF Sbjct: 206 VASILMSMGMMMVSPAIVALPFKLMLFVLVDGWQLLLGSLAQSF 249 >gi|92116943|ref|YP_576672.1| flagellar biosynthesis protein FliP [Nitrobacter hamburgensis X14] gi|91799837|gb|ABE62212.1| flagellar biosynthetic protein FliP [Nitrobacter hamburgensis X14] Length = 251 Score = 221 bits (563), Expect = 6e-56, Method: Composition-based stats. Identities = 115/246 (46%), Positives = 168/246 (68%), Gaps = 7/246 (2%) Query: 3 RYCFFALFLVTPELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 R F L L+ + + D+ + + ++ ++ + T+LSIAP +LIM+ Sbjct: 8 RRVLFVLVLIAAGSLADPAFAQDISINLGGAGNGGVTERAIQLIALLTVLSIAPSILIMM 67 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R ++V S+LRT +G + PPN VII+LA+F+T +VM PTL +S + GI+PL+ NQI Sbjct: 68 TSFTRIVVVLSLLRTALGTATAPPNSVIIALAMFLTAFVMGPTLQKSYDDGIKPLVANQI 127 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 T A+QR + P FM+ N RE+DL LF+D++ T + RIL+P+FMIS Sbjct: 128 TVEEALQRASVPLRGFMQKNVREQDLKLFIDLSGEPPPATPA----DLSLRILMPAFMIS 183 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+R+FEIGFL+ LPFLIID++VA+++M+MGMMMLPP +SLPFK+IFFVL+DGWSL+ Sbjct: 184 ELKRAFEIGFLLFLPFLIIDLVVASVLMSMGMMMLPPVVVSLPFKLIFFVLVDGWSLVAG 243 Query: 240 NLVKSF 245 +LV+S+ Sbjct: 244 SLVQSY 249 >gi|134294170|ref|YP_001117905.1| flagellar biosynthesis protein FliP [Burkholderia vietnamiensis G4] gi|134137327|gb|ABO53070.1| flagellar biosynthetic protein FliP [Burkholderia vietnamiensis G4] Length = 253 Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats. Identities = 97/246 (39%), Positives = 155/246 (63%), Gaps = 7/246 (2%) Query: 3 RYCFFALFLVTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMV 59 R+ + + P L A+++ N P + + V+T + T+LS P +L+M+ Sbjct: 11 RFAPVLILGLFPALACAQAAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMLLMM 70 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R IIV S+LR +G + PPN V++ LA+F+TF+VMSP LD++ G +P + + Sbjct: 71 TSFTRIIIVLSLLRQALGTATTPPNQVLLGLAMFLTFFVMSPVLDKAYNDGYKPFSDGSL 130 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 A+QR PF FM TRE DL+LF ++ + + + + +L+P+F+ S Sbjct: 131 PMEQAVQRGVAPFKGFMLKQTRETDLALFAKIS----KAAPMQGPEDVPLSLLVPAFVTS 186 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+ F+IGF I +PFLIID++VA+++M+MGMMM+ P+++SLPFK++ FVL+DGW LL+ Sbjct: 187 ELKTGFQIGFTIFIPFLIIDLVVASVLMSMGMMMVSPSTVSLPFKLMLFVLVDGWQLLIG 246 Query: 240 NLVKSF 245 +L +SF Sbjct: 247 SLAQSF 252 >gi|240145488|ref|ZP_04744089.1| flagellar biosynthetic protein FliP [Roseburia intestinalis L1-82] gi|257202303|gb|EEV00588.1| flagellar biosynthetic protein FliP [Roseburia intestinalis L1-82] Length = 299 Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats. Identities = 98/230 (42%), Positives = 149/230 (64%), Gaps = 11/230 (4%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 ++I D + VR + TI++++P LLIM+T + R +IV LRT +G + PPN + Sbjct: 69 ISINNDEAGVASEVRALLLLTIIAVSPSLLIMLTSYTRIVIVLHFLRTAIGTQTAPPNQI 128 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 +I LALF+TF++M PT + E IQPL N IT A++ P FM + KD+ Sbjct: 129 LIGLALFLTFFIMWPTFQQINENAIQPLDNGDITIEEALKEAEVPIRQFMYGQVQRKDVK 188 Query: 147 LFMDMA-----------HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195 LF+DMA + + + D I I+IPSF+I ELR++F +GF+I +PF Sbjct: 189 LFVDMAGDSYDIDSAALEKEYEESGQSAYDAIPMTIMIPSFVIGELRQAFIMGFVIYIPF 248 Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++IDM+VA+++M+MGMMMLPPT+ISLPFK++ F+L DGW+L++ ++VK+F Sbjct: 249 IVIDMVVASVLMSMGMMMLPPTTISLPFKILLFILADGWNLVIGSVVKTF 298 >gi|115523568|ref|YP_780479.1| flagellar biosynthesis protein FliP [Rhodopseudomonas palustris BisA53] gi|115517515|gb|ABJ05499.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris BisA53] Length = 254 Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats. Identities = 114/244 (46%), Positives = 168/244 (68%), Gaps = 6/244 (2%) Query: 4 YCFFALFLVTPELVFAKSSLHDV-MNIPAD-LSISTWIVRTFGIFTILSIAPILLIMVTC 61 + L L + +S D+ +N+ + ++ ++ + T+LSIAP +LIM+T Sbjct: 11 FSLLLLILTAAGSLIDPASAQDISINLGGNTGGVTERAIQLIALLTVLSIAPSILIMMTS 70 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F R ++V S+LRT +G + PPN VI++LALF+T +VM P L +S + GI+PL+ NQIT Sbjct: 71 FTRIVVVLSLLRTALGTATAPPNAVILALALFLTGFVMGPVLQKSYDDGIKPLVANQITV 130 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 A +R +P FM+ N REKDL LF+D++ T D + RIL+P+FMISEL Sbjct: 131 EQAFERAVDPLRGFMQKNVREKDLKLFLDLSGEPPPAT----PDAMSLRILVPAFMISEL 186 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 +R+FEIGFL+ LPFL+ID++VA+++M+MGMMMLPP +SLPFK+IFFVL+DGWSL+ +L Sbjct: 187 KRAFEIGFLLFLPFLVIDLVVASVLMSMGMMMLPPVVVSLPFKLIFFVLVDGWSLVAGSL 246 Query: 242 VKSF 245 V+S+ Sbjct: 247 VQSY 250 >gi|92114088|ref|YP_574016.1| flagellar biosynthesis protein FliP [Chromohalobacter salexigens DSM 3043] gi|91797178|gb|ABE59317.1| flagellar biosynthetic protein FliP [Chromohalobacter salexigens DSM 3043] Length = 249 Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats. Identities = 105/246 (42%), Positives = 154/246 (62%), Gaps = 5/246 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSIS-TWIVRTFGIFTILSIAPILLIMV 59 M+R L L P + + V D + ++T + L+ P LL+ + Sbjct: 6 MLRCGLAVLLLAWPAFGWGQEISGIVSEPTGDGGQQWSLSLQTLLFLSSLAFLPALLLGM 65 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 TCF R IIV S+LRT +G S PPN V++ LALFMTF++MSP LDR E P +I Sbjct: 66 TCFTRIIIVLSLLRTAIGTQSTPPNQVLLGLALFMTFFIMSPVLDRVHEQAWVPFSEERI 125 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 + A+++ ++PF FM TRE DL+LF MA ++ + + R+LIP+F+ S Sbjct: 126 SLEQALEQGSQPFREFMFGQTRETDLALFARMAD----ADEMQGPEDVPMRLLIPAFLTS 181 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+ +F+IGF I +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ Sbjct: 182 ELKTAFQIGFSIFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLIG 241 Query: 240 NLVKSF 245 +L +SF Sbjct: 242 SLAESF 247 >gi|325291933|ref|YP_004277797.1| flagellar biosynthesis protein FliP [Agrobacterium sp. H13-3] gi|325059786|gb|ADY63477.1| flagellar biosynthesis protein FliP [Agrobacterium sp. H13-3] Length = 245 Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats. Identities = 146/246 (59%), Positives = 192/246 (78%), Gaps = 3/246 (1%) Query: 1 MIRYCF-FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 MIR+ A+ + P L A+ D+ N D S++ WI+RTFG+ T+LS+AP +LIMV Sbjct: 1 MIRFLVTIAVLVALPGLANAQQFPTDLFNTQIDGSVAAWIIRTFGLLTVLSVAPGILIMV 60 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T FPRF+I FSILR+GMG+ S P N++++S+A+FMTFYVMSPT D++ G+QPL+ NQI Sbjct: 61 TSFPRFVIAFSILRSGMGLASTPSNMILLSMAMFMTFYVMSPTFDKAWTDGVQPLLQNQI 120 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 E AI R+AEPF FM NTR+KDL LF+D+A R + ++ ++YR+L+P+FM+S Sbjct: 121 NEQQAIGRIAEPFRTFMNANTRDKDLKLFVDIAR--ERGQVVMTDNVVDYRVLVPAFMLS 178 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 E+RR FEIGFLIILPFL+ID+IVATI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV Sbjct: 179 EIRRGFEIGFLIILPFLVIDLIVATITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVG 238 Query: 240 NLVKSF 245 +LV+SF Sbjct: 239 SLVRSF 244 >gi|307731352|ref|YP_003908576.1| flagellar biosynthetic protein FliP [Burkholderia sp. CCGE1003] gi|307585887|gb|ADN59285.1| flagellar biosynthetic protein FliP [Burkholderia sp. CCGE1003] Length = 277 Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats. Identities = 103/246 (41%), Positives = 153/246 (62%), Gaps = 7/246 (2%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVT 60 AL L P L FA+++ N P + + V+T + T+LS P +++M+T Sbjct: 36 VALPALMLALPTLSFAQTAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMVLMMT 95 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R IIV S+LR +G + PPN V++ LALF+T +VMSP LD++ G +P + Sbjct: 96 SFTRIIIVLSLLRQALGTTTTPPNQVLVGLALFLTLFVMSPVLDKAYTDGYKPFSEGTVP 155 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 TA+ R PF FM TRE DL+LF ++H + + + +L+PSF+ SE Sbjct: 156 METAVSRGLAPFKTFMLRQTRESDLALFARISH----AAPMQGPEDVPLSLLVPSFVTSE 211 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ F+IGF I +PFLIIDM+VA+++M+MGMMM+ P +ISLPFK++ FVL+DGW LL+ + Sbjct: 212 LKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATISLPFKLMLFVLVDGWQLLLGS 271 Query: 241 LVKSFI 246 L +SF+ Sbjct: 272 LAQSFV 277 >gi|291536019|emb|CBL09131.1| flagellar biosynthetic protein FliP [Roseburia intestinalis M50/1] gi|291538511|emb|CBL11622.1| flagellar biosynthetic protein FliP [Roseburia intestinalis XB6B4] Length = 299 Score = 221 bits (563), Expect = 8e-56, Method: Composition-based stats. Identities = 98/230 (42%), Positives = 149/230 (64%), Gaps = 11/230 (4%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 ++I D + VR + TI++++P LLIM+T + R +IV LRT +G + PPN + Sbjct: 69 ISINNDEAGVASEVRALLLLTIIAVSPSLLIMLTSYTRIVIVLHFLRTAIGTQTAPPNQI 128 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 +I LALF+TF++M PT + E IQPL N IT A++ P FM + KD+ Sbjct: 129 LIGLALFLTFFIMWPTFQQINENAIQPLDNGDITIEEALKEAEVPIRQFMYGQVQRKDVK 188 Query: 147 LFMDMA-----------HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195 LF+DMA + + + D I I+IPSF+I ELR++F +GF+I +PF Sbjct: 189 LFVDMAGDSYDIDSAALEKEYEESGQSAYDAIPMTIMIPSFIIGELRQAFIMGFVIYIPF 248 Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++IDM+VA+++M+MGMMMLPPT+ISLPFK++ F+L DGW+L++ ++VK+F Sbjct: 249 IVIDMVVASVLMSMGMMMLPPTTISLPFKILLFILADGWNLVIGSVVKTF 298 >gi|78064698|ref|YP_367467.1| flagellar biosynthesis protein FliP [Burkholderia sp. 383] gi|77965443|gb|ABB06823.1| Flagellar transport protein FliP [Burkholderia sp. 383] Length = 253 Score = 221 bits (562), Expect = 9e-56, Method: Composition-based stats. Identities = 99/246 (40%), Positives = 156/246 (63%), Gaps = 7/246 (2%) Query: 3 RYCFFALFLVTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMV 59 R+ + + P L FA+++ N P + + V+T + T+LS P +L+M+ Sbjct: 11 RFAPVLILCLAPALAFAQANGLPAFNASPGPHGGTTYSLSVQTMLLLTMLSFLPAMLLMM 70 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R IIV S+LR +G + PPN V++ LA+F+TF+VMSP LDR+ G +P + + Sbjct: 71 TSFTRIIIVLSLLRQALGTATTPPNQVLVGLAMFLTFFVMSPVLDRAYNDGYKPFSDGSM 130 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 A+QR PF FM TRE DL+LF ++ + + + + +L+P+F+ S Sbjct: 131 PMEQAVQRGVAPFKTFMLKQTRETDLALFAKIS----KAAPMQGPEDVPLSLLVPAFVTS 186 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+ F+IGF + +PFLIIDM+VA+++M+MGMMM+ P+++SLPFK++ FVL+DGW LL+ Sbjct: 187 ELKTGFQIGFTVFIPFLIIDMVVASVLMSMGMMMVSPSTVSLPFKLMLFVLVDGWQLLIG 246 Query: 240 NLVKSF 245 +L +SF Sbjct: 247 SLAQSF 252 >gi|206561840|ref|YP_002232605.1| flagellar biosynthesis protein FliP [Burkholderia cenocepacia J2315] gi|198037882|emb|CAR53826.1| flagellar biosynthetic protein FliP precursor [Burkholderia cenocepacia J2315] Length = 253 Score = 221 bits (562), Expect = 9e-56, Method: Composition-based stats. Identities = 99/246 (40%), Positives = 155/246 (63%), Gaps = 7/246 (2%) Query: 3 RYCFFALFLVTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMV 59 R + + P L +A+++ N P + + V+T + T+LS P +L+M+ Sbjct: 11 RVAPVLILCLAPALAYAQANGLPAFNASPGPHGGTTYSLSVQTMLLLTMLSFLPAMLLMM 70 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R IIV S+LR +G + PPN V++ LA+F+TF+VMSP LDR+ G +P + + Sbjct: 71 TSFTRIIIVLSLLRQALGTATTPPNQVLVGLAMFLTFFVMSPVLDRAYNDGYKPFSDGSM 130 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 A+QR PF FM TRE DL+LF ++ + + D + +L+P+F+ S Sbjct: 131 PMEQAVQRGVAPFKTFMLKQTRETDLALFAKIS----KAAPMQGPDDVPLSLLVPAFVTS 186 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+ F+IGF + +PFLIIDM+VA+++M+MGMMM+ P+++SLPFK++ FVL+DGW LL+ Sbjct: 187 ELKTGFQIGFTVFIPFLIIDMVVASVLMSMGMMMVSPSTVSLPFKLMLFVLVDGWQLLIG 246 Query: 240 NLVKSF 245 +L +SF Sbjct: 247 SLAQSF 252 >gi|253682024|ref|ZP_04862821.1| flagellar biosynthetic protein FliP [Clostridium botulinum D str. 1873] gi|253561736|gb|EES91188.1| flagellar biosynthetic protein FliP [Clostridium botulinum D str. 1873] Length = 257 Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 92/248 (37%), Positives = 151/248 (60%), Gaps = 9/248 (3%) Query: 4 YCFFALFLVTPELVFAKSS------LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLI 57 FAL ++ +A ++ ++ + ++ + T+LS+ P L+ Sbjct: 11 LVIFALVILGATKAYAAPDTIPVPKVNISVDKATNPKDYVDNIKLLVMLTVLSLLPSFLV 70 Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 M+T F R IIV +R +G PPN ++I +ALF+T ++M+PT + I+P + N Sbjct: 71 MMTSFTRIIIVLGFMRNALGTQQAPPNQILIGIALFLTIFIMAPTYKTINKEAIKPFIEN 130 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177 +IT AI ++P FM TR+KDL LF+D++ + D++ ++IPSF+ Sbjct: 131 KITGQQAIDNASKPMREFMLKQTRDKDLELFLDISKTDKAKI---TKDNVPMYVVIPSFI 187 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 ISEL+ +F+IGFL+ +PFLIID++VA+++M+MGM MLPP ISLPFK++ FV++DGW LL Sbjct: 188 ISELKTAFKIGFLLYIPFLIIDIVVASVLMSMGMFMLPPVMISLPFKILLFVMVDGWYLL 247 Query: 238 VENLVKSF 245 V++L+ + Sbjct: 248 VKSLIMGY 255 >gi|27380927|ref|NP_772456.1| flagellar biosynthesis protein FliP [Bradyrhizobium japonicum USDA 110] gi|27354093|dbj|BAC51081.1| flagellar biosynthetic protein [Bradyrhizobium japonicum USDA 110] Length = 250 Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 118/244 (48%), Positives = 167/244 (68%), Gaps = 5/244 (2%) Query: 3 RYCFFALFLVTPELV-FAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61 R F ++ + L A + + ++ ++ + T+LSIAP +LIM+T Sbjct: 9 RVLFLSVLIGAASLAGLAHAQDISINLGGQGGGVTERAIQLIALLTVLSIAPSILIMMTS 68 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F R ++V S+LRT MG + PPN VII+LA+F+TF+VM P L +S + GI+PL+ NQI Sbjct: 69 FTRIVVVLSLLRTAMGTATAPPNSVIIALAMFLTFFVMGPVLQKSYDEGIRPLVANQIGV 128 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 A+QR + P FM+ N REKDL LF+D++ T D + RILIP+FMISEL Sbjct: 129 EDALQRASVPLRGFMQKNVREKDLKLFLDLSGEPPPAT----PDELALRILIPAFMISEL 184 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 +R+FEIGFL+ LPFLIID++VA+++M+MGMMMLPP +ISLPFK+IFFVL+DGWSL+ +L Sbjct: 185 KRAFEIGFLLFLPFLIIDLVVASVLMSMGMMMLPPATISLPFKLIFFVLVDGWSLVAGSL 244 Query: 242 VKSF 245 V+S+ Sbjct: 245 VQSY 248 >gi|107021595|ref|YP_619922.1| flagellar biosynthesis protein FliP [Burkholderia cenocepacia AU 1054] gi|116688061|ref|YP_833684.1| flagellar biosynthesis protein FliP [Burkholderia cenocepacia HI2424] gi|170731411|ref|YP_001763358.1| flagellar biosynthesis protein FliP [Burkholderia cenocepacia MC0-3] gi|254246638|ref|ZP_04939959.1| Flagellar biosynthesis pathway, component FliP [Burkholderia cenocepacia PC184] gi|105891784|gb|ABF74949.1| flagellar biosynthetic protein FliP [Burkholderia cenocepacia AU 1054] gi|116646150|gb|ABK06791.1| flagellar biosynthetic protein FliP [Burkholderia cenocepacia HI2424] gi|124871414|gb|EAY63130.1| Flagellar biosynthesis pathway, component FliP [Burkholderia cenocepacia PC184] gi|169814653|gb|ACA89236.1| flagellar biosynthetic protein FliP [Burkholderia cenocepacia MC0-3] Length = 253 Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 98/246 (39%), Positives = 155/246 (63%), Gaps = 7/246 (2%) Query: 3 RYCFFALFLVTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMV 59 R + + P L +A+++ N P + + V+T + T+LS P +L+M+ Sbjct: 11 RVAPVLILCLAPALAYAQANGLPAFNASPGPHGGTTYSLSVQTMLLLTMLSFLPAMLLMM 70 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R IIV S+LR +G + PPN V++ LA+F+TF+VMSP LDR+ G +P + + Sbjct: 71 TSFTRIIIVLSLLRQALGTATTPPNQVLVGLAMFLTFFVMSPVLDRAYNDGYKPFSDGSM 130 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 A+QR PF FM TRE DL+LF ++ + + + + +L+P+F+ S Sbjct: 131 PMEQAVQRGVAPFKTFMLKQTRETDLALFAKIS----KAAPMQGPEDVPLSLLVPAFVTS 186 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+ F+IGF + +PFLIIDM+VA+++M+MGMMM+ P+++SLPFK++ FVL+DGW LL+ Sbjct: 187 ELKTGFQIGFTVFIPFLIIDMVVASVLMSMGMMMVSPSTVSLPFKLMLFVLVDGWQLLIG 246 Query: 240 NLVKSF 245 +L +SF Sbjct: 247 SLAQSF 252 >gi|114765260|ref|ZP_01444392.1| flagellar biosynthesis protein P [Pelagibaca bermudensis HTCC2601] gi|114542395|gb|EAU45423.1| flagellar biosynthesis protein P [Roseovarius sp. HTCC2601] Length = 282 Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 117/221 (52%), Positives = 161/221 (72%), Gaps = 7/221 (3%) Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92 ++S I++ T+LS+AP LL+++T F RF+IVFS+LR+ +G+ PPN+V+ S+AL Sbjct: 56 ATLSGRIIQLIAAMTVLSLAPGLLVIMTSFTRFVIVFSMLRSALGLNQSPPNMVLTSMAL 115 Query: 93 FMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152 FMTF+VM P + + E G+QPLM N ITE A+ RV EPF +FM NTREKDL+LF D+A Sbjct: 116 FMTFFVMQPVFEDAWEGGVQPLMANSITEEQALMRVGEPFKLFMYANTREKDLALFRDIA 175 Query: 153 HSSHRNTDITK-------NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205 S + + + +R L+P+FMISELRR+F IGFLI LPFL+ID+IVA++ Sbjct: 176 ARSEGTVPPEESAPAPQSAEDVGWRELVPAFMISELRRAFSIGFLIYLPFLVIDLIVASV 235 Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +M+ GMMMLPP ISLPFKVIFFVLIDGW +L +L++S++ Sbjct: 236 LMSAGMMMLPPVLISLPFKVIFFVLIDGWYMLAGSLMESYL 276 >gi|209884533|ref|YP_002288390.1| flagellar biosynthetic protein FliP [Oligotropha carboxidovorans OM5] gi|209872729|gb|ACI92525.1| flagellar biosynthetic protein FliP [Oligotropha carboxidovorans OM5] Length = 253 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 107/245 (43%), Positives = 166/245 (67%), Gaps = 6/245 (2%) Query: 3 RYCFFALFLVTPELVFAKSSLHDVMNIPA--DLSISTWIVRTFGIFTILSIAPILLIMVT 60 R F ++ + L A ++ +N + ++ ++ + T+LSIAP +L+M+T Sbjct: 9 RVLFLSVLIAAATLATAAAAQDISINFGGQGNGGVTERAIQLIALLTVLSIAPSILVMMT 68 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R ++V S+LRT +G + PPN V+I+LALF+T +VM P L +S + G++P++ N+++ Sbjct: 69 SFTRIVVVLSLLRTALGTATAPPNSVMIALALFLTGFVMGPVLQKSYDEGVKPVIANELS 128 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 +R P FM+ N REKDL LFMD++ T + + RILIP+FMISE Sbjct: 129 VEQGFERAVGPLRGFMQKNVREKDLKLFMDLSGEPPPAT----PEEMSLRILIPAFMISE 184 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+R+FEIGFL+ LPFLIID++V++++M+MGMMMLPP +SLPFK+IFFVL+DGW+L+ + Sbjct: 185 LKRAFEIGFLLFLPFLIIDLVVSSVLMSMGMMMLPPVVVSLPFKLIFFVLVDGWALVAGS 244 Query: 241 LVKSF 245 LV+S+ Sbjct: 245 LVQSY 249 >gi|271500076|ref|YP_003333101.1| flagellar biosynthetic protein FliP [Dickeya dadantii Ech586] gi|270343631|gb|ACZ76396.1| flagellar biosynthetic protein FliP [Dickeya dadantii Ech586] Length = 258 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 97/245 (39%), Positives = 155/245 (63%), Gaps = 4/245 (1%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 ++RY ++ L+ A+ +P + V+T T LS P +L+M+T Sbjct: 16 LLRYPAASMLLLIAPHALAQLPSIISHPLPNGGQSWSLPVQTLIFITALSFIPAVLLMMT 75 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 CF R IIV S+LR +G + PPN V++ L+LF+TF+VMSP L+R + +P ++I+ Sbjct: 76 CFTRIIIVLSLLRNALGTPTAPPNQVLLGLSLFLTFFVMSPVLNRIYDEAYRPFSEDKIS 135 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 AI + ++P FM TRE DL+LF +A + + + R+L+P+++ SE Sbjct: 136 MEVAIDKGSKPLREFMLRQTREADLALFTRLAQIP----SLQGPEAVPMRVLVPAYVTSE 191 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +F+IGF I +PFL+ID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ + Sbjct: 192 LKTAFQIGFTIFIPFLLIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGS 251 Query: 241 LVKSF 245 L +SF Sbjct: 252 LAQSF 256 >gi|167770202|ref|ZP_02442255.1| hypothetical protein ANACOL_01545 [Anaerotruncus colihominis DSM 17241] gi|167667524|gb|EDS11654.1| hypothetical protein ANACOL_01545 [Anaerotruncus colihominis DSM 17241] Length = 270 Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats. Identities = 93/243 (38%), Positives = 143/243 (58%), Gaps = 4/243 (1%) Query: 7 FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66 L + A + + + ++ + T+L++AP +LIM+T F R I Sbjct: 27 LLLLVCCTITAHAAPMVTVDLGSGDASGNAFGLIDMLFVVTLLALAPSILIMMTSFTRII 86 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IV S LR +G+ PPN V+I LALF+T ++M P +++ E QP QIT+ A+ Sbjct: 87 IVLSFLRNALGIQQTPPNQVLIGLALFLTLFIMFPVINQINEEAYQPYRQGQITQEEAVT 146 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD----ITKNDHIEYRILIPSFMISELR 182 R P FM TR D++LF+ +A+ + I+IP+F+ SEL+ Sbjct: 147 RGIRPLKEFMIRQTRTDDVNLFLSIANDKRPPEQAITIPEDLTELGMEIVIPAFITSELK 206 Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242 ++F IGFL+ +PFLIIDM+V++ +M+MGM+MLPP+ ISLPFK++ FV++DGW LL+ NLV Sbjct: 207 QAFMIGFLLFIPFLIIDMVVSSTLMSMGMVMLPPSMISLPFKIMMFVMVDGWGLLLGNLV 266 Query: 243 KSF 245 + F Sbjct: 267 RGF 269 >gi|148256782|ref|YP_001241367.1| flagellar biosynthesis protein FliP [Bradyrhizobium sp. BTAi1] gi|146408955|gb|ABQ37461.1| Flagellar transport protein FliP [Bradyrhizobium sp. BTAi1] Length = 234 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 113/216 (52%), Positives = 159/216 (73%), Gaps = 4/216 (1%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P + ++ V+ + T+LSIAP +LIM+T F R ++V S+LRT MG + PPN VII+ Sbjct: 21 PGNGGVTERAVQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLRTAMGTATAPPNAVIIA 80 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 LA+F+T +VM P L +S + G++PL+ NQI A+QR + P FM+ N REKDL LFM Sbjct: 81 LAMFLTAFVMGPVLQKSYDDGVRPLIENQIGVEDALQRASVPLRGFMQKNVREKDLKLFM 140 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 D++ + T D + RIL+P+FMISEL+R+FEIGFL+ LPFLIID++VA+++M+M Sbjct: 141 DLSGEAPPAT----PDELSLRILVPAFMISELKRAFEIGFLLFLPFLIIDLVVASVLMSM 196 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMMLPP +SLPFK+IFFVL+DGWSL+ +LV+S+ Sbjct: 197 GMMMLPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY 232 >gi|226327730|ref|ZP_03803248.1| hypothetical protein PROPEN_01603 [Proteus penneri ATCC 35198] gi|225203434|gb|EEG85788.1| hypothetical protein PROPEN_01603 [Proteus penneri ATCC 35198] Length = 256 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 96/242 (39%), Positives = 150/242 (61%), Gaps = 4/242 (1%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63 + + L+ P FA+ +P + V+T T L P +L+M+T F Sbjct: 17 FASVLVLLLLPTSAFAQFPGIITQPLPGGGQSWSLPVQTLIFITALGFIPAVLLMMTSFT 76 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 R IIV +LR +G S PPN V++ LALFMTF++M+P D+ + P +QIT Sbjct: 77 RIIIVLGLLRNALGTPSAPPNQVVLGLALFMTFFIMAPVFDKIYQDAYMPFTEDQITFEQ 136 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 A++ ++P FM TRE DL+LF +A + T + + RIL+P+++ SEL+ Sbjct: 137 ALENGSKPLRQFMMQQTRETDLALFARLADAPAFET----RESVPMRILVPAYITSELKT 192 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 +F+IGF+I +PFLIID++VA+++MA+GMMM+PP ++SLPFK++ FVL+DGW L++ +L + Sbjct: 193 AFQIGFMIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGWQLILGSLAQ 252 Query: 244 SF 245 SF Sbjct: 253 SF 254 >gi|170698077|ref|ZP_02889158.1| flagellar biosynthetic protein FliP [Burkholderia ambifaria IOP40-10] gi|170137038|gb|EDT05285.1| flagellar biosynthetic protein FliP [Burkholderia ambifaria IOP40-10] Length = 253 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 98/246 (39%), Positives = 155/246 (63%), Gaps = 7/246 (2%) Query: 3 RYCFFALFLVTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMV 59 R+ + + P L A+++ N P + + V+T + T+LS P +L+M+ Sbjct: 11 RFAPVLILGLVPALACAQAAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMLLMM 70 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R IIV S+LR +G + PPN V++ LA+F+TF+VMSP LDR+ G +P + + Sbjct: 71 TSFTRIIIVLSLLRQALGTATTPPNQVLVGLAMFLTFFVMSPVLDRAYADGYKPFSDGSM 130 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 A++R PF FM TRE DL+LF ++ + + + + +L+P+F+ S Sbjct: 131 PMEQAVRRGVAPFKTFMLKQTRETDLALFAKIS----KAAPMQGPEDVPLSLLVPAFVTS 186 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+ F+IGF I +PFLIIDM+VA+++M+MGMMM+ P+++SLPFK++ FVL+DGW LL+ Sbjct: 187 ELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPSTVSLPFKLMLFVLVDGWQLLIG 246 Query: 240 NLVKSF 245 +L +SF Sbjct: 247 SLAQSF 252 >gi|167645329|ref|YP_001682992.1| flagellar biosynthesis protein FliP [Caulobacter sp. K31] gi|167347759|gb|ABZ70494.1| flagellar biosynthetic protein FliP [Caulobacter sp. K31] Length = 266 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 104/245 (42%), Positives = 164/245 (66%), Gaps = 6/245 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 +I + ++ P + A+S+++ +++ +S +V+ G+ T+LS+AP ++IM T Sbjct: 21 IISVLAGLITVLGPAVAVAQSAIN--VDLGTGAGLSERVVQMVGLLTVLSLAPSIVIMTT 78 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R ++V +LRT +G+ PPN VIISLALF+T VM PT ++S + GI+PL++ QI Sbjct: 79 SFVRIVVVLGLLRTAIGVQQSPPNPVIISLALFLTAIVMGPTFEKSYDDGIKPLLDKQIE 138 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A A P VFM + DL+LF+ ++ T + +++ P+FMISE Sbjct: 139 MPEAFDAAAAPVKVFMLRQVDQDDLALFIRLSKIEKPKTAV----DTPLKVVTPAFMISE 194 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+R+FEIGFL+ +PFL+ID++VA+++M+MGMMMLPP ++SLPFK+IFFVL+DGW L+ + Sbjct: 195 LKRAFEIGFLLFIPFLVIDLVVASVLMSMGMMMLPPATVSLPFKLIFFVLVDGWRLVAGS 254 Query: 241 LVKSF 245 LV+SF Sbjct: 255 LVESF 259 >gi|323341374|ref|ZP_08081618.1| flagellar biosynthetic protein FliP [Lactobacillus ruminis ATCC 25644] gi|323091251|gb|EFZ33879.1| flagellar biosynthetic protein FliP [Lactobacillus ruminis ATCC 25644] Length = 268 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 104/254 (40%), Positives = 149/254 (58%), Gaps = 9/254 (3%) Query: 1 MIRYCFFALFLVTPELV--FAKSSLHDVMNI------PADLSISTWIVRTFGIFTILSIA 52 ++ + A FL+ L A S DV N D S+ IV TF I T+LSI Sbjct: 14 LVLFGMMACFLIAVRLPDHVAAVSTSDVTNTVNKLINGNDQGSSSKIVDTFVIMTLLSII 73 Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P++LIM T F R I+V S +R+ +G PPN V+I LALF+T + M P + IQ Sbjct: 74 PLILIMTTSFTRIIVVLSFVRSSLGTQQNPPNQVLIGLALFLTLFTMRPVYNDIYHNAIQ 133 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM-AHSSHRNTDITKNDHIEYRI 171 P N+IT+ R FM +KD+ LF D+ + + I + + Sbjct: 134 PYNENKITQQEVFDRSENRMKEFMYKQANKKDVKLFKDLDQKNERKKIKYRTYKDIPFTV 193 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 + P+F++SEL+ +F IGFL+ +PF+IID++VA+I+M+MGM+ML P ISLPFK++ FVL+ Sbjct: 194 MAPAFILSELKTAFSIGFLLFIPFMIIDLVVASILMSMGMIMLSPIMISLPFKILLFVLV 253 Query: 232 DGWSLLVENLVKSF 245 DGW LLVE+LV+SF Sbjct: 254 DGWYLLVESLVQSF 267 >gi|85716540|ref|ZP_01047510.1| flagellar biosynthesis protein [Nitrobacter sp. Nb-311A] gi|85696541|gb|EAQ34429.1| flagellar biosynthesis protein [Nitrobacter sp. Nb-311A] Length = 251 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 114/245 (46%), Positives = 166/245 (67%), Gaps = 6/245 (2%) Query: 3 RYCFFALFLVTPELVFAKSSLHDVMNIPADL--SISTWIVRTFGIFTILSIAPILLIMVT 60 R F + + L + +N+ +S ++ + T+LSIAP +LIM+T Sbjct: 9 RVSFIVVLIAAGSLADPAFAQDISINLGGAGTSGVSERAIQLIALLTVLSIAPSILIMMT 68 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R ++V S+LRT +G + PPN VII+LA+F+T +VM PTL +S + GI+PL+ N+IT Sbjct: 69 SFTRIVVVLSLLRTALGTATAPPNSVIIALAVFLTAFVMGPTLQKSYDDGIKPLVANEIT 128 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A+QR + P FM+ N RE+DL LFMD++ T + RIL+P+FMISE Sbjct: 129 VEEALQRASVPLRGFMQKNVREQDLKLFMDLSGEPPPKTPA----ELSLRILMPAFMISE 184 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+R+FEIGFL+ LPFLIID++VA+++M+MGMMMLPP +SLPFK+IFFVL+DGW+L+ + Sbjct: 185 LKRAFEIGFLLFLPFLIIDLVVASVLMSMGMMMLPPVVVSLPFKLIFFVLVDGWALVAGS 244 Query: 241 LVKSF 245 LV+S+ Sbjct: 245 LVQSY 249 >gi|163744333|ref|ZP_02151693.1| flagellar biosynthetic protein FliP [Oceanibulbus indolifex HEL-45] gi|161381151|gb|EDQ05560.1| flagellar biosynthetic protein FliP [Oceanibulbus indolifex HEL-45] Length = 278 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 109/225 (48%), Positives = 157/225 (69%), Gaps = 3/225 (1%) Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84 + ++S IV+ + T+LSIAP LL+++T F RF+IV S+LR+ +G+ PPN Sbjct: 49 SAPGSDENANLSGRIVQFIALMTVLSIAPGLLVVMTSFTRFVIVLSMLRSALGLNQTPPN 108 Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144 +V+ SLALFMTF+VM P + + E G+QPL+ N I E A++R+A PF FM NTR +D Sbjct: 109 IVLTSLALFMTFFVMQPVFEDAYEAGVQPLLENAIAEEQALERIAAPFKSFMYVNTRPED 168 Query: 145 LSLFMDMAHSSHRNTD---ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 +LF+ +A + + + +R L+P+FMISELRR+F IGFLI LPF+ ID+I Sbjct: 169 YALFLRIAPADEEAEETPLPASAEEATFRHLVPAFMISELRRAFTIGFLIYLPFVAIDLI 228 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +A+++M+ GMMMLPP ISLPFKVIFFVLIDGW +L +L++S++ Sbjct: 229 IASVLMSAGMMMLPPVLISLPFKVIFFVLIDGWYMLAGSLIESYV 273 >gi|307701549|ref|ZP_07638566.1| flagellar biosynthetic protein FliP [Mobiluncus mulieris FB024-16] gi|307613228|gb|EFN92480.1| flagellar biosynthetic protein FliP [Mobiluncus mulieris FB024-16] Length = 462 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 81/209 (38%), Positives = 133/209 (63%), Gaps = 4/209 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 T V F + T+LS+AP LL+M+T F + IV ++ R +G+ +PP V+ LA+F++ Sbjct: 257 TTTVLVFLLITVLSVAPSLLLMMTSFTKIFIVLAMARNALGLNQIPPTQVLSGLAIFLSL 316 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 ++M+PT++ +QPL + +I + +PF FM TRE+D++L A+ + Sbjct: 317 FIMAPTVNTLWTDVVQPLTDGKIEVQEVFKLGEKPFRDFMGPLTREEDIALMTRAANRPN 376 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 D + L+P+FMISE+R +F IGF++ +PFL+ID++V +M+MGMMMLPP Sbjct: 377 PE----SLDKTPFTTLVPAFMISEVRSAFIIGFVVFIPFLVIDLVVGAALMSMGMMMLPP 432 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +SLPFKV+ FV++DGW +L + L+ ++ Sbjct: 433 VMVSLPFKVLLFVMVDGWGMLTQTLIGTY 461 >gi|288962691|ref|YP_003452985.1| flagellar biosynthetic protein [Azospirillum sp. B510] gi|288914957|dbj|BAI76441.1| flagellar biosynthetic protein [Azospirillum sp. B510] Length = 279 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 107/234 (45%), Positives = 165/234 (70%), Gaps = 11/234 (4%) Query: 23 LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82 L + ++ S+S IV+ + T+LS+AP LLIMVTCF R I+V S+LR+ +G+ P Sbjct: 44 LGALGSLADGASLSGRIVQGIVLLTVLSVAPGLLIMVTCFTRIIVVLSLLRSALGLQQSP 103 Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142 PN+V++SLA+F+TF++M P +D + + G++PL+N Q+T+ ++R+ EPF FM ++ RE Sbjct: 104 PNMVLVSLAMFLTFHIMGPVIDSAWQDGLRPLLNEQVTQEQGLERMIEPFRGFMASHVRE 163 Query: 143 KDLSLFM-----------DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191 +DL+ F + A ++ + ++ R+L+P+F++SELRR+FEIGFL+ Sbjct: 164 RDLAAFAAFTAKPKPAGEEAAQPPEKDGRPVTAESVDLRLLMPAFLLSELRRAFEIGFLL 223 Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LPFL+IDM+VA I+MAMGMMMLPP I+LPFK+IFFVL DGW L+ +L++S+ Sbjct: 224 FLPFLVIDMVVAAILMAMGMMMLPPVMIALPFKIIFFVLTDGWFLIAGSLIRSY 277 >gi|331269328|ref|YP_004395820.1| flagellar biosynthetic protein FliP [Clostridium botulinum BKT015925] gi|329125878|gb|AEB75823.1| flagellar biosynthetic protein FliP [Clostridium botulinum BKT015925] Length = 257 Score = 219 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 91/248 (36%), Positives = 151/248 (60%), Gaps = 9/248 (3%) Query: 4 YCFFALFLVTPELVFAKSS------LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLI 57 FAL ++ +A ++ ++ + ++ + T+LS+ P L+ Sbjct: 11 LIVFALVILGATKAYAAPDTIPVPKVNISVDKATNPKDYVDNIKLLVMLTVLSLLPSFLV 70 Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 M+T F R IIV +R +G PPN ++I +ALF+T ++M+PT + I+P + N Sbjct: 71 MMTSFTRIIIVLGFMRNALGTQQAPPNQILIGIALFLTIFIMAPTYKTINKEAIKPFLEN 130 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177 +IT A+ ++P FM TR+KDL LF+D++ + D++ ++IPSF+ Sbjct: 131 KITGQQAMDNASKPMREFMLKQTRDKDLELFLDVSKTDKTKI---TKDNVPMYVVIPSFI 187 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 ISEL+ +F+IGFL+ +PFLIID++VA+++M+MGM MLPP ISLPFK++ FV++DGW LL Sbjct: 188 ISELKTAFKIGFLLYIPFLIIDIVVASVLMSMGMFMLPPVMISLPFKILLFVMVDGWYLL 247 Query: 238 VENLVKSF 245 V++L+ + Sbjct: 248 VKSLIMGY 255 >gi|331663444|ref|ZP_08364354.1| flagellar biosynthetic protein FliP [Escherichia coli TA143] gi|331059243|gb|EGI31220.1| flagellar biosynthetic protein FliP [Escherichia coli TA143] Length = 249 Score = 219 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 100/247 (40%), Positives = 154/247 (62%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 M R A L+ A + L + + P +W V+T T L+ P +L+M Sbjct: 1 MRRLLSVAPVLLWLVTPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP + Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ A+++ A+P FM TRE DL LF +A++ + + + RIL+P+++ Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVT 176 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236 Query: 239 ENLVKSF 245 +L +SF Sbjct: 237 GSLAQSF 243 >gi|319944172|ref|ZP_08018448.1| flagellar biosynthetic protein FliP [Lautropia mirabilis ATCC 51599] gi|319742467|gb|EFV94878.1| flagellar biosynthetic protein FliP [Lautropia mirabilis ATCC 51599] Length = 245 Score = 219 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 96/239 (40%), Positives = 152/239 (63%), Gaps = 1/239 (0%) Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSIS-TWIVRTFGIFTILSIAPILLIMVTCFPRFI 66 AL P V+A+++L AD + + V+T F+ LS P +L+++T F R I Sbjct: 5 ALLAGAPLDVWAQATLSLQSTAAADGGTTWSVPVQTLLFFSALSFIPAVLLLMTSFTRII 64 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IV S+LR +G+ + PPN V++ ++LF+T ++MSPTLDR QPL +I TA+Q Sbjct: 65 IVLSLLRQALGLQASPPNQVLVGISLFLTAFIMSPTLDRIYTEAYQPLAEKRIDFETALQ 124 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 + + P FM TR DL LF +A + + ++ ++P+F+ISEL+ +F+ Sbjct: 125 KGSVPLRDFMLKQTRASDLELFARLARVKAPDDKPLSAQDMPFKAIVPAFVISELKTAFQ 184 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGF+I +PF++ID+I A+++M++GMMM+ P ++LPFK++ FVL DGW+LLV +LV SF Sbjct: 185 IGFMIFIPFILIDLICASVLMSLGMMMVSPVLVALPFKLVLFVLADGWNLLVGSLVASF 243 >gi|260466613|ref|ZP_05812801.1| flagellar biosynthetic protein FliP [Mesorhizobium opportunistum WSM2075] gi|259029619|gb|EEW30907.1| flagellar biosynthetic protein FliP [Mesorhizobium opportunistum WSM2075] Length = 243 Score = 219 bits (557), Expect = 4e-55, Method: Composition-based stats. Identities = 131/245 (53%), Positives = 178/245 (72%), Gaps = 3/245 (1%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 M ++ A + + A L AD + +I++ FG+ T+LS+AP LLIMVT Sbjct: 1 MRKFLLAAALIGATTSIAAAQQLDLGGIGKADGTTVGYIIQMFGLLTVLSVAPGLLIMVT 60 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F RF+I FSILR G+G+ S P NL++ISL+LFMTFYVM+PT D++ G++PLM+NQI+ Sbjct: 61 SFTRFVIAFSILRAGIGLQSTPANLILISLSLFMTFYVMAPTFDQAWNTGVKPLMDNQIS 120 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 +T A ++++PF FM +N R+KD LF D+A + D ++ RIL+P+FMISE Sbjct: 121 QTEAFDKISDPFRTFMLHNVRDKDFDLFADLARERGQT---VSRDTVDLRILVPAFMISE 177 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 +RR FEIGFLI+LPFL+ID+IVATI MAMGMMMLPPT +SLPFK++FFVLIDGW+LLV + Sbjct: 178 IRRGFEIGFLIVLPFLVIDLIVATITMAMGMMMLPPTVVSLPFKILFFVLIDGWNLLVGS 237 Query: 241 LVKSF 245 LV+SF Sbjct: 238 LVRSF 242 >gi|254559215|ref|YP_003066310.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens DM4] gi|254266493|emb|CAX22257.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens DM4] Length = 260 Score = 219 bits (557), Expect = 4e-55, Method: Composition-based stats. Identities = 122/221 (55%), Positives = 162/221 (73%), Gaps = 2/221 (0%) Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84 D + P + + S I++ + T+LS+AP LL+MVT F RF + S LR+G+G+ S P N Sbjct: 41 DALLPPGNGAASGRIIQLVALLTVLSLAPGLLVMVTSFTRFAVALSFLRSGLGLQSTPAN 100 Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144 L ++SLALFMTFYVM+PT DR+ G++PL N+I+E A ++ +PF FM + R KD Sbjct: 101 LFLVSLALFMTFYVMAPTFDRAWNEGVKPLQENRISEEEAFGKIVDPFREFMTQHVRPKD 160 Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204 L F D+A + + + I+ RILIP+FMISELRR FEIGFLI+LPFL+ID+IV+T Sbjct: 161 LQTFTDLASRTFPKAEAG--EKIDLRILIPAFMISELRRGFEIGFLIVLPFLVIDIIVST 218 Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IVM+MGMMMLPPT ISLPFKV+FF+LIDGW+LLV LV+SF Sbjct: 219 IVMSMGMMMLPPTVISLPFKVLFFILIDGWNLLVSGLVRSF 259 >gi|319406982|emb|CBI80619.1| Flagellar biosynthetic protein fliP [Bartonella sp. 1-1C] Length = 250 Score = 219 bits (557), Expect = 4e-55, Method: Composition-based stats. Identities = 137/254 (53%), Positives = 190/254 (74%), Gaps = 13/254 (5%) Query: 1 MIRYCFFAL--FLVTPELVFAK-------SSLHDVMNIPADLSISTWIVRTFGIFTILSI 51 M R+ F L FL+ + FA+ S L + + P SIS IV+ FG+ TILS+ Sbjct: 1 MKRFGGFVLMIFLLATTVAFAQKTGAENASGLAGLFSYPQ-GSISGRIVQLFGLLTILSV 59 Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP LLIMVT F RF I FS+LRTG+G+ + P NLV+ISLALFM+FYVM+PT + + E G+ Sbjct: 60 APGLLIMVTSFTRFAIAFSLLRTGLGLQTTPSNLVMISLALFMSFYVMAPTFNTAWEDGV 119 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 PL+NN+I+E AI+++++PF FM + REKDL LF++++ SS + + +++R+ Sbjct: 120 HPLVNNKISEQQAIEKISQPFREFMISQVREKDLDLFVNLSDSSLQ---VKTGSDVDFRV 176 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 L+P+FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVL+ Sbjct: 177 LVPAFMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLV 236 Query: 232 DGWSLLVENLVKSF 245 DGW+LLV +L++SF Sbjct: 237 DGWNLLVGSLIRSF 250 >gi|147678411|ref|YP_001212626.1| flagellar biosynthesis protein FliP [Pelotomaculum thermopropionicum SI] gi|146274508|dbj|BAF60257.1| flagellar biosynthesis pathway, component FliP [Pelotomaculum thermopropionicum SI] Length = 257 Score = 219 bits (557), Expect = 4e-55, Method: Composition-based stats. Identities = 94/194 (48%), Positives = 135/194 (69%), Gaps = 4/194 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP L+M+T F R IIV S+LRT +G+ P N ++I LALF+T ++M+P + I Sbjct: 67 APAFLVMMTSFTRIIIVLSLLRTALGVHQAPANQIVIGLALFLTVFIMAPVYREINDNSI 126 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 QP + NQI++ A +R +P FM TREKDL LF+ +A K + + + Sbjct: 127 QPYLQNQISQEEAQERGVKPLRDFMLRQTREKDLGLFISLAKMEKPE----KPEDVPLHV 182 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 +IPSF+ISEL+ +FEIGFL+ +PFL+IDM+VA+I+M+MGM MLPP ISLPFK++ FV++ Sbjct: 183 VIPSFIISELKTAFEIGFLLFVPFLVIDMVVASILMSMGMFMLPPVMISLPFKILLFVMV 242 Query: 232 DGWSLLVENLVKSF 245 DGW L+V++LV+SF Sbjct: 243 DGWYLVVKSLVESF 256 >gi|295690701|ref|YP_003594394.1| flagellar biosynthetic protein FliP [Caulobacter segnis ATCC 21756] gi|295432604|gb|ADG11776.1| flagellar biosynthetic protein FliP [Caulobacter segnis ATCC 21756] Length = 265 Score = 219 bits (557), Expect = 4e-55, Method: Composition-based stats. Identities = 105/245 (42%), Positives = 160/245 (65%), Gaps = 6/245 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 +I V P A+S+++ +N+ ++ +V+ + T+LS+AP ++IM T Sbjct: 21 IISVLAAIACAVMPAAAMAQSAVN--INLGTGAGLTDRVVQLVALMTVLSLAPSIVIMTT 78 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R ++V +LRT +G+ S PPN VIISLALF+T VM PT +RS + GI+PL++ QI Sbjct: 79 SFVRIVVVLGLLRTAIGVQSSPPNPVIISLALFLTAIVMGPTFERSYDAGIKPLLDKQIE 138 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A + P FM + DL+LF+ ++ T + +++ P+FMISE Sbjct: 139 LPEAFDAASGPVKQFMLSQVDRDDLALFVRLSKIPQPKT----AEDTPIKVVTPAFMISE 194 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+R+FEIGFL+ +PFL+ID++VA+++M+MGMMMLPP +ISLPFK+IFFVL+DGW L+ + Sbjct: 195 LKRAFEIGFLLFIPFLVIDLVVASVLMSMGMMMLPPATISLPFKLIFFVLVDGWRLVAGS 254 Query: 241 LVKSF 245 LV+SF Sbjct: 255 LVESF 259 >gi|157371197|ref|YP_001479186.1| flagellar biosynthesis protein FliP [Serratia proteamaculans 568] gi|157322961|gb|ABV42058.1| flagellar biosynthetic protein FliP [Serratia proteamaculans 568] Length = 274 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 92/226 (40%), Positives = 147/226 (65%), Gaps = 6/226 (2%) Query: 22 SLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79 L +++ P +W V+T + T LS P +L+M+T F R IIV +LR +G Sbjct: 51 QLPGLISQPLAGGGQSWSLPVQTLVLLTSLSFLPAMLLMMTSFTRIIIVLGLLRNALGTP 110 Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139 S PPN V++ LALF+TF++MSP D+ + P ++I+ A+ + ++P FM Sbjct: 111 SAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISLDVAMDKGSQPLREFMLRQ 170 Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199 TRE DL+L+ +A+ + + + RIL+P+++ SEL+ +F+IGF + +PFLIID Sbjct: 171 TRETDLALYAKLANLP----PLAGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLIID 226 Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 227 LVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 272 >gi|91785622|ref|YP_560828.1| flagellar biosynthesis protein FliP [Burkholderia xenovorans LB400] gi|91689576|gb|ABE32776.1| Flagellar transport protein FliP [Burkholderia xenovorans LB400] Length = 279 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 104/246 (42%), Positives = 154/246 (62%), Gaps = 7/246 (2%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVT 60 AL L P L FA+++ N P + + V+T + T+LS P +++M+T Sbjct: 38 VALPALMLALPTLSFAQAAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMVLMMT 97 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R IIV S+LR +G + PPN V++ LALF+T +VMSP LD++ G +P + I Sbjct: 98 SFTRIIIVLSLLRQALGTTTTPPNQVLVGLALFLTLFVMSPVLDKAYTDGYKPFSDGTIP 157 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 TA+ R PF FM TRE DL+LF ++H + + + +L+PSF+ SE Sbjct: 158 METAVNRGLAPFKTFMLRQTRESDLALFARISH----AAPMQGPEDVPLSLLVPSFVTSE 213 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ F+IGF I +PFLIIDM+VA+++M+MGMMM+ P +ISLPFK++ FVL+DGW LL+ + Sbjct: 214 LKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATISLPFKLMLFVLVDGWQLLLGS 273 Query: 241 LVKSFI 246 L +SF+ Sbjct: 274 LAQSFV 279 >gi|240137203|ref|YP_002961672.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens AM1] gi|240007169|gb|ACS38395.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens AM1] Length = 260 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 123/221 (55%), Positives = 163/221 (73%), Gaps = 2/221 (0%) Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84 D + P + + S I++ + T+LS+AP LL+MVT F RF + FS LR+G+G+ S P N Sbjct: 41 DALLPPGNGAASGRIIQLVALLTVLSLAPGLLVMVTSFTRFAVAFSFLRSGLGLQSTPAN 100 Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144 L ++SLALFMTFYVM+PT DR+ G++PL N+I+E A ++ +PF FM + R KD Sbjct: 101 LFLVSLALFMTFYVMAPTFDRAWNEGVKPLQENRISEEEAFGKIVDPFREFMTQHVRPKD 160 Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204 L F D+A + + + I+ RILIP+FMISELRR FEIGFLI+LPFL+ID+IV+T Sbjct: 161 LQTFTDLASRTFPKAEAG--EKIDLRILIPAFMISELRRGFEIGFLIVLPFLVIDIIVST 218 Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IVM+MGMMMLPPT ISLPFKV+FF+LIDGW+LLV LV+SF Sbjct: 219 IVMSMGMMMLPPTVISLPFKVLFFILIDGWNLLVSGLVRSF 259 >gi|188579873|ref|YP_001923318.1| flagellar biosynthesis protein FliP [Methylobacterium populi BJ001] gi|179343371|gb|ACB78783.1| flagellar biosynthetic protein FliP [Methylobacterium populi BJ001] Length = 253 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 126/251 (50%), Positives = 166/251 (66%), Gaps = 10/251 (3%) Query: 3 RYCFFALFLVTPELVFAKSSLHDVMNIPA--------DLSISTWIVRTFGIFTILSIAPI 54 R A+ L V +P + + S I++ + T+LS+AP Sbjct: 4 RLSLAAIVLGLTATAAVAQGAGGVTGVPGLDALLPPGNGAASGRIIQLVALLTVLSLAPG 63 Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114 LL+M+T F RF + FS LR+G+G+ S P NL ++SLALFMTFYVM+PT DR+ G++PL Sbjct: 64 LLVMMTSFTRFAVAFSFLRSGLGLQSTPANLFLVSLALFMTFYVMAPTFDRAWNEGVKPL 123 Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174 N+I E A ++ EPF FM + R KDL F D+A + + + I+ RILIP Sbjct: 124 QENRIGEEEAFGKIVEPFREFMTQHVRPKDLQTFTDLASRNFPKAEAG--EKIDLRILIP 181 Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234 +FMISELRR FEIGFLI+LPFL+ID+IV+TIVM+MGMMMLPPT ISLPFKV+FF+LIDGW Sbjct: 182 AFMISELRRGFEIGFLIVLPFLVIDIIVSTIVMSMGMMMLPPTVISLPFKVLFFILIDGW 241 Query: 235 SLLVENLVKSF 245 +LLV LV+SF Sbjct: 242 NLLVSGLVRSF 252 >gi|313200553|ref|YP_004039211.1| flagellar biosynthetic protein flip [Methylovorus sp. MP688] gi|312439869|gb|ADQ83975.1| flagellar biosynthetic protein FliP [Methylovorus sp. MP688] Length = 270 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 96/238 (40%), Positives = 152/238 (63%), Gaps = 6/238 (2%) Query: 10 FLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIA--PILLIMVTCFPRFII 67 L P L A++++ + P + + + + S++ P +L+M+T F R II Sbjct: 36 LLAIPALAHAEAAMPLINAAPGSGGSQNYTLSLQTLLLLTSLSFLPAVLLMMTGFTRIII 95 Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127 V S+LR +G + PPN V++ LALF+TF+VMSP +D+ QPL N+IT A+++ Sbjct: 96 VLSLLRQALGTPTSPPNQVLVGLALFLTFFVMSPVMDKIYVEAYQPLSENKITLQEALEK 155 Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187 A P FM TRE D++LFM ++ R+ + + R+L+P+FM SEL+ +F+I Sbjct: 156 GAAPLKTFMLKQTREADIALFMRIS----RSDAVDGPEQTPLRVLVPAFMTSELKTAFQI 211 Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GF I +PFLIIDM+VA+++M+MGMMM+ P ++LPFK++ FVL+DGW L++ +L +SF Sbjct: 212 GFAIFIPFLIIDMVVASVLMSMGMMMVSPAIVALPFKLMLFVLVDGWQLVLGSLAESF 269 >gi|307131599|ref|YP_003883615.1| flagellar biosynthesis protein fliP [Dickeya dadantii 3937] gi|306529128|gb|ADM99058.1| Flagellar biosynthesis protein fliP [Dickeya dadantii 3937] Length = 258 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 98/247 (39%), Positives = 160/247 (64%), Gaps = 8/247 (3%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 ++RY ++ L+ A+ L +++ P +W ++T T LS P +L+M Sbjct: 16 LLRYPAASILLLIAPHALAQ--LPGIISQPLANGGQSWSLPIQTLVFITSLSFIPAVLLM 73 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +TCF R IIV S+LR +G + PPN V++ L+LF+TF+VMSP L+R + +P ++ Sbjct: 74 MTCFTRIIIVLSLLRNALGTPTAPPNQVLLGLSLFLTFFVMSPVLNRIYDEAYRPFSEDK 133 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ AI++ ++P FM TRE DL+LF +A + + + R+L+P+++ Sbjct: 134 ISMEVAIEKGSQPLREFMLRQTREADLALFTRLAQIP----SLQGPEAVPMRVLVPAYVT 189 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF I +PFL+ID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ Sbjct: 190 SELKTAFQIGFTIFIPFLLIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLL 249 Query: 239 ENLVKSF 245 +L +SF Sbjct: 250 GSLAQSF 256 >gi|316932831|ref|YP_004107813.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris DX-1] gi|315600545|gb|ADU43080.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris DX-1] Length = 255 Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats. Identities = 112/245 (45%), Positives = 169/245 (68%), Gaps = 7/245 (2%) Query: 4 YCFFALFLVTPELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 + ++++V + A + D+ + ++ ++ + T+LSIAP +LIM+T Sbjct: 11 FIILSVWIVAALAMIAPAQAQDISINLGGQGGPGVTERAIQLIALLTVLSIAPSILIMMT 70 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R ++V S+LRT +G + PPN VII+LALF+T +VM PTL ++ + GI+PL+ N+I Sbjct: 71 SFTRIVVVLSLLRTALGTATAPPNAVIIALALFLTAFVMGPTLQKAYDDGIKPLIANEIG 130 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A+ R + P VFM+ N REKDL LF+D++ T + + RIL+P+F+ISE Sbjct: 131 VDDALVRASGPMRVFMQKNVREKDLKLFLDLSGEPPPAT----PEDLSLRILMPAFLISE 186 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+R+FEIGFL+ LPFLIID++VA+I+M+MGMMMLPP +SLPFK+IFFVL+DGWSL+ + Sbjct: 187 LKRAFEIGFLLFLPFLIIDLVVASILMSMGMMMLPPVVVSLPFKLIFFVLVDGWSLVAGS 246 Query: 241 LVKSF 245 LV+S+ Sbjct: 247 LVQSY 251 >gi|218778860|ref|YP_002430178.1| flagellar biosynthetic protein FliP [Desulfatibacillum alkenivorans AK-01] gi|218760244|gb|ACL02710.1| Flagellar biosynthetic protein FliP [Desulfatibacillum alkenivorans AK-01] Length = 256 Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats. Identities = 99/249 (39%), Positives = 156/249 (62%), Gaps = 8/249 (3%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSIS----TWIVRTFGIFTILSIAPILL 56 M+ A +V PE+ A + + I + + + +++ + T+L++AP +L Sbjct: 9 MLMLPALACLVVLPEIAEAATIAVPSVQIGVEEATGPEQVSVLLQIVALLTVLTLAPAIL 68 Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116 +++T F R +VFS LR +G +PPN V++ LALF+T ++M P +QP +N Sbjct: 69 MLMTSFTRLAVVFSFLRHALGTQQMPPNQVMVGLALFLTVFIMMPVWKDINTNALQPYLN 128 Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176 +I + AI++ P FM +TREKDL+LF+ ++ + N + LIP+F Sbjct: 129 EEIGDQEAIEKAVTPLREFMFRHTREKDLALFVKISGEAKPN----SPKDVTIWTLIPAF 184 Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236 +ISEL +F IGF+I +PFLIIDM+VA+++++MGMMMLPP ISLPFK++ FVL+DGWSL Sbjct: 185 VISELTTAFMIGFIIYVPFLIIDMVVASVLLSMGMMMLPPVMISLPFKLMLFVLVDGWSL 244 Query: 237 LVENLVKSF 245 +V +LV+SF Sbjct: 245 IVGSLVQSF 253 >gi|239817147|ref|YP_002946057.1| flagellar biosynthetic protein FliP [Variovorax paradoxus S110] gi|239803724|gb|ACS20791.1| flagellar biosynthetic protein FliP [Variovorax paradoxus S110] Length = 253 Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats. Identities = 99/227 (43%), Positives = 146/227 (64%), Gaps = 6/227 (2%) Query: 21 SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 L + + P TW V+T + T LS P LL+ +T F R +IV +LRT +G Sbjct: 29 QGLPGLTSTPGPGGSQTWSLSVQTLVMLTSLSFLPALLLSMTSFTRILIVLGLLRTAIGT 88 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 S PPN +++ L+LF+TF+VM+P D+ + +P N+IT A+++ PF FM Sbjct: 89 QSSPPNQILVGLSLFLTFFVMAPVFDKVHDEAYKPFSENKITAEKALEKGIAPFKSFMLK 148 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 TRE DL+LF +A D+ + + RIL+PSF+ISEL+ +F+IGF I +PFLII Sbjct: 149 QTRENDLALFARLAKIP----DMQGPEEVPLRILLPSFVISELKTAFQIGFTIFIPFLII 204 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 D++VA+++M+MGMMM+PP SI+LPFK++ FV+ DGW LL+ L +SF Sbjct: 205 DLVVASVLMSMGMMMVPPASIALPFKLMLFVMADGWQLLIGALAQSF 251 >gi|218528672|ref|YP_002419488.1| flagellar biosynthesis protein FliP [Methylobacterium chloromethanicum CM4] gi|218520975|gb|ACK81560.1| flagellar biosynthetic protein FliP [Methylobacterium chloromethanicum CM4] Length = 260 Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats. Identities = 123/221 (55%), Positives = 163/221 (73%), Gaps = 2/221 (0%) Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84 D + P + + S I++ + T+LS+AP LL+MVT F RF + FS LR+G+G+ S P N Sbjct: 41 DALLPPGNGAASGRIIQLVALLTVLSLAPGLLVMVTSFTRFAVAFSFLRSGLGLQSTPAN 100 Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144 L ++SLALFMTFYVM+PT DR+ G++PL N+I+E A ++ +PF FM + R KD Sbjct: 101 LFLVSLALFMTFYVMAPTFDRAWNEGVKPLQENRISEEEAFGKIVDPFREFMTQHVRPKD 160 Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204 L F D+A + + + I+ RILIP+FMISELRR FEIGFLI+LPFL+ID+IV+T Sbjct: 161 LQTFTDLASRTFPKAEAG--EKIDLRILIPAFMISELRRGFEIGFLIVLPFLVIDIIVST 218 Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IVM+MGMMMLPPT ISLPFKV+FF+LIDGW+LLV LV+SF Sbjct: 219 IVMSMGMMMLPPTVISLPFKVLFFILIDGWNLLVSGLVRSF 259 >gi|163850069|ref|YP_001638112.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens PA1] gi|163661674|gb|ABY29041.1| flagellar biosynthetic protein FliP [Methylobacterium extorquens PA1] Length = 260 Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats. Identities = 123/221 (55%), Positives = 163/221 (73%), Gaps = 2/221 (0%) Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84 D + P + + S I++ + T+LS+AP LL+MVT F RF + FS LR+G+G+ S P N Sbjct: 41 DALLPPGNGAASGRIIQLVALLTVLSLAPGLLVMVTSFTRFAVAFSFLRSGLGLQSTPAN 100 Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144 L ++SLALFMTFYVM+PT DR+ G++PL N+I+E A ++ +PF FM + R KD Sbjct: 101 LFLVSLALFMTFYVMAPTFDRAWNEGVKPLQENRISEEEAFGKIVDPFREFMTQHVRPKD 160 Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204 L F D+A + + + I+ RILIP+FMISELRR FEIGFLI+LPFL+ID+IV+T Sbjct: 161 LQTFTDLASRTFPKAEAG--EKIDLRILIPAFMISELRRGFEIGFLIVLPFLVIDIIVST 218 Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IVM+MGMMMLPPT ISLPFKV+FF+LIDGW+LLV LV+SF Sbjct: 219 IVMSMGMMMLPPTVISLPFKVLFFILIDGWNLLVSGLVRSF 259 >gi|187925750|ref|YP_001897392.1| flagellar biosynthesis protein FliP [Burkholderia phytofirmans PsJN] gi|187716944|gb|ACD18168.1| flagellar biosynthetic protein FliP [Burkholderia phytofirmans PsJN] Length = 277 Score = 218 bits (555), Expect = 6e-55, Method: Composition-based stats. Identities = 102/236 (43%), Positives = 151/236 (63%), Gaps = 7/236 (2%) Query: 14 PELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70 P L FA+++ N P + + V+T + T+LS P +L+M+T F R IIV S Sbjct: 46 PTLSFAQAAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTRIIIVLS 105 Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130 +LR +G + PPN V++ LALF+T +VMSP LD++ G +P + I TA+ R Sbjct: 106 LLRQALGTSTTPPNQVLVGLALFLTLFVMSPVLDKAYTDGYKPFSDGTIPMETAVNRGLA 165 Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190 PF FM TRE DL+LF ++H + + + +L+PSF+ SEL+ F+IGF Sbjct: 166 PFKTFMLRQTRESDLALFARISH----AAPMQGPEDVPLSLLVPSFVTSELKTGFQIGFT 221 Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 I +PFLIIDM+VA+++M+MGMMM+ P +ISLPFK++ FVL+DGW LL+ +L +SF+ Sbjct: 222 IFIPFLIIDMVVASVLMSMGMMMVSPATISLPFKLMLFVLVDGWQLLLGSLAQSFV 277 >gi|254504560|ref|ZP_05116711.1| flagellar biosynthetic protein FliP [Labrenzia alexandrii DFL-11] gi|222440631|gb|EEE47310.1| flagellar biosynthetic protein FliP [Labrenzia alexandrii DFL-11] Length = 255 Score = 218 bits (555), Expect = 6e-55, Method: Composition-based stats. Identities = 108/239 (45%), Positives = 163/239 (68%), Gaps = 4/239 (1%) Query: 7 FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66 A + L + + D +++ V+ + T+LS+AP +L+MVT F R + Sbjct: 18 IAFAMGAIALTLPAHAQEISVGFGDDANLTERAVQLVILLTVLSLAPSILVMVTSFTRIV 77 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 +V S+LR+ +G+ + PPN+V++SLALF++ ++M PTL + + G+QPL++ I A + Sbjct: 78 VVLSLLRSAIGLQTAPPNMVMVSLALFLSAFIMMPTLQAAYDAGVQPLIDGDIEIDQAYE 137 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 R +EPF FM + REKDL LF +++ T + +E +LIP+FMISELRR+FE Sbjct: 138 RASEPFRDFMLSQVREKDLMLFQELSGRDAPET----PEDLEMAVLIPAFMISELRRAFE 193 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGFL+ LPFLIID+++A+++M+MGMMMLPP ISLPFK+IFFVL+DGW+L+ +LVKSF Sbjct: 194 IGFLLYLPFLIIDLVIASVLMSMGMMMLPPVVISLPFKLIFFVLVDGWNLVAGSLVKSF 252 >gi|311279110|ref|YP_003941341.1| flagellar biosynthetic protein FliP [Enterobacter cloacae SCF1] gi|308748305|gb|ADO48057.1| flagellar biosynthetic protein FliP [Enterobacter cloacae SCF1] Length = 245 Score = 218 bits (555), Expect = 6e-55, Method: Composition-based stats. Identities = 104/247 (42%), Positives = 158/247 (63%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 M R +L + A + L +++ P +W V+T T L+ P +L+M Sbjct: 1 MRRLLSLSLAALLLLSPAAFAQLPGLVSQPLPGGGQSWSLPVQTLVFITSLTFLPAILLM 60 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIVF +LR+ +G S PPN V++ LALF+TF++MSP +D+ QP +N+ Sbjct: 61 MTSFTRIIIVFGLLRSALGTASAPPNQVLLGLALFLTFFIMSPVIDKIYTDAYQPFNDNK 120 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 IT AI + A+P FM TRE DL+LF ++HS I + + RIL+P+++ Sbjct: 121 ITLEQAIDKGAQPLREFMLRQTREADLALFARLSHS----EPIQGPEAVPMRILLPAYVT 176 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236 Query: 239 ENLVKSF 245 +L +SF Sbjct: 237 GSLAQSF 243 >gi|91211166|ref|YP_541152.1| flagellar biosynthesis protein FliP [Escherichia coli UTI89] gi|117624088|ref|YP_853001.1| flagellar biosynthesis protein FliP [Escherichia coli APEC O1] gi|218558805|ref|YP_002391718.1| flagellar biosynthesis protein FliP [Escherichia coli S88] gi|91072740|gb|ABE07621.1| flagellar assembly protein FliP [Escherichia coli UTI89] gi|115513212|gb|ABJ01287.1| flagellar assembly protein FliP [Escherichia coli APEC O1] gi|218365574|emb|CAR03301.1| flagellar biosynthesis protein [Escherichia coli S88] gi|294490075|gb|ADE88831.1| flagellar biosynthetic protein FliP [Escherichia coli IHE3034] gi|307626576|gb|ADN70880.1| flagellar biosynthesis protein FliP [Escherichia coli UM146] gi|323952441|gb|EGB48314.1| flagellar biosynthetic protein FliP [Escherichia coli H252] Length = 245 Score = 218 bits (555), Expect = 6e-55, Method: Composition-based stats. Identities = 99/247 (40%), Positives = 153/247 (61%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 M R A L+ A + L + + P +W V+T T L+ P +L+M Sbjct: 1 MRRLLSVAPVLLWLVTPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP + Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFNEEK 120 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ A+++ +P FM TRE DL LF +A++ + + + RIL+P+++ Sbjct: 121 ISMQEALEKGEQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVT 176 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236 Query: 239 ENLVKSF 245 +L +SF Sbjct: 237 GSLAQSF 243 >gi|296445179|ref|ZP_06887139.1| flagellar biosynthetic protein FliP [Methylosinus trichosporium OB3b] gi|296257353|gb|EFH04420.1| flagellar biosynthetic protein FliP [Methylosinus trichosporium OB3b] Length = 243 Score = 218 bits (555), Expect = 7e-55, Method: Composition-based stats. Identities = 123/245 (50%), Positives = 168/245 (68%), Gaps = 3/245 (1%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 M R ++ P A+ + + + S IV+ + T+LSIAP LLIMVT Sbjct: 1 MKRLALLLTLVLLPGCALAEGFDLNALLPAGGGAASGKIVQLLAVLTVLSIAPGLLIMVT 60 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F RF I S LR+G+G+ S P NLV+ISLALFMTFYVM+PT + + + G++PLM+ +IT Sbjct: 61 SFTRFAIALSFLRSGLGLQSTPANLVLISLALFMTFYVMAPTFEAAWQDGLKPLMDQKIT 120 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 E A +++++PF FM N REKD+ LF ++ D D + ++L P+FMISE Sbjct: 121 EVEAFEKISQPFRKFMIANVREKDIKLFDSLSREPRPAGDY---DKLGLQVLAPAFMISE 177 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 LRR FEIGFLI+LPFL+IDMIVA + M+MGMMMLPPT+ISLP KV+FF+LIDGW+LLV + Sbjct: 178 LRRGFEIGFLIVLPFLVIDMIVAVVTMSMGMMMLPPTAISLPVKVLFFILIDGWNLLVGS 237 Query: 241 LVKSF 245 L++S+ Sbjct: 238 LIRSY 242 >gi|156933432|ref|YP_001437348.1| flagellar biosynthesis protein FliP [Cronobacter sakazakii ATCC BAA-894] gi|156531686|gb|ABU76512.1| hypothetical protein ESA_01250 [Cronobacter sakazakii ATCC BAA-894] Length = 245 Score = 218 bits (555), Expect = 7e-55, Method: Composition-based stats. Identities = 102/247 (41%), Positives = 156/247 (63%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 M R+ + + A + L +++ P +W V+T T L+ P +L+M Sbjct: 1 MRRWLNLSFLALGLLAAPAMAQLPGLVSQPISGGGQSWSLPVQTLVFITSLTFLPAILLM 60 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP N+ Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYSDAYQPFNENK 120 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ A+ R A+P FM TRE DL+LF +A++ I + + RIL+P+++ Sbjct: 121 ISMEVALDRGAQPLREFMLRQTREADLALFAKLANT----QPIQGPEAVPMRILLPAYVT 176 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP SI+LPFK++ FVL+DGW LLV Sbjct: 177 SELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASIALPFKLMLFVLVDGWQLLV 236 Query: 239 ENLVKSF 245 +L +SF Sbjct: 237 GSLAQSF 243 >gi|83309709|ref|YP_419973.1| flagellar biosynthesis protein FliP [Magnetospirillum magneticum AMB-1] gi|82944550|dbj|BAE49414.1| Flagellar biosynthesis pathway [Magnetospirillum magneticum AMB-1] Length = 250 Score = 218 bits (555), Expect = 7e-55, Method: Composition-based stats. Identities = 109/245 (44%), Positives = 161/245 (65%), Gaps = 5/245 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 MI + SL+ + P S ++ I++ + T+LS+AP +L+MVT Sbjct: 10 MILAAAVGILTALAAGPVLAQSLNIDLGGPQ-ASATSRIIQLIALTTVLSVAPSILVMVT 68 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F RF++V LR +G PPN V++SLA+F+T +VM+PT +++ GI P+M+ + Sbjct: 69 SFTRFVVVLGFLRQALGTQQSPPNTVMVSLAMFLTAFVMAPTFEKAWTDGIAPVMDGHLD 128 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 E +R +PF FM + R +DL LFMD++ R ++ K + R LIP+FMISE Sbjct: 129 EIEGFERAVKPFHAFMSKHVRGQDLKLFMDLS----RAKEVEKAEDAPLRALIPAFMISE 184 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 LRR+FEIGFLI LPFLIIDM++A+++M+MGMMM+PP ISLPFK+IFFV++DGW L+V + Sbjct: 185 LRRAFEIGFLIFLPFLIIDMVIASVLMSMGMMMIPPAMISLPFKLIFFVMVDGWYLVVGS 244 Query: 241 LVKSF 245 LV+S+ Sbjct: 245 LVQSY 249 >gi|209964214|ref|YP_002297129.1| flagellar biosynthesis protein FliP [Rhodospirillum centenum SW] gi|209957680|gb|ACI98316.1| flagellar biosynthesis protein FliP [Rhodospirillum centenum SW] Length = 255 Score = 218 bits (555), Expect = 7e-55, Method: Composition-based stats. Identities = 110/215 (51%), Positives = 157/215 (73%), Gaps = 4/215 (1%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 + + I++ + T+LS+AP +LIM+TCF R +IV S LR+ MG VPPN V++SL Sbjct: 42 QSGTATGRIIQLVALLTVLSLAPSILIMMTCFVRIVIVLSFLRSAMGTQQVPPNQVLVSL 101 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 ALF+TF++M+P + S GI+PL+N I E TA R EPF FM + RE+DL LF+D Sbjct: 102 ALFLTFFIMAPVMQESYANGIRPLINEDIDELTAFNRAVEPFHGFMMKHVRERDLQLFLD 161 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 +A + + + +++IP+FM+SEL+R+FEIGFL+ +PFL+IDM+VA+++M+MG Sbjct: 162 IA----KTGPVADPKDVPLQVVIPAFMLSELKRAFEIGFLVFVPFLVIDMVVASVLMSMG 217 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMMLPPT I+LPFKVIFFVL+DGW L+V +LV+SF Sbjct: 218 MMMLPPTLIALPFKVIFFVLVDGWYLIVGSLVQSF 252 >gi|300717241|ref|YP_003742044.1| flagellar biosynthesis protein [Erwinia billingiae Eb661] gi|299063077|emb|CAX60197.1| Flagellar biosynthesis protein [Erwinia billingiae Eb661] Length = 244 Score = 217 bits (554), Expect = 7e-55, Method: Composition-based stats. Identities = 97/227 (42%), Positives = 149/227 (65%), Gaps = 6/227 (2%) Query: 21 SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 + L +M+ P +W V+T T L+ P +L+M+T F R IIVF +LR +G Sbjct: 20 AQLPGLMSHPTANGGQSWSLPVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGT 79 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 S PPN V++ LALF+TF++M P D+ + P ++I+ AI + A+P FM Sbjct: 80 PSAPPNQVLLGLALFLTFFIMGPVFDKIYQDAYLPFSQDKISMQDAIDKGAQPLREFMLR 139 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 TRE DL+LF +++S + + + RIL+P+++ SEL+ +F+IGF + +PFLII Sbjct: 140 QTREADLALFARLSNSP----PLQGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLII 195 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 D++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGWSLLV +L +SF Sbjct: 196 DLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWSLLVSSLAQSF 242 >gi|323961992|gb|EGB57591.1| flagellar biosynthetic protein FliP [Escherichia coli H489] Length = 245 Score = 217 bits (554), Expect = 7e-55, Method: Composition-based stats. Identities = 101/245 (41%), Positives = 157/245 (64%), Gaps = 5/245 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 ++ L+LVTP L FA+ + +P + V+T T L+ P +L+M+T Sbjct: 4 LLSVAPVLLWLVTP-LAFAQLPGINSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMT 62 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ Sbjct: 63 SFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKIS 122 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A+++ A+P FM TRE DL LF +A++ + + + RIL+P+++ SE Sbjct: 123 MQEALEKGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSE 178 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV + Sbjct: 179 LKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGS 238 Query: 241 LVKSF 245 L +SF Sbjct: 239 LAQSF 243 >gi|83589638|ref|YP_429647.1| flagellar biosynthesis protein FliP [Moorella thermoacetica ATCC 39073] gi|83572552|gb|ABC19104.1| flagellar biosynthetic protein FliP [Moorella thermoacetica ATCC 39073] Length = 317 Score = 217 bits (554), Expect = 8e-55, Method: Composition-based stats. Identities = 84/187 (44%), Positives = 128/187 (68%), Gaps = 4/187 (2%) Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R I+V S +R+ + PPN ++I LALF+TF++M+P ++ I P + + Sbjct: 135 MTSFTRIIVVLSFVRSALATQQTPPNQILIGLALFLTFFIMAPVYNQVKTQAIDPYLAGR 194 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 IT+ A+ A P FM TREKDL+LF+ M+ + T D + +LIP+F+I Sbjct: 195 ITQEQALAAGARPVREFMYRQTREKDLALFVHMSGMAQPRT----RDDVPLHVLIPAFII 250 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F++GFLI +PFLIID+++A+ +MAMGM M+PP ISLPFK++ FVL+DGW L+V Sbjct: 251 SELKTAFQMGFLIYIPFLIIDLVIASTLMAMGMFMVPPVMISLPFKLMLFVLVDGWYLVV 310 Query: 239 ENLVKSF 245 ++L++SF Sbjct: 311 KSLLESF 317 >gi|157145258|ref|YP_001452577.1| flagellar biosynthesis protein FliP [Citrobacter koseri ATCC BAA-895] gi|78100273|gb|ABB20928.1| flagellar biosynthesis/transport protein [Citrobacter koseri] gi|157082463|gb|ABV12141.1| hypothetical protein CKO_00995 [Citrobacter koseri ATCC BAA-895] Length = 245 Score = 217 bits (554), Expect = 9e-55, Method: Composition-based stats. Identities = 99/245 (40%), Positives = 155/245 (63%), Gaps = 5/245 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 ++ AL+ ++P FA+ +P + V+T T L+ P +L+M+T Sbjct: 4 LLSLTLMALWFISPA-AFAQLPGLVSQPLPGGGQSWSLPVQTLVFITSLTFLPAILLMMT 62 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ Sbjct: 63 SFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAWQPFSEEKIS 122 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A+++ A+P FM TRE DL LF +A+S + + + RIL+P+++ SE Sbjct: 123 MQEALEKGAQPLREFMLRQTREADLGLFARLANSG----PLQGPEAVPMRILLPAYVTSE 178 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV + Sbjct: 179 LKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGS 238 Query: 241 LVKSF 245 L +SF Sbjct: 239 LAQSF 243 >gi|182418437|ref|ZP_02949731.1| flagellar biosynthetic protein FliP [Clostridium butyricum 5521] gi|237666336|ref|ZP_04526321.1| flagellar biosynthetic protein FliP [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377819|gb|EDT75363.1| flagellar biosynthetic protein FliP [Clostridium butyricum 5521] gi|237657535|gb|EEP55090.1| flagellar biosynthetic protein FliP [Clostridium butyricum E4 str. BoNT E BL5262] Length = 259 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 100/225 (44%), Positives = 151/225 (67%), Gaps = 5/225 (2%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 S D + P D + +R FT+L++ P ++IMVT F R ++VFS L+T +G+ Sbjct: 40 SFGDGSDSPKDYVTN---IRILIFFTVLALLPSIVIMVTSFTRIVVVFSFLKTAIGVTQS 96 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PN ++ LA+F+TF++M P + GIQP + N+IT+ AI +++P FM TR Sbjct: 97 VPNQILTGLAIFLTFFIMQPVYSQMNTNGIQPYLENKITQEQAIDEISKPLKEFMAKETR 156 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 + DL LF+++ + I + I + L+P+F ISELR +FEIGFLI LPFL+IDM+ Sbjct: 157 QDDLELFIEINNVD--KQSIAEAKDIPFTSLVPAFAISELRTAFEIGFLIFLPFLVIDMV 214 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 VA+++M+MGM MLPPT+++LPFK+I FV+++GW LLVE L+KSF+ Sbjct: 215 VASVLMSMGMFMLPPTTVALPFKLILFVMVNGWHLLVEQLIKSFM 259 >gi|302037618|ref|YP_003797940.1| flagellar biosynthetic protein FliP [Candidatus Nitrospira defluvii] gi|300605682|emb|CBK42015.1| Flagellar biosynthetic protein FliP, export component [Candidatus Nitrospira defluvii] Length = 266 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 104/245 (42%), Positives = 153/245 (62%), Gaps = 5/245 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 ++ FA V +A + + +++ +FT+LS+AP L IMVT Sbjct: 26 LMSVAIFACLFVA-TSAYADGPSLTIDLGQGGSKQTAVVLQILALFTVLSLAPALFIMVT 84 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R +IV S LR MG VPPN V+ISLALF+T +VM+P + +QPL+ QI Sbjct: 85 SFTRMVIVLSFLRQAMGTQQVPPNQVLISLALFLTMFVMAPVGQAVYKDALQPLLAEQIG 144 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A R +P FM R+KDL LFM+++H+ T+ + + ++IP+F++SE Sbjct: 145 YEDAWNRGIQPIRAFMLKQMRDKDLELFMELSHAPK----ATQVEQVPIHVIIPAFVLSE 200 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 LR +F+IGFL+ +PFLI+DM+VA+++M+MGMM+LPP ISLPFK+I FVL DGW L+V + Sbjct: 201 LRIAFQIGFLLYIPFLIVDMVVASVLMSMGMMLLPPVMISLPFKLILFVLADGWYLVVGS 260 Query: 241 LVKSF 245 +V+SF Sbjct: 261 MVRSF 265 >gi|238916764|ref|YP_002930281.1| triacylglycerol lipase [Eubacterium eligens ATCC 27750] gi|238872124|gb|ACR71834.1| triacylglycerol lipase [Eubacterium eligens ATCC 27750] Length = 267 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 98/236 (41%), Positives = 149/236 (63%), Gaps = 2/236 (0%) Query: 10 FLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVF 69 + + +SL ++ D + +++ + T++S+AP +LIM+T F R +IV Sbjct: 33 VMAADTDTASGNSLINIGISAGDGNDMASVLQMLLVLTVISLAPSILIMLTSFTRIVIVL 92 Query: 70 SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129 R +G +VPPN VII L+LF+TF+VMSPT + ++PL NN+I+ A + Sbjct: 93 HFTRAAIGTQTVPPNQVIIGLSLFLTFFVMSPTFTEIYDSALKPLSNNEISVEEAYETGV 152 Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189 +P FM T KDL F +A + +T D I +L+PSF+ISELR +F IGF Sbjct: 153 KPLKTFMLKQTSTKDLDTFFKIA--GYEEGSVTSEDDISMTVLVPSFIISELRIAFIIGF 210 Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LI +PF+IIDM+V++ +M+MGMMMLPPT+IS PFK++ FV+ DGW+L++ NL+ +F Sbjct: 211 LIYIPFIIIDMVVSSTLMSMGMMMLPPTTISAPFKILLFVMADGWNLIIGNLITTF 266 >gi|302670736|ref|YP_003830696.1| flagellar biosynthetic protein FliP [Butyrivibrio proteoclasticus B316] gi|302395209|gb|ADL34114.1| flagellar biosynthetic protein FliP [Butyrivibrio proteoclasticus B316] Length = 314 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 94/215 (43%), Positives = 137/215 (63%), Gaps = 4/215 (1%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 +R T++S+AP LL+M+T F R I+ RT +G + PPNLV++ + Sbjct: 103 NGNGSLNGALRILITLTLISLAPTLLVMMTSFTRIIVALHFTRTAIGTQTSPPNLVMLGI 162 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 ALFMT ++M PTL + P N ++ + + +PF FM T++KD+ LFM+ Sbjct: 163 ALFMTLFIMQPTLTTVYNEAVIPFENGEMDQQEFFEEAMDPFRQFMYGQTQKKDVILFMN 222 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 + D I +LIPSF++SELR +F IGF+I +PF++IDM+VA+++M+MG Sbjct: 223 IDGIEWDGE----LDSIPNVVLIPSFIVSELRTAFIIGFMIYIPFIVIDMVVASVLMSMG 278 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMMLPPT+ISLPFK++ FVL DGWSL++ NLVKSF Sbjct: 279 MMMLPPTTISLPFKILLFVLADGWSLIIGNLVKSF 313 >gi|188589499|ref|YP_001920217.1| flagellar biosynthetic protein FliP [Clostridium botulinum E3 str. Alaska E43] gi|251778351|ref|ZP_04821271.1| flagellar biosynthetic protein FliP [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188499780|gb|ACD52916.1| flagellar biosynthetic protein FliP [Clostridium botulinum E3 str. Alaska E43] gi|243082666|gb|EES48556.1| flagellar biosynthetic protein FliP [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 259 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 91/206 (44%), Positives = 140/206 (67%), Gaps = 3/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ FTIL++ P ++IM+T F R +IVFS +++ MG+ PN ++ LALF+T ++M Sbjct: 56 IKILIFFTILAVLPSIVIMLTSFTRIVIVFSFIKSAMGVQQAIPNQILTGLALFLTIFIM 115 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP + QP + IT+ AI+ ++P FM TREKDL LF+++ + Sbjct: 116 SPVYNEVNTKAFQPYIEQSITQEEAIEIGSKPIKDFMLKQTREKDLELFVEINNVDKEE- 174 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 ++I + LIP+F ISEL+ +F+IGFLI LPF++IDM+VA+++M+MGMMMLPP + Sbjct: 175 --LTRENIPFTTLIPAFAISELKTAFQIGFLIYLPFIVIDMVVASVLMSMGMMMLPPAMV 232 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FV++DGW LLV++L+ SF Sbjct: 233 SLPFKLLLFVMVDGWYLLVKSLIMSF 258 >gi|157161419|ref|YP_001458737.1| flagellar biosynthesis protein FliP [Escherichia coli HS] gi|157067099|gb|ABV06354.1| flagellar biosynthetic protein FliP [Escherichia coli HS] Length = 245 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 101/247 (40%), Positives = 155/247 (62%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 M R A L+ A + L + + P +W V+T T L+ P +L+M Sbjct: 1 MRRLLSVAPVLLWLVTPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP + Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ A+++ A+P FM TRE DL LF +A++ + + + RIL+P+++I Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVI 176 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236 Query: 239 ENLVKSF 245 +L +SF Sbjct: 237 GSLAQSF 243 >gi|299131778|ref|ZP_07024973.1| flagellar biosynthetic protein FliP [Afipia sp. 1NLS2] gi|298591915|gb|EFI52115.1| flagellar biosynthetic protein FliP [Afipia sp. 1NLS2] Length = 252 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 109/245 (44%), Positives = 162/245 (66%), Gaps = 6/245 (2%) Query: 3 RYCFFALFLVTP--ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 R F ++ + FA+ + ++ ++ + T+LS+AP +L+M+T Sbjct: 9 RVLFLSVLIAATLATPAFAQDISINFGQGADGGGVTARAIQLIALLTVLSVAPSILVMMT 68 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R ++V S+LRT MG + PPN V+I+LALF+T +VM P L +S + G++P++ NQ+T Sbjct: 69 SFTRIVVVLSLLRTAMGTATAPPNSVMIALALFLTGFVMGPVLQKSYDDGVKPVIANQLT 128 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 + P FM+ N REKDL LFMD++ T D + RILIP+FMISE Sbjct: 129 VEQGLPLAIAPLRGFMQKNVREKDLKLFMDLSREPPPAT----PDEMSLRILIPAFMISE 184 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+R+FEIGFL+ LPFLIID++V++++M+MGMMMLPP +SLPFK+IFFVL+DGWSL+ + Sbjct: 185 LKRAFEIGFLLFLPFLIIDLVVSSVLMSMGMMMLPPVVVSLPFKLIFFVLVDGWSLVAGS 244 Query: 241 LVKSF 245 LV+S+ Sbjct: 245 LVQSY 249 >gi|319403967|emb|CBI77555.1| Flagellar biosynthetic protein fliP [Bartonella rochalimae ATCC BAA-1498] Length = 250 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 133/246 (54%), Positives = 186/246 (75%), Gaps = 9/246 (3%) Query: 6 FFALFLVTPELVFAKSSLHDVMNIPAD------LSISTWIVRTFGIFTILSIAPILLIMV 59 +FL+ + FA+ + + + A SIS IV+ FG+ TILS+AP LLIMV Sbjct: 8 VLMIFLLATTVAFAQKTGAENASGIAGLFSYPEGSISGRIVQLFGLLTILSVAPGLLIMV 67 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F RF I FS+LRTG+G+ + P NLV+ISLALFM+FYVM+PT + + E G+QPL+NN+I Sbjct: 68 TSFTRFAIAFSLLRTGLGLQTTPSNLVMISLALFMSFYVMAPTFNTAWEEGVQPLVNNKI 127 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 +E AI+++++PF FM + REKDL LF++++ SS + + I++R+L+P+FMIS Sbjct: 128 SEQQAIEKISQPFREFMISQVREKDLDLFVNLSDSSLQ---VKTGSDIDFRVLVPAFMIS 184 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 ELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVL+DGW+LLV Sbjct: 185 ELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLVDGWNLLVG 244 Query: 240 NLVKSF 245 +L++SF Sbjct: 245 SLIRSF 250 >gi|259908768|ref|YP_002649124.1| flagellar biosynthesis protein FliP [Erwinia pyrifoliae Ep1/96] gi|224964390|emb|CAX55899.1| Flagellar biosynthesis protein [Erwinia pyrifoliae Ep1/96] gi|283478744|emb|CAY74660.1| Flagellar biosynthetic protein FliP precursor [Erwinia pyrifoliae DSM 12163] gi|310767334|gb|ADP12284.1| flagellar biosynthesis protein FliP [Erwinia sp. Ejp617] Length = 245 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 98/247 (39%), Positives = 152/247 (61%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 M R L + + L +++ P +W V+T T L+ P +L+M Sbjct: 1 MKRLIPLLLPALLMLAPNVYAQLPGLVSQPTANGGQSWSLPVQTLVFITSLTFLPAILLM 60 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIVF +LR +G S PPN V++ L+LF+TF++M P D+ QP ++ Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLSLFLTFFIMGPVFDKMYTDAYQPFSEDK 120 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ AI + A+P FM TRE DL+LF +A++ I + + RIL+P+++ Sbjct: 121 ISMQEAIDKGAQPLREFMLRQTREADLALFARLANTP----PIAGPEAVPMRILLPAYVT 176 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV Sbjct: 177 SELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236 Query: 239 ENLVKSF 245 +L +SF Sbjct: 237 SSLAQSF 243 >gi|188534130|ref|YP_001907927.1| flagellar biosynthesis protein FliP [Erwinia tasmaniensis Et1/99] gi|188029172|emb|CAO97044.1| Flagellar biosynthesis protein [Erwinia tasmaniensis Et1/99] Length = 245 Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 98/247 (39%), Positives = 152/247 (61%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 M R L + + L +++ P +W V+T T L+ P +L+M Sbjct: 1 MKRLFPLLLPGLLMLAPNVYAQLPGLISQPMANGGQSWSLPVQTLVFITSLTFLPAILLM 60 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIVF +LR +G S PPN V++ L+LF+TF++M P D+ QP ++ Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLSLFLTFFIMGPVFDKIYTDAYQPFSEDK 120 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ AI + A+P FM TRE DL+LF +A++ I + + RIL+P+++ Sbjct: 121 ISMQEAIDKGAQPLREFMLRQTREADLALFARLANT----APIAGPEAVPMRILLPAYVT 176 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV Sbjct: 177 SELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236 Query: 239 ENLVKSF 245 +L +SF Sbjct: 237 GSLAQSF 243 >gi|218549273|ref|YP_002383064.1| flagellar biosynthesis protein FliP [Escherichia fergusonii ATCC 35469] gi|218356814|emb|CAQ89442.1| flagellar biosynthesis protein [Escherichia fergusonii ATCC 35469] Length = 245 Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 99/247 (40%), Positives = 154/247 (62%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 M R ++ A + L ++ P +W V+T T L+ P +L+M Sbjct: 1 MRRLLTLIPAILWLVTPCALAQLPGLVTQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP + Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ A+++ A+P FM TRE DL+LF +A++ I + + RIL+P+++ Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLALFARLANTG----PIQGPEAVPMRILLPAYVT 176 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236 Query: 239 ENLVKSF 245 +L +SF Sbjct: 237 GSLAQSF 243 >gi|260438790|ref|ZP_05792606.1| flagellar biosynthetic protein FliP [Butyrivibrio crossotus DSM 2876] gi|292808779|gb|EFF67984.1| flagellar biosynthetic protein FliP [Butyrivibrio crossotus DSM 2876] Length = 272 Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 94/215 (43%), Positives = 145/215 (67%), Gaps = 2/215 (0%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 + S +++ + T++++AP +LIM+T F R IIV R+ +G + PPN V++ L Sbjct: 59 GNGSDLASVLQILLVLTVIALAPSILIMLTSFTRIIIVLHFTRSAIGTQTAPPNQVLVGL 118 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 ALF+TF++M+PT + I+PL N+IT A +P FM T KD+ +F+D Sbjct: 119 ALFLTFFIMAPTFKTVYDDAIKPLSKNEITSEEAYDVGIKPIRQFMLEQTNTKDIRMFID 178 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 +A + + D I ++LIPSF++SELR +F IGFLI +PF+IIDM+V++ +M+MG Sbjct: 179 IAKVD--TSTLKDYDDIPIQVLIPSFIVSELRIAFIIGFLIYIPFIIIDMVVSSALMSMG 236 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMMLPPT+ISLPFK++ F++ DGW+L++ NLVK+F Sbjct: 237 MMMLPPTTISLPFKILLFIMADGWNLVIGNLVKTF 271 >gi|171057713|ref|YP_001790062.1| flagellar biosynthesis protein FliP [Leptothrix cholodnii SP-6] gi|170775158|gb|ACB33297.1| flagellar biosynthetic protein FliP [Leptothrix cholodnii SP-6] Length = 262 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 97/245 (39%), Positives = 148/245 (60%), Gaps = 4/245 (1%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 M+ + + A ++L ++ + + ++T FT LS P +L+M+T Sbjct: 20 MLGLTVISAWPAVALAQGAPAALPLMVGQGGSGTTFSVPIQTLLFFTALSFLPAVLLMMT 79 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R +IV +LR +G + PPN VI+ L+LF+TF+VM+PTLDR +P NQI Sbjct: 80 GFTRIVIVLGLLRQALGTQAAPPNQVIVGLSLFLTFFVMAPTLDRVYADAYKPYAANQIG 139 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 AI R P FM TR+ DL+LF +A K++ R+L+P+F+ SE Sbjct: 140 FEEAIARGEVPMRQFMLKQTRQSDLALFARLAKL----DPAVKSEQAPLRVLVPAFVTSE 195 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +F+IGFLI +PFL+IDM+VA+++M++GMMML P ++LPFK++ FVL DGW+LL+ + Sbjct: 196 LKSAFQIGFLIFIPFLVIDMVVASVLMSLGMMMLSPVLVALPFKLMLFVLADGWNLLLGS 255 Query: 241 LVKSF 245 L SF Sbjct: 256 LAASF 260 >gi|218689943|ref|YP_002398155.1| flagellar biosynthesis protein FliP [Escherichia coli ED1a] gi|300818632|ref|ZP_07098840.1| flagellar biosynthetic protein FliP [Escherichia coli MS 107-1] gi|218427507|emb|CAR08402.2| flagellar biosynthesis protein [Escherichia coli ED1a] gi|300528804|gb|EFK49866.1| flagellar biosynthetic protein FliP [Escherichia coli MS 107-1] Length = 245 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 100/247 (40%), Positives = 154/247 (62%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 M R A L+ A + L + + P +W V+T T L+ P +L+M Sbjct: 1 MRRLLSIAPVLLWLVTPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP + Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ A+++ A+P FM TRE DL LF +A++ + + + RIL+P+++ Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVT 176 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236 Query: 239 ENLVKSF 245 +L +SF Sbjct: 237 GSLAQSF 243 >gi|170019719|ref|YP_001724673.1| flagellar biosynthesis protein FliP [Escherichia coli ATCC 8739] gi|187730211|ref|YP_001879727.1| flagellar biosynthesis protein FliP [Shigella boydii CDC 3083-94] gi|209919370|ref|YP_002293454.1| flagellar biosynthesis protein FliP [Escherichia coli SE11] gi|218705441|ref|YP_002412960.1| flagellar biosynthesis protein FliP [Escherichia coli UMN026] gi|260855923|ref|YP_003229814.1| flagellar biosynthesis protein FliP [Escherichia coli O26:H11 str. 11368] gi|260868541|ref|YP_003234943.1| flagellar biosynthesis protein FliP [Escherichia coli O111:H- str. 11128] gi|293405431|ref|ZP_06649423.1| flagellar biosynthetic protein fliP [Escherichia coli FVEC1412] gi|298381075|ref|ZP_06990674.1| flagellar biosynthetic protein fliP [Escherichia coli FVEC1302] gi|300822282|ref|ZP_07102423.1| flagellar biosynthetic protein FliP [Escherichia coli MS 119-7] gi|300899205|ref|ZP_07117481.1| flagellar biosynthetic protein FliP [Escherichia coli MS 198-1] gi|300904838|ref|ZP_07122664.1| flagellar biosynthetic protein FliP [Escherichia coli MS 84-1] gi|300931161|ref|ZP_07146508.1| flagellar biosynthetic protein FliP [Escherichia coli MS 187-1] gi|300951573|ref|ZP_07165406.1| flagellar biosynthetic protein FliP [Escherichia coli MS 116-1] gi|300956536|ref|ZP_07168818.1| flagellar biosynthetic protein FliP [Escherichia coli MS 175-1] gi|301018202|ref|ZP_07182717.1| flagellar biosynthetic protein FliP [Escherichia coli MS 69-1] gi|301304257|ref|ZP_07210372.1| flagellar biosynthetic protein FliP [Escherichia coli MS 124-1] gi|301327735|ref|ZP_07220940.1| flagellar biosynthetic protein FliP [Escherichia coli MS 78-1] gi|301644593|ref|ZP_07244582.1| flagellar biosynthetic protein FliP [Escherichia coli MS 146-1] gi|307312466|ref|ZP_07592100.1| flagellar biosynthetic protein FliP [Escherichia coli W] gi|312967145|ref|ZP_07781363.1| flagellar biosynthetic protein FliP [Escherichia coli 2362-75] gi|331668639|ref|ZP_08369487.1| flagellar biosynthetic protein FliP [Escherichia coli TA271] gi|331673461|ref|ZP_08374229.1| flagellar biosynthetic protein FliP [Escherichia coli TA280] gi|169754647|gb|ACA77346.1| flagellar biosynthetic protein FliP [Escherichia coli ATCC 8739] gi|187427203|gb|ACD06477.1| flagellar biosynthetic protein FliP [Shigella boydii CDC 3083-94] gi|209912629|dbj|BAG77703.1| flagellar biosynthetic protein FliP [Escherichia coli SE11] gi|218432538|emb|CAR13431.1| flagellar biosynthesis protein [Escherichia coli UMN026] gi|257754572|dbj|BAI26074.1| flagellar biosynthesis protein FliP [Escherichia coli O26:H11 str. 11368] gi|257764897|dbj|BAI36392.1| flagellar biosynthesis protein FliP [Escherichia coli O111:H- str. 11128] gi|291427639|gb|EFF00666.1| flagellar biosynthetic protein fliP [Escherichia coli FVEC1412] gi|298278517|gb|EFI20031.1| flagellar biosynthetic protein fliP [Escherichia coli FVEC1302] gi|300316636|gb|EFJ66420.1| flagellar biosynthetic protein FliP [Escherichia coli MS 175-1] gi|300357186|gb|EFJ73056.1| flagellar biosynthetic protein FliP [Escherichia coli MS 198-1] gi|300399789|gb|EFJ83327.1| flagellar biosynthetic protein FliP [Escherichia coli MS 69-1] gi|300403265|gb|EFJ86803.1| flagellar biosynthetic protein FliP [Escherichia coli MS 84-1] gi|300449200|gb|EFK12820.1| flagellar biosynthetic protein FliP [Escherichia coli MS 116-1] gi|300461018|gb|EFK24511.1| flagellar biosynthetic protein FliP [Escherichia coli MS 187-1] gi|300525165|gb|EFK46234.1| flagellar biosynthetic protein FliP [Escherichia coli MS 119-7] gi|300840514|gb|EFK68274.1| flagellar biosynthetic protein FliP [Escherichia coli MS 124-1] gi|300845735|gb|EFK73495.1| flagellar biosynthetic protein FliP [Escherichia coli MS 78-1] gi|301077068|gb|EFK91874.1| flagellar biosynthetic protein FliP [Escherichia coli MS 146-1] gi|306907637|gb|EFN38140.1| flagellar biosynthetic protein FliP [Escherichia coli W] gi|309702237|emb|CBJ01554.1| flagellar biosynthetic protein FliP [Escherichia coli ETEC H10407] gi|312288609|gb|EFR16511.1| flagellar biosynthetic protein FliP [Escherichia coli 2362-75] gi|315061248|gb|ADT75575.1| flagellar biosynthesis protein [Escherichia coli W] gi|315257220|gb|EFU37188.1| flagellar biosynthetic protein FliP [Escherichia coli MS 85-1] gi|323152721|gb|EFZ38993.1| flagellar biosynthetic protein FliP [Escherichia coli EPECa14] gi|323180799|gb|EFZ66339.1| flagellar biosynthetic protein FliP [Escherichia coli 1180] gi|323378175|gb|ADX50443.1| flagellar biosynthetic protein FliP [Escherichia coli KO11] gi|323937218|gb|EGB33498.1| flagellar biosynthetic protein FliP [Escherichia coli E1520] gi|323940393|gb|EGB36584.1| flagellar biosynthetic protein FliP [Escherichia coli E482] gi|323968364|gb|EGB63771.1| flagellar biosynthetic protein FliP [Escherichia coli M863] gi|323977871|gb|EGB72957.1| flagellar biosynthetic protein FliP [Escherichia coli TW10509] gi|324118997|gb|EGC12886.1| flagellar biosynthetic protein FliP [Escherichia coli E1167] gi|327253080|gb|EGE64734.1| flagellar biosynthetic protein FliP [Escherichia coli STEC_7v] gi|331063833|gb|EGI35744.1| flagellar biosynthetic protein FliP [Escherichia coli TA271] gi|331069659|gb|EGI41046.1| flagellar biosynthetic protein FliP [Escherichia coli TA280] gi|332093095|gb|EGI98159.1| flagellar biosynthetic protein FliP [Shigella boydii 5216-82] Length = 245 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 100/247 (40%), Positives = 154/247 (62%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 M R A L+ A + L + + P +W V+T T L+ P +L+M Sbjct: 1 MRRLLSVAPVLLWLVTPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP + Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ A+++ A+P FM TRE DL LF +A++ + + + RIL+P+++ Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVT 176 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236 Query: 239 ENLVKSF 245 +L +SF Sbjct: 237 GSLAQSF 243 >gi|269139497|ref|YP_003296198.1| flagellar biosynthesis pathway, component FliP [Edwardsiella tarda EIB202] gi|267985158|gb|ACY84987.1| flagellar biosynthesis pathway, component FliP [Edwardsiella tarda EIB202] gi|304559386|gb|ADM42050.1| Flagellar biosynthesis protein FliP [Edwardsiella tarda FL6-60] Length = 246 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 96/224 (42%), Positives = 146/224 (65%), Gaps = 6/224 (2%) Query: 24 HDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 +++ P +W V+T T LS P L+++T F R IIV +LR +G S Sbjct: 25 PGIISQPLAHGGQSWSLPVQTLVFLTSLSFLPAALLLMTSFTRIIIVLGLLRNALGTPSA 84 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PPN V++ LALF+TF++MSP LD+ + QP +I+ TA+ R A+P FM TR Sbjct: 85 PPNQVLLGLALFLTFFIMSPVLDKIYQDAYQPFSEQKISMETALDRGAKPLRAFMLRQTR 144 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 E DL+LF +A ++ + + RIL+P+++ SEL+ +F+IGF + +PFLIID++ Sbjct: 145 ETDLALFSRLAKQP----EMQGPEDVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLV 200 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 201 VASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 244 >gi|168244830|ref|ZP_02669762.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194448965|ref|YP_002046030.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|238912448|ref|ZP_04656285.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|194407269|gb|ACF67488.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205336386|gb|EDZ23150.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 245 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 101/247 (40%), Positives = 156/247 (63%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 M R F +L + A + L +++ P +W V+T T L+ P +L+M Sbjct: 1 MRRLLFLSLAGLWFFSPAAAAQLPGLISQPLAGGGQSWSLSVQTLVFITSLTFLPAILLM 60 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP + Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK 120 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ A+ + A+P FM TRE DL+LF +A+S + + + RIL+P+++ Sbjct: 121 ISMQEALDKGAQPLRAFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVT 176 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236 Query: 239 ENLVKSF 245 +L +SF Sbjct: 237 GSLAQSF 243 >gi|170741215|ref|YP_001769870.1| flagellar biosynthesis protein FliP [Methylobacterium sp. 4-46] gi|168195489|gb|ACA17436.1| flagellar biosynthetic protein FliP [Methylobacterium sp. 4-46] Length = 262 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 123/221 (55%), Positives = 166/221 (75%), Gaps = 2/221 (0%) Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84 D + P + + S I++ + T+LS+AP LL+MVT F RF++ S LR+G+G+ S P N Sbjct: 43 DALLPPGNGAASGRIIQMVALLTVLSVAPGLLVMVTSFTRFVVALSFLRSGLGLQSTPAN 102 Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144 L ++SL+LFMTFYVM+PT DR+ + G++PL N+I+E A +V +PF FM+++ REKD Sbjct: 103 LFMVSLSLFMTFYVMAPTFDRAWQEGVRPLTENRISEEDAFGKVVDPFREFMQSHVREKD 162 Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204 L F D+A + + + ++ RILIP+FMISELRR FEIGFLI LPFL+IDMIVAT Sbjct: 163 LQTFADLASRNFPKAEAG--EKVDLRILIPAFMISELRRGFEIGFLIALPFLVIDMIVAT 220 Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +VM+MGMMMLPPT ISLPFKV+FFVLIDGW+LLV LV+S+ Sbjct: 221 VVMSMGMMMLPPTVISLPFKVLFFVLIDGWNLLVSGLVRSY 261 >gi|170743261|ref|YP_001771916.1| flagellar biosynthetic protein FliP [Methylobacterium sp. 4-46] gi|168197535|gb|ACA19482.1| flagellar biosynthetic protein FliP [Methylobacterium sp. 4-46] Length = 283 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 101/229 (44%), Positives = 162/229 (70%), Gaps = 4/229 (1%) Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 A + +++ ++ ++ + T+L++AP +L+M T F R ++V SILR+ + Sbjct: 57 ATAGLAQSVTVDLGPSGGVTERALQLVALITVLALAPSVLVMATAFTRIVVVLSILRSAL 116 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G + PPN VI+SLALF+T +VM+PT + GI+PL+ QI+++ A +R ++PF FM Sbjct: 117 GTQTAPPNAVIVSLALFLTAFVMAPTAREAYRTGIEPLVAGQISQSQAFERASQPFKAFM 176 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 + REKDL LF+D++++ T + + IL P+FMISELRR+FEIGFL+ +PFL Sbjct: 177 LRSVREKDLRLFLDLSNAPRPAT----PEAVGLEILTPAFMISELRRAFEIGFLLFIPFL 232 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IID++VA+++M++GMMMLPP +++LPFK+IFFVL+DGW+L+ +LV+S+ Sbjct: 233 IIDLVVASVLMSVGMMMLPPATVALPFKLIFFVLVDGWTLVAGSLVQSY 281 >gi|114706620|ref|ZP_01439521.1| flagellar biosynthesis protein P [Fulvimarina pelagi HTCC2506] gi|114538012|gb|EAU41135.1| flagellar biosynthesis protein P [Fulvimarina pelagi HTCC2506] Length = 264 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 139/245 (56%), Positives = 175/245 (71%), Gaps = 7/245 (2%) Query: 7 FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66 F L V + SSL D++ D +IS I++ FGI T+LSIAP LL+MVT F R + Sbjct: 20 FGLGTVAQAQIADPSSLADLIPQ-GDGTISGRIIQLFGIVTVLSIAPGLLVMVTAFTRIV 78 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 I SI+RTG+G+ + P NL+IISLALFMTF+VMSPT DR+ G+QPL+ N+I E A Sbjct: 79 IALSIMRTGLGLQTTPANLIIISLALFMTFFVMSPTFDRAWNDGLQPLLENEIDEEEAFY 138 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND------HIEYRILIPSFMISE 180 R+A+PF FM R DL LF D+A + R+ + IE R+LIP+FMISE Sbjct: 139 RIADPFKEFMLTQVRPSDLQLFGDIASVTDRDRVQPEEQGAADERDIELRVLIPAFMISE 198 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 LRR FEIGFLI+LPFL+IDMIVAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW+LLV + Sbjct: 199 LRRGFEIGFLIVLPFLVIDMIVATLTMSMGMMMLPPTIISLPFKILFFVLIDGWNLLVGS 258 Query: 241 LVKSF 245 LV+SF Sbjct: 259 LVRSF 263 >gi|325497690|gb|EGC95549.1| flagellar biosynthesis protein FliP [Escherichia fergusonii ECD227] Length = 245 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 99/247 (40%), Positives = 154/247 (62%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 M R ++ A + L ++ P +W V+T T L+ P +L+M Sbjct: 1 MRRLLTLIPAMLWLVTPCALAQLPGLVTQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP + Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ A+++ A+P FM TRE DL+LF +A++ I + + RIL+P+++ Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLALFARLANTG----PIQGPEAVPMRILLPAYVT 176 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236 Query: 239 ENLVKSF 245 +L +SF Sbjct: 237 GSLAQSF 243 >gi|283832657|ref|ZP_06352398.1| flagellar biosynthetic protein FliP [Citrobacter youngae ATCC 29220] gi|291072331|gb|EFE10440.1| flagellar biosynthetic protein FliP [Citrobacter youngae ATCC 29220] Length = 245 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 100/247 (40%), Positives = 158/247 (63%), Gaps = 9/247 (3%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 ++ L+L +P A + L +++ P +W V+T T L+ P +L+M Sbjct: 4 LLSITLAGLWLFSP---VALAQLPGLVSQPLPGGGQSWSLPVQTLVFITSLTFLPAILLM 60 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP + Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ A+++ A+P FM TRE DL+LF +A+S + + + RIL+P+++ Sbjct: 121 ISMQEAMEKGAQPLREFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVT 176 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236 Query: 239 ENLVKSF 245 +L +SF Sbjct: 237 GSLAQSF 243 >gi|13472582|ref|NP_104149.1| flagellar biosynthesis protein FliP [Mesorhizobium loti MAFF303099] gi|14023328|dbj|BAB49935.1| flagellar biosynthesis protein; FliP [Mesorhizobium loti MAFF303099] Length = 243 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 131/245 (53%), Positives = 180/245 (73%), Gaps = 3/245 (1%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 M ++ A + V A L AD + +I++ FG+ T+LS+AP LLIMVT Sbjct: 1 MKKFLLAAALIGAATSVAAAQQLDLGGIGKADGATVGYIIQMFGLLTVLSVAPGLLIMVT 60 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F RF+I FSILR G+G+ S P NL++ISL+LFMTFYVM+PT D++ G++PLM+NQI+ Sbjct: 61 SFTRFVIAFSILRAGIGLQSTPANLILISLSLFMTFYVMAPTFDQAWNTGVKPLMDNQIS 120 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 +T A +++++PF FM +N R+KD LF D+A + + + ++ RIL+P+FMISE Sbjct: 121 QTEAFEKISDPFRTFMLHNVRDKDFDLFADLARERGQ---VVAKETVDLRILVPAFMISE 177 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 +RR FEIGFLI+LPFL+ID+IVATI MAMGMMMLPPT +SLPFK++FFVLIDGW+LLV + Sbjct: 178 IRRGFEIGFLIVLPFLVIDLIVATITMAMGMMMLPPTVVSLPFKILFFVLIDGWNLLVGS 237 Query: 241 LVKSF 245 LV+SF Sbjct: 238 LVRSF 242 >gi|16125203|ref|NP_419767.1| flagellar biosynthesis protein FliP [Caulobacter crescentus CB15] gi|221233939|ref|YP_002516375.1| flagellar biosynthesis protein FliP [Caulobacter crescentus NA1000] gi|2494562|sp|Q45980|FLIP_CAUCR RecName: Full=Flagellar biosynthetic protein fliP gi|841253|gb|AAA86882.1| FliP [Caulobacter crescentus CB15] gi|13422227|gb|AAK22935.1| flagellar biosynthesis protein FliP [Caulobacter crescentus CB15] gi|220963111|gb|ACL94467.1| flagellar biosyntheis protein FliP [Caulobacter crescentus NA1000] Length = 266 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 104/245 (42%), Positives = 161/245 (65%), Gaps = 6/245 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 +I + P A+S+++ +N+ ++ +V+ G+ T+LS+AP ++IM T Sbjct: 22 IISVLAAIACAIMPAAAMAQSAVN--INLGTGAGLTERVVQLVGLMTVLSLAPSIVIMTT 79 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R ++V +LRT +G+ PPN V+ISLALF+T VM+PT +RS + GI+PL++ Q+ Sbjct: 80 SFVRIVVVLGLLRTAIGVQQSPPNPVLISLALFLTAIVMAPTFERSYDAGIKPLLDQQME 139 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A + + P FM + DL+LF+ ++ T R++ P+FMISE Sbjct: 140 LPEAFEAASGPVKQFMLSQVDRDDLALFVRLSKIPQPRTAA----ETPLRVVTPAFMISE 195 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+R+FEIGFL+ +PFL+ID++VA+++M+MGMMMLPP SISLPFK+IFFVL+DGW L+ + Sbjct: 196 LKRAFEIGFLLFIPFLVIDLVVASVLMSMGMMMLPPASISLPFKLIFFVLVDGWRLVAGS 255 Query: 241 LVKSF 245 LV+SF Sbjct: 256 LVESF 260 >gi|16760923|ref|NP_456540.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141385|ref|NP_804727.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62180554|ref|YP_216971.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161502899|ref|YP_001570011.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|167552788|ref|ZP_02346539.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168234152|ref|ZP_02659210.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168239219|ref|ZP_02664277.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168462479|ref|ZP_02696410.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168823022|ref|ZP_02835022.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444637|ref|YP_002041244.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194468817|ref|ZP_03074801.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194737682|ref|YP_002115013.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197247593|ref|YP_002146044.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197264056|ref|ZP_03164130.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198244709|ref|YP_002215107.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200391063|ref|ZP_03217674.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204931035|ref|ZP_03221861.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|207856508|ref|YP_002243159.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213023112|ref|ZP_03337559.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213163376|ref|ZP_03349086.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213417182|ref|ZP_03350326.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213424995|ref|ZP_03357745.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213584779|ref|ZP_03366605.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213650743|ref|ZP_03380796.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855268|ref|ZP_03383508.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224583522|ref|YP_002637320.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|25316655|pir||AD0753 flagellar biosynthetic protein FliP [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503220|emb|CAD05727.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Typhi] gi|29137012|gb|AAO68576.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62128187|gb|AAX65890.1| flagellar biosynthesis [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|160864246|gb|ABX20869.1| hypothetical protein SARI_00958 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|194403300|gb|ACF63522.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194455181|gb|EDX44020.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194713184|gb|ACF92405.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195634044|gb|EDX52396.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197211296|gb|ACH48693.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197242311|gb|EDY24931.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197288073|gb|EDY27460.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197939225|gb|ACH76558.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603508|gb|EDZ02054.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320079|gb|EDZ05284.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205322623|gb|EDZ10462.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205331887|gb|EDZ18651.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205340666|gb|EDZ27430.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206708311|emb|CAR32614.1| flagellar biosynthetic protein flip precursor [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224468049|gb|ACN45879.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|320085402|emb|CBY95183.1| Flagellar biosynthetic protein fliP Flagellar biosynthetic protein mopC [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322715030|gb|EFZ06601.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|326622855|gb|EGE29200.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 245 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 101/247 (40%), Positives = 156/247 (63%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 M R F +L + A + L +++ P +W V+T T L+ P +L+M Sbjct: 1 MRRLLFLSLAGLWLFSPAAAAQLPGLISQPLAGGGQSWSLSVQTLVFITSLTFLPAILLM 60 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP + Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK 120 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ A+ + A+P FM TRE DL+LF +A+S + + + RIL+P+++ Sbjct: 121 ISMQEALDKGAQPLRAFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVT 176 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236 Query: 239 ENLVKSF 245 +L +SF Sbjct: 237 GSLAQSF 243 >gi|205352327|ref|YP_002226128.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272108|emb|CAR36961.1| flagellar biosynthetic protein flip precursor [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326627377|gb|EGE33720.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 245 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 100/247 (40%), Positives = 156/247 (63%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIM 58 M R F +L + A + L +++ P +W + +T T L+ P +L+M Sbjct: 1 MRRLLFLSLAGLWLFSPAAAAQLPGLISQPLAGGGQSWSLSAQTLVFITSLTFLPAILLM 60 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP + Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK 120 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ A+ + A+P FM TRE DL+LF +A+S + + + RIL+P+++ Sbjct: 121 ISMQEALDKGAQPLRAFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVT 176 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236 Query: 239 ENLVKSF 245 +L +SF Sbjct: 237 GSLAQSF 243 >gi|294636880|ref|ZP_06715210.1| flagellar biosynthetic protein FliP [Edwardsiella tarda ATCC 23685] gi|291089910|gb|EFE22471.1| flagellar biosynthetic protein FliP [Edwardsiella tarda ATCC 23685] Length = 246 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 96/224 (42%), Positives = 147/224 (65%), Gaps = 6/224 (2%) Query: 24 HDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 +++ P +W V+T T LS P +L+++T F R IIV +LR +G S Sbjct: 25 PGIISQPLAHGGQSWSLPVQTLVFLTSLSFLPAVLLLMTSFTRIIIVLGLLRNALGTPSA 84 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PPN V++ LALF+TF++MSP LD+ + QP +I+ TA++R A+P FM TR Sbjct: 85 PPNQVLLGLALFLTFFIMSPVLDKIYQDAYQPFSEQKISMETALERGAKPLRAFMLRQTR 144 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 E DL+LF +A + + + RIL+P+++ SEL+ +F+IGF + +PFLIID++ Sbjct: 145 ETDLALFARLAKQPQ----MQGPEDVPLRILLPAYVTSELKTAFQIGFTVFIPFLIIDLV 200 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 201 VASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 244 >gi|238920321|ref|YP_002933836.1| flagellar biosynthetic protein FliP, [Edwardsiella ictaluri 93-146] gi|238869890|gb|ACR69601.1| flagellar biosynthetic protein FliP, putative [Edwardsiella ictaluri 93-146] Length = 246 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 96/224 (42%), Positives = 146/224 (65%), Gaps = 6/224 (2%) Query: 24 HDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 +++ P +W V+T T LS P L+++T F R IIV +LR +G S Sbjct: 25 PGIISQPLAHGGQSWSLPVQTLVFLTSLSFLPAALLLMTSFTRIIIVLGLLRNALGTPSA 84 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PPN V++ LALF+TF++MSP LD+ + QP +I+ TA+ R A+P FM TR Sbjct: 85 PPNQVLLGLALFLTFFIMSPVLDKIYQEAYQPFSEQKISMETALDRGAKPLRAFMLRQTR 144 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 E DL+LF +A ++ + + RIL+P+++ SEL+ +F+IGF + +PFLIID++ Sbjct: 145 ETDLALFSRLAKQP----EMQGPEDVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLV 200 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 201 VASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 244 >gi|215487148|ref|YP_002329579.1| flagellar biosynthesis protein FliP [Escherichia coli O127:H6 str. E2348/69] gi|215265220|emb|CAS09610.1| flagellar biosynthesis protein FliP [Escherichia coli O127:H6 str. E2348/69] Length = 245 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 99/247 (40%), Positives = 154/247 (62%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 M R A L+ A + L + + P +W V+T T L+ P +L+M Sbjct: 1 MRRLLSVAPVLLWLVTPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP + Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ A+++ A+P FM TRE DL +F +A++ + + + RIL+P+++ Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLGVFARLANTG----PLQGPEAVPMRILLPAYVT 176 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236 Query: 239 ENLVKSF 245 +L +SF Sbjct: 237 GSLAQSF 243 >gi|118443404|ref|YP_877989.1| flagellar biosynthesis protein FliP [Clostridium novyi NT] gi|118133860|gb|ABK60904.1| flagellar biosynthetic protein fliP [Clostridium novyi NT] Length = 257 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 93/248 (37%), Positives = 156/248 (62%), Gaps = 9/248 (3%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI------VRTFGIFTILSIAPILLI 57 FAL ++ +A + + I + ++ ++ + T++S+ P L+ Sbjct: 11 LVMFALAILGATKAYAAPNTIPIPKINVSVDQASSPKDYVDNIKLLIMLTVISLLPSFLV 70 Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 M+T F R I+V +R +G PPN +++ LALF+T ++M+PT + I+P + N Sbjct: 71 MMTSFTRIIVVLGFMRNALGTQQAPPNQILVGLALFLTIFIMTPTYKTINKEAIKPFLEN 130 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177 +IT+T A+ A+P FM TR+KDL LF+D++ + +N +++ ++IPSF+ Sbjct: 131 KITQTEALNNAAKPMREFMLKQTRDKDLELFLDVSKTDKKNI---TKENVPMYVVIPSFI 187 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 ISEL+ +F+IGFL+ +PFLIID++VA+++M+MGM MLPP ISLPFK++ FV++DGW LL Sbjct: 188 ISELKTAFKIGFLLFVPFLIIDIVVASVLMSMGMFMLPPVMISLPFKLLLFVMVDGWYLL 247 Query: 238 VENLVKSF 245 V++LV + Sbjct: 248 VKSLVMGY 255 >gi|15802383|ref|NP_288409.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H7 EDL933] gi|15831941|ref|NP_310714.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str. Sakai] gi|16129895|ref|NP_416458.1| flagellar biosynthesis protein [Escherichia coli str. K-12 substr. MG1655] gi|89108780|ref|AP_002560.1| flagellar biosynthesis protein [Escherichia coli str. K-12 substr. W3110] gi|157156523|ref|YP_001463250.1| flagellar biosynthesis protein FliP [Escherichia coli E24377A] gi|168751877|ref|ZP_02776899.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC4113] gi|168758262|ref|ZP_02783269.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC4401] gi|168764426|ref|ZP_02789433.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC4501] gi|168771555|ref|ZP_02796562.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC4486] gi|168777375|ref|ZP_02802382.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC4196] gi|168783345|ref|ZP_02808352.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC4076] gi|168790292|ref|ZP_02815299.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC869] gi|168802295|ref|ZP_02827302.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC508] gi|170081592|ref|YP_001730912.1| flagellar biosynthesis protein [Escherichia coli str. K-12 substr. DH10B] gi|170682430|ref|YP_001743297.1| flagellar biosynthesis protein FliP [Escherichia coli SMS-3-5] gi|191168304|ref|ZP_03030097.1| flagellar biosynthetic protein FliP [Escherichia coli B7A] gi|193066380|ref|ZP_03047428.1| flagellar biosynthetic protein FliP [Escherichia coli E22] gi|193071148|ref|ZP_03052072.1| flagellar biosynthetic protein FliP [Escherichia coli E110019] gi|194429937|ref|ZP_03062447.1| flagellar biosynthetic protein FliP [Escherichia coli B171] gi|194439571|ref|ZP_03071644.1| flagellar biosynthetic protein FliP [Escherichia coli 101-1] gi|195939254|ref|ZP_03084636.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str. EC4024] gi|208810650|ref|ZP_03252526.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC4206] gi|208816935|ref|ZP_03258055.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC4045] gi|208819585|ref|ZP_03259905.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC4042] gi|209400543|ref|YP_002271065.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC4115] gi|217328816|ref|ZP_03444897.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. TW14588] gi|218554528|ref|YP_002387441.1| flagellar biosynthesis protein FliP [Escherichia coli IAI1] gi|218695553|ref|YP_002403220.1| flagellar biosynthesis protein FliP [Escherichia coli 55989] gi|237705907|ref|ZP_04536388.1| flagellar biosynthetic protein fliP [Escherichia sp. 3_2_53FAA] gi|238901153|ref|YP_002926949.1| flagellar biosynthesis protein [Escherichia coli BW2952] gi|253773103|ref|YP_003035934.1| flagellar biosynthesis protein FliP [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254793598|ref|YP_003078435.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str. TW14359] gi|256017859|ref|ZP_05431724.1| flagellar biosynthesis protein FliP [Shigella sp. D9] gi|256022394|ref|ZP_05436259.1| flagellar biosynthesis protein FliP [Escherichia sp. 4_1_40B] gi|260844347|ref|YP_003222125.1| flagellar biosynthesis protein FliP [Escherichia coli O103:H2 str. 12009] gi|261227557|ref|ZP_05941838.1| flagellar biosynthesis protein [Escherichia coli O157:H7 str. FRIK2000] gi|261254619|ref|ZP_05947152.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str. FRIK966] gi|291283125|ref|YP_003499943.1| Flagellar biosynthetic protein fliP precursor [Escherichia coli O55:H7 str. CB9615] gi|293415258|ref|ZP_06657901.1| flagellar biosynthetic protein FliP [Escherichia coli B185] gi|293446328|ref|ZP_06662750.1| flagellar biosynthetic protein FliP [Escherichia coli B088] gi|300920167|ref|ZP_07136617.1| flagellar biosynthetic protein FliP [Escherichia coli MS 115-1] gi|300923889|ref|ZP_07139904.1| flagellar biosynthetic protein FliP [Escherichia coli MS 182-1] gi|301029405|ref|ZP_07192499.1| flagellar biosynthetic protein FliP [Escherichia coli MS 196-1] gi|307138615|ref|ZP_07497971.1| flagellar biosynthesis protein FliP [Escherichia coli H736] gi|309795945|ref|ZP_07690358.1| flagellar biosynthetic protein FliP [Escherichia coli MS 145-7] gi|312973835|ref|ZP_07788007.1| flagellar biosynthetic protein FliP [Escherichia coli 1827-70] gi|331642569|ref|ZP_08343704.1| flagellar biosynthetic protein FliP [Escherichia coli H736] gi|331677830|ref|ZP_08378505.1| flagellar biosynthetic protein FliP [Escherichia coli H591] gi|332278885|ref|ZP_08391298.1| flagellar biosynthesis protein [Shigella sp. D9] gi|81175289|sp|P0AC06|FLIP_ECO57 RecName: Full=Flagellar biosynthetic protein fliP; Flags: Precursor gi|81175290|sp|P0AC05|FLIP_ECOLI RecName: Full=Flagellar biosynthetic protein fliP; Flags: Precursor gi|12516055|gb|AAG56963.1|AE005417_5 flagellar biosynthesis [Escherichia coli O157:H7 str. EDL933] gi|347243|gb|AAC36859.1| flagellar protein [Escherichia coli] gi|1736614|dbj|BAA15773.1| flagellar biosynthesis protein [Escherichia coli str. K12 substr. W3110] gi|1788259|gb|AAC75015.1| flagellar biosynthesis protein [Escherichia coli str. K-12 substr. MG1655] gi|13362155|dbj|BAB36110.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. Sakai] gi|157078553|gb|ABV18261.1| flagellar biosynthetic protein FliP [Escherichia coli E24377A] gi|169889427|gb|ACB03134.1| flagellar biosynthesis protein [Escherichia coli str. K-12 substr. DH10B] gi|170520148|gb|ACB18326.1| flagellar biosynthetic protein FliP [Escherichia coli SMS-3-5] gi|187767404|gb|EDU31248.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC4196] gi|188014148|gb|EDU52270.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC4113] gi|188999261|gb|EDU68247.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC4076] gi|189354902|gb|EDU73321.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC4401] gi|189359722|gb|EDU78141.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC4486] gi|189365562|gb|EDU83978.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC4501] gi|189370182|gb|EDU88598.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC869] gi|189375715|gb|EDU94131.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC508] gi|190901676|gb|EDV61432.1| flagellar biosynthetic protein FliP [Escherichia coli B7A] gi|192925965|gb|EDV80611.1| flagellar biosynthetic protein FliP [Escherichia coli E22] gi|192955543|gb|EDV86022.1| flagellar biosynthetic protein FliP [Escherichia coli E110019] gi|194412026|gb|EDX28338.1| flagellar biosynthetic protein FliP [Escherichia coli B171] gi|194421480|gb|EDX37494.1| flagellar biosynthetic protein FliP [Escherichia coli 101-1] gi|208725166|gb|EDZ74873.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC4206] gi|208731278|gb|EDZ79967.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC4045] gi|208739708|gb|EDZ87390.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC4042] gi|209161943|gb|ACI39376.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC4115] gi|209766788|gb|ACI81706.1| flagellar biosynthetic protein FliP [Escherichia coli] gi|209766790|gb|ACI81707.1| flagellar biosynthetic protein FliP [Escherichia coli] gi|209766792|gb|ACI81708.1| flagellar biosynthetic protein FliP [Escherichia coli] gi|209766794|gb|ACI81709.1| flagellar biosynthetic protein FliP [Escherichia coli] gi|209766796|gb|ACI81710.1| flagellar biosynthetic protein FliP [Escherichia coli] gi|217318163|gb|EEC26590.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. TW14588] gi|218352285|emb|CAU98042.1| flagellar biosynthesis protein [Escherichia coli 55989] gi|218361296|emb|CAQ98880.1| flagellar biosynthesis protein [Escherichia coli IAI1] gi|226900664|gb|EEH86923.1| flagellar biosynthetic protein fliP [Escherichia sp. 3_2_53FAA] gi|238861098|gb|ACR63096.1| flagellar biosynthesis protein [Escherichia coli BW2952] gi|253324147|gb|ACT28749.1| flagellar biosynthetic protein FliP [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254592998|gb|ACT72359.1| flagellar biosynthesis protein [Escherichia coli O157:H7 str. TW14359] gi|257759494|dbj|BAI30991.1| flagellar biosynthesis protein FliP [Escherichia coli O103:H2 str. 12009] gi|260448939|gb|ACX39361.1| flagellar biosynthetic protein FliP [Escherichia coli DH1] gi|284921856|emb|CBG34931.1| flagellar biosynthetic protein FliP [Escherichia coli 042] gi|290762998|gb|ADD56959.1| Flagellar biosynthetic protein fliP precursor [Escherichia coli O55:H7 str. CB9615] gi|291323158|gb|EFE62586.1| flagellar biosynthetic protein FliP [Escherichia coli B088] gi|291432906|gb|EFF05885.1| flagellar biosynthetic protein FliP [Escherichia coli B185] gi|299877709|gb|EFI85920.1| flagellar biosynthetic protein FliP [Escherichia coli MS 196-1] gi|300412824|gb|EFJ96134.1| flagellar biosynthetic protein FliP [Escherichia coli MS 115-1] gi|300419852|gb|EFK03163.1| flagellar biosynthetic protein FliP [Escherichia coli MS 182-1] gi|308120395|gb|EFO57657.1| flagellar biosynthetic protein FliP [Escherichia coli MS 145-7] gi|310332430|gb|EFP99665.1| flagellar biosynthetic protein FliP [Escherichia coli 1827-70] gi|315136585|dbj|BAJ43744.1| flagellar biosynthetic protein fliP precursor [Escherichia coli DH1] gi|315286656|gb|EFU46089.1| flagellar biosynthetic protein FliP [Escherichia coli MS 110-3] gi|320191922|gb|EFW66569.1| Flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str. EC1212] gi|320198639|gb|EFW73239.1| Flagellar biosynthesis protein FliP [Escherichia coli EC4100B] gi|320641796|gb|EFX11184.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str. G5101] gi|320647155|gb|EFX15988.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H- str. 493-89] gi|320652439|gb|EFX20737.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H- str. H 2687] gi|320658041|gb|EFX25803.1| flagellar biosynthesis protein FliP [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658613|gb|EFX26307.1| flagellar biosynthesis protein FliP [Escherichia coli O55:H7 str. USDA 5905] gi|320668511|gb|EFX35338.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str. LSU-61] gi|323158573|gb|EFZ44587.1| flagellar biosynthetic protein FliP [Escherichia coli E128010] gi|323174672|gb|EFZ60292.1| flagellar biosynthetic protein FliP [Escherichia coli LT-68] gi|323183932|gb|EFZ69319.1| flagellar biosynthetic protein FliP [Escherichia coli 1357] gi|323948348|gb|EGB44335.1| flagellar biosynthetic protein FliP [Escherichia coli H120] gi|323956344|gb|EGB52087.1| flagellar biosynthetic protein FliP [Escherichia coli H263] gi|324018857|gb|EGB88076.1| flagellar biosynthetic protein FliP [Escherichia coli MS 117-3] gi|326342359|gb|EGD66140.1| Flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str. 1044] gi|326344863|gb|EGD68610.1| Flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str. 1125] gi|331039367|gb|EGI11587.1| flagellar biosynthetic protein FliP [Escherichia coli H736] gi|331074290|gb|EGI45610.1| flagellar biosynthetic protein FliP [Escherichia coli H591] gi|332101237|gb|EGJ04583.1| flagellar biosynthesis protein [Shigella sp. D9] Length = 245 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 100/247 (40%), Positives = 154/247 (62%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 M R A L+ A + L + + P +W V+T T L+ P +L+M Sbjct: 1 MRRLLSVAPVLLWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP + Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ A+++ A+P FM TRE DL LF +A++ + + + RIL+P+++ Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVT 176 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236 Query: 239 ENLVKSF 245 +L +SF Sbjct: 237 GSLAQSF 243 >gi|194434965|ref|ZP_03067208.1| flagellar biosynthetic protein FliP [Shigella dysenteriae 1012] gi|194416800|gb|EDX32926.1| flagellar biosynthetic protein FliP [Shigella dysenteriae 1012] gi|320182735|gb|EFW57619.1| Flagellar biosynthesis protein FliP [Shigella boydii ATCC 9905] gi|332095503|gb|EGJ00519.1| flagellar biosynthetic protein FliP [Shigella dysenteriae 155-74] Length = 245 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 100/245 (40%), Positives = 156/245 (63%), Gaps = 5/245 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 ++ L+L+TP L FA+ +P + V+T T L+ P +L+M+T Sbjct: 4 LLSVTPVLLWLITP-LAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMT 62 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ Sbjct: 63 SFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKIS 122 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A+++ A+P FM TRE DL LF +A++ + + + RIL+P+++ SE Sbjct: 123 MQEALEKGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSE 178 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV + Sbjct: 179 LKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGS 238 Query: 241 LVKSF 245 L +SF Sbjct: 239 LAQSF 243 >gi|89068716|ref|ZP_01156102.1| flagellar biosynthesis protein [Oceanicola granulosus HTCC2516] gi|89045679|gb|EAR51741.1| flagellar biosynthesis protein [Oceanicola granulosus HTCC2516] Length = 282 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 114/219 (52%), Positives = 157/219 (71%), Gaps = 7/219 (3%) Query: 35 ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFM 94 +S I++ + T+LS+AP LLI++T F RF+IVFSILR+ +G+ PPN+V+ S+ALFM Sbjct: 59 LSGRILQLIALITVLSLAPGLLIVMTSFTRFVIVFSILRSALGLNQTPPNVVLTSMALFM 118 Query: 95 TFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154 TF+VM P + + E G+QPLM+N ITE A++R+A+PF FM NTR DL LF ++A Sbjct: 119 TFFVMQPVFEDAWEDGLQPLMSNAITEEQAVERIADPFKTFMFANTRPVDLDLFREIAAR 178 Query: 155 SHRNT-------DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 + + +R L+P+FMISELRR+F IGFLI LPF+ ID+IVA+I+M Sbjct: 179 AGGDDAGAIELPPPETAADASWRELVPAFMISELRRAFTIGFLIFLPFIAIDLIVASILM 238 Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 + GMMMLPP ISLPFKVIFFVLIDGW +L +L++S++ Sbjct: 239 SAGMMMLPPVLISLPFKVIFFVLIDGWHMLAGSLIESYL 277 >gi|313895854|ref|ZP_07829408.1| flagellar biosynthetic protein FliP [Selenomonas sp. oral taxon 137 str. F0430] gi|312975279|gb|EFR40740.1| flagellar biosynthetic protein FliP [Selenomonas sp. oral taxon 137 str. F0430] Length = 255 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 95/224 (42%), Positives = 152/224 (67%), Gaps = 4/224 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 ++ + + ++ + T+LS+AP +LIM T F R ++V LR + +V Sbjct: 35 TVSLDVGTSENPQDVAASMQLLAVLTVLSLAPAMLIMTTSFVRIVVVIGFLRNALSTQNV 94 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PPN V+++L+LF+TFY+M+P ++ E GI+P ++ QIT+ A++ V EP FM + TR Sbjct: 95 PPNQVVLALSLFLTFYIMAPYWGQANENGIRPYLDGQITQEQALENVVEPMRDFMFHQTR 154 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 E DL+LF++++ + N D + LIP+F+ISEL+ +F+IGF+I +PF++IDMI Sbjct: 155 ESDLALFVNLSDAERPN----SPDDVSTFTLIPAFIISELKTAFQIGFMIYIPFIVIDMI 210 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 VA+ +M+MGMMMLPP ISLPFK++ FV++DGW LL+++L+ SF Sbjct: 211 VASTLMSMGMMMLPPVMISLPFKILLFVMVDGWHLLIQSLIMSF 254 >gi|283785718|ref|YP_003365583.1| flagellar biosynthetic protein FliP [Citrobacter rodentium ICC168] gi|282949172|emb|CBG88780.1| flagellar biosynthetic protein FliP [Citrobacter rodentium ICC168] Length = 245 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 98/245 (40%), Positives = 154/245 (62%), Gaps = 5/245 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 ++ L+L +P + A+ +P + V+T T L+ P +L+M+T Sbjct: 4 LLSLTLSGLWLFSP-VALAQLPGLVAQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMT 62 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ Sbjct: 63 SFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVEAYQPFSEEKIS 122 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A+ + A+P FM TRE DL+LF +A+S + + + RIL+P+++ SE Sbjct: 123 MQEALDKGAQPLREFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSE 178 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV + Sbjct: 179 LKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGS 238 Query: 241 LVKSF 245 L +SF Sbjct: 239 LAQSF 243 >gi|251789178|ref|YP_003003899.1| flagellar biosynthetic protein FliP [Dickeya zeae Ech1591] gi|247537799|gb|ACT06420.1| flagellar biosynthetic protein FliP [Dickeya zeae Ech1591] Length = 258 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 97/247 (39%), Positives = 159/247 (64%), Gaps = 8/247 (3%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 ++RY ++ L+ A+ L +++ P +W ++T T LS P +L+M Sbjct: 16 LLRYPAASILLLIAPHALAQ--LPGIISQPLANGGQSWSLPIQTLVFITALSFIPAVLLM 73 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +TCF R IIV S+LR +G + PPN V++ L+LF+TF+VMSP L+R + +P ++ Sbjct: 74 MTCFTRIIIVLSLLRNALGTPTAPPNQVLLGLSLFLTFFVMSPVLNRIYDEAYRPFSEDK 133 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ AI + ++P FM TRE DL+LF +A + + + R+L+P+++ Sbjct: 134 ISMEVAIDKGSQPLREFMLRQTREADLALFTRLAQIP----SLQGPEAVPMRVLVPAYVT 189 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF I +PFL+ID++VA+++MA+GMMM+PP +I+LPFK++ FVL+DGW LL+ Sbjct: 190 SELKTAFQIGFTIFIPFLLIDLVVASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLL 249 Query: 239 ENLVKSF 245 +L +SF Sbjct: 250 GSLAQSF 256 >gi|188492613|ref|ZP_02999883.1| flagellar biosynthetic protein FliP [Escherichia coli 53638] gi|188487812|gb|EDU62915.1| flagellar biosynthetic protein FliP [Escherichia coli 53638] Length = 245 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 100/247 (40%), Positives = 154/247 (62%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 M R A L+ A + L + + P +W V+T T L+ P +L+M Sbjct: 1 MRRLLSVAPVLLWLVTPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP + Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVNAYQPFSEEK 120 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ A+++ A+P FM TRE DL LF +A++ + + + RIL+P+++ Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVT 176 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236 Query: 239 ENLVKSF 245 +L +SF Sbjct: 237 GSLAQSF 243 >gi|221635440|ref|YP_002523316.1| flagellar biosynthetic protein FliP [Thermomicrobium roseum DSM 5159] gi|221158046|gb|ACM07164.1| flagellar biosynthetic protein FliP [Thermomicrobium roseum DSM 5159] Length = 271 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 86/206 (41%), Positives = 141/206 (68%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + + T++S+ P +LI++T F R +IV S +R+ +G+ +PPN V+I LALF+T +VM Sbjct: 67 LELVFLLTLVSLLPTILIVMTSFTRIVIVLSFVRSAIGVPQLPPNQVLIGLALFLTVFVM 126 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +PT +QP + +I + TA++R +P FM TRE+D++LFM + + T Sbjct: 127 APTWQAVNRDALQPYLRGEINQRTALERGLQPLRTFMFRQTRERDIALFMSLGNLPRPRT 186 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + +L+P+F++SEL+ +F +GF++ +PFL+ID+IV++ +MAMGM+M+PP I Sbjct: 187 ----PEDVPTWVLVPAFILSELKTAFTMGFVLFIPFLVIDLIVSSTLMAMGMIMVPPVVI 242 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FV++DGW LLV +LV SF Sbjct: 243 SLPFKLLLFVMVDGWDLLVRSLVVSF 268 >gi|187935306|ref|YP_001885056.1| flagellar biosynthetic protein FliP [Clostridium botulinum B str. Eklund 17B] gi|187723459|gb|ACD24680.1| flagellar biosynthetic protein FliP [Clostridium botulinum B str. Eklund 17B] Length = 259 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 90/206 (43%), Positives = 141/206 (68%), Gaps = 3/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ FTIL++ P ++IM+T F R +IVFS +++ MG+ PN ++ LALF+T ++M Sbjct: 56 IKILIFFTILAVLPSIVIMLTSFTRIVIVFSFIKSAMGVQQAIPNQILTGLALFLTIFIM 115 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP + QP + IT+ AI+ ++P FM TREKDL LF+++ + N Sbjct: 116 SPVYNEVNTKAFQPYVEQSITQEEAIEIGSKPIKDFMLKQTREKDLELFVEINNV---NK 172 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + + LIP+F ISEL+ +F++GFLI LPF++IDM+VA+++M+MGMMMLPP + Sbjct: 173 EELTRESVPFTTLIPAFAISELKTAFQMGFLIYLPFIVIDMVVASVLMSMGMMMLPPAMV 232 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FV++DGW LLV++L+ SF Sbjct: 233 SLPFKLLLFVMVDGWYLLVKSLIMSF 258 >gi|320529418|ref|ZP_08030506.1| flagellar biosynthetic protein FliP [Selenomonas artemidis F0399] gi|320138384|gb|EFW30278.1| flagellar biosynthetic protein FliP [Selenomonas artemidis F0399] Length = 255 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 95/224 (42%), Positives = 151/224 (67%), Gaps = 4/224 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 ++ + + ++ + T+LS+AP +LIM T F R ++V LR + +V Sbjct: 35 TVSLDVGTSENPQDVAASMQLLAVLTVLSLAPAMLIMTTSFVRIVVVIGFLRNALSTQNV 94 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PPN V+++L+LF+TFY+M+P ++ E GI+P ++ QIT+ A++ V EP FM TR Sbjct: 95 PPNQVVLALSLFLTFYIMAPYWGQANENGIRPYLDGQITQEQALENVVEPMRDFMFRQTR 154 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 E DL+LF++++ + N D + LIP+F+ISEL+ +F+IGF+I +PF++IDMI Sbjct: 155 ESDLALFVNLSDAERPN----SPDDVSTFTLIPAFIISELKTAFQIGFMIYIPFIVIDMI 210 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 VA+ +M+MGMMMLPP ISLPFK++ FV++DGW LL+++L+ SF Sbjct: 211 VASTLMSMGMMMLPPVMISLPFKILLFVMVDGWHLLIQSLIMSF 254 >gi|322616972|gb|EFY13880.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618211|gb|EFY15103.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625882|gb|EFY22701.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626334|gb|EFY23144.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632749|gb|EFY29494.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639091|gb|EFY35784.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640407|gb|EFY37063.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647232|gb|EFY43731.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649920|gb|EFY46341.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655528|gb|EFY51836.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660306|gb|EFY56544.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662987|gb|EFY59194.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668172|gb|EFY64331.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674069|gb|EFY70163.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675579|gb|EFY71653.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683010|gb|EFY79026.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686704|gb|EFY82682.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195408|gb|EFZ80588.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198064|gb|EFZ83181.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204464|gb|EFZ89470.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207554|gb|EFZ92502.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211007|gb|EFZ95867.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217539|gb|EGA02258.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220728|gb|EGA05172.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226685|gb|EGA10882.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231561|gb|EGA15674.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236004|gb|EGA20083.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240574|gb|EGA24617.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245466|gb|EGA29466.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247584|gb|EGA31535.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253953|gb|EGA37777.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255519|gb|EGA39280.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262117|gb|EGA45680.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266240|gb|EGA49730.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270651|gb|EGA54092.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 245 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 101/247 (40%), Positives = 156/247 (63%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 M R F +L + A + L +++ P +W V+T T L+ P +L+M Sbjct: 1 MRRLLFLSLAGLWLFSPTAAAQLPGLISQPLAGGGQSWSLSVQTLVFITSLTFLPAILLM 60 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP + Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK 120 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ A+ + A+P FM TRE DL+LF +A+S + + + RIL+P+++ Sbjct: 121 ISMQEALDKGAQPLRAFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVT 176 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236 Query: 239 ENLVKSF 245 +L +SF Sbjct: 237 GSLAQSF 243 >gi|150019068|ref|YP_001311322.1| flagellar biosynthetic protein FliP [Clostridium beijerinckii NCIMB 8052] gi|149905533|gb|ABR36366.1| flagellar biosynthetic protein FliP [Clostridium beijerinckii NCIMB 8052] Length = 259 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 97/225 (43%), Positives = 149/225 (66%), Gaps = 6/225 (2%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 S D + P D S ++ FTILS+ P ++IM+T F R ++VFS L++ MG+ Sbjct: 41 SFGDGNSTPQDYVSS---IKILIFFTILSLLPSIVIMMTSFTRIVVVFSFLKSAMGVQQA 97 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PN ++ LA+F+T ++M P + IQP + N+IT+ A + ++P FM TR Sbjct: 98 VPNQILTGLAIFLTLFIMQPVYNEVNTKAIQPYLENKITQDQAFEEASKPLKAFMLKQTR 157 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 EKDL LF+++ N +++ + LIP+F ISEL+ +F+IGFLI LPFL+IDM+ Sbjct: 158 EKDLELFVEIGGVDKEN---LTKENVSFTTLIPAFAISELKTAFQIGFLIYLPFLVIDMV 214 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 V++++M+MGM MLPPT +SLPFK+I FV++DGW LLV++L++SF+ Sbjct: 215 VSSVLMSMGMFMLPPTMVSLPFKLILFVMVDGWYLLVKSLIQSFM 259 >gi|238025697|ref|YP_002909928.1| flagellar biosynthesis protein FliP [Burkholderia glumae BGR1] gi|237874891|gb|ACR27224.1| Flagellar biosynthetic protein FliP [Burkholderia glumae BGR1] Length = 266 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 95/228 (41%), Positives = 146/228 (64%), Gaps = 6/228 (2%) Query: 20 KSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMG 77 + L + P +T+ V+T + T+LS P +++M+T F R IIV S++R +G Sbjct: 42 AAGLPAFNSSPGPNGGTTYSLSVQTMLLLTMLSFLPAIVLMMTSFTRIIIVLSLMRQALG 101 Query: 78 MGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMR 137 + PPN V++ LALF+T +VMSP +DR+ G +P + A+QR PF FM Sbjct: 102 TATTPPNQVLVGLALFLTLFVMSPVIDRAYNDGYKPFSAGTLPMDQAVQRGLAPFKTFML 161 Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197 TRE DL+LF +A + + + + +L+P+F+ SEL+ F+IGF I +PFLI Sbjct: 162 KQTREGDLALFAKIAKAP----AMQGPEDVPLPLLVPAFVTSELKTGFQIGFTIFIPFLI 217 Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ID++VA+++M+MGMMM+ PT+ISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 218 IDLVVASVLMSMGMMMVSPTTISLPFKLMLFVLVDGWQLLIGSLAQSF 265 >gi|33601555|ref|NP_889115.1| flagellar biosynthesis protein FliP [Bordetella bronchiseptica RB50] gi|33575991|emb|CAE33071.1| flagellar biosynthetic protein FliP [Bordetella bronchiseptica RB50] Length = 263 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 101/236 (42%), Positives = 147/236 (62%), Gaps = 6/236 (2%) Query: 12 VTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVF 69 + P A+++L + P T+ + +T + T LS P L+M+T F R IIV Sbjct: 30 LWPSGALAQATLPALTATPGPNGSETYSLSMQTLLLMTSLSFLPAALLMMTGFTRIIIVL 89 Query: 70 SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129 +LR+ MG PPN V+I LALF+TFY MSP D+ QPL I TA++R Sbjct: 90 GLLRSAMGTAMSPPNHVLIGLALFLTFYTMSPVFDKIYTDAYQPLAAGSIPFETAVERAG 149 Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189 P FM + TRE DL+LF ++A+ + + RILIP+F+ SEL+ +F+IGF Sbjct: 150 SPLHNFMLHQTRENDLTLFANLANLP----AMEDPSQVPMRILIPAFITSELKTAFQIGF 205 Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 I +PFLIID++VA+++MA+GMMM+PP +++LPFK++ FVL DGW LL+ +L +SF Sbjct: 206 TIFIPFLIIDLVVASVLMALGMMMVPPVTVALPFKLMLFVLADGWHLLLGSLAQSF 261 >gi|75675323|ref|YP_317744.1| flagellar biosynthesis protein FliP [Nitrobacter winogradskyi Nb-255] gi|74420193|gb|ABA04392.1| Flagellar transport protein FliP [Nitrobacter winogradskyi Nb-255] Length = 251 Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats. Identities = 112/245 (45%), Positives = 165/245 (67%), Gaps = 6/245 (2%) Query: 3 RYCFFALFLVTPELV--FAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 R FF + + L + + + ++ ++ + T+LSIAP +LIM+T Sbjct: 9 RVSFFLILITAGSLTDPALAQDISINLGGAGNGGVTERAIQLIALLTVLSIAPSILIMMT 68 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R ++V S+LRT +G + PPN VII+LA+F+T +VM PTL +S + GI+PL+ N+ T Sbjct: 69 SFTRIVVVLSLLRTALGTATAPPNSVIIALAMFLTAFVMGPTLQKSYDEGIKPLVANETT 128 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A+QR + P FM+ N RE+DL LFMD++ T + RIL+P+FMISE Sbjct: 129 VEEALQRASVPLRGFMQKNVREQDLKLFMDLSGEPPPATPA----DLSLRILMPAFMISE 184 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+R+FEIGFL+ LPFLIID++VA+++M+MGMMMLPP +SLPFK+IFFVL+DGW+L+ + Sbjct: 185 LKRAFEIGFLLFLPFLIIDLVVASVLMSMGMMMLPPVVVSLPFKLIFFVLVDGWALVAGS 244 Query: 241 LVKSF 245 LV+S+ Sbjct: 245 LVQSY 249 >gi|26248217|ref|NP_754257.1| flagellar biosynthesis protein FliP [Escherichia coli CFT073] gi|110642054|ref|YP_669784.1| flagellar biosynthesis protein FliP [Escherichia coli 536] gi|110805917|ref|YP_689437.1| flagellar biosynthesis protein FliP [Shigella flexneri 5 str. 8401] gi|161485898|ref|NP_707833.2| flagellar biosynthesis protein FliP [Shigella flexneri 2a str. 301] gi|191173282|ref|ZP_03034812.1| flagellar biosynthetic protein FliP [Escherichia coli F11] gi|218699491|ref|YP_002407120.1| flagellar biosynthesis protein FliP [Escherichia coli IAI39] gi|227885623|ref|ZP_04003428.1| flagellar biosynthesis protein FliP [Escherichia coli 83972] gi|300940403|ref|ZP_07154988.1| flagellar biosynthetic protein FliP [Escherichia coli MS 21-1] gi|300975537|ref|ZP_07173048.1| flagellar biosynthetic protein FliP [Escherichia coli MS 45-1] gi|301050691|ref|ZP_07197552.1| flagellar biosynthetic protein FliP [Escherichia coli MS 185-1] gi|306814229|ref|ZP_07448395.1| flagellar biosynthesis protein FliP [Escherichia coli NC101] gi|331647542|ref|ZP_08348634.1| flagellar biosynthetic protein FliP [Escherichia coli M605] gi|26108621|gb|AAN80824.1|AE016762_77 Flagellar biosynthetic protein fliP precursor [Escherichia coli CFT073] gi|110343646|gb|ABG69883.1| flagellar biosynthetic protein FliP precursor [Escherichia coli 536] gi|110615465|gb|ABF04132.1| flagellar biosynthetic protein FliP [Shigella flexneri 5 str. 8401] gi|190906399|gb|EDV66008.1| flagellar biosynthetic protein FliP [Escherichia coli F11] gi|218369477|emb|CAR17242.1| flagellar biosynthesis protein [Escherichia coli IAI39] gi|222033687|emb|CAP76428.1| flagellar biosynthetic protein fliP [Escherichia coli LF82] gi|227837196|gb|EEJ47662.1| flagellar biosynthesis protein FliP [Escherichia coli 83972] gi|281179010|dbj|BAI55340.1| flagellar biosynthetic protein FliP [Escherichia coli SE15] gi|300297614|gb|EFJ53999.1| flagellar biosynthetic protein FliP [Escherichia coli MS 185-1] gi|300410306|gb|EFJ93844.1| flagellar biosynthetic protein FliP [Escherichia coli MS 45-1] gi|300454797|gb|EFK18290.1| flagellar biosynthetic protein FliP [Escherichia coli MS 21-1] gi|305852388|gb|EFM52839.1| flagellar biosynthesis protein FliP [Escherichia coli NC101] gi|307553961|gb|ADN46736.1| flagellar biosynthetic protein FliP [Escherichia coli ABU 83972] gi|312946541|gb|ADR27368.1| flagellar biosynthesis protein FliP [Escherichia coli O83:H1 str. NRG 857C] gi|315290265|gb|EFU49643.1| flagellar biosynthetic protein FliP [Escherichia coli MS 153-1] gi|315296482|gb|EFU55779.1| flagellar biosynthetic protein FliP [Escherichia coli MS 16-3] gi|320194339|gb|EFW68970.1| Flagellar biosynthesis protein FliP [Escherichia coli WV_060327] gi|323186704|gb|EFZ72026.1| flagellar biosynthetic protein FliP [Escherichia coli RN587/1] gi|324005853|gb|EGB75072.1| flagellar biosynthetic protein FliP [Escherichia coli MS 57-2] gi|324013503|gb|EGB82722.1| flagellar biosynthetic protein FliP [Escherichia coli MS 60-1] gi|330911754|gb|EGH40264.1| flagellar biosynthesis protein FliP [Escherichia coli AA86] gi|331043266|gb|EGI15404.1| flagellar biosynthetic protein FliP [Escherichia coli M605] gi|333004053|gb|EGK23587.1| flagellar biosynthetic protein FliP [Shigella flexneri K-272] gi|333017826|gb|EGK37133.1| flagellar biosynthetic protein FliP [Shigella flexneri K-227] Length = 245 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 100/239 (41%), Positives = 154/239 (64%), Gaps = 5/239 (2%) Query: 7 FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66 L+L+TP L FA+ +P + V+T T L+ P +L+M+T F R I Sbjct: 10 VLLWLITP-LAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A++ Sbjct: 69 IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 + A+P FM TRE DL LF +A++ + + + RIL+P+++ SEL+ +F+ Sbjct: 129 KGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQ 184 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243 >gi|288958044|ref|YP_003448385.1| flagellar biosynthetic protein [Azospirillum sp. B510] gi|288910352|dbj|BAI71841.1| flagellar biosynthetic protein [Azospirillum sp. B510] Length = 266 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 117/244 (47%), Positives = 168/244 (68%), Gaps = 6/244 (2%) Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61 I + ++ A+S D+ + A + + IV+T G+ T+LS+AP +LIM+T Sbjct: 26 IGLALGLISGLSAGPALAQSLTFDLGD--AGGTATGRIVQTIGLITVLSLAPSILIMMTA 83 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F R +IV S LR +G+ VPP V++SLALF+TF+VM+P +RS GIQPLMN +I E Sbjct: 84 FTRIVIVLSFLRNALGVQQVPPTTVMMSLALFLTFFVMAPVFERSYTQGIQPLMNQEIDE 143 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 A +R P FM ++T EKDL LFMDMA R ++ + + + +L+P+FMISE+ Sbjct: 144 MEAFRRTVAPLRDFMLHHTAEKDLRLFMDMA----RLQNVQEPNDMPLHVLVPAFMISEI 199 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 +R FEIGFL+ LPFLIIDM+V++I+M+MGMMMLPPT +++PFK+IFFVL+DGW L+ +L Sbjct: 200 KRGFEIGFLLFLPFLIIDMVVSSILMSMGMMMLPPTMVAIPFKIIFFVLVDGWYLIAGSL 259 Query: 242 VKSF 245 +SF Sbjct: 260 ARSF 263 >gi|161613452|ref|YP_001587417.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168259734|ref|ZP_02681707.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|161362816|gb|ABX66584.1| hypothetical protein SPAB_01169 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|205351247|gb|EDZ37878.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 245 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 101/247 (40%), Positives = 156/247 (63%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 M R F +L + A + L +++ P +W V+T T L+ P +L+M Sbjct: 1 MRRLLFLSLAGLWLFSPVAAAQLPGLISQPLAGGGQSWSLSVQTLVFITSLTFLPAILLM 60 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP + Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK 120 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ A+ + A+P FM TRE DL+LF +A+S + + + RIL+P+++ Sbjct: 121 ISMQEALDKGAQPLRAFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVT 176 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236 Query: 239 ENLVKSF 245 +L +SF Sbjct: 237 GSLAQSF 243 >gi|168186132|ref|ZP_02620767.1| flagellar biosynthetic protein FliP [Clostridium botulinum C str. Eklund] gi|169295707|gb|EDS77840.1| flagellar biosynthetic protein FliP [Clostridium botulinum C str. Eklund] Length = 257 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 89/248 (35%), Positives = 154/248 (62%), Gaps = 9/248 (3%) Query: 4 YCFFALFLVTPELVFAKSS------LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLI 57 FAL ++ +A + ++ ++ ++ + T++S+ P L+ Sbjct: 11 LVMFALVVLGTTKAYAAPNTIPIPKINVSVDQANSPKDYVDNIKLLVMLTVISLLPSFLV 70 Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 M+T F R I+V +R+ +G PPN +++ +ALF+T ++M+PT + I+P + N Sbjct: 71 MMTSFTRIIVVLGFMRSALGTQQAPPNQILVGIALFLTIFIMAPTYKTINKEAIKPFLEN 130 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177 +IT+T A+ ++P FM TR+KDL LF+D++ + +++ ++IPSF+ Sbjct: 131 KITQTEALNNASKPMREFMLKQTRDKDLELFLDISKTDKTKI---TKENVPMYVVIPSFI 187 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 ISEL+ +F+IGFL+ +PFLIID++VA+++M+MGM MLPP ISLPFK++ FV++DGW LL Sbjct: 188 ISELKTAFKIGFLLFIPFLIIDIVVASVLMSMGMFMLPPVMISLPFKLLLFVMVDGWYLL 247 Query: 238 VENLVKSF 245 V++LV + Sbjct: 248 VKSLVMGY 255 >gi|331683500|ref|ZP_08384101.1| flagellar biosynthetic protein FliP [Escherichia coli H299] gi|331079715|gb|EGI50912.1| flagellar biosynthetic protein FliP [Escherichia coli H299] Length = 245 Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 99/247 (40%), Positives = 153/247 (61%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 M R A L+ A + L + + P +W V+T T L+ P +L+M Sbjct: 1 MRRLLSVAPVLLWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP + Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ A+++ +P FM TRE DL LF +A++ + + + RIL+P+++ Sbjct: 121 ISMQEALEKGVQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVT 176 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236 Query: 239 ENLVKSF 245 +L +SF Sbjct: 237 GSLAQSF 243 >gi|146296296|ref|YP_001180067.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409872|gb|ABP66876.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 251 Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 97/242 (40%), Positives = 155/242 (64%), Gaps = 4/242 (1%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63 + + E+ A +S + + + ++ TIL++AP +LIM+T F Sbjct: 13 FIILIITFFKNEIAAASASFSLNLGDMNNPRDVSSAIQLIIFLTILTLAPSILIMMTSFT 72 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 R +IV +R +G +PPN ++I LALF+TF++M+P +R P + QIT Sbjct: 73 RILIVLGFVRNALGTQQMPPNQILIGLALFLTFFIMAPVGERIYTQSYLPYIKGQITSQE 132 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 A++R P FM NTR+KDL LF+ +++++ T ++ R++IP+F+ISEL+ Sbjct: 133 ALKRAEAPIKEFMLKNTRKKDLDLFIKLSNTN----PTTNVRNLPLRVVIPAFIISELKS 188 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 +FE+GF+I +PFLIIDM+VA+I+M+MGM+M+PP ISLPFK++ F+L+DGW L+VE+L+K Sbjct: 189 AFEMGFIIYVPFLIIDMVVASILMSMGMLMIPPVMISLPFKILLFILVDGWGLVVESLIK 248 Query: 244 SF 245 SF Sbjct: 249 SF 250 >gi|317048609|ref|YP_004116257.1| flagellar biosynthetic protein FliP [Pantoea sp. At-9b] gi|316950226|gb|ADU69701.1| flagellar biosynthetic protein FliP [Pantoea sp. At-9b] Length = 244 Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 98/229 (42%), Positives = 150/229 (65%), Gaps = 6/229 (2%) Query: 19 AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 A + L +++ P +W V+T T L+ P +L+M+T F R IIVF +LR + Sbjct: 18 AHAQLPGLVSHPLANGGQSWSLPVQTLVFITSLTFIPAVLLMMTSFTRIIIVFGLLRNAL 77 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G S PPN V++ LALF+TF++M+PT D+ P ++I+ AI + A+P FM Sbjct: 78 GTPSAPPNQVLVGLALFLTFFIMAPTFDKIYSDAYLPFSQDKISMDVAIDKGAQPLREFM 137 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 TRE DL+LF +A++ I + + RIL+P+++ SEL+ +F+IGF + +PFL Sbjct: 138 LRQTREADLALFARLANTP----PIEGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFL 193 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LLV +L +SF Sbjct: 194 IIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLVGSLAQSF 242 >gi|331657994|ref|ZP_08358956.1| flagellar biosynthetic protein FliP [Escherichia coli TA206] gi|331056242|gb|EGI28251.1| flagellar biosynthetic protein FliP [Escherichia coli TA206] Length = 245 Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 100/239 (41%), Positives = 154/239 (64%), Gaps = 5/239 (2%) Query: 7 FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66 L+L+TP L FA+ +P + V+T T L+ P +L+M+T F R I Sbjct: 10 VLLWLITP-LAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A++ Sbjct: 69 IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 + A+P FM TRE DL LF +A++ + + + RIL+P+++ SEL+ +F+ Sbjct: 129 KGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQ 184 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243 >gi|238927449|ref|ZP_04659209.1| flagellar biosynthesis protein FliP [Selenomonas flueggei ATCC 43531] gi|238884731|gb|EEQ48369.1| flagellar biosynthesis protein FliP [Selenomonas flueggei ATCC 43531] Length = 256 Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 92/219 (42%), Positives = 148/219 (67%), Gaps = 4/219 (1%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 + + ++ + TI+S+AP +L+M T F R ++V LR + +VPPN V Sbjct: 41 VGTSENPQDVATSMQILAVLTIMSLAPAILVMTTSFVRIVVVIGFLRNALSTQNVPPNQV 100 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 +I+L+LF+TFY+M+P ++ E GIQP + QIT+ A++ + +P FM TRE DL+ Sbjct: 101 VIALSLFLTFYIMAPYWGQANENGIQPYLAGQITQEQALENIVDPMREFMLRQTRESDLA 160 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 LF++++ + N + + LIP+F+ISEL+ +F++GF+I +PF++IDMIVA+ + Sbjct: 161 LFVNLSDAPRPN----GPEDVSTFTLIPAFIISELKTAFQLGFMIYIPFIVIDMIVASTL 216 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+MGMMMLPP ISLPFK++ FV++DGW LL+++L+ SF Sbjct: 217 MSMGMMMLPPVMISLPFKILLFVMVDGWHLLIQSLIMSF 255 >gi|94266368|ref|ZP_01290067.1| Flagellar transport protein FliP [delta proteobacterium MLMS-1] gi|93453020|gb|EAT03508.1| Flagellar transport protein FliP [delta proteobacterium MLMS-1] Length = 252 Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 98/237 (41%), Positives = 151/237 (63%), Gaps = 9/237 (3%) Query: 14 PELVFAKSSLHD-----VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIV 68 P L A+ ++ + + ++ + T+LS+AP +L+M+TCF R I+V Sbjct: 19 PTLAGAQEAIPLPTFSLGIEEATTPGQVSMTIQLLLVLTVLSMAPAILLMMTCFTRLIVV 78 Query: 69 FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128 FS LR +G +PPN V+I LALF+T ++M+P + + + P M+ +I A++ Sbjct: 79 FSFLRNAIGTQQMPPNQVLIGLALFLTVFIMAPVFSQINQQAVGPYMDEEIGIEEALRTA 138 Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188 AEP FM TREKDL LF+ ++ S D + +LIP+FMISEL+ +F IG Sbjct: 139 AEPLREFMFKQTREKDLELFLGLSQSPRP----QNKDDVSTFVLIPAFMISELKTAFTIG 194 Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 F++ +PFL+IDM+VA+++++MGMMMLPP I+LPFK++ FVL+DGW L+V +LV+SF Sbjct: 195 FILFIPFLVIDMVVASVLLSMGMMMLPPIMIALPFKILLFVLVDGWYLIVGSLVRSF 251 >gi|56413108|ref|YP_150183.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362034|ref|YP_002141671.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127365|gb|AAV76871.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093511|emb|CAR58972.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 245 Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 101/247 (40%), Positives = 156/247 (63%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 M R F +L + A + L +++ P +W V+T T L+ P +L+M Sbjct: 1 MRRLLFLSLAGLWLFSPAAAAQLPGLISQPLAGGGQSWSLSVQTLVFITSLTFLPAILLM 60 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP + Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK 120 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ A+ + A+P FM TRE DL+LF +A+S + + + RIL+P+++ Sbjct: 121 ISMQEALDKGAQPLCAFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVT 176 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236 Query: 239 ENLVKSF 245 +L +SF Sbjct: 237 GSLAQSF 243 >gi|254473298|ref|ZP_05086695.1| flagellar biosynthetic protein FliP [Pseudovibrio sp. JE062] gi|211957414|gb|EEA92617.1| flagellar biosynthetic protein FliP [Pseudovibrio sp. JE062] Length = 251 Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 128/242 (52%), Positives = 168/242 (69%), Gaps = 2/242 (0%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63 FALF V P A+ + S S I++ I T+LS+AP +LIMVT F Sbjct: 11 LSLFALFWVAPAS--AQEINLSDLLPAGQASASGRIIQYVMILTVLSLAPGILIMVTSFT 68 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 RF++ S LR+G+G+ + P N+++ISLALFMTFYVM+PT D + + G+QPL+ +I+E Sbjct: 69 RFVVALSFLRSGIGLQTTPANIILISLALFMTFYVMAPTFDAAWKNGLQPLIKEEISEEV 128 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 A + + +PF FM +N REKDL LF D+A S+ + ++ R+LIP+FMISELRR Sbjct: 129 AYEEMTKPFRRFMLDNVREKDLVLFDDLAVSAFNYEKDAPVEELDLRVLIPAFMISELRR 188 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 FEIGFLI LPF++IDMIVATI M+MGMMMLPPT ISLPFKV+FFVLIDGW LL L++ Sbjct: 189 GFEIGFLIALPFVVIDMIVATITMSMGMMMLPPTVISLPFKVLFFVLIDGWYLLTGGLIR 248 Query: 244 SF 245 SF Sbjct: 249 SF 250 >gi|254470348|ref|ZP_05083752.1| flagellar biosynthetic protein FliP [Pseudovibrio sp. JE062] gi|211960659|gb|EEA95855.1| flagellar biosynthetic protein FliP [Pseudovibrio sp. JE062] Length = 248 Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 114/244 (46%), Positives = 164/244 (67%), Gaps = 5/244 (2%) Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61 I FALFL A+S D D S++ V+ + T+LS+AP +LIMVT Sbjct: 8 IGLLVFALFLFWFGPAAAQSISIDFGGGEGD-SVTERAVQLVMLLTVLSLAPSILIMVTS 66 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F R ++V S+LR+ +G+ + PPN V++SLALF+T +VM P + + ++G +P++ I Sbjct: 67 FTRIVVVLSLLRSAIGLQTAPPNAVMLSLALFLTAFVMMPAFETAWDLGAKPMIEGTIEP 126 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 A +R +EPF FMR RE DL LF ++A + T + + R+L+P+FMISEL Sbjct: 127 QEAFERASEPFHQFMRQQVRESDLLLFQELAKAPTPET----PEDLSLRVLVPAFMISEL 182 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 RR+FEIGFL+ LPFLIID+++A+++M+MGMMMLPP ISLPFK+IFFVL+DGW L+ +L Sbjct: 183 RRAFEIGFLLYLPFLIIDLVIASVLMSMGMMMLPPIVISLPFKLIFFVLVDGWQLIAGSL 242 Query: 242 VKSF 245 V+SF Sbjct: 243 VRSF 246 >gi|187778762|ref|ZP_02995235.1| hypothetical protein CLOSPO_02357 [Clostridium sporogenes ATCC 15579] gi|187772387|gb|EDU36189.1| hypothetical protein CLOSPO_02357 [Clostridium sporogenes ATCC 15579] Length = 258 Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 95/234 (40%), Positives = 148/234 (63%), Gaps = 4/234 (1%) Query: 12 VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71 P+ ++ ++ + + ++ + T+L++ P ++M+T F R I+VF Sbjct: 28 AAPQNTLPIPKINISVDNANNPTEYVDNIKLLIMLTVLTLLPSFIVMMTSFVRTIVVFGF 87 Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131 LR MG PPN V+I LALF+T ++M P IQP M N+IT+ A++ A+P Sbjct: 88 LRNAMGTQQSPPNQVMIGLALFLTLFIMRPVYTEINTKAIQPYMKNKITQEQAVEIGAKP 147 Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191 FM TR+KDL LF+D+ + + T D+ I++P+F+ISEL+ +F+IGFL+ Sbjct: 148 LRQFMLKQTRQKDLKLFVDLGKPNFKVT----KDNAPLDIVVPAFIISELKTAFQIGFLL 203 Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PFLIID++VA+++M+MGM MLPP ISLPFK++ FV++DGW LLV++LV SF Sbjct: 204 FIPFLIIDLVVASVLMSMGMFMLPPVMISLPFKLLLFVMVDGWYLLVKSLVMSF 257 >gi|323527702|ref|YP_004229855.1| flagellar biosynthetic protein FliP [Burkholderia sp. CCGE1001] gi|323384704|gb|ADX56795.1| flagellar biosynthetic protein FliP [Burkholderia sp. CCGE1001] Length = 277 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 100/240 (41%), Positives = 150/240 (62%), Gaps = 7/240 (2%) Query: 10 FLVTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66 P L FA+++ N P + + V+T + T+LS P +++M+T F R I Sbjct: 42 MFALPSLSFAQTAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTRII 101 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IV S+LR +G + PPN V++ LALF+T +VMSP LD++ G +P + TA+ Sbjct: 102 IVLSLLRQALGTTTTPPNQVLVGLALFLTLFVMSPVLDKAYTDGYKPFSEGTVPMETAVS 161 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 R PF FM TRE DL+LF ++H + + + +L+PSF+ SEL+ F+ Sbjct: 162 RGLAPFKTFMLRQTRESDLALFARISH----AAPMQGPEDVPLSLLVPSFVTSELKTGFQ 217 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 IGF I +PFLIIDM+VA+++M+MGMMM+ P +ISLPFK++ FVL+DGW LL+ +L +SF+ Sbjct: 218 IGFTIFIPFLIIDMVVASVLMSMGMMMVSPATISLPFKLMLFVLVDGWQLLLGSLAQSFV 277 >gi|90418387|ref|ZP_01226299.1| flagellar biosynthetic protein fliP [Aurantimonas manganoxydans SI85-9A1] gi|90338059|gb|EAS51710.1| flagellar biosynthetic protein fliP [Aurantimonas manganoxydans SI85-9A1] Length = 257 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 129/221 (58%), Positives = 167/221 (75%), Gaps = 6/221 (2%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 D + S IV+ FGI TILSIAP LL+MVT F R +I SILRTG+G+ + P NL++ISL Sbjct: 36 GDSTASGRIVQLFGIVTILSIAPGLLVMVTSFTRIVIALSILRTGLGLQTTPANLILISL 95 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 +LFMTF+VM+PT DR+ G+QPL+NN+ITE A R++EPF FM R +DL+LF D Sbjct: 96 SLFMTFFVMAPTFDRAWNDGLQPLLNNEITEEEAFYRISEPFKDFMLTQVRPEDLTLFGD 155 Query: 151 MAHSSHRNTDITKND------HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204 +A ++ R + ++ R LIP+FMISELRR FEIGFLI+LPFL+IDMIVAT Sbjct: 156 IAAATSRERVEPEEQGAADERDVDLRELIPAFMISELRRGFEIGFLIVLPFLVIDMIVAT 215 Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 + M+MGMMMLPPT ISLPFK++FF+LIDGW++LV +LV+SF Sbjct: 216 LTMSMGMMMLPPTIISLPFKILFFILIDGWNMLVGSLVRSF 256 >gi|253996309|ref|YP_003048373.1| flagellar biosynthetic protein FliP [Methylotenera mobilis JLW8] gi|253982988|gb|ACT47846.1| flagellar biosynthetic protein FliP [Methylotenera mobilis JLW8] Length = 251 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 102/234 (43%), Positives = 150/234 (64%), Gaps = 6/234 (2%) Query: 14 PELVFAKSSLHDVMNIPADLSIS--TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71 P V A +L V P+ T ++T + T L+ P +++M+T F R IIV S+ Sbjct: 21 PFSVLAADALPLVHASPSAGGGQDYTLSLQTLILLTSLTFLPAIVLMMTGFTRIIIVLSL 80 Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131 LR +G SVPPN V+I LALF+TF+VMSP +D+ +PL NQI+ A+ + P Sbjct: 81 LRQALGTQSVPPNQVMIGLALFLTFFVMSPVIDKIYVDAYKPLSENQISMQEAMDKGVAP 140 Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191 FM TRE DL+LF+ MA I D + ++L+P+F+ SEL+ +F+IGF I Sbjct: 141 LKEFMLKQTREGDLALFVKMAEVEK----IESPDQVPLKVLVPAFVTSELKTAFQIGFAI 196 Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PFLIIDM+VA+++M+MGMMM+ P ++LPFK++ FVL+DGW L++ +LV+SF Sbjct: 197 FIPFLIIDMVVASVLMSMGMMMVSPAIVALPFKLMLFVLVDGWQLILGSLVESF 250 >gi|237731996|ref|ZP_04562477.1| flagellar biosynthesis protein FliP [Citrobacter sp. 30_2] gi|226907535|gb|EEH93453.1| flagellar biosynthesis protein FliP [Citrobacter sp. 30_2] Length = 245 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 99/245 (40%), Positives = 155/245 (63%), Gaps = 5/245 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 ++ L+L +P + A+ +P T V+T T L+ P +L+M+T Sbjct: 4 LLSLTLAGLWLFSP-VALAQLPGLVSQPLPGGGQNWTLPVQTLVFITSLTFLPAILLMMT 62 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ Sbjct: 63 SFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKIS 122 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A+++ A+P FM TRE DL+LF +A+S + + + RIL+P+++ SE Sbjct: 123 MQEAMEKGAQPLREFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSE 178 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV + Sbjct: 179 LKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKMMLFVLVDGWQLLVGS 238 Query: 241 LVKSF 245 L +SF Sbjct: 239 LAQSF 243 >gi|324114209|gb|EGC08182.1| flagellar biosynthetic protein FliP [Escherichia fergusonii B253] Length = 245 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 99/247 (40%), Positives = 154/247 (62%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 M R ++ A + L ++ P +W V+T T L+ P +L+M Sbjct: 1 MRRLLTLIPAMLWLVTPCALAQLPGLVTQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP + Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ A+++ A+P FM TRE DL+LF +A++ I + + RIL+P+++ Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLALFARLANTG----PIQGPEVVPMRILLPAYVT 176 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236 Query: 239 ENLVKSF 245 +L +SF Sbjct: 237 GSLAQSF 243 >gi|253990104|ref|YP_003041460.1| flagellar biosynthesis protein FliP [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781554|emb|CAQ84717.1| flagellar biosynthetic protein flip precursor [Photorhabdus asymbiotica] Length = 251 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 100/245 (40%), Positives = 149/245 (60%), Gaps = 8/245 (3%) Query: 3 RYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVT 60 R L+ P A+ L +++ P +W V+T T L P L+M+T Sbjct: 11 RLAITLTALILPMDAAAQ--LPGIISQPLANGGQSWSLPVQTLVFITALGFIPAALLMMT 68 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R IIV +LR +G S PPN V++ LALFMTF++MSP D+ + P ++I+ Sbjct: 69 SFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFMTFFIMSPVFDKVYQDAYLPFSEDKIS 128 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 TA++ A+P FM TRE DL+LF +A D + R+L+P+F+ SE Sbjct: 129 LETALENGAKPLRQFMLRQTRENDLALFARLADQP----PFETADSVPMRVLMPAFITSE 184 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ + Sbjct: 185 LKTAFQIGFTLFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGS 244 Query: 241 LVKSF 245 L +SF Sbjct: 245 LAQSF 249 >gi|16765317|ref|NP_460932.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167993554|ref|ZP_02574648.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|1706856|sp|P54700|FLIP_SALTY RecName: Full=Flagellar biosynthetic protein fliP; Flags: Precursor gi|1066863|gb|AAB81319.1| fliP [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16420514|gb|AAL20891.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205328373|gb|EDZ15137.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261247145|emb|CBG24968.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993968|gb|ACY88853.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158493|emb|CBW18003.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912969|dbj|BAJ36943.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224624|gb|EFX49687.1| Flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323130258|gb|ADX17688.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988868|gb|AEF07851.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 245 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 100/247 (40%), Positives = 156/247 (63%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 M R F +L + A + L +++ P +W V+T T L+ P +L+M Sbjct: 1 MRRLLFLSLAGLWLFSPAAAAQLPGLISQPLAGGGQSWSLSVQTLVFITSLTFLPAILLM 60 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP + Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK 120 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ A+ + A+P FM TRE DL+LF +A+S + + + RIL+P+++ Sbjct: 121 ISMQEALDKGAQPLRAFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVT 176 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LL+ Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLM 236 Query: 239 ENLVKSF 245 +L +SF Sbjct: 237 GSLAQSF 243 >gi|46200839|ref|ZP_00056386.2| COG1338: Flagellar biosynthesis pathway, component FliP [Magnetospirillum magnetotacticum MS-1] Length = 241 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 111/245 (45%), Positives = 163/245 (66%), Gaps = 5/245 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 MI L SL+ + P S ++ I++ + T+LS+AP +L+M+T Sbjct: 1 MILAAAIGLGTALLAGPVLAQSLNIDLGGPQ-ASATSRIIQLIALTTVLSVAPSILVMIT 59 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F RF++V LR +G PPN V++SLA+F+T +VM+PT +++ GIQP+M+ + Sbjct: 60 SFTRFVVVLGFLRQALGTQQSPPNTVMVSLAMFLTAFVMTPTFEKAWTDGIQPVMDGHLD 119 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 E +R +PF FM + R +DL LFMDM+ R ++ K + + R LIP+FMISE Sbjct: 120 EIEGFERAIKPFHAFMSKHVRAQDLKLFMDMS----RAKEVEKAEDVPLRALIPAFMISE 175 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 LRR+FEIGFLI LPFLIIDM++A+++M+MGMMM+PP ISLPFK+IFFV++DGW L+V + Sbjct: 176 LRRAFEIGFLIFLPFLIIDMVIASVLMSMGMMMIPPAMISLPFKLIFFVMVDGWYLVVGS 235 Query: 241 LVKSF 245 LV+S+ Sbjct: 236 LVQSY 240 >gi|332756104|gb|EGJ86457.1| flagellar biosynthetic protein FliP [Shigella flexneri 4343-70] gi|333003359|gb|EGK22905.1| flagellar biosynthetic protein FliP [Shigella flexneri K-218] Length = 245 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 99/239 (41%), Positives = 154/239 (64%), Gaps = 5/239 (2%) Query: 7 FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66 L+L+TP L FA+ +P + V+T T L+ P +L+M+T F R I Sbjct: 10 VLLWLITP-LAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IVF +LR +G S PPN V++ LALF+TF++MSP +++ QP +I+ A++ Sbjct: 69 IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVINKIYVDAYQPFSEEKISMQEALE 128 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 + A+P FM TRE DL LF +A++ + + + RIL+P+++ SEL+ +F+ Sbjct: 129 KGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQ 184 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243 >gi|291613058|ref|YP_003523215.1| flagellar biosynthetic protein FliP [Sideroxydans lithotrophicus ES-1] gi|291583170|gb|ADE10828.1| flagellar biosynthetic protein FliP [Sideroxydans lithotrophicus ES-1] Length = 248 Score = 215 bits (548), Expect = 5e-54, Method: Composition-based stats. Identities = 96/246 (39%), Positives = 151/246 (61%), Gaps = 7/246 (2%) Query: 3 RYCFFALFLVTPELVFAKSSLHDVMN---IPADLSISTWIVRTFGIFTILSIAPILLIMV 59 + FAL FA S +N P T ++T + + L+ P +L+M+ Sbjct: 5 KLIAFALLFAMSTSAFAAESGLLALNSTPTPGGGQTYTLSLQTLILISSLTFLPAILLMM 64 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R IIV +LR+ +G S PPN V++ LALF+TF+VM+P D+ P N+I Sbjct: 65 TGFTRIIIVLGLLRSAIGTPSSPPNQVLVGLALFLTFFVMAPVFDKIYSDAYLPYSENKI 124 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 + A ++ + P FM TRE DL+LF+ +++S + + + +IL+P+++ S Sbjct: 125 SLQQAYEKGSAPLKAFMLRQTRETDLALFVRISNS----EPLQSAEDVPMKILVPAYVTS 180 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+ +F+IGF++ +PFLIIDM+VA+++M+MGMMM+ P SLPFK++ FVL DGW+LL+ Sbjct: 181 ELKTAFQIGFVVFIPFLIIDMVVASVLMSMGMMMVSPAVFSLPFKIMLFVLADGWNLLIG 240 Query: 240 NLVKSF 245 +LV+SF Sbjct: 241 SLVQSF 246 >gi|333003044|gb|EGK22598.1| flagellar biosynthetic protein FliP [Shigella flexneri VA-6] Length = 245 Score = 215 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 100/247 (40%), Positives = 155/247 (62%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 M R A L+ + A + L + + P +W V+T T L+ P +L+M Sbjct: 1 MRRLFSVAPVLLWLIMPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP + Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ A+++ A+P FM TRE DL LF +A++ + + + RIL+P+++ Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVT 176 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236 Query: 239 ENLVKSF 245 +L +SF Sbjct: 237 GSLAQSF 243 >gi|292669767|ref|ZP_06603193.1| flagellar biosynthetic protein FliP [Selenomonas noxia ATCC 43541] gi|292648564|gb|EFF66536.1| flagellar biosynthetic protein FliP [Selenomonas noxia ATCC 43541] Length = 249 Score = 215 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 90/224 (40%), Positives = 150/224 (66%), Gaps = 4/224 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 ++ + + ++ + TI+S+AP +L+M T F R ++V LR + +V Sbjct: 29 TVSLGVGTSENPQDVATSMQLLAVLTIVSLAPAILVMTTSFVRIVVVIGFLRNALSTQNV 88 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PPN V+I+L+LF++FY+M+P ++ E GIQP + +I++ A++ V +P FM TR Sbjct: 89 PPNQVVIALSLFLSFYIMAPYWGQANENGIQPYLAGEISQEQALENVVDPMREFMFRQTR 148 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 E DL+LF++++ + + + + LIP+F+ISEL+ +F+IGF+I +PF++IDMI Sbjct: 149 ESDLALFVNLSDAPRPD----GPEDVSTFTLIPAFIISELKTAFQIGFMIYIPFIVIDMI 204 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 VA+ +M+MGMMMLPP ISLPFK++ FV++DGW LL+++L+ SF Sbjct: 205 VASTLMSMGMMMLPPVMISLPFKILLFVMVDGWHLLIQSLIMSF 248 >gi|313144838|ref|ZP_07807031.1| flagellar biosynthesis protein FliP [Helicobacter cinaedi CCUG 18818] gi|313129869|gb|EFR47486.1| flagellar biosynthesis protein FliP [Helicobacter cinaedi CCUG 18818] Length = 266 Score = 215 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 103/224 (45%), Positives = 149/224 (66%), Gaps = 4/224 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 S+ + P + + + I T+L IAP L++++T F R +IVF+ LRT +G Sbjct: 46 SVDLSLTAPQEPTELVATLNIVLIITLLVIAPSLVLVMTSFTRIVIVFAFLRTALGTQQS 105 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PP V++SLAL +TF++M P +S E+GI+P QI+ A +R PF FM NTR Sbjct: 106 PPTQVLVSLALVLTFFIMEPVATKSYEVGIKPYTEKQISYDEAFERAIVPFKDFMIKNTR 165 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 EKDL+LF + + + T D + +LIP+FMISEL+ +F IGFL+ LPFL+IDM+ Sbjct: 166 EKDLALFFRIRNLENPQT----VDDVPLTVLIPAFMISELKTAFWIGFLLYLPFLVIDMV 221 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +++++MAMGMMMLPP ISLPFK++ FVL+DGW+LL+ NLV+ F Sbjct: 222 ISSVLMAMGMMMLPPVMISLPFKILVFVLVDGWNLLIGNLVQGF 265 >gi|254502570|ref|ZP_05114721.1| flagellar biosynthetic protein FliP [Labrenzia alexandrii DFL-11] gi|222438641|gb|EEE45320.1| flagellar biosynthetic protein FliP [Labrenzia alexandrii DFL-11] Length = 246 Score = 215 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 132/245 (53%), Positives = 171/245 (69%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 M + A L A+ + + S S +++ + T+LS+AP +LIMVT Sbjct: 1 MRLFLTVAALLALTGAAAAQVPDLSALLPEGEGSASGRVIQMIILLTVLSLAPGILIMVT 60 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F RF+I FS LR+G+G+ + P NL++ISLALFMTFYVM+PT DR+ E G++PLMNN+IT Sbjct: 61 SFIRFVIAFSFLRSGIGLQTTPGNLILISLALFMTFYVMAPTFDRAWEDGVRPLMNNEIT 120 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 E A ++ EPF FM + REKDL LF D+A + + +E R+LIP+FMISE Sbjct: 121 EEEAYVKITEPFREFMLSQVREKDLVLFDDLAAGRVTDGSADSAEEVELRVLIPAFMISE 180 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 LRR FEIGFLI LPFL+IDMIVATI M+MGMMMLPPT ISLPFK +FF+LIDGW+LLV + Sbjct: 181 LRRGFEIGFLIALPFLVIDMIVATITMSMGMMMLPPTVISLPFKALFFILIDGWNLLVGS 240 Query: 241 LVKSF 245 LV+SF Sbjct: 241 LVRSF 245 >gi|170769417|ref|ZP_02903870.1| flagellar biosynthetic protein FliP [Escherichia albertii TW07627] gi|170121741|gb|EDS90672.1| flagellar biosynthetic protein FliP [Escherichia albertii TW07627] Length = 245 Score = 215 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 99/244 (40%), Positives = 154/244 (63%), Gaps = 4/244 (1%) Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61 + + LF + L FA+ +P + V+T T L+ P +L+M+T Sbjct: 4 LLWVTPVLFWLVTPLTFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTS 63 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ Sbjct: 64 FTRIIIVFGLLRNALGTLSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISM 123 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 A+++ A+P FM TRE DL+LF +A+S + + + RIL+P+++ SEL Sbjct: 124 QEALEKGAQPLREFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSEL 179 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 + +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L Sbjct: 180 KTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSL 239 Query: 242 VKSF 245 +SF Sbjct: 240 AQSF 243 >gi|33596149|ref|NP_883792.1| flagellar biosynthesis protein FliP [Bordetella parapertussis 12822] gi|33573152|emb|CAE36802.1| flagellar biosynthetic protein FliP [Bordetella parapertussis] Length = 266 Score = 215 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 101/236 (42%), Positives = 147/236 (62%), Gaps = 6/236 (2%) Query: 12 VTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVF 69 + P A+++L + P T+ + +T + T LS P L+M+T F R IIV Sbjct: 33 LWPSGALAQATLPALTATPGPNGSETYSLSMQTLLLMTSLSFLPAALLMMTGFTRIIIVL 92 Query: 70 SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129 +LR+ MG PPN V+I LALF+TFY MSP D+ QPL I TA++R Sbjct: 93 GLLRSAMGTAMSPPNHVLIGLALFLTFYTMSPVFDKIYTDAYQPLAAGSIPFETAVERAG 152 Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189 P FM + TRE DL+LF ++A+ + + RILIP+F+ SEL+ +F+IGF Sbjct: 153 SPLHNFMLHQTRENDLTLFANLANLP----AMEDPSQVPMRILIPAFITSELKTAFQIGF 208 Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 I +PFLIID++VA+++MA+GMMM+PP +++LPFK++ FVL DGW LL+ +L +SF Sbjct: 209 TIFIPFLIIDLVVASVLMALGMMMVPPVTVALPFKLMLFVLADGWHLLLGSLAQSF 264 >gi|94264046|ref|ZP_01287846.1| Flagellar transport protein FliP [delta proteobacterium MLMS-1] gi|93455557|gb|EAT05744.1| Flagellar transport protein FliP [delta proteobacterium MLMS-1] Length = 252 Score = 215 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 98/237 (41%), Positives = 151/237 (63%), Gaps = 9/237 (3%) Query: 14 PELVFAKSSLHD-----VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIV 68 P L A+ ++ + + ++ + T+LS+AP +L+M+TCF R I+V Sbjct: 19 PTLASAQEAIPLPTFSLGIEEATTPGQVSMTIQLLLVLTVLSMAPAILLMMTCFTRLIVV 78 Query: 69 FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128 FS LR +G +PPN V+I LALF+T ++M+P + + + P M+ +I A++ Sbjct: 79 FSFLRNAIGTQQMPPNQVLIGLALFLTVFIMAPVFSQINQQAVGPYMDEEIGIEEALRTA 138 Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188 AEP FM TREKDL LF+ ++ S D + +LIP+FMISEL+ +F IG Sbjct: 139 AEPLREFMFKQTREKDLELFLGLSQSPRP----QNKDDVSTFVLIPAFMISELKTAFTIG 194 Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 F++ +PFL+IDM+VA+++++MGMMMLPP I+LPFK++ FVL+DGW L+V +LV+SF Sbjct: 195 FILFIPFLVIDMVVASVLLSMGMMMLPPIMIALPFKILLFVLVDGWYLIVGSLVRSF 251 >gi|302392379|ref|YP_003828199.1| flagellar biosynthetic protein FliP [Acetohalobium arabaticum DSM 5501] gi|302204456|gb|ADL13134.1| flagellar biosynthetic protein FliP [Acetohalobium arabaticum DSM 5501] Length = 257 Score = 215 bits (547), Expect = 5e-54, Method: Composition-based stats. Identities = 93/235 (39%), Positives = 149/235 (63%), Gaps = 4/235 (1%) Query: 11 LVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70 +V F ++ + ++ + T+LS+AP +LIM+T F R +V S Sbjct: 26 IVEAAPTFEIPDVNLSIETGEGSQNLALPLQIMLLLTVLSLAPAILIMLTSFVRIAVVLS 85 Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130 ++R + +PPN VII LA+F+T +VM+P + + +QP ++++I + A ++ + Sbjct: 86 LIRRALATRRMPPNQVIIGLAIFLTIFVMAPVWGQIYDTAVQPYLDDEINQMQAYEQGIK 145 Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190 P FM TREKD++LF+D+ + I +LIP+F+ISELR +F+IGF+ Sbjct: 146 PLRKFMFKQTREKDIALFVDLGEIERPQNQM----EIPTYVLIPAFIISELRIAFQIGFI 201 Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 I LPF++IDMIVA+ +M+MGMMMLPP ISLPFK++ FVL+DGW L++++L+K+F Sbjct: 202 IYLPFIVIDMIVASTLMSMGMMMLPPVMISLPFKILLFVLVDGWYLVIKSLIKTF 256 >gi|319409181|emb|CBI82825.1| Flagellar biosynthetic protein fliP [Bartonella schoenbuchensis R1] Length = 253 Score = 215 bits (547), Expect = 6e-54, Method: Composition-based stats. Identities = 135/252 (53%), Positives = 187/252 (74%), Gaps = 11/252 (4%) Query: 2 IRYCFFALFLVTPEL--VFAKSSLHDVMN------IPADLSISTWIVRTFGIFTILSIAP 53 + + F L LVT + VFA+ + P D IS IV+ FG+ T+LS+AP Sbjct: 5 VGFVFMMLLLVTTDATDVFAQQTNLASTGGLSGLLAPTDGKISGRIVQLFGLLTVLSVAP 64 Query: 54 ILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQP 113 LLIMVT F RF+I FS+LR+G+G+ + P NLV+ISLALFMTFYVM+PT + + E G+QP Sbjct: 65 GLLIMVTSFTRFVIAFSLLRSGLGLQTTPSNLVMISLALFMTFYVMAPTFNTAWEQGVQP 124 Query: 114 LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILI 173 L+ N+I+E AI+++++PF FM + REKDL LF+D++ + ++ I++R+L+ Sbjct: 125 LIKNEISEQKAIEKISQPFREFMISQVREKDLDLFVDLSD---PSFNVKTGADIDFRVLV 181 Query: 174 PSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDG 233 P+FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDG Sbjct: 182 PAFMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDG 241 Query: 234 WSLLVENLVKSF 245 W+LLV +L++SF Sbjct: 242 WNLLVGSLIRSF 253 >gi|163758021|ref|ZP_02165109.1| putative flagellar biosynthetic protein FliP [Hoeflea phototrophica DFL-43] gi|162284310|gb|EDQ34593.1| putative flagellar biosynthetic protein FliP [Hoeflea phototrophica DFL-43] Length = 245 Score = 215 bits (547), Expect = 6e-54, Method: Composition-based stats. Identities = 140/247 (56%), Positives = 190/247 (76%), Gaps = 3/247 (1%) Query: 1 MIRYCFFAL-FLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 MIR + +V A++ ++ P D S+++WI+RTFG+ T+LS+AP +LIMV Sbjct: 1 MIRLLSAVVAMMVIATAANAQALDPGLLQAPLDGSVASWIIRTFGLLTVLSVAPGILIMV 60 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T FPRFII F+ILR GMG+ + P N++++SLALFMTFYVM+PT DR+ E G+ PL+ +QI Sbjct: 61 TSFPRFIIAFAILRAGMGLATTPANMILVSLALFMTFYVMAPTFDRAWENGVTPLLEDQI 120 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 TE AIQ +A+PF FM NTR KDL+LF+D+A + R + I+ R+L+P+FMIS Sbjct: 121 TEEEAIQLIADPFRDFMLVNTRPKDLALFVDLA--TERGQSTETDGKIDMRVLVPAFMIS 178 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 E+RR FEIGFL++LPFL+ID++VATI MAMGMMMLPPT+ISLPFK++FFVLIDGW+LLV Sbjct: 179 EIRRGFEIGFLVVLPFLVIDLVVATITMAMGMMMLPPTAISLPFKILFFVLIDGWNLLVG 238 Query: 240 NLVKSFI 246 +LV+SF+ Sbjct: 239 SLVRSFV 245 >gi|163856448|ref|YP_001630746.1| flagellar biosynthesis protein FliP [Bordetella petrii DSM 12804] gi|163260176|emb|CAP42478.1| flagellar biosynthesis protein FliP [Bordetella petrii] Length = 262 Score = 215 bits (547), Expect = 6e-54, Method: Composition-based stats. Identities = 100/235 (42%), Positives = 148/235 (62%), Gaps = 6/235 (2%) Query: 13 TPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFS 70 P V A+++L + P T+ + +T + T LS P L+M+T F R IIV Sbjct: 30 FPAGVVAQATLPALTATPGPGGAQTYSLSMQTLLLMTSLSFLPAALLMMTGFTRIIIVLG 89 Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130 +LR+ +G PPN V+I LALF+TFY MSP DR +PL I TA++R A Sbjct: 90 LLRSALGTAMSPPNHVLIGLALFLTFYTMSPVFDRIYSEAYKPLSEGSIPFETAVERAAA 149 Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190 P FM + TRE DL+LF ++A+ + + +IL+P+F+ SEL+ +F+IGF Sbjct: 150 PLHTFMLHQTRENDLTLFANLANQP----ALEDPSQVPMKILVPAFITSELKTAFQIGFT 205 Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 I +PFLIID++VA+++MA+GMMM+PP +++LPFK++ FVL DGW+LL+ +L SF Sbjct: 206 IFIPFLIIDLVVASVLMALGMMMVPPVTVALPFKLMLFVLADGWNLLLGSLASSF 260 >gi|37525861|ref|NP_929205.1| flagellar biosynthesis protein FliP [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785290|emb|CAE14231.1| flagellar biosynthetic protein FliP [Photorhabdus luminescens subsp. laumondii TTO1] Length = 244 Score = 215 bits (547), Expect = 6e-54, Method: Composition-based stats. Identities = 100/245 (40%), Positives = 150/245 (61%), Gaps = 8/245 (3%) Query: 3 RYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVT 60 R L+ P A+ L +++ P +W V+T T L+ P L+M+T Sbjct: 4 RLGMILAALILPMDAAAQ--LPGIISQPLANGGQSWSLPVQTLVFITALTFIPAALLMMT 61 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R IIV +LR +G S PPN V++ LALFMTF++MSP D+ + P ++I+ Sbjct: 62 SFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFMTFFIMSPVFDKVYQDAYLPFSEDKIS 121 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 TA++ A+P FM TRE DL+LF +A D + R+L+P+F+ SE Sbjct: 122 LETALENGAKPLRQFMLRQTRENDLALFARLADQP----PFETADSVPMRVLMPAFITSE 177 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ + Sbjct: 178 LKTAFQIGFTLFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGS 237 Query: 241 LVKSF 245 L +SF Sbjct: 238 LAQSF 242 >gi|310764878|gb|ADP09828.1| Flagellar biosynthetic protein FliP [Erwinia sp. Ejp617] Length = 247 Score = 215 bits (547), Expect = 6e-54, Method: Composition-based stats. Identities = 94/244 (38%), Positives = 152/244 (62%), Gaps = 4/244 (1%) Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61 + + + P + ++ + P T V+T + + L+ P +L+M+T Sbjct: 6 VLRALLLVAGMLPAVGALAANSDITLASPQGNGGWTLPVQTLVLLSSLTFLPAVLLMMTG 65 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F R IIV ++R +G + PPN V++ LALF+TFYVMSP ++ E QPL ++IT Sbjct: 66 FTRIIIVLGLMRNALGTPTAPPNQVLVGLALFLTFYVMSPVFNQIYEQAWQPLQEDKITM 125 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 A+++ +P FM + TRE DL++F +A + + + + IL+P+F+ SEL Sbjct: 126 EVALEQGVKPLRAFMLDQTRENDLAMFAQIA----KAGEFKGPEEVPLGILVPAFVTSEL 181 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 + +F+IGF I +PFLIID++VA+I+MA+GMMM+PP +I+LPFK++ FVL+DGW LL+ +L Sbjct: 182 KTAFQIGFTIFIPFLIIDLVVASILMALGMMMVPPATIALPFKLMLFVLVDGWQLLMGSL 241 Query: 242 VKSF 245 +SF Sbjct: 242 AQSF 245 >gi|90423026|ref|YP_531396.1| flagellar biosynthesis protein FliP [Rhodopseudomonas palustris BisB18] gi|90105040|gb|ABD87077.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris BisB18] Length = 254 Score = 214 bits (546), Expect = 6e-54, Method: Composition-based stats. Identities = 118/247 (47%), Positives = 167/247 (67%), Gaps = 8/247 (3%) Query: 3 RYCFFALFLVTPE----LVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIM 58 R F L L+ A+ ++ P ++ ++ + T+LSIAP +LIM Sbjct: 9 RVVAFLLTLIAAGSLADPALAQDISINLGGGPGGGGVTERAIQLIALLTVLSIAPSILIM 68 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R ++V S+LRT +G + PPN VI++LALF+T +VM P L +S + GI+PL+ NQ Sbjct: 69 MTSFTRIVVVLSLLRTALGTATAPPNSVILALALFLTAFVMGPVLQKSYDDGIKPLIANQ 128 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 IT A+QR P FM+ N REKDL LFMD+++ T D + RIL+P+FMI Sbjct: 129 ITVEEALQRAVVPLRGFMQKNVREKDLKLFMDLSNEPIPAT----PDDLSLRILVPAFMI 184 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+R+FEIGFL+ LPFLIID++VA+++M+MGMMMLPP +SLPFK+IFFVL+DGWSL+ Sbjct: 185 SELKRAFEIGFLLFLPFLIIDLVVASVLMSMGMMMLPPVVVSLPFKLIFFVLVDGWSLVA 244 Query: 239 ENLVKSF 245 +LV+S+ Sbjct: 245 GSLVQSY 251 >gi|296157442|ref|ZP_06840277.1| flagellar biosynthetic protein FliP [Burkholderia sp. Ch1-1] gi|295892214|gb|EFG71997.1| flagellar biosynthetic protein FliP [Burkholderia sp. Ch1-1] Length = 279 Score = 214 bits (546), Expect = 7e-54, Method: Composition-based stats. Identities = 100/235 (42%), Positives = 150/235 (63%), Gaps = 7/235 (2%) Query: 15 ELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71 L FA+++ N P + + V+T + T+LS P +++M+T F R IIV S+ Sbjct: 49 TLSFAQAAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTRIIIVLSL 108 Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131 LR +G + PPN V++ LALF+T +VMSP LD++ G +P + I TA+ R P Sbjct: 109 LRQALGTTTTPPNQVLVGLALFLTLFVMSPVLDKAYTDGYKPFSDGSIPMETAVNRGLAP 168 Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191 F FM TRE DL+LF ++H + + + +L+PSF+ SEL+ F+IGF I Sbjct: 169 FKTFMLRQTRESDLALFARISH----AAPMQGPEDVPLSLLVPSFVTSELKTGFQIGFTI 224 Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +PFLIIDM+VA+++M+MGMMM+ P +ISLPFK++ FVL+DGW LL+ +L +SF+ Sbjct: 225 FIPFLIIDMVVASVLMSMGMMMVSPATISLPFKLMLFVLVDGWQLLLGSLAQSFV 279 >gi|322421721|ref|YP_004200944.1| flagellar biosynthetic protein FliP [Geobacter sp. M18] gi|320128108|gb|ADW15668.1| flagellar biosynthetic protein FliP [Geobacter sp. M18] Length = 252 Score = 214 bits (546), Expect = 7e-54, Method: Composition-based stats. Identities = 94/219 (42%), Positives = 150/219 (68%), Gaps = 7/219 (3%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 ++ PAD+S+ +++ F + T++S+AP LL+M T F R ++V S LR+ +G P N + Sbjct: 40 VSKPADVSV---VLQIFFVMTVISLAPSLLMMTTSFTRIVVVLSFLRSALGTQQAPSNQI 96 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 ++ L+LF+TF++M+P + +QP N IT+ A++R P FM + REKDL+ Sbjct: 97 VVGLSLFLTFFIMAPVWQQVNTQALQPYKANTITQEEALKRGVAPLRKFMLSQVREKDLA 156 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 LF++++ D I LIP++M+SEL+ +F+IGFL+ +PFL++DM+VA+++ Sbjct: 157 LFINLSKLPRPK----NADDIPTMTLIPAYMVSELKTAFQIGFLVFIPFLVLDMVVASVL 212 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+MGMMMLPP ISLPFK++ FVL+DGW L++ +LVKSF Sbjct: 213 MSMGMMMLPPVMISLPFKILLFVLVDGWGLVIGSLVKSF 251 >gi|86750888|ref|YP_487384.1| flagellar biosynthesis protein FliP [Rhodopseudomonas palustris HaA2] gi|86573916|gb|ABD08473.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris HaA2] Length = 254 Score = 214 bits (546), Expect = 7e-54, Method: Composition-based stats. Identities = 108/216 (50%), Positives = 159/216 (73%), Gaps = 4/216 (1%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 ++ ++ + T+LSIAP +LIM+T F R ++V S+LRT +G + PPN+VII+ Sbjct: 39 GGGTGVTERAIQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLRTALGTATAPPNMVIIA 98 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 LALF+T +VM PTL +S + GI+PL+ N+++ A+ R + P +FM+ N REKDL LF+ Sbjct: 99 LALFLTAFVMGPTLQKSYDDGIKPLIANEMSVEDALVRASGPLRIFMQKNVREKDLKLFL 158 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 D++ T + + RIL+P+FMISEL+R+FEIGFL+ LPFLIID++VA+++M+M Sbjct: 159 DLSGEPPPAT----PEDLSLRILMPAFMISELKRAFEIGFLLFLPFLIIDLVVASVLMSM 214 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMMLPP +SLPFK+IFFVL+DGWSL+ +LV+S+ Sbjct: 215 GMMMLPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY 250 >gi|293395593|ref|ZP_06639876.1| flagellar biosynthetic protein FliP [Serratia odorifera DSM 4582] gi|291421912|gb|EFE95158.1| flagellar biosynthetic protein FliP [Serratia odorifera DSM 4582] Length = 259 Score = 214 bits (546), Expect = 7e-54, Method: Composition-based stats. Identities = 94/229 (41%), Positives = 150/229 (65%), Gaps = 6/229 (2%) Query: 19 AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 A + L +++ P +W V+T + T LS P +L+M+T F R IIV +LR + Sbjct: 33 AIAQLPGLISQPLAGGGQSWTLPVQTLVLLTSLSFLPAMLLMMTSFTRIIIVLGLLRNAL 92 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G + PPN V++ LALF+TF++M+P D+ + P ++I+ TAI + A+P FM Sbjct: 93 GTPTAPPNQVMLGLALFLTFFIMAPVFDKVYQDAYLPFSQDKISMETAIDQGAQPLREFM 152 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 TRE DL+L+ +A+ + + + RIL+P+++ SEL+ +F+IGF + +PFL Sbjct: 153 LRQTREADLALYARLANLP----PLAGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFL 208 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 209 IIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 257 >gi|91976169|ref|YP_568828.1| flagellar biosynthesis protein FliP [Rhodopseudomonas palustris BisB5] gi|91682625|gb|ABE38927.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris BisB5] Length = 255 Score = 214 bits (546), Expect = 7e-54, Method: Composition-based stats. Identities = 107/219 (48%), Positives = 158/219 (72%), Gaps = 4/219 (1%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 + ++ ++ + T+LSIAP +L+M+T F R ++V S+LRT +G + PPN V Sbjct: 37 LGGAGGTGVTERAIQLIALLTVLSIAPSILVMMTSFTRIVVVLSLLRTALGTATAPPNSV 96 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 II+LALF+T +VM PTL +S + GI+PL+ N++ A+ R + P +FM+ N REKDL Sbjct: 97 IIALALFLTGFVMGPTLQKSYDDGIKPLIANEMAVEDALVRASGPLRIFMQKNVREKDLK 156 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 LF+D++ T + + RIL+P+FMISEL+R+FEIGFL+ LPFLIID++VA+++ Sbjct: 157 LFLDLSGEQPPAT----PEELSLRILMPAFMISELKRAFEIGFLLFLPFLIIDLVVASVL 212 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+MGMMMLPP +SLPFK+IFFVL+DGWSL+ +LV+S+ Sbjct: 213 MSMGMMMLPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY 251 >gi|74312488|ref|YP_310907.1| flagellar biosynthesis protein FliP [Shigella sonnei Ss046] gi|73855965|gb|AAZ88672.1| flagellar biosynthesis [Shigella sonnei Ss046] gi|323168931|gb|EFZ54611.1| flagellar biosynthetic protein FliP [Shigella sonnei 53G] Length = 245 Score = 214 bits (546), Expect = 7e-54, Method: Composition-based stats. Identities = 99/247 (40%), Positives = 153/247 (61%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 M R A L+ A + L + + P +W V+T T L+ P +L+M Sbjct: 1 MRRLLSVAPVLLWLVTPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIVF +LR +G S PPN V++ LALF+TF++MS +D+ QP + Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSSVIDKIYVDAYQPFSEEK 120 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ A+++ A+P FM TRE DL LF +A++ + + + RIL+P+++ Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVT 176 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236 Query: 239 ENLVKSF 245 +L +SF Sbjct: 237 GSLAQSF 243 >gi|170755849|ref|YP_001782265.1| flagellar biosynthesis protein FliP [Clostridium botulinum B1 str. Okra] gi|169121061|gb|ACA44897.1| flagellar biosynthetic protein FliP [Clostridium botulinum B1 str. Okra] Length = 258 Score = 214 bits (546), Expect = 7e-54, Method: Composition-based stats. Identities = 95/234 (40%), Positives = 148/234 (63%), Gaps = 4/234 (1%) Query: 12 VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71 P+ ++ ++ + + ++ + T+L++ P ++M+T F R I+VF Sbjct: 28 AAPQNTMPIPKINISVDNANNPTEYVDNIKLLIMLTVLTLLPSFIVMMTSFVRTIVVFGF 87 Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131 LR MG PPN V+I LALF+T ++M P IQP M N+I + A++ A+P Sbjct: 88 LRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEINTKAIQPYMKNKINQEQAVEIGAKP 147 Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191 FM TR+KDL LF+D+A + + T D+ I++P+F+ISEL+ +F+IGFL+ Sbjct: 148 LRQFMLKQTRQKDLKLFVDLAKPNFKVT----KDNAPLYIVVPAFIISELKTAFQIGFLL 203 Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PFLIID++VA+++M+MGM MLPP ISLPFK++ FV++DGW LLV++LV SF Sbjct: 204 FIPFLIIDLVVASVLMSMGMFMLPPVMISLPFKLLLFVMVDGWYLLVKSLVMSF 257 >gi|269836609|ref|YP_003318837.1| flagellar biosynthetic protein FliP [Sphaerobacter thermophilus DSM 20745] gi|269785872|gb|ACZ38015.1| flagellar biosynthetic protein FliP [Sphaerobacter thermophilus DSM 20745] Length = 274 Score = 214 bits (546), Expect = 7e-54, Method: Composition-based stats. Identities = 92/227 (40%), Positives = 138/227 (60%), Gaps = 4/227 (1%) Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 A+ + + F + T L++ P LL+MVT F R IIV S R +G+ Sbjct: 51 AQLRIDSGGAATGSAGTVNSGLELFVLLTFLALLPTLLMMVTSFTRVIIVLSFARNAIGV 110 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 +PPN V++ LALF+T ++M+P +QP + +I + A+ R P FM Sbjct: 111 PQLPPNQVLLGLALFLTIFIMAPVWQEVNRTALQPYLAGEIAQAEAMDRAVRPLREFMLR 170 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 TRE+DL+LFM + T D + +L+PSF++SEL+ +F++GF+I +PFLII Sbjct: 171 QTRERDLALFMQLGQQPRPRT----PDDVPTWVLVPSFIVSELKTAFQMGFVIFIPFLII 226 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 DMIV++ +M+MGM+MLPP +SLPFKV+ FV++DGW L+V +LV SF Sbjct: 227 DMIVSSALMSMGMIMLPPVIVSLPFKVLLFVMVDGWDLIVRSLVMSF 273 >gi|293410304|ref|ZP_06653880.1| flagellar biosynthetic protein FliP [Escherichia coli B354] gi|291470772|gb|EFF13256.1| flagellar biosynthetic protein FliP [Escherichia coli B354] Length = 245 Score = 214 bits (546), Expect = 7e-54, Method: Composition-based stats. Identities = 100/247 (40%), Positives = 154/247 (62%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 M R A L+ A + L + + P +W V+T T L+ P +L+M Sbjct: 1 MRRLLSVAPVLLWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP + Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ A+++ A+P FM TRE DL LF +A++ + + + RIL+P+++ Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLGLFARLANTG----PLLGPEAVPMRILLPAYVT 176 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236 Query: 239 ENLVKSF 245 +L +SF Sbjct: 237 GSLAQSF 243 >gi|330814980|ref|YP_004358685.1| Flagellar biosynthetic protein FliP [Burkholderia gladioli BSR3] gi|327367373|gb|AEA58729.1| Flagellar biosynthetic protein FliP [Burkholderia gladioli BSR3] Length = 279 Score = 214 bits (546), Expect = 7e-54, Method: Composition-based stats. Identities = 95/216 (43%), Positives = 142/216 (65%), Gaps = 4/216 (1%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P + + V+T + T+LS P +++M+T F R IIV S+LR +G + PPN V++ Sbjct: 67 PNGGTTYSLSVQTMLLLTMLSFLPAIVLMMTSFTRIIIVLSLLRQALGTTTTPPNQVLVG 126 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 LALF+T +VMSP LDR+ G QP + A+QR PF FM TRE DL+LF Sbjct: 127 LALFLTLFVMSPVLDRAYTDGYQPFSAGTLPMDQAVQRGLAPFKTFMLKQTRESDLALFA 186 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 ++ + + + + +L+P+F+ SEL+ F+IGF I +PFLIID++VA+++M+M Sbjct: 187 RISKAP----PMQGPEDVPLPLLVPAFLTSELKTGFQIGFTIFIPFLIIDLVVASVLMSM 242 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMM+ PT+ISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 243 GMMMVSPTTISLPFKLMLFVLVDGWQLLIGSLAQSF 278 >gi|170759449|ref|YP_001787969.1| flagellar biosynthesis protein FliP [Clostridium botulinum A3 str. Loch Maree] gi|169406438|gb|ACA54849.1| flagellar biosynthetic protein FliP [Clostridium botulinum A3 str. Loch Maree] Length = 258 Score = 214 bits (545), Expect = 8e-54, Method: Composition-based stats. Identities = 96/234 (41%), Positives = 149/234 (63%), Gaps = 4/234 (1%) Query: 12 VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71 P+ ++ ++ + + ++ + T+L++ P ++M+T F R I+VF Sbjct: 28 AAPQNTMPIPKINISVDNANNPTEYVDNIKLLIMLTVLTLLPSFIVMMTSFVRTIVVFGF 87 Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131 LR MG PPN V+I LALF+T ++M P IQP M N+IT+ A++ A+P Sbjct: 88 LRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEINTKAIQPYMKNKITQEQAVETGAKP 147 Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191 FM TR+KDL LF+D+A + + T D+ I++P+F+ISEL+ +F+IGFL+ Sbjct: 148 LRQFMLKQTRQKDLKLFVDLAKPNFKVT----KDNAPLYIVVPAFIISELKTAFQIGFLL 203 Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PFLIID++VA+++M+MGM MLPP ISLPFK++ FV++DGW LLV++LV SF Sbjct: 204 FIPFLIIDLVVASVLMSMGMFMLPPVMISLPFKLLLFVMVDGWYLLVKSLVMSF 257 >gi|238755315|ref|ZP_04616658.1| Flagellar biosynthetic protein fliP [Yersinia ruckeri ATCC 29473] gi|238706451|gb|EEP98825.1| Flagellar biosynthetic protein fliP [Yersinia ruckeri ATCC 29473] Length = 262 Score = 214 bits (545), Expect = 8e-54, Method: Composition-based stats. Identities = 94/227 (41%), Positives = 146/227 (64%), Gaps = 6/227 (2%) Query: 21 SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 + L +++ P +W V+T + T LS P L+M+T F R IIV +LR +G Sbjct: 38 AQLPGIISQPLANGGQSWSLPVQTLVLITSLSFLPAALLMMTSFTRIIIVLGLLRNALGT 97 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 S PPN V++ LALF+TF++MSP D+ + P ++I+ AI + A+P FM Sbjct: 98 PSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMDIAIDKGAQPLREFMLR 157 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 TRE DL+L+ +A+ + + RIL+P+++ SEL+ +F+IGF + +PFLII Sbjct: 158 QTRETDLALYARLANMP----AFEGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLII 213 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 D++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 214 DLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 260 >gi|39936951|ref|NP_949227.1| flagellar biosynthesis protein FliP [Rhodopseudomonas palustris CGA009] gi|192292779|ref|YP_001993384.1| flagellar biosynthesis protein FliP [Rhodopseudomonas palustris TIE-1] gi|39650808|emb|CAE29331.1| putative flagellar biosynthesis protein fliP [Rhodopseudomonas palustris CGA009] gi|192286528|gb|ACF02909.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris TIE-1] Length = 254 Score = 214 bits (545), Expect = 8e-54, Method: Composition-based stats. Identities = 110/239 (46%), Positives = 164/239 (68%), Gaps = 4/239 (1%) Query: 7 FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66 + V + A++ + ++ ++ + T+LSIAP +L+M+T F R + Sbjct: 16 VLIIAVLAMIAPAQAQDISINLGGNSPGVTERAIQLIALLTVLSIAPSILVMMTSFTRIV 75 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 +V S+LRT +G + PPN VII+LALF+T +VM PTL +S + GI+PL+ N+I A+ Sbjct: 76 VVLSLLRTALGTATAPPNAVIIALALFLTAFVMGPTLQKSYDEGIKPLIANEIGVDDAMV 135 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 R + P +FM+ N REKDL LF+D++ T + + RIL+P+F+ISEL+R+FE Sbjct: 136 RASGPLRIFMQKNVREKDLKLFLDLSGEPPPAT----PEDLSLRILMPAFLISELKRAFE 191 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGFL+ LPFLIID++VA+I+M+MGMMMLPP +SLPFK+IFFVL+DGWSL+ +LV+S+ Sbjct: 192 IGFLLFLPFLIIDLVVASILMSMGMMMLPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY 250 >gi|253998478|ref|YP_003050541.1| flagellar biosynthesis protein FliP [Methylovorus sp. SIP3-4] gi|253985157|gb|ACT50014.1| flagellar biosynthetic protein FliP [Methylovorus sp. SIP3-4] Length = 258 Score = 214 bits (545), Expect = 8e-54, Method: Composition-based stats. Identities = 96/238 (40%), Positives = 152/238 (63%), Gaps = 6/238 (2%) Query: 10 FLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIA--PILLIMVTCFPRFII 67 L P L A++++ + P + + + + S++ P +L+M+T F R II Sbjct: 24 LLAIPALAHAEAAMPLINAAPGSGGSQNYTLSLQTLLLLTSLSFLPAVLLMMTGFTRIII 83 Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127 V S+LR +G + PPN V++ LALF+TF+VMSP +D+ QPL N+IT A+++ Sbjct: 84 VLSLLRQALGTPTSPPNQVLVGLALFLTFFVMSPVMDKIYVEAYQPLSENKITLQEALEK 143 Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187 A P FM TRE D++LFM ++ R+ + + R+L+P+FM SEL+ +F+I Sbjct: 144 GAAPLKTFMLKQTREADIALFMRIS----RSDAVDGPEQTPLRVLVPAFMTSELKTAFQI 199 Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GF I +PFLIIDM+VA+++M+MGMMM+ P ++LPFK++ FVL+DGW L++ +L +SF Sbjct: 200 GFAIFIPFLIIDMVVASVLMSMGMMMVSPAIVALPFKLMLFVLVDGWQLVLGSLAESF 257 >gi|332343674|gb|AEE57008.1| flagellar biosynthetic protein FliP [Escherichia coli UMNK88] Length = 245 Score = 214 bits (545), Expect = 9e-54, Method: Composition-based stats. Identities = 99/247 (40%), Positives = 153/247 (61%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 M R A L+ A + L + + P +W V+T T L+ P +L+M Sbjct: 1 MRRLLSVAPVLLWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP + Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ A+++ A+P FM RE DL LF +A++ + + + RIL+P+++ Sbjct: 121 ISMQEALEKGAQPLREFMLRQIREADLGLFARLANTG----PLQGPEAVPMRILLPAYVT 176 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236 Query: 239 ENLVKSF 245 +L +SF Sbjct: 237 GSLAQSF 243 >gi|319405407|emb|CBI79026.1| Flagellar biosynthetic protein fliP [Bartonella sp. AR 15-3] Length = 250 Score = 214 bits (545), Expect = 9e-54, Method: Composition-based stats. Identities = 133/246 (54%), Positives = 185/246 (75%), Gaps = 9/246 (3%) Query: 6 FFALFLVTPELVFAKSSLHDVMNIPA------DLSISTWIVRTFGIFTILSIAPILLIMV 59 + L+T + FA+ + + + A + SIS IV+ FG+ TILS+AP LLIMV Sbjct: 8 VLMILLLTTTVAFAQKTGPENASSLAGLFSYPEGSISGRIVQFFGLLTILSVAPGLLIMV 67 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F RF I FS+LRTG+G+ + P NLV+ISLALFM+FYVM+PT + + E G+QPL++N+I Sbjct: 68 TSFTRFAIAFSLLRTGLGLQTTPSNLVMISLALFMSFYVMAPTFNTAWEQGVQPLVSNKI 127 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 +E AI+++++PF FM + REKDL LF+D++ + + +++R+LIP+FMIS Sbjct: 128 SEQQAIEKISQPFREFMISQVREKDLDLFVDLSD---PSLQVKTGSDVDFRVLIPAFMIS 184 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 ELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW+LLV Sbjct: 185 ELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNLLVG 244 Query: 240 NLVKSF 245 +LV+SF Sbjct: 245 SLVRSF 250 >gi|304438440|ref|ZP_07398380.1| flagellar biosynthetic protein FliP [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368523|gb|EFM22208.1| flagellar biosynthetic protein FliP [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 249 Score = 214 bits (545), Expect = 9e-54, Method: Composition-based stats. Identities = 92/240 (38%), Positives = 153/240 (63%), Gaps = 4/240 (1%) Query: 6 FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65 F L + +++ + + ++ + T++S+AP + +M T F R Sbjct: 13 FLLLGVGQASAAPLIPTVNVGVGTSNNPQDVATSMQVLAVLTVMSLAPAIFVMTTSFVRI 72 Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 ++V LR + +VPPN V+I+L+LF+TFY+M+P ++ E GIQP + QIT+ A+ Sbjct: 73 VVVIGFLRNALSTQNVPPNQVVIALSLFLTFYIMAPYWGQANENGIQPYLEGQITQEQAL 132 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185 + + +P FM TRE DL+LF++++ + + + + LIP+F+ISEL+ +F Sbjct: 133 ENIVDPMREFMLRQTRESDLALFVNLSDAPRPD----GPEDVSTFTLIPAFIISELKTAF 188 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +IGF+I +PF++IDMIVA+ +M+MGMMMLPP ISLPFK++ FV++DGW LL+++L+ SF Sbjct: 189 QIGFMIYIPFIVIDMIVASTLMSMGMMMLPPVMISLPFKILLFVMVDGWHLLIQSLIMSF 248 >gi|304398865|ref|ZP_07380735.1| flagellar biosynthetic protein FliP [Pantoea sp. aB] gi|308187300|ref|YP_003931431.1| Flagellar biosynthetic protein fliP [Pantoea vagans C9-1] gi|304353569|gb|EFM17946.1| flagellar biosynthetic protein FliP [Pantoea sp. aB] gi|308057810|gb|ADO09982.1| Flagellar biosynthetic protein fliP [Pantoea vagans C9-1] Length = 244 Score = 214 bits (545), Expect = 9e-54, Method: Composition-based stats. Identities = 98/245 (40%), Positives = 153/245 (62%), Gaps = 4/245 (1%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 M R L+ + A+ ++P + V+T T L+ P +L+M+T Sbjct: 2 MRRLLPLLPLLLLAPVAHAQLPGLVSHSLPNGGQSWSLPVQTLVFITALTFIPAVLLMMT 61 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R IIVF +LR +G S PPN V++ L+LF+TF++M+PT D+ + P ++I+ Sbjct: 62 SFTRIIIVFGLLRNALGTPSAPPNQVLLGLSLFLTFFIMAPTFDKIYQDAYLPFSQDKIS 121 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 AI + A+P FM TRE DL+LF +A++ I + + RIL+P+++ SE Sbjct: 122 MDVAIDKGAQPLREFMLRQTREADLALFARLANT----APIAGPEAVPMRILLPAYVTSE 177 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP SI+LPFK++ FVL+DGW LLV + Sbjct: 178 LKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASIALPFKLMLFVLVDGWQLLVGS 237 Query: 241 LVKSF 245 L +SF Sbjct: 238 LAQSF 242 >gi|315657501|ref|ZP_07910383.1| flagellar biosynthetic protein FliP [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315491973|gb|EFU81582.1| flagellar biosynthetic protein FliP [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 422 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 83/209 (39%), Positives = 132/209 (63%), Gaps = 4/209 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + V F + T+LSIAP LL+M+T F + IV ++ R MG+ +PPN VI LA+F++ Sbjct: 217 STAVLVFLLITVLSIAPSLLLMMTSFTKIFIVLAMARNAMGLNQIPPNQVISGLAIFLSL 276 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 ++MSPT+ + +QP M+ +I + +P FM TRE+D++L A + Sbjct: 277 FIMSPTITSIWQDAVQPYMDGKIQVQDMFKLAEKPVREFMGPLTREEDIALMTRAADRPN 336 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 + + L+P+FMISE+R +F IGF++ +PFL+ID++V +M+MGMMMLPP Sbjct: 337 P----PSLEETPFTTLVPAFMISEVRSAFIIGFVVFIPFLVIDLVVGAALMSMGMMMLPP 392 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +S+PFKV+ FV++DGW LL + L+ ++ Sbjct: 393 VMVSMPFKVLLFVMVDGWGLLTKTLIGTY 421 >gi|328543163|ref|YP_004303272.1| flagellar transport protein FliP [polymorphum gilvum SL003B-26A1] gi|326412909|gb|ADZ69972.1| Flagellar transport protein FliP [Polymorphum gilvum SL003B-26A1] Length = 245 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 106/226 (46%), Positives = 159/226 (70%), Gaps = 4/226 (1%) Query: 20 KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79 + + S++ V+ + T+LS+AP +L+MVT F R ++V S+LR+ +G+ Sbjct: 21 AGAQDLTIGFGEGASLTERAVQLVALLTVLSLAPSILVMVTSFTRIVVVLSLLRSAIGLQ 80 Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139 + PPN+V++SLALF+T ++M+PTL + E G+QPL+ I A +R + PF FM + Sbjct: 81 TAPPNMVMVSLALFLTAFIMAPTLQVAYEEGVQPLVEGTIEFDQAFERASTPFHAFMLSQ 140 Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199 REKDL+LF +++ T + + ++ LIP+FMISELRR+FEIGFL+ LPFLIID Sbjct: 141 VREKDLALFQELSGQEAPETQ----EDLSFQTLIPAFMISELRRAFEIGFLLYLPFLIID 196 Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++VA+++M+MGMMMLPP ISLPFK+IFFVL+DGW+L+ +LV+SF Sbjct: 197 LVVASVLMSMGMMMLPPVVISLPFKLIFFVLVDGWNLVAGSLVRSF 242 >gi|126442020|ref|YP_001057087.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei 668] gi|126453057|ref|YP_001064317.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei 1106a] gi|134281410|ref|ZP_01768118.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 305] gi|217423958|ref|ZP_03455458.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 576] gi|226193182|ref|ZP_03788792.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei Pakistan 9] gi|237814425|ref|YP_002898876.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei MSHR346] gi|242316101|ref|ZP_04815117.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 1106b] gi|254184095|ref|ZP_04890686.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 1655] gi|254186561|ref|ZP_04893078.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei Pasteur 52237] gi|254194632|ref|ZP_04901063.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei S13] gi|42766712|gb|AAS45439.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei] gi|126221513|gb|ABN85019.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 668] gi|126226699|gb|ABN90239.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 1106a] gi|134247077|gb|EBA47163.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 305] gi|157934246|gb|EDO89916.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei Pasteur 52237] gi|169651382|gb|EDS84075.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei S13] gi|184214627|gb|EDU11670.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 1655] gi|217393021|gb|EEC33043.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 576] gi|225934782|gb|EEH30759.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei Pakistan 9] gi|237505052|gb|ACQ97370.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei MSHR346] gi|242139340|gb|EES25742.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 1106b] Length = 276 Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 94/216 (43%), Positives = 140/216 (64%), Gaps = 4/216 (1%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P + + V+T + T+LS P +L+M+T F R IIV S+LR +G S PPN V++ Sbjct: 64 PNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQAIGTASTPPNQVLVG 123 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 LALF+T +VMSP LDR+ +P + A+QR PF FM TRE DL+LF Sbjct: 124 LALFLTLFVMSPVLDRAYNDAYKPFSEGTLQMDQAVQRGTAPFKAFMLKQTRETDLALFA 183 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 ++ + + + + +L+P+F+ SEL+ F+IGF I +PFLIIDM+VA+++M+M Sbjct: 184 KIS----KAAPMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSM 239 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMM+ P ++SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 240 GMMMVSPATVSLPFKLMLFVLVDGWQLLIGSLAQSF 275 >gi|312173310|emb|CBX81565.1| Flagellar biosynthetic protein FliP precursor [Erwinia amylovora ATCC BAA-2158] Length = 247 Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 95/244 (38%), Positives = 152/244 (62%), Gaps = 4/244 (1%) Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61 + + + P + ++ + P T V+T + + L+ P +L+M+T Sbjct: 6 VLRTLLLIAGMLPAVGALAANSDITLASPQGNGGWTLPVQTLVLLSSLTFLPAILLMMTG 65 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F R IIV ++R +G + PPN V++ LALF+TFYVMSP ++ E QPL ++IT Sbjct: 66 FTRIIIVLGLMRNALGTPTAPPNQVLVGLALFLTFYVMSPVFNQIYEQAWQPLQEDKITM 125 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 A+++ +P FM + TRE DL++F MA + + + + IL+P+F+ SEL Sbjct: 126 EVALEQGVKPLRAFMLDQTRENDLAMFAQMA----KAGEFKGPEEVPLGILVPAFVTSEL 181 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 + +F+IGF I +PFLIID++VA+I+MA+GMMM+PP +I+LPFK++ FVL+DGW LL+ +L Sbjct: 182 KTAFQIGFTIFIPFLIIDLVVASILMALGMMMVPPATIALPFKLMLFVLVDGWQLLMGSL 241 Query: 242 VKSF 245 +SF Sbjct: 242 AQSF 245 >gi|82702484|ref|YP_412050.1| flagellar biosynthesis protein FliP [Nitrosospira multiformis ATCC 25196] gi|82410549|gb|ABB74658.1| flagellar biosynthetic protein FliP [Nitrosospira multiformis ATCC 25196] Length = 262 Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 95/243 (39%), Positives = 152/243 (62%), Gaps = 8/243 (3%) Query: 7 FALFLVTPELVFAKS--SLHDVMNIPADLSISTWIVRTFGIFTILSIA--PILLIMVTCF 62 L L TP + A++ + PA T+ + + + S+ P +L+M+T F Sbjct: 23 AVLLLTTPVVALAQAKGGFPAFSSTPAPRGGQTYSLSLQTLLLLTSLTFLPAVLLMMTGF 82 Query: 63 PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122 R IIV S+LR +G S PPN V++ LALF+TF+VMSP D+ + QP + N++T Sbjct: 83 TRVIIVLSLLRQALGTQSSPPNQVLVGLALFLTFFVMSPVFDKIYQDAYQPYVENRMTME 142 Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182 A+++ A P FM TRE DL+LF+ ++ + + + R+L+P+F+ SEL+ Sbjct: 143 QALEKGAVPLKAFMLKQTRETDLALFVKLSGRPQ----LNGPEEVSLRVLVPAFVTSELK 198 Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242 +F+IGF + +PFLIIDM+VA+++M+MGMMM+ P ++LPFK++ FVL+DGW +L+ +L Sbjct: 199 TAFQIGFAVFIPFLIIDMVVASVLMSMGMMMVSPALVALPFKIMLFVLVDGWHMLIGSLA 258 Query: 243 KSF 245 +SF Sbjct: 259 ESF 261 >gi|312172107|emb|CBX80364.1| Flagellar biosynthetic protein FliP precursor [Erwinia amylovora ATCC BAA-2158] Length = 245 Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 100/247 (40%), Positives = 157/247 (63%), Gaps = 9/247 (3%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 +I ALF++ P + + L +++ P +W V+T T L+ P +L+M Sbjct: 4 LIPLLLPALFMLAPNV---YAQLPGLISQPTANGGQSWSLPVQTLVFITSLTFLPAILLM 60 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIVF +LR +G S PPN V++ L+LF+TF++M P D+ QP ++ Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLSLFLTFFIMGPVFDKIYTDAYQPFSEDK 120 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ AI + A+P FM TRE DL+LF +A++ I + + RIL+P+++ Sbjct: 121 ISMQEAIDKGAQPLREFMLRQTREADLALFARLANTP----PIAGPEAVPMRILLPAYVT 176 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV Sbjct: 177 SELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236 Query: 239 ENLVKSF 245 +L +SF Sbjct: 237 SSLAQSF 243 >gi|296103568|ref|YP_003613714.1| flagellar biosynthesis protein FliP [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058027|gb|ADF62765.1| flagellar biosynthesis protein FliP [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 245 Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 96/247 (38%), Positives = 158/247 (63%), Gaps = 9/247 (3%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 ++ + L P + + L +++ P +W V+T T L+ P +L+M Sbjct: 4 LLSLTLAGVGLFAPAV---YAQLPGLVSTPLAGGGQSWSLPVQTLVFITSLTFIPAILLM 60 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP ++ Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYTDAYQPFSEDK 120 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ A+++ A+P FM TRE DL+LF ++++ ++ + + RIL+P+++ Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLALFARLSNTG----ELQGPEAVPMRILLPAYVT 176 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKIMLFVLVDGWQLLV 236 Query: 239 ENLVKSF 245 +L +SF Sbjct: 237 SSLAQSF 243 >gi|153941323|ref|YP_001391949.1| flagellar biosynthesis protein FliP [Clostridium botulinum F str. Langeland] gi|152937219|gb|ABS42717.1| flagellar biosynthetic protein FliP [Clostridium botulinum F str. Langeland] gi|295319967|gb|ADG00345.1| flagellar biosynthetic protein FliP [Clostridium botulinum F str. 230613] Length = 258 Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 96/234 (41%), Positives = 149/234 (63%), Gaps = 4/234 (1%) Query: 12 VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71 P+ ++ ++ + + ++ + T+L++ P ++M+T F R I+VF Sbjct: 28 AAPQNTMPIPKINISVDNANNPTEYVDNIKLLIMLTVLTLLPSFIVMMTSFVRTIVVFGF 87 Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131 LR MG PPN V+I LALF+T ++M P IQP M N+IT+ A++ A+P Sbjct: 88 LRNAMGTQQSPPNQVMIGLALFLTLFIMYPVYSEVNTKAIQPYMKNKITQEQAVEIGAKP 147 Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191 FM TR+KDL LF+D+A + + T D+ I++P+F+ISEL+ +F+IGFL+ Sbjct: 148 LRQFMLKQTRQKDLKLFVDLAKPNFKVT----KDNAPLYIVVPAFIISELKTAFQIGFLL 203 Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PFLIID++VA+++M+MGM MLPP ISLPFK++ FV++DGW LLV++LV SF Sbjct: 204 FIPFLIIDLVVASVLMSMGMFMLPPVMISLPFKLLLFVMVDGWYLLVKSLVMSF 257 >gi|315654594|ref|ZP_07907500.1| flagellar biosynthetic protein FliP [Mobiluncus curtisii ATCC 51333] gi|315491058|gb|EFU80677.1| flagellar biosynthetic protein FliP [Mobiluncus curtisii ATCC 51333] Length = 422 Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 83/209 (39%), Positives = 132/209 (63%), Gaps = 4/209 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + V F + T+LSIAP LL+M+T F + IV ++ R MG+ +PPN VI LA+F++ Sbjct: 217 STAVLVFLLITVLSIAPSLLLMMTSFTKIFIVLAMARNAMGLNQIPPNQVISGLAIFLSL 276 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 ++MSPT+ + +QP M+ +I + +P FM TRE+D++L A + Sbjct: 277 FIMSPTITSIWQDAVQPYMDGKIQVQDMFKLAEKPVREFMGPLTREEDIALMTRAADRPN 336 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 + + L+P+FMISE+R +F IGF++ +PFL+ID++V +M+MGMMMLPP Sbjct: 337 P----PSLEETPFTTLVPAFMISEVRSAFIIGFVVFIPFLVIDLVVGAALMSMGMMMLPP 392 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +S+PFKV+ FV++DGW LL + L+ ++ Sbjct: 393 VMVSMPFKVLLFVMVDGWGLLTKTLIGTY 421 >gi|311992339|gb|ADQ26743.1| flagellar export component [Aeromonas hydrophila] Length = 258 Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 95/232 (40%), Positives = 144/232 (62%), Gaps = 7/232 (3%) Query: 16 LVFAKSSLHDVM--NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73 L A+ + V + + ++ + T LS P ++IM+T F R IIV ILR Sbjct: 26 LALAQDGMSAVTIKTMADGSQEYSLTLQVLALMTALSFLPAMVIMMTSFTRIIIVLGILR 85 Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133 +G+ P N V+I +ALFM+F++MSP LDR +QP + I A+++ P Sbjct: 86 QAIGLQQSPSNQVLIGIALFMSFFIMSPVLDRINNEALQPYLAETIQAKEALEKAELPIH 145 Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193 FM TR KDL+ FM++A N + K + R+LIP+F+ SEL+ +F+IGF++ L Sbjct: 146 QFMLAQTRIKDLNTFMEIA-----NVQVDKPADVPLRVLIPAFVTSELKTAFQIGFMLFL 200 Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 PFL+ID++VA+I+MAMGMMML P +SLPFK++ FV++DGW+L++ +L SF Sbjct: 201 PFLVIDLVVASILMAMGMMMLSPMLVSLPFKLMLFVMVDGWNLILGSLANSF 252 >gi|306817703|ref|ZP_07451445.1| flagellar biosynthetic protein FliP [Mobiluncus mulieris ATCC 35239] gi|304649517|gb|EFM46800.1| flagellar biosynthetic protein FliP [Mobiluncus mulieris ATCC 35239] Length = 425 Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 81/209 (38%), Positives = 133/209 (63%), Gaps = 4/209 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 T V F + T+LS+AP LL+M+T F + IV ++ R +G+ +PP V+ LA+F++ Sbjct: 220 TTTVLVFLLITVLSVAPSLLLMMTSFTKIFIVLAMARNALGLNQIPPTQVLSGLAIFLSL 279 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 ++M+PT++ +QPL + +I + +PF FM TRE+D++L A+ + Sbjct: 280 FIMAPTVNTLWTDVVQPLTDGKIEVQEVFKLGEKPFRDFMGPLTREEDIALMTRAANRPN 339 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 D + L+P+FMISE+R +F IGF++ +PFL+ID++V +M+MGMMMLPP Sbjct: 340 PE----SLDKTPFTTLVPAFMISEVRSAFIIGFVVFIPFLVIDLVVGAALMSMGMMMLPP 395 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +SLPFKV+ FV++DGW +L + L+ ++ Sbjct: 396 VMVSLPFKVLLFVMVDGWGMLTQTLIGTY 424 >gi|117618724|ref|YP_855914.1| flagellar biosynthesis protein FliP [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560131|gb|ABK37079.1| flagellar biosynthetic protein FliP [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 259 Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 95/232 (40%), Positives = 144/232 (62%), Gaps = 7/232 (3%) Query: 16 LVFAKSSLHDVM--NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73 L A+ + V + + ++ + T LS P ++IM+T F R IIV ILR Sbjct: 27 LALAQDGMSAVTIKTMADGSQEYSLTLQVLALMTALSFLPAIVIMMTSFTRIIIVLGILR 86 Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133 +G+ P N V+I +ALFM+F++MSP LDR +QP + I A+++ P Sbjct: 87 QAIGLQQSPSNQVLIGIALFMSFFIMSPVLDRINNEALQPYLAETIQAKEALEKAELPIH 146 Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193 FM TR KDL+ FM++A N + K + R+LIP+F+ SEL+ +F+IGF++ L Sbjct: 147 QFMLAQTRIKDLNTFMEIA-----NVQVDKPADVPLRVLIPAFVTSELKTAFQIGFMLFL 201 Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 PFL+ID++VA+I+MAMGMMML P +SLPFK++ FV++DGW+L++ +L SF Sbjct: 202 PFLVIDLVVASILMAMGMMMLSPMLVSLPFKLMLFVMVDGWNLILGSLANSF 253 >gi|290475714|ref|YP_003468603.1| flagellar biosynthesis protein [Xenorhabdus bovienii SS-2004] gi|289175036|emb|CBJ81839.1| flagellar biosynthesis [Xenorhabdus bovienii SS-2004] Length = 269 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 95/229 (41%), Positives = 145/229 (63%), Gaps = 6/229 (2%) Query: 19 AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 A ++L +++ P +W V+T T L P L+M+T F R IIV +LR + Sbjct: 43 AAAALPGIISQPMANGGQSWSLPVQTLVFITALGFIPAALLMMTSFTRIIIVLGLLRNAL 102 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G S PPN ++I LALFMTF++MSP D+ + P ++I+ A+ + A+P FM Sbjct: 103 GTPSAPPNQIMIGLALFMTFFIMSPVFDKVYQDAYLPFSEDKISLEAALDKGAQPLRQFM 162 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 TR+ DL+LF +A D + R+L+P+F+ SEL+ +F+IGF + +PFL Sbjct: 163 LRQTRQTDLALFARLAD----QDAFETADSVPIRVLVPAFITSELKTAFQIGFTLFIPFL 218 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 219 IIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 267 >gi|330828809|ref|YP_004391761.1| flagellar biosynthetic protein FliP [Aeromonas veronii B565] gi|328803945|gb|AEB49144.1| Flagellar biosynthetic protein FliP [Aeromonas veronii B565] Length = 257 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 98/241 (40%), Positives = 146/241 (60%), Gaps = 5/241 (2%) Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64 LF P L S V + + ++ + T LS P ++IM+T F R Sbjct: 17 LLIPLFCSWPALAQDAMSAVTVKTMGDGSQEYSLTLQVLALMTALSFLPAMVIMMTSFTR 76 Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124 I+V ILR +G+ P N V+I +ALFM+F++MSP LDR + +QP + I A Sbjct: 77 IIVVLGILRQAIGLQQSPSNQVLIGIALFMSFFIMSPVLDRINDEALQPYLAETIQAKEA 136 Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184 ++R P FM TR KDL+ FM++A N + K + R+LIP+F+ SEL+ + Sbjct: 137 LERAELPIHQFMLAQTRIKDLNTFMEIA-----NVQVEKPADVPLRVLIPAFVTSELKTA 191 Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 F+IGF++ LPFL+ID++VA+I+MAMGMMML P +SLPFK++ FV++DGW+L++ +L S Sbjct: 192 FQIGFMLFLPFLVIDLVVASILMAMGMMMLSPMIVSLPFKLMLFVMVDGWNLILGSLANS 251 Query: 245 F 245 F Sbjct: 252 F 252 >gi|322806978|emb|CBZ04548.1| flagellar biosynthesis protein FliP [Clostridium botulinum H04402 065] Length = 258 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 96/234 (41%), Positives = 149/234 (63%), Gaps = 4/234 (1%) Query: 12 VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71 P+ ++ ++ + + ++ + T+L++ P ++M+T F R I+VF Sbjct: 28 AAPQNTMPIPKINISVDNANNPTEYVDNIKLLIMLTVLTLLPSFIVMMTSFVRTIVVFGF 87 Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131 LR MG PPN V+I LALF+T ++M P IQP M N+IT+ A++ A+P Sbjct: 88 LRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEINTKAIQPYMKNKITQEQAVEIGAKP 147 Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191 FM TR+KDL LF+D+A + + T D+ I++P+F+ISEL+ +F+IGFL+ Sbjct: 148 LRQFMLKQTRQKDLKLFVDLAKPNFKVT----KDNAPLYIVVPAFIISELKTAFQIGFLL 203 Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PFLIID++VA+++M+MGM MLPP ISLPFK++ FV++DGW LLV++LV SF Sbjct: 204 FIPFLIIDLVVASVLMSMGMFMLPPVMISLPFKLLLFVMVDGWYLLVKSLVMSF 257 >gi|170694404|ref|ZP_02885558.1| flagellar biosynthetic protein FliP [Burkholderia graminis C4D1M] gi|170140827|gb|EDT09001.1| flagellar biosynthetic protein FliP [Burkholderia graminis C4D1M] Length = 284 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 102/246 (41%), Positives = 153/246 (62%), Gaps = 7/246 (2%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVT 60 A+ L P L FA+++ N P + + V+T + T+LS P +++M+T Sbjct: 43 VVLPAIMLALPTLSFAQTAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMVLMMT 102 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R IIV S+LR +G + PPN V++ LALF+T +VMSP LD++ G +P + Sbjct: 103 SFTRIIIVLSLLRQALGTTTTPPNQVLVGLALFLTLFVMSPVLDKAYTDGYKPFSEGTVP 162 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 TA+ R PF FM TRE DL+LF ++H + + + +L+PSF+ SE Sbjct: 163 METAVSRGLAPFKTFMLRQTRESDLALFARISH----AAPMQGPEDVPLSLLVPSFVTSE 218 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ F+IGF I +PFLIIDM+VA+++M+MGMMM+ P +ISLPFK++ FVL+DGW LL+ + Sbjct: 219 LKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATISLPFKLMLFVLVDGWQLLLGS 278 Query: 241 LVKSFI 246 L +SF+ Sbjct: 279 LAQSFV 284 >gi|170748101|ref|YP_001754361.1| flagellar biosynthetic protein FliP [Methylobacterium radiotolerans JCM 2831] gi|170654623|gb|ACB23678.1| flagellar biosynthetic protein FliP [Methylobacterium radiotolerans JCM 2831] Length = 245 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 129/246 (52%), Positives = 169/246 (68%), Gaps = 3/246 (1%) Query: 1 MIRYCFFAL-FLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 M+R F A L+ A+S D + P + S+S +++ + T+LSIAP LL+MV Sbjct: 1 MLRRVFLASPLLLVATAATAQSFSLDQVLPPGNGSVSGRMIQLIALMTVLSIAPGLLVMV 60 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F RF++ S LR+G+G+ S P NLV+ISL+LFMTFYVM PT DR+ + G++PL N+I Sbjct: 61 TSFTRFVVALSFLRSGLGLQSAPANLVLISLSLFMTFYVMGPTFDRAWQDGVRPLTENRI 120 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 TE A +V PF FM + R KDL F ++A S+ RILIP+FMIS Sbjct: 121 TEEEAFAKVTAPFRDFMLAHVRPKDLDTFAEIAASNLSKAPDGGRTD--LRILIPAFMIS 178 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 ELRR FEIGFLI LPFL+IDM++A +VM+MGMMMLPPT ISLPFK++FFVLIDGW++LV Sbjct: 179 ELRRGFEIGFLIALPFLVIDMVIAVLVMSMGMMMLPPTVISLPFKILFFVLIDGWNMLVS 238 Query: 240 NLVKSF 245 LVKS+ Sbjct: 239 GLVKSY 244 >gi|304390236|ref|ZP_07372190.1| flagellar biosynthesis protein FliP [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326718|gb|EFL93962.1| flagellar biosynthesis protein FliP [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 422 Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats. Identities = 83/209 (39%), Positives = 132/209 (63%), Gaps = 4/209 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + V F + T+LSIAP LL+M+T F + IV ++ R MG+ +PPN VI LA+F++ Sbjct: 217 STAVLVFLLITVLSIAPSLLLMMTSFTKIFIVLAMARNAMGLNQLPPNQVISGLAIFLSL 276 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 ++MSPT+ + +QP M+ +I + +P FM TRE+D++L A + Sbjct: 277 FIMSPTITSIWQDAVQPYMDGKIQVQDMFKLAEKPVREFMGPLTREEDIALMTRAADRPN 336 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 + + L+P+FMISE+R +F IGF++ +PFL+ID++V +M+MGMMMLPP Sbjct: 337 P----PSLEETPFTTLVPAFMISEVRSAFIIGFVVFIPFLVIDLVVGAALMSMGMMMLPP 392 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +S+PFKV+ FV++DGW LL + L+ ++ Sbjct: 393 VMVSMPFKVLLFVMVDGWGLLTKTLIGTY 421 >gi|298346006|ref|YP_003718693.1| flagellar biosynthesis protein FliP [Mobiluncus curtisii ATCC 43063] gi|298236067|gb|ADI67199.1| flagellar biosynthesis protein FliP [Mobiluncus curtisii ATCC 43063] Length = 422 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 83/209 (39%), Positives = 132/209 (63%), Gaps = 4/209 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + V F + T+LSIAP LL+M+T F + IV ++ R MG+ +PPN VI LA+F++ Sbjct: 217 STAVLVFLLITVLSIAPSLLLMMTSFTKIFIVLAMARNAMGLNQIPPNQVISGLAIFLSL 276 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 ++MSPT+ + +QP M+ +I + +P FM TRE+D++L A + Sbjct: 277 FIMSPTITSIWQDAVQPYMDGKIQVQDMFKLAEKPVREFMGPLTREEDIALMTRAADRPN 336 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 + + L+P+FMISE+R +F IGF++ +PFL+ID++V +M+MGMMMLPP Sbjct: 337 P----PSLEETPFTTLVPAFMISEVRSAFIIGFVVFIPFLVIDLVVGAALMSMGMMMLPP 392 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +S+PFKV+ FV++DGW LL + L+ ++ Sbjct: 393 VMVSMPFKVLLFVMVDGWGLLTKTLIGTY 421 >gi|110632650|ref|YP_672858.1| flagellar biosynthesis protein FliP [Mesorhizobium sp. BNC1] gi|110283634|gb|ABG61693.1| flagellar biosynthetic protein FliP [Chelativorans sp. BNC1] Length = 246 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 138/229 (60%), Positives = 177/229 (77%), Gaps = 2/229 (0%) Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 A++ + A+ S +I++ FG+ T+LSIAP +LIMVT F RF+IVFSILRTG+ Sbjct: 19 AAAQTLDLGALAGQANGSTIGYIIQIFGLLTVLSIAPGILIMVTSFTRFVIVFSILRTGI 78 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G+ S P NL+++SLALFMTFYVM+PT DR+ G++PLM NQI ETTA++R+AEPF FM Sbjct: 79 GLPSTPANLILVSLALFMTFYVMAPTFDRAWSEGVRPLMANQIDETTAVERIAEPFRAFM 138 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 N RE+D +LF D+A + R D + R+LIP+FMISE+RR FEIGFLI+LPFL Sbjct: 139 SANVREEDYTLFADLA--AERGGIQQTTDQADLRVLIPAFMISEIRRGFEIGFLIVLPFL 196 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +ID+IVATI MAMGMMMLPPT ISLPFK++FFVLIDGW+LLV +LV+SF Sbjct: 197 VIDLIVATITMAMGMMMLPPTVISLPFKILFFVLIDGWNLLVGSLVRSF 245 >gi|328496288|gb|AEB21292.1| FliP [Yersinia ruckeri] Length = 263 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 94/227 (41%), Positives = 146/227 (64%), Gaps = 6/227 (2%) Query: 21 SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 + L +++ P +W V+T + T LS P L+M+T F R IIV +LR +G Sbjct: 39 AQLPGIISQPLANGGQSWSLPVQTLVLITSLSFLPAALLMMTSFTRIIIVLGLLRNALGT 98 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 S PPN V++ LALF+TF++MSP D+ + P ++I+ AI + A+P FM Sbjct: 99 PSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMDIAIDKGAQPLREFMLR 158 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 TRE DL+L+ +A+ + + RIL+P+++ SEL+ +F+IGF + +PFLII Sbjct: 159 QTRETDLALYARLANMP----AFEGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLII 214 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 D++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 215 DLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 261 >gi|330445376|ref|ZP_08309028.1| flagellar biosynthetic protein FliP [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489567|dbj|GAA03525.1| flagellar biosynthetic protein FliP [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 282 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 94/221 (42%), Positives = 141/221 (63%), Gaps = 5/221 (2%) Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84 V P + ++ + T L P ++I++T F R ++V SILR MG+ P N Sbjct: 65 SVTVNPDGSEDYSVTLQILALMTALGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSN 124 Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144 VII +ALF+TF+VMSP +D+ +QP +N QIT A+++ +P FM TR KD Sbjct: 125 QVIIGIALFLTFFVMSPVIDKINTEAVQPYINEQITAKQALEKAEDPMRQFMLKQTRVKD 184 Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204 L F++M+ S+ ++ +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+ Sbjct: 185 LETFVNMSGST-----ADDPQNVPLTVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVAS 239 Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 I+MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 240 ILMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 280 >gi|307945658|ref|ZP_07660994.1| flagellar biosynthetic protein FliP [Roseibium sp. TrichSKD4] gi|307771531|gb|EFO30756.1| flagellar biosynthetic protein FliP [Roseibium sp. TrichSKD4] Length = 231 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 106/229 (46%), Positives = 167/229 (72%), Gaps = 4/229 (1%) Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 ++A ++ + D +++ V+ + T+LS+AP +LIMVT F R ++V S+LR+ + Sbjct: 4 IWAANAQEITIGFGDDTTLTERAVQLLALLTVLSLAPSILIMVTSFTRIVVVLSLLRSAI 63 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G+ + PPN+V+ISLA+F+T ++M+PTL ++ G+QPL+++ I A +R ++PF FM Sbjct: 64 GLQTAPPNMVMISLAMFLTAFIMAPTLQKAYNDGVQPLIDDDIEFNQAFERASDPFRQFM 123 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 + REKDL+LF +++ +T + +E L+P+FMISEL+R+FEIGFL+ LPFL Sbjct: 124 LSQVREKDLALFQELSGRPAPDT----PEELELSTLVPAFMISELKRAFEIGFLLYLPFL 179 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IID+++A+++M+MGMMMLPP ISLPFK+IFFVL+DGW+L+ +LVKSF Sbjct: 180 IIDLVIASVLMSMGMMMLPPVVISLPFKLIFFVLVDGWNLVAGSLVKSF 228 >gi|254785480|ref|YP_003072909.1| flagellar biosynthesis protein FliP [Teredinibacter turnerae T7901] gi|237683712|gb|ACR10976.1| flagellar biosynthetic protein FliP [Teredinibacter turnerae T7901] Length = 283 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 91/209 (43%), Positives = 134/209 (64%), Gaps = 4/209 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 T ++ + T L+ P +L+M+T F R IIVF+ILR MG+ P N ++I LALF+T Sbjct: 77 TVTLQILMLMTALTFLPAILMMMTSFTRIIIVFAILRQAMGLQQSPSNQILIGLALFLTL 136 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 ++M+P LD +QP MN Q++ A+ PF FM NTRE DL LF + Sbjct: 137 FIMTPVLDEVNRTALQPYMNEQMSARQALDNAKLPFHAFMIANTRESDLDLFFRIGDI-- 194 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 + + + +L+P+F+ SEL+ +F+IGF+I +PFL+ID++VA+++MAMGMMML P Sbjct: 195 --APVATPQDVPFTVLMPAFVTSELKTAFQIGFIIFIPFLVIDIVVASVLMAMGMMMLSP 252 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLPFK++ FVL+DGW L++ L SF Sbjct: 253 LIISLPFKIMLFVLVDGWGLIMGTLAASF 281 >gi|224438396|ref|ZP_03659323.1| flagellar biosynthesis protein FliP [Helicobacter cinaedi CCUG 18818] Length = 274 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 103/224 (45%), Positives = 149/224 (66%), Gaps = 4/224 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 S+ + P + + + I T+L IAP L++++T F R +IVF+ LRT +G Sbjct: 54 SVDLSLTAPQEPTELVATLNIVLIITLLVIAPSLVLVMTSFTRIVIVFAFLRTALGTQQS 113 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PP V++SLAL +TF++M P +S E+GI+P QI+ A +R PF FM NTR Sbjct: 114 PPTQVLVSLALVLTFFIMEPVATKSYEVGIKPYTEKQISYDEAFERAIVPFKDFMIKNTR 173 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 EKDL+LF + + + T D + +LIP+FMISEL+ +F IGFL+ LPFL+IDM+ Sbjct: 174 EKDLALFFRIRNLENPQT----VDDVPLTVLIPAFMISELKTAFWIGFLLYLPFLVIDMV 229 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +++++MAMGMMMLPP ISLPFK++ FVL+DGW+LL+ NLV+ F Sbjct: 230 ISSVLMAMGMMMLPPVMISLPFKILVFVLVDGWNLLIGNLVQGF 273 >gi|292489152|ref|YP_003532039.1| flagellar biosynthetic protein FliP [Erwinia amylovora CFBP1430] gi|292900270|ref|YP_003539639.1| flagellar biosynthetic protein [Erwinia amylovora ATCC 49946] gi|291200118|emb|CBJ47244.1| flagellar biosynthetic protein [Erwinia amylovora ATCC 49946] gi|291554586|emb|CBA22219.1| Flagellar biosynthetic protein FliP precursor [Erwinia amylovora CFBP1430] Length = 247 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 95/244 (38%), Positives = 152/244 (62%), Gaps = 4/244 (1%) Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61 + + + P + ++ + P T V+T + + L+ P +L+M+T Sbjct: 6 VLRTLLLIAGMLPAVGALAANSDITLASPQGNGGWTLPVQTLVLLSSLTFLPAILLMMTG 65 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F R IIV ++R +G + PPN V++ LALF+TFYVMSP ++ E QPL ++IT Sbjct: 66 FTRIIIVLGLMRNALGTPTSPPNQVLVGLALFLTFYVMSPVFNQIYEQAWQPLQEDKITM 125 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 A+++ +P FM + TRE DL++F MA + + + + IL+P+F+ SEL Sbjct: 126 EVALEQGVKPLRAFMLDQTRENDLAMFAQMA----KAGEFKGPEEVPLGILVPAFVTSEL 181 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 + +F+IGF I +PFLIID++VA+I+MA+GMMM+PP +I+LPFK++ FVL+DGW LL+ +L Sbjct: 182 KTAFQIGFTIFIPFLIIDLVVASILMALGMMMVPPATIALPFKLMLFVLVDGWQLLMGSL 241 Query: 242 VKSF 245 +SF Sbjct: 242 AQSF 245 >gi|319781675|ref|YP_004141151.1| flagellar biosynthetic protein FliP [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167563|gb|ADV11101.1| flagellar biosynthetic protein FliP [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 243 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 131/245 (53%), Positives = 177/245 (72%), Gaps = 3/245 (1%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 M ++ + + A L AD + +I++ FG+ T+LS+AP LLIMVT Sbjct: 1 MRKFLLATAMIAAATSIAAAQQLDLGGIGKADGTTVGYIIQMFGLLTVLSVAPGLLIMVT 60 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F RF+I FSILR G+G+ S P NL++ISL+LFMTFYVM+PT D++ G++PLM+NQIT Sbjct: 61 SFTRFVIAFSILRAGIGLQSTPANLILISLSLFMTFYVMAPTFDQAWNTGVKPLMDNQIT 120 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 +T A ++++PF FM +N R+KD LF D+A + D ++ RIL+P+FMISE Sbjct: 121 QTEAFDKISDPFRTFMLHNVRDKDFDLFADLARERGQT---VSRDTVDLRILVPAFMISE 177 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 +RR FEIGFLI+LPFL+ID+IVATI MAMGMMMLPPT +SLPFK++FFVLIDGW+LLV + Sbjct: 178 IRRGFEIGFLIVLPFLVIDLIVATITMAMGMMMLPPTVVSLPFKILFFVLIDGWNLLVGS 237 Query: 241 LVKSF 245 LV+SF Sbjct: 238 LVRSF 242 >gi|134300235|ref|YP_001113731.1| flagellar biosynthesis protein FliP [Desulfotomaculum reducens MI-1] gi|134052935|gb|ABO50906.1| flagellar biosynthetic protein FliP [Desulfotomaculum reducens MI-1] Length = 257 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 97/250 (38%), Positives = 152/250 (60%), Gaps = 9/250 (3%) Query: 1 MIRYCFFALFLVTPELVFAKS-----SLHDVMNIPADLSISTWIVRTFGIFTILSIAPIL 55 +I L + P VFA+ S++ + + V+ T+LS+ P Sbjct: 11 IIIVLTALLLFLIPNGVFAEPLIPIPSINLNVETAQEPQQVVDSVKLLIFLTLLSMVPAF 70 Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115 L+M+T F R I+V S LR+ +G PPN V+I LALF+T ++M+P + IQP + Sbjct: 71 LMMLTSFTRIIVVLSFLRSALGTQQTPPNQVLIGLALFLTIFIMNPVYQDINKNSIQPYL 130 Query: 116 NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPS 175 NQ+T A + A+P FM TREKDL LF+++A + + +L+P+ Sbjct: 131 ANQLTYEQATDQAAKPLRNFMVRQTREKDLGLFLNIAKMDKPK----NANEVPMSVLVPA 186 Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235 F+ISEL+ +F+IGF++ +PFL+IDM+VA+ +M+MGM MLPP ++LPFK++ FV++DGW Sbjct: 187 FVISELKTAFQIGFILFVPFLVIDMVVASTLMSMGMFMLPPVMVALPFKLLLFVMVDGWY 246 Query: 236 LLVENLVKSF 245 L+V++LV+SF Sbjct: 247 LVVKSLVESF 256 >gi|84502361|ref|ZP_01000497.1| flagellar biosynthesis protein [Oceanicola batsensis HTCC2597] gi|84389173|gb|EAQ01970.1| flagellar biosynthesis protein [Oceanicola batsensis HTCC2597] Length = 277 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 117/219 (53%), Positives = 162/219 (73%), Gaps = 5/219 (2%) Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92 +++ +++ T+LSIAP LL+++T F RF+IVFS+LR+ +G+ PPN+V+ S+AL Sbjct: 53 ATLAGRLIQLVAAMTVLSIAPGLLVIMTSFTRFVIVFSMLRSALGLNQTPPNMVLSSMAL 112 Query: 93 FMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152 FMTF+VM P + + EMGI PL+NN ITE A++R AEPF FM NTREKDL+LF D+A Sbjct: 113 FMTFFVMQPVFEDAWEMGIDPLINNVITEEQALERTAEPFRTFMLANTREKDLALFQDIA 172 Query: 153 HSSHRNT-----DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 S T + ++ +R L+P+FMISELRR+F IGFLI LPF+ ID+I+A+I+M Sbjct: 173 ARSAGQTGADNLQVDEDGLPSWRSLVPAFMISELRRAFSIGFLIYLPFVAIDLIIASILM 232 Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 + GMMMLPP ISLPFKVIFFVLIDGW +L +L++S++ Sbjct: 233 SAGMMMLPPVLISLPFKVIFFVLIDGWYMLAGSLMESYL 271 >gi|83647846|ref|YP_436281.1| flagellar biosynthesis protein FliP [Hahella chejuensis KCTC 2396] gi|83635889|gb|ABC31856.1| flagellar biosynthetic protein FliP [Hahella chejuensis KCTC 2396] Length = 253 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 99/248 (39%), Positives = 157/248 (63%), Gaps = 7/248 (2%) Query: 2 IRYCFFALFLVTPELVFAKSSLH----DVMNIPADLSISTWIVRTFGIFTILSIAPILLI 57 +R + LFL+ P + ++ ++ P + ++ + T L+ P L+ Sbjct: 7 LRLTYLILFLMLPGVAWSAQDAILPAVKLVTNPDGTQEYSVTLQILALMTALTFIPAFLM 66 Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 M+T F R IIVFSILR +G+ P N +++ +ALF+TF++M PT ++ E+ +QP + Sbjct: 67 MMTSFTRIIIVFSILRQALGLQQAPSNQILVGIALFLTFFIMGPTFKQANEVALQPYLAE 126 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177 Q+T A+ + +EPF FM TRE DL LF+ +A ++ + + + + IL+P+F+ Sbjct: 127 QLTAQEAVAKASEPFREFMLRQTRESDLGLFIRLAGDENKYAN---PEEVPFTILMPAFV 183 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 SEL+ +F+IGFLI +PFLIIDM+VA+++MAMGMMML P ISLPFK++ FVL+DGW+L+ Sbjct: 184 TSELKTAFQIGFLIFIPFLIIDMVVASVLMAMGMMMLSPIIISLPFKIMLFVLVDGWALI 243 Query: 238 VENLVKSF 245 + L SF Sbjct: 244 MGTLAASF 251 >gi|238794007|ref|ZP_04637625.1| Flagellar biosynthetic protein fliP [Yersinia intermedia ATCC 29909] gi|238726639|gb|EEQ18175.1| Flagellar biosynthetic protein fliP [Yersinia intermedia ATCC 29909] Length = 273 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 95/227 (41%), Positives = 146/227 (64%), Gaps = 6/227 (2%) Query: 21 SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 + L +++ P +W V+T T LS P L+M+T F R IIV +LR +G Sbjct: 49 AQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLLRNALGT 108 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 S PPN V++ LALF+TF++MSP D+ + P ++I+ AI + A+P FM Sbjct: 109 PSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAIDKGAQPLREFMLR 168 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 TRE DL+L+ +A+ + + + RIL+P+++ SEL+ +F+IGF + +PFLII Sbjct: 169 QTRESDLALYARLANLP----PLEGPEVVPMRILLPAYVTSELKTAFQIGFTVFIPFLII 224 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 D++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 225 DLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 271 >gi|332284032|ref|YP_004415943.1| flagellar biosynthesis protein FliP [Pusillimonas sp. T7-7] gi|330427985|gb|AEC19319.1| flagellar biosynthesis protein FliP [Pusillimonas sp. T7-7] Length = 257 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 100/235 (42%), Positives = 153/235 (65%), Gaps = 6/235 (2%) Query: 13 TPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70 P + A+++L + + TW ++T + T++S P +L+M+T F R IIV Sbjct: 25 WPAMGLAQTTLPALTSAVNPDGSQTWSLSIQTLVLLTMMSFLPAMLMMMTGFTRIIIVLG 84 Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130 +LR MG G+ PPN ++I LALF+TF+ MSP D+ QPL N I A++R + Sbjct: 85 LLRNAMGTGASPPNSILIGLALFLTFFAMSPVFDQIYADAYQPLSNGVIAFEEALERGIK 144 Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190 P FM + TRE DL++F +MA+ ++ + + R+L+P+FM SEL+ +F+IGF Sbjct: 145 PLHSFMLHQTREADLTMFANMANV----AELQTAEEVPLRVLVPAFMASELKTAFQIGFT 200 Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 I +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL DGW LL+ +L +SF Sbjct: 201 IFIPFLIIDLVVASVLMALGMMMVPPVTISLPFKLMLFVLADGWHLLLGSLARSF 255 >gi|148380606|ref|YP_001255147.1| flagellar biosynthetic protein FliP [Clostridium botulinum A str. ATCC 3502] gi|153933100|ref|YP_001384893.1| flagellar biosynthesis protein FliP [Clostridium botulinum A str. ATCC 19397] gi|153936309|ref|YP_001388362.1| flagellar biosynthesis protein FliP [Clostridium botulinum A str. Hall] gi|168180927|ref|ZP_02615591.1| flagellar biosynthetic protein FliP [Clostridium botulinum NCTC 2916] gi|168182731|ref|ZP_02617395.1| flagellar biosynthetic protein FliP [Clostridium botulinum Bf] gi|226950061|ref|YP_002805152.1| flagellar biosynthetic protein FliP [Clostridium botulinum A2 str. Kyoto] gi|237796088|ref|YP_002863640.1| flagellar biosynthetic protein FliP [Clostridium botulinum Ba4 str. 657] gi|148290090|emb|CAL84209.1| putative flagellar biosynthetic protein [Clostridium botulinum A str. ATCC 3502] gi|152929144|gb|ABS34644.1| flagellar biosynthetic protein FliP [Clostridium botulinum A str. ATCC 19397] gi|152932223|gb|ABS37722.1| flagellar biosynthetic protein FliP [Clostridium botulinum A str. Hall] gi|182668360|gb|EDT80339.1| flagellar biosynthetic protein FliP [Clostridium botulinum NCTC 2916] gi|182674137|gb|EDT86098.1| flagellar biosynthetic protein FliP [Clostridium botulinum Bf] gi|226841463|gb|ACO84129.1| flagellar biosynthetic protein FliP [Clostridium botulinum A2 str. Kyoto] gi|229260888|gb|ACQ51921.1| flagellar biosynthetic protein FliP [Clostridium botulinum Ba4 str. 657] Length = 258 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 95/234 (40%), Positives = 149/234 (63%), Gaps = 4/234 (1%) Query: 12 VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71 P+ ++ ++ + + ++ + T+L++ P ++M+T F R I+VF Sbjct: 28 AAPQNTMPIPKINISVDNANNPTEYVDNIKLLIMLTVLTLLPSFIVMMTSFVRTIVVFGF 87 Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131 LR MG PPN V+I LALF+T ++M P IQP M N+IT+ A++ A+P Sbjct: 88 LRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEINTKAIQPYMKNKITQEQAVEIGAKP 147 Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191 FM TR+KDL LF+++A + + T D+ I++P+F+ISEL+ +F+IGFL+ Sbjct: 148 LRQFMLKQTRQKDLKLFVELAKPNFKVT----KDNAPLYIVVPAFIISELKTAFQIGFLL 203 Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PFLIID++VA+++M+MGM MLPP ISLPFK++ FV++DGW LLV++LV SF Sbjct: 204 FIPFLIIDLVVASVLMSMGMFMLPPVMISLPFKLLLFVMVDGWYLLVKSLVMSF 257 >gi|254258156|ref|ZP_04949210.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 1710a] gi|254298637|ref|ZP_04966088.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 406e] gi|76580117|gb|ABA49592.1| flagellar biosynthetic protein [Burkholderia pseudomallei 1710b] gi|157808588|gb|EDO85758.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 406e] gi|254216845|gb|EET06229.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 1710a] Length = 276 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 97/241 (40%), Positives = 146/241 (60%), Gaps = 6/241 (2%) Query: 7 FALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPR 64 + L + L + P +T+ V+T + T+LS P +L+M+T F R Sbjct: 39 ILIGLAPALACAQAAGLPAFNSAPGSNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTR 98 Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124 IIV S+LR +G S PPN V++ LALF+T +VMSP LDR+ +P + A Sbjct: 99 IIIVLSLLRQAIGTASTPPNQVLVGLALFLTLFVMSPVLDRAYNDAYKPFSEGTLQMDQA 158 Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184 +QR PF FM TRE DL+LF ++ + + + + +L+P+F+ SEL+ Sbjct: 159 VQRGTAPFKAFMLKQTRETDLALFAKIS----KAAPMQGPEDVPLSLLVPAFVTSELKTG 214 Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 F+IGF I +PFLIIDM+VA+++M+MGMMM+ P ++SLPFK++ FVL+DGW LL+ +L +S Sbjct: 215 FQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATVSLPFKLMLFVLVDGWQLLIGSLAQS 274 Query: 245 F 245 F Sbjct: 275 F 275 >gi|325525522|gb|EGD03321.1| flagellar biosynthesis protein FliP [Burkholderia sp. TJI49] Length = 229 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 96/232 (41%), Positives = 149/232 (64%), Gaps = 7/232 (3%) Query: 17 VFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73 A+++ N P + + V+T + T+LS P +++M+T F R IIV S+LR Sbjct: 1 ACAQAAGLPAFNASPGPNGGTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTRIIIVLSLLR 60 Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133 +G + PPN V++ LALF+TF+VMSP LDR+ G +P + + A+QR PF Sbjct: 61 QALGTATTPPNQVLVGLALFLTFFVMSPVLDRAYTDGYKPFSDGSVPMEQAVQRGLAPFK 120 Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193 FM TRE DL+LF ++ + + + + +L+P+F+ SEL+ F+IGF I + Sbjct: 121 GFMLKQTRETDLALFAKIS----KAAPMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFI 176 Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 PFLIIDM+VA+++M+MGMMM+ P+++SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 177 PFLIIDMVVASVLMSMGMMMVSPSTVSLPFKLMLFVLVDGWQLLIGSLAQSF 228 >gi|146312185|ref|YP_001177259.1| flagellar biosynthesis protein FliP [Enterobacter sp. 638] gi|145319061|gb|ABP61208.1| flagellar biosynthetic protein FliP [Enterobacter sp. 638] Length = 245 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 99/247 (40%), Positives = 156/247 (63%), Gaps = 9/247 (3%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 ++ L L P + + L +++ P +W V+T T L+ P +L+M Sbjct: 4 LLSLTLAGLVLFAPAV---YAQLPGLISTPMAGGGQSWSLPVQTLVFITSLTFIPAILLM 60 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP ++ Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYADAYQPFSEDK 120 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ A+++ A+P FM TRE DL+LF +A+ I + + RIL+P+++ Sbjct: 121 ISMQVALEKGAQPLREFMLRQTREADLALFARLANEG----PIQGPEAVPMRILLPAYVT 176 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKIMLFVLVDGWQLLV 236 Query: 239 ENLVKSF 245 +L +SF Sbjct: 237 GSLAQSF 243 >gi|300994267|ref|ZP_07180819.1| flagellar biosynthetic protein FliP [Escherichia coli MS 200-1] gi|300304932|gb|EFJ59452.1| flagellar biosynthetic protein FliP [Escherichia coli MS 200-1] Length = 245 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 99/239 (41%), Positives = 153/239 (64%), Gaps = 5/239 (2%) Query: 7 FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66 L+L+TP L FA+ +P + V+T T L+ +L+M+T F R I Sbjct: 10 VLLWLITP-LAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIQAILLMMTSFTRII 68 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A++ Sbjct: 69 IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 + A+P FM TRE DL LF +A++ + + + RIL+P+++ SEL+ +F+ Sbjct: 129 KGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQ 184 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243 >gi|296103629|ref|YP_003613775.1| Flagellar biosynthetic protein FliP [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058088|gb|ADF62826.1| Flagellar biosynthetic protein FliP [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 243 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 95/226 (42%), Positives = 146/226 (64%), Gaps = 4/226 (1%) Query: 20 KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79 ++ + P+ T V+T + + + P +L+M+T F R IIV ++R +G Sbjct: 20 AANGDITLGQPSGEGGWTLPVQTLLLLSGFTFIPAILLMMTGFTRIIIVLGLMRNALGTP 79 Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139 + PPN V++ L+LF+TF+VMSP + E QPL N+IT A+ +P FM + Sbjct: 80 TAPPNQVLVGLSLFLTFFVMSPVFSQIYEKAWQPLQENKITMEVALTEGVKPLRAFMLDQ 139 Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199 TRE DL++F +A + DI + + IL+P+F+ SEL+ +F+IGF I +PFLIID Sbjct: 140 TRESDLAMFARIAKTP----DIASPEEVPLSILVPAFITSELKTAFQIGFTIFIPFLIID 195 Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++VA+I+MA+GMMM+PPT+I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 196 LVVASILMALGMMMVPPTTIALPFKLMLFVLVDGWQLLVGSLAQSF 241 >gi|39995531|ref|NP_951482.1| flagellar biosynthesis protein FliP [Geobacter sulfurreducens PCA] gi|39982294|gb|AAR33755.1| flagellar biosynthetic protein FliP [Geobacter sulfurreducens PCA] gi|298504532|gb|ADI83255.1| flagellar biogenesis protein FliP [Geobacter sulfurreducens KN400] Length = 255 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 101/212 (47%), Positives = 145/212 (68%), Gaps = 4/212 (1%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 + +++ F + T+LS+AP LL+M T F R +V S LR +G PPN +II+L+LF Sbjct: 47 GDVSVVLQIFFLMTVLSLAPGLLMMTTSFTRIAVVLSFLRHAIGTQQAPPNQIIIALSLF 106 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 +TF+VM+P + IQP QIT+ A++R P FM + TREKDL+LF++++ Sbjct: 107 LTFFVMAPVWQQVNTQAIQPYRAAQITQDEALKRAVAPMRKFMLSQTREKDLALFLNLSK 166 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 T D I LIP+FMISELR +F+IGFLI +PFL++DM+VA+++M+MGMMM Sbjct: 167 LPRPRT----ADDIPTLTLIPAFMISELRTAFQIGFLIFIPFLVVDMVVASVLMSMGMMM 222 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LPP ISLPFK++ FVL+DGW L++ +L+KSF Sbjct: 223 LPPVMISLPFKILLFVLVDGWGLVIGSLIKSF 254 >gi|298530624|ref|ZP_07018026.1| flagellar biosynthetic protein FliP [Desulfonatronospira thiodismutans ASO3-1] gi|298509998|gb|EFI33902.1| flagellar biosynthetic protein FliP [Desulfonatronospira thiodismutans ASO3-1] Length = 236 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 95/240 (39%), Positives = 149/240 (62%), Gaps = 9/240 (3%) Query: 12 VTPELVFAKSSLHDVMNIPADLSIS-----TWIVRTFGIFTILSIAPILLIMVTCFPRFI 66 + P L A+ + +++ + + + TILS+AP +++ +TCF R I Sbjct: 1 MWPVLAQAQDPVLPSLSLQLSGEEAQPDNIAVALEILFLLTILSVAPAIVLTITCFTRII 60 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IVFS +R +G +PPN V+ +LA+F+T +M+P + +QP +N +I A+ Sbjct: 61 IVFSFIRHAIGTQQMPPNQVLAALAIFLTVAIMAPIGSEINQTALQPYLNEEIGHEEALS 120 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 R P FM +TRE+DLS+F + + + +LIP+FMISEL+ +F+ Sbjct: 121 RAEGPMREFMFKHTRERDLSVFYSITGMERPE----SREDVPTMLLIPAFMISELKTAFQ 176 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 IGFLI +PFLI+DM+VA+I+++MGMMMLPP IS+PFKV+ F+++DGW+LLV +LV SF+ Sbjct: 177 IGFLIYIPFLILDMVVASILLSMGMMMLPPVMISMPFKVLLFIMVDGWNLLVGSLVNSFV 236 >gi|292487982|ref|YP_003530859.1| flagellar biosynthetic protein FliP [Erwinia amylovora CFBP1430] gi|292899202|ref|YP_003538571.1| flagellar biosynthetic protein [Erwinia amylovora ATCC 49946] gi|291199050|emb|CBJ46161.1| flagellar biosynthetic protein [Erwinia amylovora ATCC 49946] gi|291553406|emb|CBA20451.1| Flagellar biosynthetic protein FliP precursor [Erwinia amylovora CFBP1430] Length = 245 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 99/247 (40%), Positives = 157/247 (63%), Gaps = 9/247 (3%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 +I ALF++ P + + L +++ P +W V+T T L+ P +L++ Sbjct: 4 LIPLLLPALFMLAPNV---YAQLPGLISQPTANGGQSWSLPVQTLVFITSLTFLPAILLL 60 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIVF +LR +G S PPN V++ L+LF+TF++M P D+ QP ++ Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLSLFLTFFIMGPVFDKIYTDAYQPFSEDK 120 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ AI + A+P FM TRE DL+LF +A++ I + + RIL+P+++ Sbjct: 121 ISMQEAIDKGAQPLREFMLRQTREADLALFARLANTP----PIAGPEAVPMRILLPAYVT 176 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV Sbjct: 177 SELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236 Query: 239 ENLVKSF 245 +L +SF Sbjct: 237 SSLAQSF 243 >gi|56460298|ref|YP_155579.1| flagellar biosynthesis protein FliP [Idiomarina loihiensis L2TR] gi|56179308|gb|AAV82030.1| Flagellar biosynthesis protein FliP [Idiomarina loihiensis L2TR] Length = 248 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 148/246 (60%), Gaps = 6/246 (2%) Query: 2 IRYCFFALFLVTPELVFAKSSLHDVM--NIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 + C A+ + PE FA L V P + ++ I T L+ P ++IM+ Sbjct: 5 LLLCILAVLCLLPEQAFAWQDLTAVTVKTNPDGSEEYSVTLQILAIMTALTFIPAMVIMM 64 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R IIV +ILR +G+ P N V++ +ALF++F++M+P L+ + +QP +N +I Sbjct: 65 TSFTRIIIVLAILRQAIGLQQSPSNQVLLGIALFLSFFIMTPVLNEINDKALQPYLNEEI 124 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 A+ R P FM TR DL F++++ + + + + + +LIPSF+ S Sbjct: 125 QSMEAVDRAKAPIKAFMLAQTRLTDLETFVEISGTEG----VQEPEDVPMSVLIPSFITS 180 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P +SLPFK++ FVL+DGWSL + Sbjct: 181 ELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWSLTMS 240 Query: 240 NLVKSF 245 L SF Sbjct: 241 TLAGSF 246 >gi|332524236|ref|ZP_08400462.1| flagellar biosynthesis protein FliP [Rubrivivax benzoatilyticus JA2] gi|332107571|gb|EGJ08795.1| flagellar biosynthesis protein FliP [Rubrivivax benzoatilyticus JA2] Length = 252 Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 96/226 (42%), Positives = 145/226 (64%), Gaps = 4/226 (1%) Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80 L ++ A + + ++T FT LS P LL+++T F R +IV S+LR +G + Sbjct: 30 GGLPLLVGQGAGGTSYSVPIQTLLFFTALSFIPALLLLMTGFTRIVIVLSLLRQALGTQA 89 Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140 PPN VII ++LF+TF+VMSPT DR + +P NQI A++R P FM T Sbjct: 90 APPNQVIIGMSLFLTFFVMSPTFDRVYDQAYKPFAENQIAFDEALKRGEVPMREFMLKQT 149 Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200 R+ D+ LF +A K++ + R+L+P+F+ SEL+ +F+IGF+I +PFLIIDM Sbjct: 150 RQSDVQLFAKLAKLPAE----VKSEDVPLRVLVPAFVTSELKSAFQIGFMIFIPFLIIDM 205 Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 IVA+++M++GMMML P ++LPFK++ FVL DGW+LL+ +L SF+ Sbjct: 206 IVASVLMSLGMMMLSPVLVALPFKLMLFVLADGWNLLLGSLAASFV 251 >gi|153953789|ref|YP_001394554.1| flagellar biosynthesis protein FliP [Clostridium kluyveri DSM 555] gi|219854405|ref|YP_002471527.1| hypothetical protein CKR_1062 [Clostridium kluyveri NBRC 12016] gi|146346670|gb|EDK33206.1| FliP [Clostridium kluyveri DSM 555] gi|219568129|dbj|BAH06113.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 258 Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 88/193 (45%), Positives = 133/193 (68%), Gaps = 4/193 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +++M+T F R ++VF LRT MG PPN V++ LALF+T ++M P + IQ Sbjct: 69 PSIIMMMTSFVRIVVVFGFLRTAMGTQQSPPNQVLVGLALFLTVFIMLPVYGKINSEAIQ 128 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P + N IT+ A++R A+P FM TR+KDL LF+D A ++ T D+ ++ Sbjct: 129 PYLQNGITQEQAVERGAKPLREFMLKQTRQKDLKLFVDEAKLNYEVT----KDNAPLYVV 184 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 IP+++ISEL+ +F+IGFL+ +PF+IID++V +++M+MGM MLPP ISLPFK++ FV+ D Sbjct: 185 IPAYIISELKTAFQIGFLLYIPFMIIDLVVGSVLMSMGMFMLPPVMISLPFKLLLFVMTD 244 Query: 233 GWSLLVENLVKSF 245 GW LLV++L+ SF Sbjct: 245 GWYLLVKSLIISF 257 >gi|311105950|ref|YP_003978803.1| flagellar biosynthetic protein FliP [Achromobacter xylosoxidans A8] gi|310760639|gb|ADP16088.1| flagellar biosynthetic protein FliP [Achromobacter xylosoxidans A8] Length = 263 Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 101/235 (42%), Positives = 147/235 (62%), Gaps = 6/235 (2%) Query: 13 TPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFS 70 P V A+++L + P T+ + +T + T LS P L+M+T F R IIV Sbjct: 31 FPAGVVAQATLPALTATPGPNGSETYSLSMQTLLLMTSLSFLPAALLMMTGFTRIIIVLG 90 Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130 +LR+ MG PPN V+I LALF+TFY MSP D+ +PL I A++R A Sbjct: 91 LLRSAMGTAMSPPNHVLIGLALFLTFYTMSPVFDKIYTDAYKPLSEGSIQFEAAVERAAG 150 Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190 P FM + TRE DLSLF ++A + + RIL+P+F+ SEL+ +F+IGF Sbjct: 151 PLRTFMLHQTRENDLSLFANLAKQP----ALEDPSQVPLRILVPAFITSELKTAFQIGFT 206 Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 I +PFLIID++VA+++MA+GMMM+PP +++LPFK++ FVL DGW+LL+ +L +SF Sbjct: 207 IFIPFLIIDLVVASVLMALGMMMVPPVTVALPFKLMLFVLADGWNLLMGSLAQSF 261 >gi|95929864|ref|ZP_01312605.1| flagellar biosynthetic protein FliP [Desulfuromonas acetoxidans DSM 684] gi|95134160|gb|EAT15818.1| flagellar biosynthetic protein FliP [Desulfuromonas acetoxidans DSM 684] Length = 246 Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 102/247 (41%), Positives = 157/247 (63%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSIS--TWIVRTFGIFTILSIAPILLIM 58 M+R F ++ P +A + + + + + V+ + TILS+AP +L+M Sbjct: 3 MLRLLFALGLILLPATGWAIDLPTITLGVENAATPNEVSMAVQILLVLTILSVAPAILLM 62 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 T F R ++V S +R MG +PPN VI+ L+LF+TF++M+P E +QP ++ + Sbjct: 63 TTAFVRVVVVLSFIRQAMGTQQMPPNQVIVGLSLFLTFFIMAPVYSVVNERAVQPYLSGE 122 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I + A+ P FM + TREKDL+L +D+A + +T D + LIP+FM+ Sbjct: 123 IDQAQALTEAVNPVRDFMYSQTREKDLALLVDIAGNDRPDT----IDDVPTTTLIPAFML 178 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL R+F+IGF++ +PFL+IDM+VA+++M+MGMMMLPP ISLPFK++ FVL+DGW L+V Sbjct: 179 SELNRAFQIGFMVYVPFLVIDMVVASVLMSMGMMMLPPPIISLPFKLLLFVLVDGWGLVV 238 Query: 239 ENLVKSF 245 +LVKSF Sbjct: 239 GSLVKSF 245 >gi|78224289|ref|YP_386036.1| flagellar biosynthesis protein FliP [Geobacter metallireducens GS-15] gi|78195544|gb|ABB33311.1| Flagellar transport protein FliP [Geobacter metallireducens GS-15] Length = 250 Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 103/224 (45%), Positives = 148/224 (66%), Gaps = 4/224 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 +L + + + +++ F + T+LS+AP L++M T F R +IV S LR +G Sbjct: 30 TLSIGVGKASKPGDVSTVLQIFFLMTVLSLAPGLMMMTTSFTRIVIVLSFLRNAIGTQQS 89 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PPN +I++L+LF+TF+VMSP + IQP QIT+ A +R P FM + TR Sbjct: 90 PPNQIIVALSLFLTFFVMSPVWQQVNTQAIQPYRAAQITQEEAFRRAQVPVRKFMFSQTR 149 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 EKDL+LF++++ D I LIP+FMISELR +F+IGFLI +PFL+IDM+ Sbjct: 150 EKDLALFINLSKLQRPR----NADDIPTLTLIPAFMISELRTAFQIGFLIFIPFLVIDMV 205 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 VA+++M+MGMMMLPP ISLPFK++ FVL+DGW L++ +LVKSF Sbjct: 206 VASVLMSMGMMMLPPVMISLPFKILLFVLVDGWGLVIGSLVKSF 249 >gi|161523220|ref|YP_001578232.1| flagellar biosynthesis protein FliP [Burkholderia multivorans ATCC 17616] gi|189348923|ref|YP_001944551.1| flagellar biosynthesis protein FliP [Burkholderia multivorans ATCC 17616] gi|160340649|gb|ABX13735.1| flagellar biosynthetic protein FliP [Burkholderia multivorans ATCC 17616] gi|189332945|dbj|BAG42015.1| flagellar biosynthetic protein [Burkholderia multivorans ATCC 17616] Length = 253 Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 94/216 (43%), Positives = 144/216 (66%), Gaps = 4/216 (1%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P + + V+T + T+LS P +++M+T F R IIV S+LR +G + PPN V++ Sbjct: 41 PNGGTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTRIIIVLSLLRQALGTATTPPNQVLVG 100 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 LALF+TF+VMSP LDR+ G +P + + A+QR PF FM TRE DL+LF Sbjct: 101 LALFLTFFVMSPVLDRAYTDGYKPFSDGTLPMEQAVQRGVAPFKGFMLKQTRETDLALFA 160 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 ++ + + + + +L+P+F+ SEL+ F+IGF I +PFLIIDM+VA+++M+M Sbjct: 161 KIS----KAAPMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSM 216 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMM+ P+++SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 217 GMMMVSPSTVSLPFKLMLFVLVDGWQLLIGSLAQSF 252 >gi|296133033|ref|YP_003640280.1| flagellar biosynthetic protein FliP [Thermincola sp. JR] gi|296031611|gb|ADG82379.1| flagellar biosynthetic protein FliP [Thermincola potens JR] Length = 262 Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 93/234 (39%), Positives = 152/234 (64%), Gaps = 4/234 (1%) Query: 12 VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71 V ++ +N ++ + ++ + TILS+AP +LIM T F R ++V S Sbjct: 32 VFAAPAVPVPNVDININTSSNPQEVSKSLQILFLITILSLAPAILIMTTAFTRVVVVLSF 91 Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131 +R+ + + PPN VII LALF+TF++M+PT + + +QP ++ ++++ A+++ P Sbjct: 92 VRSALSTHTTPPNQVIIGLALFLTFFIMAPTWSQVNKDALQPYLSGKLSQEQALKKAVTP 151 Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191 FM TREKDL+LF+ MA+ T + +LIP+F ISEL+ +F+IGF+I Sbjct: 152 VRDFMFKQTREKDLALFVKMANIKRPRTHA----DVPTYVLIPAFTISELKTAFQIGFMI 207 Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PF++IDM++A+ +M+MGM+MLPP ISLPFK++ FVL+DGW+L+V +L+ SF Sbjct: 208 YIPFIVIDMVIASSLMSMGMIMLPPMMISLPFKLLLFVLVDGWNLIVRSLIMSF 261 >gi|221201779|ref|ZP_03574816.1| flagellar biosynthetic protein FliP [Burkholderia multivorans CGD2M] gi|221207716|ref|ZP_03580724.1| flagellar biosynthetic protein FliP [Burkholderia multivorans CGD2] gi|221172562|gb|EEE05001.1| flagellar biosynthetic protein FliP [Burkholderia multivorans CGD2] gi|221178199|gb|EEE10609.1| flagellar biosynthetic protein FliP [Burkholderia multivorans CGD2M] Length = 253 Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 94/216 (43%), Positives = 144/216 (66%), Gaps = 4/216 (1%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P + + V+T + T+LS P +++M+T F R IIV S+LR +G + PPN V++ Sbjct: 41 PNGGTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTRIIIVLSLLRQALGTATTPPNQVLVG 100 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 LALF+TF+VMSP LDR+ G +P + + A+QR PF FM TRE DL+LF Sbjct: 101 LALFLTFFVMSPVLDRAYTDGYKPFSDGTLPMEQAVQRGVAPFKGFMLKQTRETDLALFA 160 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 ++ + + + + +L+P+F+ SEL+ F+IGF I +PFLIIDM+VA+++M+M Sbjct: 161 KIS----KAAPMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSM 216 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMM+ P+++SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 217 GMMMVSPSTVSLPFKLMLFVLVDGWQLLIGSLAQSF 252 >gi|259907616|ref|YP_002647972.1| Flagellar biosynthetic protein FliP [Erwinia pyrifoliae Ep1/96] gi|224963238|emb|CAX54722.1| Flagellar biosynthetic protein FliP [Erwinia pyrifoliae Ep1/96] gi|283477458|emb|CAY73374.1| Flagellar biosynthetic protein FliP precursor [Erwinia pyrifoliae DSM 12163] Length = 247 Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 95/245 (38%), Positives = 154/245 (62%), Gaps = 5/245 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 ++R +++ A +S + P T V+T + + L+ P +L+M+T Sbjct: 6 LLRALLLVAGMLSAVGALAANS-DITLASPQGNGGWTLPVQTLVLLSSLTFLPAVLLMMT 64 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R IIV ++R +G + PPN V++ LALF+TFYVMSP ++ + QPL ++IT Sbjct: 65 GFTRIIIVLGLMRNALGTPTAPPNQVLVGLALFLTFYVMSPVFNQIYQQAWQPLQEDKIT 124 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A+++ +P FM + TRE DL++F +A + + + + IL+P+F+ SE Sbjct: 125 MEVALEQGVKPLRAFMLDQTRENDLAMFAQIA----KAGEFKGPEEVPLGILVPAFVTSE 180 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +F+IGF I +PFLIID++VA+I+MA+GMMM+PP +I+LPFK++ FVL+DGW LL+ + Sbjct: 181 LKTAFQIGFTIFIPFLIIDLVVASILMALGMMMVPPATIALPFKLMLFVLVDGWQLLMGS 240 Query: 241 LVKSF 245 L +SF Sbjct: 241 LAQSF 245 >gi|258514015|ref|YP_003190237.1| flagellar biosynthesis protein FliP [Desulfotomaculum acetoxidans DSM 771] gi|257777720|gb|ACV61614.1| flagellar biosynthetic protein FliP [Desulfotomaculum acetoxidans DSM 771] Length = 256 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 96/239 (40%), Positives = 149/239 (62%), Gaps = 8/239 (3%) Query: 11 LVTPELVFAKSSLHDVMNI----PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66 ++ P L +A+ +N+ + + ++ + TILS+ P +L+M+T F R + Sbjct: 21 VLLPRLAWAEPIPIPNINLNVGQSENPAQVVDSIKLLVLLTILSLIPAILLMMTSFTRIV 80 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IV S LR +G PPN V+I LALF+T ++M P + E ++P + NQIT+ A Sbjct: 81 IVLSFLRNALGTQQTPPNQVLIGLALFLTVFIMKPVYNDLNEQALKPYLANQITQEEAQN 140 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 R A P FM TRE DL+LF+ +A + + + ++IP+F+ISEL+ SF+ Sbjct: 141 RAAGPLKEFMLKQTRESDLALFIGVAKAQKP----QNRNDVPLHLVIPAFIISELKTSFQ 196 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +GFLI +PFL+ID +VA+ +M+MGM MLPP SLPFK++ FV++DGW L+V++LV+SF Sbjct: 197 MGFLIYIPFLVIDAVVASTLMSMGMFMLPPAMFSLPFKLLLFVMVDGWYLVVKSLVESF 255 >gi|238764402|ref|ZP_04625352.1| Flagellar biosynthetic protein fliP [Yersinia kristensenii ATCC 33638] gi|238697428|gb|EEP90195.1| Flagellar biosynthetic protein fliP [Yersinia kristensenii ATCC 33638] Length = 243 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 94/229 (41%), Positives = 147/229 (64%), Gaps = 6/229 (2%) Query: 19 AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 A + L +++ P +W V+T T LS P L+M+T F R IIV +LR + Sbjct: 17 ALAQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLLRNAL 76 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G S PPN V++ LALF+TF++MSP D+ + P ++I+ A+ + ++P FM Sbjct: 77 GTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAMDKGSQPLREFM 136 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 TRE DL+L+ +A+ + + + RIL+P+++ SEL+ +F+IGF + +PFL Sbjct: 137 LRQTRESDLALYARLANLP----PLEGPEVVPMRILLPAYVTSELKTAFQIGFTVFIPFL 192 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IID++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 193 IIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 241 >gi|326791526|ref|YP_004309347.1| flagellar biosynthetic protein FliP [Clostridium lentocellum DSM 5427] gi|326542290|gb|ADZ84149.1| flagellar biosynthetic protein FliP [Clostridium lentocellum DSM 5427] Length = 261 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 99/245 (40%), Positives = 152/245 (62%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 +I + L+ T ++ + + ++ ++ I TI+S+AP +LIM+T Sbjct: 16 IILFYVGCLYTDTQASTVQVPNITVNLGGESQAENTSASLQMIFIITIISLAPSILIMMT 75 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R II +R+ +G ++PPN +++ LALF+TF+VMSP + I PL QIT Sbjct: 76 SFLRIIIALHFVRSAIGTQTMPPNQILVGLALFLTFFVMSPVFMQIKTNAIDPLEKQQIT 135 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 + AI+R +P FM TR++D++LFMD+AH D + ++IP+F+ISE Sbjct: 136 QEQAIERGIQPLKEFMLKQTRDEDITLFMDLAHLEPYTEDTDLVKEMPLHVIIPAFIISE 195 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 LR F IGFL+ +PF+IIDM+VA +M+MGMMMLPP ISLPFKV+ F+L+DGW+L + Sbjct: 196 LRAGFIIGFLVYIPFIIIDMVVAATLMSMGMMMLPPAMISLPFKVLLFILVDGWNLFIGQ 255 Query: 241 LVKSF 245 L+++F Sbjct: 256 LIQTF 260 >gi|261340413|ref|ZP_05968271.1| flagellar biosynthetic protein FliP [Enterobacter cancerogenus ATCC 35316] gi|288317505|gb|EFC56443.1| flagellar biosynthetic protein FliP [Enterobacter cancerogenus ATCC 35316] Length = 245 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 98/247 (39%), Positives = 158/247 (63%), Gaps = 9/247 (3%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 ++ L L P + + L +++ P +W V+T T L+ P +L+M Sbjct: 4 LLSLTLAGLGLFAPAV---YAQLPGLISTPMAGGGQSWSLPVQTLVFITSLTFIPAILLM 60 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP ++ Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYTDAYQPFSEDK 120 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ A+++ A+P FM TRE DL+LF +A++ ++ + + RIL+P+++ Sbjct: 121 ISMEVALEKGAQPLREFMLRQTREADLALFARLANTG----ELQGPEAVPMRILLPAYVT 176 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKIMLFVLVDGWQLLV 236 Query: 239 ENLVKSF 245 +L +SF Sbjct: 237 SSLAQSF 243 >gi|120613021|ref|YP_972699.1| flagellar biosynthesis protein FliP [Acidovorax citrulli AAC00-1] gi|120591485|gb|ABM34925.1| flagellar biosynthetic protein FliP [Acidovorax citrulli AAC00-1] Length = 262 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 98/240 (40%), Positives = 144/240 (60%), Gaps = 4/240 (1%) Query: 7 FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66 AL SL ++ A + + ++T FT LS P +L+M+T F R + Sbjct: 26 MALVPSAWAQAAGGGSLPVLIGSGAGGTSYSVPIQTLLFFTALSFLPAVLLMMTGFTRIV 85 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IV S++R +G S PPN VII L+LF+TF+VM PT DR P NN IT A++ Sbjct: 86 IVLSLIRQAIGTQSAPPNQVIIGLSLFLTFFVMGPTFDRVYADAYLPYSNNTITFEQAVE 145 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 R P FM TR+ D +LF +A T + R+L+P+F+ SEL+ +F+ Sbjct: 146 RAEAPMRSFMLKQTRQSDFALFARLAKLPSGAT----AETAPMRVLVPAFVTSELKSAFQ 201 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 IGF+I +PFL+IDM+V++I+M++GMMML P ++LPFK++ FVL DGW+LL+ +L SF+ Sbjct: 202 IGFMIFIPFLVIDMVVSSILMSLGMMMLSPVLVALPFKLMLFVLADGWNLLLGSLAASFV 261 >gi|90021817|ref|YP_527644.1| flagellar biosynthesis protein FliP [Saccharophagus degradans 2-40] gi|89951417|gb|ABD81432.1| flagellar biosynthetic protein FliP [Saccharophagus degradans 2-40] Length = 280 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 92/220 (41%), Positives = 141/220 (64%), Gaps = 4/220 (1%) Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85 V P + ++ + T L+ P +LIM+T F R IIVFSILR +G+ P N Sbjct: 63 VTTQPDGSQEYSITLQILFLMTALTFLPAILIMMTAFTRIIIVFSILRQALGLQQSPSNQ 122 Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145 ++I L LF+TF++M+P +++ + +QP + QIT A++ +P FM NTRE DL Sbjct: 123 ILIGLTLFLTFFIMTPVIEKVNQNALQPYIAEQITAQQALEETKKPVRKFMLANTRESDL 182 Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205 LF +A + + I + +L+PSF+ SEL+ +F+IGF++ +PFL+ID++VA++ Sbjct: 183 ELFFRIASL----EPVATPEEIPFSVLVPSFITSELKTAFQIGFILFIPFLVIDIVVASV 238 Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MAMGMMML P ISLPFK++ FVL+DGW+L++ L SF Sbjct: 239 LMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLAASF 278 >gi|34498582|ref|NP_902797.1| flagellar biosynthesis protein FliP [Chromobacterium violaceum ATCC 12472] gi|34104436|gb|AAQ60794.1| probable flagellar biosynthetic protein fliP [Chromobacterium violaceum ATCC 12472] Length = 250 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 95/237 (40%), Positives = 151/237 (63%), Gaps = 6/237 (2%) Query: 11 LVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIV 68 L++P L A + L + + PA + + + T L+ P +++M+T F R +IV Sbjct: 15 LLSPLLADAAAGLPLMTSTPAAGGGQNYSLSLQMLLFMTALTFIPAMMLMMTAFTRIVIV 74 Query: 69 FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128 S+LR +G PPN VI+ LALF+T +VM PT D+ P +++I+ A+ Sbjct: 75 LSLLRQALGTTQSPPNQVIVGLALFLTLFVMGPTFDQVYAKAWVPFSDDKISFNQALDEG 134 Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188 ++P FM TREKDL+ F++++ S + + + LIP+F +SEL+ +F+IG Sbjct: 135 SKPMKAFMLRQTREKDLAFFIEISQSPKP----QSKEEVSMKTLIPAFAVSELKTAFQIG 190 Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 F+I +PF+IID++VA+I+MAMGMMM+ P +ISLPFK++ FVL+DGW+LL+ +LV+SF Sbjct: 191 FMIFIPFMIIDLVVASILMAMGMMMVSPVTISLPFKMMLFVLVDGWTLLMGSLVQSF 247 >gi|121601713|ref|YP_989394.1| flagellar biosynthesis protein FliP [Bartonella bacilliformis KC583] gi|120613890|gb|ABM44491.1| flagellar biosynthetic protein FliP [Bartonella bacilliformis KC583] Length = 247 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 133/250 (53%), Positives = 181/250 (72%), Gaps = 8/250 (3%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPA-----DLSISTWIVRTFGIFTILSIAPIL 55 M L L P+ ++ + + S+S WIV+ FG+ T+LS+AP L Sbjct: 1 MSSLIVLMLVLAIPDAFAQQTGAASPGGLAGLLPSVEGSVSGWIVQLFGLLTVLSVAPGL 60 Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115 L+MVT F RF I FS+LR+G+G+ + PPNLV+ISLALFMTFYVM+PT + + E G+QPLM Sbjct: 61 LMMVTSFTRFAIAFSLLRSGLGLQTTPPNLVMISLALFMTFYVMAPTFNAAWEQGVQPLM 120 Query: 116 NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPS 175 N+ITE AI ++++PF FM + REKDL LF+D++ + + I++RIL+P+ Sbjct: 121 KNEITEQQAIDKISQPFREFMISQVREKDLDLFVDLSD---PSFQVRTGADIDFRILVPA 177 Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235 FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW+ Sbjct: 178 FMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWN 237 Query: 236 LLVENLVKSF 245 LLV +L++SF Sbjct: 238 LLVGSLIRSF 247 >gi|114570490|ref|YP_757170.1| flagellar biosynthesis protein FliP [Maricaulis maris MCS10] gi|114340952|gb|ABI66232.1| flagellar biosynthetic protein FliP [Maricaulis maris MCS10] Length = 251 Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats. Identities = 110/243 (45%), Positives = 164/243 (67%), Gaps = 5/243 (2%) Query: 4 YCFFALFLVTPELV-FAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCF 62 +CF L L+ F + ++ + +++ +++ + T+LS+AP ++IM T F Sbjct: 9 FCFSLFLLGVITLIGFQADAQTVTIDAGQEGALTERVLQLMALLTVLSLAPSIIIMTTSF 68 Query: 63 PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122 R I+V S+LRTG+G+ PPN V++SLA+FMT ++M+P +S + GIQPL+N +I T Sbjct: 69 VRIIVVLSLLRTGLGLQQSPPNAVLVSLAIFMTGFIMAPVFTQSYDEGIQPLLNEEIELT 128 Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182 A P FM ++ RE DL+LF+DM+ + + + I+ P+FMISELR Sbjct: 129 EAFDLSTAPLKTFMLSHVREDDLALFIDMSQEAVPE----SPEATSFWIVAPAFMISELR 184 Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242 R+FEIGFL+ +PFLIID++VA+I+M+MGMMMLPP ISLPFK+IFFVL+DGW L+V +LV Sbjct: 185 RAFEIGFLLFIPFLIIDLVVASILMSMGMMMLPPIVISLPFKLIFFVLVDGWRLVVGSLV 244 Query: 243 KSF 245 +SF Sbjct: 245 QSF 247 >gi|328545499|ref|YP_004305608.1| flagellar transport protein FliP [polymorphum gilvum SL003B-26A1] gi|326415240|gb|ADZ72303.1| Flagellar transport protein FliP [Polymorphum gilvum SL003B-26A1] Length = 246 Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats. Identities = 127/215 (59%), Positives = 159/215 (73%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 + S S IV+ + T+LS+AP +LIMVT F RF + S LR+G+G+ + P NL++ISL Sbjct: 31 GEGSASGRIVQIIALLTVLSVAPGILIMVTSFTRFAVALSFLRSGIGLQTTPGNLILISL 90 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 ALFMTFYVM+PT DR+ G+ PLMNN+I E A R+ EPF FM + RE+DL LF D Sbjct: 91 ALFMTFYVMAPTFDRAWTQGVVPLMNNEIDEQEAYGRITEPFREFMLSQVREQDLVLFDD 150 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 +A +T +E R+LIP+FMISELRR FEIGFLI LPFL+IDMIVATI M+MG Sbjct: 151 LAAGRLTDTPAASPREVELRVLIPAFMISELRRGFEIGFLIALPFLVIDMIVATITMSMG 210 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMMLPPT ISLPFK +FF+LIDGW+LLV +LV+SF Sbjct: 211 MMMLPPTVISLPFKALFFILIDGWNLLVGSLVRSF 245 >gi|238796941|ref|ZP_04640445.1| Flagellar biosynthetic protein fliP [Yersinia mollaretii ATCC 43969] gi|238719201|gb|EEQ11013.1| Flagellar biosynthetic protein fliP [Yersinia mollaretii ATCC 43969] Length = 245 Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats. Identities = 100/242 (41%), Positives = 152/242 (62%), Gaps = 4/242 (1%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63 + + P ++ +M AD + V+T + T L+ P +L+M+T F Sbjct: 6 LTLLMIGFLLPVHSVWAANSDVMMARSADGENWSLPVQTLVLLTSLTFLPAILLMMTGFT 65 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 R IIV +LR +G S PPN V++ LALF+TFYVMSP ++ + QPL ++I+ T Sbjct: 66 RIIIVLGLLRNALGTPSTPPNQVLLGLALFLTFYVMSPVFNQIYKEAWQPLSEDKISMET 125 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 A++R +P FM TRE DL+L+ MA + + D + RIL+P+F+ SEL+ Sbjct: 126 ALERGVQPLRTFMLEQTRETDLALYTRMA----KEENFQSQDDVPLRILLPAFVTSELKT 181 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 F+IGF + +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L + Sbjct: 182 GFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLMGSLAQ 241 Query: 244 SF 245 SF Sbjct: 242 SF 243 >gi|295098284|emb|CBK87374.1| flagellar biosynthetic protein FliP [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 245 Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats. Identities = 99/247 (40%), Positives = 157/247 (63%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 M R F L + + L +++ P +W V+T T L+ P +L+M Sbjct: 1 MRRLLFLTLTGLGLFAPSVYAQLPGLVSTPLANGGQSWSLSVQTLVFITSLTFIPAILLM 60 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP ++ Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYTEAYQPFSEDK 120 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ A+++ A+P FM TRE DL+LF +A++ ++ + + RIL+P+++ Sbjct: 121 ISMQVALEKGAQPLREFMLRQTREADLALFARLANTG----ELQGPEAVPMRILLPAYVT 176 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKIMLFVLVDGWQLLV 236 Query: 239 ENLVKSF 245 +L +SF Sbjct: 237 SSLAQSF 243 >gi|319898643|ref|YP_004158736.1| flagellar biosynthetic protein fliP [Bartonella clarridgeiae 73] gi|319402607|emb|CBI76152.1| Flagellar biosynthetic protein fliP [Bartonella clarridgeiae 73] Length = 250 Score = 212 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 134/247 (54%), Positives = 185/247 (74%), Gaps = 9/247 (3%) Query: 5 CFFALFLVTPELVFAKSSLHDVMNI------PADLSISTWIVRTFGIFTILSIAPILLIM 58 + L+T FA+ + +N +SIS IV+ FG+ T+LS+AP LLIM Sbjct: 7 LVLMILLLTTTGAFAQRVGTENVNSLAGLFFSPGVSISGRIVQLFGLLTVLSVAPGLLIM 66 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 VT F RF I FS+LRTG+G+ + P NLV+ISLALFM+FYVM+PT + + E G+QPL+NN+ Sbjct: 67 VTSFTRFAIAFSLLRTGLGLQTTPSNLVMISLALFMSFYVMAPTFNTAWEQGVQPLVNNK 126 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+E AI+++++PF FM + REKDL LF+D++ SS + + +++R+LIP+FMI Sbjct: 127 ISEQQAIEKISQPFREFMISQVREKDLDLFVDLSDSSLQ---VKTGADVDFRVLIPAFMI 183 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW+LLV Sbjct: 184 SELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNLLV 243 Query: 239 ENLVKSF 245 +L++SF Sbjct: 244 GSLIRSF 250 >gi|86146126|ref|ZP_01064452.1| flagellar biosynthesis protein [Vibrio sp. MED222] gi|218708833|ref|YP_002416454.1| flagellar biosynthesis protein FliP [Vibrio splendidus LGP32] gi|85836073|gb|EAQ54205.1| flagellar biosynthesis protein [Vibrio sp. MED222] gi|218321852|emb|CAV17828.1| Flagellar biosynthetic protein fliP [Vibrio splendidus LGP32] Length = 309 Score = 212 bits (539), Expect = 4e-53, Method: Composition-based stats. Identities = 87/219 (39%), Positives = 136/219 (62%), Gaps = 5/219 (2%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 + ++ + T+L P ++I++T F R ++V SILR MG+ P N V Sbjct: 94 TTNANGGEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 153 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 II +A+F+TF++MSP + + E +QP +N QI+ A P FM TR KDL Sbjct: 154 IIGIAIFLTFFIMSPVISQVNEQAVQPYLNEQISARQAFDVAQGPIKSFMLKQTRIKDLE 213 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 F++++ +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++ Sbjct: 214 TFVEISG-----AQVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 268 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 269 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 307 >gi|85060034|ref|YP_455736.1| flagellar biosynthesis protein FliP [Sodalis glossinidius str. 'morsitans'] gi|84780554|dbj|BAE75331.1| flagellar biosynthesis protein FliP [Sodalis glossinidius str. 'morsitans'] Length = 253 Score = 212 bits (539), Expect = 5e-53, Method: Composition-based stats. Identities = 101/239 (42%), Positives = 150/239 (62%), Gaps = 4/239 (1%) Query: 7 FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66 AL L+ FA+ +P + V+T T L+ P L+M+T F R I Sbjct: 17 AALMLLFAPACFAQLPSIISQPLPGGSQNWSLPVQTLVFLTSLTFIPAALLMMTSFTRII 76 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IV +LR+ +G S PPN V++ LALF+TF+VMSP LD PL N+I+ TA++ Sbjct: 77 IVLGLLRSAIGTPSAPPNQVLLGLALFLTFFVMSPVLDSIYTEAYLPLSENKISMQTALE 136 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 R ++P FM TRE DL LF +A+ + + + RIL+P+++ SEL+ +F+ Sbjct: 137 RGSQPLRAFMLRQTREADLGLFARLANVP----PLEGPEAVPMRILLPAYVTSELKTAFQ 192 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGF + +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 193 IGFTLFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLSSLAQSF 251 >gi|253702494|ref|YP_003023683.1| flagellar biosynthesis protein FliP [Geobacter sp. M21] gi|251777344|gb|ACT19925.1| flagellar biosynthetic protein FliP [Geobacter sp. M21] Length = 247 Score = 212 bits (539), Expect = 5e-53, Method: Composition-based stats. Identities = 92/209 (44%), Positives = 144/209 (68%), Gaps = 4/209 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + +++ F + T++S+AP LL+M T F R ++V S LR+ +G P N ++I L+LF+TF Sbjct: 42 SVVLQIFFLMTVISLAPSLLMMTTSFTRIVVVLSFLRSALGTQQAPSNQIVIGLSLFLTF 101 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 ++M+P + +QP +QIT+ A++R P FM + REKDL+LF++++ Sbjct: 102 FIMAPVWQQVNANALQPYRASQITQEEAVKRGVAPLRKFMLSQVREKDLALFINLSKLPR 161 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 D I LIP++M+SEL+ +F+IGFLI +PFL++DM+VA+++M+MGMMMLPP Sbjct: 162 PK----NADDIPTLTLIPAYMVSELKTAFQIGFLIFIPFLVLDMVVASVLMSMGMMMLPP 217 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLPFK++ FVL+DGW L++ +LVKSF Sbjct: 218 VMISLPFKILLFVLVDGWGLVIGSLVKSF 246 >gi|220932509|ref|YP_002509417.1| flagellar biosynthetic protein FliP [Halothermothrix orenii H 168] gi|219993819|gb|ACL70422.1| flagellar biosynthetic protein FliP [Halothermothrix orenii H 168] Length = 254 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 101/218 (46%), Positives = 145/218 (66%), Gaps = 4/218 (1%) Query: 28 NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87 + PA+ +R + T+LS+AP LL+MVT F R I+V ++R + +PPN V+ Sbjct: 40 SNPAEGEDLVLSLRILLLLTVLSLAPALLVMVTSFTRVIVVLGLIRQALATRRMPPNQVL 99 Query: 88 ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147 I LALF+T ++M+P E +QP +NN+IT A R +P FM TREKDL+L Sbjct: 100 IGLALFLTVFIMAPVWQDINEQALQPYLNNEITTQQAYDRGIKPIRDFMFKQTREKDLAL 159 Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 F++M I +LIP+F+ISEL+ +F+IGFLI LPFL+IDM+VA+I+M Sbjct: 160 FVNMTGIERPENRA----DIPTYVLIPAFVISELKTAFQIGFLIYLPFLMIDMVVASILM 215 Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MGM+MLPP ISLPFK++ F+L+DGW L++E+LVK+F Sbjct: 216 SMGMLMLPPIIISLPFKLLLFILVDGWYLVIESLVKTF 253 >gi|284159406|ref|YP_440590.3| flagellar biosynthesis protein FliP [Burkholderia thailandensis E264] gi|83653869|gb|ABC37932.1| flagellar biosynthetic protein [Burkholderia thailandensis E264] Length = 276 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 93/216 (43%), Positives = 140/216 (64%), Gaps = 4/216 (1%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P + + V+T + T+LS P +L+M+T F R IIV S+LR +G S PPN V++ Sbjct: 64 PNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQAIGTASTPPNQVLVG 123 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 LALF+T +VMSP LD++ +P + A+QR PF FM TRE DL+LF Sbjct: 124 LALFLTLFVMSPVLDKAYTDAYKPFSEGTLQMDQAVQRGTAPFKTFMLKQTRETDLALFA 183 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 ++ + + + + +L+P+F+ SEL+ F+IGF I +PFLIIDM+VA+++M+M Sbjct: 184 KIS----KAAPMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSM 239 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMM+ P ++SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 240 GMMMVSPATVSLPFKLMLFVLVDGWQLLIGSLAQSF 275 >gi|188579766|ref|YP_001923211.1| flagellar biosynthetic protein FliP [Methylobacterium populi BJ001] gi|179343264|gb|ACB78676.1| flagellar biosynthetic protein FliP [Methylobacterium populi BJ001] Length = 253 Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats. Identities = 101/215 (46%), Positives = 152/215 (70%), Gaps = 4/215 (1%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 + ++ + T+L++AP +L+M T F R ++V SILR+ +G + PPN V++SL Sbjct: 41 GAGGTTERALQLVALITVLALAPSVLVMATSFTRIVVVLSILRSALGTQTAPPNTVMVSL 100 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 ALF+T +VM+PT + G++PL+ QI+++ A +R + PF FM N REKDL LF+D Sbjct: 101 ALFLTAFVMAPTAREAYRAGVEPLVAGQISQSQAFERASAPFKTFMLRNVREKDLKLFLD 160 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 MA + I I+ P+FMISELRR+FEIGFL+ +PFLIID++VA+++MAMG Sbjct: 161 MARQPAP----AGPEAIGLEIVTPAFMISELRRAFEIGFLLFIPFLIIDLVVASVLMAMG 216 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMMLPP +++LPFK+IFFVL+DGW+L+ +L++S+ Sbjct: 217 MMMLPPATVALPFKLIFFVLVDGWTLVAGSLIQSY 251 >gi|312884901|ref|ZP_07744591.1| flagellar biosynthesis protein FliP [Vibrio caribbenthicus ATCC BAA-2122] gi|309367378|gb|EFP94940.1| flagellar biosynthesis protein FliP [Vibrio caribbenthicus ATCC BAA-2122] Length = 290 Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 92/219 (42%), Positives = 138/219 (63%), Gaps = 5/219 (2%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 P T ++ + T+L P ++I++T F R ++V SILR MG+ P N V Sbjct: 75 TTNPDGSEDYTINLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 134 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 I+ +A+F+TF++MSP L++ E IQP +N QIT A P FM TR KDL Sbjct: 135 IVGIAIFLTFFIMSPVLNKINEDAIQPYINEQITARKAFDLAQIPMRDFMLKQTRVKDLE 194 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 F++++ S+ T + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++ Sbjct: 195 TFVNISGST-----ATATSDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 249 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 250 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 288 >gi|148976423|ref|ZP_01813129.1| flagellar biosynthesis protein P [Vibrionales bacterium SWAT-3] gi|145964246|gb|EDK29502.1| flagellar biosynthesis protein P [Vibrionales bacterium SWAT-3] Length = 309 Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 89/219 (40%), Positives = 139/219 (63%), Gaps = 5/219 (2%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 + ++ + T+L P ++I++T F R ++V SILR MG+ P N V Sbjct: 94 TTNANGGEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 153 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 II +A+F+TF++MSP +++ E +QP +N QIT A P FM TR KDL Sbjct: 154 IIGIAIFLTFFIMSPVINQVNEQAVQPYLNEQITARQAFDVAQGPIKSFMLKQTRIKDLE 213 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 F++++ S ++T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++ Sbjct: 214 TFVEISGS-----EVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 268 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 269 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 307 >gi|317492418|ref|ZP_07950847.1| flagellar biosynthetic protein FliP [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919757|gb|EFV41087.1| flagellar biosynthetic protein FliP [Enterobacteriaceae bacterium 9_2_54FAA] Length = 248 Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 96/224 (42%), Positives = 145/224 (64%), Gaps = 6/224 (2%) Query: 24 HDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 +++ P W V+T T L+ P L+M+T F R IIV +LR+ +G S Sbjct: 27 PGIVSQPLANGGQNWSLPVQTLVFLTSLTFLPAALLMMTSFTRIIIVLGLLRSALGTPSA 86 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PPN V++ LALF+TF+VMSP D+ + QP ++IT A+ R A+P FM TR Sbjct: 87 PPNQVMLGLALFLTFFVMSPVFDKIYQDAYQPFSQDKITMDVAMDRGAQPLREFMLRQTR 146 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 E DL+L+ +A+ + + + RIL+P+++ SEL+ +F+IGF I +PFLIID++ Sbjct: 147 ETDLALYAKLANLPQ----MAGPEDVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLV 202 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 203 VASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 246 >gi|167585022|ref|ZP_02377410.1| flagellar biosynthesis protein FliP [Burkholderia ubonensis Bu] Length = 253 Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 94/216 (43%), Positives = 144/216 (66%), Gaps = 4/216 (1%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P + + V+T + T+LS P +L+M+T F R IIV S+LR +G S PPN V++ Sbjct: 41 PNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQALGTSSTPPNQVLVG 100 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 LA+F+TF+VMSP LDR+ G +P + + A+QR PF FM TRE DL+LF Sbjct: 101 LAMFLTFFVMSPVLDRAYNDGYKPFSDGSVPMEQAVQRGVAPFKGFMLKQTRETDLALFA 160 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 ++ + + + + +L+P+F+ SEL+ F+IGF I +PFLIIDM+VA+++M+M Sbjct: 161 KIS----KAAPMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSM 216 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMM+ P+++SLPFK++ FV++DGW LL+ +L +SF Sbjct: 217 GMMMVSPSTVSLPFKLMLFVVVDGWQLLLGSLAQSF 252 >gi|220925383|ref|YP_002500685.1| flagellar biosynthetic protein FliP [Methylobacterium nodulans ORS 2060] gi|219949990|gb|ACL60382.1| flagellar biosynthetic protein FliP [Methylobacterium nodulans ORS 2060] Length = 251 Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 106/243 (43%), Positives = 161/243 (66%), Gaps = 4/243 (1%) Query: 3 RYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCF 62 R + LV + +++ ++ ++ + T+L++AP +L+M T F Sbjct: 11 RRAVWLAGLVLVASASGALAQSVTVDLGPSGGVTERALQLVALITVLALAPSVLVMATSF 70 Query: 63 PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122 R ++V SILR+ +G + PPN VI+SLALF+T +VM+PT + GI+PL+ QI ++ Sbjct: 71 TRIVVVLSILRSALGTQTAPPNAVIVSLALFLTAFVMAPTARDAYRAGIEPLVAGQIQQS 130 Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182 A +R A PF FM REKDL LF+D+A + T + + IL P+FMISELR Sbjct: 131 QAFERAAAPFKAFMLRTVREKDLQLFLDLAKAPRPAT----PEAVGLEILTPAFMISELR 186 Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242 R+FEIGFL+ +PFLIID++VA+I+M++GMMMLPP +++LPFK+IFFVL+DGW+L+ +LV Sbjct: 187 RAFEIGFLLFIPFLIIDLVVASILMSVGMMMLPPATVALPFKLIFFVLVDGWTLVAGSLV 246 Query: 243 KSF 245 +S+ Sbjct: 247 QSY 249 >gi|222084871|ref|YP_002543400.1| flagellar biosynthesis transmembrane protein [Agrobacterium radiobacter K84] gi|221722319|gb|ACM25475.1| flagellar biosynthesis transmembrane protein [Agrobacterium radiobacter K84] Length = 252 Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 147/249 (59%), Positives = 196/249 (78%), Gaps = 6/249 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSS----LHDVMNIPADLSISTWIVRTFGIFTILSIAPILL 56 ++ +++PEL A+ D++N P + S++ WI+RTFG+ TILSIAP +L Sbjct: 5 LLILSTLVFAILSPELAMAQQLSQQIPTDLLNTPVNGSVAAWIIRTFGLLTILSIAPGIL 64 Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116 IMVT FPRFII FSILR+GMG+ + P N++++SLALFMTFYVMSPT D++ + G QPL+ Sbjct: 65 IMVTSFPRFIIAFSILRSGMGLATTPSNMILLSLALFMTFYVMSPTFDQAWKDGAQPLLA 124 Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176 NQI+E A+ R+AEPF FM NNTR+KD+ LF+D+A R + ++ I+YR+LIP+F Sbjct: 125 NQISEADAVMRIAEPFRTFMANNTRDKDIKLFVDLAQ--ERGQTVVIDNKIDYRVLIPAF 182 Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236 MISE+RR FEIGFL++LPFL+ID+IV+TIVMAMGMMMLPPTSISLPFK++FFVLIDGW+L Sbjct: 183 MISEIRRGFEIGFLVVLPFLVIDLIVSTIVMAMGMMMLPPTSISLPFKILFFVLIDGWNL 242 Query: 237 LVENLVKSF 245 LV +LV+SF Sbjct: 243 LVGSLVRSF 251 >gi|222053616|ref|YP_002535978.1| flagellar biosynthetic protein FliP [Geobacter sp. FRC-32] gi|221562905|gb|ACM18877.1| flagellar biosynthetic protein FliP [Geobacter sp. FRC-32] Length = 251 Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 97/249 (38%), Positives = 153/249 (61%), Gaps = 8/249 (3%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPAD----LSISTWIVRTFGIFTILSIAPILL 56 +++ FL+T FA+ +++ +++ F + T+LS+AP LL Sbjct: 6 ILKPLLVIAFLLTAASAFAEPVALPTVSVGMGKVSKPGDVAVVLQIFFLMTVLSLAPGLL 65 Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116 +M T F R ++V S LR +G P N +II L+LF+TF++M+P + +QP Sbjct: 66 MMTTSFTRIVVVLSFLRNALGTQQAPSNQIIIGLSLFLTFFIMAPVWQQINVQALQPYRA 125 Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176 IT+ A++R P FM + REKDL+LF++++ D I +IP++ Sbjct: 126 QTITQDEALKRAVAPVRKFMLSQVREKDLALFINLSKLPRPK----NADDIPTMTIIPAY 181 Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236 MISEL+ +F+IGFL+ +PFL++DM+VA+++M+MGMMMLPP ISLPFK++ FVL+DGW L Sbjct: 182 MISELKTAFQIGFLVYIPFLVLDMVVASVLMSMGMMMLPPVMISLPFKILLFVLVDGWGL 241 Query: 237 LVENLVKSF 245 ++ +LVKSF Sbjct: 242 IIGSLVKSF 250 >gi|160896097|ref|YP_001561679.1| flagellar biosynthesis protein FliP [Delftia acidovorans SPH-1] gi|160361681|gb|ABX33294.1| flagellar biosynthetic protein FliP [Delftia acidovorans SPH-1] Length = 261 Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 95/234 (40%), Positives = 145/234 (61%), Gaps = 4/234 (1%) Query: 12 VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71 + A +SL V+ + + + ++T FT LS P +L+M+T F R +IV S+ Sbjct: 30 LASWAQGAPASLPLVIGQGSGGTSFSVPIQTLLFFTALSFLPAILLMMTGFTRIVIVLSL 89 Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131 +R +G S PPN VII L+LF+T +VM PTLDR + P N +T AI++ P Sbjct: 90 MRQALGTQSAPPNQVIIGLSLFLTLFVMGPTLDRVYQEAYVPYTTNAVTFEQAIEKAEAP 149 Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191 FM TR+ D +LF +A T ++ R+L+P+F+ SEL+ +F+IGF+I Sbjct: 150 MRDFMLKQTRQSDFALFARLAKLDAGVT----SETAPLRVLVPAFVTSELKTAFQIGFMI 205 Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PFL+IDM+V++I+M++GMMML P ++LPFK++ FVL DGW+LL+ +L SF Sbjct: 206 FIPFLVIDMVVSSILMSLGMMMLSPVLVALPFKLMLFVLADGWNLLIGSLAASF 259 >gi|27365290|ref|NP_760818.1| flagellar biosynthesis protein FliP [Vibrio vulnificus CMCP6] gi|37680655|ref|NP_935264.1| flagellar biosynthesis protein FliP [Vibrio vulnificus YJ016] gi|320155674|ref|YP_004188053.1| flagellar biosynthesis protein FliP [Vibrio vulnificus MO6-24/O] gi|27361437|gb|AAO10345.1| flagellar biosynthetic protein FliP [Vibrio vulnificus CMCP6] gi|37199404|dbj|BAC95235.1| flagellar biosynthesis pathway, component FliP [Vibrio vulnificus YJ016] gi|319930986|gb|ADV85850.1| flagellar biosynthesis protein FliP [Vibrio vulnificus MO6-24/O] Length = 289 Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 90/219 (41%), Positives = 136/219 (62%), Gaps = 5/219 (2%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 P + ++ + T+L P ++I++T F R ++V SILR MG+ P N V Sbjct: 74 TTNPDGSEDYSVTLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 133 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 II +ALF+TF++MSP ++ E +QP +N Q+T A P FM TR KDL Sbjct: 134 IIGIALFLTFFIMSPVINEVNEQAVQPYLNEQLTAREAFDAAQGPMKAFMLKQTRVKDLE 193 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 F++M+ T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++ Sbjct: 194 TFVNMSG-----EQATNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 248 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 249 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287 >gi|260767696|ref|ZP_05876631.1| flagellar biosynthesis protein FliP [Vibrio furnissii CIP 102972] gi|260617205|gb|EEX42389.1| flagellar biosynthesis protein FliP [Vibrio furnissii CIP 102972] gi|315179472|gb|ADT86386.1| flagellar biosynthetic protein FliP [Vibrio furnissii NCTC 11218] Length = 299 Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats. Identities = 90/219 (41%), Positives = 140/219 (63%), Gaps = 5/219 (2%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 P + ++ + T+L P ++I++T F R ++V SILR MG+ P N V Sbjct: 84 TTNPDGSEDYSVNLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 143 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 I+ +A+F+TF++MSP L++ + IQP +N QI+ A R EP FM TR KDL Sbjct: 144 IVGIAIFLTFFIMSPVLNKINDQAIQPYLNEQISARQAFDRAQEPMKAFMLKQTRVKDLE 203 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 F+++A ++ + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++ Sbjct: 204 TFVNIAG-----AEVQNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 258 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 259 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297 >gi|121612246|ref|YP_001000505.1| flagellar biosynthesis protein FliP [Campylobacter jejuni subsp. jejuni 81-176] gi|30721657|gb|AAP34259.1| FliP [Campylobacter jejuni subsp. jejuni 81-176] gi|87249412|gb|EAQ72372.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp. jejuni 81-176] Length = 244 Score = 211 bits (538), Expect = 7e-53, Method: Composition-based stats. Identities = 103/225 (45%), Positives = 156/225 (69%), Gaps = 4/225 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 +++ ++ P + + + TIL++AP ++ ++T F R I+VFS LR MG S+ Sbjct: 23 TVNLSLSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSM 82 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PPN ++++LAL +TF++M P +S GI+P ++ +I A + A+PF FM NTR Sbjct: 83 PPNTILVTLALILTFFIMEPVATKSYNEGIKPYLSEKIGYEEAFIKGAKPFKDFMLKNTR 142 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 EKDL+LF + + + T D + +L+P+FMISEL+ +FEIGFLI LPFL+IDM+ Sbjct: 143 EKDLALFYRIRNLPNPKT----IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMV 198 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 V++++MAMGMMMLPPT ISLPFK++ FVL+DGW+LLV+ LV+SF+ Sbjct: 199 VSSVLMAMGMMMLPPTMISLPFKLLIFVLVDGWNLLVQRLVESFV 243 >gi|301165896|emb|CBW25469.1| flagellar biosynthesis protein [Bacteriovorax marinus SJ] Length = 252 Score = 211 bits (538), Expect = 7e-53, Method: Composition-based stats. Identities = 95/232 (40%), Positives = 150/232 (64%), Gaps = 7/232 (3%) Query: 17 VFAKSSLHDVMNIPADLSISTWI---VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73 FA+SS ++ + + T + ++ +FT+L++AP +LI+ TCF R I+V S +R Sbjct: 24 AFAQSSGVNLPGMAINFGNGTNLVDTIQVLVLFTVLTMAPAILILCTCFTRIIVVLSFMR 83 Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133 +G S+PPN V+I ALF++ +VM PT ++ + I P + +IT T A+ R+ Sbjct: 84 QAIGTQSMPPNQVLIGFALFLSIFVMQPTGEQIYKNAITPYVEKKITTTVALDRIEFSLR 143 Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193 FM R+ D+ LF D+ NT + + LIP+F+ISEL+ +F+IGFL+ + Sbjct: 144 GFMTKQVRKADIGLFYDVTGRKAPNT----INDVPIHFLIPAFIISELKTAFQIGFLLYI 199 Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 PFLI+DM+VA+++MAMGMMMLPP +SLPFK++ FVL+DGW L+ ++++SF Sbjct: 200 PFLILDMVVASVLMAMGMMMLPPVVVSLPFKLLLFVLVDGWQLVTGSILRSF 251 >gi|124265768|ref|YP_001019772.1| flagellar biosynthesis protein FliP [Methylibium petroleiphilum PM1] gi|124258543|gb|ABM93537.1| flagellar biosynthesis protein [Methylibium petroleiphilum PM1] Length = 254 Score = 211 bits (538), Expect = 7e-53, Method: Composition-based stats. Identities = 99/244 (40%), Positives = 149/244 (61%), Gaps = 9/244 (3%) Query: 7 FALFLVTPELVFAKSS-----LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61 ++ P + A+++ L ++ A + + ++T FT LS P +L+M+T Sbjct: 13 VSVLSAFPAVALAQAAGGNANLPLIVGQGAGGTSYSVPIQTLLFFTALSFLPAVLLMMTG 72 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F R +IV S+LR +G SVPPN V+I L+LF+T +VM PT+D+ +P NQI Sbjct: 73 FTRIVIVLSLLRQALGTQSVPPNQVLIGLSLFLTLFVMGPTIDKVYSEAYKPFAANQIAF 132 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 A+ R P FM TR+ DL LF +A K + +R+L+P+F+ SEL Sbjct: 133 DEALARGEAPMRSFMLKQTRQSDLMLFARLAKL----DPAVKGEDAPFRVLVPAFVTSEL 188 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 + +F+IGFLI +PFLIIDMIVA+++M++GMMML P ++LPFK++ FVL DGW+LL+ +L Sbjct: 189 KSAFQIGFLIFIPFLIIDMIVASVLMSLGMMMLSPVLVALPFKLMLFVLADGWNLLLGSL 248 Query: 242 VKSF 245 SF Sbjct: 249 AASF 252 >gi|167005441|ref|ZP_02271199.1| flagellar biosynthesis protein FliP [Campylobacter jejuni subsp. jejuni 81-176] Length = 244 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 102/225 (45%), Positives = 155/225 (68%), Gaps = 4/225 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 +++ ++ P + + + TIL++AP ++ ++T F R I+VFS LR MG S+ Sbjct: 23 TVNLSLSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSM 82 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PPN ++++LAL +TF++M P +S GI+P ++ +I A + A+PF FM NTR Sbjct: 83 PPNTILVTLALILTFFIMEPVATKSYNEGIKPYLSEKIGYEEAFIKGAKPFKDFMLKNTR 142 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 EKDL+LF + + + T D + +L+P+FMISEL+ +FEIGFLI PFL+IDM+ Sbjct: 143 EKDLALFYRIRNLPNPKT----IDDVPLTVLVPAFMISELKTAFEIGFLIYQPFLVIDMV 198 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 V++++MAMGMMMLPPT ISLPFK++ FVL+DGW+LLV+ LV+SF+ Sbjct: 199 VSSVLMAMGMMMLPPTMISLPFKLLIFVLVDGWNLLVQRLVESFV 243 >gi|238788324|ref|ZP_04632118.1| Flagellar biosynthetic protein fliP [Yersinia frederiksenii ATCC 33641] gi|238723570|gb|EEQ15216.1| Flagellar biosynthetic protein fliP [Yersinia frederiksenii ATCC 33641] Length = 243 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 94/230 (40%), Positives = 147/230 (63%), Gaps = 6/230 (2%) Query: 18 FAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTG 75 A + L +++ P +W V+T T LS P L+M+T F R IIV +LR Sbjct: 16 AALAQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLLRNA 75 Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVF 135 +G S PPN V++ LALF+TF++MSP D+ + P ++I+ A+ + ++P F Sbjct: 76 LGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAMDKGSQPLREF 135 Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195 M TRE DL+L+ +A+ + + + RIL+P+++ SEL+ +F+IGF + +PF Sbjct: 136 MLRQTRESDLALYARLANIP----ALEGPEVVPMRILLPAYVTSELKTAFQIGFTVFIPF 191 Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LIID++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 192 LIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 241 >gi|172059104|ref|YP_001806756.1| flagellar biosynthesis protein FliP [Burkholderia ambifaria MC40-6] gi|171991621|gb|ACB62540.1| flagellar biosynthetic protein FliP [Burkholderia ambifaria MC40-6] Length = 253 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 97/241 (40%), Positives = 149/241 (61%), Gaps = 6/241 (2%) Query: 7 FALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPR 64 L L + L P +T+ V+T + T+LS P +L+M+T F R Sbjct: 16 LILGLAPALACAQAAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTR 75 Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124 IIV S+LR +G + PPN V++ LA+F+TF+VMSP LDR+ G +P + + A Sbjct: 76 IIIVLSLLRQALGTATTPPNQVLVGLAMFLTFFVMSPVLDRAYADGYKPFSDGSMPMEQA 135 Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184 ++R PF FM TRE DL+LF ++ + + + + +L+P+F+ SEL+ Sbjct: 136 VRRGVAPFKTFMLKQTRETDLALFAKIS----KAAPMQGPEDVPLSLLVPAFVTSELKTG 191 Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 F+IGF I +PFLIIDM+VA+++M+MGMMM+ P+++SLPFK++ FVL+DGW LL+ +L +S Sbjct: 192 FQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPSTVSLPFKLMLFVLVDGWQLLIGSLAQS 251 Query: 245 F 245 F Sbjct: 252 F 252 >gi|254559115|ref|YP_003066210.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens DM4] gi|254266393|emb|CAX22157.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens DM4] Length = 253 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 102/215 (47%), Positives = 152/215 (70%), Gaps = 4/215 (1%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 + ++ + T+L++AP +L+M T F R ++V SILR+ +G + PPN V++SL Sbjct: 41 GAGGTTERALQLVALITVLALAPSVLVMATSFTRIVVVLSILRSALGTQTAPPNTVMVSL 100 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 ALF+T +VM+PT + G++PLM QI+++ A +R + PF FM N REKDL LF+D Sbjct: 101 ALFLTAFVMAPTAREAYRTGVEPLMAGQISQSQAFERASAPFKTFMLRNVREKDLKLFLD 160 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 MA + I I+ P+FMISELRR+FEIGFL+ +PFLIID++VA+++MAMG Sbjct: 161 MARQPAP----AGPEAIGLEIVTPAFMISELRRAFEIGFLLFIPFLIIDLVVASVLMAMG 216 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMMLPP +++LPFK+IFFVL+DGW+L+ +L++S+ Sbjct: 217 MMMLPPATVALPFKLIFFVLVDGWTLVAGSLIQSY 251 >gi|217976231|ref|YP_002360378.1| flagellar biosynthetic protein FliP [Methylocella silvestris BL2] gi|217501607|gb|ACK49016.1| flagellar biosynthetic protein FliP [Methylocella silvestris BL2] Length = 247 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 113/231 (48%), Positives = 165/231 (71%), Gaps = 3/231 (1%) Query: 15 ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74 A++ + P + ++ I++ + T+LSIAP +L+M T F RF++ S LR+ Sbjct: 19 SAALAEAVDLGALIPPGGGAAASRIIQLVVLLTVLSIAPGILVMTTSFTRFVVALSFLRS 78 Query: 75 GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134 G+G+ S P NL++ISL+LFMTFYVM+PT +R+ + G++PLM+N++TE A ++ EPF Sbjct: 79 GIGLQSTPANLILISLSLFMTFYVMAPTFERAWDAGVKPLMDNKLTEEQAFGKIVEPFRD 138 Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194 FM + REKDL LF D+A + + + R LIP+FMISELRR FEIGFLI LP Sbjct: 139 FMMSQVREKDLKLFEDLAGEKFKTKSQSTGE---IRTLIPAFMISELRRGFEIGFLIALP 195 Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 FL+IDMIV+T+ M+MGMMMLPP+ I+LP K++FF+LIDGW+LL+ +L++S+ Sbjct: 196 FLVIDMIVSTLTMSMGMMMLPPSVIALPIKILFFILIDGWNLLIGSLIRSY 246 >gi|326319061|ref|YP_004236733.1| flagellar biosynthetic protein FliP [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375897|gb|ADX48166.1| flagellar biosynthetic protein FliP [Acidovorax avenae subsp. avenae ATCC 19860] Length = 259 Score = 211 bits (537), Expect = 8e-53, Method: Composition-based stats. Identities = 97/226 (42%), Positives = 142/226 (62%), Gaps = 4/226 (1%) Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80 SL ++ A + + ++T FT LS P LL+M+T F R +IV S++R +G S Sbjct: 37 GSLPVLIGSGAGGASYSVPIQTLLFFTALSFLPALLLMMTGFTRIVIVLSLIRQAIGTQS 96 Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140 PPN VII L+LF+TF+VM PT DR P NN IT A++R P FM T Sbjct: 97 APPNQVIIGLSLFLTFFVMGPTFDRVYADAYLPYSNNTITFEQAVERAEAPMRSFMLKQT 156 Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200 R+ D +LF +A T + R+L+P+F+ SEL+ +F+IGF+I +PFL+IDM Sbjct: 157 RQSDFALFARLAKLPSGAT----AETAPMRVLVPAFVTSELKSAFQIGFMIFIPFLVIDM 212 Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +V++I+M++GMMML P ++LPFK++ FVL DGW+LL+ +L SF+ Sbjct: 213 VVSSILMSLGMMMLSPVLVALPFKLMLFVLADGWNLLLGSLAASFV 258 >gi|297569685|ref|YP_003691029.1| flagellar biosynthetic protein FliP [Desulfurivibrio alkaliphilus AHT2] gi|296925600|gb|ADH86410.1| flagellar biosynthetic protein FliP [Desulfurivibrio alkaliphilus AHT2] Length = 247 Score = 211 bits (537), Expect = 8e-53, Method: Composition-based stats. Identities = 97/209 (46%), Positives = 145/209 (69%), Gaps = 4/209 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + ++ +FT+L++AP +L+M+TCF R I+VFS LR +G +PPN V++ LA+F+T Sbjct: 42 SVLIELLLVFTVLAMAPAILLMMTCFTRLIVVFSFLRNAIGTQQMPPNQVLVGLAMFLTL 101 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 ++M+P + + I P M +I A+Q AEP FM TREKDL LF+ +A + Sbjct: 102 FIMAPVFSQINQTAIGPYMEEEIGAEEALQLAAEPIREFMFKQTREKDLELFLGLARAPR 161 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 T D + ILIP+FMISEL+ +F IGF++ LPFL+IDM+VA+++++MGMMMLPP Sbjct: 162 PQT----KDDVPTHILIPAFMISELKTAFTIGFVLFLPFLVIDMVVASVLLSMGMMMLPP 217 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++LPFK++ FVL+DGW L+V +LV+SF Sbjct: 218 IMVALPFKILLFVLVDGWYLIVGSLVRSF 246 >gi|114332025|ref|YP_748247.1| flagellar biosynthesis protein FliP [Nitrosomonas eutropha C91] gi|114309039|gb|ABI60282.1| flagellar biosynthetic protein FliP [Nitrosomonas eutropha C91] Length = 261 Score = 211 bits (537), Expect = 8e-53, Method: Composition-based stats. Identities = 96/244 (39%), Positives = 155/244 (63%), Gaps = 7/244 (2%) Query: 5 CFFALFLVTPELVFAK-SSLHDVMNIPADLSISTWIVRTFGIFTILSIA--PILLIMVTC 61 C L +V VFA+ + L + + PA +T+ + + + S+ P ++M++ Sbjct: 20 CIILLLVVGISPVFAQKAGLPAITSTPAAGGGTTYSLSLQTLLLLTSMTFLPATVLMMSS 79 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F R IIV S+LR +G S PPN V++ LALF++F++MSP +D+ P ++I+ Sbjct: 80 FTRIIIVLSLLRQALGTQSSPPNQVLVGLALFLSFFIMSPVIDKMYTEAYLPFSEDKISI 139 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 A+ + ++P +FM TRE D++LF ++ S +I D + +IL+P+++ SEL Sbjct: 140 IEAMDKASDPLKIFMLRQTRETDIALFARISGS----EEIESPDQVPMKILVPAYITSEL 195 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 + +F+IGF++ +PFLIIDM+VA+ +MAMGMMML P ISLPFK++ FVL+DGW LL+ +L Sbjct: 196 KTAFQIGFIVFIPFLIIDMVVASTLMAMGMMMLSPMIISLPFKLMLFVLVDGWHLLIGSL 255 Query: 242 VKSF 245 +SF Sbjct: 256 TQSF 259 >gi|57237661|ref|YP_178909.1| flagellar biosynthesis protein FliP [Campylobacter jejuni RM1221] gi|86150212|ref|ZP_01068439.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp. jejuni CF93-6] gi|86153364|ref|ZP_01071568.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp. jejuni HB93-13] gi|88597515|ref|ZP_01100749.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp. jejuni 84-25] gi|157415087|ref|YP_001482343.1| flagellar biosynthesis protein FliP [Campylobacter jejuni subsp. jejuni 81116] gi|218562448|ref|YP_002344227.1| flagellar biosynthesis protein FliP [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|57166465|gb|AAW35244.1| flagellar biosynthetic protein FliP [Campylobacter jejuni RM1221] gi|85839328|gb|EAQ56590.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp. jejuni CF93-6] gi|85843090|gb|EAQ60301.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp. jejuni HB93-13] gi|88190107|gb|EAQ94082.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp. jejuni 84-25] gi|112360154|emb|CAL34948.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|157386051|gb|ABV52366.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni 81116] gi|284926065|gb|ADC28417.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp. jejuni IA3902] gi|307747729|gb|ADN90999.1| Flagellar biosynthetic protein FliP [Campylobacter jejuni subsp. jejuni M1] gi|315058270|gb|ADT72599.1| Flagellar biosynthesis protein fliP [Campylobacter jejuni subsp. jejuni S3] gi|315930473|gb|EFV09528.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp. jejuni 305] gi|315931173|gb|EFV10146.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp. jejuni 327] Length = 244 Score = 211 bits (537), Expect = 8e-53, Method: Composition-based stats. Identities = 103/225 (45%), Positives = 155/225 (68%), Gaps = 4/225 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 +++ ++ P + + + TIL++AP ++ ++T F R I+VFS LR MG S+ Sbjct: 23 TVNLSLSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSM 82 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PPN ++++LAL +TF++M P +S GI+P + +I A + A+PF FM NTR Sbjct: 83 PPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNTR 142 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 EKDL+LF + + + T D + +L+P+FMISEL+ +FEIGFLI LPFL+IDM+ Sbjct: 143 EKDLALFYRIRNLPNPKT----IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMV 198 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 V++++MAMGMMMLPPT ISLPFK++ FVL+DGW+LLV+ LV+SF+ Sbjct: 199 VSSVLMAMGMMMLPPTMISLPFKLLIFVLVDGWNLLVQRLVESFV 243 >gi|84388121|ref|ZP_00991017.1| flagellar biosynthesis protein [Vibrio splendidus 12B01] gi|84377188|gb|EAP94058.1| flagellar biosynthesis protein [Vibrio splendidus 12B01] Length = 309 Score = 211 bits (537), Expect = 8e-53, Method: Composition-based stats. Identities = 87/219 (39%), Positives = 138/219 (63%), Gaps = 5/219 (2%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 + ++ + T+L P ++I++T F R ++V SILR MG+ P N V Sbjct: 94 TTNANGGEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 153 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 II +A+F+TF++MSP +++ E +QP +N QI+ A P FM TR KDL Sbjct: 154 IIGIAIFLTFFIMSPVINQVNEQAVQPYLNEQISARQAFDVAQGPIKSFMLKQTRIKDLE 213 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 F++++ ++T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++ Sbjct: 214 TFVEISG-----AEVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 268 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 269 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 307 >gi|160876167|ref|YP_001555483.1| flagellar biosynthesis protein FliP [Shewanella baltica OS195] gi|217972626|ref|YP_002357377.1| flagellar biosynthesis protein FliP [Shewanella baltica OS223] gi|160861689|gb|ABX50223.1| flagellar biosynthetic protein FliP [Shewanella baltica OS195] gi|217497761|gb|ACK45954.1| flagellar biosynthetic protein FliP [Shewanella baltica OS223] gi|315268363|gb|ADT95216.1| flagellar biosynthetic protein FliP [Shewanella baltica OS678] Length = 248 Score = 211 bits (537), Expect = 9e-53, Method: Composition-based stats. Identities = 95/247 (38%), Positives = 145/247 (58%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIM 58 M+ + L P A L V + + V + + T LS P +LIM Sbjct: 5 MLALVGLVILLCMPSAWAADGVLPAVTVTTGPDGSTEYSVTMQILLLMTSLSFLPAMLIM 64 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIV SILR +G+ P N V+I ++LFMTF++M+P DR + G++P + Q Sbjct: 65 LTSFTRIIIVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDRIYDEGVKPYIEEQ 124 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 +T A ++ EP FM R DL F++++ +I + +LIP+F+ Sbjct: 125 LTLQQAFEKGKEPLKGFMLGQVRTTDLKTFIEISGYK----NIKSPEEAPMSVLIPAFIT 180 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK++ FVL+DGWSL++ Sbjct: 181 SELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVL 240 Query: 239 ENLVKSF 245 L SF Sbjct: 241 GTLANSF 247 >gi|251772432|gb|EES52999.1| flagellar biosynthetic protein FliP [Leptospirillum ferrodiazotrophum] Length = 272 Score = 210 bits (536), Expect = 9e-53, Method: Composition-based stats. Identities = 97/218 (44%), Positives = 142/218 (65%), Gaps = 3/218 (1%) Query: 28 NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87 N + S V F + T+LS+AP +L+M+T F R ++V S LR +G VPPN V+ Sbjct: 57 NGNPEPSQVAMTVELFLLLTVLSLAPAILVMMTSFTRIVVVLSFLRQALGTAQVPPNQVM 116 Query: 88 ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147 + L+LF+TF++M+P IQP + +I A+ R P FM R+KDL++ Sbjct: 117 VGLSLFLTFFIMAPVWQTMNRTAIQPYLAKEIAPDVALTRGMAPVRDFMFRQVRKKDLAM 176 Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 F +AH D I +LIP+F++SEL +FE+GFLI LPFLI+D++V++++M Sbjct: 177 FERIAHLP---ETPASRDDIPTYVLIPAFVVSELSTAFEMGFLIYLPFLILDVVVSSVLM 233 Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MGMMMLPPT +SLPFK++ FVL+DGWSL+V +LV+SF Sbjct: 234 SMGMMMLPPTVVSLPFKILLFVLVDGWSLIVGSLVQSF 271 >gi|167813515|ref|ZP_02445195.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei 91] gi|167822057|ref|ZP_02453528.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei 9] gi|167843670|ref|ZP_02469178.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei B7210] gi|167892141|ref|ZP_02479543.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei 7894] gi|167900653|ref|ZP_02487858.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei NCTC 13177] gi|167908873|ref|ZP_02495964.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei 112] gi|167916912|ref|ZP_02504003.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei BCC215] Length = 253 Score = 210 bits (536), Expect = 9e-53, Method: Composition-based stats. Identities = 94/216 (43%), Positives = 140/216 (64%), Gaps = 4/216 (1%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P + + V+T + T+LS P +L+M+T F R IIV S+LR +G S PPN V++ Sbjct: 41 PNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQAIGTASTPPNQVLVG 100 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 LALF+T +VMSP LDR+ +P + A+QR PF FM TRE DL+LF Sbjct: 101 LALFLTLFVMSPVLDRAYNDAYKPFSEGTLQMDQAVQRGTAPFKAFMLKQTRETDLALFA 160 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 ++ + + + + +L+P+F+ SEL+ F+IGF I +PFLIIDM+VA+++M+M Sbjct: 161 KIS----KAAPMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSM 216 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMM+ P ++SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 217 GMMMVSPATVSLPFKLMLFVLVDGWQLLIGSLAQSF 252 >gi|148926523|ref|ZP_01810205.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni CG8486] gi|145845217|gb|EDK22311.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni CG8486] Length = 244 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 103/225 (45%), Positives = 155/225 (68%), Gaps = 4/225 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 +++ ++ P + + + TIL++AP ++ ++T F R I+VFS LR MG S+ Sbjct: 23 TVNLSLSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSM 82 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PPN ++++LAL +TF++M P +S GI+P + +I A + A+PF FM NTR Sbjct: 83 PPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNTR 142 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 EKDL+LF + + + T D + +L+P+FMISEL+ +FEIGFLI LPFL+IDM+ Sbjct: 143 EKDLALFYRIRNLPNPKT----IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMV 198 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 V++++MAMGMMMLPPT ISLPFK++ FVL+DGW+LLV+ LV+SF+ Sbjct: 199 VSSVLMAMGMMMLPPTMISLPFKLLIFVLVDGWNLLVQRLVESFV 243 >gi|238758099|ref|ZP_04619279.1| Flagellar biosynthetic protein fliP [Yersinia aldovae ATCC 35236] gi|238703637|gb|EEP96174.1| Flagellar biosynthetic protein fliP [Yersinia aldovae ATCC 35236] Length = 249 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 95/230 (41%), Positives = 146/230 (63%), Gaps = 6/230 (2%) Query: 18 FAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTG 75 A + L +++ P +W V+T T LS P L+M+T F R IIV +LR Sbjct: 22 AALAQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLLRNA 81 Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVF 135 +G S PPN V++ L LF+TF++MSP D+ + P ++I+ AI + A+P F Sbjct: 82 LGTPSAPPNQVMLGLTLFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAIDKGAQPLREF 141 Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195 M TRE DL+L+ +A+ + + + RIL+P+++ SEL+ +F+IGF + +PF Sbjct: 142 MLRQTRESDLALYARLANLP----PLEGPEVVPMRILLPAYVTSELKTAFQIGFTVFIPF 197 Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LIID++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 198 LIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 247 >gi|153951658|ref|YP_001398263.1| flagellar biosynthesis protein FliP [Campylobacter jejuni subsp. doylei 269.97] gi|152939104|gb|ABS43845.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp. doylei 269.97] Length = 244 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 103/225 (45%), Positives = 154/225 (68%), Gaps = 4/225 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 +++ ++ P + + + TIL++AP ++ ++T F R I+VFS LR MG S+ Sbjct: 23 TINLSLSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSM 82 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PPN ++++LAL +TF++M P +S GI+P + QI A + +PF FM NTR Sbjct: 83 PPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEQIGYEEAFIKGTKPFKDFMLKNTR 142 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 EKDL+LF + + + T D + +L+P+FMISEL+ +FEIGFLI LPFL+IDM+ Sbjct: 143 EKDLALFYRIRNLPNPKT----IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMV 198 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 V++++MAMGMMMLPPT ISLPFK++ FVL+DGW+LLV+ LV+SF+ Sbjct: 199 VSSVLMAMGMMMLPPTMISLPFKLLIFVLVDGWNLLVQRLVESFV 243 >gi|167750712|ref|ZP_02422839.1| hypothetical protein EUBSIR_01690 [Eubacterium siraeum DSM 15702] gi|167656391|gb|EDS00521.1| hypothetical protein EUBSIR_01690 [Eubacterium siraeum DSM 15702] Length = 307 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 91/218 (41%), Positives = 133/218 (61%), Gaps = 9/218 (4%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + + + T+LS+AP LL+M+T F R II FS LRT M S PPN+V+ L+LF+T Sbjct: 88 SQSLEVILLVTVLSLAPSLLVMMTSFARIIICFSFLRTAMQTQSTPPNMVLTGLSLFLTI 147 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 ++M P E QP ++T AI +P FM T D+ F+D+ S Sbjct: 148 FIMWPVFSEINETAYQPYAAGEMTMEQAIDAAGKPLKTFMLKQTTNDDMKFFLDLKGQSM 207 Query: 157 RNTDITKNDHIE---------YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 + D+I + +IP+F++SEL+R+F++GFLI +PFL+ID++V++ +M Sbjct: 208 SDVTGGATDNITLENYSEKLGFETVIPAFIVSELKRAFQMGFLIFIPFLVIDLVVSSTLM 267 Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 AMGMMMLPP ISLPFK+I FVL+DGW L+V +V S+ Sbjct: 268 AMGMMMLPPAMISLPFKIILFVLVDGWQLMVGTIVNSY 305 >gi|221214540|ref|ZP_03587510.1| flagellar biosynthetic protein FliP [Burkholderia multivorans CGD1] gi|221165430|gb|EED97906.1| flagellar biosynthetic protein FliP [Burkholderia multivorans CGD1] Length = 253 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 94/216 (43%), Positives = 144/216 (66%), Gaps = 4/216 (1%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P + + V+T + T+LS P +++M+T F R IIV S+LR +G + PPN V++ Sbjct: 41 PNGGTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTRIIIVLSLLRQALGTATTPPNQVLVG 100 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 LALF+TF+VMSP LDR+ G +P + + A+QR PF FM TRE DL+LF Sbjct: 101 LALFLTFFVMSPVLDRAYTDGYKPFSDGTLPMEQAVQRGVAPFKGFMLKQTRETDLALFA 160 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 ++ + + + + +L+P+F+ SEL+ F+IGF I +PFLIIDM+VA+++M+M Sbjct: 161 KIS----KAAPMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSM 216 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMM+ P+++SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 217 GMMMVSPSTVSLPFKLMLFVLVDGWQLLIGSLAQSF 252 >gi|291558213|emb|CBL35330.1| flagellar biosynthetic protein FliP [Eubacterium siraeum V10Sc8a] Length = 296 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 91/218 (41%), Positives = 133/218 (61%), Gaps = 9/218 (4%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + + + T+LS+AP LL+M+T F R II FS LRT M S PPN+V+ L+LF+T Sbjct: 77 SQSLEVILLVTVLSLAPSLLVMMTSFARIIICFSFLRTAMQTQSTPPNMVLTGLSLFLTI 136 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 ++M P E QP ++T AI +P FM T D+ F+D+ S Sbjct: 137 FIMWPVFSEINETAYQPYAAGEMTMEQAIDAAGKPLKTFMLKQTTNDDMKFFLDLKGQSM 196 Query: 157 RNTDITKNDHIE---------YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 + D+I + +IP+F++SEL+R+F++GFLI +PFL+ID++V++ +M Sbjct: 197 SDVTGGATDNITLENYSEKLGFETVIPAFIVSELKRAFQMGFLIFIPFLVIDLVVSSTLM 256 Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 AMGMMMLPP ISLPFK+I FVL+DGW L+V +V S+ Sbjct: 257 AMGMMMLPPAMISLPFKIILFVLVDGWQLMVGTIVNSY 294 >gi|295678047|ref|YP_003606571.1| flagellar biosynthetic protein FliP [Burkholderia sp. CCGE1002] gi|295437890|gb|ADG17060.1| flagellar biosynthetic protein FliP [Burkholderia sp. CCGE1002] Length = 269 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 99/235 (42%), Positives = 148/235 (62%), Gaps = 7/235 (2%) Query: 15 ELVFAK-SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71 L FA+ + L P +T+ V+T + T+LS P +++M+T F R +IV S+ Sbjct: 39 TLSFAQTAGLPAFTTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTRIVIVLSL 98 Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131 LR +G + PPN V++ LALF+TF+VMSP LD++ G +P + A+ R P Sbjct: 99 LRQALGTTTTPPNQVLVGLALFLTFFVMSPVLDKAYNEGYKPFSEGTLPMDQAVSRGVAP 158 Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191 F FM TRE DL+LF ++H + + + +L+PSF+ SEL+ F IGF I Sbjct: 159 FKTFMLRQTRESDLALFARISH----AAPMQGPEDVPLSLLVPSFVTSELKTGFTIGFTI 214 Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +PFLIIDM+VA+++M+MGMMM+ P +ISLPFK++ FVL+DGW LL+ +L +SF+ Sbjct: 215 FIPFLIIDMVVASVLMSMGMMMVSPATISLPFKLMLFVLVDGWQLLLGSLAQSFV 269 >gi|283957192|ref|ZP_06374656.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp. jejuni 1336] gi|283791368|gb|EFC30173.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp. jejuni 1336] Length = 244 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 102/225 (45%), Positives = 154/225 (68%), Gaps = 4/225 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 +++ ++ P + + + TIL++AP ++ ++T F R I+VFS LR MG S+ Sbjct: 23 TVNLSLSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSM 82 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PPN ++++LAL +TF++M P +S GI+P + +I A + +PF FM NTR Sbjct: 83 PPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEKIGYEEAFIKGVKPFKDFMLKNTR 142 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 EKDL+LF + + + T D + +L+P+FMISEL+ +FEIGFLI LPFL+IDM+ Sbjct: 143 EKDLALFYRIRNLPNPKT----IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMV 198 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 V++++MAMGMMMLPPT ISLPFK++ FVL+DGW+LLV+ LV+SF+ Sbjct: 199 VSSVLMAMGMMMLPPTMISLPFKLLIFVLVDGWNLLVQRLVESFV 243 >gi|145598592|ref|YP_001162668.1| flagellar biosynthesis protein FliP [Yersinia pestis Pestoides F] gi|149366232|ref|ZP_01888267.1| flagellar biosynthetic protein FliP [Yersinia pestis CA88-4125] gi|153950312|ref|YP_001401271.1| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis IP 31758] gi|165925983|ref|ZP_02221815.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Orientalis str. F1991016] gi|165938702|ref|ZP_02227257.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Orientalis str. IP275] gi|166010952|ref|ZP_02231850.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua str. E1979001] gi|166210900|ref|ZP_02236935.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua str. B42003004] gi|167420038|ref|ZP_02311791.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425832|ref|ZP_02317585.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170024627|ref|YP_001721132.1| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis YPIII] gi|186895134|ref|YP_001872246.1| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis PB1/+] gi|218928941|ref|YP_002346816.1| flagellar biosynthesis protein FliP [Yersinia pestis CO92] gi|229896265|ref|ZP_04511435.1| flagellar biosynthetic protein FliP [Yersinia pestis Pestoides A] gi|229897202|ref|ZP_04512358.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Orientalis str. PEXU2] gi|229897929|ref|ZP_04513080.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Orientalis str. India 195] gi|229902840|ref|ZP_04517957.1| flagellar biosynthetic protein FliP [Yersinia pestis Nepal516] gi|270486627|ref|ZP_06203701.1| flagellar biosynthetic protein FliP [Yersinia pestis KIM D27] gi|294504013|ref|YP_003568075.1| flagellar biosynthesis protein [Yersinia pestis Z176003] gi|21959354|gb|AAM86043.1|AE013852_5 flagellar biosynthesis protein [Yersinia pestis KIM 10] gi|45436250|gb|AAS61806.1| flagellar biosynthesis protein [Yersinia pestis biovar Microtus str. 91001] gi|51589311|emb|CAH20932.1| flagellar biosynthetic protein FliP [Yersinia pseudotuberculosis IP 32953] gi|108776112|gb|ABG18631.1| flagellar biosynthetic protein FliP [Yersinia pestis Nepal516] gi|108779105|gb|ABG13163.1| flagellar biosynthetic protein FliP [Yersinia pestis Antiqua] gi|145210288|gb|ABP39695.1| flagellar biosynthetic protein FliP [Yersinia pestis Pestoides F] gi|149292645|gb|EDM42719.1| flagellar biosynthetic protein FliP [Yersinia pestis CA88-4125] gi|152961807|gb|ABS49268.1| flagellar biosynthetic protein FliP [Yersinia pseudotuberculosis IP 31758] gi|165913316|gb|EDR31938.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Orientalis str. IP275] gi|165922187|gb|EDR39364.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Orientalis str. F1991016] gi|165990296|gb|EDR42597.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua str. E1979001] gi|166208080|gb|EDR52560.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua str. B42003004] gi|166961733|gb|EDR57754.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167055231|gb|EDR65028.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751161|gb|ACA68679.1| flagellar biosynthetic protein FliP [Yersinia pseudotuberculosis YPIII] gi|186698160|gb|ACC88789.1| flagellar biosynthetic protein FliP [Yersinia pseudotuberculosis PB1/+] gi|229680287|gb|EEO76386.1| flagellar biosynthetic protein FliP [Yersinia pestis Nepal516] gi|229688970|gb|EEO81035.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Orientalis str. India 195] gi|229693539|gb|EEO83588.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701188|gb|EEO89217.1| flagellar biosynthetic protein FliP [Yersinia pestis Pestoides A] gi|262361801|gb|ACY58522.1| flagellar biosynthesis protein [Yersinia pestis D106004] gi|262366063|gb|ACY62620.1| flagellar biosynthesis protein [Yersinia pestis D182038] gi|270335131|gb|EFA45908.1| flagellar biosynthetic protein FliP [Yersinia pestis KIM D27] gi|294354472|gb|ADE64813.1| flagellar biosynthesis protein [Yersinia pestis Z176003] gi|320015442|gb|ADV99013.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 274 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 98/242 (40%), Positives = 150/242 (61%), Gaps = 8/242 (3%) Query: 6 FFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFP 63 L L V A+ L +++ P +W V+T T LS P L+M+T F Sbjct: 37 LGLLTLFCSPSVLAQ--LPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFT 94 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 R IIV +LR MG S PPN V++ LALF+TF++MSP D+ + P ++I+ Sbjct: 95 RIIIVLGLLRNAMGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQEAYLPFSQDKISMDV 154 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 A+ + ++P FM TRE DL+L+ +A+ + + + RIL+P+++ SEL+ Sbjct: 155 ALDKGSQPLREFMLRQTRESDLALYARLANLP----PLEGPEMVPMRILLPAYVTSELKT 210 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 +F+IGF + +PFLIID++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L + Sbjct: 211 AFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQ 270 Query: 244 SF 245 SF Sbjct: 271 SF 272 >gi|171316887|ref|ZP_02906096.1| flagellar biosynthetic protein FliP [Burkholderia ambifaria MEX-5] gi|171097968|gb|EDT42786.1| flagellar biosynthetic protein FliP [Burkholderia ambifaria MEX-5] Length = 253 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 97/241 (40%), Positives = 149/241 (61%), Gaps = 6/241 (2%) Query: 7 FALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPR 64 L L + L P +T+ V+T + T+LS P +L+M+T F R Sbjct: 16 LILGLAPALACAQAAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTR 75 Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124 IIV S+LR +G + PPN V++ LA+F+TF+VMSP LDR+ G +P + + A Sbjct: 76 IIIVLSLLRQALGTATTPPNQVLVGLAMFLTFFVMSPVLDRAYADGYKPFSDGSMPMEQA 135 Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184 ++R PF FM TRE DL+LF ++ + + + + +L+P+F+ SEL+ Sbjct: 136 VRRGVAPFKTFMLKQTRETDLALFAKIS----KAAPMQGPEDVPLSLLVPAFVTSELKTG 191 Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 F+IGF I +PFLIIDM+VA+++M+MGMMM+ P+++SLPFK++ FVL+DGW LL+ +L +S Sbjct: 192 FQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPSTVSLPFKLMLFVLVDGWQLLIGSLAQS 251 Query: 245 F 245 F Sbjct: 252 F 252 >gi|291280091|ref|YP_003496926.1| flagellar transport protein FliP [Deferribacter desulfuricans SSM1] gi|290754793|dbj|BAI81170.1| flagellar transport protein FliP [Deferribacter desulfuricans SSM1] Length = 246 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 103/247 (41%), Positives = 156/247 (63%), Gaps = 9/247 (3%) Query: 4 YCFFALFLVTPELVFAKSSLHD-----VMNIPADLSISTWIVRTFGIFTILSIAPILLIM 58 Y F L LV A ++ ++ + + ++ + TIL++AP +L+M Sbjct: 3 YICFIFLLFGQNLVLAADNIPLPAVRFGIDTAKNQNDVAITLQIIFLITILTLAPAILLM 62 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 VT F R IIVFS LR+ +G PPN V+I LALF+TF++MSP L+ + +QP M+ + Sbjct: 63 VTSFTRLIIVFSFLRSALGTQQSPPNQVLIGLALFLTFFIMSPVLNDMYKNAVQPYMDGK 122 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 + T A+ +P F+ NTR+K+L F++++ T D I +LIP+F+ Sbjct: 123 LNFTQALVEAKKPLRKFLLKNTRKKELLTFIEISKVQRPKT----PDDIPDSVLIPAFIT 178 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +FEIGFL+ LPFL+ID +VA+++++MGMMMLPP ISLPFK++ FVL+DGW L+V Sbjct: 179 SELQTAFEIGFLLFLPFLVIDFVVASVLLSMGMMMLPPVMISLPFKILLFVLVDGWGLIV 238 Query: 239 ENLVKSF 245 ++VKSF Sbjct: 239 GSMVKSF 245 >gi|146341897|ref|YP_001206945.1| flagellar biosynthesis protein FliP [Bradyrhizobium sp. ORS278] gi|146194703|emb|CAL78728.1| Flagellar transport protein FliP [Bradyrhizobium sp. ORS278] Length = 226 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 113/228 (49%), Positives = 161/228 (70%), Gaps = 4/228 (1%) Query: 18 FAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMG 77 A + + ++ V+ + T+LSIAP +L+M+T F R ++V S+LRT MG Sbjct: 1 MAAQDISINLGGAGGGGVTERAVQLIALLTVLSIAPSILVMMTSFTRIVVVLSLLRTAMG 60 Query: 78 MGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMR 137 + PPN VII+LA+F+T +VM P L +S + G++PL+ NQIT A+QR + P FM+ Sbjct: 61 TATAPPNSVIIALAMFLTAFVMGPVLQKSYDDGVRPLIENQITVEDALQRASVPLRGFMQ 120 Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197 N REKDL LFMD++ + T D + RIL+P+FMISEL+R+FEIGFL+ LPFLI Sbjct: 121 KNVREKDLKLFMDLSGEAPPAT----PDELSLRILVPAFMISELKRAFEIGFLLFLPFLI 176 Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ID++VA+++M+MGMMMLPP +SLPFK+IFFVL+DGWSL+ +LV+S+ Sbjct: 177 IDLVVASVLMSMGMMMLPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY 224 >gi|58039965|ref|YP_191929.1| flagellar biosynthesis protein FliP [Gluconobacter oxydans 621H] gi|58002379|gb|AAW61273.1| Flagellar biosynthetic protein FliP [Gluconobacter oxydans 621H] Length = 255 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 104/247 (42%), Positives = 162/247 (65%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIP--ADLSISTWIVRTFGIFTILSIAPILLIM 58 ++ L P L A++ D+ ++ +V+ + T+LS+AP LL+M Sbjct: 11 LVPVFVLLACLAFPHLAHAQAVSIDLGQNGASGGAGTTSRLVQLTALITVLSLAPSLLVM 70 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R +IV S+LR+ +G +PPN V+I LALF+T +VM PTL +S + GI+PLM + Sbjct: 71 ITAFTRIVIVLSLLRSALGAQGMPPNTVLIGLALFLTLFVMQPTLQKSWDAGIEPLMAGR 130 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 + E + A+PF FM R D++ F+++AH K +R+L+P+FMI Sbjct: 131 VGEMEGLTAAAQPFHDFMAVTARPADVATFLNIAHEKPP----AKIGDTPWRVLVPAFMI 186 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 ELRR FE+GFL+ LPFL+ID++V++++M++GMMMLPP+++SLPFK+IFFV++DGWSL+ Sbjct: 187 GELRRGFEMGFLLYLPFLVIDLVVSSVLMSLGMMMLPPSTVSLPFKLIFFVVVDGWSLVA 246 Query: 239 ENLVKSF 245 +LV+SF Sbjct: 247 GSLVRSF 253 >gi|197120185|ref|YP_002140612.1| flagellar biosynthesis protein FliP [Geobacter bemidjiensis Bem] gi|197089545|gb|ACH40816.1| flagellar biogenesis protein FliP [Geobacter bemidjiensis Bem] Length = 247 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 91/209 (43%), Positives = 144/209 (68%), Gaps = 4/209 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + +++ F + T++S+AP LL+M T F R ++V S LR+ +G P N +++ L+LF+TF Sbjct: 42 SVVLQIFFLMTVISLAPSLLMMTTSFTRIVVVLSFLRSALGTQQAPSNQIVVGLSLFLTF 101 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 ++M+P + +QP +QIT+ A++R P FM + REKDL+LF++++ Sbjct: 102 FIMAPVWQQVNANALQPYRASQITQEEAVKRGVAPLRKFMLSQVREKDLALFINLSKLPR 161 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 D I LIP++M+SEL+ +F+IGFLI +PFL++DM+VA+++M+MGMMMLPP Sbjct: 162 PK----NADDIPTLTLIPAYMVSELKTAFQIGFLIFIPFLVLDMVVASVLMSMGMMMLPP 217 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLPFK++ FVL+DGW L++ +LVKSF Sbjct: 218 VMISLPFKILLFVLVDGWGLVIGSLVKSF 246 >gi|86152107|ref|ZP_01070319.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp. jejuni 260.94] gi|85840892|gb|EAQ58142.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp. jejuni 260.94] Length = 244 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 103/225 (45%), Positives = 155/225 (68%), Gaps = 4/225 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 +++ ++ P + + + TIL++AP ++ ++T F R I+VFS LR MG S+ Sbjct: 23 TVNLSLSAPNTPNQLVTTLNIVIVLTILALAPSIVFVITSFLRLIVVFSFLRQAMGTQSM 82 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PPN ++++LAL +TF++M P +S GI+P + +I A + A+PF FM NTR Sbjct: 83 PPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNTR 142 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 EKDL+LF + + + T D + +L+P+FMISEL+ +FEIGFLI LPFL+IDM+ Sbjct: 143 EKDLALFYRIRNLPNPKT----IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMV 198 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 V++++MAMGMMMLPPT ISLPFK++ FVL+DGW+LLV+ LV+SF+ Sbjct: 199 VSSVLMAMGMMMLPPTMISLPFKLLIFVLVDGWNLLVQRLVESFV 243 >gi|291532049|emb|CBK97634.1| flagellar biosynthetic protein FliP [Eubacterium siraeum 70/3] Length = 307 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 90/218 (41%), Positives = 132/218 (60%), Gaps = 9/218 (4%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + + + T+LS+AP LL+M+T F R II FS LRT M PPN+V+ L+LF+T Sbjct: 88 SQSLEVILLVTVLSLAPSLLVMMTSFARIIICFSFLRTAMQTQPTPPNMVLTGLSLFLTI 147 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 ++M P E QP ++T AI +P FM T D+ F+D+ S Sbjct: 148 FIMWPVFSEINETAYQPYAAGEMTMEQAIDAAGKPLKTFMLKQTTNDDMKFFLDLKGQSM 207 Query: 157 RNTDITKNDHIE---------YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 + D+I + +IP+F++SEL+R+F++GFLI +PFL+ID++V++ +M Sbjct: 208 SDVTGGATDNITLENYSEKLGFETVIPAFIVSELKRAFQMGFLIFIPFLVIDLVVSSTLM 267 Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 AMGMMMLPP ISLPFK+I FVL+DGW L+V +V S+ Sbjct: 268 AMGMMMLPPAMISLPFKIILFVLVDGWQLMVGTIVNSY 305 >gi|218528509|ref|YP_002419325.1| flagellar biosynthetic protein FliP [Methylobacterium chloromethanicum CM4] gi|240137103|ref|YP_002961572.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens AM1] gi|218520812|gb|ACK81397.1| flagellar biosynthetic protein FliP [Methylobacterium chloromethanicum CM4] gi|240007069|gb|ACS38295.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens AM1] Length = 253 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 102/215 (47%), Positives = 152/215 (70%), Gaps = 4/215 (1%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 + ++ + T+L++AP +L+M T F R ++V SILR+ +G + PPN V++SL Sbjct: 41 GAGGTTERALQLVALITVLALAPSVLVMATSFTRIVVVLSILRSALGTQTAPPNTVMVSL 100 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 ALF+T +VM+PT + G++PLM QI+++ A +R + PF FM N REKDL LF+D Sbjct: 101 ALFLTAFVMAPTAREAYRTGVEPLMAGQISQSQAFERASAPFKTFMLRNVREKDLKLFLD 160 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 MA + I I+ P+FMISELRR+FEIGFL+ +PFLIID++VA+++MAMG Sbjct: 161 MARQPAP----AGPEAIGLEIVTPAFMISELRRAFEIGFLLFIPFLIIDLVVASVLMAMG 216 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMMLPP +++LPFK+IFFVL+DGW+L+ +L++S+ Sbjct: 217 MMMLPPATVALPFKLIFFVLVDGWTLVAGSLIQSY 251 >gi|115350085|ref|YP_771924.1| flagellar biosynthesis protein FliP [Burkholderia ambifaria AMMD] gi|115280073|gb|ABI85590.1| flagellar biosynthetic protein FliP [Burkholderia ambifaria AMMD] Length = 253 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 97/241 (40%), Positives = 149/241 (61%), Gaps = 6/241 (2%) Query: 7 FALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPR 64 L L + L P +T+ V+T + T+LS P +L+M+T F R Sbjct: 16 LILGLAPALACAQAAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTR 75 Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124 IIV S+LR +G + PPN V++ LA+F+TF+VMSP LDR+ G +P + + A Sbjct: 76 IIIVLSLLRQALGTATTPPNQVLVGLAMFLTFFVMSPVLDRAYADGYKPFSDGSMPMEQA 135 Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184 ++R PF FM TRE DL+LF ++ + + + + +L+P+F+ SEL+ Sbjct: 136 VRRGVAPFKTFMLKQTRETDLALFAKIS----KAAPMQGPEDVPLSLLVPAFVTSELKTG 191 Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 F+IGF I +PFLIIDM+VA+++M+MGMMM+ P+++SLPFK++ FVL+DGW LL+ +L +S Sbjct: 192 FQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPSTVSLPFKLMLFVLVDGWQLLIGSLAQS 251 Query: 245 F 245 F Sbjct: 252 F 252 >gi|238751771|ref|ZP_04613259.1| Flagellar biosynthetic protein fliP [Yersinia rohdei ATCC 43380] gi|238710042|gb|EEQ02272.1| Flagellar biosynthetic protein fliP [Yersinia rohdei ATCC 43380] Length = 243 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 97/247 (39%), Positives = 153/247 (61%), Gaps = 8/247 (3%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 M + L+ V+A+ L +++ P +W V+T T LS P L+M Sbjct: 1 MNKPLLALFALLCSPSVWAQ--LPGIISQPLANGGQSWSLPVQTLVFITALSFLPAALLM 58 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIV +LR +G S PPN V++ LALF+TF++MSP D+ + P ++ Sbjct: 59 MTSFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDK 118 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ A+ + ++P FM TRE DL+L+ +A+ + + + RIL+P+++ Sbjct: 119 ISMEVAMDKGSQPLREFMLRQTRETDLALYARLANLP----PLEGPEVVPMRILLPAYVT 174 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ Sbjct: 175 SELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLL 234 Query: 239 ENLVKSF 245 +L +SF Sbjct: 235 GSLAQSF 241 >gi|260598457|ref|YP_003211028.1| flagellar biosynthetic protein fliP [Cronobacter turicensis z3032] gi|260217634|emb|CBA31933.1| Flagellar biosynthetic protein fliP [Cronobacter turicensis z3032] Length = 223 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 98/225 (43%), Positives = 149/225 (66%), Gaps = 6/225 (2%) Query: 23 LHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80 + +++ P +W V+T T L+ P +L+M+T F R IIVF +LR +G S Sbjct: 1 MPGLVSQPMSGGGQSWSLPVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGTPS 60 Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140 PPN V++ LALF+TF++MSP +D+ QP N+I+ A+ R A+P FM T Sbjct: 61 APPNQVLLGLALFLTFFIMSPVIDKIYSDAYQPFTENKISMEVALDRGAQPLREFMLRQT 120 Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200 RE DL+LF +A++ I + + RIL+P+++ SEL+ +F+IGF + +PFLIID+ Sbjct: 121 READLALFAKLANT----QPIQGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDL 176 Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +VA+++MA+GMMM+PP SI+LPFK++ FVL+DGW LLV +L +SF Sbjct: 177 VVASVLMALGMMMVPPASIALPFKLMLFVLVDGWQLLVGSLAQSF 221 >gi|160880831|ref|YP_001559799.1| flagellar biosynthetic protein FliP [Clostridium phytofermentans ISDg] gi|160429497|gb|ABX43060.1| flagellar biosynthetic protein FliP [Clostridium phytofermentans ISDg] Length = 281 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 94/219 (42%), Positives = 144/219 (65%), Gaps = 4/219 (1%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 N + ++ I T++++AP +LIM+T F R I+V +R+ +G + PPN V Sbjct: 66 FNSGDGTGSLSATLKMLLILTLITLAPSILIMLTSFIRIIVVLHFVRSALGTQTTPPNQV 125 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 +I LALF+T ++MSP + +QPL +IT+ A + EP FM + T EKD+ Sbjct: 126 LIGLALFLTLFIMSPIITNINTNAVQPLSKGEITQEQAFTQGMEPLRDFMFDQTNEKDMQ 185 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 LF+D+A T++ + LIP+F+ISELR +F IGFLI +PFLIIDM+VA+ + Sbjct: 186 LFLDIAGV----TEVNDRADVPSTALIPAFIISELRAAFIIGFLIYIPFLIIDMVVASTL 241 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+MGMMMLPPT+IS+PFK++ F++ DGW+L++ +++KSF Sbjct: 242 MSMGMMMLPPTTISMPFKILLFIMADGWNLIIGSVIKSF 280 >gi|258404717|ref|YP_003197459.1| flagellar biosynthetic protein FliP [Desulfohalobium retbaense DSM 5692] gi|257796944|gb|ACV67881.1| flagellar biosynthetic protein FliP [Desulfohalobium retbaense DSM 5692] Length = 252 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 103/237 (43%), Positives = 154/237 (64%), Gaps = 4/237 (1%) Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIV 68 L L F L ++ D ++ + T+LS+AP +L+M T F R +IV Sbjct: 19 LLLPQAGWGFEIPRLTLGVDGTNDPDQVATGIQILFLLTVLSLAPAILLMTTSFIRIVIV 78 Query: 69 FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128 S +R MG+ +PPN VII LALF+TF++MSP L + + +QP ++ +I + AI+R Sbjct: 79 LSFIRQAMGVRQMPPNQVIIGLALFLTFFIMSPVLSQMNQDALQPYLDQEIGDAQAIERA 138 Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188 P FM N R+KDL LF+D++ S T + I +L+P+FM+SE++R+F+IG Sbjct: 139 VSPMREFMFNQVRQKDLQLFVDISGSDQPET----REEIRTMLLVPAFMLSEIKRAFQIG 194 Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 FLI +PFL+IDM+ A+++M+MGM+MLPP ISLPFK++ FVL+DGW L+V +LV+SF Sbjct: 195 FLIFVPFLVIDMVTASVLMSMGMLMLPPVIISLPFKILLFVLVDGWHLVVGSLVRSF 251 >gi|242238991|ref|YP_002987172.1| flagellar biosynthetic protein FliP [Dickeya dadantii Ech703] gi|242131048|gb|ACS85350.1| flagellar biosynthetic protein FliP [Dickeya dadantii Ech703] Length = 254 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 101/247 (40%), Positives = 162/247 (65%), Gaps = 7/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 ++R FF + +V + + L +++ P +W V+T + T L+ P +L+M Sbjct: 11 LVRRSFFTILIVFFAP-NSWAQLPGIISQPLANGAQSWSLPVQTLVLLTSLTFIPAVLLM 69 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIV +LR+ +G + PPN ++I L+LF+TF++MSP L + + QP N+ Sbjct: 70 MTSFTRIIIVLGLLRSALGTPTAPPNQILIGLSLFLTFFIMSPVLTKVYQDAYQPFSENK 129 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I TAI+R ++P FM TRE DL+LF +A S ++ + + R+L+P+F+ Sbjct: 130 INMETAIERGSQPLRQFMLRQTRETDLALFARLAEIS----ALSGPEAVPMRVLVPAFVT 185 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF I +PFLIID++VA+++MA+GMMM+PP ++SLPFK++ FVL+DGW LL+ Sbjct: 186 SELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGWQLLL 245 Query: 239 ENLVKSF 245 +LV+SF Sbjct: 246 SSLVQSF 252 >gi|163789635|ref|ZP_02184073.1| flagellar biosynthesis protein P [Carnobacterium sp. AT7] gi|159875167|gb|EDP69233.1| flagellar biosynthesis protein P [Carnobacterium sp. AT7] Length = 254 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 148/245 (60%), Gaps = 8/245 (3%) Query: 5 CFFALFLVTPELVFAKSSLHDVMNI----PADLSISTWIVRTFGIFTILSIAPILLIMVT 60 F F++ P++ A + I ++ +V+ F + T LS+AP L++ T Sbjct: 13 LFLTSFVLFPQVASAAELTDGLDGITDLFGKQSGGTSEVVQLFLLTTALSLAPTFLVLTT 72 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 CF R I+V S +R+ +G PPNLV++ +ALF++ ++M P ++ I P +N +I+ Sbjct: 73 CFTRIIVVLSFVRSSLGTQQNPPNLVLMGIALFLSLFIMQPVYTDVMDEAITPYINEEIS 132 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A + P FM TR++D+ LF+D++ + + + + IP+F+ISE Sbjct: 133 GIEAFELAELPIKEFMYKQTRDEDIQLFLDISKTEKP----ADVNDLPLTVAIPAFIISE 188 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 LR +F IGFLI +PFL+ID++VA+I+M+MGM ML P ISLPFK++ FVL+DGW L+VE+ Sbjct: 189 LRTAFTIGFLIFIPFLVIDIVVASILMSMGMFMLSPVMISLPFKLLLFVLVDGWYLVVES 248 Query: 241 LVKSF 245 LV F Sbjct: 249 LVTGF 253 >gi|239826628|ref|YP_002949252.1| flagellar biosynthesis protein FliP [Geobacillus sp. WCH70] gi|239806921|gb|ACS23986.1| flagellar biosynthetic protein FliP [Geobacillus sp. WCH70] Length = 222 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 95/209 (45%), Positives = 146/209 (69%), Gaps = 4/209 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + V+ + T+LSIAP +LIM+TCF R +IV S +RT +G +PPN V++ LALF+TF Sbjct: 17 SMSVKLLLLLTVLSIAPGILIMMTCFTRIVIVLSFVRTSLGTQQMPPNQVLVGLALFLTF 76 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 ++M+PT + +QPL + +I+ A +R + P FM +TR+KDL+LF+ + + Sbjct: 77 FIMAPTFKEINDQALQPLFSEKISLEQAYERASVPIKEFMSKHTRQKDLALFLSYSGAEK 136 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 I L+P+F ISE++ +F++GF+I +PFL+IDMIVA+++M+MGMMMLPP Sbjct: 137 PK----SVQDIPLTTLVPAFAISEIKTAFQMGFMIFIPFLVIDMIVASVLMSMGMMMLPP 192 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLPFK++ FVL+DGW L+V++L++SF Sbjct: 193 VMISLPFKILLFVLVDGWYLVVKSLLESF 221 >gi|260752858|ref|YP_003225751.1| flagellar biosynthesis protein FliP [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552221|gb|ACV75167.1| flagellar biosynthetic protein FliP [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 316 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 87/194 (44%), Positives = 121/194 (62%), Gaps = 4/194 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +++M+T F R IIV S+LR +G+ PPN V+I LALF++ +VM P LD+ Sbjct: 126 PSIILMMTSFTRIIIVLSLLRQAIGLQQTPPNQVLIGLALFLSLFVMRPVLDQINTTAFS 185 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P +I AI R FM TR+ DL LF D+AH + I + +L Sbjct: 186 PYGRGEIQIEEAIMRSGTALHGFMTKQTRKNDLQLFTDLAHHPRYE----NAESIPFTVL 241 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 +PSF+ SEL+ +FEIGFLI LPF+IID++VA + A+GMMML P IS PFK++ F+++D Sbjct: 242 VPSFVTSELKTAFEIGFLIFLPFIIIDIVVACTLTALGMMMLSPQIISAPFKLLLFIMVD 301 Query: 233 GWSLLVENLVKSFI 246 GW+L V +L SFI Sbjct: 302 GWALTVGSLAGSFI 315 >gi|319764505|ref|YP_004128442.1| flagellar biosynthetic protein flip [Alicycliphilus denitrificans BC] gi|317119066|gb|ADV01555.1| flagellar biosynthetic protein FliP [Alicycliphilus denitrificans BC] Length = 251 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 89/241 (36%), Positives = 141/241 (58%), Gaps = 4/241 (1%) Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64 C + +L V+ A + + ++T FT LS P +L+M+T F R Sbjct: 13 CLLIAGAALGQQQGGAGTLPLVVGSGAGGTSYSVPIQTLLFFTALSFLPAVLLMMTGFTR 72 Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124 +IV S+LR +G PPN V++ L+LF+T +VM PTLD+ + P N ++ A Sbjct: 73 IVIVLSLLRQAIGTQQAPPNQVVVGLSLFLTLFVMGPTLDKVYQEAYVPYTTNALSFEQA 132 Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184 + + P FM TR+ D +LF +A T + R+L+P+F+ SEL+ + Sbjct: 133 LAKAEAPMRGFMLKQTRQSDFTLFARLAKLDEGVT----AETAPLRVLVPAFVTSELKTA 188 Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 F+IGF++ +PFLIIDM+V++++M++GMMML P ++LPFK++ FVL DGW+LL+ +L S Sbjct: 189 FQIGFMVFIPFLIIDMVVSSVLMSLGMMMLSPVLVALPFKLMLFVLADGWNLLIGSLAAS 248 Query: 245 F 245 F Sbjct: 249 F 249 >gi|162210056|ref|YP_331659.2| flagellar biosynthesis protein FliP [Burkholderia pseudomallei 1710b] Length = 253 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 97/241 (40%), Positives = 146/241 (60%), Gaps = 6/241 (2%) Query: 7 FALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPR 64 + L + L + P +T+ V+T + T+LS P +L+M+T F R Sbjct: 16 ILIGLAPALACAQAAGLPAFNSAPGSNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTR 75 Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124 IIV S+LR +G S PPN V++ LALF+T +VMSP LDR+ +P + A Sbjct: 76 IIIVLSLLRQAIGTASTPPNQVLVGLALFLTLFVMSPVLDRAYNDAYKPFSEGTLQMDQA 135 Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184 +QR PF FM TRE DL+LF ++ + + + + +L+P+F+ SEL+ Sbjct: 136 VQRGTAPFKAFMLKQTRETDLALFAKIS----KAAPMQGPEDVPLSLLVPAFVTSELKTG 191 Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 F+IGF I +PFLIIDM+VA+++M+MGMMM+ P ++SLPFK++ FVL+DGW LL+ +L +S Sbjct: 192 FQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATVSLPFKLMLFVLVDGWQLLIGSLAQS 251 Query: 245 F 245 F Sbjct: 252 F 252 >gi|241761180|ref|ZP_04759269.1| flagellar biosynthetic protein FliP [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374799|gb|EER64260.1| flagellar biosynthetic protein FliP [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 316 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 87/194 (44%), Positives = 121/194 (62%), Gaps = 4/194 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +++M+T F R IIV S+LR +G+ PPN V+I LALF++ +VM P LD+ Sbjct: 126 PSIILMMTSFTRIIIVLSLLRQAIGLQQTPPNQVLIGLALFLSLFVMRPVLDQINTTAFS 185 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P +I AI R FM TR+ DL LF D+AH + I + +L Sbjct: 186 PYGRGEIQIEEAIMRSGTALHGFMTKQTRKNDLQLFTDLAHHPRYE----NAESIPFTVL 241 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 +PSF+ SEL+ +FEIGFLI LPF+IID++VA + A+GMMML P IS PFK++ F+++D Sbjct: 242 VPSFVTSELKTAFEIGFLIFLPFIIIDIVVACTLTALGMMMLSPQIISAPFKLLLFIMVD 301 Query: 233 GWSLLVENLVKSFI 246 GW+L V +L SFI Sbjct: 302 GWALTVGSLAGSFI 315 >gi|269965693|ref|ZP_06179806.1| Flagellar biosynthetic protein fliP [Vibrio alginolyticus 40B] gi|269829761|gb|EEZ83997.1| Flagellar biosynthetic protein fliP [Vibrio alginolyticus 40B] Length = 289 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 90/219 (41%), Positives = 135/219 (61%), Gaps = 5/219 (2%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 P + ++ + T+L P ++I++T F R ++V SILR MG+ P N V Sbjct: 74 TTNPDGSEDYSVTLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 133 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 II +ALF+TF+VMSP L+ + +QP +N Q+T A P FM TR KDL Sbjct: 134 IIGIALFLTFFVMSPVLNEINDKAVQPYLNEQVTAREAFDAAQAPMKAFMLKQTRIKDLE 193 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 F+ M+ + + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++ Sbjct: 194 TFVTMSG-----EQVEDPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 248 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 249 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287 >gi|317151987|ref|YP_004120035.1| flagellar biosynthetic protein FliP [Desulfovibrio aespoeensis Aspo-2] gi|316942238|gb|ADU61289.1| flagellar biosynthetic protein FliP [Desulfovibrio aespoeensis Aspo-2] Length = 256 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 98/246 (39%), Positives = 144/246 (58%), Gaps = 9/246 (3%) Query: 5 CFFALFLVTPELVFAKSSLHDVMNI-----PADLSISTWIVRTFGIFTILSIAPILLIMV 59 C F + P L A+ + + + A+ + ++ + T+LS+AP +++ + Sbjct: 14 CLFGALALFPALSLAQDPVIPKLTMELAAGQAEPGEVSTLLEILFLLTVLSMAPAIMLTM 73 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R IIVF LR MG +PPN ++ LA+FMT +M P +QP + +I Sbjct: 74 TSFTRIIIVFHFLRQAMGTQQMPPNQILAGLAIFMTVVIMMPVGKAINSTALQPYLAEEI 133 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 A++R P FM +TREKDLS+F + N D + +L+ ++ IS Sbjct: 134 RFDEALERAQVPIREFMFKHTREKDLSIFYSITKEERPN----NRDEVNTIMLVAAYTIS 189 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+ F IGFLI +PFLI+DM+VA+I++AMGMMMLPP ISLPFK++ FVLIDGW+LLV Sbjct: 190 ELKTGFTIGFLIYIPFLILDMVVASILLAMGMMMLPPVMISLPFKILLFVLIDGWNLLVG 249 Query: 240 NLVKSF 245 +LV +F Sbjct: 250 SLVNTF 255 >gi|126175118|ref|YP_001051267.1| flagellar biosynthesis protein FliP [Shewanella baltica OS155] gi|153001442|ref|YP_001367123.1| flagellar biosynthesis protein FliP [Shewanella baltica OS185] gi|125998323|gb|ABN62398.1| flagellar biosynthetic protein FliP [Shewanella baltica OS155] gi|151366060|gb|ABS09060.1| flagellar biosynthetic protein FliP [Shewanella baltica OS185] Length = 248 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 94/247 (38%), Positives = 145/247 (58%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIM 58 ++ + L P A L V + + V + + T LS P +LIM Sbjct: 5 ILALVGLVILLCMPSAWAADGVLPAVTVTTGPDGSTEYSVTMQILLLMTSLSFLPAMLIM 64 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIV SILR +G+ P N V+I ++LFMTF++M+P DR + G++P + Q Sbjct: 65 LTSFTRIIIVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDRIYDEGVKPYIEEQ 124 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 +T A ++ EP FM R DL F++++ +I + +LIP+F+ Sbjct: 125 LTLQQAFEKGKEPLKGFMLGQVRTTDLKTFIEISGYK----NIKSPEEAPMSVLIPAFIT 180 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK++ FVL+DGWSL++ Sbjct: 181 SELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVL 240 Query: 239 ENLVKSF 245 L SF Sbjct: 241 GTLANSF 247 >gi|292493587|ref|YP_003529026.1| flagellar biosynthetic protein FliP [Nitrosococcus halophilus Nc4] gi|291582182|gb|ADE16639.1| flagellar biosynthetic protein FliP [Nitrosococcus halophilus Nc4] Length = 269 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 94/231 (40%), Positives = 144/231 (62%), Gaps = 4/231 (1%) Query: 15 ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74 L V + T ++ G+ T L++ P ++M+T F R I+V SILR Sbjct: 39 GLAAPGVPALAVTTEGSGEQTYTVTLQILGLMTALTLLPAAVMMMTSFTRIIVVLSILRQ 98 Query: 75 GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134 +G+ P + ++I L LF+TF++M P LD++ + G++P + +I+ T A+ R EPF Sbjct: 99 ALGLAQTPSSQILIGLTLFLTFFIMGPVLDKAYQEGVRPYLQEEISVTEALVRTREPFRH 158 Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194 FM TRE DL LF ++A + + + +L+P+F+ SEL+ +F+IGFL+ +P Sbjct: 159 FMMAQTRETDLQLFAEIAGQKAFESPAQ----VPFSLLVPAFITSELKTAFQIGFLLFIP 214 Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 FLIID++VA+++MAMGMMML P +SLPFK++ FVLIDGWSLL+ L SF Sbjct: 215 FLIIDLVVASVLMAMGMMMLSPMLVSLPFKLLLFVLIDGWSLLMGTLASSF 265 >gi|218658525|ref|ZP_03514455.1| flagellar biosynthesis protein FliP [Rhizobium etli IE4771] Length = 238 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 139/206 (67%), Positives = 177/206 (85%), Gaps = 2/206 (0%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 +RTFG+ TILS+AP +LIMVT FPRF+I FSILR+GMG+ S P N++++SL+LFMTFYVM Sbjct: 34 IRTFGLLTILSVAPGILIMVTSFPRFVIAFSILRSGMGLSSTPSNMILLSLSLFMTFYVM 93 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SPT D++ + G+QPL+ NQI ET A+QR+AEPF FM NTR+KDL+LF+D+A R Sbjct: 94 SPTFDQAWQSGVQPLLANQINETEAVQRIAEPFRTFMAANTRDKDLALFVDLAR--ERGQ 151 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 +I +D I+YR+LIP+FMISE+RR FEIGFL++LPFL+ID+IVATI MAMGMMMLPPTSI Sbjct: 152 NIQTSDPIDYRVLIPAFMISEIRRGFEIGFLVVLPFLVIDLIVATITMAMGMMMLPPTSI 211 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++FFVLIDGW+LLV +LV+SF Sbjct: 212 SLPFKILFFVLIDGWNLLVGSLVRSF 237 >gi|189426339|ref|YP_001953516.1| flagellar biosynthesis protein FliP [Geobacter lovleyi SZ] gi|189422598|gb|ACD96996.1| flagellar biosynthetic protein FliP [Geobacter lovleyi SZ] Length = 256 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 94/224 (41%), Positives = 145/224 (64%), Gaps = 4/224 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 SL+ + + ++ F + T+LS+AP LLIM T F R ++V S LRT +G Sbjct: 36 SLNIGVGTATKPAEVATTIQIFLLLTVLSLAPSLLIMTTSFTRIVVVLSFLRTALGTQQA 95 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 P N +I++L+LF+TF++M+P + QP +++ A ++ +P FM + TR Sbjct: 96 PSNQIILALSLFLTFFIMTPVWQQVNRDAYQPYKAGTLSQEQAFEKAVQPVRKFMLSQTR 155 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 EKDL LF+ ++ + D I ++P+FMISELR +F+IGFLI +PF+++DM+ Sbjct: 156 EKDLGLFVSLSKQARPK----NADDIPTLTIVPAFMISELRTAFQIGFLIYIPFIVVDMV 211 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 VA+++M+MGMMMLPP ISLPFK++ FVL+DGW L++ +LVKSF Sbjct: 212 VASVLMSMGMMMLPPVMISLPFKILLFVLVDGWGLVISSLVKSF 255 >gi|260886649|ref|ZP_05897912.1| flagellar biosynthetic protein FliP [Selenomonas sputigena ATCC 35185] gi|260863792|gb|EEX78292.1| flagellar biosynthetic protein FliP [Selenomonas sputigena ATCC 35185] Length = 251 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 95/224 (42%), Positives = 143/224 (63%), Gaps = 4/224 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 SL + A ++ + TILS+ P +L+M T F R ++V LR M +V Sbjct: 31 SLSVNVGEAAGPQDVATSLQILALLTILSLVPSILVMTTSFVRIVVVIGFLRNAMSTQNV 90 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PPN V+++L+LF+TFY+M P + + GIQP + QIT+ AI P FM TR Sbjct: 91 PPNQVVLALSLFLTFYIMQPYWSEANQQGIQPYLAGQITQEQAIDNTLAPLREFMFRQTR 150 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 E DL+LF++++ + + + LIP+F+ISEL+ +F+IGF+I +PF++IDMI Sbjct: 151 ESDLALFVNLSDAERPESQA----DVSTATLIPAFVISELKTAFQIGFMIYIPFIVIDMI 206 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 VA+ +M+MGMMMLPP ISLPFK++ FV++DGW LL+++L+ SF Sbjct: 207 VASTLMSMGMMMLPPVMISLPFKILLFVMVDGWHLLIKSLIMSF 250 >gi|254228442|ref|ZP_04921868.1| flagellar biosynthetic protein FliP, putative [Vibrio sp. Ex25] gi|262393598|ref|YP_003285452.1| flagellar biosynthesis protein FliP [Vibrio sp. Ex25] gi|151939030|gb|EDN57862.1| flagellar biosynthetic protein FliP, putative [Vibrio sp. Ex25] gi|262337192|gb|ACY50987.1| flagellar biosynthesis protein FliP [Vibrio sp. Ex25] Length = 289 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 90/219 (41%), Positives = 135/219 (61%), Gaps = 5/219 (2%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 P + ++ + T+L P ++I++T F R ++V SILR MG+ P N V Sbjct: 74 TTNPDGSEDYSVTLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 133 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 II +ALF+TF+VMSP L+ + +QP +N Q+T A P FM TR KDL Sbjct: 134 IIGIALFLTFFVMSPVLNEINDKAVQPYLNEQVTAREAFDAAQAPMKAFMLKQTRIKDLE 193 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 F+ M+ + + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++ Sbjct: 194 TFVTMSG-----EQVENPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 248 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 249 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287 >gi|300311365|ref|YP_003775457.1| flagellar biosynthetic protein FliP [Herbaspirillum seropedicae SmR1] gi|300074150|gb|ADJ63549.1| flagellar biosynthetic protein FliP precursor protein [Herbaspirillum seropedicae SmR1] Length = 244 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 96/228 (42%), Positives = 147/228 (64%), Gaps = 6/228 (2%) Query: 20 KSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMG 77 + + + ++PA + + ++T + T LS P L+M+TCF R +IV S+LR +G Sbjct: 20 QQGIPALNSMPAPGGGTNYSLPIQTMLLLTSLSFLPAALLMMTCFTRIVIVLSLLRQALG 79 Query: 78 MGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMR 137 S PP V++ L+LF+TF+VMSP DR QP N+I A+ + A+P FM Sbjct: 80 TQSTPPTQVLVGLSLFLTFFVMSPVFDRIYTDAYQPFAENKIQMMEALDKGAQPLKEFML 139 Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197 TRE DL+L++ ++ R + + + R+L+P+F+ SEL+ +F+IGF I LPFLI Sbjct: 140 KQTRESDLALYVKLS----RGPALQGPEDVPLRLLVPAFVTSELKTAFQIGFAIFLPFLI 195 Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IDM+VA+I+M+MGMMM+ P +SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 196 IDMVVASILMSMGMMMMSPALVSLPFKLMLFVLVDGWQLLIGSLAQSF 243 >gi|323705431|ref|ZP_08117006.1| flagellar biosynthetic protein FliP [Thermoanaerobacterium xylanolyticum LX-11] gi|323535333|gb|EGB25109.1| flagellar biosynthetic protein FliP [Thermoanaerobacterium xylanolyticum LX-11] Length = 249 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 97/245 (39%), Positives = 157/245 (64%), Gaps = 8/245 (3%) Query: 4 YCFFALFLVTPELVFAK---SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 + L ++ + +A +S +N P+ + ++ + T+L++AP +LIM+T Sbjct: 9 WLVLVLPILLTQNAYAAPNNASSLITVNAPSTSNEVASSIQIVLLLTVLTLAPSILIMMT 68 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R I+V S LR +G+ +PPN V+I LALF+TF++M+P + + IQP M +IT Sbjct: 69 SFTRIIVVLSFLRNALGLQQMPPNQVLIGLALFLTFFIMAPVGSQINKDSIQPYMQGKIT 128 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A + +P FM TR+ DL+LF++++ + + + R++IPSF+ISE Sbjct: 129 PQEAYVKARDPLKNFMLKQTRKNDLNLFINLSKLK-----VKSVNDVPLRVVIPSFIISE 183 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +FEIGF+I +PFLIIDM+VA+++M+MGM MLPP ISLPFK++ F+L+DGW++L ++ Sbjct: 184 LKTAFEIGFIIYIPFLIIDMVVASVLMSMGMFMLPPVLISLPFKLLLFILVDGWNILAKS 243 Query: 241 LVKSF 245 LV F Sbjct: 244 LVIGF 248 >gi|270262391|ref|ZP_06190662.1| flagellar biosynthetic protein FliP [Serratia odorifera 4Rx13] gi|270043075|gb|EFA16168.1| flagellar biosynthetic protein FliP [Serratia odorifera 4Rx13] Length = 241 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 97/244 (39%), Positives = 155/244 (63%), Gaps = 9/244 (3%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTC 61 + L LV+P A + L +++ P +W V+T + T LS P +L+M+T Sbjct: 3 WLAATLLLVSPA---ALAQLPGLISQPLADGGQSWSLPVQTLVLLTSLSFLPAMLLMMTS 59 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F R IIV +LR +G S PPN V++ LALF+TF++MSP D+ + P ++I+ Sbjct: 60 FTRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISL 119 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 A+ + ++P FM TRE DL+L+ +A+ + + + RIL+P+++ SEL Sbjct: 120 DAALDKGSQPLREFMLRQTRETDLALYARLANQP----PLAGPEAVPMRILLPAYVTSEL 175 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 + +F+IGF + +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L Sbjct: 176 KTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSL 235 Query: 242 VKSF 245 +SF Sbjct: 236 AQSF 239 >gi|332140592|ref|YP_004426330.1| flagellar biosynthesis protein FliP [Alteromonas macleodii str. 'Deep ecotype'] gi|327550614|gb|AEA97332.1| flagellar biosynthesis protein FliP [Alteromonas macleodii str. 'Deep ecotype'] Length = 251 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 92/233 (39%), Positives = 143/233 (61%), Gaps = 5/233 (2%) Query: 15 ELVFAKSSLHDVMNIPADLSIS--TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72 E V+A+ + V T ++ I T LS+ P ++M+T F R I+V SIL Sbjct: 18 EPVYAQQGISAVTVTTNQDGSQDYTMTLQALFIMTALSLIPAFIMMMTSFTRIIVVLSIL 77 Query: 73 RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132 R +G+ P N ++I ++LF++ ++M+P + E +QP +N Q+T A+++ P Sbjct: 78 RQAIGLQQSPSNQILIGVSLFLSMFIMAPVFEEVNERALQPYLNEQLTSLDALEQAKGPM 137 Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192 FM + TR KDL F+ +A + D D + ILIP+F+ SEL+ +F+IGF++ Sbjct: 138 RAFMLSQTRVKDLETFVRIAGDEGKYAD---TDEVPLTILIPAFVTSELKTAFQIGFMLF 194 Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PFLIID++VA+I+MAMGMMML P +SLPFK++ FVL+DGW+L+ L SF Sbjct: 195 IPFLIIDLVVASILMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLIFGTLATSF 247 >gi|307264883|ref|ZP_07546445.1| flagellar biosynthetic protein FliP [Thermoanaerobacter wiegelii Rt8.B1] gi|326389467|ref|ZP_08211034.1| flagellar biosynthetic protein FliP [Thermoanaerobacter ethanolicus JW 200] gi|306920141|gb|EFN50353.1| flagellar biosynthetic protein FliP [Thermoanaerobacter wiegelii Rt8.B1] gi|325994472|gb|EGD52897.1| flagellar biosynthetic protein FliP [Thermoanaerobacter ethanolicus JW 200] Length = 221 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 94/223 (42%), Positives = 145/223 (65%), Gaps = 5/223 (2%) Query: 23 LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82 L D ++ S ++ + T+L++AP +LIM+T F R ++V S LR +G+ +P Sbjct: 3 LGDWVSSVTAPSNIATSLQIVLLLTVLTLAPSILIMMTSFTRIVVVLSFLRNALGLQQMP 62 Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142 PN V+I LALF+T Y+M+P I+P +IT+ A Q +P FM TR+ Sbjct: 63 PNQVLIGLALFLTLYIMAPVGQDINNNAIKPYTEGKITQEEAYQNAIKPLKNFMLKQTRQ 122 Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202 DL+LF+ +A + + + R++IPSF+ISEL+ +FEIGF+I +PFLIID++V Sbjct: 123 SDLNLFVSLAKIK-----VNNAEDLPMRVVIPSFIISELKTAFEIGFIIYIPFLIIDIVV 177 Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 A+++M+MGM MLPP ISLPFKV+ F+L+DGW+L+V++L+ F Sbjct: 178 ASVLMSMGMFMLPPVLISLPFKVLLFILVDGWNLVVKSLILGF 220 >gi|295696128|ref|YP_003589366.1| flagellar biosynthetic protein FliP [Bacillus tusciae DSM 2912] gi|295411730|gb|ADG06222.1| flagellar biosynthetic protein FliP [Bacillus tusciae DSM 2912] Length = 264 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 94/225 (41%), Positives = 149/225 (66%), Gaps = 4/225 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 L + + ++ + T+LS+AP +L+M+T F R I+V S +R+ + + Sbjct: 44 GLPSTLQPDSSPQGVAGTLQLILLITVLSLAPGILVMITSFTRMIVVLSFVRSALAVQQT 103 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PPN V+I LAL +TF+VM+PTL + + +QP + ++T+T AI R PF FM TR Sbjct: 104 PPNQVLIGLALALTFFVMAPTLSQVNQQAVQPYLRGELTQTQAIARAEVPFKHFMAKQTR 163 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 EKDL LF+D + + + + + I +L+P++ ISEL+ +FEIGF+I +PFLIIDM+ Sbjct: 164 EKDLQLFLDYRNVALPD----RVEDIPMSLLVPAYTISELKTAFEIGFMIFIPFLIIDMV 219 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +++++MAMGMMMLPP +SLPFK++ FVL DGW L+V++L+ ++ Sbjct: 220 ISSVLMAMGMMMLPPVIVSLPFKILLFVLADGWYLIVKSLLAGYV 264 >gi|322382378|ref|ZP_08056285.1| flagellar biosynthesis protein FliP [Paenibacillus larvae subsp. larvae B-3650] gi|321153731|gb|EFX46106.1| flagellar biosynthesis protein FliP [Paenibacillus larvae subsp. larvae B-3650] Length = 255 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 92/221 (41%), Positives = 150/221 (67%), Gaps = 4/221 (1%) Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84 D+ ++ ++ V + T+LS+AP LI++T F R +IV +RT +G +PPN Sbjct: 37 DIKVGGDSVNGASSTVTILLLLTVLSLAPAFLILMTSFTRIVIVLGFVRTSLGTQQMPPN 96 Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144 V++ LALF+T ++M+PTL ++ +QP + ++ +T A+++ AEP FM ++TR KD Sbjct: 97 QVLVGLALFLTLFIMAPTLGDINQVAVQPYIKGELNQTQALEKAAEPIKKFMWSHTRPKD 156 Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204 L LF+D +++ N + L+P+F ISEL+ +F++GF+I +PFL+IDMI+++ Sbjct: 157 LQLFLDYSNAEKPN----GPEDTPIAALVPAFAISELKTAFQMGFMIFIPFLVIDMIISS 212 Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MAMGMMMLPP ISLPFK++ FVL+DGW L+V++L+ S+ Sbjct: 213 TLMAMGMMMLPPVMISLPFKILLFVLVDGWYLVVKSLLVSY 253 >gi|260772332|ref|ZP_05881248.1| flagellar biosynthesis protein FliP [Vibrio metschnikovii CIP 69.14] gi|260611471|gb|EEX36674.1| flagellar biosynthesis protein FliP [Vibrio metschnikovii CIP 69.14] Length = 299 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 90/219 (41%), Positives = 140/219 (63%), Gaps = 5/219 (2%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 + ++ + T+L P ++I++T F R ++V SILR MG+ P N V Sbjct: 84 TTNADGGEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 143 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 II +A+F+TF++MSP L++ + +QP +N QI+ A +P FM TR KDL Sbjct: 144 IIGIAIFLTFFIMSPVLNQINDQAVQPYLNEQISARQAFDLAQDPMKSFMLKQTRLKDLE 203 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 F+++A S+ +N + + ILIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++ Sbjct: 204 TFVNIAGSNAQN-----PEDVSMAILIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 258 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 259 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297 >gi|91223555|ref|ZP_01258820.1| flagellar biosynthesis protein P [Vibrio alginolyticus 12G01] gi|91191641|gb|EAS77905.1| flagellar biosynthesis protein P [Vibrio alginolyticus 12G01] Length = 289 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 90/219 (41%), Positives = 135/219 (61%), Gaps = 5/219 (2%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 P + ++ + T+L P ++I++T F R ++V SILR MG+ P N V Sbjct: 74 TTNPDGSEDYSVTLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 133 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 II +ALF+TF+VMSP L+ + +QP +N Q+T A P FM TR KDL Sbjct: 134 IIGIALFLTFFVMSPVLNEINDKAVQPYLNEQVTAREAFDAAQAPMKAFMLKQTRIKDLE 193 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 F+ M+ + + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++ Sbjct: 194 TFVTMSG-----EQVENPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 248 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 249 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287 >gi|32266191|ref|NP_860223.1| flagellar biosynthesis protein FliP [Helicobacter hepaticus ATCC 51449] gi|32262241|gb|AAP77289.1| flagellar basal body protein FliP [Helicobacter hepaticus ATCC 51449] Length = 265 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 98/224 (43%), Positives = 147/224 (65%), Gaps = 4/224 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 S+ + P + + + I T+L IAP L++++T F R +IVF+ LRT +G Sbjct: 45 SVDLSLTAPKEPTELVATLNIVLIITLLVIAPSLVLVMTSFTRIVIVFAFLRTALGTQQS 104 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PP V++SLAL +TF++M P +S E+GI+P +I+ A +R PF FM NTR Sbjct: 105 PPTQVLVSLALILTFFIMEPVATKSYEVGIKPYAEKKISYDEAFERAIVPFKDFMIKNTR 164 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 EKDL+LF + + + + +L+P+FMISEL+ +F IGFL+ LPFL+IDM+ Sbjct: 165 EKDLALFFRIRQLENP----QSVNDVPLTVLLPAFMISELKTAFWIGFLLYLPFLVIDMV 220 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +++++MAMGMMMLPP ISLPFK++ F+L+DGW+LL+ NLV+ F Sbjct: 221 ISSVLMAMGMMMLPPVMISLPFKILVFILVDGWNLLIGNLVQGF 264 >gi|170722844|ref|YP_001750532.1| flagellar biosynthesis protein FliP [Pseudomonas putida W619] gi|169760847|gb|ACA74163.1| flagellar biosynthetic protein FliP [Pseudomonas putida W619] Length = 255 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 97/220 (44%), Positives = 140/220 (63%), Gaps = 4/220 (1%) Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85 + N P + ++ I T LS P +I++T F R IIVFSILR +G+ P N Sbjct: 37 LSNGPDGQQEYSVSLQILLIMTALSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQ 96 Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145 V+ +ALF+T ++M+P DR + +QP + Q+T AI + P FM TR+ DL Sbjct: 97 VLTGMALFLTMFIMAPVFDRVNQDALQPYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDL 156 Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205 LFM ++ + TDI D + IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA++ Sbjct: 157 DLFMRLS----KRTDIAGPDQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASV 212 Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MAMGMMML P ISLPFK++ FVL+DGW+L++ L SF Sbjct: 213 LMAMGMMMLSPLIISLPFKIMLFVLVDGWALIMGTLAGSF 252 >gi|42524694|ref|NP_970074.1| flagellar biosynthesis protein FliP [Bdellovibrio bacteriovorus HD100] gi|39576904|emb|CAE78133.1| flagellar protein required for flagellar formation [Bdellovibrio bacteriovorus HD100] Length = 252 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 100/234 (42%), Positives = 150/234 (64%), Gaps = 7/234 (2%) Query: 15 ELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71 FA+ +L + + + V+ + T+L++AP +LIM+T F R IIV S Sbjct: 22 SSAFAQVTLPTMNLGFKTTDNPNEVVNAVKLIMVMTVLTLAPAILIMMTGFTRIIIVLSF 81 Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131 LR MG+ +PPN +++ LALF+TF+VM P + GIQP M I++ AI+R P Sbjct: 82 LRQAMGVQQMPPNQLLVGLALFLTFFVMQPAFNEMNTNGIQPYMAGTISQDQAIERTFAP 141 Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191 FM N TR+ DL+LF+ ++ T + +L+P+F++SEL+ +F+IGF+I Sbjct: 142 LRKFMFNQTRDSDLALFIKLSKVEKPKTRA----DVPTMVLVPAFVVSELKTAFQIGFII 197 Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LPFL+ID++ A+++MAMGMMMLPP ISLPFK++ FVL+DGW LL+ ++VKSF Sbjct: 198 FLPFLVIDIVAASVLMAMGMMMLPPVVISLPFKIMLFVLVDGWGLLIGSMVKSF 251 >gi|163849877|ref|YP_001637920.1| flagellar biosynthetic protein FliP [Methylobacterium extorquens PA1] gi|163661482|gb|ABY28849.1| flagellar biosynthetic protein FliP [Methylobacterium extorquens PA1] Length = 253 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 102/215 (47%), Positives = 152/215 (70%), Gaps = 4/215 (1%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 + ++ + T+L++AP +L+M T F R ++V SILR+ +G + PPN V++SL Sbjct: 41 GAGGTTERALQLVALITVLALAPSVLVMATSFTRIVVVLSILRSALGTQTAPPNTVMVSL 100 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 ALF+T +VM+PT + G++PLM QI+++ A +R + PF FM N REKDL LF+D Sbjct: 101 ALFLTAFVMAPTAREAYRTGVEPLMAGQISQSQAFERASAPFKTFMLRNVREKDLKLFLD 160 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 MA + I I+ P+FMISELRR+FEIGFL+ +PFLIID++VA+++MAMG Sbjct: 161 MARQPAP----AGPEAIGLEIVTPAFMISELRRAFEIGFLLFIPFLIIDLVVASVLMAMG 216 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMMLPP +++LPFK+IFFVL+DGW+L+ +L++S+ Sbjct: 217 MMMLPPATVALPFKLIFFVLVDGWTLVAGSLIQSY 251 >gi|332994111|gb|AEF04166.1| flagellar biosynthesis protein FliP [Alteromonas sp. SN2] Length = 252 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 92/244 (37%), Positives = 145/244 (59%), Gaps = 5/244 (2%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSIS--TWIVRTFGIFTILSIAPILLIMVTC 61 + V E A+ + V + D T ++ I T LS+ P ++M+T Sbjct: 8 FFVVLASWVIAEPALAQQGISAVTVVTNDDGSQDYTMTLQALFIMTALSLIPAFIMMMTS 67 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F R I+V SILR +G+ P N +++ ++LF++ ++M+P + E +QP ++ Q+T Sbjct: 68 FTRIIVVLSILRQAIGLQQSPSNQILVGVSLFLSMFIMAPVFEEINERALQPYLSEQMTS 127 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 AI++ P FM + TR KDL F+ +A + D D + ILIP+F+ SEL Sbjct: 128 LDAIEQAKGPMRAFMLSQTRVKDLETFVRIAGDEGKYAD---TDEVPLTILIPAFVTSEL 184 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 + +F+IGF++ +PFLIID++VA+I+MAMGMMML P +SLPFK++ FVL+DGW+L+ L Sbjct: 185 KTAFQIGFMLFIPFLIIDLVVASILMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLIFGTL 244 Query: 242 VKSF 245 SF Sbjct: 245 ATSF 248 >gi|56551543|ref|YP_162382.1| flagellar biosynthesis protein FliP [Zymomonas mobilis subsp. mobilis ZM4] gi|56543117|gb|AAV89271.1| flagellar biosynthetic protein FliP [Zymomonas mobilis subsp. mobilis ZM4] Length = 316 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 87/194 (44%), Positives = 121/194 (62%), Gaps = 4/194 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +++M+T F R IIV S+LR +G+ PPN V+I LALF++ +VM P LD+ Sbjct: 126 PSIILMMTSFTRIIIVLSLLRQAIGLQQTPPNQVLIGLALFLSLFVMRPVLDQINTTAFS 185 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P +I AI R FM TR+ DL LF D+AH + I + +L Sbjct: 186 PYGRGEIQIEEAIMRSGTALHGFMTKQTRKNDLQLFTDLAHHPRYE----NAESIPFTVL 241 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 +PSF+ SEL+ +FEIGFLI LPF+IID++VA + A+GMMML P IS PFK++ F+++D Sbjct: 242 VPSFVTSELKTAFEIGFLIFLPFIIIDIVVACTLTALGMMMLSPQIISAPFKLLLFIMVD 301 Query: 233 GWSLLVENLVKSFI 246 GW+L V +L SFI Sbjct: 302 GWALTVGSLAGSFI 315 >gi|256059603|ref|ZP_05449801.1| flagellar biosynthesis protein FliP [Brucella neotomae 5K33] gi|261323570|ref|ZP_05962767.1| flagellar biosynthetic protein FliP [Brucella neotomae 5K33] gi|261299550|gb|EEY03047.1| flagellar biosynthetic protein FliP [Brucella neotomae 5K33] Length = 246 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 131/240 (54%), Positives = 176/240 (73%), Gaps = 4/240 (1%) Query: 7 FALFLVTPELVFAKSSLHDVMNIPAD-LSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65 L L A+ +L +PA + S IV+ FG+ T+LSIAP LLIMVT F RF Sbjct: 9 VILTLALTVSAQAQQALPLDKLLPAGSGAASGQIVQLFGLLTVLSIAPGLLIMVTSFTRF 68 Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 I FS+LR+G+G+ + P ++V+ISLALFMTFYVM+PT DR+ G+QPLM N+IT+ A Sbjct: 69 AIAFSLLRSGLGLQTAPASMVMISLALFMTFYVMAPTFDRAWNNGVQPLMRNEITQEAAF 128 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185 +++PF FM R+KDL LF D+A S R +D +++R+L+P+FMISELRR F Sbjct: 129 GEISQPFREFMMAQVRDKDLRLFEDLADPSFRTSDDGI---VDFRVLVPAFMISELRRGF 185 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 EIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW++LV +L++SF Sbjct: 186 EIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245 >gi|225181595|ref|ZP_03735036.1| flagellar biosynthetic protein FliP [Dethiobacter alkaliphilus AHT 1] gi|225167703|gb|EEG76513.1| flagellar biosynthetic protein FliP [Dethiobacter alkaliphilus AHT 1] Length = 257 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 95/250 (38%), Positives = 155/250 (62%), Gaps = 11/250 (4%) Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFG------IFTILSIAPIL 55 + F L P + A+ L N+ D+ +T + G + T+L++ P Sbjct: 12 LSAVLFIGILFLPSRLGAEP-LPFPTNVNIDIGTATEPEQVVGSLQLLMLLTVLTLVPAF 70 Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115 L ++T F R ++V +R + PPN VII LALF+TF++M+P + E IQP + Sbjct: 71 LALMTSFTRIVVVLGFVRNALATQQTPPNQVIIGLALFLTFFIMAPIYTQVNETAIQPYL 130 Query: 116 NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPS 175 +IT+ A+ A+P FM + TREKDL+LF+++++ T D + +L+P+ Sbjct: 131 EEEITQEEALAIGAQPLREFMFHQTREKDLALFVNISNGERPET----RDDVPMHVLVPA 186 Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235 F+ISEL+ +F++GF++ +PF+IIDM+VA+ +M+MGM MLPP +SLPFK++ FV++DGW Sbjct: 187 FVISELKTAFQMGFMLFIPFVIIDMVVASTLMSMGMFMLPPVMVSLPFKLLLFVMVDGWH 246 Query: 236 LLVENLVKSF 245 L+V++LV+SF Sbjct: 247 LVVKSLVESF 256 >gi|118581840|ref|YP_903090.1| flagellar biosynthesis protein FliP [Pelobacter propionicus DSM 2379] gi|118504550|gb|ABL01033.1| flagellar biosynthetic protein FliP [Pelobacter propionicus DSM 2379] Length = 257 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 103/224 (45%), Positives = 145/224 (64%), Gaps = 4/224 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 SL + T ++ F + TILS+AP LLIM T F R ++V S LRT MG Sbjct: 37 SLSIGVGTATKPGEFTTTIQIFFLLTILSLAPGLLIMTTAFTRIVVVLSFLRTAMGTQGA 96 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 P N VI+ L++F+TF++MSP + QP QI++T AI R P FM + TR Sbjct: 97 PSNQVILGLSMFLTFFIMSPVWQQINNEAYQPWKAQQISQTIAIDRAIMPVRRFMLSQTR 156 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 EKDL+LF+ +++ + I +IP+FMISELR +F+IGFLI +PF+++DM+ Sbjct: 157 EKDLALFVSLSNLPRPK----NANDIPTLTIIPAFMISELRTAFQIGFLIYIPFIVVDMV 212 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 VA+++M+MGMMMLPP ISLPFK++ FVL+DGW L++ +LVKSF Sbjct: 213 VASVLMSMGMMMLPPVMISLPFKILLFVLVDGWGLVISSLVKSF 256 >gi|304409949|ref|ZP_07391568.1| flagellar biosynthetic protein FliP [Shewanella baltica OS183] gi|307302338|ref|ZP_07582096.1| flagellar biosynthetic protein FliP [Shewanella baltica BA175] gi|304351358|gb|EFM15757.1| flagellar biosynthetic protein FliP [Shewanella baltica OS183] gi|306914376|gb|EFN44797.1| flagellar biosynthetic protein FliP [Shewanella baltica BA175] Length = 248 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 93/247 (37%), Positives = 145/247 (58%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIM 58 ++ + L P A L V + + V + + T LS P +LIM Sbjct: 5 ILALVGLVILLCMPSAWAADGVLPAVTVTTGPDGSTEYSVTMQILLLMTSLSFLPAMLIM 64 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIV SILR +G+ P N V+I ++LFMTF++M+P +R + G++P + Q Sbjct: 65 LTSFTRIIIVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFERIYDEGVKPYIEEQ 124 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 +T A ++ EP FM R DL F++++ +I + +LIP+F+ Sbjct: 125 LTLQQAFEKGKEPLKGFMLGQVRTTDLKTFIEISGYK----NIKSPEEAPMSVLIPAFIT 180 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK++ FVL+DGWSL++ Sbjct: 181 SELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVL 240 Query: 239 ENLVKSF 245 L SF Sbjct: 241 GTLANSF 247 >gi|90579937|ref|ZP_01235745.1| flagellar biosynthesis protein [Vibrio angustum S14] gi|90438822|gb|EAS64005.1| flagellar biosynthesis protein [Vibrio angustum S14] Length = 282 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 94/221 (42%), Positives = 139/221 (62%), Gaps = 5/221 (2%) Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84 V P + ++ + T L P ++I++T F R ++V SILR MG+ P N Sbjct: 65 SVTVNPDGSEDYSVTLQILALMTALGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSN 124 Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144 VII +ALF+TF+VMSP +D+ +QP +N QIT A+ + +P FM TR KD Sbjct: 125 QVIIGIALFLTFFVMSPVIDKINANAVQPYINEQITAKEALAKAEDPMRQFMLKQTRVKD 184 Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204 L F++M+ S+ + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+ Sbjct: 185 LETFVNMSGST-----ADDPQTVPLTVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVAS 239 Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 I+MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 240 ILMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 280 >gi|169831899|ref|YP_001717881.1| flagellar biosynthetic protein FliP [Candidatus Desulforudis audaxviator MP104C] gi|169638743|gb|ACA60249.1| flagellar biosynthetic protein FliP [Candidatus Desulforudis audaxviator MP104C] Length = 260 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 99/244 (40%), Positives = 152/244 (62%), Gaps = 9/244 (3%) Query: 6 FFALFLVTPELVFAKS----SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61 +AL ++P +A+ S+ + P + VR T++S+ P L+MVT Sbjct: 21 LWALGGLSPSAAWAQPVPIPSIELTIGEPESPAEVVSSVRLLLFLTVISLLPAFLVMVTS 80 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F R ++V + LR G+G+ PP V+I LALF+T ++M+P + E I+P + +I + Sbjct: 81 FTRIVVVLAFLRAGLGIYQAPPGSVLIGLALFLTVFIMAPVYAQVNEQAIEPFLRGEIDQ 140 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 A +R A P FM +TREKDL LF+ MA + + + ++IP+F+ISEL Sbjct: 141 VEAQERAAGPLREFMLRHTREKDLDLFVRMAEIENP-----VPNELPLTVVIPAFIISEL 195 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 + +F +GF++ LPFLIIDM+VA+I+++MGM MLPP ISLPFK++ FVL+DGW L+V +L Sbjct: 196 KTAFTMGFMLYLPFLIIDMVVASILLSMGMFMLPPVMISLPFKLLLFVLVDGWYLVVRSL 255 Query: 242 VKSF 245 V+SF Sbjct: 256 VESF 259 >gi|167464152|ref|ZP_02329241.1| flagellar biosynthesis protein FliP [Paenibacillus larvae subsp. larvae BRL-230010] Length = 257 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 92/221 (41%), Positives = 150/221 (67%), Gaps = 4/221 (1%) Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84 D+ ++ ++ V + T+LS+AP LI++T F R +IV +RT +G +PPN Sbjct: 39 DIKVGGDSVNGASSTVTILLLLTVLSLAPAFLILMTSFTRIVIVLGFVRTSLGTQQMPPN 98 Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144 V++ LALF+T ++M+PTL ++ +QP + ++ +T A+++ AEP FM ++TR KD Sbjct: 99 QVLVGLALFLTLFIMAPTLGDINQVAVQPYIKGELNQTQALEKAAEPIKKFMWSHTRPKD 158 Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204 L LF+D +++ N + L+P+F ISEL+ +F++GF+I +PFL+IDMI+++ Sbjct: 159 LQLFLDYSNAEKPN----GPEDTPIAALVPAFAISELKTAFQMGFMIFIPFLVIDMIISS 214 Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MAMGMMMLPP ISLPFK++ FVL+DGW L+V++L+ S+ Sbjct: 215 TLMAMGMMMLPPVMISLPFKILLFVLVDGWYLVVKSLLVSY 255 >gi|222112240|ref|YP_002554504.1| flagellar biosynthesis protein flip [Acidovorax ebreus TPSY] gi|221731684|gb|ACM34504.1| flagellar biosynthetic protein FliP [Acidovorax ebreus TPSY] Length = 251 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 96/226 (42%), Positives = 140/226 (61%), Gaps = 4/226 (1%) Query: 20 KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79 +L V+ + + ++T FT LS P +L+M+T F R +IV S+LR +G Sbjct: 28 AGALPLVIGSGPGGTSYSVPIQTLLFFTALSFLPAVLLMMTGFTRIVIVLSLLRQAIGTQ 87 Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139 S PPN VII L+LF+T +VM PTLD+ + P N IT AIQR P FM Sbjct: 88 SAPPNQVIIGLSLFLTLFVMGPTLDKVYQEAYVPYTTNAITFEQAIQRAEAPMRGFMLKQ 147 Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199 TR+ D +LF +A T + R+L+P+F+ SEL+ +F+IGF+I +PFLIID Sbjct: 148 TRQSDFALFARLAKLDEGVT----AETAPLRVLVPAFVTSELKSAFQIGFMIFIPFLIID 203 Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+V++++M++GMMML P ++LPFK++ FVL DGW+LL+ +L SF Sbjct: 204 MVVSSVLMSLGMMMLSPVLVALPFKLMLFVLADGWNLLIGSLAASF 249 >gi|239997094|ref|ZP_04717618.1| flagellar biosynthesis protein FliP [Alteromonas macleodii ATCC 27126] Length = 251 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 90/233 (38%), Positives = 142/233 (60%), Gaps = 5/233 (2%) Query: 15 ELVFAKSSLHDVMNIPADLSIS--TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72 E +A+ + V T ++ I T LS+ P ++M+T F R I+V SIL Sbjct: 18 EPAYAQQGISAVTVTTNQDGSQDYTMTLQALFIMTALSLIPAFIMMMTSFTRIIVVLSIL 77 Query: 73 RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132 R +G+ P N ++I ++LF++ ++M+P + E +QP +N Q+T A+++ P Sbjct: 78 RQAIGLQQSPSNQILIGVSLFLSMFIMAPVFEEVNERALQPYLNEQLTSLDALEQAKGPM 137 Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192 FM + TR KDL F+ +A + D + + ILIP+F+ SEL+ +F+IGF++ Sbjct: 138 RAFMLSQTRVKDLETFVRIAGDEGKYAD---TNEVPLTILIPAFVTSELKTAFQIGFMLF 194 Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PFLIID++VA+I+MAMGMMML P +SLPFK++ FVL+DGW+L+ L SF Sbjct: 195 IPFLIIDLVVASILMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLIFGTLATSF 247 >gi|332799191|ref|YP_004460690.1| flagellar biosynthetic protein FliP [Tepidanaerobacter sp. Re1] gi|332696926|gb|AEE91383.1| flagellar biosynthetic protein FliP [Tepidanaerobacter sp. Re1] Length = 258 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 97/241 (40%), Positives = 148/241 (61%), Gaps = 3/241 (1%) Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64 C+ + P+ + + + ++ + TILS+AP +L ++T F R Sbjct: 20 CYEKIVYAAPQDIPIPVPSFPFIKQAETTGETAMALQIVLLLTILSLAPSILTLLTSFTR 79 Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124 IIV S +R G+G+ VPP V+I LALF+T +VM+P IQP MN +I + A Sbjct: 80 TIIVLSFVRNGLGVQQVPPTQVLIGLALFITVFVMAPVWTEINSEAIQPYMNQEIDTSEA 139 Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184 ++R P FM TREKDL+LF+ A T + D I +LIPSF+ISEL+ + Sbjct: 140 LRRSQIPLRNFMFRQTREKDLALFVHYAKLE---TPLNTLDDIPTYVLIPSFIISELKTA 196 Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 F++GF+I +PFL+IDMIV++ +M+MGM+MLPP ISLPFK++ FV++DGW+L++ +++ Sbjct: 197 FQMGFIIFIPFLVIDMIVSSTLMSMGMLMLPPIMISLPFKILLFVMVDGWNLVINSILAG 256 Query: 245 F 245 F Sbjct: 257 F 257 >gi|149182519|ref|ZP_01860992.1| flagellar biosynthesis protein P [Bacillus sp. SG-1] gi|148849779|gb|EDL63956.1| flagellar biosynthesis protein P [Bacillus sp. SG-1] Length = 221 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 95/207 (45%), Positives = 143/207 (69%), Gaps = 4/207 (1%) Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98 V+ +FT+LSIAP +LI++T F R +IV S +RT + +PPN V++ L+LF+TF++ Sbjct: 19 SVKLLLLFTVLSIAPGILILMTSFTRIVIVLSFVRTSLATQQMPPNQVLVGLSLFLTFFI 78 Query: 99 MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 M+PT E + PL N +I A + A PF FM +TR+KDL LF++ + + Sbjct: 79 MAPTFQEVNETALTPLFNEEINLEQAYENAAGPFKDFMSKHTRQKDLELFLNYSGAERPE 138 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 D I L+P+F +SE++ +F+IGF+I +PFL+IDM+VA+I+M+MGMMMLPP Sbjct: 139 ----SIDDIPLTALVPAFALSEIKTAFQIGFMIFIPFLVIDMVVASILMSMGMMMLPPVM 194 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLPFK++ FVL+DGW L+V++L++SF Sbjct: 195 ISLPFKILLFVLVDGWYLVVKSLLQSF 221 >gi|254251034|ref|ZP_04944352.1| Flagellar transport protein FliP [Burkholderia dolosa AUO158] gi|124893643|gb|EAY67523.1| Flagellar transport protein FliP [Burkholderia dolosa AUO158] Length = 253 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 93/216 (43%), Positives = 144/216 (66%), Gaps = 4/216 (1%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P + + V+T + T+LS P +L+M+T F R IIV S+LR +G + PPN V++ Sbjct: 41 PNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQALGTATTPPNQVLVG 100 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 LA+F+TF+VMSP LD++ G +P + + A+QR PF FM TRE DL+LF Sbjct: 101 LAMFLTFFVMSPVLDKAYTDGYKPFSDGAMPMEQAVQRGVAPFKSFMLKQTRETDLALFA 160 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 ++ + + + + +L+P+F+ SEL+ F+IGF I +PFLIIDM+VA+++M+M Sbjct: 161 KIS----KAAPMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSM 216 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMM+ P+++SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 217 GMMMVSPSTVSLPFKLMLFVLVDGWQLLIGSLAQSF 252 >gi|304311110|ref|YP_003810708.1| Flagellar transport protein FliP [gamma proteobacterium HdN1] gi|301796843|emb|CBL45055.1| Flagellar transport protein FliP [gamma proteobacterium HdN1] Length = 253 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 93/240 (38%), Positives = 148/240 (61%), Gaps = 6/240 (2%) Query: 9 LFLVTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65 ++L+ A D +++ P + ++ G T+L++ P +++M+T F R Sbjct: 15 VWLMPSSSSAADPWSVDALSLKTNPDGTESWSVSLQVLGFMTVLTLLPAIVLMMTAFTRI 74 Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 IIVFSILR +G+ P N +++ LALF+T +VM P D + ++P +I AI Sbjct: 75 IIVFSILRQAIGLQQAPSNQILVGLALFLTLFVMRPVFDEINRVAVEPYQAEKIDGMQAI 134 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185 Q + P FM RE DL+LF+++A R ++ D + I+IP+F+ SEL+ +F Sbjct: 135 QAASGPLRKFMMAQIREADLTLFIELAGEQDRYHEV---DEVPLTIIIPAFITSELKTAF 191 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +IGFL+ +PFLIIDM+VA+++MAMGMMML P ISLPFK++ FV +DGW+++V +L S+ Sbjct: 192 QIGFLLFIPFLIIDMVVASVLMAMGMMMLSPMIISLPFKIMLFVFVDGWAMVVGSLAASY 251 >gi|297538204|ref|YP_003673973.1| flagellar biosynthetic protein FliP [Methylotenera sp. 301] gi|297257551|gb|ADI29396.1| flagellar biosynthetic protein FliP [Methylotenera sp. 301] Length = 258 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 108/243 (44%), Positives = 154/243 (63%), Gaps = 6/243 (2%) Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSIS--TWIVRTFGIFTILSIAPILLIMVTCF 62 A L+ P A++ + V +PA T ++T + T L+ P L+M+T F Sbjct: 19 LVLASMLMLPGTALAENGMPLVNALPAAGGGQNYTLSLQTLILLTSLTFLPAALLMMTGF 78 Query: 63 PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122 R IIV S+LR +G S PPN V++ LALF+TF+VMSP +D+ QPL N+IT Sbjct: 79 TRIIIVLSLLRQALGTQSAPPNQVMVGLALFLTFFVMSPVIDKIYVDAYQPLSENKITMQ 138 Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182 A+ + A P FM TRE DL+LF++MA I D + +L+P+FM SEL+ Sbjct: 139 EAMDKGAAPLKAFMMKQTREGDLALFVNMAKIEK----IETPDQVPLLVLVPAFMTSELK 194 Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242 +F+IGF I +PFLIIDM+VA+++MAMGMMM+ P+ +SLPFK++ FVL+DGW LL+ +LV Sbjct: 195 TAFQIGFAIFIPFLIIDMVVASVLMAMGMMMVSPSIVSLPFKLMLFVLVDGWQLLLGSLV 254 Query: 243 KSF 245 +SF Sbjct: 255 QSF 257 >gi|293605018|ref|ZP_06687413.1| flagellar biosynthetic protein FliP [Achromobacter piechaudii ATCC 43553] gi|292816587|gb|EFF75673.1| flagellar biosynthetic protein FliP [Achromobacter piechaudii ATCC 43553] Length = 263 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 103/247 (41%), Positives = 150/247 (60%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIM 58 M+ P V A+++L + P T+ + +T + T LS P L+M Sbjct: 19 MLAAAAVLGLAFFPAGVVAQATLPALTATPGPNGSETYSLSMQTMLLMTSLSFLPAALLM 78 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIV +LR+ MG PPN V+I LALF+TFY MSP D+ +PL Sbjct: 79 MTGFTRIIIVLGLLRSAMGTAMSPPNHVLIGLALFLTFYTMSPVFDKIYADAYKPLSEGS 138 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I TA++R A P FM + TRE DLSLF ++A + + RIL+P+F+ Sbjct: 139 IQFETAVERAAGPLRTFMLHQTRENDLSLFANLAKQP----ALEDPSQVPLRILVPAFIT 194 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF I +PFLIID++VA+++MA+GMMM+PP +++LPFK++ FVL DGW+LL+ Sbjct: 195 SELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPVTVALPFKLMLFVLADGWNLLM 254 Query: 239 ENLVKSF 245 +L +SF Sbjct: 255 GSLAQSF 261 >gi|182680542|ref|YP_001834688.1| flagellar biosynthetic protein FliP [Beijerinckia indica subsp. indica ATCC 9039] gi|182636425|gb|ACB97199.1| flagellar biosynthetic protein FliP [Beijerinckia indica subsp. indica ATCC 9039] Length = 246 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 122/246 (49%), Positives = 173/246 (70%), Gaps = 2/246 (0%) Query: 1 MIRYCFFALFLVTPE-LVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 M R + ++ +A+ + P + ++S I++ + TILS+AP LL+MV Sbjct: 1 MKRLLIVSFLIIALAPAAYAQVPDLSTLVPPGNGTVSGRIIQLVALLTILSVAPGLLVMV 60 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F RF I S LR+G+G+ S P NLV+ISL+LFMTFYVMSP +++ + G++P+M+NQ+ Sbjct: 61 TSFTRFAIALSFLRSGLGLQSTPANLVLISLSLFMTFYVMSPVFEKAWDGGVKPMMDNQL 120 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 TE A ++ +PF FM R KDL LF D+A + + D T ++ IE RILIP+FMIS Sbjct: 121 TEQEAFPKIIQPFREFMSGQVRGKDLKLFTDLAKENFPSVDQTGSE-IELRILIPAFMIS 179 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 ELRR FE+GFLI+LPFL+IDMI + I M+MGMMMLPPT I+LP KV+FF+LIDGW++L+ Sbjct: 180 ELRRGFEMGFLIVLPFLVIDMITSAITMSMGMMMLPPTVIALPVKVLFFILIDGWNMLIG 239 Query: 240 NLVKSF 245 +LV+S+ Sbjct: 240 SLVRSY 245 >gi|77165627|ref|YP_344152.1| flagellar biosynthesis protein FliP [Nitrosococcus oceani ATCC 19707] gi|76883941|gb|ABA58622.1| Flagellar transport protein FliP [Nitrosococcus oceani ATCC 19707] Length = 262 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 96/233 (41%), Positives = 150/233 (64%), Gaps = 6/233 (2%) Query: 15 ELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72 +A + + T+ V + G+ T+L++ P ++++T F R I+VFSIL Sbjct: 30 AAGWAAPGVPALAVTADGNGEQTYTVTLQILGLMTVLTLLPAAVMVMTSFTRIIVVFSIL 89 Query: 73 RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132 R +G+ P + ++I LALF+TF++MSP LD++ + G++P +I+ T A+ RV EPF Sbjct: 90 RQALGLAQTPSSQILIGLALFLTFFIMSPVLDKAYQEGVKPYFQEEISVTDALARVREPF 149 Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192 FM TRE DL LF +++ + + + +L+P+F+ SEL+ +F+IGFL+ Sbjct: 150 HHFMIAQTRETDLKLFAEISGR----EAFESPEQVPFSLLVPAFITSELKTAFQIGFLLF 205 Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PFLIID++VA+++MAMGMMML P +SLPFK++ FVLIDGWSLL+ L SF Sbjct: 206 IPFLIIDLVVASVLMAMGMMMLSPMLVSLPFKLLLFVLIDGWSLLMGTLASSF 258 >gi|144900473|emb|CAM77337.1| Type III secretion system inner membrane P protein [Magnetospirillum gryphiswaldense MSR-1] Length = 253 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 104/239 (43%), Positives = 159/239 (66%), Gaps = 7/239 (2%) Query: 10 FLVTPELVFAKS---SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66 LV +A+ +L S + I++ + T+LS+AP +L+MVT F R + Sbjct: 16 VLVLSAPAWAQQFSLNLGAGGGGGNANSTTLRIIQLIALTTVLSVAPSILVMVTSFTRIV 75 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IV LR +G PPN+V++SLA+F+T ++M+PTL++S G+QP + + E A + Sbjct: 76 IVLGFLRQALGTMQSPPNMVLVSLAMFLTAFIMAPTLEQSWNDGVQPYVEGSLEEAAAFE 135 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 +P FM + R++DL LF+D++ R D+ K + + LIP+FMISELRR+FE Sbjct: 136 ATVKPLQTFMLRHVRDQDLQLFLDLS----RTPDVAKAEDAPLKALIPAFMISELRRAFE 191 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGFLI LPF++IDM++A+++M+MGMMM+PP +SLPFK+IFFVL+DGW ++V +LV+SF Sbjct: 192 IGFLIFLPFIVIDMVIASVLMSMGMMMIPPAMVSLPFKLIFFVLVDGWYMVVGSLVQSF 250 >gi|85859180|ref|YP_461382.1| flagellar biosynthesis protein FliP [Syntrophus aciditrophicus SB] gi|85722271|gb|ABC77214.1| flagellar biosynthetic protein [Syntrophus aciditrophicus SB] Length = 262 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 92/249 (36%), Positives = 152/249 (61%), Gaps = 9/249 (3%) Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSIST-----WIVRTFGIFTILSIAPILL 56 + ++ P + A+ +++ + + +++ I T+LS+ P +L Sbjct: 17 VLLLVILFTVLGPGVASAEPLSLPNISLTVGGNADSPDKVATVIQLLFILTVLSLTPAIL 76 Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116 +M+T F R +IV S+LR MG +P N +II L+LF+TF++MSP ++P + Sbjct: 77 LMLTSFTRIVIVLSLLRQAMGTQQMPSNQIIIGLSLFLTFFIMSPVWQSVHSEALKPYYD 136 Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176 +I+ AI+R P FM TREKD++LF+ ++ K + +L+P+F Sbjct: 137 EEISGEQAIERAVIPVKAFMLKQTREKDIALFLQISKGKRPE----KPADLALSVLVPAF 192 Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236 +ISEL+ +F+IGFL+ LPF IIDM+VA+++++MGMMMLPP +SLPFK++ FVL+DGW L Sbjct: 193 VISELKTAFQIGFLLFLPFFIIDMVVASVLLSMGMMMLPPIMMSLPFKLLLFVLVDGWYL 252 Query: 237 LVENLVKSF 245 ++ +LV+SF Sbjct: 253 IIGSLVQSF 261 >gi|121596084|ref|YP_987980.1| flagellar biosynthesis protein FliP [Acidovorax sp. JS42] gi|120608164|gb|ABM43904.1| flagellar biosynthetic protein FliP [Acidovorax sp. JS42] Length = 251 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 95/226 (42%), Positives = 140/226 (61%), Gaps = 4/226 (1%) Query: 20 KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79 +L V+ + + ++T FT LS P +L+M+T F R +IV S+LR +G Sbjct: 28 AGALPLVIGSGPGGTSYSVPIQTLLFFTALSFLPAVLLMMTGFTRIVIVLSLLRQAIGTQ 87 Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139 S PPN VII L+LF+T +VM PTLD+ + P N IT AIQ+ P FM Sbjct: 88 SAPPNQVIIGLSLFLTLFVMGPTLDKVYQEAYVPYTTNAITFEQAIQKAEAPMRGFMLKQ 147 Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199 TR+ D +LF +A T + R+L+P+F+ SEL+ +F+IGF+I +PFLIID Sbjct: 148 TRQSDFALFARLAKLDEGVT----AETAPLRVLVPAFVTSELKSAFQIGFMIFIPFLIID 203 Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+V++++M++GMMML P ++LPFK++ FVL DGW+LL+ +L SF Sbjct: 204 MVVSSVLMSLGMMMLSPVLVALPFKLMLFVLADGWNLLIGSLAASF 249 >gi|30248477|ref|NP_840547.1| flagellar biosynthesis protein FliP [Nitrosomonas europaea ATCC 19718] gi|30138363|emb|CAD84372.1| Flagella transport protein FliP family [Nitrosomonas europaea ATCC 19718] Length = 268 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 94/236 (39%), Positives = 151/236 (63%), Gaps = 6/236 (2%) Query: 12 VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIA--PILLIMVTCFPRFIIVF 69 V ++ K+ V + PA +T+ + + + S+ P +++M++ F R IIV Sbjct: 35 VAGPVLAQKTGFPAVTSTPAAGGGATYTLSLQTLLLLTSLTFLPAVILMMSSFTRIIIVL 94 Query: 70 SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129 S+LR MG S PPN V++ LALF++F++MSP +D+ P ++I+ A+++ Sbjct: 95 SLLRQAMGTQSSPPNQVLLGLALFLSFFIMSPVIDKVYTEAYLPFSEDKISIVEAMEKAG 154 Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189 +P FM TRE D++LF +A N +I D + +IL+P+++ SEL+ +F+IGF Sbjct: 155 DPLKSFMLRQTREADIALFARIAE----NGEIESPDQVPMKILVPAYITSELKTAFQIGF 210 Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++ +PFLIIDM+VA+ +MAMGMMML P ISLPFK++ FVL+DGW+LL+ +L +SF Sbjct: 211 VVFIPFLIIDMVVASTLMAMGMMMLSPMIISLPFKLMLFVLVDGWNLLIGSLTQSF 266 >gi|332305669|ref|YP_004433520.1| flagellar biosynthetic protein FliP [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172998|gb|AEE22252.1| flagellar biosynthetic protein FliP [Glaciecola agarilytica 4H-3-7+YE-5] Length = 251 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 91/244 (37%), Positives = 142/244 (58%), Gaps = 5/244 (2%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSIS--TWIVRTFGIFTILSIAPILLIMVTC 61 + A+ L P A+ + + T ++ I T LS+ P ++M+T Sbjct: 7 WLLAAVLLAAPSWAIAEPGIPALTMTENADGSQDYTMTLQVVAIMTALSLLPAFIMMMTS 66 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F R IIV SILR +G+ P N ++I ++LF++ ++M+P ++ E +QP +N QIT Sbjct: 67 FTRIIIVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPVFEKINETALQPYLNEQITS 126 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 A + EP FM TR KDL F+++ + + ILIP+F+ SEL Sbjct: 127 IQAYELAKEPLRGFMLAQTRVKDLETFVEI---GGYEDQFQEPADVPMNILIPAFVTSEL 183 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 + +F+IGF++ +PFLI+D++VA+I+MAMGMMML P +SLPFK++ FVL+DGW+L+ L Sbjct: 184 KTAFQIGFMLFIPFLILDLVVASILMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLIFGTL 243 Query: 242 VKSF 245 SF Sbjct: 244 ANSF 247 >gi|300113613|ref|YP_003760188.1| flagellar biosynthetic protein FliP [Nitrosococcus watsonii C-113] gi|299539550|gb|ADJ27867.1| flagellar biosynthetic protein FliP [Nitrosococcus watsonii C-113] Length = 262 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 95/233 (40%), Positives = 149/233 (63%), Gaps = 6/233 (2%) Query: 15 ELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72 +A + + T+ V + G+ T+L++ P ++++T F R I+VFSIL Sbjct: 30 ATGWAAPGVPALAVTADGNGEQTYTVTLQILGLMTVLTLLPAAVMVMTSFTRIIVVFSIL 89 Query: 73 RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132 R +G+ P + ++I LALF+TF++MSP LD++ + G++P +I+ A+ RV EPF Sbjct: 90 RQALGLAQTPSSQILIGLALFLTFFIMSPVLDKAYQEGVKPYFQEEISVADALARVREPF 149 Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192 FM TRE DL LF +++ + + + +L+P+F+ SEL+ +F+IGFL+ Sbjct: 150 HHFMIAQTRETDLKLFAEISGR----EAFESPEQVPFSLLVPAFITSELKTAFQIGFLLF 205 Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PFLIID++VA+++MAMGMMML P +SLPFK++ FVLIDGWSLL+ L SF Sbjct: 206 IPFLIIDLVVASVLMAMGMMMLSPMLVSLPFKLLLFVLIDGWSLLMGTLASSF 258 >gi|56419769|ref|YP_147087.1| flagellar biosynthesis protein FliP [Geobacillus kaustophilus HTA426] gi|56379611|dbj|BAD75519.1| flagellar biosynthetic protein [Geobacillus kaustophilus HTA426] Length = 222 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 97/209 (46%), Positives = 146/209 (69%), Gaps = 4/209 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + V+ + T+LSIAP +LIM+TCF R +IV S +RT +G +PPN V++ LALF+TF Sbjct: 17 STAVKLLLLLTVLSIAPGILIMMTCFTRIVIVLSFVRTALGTQQMPPNQVLVGLALFLTF 76 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 ++M+PT + +QPL ++I A +R A P FM TR++DL+LF+ + + Sbjct: 77 FIMAPTWKEINDQALQPLFADKIDLEEAYERAAVPLKQFMSQYTRQEDLALFLSYSGAKQ 136 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 T + I L+P+F ISEL+ +F++GF+I +PFL+IDMIVA+++M+MGMMMLPP Sbjct: 137 PKT----INDIPMTALVPAFAISELKTAFQMGFMIFIPFLVIDMIVASVLMSMGMMMLPP 192 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLPFK++ FVL+DGW L+V++L++SF Sbjct: 193 VMISLPFKILLFVLVDGWHLVVKSLLQSF 221 >gi|153011518|ref|YP_001372732.1| flagellar biosynthesis protein FliP [Ochrobactrum anthropi ATCC 49188] gi|151563406|gb|ABS16903.1| flagellar biosynthetic protein FliP [Ochrobactrum anthropi ATCC 49188] Length = 246 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 125/226 (55%), Positives = 168/226 (74%), Gaps = 3/226 (1%) Query: 20 KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79 + D + + S IV+ FG+ T+LSIAP LLIMVT F RF I FS+LR+G+G+ Sbjct: 23 QPLTLDNLLPAGSGAASGQIVQLFGLLTVLSIAPGLLIMVTSFTRFAIAFSLLRSGLGLQ 82 Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139 + P ++V+ISLALFMTFYVM+P DR+ G+QPLM N+IT+ A +++PF FM Sbjct: 83 TAPASMVMISLALFMTFYVMAPAFDRAWNNGVQPLMRNEITQEAAFGEISQPFREFMMGQ 142 Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199 R+KDL LF D+A S R D +++R+L+P+FMISELRR FEIGFLI+LPFL+ID Sbjct: 143 VRDKDLRLFEDLADPSFRTGDDGI---VDFRVLVPAFMISELRRGFEIGFLIVLPFLVID 199 Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW++LV +L++SF Sbjct: 200 LVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245 >gi|238785487|ref|ZP_04629470.1| Flagellar biosynthetic protein fliP [Yersinia bercovieri ATCC 43970] gi|238713589|gb|EEQ05618.1| Flagellar biosynthetic protein fliP [Yersinia bercovieri ATCC 43970] Length = 249 Score = 209 bits (531), Expect = 3e-52, Method: Composition-based stats. Identities = 93/227 (40%), Positives = 146/227 (64%), Gaps = 6/227 (2%) Query: 21 SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 + L +++ P +W V+T T LS P L+M+T F R IIV +LR +G Sbjct: 25 AQLPGLISQPLANGGQSWSLPVQTLVFITALSFLPAALLMMTSFTRIIIVLGLLRNALGT 84 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 S PPN V++ LALF+TF++MSP D+ + P ++I+ A+ + ++P FM Sbjct: 85 PSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAMDKGSQPLREFMLR 144 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 TRE DL+L+ +A+ + + + RIL+P+++ SEL+ +F+IGF + +PFLII Sbjct: 145 QTRESDLALYARLANLP----PLEGPEVVPMRILLPAYVTSELKTAFQIGFTVFIPFLII 200 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 D++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 201 DLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 247 >gi|118588703|ref|ZP_01546111.1| flagellar biosynthesis protein P [Stappia aggregata IAM 12614] gi|118438689|gb|EAV45322.1| flagellar biosynthesis protein P [Stappia aggregata IAM 12614] Length = 237 Score = 209 bits (531), Expect = 3e-52, Method: Composition-based stats. Identities = 107/238 (44%), Positives = 163/238 (68%), Gaps = 6/238 (2%) Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67 AL V A+ + D +++ V+ + T+LS+AP +L+MVT F R ++ Sbjct: 3 ALLAVLVGPAAAQEI---SVGFGEDTTLTERAVQMVILLTVLSLAPSILVMVTSFTRIVV 59 Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127 V S+LR+ +G+ + PPN+V++SLALF++ ++M PTL S + G+QPL++ I A +R Sbjct: 60 VLSLLRSAIGLQTAPPNMVMVSLALFLSAFIMMPTLQASYDAGVQPLIDGDIELEQAFER 119 Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187 ++PF FM + REKDL+LF +++ + + + L+P+FMISELRR+FEI Sbjct: 120 ASDPFRTFMLSQVREKDLALFEELSGAE---EAPESPEDLSMATLVPAFMISELRRAFEI 176 Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GFL+ LPFLIID+++A+++M+MGMMMLPP ISLPFK+IFFVL+DGW+L+ +LVKSF Sbjct: 177 GFLLYLPFLIIDLVIASVLMSMGMMMLPPVVISLPFKLIFFVLVDGWNLVAGSLVKSF 234 >gi|187478200|ref|YP_786224.1| flagellar biosynthesis protein FliP [Bordetella avium 197N] gi|115422786|emb|CAJ49314.1| flagellar biosynthetic protein [Bordetella avium 197N] Length = 255 Score = 209 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 103/247 (41%), Positives = 150/247 (60%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIM 58 ++ V P A+++L + P T+ + +T + T LS P L+M Sbjct: 11 LLGLATLVSLAVMPSGAIAQATLPALTTTPGVNGSQTYSLSMQTLLLMTSLSFLPAALLM 70 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIV +LR+ MG PPN V++ +ALF+TFY MSP D+ QPL Sbjct: 71 MTGFTRIIIVLGLLRSAMGTAMSPPNHVLVGIALFLTFYTMSPVFDKIYTEAYQPLSTGS 130 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I TA++R P FM + TRE DL+LF ++A+ I + RILIP+F+ Sbjct: 131 IPFETALERAGAPLHTFMLHQTRENDLALFANLANIPK----IEDPSKVPMRILIPAFIT 186 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF I +PFLIID++VA+++MA+GMMM+PP ++SLPFK++ FVL DGW+LL+ Sbjct: 187 SELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPVTVSLPFKLMLFVLADGWNLLL 246 Query: 239 ENLVKSF 245 +L KSF Sbjct: 247 GSLAKSF 253 >gi|78043022|ref|YP_359852.1| flagellar biosynthesis protein FliP [Carboxydothermus hydrogenoformans Z-2901] gi|77995137|gb|ABB14036.1| flagellar biosynthetic protein FliP [Carboxydothermus hydrogenoformans Z-2901] Length = 254 Score = 209 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 91/193 (47%), Positives = 137/193 (70%), Gaps = 4/193 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P L+++T F R ++V S+LR MG PPN V+I LALF+T ++MSP +++ + IQ Sbjct: 65 PAFLLLMTSFTRIVVVLSLLRNAMGTQQAPPNQVLIGLALFLTIFIMSPVINKINQDAIQ 124 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P +NNQIT+ AI+ P FM TREKDL+LF+++A T D + + ++ Sbjct: 125 PYLNNQITQEQAIRAAEAPLKDFMLKQTREKDLALFIELAKLPRPQT----KDDVPFTVV 180 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 +P+F+ISEL+ +F++GF++ LPFLIIDM+VA+I+M+MGM M+PP ++LPFK++ FVL D Sbjct: 181 VPAFIISELKTAFQMGFMLFLPFLIIDMVVASILMSMGMFMIPPMLVALPFKLLLFVLAD 240 Query: 233 GWSLLVENLVKSF 245 GW L+V++LV SF Sbjct: 241 GWYLVVKSLVSSF 253 >gi|241763645|ref|ZP_04761695.1| flagellar biosynthetic protein FliP [Acidovorax delafieldii 2AN] gi|241367120|gb|EER61486.1| flagellar biosynthetic protein FliP [Acidovorax delafieldii 2AN] Length = 263 Score = 209 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 96/246 (39%), Positives = 148/246 (60%), Gaps = 5/246 (2%) Query: 2 IRYCFFALFLV-TPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 + AL +V P + SL ++ + + ++T FT LS P +L+M+T Sbjct: 21 WLWGVGALAMVHLPAAAQSAGSLPLLVGSGNSGTSFSVPIQTLLFFTALSFLPAVLLMMT 80 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R +IV S+LR +G S PPN VII L+LF+TF+VM PTLD+ + P N I+ Sbjct: 81 GFTRIVIVLSLLRQALGTQSAPPNQVIIGLSLFLTFFVMGPTLDKVYQDAYLPYTTNTIS 140 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A+++ P FM TR+ D +LF +A + R+L+P+F+ SE Sbjct: 141 FEAALEKAEAPMRSFMLKQTRQSDFALFSRLAKL----DVSVTAETAPLRVLVPAFVTSE 196 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +F+IGF+I +PFL+IDM+V++I+M++GMMML P ++LPFK++ FVL DGW+LL+ + Sbjct: 197 LKSAFQIGFMIFIPFLVIDMVVSSILMSLGMMMLSPVLVALPFKLMLFVLADGWNLLIGS 256 Query: 241 LVKSFI 246 L SF+ Sbjct: 257 LAASFV 262 >gi|89075523|ref|ZP_01161934.1| flagellar biosynthesis protein [Photobacterium sp. SKA34] gi|89048795|gb|EAR54366.1| flagellar biosynthesis protein [Photobacterium sp. SKA34] Length = 282 Score = 209 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 94/221 (42%), Positives = 139/221 (62%), Gaps = 5/221 (2%) Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84 V P + ++ + T L P ++I++T F R ++V SILR MG+ P N Sbjct: 65 SVTVNPDGSEDYSVTLQILALMTALGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSN 124 Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144 VII +ALF+TF+VMSP +D+ +QP +N QIT A+ + +P FM TR KD Sbjct: 125 QVIIGIALFLTFFVMSPVIDKINADAVQPYINEQITAKEALAKAEDPMRQFMLKQTRVKD 184 Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204 L F++M+ S+ + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+ Sbjct: 185 LETFVNMSGST-----ADDPQTVPLTVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVAS 239 Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 I+MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 240 ILMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 280 >gi|261419434|ref|YP_003253116.1| flagellar biosynthesis protein FliP [Geobacillus sp. Y412MC61] gi|297530591|ref|YP_003671866.1| flagellar biosynthetic protein FliP [Geobacillus sp. C56-T3] gi|319766249|ref|YP_004131750.1| flagellar biosynthetic protein FliP [Geobacillus sp. Y412MC52] gi|261375891|gb|ACX78634.1| flagellar biosynthetic protein FliP [Geobacillus sp. Y412MC61] gi|297253843|gb|ADI27289.1| flagellar biosynthetic protein FliP [Geobacillus sp. C56-T3] gi|317111115|gb|ADU93607.1| flagellar biosynthetic protein FliP [Geobacillus sp. Y412MC52] Length = 222 Score = 209 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 97/209 (46%), Positives = 146/209 (69%), Gaps = 4/209 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + V+ + T+LSIAP +LIM+TCF R +IV S +RT +G +PPN V++ LALF+TF Sbjct: 17 STAVKLLLLLTVLSIAPGILIMMTCFTRIVIVLSFVRTALGTQQMPPNQVLVGLALFLTF 76 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 ++M+PT + +QPL ++I A +R A P FM TR++DL+LF+ + + Sbjct: 77 FIMAPTWKDINDQALQPLFADKIDLEEAYERAAVPLKQFMSQYTRQEDLALFLSYSGAKQ 136 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 T + I L+P+F ISEL+ +F++GF+I +PFL+IDMIVA+++M+MGMMMLPP Sbjct: 137 PKT----INDIPMTALVPAFAISELKTAFQMGFMIFIPFLVIDMIVASVLMSMGMMMLPP 192 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLPFK++ FVL+DGW L+V++L++SF Sbjct: 193 VMISLPFKILLFVLVDGWHLVVKSLLQSF 221 >gi|33592492|ref|NP_880136.1| flagellar biosynthesis protein FliP [Bordetella pertussis Tohama I] gi|33572138|emb|CAE41681.1| flagellar biosynthetic protein FliP [Bordetella pertussis Tohama I] gi|332381910|gb|AEE66757.1| flagellar biosynthesis protein FliP [Bordetella pertussis CS] Length = 244 Score = 209 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 101/236 (42%), Positives = 147/236 (62%), Gaps = 6/236 (2%) Query: 12 VTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVF 69 + P A+++L + P T+ + +T + T LS P L+M+T F R IIV Sbjct: 11 LWPSGALAQATLPALTATPGPNGSETYSLSMQTLLLMTSLSFLPAALLMMTGFTRIIIVL 70 Query: 70 SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129 +LR+ MG PPN V+I LALF+TFY MSP D+ QPL I TA++R Sbjct: 71 GLLRSAMGTAMSPPNHVLIGLALFLTFYTMSPVFDKIYTDAYQPLAAGSIPFETAVERAG 130 Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189 P FM + TRE DL+LF ++A+ + + RILIP+F+ SEL+ +F+IGF Sbjct: 131 APLHNFMLHQTRENDLTLFANLANLP----AMEDPSQVPMRILIPAFITSELKTAFQIGF 186 Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 I +PFLIID++VA+++MA+GMMM+PP +++LPFK++ FVL DGW LL+ +L +SF Sbjct: 187 TIFIPFLIIDLVVASVLMALGMMMVPPVTVALPFKLMLFVLADGWHLLLGSLAQSF 242 >gi|83858799|ref|ZP_00952321.1| flagellar biosynthesis protein FliP [Oceanicaulis alexandrii HTCC2633] gi|83853622|gb|EAP91474.1| flagellar biosynthesis protein FliP [Oceanicaulis alexandrii HTCC2633] Length = 258 Score = 209 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 100/216 (46%), Positives = 154/216 (71%), Gaps = 5/216 (2%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 D +++ +++ + T+LS+AP +LIM T F R ++V S+LRT MG+ PPN V+IS Sbjct: 41 GNDTALTERVLQMIALLTVLSLAPSILIMTTSFIRIVVVLSLLRTAMGLQQSPPNAVLIS 100 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 L+LF+T ++M+P ++ + G++PL++ Q++ A A+P FM +TRE+DL LF+ Sbjct: 101 LSLFLTAFIMAPVFTQAYQDGVEPLLSGQLSNQEAFSAAAQPVKTFMLAHTREEDLGLFL 160 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 +++ + ++ P+FMISELRR+FEIGFL+ +PFLIID++VA+I+M+M Sbjct: 161 NISG-----EEPETAQDTPVHVVAPAFMISELRRAFEIGFLLFIPFLIIDLVVASILMSM 215 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMMLPP ISLPFK+IFFVL+DGWSL++ +LV+SF Sbjct: 216 GMMMLPPVIISLPFKLIFFVLVDGWSLVIGSLVQSF 251 >gi|167560941|ref|ZP_02353857.1| flagellar biosynthesis protein FliP [Burkholderia oklahomensis EO147] gi|167568200|ref|ZP_02361074.1| flagellar biosynthesis protein FliP [Burkholderia oklahomensis C6786] Length = 253 Score = 209 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 97/241 (40%), Positives = 148/241 (61%), Gaps = 6/241 (2%) Query: 7 FALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPR 64 A+ L + L + + P +T+ V+T + T+LS P +L+M+T F R Sbjct: 16 LAIGLAPALACAQAAGLPALNSAPGPNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTR 75 Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124 IIV S+LR +G S PPN V++ LALF+T +VMSP LD++ +P + A Sbjct: 76 IIIVLSLLRQALGTASTPPNQVLVGLALFLTLFVMSPVLDKAYADAYKPFSEGTLQMDQA 135 Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184 +QR PF FM TRE DL+LF ++ + + + + +L+P+F+ SEL+ Sbjct: 136 VQRGTAPFKGFMLKQTRETDLALFAKIS----KAAPMQGPEDVPLSLLVPAFVTSELKTG 191 Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 F+IGF I +PFLIIDM+VA+++M+MGMMM+ P ++SLPFK++ FVL+DGW LL+ +L +S Sbjct: 192 FQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATVSLPFKLMLFVLVDGWQLLIGSLAQS 251 Query: 245 F 245 F Sbjct: 252 F 252 >gi|237755394|ref|ZP_04584021.1| flagellar biosynthetic protein FliP [Sulfurihydrogenibium yellowstonense SS-5] gi|237692435|gb|EEP61416.1| flagellar biosynthetic protein FliP [Sulfurihydrogenibium yellowstonense SS-5] Length = 338 Score = 209 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 109/242 (45%), Positives = 152/242 (62%), Gaps = 5/242 (2%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63 Y ++ +V L F+ S A + ++ + TI+SIAP LLI VT F Sbjct: 101 YFIISIIIVLTLLNFSFSYADTFSETLAGFNRLDTTLKILLLITIISIAPALLISVTAFV 160 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 R +IV S+LR +G+ + PPN VI+ LALF+T +VM PT ++ E+ I P + QI++ Sbjct: 161 RIVIVLSLLRHALGIPTAPPNQVIVGLALFLTIFVMKPTFEKINEVSISPYLKKQISDIQ 220 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 AI+ EP FM NTR++DL LF+D+A N I LIP+FMISE++ Sbjct: 221 AIENAKEPLKEFMLKNTRKEDLKLFLDLA-----NEKPLSPKDISISTLIPAFMISEIKT 275 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 +FEI F+I LPFL+ID IVA+I+M+MGMMM+PP ISLPFK++ FVL DG+ LLV+ LV Sbjct: 276 AFEIVFIIYLPFLVIDFIVASILMSMGMMMIPPMFISLPFKLMLFVLADGFELLVKALVS 335 Query: 244 SF 245 S+ Sbjct: 336 SY 337 >gi|148266209|ref|YP_001232915.1| flagellar biosynthesis protein FliP [Geobacter uraniireducens Rf4] gi|146399709|gb|ABQ28342.1| flagellar biosynthetic protein FliP [Geobacter uraniireducens Rf4] Length = 251 Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats. Identities = 95/249 (38%), Positives = 151/249 (60%), Gaps = 8/249 (3%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPAD----LSISTWIVRTFGIFTILSIAPILL 56 + + L ++T FA+ +++ + +++ F + T+LS+AP LL Sbjct: 6 LFKTALILLCMLTAASAFAEPLALPTVSVGMGKVSKPADVAVVLQIFFLMTVLSLAPGLL 65 Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116 +M T F R ++V S LR +G P N +II L+LF+TF++M+P + +QP Sbjct: 66 MMTTSFTRIVVVLSFLRNAIGTQQAPSNQIIIGLSLFLTFFIMAPVWQQINTQALQPYKA 125 Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176 I++ A +R P FM + REKDL+LF+ ++ D I LIP++ Sbjct: 126 QTISQEEAFKRAVAPVRKFMLSQVREKDLALFLSLSKLPRPK----NADDIPTLTLIPAY 181 Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236 M+SEL+ +F+IGFL+ +PFL++DM+VA+++M+MGMMMLPP ISLPFK++ FVL+DGW L Sbjct: 182 MVSELKTAFQIGFLVFIPFLVLDMVVASVLMSMGMMMLPPVMISLPFKILLFVLVDGWGL 241 Query: 237 LVENLVKSF 245 ++ +LVKSF Sbjct: 242 VIGSLVKSF 250 >gi|315124338|ref|YP_004066342.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315018060|gb|ADT66153.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 230 Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats. Identities = 103/225 (45%), Positives = 155/225 (68%), Gaps = 4/225 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 +++ ++ P + + + TIL++AP ++ ++T F R I+VFS LR MG S+ Sbjct: 9 TVNLSLSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSM 68 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PPN ++++LAL +TF++M P +S GI+P + +I A + A+PF FM NTR Sbjct: 69 PPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNTR 128 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 EKDL+LF + + + T D + +L+P+FMISEL+ +FEIGFLI LPFL+IDM+ Sbjct: 129 EKDLALFYRIRNLPNPKT----IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMV 184 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 V++++MAMGMMMLPPT ISLPFK++ FVL+DGW+LLV+ LV+SF+ Sbjct: 185 VSSVLMAMGMMMLPPTMISLPFKLLIFVLVDGWNLLVQRLVESFV 229 >gi|330839520|ref|YP_004414100.1| flagellar biosynthetic protein FliP [Selenomonas sputigena ATCC 35185] gi|329747284|gb|AEC00641.1| flagellar biosynthetic protein FliP [Selenomonas sputigena ATCC 35185] Length = 252 Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats. Identities = 95/224 (42%), Positives = 143/224 (63%), Gaps = 4/224 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 SL + A ++ + TILS+ P +L+M T F R ++V LR M +V Sbjct: 32 SLSVNVGEAAGPQDVATSLQILALLTILSLVPSILVMTTSFVRIVVVIGFLRNAMSTQNV 91 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PPN V+++L+LF+TFY+M P + + GIQP + QIT+ AI P FM TR Sbjct: 92 PPNQVVLALSLFLTFYIMQPYWSEANQQGIQPYLAGQITQEQAIDNTLAPLREFMFRQTR 151 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 E DL+LF++++ + + + LIP+F+ISEL+ +F+IGF+I +PF++IDMI Sbjct: 152 ESDLALFVNLSDAERPESQA----DVSTATLIPAFVISELKTAFQIGFMIYIPFIVIDMI 207 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 VA+ +M+MGMMMLPP ISLPFK++ FV++DGW LL+++L+ SF Sbjct: 208 VASTLMSMGMMMLPPVMISLPFKILLFVMVDGWHLLIKSLIMSF 251 >gi|253573534|ref|ZP_04850877.1| flagellar biosynthetic protein FliP [Paenibacillus sp. oral taxon 786 str. D14] gi|251847062|gb|EES75067.1| flagellar biosynthetic protein FliP [Paenibacillus sp. oral taxon 786 str. D14] Length = 255 Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats. Identities = 94/220 (42%), Positives = 147/220 (66%), Gaps = 4/220 (1%) Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85 + N + + T + + T+LSIAP +L+++T F R ++V +R+ +G +PPN Sbjct: 38 IGNSDSGGASGTTSLSILLMITVLSIAPAILVLMTSFTRIVVVLGFVRSSLGTQQMPPNQ 97 Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145 V+I LALF+T ++MSPTL E+ +QP + +IT+T A+ + A P FM ++TR KDL Sbjct: 98 VLIGLALFLTLFIMSPTLSTINEVAVQPYIKGEITQTEALDKAAVPMKKFMYSHTRTKDL 157 Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205 LFM + I +++P+F ISEL+ +F++GF+I +PFLIID++V+++ Sbjct: 158 QLFMGYTKMEKPK----SYEDIPLSVMVPAFAISELKTAFQMGFMIFIPFLIIDIVVSSV 213 Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MAMGMMMLPP ISLPFK++ FVL+DGW L+V++L+ SF Sbjct: 214 LMAMGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLLVSF 253 >gi|23499922|ref|NP_699362.1| flagellar biosynthesis protein FliP [Brucella suis 1330] gi|148558353|ref|YP_001257218.1| flagellar biosynthesis protein FliP [Brucella ovis ATCC 25840] gi|161620242|ref|YP_001594128.1| flagellar biosynthesis protein FliP [Brucella canis ATCC 23365] gi|163844351|ref|YP_001622006.1| flagellar biosynthesis protein FliP [Brucella suis ATCC 23445] gi|225628631|ref|ZP_03786665.1| flagellar biosynthetic protein FliP [Brucella ceti str. Cudo] gi|225686018|ref|YP_002733990.1| flagellar biosynthesis protein FliP [Brucella melitensis ATCC 23457] gi|254695296|ref|ZP_05157124.1| flagellar biosynthesis protein FliP [Brucella abortus bv. 3 str. Tulya] gi|254702582|ref|ZP_05164410.1| flagellar biosynthesis protein FliP [Brucella suis bv. 3 str. 686] gi|254706286|ref|ZP_05168114.1| flagellar biosynthesis protein FliP [Brucella pinnipedialis M163/99/10] gi|254711420|ref|ZP_05173231.1| flagellar biosynthesis protein FliP [Brucella pinnipedialis B2/94] gi|254712020|ref|ZP_05173831.1| flagellar biosynthesis protein FliP [Brucella ceti M644/93/1] gi|254715089|ref|ZP_05176900.1| flagellar biosynthesis protein FliP [Brucella ceti M13/05/1] gi|256014948|ref|YP_003104957.1| flagellar biosynthesis protein [Brucella microti CCM 4915] gi|256111937|ref|ZP_05452888.1| flagellar biosynthesis protein FliP [Brucella melitensis bv. 3 str. Ether] gi|256262859|ref|ZP_05465391.1| flagellar transporter FliP [Brucella melitensis bv. 2 str. 63/9] gi|260568510|ref|ZP_05838979.1| flagellar transporter FliP [Brucella suis bv. 4 str. 40] gi|261215665|ref|ZP_05929946.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 3 str. Tulya] gi|261216798|ref|ZP_05931079.1| flagellar biosynthetic protein FliP [Brucella ceti M13/05/1] gi|261313730|ref|ZP_05952927.1| flagellar biosynthetic protein FliP [Brucella pinnipedialis M163/99/10] gi|261319028|ref|ZP_05958225.1| flagellar biosynthetic protein FliP [Brucella pinnipedialis B2/94] gi|261319665|ref|ZP_05958862.1| flagellar biosynthetic protein FliP [Brucella ceti M644/93/1] gi|261753162|ref|ZP_05996871.1| flagellar biosynthetic protein FliP [Brucella suis bv. 3 str. 686] gi|265993384|ref|ZP_06105941.1| flagellar biosynthetic protein FliP [Brucella melitensis bv. 3 str. Ether] gi|23463499|gb|AAN33367.1| flagellar biosynthetic protein FliP [Brucella suis 1330] gi|148369638|gb|ABQ62510.1| flagellar biosynthetic protein FliP [Brucella ovis ATCC 25840] gi|161337053|gb|ABX63357.1| flagellar biosynthetic protein FliP [Brucella canis ATCC 23365] gi|163675074|gb|ABY39184.1| flagellar biosynthetic protein FliP [Brucella suis ATCC 23445] gi|225616477|gb|EEH13525.1| flagellar biosynthetic protein FliP [Brucella ceti str. Cudo] gi|225642123|gb|ACO02036.1| flagellar biosynthetic protein FliP [Brucella melitensis ATCC 23457] gi|255997608|gb|ACU49295.1| flagellar biosynthesis protein [Brucella microti CCM 4915] gi|260155175|gb|EEW90256.1| flagellar transporter FliP [Brucella suis bv. 4 str. 40] gi|260917272|gb|EEX84133.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 3 str. Tulya] gi|260921887|gb|EEX88455.1| flagellar biosynthetic protein FliP [Brucella ceti M13/05/1] gi|261292355|gb|EEX95851.1| flagellar biosynthetic protein FliP [Brucella ceti M644/93/1] gi|261298251|gb|EEY01748.1| flagellar biosynthetic protein FliP [Brucella pinnipedialis B2/94] gi|261302756|gb|EEY06253.1| flagellar biosynthetic protein FliP [Brucella pinnipedialis M163/99/10] gi|261742915|gb|EEY30841.1| flagellar biosynthetic protein FliP [Brucella suis bv. 3 str. 686] gi|262764254|gb|EEZ10286.1| flagellar biosynthetic protein FliP [Brucella melitensis bv. 3 str. Ether] gi|263092694|gb|EEZ16903.1| flagellar transporter FliP [Brucella melitensis bv. 2 str. 63/9] gi|326410341|gb|ADZ67405.1| flagellar biosynthesis protein FliP [Brucella melitensis M28] gi|326553633|gb|ADZ88272.1| flagellar biosynthesis protein FliP [Brucella melitensis M5-90] Length = 246 Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats. Identities = 130/240 (54%), Positives = 175/240 (72%), Gaps = 4/240 (1%) Query: 7 FALFLVTPELVFAKSSLHDVMNIPAD-LSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65 L L A+ +L +PA + S IV+ FG+ T+LSIAP LLIMVT F RF Sbjct: 9 VILTLALTVSAQAQQALPLDKLLPAGSGAASGQIVQLFGLLTVLSIAPGLLIMVTSFTRF 68 Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 I FS+LR+G+G+ + P ++V+ISLALFMTFYVM+P DR+ G+QPLM N+IT+ A Sbjct: 69 AIAFSLLRSGLGLQTAPASMVMISLALFMTFYVMAPAFDRAWNNGVQPLMRNEITQEAAF 128 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185 +++PF FM R+KDL LF D+A S R +D +++R+L+P+FMISELRR F Sbjct: 129 GEISQPFREFMMAQVRDKDLRLFEDLADPSFRTSDDGI---VDFRVLVPAFMISELRRGF 185 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 EIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW++LV +L++SF Sbjct: 186 EIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245 >gi|66735095|gb|AAY53788.1| flagella export apparatus [Campylobacter jejuni] Length = 233 Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats. Identities = 102/225 (45%), Positives = 155/225 (68%), Gaps = 4/225 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 +++ ++ P + + + TIL++AP ++ ++T F R I+VFS LR MG S+ Sbjct: 12 TVNLSLSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSM 71 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PPN ++++LAL +TF++M P +S GI+P ++ +I A + A+PF FM NTR Sbjct: 72 PPNTILVTLALILTFFIMEPVATKSYNEGIKPYLSEKIGYEEAFIKGAKPFKDFMLKNTR 131 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 EKDL+LF + + + T D + +L+P+FMISEL+ +FEIGFLI PFL+IDM+ Sbjct: 132 EKDLALFYRIRNLPNPKT----IDDVPLTVLVPAFMISELKTAFEIGFLIYQPFLVIDMV 187 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 V++++MAMGMMMLPPT ISLPFK++ FVL+DGW+LLV+ LV+SF+ Sbjct: 188 VSSVLMAMGMMMLPPTMISLPFKLLIFVLVDGWNLLVQRLVESFV 232 >gi|53717669|ref|YP_106655.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei K96243] gi|52208083|emb|CAH34013.1| flagellar biosynthetic protein [Burkholderia pseudomallei K96243] Length = 253 Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats. Identities = 93/216 (43%), Positives = 140/216 (64%), Gaps = 4/216 (1%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P + + V+T + T+LS P +L+M+T F R IIV S+LR +G S PP+ V++ Sbjct: 41 PNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQAIGTASTPPSQVLVG 100 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 LALF+T +VMSP LDR+ +P + A+QR PF FM TRE DL+LF Sbjct: 101 LALFLTLFVMSPVLDRAYNDAYKPFSEGTLQMDQAVQRGTAPFKAFMLKQTRETDLALFA 160 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 ++ + + + + +L+P+F+ SEL+ F+IGF I +PFLIIDM+VA+++M+M Sbjct: 161 KIS----KAAPMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSM 216 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMM+ P ++SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 217 GMMMVSPATVSLPFKLMLFVLVDGWQLLIGSLAQSF 252 >gi|283954390|ref|ZP_06371910.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp. jejuni 414] gi|283794007|gb|EFC32756.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp. jejuni 414] Length = 233 Score = 208 bits (530), Expect = 6e-52, Method: Composition-based stats. Identities = 104/225 (46%), Positives = 155/225 (68%), Gaps = 4/225 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 +++ ++ P + + + TIL++AP ++ ++T F R I+VFS LR MG S+ Sbjct: 12 TVNLSLSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSM 71 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PPN ++++LAL +TF++M P +S GI+P + QI A + A+PF FM NTR Sbjct: 72 PPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEQIGYEEAFVKGAKPFKDFMLKNTR 131 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 EKDL+LF + + + T D + +L+P+FMISEL+ +FEIGFLI LPFL+IDM+ Sbjct: 132 EKDLALFYRIRNLPNPKT----IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMV 187 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 V++++MAMGMMMLPPT ISLPFK++ FVL+DGW+LLV+ LV+SF+ Sbjct: 188 VSSVLMAMGMMMLPPTMISLPFKLLIFVLVDGWNLLVQRLVESFV 232 >gi|197104388|ref|YP_002129765.1| flagellar biosynthesis protein FliP [Phenylobacterium zucineum HLK1] gi|196477808|gb|ACG77336.1| flagellar biosynthesis protein FliP [Phenylobacterium zucineum HLK1] Length = 245 Score = 208 bits (530), Expect = 6e-52, Method: Composition-based stats. Identities = 99/219 (45%), Positives = 151/219 (68%), Gaps = 4/219 (1%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 +++ ++ +V+ G+ T+LS+AP ++IM T F R ++V S+LRT +G+ PPN V Sbjct: 24 IDLGTGAGLTERVVQLVGLLTVLSLAPSIVIMTTSFVRIVVVLSLLRTALGVQQSPPNAV 83 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 IISLALF+T VM PT +RS + G++PL++ QI A P FM + +DL+ Sbjct: 84 IISLALFLTAIVMGPTFERSYQEGVKPLLDQQIELPQAFDAAGAPVKTFMLSQVDPEDLA 143 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 LF+ ++ T + R++ P+FMISEL+R+FEIGFL+ +PFL+ID++VA+++ Sbjct: 144 LFVRLSRIPRPATM----EDTPLRVVTPAFMISELKRAFEIGFLLFIPFLVIDLVVASVL 199 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+MGMMMLPP ++SLPFK+IFFVL+DGW L+ +LV+SF Sbjct: 200 MSMGMMMLPPVTVSLPFKLIFFVLVDGWRLVAGSLVESF 238 >gi|315928248|gb|EFV07564.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 233 Score = 208 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 103/225 (45%), Positives = 155/225 (68%), Gaps = 4/225 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 +++ ++ P + + + TIL++AP ++ ++T F R I+VFS LR MG S+ Sbjct: 12 TVNLSLSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSM 71 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PPN ++++LAL +TF++M P +S GI+P + +I A + A+PF FM NTR Sbjct: 72 PPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNTR 131 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 EKDL+LF + + + T D + +L+P+FMISEL+ +FEIGFLI LPFL+IDM+ Sbjct: 132 EKDLALFYRIRNLPNPKT----IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMV 187 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 V++++MAMGMMMLPPT ISLPFK++ FVL+DGW+LLV+ LV+SF+ Sbjct: 188 VSSVLMAMGMMMLPPTMISLPFKLLIFVLVDGWNLLVQRLVESFV 232 >gi|300854220|ref|YP_003779204.1| flagellar biosynthesis protein FliP [Clostridium ljungdahlii DSM 13528] gi|300434335|gb|ADK14102.1| flagellar biosynthesis protein FliP [Clostridium ljungdahlii DSM 13528] Length = 266 Score = 208 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 98/255 (38%), Positives = 149/255 (58%), Gaps = 13/255 (5%) Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPA-----------DLSISTWIVRTFGIFTILS 50 I F + + V+A M IP ++ T+++ Sbjct: 13 ISILIFVILVFKAHSVYAAPDASQTMPIPNINVSMDNAGTSTPQQYVQNIKLLIFLTVIT 72 Query: 51 IAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMG 110 + P ++M+T F R I+VF LR+ MG PPN ++I LALFMT ++M P + Sbjct: 73 LLPSFVMMMTSFVRIIVVFGFLRSAMGTQQSPPNSILIGLALFMTVFIMYPVYSKMNTNA 132 Query: 111 IQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYR 170 I+P M N+IT+ AI A+P FM T +KDL LF+D A +++ T + Sbjct: 133 IEPYMQNKITQQQAIDEGAKPIRSFMLKQTYKKDLQLFIDQAKLNYKVT--ADGQNAPLY 190 Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230 +++P++MISEL+ +FEIGFLI +PF++IDM+V++++MAMGM MLPPT ISL FK++ FV+ Sbjct: 191 VVVPAYMISELKTAFEIGFLIYIPFMVIDMVVSSVLMAMGMFMLPPTMISLAFKLLLFVM 250 Query: 231 IDGWSLLVENLVKSF 245 +DGW LLV++L+ SF Sbjct: 251 VDGWYLLVKSLIVSF 265 >gi|332702322|ref|ZP_08422410.1| flagellar biosynthetic protein FliP [Desulfovibrio africanus str. Walvis Bay] gi|332552471|gb|EGJ49515.1| flagellar biosynthetic protein FliP [Desulfovibrio africanus str. Walvis Bay] Length = 263 Score = 208 bits (529), Expect = 6e-52, Method: Composition-based stats. Identities = 99/235 (42%), Positives = 143/235 (60%), Gaps = 7/235 (2%) Query: 14 PELVFAKSSLHDVMNIPADLSISTWI---VRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70 P L +A+ H M+I + + + T+LS+AP +++ +T F R IIVF Sbjct: 31 PGLAWAQDIPHFSMSISGGQPEPEQVSLLLEIIFLLTVLSLAPAIIMTMTSFTRIIIVFH 90 Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130 LR +G +PP+ ++ISLA+FMTF +M PT +QP M +I A+ + Sbjct: 91 FLRQALGTQQMPPSQILISLAIFMTFVIMMPTAMAINNTALQPYMEERIGFKEALDNAQK 150 Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190 P FM +TREKDLS+F +A + + + +L +F+ISEL+ F IGFL Sbjct: 151 PLREFMFKHTREKDLSVFYSIAKIERPD----NREQVPTMLLTAAFVISELKTGFIIGFL 206 Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 I +PFLI+DM+VA+I++AMGMMMLPP ISLPFKV+ FV++DGW+LL +LV SF Sbjct: 207 IYIPFLILDMVVASILLAMGMMMLPPVMISLPFKVLLFVMVDGWNLLTASLVNSF 261 >gi|50120649|ref|YP_049816.1| flagellar biosynthesis protein FliP [Pectobacterium atrosepticum SCRI1043] gi|49611175|emb|CAG74621.1| flagellar biosynthetic protein [Pectobacterium atrosepticum SCRI1043] Length = 258 Score = 208 bits (529), Expect = 7e-52, Method: Composition-based stats. Identities = 103/244 (42%), Positives = 151/244 (61%), Gaps = 4/244 (1%) Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61 +RY L V+A+ +P T V+T T L+ P L+M+T Sbjct: 17 LRYGLAIGLLFMAPSVWAQLPGIVTQPLPNGGQSWTLSVQTLVFLTSLTFLPAALLMMTS 76 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F R IIV S+LR +G + PPN V++ L LF+TF+VMSP L+R + P +QI+ Sbjct: 77 FTRIIIVLSLLRNALGTPTAPPNQVLLGLTLFLTFFVMSPVLNRVYDEAYLPFSQDQISM 136 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 AI+R AEP FM TRE DL+LF +A +I + + R+L+P+F+ SEL Sbjct: 137 EVAIERGAEPLREFMLRQTRETDLALFTRLAEIP----EIQGPEAVPMRVLLPAFVTSEL 192 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 + +F+IGF + +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L Sbjct: 193 KTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSL 252 Query: 242 VKSF 245 +SF Sbjct: 253 AQSF 256 >gi|167834870|ref|ZP_02461753.1| flagellar biosynthesis protein FliP [Burkholderia thailandensis MSMB43] Length = 253 Score = 208 bits (529), Expect = 7e-52, Method: Composition-based stats. Identities = 95/216 (43%), Positives = 141/216 (65%), Gaps = 4/216 (1%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P + + V+T + T+LS P +L+M+T F R IIV S+LR +G S PPN V++ Sbjct: 41 PNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQALGTASTPPNQVLVG 100 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 LALF+T +VMSP LDR+ +P + A+QR A PF FM TRE DL+LF Sbjct: 101 LALFLTLFVMSPVLDRAYADAYKPFSEGTLQMDQAVQRGAAPFKTFMLKQTRETDLALFA 160 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 ++ + + + + +L+P+F+ SEL+ F+IGF I +PFLIIDM+VA+++M+M Sbjct: 161 KIS----KAAPMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSM 216 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMM+ P ++SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 217 GMMMVSPATVSLPFKLMLFVLVDGWQLLIGSLAQSF 252 >gi|167717397|ref|ZP_02400633.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei DM98] Length = 244 Score = 208 bits (529), Expect = 7e-52, Method: Composition-based stats. Identities = 94/216 (43%), Positives = 140/216 (64%), Gaps = 4/216 (1%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P + + V+T + T+LS P +L+M+T F R IIV S+LR +G S PPN V++ Sbjct: 32 PNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQAIGTASTPPNQVLVG 91 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 LALF+T +VMSP LDR+ +P + A+QR PF FM TRE DL+LF Sbjct: 92 LALFLTLFVMSPVLDRAYNDAYKPFSEGTLQMDQAVQRGTAPFKAFMLKQTRETDLALFA 151 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 ++ + + + + +L+P+F+ SEL+ F+IGF I +PFLIIDM+VA+++M+M Sbjct: 152 KIS----KAAPMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSM 207 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMM+ P ++SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 208 GMMMVSPATVSLPFKLMLFVLVDGWQLLIGSLAQSF 243 >gi|59712449|ref|YP_205225.1| flagellar biosynthesis protein FliP [Vibrio fischeri ES114] gi|197336177|ref|YP_002156668.1| flagellar biosynthesis protein [Vibrio fischeri MJ11] gi|59480550|gb|AAW86337.1| flagellar biosynthesis protein FliP [Vibrio fischeri ES114] gi|197317667|gb|ACH67114.1| flagellar biosynthesis protein [Vibrio fischeri MJ11] Length = 289 Score = 208 bits (529), Expect = 7e-52, Method: Composition-based stats. Identities = 88/219 (40%), Positives = 135/219 (61%), Gaps = 5/219 (2%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 + ++ G+ T+L P ++I++T F R ++V SILR MG+ P N V Sbjct: 74 TTNANGGEDYSVNLQILGLMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 133 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 II +A+F+TF++M+P D+ IQP +N +IT A P FM TR KDL Sbjct: 134 IIGIAMFLTFFIMAPVFDKVNNTAIQPYINEEITAREAFDVAQVPMKEFMLAQTRVKDLE 193 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 F++M+ N + + ++IP+F+ SEL+ +F+IGF++ LPFLIID++VA+++ Sbjct: 194 TFVNMSGVEAEN-----PEDVPITVVIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 248 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 249 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287 >gi|170751431|ref|YP_001757691.1| flagellar biosynthetic protein FliP [Methylobacterium radiotolerans JCM 2831] gi|170657953|gb|ACB27008.1| flagellar biosynthetic protein FliP [Methylobacterium radiotolerans JCM 2831] Length = 255 Score = 208 bits (529), Expect = 7e-52, Method: Composition-based stats. Identities = 98/215 (45%), Positives = 150/215 (69%), Gaps = 4/215 (1%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 + ++ + T+L++AP +L+M T F R ++V SILR+ +G + PP V++SL Sbjct: 43 GAGGTTERALQLVALITVLAVAPSVLVMATAFTRIVVVLSILRSALGTQTAPPTAVLVSL 102 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 ALF+T +VM+PT + GI+PL+ +IT+ A +R + PF FM N REKDL LF+D Sbjct: 103 ALFLTAFVMAPTGRAAYSAGIEPLIAGRITQAQAFERASAPFKTFMLRNVREKDLKLFLD 162 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 +A + + I+ P+FMISELRR+FEIGFL+ +PFLIID++VA+++MA+G Sbjct: 163 LAKVPAPK----GPEDVGLEIVTPAFMISELRRAFEIGFLLFIPFLIIDLVVASVLMAVG 218 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMM+PP +++LPFK+IFFVL+DGW+L+ +LV+S+ Sbjct: 219 MMMVPPATVALPFKLIFFVLVDGWTLVAGSLVQSY 253 >gi|20807873|ref|NP_623044.1| flagellar biosynthesis protein FliP [Thermoanaerobacter tengcongensis MB4] gi|20516437|gb|AAM24648.1| Flagellar biosynthesis/type III secretory pathway protein [Thermoanaerobacter tengcongensis MB4] Length = 221 Score = 208 bits (529), Expect = 7e-52, Method: Composition-based stats. Identities = 95/223 (42%), Positives = 151/223 (67%), Gaps = 5/223 (2%) Query: 23 LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82 L ++++ S + ++ + T+L++AP +LIM+T F R +IV + LR +G+ +P Sbjct: 3 LSNLVSSVTSPSNLSTSLQIVLLLTVLTLAPSILIMMTSFTRIVIVLAFLRNALGLQQMP 62 Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142 PN V+I LALF+TFY+M+P I+P + QI + A QR +P FM TR+ Sbjct: 63 PNQVLIGLALFLTFYIMAPVGYDINNNAIKPYVEGQINQYEAYQRAIKPLKNFMLRQTRQ 122 Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202 DL+LF+++A + K + + R++IP+F+ISEL+ +FEIGF+I +PFL+ID+IV Sbjct: 123 NDLALFVNLAKIK-----VDKVEDLPMRVVIPAFIISELKTAFEIGFIIYIPFLVIDIIV 177 Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 A+++M+MGM MLPP ISLPFKV+ F+L+DGW+L+V++L+ F Sbjct: 178 ASVLMSMGMFMLPPVLISLPFKVLLFILVDGWNLVVKSLILGF 220 >gi|254720604|ref|ZP_05182415.1| flagellar biosynthesis protein FliP [Brucella sp. 83/13] gi|265985644|ref|ZP_06098379.1| flagellar biosynthetic protein FliP [Brucella sp. 83/13] gi|306838566|ref|ZP_07471403.1| flagellar biosynthetic protein FliP [Brucella sp. NF 2653] gi|264664236|gb|EEZ34497.1| flagellar biosynthetic protein FliP [Brucella sp. 83/13] gi|306406352|gb|EFM62594.1| flagellar biosynthetic protein FliP [Brucella sp. NF 2653] Length = 246 Score = 208 bits (529), Expect = 7e-52, Method: Composition-based stats. Identities = 130/240 (54%), Positives = 174/240 (72%), Gaps = 4/240 (1%) Query: 7 FALFLVTPELVFAKSSLHDVMNIPAD-LSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65 L L A+ +L +PA + S IV+ FG+ T+LSIAP LLIMVT F RF Sbjct: 9 VILTLALTVSAEAQQALTLDKLLPAGSGAASGQIVQLFGLLTVLSIAPGLLIMVTSFTRF 68 Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 I FS+LR+G+G+ + P ++V+ISLALFMTFYVM+P DR+ G+QPLM N+IT+ A Sbjct: 69 AIAFSLLRSGLGLQTAPASMVMISLALFMTFYVMAPAFDRAWNNGVQPLMRNEITQEAAF 128 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185 +++PF FM R+KDL LF D+A S R D +++R+L+P+FMISELRR F Sbjct: 129 GEISQPFREFMMAQVRDKDLRLFEDLADPSFRTGDDGI---VDFRVLVPAFMISELRRGF 185 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 EIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW++LV +L++SF Sbjct: 186 EIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245 >gi|253688962|ref|YP_003018152.1| flagellar biosynthetic protein FliP [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755540|gb|ACT13616.1| flagellar biosynthetic protein FliP [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 258 Score = 207 bits (528), Expect = 7e-52, Method: Composition-based stats. Identities = 105/244 (43%), Positives = 152/244 (62%), Gaps = 4/244 (1%) Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61 +RY L+ V+A+ +P T V+T T L+ P L+M+T Sbjct: 17 LRYGLAISLLLLAPSVWAQLPGIVTQPLPNGGQSWTLSVQTLVFLTSLTFIPAALLMMTS 76 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F R IIV S+LR +G + PPN V++ L LF+TF+VMSP L+R E P +QI+ Sbjct: 77 FTRIIIVLSLLRNALGTPTAPPNQVLLGLTLFLTFFVMSPVLNRVYEEAYLPFSQDQISM 136 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 AI+R AEP FM TRE DL+LF +A +I + + R+L+P+F+ SEL Sbjct: 137 EVAIERGAEPVREFMLRQTRETDLALFTRLAEIP----EIQGPEAVPMRVLLPAFVTSEL 192 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 + +F+IGF I +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L Sbjct: 193 KTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSL 252 Query: 242 VKSF 245 +SF Sbjct: 253 AQSF 256 >gi|462610|sp|P34200|FLIP_PECCC RecName: Full=Flagellar biosynthetic protein fliP; AltName: Full=Flagellar biosynthetic protein mopC gi|296055|emb|CAA51476.1| mopC [Pectobacterium carotovorum] Length = 258 Score = 207 bits (528), Expect = 7e-52, Method: Composition-based stats. Identities = 103/243 (42%), Positives = 151/243 (62%), Gaps = 4/243 (1%) Query: 3 RYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCF 62 RY L V+A+ +P T V+T + T L+ P L+M+T F Sbjct: 18 RYGLAIGLLFMAPSVWAQLPGIVTQPLPNGGQSWTLSVQTLVLLTSLTFLPAALLMMTSF 77 Query: 63 PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122 R IIV S+LR +G + PPN V++ L LF+TF+VMSP L+R + P +QI+ Sbjct: 78 TRIIIVLSLLRNALGTPTAPPNQVLLGLTLFLTFFVMSPVLNRVYDEAYLPFSQDQISME 137 Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182 AI+R AEP FM TRE DL+LF +A +I + + R+L+P+F+ SEL+ Sbjct: 138 VAIERGAEPVREFMLRQTRETDLALFTRLAEIP----EIQGPEAVPMRVLLPAFVTSELK 193 Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242 +F+IGF + +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L Sbjct: 194 TAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLA 253 Query: 243 KSF 245 +SF Sbjct: 254 QSF 256 >gi|229544408|ref|ZP_04433466.1| flagellar biosynthetic protein FliP [Bacillus coagulans 36D1] gi|229324893|gb|EEN90570.1| flagellar biosynthetic protein FliP [Bacillus coagulans 36D1] Length = 221 Score = 207 bits (528), Expect = 8e-52, Method: Composition-based stats. Identities = 95/217 (43%), Positives = 145/217 (66%), Gaps = 4/217 (1%) Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88 + V+ + T+LS+AP +LI++T F R +IV S +RT +G + PPN VI+ Sbjct: 9 SSTSGDTVSLSVKILLLMTVLSLAPSILILLTSFTRIVIVLSFVRTSLGTQTAPPNQVIV 68 Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148 LALF+TF++M+PT + + + PL ++++T A + +PF FM TR+KDL LF Sbjct: 69 GLALFLTFFIMAPTFQQVNKQALTPLFHDKLTLEEAYDKAQKPFKEFMAKETRQKDLQLF 128 Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208 +D AH I L+P+F ISEL+ +F++GF+I +PFL+IDM+VA+++M+ Sbjct: 129 LDYAHKKQPK----SVQDIPMTTLVPAFTISELKTAFQMGFMIFIPFLVIDMVVASVLMS 184 Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MGMMMLPP ISLPFK++ FVL+DGW L+V++L++SF Sbjct: 185 MGMMMLPPVMISLPFKILLFVLVDGWYLVVKSLLESF 221 >gi|55977145|gb|AAV68366.1| FliP [Herminiimonas arsenicoxydans] Length = 271 Score = 207 bits (528), Expect = 8e-52, Method: Composition-based stats. Identities = 92/233 (39%), Positives = 143/233 (61%), Gaps = 6/233 (2%) Query: 15 ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIA--PILLIMVTCFPRFIIVFSIL 72 + ++ L + + P T+ + + + ++ P +L+M+T F R IIV S+L Sbjct: 42 AAMAQQAGLPALTSTPTPGGGQTYSLSLQTLLLLTGLSFLPAVLLMMTSFTRIIIVLSLL 101 Query: 73 RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132 R +G S PPN VII L+LF+T +VMSP LD+ QP N+I A+ + P Sbjct: 102 RQALGTQSSPPNQVIIGLSLFLTLFVMSPVLDKIYVDAYQPFSANKIQMGEALDKAVAPL 161 Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192 FM TRE DL+L++ M+ ++ + I RIL+P+F+ SEL+ +F+I F I Sbjct: 162 KTFMIKQTRESDLALYVKMSKGP----ELQGPEDIPLRILVPAFITSELKTAFQISFAIF 217 Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PFLIIDM+VA+++M+MGMMM+ P ++LPFK++ FVL+DGW LL+ +L +SF Sbjct: 218 IPFLIIDMVVASVLMSMGMMMVSPAIVALPFKLMLFVLVDGWQLLIGSLAQSF 270 >gi|254478865|ref|ZP_05092229.1| flagellar biosynthetic protein FliP [Carboxydibrachium pacificum DSM 12653] gi|214035178|gb|EEB75888.1| flagellar biosynthetic protein FliP [Carboxydibrachium pacificum DSM 12653] Length = 221 Score = 207 bits (528), Expect = 8e-52, Method: Composition-based stats. Identities = 94/223 (42%), Positives = 150/223 (67%), Gaps = 5/223 (2%) Query: 23 LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82 L ++++ S + ++ + T+L++AP +LIM+T F R +IV + LR +G+ +P Sbjct: 3 LSNLVSSVTSPSNLSTSLQIVLLLTVLTLAPSILIMMTSFTRIVIVLAFLRNALGLQQMP 62 Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142 PN V+I LALF+TFY+M+P I+P + QI + A +R +P FM TR+ Sbjct: 63 PNQVLIGLALFLTFYIMAPVGYDINNNAIKPYVEGQINQYEAYERAIKPLKSFMLRQTRQ 122 Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202 DL+LF+++A K + + R++IP+F+ISEL+ +FEIGF+I +PFL+ID+IV Sbjct: 123 NDLALFVNLAKIK-----ADKVEDLPMRVVIPAFIISELKTAFEIGFIIYIPFLVIDIIV 177 Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 A+++M+MGM MLPP ISLPFKV+ F+L+DGW+L+V++L+ F Sbjct: 178 ASVLMSMGMFMLPPVLISLPFKVLLFILVDGWNLVVKSLILGF 220 >gi|209522296|ref|ZP_03270923.1| flagellar biosynthetic protein FliP [Burkholderia sp. H160] gi|209497272|gb|EDZ97500.1| flagellar biosynthetic protein FliP [Burkholderia sp. H160] Length = 273 Score = 207 bits (528), Expect = 8e-52, Method: Composition-based stats. Identities = 96/235 (40%), Positives = 146/235 (62%), Gaps = 7/235 (2%) Query: 15 ELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71 L FA+++ P + + V+T + T+LS P +++M+T F R +IV S+ Sbjct: 43 TLSFAQTAGLPAFTTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTRIVIVLSL 102 Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131 LR +G + PPN V++ LALF+T +VMSP LD++ G +P + A+ R P Sbjct: 103 LRQALGTTTTPPNQVLVGLALFLTLFVMSPVLDKAYNEGYKPFSEGTMPMDQAVSRGVAP 162 Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191 F FM TRE DL+LF ++H + + + +L+PSF+ SEL+ F IGF I Sbjct: 163 FKTFMLRQTRESDLALFARISH----AAPMQGPEDVPLSLLVPSFVTSELKTGFTIGFTI 218 Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +PFLIIDM+VA+++M+MGMMM+ P +ISLPFK++ FVL+DGW LL+ +L +SF+ Sbjct: 219 FIPFLIIDMVVASVLMSMGMMMVSPATISLPFKLMLFVLVDGWQLLLGSLAQSFV 273 >gi|302343742|ref|YP_003808271.1| flagellar biosynthetic protein FliP [Desulfarculus baarsii DSM 2075] gi|301640355|gb|ADK85677.1| flagellar biosynthetic protein FliP [Desulfarculus baarsii DSM 2075] Length = 258 Score = 207 bits (528), Expect = 8e-52, Method: Composition-based stats. Identities = 90/209 (43%), Positives = 142/209 (67%), Gaps = 4/209 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + ++ + T+L++AP +L+M T F R + FS+LR +G VPP +I+ L+LF+TF Sbjct: 53 STALQIVILLTVLTLAPAILVMTTSFVRIAVSFSLLRNALGAPQVPPTQIIVGLSLFLTF 112 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 ++M+P D+ + ++P ++ I+++ + A+P FM TR+KDL LFM +A Sbjct: 113 FIMAPVFDQVHDKALKPYLDGAISQSAFFEEAAKPMREFMLKQTRKKDLGLFMKIAGEDR 172 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 + + L+P+F+ISELR +FEIGFL+ +PFL+IDM+VA+++++MGMMMLPP Sbjct: 173 PRNE----QDVTMSALVPAFVISELRTAFEIGFLLYVPFLVIDMVVASVLLSMGMMMLPP 228 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLPFK++ FVL+DGW LLV +LV+SF Sbjct: 229 VMISLPFKLMLFVLVDGWYLLVGSLVRSF 257 >gi|221069288|ref|ZP_03545393.1| flagellar biosynthetic protein FliP [Comamonas testosteroni KF-1] gi|220714311|gb|EED69679.1| flagellar biosynthetic protein FliP [Comamonas testosteroni KF-1] Length = 249 Score = 207 bits (528), Expect = 8e-52, Method: Composition-based stats. Identities = 93/227 (40%), Positives = 143/227 (62%), Gaps = 4/227 (1%) Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 A +SL ++ A + + ++T FT LS P +L+++T F R +IV S+LR +G Sbjct: 25 APASLPLLVGQGAGGTSYSVPIQTLLFFTALSFLPAILLLMTGFTRIVIVLSLLRQALGT 84 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 S PPN V+I L+LF+T +VM PTLD+ + P N I+ AI++ P FM Sbjct: 85 QSAPPNQVVIGLSLFLTMFVMGPTLDKVYQDAYLPYTQNSISFEQAIEKAEAPMRGFMLK 144 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 TR+ D +LF +A T + R+L+P+F+ SEL+ +F+IGF+I +PFLII Sbjct: 145 QTRQSDFALFKRLAKLDANVT----AETAPLRVLVPAFVTSELKTAFQIGFMIFIPFLII 200 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 DM+V++I+M++GMMML P ++LPFK++ FVL DGW+L++ +L SF Sbjct: 201 DMVVSSILMSLGMMMLSPVLVALPFKLMLFVLADGWNLIIGSLAASF 247 >gi|205356321|ref|ZP_03223086.1| putative lipoprotein [Campylobacter jejuni subsp. jejuni CG8421] gi|205345706|gb|EDZ32344.1| putative lipoprotein [Campylobacter jejuni subsp. jejuni CG8421] Length = 233 Score = 207 bits (528), Expect = 8e-52, Method: Composition-based stats. Identities = 103/225 (45%), Positives = 154/225 (68%), Gaps = 4/225 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 +++ ++ P + + + TIL +AP ++ ++T F R I+VFS LR MG S+ Sbjct: 12 TVNLNLSAPNTPNQLVTTLNIVIVLTILVLAPSIVFVMTSFLRLIVVFSFLRQAMGTQSM 71 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PPN ++++LAL +TF++M P +S GI+P + +I A + A+PF FM NTR Sbjct: 72 PPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNTR 131 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 EKDL+LF + + + T D + +L+P+FMISEL+ +FEIGFLI LPFL+IDM+ Sbjct: 132 EKDLALFYRIRNLPNPKT----IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMV 187 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 V++++MAMGMMMLPPT ISLPFK++ FVL+DGW+LLV+ LV+SF+ Sbjct: 188 VSSVLMAMGMMMLPPTMISLPFKLLIFVLVDGWNLLVQRLVESFV 232 >gi|74317628|ref|YP_315368.1| flagellar biosynthesis protein FliP [Thiobacillus denitrificans ATCC 25259] gi|74057123|gb|AAZ97563.1| flagellar transport protein FliP [Thiobacillus denitrificans ATCC 25259] Length = 253 Score = 207 bits (528), Expect = 8e-52, Method: Composition-based stats. Identities = 102/235 (43%), Positives = 146/235 (62%), Gaps = 7/235 (2%) Query: 14 PELVFAKS-SLHDVMNIPADLSISTWIVRTFGIFTILSIA--PILLIMVTCFPRFIIVFS 70 P A+S L + P+ T+ + + + S++ P L+M+T F R IIV S Sbjct: 22 PTFALAQSAGLPAFTSTPSGGGGQTYTLSLQTLLLLTSLSFLPAALLMMTSFTRIIIVLS 81 Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130 +LR +G S PPN V+I LALF+T +VM PT D+ QPL N+I A+ + A Sbjct: 82 LLRHALGTQSSPPNQVLIGLALFLTLFVMGPTFDKIYVEAYQPLAENRIQMQEALDKGAV 141 Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190 P FM TRE DL+LF+ M+ S T I R+LIP+++ SEL+ +F+IGF Sbjct: 142 PLRAFMLKQTRESDLALFVKMSRSPAPKTAA----DIPMRVLIPAYITSELKTAFQIGFA 197 Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 + +PFLIIDM+VA+I+MAMGMMM+ P ++LPFK+I FVL+DGW+LL+ +L +SF Sbjct: 198 VFIPFLIIDMVVASILMAMGMMMVSPAIVALPFKIILFVLVDGWNLLLGSLAQSF 252 >gi|83944189|ref|ZP_00956645.1| flagellar biosynthesis protein [Sulfitobacter sp. EE-36] gi|83955110|ref|ZP_00963766.1| flagellar biosynthesis protein [Sulfitobacter sp. NAS-14.1] gi|83840439|gb|EAP79612.1| flagellar biosynthesis protein [Sulfitobacter sp. NAS-14.1] gi|83845056|gb|EAP82937.1| flagellar biosynthesis protein [Sulfitobacter sp. EE-36] Length = 274 Score = 207 bits (528), Expect = 8e-52, Method: Composition-based stats. Identities = 114/221 (51%), Positives = 159/221 (71%), Gaps = 1/221 (0%) Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85 S+S +++ F I T+LS+AP LL+MVT F RF+IVFS+LR +G+ PPN+ Sbjct: 53 TPGTDEGASLSGRLIQLFAIITVLSVAPGLLVMVTSFTRFVIVFSMLRLALGLNQTPPNI 112 Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145 V+ ++ALFMTF+VM P + + E G+ PLM N I E A++ ++EPF+ FM NTR+KDL Sbjct: 113 VLNAMALFMTFFVMQPVFEDAWEGGLVPLMENAIIEEQAVRNISEPFYNFMLVNTRDKDL 172 Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205 LF D+A + +D +R+L+PSFMISELRR+F IGFLI LPF+ ID+IVA++ Sbjct: 173 QLFTDIADEASPPSDGPAA-LPSWRVLVPSFMISELRRAFTIGFLIYLPFIAIDLIVASV 231 Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +M+ GMMMLPP +SLPFKVIFFVLIDGW +L +L++S++ Sbjct: 232 LMSAGMMMLPPVLVSLPFKVIFFVLIDGWYMLAGSLIQSYV 272 >gi|329890585|ref|ZP_08268928.1| flagellar biosynthetic protein FliP [Brevundimonas diminuta ATCC 11568] gi|328845886|gb|EGF95450.1| flagellar biosynthetic protein FliP [Brevundimonas diminuta ATCC 11568] Length = 238 Score = 207 bits (528), Expect = 9e-52, Method: Composition-based stats. Identities = 95/228 (41%), Positives = 148/228 (64%), Gaps = 4/228 (1%) Query: 18 FAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMG 77 A+ +++ + ++ +V+ G+ T+LS+AP ++IM T F R ++V S+LRT +G Sbjct: 8 AAQGGSAINIDLGSGAGLTQRVVQLVGLMTVLSLAPSIVIMTTSFVRIVVVLSLLRTALG 67 Query: 78 MGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMR 137 M PPN V++SLALF++ VM PT + + GI+PLM+ Q+ A +EP FM Sbjct: 68 MQQSPPNAVLVSLALFLSAIVMGPTWQDAYDSGIRPLMDQQMELPQAFDAASEPVKTFML 127 Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197 + DL+LF ++ + R++ P+FMISEL+ +F IGFL+ +PFL+ Sbjct: 128 AQVKPDDLALFTRLSRVEAP----ADVQDLPLRVVTPAFMISELKTAFTIGFLLFVPFLV 183 Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ID++VA+++M+MGMMMLPP +SLPFK+IFFVL+DGW L+ +LV+SF Sbjct: 184 IDLVVASVLMSMGMMMLPPVVVSLPFKLIFFVLVDGWRLVAGSLVESF 231 >gi|256158112|ref|ZP_05456030.1| flagellar biosynthesis protein FliP [Brucella ceti M490/95/1] gi|256252934|ref|ZP_05458470.1| flagellar biosynthesis protein FliP [Brucella ceti B1/94] gi|261220025|ref|ZP_05934306.1| flagellar biosynthetic protein FliP [Brucella ceti B1/94] gi|265996629|ref|ZP_06109186.1| flagellar biosynthetic protein FliP [Brucella ceti M490/95/1] gi|260918609|gb|EEX85262.1| flagellar biosynthetic protein FliP [Brucella ceti B1/94] gi|262550926|gb|EEZ07087.1| flagellar biosynthetic protein FliP [Brucella ceti M490/95/1] Length = 246 Score = 207 bits (528), Expect = 9e-52, Method: Composition-based stats. Identities = 129/240 (53%), Positives = 174/240 (72%), Gaps = 4/240 (1%) Query: 7 FALFLVTPELVFAKSSLHDVMNIPAD-LSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65 L A+ +L +PA + S IV+ FG+ T+LSIAP LLIMVT F RF Sbjct: 9 VILTFALTVSAQAQQALPLDKLLPAGSGAASGQIVQLFGLLTVLSIAPGLLIMVTSFTRF 68 Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 I FS+LR+G+G+ + P ++V+ISLALFMTFYVM+P DR+ G+QPLM N+IT+ A Sbjct: 69 AIAFSLLRSGLGLQTAPASMVMISLALFMTFYVMAPAFDRAWNNGVQPLMRNEITQEAAF 128 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185 +++PF FM R+KDL LF D+A S R +D +++R+L+P+FMISELRR F Sbjct: 129 GEISQPFREFMMAQVRDKDLRLFEDLADPSFRTSDDGI---VDFRVLVPAFMISELRRGF 185 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 EIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW++LV +L++SF Sbjct: 186 EIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245 >gi|308184472|ref|YP_003928605.1| flagellar biosynthesis protein FliP [Helicobacter pylori SJM180] gi|308060392|gb|ADO02288.1| flagellar biosynthesis protein FliP [Helicobacter pylori SJM180] Length = 301 Score = 207 bits (528), Expect = 9e-52, Method: Composition-based stats. Identities = 106/244 (43%), Positives = 163/244 (66%), Gaps = 6/244 (2%) Query: 4 YCFFALFLVTPELVF--AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61 + L+ P + A S++ +N P+D + + T+L +AP L++++T Sbjct: 59 FLILICPLICPLMSADSALPSVNLSLNAPSDPKQLVTTLNVIALLTLLVLAPSLILVMTS 118 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F R I+VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+ Sbjct: 119 FTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISY 178 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 T A ++ A PF FM NTREKDL+LF + + + T D + +LIP+FMISEL Sbjct: 179 TEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISEL 234 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 + +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENL Sbjct: 235 KTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENL 294 Query: 242 VKSF 245 V SF Sbjct: 295 VASF 298 >gi|62317108|ref|YP_222961.1| flagellar biosynthesis protein FliP [Brucella abortus bv. 1 str. 9-941] gi|83269100|ref|YP_418391.1| flagellar biosynthesis protein FliP [Brucella melitensis biovar Abortus 2308] gi|189022373|ref|YP_001932114.1| flagellar biosynthesis protein FliP [Brucella abortus S19] gi|237816670|ref|ZP_04595662.1| flagellar biosynthetic protein FliP [Brucella abortus str. 2308 A] gi|254691406|ref|ZP_05154660.1| flagellar biosynthesis protein FliP [Brucella abortus bv. 6 str. 870] gi|254698391|ref|ZP_05160219.1| flagellar biosynthesis protein FliP [Brucella abortus bv. 2 str. 86/8/59] gi|254731838|ref|ZP_05190416.1| flagellar biosynthesis protein FliP [Brucella abortus bv. 4 str. 292] gi|256256592|ref|ZP_05462128.1| flagellar biosynthesis protein FliP [Brucella abortus bv. 9 str. C68] gi|260544347|ref|ZP_05820168.1| flagellar transporter FliP [Brucella abortus NCTC 8038] gi|260757020|ref|ZP_05869368.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 6 str. 870] gi|260759608|ref|ZP_05871956.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 4 str. 292] gi|260762850|ref|ZP_05875182.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 2 str. 86/8/59] gi|260882830|ref|ZP_05894444.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 9 str. C68] gi|297249948|ref|ZP_06933649.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 5 str. B3196] gi|62197301|gb|AAX75600.1| FliP, flagellar biosynthetic protein [Brucella abortus bv. 1 str. 9-941] gi|82939374|emb|CAJ12324.1| Flagellar transport protein FliP:Type III secretion system inner membrane P protein [Brucella melitensis biovar Abortus 2308] gi|189020947|gb|ACD73668.1| Flagellar transport protein FliP [Brucella abortus S19] gi|237787483|gb|EEP61699.1| flagellar biosynthetic protein FliP [Brucella abortus str. 2308 A] gi|260097618|gb|EEW81492.1| flagellar transporter FliP [Brucella abortus NCTC 8038] gi|260669926|gb|EEX56866.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 4 str. 292] gi|260673271|gb|EEX60092.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 2 str. 86/8/59] gi|260677128|gb|EEX63949.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 6 str. 870] gi|260872358|gb|EEX79427.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 9 str. C68] gi|297173817|gb|EFH33181.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 5 str. B3196] Length = 246 Score = 207 bits (528), Expect = 9e-52, Method: Composition-based stats. Identities = 130/240 (54%), Positives = 175/240 (72%), Gaps = 4/240 (1%) Query: 7 FALFLVTPELVFAKSSLHDVMNIPAD-LSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65 L L A+ +L +PA + S IV+ FG+ T+LSIAP LLIMVT F RF Sbjct: 9 VILTLALTVSAQAQQALPLDKLLPAGSGAASGQIVQLFGLLTVLSIAPGLLIMVTSFTRF 68 Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 I FS+LR+G+G+ + P ++V+ISLALFMTFYVM+P DR+ G+QPLM N+IT+ A Sbjct: 69 AIAFSLLRSGLGLQTAPASMVMISLALFMTFYVMAPAFDRAWNNGVQPLMRNEITQEAAF 128 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185 +++PF FM R+KDL LF D+A S R +D +++R+L+P+FMISELRR F Sbjct: 129 GEISQPFREFMMAQVRDKDLCLFEDLADPSFRTSDDGI---VDFRVLVPAFMISELRRGF 185 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 EIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW++LV +L++SF Sbjct: 186 EIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245 >gi|167579277|ref|ZP_02372151.1| flagellar biosynthesis protein FliP [Burkholderia thailandensis TXDOH] gi|167617383|ref|ZP_02386014.1| flagellar biosynthesis protein FliP [Burkholderia thailandensis Bt4] Length = 253 Score = 207 bits (528), Expect = 9e-52, Method: Composition-based stats. Identities = 93/216 (43%), Positives = 140/216 (64%), Gaps = 4/216 (1%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P + + V+T + T+LS P +L+M+T F R IIV S+LR +G S PPN V++ Sbjct: 41 PNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQAIGTASTPPNQVLVG 100 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 LALF+T +VMSP LD++ +P + A+QR PF FM TRE DL+LF Sbjct: 101 LALFLTLFVMSPVLDKAYTDAYKPFSEGTLQMDQAVQRGTAPFKTFMLKQTRETDLALFA 160 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 ++ + + + + +L+P+F+ SEL+ F+IGF I +PFLIIDM+VA+++M+M Sbjct: 161 KIS----KAAPMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSM 216 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMM+ P ++SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 217 GMMMVSPATVSLPFKLMLFVLVDGWQLLIGSLAQSF 252 >gi|306846272|ref|ZP_07478833.1| flagellar biosynthetic protein FliP [Brucella sp. BO1] gi|306273267|gb|EFM55136.1| flagellar biosynthetic protein FliP [Brucella sp. BO1] Length = 246 Score = 207 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 130/240 (54%), Positives = 174/240 (72%), Gaps = 4/240 (1%) Query: 7 FALFLVTPELVFAKSSLHDVMNIPAD-LSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65 L L A+ +L +PA + S IV+ FG+ T+LSIAP LLIMVT F RF Sbjct: 9 VILTLALTVSAQAQQALTLDKLLPAGSGAASGQIVQLFGLLTVLSIAPGLLIMVTSFTRF 68 Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 I FS+LR+G+G+ + P ++V+ISLALFMTFYVM+P DR+ + G+QPLM N+IT+ A Sbjct: 69 AIAFSLLRSGLGLQTAPASMVMISLALFMTFYVMAPAFDRAWDNGVQPLMRNEITQEAAF 128 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185 +++PF FM R KDL LF D+A S R D +++R+L+P+FMISELRR F Sbjct: 129 GEISQPFREFMMAQVRGKDLRLFEDLADPSFRTGDDGI---VDFRVLVPAFMISELRRGF 185 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 EIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW++LV +L++SF Sbjct: 186 EIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245 >gi|57242347|ref|ZP_00370286.1| flagellar biosynthetic protein FliP [Campylobacter upsaliensis RM3195] gi|57017027|gb|EAL53809.1| flagellar biosynthetic protein FliP [Campylobacter upsaliensis RM3195] Length = 244 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 108/245 (44%), Positives = 162/245 (66%), Gaps = 7/245 (2%) Query: 5 CFFALFLVTPELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61 F L L + A++++ V ++ P + + + TIL++AP ++ ++T Sbjct: 3 SVFLLILFALSVFGAEATIPTVNLSLSAPDTPNQLVTTLNIIIVLTILALAPSIIFIMTS 62 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F R IIVFS LR MG S+PPN +++++AL +TF++M P +S G++P ++ QI Sbjct: 63 FLRLIIVFSFLRQAMGTQSMPPNTILVTMALILTFFIMEPVATKSYNEGVKPYLSEQIGY 122 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 A R A+PF FM NTREKDL+LF + + + T D + +L+P+FMISEL Sbjct: 123 EEAFVRGAKPFKDFMLKNTREKDLALFYRIRNLPNPKT----IDDVPLSVLVPAFMISEL 178 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 + +FEIGFLI LPFL+IDM+V++++MAMGMMMLPP ISLPFK++ FVL+DGW+LLV+ L Sbjct: 179 KTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPVMISLPFKLLIFVLVDGWNLLVQRL 238 Query: 242 VKSFI 246 V+SF+ Sbjct: 239 VESFV 243 >gi|317121829|ref|YP_004101832.1| flagellar biosynthetic protein FliP [Thermaerobacter marianensis DSM 12885] gi|315591809|gb|ADU51105.1| flagellar biosynthetic protein FliP [Thermaerobacter marianensis DSM 12885] Length = 227 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 84/194 (43%), Positives = 132/194 (68%), Gaps = 4/194 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +LIM+T F R ++ S LR+ +G PPN V++ LALF+T +VM+P + + Sbjct: 34 APAILIMMTGFTRIVVALSFLRSALGTQQAPPNQVLVGLALFLTVFVMAPVWQQVYQDAW 93 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 P + QI + A+QR +P FM TRE+DL+LF++++ + D + + Sbjct: 94 VPYRDGQIGQVEALQRAQQPVREFMFRYTRERDLALFLELSGRG----PVESRDQVPTYV 149 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 LIP+F ISEL+ +F+IGF++ +PFL+IDM+VA+ +M+MGM+M+PP +SLPFK++ FVL+ Sbjct: 150 LIPAFAISELKTAFQIGFILYVPFLVIDMVVASTLMSMGMLMVPPMLVSLPFKILLFVLV 209 Query: 232 DGWSLLVENLVKSF 245 DGW+L+V +L+ SF Sbjct: 210 DGWNLVVRSLLASF 223 >gi|315498438|ref|YP_004087242.1| flagellar biosynthetic protein flip [Asticcacaulis excentricus CB 48] gi|315416450|gb|ADU13091.1| flagellar biosynthetic protein FliP [Asticcacaulis excentricus CB 48] Length = 268 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 95/245 (38%), Positives = 158/245 (64%), Gaps = 7/245 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 ++ ++ P V A+S +++ +++ +V+ G+ T+LS+AP ++IM T Sbjct: 23 LLGGILGFALMIFPGDVLAQSV---NLDLGQGGTLTARVVQMLGLLTVLSLAPSIVIMTT 79 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R ++V S+LRT +G+ PPN V+ISLA+F++ VM+PT + + GI+PLM+ ++ Sbjct: 80 SFIRIVVVLSLLRTALGLQQSPPNAVLISLAMFLSAVVMAPTYQAAYDAGIRPLMDQEME 139 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A +EP FM + DL+LF+ ++ ++ + ++ P+FMISE Sbjct: 140 MPQAFDAASEPVKTFMLSQVDAGDLNLFIRLSKVEKPKDNM----DLPITVITPAFMISE 195 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +F IGFL+ +PFL+ID++VA+++M+MGMMMLPP +SLPFK+IFFVL+DGW L+ + Sbjct: 196 LKTAFLIGFLLFIPFLVIDLVVASVLMSMGMMMLPPVVVSLPFKLIFFVLVDGWRLVCGS 255 Query: 241 LVKSF 245 LV+SF Sbjct: 256 LVESF 260 >gi|260899945|ref|ZP_05908340.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus AQ4037] gi|308107285|gb|EFO44825.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus AQ4037] Length = 289 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 92/219 (42%), Positives = 137/219 (62%), Gaps = 5/219 (2%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 P + ++ + T+L P ++I++T F R ++V SILR MG+ P N V Sbjct: 74 TTNPDGSEDYSVTLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 133 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 II +ALF+TF+VMSP L+ + IQP +N Q+T A P FM TR KDL Sbjct: 134 IIGIALFLTFFVMSPVLNEINDTAIQPYLNEQVTAREAFDAAQVPMKAFMLKQTRIKDLE 193 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 F++M+ +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++ Sbjct: 194 TFVNMSG-----EQVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 248 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 249 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287 >gi|269961630|ref|ZP_06175992.1| Flagellar biosynthetic protein fliP [Vibrio harveyi 1DA3] gi|269833671|gb|EEZ87768.1| Flagellar biosynthetic protein fliP [Vibrio harveyi 1DA3] Length = 289 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 89/209 (42%), Positives = 137/209 (65%), Gaps = 5/209 (2%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + ++ + T+L P ++I++T F R ++V SILR MG+ P N VII +ALF+TF Sbjct: 84 SVTLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTF 143 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 ++MSP L+ + +QP +N Q+T A P FM TR KDL F++M+ Sbjct: 144 FIMSPVLNEINDQAVQPYLNEQVTAREAFDAAQAPMKAFMLKQTRIKDLETFVNMSG--- 200 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 ++T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGMMML P Sbjct: 201 --EEVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGMMMLSP 258 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +SLPFK++ FVL+DGW+L++ L SF Sbjct: 259 MIVSLPFKLMLFVLVDGWNLILSTLAGSF 287 >gi|188586035|ref|YP_001917580.1| flagellar biosynthetic protein FliP [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350722|gb|ACB84992.1| flagellar biosynthetic protein FliP [Natranaerobius thermophilus JW/NM-WN-LF] Length = 255 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 89/193 (46%), Positives = 127/193 (65%), Gaps = 4/193 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P LLI+ T F R +IV S +R + +PPN V+I LALF+TF++MSP + + Sbjct: 66 PALLILTTSFTRVVIVLSFIRNALATQQMPPNQVLIGLALFLTFFIMSPVWGDVYQEAWE 125 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P IT+ AI+ EP FM TRE DL+LF++ + + T + + ++ Sbjct: 126 PYREGDITQEEAIENGLEPVREFMYQQTREDDLALFVEYSDIENPAT----IEDVPTHVI 181 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 IP+F+ISEL+ +F+IGF+I +PFLIIDMIVA+ +M+MGM+MLPP ISLPFKV+ FVL+D Sbjct: 182 IPAFVISELKTAFQIGFMIFVPFLIIDMIVASTLMSMGMLMLPPVMISLPFKVLLFVLVD 241 Query: 233 GWSLLVENLVKSF 245 GW L+ +L+ SF Sbjct: 242 GWFLITRSLLISF 254 >gi|284007164|emb|CBA72448.1| flagellar biosynthesis protein FliP [Arsenophonus nasoniae] Length = 245 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 95/247 (38%), Positives = 149/247 (60%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 M R F + + A +++ + + P +W V+T T L P LL+M Sbjct: 1 MRRLLFLLSNTLFWLPLHAYAAIPAITSQPLANGGQSWSLPVQTLIFITALGFIPALLLM 60 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 T F R IIV +LR +G + PPN +++ LALFMTF+VMSP D+ + P + Sbjct: 61 TTSFTRIIIVLGLLRNALGTPTAPPNQILLGLALFMTFFVMSPVFDKIYQNAYLPFSEEK 120 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 IT + A+P FM TR+ DL+LF +A+ S T + RIL+P+F+ Sbjct: 121 ITIEVDLSEGAKPLRQFMLQQTRQPDLALFARLANDSEYQTQA----DVPMRILVPAFIT 176 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF++ +PFLIID++VA+++MA+GMMM+PP ++++PFK++ FVL+DGW L++ Sbjct: 177 SELKTAFQIGFMLFIPFLIIDLVVASVLMALGMMMVPPATVAMPFKLMLFVLVDGWQLIL 236 Query: 239 ENLVKSF 245 +L +SF Sbjct: 237 GSLAQSF 243 >gi|158320529|ref|YP_001513036.1| flagellar biosynthetic protein FliP [Alkaliphilus oremlandii OhILAs] gi|158140728|gb|ABW19040.1| flagellar biosynthetic protein FliP [Alkaliphilus oremlandii OhILAs] Length = 269 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 95/250 (38%), Positives = 160/250 (64%), Gaps = 7/250 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSS-----LHDVMNIPADLSISTWIVRTFGIFTILSIAPIL 55 M + ++ FA+ + L ++ + + ++ + TILS+AP + Sbjct: 21 MACFIIICFIVLGSNQAFAQPNITVPNLQLSIDGASSPEETVNSLQLLSLLTILSLAPAI 80 Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115 LIMVT F R IIV S LR + PP V+I LALF+TF++M+P + +QP + Sbjct: 81 LIMVTSFTRIIIVLSFLRNALATQQTPPTQVLIGLALFLTFFIMAPVASEINQNALQPFL 140 Query: 116 NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPS 175 N +IT+ A++ +P FM TREKDL+LF++ ++S ++ + + I+ LIP+ Sbjct: 141 NQEITQQQAVEEAMDPLREFMFRQTREKDLALFIEASNSEV--SENFQVEDIKTTTLIPA 198 Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235 F+ISEL+ +F++GF++ +PF+++DM+VA+++M+MGMMMLPP ISLPFK++ FV++DGW+ Sbjct: 199 FIISELKTAFQMGFVLFIPFIVLDMVVASVLMSMGMMMLPPAMISLPFKLMLFVMVDGWN 258 Query: 236 LLVENLVKSF 245 +L+++L+ SF Sbjct: 259 VLIKSLLLSF 268 >gi|74055044|gb|AAZ95849.1| FliP [Aeromonas hydrophila] Length = 259 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 92/220 (41%), Positives = 140/220 (63%), Gaps = 5/220 (2%) Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85 + + + ++ + T LS P ++IM+T F R IIV ILR +G+ P N Sbjct: 39 IKTMADGSQEYSLTLQVLALMTALSFLPAMVIMMTSFTRIIIVLGILRQAIGLQQSPSNQ 98 Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145 V+I +ALFM+F++MSP LDR +QP + I A+++ P FM TR KDL Sbjct: 99 VLIGIALFMSFFIMSPVLDRINNEALQPYLAETIQAKEALEKAELPIHQFMLAQTRIKDL 158 Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205 + FM++A N + K + R+LIP+F+ SEL+ +F+IGF++ LPFL+ID++VA+I Sbjct: 159 NTFMEIA-----NVQVDKPAEVPLRVLIPAFVTSELKTAFQIGFMLFLPFLVIDLVVASI 213 Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MAMGMMML P +SLPFK++ FV++DGW+L++ +L SF Sbjct: 214 LMAMGMMMLSPMLVSLPFKLMLFVMVDGWNLILGSLANSF 253 >gi|332981449|ref|YP_004462890.1| flagellar biosynthetic protein FliP [Mahella australiensis 50-1 BON] gi|332699127|gb|AEE96068.1| flagellar biosynthetic protein FliP [Mahella australiensis 50-1 BON] Length = 257 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 93/194 (47%), Positives = 135/194 (69%), Gaps = 4/194 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +LIM+T F R I+V S +R+ +G+ +PPN VII LALF+TF+ M+P + + + Sbjct: 67 APAILIMLTSFTRIIVVLSFVRSALGLQQMPPNQVIIGLALFLTFFTMAPVATQINQTAL 126 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 QP MN QI + AI P FM TREKDL+LF++++ I + Sbjct: 127 QPYMNGQIEQQQAIDNAMVPLREFMFKETREKDLNLFVNLSGMDKPEQ----LSDISSTV 182 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 LIP+F+ISEL+ +F+IGFLI +PF++IDM+VAT +M+MGMMM+PP ISLPFKV+ F+++ Sbjct: 183 LIPAFIISELKTAFQIGFLIYVPFIVIDMVVATTLMSMGMMMIPPVMISLPFKVLLFIMV 242 Query: 232 DGWSLLVENLVKSF 245 DGW+L+V++L+ SF Sbjct: 243 DGWNLVVQSLITSF 256 >gi|227112531|ref|ZP_03826187.1| flagellar biosynthesis protein FliP [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227328348|ref|ZP_03832372.1| flagellar biosynthesis protein FliP [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 258 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 103/244 (42%), Positives = 152/244 (62%), Gaps = 4/244 (1%) Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61 +RY L V+A+ +P T V+T + T L+ P L+M+T Sbjct: 17 LRYGLAIGLLFMAPSVWAQLPGIVTQPLPNGGQSWTLSVQTLVLLTSLTFIPAALLMMTS 76 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F R IIV S+LR +G + PPN V++ L LF+TF+VMSP L+R + P +QI+ Sbjct: 77 FTRIIIVLSLLRNALGTPTAPPNQVLLGLTLFLTFFVMSPVLNRVYDEAYLPFSQDQISM 136 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 AI+R AEP FM TRE DL+LF +A +I + + R+L+P+F+ SEL Sbjct: 137 EVAIERGAEPVREFMLRQTRETDLALFTRLAEIP----EIQGPEAVPMRVLLPAFVTSEL 192 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 + +F+IGF + +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L Sbjct: 193 KTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSL 252 Query: 242 VKSF 245 +SF Sbjct: 253 AQSF 256 >gi|256830495|ref|YP_003159223.1| flagellar biosynthetic protein FliP [Desulfomicrobium baculatum DSM 4028] gi|256579671|gb|ACU90807.1| flagellar biosynthetic protein FliP [Desulfomicrobium baculatum DSM 4028] Length = 231 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 94/221 (42%), Positives = 141/221 (63%), Gaps = 4/221 (1%) Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85 + + PA+ + + T+LS+AP ++ VT F R IIVF LR MG +PPN Sbjct: 15 LSSGPAEPQKVAVALEIMALLTMLSMAPAFVLTVTSFTRIIIVFHFLRQAMGTQQMPPNQ 74 Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145 V+ SLA+FMT +M PT + +QP +N +I A++R P F+ +TREKDL Sbjct: 75 VLASLAIFMTVVIMMPTGRTINDTALQPYLNEEIGYGEALERAETPLRTFLFKHTREKDL 134 Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205 S+F + D + IL+P+++ISEL+ F+IGFLI +PFLI+DM+VA+I Sbjct: 135 SVFFSITGLERP----QNKDEVPTMILVPAYLISELKTGFQIGFLIYIPFLILDMVVASI 190 Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +++MGMMMLPP +SLPFK++ FV++DGW+L++ +LV SF+ Sbjct: 191 LLSMGMMMLPPVMVSLPFKILLFVMVDGWNLIIGSLVNSFV 231 >gi|54308125|ref|YP_129145.1| flagellar biosynthesis protein FliP [Photobacterium profundum SS9] gi|46912551|emb|CAG19343.1| Putative polar flagellar assembly protein, FliP [Photobacterium profundum SS9] Length = 284 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 93/221 (42%), Positives = 139/221 (62%), Gaps = 5/221 (2%) Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84 V P + ++ G+ T L P ++I++T F R ++V SILR MG+ P N Sbjct: 67 SVTTNPDGSEDYSVTLQILGLMTALGFLPAIIILMTSFTRIVVVLSILRQAMGLQQTPSN 126 Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144 VII +ALF+T +VMSP +D+ +QP +N +IT A + P FM TR KD Sbjct: 127 QVIIGIALFLTLFVMSPVIDKVNADAVQPYINEEITAAQAFETAQVPLRQFMLKQTRVKD 186 Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204 L F++M+ S+ T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+ Sbjct: 187 LESFVNMSGST-----ATAPEDVPITVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVAS 241 Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 242 VLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 282 >gi|304316893|ref|YP_003852038.1| flagellar biosynthetic protein FliP [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778395|gb|ADL68954.1| flagellar biosynthetic protein FliP [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 249 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 98/239 (41%), Positives = 152/239 (63%), Gaps = 5/239 (2%) Query: 7 FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66 L + +S +N P+ + T ++ + T+L++AP +LIM+T F R I Sbjct: 15 LILLTKVTYAASSSASPLITINAPSGPNDITSSIQIVLLLTVLTLAPSILIMMTSFTRII 74 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 +V S LR +G+ +PPN V+I L+LF+TF++M+P + IQP M +IT A Sbjct: 75 VVLSFLRNALGLQQMPPNQVLIGLSLFLTFFIMAPVGVQINNDSIQPYMQGKITPQVAYV 134 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 + +P FM TR+ DL+LF+++A + + I R++IPSF+ISEL+ +FE Sbjct: 135 KARDPLKNFMLKQTRKNDLNLFINLAKIK-----VKSVNDIPLRVVIPSFIISELKTAFE 189 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGF+I +PFLIIDM+VA+++M+MGM MLPP ISLPFK++ F+L+DGW++L ++LV F Sbjct: 190 IGFIIYIPFLIIDMVVASVLMSMGMFMLPPVLISLPFKLLLFILVDGWNILAKSLVIGF 248 >gi|256376457|ref|YP_003100117.1| flagellar biosynthesis protein FliP [Actinosynnema mirum DSM 43827] gi|255920760|gb|ACU36271.1| flagellar biosynthetic protein FliP [Actinosynnema mirum DSM 43827] Length = 293 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 133/222 (59%), Gaps = 4/222 (1%) Query: 24 HDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPP 83 + +NI + + T+LS+AP LL++ T F + +V SI R +G+ +VPP Sbjct: 75 GNSVNITVGGGKPSDSLTVLVALTVLSVAPALLLLCTSFTKVFVVLSITRNALGLTTVPP 134 Query: 84 NLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREK 143 N V+ LALF++ ++M P + GIQP + + + A + ++P FM TR + Sbjct: 135 NQVLAGLALFLSLFIMGPVASEVNDQGIQPYLKGEKSTEQAFEDGSKPLREFMVKQTRPE 194 Query: 144 DLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVA 203 +++LF ++ + + LIP+F++SELR + IGF++ +PFL+IDM+V+ Sbjct: 195 EIALFTKVSGQEKP----ANAESVPLTTLIPAFVLSELRAAMIIGFVLYIPFLVIDMVVS 250 Query: 204 TIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +M++GMMMLPP +++LPFK++ FVL +GW L++ LV ++ Sbjct: 251 AALMSLGMMMLPPVTVALPFKLLLFVLANGWGLVITALVATY 292 >gi|256029950|ref|ZP_05443564.1| flagellar biosynthesis protein FliP [Brucella pinnipedialis M292/94/1] gi|265986969|ref|ZP_06099526.1| flagellar biosynthetic protein FliP [Brucella pinnipedialis M292/94/1] gi|264659166|gb|EEZ29427.1| flagellar biosynthetic protein FliP [Brucella pinnipedialis M292/94/1] Length = 246 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 130/240 (54%), Positives = 175/240 (72%), Gaps = 4/240 (1%) Query: 7 FALFLVTPELVFAKSSLHDVMNIPAD-LSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65 L L A+ +L +PA + S IV+ FG+ T+LSIAP LLIMVT F RF Sbjct: 9 VILTLALTVSAQAQQALPLDKLLPAGSGAASGQIVQLFGLLTVLSIAPGLLIMVTSFTRF 68 Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 I FS+LR+G+G+ + P ++V+ISLALFMTFYVM+P DR+ G+QPLM N+IT+ A Sbjct: 69 AIAFSLLRSGLGLQTAPASMVMISLALFMTFYVMAPAFDRAWNNGVQPLMPNEITQEAAF 128 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185 +++PF FM R+KDL LF D+A S R +D +++R+L+P+FMISELRR F Sbjct: 129 GEISQPFREFMMAQVRDKDLRLFEDLADPSFRTSDDGI---VDFRVLVPAFMISELRRGF 185 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 EIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW++LV +L++SF Sbjct: 186 EIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245 >gi|262276385|ref|ZP_06054194.1| flagellar biosynthesis protein FliP [Grimontia hollisae CIP 101886] gi|262220193|gb|EEY71509.1| flagellar biosynthesis protein FliP [Grimontia hollisae CIP 101886] Length = 277 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 90/216 (41%), Positives = 138/216 (63%), Gaps = 5/216 (2%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P + ++ + T L P ++I++T F R ++V +ILR MG+ P N VII Sbjct: 66 PDGTEDYSVTLQILALMTALGFLPAIVILMTSFTRIVVVMAILRQAMGLQQTPSNQVIIG 125 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 +A+F+T ++MSP +DR +QP +N +IT A RV P FM TR KDL F+ Sbjct: 126 IAMFLTLFIMSPVIDRMNVAAVQPYLNEEITAREAFDRVQVPLREFMLQQTRVKDLETFV 185 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 +M+ +T+ + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAM Sbjct: 186 NMSG-----AQVTEAEQVPMTVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAM 240 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 241 GMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 276 >gi|315638458|ref|ZP_07893635.1| flagellar biosynthetic protein FliP [Campylobacter upsaliensis JV21] gi|315481449|gb|EFU72076.1| flagellar biosynthetic protein FliP [Campylobacter upsaliensis JV21] Length = 244 Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 107/245 (43%), Positives = 161/245 (65%), Gaps = 7/245 (2%) Query: 5 CFFALFLVTPELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61 F L L + A++++ V ++ P + + + TIL++AP ++ ++T Sbjct: 3 SVFLLILFALSVFGAEATIPTVNLSLSAPDTPNQLVTTLNIIIVLTILALAPSIIFIMTS 62 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F R IIVFS LR MG S+PPN +++++AL +TF++M P +S G++P ++ QI Sbjct: 63 FLRLIIVFSFLRQAMGTQSMPPNTILVTMALILTFFIMEPVATKSYNEGVKPYLSEQIGY 122 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 A R +PF FM NTREKDL+LF + + + T D + +L+P+FMISEL Sbjct: 123 EEAFVRGVKPFKDFMLKNTREKDLALFYRIRNLPNPKT----IDDVPLSVLVPAFMISEL 178 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 + +FEIGFLI LPFL+IDM+V++++MAMGMMMLPP ISLPFK++ FVL+DGW+LLV+ L Sbjct: 179 KTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPVMISLPFKLLIFVLVDGWNLLVQRL 238 Query: 242 VKSFI 246 V+SF+ Sbjct: 239 VESFV 243 >gi|239834436|ref|ZP_04682764.1| flagellar biosynthetic protein FliP [Ochrobactrum intermedium LMG 3301] gi|239822499|gb|EEQ94068.1| flagellar biosynthetic protein FliP [Ochrobactrum intermedium LMG 3301] Length = 246 Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 125/245 (51%), Positives = 173/245 (70%), Gaps = 3/245 (1%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 ++ +T ++ D + + S IV+ FG+ T+LSIAP +LIMVT Sbjct: 4 LLGLGVILTLALTVSAQAQQALTLDNLLPAGSGAASGQIVQLFGLLTVLSIAPGILIMVT 63 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F RF I FS+LR+G+G+ + P ++V+ISLALFMTFYVM+P DR+ G+QPLM N+IT Sbjct: 64 SFTRFAIAFSLLRSGLGLQTAPASMVMISLALFMTFYVMAPAFDRAWNNGVQPLMRNEIT 123 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 + A +++PF FM R+KDL LF D+A S R D +++R+L+P+FMISE Sbjct: 124 QQAAFTEISQPFREFMLGQVRDKDLRLFEDLADPSFRTGDDGI---VDFRVLVPAFMISE 180 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 LRR FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW++LV + Sbjct: 181 LRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNILVGS 240 Query: 241 LVKSF 245 L++SF Sbjct: 241 LIRSF 245 >gi|167037653|ref|YP_001665231.1| flagellar biosynthesis protein FliP [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116068|ref|YP_004186227.1| flagellar biosynthetic protein FliP [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856487|gb|ABY94895.1| flagellar biosynthetic protein FliP [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929159|gb|ADV79844.1| flagellar biosynthetic protein FliP [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 221 Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 94/223 (42%), Positives = 146/223 (65%), Gaps = 5/223 (2%) Query: 23 LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82 L D+++ S ++ + T+L++AP +LIM+T F R +IV S LR +G+ +P Sbjct: 3 LGDLVSSVTAPSNMATSLQIVLLLTVLTLAPSILIMMTSFTRIVIVLSFLRNALGLQQMP 62 Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142 PN V+I LALF+T ++M+P I+P +IT+ A Q +P FM TR+ Sbjct: 63 PNQVLIGLALFLTLFIMAPIGQDINNNAIKPYTEGKITQEEAYQNAIKPLKNFMLKQTRQ 122 Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202 DL+LF+ +A + + + R++IPSF+ISEL+ +FEIGF+I +PFLIID++V Sbjct: 123 SDLNLFVSLAKIK-----VNNAEDLPMRVVIPSFIISELKTAFEIGFIIYIPFLIIDIVV 177 Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 A+++M+MGM MLPP ISLPFKV+ F+L+DGW+L+V++L+ F Sbjct: 178 ASVLMSMGMFMLPPVLISLPFKVLLFILVDGWNLVVKSLILGF 220 >gi|115523185|ref|YP_780096.1| flagellar biosynthesis protein FliP [Rhodopseudomonas palustris BisA53] gi|115517132|gb|ABJ05116.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris BisA53] Length = 244 Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 126/246 (51%), Positives = 168/246 (68%), Gaps = 2/246 (0%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 M R ++ P A+ + S S I++ + T+LS+AP LLIMVT Sbjct: 1 MKRAPLVLFAVLLPTAALAQIPDLSTLIPQGQGSASGRIIQMVALLTVLSLAPGLLIMVT 60 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F RF++ S LRTG+G+ + P N+V+ISLALF+TFYVM+PT DR+ GIQPLM N+IT Sbjct: 61 SFTRFVVALSFLRTGLGLQTTPANIVMISLALFLTFYVMAPTFDRAWREGIQPLMQNEIT 120 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 E A RV EPF FM R+KDL F ++A S R + ++ R++IP+FM+SE Sbjct: 121 EKEAYARVTEPFREFMLAQVRDKDLQTFENLAAESLRAKP--DGERVDLRVIIPAFMVSE 178 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 LRR+FEIGFLI++PFL+IDMIVAT+ M+MGMMM+PPT +LPFKV+FFVLIDGW+LL Sbjct: 179 LRRAFEIGFLIVMPFLVIDMIVATLTMSMGMMMMPPTVFALPFKVLFFVLIDGWNLLAVG 238 Query: 241 LVKSFI 246 LV+SF+ Sbjct: 239 LVRSFL 244 >gi|188997535|ref|YP_001931786.1| flagellar biosynthetic protein FliP [Sulfurihydrogenibium sp. YO3AOP1] gi|188932602|gb|ACD67232.1| flagellar biosynthetic protein FliP [Sulfurihydrogenibium sp. YO3AOP1] Length = 337 Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 110/242 (45%), Positives = 152/242 (62%), Gaps = 5/242 (2%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63 Y ++ +V L F+ S A + ++ + TI+SIAP LLI VT F Sbjct: 100 YLIISIIIVLTLLNFSFSYADTFSETLAGFNRLDTTLKILLLITIISIAPALLISVTAFV 159 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 R +IV S+LR +G+ + PPN VI+ LALF+T +VM PT D+ E+ I P + QI++ Sbjct: 160 RIVIVLSLLRHALGIPTAPPNQVIVGLALFLTIFVMKPTFDKINEVSISPYLKKQISDIQ 219 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 AI+ EP FM NTR++DL LF+D+A N I LIP+FMISE++ Sbjct: 220 AIENAKEPLKEFMLKNTRKEDLKLFLDLA-----NEKPLSPKDISISTLIPAFMISEIKT 274 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 +FEI F+I LPFL+ID IVA+I+M+MGMMM+PP ISLPFK++ FVL DG+ LLV+ LV Sbjct: 275 AFEIVFIIYLPFLVIDFIVASILMSMGMMMIPPMFISLPFKLMLFVLADGFELLVKALVS 334 Query: 244 SF 245 S+ Sbjct: 335 SY 336 >gi|123442774|ref|YP_001006751.1| flagellar biosynthesis protein FliP [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089735|emb|CAL12588.1| flagellar biosynthetic protein FliP [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 228 Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 94/230 (40%), Positives = 147/230 (63%), Gaps = 6/230 (2%) Query: 18 FAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTG 75 A + L +++ P +W V+T T LS P L+M+T F R IIV +LR Sbjct: 1 MAMAQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLLRNA 60 Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVF 135 +G S PPN V++ LALF+TF++MSP D+ + P ++I+ A+ + ++P F Sbjct: 61 LGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAMDKGSQPLREF 120 Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195 M TRE DL+L+ +A+ + + + RIL+P+++ SEL+ +F+IGF + +PF Sbjct: 121 MLRQTRESDLALYARLANLP----PLEGPEVVPLRILLPAYVTSELKTAFQIGFTVFIPF 176 Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LIID++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 177 LIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 226 >gi|294853182|ref|ZP_06793854.1| flagellar biosynthetic protein FliP [Brucella sp. NVSL 07-0026] gi|294818837|gb|EFG35837.1| flagellar biosynthetic protein FliP [Brucella sp. NVSL 07-0026] Length = 246 Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 129/240 (53%), Positives = 174/240 (72%), Gaps = 4/240 (1%) Query: 7 FALFLVTPELVFAKSSLHDVMNIPAD-LSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65 L L A+ +L +PA + S IV+ FG+ T+LSIAP LLIMVT F RF Sbjct: 9 VILTLALTVSAQAQQALPLDKLLPAGSGAASGQIVQLFGLLTVLSIAPGLLIMVTSFTRF 68 Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 I FS+LR+G+G+ + P ++V+ISLALFMTFYVM+P DR+ G+QPLM N+IT+ A Sbjct: 69 AIAFSLLRSGLGLQTAPASMVMISLALFMTFYVMAPAFDRAWNNGVQPLMRNEITQEAAF 128 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185 +++PF FM R+KDL LF D+ S R +D +++R+L+P+FMISELRR F Sbjct: 129 GEISQPFREFMMAQVRDKDLRLFEDLVDPSFRTSDDGI---VDFRVLVPAFMISELRRGF 185 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 EIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW++LV +L++SF Sbjct: 186 EIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245 >gi|330861094|emb|CBX71361.1| flagellar biosynthetic protein fliP [Yersinia enterocolitica W22703] Length = 237 Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 95/239 (39%), Positives = 149/239 (62%), Gaps = 6/239 (2%) Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66 + L A + L +++ P +W V+T T LS P L+M+T F R I Sbjct: 1 MLLALLCSPAAMAQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRII 60 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IV +LR +G S PPN V++ LALF+TF++MSP D+ + P ++I+ A+ Sbjct: 61 IVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAMD 120 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 + ++P FM TRE DL+L+ +A+ + + + RIL+P+++ SEL+ +F+ Sbjct: 121 KGSQPLREFMLRQTRESDLALYARLANLP----PLEGPEVVPLRILLPAYVTSELKTAFQ 176 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGF + +PFLIID++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 177 IGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 235 >gi|229528865|ref|ZP_04418255.1| flagellar biosynthesis protein FliP [Vibrio cholerae 12129(1)] gi|229332639|gb|EEN98125.1| flagellar biosynthesis protein FliP [Vibrio cholerae 12129(1)] gi|327484651|gb|AEA79058.1| Flagellar biosynthesis protein FliP [Vibrio cholerae LMA3894-4] Length = 299 Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 89/206 (43%), Positives = 135/206 (65%), Gaps = 5/206 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + T+L P ++I++T F R ++V SILR MG+ P N VII +ALF+TF++M Sbjct: 97 LQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFIM 156 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +P ++ E +QP +N QIT A EP FM TR DL F++M+ Sbjct: 157 APVFNQINEQAVQPYLNEQITARQAFDLAQEPLKAFMLKQTRVNDLETFVEMSG-----A 211 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGMMML P + Sbjct: 212 QVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGMMMLSPMIV 271 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW+L++ L SF Sbjct: 272 SLPFKLMLFVLVDGWNLILSTLAGSF 297 >gi|7387672|sp|O85133|FLIP_RHOSH RecName: Full=Flagellar biosynthetic protein fliP gi|3435109|gb|AAC32322.1| flagellar protein FliP [Rhodobacter sphaeroides] Length = 301 Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 90/219 (41%), Positives = 137/219 (62%), Gaps = 4/219 (1%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 + + ++ + T L++ P L++ ++ F R IIV SILR +G PPN V Sbjct: 84 VTEGTGGTSYLLSLQILALMTALTVLPSLVLGMSAFTRIIIVLSILRQALGTQQTPPNQV 143 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 +I+LALF+TF+VM PTL E + P ++ QI AI+R F+ NTR+ DL Sbjct: 144 LIALALFLTFFVMQPTLGALYEQSLSPFLDGQIEAQPAIERGGAIMKDFLIANTRQNDLL 203 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 +F D+A + + + + L+P+FM SEL+ +F+IGFL+ LPFL+IDM++A+I+ Sbjct: 204 MFSDLAGAG----PYAEPTEVPFSTLLPAFMTSELKTAFQIGFLLFLPFLVIDMVIASIL 259 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MA+GMMML P +SLPFK++ FVL+DGW+L V +L S+ Sbjct: 260 MALGMMMLSPMLVSLPFKLLLFVLVDGWALTVGSLAASY 298 >gi|148546750|ref|YP_001266852.1| flagellar biosynthesis protein FliP [Pseudomonas putida F1] gi|148510808|gb|ABQ77668.1| flagellar biosynthetic protein FliP [Pseudomonas putida F1] Length = 251 Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 95/220 (43%), Positives = 140/220 (63%), Gaps = 4/220 (1%) Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85 + N P + ++ I T LS P +I++T F R IIVFSILR +G+ P N Sbjct: 33 LSNTPDGQQEYSVSLQILLIMTALSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQ 92 Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145 ++ +ALF+T ++M+P +R + +QP + Q+T AI + P FM TR+ DL Sbjct: 93 LLNGMALFLTMFIMAPVFERVNQDALQPYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDL 152 Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205 LFM ++ + TDI D + IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA++ Sbjct: 153 DLFMRLS----KRTDIAGPDQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASV 208 Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MAMGMMML P ISLPFK++ FVL+DGW+L++ L SF Sbjct: 209 LMAMGMMMLSPLIISLPFKIMLFVLVDGWALIMGTLASSF 248 >gi|57167820|ref|ZP_00366960.1| flagellar biosynthesis protein Cj0820c [Campylobacter coli RM2228] gi|305432155|ref|ZP_07401321.1| flagellar biosynthetic protein FliP [Campylobacter coli JV20] gi|57020942|gb|EAL57606.1| flagellar biosynthesis protein Cj0820c [Campylobacter coli RM2228] gi|304444820|gb|EFM37467.1| flagellar biosynthetic protein FliP [Campylobacter coli JV20] Length = 247 Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 103/225 (45%), Positives = 153/225 (68%), Gaps = 4/225 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 +++ ++ P + + + TIL++AP ++ ++T F R I+VFS LR MG S+ Sbjct: 26 TVNLSLSAPDTPNQLVTTLNIVIVLTILALAPSIIFVMTSFLRLIVVFSFLRQAMGTQSM 85 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PPN ++++LAL +TF++M P +S GI+P + QI A R +PF FM NTR Sbjct: 86 PPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEQIGYEEAFARGVKPFKDFMLKNTR 145 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 EKDL+LF + + + T D + +L+P+FMISEL+ +FEIGFLI LPFL+IDM+ Sbjct: 146 EKDLALFYRIRNLPNPKT----IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMV 201 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 V++++MAMGMMMLPP ISLPFK++ FVL+DGW+LLV+ LV+SF+ Sbjct: 202 VSSVLMAMGMMMLPPVMISLPFKLLIFVLVDGWNLLVQRLVESFV 246 >gi|27381978|ref|NP_773507.1| flagellar biosynthesis protein FliP [Bradyrhizobium japonicum USDA 110] gi|27355148|dbj|BAC52132.1| flagellar biosynthetic protein [Bradyrhizobium japonicum USDA 110] Length = 246 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 127/232 (54%), Positives = 170/232 (73%), Gaps = 2/232 (0%) Query: 14 PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73 PE+ FA+ + + P + S S I++ + T+LS+AP LLIMVT F RF + S LR Sbjct: 16 PEMAFAQIPDLNSLLPPGNGSTSGRIIQLMALITVLSVAPGLLIMVTSFTRFAVALSFLR 75 Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133 +G+G+ + P NLV++SLALFMTFYVM+PT DR+ E G+QPLM N+I+E A ++ +PF Sbjct: 76 SGLGLQTTPANLVLVSLALFMTFYVMAPTFDRAWETGVQPLMKNEISEEEAYLKITDPFR 135 Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193 FM + R+KDL F +A S R K I+ R++IP+FMISELRRSFEIGFLI+L Sbjct: 136 EFMLAHVRDKDLQTFEALAAESFRKKFDDKR--IDLRVIIPAFMISELRRSFEIGFLIML 193 Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 PFL+IDMIVAT+ M+MGMMM+PPT ++LPFK++FFVLIDGW+LL LV+SF Sbjct: 194 PFLVIDMIVATLTMSMGMMMMPPTILALPFKMLFFVLIDGWNLLASGLVRSF 245 >gi|254491717|ref|ZP_05104896.1| flagellar biosynthetic protein FliP [Methylophaga thiooxidans DMS010] gi|224463195|gb|EEF79465.1| flagellar biosynthetic protein FliP [Methylophaga thiooxydans DMS010] Length = 244 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 101/246 (41%), Positives = 153/246 (62%), Gaps = 6/246 (2%) Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMV 59 +R L L P L A+ + V + ++ V + + T+L++ P L+M+ Sbjct: 1 MRVLLACLLLFAPLLAVAEPGIPAVTVTGNEDGGQSYTVTLQILALMTVLTLLPAALMMM 60 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R IIV +ILR MG+ S P N ++I LALF+T ++M P ++S + + P M+ +I Sbjct: 61 TSFTRIIIVLAILRQAMGVQSTPSNQILIGLALFLTIFIMHPVFNQSYQNAVVPYMDGEI 120 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 TTA ++ ++PF FM TRE D+ LF + ++ + I + +L+PSF+ S Sbjct: 121 EFTTAFEQASQPFKEFMIAQTRETDIELFASIGG----YEELQSAEDIPFSLLLPSFVTS 176 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+ +F+IGFLI +PFLIID++VA+++MAMGMMML P ISLPFK++ FVLIDGW+LL+ Sbjct: 177 ELKTAFQIGFLIFIPFLIIDLVVASVLMAMGMMMLSPMLISLPFKLMLFVLIDGWALLMG 236 Query: 240 NLVKSF 245 L SF Sbjct: 237 TLASSF 242 >gi|332161332|ref|YP_004297909.1| flagellar biosynthesis protein FliP [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318605253|emb|CBY26751.1| flagellar biosynthesis protein FliP [Yersinia enterocolitica subsp. palearctica Y11] gi|325665562|gb|ADZ42206.1| flagellar biosynthesis protein FliP [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 250 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 93/227 (40%), Positives = 146/227 (64%), Gaps = 6/227 (2%) Query: 21 SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 + L +++ P +W V+T T LS P L+M+T F R IIV +LR +G Sbjct: 26 AQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLLRNALGT 85 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 S PPN V++ LALF+TF++MSP D+ + P ++I+ A+ + ++P FM Sbjct: 86 PSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAMDKGSQPLREFMLR 145 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 TRE DL+L+ +A+ + + + RIL+P+++ SEL+ +F+IGF + +PFLII Sbjct: 146 QTRESDLALYARLANLP----PLEGPEVVPLRILLPAYVTSELKTAFQIGFTVFIPFLII 201 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 D++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 202 DLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 248 >gi|262166224|ref|ZP_06033961.1| flagellar biosynthesis protein FliP [Vibrio mimicus VM223] gi|262025940|gb|EEY44608.1| flagellar biosynthesis protein FliP [Vibrio mimicus VM223] Length = 299 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 91/219 (41%), Positives = 139/219 (63%), Gaps = 5/219 (2%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 P + ++ + T+L P ++I++T F R ++V SILR MG+ P N V Sbjct: 84 TTNPDGSEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 143 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 II +ALF+TF++M+P ++ E +QP +N QI+ A EP FM TR KDL Sbjct: 144 IIGIALFLTFFIMAPVFNQINEQAVQPYLNEQISARQAFDLAQEPMKAFMLKQTRVKDLE 203 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 F++M+ S +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++ Sbjct: 204 TFVEMSGS-----QVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 258 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 259 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297 >gi|329901241|ref|ZP_08272766.1| Flagellar biosynthesis protein fliP [Oxalobacteraceae bacterium IMCC9480] gi|327549173|gb|EGF33765.1| Flagellar biosynthesis protein fliP [Oxalobacteraceae bacterium IMCC9480] Length = 251 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 95/246 (38%), Positives = 151/246 (61%), Gaps = 6/246 (2%) Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIA--PILLIMV 59 +R+ AL ++ ++ L + + P + + + + +++ P L+M+ Sbjct: 9 LRWSAVALVVLPLAAYAQQAGLPALTSTPTAGGGQNYTLSLQTLLLLTALSFLPAALLMM 68 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R IIV S+LR +G S PPN V++ LALF+T +VM P D+ PL N+I Sbjct: 69 TSFTRIIIVLSLLRQALGTQSAPPNQVMVGLALFLTLFVMGPVFDKIYADAYLPLQENKI 128 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 T A++R A P FM TR+ DL+L++ M++S + D + RIL+P+F+ S Sbjct: 129 NMTQAMERGAAPLKAFMMKQTRQADLALYVKMSNSP----ALQGPDDVPLRILVPAFITS 184 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+ +F+I F I +PFLIIDM+VA+++M+MGMMM+ P+ +SLPFK++ FVL+DGW LL+ Sbjct: 185 ELKTAFQISFAIFIPFLIIDMVVASVLMSMGMMMVSPSIVSLPFKLMLFVLVDGWQLLIG 244 Query: 240 NLVKSF 245 +L +SF Sbjct: 245 SLAQSF 250 >gi|127512307|ref|YP_001093504.1| flagellar biosynthesis protein FliP [Shewanella loihica PV-4] gi|126637602|gb|ABO23245.1| flagellar biosynthetic protein FliP [Shewanella loihica PV-4] Length = 255 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 89/238 (37%), Positives = 145/238 (60%), Gaps = 7/238 (2%) Query: 11 LVTPELVFAKSSLHDVMNIPADLSISTW---IVRTFGIFTILSIAPILLIMVTCFPRFII 67 ++ P+L A+ + + + ST ++ + T LS P ++IM+T F R I+ Sbjct: 20 VMAPQLALAQDGILPAVTVTTGADGSTQYSVTMQILLLMTALSFLPAMVIMLTSFTRIIV 79 Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127 V SILR +G+ P N V+I ++LFMTF++M+P D+ + ++P ++ +T A + Sbjct: 80 VLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDKIYDQAVKPYIDETMTIEQAYDK 139 Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187 EP FM TR DL F+ ++ +I + +LIP+F+ SEL+ +F+I Sbjct: 140 GKEPLRAFMLAQTRLTDLETFVQISG----YQNIQSPEDAPMSVLIPAFITSELKTAFQI 195 Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GF++ +PFL++D++VA+I+MAMGMMML P +SLPFK++ FVL+DGWSL++ L SF Sbjct: 196 GFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVMGTLANSF 253 >gi|328474450|gb|EGF45255.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus 10329] Length = 289 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 92/219 (42%), Positives = 137/219 (62%), Gaps = 5/219 (2%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 P + ++ + T+L P ++I++T F R ++V SILR MG+ P N V Sbjct: 74 TTNPDGSEDYSVTLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 133 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 II +ALF+TF+VMSP L+ + IQP +N Q+T A P FM TR KDL Sbjct: 134 IIGIALFLTFFVMSPVLNEINDTAIQPYLNEQVTAREAFDAAQVPMKAFMLKQTRIKDLE 193 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 F++M+ +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++ Sbjct: 194 TFVNMSG-----EQVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 248 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 249 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287 >gi|258621114|ref|ZP_05716148.1| Flagellar biosynthetic protein fliP [Vibrio mimicus VM573] gi|258626187|ref|ZP_05721035.1| Flagellar biosynthetic protein fliP [Vibrio mimicus VM603] gi|262170890|ref|ZP_06038568.1| flagellar biosynthesis protein FliP [Vibrio mimicus MB-451] gi|258581542|gb|EEW06443.1| Flagellar biosynthetic protein fliP [Vibrio mimicus VM603] gi|258586502|gb|EEW11217.1| Flagellar biosynthetic protein fliP [Vibrio mimicus VM573] gi|261891966|gb|EEY37952.1| flagellar biosynthesis protein FliP [Vibrio mimicus MB-451] Length = 299 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 91/219 (41%), Positives = 139/219 (63%), Gaps = 5/219 (2%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 P + ++ + T+L P ++I++T F R ++V SILR MG+ P N V Sbjct: 84 TTNPDGSEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 143 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 II +ALF+TF++M+P ++ E +QP +N QI+ A EP FM TR KDL Sbjct: 144 IIGIALFLTFFIMAPVFNQINEQAVQPYLNEQISARQAFDLAQEPMKAFMLKQTRIKDLE 203 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 F++M+ S +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++ Sbjct: 204 TFVEMSGS-----QVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 258 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 259 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297 >gi|149188095|ref|ZP_01866390.1| flagellar biosynthesis protein P [Vibrio shilonii AK1] gi|148838083|gb|EDL55025.1| flagellar biosynthesis protein P [Vibrio shilonii AK1] Length = 287 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 94/218 (43%), Positives = 142/218 (65%), Gaps = 5/218 (2%) Query: 28 NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87 P + ++ + T+L P ++I++T F R ++V SILR MG+ P N VI Sbjct: 73 TNPDGSEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVI 132 Query: 88 ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147 I +A+F+TF++MSP L++ + IQP +N QIT A Q+ P FM TR KDL Sbjct: 133 IGIAIFLTFFIMSPVLNQVNDQAIQPYLNEQITAKEAFQQAQGPMKSFMLKQTRVKDLET 192 Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 F++M+ S+ +N + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+I+M Sbjct: 193 FVEMSGSTAQN-----PEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASILM 247 Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 AMGMMML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 248 AMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 285 >gi|77463634|ref|YP_353138.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides 2.4.1] gi|77388052|gb|ABA79237.1| Flagellar transport protein FliP [Rhodobacter sphaeroides 2.4.1] Length = 301 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 89/220 (40%), Positives = 138/220 (62%), Gaps = 4/220 (1%) Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85 + + + ++ + T L++ P L++ ++ F R IIV SILR +G PPN Sbjct: 83 TVTEGTGGTSYSLSLQILALMTALTVLPSLVLGMSAFTRIIIVLSILRQALGTQQTPPNQ 142 Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145 V+I+LALF+TF+VM PTL E + P ++ QI AI+R F+ NTR+ DL Sbjct: 143 VLIALALFLTFFVMQPTLGALYEQSLSPFLDGQIEAQPAIERGGAIMKDFLIANTRQNDL 202 Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205 +F D+A + + + + L+P+FM SEL+ +F+IGFL+ LPFL+IDM++A+I Sbjct: 203 LMFSDLAGAG----PYAEPTEVPFSTLLPAFMTSELKTAFQIGFLLFLPFLVIDMVIASI 258 Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MA+GMMML P +SLPFK++ FVL+DGW+L V +L ++ Sbjct: 259 LMALGMMMLSPMLVSLPFKLLLFVLVDGWALTVGSLAATY 298 >gi|85058021|ref|YP_453723.1| flagellar biosynthesis protein FliP [Sodalis glossinidius str. 'morsitans'] gi|84778541|dbj|BAE73318.1| flagellar protein FliP [Sodalis glossinidius str. 'morsitans'] Length = 256 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 95/228 (41%), Positives = 145/228 (63%), Gaps = 4/228 (1%) Query: 18 FAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMG 77 A+ L + +P + V+T + T L+ P L++++ F R IIV SILR +G Sbjct: 31 AAQQGLIQMHPLPDGGQRWSLPVQTLVLLTSLTFLPAALLLMSGFTRIIIVLSILRNALG 90 Query: 78 MGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMR 137 S PPN +++ LAL +TF+VMSP LD P +QI TAI+R A+P FM Sbjct: 91 TPSAPPNQILLGLALCLTFFVMSPVLDSIYRDAYLPFSQDQIDMDTAIERAAQPLRQFML 150 Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197 TRE DLSL+ + + + + +IL+P+F+ SEL+ +F+IGF + +PFLI Sbjct: 151 TQTRETDLSLYARL----GKQAAFAGPEQVPMQILLPAFVTSELKTAFQIGFTLFIPFLI 206 Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ID+++A+++MA+GMMMLPPT++SLPFK++ FV++DGW LL+ +L +SF Sbjct: 207 IDLVIASVLMALGMMMLPPTTVSLPFKLMLFVMVDGWQLLLGSLAQSF 254 >gi|311068157|ref|YP_003973080.1| flagellar biosynthesis protein FliP [Bacillus atrophaeus 1942] gi|310868674|gb|ADP32149.1| flagellar biosynthesis protein FliP [Bacillus atrophaeus 1942] Length = 221 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 98/215 (45%), Positives = 147/215 (68%), Gaps = 4/215 (1%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 +D + V+ + T+ S+AP +LI++TCF R +IV S +RT + S+PPN V+I L Sbjct: 11 SDPDNVSSTVKLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATQSMPPNQVLIGL 70 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 ALF+TF++M+PT + + PLM+N+I+ A + EP FM +TR+KDL+LFM+ Sbjct: 71 ALFLTFFIMAPTFSDINKEALTPLMDNKISLDEAYTKAEEPIKEFMSKHTRQKDLALFMN 130 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 A I ++P+F ISEL+ +F+IGF+I +PFLIIDM+VA+++M+MG Sbjct: 131 YAKMDKPE----SLKDIPLTTMVPAFAISELKTAFQIGFMIFIPFLIIDMVVASVLMSMG 186 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMMLPP ISLPFK++ FVL+DGW L+V++L++SF Sbjct: 187 MMMLPPVMISLPFKILLFVLVDGWYLIVKSLLQSF 221 >gi|218133679|ref|ZP_03462483.1| hypothetical protein BACPEC_01548 [Bacteroides pectinophilus ATCC 43243] gi|217991054|gb|EEC57060.1| hypothetical protein BACPEC_01548 [Bacteroides pectinophilus ATCC 43243] Length = 278 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 93/215 (43%), Positives = 146/215 (67%), Gaps = 2/215 (0%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 D S +++ + TI+S+AP +L+++T F R +IV R +G+ ++PPN V+I L Sbjct: 65 GDGSDMASVLQMLLVLTIISLAPSILMLLTSFTRIVIVLHFTRAALGVQTIPPNQVLIGL 124 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 ++F+TF+VMSPT + + I+PL NN+IT A +P FM KDL F++ Sbjct: 125 SIFLTFFVMSPTFTQVYDSAIKPLSNNEITTEQAFDAGIKPMRAFMLKQVSTKDLDTFLN 184 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 +A + I D I +LIP+F+ISELR +F IGFLI +PF++IDM+V++++M+MG Sbjct: 185 IAGTE--AGSIENEDDIPLNVLIPAFIISELRIAFIIGFLIYIPFIVIDMVVSSVLMSMG 242 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMMLPPT+IS+PFK++ FV+ DGW+L++ NL+++F Sbjct: 243 MMMLPPTTISMPFKILLFVMADGWNLVIGNLMQTF 277 >gi|90411033|ref|ZP_01219047.1| flagellar biosynthesis protein [Photobacterium profundum 3TCK] gi|90328246|gb|EAS44557.1| flagellar biosynthesis protein [Photobacterium profundum 3TCK] Length = 284 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 95/221 (42%), Positives = 140/221 (63%), Gaps = 5/221 (2%) Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84 V P + ++ G+ T L P ++I++T F R ++V SILR MG+ P N Sbjct: 67 SVTTNPDGGEDYSVTLQILGLMTALGFLPAIVILMTSFTRIVVVLSILRQAMGLQQTPSN 126 Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144 VII +ALFMTF+VMSP +D+ +QP +N +IT A + P FM TR KD Sbjct: 127 QVIIGIALFMTFFVMSPVIDKVNIDAVQPYINEEITAAQAFETAQVPLRQFMLKQTRVKD 186 Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204 L F++M+ S+ T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+ Sbjct: 187 LESFVNMSGST-----ATAPEDVPITVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVAS 241 Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 242 VLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILTTLAGSF 282 >gi|262404469|ref|ZP_06081024.1| flagellar biosynthesis protein FliP [Vibrio sp. RC586] gi|262349501|gb|EEY98639.1| flagellar biosynthesis protein FliP [Vibrio sp. RC586] Length = 299 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 90/219 (41%), Positives = 138/219 (63%), Gaps = 5/219 (2%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 P + ++ + T+L P ++I++T F R ++V SILR MG+ P N V Sbjct: 84 TTNPDGSEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 143 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 II +ALF+TF++M+P ++ E +QP +N QI+ A EP FM TR KDL Sbjct: 144 IIGIALFLTFFIMAPVFNQINEQAVQPYLNEQISARQAFDLAQEPMKAFMLKQTRVKDLE 203 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 F++M+ +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++ Sbjct: 204 TFVEMSG-----AQVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 258 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 259 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297 >gi|24374730|ref|NP_718773.1| flagellar biosynthesis protein FliP [Shewanella oneidensis MR-1] gi|24349390|gb|AAN56217.1|AE015759_9 flagellar biosynthetic protein FliP [Shewanella oneidensis MR-1] Length = 247 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 145/247 (58%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIM 58 ++ + + L A L V A + + V + + T LS P ++IM Sbjct: 4 ILTFIGLSTLLFVTSAGAADGVLPAVTVKTAADGSTEYSVTMQILLLMTSLSFIPAMVIM 63 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R I+V SILR +G+ P N V+I ++LFMTF++M+P D+ + G++P ++ Q Sbjct: 64 LTSFTRIIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDKIYDQGVKPYIDEQ 123 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 +T A + EP FM R DL F+D++ +I + +L+P+F+ Sbjct: 124 LTLQQAFDKGKEPLRAFMLGQVRTTDLKTFIDISG----YQNINSPEEAPMSVLVPAFIT 179 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK++ FVL+DGW L++ Sbjct: 180 SELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWGLVM 239 Query: 239 ENLVKSF 245 L SF Sbjct: 240 GTLANSF 246 >gi|17989425|ref|NP_542058.1| flagellar biosynthesis protein FliP [Brucella melitensis bv. 1 str. 16M] gi|256043079|ref|ZP_05446023.1| flagellar biosynthesis protein FliP [Brucella melitensis bv. 1 str. Rev.1] gi|260564309|ref|ZP_05834794.1| flagellar transporter FliP [Brucella melitensis bv. 1 str. 16M] gi|265989517|ref|ZP_06102074.1| flagellar biosynthetic protein FliP [Brucella melitensis bv. 1 str. Rev.1] gi|17985302|gb|AAL54322.1| flagellar biosynthetic protein flip [Brucella melitensis bv. 1 str. 16M] gi|260151952|gb|EEW87045.1| flagellar transporter FliP [Brucella melitensis bv. 1 str. 16M] gi|263000186|gb|EEZ12876.1| flagellar biosynthetic protein FliP [Brucella melitensis bv. 1 str. Rev.1] Length = 246 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 129/240 (53%), Positives = 174/240 (72%), Gaps = 4/240 (1%) Query: 7 FALFLVTPELVFAKSSLHDVMNIPAD-LSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65 L L A+ +L +PA + S IV+ FG+ T+LSIAP LLIMVT F RF Sbjct: 9 VILTLALTVSAQAQQALPLDKLLPAGSGAASGQIVQLFGLLTVLSIAPGLLIMVTSFTRF 68 Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 I FS+LR+G+G+ + P ++V+ISLALFMTFYVM+P DR+ G+QPLM N+I + A Sbjct: 69 AIAFSLLRSGLGLQTAPASMVMISLALFMTFYVMAPAFDRAWNNGVQPLMRNEIMQEAAF 128 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185 +++PF FM R+KDL LF D+A S R +D +++R+L+P+FMISELRR F Sbjct: 129 GEISQPFREFMMAQVRDKDLRLFEDLADPSFRTSDDGI---VDFRVLVPAFMISELRRGF 185 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 EIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW++LV +L++SF Sbjct: 186 EIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245 >gi|207092164|ref|ZP_03239951.1| flagellar biosynthesis protein FliP [Helicobacter pylori HPKX_438_AG0C1] Length = 266 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 106/244 (43%), Positives = 162/244 (66%), Gaps = 6/244 (2%) Query: 4 YCFFALFLVTPELVF--AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61 + L+ P + A S++ +N P D + + T+L +AP L++++T Sbjct: 24 FLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTS 83 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F R I+VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+ Sbjct: 84 FTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISY 143 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 T A ++ A PF FM NTREKDL+LF + + + T D + +LIP+FMISEL Sbjct: 144 TEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISEL 199 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 + +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENL Sbjct: 200 KTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENL 259 Query: 242 VKSF 245 V SF Sbjct: 260 VASF 263 >gi|238782830|ref|ZP_04626859.1| Flagellar biosynthetic protein fliP [Yersinia bercovieri ATCC 43970] gi|238716253|gb|EEQ08236.1| Flagellar biosynthetic protein fliP [Yersinia bercovieri ATCC 43970] Length = 257 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 98/215 (45%), Positives = 147/215 (68%), Gaps = 4/215 (1%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 AD + V+T + T L+ P +L+M+T F R IIV +LR +G S PPN V+++L Sbjct: 45 ADGENWSLPVQTLVLLTSLTFLPAILLMMTGFTRIIIVLGLLRNALGTPSTPPNQVLLAL 104 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 ALF+TFYVMSP ++ + QPL ++I+ TA++R +P VFM TRE DL+L+ Sbjct: 105 ALFLTFYVMSPVFNQIYKEAWQPLSEDKISMETALERGVQPLRVFMLEQTRESDLALYAR 164 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 MA + + D + R+L+P+F+ SEL+ F+IGF + +PFLIID++VA+++MA+G Sbjct: 165 MA----KEENFQSKDDVPLRVLLPAFVTSELKTGFQIGFTVFIPFLIIDLVVASVLMALG 220 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 221 MMMVPPATISLPFKLMLFVLVDGWQLLMGSLAQSF 255 >gi|296534353|ref|ZP_06896817.1| flagellar biosynthetic protein FliP [Roseomonas cervicalis ATCC 49957] gi|296265319|gb|EFH11480.1| flagellar biosynthetic protein FliP [Roseomonas cervicalis ATCC 49957] Length = 258 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 105/224 (46%), Positives = 154/224 (68%), Gaps = 4/224 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 SL+ + P + +T +V+ + +LS+AP LL+MVT F R IV S+LR+ +G V Sbjct: 35 SLNLDLGQPGEAGATTRLVQLTALIGLLSLAPSLLVMVTAFARISIVLSLLRSAIGAPGV 94 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PPN V+I LALF+TF+VM P L+ S G+QP+ Q+ E +Q AEPF FM + R Sbjct: 95 PPNPVLIGLALFLTFFVMQPVLEASWTQGLQPMAAGQLGEIEGLQAAAEPFRGFMLAHAR 154 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 + D++LF+D+A+ +R+L+P+F++ ELRR+FEIGFLI LPFL+ID++ Sbjct: 155 DSDIALFLDLANLPAVEEPART----PWRVLVPAFLVGELRRAFEIGFLIFLPFLVIDIV 210 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 VA+++M +GMMMLPP ++SLPFK+IFFVL+DGW L+ +LV+ F Sbjct: 211 VASVLMGLGMMMLPPNTVSLPFKLIFFVLVDGWRLVSGSLVQGF 254 >gi|161484783|ref|NP_669792.2| flagellar biosynthesis protein FliP [Yersinia pestis KIM 10] gi|161511402|ref|NP_992929.2| flagellar biosynthesis protein FliP [Yersinia pestis biovar Microtus str. 91001] gi|161760581|ref|YP_070220.2| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis IP 32953] gi|162100177|ref|YP_651108.2| flagellar biosynthesis protein FliP [Yersinia pestis Antiqua] gi|162139435|ref|YP_648231.2| flagellar biosynthesis protein FliP [Yersinia pestis Nepal516] gi|167401077|ref|ZP_02306580.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua str. UG05-0454] gi|115347552|emb|CAL20461.1| flagellar biosynthetic protein FliP [Yersinia pestis CO92] gi|167049466|gb|EDR60874.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua str. UG05-0454] Length = 246 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 98/242 (40%), Positives = 150/242 (61%), Gaps = 8/242 (3%) Query: 6 FFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFP 63 L L V A+ L +++ P +W V+T T LS P L+M+T F Sbjct: 9 LGLLTLFCSPSVLAQ--LPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFT 66 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 R IIV +LR MG S PPN V++ LALF+TF++MSP D+ + P ++I+ Sbjct: 67 RIIIVLGLLRNAMGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQEAYLPFSQDKISMDV 126 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 A+ + ++P FM TRE DL+L+ +A+ + + + RIL+P+++ SEL+ Sbjct: 127 ALDKGSQPLREFMLRQTRESDLALYARLANLP----PLEGPEMVPMRILLPAYVTSELKT 182 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 +F+IGF + +PFLIID++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L + Sbjct: 183 AFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQ 242 Query: 244 SF 245 SF Sbjct: 243 SF 244 >gi|222823982|ref|YP_002575556.1| flagellar biosynthesis protein FliP [Campylobacter lari RM2100] gi|222539204|gb|ACM64305.1| flagellar biosynthesis protein FliP [Campylobacter lari RM2100] Length = 244 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 99/225 (44%), Positives = 154/225 (68%), Gaps = 4/225 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 +++ ++ P + + TIL++AP ++ ++T F R ++VFS LRT +G ++ Sbjct: 23 TVNLSLSAPNSPQQLVTTLNIVIVLTILALAPTIVFVMTSFLRLVVVFSFLRTALGTQTM 82 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PPN ++++LAL +TF++M P +S GI+P + QI A + +PF FM NTR Sbjct: 83 PPNTILVTLALILTFFIMEPVATKSYNEGIKPYIAEQIGYEEAFAKGVKPFKDFMLKNTR 142 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 EKDL+LF + + + T D + +L+P+FMISEL+ +FEIGFL+ LPFL+IDM+ Sbjct: 143 EKDLALFYRIRNLENPKT----IDDVPLTVLVPAFMISELKTAFEIGFLLFLPFLVIDMV 198 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 V++++MAMGMMMLPP IS+PFK++ FVL+DGW+LL++NLVKSF+ Sbjct: 199 VSSVLMAMGMMMLPPVMISMPFKLLIFVLVDGWNLLIQNLVKSFL 243 >gi|154253010|ref|YP_001413834.1| flagellar biosynthetic protein FliP [Parvibaculum lavamentivorans DS-1] gi|154156960|gb|ABS64177.1| flagellar biosynthetic protein FliP [Parvibaculum lavamentivorans DS-1] Length = 248 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 113/239 (47%), Positives = 166/239 (69%), Gaps = 4/239 (1%) Query: 7 FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66 AL L++ + + +++ +L ++ IV+ + T+LS+AP +LIMVT F R I Sbjct: 12 LALVLLSFGVAQPAFAQAIQVDLSDNLGLTDHIVQIVALVTVLSLAPSILIMVTSFVRII 71 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 +V S+LRT +GM PPN V++SLALF+T +VM+PT + GI+PLMN QI A + Sbjct: 72 VVLSLLRTALGMQQSPPNAVLVSLALFLTAFVMTPTFTTAYNEGIEPLMNQQIETAEAFE 131 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 R + PF FM + R++DL LF+D++ + I ++++P+FMISELRR+FE Sbjct: 132 RSSVPFKTFMLSQVRKQDLQLFVDLSQTEQPEEAT----DIGLQVIVPAFMISELRRAFE 187 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGFL+ LPF++IDM+VA+++M+MGMMMLPP ISLPFK+IFFVL+DGWSL+ +LV+SF Sbjct: 188 IGFLVFLPFIVIDMVVASVLMSMGMMMLPPVIISLPFKLIFFVLVDGWSLIAGSLVQSF 246 >gi|117919800|ref|YP_868992.1| flagellar biosynthesis protein FliP [Shewanella sp. ANA-3] gi|117612132|gb|ABK47586.1| flagellar biosynthetic protein FliP [Shewanella sp. ANA-3] Length = 248 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 146/247 (59%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIM 58 ++ + + L + A L V A + + V + + T LS P ++IM Sbjct: 5 ILTFIGVSTLLFAASVGAADGVLPAVTVKTAADGSTEYSVTMQILLLMTSLSFIPAMVIM 64 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R I+V SILR +G+ P N V+I ++LFMTF++M+P D+ + G++P ++ Q Sbjct: 65 LTSFTRIIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDKIYDQGVKPYIDEQ 124 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 +T A + EP FM R DL F+D++ +I + +L+P+F+ Sbjct: 125 LTLQQAFDKGKEPLRAFMLGQVRTTDLKTFIDISG----YQNINSPEEAPMSVLVPAFIT 180 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK++ FVL+DGW L++ Sbjct: 181 SELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWGLVM 240 Query: 239 ENLVKSF 245 L SF Sbjct: 241 GTLANSF 247 >gi|296330850|ref|ZP_06873325.1| flagellar biosynthesis protein FliP [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|296151855|gb|EFG92729.1| flagellar biosynthesis protein FliP [Bacillus subtilis subsp. spizizenii ATCC 6633] Length = 221 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 98/217 (45%), Positives = 147/217 (67%), Gaps = 4/217 (1%) Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88 +D + V+ + T+ S+AP +LI++TCF R +IV S +RT + S+PPN V+I Sbjct: 9 SSSDPENVSSTVKLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATQSMPPNQVLI 68 Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148 LALF+TF++M+PT + + PLM+N+I+ A + EP FM +TR+KDL+LF Sbjct: 69 GLALFLTFFIMAPTFSEINKEALTPLMDNKISLDEAYSKAEEPIKEFMSKHTRQKDLALF 128 Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208 M+ A I ++P+F ISEL+ +F+IGF+I +PFLIIDM+VA+++M+ Sbjct: 129 MNYAKMDKPE----SLKDIPLTTMVPAFAISELKTAFQIGFMIFIPFLIIDMVVASVLMS 184 Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MGMMMLPP ISLPFK++ FVL+DGW L+V++L++SF Sbjct: 185 MGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLLQSF 221 >gi|332531133|ref|ZP_08407047.1| flagellar biosynthesis protein FliP [Hylemonella gracilis ATCC 19624] gi|332039418|gb|EGI75830.1| flagellar biosynthesis protein FliP [Hylemonella gracilis ATCC 19624] Length = 267 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 96/224 (42%), Positives = 140/224 (62%), Gaps = 4/224 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 SL + + + ++T FT LS P +L+M+T F R +IV S+LR +G S Sbjct: 46 SLPLLTASNRGGTSYSVPIQTLLFFTALSFLPAVLLMMTGFTRIVIVLSLLRQALGTQSA 105 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PPN VII L+LF+TF+VM PT DR QP N +T A+ R P FM TR Sbjct: 106 PPNQVIIGLSLFLTFFVMGPTFDRVYAEAYQPYTRNALTFEQAVDRAEVPVREFMSKQTR 165 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 + DL+LF+ ++ T ++ R+LIP+F+ SEL+ +F+ GFLI +PFL+IDM+ Sbjct: 166 QSDLALFVRLSKL----DAATTAENAPMRVLIPAFVTSELKTAFQFGFLIFIPFLVIDMV 221 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 VA+++M++GMMML P ++LPFK++ FVL DGW+LL+ +L SF Sbjct: 222 VASVLMSLGMMMLSPVLVALPFKLMLFVLADGWNLLIGSLAASF 265 >gi|4322007|gb|AAD15910.1| polar flagellar assembly protein FliP [Vibrio parahaemolyticus] Length = 289 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 92/219 (42%), Positives = 137/219 (62%), Gaps = 5/219 (2%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 P + ++ + T+L P ++I++T F R ++V SILR MG+ P N V Sbjct: 74 TTNPDGSEDYSVTLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 133 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 II +ALF+TF+VMSP L+ + IQP +N Q+T A P FM TR KDL Sbjct: 134 IIGIALFLTFFVMSPVLNEINDTAIQPYLNEQVTAREAFDAAQVPMKAFMLKQTRIKDLE 193 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 F++M+ +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++ Sbjct: 194 TFVNMSG-----EQVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 248 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 249 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287 >gi|208434601|ref|YP_002266267.1| flagellar biosynthetic protein [Helicobacter pylori G27] gi|208432530|gb|ACI27401.1| flagellar biosynthetic protein [Helicobacter pylori G27] Length = 260 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 104/227 (45%), Positives = 157/227 (69%), Gaps = 4/227 (1%) Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 A S++ +N P D + + T+L +AP L++++T F R I+VFS LRT +G Sbjct: 35 ALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGT 94 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ A PF FM Sbjct: 95 QQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLK 154 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 NTREKDL+LF + + + T D + +LIP+FMISEL+ +F+IGFL+ LPFL+I Sbjct: 155 NTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVI 210 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 DM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENLV SF Sbjct: 211 DMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 257 >gi|308273529|emb|CBX30131.1| Flagellar biosynthetic protein fliP [uncultured Desulfobacterium sp.] Length = 225 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 97/229 (42%), Positives = 147/229 (64%), Gaps = 4/229 (1%) Query: 18 FAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMG 77 A SL + + + +++ + T+LS+AP +LIM+T F R IVFS LR +G Sbjct: 1 MAFPSLRIGVEPGENPEQVSVLIQILFLLTVLSLAPAILIMMTPFTRLAIVFSFLRQALG 60 Query: 78 MGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMR 137 P N +I L+LF+TF++M P +QP + +I++ TA++ P FM Sbjct: 61 TQQTPSNQIIAGLSLFITFFIMMPQWQEINNNALQPYLEKKISQETALKEAMIPIRKFMF 120 Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197 TREKDL++F+ M+ S N + I LIP+F+ISEL+ +F IGF++ +PFLI Sbjct: 121 RQTREKDLAIFVKMSKSEKPN----SPEDISMTTLIPAFVISELKTAFIIGFVLFVPFLI 176 Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 IDM+VA+++++MGMMMLPP ISLPFK++ FVL+DGW+L+V ++VKSF+ Sbjct: 177 IDMVVASVLLSMGMMMLPPILISLPFKLMLFVLVDGWNLIVGSMVKSFV 225 >gi|120598260|ref|YP_962834.1| flagellar biosynthesis protein FliP [Shewanella sp. W3-18-1] gi|146293662|ref|YP_001184086.1| flagellar biosynthesis protein FliP [Shewanella putrefaciens CN-32] gi|120558353|gb|ABM24280.1| flagellar biosynthetic protein FliP [Shewanella sp. W3-18-1] gi|145565352|gb|ABP76287.1| flagellar biosynthetic protein FliP [Shewanella putrefaciens CN-32] gi|319427061|gb|ADV55135.1| flagellar biosynthetic protein FliP [Shewanella putrefaciens 200] Length = 248 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 90/241 (37%), Positives = 144/241 (59%), Gaps = 6/241 (2%) Query: 7 FALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPR 64 A+ + + A L V A + + V + + T LS P ++IM+T F R Sbjct: 11 LAILFFSVSVGAADGVLPAVTVKTAADGSTEYSVTMQILLLMTSLSFLPAMVIMLTSFTR 70 Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124 I+V SILR +G+ P N V+I ++LFMTF++M+P D+ + G++P ++ Q+T A Sbjct: 71 IIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDKIYDQGVKPYIDEQLTLQQA 130 Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184 + EP FM R DL F+D++ +I + +L+P+F+ SEL+ + Sbjct: 131 FDKGKEPLRAFMLGQVRTTDLKTFIDISG----YQNINSPEEAPMSVLVPAFITSELKTA 186 Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK++ FVL+DGW L++ L S Sbjct: 187 FQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWGLVLGTLANS 246 Query: 245 F 245 F Sbjct: 247 F 247 >gi|261821163|ref|YP_003259269.1| flagellar biosynthesis protein FliP [Pectobacterium wasabiae WPP163] gi|261605176|gb|ACX87662.1| flagellar biosynthetic protein FliP [Pectobacterium wasabiae WPP163] Length = 258 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 104/244 (42%), Positives = 151/244 (61%), Gaps = 4/244 (1%) Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61 +RY L V+A+ +P T V+T T L+ P L+M+T Sbjct: 17 LRYSLAISLLFMAPSVWAQLPGIVTQPLPNGGQSWTLPVQTLVFLTSLTFIPAALLMMTS 76 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F R IIV S+LR +G + PPN V++ L LF+TF+VMSP L+R E P +QI+ Sbjct: 77 FTRIIIVLSLLRNALGTPTAPPNQVLLGLTLFLTFFVMSPVLNRVYEEAYLPFSQDQISM 136 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 AI+R AEP FM TRE DL+LF +A +I + + R+L+P+F+ SEL Sbjct: 137 EVAIERGAEPVREFMLRQTRETDLALFTRLAEIP----EIQGPEAVPMRVLLPAFVTSEL 192 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 + +F+IGF + +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L Sbjct: 193 KTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSL 252 Query: 242 VKSF 245 +SF Sbjct: 253 AQSF 256 >gi|212639551|ref|YP_002316071.1| flagellar biosynthesis protein FliP [Anoxybacillus flavithermus WK1] gi|212561031|gb|ACJ34086.1| Flagellar biosynthesis pathway, component FliP [Anoxybacillus flavithermus WK1] Length = 221 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 94/195 (48%), Positives = 136/195 (69%), Gaps = 4/195 (2%) Query: 51 IAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMG 110 IAP +LIMVT F R +IV S +RT +G +PPN V+I L+LF+TF++M+PT + Sbjct: 31 IAPGILIMVTSFTRIVIVLSFVRTALGTQQMPPNQVMIGLSLFLTFFIMAPTFQQINRDA 90 Query: 111 IQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYR 170 +QPL + +I A +R P FM +TR+KDL+LF+ A + T I Sbjct: 91 LQPLFDEKINLEQAYERAEAPLKEFMSKHTRQKDLALFLSYAGAEQPKT----VQDIPMS 146 Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230 L+P+F ISEL+ +F+IGF++ +PFL+IDMIVA+++M+MGMMMLPP ISLPFK++ FVL Sbjct: 147 ALVPAFAISELKTAFQIGFMLFIPFLVIDMIVASVLMSMGMMMLPPVMISLPFKILLFVL 206 Query: 231 IDGWSLLVENLVKSF 245 +DGW L+V++L++SF Sbjct: 207 VDGWYLVVKSLLESF 221 >gi|167040314|ref|YP_001663299.1| flagellar biosynthesis protein FliP [Thermoanaerobacter sp. X514] gi|256750756|ref|ZP_05491641.1| flagellar biosynthetic protein FliP [Thermoanaerobacter ethanolicus CCSD1] gi|300914398|ref|ZP_07131714.1| flagellar biosynthetic protein FliP [Thermoanaerobacter sp. X561] gi|307724366|ref|YP_003904117.1| flagellar biosynthetic protein FliP [Thermoanaerobacter sp. X513] gi|166854554|gb|ABY92963.1| flagellar biosynthetic protein FliP [Thermoanaerobacter sp. X514] gi|256750339|gb|EEU63358.1| flagellar biosynthetic protein FliP [Thermoanaerobacter ethanolicus CCSD1] gi|300889333|gb|EFK84479.1| flagellar biosynthetic protein FliP [Thermoanaerobacter sp. X561] gi|307581427|gb|ADN54826.1| flagellar biosynthetic protein FliP [Thermoanaerobacter sp. X513] Length = 221 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 92/223 (41%), Positives = 147/223 (65%), Gaps = 5/223 (2%) Query: 23 LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82 L D+++ S ++ + T+L++AP +LIM+T F R +IV S LR +G+ +P Sbjct: 3 LGDLVSSVTAPSNMATSLQIVLLLTVLTLAPSILIMMTSFTRIVIVLSFLRNALGLQQMP 62 Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142 PN V+I LALF+T ++M+P I+P +IT+ A Q +P FM TR+ Sbjct: 63 PNQVLIGLALFLTLFIMAPIGQDINNNAIKPYTEGKITQEEAYQNTIKPLKNFMLKQTRQ 122 Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202 DL+LF+ +A +I + + R++IP+F+ISEL+ +F+IGF++ +PFLIID++V Sbjct: 123 NDLNLFVSLA-----KININNVEELPMRVVIPAFIISELKTAFQIGFILYIPFLIIDIVV 177 Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 A+++M+MGM MLPP ISLPFKV+ F+L+DGW+L+V++L+ F Sbjct: 178 ASVLMSMGMFMLPPVLISLPFKVLLFILVDGWNLVVKSLILGF 220 >gi|26991044|ref|NP_746469.1| flagellar biosynthesis protein FliP [Pseudomonas putida KT2440] gi|24986076|gb|AAN69933.1|AE016632_4 flagellar biosynthetic protein FliP [Pseudomonas putida KT2440] gi|5921665|gb|AAD01927.2| FliP [Pseudomonas putida] gi|313497809|gb|ADR59175.1| FliP [Pseudomonas putida BIRD-1] Length = 251 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 96/220 (43%), Positives = 140/220 (63%), Gaps = 4/220 (1%) Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85 + N P + ++ I T LS P +I++T F R IIVFSILR +G+ P N Sbjct: 33 LSNTPDGQQEYSVSLQILLIMTALSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQ 92 Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145 ++ +ALF+T ++M+P DR + +QP + Q+T AI + P FM TR+ DL Sbjct: 93 LLTGMALFLTMFIMAPVFDRVNQDALQPYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDL 152 Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205 LFM ++ + TDI D + IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA++ Sbjct: 153 DLFMRLS----KRTDIAGPDQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASV 208 Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MAMGMMML P ISLPFK++ FVL+DGW+L++ L SF Sbjct: 209 LMAMGMMMLSPLIISLPFKIMLFVLVDGWALIMGTLASSF 248 >gi|212709502|ref|ZP_03317630.1| hypothetical protein PROVALCAL_00544 [Providencia alcalifaciens DSM 30120] gi|212687840|gb|EEB47368.1| hypothetical protein PROVALCAL_00544 [Providencia alcalifaciens DSM 30120] Length = 247 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 101/241 (41%), Positives = 147/241 (60%), Gaps = 4/241 (1%) Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64 AL L P+ A + + V+T T+L P +L+M+T F R Sbjct: 9 IISALLLALPQSASAALPAVISHTLADGGQSWSLPVQTLLFLTLLGFIPAMLLMMTSFTR 68 Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124 IIV +LR +G S PPN V++ LALF+TF+VMSP D+ QP ++I+ TA Sbjct: 69 IIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFVMSPVADQVYREAYQPFSEDKISLETA 128 Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184 +++ P FM TRE DL+LF +A DI + + RILIP+F+ SEL+ + Sbjct: 129 LEKGTAPLRTFMLGQTRESDLALFARIAKVG----DIQEAKDVPMRILIPAFITSELKTA 184 Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 F+IGF I +PFLIID++VA+++MA+GMMM+PP ++SLPFK++ FVL+DGW LL+ +L +S Sbjct: 185 FQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGWQLLLGSLSQS 244 Query: 245 F 245 F Sbjct: 245 F 245 >gi|210134891|ref|YP_002301330.1| flagellar biosynthesis protein FliP [Helicobacter pylori P12] gi|210132859|gb|ACJ07850.1| flagellar biosynthetic protein [Helicobacter pylori P12] Length = 260 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 106/244 (43%), Positives = 162/244 (66%), Gaps = 6/244 (2%) Query: 4 YCFFALFLVTPELVF--AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61 + L+ P + A S++ +N P D + + T+L +AP L++++T Sbjct: 18 FLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTS 77 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F R I+VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+ Sbjct: 78 FTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISY 137 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 T A ++ A PF FM NTREKDL+LF + + + T D + +LIP+FMISEL Sbjct: 138 TEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISEL 193 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 + +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENL Sbjct: 194 KTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENL 253 Query: 242 VKSF 245 V SF Sbjct: 254 VASF 257 >gi|16078698|ref|NP_389517.1| flagellar biosynthesis protein FliP [Bacillus subtilis subsp. subtilis str. 168] gi|221309513|ref|ZP_03591360.1| flagellar biosynthesis protein FliP [Bacillus subtilis subsp. subtilis str. 168] gi|221313837|ref|ZP_03595642.1| flagellar biosynthesis protein FliP [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318760|ref|ZP_03600054.1| flagellar biosynthesis protein FliP [Bacillus subtilis subsp. subtilis str. JH642] gi|221323032|ref|ZP_03604326.1| flagellar biosynthesis protein FliP [Bacillus subtilis subsp. subtilis str. SMY] gi|321315402|ref|YP_004207689.1| flagellar biosynthesis protein FliP [Bacillus subtilis BSn5] gi|544315|sp|P35528|FLIP_BACSU RecName: Full=Flagellar biosynthetic protein fliP gi|142931|gb|AAA22453.1| flagellar protein [Bacillus subtilis] gi|2634007|emb|CAB13508.1| component of the flagellar export machinery [Bacillus subtilis subsp. subtilis str. 168] gi|291484188|dbj|BAI85263.1| flagellar biosynthesis protein FliP [Bacillus subtilis subsp. natto BEST195] gi|320021676|gb|ADV96662.1| flagellar biosynthesis protein FliP [Bacillus subtilis BSn5] Length = 221 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 98/217 (45%), Positives = 147/217 (67%), Gaps = 4/217 (1%) Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88 +D + V+ + T+ S+AP +LI++TCF R +IV S +RT + S+PPN V+I Sbjct: 9 SSSDPENVSSTVKLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATQSMPPNQVLI 68 Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148 LALF+TF++M+PT + + PLM+N+I+ A + EP FM +TR+KDL+LF Sbjct: 69 GLALFLTFFIMAPTFSEINKEALTPLMDNKISLDEAYTKAEEPIKEFMSKHTRQKDLALF 128 Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208 M+ A I ++P+F ISEL+ +F+IGF+I +PFLIIDM+VA+++M+ Sbjct: 129 MNYAKMDKPE----SLKDIPLTTMVPAFAISELKTAFQIGFMIFIPFLIIDMVVASVLMS 184 Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MGMMMLPP ISLPFK++ FVL+DGW L+V++L++SF Sbjct: 185 MGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLLQSF 221 >gi|289578418|ref|YP_003477045.1| flagellar biosynthetic protein FliP [Thermoanaerobacter italicus Ab9] gi|297544694|ref|YP_003676996.1| flagellar biosynthetic protein FliP [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528131|gb|ADD02483.1| flagellar biosynthetic protein FliP [Thermoanaerobacter italicus Ab9] gi|296842469|gb|ADH60985.1| flagellar biosynthetic protein FliP [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 221 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 94/223 (42%), Positives = 147/223 (65%), Gaps = 5/223 (2%) Query: 23 LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82 L D+ + S ++ + T+L++AP +LIM+T F R +IV S LR +G+ +P Sbjct: 3 LGDLASSVTAPSNMATSLQIVLLLTVLTLAPSILIMMTSFTRIVIVLSFLRNALGLQQMP 62 Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142 PN V+I LALF+T ++M+P I+P +IT+ A Q +P FM TR+ Sbjct: 63 PNQVLIGLALFLTLFIMAPIGQDINNNAIKPYTEGKITQEEAYQNAIKPLKSFMLKQTRQ 122 Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202 DL+LF+ +A +++ + + R++IP+F+ISEL+ +FEIGF+I +PFLIID+IV Sbjct: 123 NDLNLFVSLA-----KINVSNVEDLPMRVVIPAFIISELKTAFEIGFIIYIPFLIIDIIV 177 Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 A+++M+MGM MLPP ISLPFKV+ F+L+DGW+L+V++L+ F Sbjct: 178 ASVLMSMGMFMLPPVLISLPFKVLLFILVDGWNLVVKSLILGF 220 >gi|261209859|ref|ZP_05924160.1| flagellar biosynthesis protein FliP [Vibrio sp. RC341] gi|260841045|gb|EEX67570.1| flagellar biosynthesis protein FliP [Vibrio sp. RC341] Length = 299 Score = 205 bits (523), Expect = 4e-51, Method: Composition-based stats. Identities = 90/219 (41%), Positives = 138/219 (63%), Gaps = 5/219 (2%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 P + ++ + T+L P ++I++T F R ++V SILR MG+ P N V Sbjct: 84 TTNPDGSEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 143 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 II +ALF+TF++M+P ++ E +QP +N QI+ A EP FM TR KDL Sbjct: 144 IIGIALFLTFFIMAPVFNQINEQAVQPYLNEQISARQAFDLAQEPMKAFMLKQTRVKDLE 203 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 F++M+ +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++ Sbjct: 204 TFVEMSG-----AQVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 258 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 259 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297 >gi|209695730|ref|YP_002263660.1| flagellar biosynthesis protein FliP [Aliivibrio salmonicida LFI1238] gi|208009683|emb|CAQ79982.1| polar flagellar assembly protein FliP [Aliivibrio salmonicida LFI1238] Length = 289 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 86/219 (39%), Positives = 137/219 (62%), Gaps = 5/219 (2%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 + + ++ G+ T+L P ++I++T F R ++V SILR MG+ P N V Sbjct: 74 TTNASGGEDYSVNLQILGLMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 133 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 II +A+F+TF++M+P D+ E IQP + +IT A P FM TR KDL Sbjct: 134 IIGIAMFLTFFIMAPVFDKVNETAIQPYIGEEITAREAFDAAQIPMKEFMLAQTRVKDLE 193 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 F++M+ ++ + + ++IP+F+ SEL+ +F++GF++ LPFLIID++VA+++ Sbjct: 194 TFVNMSGV-----EVENPEDVPITVVIPAFITSELKTAFQMGFMLFLPFLIIDLVVASVL 248 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 249 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287 >gi|28899013|ref|NP_798618.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus RIMD 2210633] gi|260365241|ref|ZP_05777798.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus K5030] gi|260878791|ref|ZP_05891146.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus AN-5034] gi|260897386|ref|ZP_05905882.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus Peru-466] gi|28807232|dbj|BAC60502.1| polar flagellar assembly protein FliP [Vibrio parahaemolyticus RIMD 2210633] gi|308088270|gb|EFO37965.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus Peru-466] gi|308094309|gb|EFO44004.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus AN-5034] gi|308115428|gb|EFO52968.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus K5030] Length = 289 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 92/219 (42%), Positives = 137/219 (62%), Gaps = 5/219 (2%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 P + ++ + T+L P ++I++T F R ++V SILR MG+ P N V Sbjct: 74 TTNPDGSEDYSVTLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 133 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 II +ALF+TF+VMSP L+ + IQP +N Q+T A P FM TR KDL Sbjct: 134 IIGIALFLTFFVMSPVLNEINDTAIQPYLNEQVTAREAFDAAQVPMKAFMLKQTRIKDLE 193 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 F++M+ +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++ Sbjct: 194 TFVNMSG-----EQVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 248 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 249 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287 >gi|251797428|ref|YP_003012159.1| flagellar biosynthetic protein FliP [Paenibacillus sp. JDR-2] gi|247545054|gb|ACT02073.1| flagellar biosynthetic protein FliP [Paenibacillus sp. JDR-2] Length = 256 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 101/238 (42%), Positives = 157/238 (65%), Gaps = 6/238 (2%) Query: 10 FLVTPELVFAKSSLHDVMNIPADLS--ISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67 ++ FA L ++ D S T + + T+LSIAP +L+++T F R +I Sbjct: 21 VMLLQSHAFAADPLPNLDISIGDGSEEPGTSALSLLLLITVLSIAPAILVLMTSFTRIVI 80 Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127 V +RT +G +PPN V+I LA+F+TF++M+PT + E+ +QP + +IT+T A+++ Sbjct: 81 VLGFVRTSLGTQQMPPNQVLIGLAMFLTFFIMAPTFSQVNEVALQPYLKGEITQTVALEK 140 Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187 A+P FM ++TREKDL LF++ + K I +L+P++ ISEL+ +F++ Sbjct: 141 AADPMKKFMISHTREKDLLLFLNYTKTEKPE----KYQDIPITVLVPAYAISELKTAFQM 196 Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GF+I +PFL+IDMIVA+ +MAMGMMMLPP ISLPFK++ FVL+DGW L+V++L+ SF Sbjct: 197 GFMIFIPFLVIDMIVASTLMAMGMMMLPPVMISLPFKLLLFVLVDGWYLIVKSLLLSF 254 >gi|109899342|ref|YP_662597.1| flagellar biosynthesis protein FliP [Pseudoalteromonas atlantica T6c] gi|109701623|gb|ABG41543.1| flagellar biosynthetic protein FliP [Pseudoalteromonas atlantica T6c] Length = 251 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 88/236 (37%), Positives = 140/236 (59%), Gaps = 5/236 (2%) Query: 12 VTPELVFAKSSLHDVMNIPADLSIS--TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVF 69 + P V A+ + + T ++ I T LS+ P ++M+T F R IIV Sbjct: 15 MVPSWVLAEPGIPALTMTENADGSQDYTMTLQVVAIMTALSLLPAFIMMMTSFTRIIIVL 74 Query: 70 SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129 SILR +G+ P N ++I ++LF++ ++M+P ++ E +QP ++ QIT A + Sbjct: 75 SILRQAIGLQQSPSNQILIGVSLFLSMFIMAPVFEKINETALQPYLSEQITSIQAYELAK 134 Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189 EP FM TR KDL F+++ + + +LIP+F+ SEL+ +F+IGF Sbjct: 135 EPLRGFMLAQTRIKDLETFVEI---GGYEDQFQEPADVPMNVLIPAFVTSELKTAFQIGF 191 Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++ +PFLI+D++VA+I+MAMGMMML P +SLPFK++ FVL+DGW+L+ L SF Sbjct: 192 MLFIPFLILDLVVASILMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLIFGTLANSF 247 >gi|114046865|ref|YP_737415.1| flagellar biosynthesis protein FliP [Shewanella sp. MR-7] gi|113888307|gb|ABI42358.1| flagellar biosynthetic protein FliP [Shewanella sp. MR-7] Length = 248 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 91/247 (36%), Positives = 146/247 (59%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIM 58 ++ F+ L + A L V A + + V + + T LS P ++IM Sbjct: 5 ILTLIGFSTLLFAASVGAADGVLPAVTVKTAADGSTEYSVTMQILLLMTSLSFIPAMVIM 64 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R I+V SILR +G+ P N V+I ++LFMTF++M+P D+ + G++P ++ Q Sbjct: 65 LTSFTRIIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDKIYDQGVKPYIDEQ 124 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 +T A + EP FM R DL F+D++ +I + +L+P+F+ Sbjct: 125 LTLQQAFDKGKEPLRAFMLGQVRTTDLKTFIDISG----YQNINSPEEAPMSVLVPAFIT 180 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK++ FVL+DGW L++ Sbjct: 181 SELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWGLVM 240 Query: 239 ENLVKSF 245 L SF Sbjct: 241 GTLANSF 247 >gi|85711032|ref|ZP_01042092.1| flagellar biosynthesis protein [Idiomarina baltica OS145] gi|85694945|gb|EAQ32883.1| flagellar biosynthesis protein [Idiomarina baltica OS145] Length = 249 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 97/247 (39%), Positives = 147/247 (59%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVM--NIPADLSISTWIVRTFGIFTILSIAPILLIM 58 ++ CF L L+ P++ A + V P + ++ I T L+ P ++IM Sbjct: 5 LLLGCFVLLALLLPDVANAMQDISAVTVKTNPDGSEEYSVTLQILAIMTALTFIPAMVIM 64 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R I+V +ILR +G+ P N V+I + LF+TF++MSP L + +QP +N + Sbjct: 65 MTSFTRIIVVLAILRQAIGLQQSPSNQVLIGITLFLTFFIMSPVLTEINDKALQPYLNEE 124 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 +T A+ R P FM TR D+ F D+A T+I + ILIPSF+ Sbjct: 125 VTSMEAVDRAKAPLKAFMLAQTRVTDIQTFADIAG----ETNIQSPEDTPMSILIPSFIT 180 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P +SLPFK++ FVL+DGW+L + Sbjct: 181 SELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLTM 240 Query: 239 ENLVKSF 245 L SF Sbjct: 241 STLAGSF 247 >gi|15895419|ref|NP_348768.1| flagellar biosynthesis protein FliP [Clostridium acetobutylicum ATCC 824] gi|15025142|gb|AAK80108.1|AE007715_13 Flagellar biosynthesis protein FliP [Clostridium acetobutylicum ATCC 824] gi|325509565|gb|ADZ21201.1| flagellar biosynthesis protein FliP [Clostridium acetobutylicum EA 2018] Length = 261 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 87/193 (45%), Positives = 134/193 (69%), Gaps = 4/193 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +++M+T F R I+V LRT MG PPN V+I LALF+T ++M PT + + IQ Sbjct: 71 PSIIMMMTSFTRIIVVLGFLRTSMGTQQSPPNQVLIGLALFLTMFIMMPTYKQINKNAIQ 130 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P +N I++ A+ + +P FM T +KDL LF+D+ + S + T D + + + Sbjct: 131 PYLNKSISQQQALLEMEKPLRTFMYKQTYQKDLKLFIDLDNQSGKIT----KDTVPFHDI 186 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 +P+F+ISEL+ +F IGFL+ +PFLIID++VA+I+M+MGMMMLPP +S+PFK++ F+++D Sbjct: 187 VPAFIISELKTAFTIGFLLYIPFLIIDLVVASILMSMGMMMLPPVMVSMPFKLLLFIMVD 246 Query: 233 GWSLLVENLVKSF 245 GW L+V++LV SF Sbjct: 247 GWYLIVKSLVLSF 259 >gi|325288789|ref|YP_004264970.1| flagellar biosynthetic protein FliP [Syntrophobotulus glycolicus DSM 8271] gi|324964190|gb|ADY54969.1| flagellar biosynthetic protein FliP [Syntrophobotulus glycolicus DSM 8271] Length = 250 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 108/242 (44%), Positives = 156/242 (64%), Gaps = 6/242 (2%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63 + +L L+ P+ V A D+ N P + + S ++ F I T+LS+ P +L+++T F Sbjct: 14 FILVSLLLLLPQGVRAAGINLDLGNTPVEQTSSA--IQIFLIMTVLSLVPAILVLMTSFT 71 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 R I+V S +R MG +PPN VII LAL +TF+VM+PT + I+P + NQI+ Sbjct: 72 RIIVVLSFVRNAMGTQQLPPNQVIIGLALILTFFVMAPTFSQVNTNAIKPYIENQISREE 131 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 A+ R P FM TREKDL+LF+ ++ T I +L+PSF+ISEL+ Sbjct: 132 ALTRAEAPLREFMIKQTREKDLALFVGLSQIPQPKTYR----DIPTYVLVPSFVISELKT 187 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 +F+IGF I +PF+IIDMIVA+ +M+MGMMMLPP ISLPFK++ FV++DGW L+V++LV Sbjct: 188 AFQIGFAIFIPFMIIDMIVASTLMSMGMMMLPPMMISLPFKILLFVIVDGWYLIVQSLVA 247 Query: 244 SF 245 SF Sbjct: 248 SF 249 >gi|153803026|ref|ZP_01957612.1| flagellar biosynthetic protein FliP [Vibrio cholerae MZO-3] gi|124121424|gb|EAY40167.1| flagellar biosynthetic protein FliP [Vibrio cholerae MZO-3] Length = 299 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 89/206 (43%), Positives = 135/206 (65%), Gaps = 5/206 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + T+L P ++I++T F R ++V SILR MG+ P N VII +ALF+TF++M Sbjct: 97 LQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFIM 156 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +P ++ E +QP +N QIT A EP FM TR DL F++M+ Sbjct: 157 APVFNQINEQAVQPYLNEQITARQAFDLAQEPLKAFMLKQTRVNDLETFVEMSG-----A 211 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGMMML P + Sbjct: 212 QVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGMMMLSPMIV 271 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW+L++ L SF Sbjct: 272 SLPFKLMLFVLVDGWNLILSTLAGSF 297 >gi|163801855|ref|ZP_02195752.1| flagellar biosynthesis protein P [Vibrio sp. AND4] gi|159174363|gb|EDP59167.1| flagellar biosynthesis protein P [Vibrio sp. AND4] Length = 289 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 92/209 (44%), Positives = 136/209 (65%), Gaps = 5/209 (2%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + ++ + T+L P ++I++T F R ++V SILR MG+ P N VII +ALF+TF Sbjct: 84 SVTLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTF 143 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 +VMSP L+ + IQP +N Q+T A P FM TR KDL F+DM+ Sbjct: 144 FVMSPVLNEINDNAIQPYLNEQLTARQAFDTAQVPMKAFMLKQTRIKDLETFVDMSG--- 200 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGMMML P Sbjct: 201 --EQVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGMMMLSP 258 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +SLPFK++ FVL+DGW+L++ L SF Sbjct: 259 MIVSLPFKLMLFVLVDGWNLILSTLAGSF 287 >gi|32471369|ref|NP_864362.1| flagellar biosynthesis protein FliP [Rhodopirellula baltica SH 1] gi|32443210|emb|CAD72041.1| flagellar biosynthetic protein fliP-putative tr FT ansporter of flagellar proteins [Rhodopirellula baltica SH 1] Length = 336 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 88/229 (38%), Positives = 141/229 (61%), Gaps = 7/229 (3%) Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80 + D P L+ S ++ + T+LS+AP +L+M TC+ R IIV +LR +G+ S Sbjct: 107 AGGPDEWTSPEGLAGS---LQVMLLLTVLSLAPAILLMTTCYVRIIIVLGLLRQAIGLQS 163 Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ--ITETTAIQRVAEPFWVFMRN 138 +PP+ V+ S+ALFMT +VM+P R + I+P + + +T A ++ A P FM Sbjct: 164 LPPSQVMTSVALFMTLFVMTPVWTRVYDDAIKPYTDPEVEMTLEEAFEKGAIPIREFMAW 223 Query: 139 NTR--EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 R + + + + + D + R+L+P+F++SEL+ SF +GF I LPFL Sbjct: 224 QIREARNEDDVVLFYGYMDPDAVVPSTFDDVPLRVLLPAFILSELKTSFLMGFQIYLPFL 283 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 I+D++VA++ ++MGM+MLPP I+LPFK++ FVL+DGW L+VE L+ SF Sbjct: 284 IVDLVVASVTISMGMLMLPPAVIALPFKLLLFVLVDGWRLVVEMLMNSF 332 >gi|261344130|ref|ZP_05971774.1| flagellar biosynthetic protein FliP [Providencia rustigianii DSM 4541] gi|282567722|gb|EFB73257.1| flagellar biosynthetic protein FliP [Providencia rustigianii DSM 4541] Length = 247 Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats. Identities = 96/232 (41%), Positives = 145/232 (62%), Gaps = 4/232 (1%) Query: 14 PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73 P+ A ++ + V+T T+L P +L+M+T F R IIV +LR Sbjct: 18 PQSASAALPAVISHSLTDGGQSWSLPVQTLLFLTLLGFIPAMLLMMTSFTRIIIVLGLLR 77 Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133 +G S PPN V++ LALF+TF+VMSP D+ QP ++I+ TA+++ P Sbjct: 78 NALGTPSAPPNQVLLGLALFLTFFVMSPVADQVYREAYQPFSEDKISLETALEKGTAPLR 137 Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193 FM TRE DL+LF +A +I + + RIL+P+F+ SEL+ +F+IGF I + Sbjct: 138 TFMLGQTRESDLALFARIAKVG----EIQEAKDVPMRILVPAFITSELKTAFQIGFTIFI 193 Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 PFLIID++VA+++MA+GMMM+PP ++SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 194 PFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGWQLLLGSLSQSF 245 >gi|295097216|emb|CBK86306.1| flagellar biosynthetic protein FliP [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 247 Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats. Identities = 97/245 (39%), Positives = 153/245 (62%), Gaps = 4/245 (1%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 +I + L+ P ++ + + T ++T + + + P +L+M+T Sbjct: 5 LIARAATGVGLLLPVASALAANGDITLASSPGSAGWTLPIQTLLLLSGFTFIPAVLLMMT 64 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R +IV ++R +G + PPN V++ LALF+TF+VMSP L++ E QPL N+IT Sbjct: 65 GFTRIVIVLGLMRNALGTPTAPPNQVLVGLALFLTFFVMSPVLNQIYEQAWQPLQANKIT 124 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 TA++ +P FM TRE DL++F +A + +T + + IL+PSF+ SE Sbjct: 125 METALKEGVKPLRAFMLEQTREADLAMFARIAKTP----TLTGPEDVPLSILVPSFVTSE 180 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +F+IGF I +PFLIID++VA+I+MA+GMMM+PP +I+LPFK++ FVL+DGW LLV + Sbjct: 181 LKTAFQIGFTIFIPFLIIDLVVASILMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGS 240 Query: 241 LVKSF 245 L +SF Sbjct: 241 LAQSF 245 >gi|225159018|ref|ZP_03725328.1| Triacylglycerol lipase [Opitutaceae bacterium TAV2] gi|224802397|gb|EEG20659.1| Triacylglycerol lipase [Opitutaceae bacterium TAV2] Length = 297 Score = 205 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 82/223 (36%), Positives = 145/223 (65%), Gaps = 5/223 (2%) Query: 23 LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82 L + + ++ + T+L++AP L++++T F R +IV ++RT +G+ + P Sbjct: 78 LAIDLEGGGKPGEISVGLQIVVVMTLLTVAPSLILLMTSFTRLVIVLGLVRTALGVPNAP 137 Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142 N ++I L+LF+T ++M P + R+ + +QP M ++ A+ + AEP FM TR Sbjct: 138 ANQIVIGLSLFLTIFIMGPVIQRANQEALQPYMAGEMRSADALAKAAEPVKEFMLKQTRT 197 Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202 +DL F+ + T+ + R++IP+F+ISEL+ +F++GFL+ LPFL+ID++V Sbjct: 198 RDLEFFLQLGRFPP-----TRVQDLPLRVVIPAFVISELQTAFQMGFLLFLPFLVIDLLV 252 Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++ +M++GMMM+PP +SLPFK++ FVL+DGW L+V++LV+SF Sbjct: 253 SSTLMSLGMMMMPPAIVSLPFKLLLFVLVDGWHLVVKSLVESF 295 >gi|126462466|ref|YP_001043580.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides ATCC 17029] gi|126104130|gb|ABN76808.1| flagellar biosynthetic protein FliP [Rhodobacter sphaeroides ATCC 17029] Length = 301 Score = 205 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 89/220 (40%), Positives = 138/220 (62%), Gaps = 4/220 (1%) Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85 + + + ++ + T L++ P L++ ++ F R IIV SILR +G PPN Sbjct: 83 TVTEGTGGTSYSLSLQILALMTALTVLPSLVLGMSAFTRIIIVLSILRQALGTQQTPPNQ 142 Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145 V+I+LALF+TF+VM PTL E + P ++ QI AI+R F+ NTR+ DL Sbjct: 143 VLIALALFLTFFVMQPTLGALYEQSLSPFLDGQIEAQPAIERGGAIMKDFLIANTRQNDL 202 Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205 +F D+A + + + + L+P+FM SEL+ +F+IGFL+ LPFL+IDM++A+I Sbjct: 203 LMFSDLAGAG----PYAEPTEVPFSTLLPAFMTSELKTAFQIGFLLFLPFLVIDMVIASI 258 Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MA+GMMML P +SLPFK++ FVL+DGW+L V +L ++ Sbjct: 259 LMALGMMMLSPMLVSLPFKLLLFVLVDGWALTVGSLAATY 298 >gi|269103167|ref|ZP_06155864.1| flagellar biosynthesis protein FliP [Photobacterium damselae subsp. damselae CIP 102761] gi|268163065|gb|EEZ41561.1| flagellar biosynthesis protein FliP [Photobacterium damselae subsp. damselae CIP 102761] Length = 272 Score = 205 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 91/221 (41%), Positives = 140/221 (63%), Gaps = 5/221 (2%) Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84 V P + ++ + T L P ++I++T F R ++V SILR +G+ P N Sbjct: 55 SVTVNPDGSEDYSVTLQILALMTALGFLPAIVILMTSFTRIVVVMSILRQALGLQQTPSN 114 Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144 VII +ALF+TF+VMSP LDR +QP +N QIT A+++ P FM TR KD Sbjct: 115 QVIIGIALFLTFFVMSPVLDRINAQAVQPYINEQITAPQALEKAKVPMREFMLKQTRVKD 174 Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204 L F++++ + ++ + +LIP+F+ SEL+ +F+IGF++ LPFL+ID++VA+ Sbjct: 175 LETFVNISGAK-----VSDPQQVPMTVLIPAFITSELKTAFQIGFMLFLPFLVIDLVVAS 229 Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 230 VLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 270 >gi|296186695|ref|ZP_06855097.1| flagellar biosynthetic protein FliP [Clostridium carboxidivorans P7] gi|296048732|gb|EFG88164.1| flagellar biosynthetic protein FliP [Clostridium carboxidivorans P7] Length = 258 Score = 205 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 97/244 (39%), Positives = 150/244 (61%), Gaps = 8/244 (3%) Query: 6 FFALFLVTPELVFAKSSLHDVMNIPADLSISTWI----VRTFGIFTILSIAPILLIMVTC 61 F +F + ++ +NI D + + ++ + TIL+I P ++M+T Sbjct: 18 IFLMFAASKVYAAPEAFPIPKVNISVDNASTPQQYVGNIKLLIMLTILTILPSFIMMMTS 77 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F R I+VF LR MG PPN ++I LALF+T ++M P + IQP M N+IT+ Sbjct: 78 FVRIIVVFGFLRGAMGTQQSPPNTILIGLALFLTVFIMQPVYSKVNTNAIQPYMQNKITQ 137 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 AI A+P FM T +KD LF+D A +++ T D+ +++P+FMISEL Sbjct: 138 EQAIDEGAKPLRQFMLKYTYKKDFQLFIDTAKVNYKIT----KDNAPLYVVVPAFMISEL 193 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 + +F IGF++ +PF+IID++VA+++M+MGM MLPP +SLPFK++ FV++DGW LLV++L Sbjct: 194 KTAFMIGFMLYIPFMIIDLVVASVLMSMGMFMLPPAMVSLPFKLLLFVMVDGWYLLVKSL 253 Query: 242 VKSF 245 V SF Sbjct: 254 VSSF 257 >gi|311030115|ref|ZP_07708205.1| flagellar biosynthesis protein FliP [Bacillus sp. m3-13] Length = 221 Score = 205 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 97/217 (44%), Positives = 148/217 (68%), Gaps = 4/217 (1%) Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88 + S + V+ + T+ S+AP +LI++T F R IIV S +RT + S+PPN V+I Sbjct: 9 SGNEASTVSTSVQLLLLLTVFSLAPAILILMTSFTRIIIVLSFVRTSLATQSMPPNQVLI 68 Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148 LALF+TF++M+PT + + +QPL N +IT A ++ + P FM +TR+KDL+LF Sbjct: 69 GLALFLTFFIMAPTFSQVNDQALQPLFNEEITLDEAYEKASIPLKEFMSKHTRQKDLALF 128 Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208 +D A + I +L+P+F ISEL+ +F+IGF+I +PFL+IDM+VA+++M+ Sbjct: 129 IDYAGMERPE----SIEDIPLTVLVPAFAISELKTAFQIGFMIFIPFLVIDMVVASVLMS 184 Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MGMMMLPP ISLPFK++ FVL+DGW L+V++L+ +F Sbjct: 185 MGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLLLTF 221 >gi|156975420|ref|YP_001446327.1| flagellar biosynthesis protein FliP [Vibrio harveyi ATCC BAA-1116] gi|156527014|gb|ABU72100.1| hypothetical protein VIBHAR_03151 [Vibrio harveyi ATCC BAA-1116] Length = 289 Score = 205 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 91/209 (43%), Positives = 136/209 (65%), Gaps = 5/209 (2%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + ++ + T+L P ++I++T F R ++V SILR MG+ P N VII +ALF+TF Sbjct: 84 SVTLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTF 143 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 +VMSP L+ + IQP +N Q+T A P FM TR KDL F++M+ Sbjct: 144 FVMSPVLNEINDNAIQPYLNEQVTARQAFDAAQVPMKAFMLKQTRIKDLETFVNMSG--- 200 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGMMML P Sbjct: 201 --EQVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGMMMLSP 258 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +SLPFK++ FVL+DGW+L++ L SF Sbjct: 259 MIVSLPFKLMLFVLVDGWNLILSTLAGSF 287 >gi|308068668|ref|YP_003870273.1| flagellar biosynthetic protein fliP [Paenibacillus polymyxa E681] gi|310641559|ref|YP_003946317.1| flagellar transport protein flip [Paenibacillus polymyxa SC2] gi|305857947|gb|ADM69735.1| Flagellar biosynthetic protein fliP [Paenibacillus polymyxa E681] gi|309246509|gb|ADO56076.1| Flagellar transport protein FliP [Paenibacillus polymyxa SC2] Length = 251 Score = 205 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 92/249 (36%), Positives = 149/249 (59%), Gaps = 8/249 (3%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTW----IVRTFGIFTILSIAPILL 56 +I C + + A + ++I S + + T++S+AP LL Sbjct: 5 IILACLLLVLFSFISVTAASAEPIPNIDIQVGNSDKGQPGATSLSIILLITVISVAPALL 64 Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116 +++T F R +IV +RT +G +PPN V++ LALF+T ++M+PT E +QP + Sbjct: 65 VLMTSFTRIVIVLGFVRTSLGTQQMPPNQVLVGLALFLTLFIMAPTFSAMNETALQPYLK 124 Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176 IT++ A+ + + P FM ++TREKDL LFM I +++P++ Sbjct: 125 GDITQSQALDKASVPIKTFMFSHTREKDLLLFMKYTKMEKPK----NYQDIPLTVMVPAY 180 Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236 ISEL+ +F++GF+I +PFL+ID++V++ +MAMGMMMLPP ISLPFK++ FVL+DGW L Sbjct: 181 AISELKTAFQMGFMIFIPFLVIDIVVSSTLMAMGMMMLPPVMISLPFKILLFVLVDGWYL 240 Query: 237 LVENLVKSF 245 +V++L+ SF Sbjct: 241 VVKSLLLSF 249 >gi|312115243|ref|YP_004012839.1| flagellar biosynthetic protein FliP [Rhodomicrobium vannielii ATCC 17100] gi|311220372|gb|ADP71740.1| flagellar biosynthetic protein FliP [Rhodomicrobium vannielii ATCC 17100] Length = 265 Score = 205 bits (521), Expect = 6e-51, Method: Composition-based stats. Identities = 114/237 (48%), Positives = 162/237 (68%), Gaps = 11/237 (4%) Query: 14 PELVFAKSSLHDVMNIPA-----DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIV 68 P A+ + + + S+ I++ + T+LS+AP +LIMVTCF RF+I Sbjct: 34 PSSAAAQQTGGQFGGLASLFPETADGTSSRIIQLVLVITVLSLAPGILIMVTCFTRFVIA 93 Query: 69 FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128 S LR G+G+ S P N++++SLALFMT + MSPT D++ E G++P M+ +++E A Q++ Sbjct: 94 LSFLRVGLGLPSTPANIILVSLALFMTAFTMSPTFDKAWETGVKPFMDKKLSEDAAFQKI 153 Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188 +PF FM N R+KD+ LF M+ + R LIP+FMISELRR FEIG Sbjct: 154 TDPFREFMMANVRQKDIDLFAGMSPQASAEGATA------LRTLIPAFMISELRRGFEIG 207 Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 FLI+LPFL+ID+I +T++MAMGMMM+ PT++SLPFKV+FF+LIDGW+LLV NLV+SF Sbjct: 208 FLIMLPFLVIDLIASTVLMAMGMMMVSPTTVSLPFKVLFFILIDGWNLLVGNLVRSF 264 >gi|149908447|ref|ZP_01897110.1| flagellar biosynthesis protein [Moritella sp. PE36] gi|149808610|gb|EDM68545.1| flagellar biosynthesis protein [Moritella sp. PE36] Length = 248 Score = 205 bits (521), Expect = 6e-51, Method: Composition-based stats. Identities = 90/220 (40%), Positives = 137/220 (62%), Gaps = 5/220 (2%) Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85 V+ + ++ + T LS P LIM+T F R IIV SILR +G+ P N Sbjct: 32 VITNNDGSQEYSVSLQILAMMTALSFLPAALIMMTSFTRIIIVLSILRQALGLQQSPSNQ 91 Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145 V++ + LF++F++MSP DR + +QP ++ ++T A ++ P FM TR DL Sbjct: 92 VLVGITLFLSFFIMSPVFDRINDNALQPYLSEELTSMQAFEQAKLPMQQFMLAQTRVTDL 151 Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205 FM +A + + + +R+LIP+F+ SEL+ +F+IGF++ +PFLIID++VA+I Sbjct: 152 DTFMRIA-----KVEADSPEEVPFRVLIPAFVTSELKTAFQIGFMVFIPFLIIDLVVASI 206 Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MAMGMMML P +SLPFK++ FVL+DGWSL++ L SF Sbjct: 207 LMAMGMMMLSPMIVSLPFKLMLFVLVDGWSLILGTLANSF 246 >gi|302389676|ref|YP_003825497.1| flagellar biosynthetic protein FliP [Thermosediminibacter oceani DSM 16646] gi|302200304|gb|ADL07874.1| flagellar biosynthetic protein FliP [Thermosediminibacter oceani DSM 16646] Length = 254 Score = 205 bits (521), Expect = 6e-51, Method: Composition-based stats. Identities = 104/246 (42%), Positives = 156/246 (63%), Gaps = 7/246 (2%) Query: 4 YCFFALFLVTPELVFAKSSLH----DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 + + L P A D + + + ++ I TIL++AP +LIM+ Sbjct: 11 FLAAVILLSIPITALADPEPPIPMLDFVRSARNPQETALSLQVLLILTILTLAPSILIMM 70 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R +IVFS +R+G+G +PPN V+I LALF+TF+VM+P D + IQP M +I Sbjct: 71 TSFIRIVIVFSFVRSGLGTQQIPPNQVLIGLALFITFFVMAPVFDDINKNAIQPYMREEI 130 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 T A+Q +P FM TREKDL+LF+ A ++ + D + +LIP+F+IS Sbjct: 131 TTQEALQLAQKPLRDFMFRQTREKDLALFLYHAKLQNQ---VRTLDDVPTYVLIPAFIIS 187 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+ +F++GF+I +PFL+IDMIVA+ +M+MGM+MLPP ISLPFK++ FV++DGW+L+V Sbjct: 188 ELKTAFQMGFIIFVPFLVIDMIVASTLMSMGMLMLPPVMISLPFKILLFVMVDGWNLVVS 247 Query: 240 NLVKSF 245 +L+ SF Sbjct: 248 SLLSSF 253 >gi|294500924|ref|YP_003564624.1| flagellar biosynthetic protein FliP [Bacillus megaterium QM B1551] gi|294350861|gb|ADE71190.1| flagellar biosynthetic protein FliP [Bacillus megaterium QM B1551] Length = 222 Score = 205 bits (521), Expect = 6e-51, Method: Composition-based stats. Identities = 96/209 (45%), Positives = 148/209 (70%), Gaps = 4/209 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + V+ + T+ S+AP +LIM+TCF R +IV S +RT +G +PPN +++ L+LF+TF Sbjct: 17 STSVQLLLLLTVFSVAPGILIMMTCFTRIVIVLSFVRTSLGTQQMPPNQILVGLSLFLTF 76 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 ++M+PT + E +QPL+ +IT A ++ AEP FM +TR+KDL+LF++ A Sbjct: 77 FIMAPTFSQVNEQALQPLLKEKITLNQAYEKAAEPMKEFMSAHTRQKDLALFLEYADIDR 136 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 + I L+P++ ISEL+ +F+IGF+I +PFLIIDMI+A+++M+MGMMMLPP Sbjct: 137 P----SSVQDIPLTALVPAYAISELKTAFQIGFMIFIPFLIIDMIIASVLMSMGMMMLPP 192 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLPFK++ FVL+DGW+L+V++L+ SF Sbjct: 193 VMISLPFKILLFVLVDGWNLVVKSLLISF 221 >gi|254292926|ref|YP_003058949.1| flagellar biosynthetic protein FliP [Hirschia baltica ATCC 49814] gi|254041457|gb|ACT58252.1| flagellar biosynthetic protein FliP [Hirschia baltica ATCC 49814] Length = 255 Score = 205 bits (521), Expect = 6e-51, Method: Composition-based stats. Identities = 106/230 (46%), Positives = 157/230 (68%), Gaps = 4/230 (1%) Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 A + ++ +++ IV G+ TILS+AP +L+M T F R ++V S+LRT M Sbjct: 25 APAGIAQEFNFDLGTGAGMTSGIVEMLGVITILSLAPSILVMTTSFVRIVVVLSLLRTAM 84 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G+ PPN VIISL+LF+T +VM+PT + + + G++P M I A+ R A P FM Sbjct: 85 GLQQAPPNAVIISLSLFLTAFVMAPTFEAAYKEGVEPFMAESIGLEDALPRAAAPIKTFM 144 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 + ++ DL+LFM MA+ + + +++L P+FMISEL+R+FEIGF+I LPFL Sbjct: 145 AKHVQDDDLALFMGMANI----ETLESAEAAPFQVLAPAFMISELKRAFEIGFMIFLPFL 200 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +ID++VA+I+M+MGMMMLPP +IS+PFK+IFFVL+DGW LL +LV+SF+ Sbjct: 201 VIDLVVASILMSMGMMMLPPVTISMPFKLIFFVLVDGWRLLAGSLVESFV 250 >gi|295706270|ref|YP_003599345.1| flagellar biosynthetic protein FliP [Bacillus megaterium DSM 319] gi|294803929|gb|ADF40995.1| flagellar biosynthetic protein FliP [Bacillus megaterium DSM 319] Length = 222 Score = 205 bits (521), Expect = 6e-51, Method: Composition-based stats. Identities = 96/209 (45%), Positives = 148/209 (70%), Gaps = 4/209 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + V+ + T+ S+AP +LIM+TCF R +IV S +RT +G +PPN +++ L+LF+TF Sbjct: 17 STSVQLLLLLTVFSVAPGILIMMTCFTRIVIVLSFVRTSLGTQQMPPNQILVGLSLFLTF 76 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 ++M+PT + E +QPL+ +IT A ++ AEP FM +TR+KDL+LF++ A Sbjct: 77 FIMAPTFSQVNEQALQPLLKEKITLNQAYEKAAEPMKEFMSAHTRQKDLALFLEYADIDK 136 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 + I L+P++ ISEL+ +F+IGF+I +PFLIIDMI+A+++M+MGMMMLPP Sbjct: 137 P----SSVQDIPLTALVPAYAISELKTAFQIGFMIFIPFLIIDMIIASVLMSMGMMMLPP 192 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLPFK++ FVL+DGW+L+V++L+ SF Sbjct: 193 VMISLPFKILLFVLVDGWNLVVKSLLISF 221 >gi|226941268|ref|YP_002796342.1| flagellar biosynthesis protein FliP [Laribacter hongkongensis HLHK9] gi|226716195|gb|ACO75333.1| FliP [Laribacter hongkongensis HLHK9] Length = 251 Score = 204 bits (520), Expect = 6e-51, Method: Composition-based stats. Identities = 96/249 (38%), Positives = 154/249 (61%), Gaps = 10/249 (4%) Query: 3 RYCFFALFLVTPEL----VFAKSSLHDVMNIPADLSIS--TWIVRTFGIFTILSIAPILL 56 R+ F +L L A ++ + PA + + + + T L+ P LL Sbjct: 4 RFLFALPWLAMGGLLVADAAAAPNIPFMNASPAGGAGTQYSLSLEMLLFLTSLTFIPALL 63 Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116 +M+T F R +IV S+LR +G+ PPN VI+ L+LF+T +VM+P D++ P + Sbjct: 64 LMMTAFTRIVIVLSLLRQAIGLMQSPPNQVIVGLSLFLTLFVMAPVFDQAYREAWLPYSD 123 Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176 +Q+ A ++ +PF FM TREKDL+ F+++A + T + + LIP+F Sbjct: 124 SQMNFMQAAEKGVQPFKGFMLKQTREKDLAFFVEIAREAPPATPA----DVSLKTLIPAF 179 Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236 ++SEL+ +F+IGF++ +PFLIID++VA+++MAMGMMM+ P ISLPFK++ FVL+DGW+L Sbjct: 180 VVSELKTAFQIGFMVFIPFLIIDLVVASVLMAMGMMMVSPVIISLPFKLMLFVLVDGWTL 239 Query: 237 LVENLVKSF 245 L+ +LV+SF Sbjct: 240 LIGSLVQSF 248 >gi|327537629|gb|EGF24341.1| flagellar biosynthesis protein FliP [Rhodopirellula baltica WH47] Length = 316 Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats. Identities = 88/229 (38%), Positives = 141/229 (61%), Gaps = 7/229 (3%) Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80 + D P L+ S ++ + T+LS+AP +L+M TC+ R IIV +LR +G+ S Sbjct: 87 AGGPDEWTSPEGLAGS---LQVMLLLTVLSLAPAILLMTTCYVRIIIVLGLLRQAIGLQS 143 Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ--ITETTAIQRVAEPFWVFMRN 138 +PP+ V+ S+ALFMT +VM+P R + I+P + + +T A ++ A P FM Sbjct: 144 LPPSQVMTSVALFMTLFVMTPVWTRVYDDAIKPYTDPEVEMTLEEAFEKGAIPIREFMAW 203 Query: 139 NTR--EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 R + + + + + D + R+L+P+F++SEL+ SF +GF I LPFL Sbjct: 204 QIREARNEDDVVLFYGYMDPDAVVPSTFDDVPLRVLLPAFILSELKTSFLMGFQIYLPFL 263 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 I+D++VA++ ++MGM+MLPP I+LPFK++ FVL+DGW L+VE L+ SF Sbjct: 264 IVDLVVASVTISMGMLMLPPAVIALPFKLLLFVLVDGWRLVVEMLMNSF 312 >gi|328958270|ref|YP_004375656.1| flagellar biosynthesis protein FliP [Carnobacterium sp. 17-4] gi|328674594|gb|AEB30640.1| flagellar biosynthesis protein FliP [Carnobacterium sp. 17-4] Length = 254 Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 149/245 (60%), Gaps = 8/245 (3%) Query: 5 CFFALFLVTPELVFAKSSLHDVMNI----PADLSISTWIVRTFGIFTILSIAPILLIMVT 60 F L+ P++V A + + ++ ++ +V+ F + T LS+AP L++ T Sbjct: 13 LFLMSSLLFPQVVTAAEITDGLSGLSEALGSETGETSQVVQLFLLTTALSLAPTFLVLTT 72 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 CF R I+V S +R+ +G PPNLV++ +ALF++ ++M P + I P +N +I+ Sbjct: 73 CFTRIIVVLSFVRSSLGTQQNPPNLVLMGIALFLSLFIMQPVYTDVMNEAITPYINEEIS 132 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A + P FM TR++D+ LF+D++ ++ + + IP+F+ISE Sbjct: 133 GQAAFESAELPIKEFMYKQTRDEDIQLFLDISETAKP----ADVKELPLTVAIPAFIISE 188 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 LR +F IGFLI +PFL+ID++VA+I+M+MGM ML P ISLPFK++ FVL+DGW L+VE+ Sbjct: 189 LRTAFSIGFLIFIPFLVIDIVVASILMSMGMFMLSPVMISLPFKLLLFVLVDGWYLVVES 248 Query: 241 LVKSF 245 LV F Sbjct: 249 LVTGF 253 >gi|224826623|ref|ZP_03699724.1| flagellar biosynthetic protein FliP [Lutiella nitroferrum 2002] gi|224601224|gb|EEG07406.1| flagellar biosynthetic protein FliP [Lutiella nitroferrum 2002] Length = 248 Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats. Identities = 100/249 (40%), Positives = 151/249 (60%), Gaps = 8/249 (3%) Query: 1 MIRYCFFALFLVTPELVFA--KSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILL 56 M R+ F+ L+ + L + + PA ++ + + T LS P LL Sbjct: 1 MKRFLVFSGLLLAGLFPLLADAAGLPLMNSTPAAGGGQSYSLSLQMLLFMTALSFIPALL 60 Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116 +M+T F R IIV S+LR MG PPN V++ LALF+T +VM PT D+ P Sbjct: 61 LMMTSFTRIIIVLSLLRQAMGTMQAPPNQVLVGLALFLTLFVMGPTFDQVYSKAWVPFSE 120 Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176 ++I ++ ++P FM TREKDL+ F++++ S T + + LIP+F Sbjct: 121 DKIGFAQMLEEGSKPMREFMLKQTREKDLAFFIEVSQSPAPPTPA----EVSMKTLIPAF 176 Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236 +ISEL+ +F+IGF++ +PFLIID++VA+I+MAMGMMM+ P ISLPFK++ FVL+DGW+L Sbjct: 177 VISELKTAFQIGFMVFIPFLIIDLVVASILMAMGMMMVSPVIISLPFKLMLFVLVDGWTL 236 Query: 237 LVENLVKSF 245 L+ +LV+SF Sbjct: 237 LMGSLVRSF 245 >gi|261407968|ref|YP_003244209.1| flagellar biosynthetic protein FliP [Paenibacillus sp. Y412MC10] gi|329929296|ref|ZP_08283049.1| flagellar biosynthetic protein FliP [Paenibacillus sp. HGF5] gi|261284431|gb|ACX66402.1| flagellar biosynthetic protein FliP [Paenibacillus sp. Y412MC10] gi|328936665|gb|EGG33108.1| flagellar biosynthetic protein FliP [Paenibacillus sp. HGF5] Length = 250 Score = 204 bits (520), Expect = 8e-51, Method: Composition-based stats. Identities = 94/242 (38%), Positives = 146/242 (60%), Gaps = 5/242 (2%) Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSI-APILLIMVTCFP 63 F L+ FA + + I + + + + AP +L+++T F Sbjct: 11 IFIMFGLLFSHTAFADPIPNIDIQIGNEGDAPGTSSLSLILLITILSIAPAILVLMTSFT 70 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 R +IV +RT +G PPN V+I LALF+T +VM+PTL E+ +QP + +IT+ Sbjct: 71 RIVIVLGFVRTSLGTQQTPPNQVLIGLALFLTLFVMAPTLSSMNEVALQPYLKGEITQAE 130 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 A+ + +P FM +TREKDL LFM+ + + I +L+P+F ISEL+ Sbjct: 131 ALDKAQDPMKKFMFAHTREKDLLLFMNYTGAEKPE----SYEDIPLTVLVPAFAISELKT 186 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 F++GF+I +PFL+ID++VA+++MAMGMMMLPP ISLPFK++ FVL+DGW L+V++++ Sbjct: 187 GFQMGFMIFIPFLVIDIVVASVLMAMGMMMLPPVMISLPFKILLFVLVDGWYLVVKSMLM 246 Query: 244 SF 245 SF Sbjct: 247 SF 248 >gi|188592196|ref|YP_001796794.1| flagellar biosynthesis protein flip [Cupriavidus taiwanensis LMG 19424] gi|170938570|emb|CAP63557.1| fliP: flagellar biosynthesis protein. fliP/mopC/spaP family [Cupriavidus taiwanensis LMG 19424] Length = 274 Score = 204 bits (520), Expect = 8e-51, Method: Composition-based stats. Identities = 96/217 (44%), Positives = 144/217 (66%), Gaps = 4/217 (1%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P I + V+T + T LS P ++M+T F R IIV +LR +G + PPN V++ Sbjct: 61 PGGGQIWSLPVQTLVLLTSLSFLPAAMLMMTGFTRVIIVLGLLRNALGTATSPPNQVLVG 120 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 L+LF+TF+VM+P DR +PL N+++ A + AEP FM TREKDL++F Sbjct: 121 LSLFLTFFVMAPVFDRVYNDAYKPLSENKLSLEAAAAKAAEPLKAFMLRQTREKDLAMFA 180 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 MA + ++ + + IL+P+F+ SEL+ +F+IGF I +PFLIID++VA+++MAM Sbjct: 181 QMAKAP----EMQGPEEVPLSILVPAFVTSELKTAFQIGFTIFIPFLIIDLVVASVLMAM 236 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF+ Sbjct: 237 GMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSFM 273 >gi|113969635|ref|YP_733428.1| flagellar biosynthesis protein FliP [Shewanella sp. MR-4] gi|113884319|gb|ABI38371.1| flagellar biosynthetic protein FliP [Shewanella sp. MR-4] Length = 248 Score = 204 bits (520), Expect = 8e-51, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 145/247 (58%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIM 58 ++ + L + A L V A + + V + + T LS P ++IM Sbjct: 5 ILTLIGVSTLLFAASVGAADGVLPAVTVKTAADGSTEYSVTMQILLLMTSLSFIPAMVIM 64 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R I+V SILR +G+ P N V+I ++LFMTF++M+P D+ + G++P ++ Q Sbjct: 65 LTSFTRIIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDKIYDQGVKPYIDEQ 124 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 +T A + EP FM R DL F+D++ +I + +L+P+F+ Sbjct: 125 LTLQQAFDKGKEPLRAFMLGQVRTTDLKTFIDISG----YQNINSPEEAPMSVLVPAFIT 180 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK++ FVL+DGW L++ Sbjct: 181 SELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWGLVM 240 Query: 239 ENLVKSF 245 L SF Sbjct: 241 GTLANSF 247 >gi|114777577|ref|ZP_01452558.1| flagellar biosynthetic protein fliP [Mariprofundus ferrooxydans PV-1] gi|114552048|gb|EAU54565.1| flagellar biosynthetic protein fliP [Mariprofundus ferrooxydans PV-1] Length = 249 Score = 204 bits (520), Expect = 8e-51, Method: Composition-based stats. Identities = 97/234 (41%), Positives = 145/234 (61%), Gaps = 6/234 (2%) Query: 14 PELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71 P+LV A +++ W ++ + TIL++AP +L+M+T F R +IVF+ Sbjct: 18 PQLVQAADIPTLSLSLGNGDDPDAWFTGLKILAMLTILTLAPSILVMMTSFTRILIVFAF 77 Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131 LR +G PPN ++I L+LF+T ++M P + + P +N +I ++ A +R P Sbjct: 78 LRQALGTQQAPPNQILIGLSLFLTLFIMMPVWQKIDTTALTPYLNEEINQSVAFERGIAP 137 Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191 FM TRE DL LF++ A K + + +LIPSF+ISELR +FEIGFLI Sbjct: 138 LRDFMLKQTREDDLLLFLNAAKLKK----PAKAEDMPMHVLIPSFVISELRTAFEIGFLI 193 Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PF+++D+IVA+++M+MGMMMLPP ISLP K+I FVL+DGW L+ NL+ SF Sbjct: 194 YIPFIVLDLIVASVLMSMGMMMLPPVMISLPLKIILFVLVDGWHLITANLIASF 247 >gi|46204265|ref|ZP_00050254.2| COG1338: Flagellar biosynthesis pathway, component FliP [Magnetospirillum magnetotacticum MS-1] Length = 249 Score = 204 bits (520), Expect = 8e-51, Method: Composition-based stats. Identities = 107/244 (43%), Positives = 158/244 (64%), Gaps = 8/244 (3%) Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61 + + A+S D+ + +S ++ + T+LS+AP L++VT Sbjct: 12 LLIGALCASFLGSTPASAQSLTIDLSS----GGVSERALQLVALVTVLSLAPSALVVVTS 67 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F R ++VFSILR+ +G S PPN V+++LALF+T +VM+P ++ GI PL+ +I + Sbjct: 68 FTRLVVVFSILRSALGTQSAPPNAVLVALALFLTAFVMAPVGRQAYTAGIAPLLAGEIQQ 127 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 A +R PF FM N REKDL LF+ MA + + I ++ P+FMISEL Sbjct: 128 GQAFERTLAPFRAFMLKNVREKDLDLFLKMAKTPPP----ASPEEIGLEVVTPAFMISEL 183 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 R+FEIGFL+ +PF+IID+ V++++MA+GMMM+PPTS+SLPFK+IFFVL+DGWSLLV +L Sbjct: 184 SRAFEIGFLLFIPFMIIDLAVSSVLMALGMMMMPPTSVSLPFKLIFFVLVDGWSLLVGSL 243 Query: 242 VKSF 245 V+SF Sbjct: 244 VQSF 247 >gi|153834137|ref|ZP_01986804.1| flagellar biosynthesis protein [Vibrio harveyi HY01] gi|148869507|gb|EDL68505.1| flagellar biosynthesis protein [Vibrio harveyi HY01] Length = 280 Score = 204 bits (519), Expect = 8e-51, Method: Composition-based stats. Identities = 91/209 (43%), Positives = 136/209 (65%), Gaps = 5/209 (2%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + ++ + T+L P ++I++T F R ++V SILR MG+ P N VII +ALF+TF Sbjct: 75 SVTLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTF 134 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 +VMSP L+ + IQP +N Q+T A P FM TR KDL F++M+ Sbjct: 135 FVMSPVLNEINDNAIQPYLNEQVTARQAFDAAQVPMKAFMLKQTRIKDLETFVNMSG--- 191 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGMMML P Sbjct: 192 --EQVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGMMMLSP 249 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +SLPFK++ FVL+DGW+L++ L SF Sbjct: 250 MIVSLPFKLMLFVLVDGWNLILSTLAGSF 278 >gi|309779459|ref|ZP_07674220.1| flagellar biosynthetic protein FliP [Ralstonia sp. 5_7_47FAA] gi|308921700|gb|EFP67336.1| flagellar biosynthetic protein FliP [Ralstonia sp. 5_7_47FAA] Length = 249 Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats. Identities = 99/246 (40%), Positives = 147/246 (59%), Gaps = 5/246 (2%) Query: 2 IRYCFFALFLVTPELVFAKSSLH-DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 +R L VFA++ ++ A + V+T T L P +++M++ Sbjct: 7 LRCLIALALLGAAPAVFAQAQPGLPLLTGTAGGQSYSLPVQTLVFLTSLGFLPAIILMMS 66 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R IIV S+LR +G + PPN V+I LALF+TF+VMSP LD+ PL +++IT Sbjct: 67 SFTRIIIVLSLLRHALGTQTSPPNQVLIGLALFLTFFVMSPVLDKVYTDAYVPLRDSKIT 126 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A+ A P FM TRE DL+LF+ M + I + R LIP+F+ SE Sbjct: 127 VEQAMDTAATPLRQFMLKQTREPDLALFVKMGNMP----AIASPEQTPMRALIPAFVTSE 182 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +F+IGF I +PFL+ID++VA ++M+MGMMM+ P+ SLPFK++ FVL+DGW LL+ + Sbjct: 183 LKSAFQIGFAIFIPFLVIDIVVAAVLMSMGMMMVTPSIFSLPFKIMLFVLVDGWHLLLGS 242 Query: 241 LVKSFI 246 L +SF+ Sbjct: 243 LAQSFV 248 >gi|154686052|ref|YP_001421213.1| flagellar biosynthesis protein FliP [Bacillus amyloliquefaciens FZB42] gi|154351903|gb|ABS73982.1| FliP [Bacillus amyloliquefaciens FZB42] Length = 221 Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats. Identities = 92/209 (44%), Positives = 144/209 (68%), Gaps = 4/209 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + V+ + T+ S+AP +LI++TCF R +IV S +RT + ++PPN V+I LALF+TF Sbjct: 17 SSTVKLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATQNMPPNQVLIGLALFLTF 76 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 ++M+PT + + PLM+N+I+ A + +P +M +TR+KDL+LFM+ A Sbjct: 77 FIMAPTFSEINKEALTPLMDNKISLDEAYTKAEKPIKEYMSKHTRQKDLALFMNYAKMKK 136 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 I ++P++ ISEL+ +F++GF+I +PFLIIDM+VA+++M+MGMMMLPP Sbjct: 137 PE----SIQDIPLTTMVPAYAISELKTAFQMGFMIFIPFLIIDMVVASVLMSMGMMMLPP 192 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLPFK++ FVL+DGW L+V++L+ SF Sbjct: 193 VMISLPFKILLFVLVDGWYLIVKSLLDSF 221 >gi|261252332|ref|ZP_05944905.1| flagellar biosynthesis protein FliP [Vibrio orientalis CIP 102891] gi|260935723|gb|EEX91712.1| flagellar biosynthesis protein FliP [Vibrio orientalis CIP 102891] Length = 275 Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats. Identities = 89/219 (40%), Positives = 139/219 (63%), Gaps = 5/219 (2%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 P + ++ + T+L P ++I++T F R ++V SILR MG+ P N V Sbjct: 60 TTNPDGSEDYSVNLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 119 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 II +A+F+TF++MSP L++ + IQP +N QI+ A P FM TR KDL Sbjct: 120 IIGIAIFLTFFIMSPVLNKINDDAIQPYINEQISARQAFDLAQIPMKDFMLKQTRVKDLE 179 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 F++++ S+ T + + +LIP+F+ SEL+ +F+IGF++ LPFL+ID++VA+++ Sbjct: 180 TFVNISGST-----ATAPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLVIDLVVASVL 234 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 235 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 273 >gi|299531251|ref|ZP_07044661.1| flagellar biosynthesis protein FliP [Comamonas testosteroni S44] gi|298720658|gb|EFI61605.1| flagellar biosynthesis protein FliP [Comamonas testosteroni S44] Length = 249 Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats. Identities = 94/247 (38%), Positives = 150/247 (60%), Gaps = 7/247 (2%) Query: 2 IRYCFFALFLVTPELVFAK---SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIM 58 + A+ L P + A+ +SL ++ A + + ++T FT LS P +L++ Sbjct: 5 VSRAAAAVLLAMPLMAAAQGAPASLPLLVGQGAGGTSYSVPIQTLLFFTALSFLPAILLL 64 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R +IV S+LR +G S PPN V+I L+LF+T +VM PTLD+ + P N Sbjct: 65 MTGFTRIVIVLSLLRQALGTQSAPPNQVVIGLSLFLTMFVMGPTLDKVYQDAYLPYTQNS 124 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ A+++ P FM TR+ D +LF +A T + R+L+P+F+ Sbjct: 125 ISFEQAMEKAEAPMRGFMLKQTRQSDFALFKRLAKLDANVT----AETAPLRVLVPAFVT 180 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF+I +PFL+IDM+V++I+M++GMMML P ++LPFK++ FVL DGW+L++ Sbjct: 181 SELKTAFQIGFMIFIPFLVIDMVVSSILMSLGMMMLSPVLVALPFKLMLFVLADGWNLII 240 Query: 239 ENLVKSF 245 +L SF Sbjct: 241 GSLAASF 247 >gi|209545574|ref|YP_002277803.1| flagellar biosynthesis protein FliP [Gluconacetobacter diazotrophicus PAl 5] gi|209533251|gb|ACI53188.1| flagellar biosynthetic protein FliP [Gluconacetobacter diazotrophicus PAl 5] Length = 266 Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats. Identities = 103/238 (43%), Positives = 155/238 (65%), Gaps = 4/238 (1%) Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67 A+ P L A+S D+ D ++ +V+ + TILS+AP LL+MVT F R I+ Sbjct: 31 AVLAGMPTLAHAQSLSLDLGKGMGDAGTTSRLVQLTALITILSLAPSLLVMVTAFTRIIV 90 Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127 V S+LR +G PPN V+I LALF+TF+VM P +S + GI P+M+ +++E + Sbjct: 91 VLSLLRGAIGAQGAPPNTVLIGLALFLTFFVMQPVFQQSWDHGIVPMMDGRVSEMEGLTA 150 Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187 AEPF FM N R D++ F+ +A+ T +R+++P+FMI EL R FE+ Sbjct: 151 AAEPFRTFMLANARPADITTFLHLANVPPPATPAETP----WRVIMPAFMIGELSRGFEM 206 Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GFL+ LPFL+ID++ ++++M++GMMMLPP +ISLPFK+IFFV++DGW ++ LV+SF Sbjct: 207 GFLLYLPFLVIDIVTSSVLMSLGMMMLPPATISLPFKLIFFVMVDGWQMVAGGLVRSF 264 >gi|298736381|ref|YP_003728907.1| flagellar biosynthesis protein FliP [Helicobacter pylori B8] gi|298355571|emb|CBI66443.1| flagellar biosynthesis protein (FliP) [Helicobacter pylori B8] Length = 260 Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats. Identities = 104/227 (45%), Positives = 158/227 (69%), Gaps = 4/227 (1%) Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 A S++ +N P+D + + T+L +AP L++++T F R I+VFS LRT +G Sbjct: 35 ALPSVNLSLNAPSDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGT 94 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ A PF FM Sbjct: 95 QQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLK 154 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 NTREKDL+LF + + + T D + +LIP+FMISEL+ +F+IGFL+ LPFL+I Sbjct: 155 NTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVI 210 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 DM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENLV SF Sbjct: 211 DMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 257 >gi|145298356|ref|YP_001141197.1| flagellar biosynthesis protein FliP [Aeromonas salmonicida subsp. salmonicida A449] gi|142851128|gb|ABO89449.1| Flagellar biosynthesis protein FliP [Aeromonas salmonicida subsp. salmonicida A449] Length = 249 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 149/246 (60%), Gaps = 7/246 (2%) Query: 2 IRYCFFALFLVTPELVFAKSSLHDVM--NIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 + + ++ L A+ + V + + ++ + T LS P ++IM+ Sbjct: 3 LLVGLLSTLVLFSPLALAQDGMSAVTIKTLADGSQEYSLTLQVLALMTALSFLPAVVIMM 62 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R IIV ILR +G+ P N V+I +ALFM+F++MSP LDR + +QP + I Sbjct: 63 TSFTRIIIVLGILRQAIGLQQSPSNQVLIGIALFMSFFIMSPVLDRINDEALQPYLAETI 122 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 A+++ P FM + TR KDL+ FM++A + K + R+LIP+F+ S Sbjct: 123 QAREALEKAELPIHQFMLSQTRIKDLNTFMEIADV-----QVDKPAEVPLRVLIPAFVTS 177 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+ +F+IGF++ LPFL+ID++VA+I+MAMGMMML P +SLPFK++ FV++DGW+L++ Sbjct: 178 ELKTAFQIGFMLFLPFLVIDLVVASILMAMGMMMLSPMLVSLPFKLMLFVMVDGWNLILG 237 Query: 240 NLVKSF 245 +L SF Sbjct: 238 SLANSF 243 >gi|260893864|ref|YP_003239961.1| flagellar biosynthetic protein FliP [Ammonifex degensii KC4] gi|260866005|gb|ACX53111.1| flagellar biosynthetic protein FliP [Ammonifex degensii KC4] Length = 223 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 95/207 (45%), Positives = 143/207 (69%), Gaps = 4/207 (1%) Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98 V+ + T+LS+ P +LI++T F R +IV S+LR+ +G PPN V++ LALF+T ++ Sbjct: 20 AVKILLLLTVLSLVPAILILMTSFTRIVIVLSLLRSALGTHQAPPNQVLVGLALFLTVFI 79 Query: 99 MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 M+P +R + I+P + NQIT A R P FM REKDL+LF+++AH Sbjct: 80 MAPVYERINQEAIRPYLANQITRQEAQVRGLRPLKEFMLRQVREKDLALFVNLAHLPQP- 138 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 + + R++IP+F+ISEL+ +F +GFL+ LPFL+IDM+VA+++M+MGM MLPP Sbjct: 139 ---VNKEELPLRVIIPAFLISELKTAFAMGFLLYLPFLVIDMVVASVLMSMGMFMLPPVM 195 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLPFK++ FVL+DGW L+V++LV+SF Sbjct: 196 ISLPFKLLLFVLVDGWYLVVKSLVESF 222 >gi|157376188|ref|YP_001474788.1| flagellar biosynthesis protein FliP [Shewanella sediminis HAW-EB3] gi|157318562|gb|ABV37660.1| Triacylglycerol lipase [Shewanella sediminis HAW-EB3] Length = 248 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 92/244 (37%), Positives = 144/244 (59%), Gaps = 6/244 (2%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTC 61 + F+L L++PE L V + + V + + T LS P ++IM+T Sbjct: 7 FIAFSLLLISPEAFSQGGVLPAVTVTTGPQGETQYSVTMQILLLMTSLSFLPAMVIMLTS 66 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F R I+V SILR +G+ P N V+I ++LF+TF++MSP D+ + ++P M + Sbjct: 67 FTRIIVVLSILRQAIGLQQAPSNQVLIGMSLFLTFFIMSPVFDKVYDDAVKPYMEESMGI 126 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 A + EP FM TR DL F+ ++ +I + ++IPSF+ SEL Sbjct: 127 EEAFNKGKEPIKTFMLAQTRVTDLDTFIQISG----YQNINSPEEAPMSVIIPSFITSEL 182 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 + +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK++ FVL+DGWSL++ L Sbjct: 183 KTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVMGTL 242 Query: 242 VKSF 245 SF Sbjct: 243 ANSF 246 >gi|56964019|ref|YP_175750.1| flagellar biosynthesis protein FliP [Bacillus clausii KSM-K16] gi|56910262|dbj|BAD64789.1| flagellar biosynthetic protein FliP [Bacillus clausii KSM-K16] Length = 227 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 95/215 (44%), Positives = 137/215 (63%), Gaps = 4/215 (1%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 + V+ + T+L+IAP +LIM+TCF R IIV + +R G+ S PPN V+I L Sbjct: 16 TNGETMATTVQIALLLTVLTIAPGILIMMTCFTRIIIVLAFVRQGLATQSTPPNQVLIGL 75 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 ALF+T ++M+P + E PL + + + A + P FM +TREKDL+LFM Sbjct: 76 ALFITAFIMAPVIQEVYETAYVPLADGEYSSEEAFEAAVVPIKEFMSAHTREKDLALFMG 135 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 D + L+P+F ISEL+ +F+IGFLI +PFL+IDMIVA+++M+MG Sbjct: 136 YGGYDRP----ASIDDVPLTALVPAFAISELKTAFQIGFLIFIPFLVIDMIVASVLMSMG 191 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMMLPP I+LPFKV+ FVL+DGW L+V++L+ S+ Sbjct: 192 MMMLPPVMIALPFKVLLFVLVDGWYLVVQSLLISY 226 >gi|89072284|ref|ZP_01158863.1| putative flagellar assembly protein [Photobacterium sp. SKA34] gi|89051816|gb|EAR57268.1| putative flagellar assembly protein [Photobacterium sp. SKA34] Length = 263 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 86/233 (36%), Positives = 129/233 (55%), Gaps = 6/233 (2%) Query: 15 ELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72 +S + + + D + V + + T LS P L+M T F R IIV SIL Sbjct: 34 SSAAEANSGLNFLTVTDDQGEQEYSVKLQILLLMTALSFIPAFLLMATSFTRIIIVLSIL 93 Query: 73 RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132 R +G+ PPN +++ +AL +T +M P + P N IT A +P Sbjct: 94 RQALGLQQSPPNRILVGIALSLTILIMRPVWTDVYDNAFVPYDNGDITLLQAFDTAEKPV 153 Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192 FM T + L M +A+ ++I + I++P+F+ISEL+ +F+IGF++ Sbjct: 154 RDFMLKQTHQSALEQMMRIANEPLD----QDVENISFAIVLPAFVISELKTAFQIGFMLF 209 Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PFLIID++VA+++MAMGMMML P ISLPFK+I FVL DGW++ V +L SF Sbjct: 210 IPFLIIDLVVASVLMAMGMMMLSPLIISLPFKLIVFVLADGWTMTVGSLSASF 262 >gi|23099026|ref|NP_692492.1| flagellar biosynthesis protein FliP [Oceanobacillus iheyensis HTE831] gi|22777254|dbj|BAC13527.1| flagellar protein required for flagellar formation [Oceanobacillus iheyensis HTE831] Length = 221 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 97/217 (44%), Positives = 142/217 (65%), Gaps = 4/217 (1%) Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88 +D + + V+ + TI S+AP +LI++T F R IIV S +RT + +PPN V+I Sbjct: 9 SSSDPTNISTSVKLLLLLTIFSLAPGILILMTSFTRIIIVLSFVRTSLATQQMPPNQVLI 68 Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148 +ALFM+F++M+PT E G+ PL N +IT A + + P FM +TR+KDL LF Sbjct: 69 GIALFMSFFIMAPTFTEVYEEGLGPLFNEEITLDEAYENASIPLKEFMAQHTRQKDLELF 128 Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208 ++ + T + I L+P+F ISEL+ +F++GFLI +PFLIIDM VA+I+M+ Sbjct: 129 LNYTQADPPET----IEDIPLTTLVPAFAISELKTAFQMGFLIFIPFLIIDMAVASILMS 184 Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MGMMMLPP ISLPFK++ FVL+DGW L+ ++L+ F Sbjct: 185 MGMMMLPPVMISLPFKILLFVLVDGWYLITQSLLGGF 221 >gi|118474799|ref|YP_891929.1| flagellar biosynthesis protein FliP [Campylobacter fetus subsp. fetus 82-40] gi|118414025|gb|ABK82445.1| flagellar biosynthetic protein FliP [Campylobacter fetus subsp. fetus 82-40] Length = 244 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 105/242 (43%), Positives = 149/242 (61%), Gaps = 4/242 (1%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63 FF +++ ++ P + + T+L++AP L+ ++T F Sbjct: 6 LIFFGFVTGFAAETVTIPTINLNLSAPDTPQQLVTSLNVLIVLTLLALAPSLIFVMTSFL 65 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 R IIVFS LR MG +PP V+ISLAL +TF++M P +S GI+P + +I Sbjct: 66 RLIIVFSFLRQAMGTQQMPPTNVLISLALILTFFIMEPVAKQSYNEGIKPYLEEKIGYQD 125 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 A A+PF FM NTREKDL+LF + + NT D I + I P+F+ISEL+ Sbjct: 126 AFALGAKPFKEFMVRNTREKDLALFYRIRALPNPNT----VDDIPFTIAAPAFIISELKT 181 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 +FEIGFL+ LPFL+IDM+V++++M+MGMMMLPP ISLPFK++ FVL+DGW+LL+ NLV Sbjct: 182 AFEIGFLLYLPFLVIDMVVSSVLMSMGMMMLPPVMISLPFKLLIFVLVDGWNLLIGNLVA 241 Query: 244 SF 245 SF Sbjct: 242 SF 243 >gi|104782808|ref|YP_609306.1| flagellar biosynthesis protein FliP [Pseudomonas entomophila L48] gi|95111795|emb|CAK16519.1| flagellar biosynthetic protein FliP [Pseudomonas entomophila L48] Length = 251 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 96/220 (43%), Positives = 139/220 (63%), Gaps = 4/220 (1%) Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85 + N + ++ I T LS P +I++T F R IIVFSILR +G+ P N Sbjct: 33 LSNGADGQQEYSVSLQILLIMTALSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQ 92 Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145 V+ +ALF+T ++M+P +R + IQP + Q+T AI + P FM TR+ DL Sbjct: 93 VLTGMALFLTMFIMAPVFERVNKDAIQPYLAEQMTAQQAIDKAQGPLKDFMLAQTRQSDL 152 Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205 LFM ++ + TDI D + IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA++ Sbjct: 153 DLFMRLS----KRTDIAGPDQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASV 208 Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MAMGMMML P ISLPFK++ FVL+DGW+L++ L SF Sbjct: 209 LMAMGMMMLSPLIISLPFKIMLFVLVDGWALIMGTLAGSF 248 >gi|323700135|ref|ZP_08112047.1| flagellar biosynthetic protein FliP [Desulfovibrio sp. ND132] gi|323460067|gb|EGB15932.1| flagellar biosynthetic protein FliP [Desulfovibrio desulfuricans ND132] Length = 252 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 97/215 (45%), Positives = 135/215 (62%), Gaps = 4/215 (1%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 AD + ++ + TILSIAP +L+ +T F R IIVF +R MG +PPN ++ +L Sbjct: 41 ADPQEVSTLLEILFLLTILSIAPAILLTMTSFTRIIIVFHFIRQAMGTQQMPPNQILAAL 100 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 A+FMT +M P E +QP MN I T A+ R P FM +TREKDLS+F Sbjct: 101 AIFMTMVIMYPVGKTINETALQPYMNETINFTEALTRAQVPIRQFMFKHTREKDLSIFYS 160 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 + + + +L+ ++ ISEL+ F IGFLI +PFLI+DM+VA+I++AMG Sbjct: 161 ITKEPRPE----NKEEVPTIMLVAAYTISELKTGFTIGFLIYIPFLILDMVVASILLAMG 216 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMMLPP ISLPFK++ F+LIDGW+LLV +LV +F Sbjct: 217 MMMLPPVMISLPFKILLFILIDGWNLLVGSLVNTF 251 >gi|302878289|ref|YP_003846853.1| flagellar biosynthetic protein FliP [Gallionella capsiferriformans ES-2] gi|302581078|gb|ADL55089.1| flagellar biosynthetic protein FliP [Gallionella capsiferriformans ES-2] Length = 249 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 93/230 (40%), Positives = 150/230 (65%), Gaps = 6/230 (2%) Query: 18 FAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTG 75 A ++ + + A ++ + +T I T LS P +L+M+T F R IIV S+LR+ Sbjct: 22 AADLAVPAITSKAAAGGGQSYSLSLQTLLILTSLSFLPAMLLMMTSFTRIIIVLSMLRSA 81 Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVF 135 +G + PPN V+I L+LF+TF++MSP D+ P N+I A+++ P F Sbjct: 82 LGTQASPPNQVLIGLSLFLTFFIMSPVFDKIYTDAYLPYSENRIELQEAVEKGVIPLKTF 141 Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195 M TR+ DL+LF+ +++S ++ + + R+L+P+++ SEL+ +F+IGF++ +PF Sbjct: 142 MLRQTRQADLALFVKISNS----DELQSAEEVPMRLLVPAYVTSELKTAFQIGFVVFIPF 197 Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LIIDM+VA+I+M+MGMMML P+ ISLPFK++ FVL DGW+LL+ +L +SF Sbjct: 198 LIIDMVVASILMSMGMMMLSPSIISLPFKIMLFVLADGWNLLIGSLAQSF 247 >gi|217033150|ref|ZP_03438609.1| hypothetical protein HPB128_194g3 [Helicobacter pylori B128] gi|216945122|gb|EEC23821.1| hypothetical protein HPB128_194g3 [Helicobacter pylori B128] Length = 231 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 104/227 (45%), Positives = 158/227 (69%), Gaps = 4/227 (1%) Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 A S++ +N P+D + + T+L +AP L++++T F R I+VFS LRT +G Sbjct: 6 ALPSVNLSLNAPSDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGT 65 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ A PF FM Sbjct: 66 QQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLK 125 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 NTREKDL+LF + + + T D + +LIP+FMISEL+ +F+IGFL+ LPFL+I Sbjct: 126 NTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVI 181 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 DM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENLV SF Sbjct: 182 DMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 228 >gi|188527470|ref|YP_001910157.1| flagellar biosynthesis protein FliP [Helicobacter pylori Shi470] gi|188143710|gb|ACD48127.1| flagellar biosynthesis protein FliP [Helicobacter pylori Shi470] Length = 248 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 104/227 (45%), Positives = 157/227 (69%), Gaps = 4/227 (1%) Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 A S++ +N P D + + T+L +AP L++++T F R I+VFS LRT +G Sbjct: 23 ALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGT 82 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ A PF FM Sbjct: 83 QQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLK 142 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 NTREKDL+LF + + + T D + +LIP+FMISEL+ +F+IGFL+ LPFL+I Sbjct: 143 NTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVI 198 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 DM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENLV SF Sbjct: 199 DMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 245 >gi|294508622|ref|YP_003572681.1| flagellar biosynthetic protein FliP [Salinibacter ruber M8] gi|294344951|emb|CBH25729.1| flagellar biosynthetic protein FliP [Salinibacter ruber M8] Length = 284 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 90/206 (43%), Positives = 142/206 (68%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + T+L++AP ++I++T F R ++VFSILR +G+ PP V+I L+LF++ ++M Sbjct: 80 IQLLLLLTVLTLAPAIIILMTSFTRLVVVFSILRRALGLQRSPPRQVVIGLSLFLSLFIM 139 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P L+ + ++P ++N+IT+ A R + P FM +TR+KDL LFMDM Sbjct: 140 QPVLETVHQDALRPYLDNEITQQEAFDRASTPMKRFMLTHTRDKDLMLFMDMGEI----E 195 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 D +++P+F+ISELR +F+IGF+I LPFLI+D++VA+I+M+MGMMMLPP I Sbjct: 196 SFEGPDEAPLYVVVPAFVISELRIAFQIGFMIFLPFLIVDLVVASILMSMGMMMLPPVMI 255 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLP K++ FVL DGW L+VE+L++ + Sbjct: 256 SLPIKLLLFVLTDGWYLIVESLMQGY 281 >gi|308173598|ref|YP_003920303.1| flagellar export protein [Bacillus amyloliquefaciens DSM 7] gi|307606462|emb|CBI42833.1| component of the flagellar export machinery [Bacillus amyloliquefaciens DSM 7] gi|328553470|gb|AEB23962.1| flagellar biosynthesis protein FliP [Bacillus amyloliquefaciens TA208] gi|328911739|gb|AEB63335.1| component of the flagellar export machinery [Bacillus amyloliquefaciens LL3] Length = 221 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 92/209 (44%), Positives = 144/209 (68%), Gaps = 4/209 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + V+ + T+ S+AP +LI++TCF R +IV S +RT + ++PPN V+I LALF+TF Sbjct: 17 SSTVKLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATQNMPPNQVLIGLALFLTF 76 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 ++M+PT + + PLM+N+I+ A + +P +M +TR+KDL+LFM+ A Sbjct: 77 FIMAPTFSEINKDALTPLMDNKISLDEAYTKAEKPIKEYMSKHTRQKDLALFMNYAKMKK 136 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 I ++P++ ISEL+ +F++GF+I +PFLIIDM+VA+++M+MGMMMLPP Sbjct: 137 PE----SIQDIPLTTMVPAYAISELKTAFQMGFMIFIPFLIIDMVVASVLMSMGMMMLPP 192 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLPFK++ FVL+DGW L+V++L+ SF Sbjct: 193 VMISLPFKILLFVLVDGWYLIVKSLLDSF 221 >gi|90422616|ref|YP_530986.1| flagellar biosynthesis protein FliP [Rhodopseudomonas palustris BisB18] gi|90104630|gb|ABD86667.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris BisB18] Length = 248 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 120/227 (52%), Positives = 164/227 (72%), Gaps = 2/227 (0%) Query: 20 KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79 + + P S S I++ + T+LS+AP LLIMVT F RF++ S LRTG+G+ Sbjct: 24 QMPDLSTLIPPGGGSASGRIIQMVALLTVLSLAPGLLIMVTSFTRFVVALSFLRTGLGLQ 83 Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139 + P N+V+ISLALF+TFYVM+PT DR+ G+QPLM N+ITE A RV EPF FM + Sbjct: 84 TTPANIVMISLALFLTFYVMAPTFDRAWRDGLQPLMQNEITEKEAYSRVTEPFREFMLAH 143 Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199 R+KDL F +A S R + + ++ R++IP+FM+SELRR+FEIGFLI++PFL+ID Sbjct: 144 VRDKDLQTFESLAAESLRIRP--EGEKVDLRVIIPAFMVSELRRAFEIGFLIVMPFLVID 201 Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 M+VAT+ M+MGMMM+PPT +LPFKV+FFVLIDGW+LL LV+S++ Sbjct: 202 MVVATLTMSMGMMMMPPTVFALPFKVLFFVLIDGWNLLAVGLVRSYL 248 >gi|260776473|ref|ZP_05885368.1| flagellar biosynthesis protein FliP [Vibrio coralliilyticus ATCC BAA-450] gi|260607696|gb|EEX33961.1| flagellar biosynthesis protein FliP [Vibrio coralliilyticus ATCC BAA-450] Length = 244 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 92/219 (42%), Positives = 138/219 (63%), Gaps = 5/219 (2%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 P + ++ + T+L P ++I++T F R ++V SILR MG+ P N V Sbjct: 29 TTNPDGSEDYSVNLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 88 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 II +A+F+TF++MSP L+ + IQP +N QIT A P FM TR KDL Sbjct: 89 IIGIAIFLTFFIMSPVLNEINDKAIQPYINEQITARQAFDVAQAPMKDFMLKQTRVKDLE 148 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 F++++ S D T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++ Sbjct: 149 TFVNISGS-----DATAPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 203 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 204 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 242 >gi|323496545|ref|ZP_08101599.1| flagellar biosynthesis protein FliP [Vibrio sinaloensis DSM 21326] gi|323318389|gb|EGA71346.1| flagellar biosynthesis protein FliP [Vibrio sinaloensis DSM 21326] Length = 291 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 88/219 (40%), Positives = 139/219 (63%), Gaps = 5/219 (2%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 P + ++ + T+L P ++I++T F R ++V SILR MG+ P N V Sbjct: 76 TTNPDGSEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 135 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 II +A+F+TF++MSP L++ E +QP +N QI+ A P FM TR KDL Sbjct: 136 IIGIAIFLTFFIMSPVLNKINEAAVQPYINEQISAREAFDLAQAPMKDFMLKQTRVKDLE 195 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 F++++ ++ + + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++ Sbjct: 196 TFVNISGAT-----VNNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 250 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 251 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 289 >gi|254418891|ref|ZP_05032615.1| flagellar biosynthetic protein FliP [Brevundimonas sp. BAL3] gi|196185068|gb|EDX80044.1| flagellar biosynthetic protein FliP [Brevundimonas sp. BAL3] Length = 266 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 94/219 (42%), Positives = 148/219 (67%), Gaps = 4/219 (1%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 +++ + ++ +V+ G+ T+LS+AP ++IM T F R ++V S+LRT +GM PPN V Sbjct: 45 IDLGSGAGLTQRVVQLVGLMTVLSLAPSIVIMTTSFVRIVVVLSLLRTALGMQQSPPNAV 104 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 ++SLALF++ VM+PT + + GI+PL++ Q+ A +EP FM DL+ Sbjct: 105 LVSLALFLSAIVMAPTWQDAYDSGIRPLLDQQMELPQAFDAASEPVKTFMLAQVDRGDLA 164 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 LF ++ + R++ P+FMISEL+++FEIGFL+ +PFL+ID++VA+++ Sbjct: 165 LFTRLSRVEAP----ANLQELPLRVVTPAFMISELKKAFEIGFLLFVPFLVIDLVVASVL 220 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+MGMMMLPP +SLPFK+IFFVL+DGW L+ +LV+SF Sbjct: 221 MSMGMMMLPPVVVSLPFKLIFFVLVDGWRLVAGSLVESF 259 >gi|237750901|ref|ZP_04581381.1| flagellar biosynthesis protein FliP [Helicobacter bilis ATCC 43879] gi|229373346|gb|EEO23737.1| flagellar biosynthesis protein FliP [Helicobacter bilis ATCC 43879] Length = 275 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 96/232 (41%), Positives = 145/232 (62%), Gaps = 8/232 (3%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 S+ +N P+ + + + T+L +AP L++M+T F R +IV LRT +G Sbjct: 41 SVDLSINPPSTPTQLVTTLNIVVLLTLLILAPSLVLMMTSFTRILIVLGFLRTALGTQQS 100 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PP V++SLA+ +TF++M P + + +GI+P M +I A + PF FM NTR Sbjct: 101 PPTQVLVSLAMILTFFIMEPVIKDAYNVGIKPYMEEKIGYEEAFEETMRPFKKFMLMNTR 160 Query: 142 EKDLSLFMDMAHSSHRNTDITKN--------DHIEYRILIPSFMISELRRSFEIGFLIIL 193 D++LF + + D D + I++PSFMISEL+ +F+IGFL+ L Sbjct: 161 HSDIALFYKIRNEEPPQMDNITTKEQFEALIDKVSLSIILPSFMISELKTAFQIGFLLYL 220 Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 PFL+IDM++A+++MAMGMMMLPP ISLPFK++ FVL+DG++LL+ NLV+SF Sbjct: 221 PFLVIDMVIASVLMAMGMMMLPPVMISLPFKILIFVLVDGFNLLIWNLVRSF 272 >gi|313901464|ref|ZP_07834920.1| flagellar biosynthetic protein FliP [Thermaerobacter subterraneus DSM 13965] gi|313468270|gb|EFR63728.1| flagellar biosynthetic protein FliP [Thermaerobacter subterraneus DSM 13965] Length = 227 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 84/194 (43%), Positives = 131/194 (67%), Gaps = 4/194 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP LL+M+T F R ++ S LR +G PPN V++ LALF+T +VM+P + + Sbjct: 34 APALLVMMTGFTRIVVALSFLRGALGTQQAPPNQVLVGLALFLTVFVMAPVWQQVYQDAW 93 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 P + +I + A+QR EP FM TRE+DL+LF++++ + D + + Sbjct: 94 IPYRDGRIGQVEALQRAQEPVREFMFRYTRERDLALFLELSGRG----PVASPDQVPTYV 149 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 LIP+F ISEL+ +F+IGF++ +PFL+IDM+VA+ +M+MGM+M+PP +SLPFK++ FVL+ Sbjct: 150 LIPAFAISELKTAFQIGFILYVPFLVIDMVVASTLMSMGMLMVPPMLVSLPFKILLFVLV 209 Query: 232 DGWSLLVENLVKSF 245 DGW+L+V +L+ SF Sbjct: 210 DGWNLVVRSLLASF 223 >gi|217033687|ref|ZP_03439114.1| hypothetical protein HP9810_5g29 [Helicobacter pylori 98-10] gi|216943876|gb|EEC23313.1| hypothetical protein HP9810_5g29 [Helicobacter pylori 98-10] Length = 231 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 103/224 (45%), Positives = 156/224 (69%), Gaps = 4/224 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 S++ +N P D + + T+L +AP L++++T F R I+VFS LRT +G Sbjct: 9 SVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQT 68 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ A PF FM NTR Sbjct: 69 PPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLKNTR 128 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 EKDL+LF + + + T D + +LIP+FMISEL+ +F+IGFL+ LPFL+IDM+ Sbjct: 129 EKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVIDMV 184 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENLV SF Sbjct: 185 ISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 228 >gi|212634377|ref|YP_002310902.1| flagellar biosynthesis protein FliP [Shewanella piezotolerans WP3] gi|212555861|gb|ACJ28315.1| Flagellar biosynthetic protein FliP [Shewanella piezotolerans WP3] Length = 249 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 146/247 (59%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIM 58 ++ + AL L++P ++ L V + + V + + T LS P +IM Sbjct: 5 IVLFGGLALSLISPTVLAETGILPAVTVSTGADGSTQYSVTMQILLLMTALSFIPAAVIM 64 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R I+V SILR +G+ P N ++I +++FMTF++MSP D+ E ++P + Sbjct: 65 LTSFTRIIVVLSILRQAIGLQQAPSNQILIGISMFMTFFIMSPVFDKIYEQAVKPYIEQG 124 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 + A P FM + TR DL F++++ +I + + ++IP+F+ Sbjct: 125 MPIQDAFNTGKGPLKDFMLSQTRLTDLDTFIEISG----YQNINEPEDAPMSVIIPAFIT 180 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK++ FVL+DGWSL++ Sbjct: 181 SELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVM 240 Query: 239 ENLVKSF 245 L SF Sbjct: 241 GTLANSF 247 >gi|158422252|ref|YP_001523544.1| flagellar biosynthetic FliP protein [Azorhizobium caulinodans ORS 571] gi|158329141|dbj|BAF86626.1| flagellar biosynthetic FliP protein [Azorhizobium caulinodans ORS 571] Length = 292 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 129/264 (48%), Positives = 171/264 (64%), Gaps = 30/264 (11%) Query: 12 VTPELVFAKSSLHDVMNIP--------ADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63 + L +A++ + IP ++S I++ + T+LSIAP LLIMVT F Sbjct: 28 FSAGLAYAQNRVQGDTQIPSLDSLLGDNGGAVSGRIIQMVMVLTVLSIAPGLLIMVTSFT 87 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 RF+I S LR+G+G+ S P NLV+ISL+LFMTFYVM PT D++ G++PL +ITE Sbjct: 88 RFVIALSFLRSGLGLSSTPANLVLISLSLFMTFYVMGPTFDKAWTEGVRPLTERKITEEE 147 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDM----------------------AHSSHRNTDI 161 A +++EPF FM + R KDL LF D+ A S +R+ + Sbjct: 148 AFTKISEPFREFMLSQVRPKDLRLFADIAAATGRPSKNDPETAAQNNSAPATSPNRDQNA 207 Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221 IE RILIP+FMISELRR FEIGFLIILPFLIIDMIVAT+VM+MGMMM+ P +++L Sbjct: 208 QPERQIELRILIPAFMISELRRGFEIGFLIILPFLIIDMIVATLVMSMGMMMMSPAALAL 267 Query: 222 PFKVIFFVLIDGWSLLVENLVKSF 245 PFK++FFVLIDGW++LV LV+SF Sbjct: 268 PFKILFFVLIDGWNILVSGLVRSF 291 >gi|264676604|ref|YP_003276510.1| flagellar biosynthetic protein FliP [Comamonas testosteroni CNB-2] gi|262207116|gb|ACY31214.1| flagellar biosynthetic protein FliP [Comamonas testosteroni CNB-2] Length = 249 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 95/247 (38%), Positives = 150/247 (60%), Gaps = 7/247 (2%) Query: 2 IRYCFFALFLVTPELVFAKS---SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIM 58 + A+ L P + A+S SL ++ A + + ++T FT LS P +L++ Sbjct: 5 VSRAAAAVLLAMPLMAAAQSAPASLPLLVGQGAGGTSYSVPIQTLLFFTALSFLPAILLL 64 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R +IV S+LR +G S PPN V+I L+LF+T +VM PTLD+ + P N Sbjct: 65 MTGFTRIVIVLSLLRQALGTQSAPPNQVVIGLSLFLTMFVMGPTLDKVYQDAYLPYTQNS 124 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ A+++ P FM TR+ D +LF +A T + R+L+P+F+ Sbjct: 125 ISFEQAMEKAEAPMRGFMLKQTRQSDFALFKRLAKLDANVT----AETAPLRVLVPAFVT 180 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF+I +PFL+IDM+V++I+M++GMMML P ++LPFK++ FVL DGW+L++ Sbjct: 181 SELKTAFQIGFMIFIPFLVIDMVVSSILMSLGMMMLSPVLVALPFKLMLFVLADGWNLII 240 Query: 239 ENLVKSF 245 +L SF Sbjct: 241 GSLAASF 247 >gi|330826721|ref|YP_004390024.1| flagellar biosynthetic protein FliP [Alicycliphilus denitrificans K601] gi|329312093|gb|AEB86508.1| flagellar biosynthetic protein FliP [Alicycliphilus denitrificans K601] Length = 251 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 87/222 (39%), Positives = 137/222 (61%), Gaps = 4/222 (1%) Query: 24 HDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPP 83 V+ A + + ++T FT LS P +L+M+T F R +IV S+LR +G PP Sbjct: 32 PLVVGSGAGGTSYSVPIQTLLFFTALSFLPAVLLMMTGFTRIVIVLSLLRQAIGTQQAPP 91 Query: 84 NLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREK 143 N V++ L+LF+T +VM PTLD+ + P N ++ A+ + P FM TR+ Sbjct: 92 NQVVVGLSLFLTLFVMGPTLDKVYQEAYVPYTTNALSFEQALAKAEAPMRGFMLKQTRQS 151 Query: 144 DLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVA 203 D +LF +A T + R+L+P+F+ SEL+ +F+IGF++ +PFLIIDM+V+ Sbjct: 152 DFALFARLAKLDEGVT----AETAPLRVLVPAFVTSELKTAFQIGFMVFIPFLIIDMVVS 207 Query: 204 TIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +++M++GMMML P ++LPFK++ FVL DGW+LL+ +L SF Sbjct: 208 SVLMSLGMMMLSPVLVALPFKLMLFVLADGWNLLIGSLAASF 249 >gi|330502776|ref|YP_004379645.1| flagellar biosynthesis protein FliP [Pseudomonas mendocina NK-01] gi|328917062|gb|AEB57893.1| flagellar biosynthesis protein FliP [Pseudomonas mendocina NK-01] Length = 261 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 93/209 (44%), Positives = 138/209 (66%), Gaps = 4/209 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + ++ I T LS P ++++T F R IIVFSILR +G+ P N +++ LALF+T Sbjct: 54 SVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILVGLALFLTM 113 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 ++M+P DR +QP +N +I A+ R P FM TRE DL+LF+ ++ Sbjct: 114 FIMAPVFDRINTDALQPYLNEEIIAQEALTRAEGPIRDFMLAQTRESDLALFVRLS---- 169 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 + TD+ + + IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA+I+MAMGMMML P Sbjct: 170 KRTDLAGVEDVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASILMAMGMMMLSP 229 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLPFK++ FVL+DGW+L++ L SF Sbjct: 230 LIISLPFKIMLFVLVDGWALIMGTLAASF 258 >gi|153825580|ref|ZP_01978247.1| flagellar biosynthetic protein FliP [Vibrio cholerae MZO-2] gi|149740731|gb|EDM54830.1| flagellar biosynthetic protein FliP [Vibrio cholerae MZO-2] Length = 299 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 89/206 (43%), Positives = 135/206 (65%), Gaps = 5/206 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + T+L P ++I++T F R ++V SILR MG+ P N VII +ALF+TF++M Sbjct: 97 LQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFIM 156 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +P ++ E +QP +N QIT A EP FM TR DL F++M+ Sbjct: 157 APVFNQINEQAVQPYLNEQITARQAFDLAQEPLKAFMLKQTRVNDLETFVEMSG-----A 211 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGMMML P + Sbjct: 212 QVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGMMMLSPMIV 271 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW+L++ L SF Sbjct: 272 SLPFKLMLFVLVDGWNLILSTLAGSF 297 >gi|153836933|ref|ZP_01989600.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus AQ3810] gi|149749706|gb|EDM60451.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus AQ3810] Length = 276 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 92/219 (42%), Positives = 137/219 (62%), Gaps = 5/219 (2%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 P + ++ + T+L P ++I++T F R ++V SILR MG+ P N V Sbjct: 61 TTNPDGSEDYSVTLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 120 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 II +ALF+TF+VMSP L+ + IQP +N Q+T A P FM TR KDL Sbjct: 121 IIGIALFLTFFVMSPVLNEINDTAIQPYLNEQVTAREAFDVAQVPMKAFMLKQTRIKDLE 180 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 F++M+ +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++ Sbjct: 181 TFVNMSG-----EQVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 235 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 236 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 274 >gi|138894755|ref|YP_001125208.1| flagellar biosynthesis protein FliP [Geobacillus thermodenitrificans NG80-2] gi|196247623|ref|ZP_03146325.1| flagellar biosynthetic protein FliP [Geobacillus sp. G11MC16] gi|134266268|gb|ABO66463.1| Flagellar protein [Geobacillus thermodenitrificans NG80-2] gi|196212407|gb|EDY07164.1| flagellar biosynthetic protein FliP [Geobacillus sp. G11MC16] Length = 222 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 94/195 (48%), Positives = 138/195 (70%), Gaps = 4/195 (2%) Query: 51 IAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMG 110 IAP +LIM+TCF R +IV S +RT +G +PPN V+I LALF+TF++M+PT + Sbjct: 31 IAPGILIMMTCFTRIVIVLSFVRTSLGTQQMPPNQVLIGLALFLTFFIMAPTWKDINDQA 90 Query: 111 IQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYR 170 +QPL +I A +R A P FM +TR++DL+LF+ + + T + I Sbjct: 91 LQPLFAEKIDLDEAYERAAIPLKQFMSKHTRQQDLALFLSYSGAEQPKT----VNDIPLT 146 Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230 L+P+F ISEL+ +F++GF+I +PFL+IDMIVA+++M+MGMMMLPP ISLPFK++ FVL Sbjct: 147 ALVPAFAISELKTAFQMGFMIFIPFLVIDMIVASVLMSMGMMMLPPVMISLPFKILLFVL 206 Query: 231 IDGWSLLVENLVKSF 245 +DGW L+V++L++SF Sbjct: 207 VDGWYLVVKSLLQSF 221 >gi|146307834|ref|YP_001188299.1| flagellar biosynthesis protein FliP [Pseudomonas mendocina ymp] gi|145576035|gb|ABP85567.1| flagellar biosynthetic protein FliP [Pseudomonas mendocina ymp] Length = 261 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 93/209 (44%), Positives = 138/209 (66%), Gaps = 4/209 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + ++ I T LS P ++++T F R IIVFSILR +G+ P N +++ LALF+T Sbjct: 54 SVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILVGLALFLTL 113 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 ++M+P DR +QP +N +I A+ R P FM TRE DL+LF+ ++ Sbjct: 114 FIMAPIFDRINTDALQPYLNEEIVAQEALTRAEGPIRDFMLAQTRESDLALFVRLS---- 169 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 + TD+ + + IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA+I+MAMGMMML P Sbjct: 170 KRTDLAGVEDVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASILMAMGMMMLSP 229 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLPFK++ FVL+DGW+L++ L SF Sbjct: 230 LIISLPFKIMLFVLVDGWALIMGTLAASF 258 >gi|121586791|ref|ZP_01676573.1| flagellar biosynthetic protein FliP [Vibrio cholerae 2740-80] gi|121548958|gb|EAX58997.1| flagellar biosynthetic protein FliP [Vibrio cholerae 2740-80] Length = 299 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 89/206 (43%), Positives = 135/206 (65%), Gaps = 5/206 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + T+L P ++I++T F R ++V SILR MG+ P N VII +ALF+TF++M Sbjct: 97 LQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFIM 156 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +P ++ E +QP +N QIT A EP FM TR DL F++M+ Sbjct: 157 APVFNQINEQAVQPYLNEQITARQAFDLAQEPLKAFMLKQTRVNDLETFVEMSG-----A 211 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGMMML P + Sbjct: 212 QVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGMMMLSPMIV 271 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW+L++ L SF Sbjct: 272 SLPFKLMLFVLVDGWNLILSTLAGSF 297 >gi|308048762|ref|YP_003912328.1| flagellar biosynthetic protein FliP [Ferrimonas balearica DSM 9799] gi|307630952|gb|ADN75254.1| flagellar biosynthetic protein FliP [Ferrimonas balearica DSM 9799] Length = 251 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 89/235 (37%), Positives = 146/235 (62%), Gaps = 6/235 (2%) Query: 13 TPELVFAKSSLHDVM--NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70 P L A + + P + ++ G+ T+L+ P ++I++T F R I+V + Sbjct: 16 VPSLALADPGIPAITLTTGPDGTQQYSVSLQILGLMTLLTFLPAMVILMTSFTRIIVVLA 75 Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130 ILR +G+ P N V++ +ALF++ ++M+P LDR E + P M QI A++R Sbjct: 76 ILRQALGLQQTPSNQVLLGMALFLSLFIMTPVLDRVYEDALVPYMGEQIGALEAMERAKA 135 Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190 P FM + TR D++ F++++ TDI D + +LIP+F+ SEL+ +F+IGF+ Sbjct: 136 PVKDFMLSQTRITDINTFVEISGR----TDIASVDEVPMTVLIPAFVTSELKTAFQIGFM 191 Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 + +PFL+ID++VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 192 LFVPFLVIDLVVASVLMAMGMMMLSPMIVSLPFKIMLFVLVDGWNLVMGTLATSF 246 >gi|187926923|ref|YP_001893268.1| flagellar biosynthetic protein FliP [Ralstonia pickettii 12J] gi|241665252|ref|YP_002983611.1| flagellar biosynthesis protein FliP [Ralstonia pickettii 12D] gi|187728677|gb|ACD29841.1| flagellar biosynthetic protein FliP [Ralstonia pickettii 12J] gi|240867279|gb|ACS64939.1| flagellar biosynthetic protein FliP [Ralstonia pickettii 12D] Length = 249 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 101/244 (41%), Positives = 146/244 (59%), Gaps = 6/244 (2%) Query: 4 YCFFALFLVTPEL-VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCF 62 AL P + A+ L ++ A T V+T T L P +++M++ F Sbjct: 10 LVTLALLGAAPAVFAQAQPGLP-LLTGTAGGQSYTLPVQTLIFLTSLGFLPAIILMMSSF 68 Query: 63 PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122 R IIV S+LR +G + PPN V+I LALF+TF+VMSP LD+ PL +N+IT Sbjct: 69 TRIIIVLSLLRHALGTQTTPPNQVLIGLALFLTFFVMSPVLDKVYTDAYVPLRDNKITVE 128 Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182 A+ A P FM TRE DL+LF+ M + I + R LIP+F+ SEL+ Sbjct: 129 QAMDTAATPLRQFMLKQTREPDLALFVKMGNMP----AIASPEQTPMRALIPAFVTSELK 184 Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242 +F+IGF I +PFL+ID++VA ++M+MGMMM+ P+ SLPFK++ FVL+DGW LL+ +L Sbjct: 185 SAFQIGFAIFIPFLVIDIVVAAVLMSMGMMMVTPSIFSLPFKIMLFVLVDGWHLLLGSLA 244 Query: 243 KSFI 246 +SF+ Sbjct: 245 QSFV 248 >gi|15642122|ref|NP_231754.1| flagellar biosynthesis protein FliP [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121727223|ref|ZP_01680390.1| flagellar biosynthetic protein FliP [Vibrio cholerae V52] gi|147674933|ref|YP_001217644.1| flagellar biosynthesis protein FliP [Vibrio cholerae O395] gi|153818972|ref|ZP_01971639.1| flagellar biosynthetic protein FliP [Vibrio cholerae NCTC 8457] gi|153822891|ref|ZP_01975558.1| flagellar biosynthetic protein FliP [Vibrio cholerae B33] gi|227082248|ref|YP_002810799.1| flagellar biosynthetic protein FliP [Vibrio cholerae M66-2] gi|229507792|ref|ZP_04397297.1| flagellar biosynthesis protein FliP [Vibrio cholerae BX 330286] gi|229511971|ref|ZP_04401450.1| flagellar biosynthesis protein FliP [Vibrio cholerae B33] gi|229513774|ref|ZP_04403236.1| flagellar biosynthesis protein FliP [Vibrio cholerae TMA 21] gi|229519107|ref|ZP_04408550.1| flagellar biosynthesis protein FliP [Vibrio cholerae RC9] gi|229522076|ref|ZP_04411493.1| flagellar biosynthesis protein FliP [Vibrio cholerae TM 11079-80] gi|229524125|ref|ZP_04413530.1| flagellar biosynthesis protein FliP [Vibrio cholerae bv. albensis VL426] gi|229607337|ref|YP_002877985.1| flagellar biosynthesis protein FliP [Vibrio cholerae MJ-1236] gi|254226359|ref|ZP_04919948.1| flagellar biosynthetic protein FliP [Vibrio cholerae V51] gi|254291359|ref|ZP_04962152.1| flagellar biosynthetic protein FliP [Vibrio cholerae AM-19226] gi|254849208|ref|ZP_05238558.1| flagellar biosynthesis protein FliP [Vibrio cholerae MO10] gi|255745138|ref|ZP_05419087.1| flagellar biosynthesis protein FliP [Vibrio cholera CIRS 101] gi|262153472|ref|ZP_06028602.1| flagellar biosynthesis protein FliP [Vibrio cholerae INDRE 91/1] gi|262167482|ref|ZP_06035188.1| flagellar biosynthesis protein FliP [Vibrio cholerae RC27] gi|262191372|ref|ZP_06049562.1| flagellar biosynthesis protein FliP [Vibrio cholerae CT 5369-93] gi|297582021|ref|ZP_06943940.1| flagellar biosynthetic protein FliP [Vibrio cholerae RC385] gi|298497855|ref|ZP_07007662.1| flagellar biosynthetic protein FliP [Vibrio cholerae MAK 757] gi|9656673|gb|AAF95268.1| flagellar biosynthetic protein FliP [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121630468|gb|EAX62861.1| flagellar biosynthetic protein FliP [Vibrio cholerae V52] gi|125621109|gb|EAZ49454.1| flagellar biosynthetic protein FliP [Vibrio cholerae V51] gi|126510467|gb|EAZ73061.1| flagellar biosynthetic protein FliP [Vibrio cholerae NCTC 8457] gi|126519587|gb|EAZ76810.1| flagellar biosynthetic protein FliP [Vibrio cholerae B33] gi|146316816|gb|ABQ21355.1| flagellar biosynthetic protein FliP [Vibrio cholerae O395] gi|150422689|gb|EDN14643.1| flagellar biosynthetic protein FliP [Vibrio cholerae AM-19226] gi|227010136|gb|ACP06348.1| flagellar biosynthetic protein FliP [Vibrio cholerae M66-2] gi|227014019|gb|ACP10229.1| flagellar biosynthetic protein FliP [Vibrio cholerae O395] gi|229337706|gb|EEO02723.1| flagellar biosynthesis protein FliP [Vibrio cholerae bv. albensis VL426] gi|229341001|gb|EEO06006.1| flagellar biosynthesis protein FliP [Vibrio cholerae TM 11079-80] gi|229343796|gb|EEO08771.1| flagellar biosynthesis protein FliP [Vibrio cholerae RC9] gi|229348955|gb|EEO13912.1| flagellar biosynthesis protein FliP [Vibrio cholerae TMA 21] gi|229351936|gb|EEO16877.1| flagellar biosynthesis protein FliP [Vibrio cholerae B33] gi|229355297|gb|EEO20218.1| flagellar biosynthesis protein FliP [Vibrio cholerae BX 330286] gi|229369992|gb|ACQ60415.1| flagellar biosynthesis protein FliP [Vibrio cholerae MJ-1236] gi|254844913|gb|EET23327.1| flagellar biosynthesis protein FliP [Vibrio cholerae MO10] gi|255736968|gb|EET92364.1| flagellar biosynthesis protein FliP [Vibrio cholera CIRS 101] gi|262024054|gb|EEY42749.1| flagellar biosynthesis protein FliP [Vibrio cholerae RC27] gi|262030709|gb|EEY49343.1| flagellar biosynthesis protein FliP [Vibrio cholerae INDRE 91/1] gi|262032747|gb|EEY51295.1| flagellar biosynthesis protein FliP [Vibrio cholerae CT 5369-93] gi|297533716|gb|EFH72558.1| flagellar biosynthetic protein FliP [Vibrio cholerae RC385] gi|297542188|gb|EFH78238.1| flagellar biosynthetic protein FliP [Vibrio cholerae MAK 757] Length = 299 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 89/206 (43%), Positives = 135/206 (65%), Gaps = 5/206 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + T+L P ++I++T F R ++V SILR MG+ P N VII +ALF+TF++M Sbjct: 97 LQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFIM 156 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +P ++ E +QP +N QIT A EP FM TR DL F++M+ Sbjct: 157 APVFNQINEQAVQPYLNEQITARQAFDLAQEPLKAFMLKQTRVNDLETFVEMSG-----A 211 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGMMML P + Sbjct: 212 QVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGMMMLSPMIV 271 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW+L++ L SF Sbjct: 272 SLPFKLMLFVLVDGWNLILSTLAGSF 297 >gi|83815985|ref|YP_446686.1| flagellar biosynthesis protein FliP [Salinibacter ruber DSM 13855] gi|83757379|gb|ABC45492.1| flagellar biosynthetic protein FliP [Salinibacter ruber DSM 13855] Length = 279 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 90/206 (43%), Positives = 142/206 (68%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + T+L++AP ++I++T F R ++VFSILR +G+ PP V+I L+LF++ ++M Sbjct: 75 IQLLLLLTVLTLAPAIIILMTSFTRLVVVFSILRRALGLQRSPPRQVVIGLSLFLSLFIM 134 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P L+ + ++P ++N+IT+ A R + P FM +TR+KDL LFMDM Sbjct: 135 QPVLETVHQDALRPYLDNEITQQEAFDRASTPMKRFMLTHTRDKDLMLFMDMGEI----E 190 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 D +++P+F+ISELR +F+IGF+I LPFLI+D++VA+I+M+MGMMMLPP I Sbjct: 191 SFEGPDEAPLYVVVPAFVISELRIAFQIGFMIFLPFLIVDLVVASILMSMGMMMLPPVMI 250 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLP K++ FVL DGW L+VE+L++ + Sbjct: 251 SLPIKLLLFVLTDGWYLIVESLMQGY 276 >gi|308063526|gb|ADO05413.1| flagellar biosynthesis protein FliP [Helicobacter pylori Sat464] Length = 248 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 104/227 (45%), Positives = 157/227 (69%), Gaps = 4/227 (1%) Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 A S++ +N P D + + T+L +AP L++++T F R I+VFS LRT +G Sbjct: 23 ALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGT 82 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ A PF FM Sbjct: 83 QQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLK 142 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 NTREKDL+LF + + + T D + +LIP+FMISEL+ +F+IGFL+ LPFL+I Sbjct: 143 NTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVI 198 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 DM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENLV SF Sbjct: 199 DMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 245 >gi|17548596|ref|NP_521936.1| flagellar biosynthesis protein FliP [Ralstonia solanacearum GMI1000] gi|17430844|emb|CAD17526.1| probable flagellar biosynthetic flip transmembrane protein [Ralstonia solanacearum GMI1000] Length = 249 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 98/229 (42%), Positives = 140/229 (61%), Gaps = 5/229 (2%) Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 A+ L + S S V+T T L P +L+M++ F R IIV S+LR + Sbjct: 24 AQAQPGLPLLTGTAGGQSYSL-PVQTLVFLTSLGFLPAILLMMSSFTRIIIVLSLLRHAL 82 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G + PPN V+I LALF+TF+VMSP LD+ PL +++I+ A+ A P FM Sbjct: 83 GTQTTPPNQVLIGLALFLTFFVMSPVLDKVYTDAYLPLRDSKISVEQALDTAATPLRQFM 142 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 TRE DL+LF M + I D + R LIP+F+ SEL+ +F+IGF I +PFL Sbjct: 143 LKQTREPDLALFAKMGNLP----PIASPDQVPMRALIPAFVTSELKTAFQIGFAIFIPFL 198 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +ID++VA ++M+MGMMM+ P+ SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 199 VIDIVVAAVLMSMGMMMVTPSIFSLPFKIMLFVLVDGWHLLLGSLAQSF 247 >gi|116694514|ref|YP_728725.1| flagellar biosynthesis protein FliP [Ralstonia eutropha H16] gi|113529013|emb|CAJ95360.1| flagellar biosynthesis protein [Ralstonia eutropha H16] Length = 261 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 96/217 (44%), Positives = 145/217 (66%), Gaps = 4/217 (1%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P I + V+T + T LS P ++++T F R IIV +LR+ +G + PPN V++ Sbjct: 48 PGGGQIWSLPVQTLVLLTSLSFLPAAMLLMTGFTRIIIVLGLLRSALGTATSPPNQVLVG 107 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 L+LF+TF+VM+P DR +PL N+I+ A + AEP FM TREKDL++F Sbjct: 108 LSLFLTFFVMAPVFDRVYNDAYKPLSENKISLEAAAAKAAEPLKAFMLRQTREKDLAMFA 167 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 MA + ++ + + IL+P+F+ SEL+ +F+IGF I +PFLIID++VA+++MAM Sbjct: 168 QMAKAP----EMQGPEEVPLSILVPAFVTSELKTAFQIGFTIFIPFLIIDLVVASVLMAM 223 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF+ Sbjct: 224 GMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSFM 260 >gi|300693349|ref|YP_003749322.1| flip: flagellar biosynthesis protein. flip/mopc/spap family [Ralstonia solanacearum PSI07] gi|299075386|emb|CBJ34681.1| fliP: flagellar biosynthesis protein. fliP/mopC/spaP family [Ralstonia solanacearum PSI07] Length = 249 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 98/229 (42%), Positives = 140/229 (61%), Gaps = 5/229 (2%) Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 A+ L + S S V+T T L P +L+M++ F R IIV S+LR + Sbjct: 24 AQAQPGLPLLTGTAGGQSYSL-PVQTLVFLTSLGFLPAILLMMSSFTRIIIVLSLLRHAL 82 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G + PPN V+I LALF+TF+VMSP LD+ PL +++I+ A+ A P FM Sbjct: 83 GTQTTPPNQVLIGLALFLTFFVMSPVLDKVYTDAYVPLRDSKISVEQALDTAATPMRQFM 142 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 TRE DL+LF M + I D + R LIP+F+ SEL+ +F+IGF I +PFL Sbjct: 143 LKQTREPDLALFAKMGNLP----PIASPDQVPMRALIPAFVTSELKTAFQIGFAIFIPFL 198 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +ID++VA ++M+MGMMM+ P+ SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 199 VIDIVVAAVLMSMGMMMVTPSIFSLPFKIMLFVLVDGWHLLLGSLAQSF 247 >gi|294013059|ref|YP_003546519.1| flagellar biosynthetic protein FliP [Sphingobium japonicum UT26S] gi|292676389|dbj|BAI97907.1| flagellar biosynthetic protein FliP [Sphingobium japonicum UT26S] Length = 288 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 89/218 (40%), Positives = 137/218 (62%), Gaps = 4/218 (1%) Query: 28 NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87 I D + ++ + ++L++ P L++M+T F R IIV S+LR +G+ PPN V+ Sbjct: 73 QISGDGRSLSLSLQILILMSLLTVLPSLILMMTSFTRIIIVLSLLRQALGLQQTPPNQVL 132 Query: 88 ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147 + L+LF++ +VM P +D+ P QI+ A+ R + FM TRE DL L Sbjct: 133 VGLSLFLSLFVMRPAIDQINGQAFDPYGKGQISIEEAVGRSGKVLHGFMTKQTRETDLKL 192 Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 F ++A + T I + IL+P+F+ SEL+ +F+IGF+I LPFLIID++VA+ +M Sbjct: 193 FQNLAEAPAFRTPA----DIPFSILLPAFVTSELKTAFQIGFMIFLPFLIIDLVVASTLM 248 Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 A+GMMML PT IS+PFK++ FVL+DGW+L + +L SF Sbjct: 249 ALGMMMLSPTIISMPFKLLLFVLVDGWALTMGSLAGSF 286 >gi|323136548|ref|ZP_08071629.1| flagellar biosynthetic protein FliP [Methylocystis sp. ATCC 49242] gi|322397865|gb|EFY00386.1| flagellar biosynthetic protein FliP [Methylocystis sp. ATCC 49242] Length = 243 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 120/245 (48%), Positives = 165/245 (67%), Gaps = 4/245 (1%) Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADL-SISTWIVRTFGIFTILSIAPILLIMVT 60 + ++TP + FA L +P S S I++ G T+LSIAP LLIMVT Sbjct: 1 MNRLLIIGVMMTPSIAFAAEGLDLNALLPNGAASSSGKIIQLLGALTVLSIAPGLLIMVT 60 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F RF I S LRTG+G+ S P NLV+ISLALFMTFYVM+P ++++ G++PL+ N+IT Sbjct: 61 SFTRFAIALSFLRTGLGLQSTPANLVLISLALFMTFYVMTPAMNQAWSSGVKPLVENKIT 120 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 E A ++++ PF FM + R+KD+ LF D+ T+ +LIP+FMISE Sbjct: 121 EVEAFEKISAPFREFMIAHVRDKDIRLFEDLRKVEPSTKGKTELQ---LSVLIPAFMISE 177 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 LRR FEIGFLI++PFL ID+IVA + M+MGMMMLPP +ISLP K++FF+LIDGW+LL + Sbjct: 178 LRRGFEIGFLIVVPFLAIDIIVAVLTMSMGMMMLPPATISLPAKILFFILIDGWNLLAGS 237 Query: 241 LVKSF 245 L++S+ Sbjct: 238 LIRSY 242 >gi|254779331|ref|YP_003057436.1| flagellar biosynthesis protein FliP [Helicobacter pylori B38] gi|254001242|emb|CAX29217.1| Flagellar biosynthetic protein FliP [Helicobacter pylori B38] Length = 248 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 104/227 (45%), Positives = 157/227 (69%), Gaps = 4/227 (1%) Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 A S++ +N P D + + T+L +AP L++++T F R I+VFS LRT +G Sbjct: 23 ALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGT 82 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ A PF FM Sbjct: 83 QQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLK 142 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 NTREKDL+LF + + + T D + +LIP+FMISEL+ +F+IGFL+ LPFL+I Sbjct: 143 NTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVI 198 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 DM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENLV SF Sbjct: 199 DMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 245 >gi|323491455|ref|ZP_08096639.1| flagellar biosynthesis protein FliP [Vibrio brasiliensis LMG 20546] gi|323314324|gb|EGA67404.1| flagellar biosynthesis protein FliP [Vibrio brasiliensis LMG 20546] Length = 291 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 93/237 (39%), Positives = 143/237 (60%), Gaps = 7/237 (2%) Query: 11 LVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIV 68 + T LV + + + + + + T+L P ++I++T F R ++V Sbjct: 58 IATGSLVGSGGGIPAFTMTTNSDGSEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVV 117 Query: 69 FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128 SILR MG+ P N VII +A+F+TF++MSP L + + IQP +N QIT A Sbjct: 118 MSILRQAMGLQQTPSNQVIIGIAIFLTFFIMSPVLSKINDDAIQPYINEQITARQAFDLA 177 Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188 P FM TR KDL F++++ S+ T + + +LIP+F+ SEL+ +F+IG Sbjct: 178 QTPMKDFMLKQTRVKDLETFVNISGST-----ATAPEDVSMAVLIPAFITSELKTAFQIG 232 Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 F++ LPFLIID++VA+++MAMGMMML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 233 FMLFLPFLIIDLVVASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 289 >gi|297379879|gb|ADI34766.1| flagellar biosynthetic protein FliP [Helicobacter pylori v225d] Length = 248 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 103/227 (45%), Positives = 157/227 (69%), Gaps = 4/227 (1%) Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 A S++ +N P D + + T+L +AP L++++T F R I+VFS LRT +G Sbjct: 23 ALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGT 82 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 PP +++SL+L +TF++M P+L ++ + GI+P ++ +I+ T A ++ A PF FM Sbjct: 83 QQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYVDKKISYTEAFEKSALPFKEFMLK 142 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 NTREKDL+LF + + + T D + +LIP+FMISEL+ +F+IGFL+ LPFL+I Sbjct: 143 NTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVI 198 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 DM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENLV SF Sbjct: 199 DMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 245 >gi|254519408|ref|ZP_05131464.1| flagellar biosynthetic protein FliP [Clostridium sp. 7_2_43FAA] gi|226913157|gb|EEH98358.1| flagellar biosynthetic protein FliP [Clostridium sp. 7_2_43FAA] Length = 257 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 83/193 (43%), Positives = 129/193 (66%), Gaps = 3/193 (1%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P ++IM+T F R I+VFS L++ +G PN ++I LALF+T ++M P + Sbjct: 66 PSIIIMMTSFTRIIVVFSFLKSALGAQQSIPNQILIGLALFLTIFIMQPVYSEINNNAFK 125 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P M N IT+ A++ ++P FM TR+KDL LF++ + D+I ++ Sbjct: 126 PFMENTITQDEAMEAGSKPLREFMLKQTRQKDLELFIETSKLDKEEI---TRDNIPLTVV 182 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 IP+F ISEL+ +F+IGFL+ LPFLIIDM+VA+++M+MGM M+PP ++LPFK++ FV++D Sbjct: 183 IPAFAISELKTAFQIGFLLFLPFLIIDMVVASVLMSMGMFMVPPVMVALPFKLLLFVMVD 242 Query: 233 GWSLLVENLVKSF 245 GW L+V++L+ SF Sbjct: 243 GWYLMVKSLIMSF 255 >gi|109947417|ref|YP_664645.1| flagellar biosynthesis protein FliP [Helicobacter acinonychis str. Sheeba] gi|109714638|emb|CAJ99646.1| flagellar biosynthesis protein [Helicobacter acinonychis str. Sheeba] Length = 248 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 106/242 (43%), Positives = 160/242 (66%), Gaps = 4/242 (1%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63 + FAL S++ +N P D + + T+L +AP L++++T F Sbjct: 8 FLIFALICPLMSTDNTLPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFT 67 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 R I+VFS LRT +G PP +++SL+L +TF++M P+L ++ ++GI+P M+ +I+ T Sbjct: 68 RLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDIGIKPYMDKKISYTE 127 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 A ++ A PF FM NTREKDL+LF + + T D + +LIP+FMISEL+ Sbjct: 128 AFEKSALPFKEFMLKNTREKDLALFFRIRQLPNPKT----PDDVSLSVLIPAFMISELKT 183 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENLV Sbjct: 184 AFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVA 243 Query: 244 SF 245 SF Sbjct: 244 SF 245 >gi|307637369|gb|ADN79819.1| Flagellar biosynthesis protein [Helicobacter pylori 908] gi|325997557|gb|ADZ49765.1| Flagellar biosynthesis protein [Helicobacter pylori 2017] Length = 250 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 109/251 (43%), Positives = 166/251 (66%), Gaps = 10/251 (3%) Query: 1 MIRYCFFALFLVTPELV------FAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPI 54 M + F L L+ P + A S++ +N P+D + + T+L +AP Sbjct: 1 MRFFIFLMLALICPLICPLMSADSALPSVNLSLNAPSDPKQLVTTLNVIALLTLLVLAPS 60 Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114 L++++T F R I+VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+P Sbjct: 61 LILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPY 120 Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174 M+ +I+ T A ++ A PF FM NTREKDL+LF + + + T D + +LIP Sbjct: 121 MDKKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKT----PDDVSLSVLIP 176 Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234 +FMISEL+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG+ Sbjct: 177 AFMISELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGF 236 Query: 235 SLLVENLVKSF 245 +LL ENLV SF Sbjct: 237 NLLTENLVASF 247 >gi|315648123|ref|ZP_07901224.1| flagellar biosynthetic protein FliP [Paenibacillus vortex V453] gi|315276769|gb|EFU40112.1| flagellar biosynthetic protein FliP [Paenibacillus vortex V453] Length = 250 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 93/242 (38%), Positives = 148/242 (61%), Gaps = 5/242 (2%) Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSI-APILLIMVTCFP 63 F + FA + + I + + + + AP +L+++T F Sbjct: 11 IFILFGFLFSHTAFADPIPNIDIQIGNEGDTPGTSSLSLILLITILSIAPAILVLMTSFT 70 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 R +IV +RT +G PPN V+I LALF+T +VM+PTL ++ +QP + +I++T Sbjct: 71 RIVIVLGFVRTSLGTMQTPPNQVLIGLALFLTLFVMAPTLSSINDVALQPYLKGEISQTE 130 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 A+ + +P FM ++TREKDL LFM+ + T + I +L+P+F ISEL+ Sbjct: 131 ALDKAQDPMKKFMFSHTREKDLLLFMNYTGAEKPET----YEDIPLTVLVPAFAISELKT 186 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 F++GF+I +PFL+ID++VA+++MAMGMMMLPP ISLPFK++ FVL+DGW L+V++++ Sbjct: 187 GFQMGFMIFIPFLVIDIVVASVLMAMGMMMLPPVMISLPFKILLFVLVDGWYLVVKSMLM 246 Query: 244 SF 245 SF Sbjct: 247 SF 248 >gi|162147465|ref|YP_001601926.1| flagellar biosynthesis protein FliP [Gluconacetobacter diazotrophicus PAl 5] gi|161786042|emb|CAP55624.1| putative flagellar biosynthetic protein fliP [Gluconacetobacter diazotrophicus PAl 5] Length = 259 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 103/238 (43%), Positives = 155/238 (65%), Gaps = 4/238 (1%) Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67 A+ P L A+S D+ D ++ +V+ + TILS+AP LL+MVT F R I+ Sbjct: 24 AVLAGMPTLAHAQSLSLDLGKGMGDAGTTSRLVQLTALITILSLAPSLLVMVTAFTRIIV 83 Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127 V S+LR +G PPN V+I LALF+TF+VM P +S + GI P+M+ +++E + Sbjct: 84 VLSLLRGAIGAQGAPPNTVLIGLALFLTFFVMQPVFQQSWDHGIVPMMDGRVSEMEGLTA 143 Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187 AEPF FM N R D++ F+ +A+ T +R+++P+FMI EL R FE+ Sbjct: 144 AAEPFRTFMLANARPADITTFLHLANVPPPATPAETP----WRVIMPAFMIGELSRGFEM 199 Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GFL+ LPFL+ID++ ++++M++GMMMLPP +ISLPFK+IFFV++DGW ++ LV+SF Sbjct: 200 GFLLYLPFLVIDIVTSSVLMSLGMMMLPPATISLPFKLIFFVMVDGWQMVAGGLVRSF 257 >gi|207728358|ref|YP_002256752.1| flagellar biosynthetic protein flip [Ralstonia solanacearum MolK2] gi|206591604|emb|CAQ57216.1| flagellar biosynthetic protein flip [Ralstonia solanacearum MolK2] Length = 252 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 99/229 (43%), Positives = 140/229 (61%), Gaps = 5/229 (2%) Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 A+ L + S S V+T T L P +L+M++ F R IIV S+LR + Sbjct: 27 AQAQPGLPLLTGAAGGQSYSL-PVQTLVFLTSLGFLPAILLMMSSFTRIIIVLSLLRHAL 85 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G + PPN V+I LALF+TF+VMSP LD+ PL +++I+ A+ A P FM Sbjct: 86 GTQTTPPNQVLIGLALFLTFFVMSPVLDKVYTDAYVPLRDSKISVEQALDTAATPLRQFM 145 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 TRE DL+LF M + I D + R LIP+F+ SEL+ SF+IGF I +PFL Sbjct: 146 LKQTREPDLALFAKMGNLP----PIASPDQVPMRALIPAFVTSELKTSFQIGFAIFIPFL 201 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +ID++VA ++M+MGMMM+ P+ SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 202 VIDIVVAAVLMSMGMMMVTPSIFSLPFKIMLFVLVDGWHLLLGSLAQSF 250 >gi|325273552|ref|ZP_08139782.1| flagellar biosynthesis protein FliP [Pseudomonas sp. TJI-51] gi|324101312|gb|EGB98928.1| flagellar biosynthesis protein FliP [Pseudomonas sp. TJI-51] Length = 255 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 95/220 (43%), Positives = 139/220 (63%), Gaps = 4/220 (1%) Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85 + N + ++ I T LS P +I++T F R IIVFSILR +G+ P N Sbjct: 37 LSNTADGQQEYSVSLQILLIMTALSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQ 96 Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145 ++ +ALF+T ++M+P DR + +QP + Q+T AI + P FM TR+ DL Sbjct: 97 LLTGMALFLTMFIMAPVFDRVNQDALQPYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDL 156 Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205 LFM ++ + TDI D + IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA++ Sbjct: 157 DLFMRLS----KRTDIAGPDQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASV 212 Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MAMGMMML P ISLPFK++ FVL+DGW+L++ L SF Sbjct: 213 LMAMGMMMLSPLIISLPFKIMLFVLVDGWALIMGTLASSF 252 >gi|108563093|ref|YP_627409.1| flagellar biosynthesis protein FliP [Helicobacter pylori HPAG1] gi|107836866|gb|ABF84735.1| flagellar biosynthetic protein [Helicobacter pylori HPAG1] gi|261839493|gb|ACX99258.1| flagellar biosynthesis protein FliP [Helicobacter pylori 52] gi|308062010|gb|ADO03898.1| flagellar biosynthesis protein FliP [Helicobacter pylori Cuz20] gi|317009302|gb|ADU79882.1| flagellar biosynthesis protein FliP [Helicobacter pylori India7] gi|317012496|gb|ADU83104.1| flagellar biosynthesis protein FliP [Helicobacter pylori Lithuania75] gi|317177503|dbj|BAJ55292.1| flagellar biosynthesis protein FliP [Helicobacter pylori F16] gi|317178956|dbj|BAJ56744.1| flagellar biosynthesis protein FliP [Helicobacter pylori F30] gi|317181997|dbj|BAJ59781.1| flagellar biosynthesis protein FliP [Helicobacter pylori F57] Length = 248 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 104/227 (45%), Positives = 157/227 (69%), Gaps = 4/227 (1%) Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 A S++ +N P D + + T+L +AP L++++T F R I+VFS LRT +G Sbjct: 23 ALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGT 82 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ A PF FM Sbjct: 83 QQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLK 142 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 NTREKDL+LF + + + T D + +LIP+FMISEL+ +F+IGFL+ LPFL+I Sbjct: 143 NTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVI 198 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 DM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENLV SF Sbjct: 199 DMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 245 >gi|254433683|ref|ZP_05047191.1| flagellar biosynthetic protein FliP [Nitrosococcus oceani AFC27] gi|207090016|gb|EDZ67287.1| flagellar biosynthetic protein FliP [Nitrosococcus oceani AFC27] Length = 243 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 96/233 (41%), Positives = 150/233 (64%), Gaps = 6/233 (2%) Query: 15 ELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72 +A + + T+ V + G+ T+L++ P ++++T F R I+VFSIL Sbjct: 11 AAGWAAPGVPALAVTADGNGEQTYTVTLQILGLMTVLTLLPAAVMVMTSFTRIIVVFSIL 70 Query: 73 RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132 R +G+ P + ++I LALF+TF++MSP LD++ + G++P +I+ T A+ RV EPF Sbjct: 71 RQALGLAQTPSSQILIGLALFLTFFIMSPVLDKAYQEGVKPYFQEEISVTDALARVREPF 130 Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192 FM TRE DL LF +++ + + + +L+P+F+ SEL+ +F+IGFL+ Sbjct: 131 HHFMIAQTRETDLKLFAEISGR----EAFESPEQVPFSLLVPAFITSELKTAFQIGFLLF 186 Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PFLIID++VA+++MAMGMMML P +SLPFK++ FVLIDGWSLL+ L SF Sbjct: 187 IPFLIIDLVVASVLMAMGMMMLSPMLVSLPFKLLLFVLIDGWSLLMGTLASSF 239 >gi|152986552|ref|YP_001349235.1| flagellar biosynthesis protein FliP [Pseudomonas aeruginosa PA7] gi|150961710|gb|ABR83735.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa PA7] Length = 255 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 96/220 (43%), Positives = 139/220 (63%), Gaps = 4/220 (1%) Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85 V + ++ I T LS P ++++T F R IIVFSILR +G+ S P N Sbjct: 37 VTTNGQGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQ 96 Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145 V++ LALF+T +VM+P DR +QP +N QI A+QR P FM TR DL Sbjct: 97 VLVGLALFLTMFVMAPVFDRINSQALQPYLNEQIPAQEALQRAEVPLKAFMLAQTRTSDL 156 Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205 LF+ ++ + TDI+ + IL+P+F+ SEL+ +F+IGF+I +PFLIID++V+++ Sbjct: 157 ELFVRLS----KRTDISGPEATPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSV 212 Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MAMGMMML P ISLPFK++ FVL+DGW+L++ L SF Sbjct: 213 LMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLAGSF 252 >gi|170725983|ref|YP_001760009.1| flagellar biosynthesis protein FliP [Shewanella woodyi ATCC 51908] gi|169811330|gb|ACA85914.1| flagellar biosynthetic protein FliP [Shewanella woodyi ATCC 51908] Length = 248 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 89/232 (38%), Positives = 140/232 (60%), Gaps = 7/232 (3%) Query: 17 VFAKSSLHDVMNIPADLSISTW---IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73 +FA+ + + + T ++ + T LS P +LIM+T F R IIV SILR Sbjct: 19 IFAQDGILPAVTVSTGADGDTQYSVTMQILLLMTALSFLPAMLIMLTSFTRIIIVLSILR 78 Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133 +G+ P N V+I +++F+TF++MSP D+ + ++P MN + A EP Sbjct: 79 QAIGLQQTPSNQVLIGMSMFLTFFIMSPVFDKVYDSAVKPYMNESMNIEQAFHVGKEPIK 138 Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193 FM TR DL F++++ +I D ++IP+F+ SEL+ +F+IGF++ + Sbjct: 139 EFMLAQTRVTDLETFVEISG----YQNINSVDEAPMSVIIPAFITSELKTAFQIGFMLFV 194 Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 PFL++D++VA+I+MAMGMMML P +SLPFK++ FVL+DGWSL++ L SF Sbjct: 195 PFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVMGTLANSF 246 >gi|291326353|ref|ZP_06124191.2| flagellar biosynthetic protein FliP [Providencia rettgeri DSM 1131] gi|291314687|gb|EFE55140.1| flagellar biosynthetic protein FliP [Providencia rettgeri DSM 1131] Length = 215 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 95/215 (44%), Positives = 140/215 (65%), Gaps = 4/215 (1%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 + V+T T+L P LL+M+T F R IIV +LR +G S PPN V++ L Sbjct: 3 DGGQTWSLPVQTLLFLTLLGFIPALLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVLLGL 62 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 ALF+TF+VMSP D+ QP ++I+ TA+++ P FM TRE DL+LF Sbjct: 63 ALFLTFFVMSPVADQVYREAYQPFSEDKISLETALEKGTAPLRTFMLGQTRESDLALFAR 122 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 +A +I + + RIL+P+F+ SEL+ +F+IGF I +PFLIID++VA+++MA+G Sbjct: 123 IAKVG----EIQEAKDVPLRILVPAFITSELKTAFQIGFTIFIPFLIIDLVVASVLMALG 178 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMM+PP ++SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 179 MMMVPPATVSLPFKLMLFVLVDGWQLLLGSLSQSF 213 >gi|291617858|ref|YP_003520600.1| FliP [Pantoea ananatis LMG 20103] gi|291152888|gb|ADD77472.1| FliP [Pantoea ananatis LMG 20103] gi|327394275|dbj|BAK11697.1| flagellar biosynthetic protein FliP precursor [Pantoea ananatis AJ13355] Length = 244 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 96/229 (41%), Positives = 150/229 (65%), Gaps = 6/229 (2%) Query: 19 AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 A + L +++ P +W V+T T L+ P +L+M+T F R IIVF +LR + Sbjct: 18 AHAQLPGLVSQPLANGGQSWSLPVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNAL 77 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G S PPN V++ L LF+TF++M+PT D+ + P ++I+ AI + A+P FM Sbjct: 78 GTPSAPPNQVLLGLTLFLTFFIMAPTFDKIYQDAYLPFSQDKISMDVAIDKGAQPLREFM 137 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 TRE DL+LF +A++ I + + RIL+P+++ SEL+ +F+IGF + +PFL Sbjct: 138 LRQTREADLALFARLANT----APIAGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFL 193 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IID++VA+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 194 IIDLVVASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 242 >gi|332673532|gb|AEE70349.1| flagellar biosynthetic protein FliP [Helicobacter pylori 83] Length = 248 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 103/227 (45%), Positives = 156/227 (68%), Gaps = 4/227 (1%) Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 A S++ +N P D + + T+L +AP L++++T F R I+VFS LRT +G Sbjct: 23 ALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGT 82 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ PF FM Sbjct: 83 QQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSTLPFKEFMLK 142 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 NTREKDL+LF + + + T D + +LIP+FMISEL+ +F+IGFL+ LPFL+I Sbjct: 143 NTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVI 198 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 DM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENLV SF Sbjct: 199 DMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 245 >gi|315586640|gb|ADU41021.1| flagellar biosynthetic protein FliP [Helicobacter pylori 35A] Length = 248 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 105/227 (46%), Positives = 157/227 (69%), Gaps = 4/227 (1%) Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 A S++ +N P D + + T+L +AP L++++T F R I+VFS LRT +G Sbjct: 23 ALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGT 82 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ A PF FM Sbjct: 83 QQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLK 142 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 NTREKDL+LF + + + T D + +LIP+FMISEL+ +F+IGFL+ LPFL+I Sbjct: 143 NTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVI 198 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 DM++++I+MAMGMMMLPP ISLPFKV+ F+L+DG++LL ENLV SF Sbjct: 199 DMVISSILMAMGMMMLPPVMISLPFKVLVFILVDGFNLLTENLVASF 245 >gi|257866390|ref|ZP_05646043.1| flagellar biosynthesis protein P [Enterococcus casseliflavus EC30] gi|257871301|ref|ZP_05650954.1| flagellar biosynthesis protein P [Enterococcus gallinarum EG2] gi|257873094|ref|ZP_05652747.1| flagellar biosynthesis protein P [Enterococcus casseliflavus EC10] gi|257876003|ref|ZP_05655656.1| flagellar biosynthesis protein P [Enterococcus casseliflavus EC20] gi|257800348|gb|EEV29376.1| flagellar biosynthesis protein P [Enterococcus casseliflavus EC30] gi|257805465|gb|EEV34287.1| flagellar biosynthesis protein P [Enterococcus gallinarum EG2] gi|257807258|gb|EEV36080.1| flagellar biosynthesis protein P [Enterococcus casseliflavus EC10] gi|257810169|gb|EEV38989.1| flagellar biosynthesis protein P [Enterococcus casseliflavus EC20] Length = 271 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 104/248 (41%), Positives = 157/248 (63%), Gaps = 8/248 (3%) Query: 1 MIRYCFFALFLVTPELVFAKSS---LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLI 57 M F +L L P+ FA + + N+ ++ + S+ + TF + T+LS+ P+LLI Sbjct: 28 MAAVLFSSLML--PQTAFALDTEDVSSTINNLLSNGNGSSDTINTFLLLTLLSLLPVLLI 85 Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 M+T F R I+V S +R+ +G PPN V+I LALF+TF++M P + I+P Sbjct: 86 MMTSFTRIIMVLSFVRSSLGTQQNPPNQVLIGLALFLTFFIMKPVYTDVYQQAIEPFDRQ 145 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177 +I++ A R + FM TREKD++LF A + +D + +++P+F+ Sbjct: 146 EISQAEAFDRSEKRIKAFMMVQTREKDIALF---AEADGETEKYHSSDDVPLTVMVPAFI 202 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 ISELR +F IGFLI +PFLIID++V++I+M+MGMMML P ISLPFK++ FVL+DGW L+ Sbjct: 203 ISELRTAFSIGFLIFIPFLIIDLVVSSILMSMGMMMLSPIMISLPFKILLFVLVDGWYLI 262 Query: 238 VENLVKSF 245 VE+L+KSF Sbjct: 263 VESLIKSF 270 >gi|167034912|ref|YP_001670143.1| flagellar biosynthesis protein FliP [Pseudomonas putida GB-1] gi|166861400|gb|ABY99807.1| flagellar biosynthetic protein FliP [Pseudomonas putida GB-1] Length = 251 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 95/220 (43%), Positives = 139/220 (63%), Gaps = 4/220 (1%) Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85 + N + ++ I T LS P +I++T F R IIVFSILR +G+ P N Sbjct: 33 LSNTADGQQEYSVSLQILLIMTALSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQ 92 Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145 ++ +ALF+T ++M+P DR + +QP + Q+T AI + P FM TR+ DL Sbjct: 93 LLTGMALFLTMFIMAPVFDRVNQDALQPYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDL 152 Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205 LFM ++ + TDI D + IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA++ Sbjct: 153 DLFMRLS----KRTDIAGPDQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASV 208 Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MAMGMMML P ISLPFK++ FVL+DGW+L++ L SF Sbjct: 209 LMAMGMMMLSPLIISLPFKIMLFVLVDGWALIMGTLASSF 248 >gi|317051545|ref|YP_004112661.1| flagellar biosynthetic protein FliP [Desulfurispirillum indicum S5] gi|316946629|gb|ADU66105.1| flagellar biosynthetic protein FliP [Desulfurispirillum indicum S5] Length = 253 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 97/220 (44%), Positives = 149/220 (67%), Gaps = 4/220 (1%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 + +D S ++ + TIL++AP +L+++T F R +IV S LR MG PPN V Sbjct: 36 VESSSDPSNVAVTLQILFLLTILTLAPSILVLMTSFVRILIVLSFLRQAMGTMQSPPNQV 95 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 ++SLALF+TFY+M PT + ++ +QP +N +I A+ A P FM +TREKDL+ Sbjct: 96 LVSLALFLTFYIMMPTFQQINDVALQPYLNQEIGTQEALDNAARPLSEFMLKHTREKDLA 155 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 LF+ + T + + + L+P+F+ISEL+ +F++GF+I +PFLIIDM+VA+ + Sbjct: 156 LFVHFSGDERPAT----KEDVSFFTLVPAFVISELKTAFQMGFMIFIPFLIIDMVVASTL 211 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 M+MGMMMLPP IS+PFKVI FVL+DGW+L++ +L++SF+ Sbjct: 212 MSMGMMMLPPAMISMPFKVILFVLVDGWNLVMSSLLRSFV 251 >gi|225849157|ref|YP_002729321.1| flagellar biosynthetic protein FliP [Sulfurihydrogenibium azorense Az-Fu1] gi|225644291|gb|ACN99341.1| flagellar biosynthetic protein FliP [Sulfurihydrogenibium azorense Az-Fu1] Length = 239 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 101/239 (42%), Positives = 155/239 (64%), Gaps = 6/239 (2%) Query: 8 ALFLVTPELVFAKSSLHDVMNIP-ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66 ALF++ VF S D++ + + ++ + T+LSIAP +LI +T F R + Sbjct: 4 ALFILLSLFVFFDFSQADLLTETLQNFNRLDTSLKILLLITVLSIAPAILISMTSFVRIV 63 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IV S+LR +G+ + PPN VI+ LALF+TF++M P D+ E+ + P + QI++ AI+ Sbjct: 64 IVLSLLRHALGIPTAPPNQVIVGLALFLTFFIMKPVFDKINEVSLTPYLKKQISDVQAIE 123 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 +P FM NTR++DL LF+D++ K + + LIP+FMISE++ +FE Sbjct: 124 NAKQPLKEFMLKNTRKEDLKLFIDISKEKP-----QKLEDVSMTTLIPAFMISEIKTAFE 178 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 I F+I LPF++ID +VA+I+M+MGMMM+PP ISLPFK++ FVL DGW LL + L++S+ Sbjct: 179 IVFIIYLPFIVIDFVVASILMSMGMMMVPPMFISLPFKLMLFVLADGWELLTKALIQSY 237 >gi|297617154|ref|YP_003702313.1| flagellar biosynthetic protein FliP [Syntrophothermus lipocalidus DSM 12680] gi|297144991|gb|ADI01748.1| flagellar biosynthetic protein FliP [Syntrophothermus lipocalidus DSM 12680] Length = 259 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 97/249 (38%), Positives = 152/249 (61%), Gaps = 8/249 (3%) Query: 1 MIRYCFFALFLVTPELVFAKSSLH----DVMNIPADLSISTWIVRTFGIFTILSIAPILL 56 + + + +T E + + ++ + + ++ + TILS+AP +L Sbjct: 14 LAAFLIMVVVCLTGEAQAQQFQIPQVSINIGGESQGETGVSQALQILALLTILSLAPAIL 73 Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116 I++T F R I+V S +R+ + +PPN +++ LALF+TF+VM+PT E +QP Sbjct: 74 ILLTSFTRIIVVLSFVRSALATQQMPPNQILVGLALFLTFFVMAPTWKEVNEKALQPYFQ 133 Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176 +IT+ A R P FM TREKDL+LF+ MA T + +LIP+F Sbjct: 134 GEITQDQAFTRGMAPLRTFMFKQTREKDLALFVKMAKIQRPRTYG----DVPNYVLIPAF 189 Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236 +ISEL+ +FEIGF+I +PFL+IDM+V++ +M+MGM+MLPP ISLPFK++ FVL+DGW+L Sbjct: 190 VISELKTAFEIGFIIFVPFLVIDMVVSSALMSMGMLMLPPMMISLPFKILLFVLVDGWNL 249 Query: 237 LVENLVKSF 245 +V +L+ SF Sbjct: 250 VVNSLLMSF 258 >gi|15611692|ref|NP_223343.1| flagellar biosynthesis protein FliP [Helicobacter pylori J99] gi|4155178|gb|AAD06205.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99] Length = 248 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 103/227 (45%), Positives = 157/227 (69%), Gaps = 4/227 (1%) Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 A S++ +N P+D + + T+L +AP L++++T F R I+VFS LRT +G Sbjct: 23 ALPSVNLSLNAPSDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGT 82 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ PF FM Sbjct: 83 QQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSTLPFKEFMLK 142 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 NTREKDL+LF + + + T D + +LIP+FMISEL+ +F+IGFL+ LPFL+I Sbjct: 143 NTREKDLALFFRIRNLPNPKT----PDDVSLSVLIPAFMISELKTAFQIGFLLYLPFLVI 198 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 DM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENLV SF Sbjct: 199 DMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 245 >gi|299068762|emb|CBJ40002.1| fliP: flagellar biosynthesis protein. fliP/mopC/spaP family [Ralstonia solanacearum CMR15] Length = 249 Score = 202 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 99/229 (43%), Positives = 140/229 (61%), Gaps = 5/229 (2%) Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 A+ L + S S V+T T L P +L+M++ F R IIV S+LR + Sbjct: 24 AQAQPGLPLLTGTAGGQSYSL-PVQTLVFLTSLGFLPAILLMMSSFTRIIIVLSLLRHAL 82 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G + PPN V+I LALF+TF+VMSP LD+ PL +++I+ A+ A P FM Sbjct: 83 GTQTTPPNQVLIGLALFLTFFVMSPVLDKVYTDAYLPLRDSKISVEQALDTAATPLRQFM 142 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 TRE DL+LF M + I D + R LIP+F+ SEL+ SF+IGF I +PFL Sbjct: 143 LKQTREPDLALFAKMGNLP----PIASPDQVPMRALIPAFVTSELKTSFQIGFAIFIPFL 198 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +ID++VA ++M+MGMMM+ P+ SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 199 VIDIVVAAVLMSMGMMMVTPSIFSLPFKIMLFVLVDGWHLLLGSLAQSF 247 >gi|119775422|ref|YP_928162.1| flagellar biosynthesis protein FliP [Shewanella amazonensis SB2B] gi|119767922|gb|ABM00493.1| flagellar biosynthetic protein FliP [Shewanella amazonensis SB2B] Length = 249 Score = 202 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 89/245 (36%), Positives = 142/245 (57%), Gaps = 4/245 (1%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 M+ + + + V P + + ++ + T LS P ++IM+T Sbjct: 7 MLFWILAGMASLPAFGADGVLPAVTVTTTPDGGTQYSVTLQILMLMTALSFLPAMVIMLT 66 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R I+ S+LR +G+ P N V+I L+LFMTF++M+P D+ E G++P M + Sbjct: 67 SFTRIIVTLSLLRQAIGLQQAPSNQVLIGLSLFMTFFIMAPVFDKIYEQGVKPYMEETLP 126 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A +R EP FM + R DL F+++A +I + ++IP+F+ SE Sbjct: 127 IDQAFERGKEPLKAFMLSQVRITDLETFVNIAG----YDNIKSPEEAPMTVIIPAFITSE 182 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +F+IGF++ +PFL+ID++VA+I+MAMGMMML P +SLPFK++ FVL+DGWSL++ Sbjct: 183 LKTAFQIGFMLFVPFLVIDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVMGT 242 Query: 241 LVKSF 245 L SF Sbjct: 243 LANSF 247 >gi|15596643|ref|NP_250137.1| flagellar biosynthesis protein FliP [Pseudomonas aeruginosa PAO1] gi|107100880|ref|ZP_01364798.1| hypothetical protein PaerPA_01001910 [Pseudomonas aeruginosa PACS2] gi|116049391|ref|YP_791806.1| flagellar biosynthesis protein FliP [Pseudomonas aeruginosa UCBPP-PA14] gi|218892681|ref|YP_002441550.1| flagellar biosynthesis protein FliP [Pseudomonas aeruginosa LESB58] gi|254234545|ref|ZP_04927868.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa C3719] gi|254239796|ref|ZP_04933118.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa 2192] gi|296390187|ref|ZP_06879662.1| flagellar biosynthesis protein FliP [Pseudomonas aeruginosa PAb1] gi|313106445|ref|ZP_07792676.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa 39016] gi|12230927|sp|Q51468|FLIP_PSEAE RecName: Full=Flagellar biosynthetic protein fliP gi|9947397|gb|AAG04835.1|AE004574_6 flagellar biosynthetic protein FliP [Pseudomonas aeruginosa PAO1] gi|115584612|gb|ABJ10627.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa UCBPP-PA14] gi|126166476|gb|EAZ51987.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa C3719] gi|126193174|gb|EAZ57237.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa 2192] gi|218772909|emb|CAW28721.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa LESB58] gi|310879178|gb|EFQ37772.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa 39016] Length = 255 Score = 202 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 94/220 (42%), Positives = 138/220 (62%), Gaps = 4/220 (1%) Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85 V + ++ I T LS P ++++T F R IIVFSILR +G+ S P N Sbjct: 37 VTTNGQGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQ 96 Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145 V++ LALF+T +VM+P D+ +QP +N QI A+Q+ P FM TR DL Sbjct: 97 VLVGLALFLTMFVMAPVFDKINSQALQPYLNEQIPAQEALQKAEVPLKAFMLAQTRTSDL 156 Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205 LF+ ++ + TDI + IL+P+F+ SEL+ +F+IGF+I +PFLIID++V+++ Sbjct: 157 ELFVRLS----KRTDIGSPEATPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSV 212 Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MAMGMMML P ISLPFK++ FVL+DGW+L++ L SF Sbjct: 213 LMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLAGSF 252 >gi|323703181|ref|ZP_08114834.1| flagellar biosynthetic protein FliP [Desulfotomaculum nigrificans DSM 574] gi|323531840|gb|EGB21726.1| flagellar biosynthetic protein FliP [Desulfotomaculum nigrificans DSM 574] Length = 270 Score = 202 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 94/248 (37%), Positives = 150/248 (60%), Gaps = 10/248 (4%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTW------IVRTFGIFTILSIAPILLI 57 LF++ + + L + NI ++ ++ V+ ++L++ P LI Sbjct: 26 LILIPLFILMLPSGVSAAPLIPIPNINLNVETASQPQQVVDSVKLLIFLSLLAMVPAFLI 85 Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 M+T F R ++V S LR+ +G PPN V++ LALF+T ++MSP + IQP + N Sbjct: 86 MLTSFTRIVVVLSFLRSALGTQQTPPNQVLVGLALFLTIFIMSPVYKDMNKNAIQPYLAN 145 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177 Q+T A + +P FM TREKDL LF+ +A + + +L+P+F+ Sbjct: 146 QLTYEQAADKAIQPLKAFMARQTREKDLGLFISVAKMDKPK----NINEVPMSVLVPAFV 201 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 ISEL+ +F+IGF+I +PFL+IDM+VA+ +M+MGM MLPP +SLPFK++ FV++DGW L+ Sbjct: 202 ISELKTAFQIGFIIFVPFLVIDMVVASTLMSMGMFMLPPVMVSLPFKLLLFVMVDGWYLV 261 Query: 238 VENLVKSF 245 V++LV+SF Sbjct: 262 VKSLVESF 269 >gi|283853451|ref|ZP_06370695.1| flagellar biosynthetic protein FliP [Desulfovibrio sp. FW1012B] gi|283571171|gb|EFC19187.1| flagellar biosynthetic protein FliP [Desulfovibrio sp. FW1012B] Length = 262 Score = 202 bits (513), Expect = 5e-50, Method: Composition-based stats. Identities = 94/245 (38%), Positives = 144/245 (58%), Gaps = 7/245 (2%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI---VRTFGIFTILSIAPILLIMVT 60 L L A+ + +N+ A + + + T+LS+AP ++ VT Sbjct: 20 LVLAGLVLFVAGPALAQDAPTLSLNLAAGQNQPERVSTLLEILFALTVLSLAPSFILTVT 79 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R IIVFS LR MG+ VPP ++ SLA+F+T +M PT + + +QP + +I Sbjct: 80 SFTRIIIVFSFLRQAMGVPQVPPTQILASLAIFLTCVIMYPTGKQINDDALQPYLEERIG 139 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 T A+++ P F+ +TREKDLS+F + + +L FMISE Sbjct: 140 FTEALKKAEAPLREFLFKHTREKDLSVFYTVTKMERPKDKA----EVPTMMLAAGFMISE 195 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +F IGFLI +PFLI+DM++++I++AMGMMMLPP +I++PFK++ FVL+DGW+L+V + Sbjct: 196 LKTAFTIGFLIYIPFLILDMVISSILLAMGMMMLPPATIAMPFKLLLFVLVDGWALMVGS 255 Query: 241 LVKSF 245 LV SF Sbjct: 256 LVNSF 260 >gi|224370774|ref|YP_002604938.1| FliP [Desulfobacterium autotrophicum HRM2] gi|223693491|gb|ACN16774.1| FliP [Desulfobacterium autotrophicum HRM2] Length = 258 Score = 202 bits (513), Expect = 5e-50, Method: Composition-based stats. Identities = 93/242 (38%), Positives = 143/242 (59%), Gaps = 4/242 (1%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63 + L + F S + + ++ + TIL++AP +LI++T F Sbjct: 19 FLGLVLPSMVQGATFPIPSFNFGIGQAQGPEDVAVVLEIIALLTILALAPAILILMTPFT 78 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 R I+VF LR +G S PPN V++ LALF+TF+++ P + + P + QI Sbjct: 79 RIIVVFHFLRQAIGTQSSPPNQVVVGLALFLTFFIIKPVALDVYQNALNPYLERQIDYNE 138 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 A P F+ NTRE D++LF+ A + +T + + +LIP+++ISEL+ Sbjct: 139 AFTAAQVPIRNFLLVNTREADIALFVKGAGVAKPDT----REDVSLMLLIPAYVISELKT 194 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 +F IGF+I +PFL+IDM+VA++++AMGMMMLPP ISLPFK++ FVL+DGW LL +L+K Sbjct: 195 AFIIGFVIYVPFLVIDMVVASVLLAMGMMMLPPVMISLPFKLMLFVLVDGWHLLTGSLLK 254 Query: 244 SF 245 SF Sbjct: 255 SF 256 >gi|83747643|ref|ZP_00944679.1| FliP [Ralstonia solanacearum UW551] gi|207739724|ref|YP_002258117.1| flagellar biosynthetic protein flip [Ralstonia solanacearum IPO1609] gi|83725695|gb|EAP72837.1| FliP [Ralstonia solanacearum UW551] gi|206593106|emb|CAQ60012.1| flagellar biosynthetic protein flip [Ralstonia solanacearum IPO1609] Length = 249 Score = 202 bits (513), Expect = 5e-50, Method: Composition-based stats. Identities = 99/229 (43%), Positives = 140/229 (61%), Gaps = 5/229 (2%) Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 A+ L + S S V+T T L P +L+M++ F R IIV S+LR + Sbjct: 24 AQAQPGLPLLTGAAGGQSYSL-PVQTLVFLTSLGFLPAILLMMSSFTRIIIVLSLLRHAL 82 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G + PPN V+I LALF+TF+VMSP LD+ PL +++I+ A+ A P FM Sbjct: 83 GTQTTPPNQVLIGLALFLTFFVMSPVLDKVYTDAYVPLRDSKISVEQALDTAATPLRQFM 142 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 TRE DL+LF M + I D + R LIP+F+ SEL+ SF+IGF I +PFL Sbjct: 143 LKQTREPDLALFAKMGNLP----PIASPDQVPMRALIPAFVTSELKTSFQIGFAIFIPFL 198 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +ID++VA ++M+MGMMM+ P+ SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 199 VIDIVVAAVLMSMGMMMVTPSIFSLPFKIMLFVLVDGWHLLLGSLAQSF 247 >gi|308182827|ref|YP_003926954.1| flagellar biosynthesis protein FliP [Helicobacter pylori PeCan4] gi|308065012|gb|ADO06904.1| flagellar biosynthesis protein FliP [Helicobacter pylori PeCan4] Length = 248 Score = 202 bits (513), Expect = 5e-50, Method: Composition-based stats. Identities = 104/227 (45%), Positives = 158/227 (69%), Gaps = 4/227 (1%) Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 A S++ +N P+D + + T+L +AP L++++T F R I+VFS LRT +G Sbjct: 23 ALPSVNLSLNAPSDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGT 82 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ A PF FM Sbjct: 83 QQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLK 142 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 NTREKDL+LF + + + T D + +LIP+FMISEL+ +F+IGFL+ LPFL+I Sbjct: 143 NTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVI 198 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 DM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENLV SF Sbjct: 199 DMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 245 >gi|317010902|gb|ADU84649.1| flagellar biosynthesis protein FliP [Helicobacter pylori SouthAfrica7] Length = 248 Score = 202 bits (513), Expect = 5e-50, Method: Composition-based stats. Identities = 107/242 (44%), Positives = 161/242 (66%), Gaps = 4/242 (1%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63 + FAL A S++ +N P D + + T+L +AP L++++T F Sbjct: 8 FLIFALIGPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFI 67 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 R I+VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T Sbjct: 68 RLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTE 127 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 A ++ A PF FM NTREKDL+LF + + + T D + +LIP+FMISEL+ Sbjct: 128 AFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKT----PDDVSLSVLIPAFMISELKT 183 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENLV Sbjct: 184 AFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVA 243 Query: 244 SF 245 SF Sbjct: 244 SF 245 >gi|160939626|ref|ZP_02086974.1| hypothetical protein CLOBOL_04518 [Clostridium bolteae ATCC BAA-613] gi|158437417|gb|EDP15181.1| hypothetical protein CLOBOL_04518 [Clostridium bolteae ATCC BAA-613] Length = 258 Score = 202 bits (513), Expect = 5e-50, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 143/247 (57%), Gaps = 2/247 (0%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 +I FA + + + + + ++ +F L++ P L+IM+T Sbjct: 11 IIGAGTFAWMWAPGAVTSYATDVSLTLQGSSGTGKPMDMLDIMFLFLFLAVVPSLIIMMT 70 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R +IV S LR +G PPN +++ LALF+T ++MSP + QP QIT Sbjct: 71 SFTRIVIVLSFLRNALGTQQSPPNQILVGLALFLTLFIMSPVIASVNTQAYQPYREGQIT 130 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND--HIEYRILIPSFMI 178 A +R EP FM T +K L LF+ ++ + + + + ++PSF++ Sbjct: 131 REQAFERAQEPMKEFMLKQTEKKSLDLFLSISKAQPPDISQGQEGYMKLGLTTIVPSFIL 190 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL ++F +GFLI +PFLIID++V++ +M+MGM+MLPPT I+LPFK++ FVL+DGWSL++ Sbjct: 191 SELNKAFTMGFLIFIPFLIIDLVVSSTLMSMGMVMLPPTMIALPFKIMMFVLVDGWSLVI 250 Query: 239 ENLVKSF 245 + LV+SF Sbjct: 251 KTLVQSF 257 >gi|194014385|ref|ZP_03053002.1| flagellar biosynthetic protein FliP [Bacillus pumilus ATCC 7061] gi|194013411|gb|EDW22976.1| flagellar biosynthetic protein FliP [Bacillus pumilus ATCC 7061] Length = 221 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 100/221 (45%), Positives = 149/221 (67%), Gaps = 5/221 (2%) Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84 D+ N +IST VR + T+ S+AP +LI++TCF R +IV S +RT + S+PPN Sbjct: 6 DLFNSSGAGNIST-SVRLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATNSMPPN 64 Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144 V++ LALF+TF++M+PT + + PL+N+ IT A ++ P FM +TR+KD Sbjct: 65 QVLVGLALFLTFFIMAPTFSEINKEALTPLLNDDITLNQAYEKAEVPIKEFMSKHTRQKD 124 Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204 L+LF+ A I ++P+F ISEL+ +F+IGF+I +PFLIIDM+VA+ Sbjct: 125 LALFLSYAKIDTPE----SIKDIPLTAMVPAFAISELKTAFQIGFMIFIPFLIIDMVVAS 180 Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++M+MGMMMLPP ISLPFK++ FVL+DGW L+V++L++SF Sbjct: 181 VLMSMGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLLQSF 221 >gi|313673292|ref|YP_004051403.1| flagellar biosynthetic protein flip [Calditerrivibrio nitroreducens DSM 19672] gi|312940048|gb|ADR19240.1| flagellar biosynthetic protein FliP [Calditerrivibrio nitroreducens DSM 19672] Length = 244 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 99/208 (47%), Positives = 144/208 (69%), Gaps = 4/208 (1%) Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98 ++ + TILSIAP +LIM+T F R IIVFS LR+ MG PPN V+I LALF+TF++ Sbjct: 41 TLQIIFLITILSIAPAILIMMTSFTRIIIVFSFLRSAMGTQQTPPNQVLIGLALFLTFFI 100 Query: 99 MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 MSP + + P ++ +I T A++ +P FM NTR+KD+ F+ ++ S Sbjct: 101 MSPVFSEMNKNALAPYLDGKIAFTDALKEAKKPLRKFMLENTRKKDIMTFLQVSKSPMPK 160 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 T D I +L+P+F+ SEL+ +FEIGFL+ LPFLIID +V++++++MGMMMLPP Sbjct: 161 T----VDDIPDMVLLPAFVTSELQTAFEIGFLLFLPFLIIDFVVSSVLLSMGMMMLPPVM 216 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSFI 246 IS+PFK++ FVL+DGW+L+V +LVKSF+ Sbjct: 217 ISMPFKILLFVLVDGWNLIVMSLVKSFM 244 >gi|295399824|ref|ZP_06809805.1| flagellar biosynthetic protein FliP [Geobacillus thermoglucosidasius C56-YS93] gi|312111664|ref|YP_003989980.1| flagellar biosynthetic protein FliP [Geobacillus sp. Y4.1MC1] gi|294978227|gb|EFG53824.1| flagellar biosynthetic protein FliP [Geobacillus thermoglucosidasius C56-YS93] gi|311216765|gb|ADP75369.1| flagellar biosynthetic protein FliP [Geobacillus sp. Y4.1MC1] Length = 222 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 92/195 (47%), Positives = 137/195 (70%), Gaps = 4/195 (2%) Query: 51 IAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMG 110 IAP +LIM+TCF R IIV S +RT +G +PPN V+I LA+F+TF++M+PT + Sbjct: 31 IAPGILIMMTCFTRIIIVLSFVRTSLGTQQMPPNQVLIGLAMFLTFFIMAPTFKEINDQA 90 Query: 111 IQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYR 170 +QPL + +I A +R + P FM +TR+KDL+LF+ + + T I Sbjct: 91 LQPLFSEKINLEQAYERASVPIKEFMSKHTRQKDLALFLSYSGAEKPKT----VQDIPLS 146 Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230 L+P+F ISE++ +F++G +I +PFL+IDMIVA+++M+MGMMMLPP ISLPFK++ FVL Sbjct: 147 TLVPAFAISEIKTAFQMGVMIFIPFLVIDMIVASVLMSMGMMMLPPVMISLPFKILLFVL 206 Query: 231 IDGWSLLVENLVKSF 245 +DGW L+V++L++SF Sbjct: 207 VDGWYLVVKSLLESF 221 >gi|148553144|ref|YP_001260726.1| flagellar biosynthesis protein FliP [Sphingomonas wittichii RW1] gi|148498334|gb|ABQ66588.1| flagellar biosynthetic protein FliP [Sphingomonas wittichii RW1] Length = 278 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 89/236 (37%), Positives = 140/236 (59%), Gaps = 4/236 (1%) Query: 10 FLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVF 69 T + + I D + ++ + ++L++ P L++M++ F R IIV Sbjct: 45 LASTAGPAQTGALDRAMTTIAGDGRPLSLSLQILVLMSLLTVLPSLVLMMSSFTRIIIVL 104 Query: 70 SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129 S+LR +G+ PPN V++ LA+F++ +VM P++D+ +P QIT AI R Sbjct: 105 SLLRQALGLQQTPPNQVLVGLAMFLSLFVMRPSIDQINADAFKPYGAGQITIEEAITRSG 164 Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189 FM TR+ DL LF D+A + + I + IL+P+F+ SEL+ +F+IGF Sbjct: 165 AVLHRFMVLQTRQTDLKLFADLAKAPK----FARPADIPFSILLPAFVTSELKTAFQIGF 220 Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LI LPFLIID++VA+ +M++GMMML P IS+PFK++ FVL+DGW+L + +L SF Sbjct: 221 LIFLPFLIIDLVVASTLMSLGMMMLSPAIISMPFKLLLFVLVDGWALTMGSLAASF 276 >gi|24052334|gb|AAN43540.1| flagellar biosynthesis [Shigella flexneri 2a str. 301] gi|313650170|gb|EFS14583.1| flagellar biosynthetic protein FliP [Shigella flexneri 2a str. 2457T] gi|332757282|gb|EGJ87619.1| flagellar biosynthetic protein FliP [Shigella flexneri 2747-71] gi|332757514|gb|EGJ87849.1| flagellar biosynthetic protein FliP [Shigella flexneri K-671] gi|332766686|gb|EGJ96890.1| flagellar biosynthetic protein FliP [Shigella flexneri 2930-71] gi|333017554|gb|EGK36866.1| flagellar biosynthetic protein FliP [Shigella flexneri K-304] Length = 204 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 91/206 (44%), Positives = 141/206 (68%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++T T L+ P +L+M+T F R IIVF +LR +G S PPN V++ LALF+TF++M Sbjct: 1 MQTLVFITSLTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIM 60 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP +D+ QP +I+ A+++ A+P FM TRE DL LF +A++ Sbjct: 61 SPVIDKIYVDAYQPFSEEKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTG---- 116 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + RIL+P+++ SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I Sbjct: 117 PLQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATI 176 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 +LPFK++ FVL+DGW LLV +L +SF Sbjct: 177 ALPFKLMLFVLVDGWQLLVGSLAQSF 202 >gi|153828653|ref|ZP_01981320.1| flagellar biosynthetic protein FliP [Vibrio cholerae 623-39] gi|148875924|gb|EDL74059.1| flagellar biosynthetic protein FliP [Vibrio cholerae 623-39] Length = 299 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 89/206 (43%), Positives = 135/206 (65%), Gaps = 5/206 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + T+L P ++I++T F R ++V SILR MG+ P N VII +ALF+TF++M Sbjct: 97 LQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFIM 156 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +P ++ E +QP +N QIT A EP FM TR DL F++M+ Sbjct: 157 APVFNQINEQAVQPYLNEQITALQAFDLAQEPLKAFMLKQTRVNDLETFVEMSG-----A 211 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGMMML P + Sbjct: 212 QVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGMMMLSPMIV 271 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW+L++ L SF Sbjct: 272 SLPFKLMLFVLVDGWNLILSTLAGSF 297 >gi|152979946|ref|YP_001353121.1| flagellar biosynthesis protein FliP [Janthinobacterium sp. Marseille] gi|151280023|gb|ABR88433.1| Flip component of flagellar biosynthesis pathway [Janthinobacterium sp. Marseille] Length = 252 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 92/233 (39%), Positives = 143/233 (61%), Gaps = 6/233 (2%) Query: 15 ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIA--PILLIMVTCFPRFIIVFSIL 72 + ++ L + PA T+ + + + ++ P +L+M+T F R IIV S+L Sbjct: 23 AAMAQQAGLPAFTSSPAPGGGQTYSLSLQTLLLLTGLSFLPAVLLMMTSFTRIIIVLSLL 82 Query: 73 RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132 R +G S PPN VII L+LF+T +VMSP LD+ QP N+I A+ + P Sbjct: 83 RQALGTQSSPPNQVIIGLSLFLTLFVMSPVLDKIYVDAYQPFSQNKIQMQEALDKAVAPL 142 Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192 FM TRE DL+L++ ++ ++ + I RIL+P+F+ SEL+ +F+I F I Sbjct: 143 KTFMIKQTRESDLALYVKLSKGP----ELQGPEDIPLRILVPAFVTSELKTAFQISFAIF 198 Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PFLIIDM+VA+++M+MGMMM+ P ++LPFK++ FVL+DGW LL+ +L +SF Sbjct: 199 IPFLIIDMVVASVLMSMGMMMVSPAIVALPFKLMLFVLVDGWQLLIGSLAQSF 251 >gi|300696945|ref|YP_003747606.1| fliP: flagellar biosynthesis protein. fliP/mopC/spaP family [Ralstonia solanacearum CFBP2957] gi|299073669|emb|CBJ53189.1| fliP: flagellar biosynthesis protein. fliP/mopC/spaP family [Ralstonia solanacearum CFBP2957] Length = 249 Score = 201 bits (512), Expect = 7e-50, Method: Composition-based stats. Identities = 99/229 (43%), Positives = 140/229 (61%), Gaps = 5/229 (2%) Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 A+ L + S S V+T T L P +L+M++ F R IIV S+LR + Sbjct: 24 AQAQPGLPLLTGAAGGQSYSL-PVQTLVFLTSLGFLPAILLMMSSFTRIIIVLSLLRHAL 82 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G + PPN V+I LALF+TF+VMSP LD+ PL +++I+ A+ A P FM Sbjct: 83 GTQTTPPNQVLIGLALFLTFFVMSPVLDKVYTDAYVPLRDSKISVEQALDTAATPLRQFM 142 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 TRE DL+LF M + I D + R LIP+F+ SEL+ SF+IGF I +PFL Sbjct: 143 LKQTREPDLALFAKMGNLP----PIASPDQVPMRALIPAFVTSELKTSFQIGFAIFIPFL 198 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +ID++VA ++M+MGMMM+ P+ SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 199 VIDIVVAAVLMSMGMMMVTPSIFSLPFKIMLFVLVDGWHLLLGSLAQSF 247 >gi|15606937|ref|NP_214318.1| flagellar biosynthesis protein FliP [Aquifex aeolicus VF5] gi|6225367|sp|O67750|FLIP_AQUAE RecName: Full=Flagellar biosynthetic protein fliP gi|2984179|gb|AAC07711.1| flagellar biosynthetic protein FliP [Aquifex aeolicus VF5] Length = 239 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 89/239 (37%), Positives = 149/239 (62%), Gaps = 5/239 (2%) Query: 7 FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66 + +++ VF++ + + +R TILS+ P +LIM T F R + Sbjct: 5 LTILILSAGFVFSQIPP---IELKVGEGNLVDSIRLLIFLTILSLVPSILIMFTSFTRLV 61 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 +V S+LR +G PPN VII+L+LF+TF++M PT+D+ +QP + +I++ + Sbjct: 62 VVLSLLRQAIGTPQAPPNQVIIALSLFLTFFIMKPTIDKINSEALQPYIREEISDEEFFK 121 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 RV FM +TR++ L F+ +A + + I R++IP+FM+SEL+ +FE Sbjct: 122 RVEFYAKDFMLKHTRKETLEAFLSIAKI--PKDSVKEPHEIPLRVVIPAFMVSELKTAFE 179 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 I FL+ +PFLI+D++VA+I+++MG++M+PP ISLPFK++ FVL +GW L+V +LV+S+ Sbjct: 180 IVFLLYIPFLIVDLVVASILISMGIIMIPPQLISLPFKIMLFVLANGWELVVLSLVRSY 238 >gi|89899371|ref|YP_521842.1| flagellar biosynthesis protein FliP [Rhodoferax ferrireducens T118] gi|89344108|gb|ABD68311.1| flagellar biosynthetic protein FliP [Rhodoferax ferrireducens T118] Length = 260 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 145/245 (59%), Gaps = 4/245 (1%) Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61 + A+ + L + L +M + ++T FT LS P +L+M+T Sbjct: 19 VAVVLLAILTQSAALAQSAGQLPLLMGSGPSGVSFSVPIQTLLFFTALSFLPAVLLMMTG 78 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F R +IV S++R +G S PPN VI+ L+LF+TF VM PTLD+ P N+ + Sbjct: 79 FTRIVIVLSLMRQALGTQSAPPNQVIVGLSLFLTFLVMGPTLDKVYSEAYLPYTNSGMPF 138 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 A+ + +P FM TR+ DL+LF +A T + R+L+P+F+ SEL Sbjct: 139 EQALAKAEDPLRQFMSKQTRQSDLALFAKLAKLEPGAT----AQTVPMRVLVPAFVTSEL 194 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 + +F+IGF+I +PFL+ID++VA+++M++GMMML P ++LPFK++ FVL DGW+LL+ +L Sbjct: 195 KSAFQIGFMIFIPFLVIDIVVASVLMSLGMMMLSPVLVALPFKLMLFVLADGWNLLIGSL 254 Query: 242 VKSFI 246 SF+ Sbjct: 255 AASFV 259 >gi|71906402|ref|YP_283989.1| flagellar biosynthesis protein FliP [Dechloromonas aromatica RCB] gi|71846023|gb|AAZ45519.1| Flagellar transport protein FliP [Dechloromonas aromatica RCB] Length = 248 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 96/229 (41%), Positives = 148/229 (64%), Gaps = 6/229 (2%) Query: 19 AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 A L V + PA +T+ ++T + T L+ P +++M+T F R +IV S+LR + Sbjct: 22 AAGGLPAVTSTPAAGGGTTYSLTIQTLLLMTALTFIPAIVLMMTGFTRIVIVLSLLRHAL 81 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G + PPN V++ L+LF+TF+VMSP L++ PL N+I A +R A P FM Sbjct: 82 GTQTAPPNQVVVGLSLFLTFFVMSPVLEKVYTDAYVPLSENKINIMQAGERAAIPMRSFM 141 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 TRE DL+LF +A I + RIL+P+F+ISEL+ +F+IGF++ +PFL Sbjct: 142 LKQTRESDLALFAGIAKIDK----IETPEDTPLRILVPAFVISELKTAFQIGFILFIPFL 197 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +IDM+VA+++M+MGMMM+ P ++LPFK++ FVL+DGW L++ +LV+SF Sbjct: 198 VIDMVVASLLMSMGMMMMSPVMVALPFKLMLFVLVDGWHLVIGSLVQSF 246 >gi|77457776|ref|YP_347281.1| flagellar biosynthesis protein FliP [Pseudomonas fluorescens Pf0-1] gi|77381779|gb|ABA73292.1| flagellar biosynthesis protein [Pseudomonas fluorescens Pf0-1] Length = 252 Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats. Identities = 90/220 (40%), Positives = 136/220 (61%), Gaps = 4/220 (1%) Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85 + + ++ I T LS P +I++T F R IIVFSILR +G+ P N Sbjct: 32 LGTNAEGAQEYSVSLQILLIMTALSFIPAAVILMTSFTRIIIVFSILRQALGLQQTPSNQ 91 Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145 ++ +ALF+T ++M+P DR +QP + ++T A+++ P FM TR DL Sbjct: 92 ILTGMALFLTLFIMAPVFDRVNNDALQPYLAEKLTAQQAVEKAQVPIKDFMLAQTRSSDL 151 Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205 LF+ ++ + TDI D IL+P+F+ SEL+ +F+IGF+I +PFLIID++VA++ Sbjct: 152 ELFVRLS----KRTDIATPDAAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASV 207 Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MAMGMMML P ISLPFK++ FVL+DGW+L++ L SF Sbjct: 208 LMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLASSF 247 >gi|157961199|ref|YP_001501233.1| flagellar biosynthesis protein FliP [Shewanella pealeana ATCC 700345] gi|157846199|gb|ABV86698.1| flagellar biosynthetic protein FliP [Shewanella pealeana ATCC 700345] Length = 249 Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 143/247 (57%), Gaps = 7/247 (2%) Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTW---IVRTFGIFTILSIAPILLIM 58 I + FA++ + + + ST ++ + T LS P ++IM Sbjct: 5 ILVIVGLTLCLAAPAAFAENGILPAVTVSTGADGSTQYSVTMQILLLMTALSFIPAMVIM 64 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R I+V SILR +G+ P N V+I +++FMTF++MSP D+ + +QP + Sbjct: 65 LTSFTRIIVVLSILRQAIGLQQTPSNQVLIGISMFMTFFIMSPVFDKIYDQAVQPYIEQG 124 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 + A + P FM TR DL F++++ +I + + ++IP+F+ Sbjct: 125 MPLQDAFTKGQGPLKDFMLAQTRLTDLDTFIEISG----YQNINEPEDAPMTVIIPAFIT 180 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK++ FVL+DGWSL++ Sbjct: 181 SELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVM 240 Query: 239 ENLVKSF 245 L SF Sbjct: 241 GTLANSF 247 >gi|317014102|gb|ADU81538.1| flagellar biosynthesis protein FliP [Helicobacter pylori Gambia94/24] Length = 248 Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats. Identities = 103/224 (45%), Positives = 157/224 (70%), Gaps = 4/224 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 S++ +N P+D + + T+L +AP L++++T F R I+VFS LRT +G Sbjct: 26 SVNLSLNAPSDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQT 85 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ A PF FM NTR Sbjct: 86 PPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKKFMLKNTR 145 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 EKDL+LF + + + T D + +LIP+FMISEL+ +F+IGFL+ LPFL+IDM+ Sbjct: 146 EKDLALFFRIRNLPNPKT----PDDVSLSVLIPAFMISELKTAFQIGFLLYLPFLVIDMV 201 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENLV SF Sbjct: 202 ISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 245 >gi|157692315|ref|YP_001486777.1| flagellar biosynthesis protein FliP [Bacillus pumilus SAFR-032] gi|157681073|gb|ABV62217.1| flagellar biosynthesis protein FliP [Bacillus pumilus SAFR-032] Length = 221 Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats. Identities = 100/221 (45%), Positives = 149/221 (67%), Gaps = 5/221 (2%) Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84 D+ N +IST VR + T+ S+AP +LI++TCF R +IV S +RT + S+PPN Sbjct: 6 DLFNSSGAGNIST-SVRLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATNSMPPN 64 Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144 V++ LALF+TF++M+PT + + PL+N+ IT A ++ P FM +TR+KD Sbjct: 65 QVLVGLALFLTFFIMAPTFSEINKEALTPLLNDDITLNQAYEKAEVPIKEFMSKHTRQKD 124 Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204 L+LF+ A I ++P+F ISEL+ +F+IGF+I +PFLIIDM+VA+ Sbjct: 125 LALFLSYAKMDTPE----SIKDIPLTAMVPAFAISELKTAFQIGFMIFIPFLIIDMVVAS 180 Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++M+MGMMMLPP ISLPFK++ FVL+DGW L+V++L++SF Sbjct: 181 VLMSMGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLLQSF 221 >gi|51246523|ref|YP_066407.1| flagellar biosynthesis protein FliP [Desulfotalea psychrophila LSv54] gi|50877560|emb|CAG37400.1| probable flagellar biosynthetic protein (FliP) [Desulfotalea psychrophila LSv54] Length = 260 Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats. Identities = 84/232 (36%), Positives = 143/232 (61%), Gaps = 4/232 (1%) Query: 14 PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73 P ++ + + ++ + TI+S+AP +++M+TCF R +IV +R Sbjct: 32 PSWAVGLPNITLGLEDADSPEKVSAALQILFVLTIISVAPAIVLMMTCFTRIVIVLGFVR 91 Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133 MG ++PPN ++I ALF+TF++MSPT+++ + +QP + +I++ A+ Sbjct: 92 QAMGTQNMPPNQIVIGFALFLTFFIMSPTINKINDTALQPYLAKEISQGKALDLTVFSMR 151 Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193 FM + +E +LS ++ I LIP++M+SEL+ +F +GF++ + Sbjct: 152 EFMFSQVQESELSFMAELTIEKEPKDKA----DIPTTTLIPAYMLSELKTAFSMGFMVYI 207 Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 PFL+IDMIVA+++M+MGMMMLPP IS+PFK++ F+L+DGW+L+V +LVKSF Sbjct: 208 PFLVIDMIVASVLMSMGMMMLPPVIISMPFKLLLFILVDGWTLIVGSLVKSF 259 >gi|317180434|dbj|BAJ58220.1| flagellar biosynthesis protein FliP [Helicobacter pylori F32] Length = 248 Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats. Identities = 104/227 (45%), Positives = 156/227 (68%), Gaps = 4/227 (1%) Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 A S++ +N P D + + T+L +AP L++++T F R I+VFS LRT +G Sbjct: 23 ALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGT 82 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 PP +++SL+L +TF++M P+L ++ + GI+P M+ I+ T A ++ A PF FM Sbjct: 83 QQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKTISYTEAFEKSALPFKEFMLK 142 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 NTREKDL+LF + + + T D + +LIP+FMISEL+ +F+IGFL+ LPFL+I Sbjct: 143 NTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVI 198 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 DM++++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENLV SF Sbjct: 199 DMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 245 >gi|152965632|ref|YP_001361416.1| flagellar biosynthesis protein FliP [Kineococcus radiotolerans SRS30216] gi|151360149|gb|ABS03152.1| flagellar biosynthetic protein FliP [Kineococcus radiotolerans SRS30216] Length = 287 Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats. Identities = 83/209 (39%), Positives = 129/209 (61%), Gaps = 4/209 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + + TILS+AP LL++ TCF + +IV + R +G+ PPN V+ LALF+T Sbjct: 81 SQSITVIIALTILSVAPALLLLTTCFTKILIVLGLTRNALGLQGTPPNQVLAGLALFLTM 140 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 +VM+PT + +QP + + T T A ++P FM TR ++L+L A Sbjct: 141 FVMAPTFGAINDTAVQPYLKGEKTATVAFTDGSQPLKEFMLKQTRPEELALMTKAAKRDL 200 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 T + L+P+F +SELR +F IGF+I +PFL+ID++V+ +M++GMMMLPP Sbjct: 201 PAT----REETPLTTLVPAFALSELRSAFIIGFVIFIPFLVIDIVVSGALMSLGMMMLPP 256 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++SLPFK++ FV+IDGW L+++ LV S+ Sbjct: 257 VTVSLPFKLLLFVMIDGWGLIIKALVSSY 285 >gi|239628946|ref|ZP_04671977.1| flagellar biosynthesis protein FliP [Clostridiales bacterium 1_7_47_FAA] gi|239519092|gb|EEQ58958.1| flagellar biosynthesis protein FliP [Clostridiales bacterium 1_7_47FAA] Length = 255 Score = 201 bits (511), Expect = 9e-50, Method: Composition-based stats. Identities = 88/242 (36%), Positives = 140/242 (57%), Gaps = 2/242 (0%) Query: 6 FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65 FAL + + + + + ++ +F L++ P L+IM+T F R Sbjct: 13 VFALTWAGSAMTAYATDVSVTLQGSSGAGKPMDMLDIMFLFLFLAVVPSLIIMMTSFTRI 72 Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 +IV S LR +G PPN +++ LALF+T ++M+P QP + IT A Sbjct: 73 VIVLSFLRNALGTQQSPPNQILVGLALFLTLFIMAPVFTSVNVQAYQPYKSGTITREEAF 132 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND--HIEYRILIPSFMISELRR 183 R EP FM T +K L LF+ ++ + +T + ++PSF++SEL + Sbjct: 133 DRAQEPMKEFMLKQTEKKSLDLFLSISKTDPPDTSKGPEGYMELGLTTIVPSFILSELNK 192 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 +F +GFLI +PFLIID++V++ +M+MGM+MLPPT I+LPFK++ FVL+DGWSL+++ LV+ Sbjct: 193 AFTMGFLIFIPFLIIDLVVSSTLMSMGMVMLPPTMIALPFKIMMFVLVDGWSLVIKTLVQ 252 Query: 244 SF 245 SF Sbjct: 253 SF 254 >gi|220929452|ref|YP_002506361.1| flagellar biosynthesis protein FliP [Clostridium cellulolyticum H10] gi|219999780|gb|ACL76381.1| flagellar biosynthetic protein FliP [Clostridium cellulolyticum H10] Length = 266 Score = 201 bits (511), Expect = 9e-50, Method: Composition-based stats. Identities = 98/254 (38%), Positives = 146/254 (57%), Gaps = 10/254 (3%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDV-----MNIPADLSISTWIVRTFGIFTILSIAPIL 55 M +F + A+ ++ + +D + ++ T+L+IAP + Sbjct: 12 MFTAILTVIFCLMGGQALAEPTVSVTRDGINIGASSDPKEVSSSIQLLIALTVLAIAPSI 71 Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115 LIM+T F R II+ S LR +G +PPN V+I LALF+T +VMSP L E QP Sbjct: 72 LIMMTGFTRIIIILSFLRNALGTQQMPPNQVLIGLALFITLFVMSPVLSDINENAFQPYS 131 Query: 116 NNQITETTAIQRVAEPFWVFMRNNT----REKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 + +IT+ AI + ++ +M REKDL LFM + + + I Sbjct: 132 DGKITQQQAIDKSSQTIKTWMVKQIFSNNREKDLELFMTLGGQKDP-IRVQDASKLSLTI 190 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 + P+F+ISEL +F+ GFLI LPFLIIDM+V++ +M+MGMMMLPP ISLPFK++ FVL+ Sbjct: 191 VAPAFLISELTIAFKFGFLIFLPFLIIDMVVSSALMSMGMMMLPPIMISLPFKILLFVLV 250 Query: 232 DGWSLLVENLVKSF 245 DGWS+L ++++ SF Sbjct: 251 DGWSMLTQSIITSF 264 >gi|294140213|ref|YP_003556191.1| flagellar biosynthetic protein FliP [Shewanella violacea DSS12] gi|293326682|dbj|BAJ01413.1| flagellar biosynthetic protein FliP [Shewanella violacea DSS12] Length = 248 Score = 201 bits (511), Expect = 9e-50, Method: Composition-based stats. Identities = 84/220 (38%), Positives = 136/220 (61%), Gaps = 4/220 (1%) Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85 V P + + ++ + T +S P ++IM+T F R I+V SILR +G+ P N Sbjct: 31 VTTTPDGGTQYSVTMQILLLMTAMSFLPAMIIMLTSFTRIIVVLSILRQAIGLQQTPSNQ 90 Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145 V+I +++FMTF++M+P D+ + ++P + + A EP FM TR DL Sbjct: 91 VLIGISMFMTFFIMAPVFDKIYDEAVKPYIAETMDIEQAFNIGKEPIKTFMLAQTRLTDL 150 Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205 F++++ +I + + +LIPSF+ SEL+ +F+IGF++ +PFL++D++VA+I Sbjct: 151 DTFIEISG----YQNIDSPEDVPMSVLIPSFITSELKTAFQIGFMLFVPFLVLDLVVASI 206 Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MAMGMMML P +SLPFK++ FVL+DGWSL++ L SF Sbjct: 207 LMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVMGTLANSF 246 >gi|319649551|ref|ZP_08003707.1| flagellar biosynthesis protein P [Bacillus sp. 2_A_57_CT2] gi|317398713|gb|EFV79395.1| flagellar biosynthesis protein P [Bacillus sp. 2_A_57_CT2] Length = 221 Score = 200 bits (510), Expect = 9e-50, Method: Composition-based stats. Identities = 95/209 (45%), Positives = 148/209 (70%), Gaps = 4/209 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + V+ F + T+LS+AP +LI++TCF R IIV S +RT + +PPN V+I L+LF+TF Sbjct: 17 STSVKLFLLLTVLSLAPSILILMTCFTRIIIVLSFVRTALATQQMPPNQVLIGLSLFLTF 76 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 ++M+PT+ E + PL N +I A ++ + PF FM +TR+KDL+LF+ + + Sbjct: 77 FIMAPTMQEVNEQALTPLFNEEINLEEAYEKASIPFKEFMSAHTRQKDLALFLQYSGAEA 136 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 + + I L+P+F ISE++ +F+IGF+I +PFL+IDM+VA+++M+MGMMMLPP Sbjct: 137 P----SSIEDIPLTSLVPAFAISEIKTAFQIGFMIFIPFLVIDMVVASVLMSMGMMMLPP 192 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLPFK++ FVL+DGW L+V++L++SF Sbjct: 193 VMISLPFKILLFVLVDGWYLVVKSLLQSF 221 >gi|89098628|ref|ZP_01171510.1| flagellar biosynthesis protein P [Bacillus sp. NRRL B-14911] gi|89086590|gb|EAR65709.1| flagellar biosynthesis protein P [Bacillus sp. NRRL B-14911] Length = 221 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 94/209 (44%), Positives = 146/209 (69%), Gaps = 4/209 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + V+ + T+LS+AP +LI++TCF R IIV S +RT + +PPN V++ L+LF+TF Sbjct: 17 STSVKMLLLLTVLSLAPSILILMTCFTRIIIVLSFVRTALATQQMPPNQVLVGLSLFLTF 76 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 ++M+PT E + PL N++I A ++ + PF FM +TR+KDL+LF++ + + Sbjct: 77 FIMAPTFQEVNEQALTPLFNDEINLEQAYEKASVPFKDFMSAHTRQKDLALFLEYSGAET 136 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 I L+P+F ISE++ +F+IGF+I +PFL+IDMIVA+++M+MGMMMLPP Sbjct: 137 PE----SIQDIPLTALVPAFAISEIKTAFQIGFMIFIPFLVIDMIVASVLMSMGMMMLPP 192 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLPFK++ FVL+DGW L+V++L++SF Sbjct: 193 VMISLPFKILLFVLVDGWYLVVKSLLQSF 221 >gi|229591840|ref|YP_002873959.1| flagellar biosynthesis protein FliP [Pseudomonas fluorescens SBW25] gi|229363706|emb|CAY51090.1| flagellar biosynthesis [Pseudomonas fluorescens SBW25] Length = 247 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 91/220 (41%), Positives = 138/220 (62%), Gaps = 4/220 (1%) Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85 + A + ++ I T LS P ++++T F R IIVFSILR +G+ P N Sbjct: 29 LGTNAAGAQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQ 88 Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145 ++ +ALF+T ++M+P D+ + +QP + ++T AI + P FM + TR DL Sbjct: 89 ILTGMALFLTLFIMAPVFDKVNQQALQPYLAEKMTAQDAIDKAQGPIKDFMLSQTRSSDL 148 Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205 LFM ++ + TDI D IL+P+F+ SEL+ +F+IGF+I +PFLIID++VA++ Sbjct: 149 ELFMRLS----KRTDIATPDQAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASV 204 Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MAMGMMML P ISLPFK++ FVL+DGW+L++ L SF Sbjct: 205 LMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLASSF 244 >gi|213612735|ref|ZP_03370561.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 206 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 93/207 (44%), Positives = 141/207 (68%), Gaps = 4/207 (1%) Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98 V+T T L+ P +L+M+T F R IIVF +LR +G S PPN V++ LALF+TF++ Sbjct: 2 SVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFI 61 Query: 99 MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 MSP +D+ QP +I+ A+ + A+P FM TRE DL+LF +A+S Sbjct: 62 MSPVIDKIYVDAYQPFSEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSG--- 118 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 + + + RIL+P+++ SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP + Sbjct: 119 -PLQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPAT 177 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 178 IALPFKLMLFVLVDGWQLLVGSLAQSF 204 >gi|154174223|ref|YP_001408145.1| flagellar biosynthesis protein FliP [Campylobacter curvus 525.92] gi|112802855|gb|EAU00199.1| flagellar biosynthetic protein FliP [Campylobacter curvus 525.92] Length = 245 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 108/244 (44%), Positives = 154/244 (63%), Gaps = 6/244 (2%) Query: 4 YCFFALFLVTPELVFAK--SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61 + ALF ++ +++ ++ P+ + TIL++AP L+ M+T Sbjct: 5 FVLAALFCISFGAPVDPVVPTINLSLSAPSSPQQLVNSLNVLIFLTILTLAPSLVFMMTS 64 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F R IIVFS LR MG VPP+ VIISLA+ +TF++M P +S + G++P + QI Sbjct: 65 FLRLIIVFSFLRQAMGTQQVPPSTVIISLAMVLTFFIMEPIGRQSYDEGVKPYLAEQIGY 124 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 +R +PF FM NTREKDL+LF + + + + D I I + +FMISEL Sbjct: 125 EEMFERSVKPFKNFMVKNTREKDLALFFRIRNLQNP----SNIDDIPLSIAMSAFMISEL 180 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 + +FEI FL+ LPFL+IDM+V++++MAMGMMMLPP ISLPFK++ FVL+DGW+LLV NL Sbjct: 181 KTAFEIAFLLYLPFLVIDMVVSSVLMAMGMMMLPPVMISLPFKLLIFVLVDGWNLLVGNL 240 Query: 242 VKSF 245 VKSF Sbjct: 241 VKSF 244 >gi|209963528|ref|YP_002296443.1| flagellar biosynthesis protein FliP [Rhodospirillum centenum SW] gi|209956994|gb|ACI97630.1| flagellar biosynthesis protein FliP [Rhodospirillum centenum SW] Length = 267 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 112/237 (47%), Positives = 151/237 (63%), Gaps = 12/237 (5%) Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80 S M D S + +V+ + TILS+AP LL+MVT F R ++V S+LR+ +G+ Sbjct: 27 QSFSMDMGGTGDASFAGRMVQVVALVTILSVAPGLLVMVTSFTRIVVVLSLLRSALGLQQ 86 Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140 PPN+V++ LAL +T YVM PTLDRS G+QP+++ QITE A +R+ EPF FM+ + Sbjct: 87 TPPNMVLLGLALLLTAYVMGPTLDRSWREGVQPMVDGQITEEQAFERIVEPFRDFMQAHV 146 Query: 141 REKDLSLFMDMAHSSHRNTDI------------TKNDHIEYRILIPSFMISELRRSFEIG 188 R KDL LF + R LI +F+ISELRR+FEIG Sbjct: 147 RPKDLELFRSFEAGTKSGAAPAAGSAGPAPSTEEAASAPGLRTLIAAFVISELRRAFEIG 206 Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 FL+ LPFL+IDMI+A ++MAMGMMMLPP ISLPFK+IFFV++DGW L+ LV+S+ Sbjct: 207 FLLFLPFLVIDMIIAAVLMAMGMMMLPPVIISLPFKIIFFVMVDGWLLVAGALVRSY 263 >gi|291276476|ref|YP_003516248.1| flagellar biosynthesis protein [Helicobacter mustelae 12198] gi|290963670|emb|CBG39502.1| flagellar biosynthesis protein [Helicobacter mustelae 12198] Length = 247 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 99/236 (41%), Positives = 149/236 (63%), Gaps = 4/236 (1%) Query: 10 FLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVF 69 F + +++ + P + + T+L +AP L++++T F R +IVF Sbjct: 15 FAYSIAAAPTIPTVNLSLTAPDTPKQLVTTLNVIIVLTLLVLAPSLVLVMTSFTRLVIVF 74 Query: 70 SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129 S LRT +G PP +++SLA+ +TF++M P + S + I P ++ +I+ TA R Sbjct: 75 SFLRTALGTQQSPPTQILVSLAMVLTFFIMEPVVRESYQKAIVPYLDAKISYETAFDRGV 134 Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189 +PF FM NTREKDL+LF + + T + LIP+FMISEL+ +F+IGF Sbjct: 135 QPFKDFMLKNTREKDLALFYRIRKLENPKTSA----DVSLTTLIPAFMISELKTAFQIGF 190 Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 L+ LPFL+IDM+V++I+MAMGMMMLPP ISLPFK++ FVL+DG++LL+ NLV+SF Sbjct: 191 LLYLPFLVIDMVVSSILMAMGMMMLPPVMISLPFKILIFVLVDGFNLLIGNLVESF 246 >gi|242281272|ref|YP_002993401.1| flagellar biosynthesis protein FliP [Desulfovibrio salexigens DSM 2638] gi|242124166|gb|ACS81862.1| flagellar biosynthetic protein FliP [Desulfovibrio salexigens DSM 2638] Length = 252 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 94/241 (39%), Positives = 143/241 (59%), Gaps = 8/241 (3%) Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSIS----TWIVRTFGIFTILSIAPILLIMVTCFPR 64 L+ P FA+ ++ + A ++ + TIL +AP +L+ +T F R Sbjct: 15 FLLLIPAAAFAQETVPTLTLNLAAGQEEPEQVAKLLEILFLLTILGMAPSILLTMTSFTR 74 Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124 IIVF LR MG +PPN ++ SLA+FMT +M PT + +QP +N +I + A Sbjct: 75 IIIVFHFLRQAMGTQQMPPNQILASLAIFMTVVIMMPTGKAINDSALQPYLNEEIGFSEA 134 Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184 I R P F+ +TREKDLS+F + T + + +L+ ++ ISEL+ Sbjct: 135 IDRAQVPIRTFLFKHTREKDLSIFYSITGEKRPET----KEDVNTMLLVAAYTISELKTG 190 Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 F IGFLI +PFLI+DM++A+I++AMGMMMLPP +SLPFK++ F+++DGWSLL ++V + Sbjct: 191 FTIGFLIYVPFLILDMVIASILLAMGMMMLPPAMVSLPFKILLFIMVDGWSLLTGSIVNT 250 Query: 245 F 245 F Sbjct: 251 F 251 >gi|87307408|ref|ZP_01089553.1| flagellar biosynthetic protein fliP-putative transporter of flagellar proteins [Blastopirellula marina DSM 3645] gi|87290148|gb|EAQ82037.1| flagellar biosynthetic protein fliP-putative transporter of flagellar proteins [Blastopirellula marina DSM 3645] Length = 317 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 82/239 (34%), Positives = 129/239 (53%), Gaps = 27/239 (11%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 ++ + T+LS+AP +L+M T F R IIV +LR +G +PP+ V+ ++ALF Sbjct: 75 GGLVSTIQIMVLLTVLSLAPAILLMTTGFIRIIIVLGLLRQALGTQQLPPSQVVTAIALF 134 Query: 94 MTFYVMSPTLDRSIEMGIQPLMN---------------------NQITETTAIQRVAEPF 132 MT +M PT E + P ++ A ++ +P Sbjct: 135 MTILLMYPTWQEVYEESVGPYTREEVNPDTGQQYKLFAVEDPATGEMGPDEAWEKGTKPI 194 Query: 133 WVFMRNNT----REKDLSLFMDMAHSSHRNT--DITKNDHIEYRILIPSFMISELRRSFE 186 FM D+ +F + ++ + D + + LIP+F++SEL+ +F Sbjct: 195 RHFMSKQIDIAGNSDDVWMFFEFLPQGTKDKIGEPQSYDDVPLQALIPAFILSELKTAFL 254 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGF I LPFLI+D++VA+I ++MGMMMLPP ISLPFK++ FVL+DGW+L+V L++SF Sbjct: 255 IGFQIYLPFLILDIVVASITISMGMMMLPPVMISLPFKLLLFVLVDGWTLVVGMLLQSF 313 >gi|261838080|gb|ACX97846.1| flagellar biosynthetic protein [Helicobacter pylori 51] Length = 252 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 102/224 (45%), Positives = 156/224 (69%), Gaps = 4/224 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 S++ +N P D + + T+L +AP L++++T F R I+VFS LRT +G Sbjct: 30 SVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQT 89 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ A PF FM NTR Sbjct: 90 PPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLKNTR 149 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 EKDL+LF + + + T + + +LIP+FMISEL+ +F+IGFL+ LPFL+IDM+ Sbjct: 150 EKDLALFFRIRNLPNPKT----PNEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVIDMV 205 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL ENLV SF Sbjct: 206 ISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 249 >gi|312962263|ref|ZP_07776755.1| flagellar biosynthetic protein FliP [Pseudomonas fluorescens WH6] gi|311283600|gb|EFQ62189.1| flagellar biosynthetic protein FliP [Pseudomonas fluorescens WH6] Length = 247 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 96/248 (38%), Positives = 148/248 (59%), Gaps = 7/248 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSIS---TWIVRTFGIFTILSIAPILLI 57 M L+L TP A + + + + + + ++ I T LS P ++ Sbjct: 1 MRVLLTLMLWLATPLAFGADPLSIPAITLGTNAAGAQEYSVSLQILLIMTALSFIPAFVM 60 Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 ++T F R IIVFSILR +G+ P N ++ +ALF+T ++M+P D+ + +QP + Sbjct: 61 LMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDKVNQQALQPYLAE 120 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177 ++T AI + P FM + TR DL LFM ++ + TDI D IL+P+F+ Sbjct: 121 KMTAQDAIDKAQGPIKDFMLSQTRSSDLELFMRLS----KRTDIASPDQAPLTILVPAFV 176 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 SEL+ +F+IGF+I +PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW+L+ Sbjct: 177 TSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALI 236 Query: 238 VENLVKSF 245 + L SF Sbjct: 237 IGTLASSF 244 >gi|260222420|emb|CBA31966.1| Flagellar biosynthetic protein fliP [Curvibacter putative symbiont of Hydra magnipapillata] Length = 218 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 92/220 (41%), Positives = 137/220 (62%), Gaps = 4/220 (1%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 + + ++T FT LS P +L+M+T F R +IV S+LR +G S PPN V Sbjct: 2 VGTGESGVNFSVPIQTLLFFTALSFIPAVLLMMTGFTRIVIVLSLLRQALGTQSAPPNQV 61 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 I+ L+LF+TF+VM PT DR QP ++ A+Q+ P FM TR+ D S Sbjct: 62 IVGLSLFLTFFVMGPTFDRIYADAYQPYSQGTMSFDQALQKAEVPIRNFMVKQTRQSDFS 121 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 LF +A K D R+L+P+F+ISEL+ +F+IGF+I +PFL+ID++VA+++ Sbjct: 122 LFAKLAKLPPDM----KADTAPIRVLVPAFVISELKSAFQIGFMIFIPFLVIDIVVASVL 177 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 M++GMMML P ++LPFK++ FVL DGW+LL+ +L SF+ Sbjct: 178 MSLGMMMLSPVLVALPFKLMLFVLADGWNLLIGSLAASFV 217 >gi|125973002|ref|YP_001036912.1| flagellar biosynthesis protein FliP [Clostridium thermocellum ATCC 27405] gi|256004799|ref|ZP_05429774.1| flagellar biosynthetic protein FliP [Clostridium thermocellum DSM 2360] gi|281417213|ref|ZP_06248233.1| flagellar biosynthetic protein FliP [Clostridium thermocellum JW20] gi|125713227|gb|ABN51719.1| flagellar biosynthetic protein FliP [Clostridium thermocellum ATCC 27405] gi|255991249|gb|EEU01356.1| flagellar biosynthetic protein FliP [Clostridium thermocellum DSM 2360] gi|281408615|gb|EFB38873.1| flagellar biosynthetic protein FliP [Clostridium thermocellum JW20] gi|316940762|gb|ADU74796.1| flagellar biosynthetic protein FliP [Clostridium thermocellum DSM 1313] Length = 260 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 90/228 (39%), Positives = 140/228 (61%), Gaps = 1/228 (0%) Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 A L + + + ++ + TILS+AP +LIM+T F R IIV S R +G Sbjct: 33 ALPKLGFTVEPSDNPQDVSTTIQIIVLLTILSLAPSILIMMTSFVRIIIVLSFFRNAIGT 92 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 +PPN V+I LALF+T ++M P L E +P N +IT+ A++R ++ FM Sbjct: 93 QQMPPNQVLIGLALFLTLFIMRPVLTEINETAFKPYTNQEITQEVALERSSDIIKRFMLK 152 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 T + DL LF+ ++ + + I+IP+F+ISEL +F+IGFLI +PFL+I Sbjct: 153 QTSKNDLGLFVSLSGMETPIKEEDIP-KLPLTIVIPAFIISELTIAFKIGFLIYIPFLVI 211 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 DM+V++ +M+MGMMMLPP ISLPFK++ F+++ GW+L+ + +V SF+ Sbjct: 212 DMVVSSTLMSMGMMMLPPVMISLPFKILLFIMVGGWNLMTQMIVNSFV 259 >gi|54307253|ref|YP_128273.1| flagellar biosynthesis protein FliP [Photobacterium profundum SS9] gi|46911673|emb|CAG18471.1| Putative flagellar assembly protein [Photobacterium profundum SS9] Length = 242 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 85/229 (37%), Positives = 136/229 (59%), Gaps = 4/229 (1%) Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 FA+ +N P + ++ F + T L+ P +L+M T F R IIV ILR M Sbjct: 17 AFAQDLPLLTINGPNGQEEYSVKLQIFLLMTALAFLPAMLLMTTSFTRIIIVLGILRQAM 76 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G+ PPN V++ +AL ++ ++M P + + + P ++T A + +P FM Sbjct: 77 GLQQSPPNRVLVGIALTLSLFIMRPVIYDIHDNAVVPYQKGEMTMFEAAKVAEQPLRQFM 136 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 TRE DL + +A + D +++ +++P+F++SEL+ +F+IGF++ +PFL Sbjct: 137 LQQTRETDLEQILRIADEPTPD----NVDDLDFLLVMPAFILSELKTAFQIGFMLFIPFL 192 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IIDM+VA+++MAMGMMML P ISLPFK++ FV++DGWS+ V L SF Sbjct: 193 IIDMVVASVLMAMGMMMLSPLIISLPFKLMVFVMVDGWSMTVGTLSASF 241 >gi|322833206|ref|YP_004213233.1| flagellar biosynthetic protein FliP [Rahnella sp. Y9602] gi|321168407|gb|ADW74106.1| flagellar biosynthetic protein FliP [Rahnella sp. Y9602] Length = 260 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 91/226 (40%), Positives = 143/226 (63%), Gaps = 6/226 (2%) Query: 22 SLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79 L +++ W ++T T L++ P +L+M T F R IIV +LR +G Sbjct: 37 QLPGIISQQMSNGTQNWSLPIQTLVFITTLTLLPAMLLMCTSFTRIIIVLGLLRNALGTP 96 Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139 S PPN V++ L LF+TF+VM+P D+ QP N+IT A+ + A+P FM Sbjct: 97 SAPPNQVLLGLGLFLTFFVMAPVFDKIYSDAYQPFSENKITMQEAMDKGAQPLRQFMLRQ 156 Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199 TRE DL+L+ +A+ + + + RIL+P+++ SEL+ +F+IGF + +PF+IID Sbjct: 157 TRESDLALYARLANIP----PLAGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFMIID 212 Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 213 LVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 258 >gi|124516299|gb|EAY57807.1| Flagellar biosynthesis protein FliP [Leptospirillum rubarum] Length = 265 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 92/193 (47%), Positives = 134/193 (69%), Gaps = 3/193 (1%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +L+M+T F R ++V S LR MG VPPN V++ L+LF+TF+VM+P E I Sbjct: 75 PAILVMMTSFTRIVVVLSFLRQAMGTAQVPPNQVLVGLSLFLTFFVMAPVWKTMDETAIT 134 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P ++ +I A+ R +P FM R+KD++LF+ +AH + D I +L Sbjct: 135 PYLDKKIAPDVAVDRAMKPVRAFMFRQVRQKDIALFVRIAHLPR---TPSSPDDIPTYVL 191 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 IP+F++SEL +FE+GFLI LPFLI+DM+V++++M+MGMMMLPPT +SLPFK++ FVL+D Sbjct: 192 IPAFVVSELSTAFEMGFLIYLPFLILDMVVSSVLMSMGMMMLPPTVVSLPFKILLFVLVD 251 Query: 233 GWSLLVENLVKSF 245 GWSL+V +LV+SF Sbjct: 252 GWSLVVGSLVRSF 264 >gi|304404260|ref|ZP_07385922.1| flagellar biosynthetic protein FliP [Paenibacillus curdlanolyticus YK9] gi|304347238|gb|EFM13070.1| flagellar biosynthetic protein FliP [Paenibacillus curdlanolyticus YK9] Length = 256 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 94/207 (45%), Positives = 142/207 (68%), Gaps = 4/207 (1%) Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98 V + T+LS+AP +L+++T F R +IV +RT +G +PPN V+I LA+F+TF+V Sbjct: 51 AVSILLLLTVLSVAPAILVLMTSFTRIVIVLGFVRTSLGTQQMPPNQVLIGLAMFLTFFV 110 Query: 99 MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 M+PTL + ++ +QP + +IT+ A + A P FM + TREKDL LFM + Sbjct: 111 MAPTLSQVNQVALQPYLKGEITQMQAFDKAAVPMKKFMFSQTREKDLLLFMKYTKTEKPK 170 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 + I +L+P++ ISEL+ +F++GF+I +PFLIIDM+V++ +MAMGMMMLPP Sbjct: 171 ----SYEDIPITVLVPAYAISELKTAFQMGFMIFIPFLIIDMVVSSTLMAMGMMMLPPVM 226 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLPFK++ FVL+DGW L+V++L+ SF Sbjct: 227 ISLPFKILLFVLVDGWYLIVKSLLISF 253 >gi|90406809|ref|ZP_01215001.1| flagellar biosynthesis protein [Psychromonas sp. CNPT3] gi|90312046|gb|EAS40139.1| flagellar biosynthesis protein [Psychromonas sp. CNPT3] Length = 249 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 89/224 (39%), Positives = 140/224 (62%), Gaps = 5/224 (2%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 + V + ++ T LS P +L+++T F R ++V SILR +G+ Sbjct: 28 TALTVTTNSLGNQEYSVTLQVLAFMTALSFLPAMLVLMTSFTRIVVVMSILRQALGLQQT 87 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 P N VI +ALF+TF++M+P D+ E +QP +N + AI++ +P FM TR Sbjct: 88 PSNQVINGIALFLTFFIMTPVFDKINEEALQPYLNEDMNIVQAIEQGKKPLMAFMLAQTR 147 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 KDL F+++A N + + + + +LIP+F+ SEL+ +F+IGF+I +PFLIID++ Sbjct: 148 LKDLETFLEIA-----NVQVDTPEEVPFTVLIPAFVTSELKTAFQIGFMIFIPFLIIDLV 202 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 VA+I+MAMGMMML P +SLPFK++ FVL+DGW+L++ +L SF Sbjct: 203 VASILMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLIMGSLANSF 246 >gi|117926839|ref|YP_867456.1| flagellar biosynthesis protein FliP [Magnetococcus sp. MC-1] gi|117610595|gb|ABK46050.1| flagellar biosynthetic protein FliP [Magnetococcus sp. MC-1] Length = 260 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 101/244 (41%), Positives = 147/244 (60%), Gaps = 9/244 (3%) Query: 7 FALFLVTPELVFAKSSLHDVMNIPADLSIS-----TWIVRTFGIFTILSIAPILLIMVTC 61 F + LV L + + + + + ++ T+ S+AP +L+MVT Sbjct: 20 FMVLLVGDALAVEVNLPGLSLQGGGNPGDADPEQVSIALQILAFMTLFSLAPGILVMVTS 79 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F R I+V S +R MG+ PPN V+I+LALF+T +VM P +D+ + + P +N QI Sbjct: 80 FTRVIVVMSFVRQAMGLQGQPPNQVLIALALFVTMFVMGPVMDKVWDTALNPYLNKQIGG 139 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 A P FM TRE DL LFM +A + K D R++IP+FM+SEL Sbjct: 140 EQAWDNAVIPVKDFMLRQTRESDLGLFMRLAG----MEQVEKRDEAPLRLVIPAFMVSEL 195 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 + +F+IGF++ LPFLI+DM+VA++VM+MGMMMLPP IS+P K+I FVL+DGW L+V +L Sbjct: 196 KTAFQIGFMVYLPFLIVDMVVASVVMSMGMMMLPPLVISMPIKLILFVLVDGWVLVVGSL 255 Query: 242 VKSF 245 V+SF Sbjct: 256 VQSF 259 >gi|157164339|ref|YP_001466589.1| flagellar biosynthesis protein FliP [Campylobacter concisus 13826] gi|112800704|gb|EAT98048.1| flagellar biosynthetic protein FliP [Campylobacter concisus 13826] Length = 243 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 108/242 (44%), Positives = 151/242 (62%), Gaps = 4/242 (1%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63 LF V A +++ +N P + + I T L++AP L+ M+T F Sbjct: 5 LSLAVLFCVVFGADPALPTINLSLNSPQNAEQLVNSLNVLLILTALALAPSLIFMMTSFL 64 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 R +IVFS LR MG VPP+ V+ISLA+ +TF++M P RS + GI+P + QI Sbjct: 65 RLVIVFSFLRQAMGTQQVPPSTVLISLAMVLTFFIMEPVGQRSYDEGIKPYIAEQIGYEE 124 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 + + +PF FM NTREKDL+LF + + + + I I + +FMISEL+ Sbjct: 125 MLDKSLKPFKEFMVKNTREKDLALFFRIRNLQNP----ANIEDIPLSIAMSAFMISELKT 180 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 SFEI FL+ LPFL+IDM+V++++MAMGMMMLPP ISLPFK++ FVL+DGW+LL+ NLVK Sbjct: 181 SFEIAFLLYLPFLVIDMVVSSVLMAMGMMMLPPVMISLPFKLLIFVLVDGWNLLIGNLVK 240 Query: 244 SF 245 SF Sbjct: 241 SF 242 >gi|254228804|ref|ZP_04922227.1| flagellar biosynthetic protein FliP [Vibrio sp. Ex25] gi|262396477|ref|YP_003288330.1| flagellar biosynthesis protein FliP [Vibrio sp. Ex25] gi|151938751|gb|EDN57586.1| flagellar biosynthetic protein FliP [Vibrio sp. Ex25] gi|262340071|gb|ACY53865.1| flagellar biosynthesis protein FliP [Vibrio sp. Ex25] Length = 252 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 80/235 (34%), Positives = 129/235 (54%), Gaps = 4/235 (1%) Query: 11 LVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70 P + ++ + ++ + T LS P ++M T F R I+V + Sbjct: 21 FAFPTMAADNGLTILSVSDGDTQQEYSVKLQILLLMTALSFLPAFILMATSFTRIIVVLA 80 Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130 ILR +G+ PPN V++ +AL +T +M P E QP N +IT A + Sbjct: 81 ILRQALGLQQSPPNRVLVGIALALTLLIMRPVWSDIHENAFQPYDNGEITLIQAFSVAEK 140 Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190 P FM T + L + +A+ K + I + +++P+F+ISEL+ +F+IGF+ Sbjct: 141 PVREFMLAQTHQSSLEQMLRIANEPLD----QKVEDISFAVVLPAFVISELKTAFQIGFM 196 Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 + +PFL+ID++VA+++MAMGMMML P +SLPFK++ FVL+DGW++ V L SF Sbjct: 197 LFIPFLVIDLVVASVLMAMGMMMLSPLIVSLPFKLVVFVLVDGWAMTVGTLSASF 251 >gi|300024600|ref|YP_003757211.1| flagellar biosynthetic protein FliP [Hyphomicrobium denitrificans ATCC 51888] gi|299526421|gb|ADJ24890.1| flagellar biosynthetic protein FliP [Hyphomicrobium denitrificans ATCC 51888] Length = 247 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 115/235 (48%), Positives = 166/235 (70%), Gaps = 2/235 (0%) Query: 12 VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71 V P A++ + + D S+S IV+ + T+LS+AP LL+MVT F RF+I S Sbjct: 15 VMPTAALAQTIDLNTLFPAGDASVSGRIVQLLVVMTVLSVAPGLLMMVTSFARFVIALSF 74 Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131 LR+G+G+ + P N++++SLALFMT +VM+PT + + G++P++ N+I++ QR EP Sbjct: 75 LRSGLGLQTTPSNMILVSLALFMTMFVMAPTFQAAWDNGVKPMVENKISQEEGYQRTTEP 134 Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191 F FM+ N REKD+++F D++ + D R+LIP+FM+SELRR FEIGFL+ Sbjct: 135 FRAFMKANVREKDIAIFQDLSAERFGEANKAGPDD--LRVLIPAFMVSELRRGFEIGFLV 192 Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 LPFL+ID++VATI+ +MGMMM+PPT +SLP K++FFVL+DGWSLLV LVKSFI Sbjct: 193 TLPFLVIDLVVATIMTSMGMMMMPPTVVSLPLKILFFVLVDGWSLLVGALVKSFI 247 >gi|91223205|ref|ZP_01258471.1| putative flagellar assembly protein [Vibrio alginolyticus 12G01] gi|269967106|ref|ZP_06181173.1| flagellar assembly protein [Vibrio alginolyticus 40B] gi|91192018|gb|EAS78281.1| putative flagellar assembly protein [Vibrio alginolyticus 12G01] gi|269828243|gb|EEZ82510.1| flagellar assembly protein [Vibrio alginolyticus 40B] Length = 252 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 78/235 (33%), Positives = 128/235 (54%), Gaps = 4/235 (1%) Query: 11 LVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70 P + ++ + ++ + T LS P ++M T F R ++V + Sbjct: 21 FAFPTMAADNGLTILSVSDGDTQQEYSVKLQILLLMTALSFLPAFILMATSFTRIVVVLA 80 Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130 ILR +G+ PPN V++ +AL +T +M P E QP N +IT A + Sbjct: 81 ILRQALGLQQSPPNRVLVGIALALTLLIMRPVWSDIYENAFQPYDNGEITLIQAFSVAEK 140 Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190 P FM T + L + +A+ + I + +++P+F+ISEL+ +F+IGF+ Sbjct: 141 PVREFMLAQTHQSSLEQMLRIANEPLD----QNVEDISFAVVLPAFVISELKTAFQIGFM 196 Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 + +PFL+ID++VA+++MAMGMMML P +SLPFK++ FVL+DGW++ V L SF Sbjct: 197 LFIPFLVIDLVVASVLMAMGMMMLSPLIVSLPFKLVVFVLVDGWAMTVGTLSASF 251 >gi|289523556|ref|ZP_06440410.1| flagellar biosynthetic protein FliP [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503248|gb|EFD24412.1| flagellar biosynthetic protein FliP [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 252 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 140/224 (62%), Gaps = 4/224 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 +L + S ++ + TILS+AP +++MVT F R I+V +R +G+ + Sbjct: 32 TLDINVRPGDSPSDVALTLQIIALITILSLAPAIVLMVTSFTRIIVVLGFVRQSIGLQQL 91 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PPN V+++LALF+TF+ MSP + I P M +I A + P FM + + Sbjct: 92 PPNQVLVTLALFLTFFTMSPVWQKIYSESINPYMAGEIATQEAYAKAIGPIRDFMFSQVK 151 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 +++LSL + ++ +D + R+LIP+FMI EL+++F++G LI +PF+++DMI Sbjct: 152 DEELSLMVSLSDLPQP----QNHDDVPTRVLIPAFMIGELKKAFQMGILIFIPFIVVDMI 207 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 VA+++++MGM+MLPP ISLPFKV+ FV+ DGW L++ ++V SF Sbjct: 208 VASVLLSMGMIMLPPMLISLPFKVLLFVVADGWDLVIYSVVSSF 251 >gi|327481256|gb|AEA84566.1| flagellar biosynthesis protein FliP [Pseudomonas stutzeri DSM 4166] Length = 258 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 102/259 (39%), Positives = 147/259 (56%), Gaps = 18/259 (6%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSI--------------STWIVRTFGIF 46 M+R A ++ L A+ + LSI + ++ I Sbjct: 1 MLRILLLATLMLVGPLAMAQEPSGILAQGNNPLSIPAITLTTDAEGQQEYSVSLQILLIM 60 Query: 47 TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106 T LS P ++++T F R IIVFSILR +G+ P N ++I L LF+T ++M+P DR Sbjct: 61 TALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILIGLTLFLTLFIMAPVFDRI 120 Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 + +QP ++ QI AI R P FM TRE DL LF+ ++ TDI + Sbjct: 121 NQDALQPYLSEQIPAQEAIARAEVPLKNFMLAQTRESDLELFVRLSQR----TDIASPEA 176 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA+++MAMGMMML P ISLPFK++ Sbjct: 177 APMTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIM 236 Query: 227 FFVLIDGWSLLVENLVKSF 245 FVL+DGW L++ L SF Sbjct: 237 LFVLVDGWGLIIGTLAGSF 255 >gi|121533746|ref|ZP_01665573.1| flagellar biosynthetic protein FliP [Thermosinus carboxydivorans Nor1] gi|121307737|gb|EAX48652.1| flagellar biosynthetic protein FliP [Thermosinus carboxydivorans Nor1] Length = 253 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 98/249 (39%), Positives = 150/249 (60%), Gaps = 9/249 (3%) Query: 2 IRYCFFALFLVTPELVFAKS-----SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILL 56 + + A +L A +L+ + + ++ T+LS+AP +L Sbjct: 8 MLFAVMAAWLSVIATAQAAPLVPVPNLNIGVTSAENPKDVALSLQVLFTLTVLSLAPSIL 67 Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116 IM+T F R IIV S LR+ + PPN V+I LALF+TFY MSP D+ + +QP + Sbjct: 68 IMMTSFTRIIIVLSFLRSALATQQTPPNQVLIGLALFLTFYTMSPYWDQINQNALQPYLA 127 Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176 I++ TA+ +P FM TRE DL+LF++++ N + I LIP+F Sbjct: 128 GTISQDTAMSEAMKPLRQFMLKQTRENDLALFVNLSEGPRPN----SPEDITTSTLIPAF 183 Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236 +ISEL+ +F+IGFLI +PF++IDM+VA+ +M+MGMMM+PP ISLPFK++ F+L+DGW L Sbjct: 184 IISELKTAFQIGFLIYIPFIVIDMVVASTLMSMGMMMVPPVMISLPFKLLLFILVDGWHL 243 Query: 237 LVENLVKSF 245 ++ +L+ SF Sbjct: 244 IIRSLITSF 252 >gi|323490154|ref|ZP_08095374.1| flagellar biosynthesis protein FliP [Planococcus donghaensis MPA1U2] gi|323396202|gb|EGA89028.1| flagellar biosynthesis protein FliP [Planococcus donghaensis MPA1U2] Length = 229 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 94/194 (48%), Positives = 134/194 (69%), Gaps = 4/194 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +LIM+T F R IIV S +RTG+G S+PPN V++ LALF+TF++MSP + + + Sbjct: 40 APGILIMMTSFTRIIIVLSFVRTGLGTQSMPPNQVLVGLALFLTFFIMSPIVVEMNDTAL 99 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 QP ++ ++ + A+ P FM NTREKDL+LF A + + I Sbjct: 100 QPYLDGEMEQQEALDTAVVPLKEFMAKNTREKDLALFFKYAELEKPD----SIEEIPLTS 155 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 L+P+F ISE++ +F+IGF+I +PFLIIDM+VA+ +MAMGMMMLPP ISLPFK++ FVL+ Sbjct: 156 LVPAFAISEMKTAFQIGFVIFIPFLIIDMVVASTLMAMGMMMLPPVMISLPFKILLFVLV 215 Query: 232 DGWSLLVENLVKSF 245 DGW L++E+L+ SF Sbjct: 216 DGWYLIIESLLVSF 229 >gi|153213266|ref|ZP_01948678.1| flagellar biosynthetic protein FliP [Vibrio cholerae 1587] gi|124116066|gb|EAY34886.1| flagellar biosynthetic protein FliP [Vibrio cholerae 1587] Length = 287 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 89/206 (43%), Positives = 135/206 (65%), Gaps = 5/206 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + T+L P ++I++T F R ++V SILR MG+ P N VII +ALF+TF++M Sbjct: 85 LQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFIM 144 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +P ++ E +QP +N QIT A EP FM TR DL F++M+ Sbjct: 145 APVFNQINEQAVQPYLNEQITARQAFDLAQEPLKAFMLKQTRVNDLETFVEMSG-----A 199 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 +T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGMMML P + Sbjct: 200 QVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGMMMLSPMIV 259 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW+L++ L SF Sbjct: 260 SLPFKLMLFVLVDGWNLILSTLAGSF 285 >gi|317133473|ref|YP_004092787.1| flagellar biosynthetic protein FliP [Ethanoligenens harbinense YUAN-3] gi|315471452|gb|ADU28056.1| flagellar biosynthetic protein FliP [Ethanoligenens harbinense YUAN-3] Length = 267 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 97/242 (40%), Positives = 141/242 (58%), Gaps = 4/242 (1%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63 +C + + +N S + ++ + T++++AP +LIM+T F Sbjct: 29 FCIVFSVGFAVSAASSDPGISLTLNGLTTPSGTANTLQILLLLTLIALAPSILIMMTSFT 88 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 R II S LR +G PPN V++ +ALF++ ++MSP +++ QPL+N QIT Sbjct: 89 RIIIFLSFLRNALGTQQTPPNQVLVGIALFLSLFIMSPVINQINTTAYQPLVNGQITTEQ 148 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 A +P FM T L F+ MA + + D+I +LIP+F+ISEL+R Sbjct: 149 AEVNAMKPLRQFMFKQTENASLKTFLSMAGTP----TVKSLDNIPNSVLIPAFVISELKR 204 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 +F +GFLI LPFLIID+IV T +M+MGMMMLPPT ISLP K+ FVL+DGW L V++LV Sbjct: 205 AFMMGFLIYLPFLIIDVIVGTTLMSMGMMMLPPTMISLPLKLALFVLVDGWGLTVQSLVY 264 Query: 244 SF 245 SF Sbjct: 265 SF 266 >gi|28901397|ref|NP_801052.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus RIMD 2210633] gi|153835929|ref|ZP_01988596.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus AQ3810] gi|260362951|ref|ZP_05775820.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus K5030] gi|260880238|ref|ZP_05892593.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus AN-5034] gi|260895355|ref|ZP_05903851.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus Peru-466] gi|28809944|dbj|BAC62885.1| putative flagellar assembly protein [Vibrio parahaemolyticus RIMD 2210633] gi|149750683|gb|EDM61428.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus AQ3810] gi|308085562|gb|EFO35257.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus Peru-466] gi|308092077|gb|EFO41772.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus AN-5034] gi|308112304|gb|EFO49844.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus K5030] gi|328469331|gb|EGF40277.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus 10329] Length = 252 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 81/235 (34%), Positives = 128/235 (54%), Gaps = 4/235 (1%) Query: 11 LVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70 P + + + ++ + T LS P ++M T F R I+V + Sbjct: 21 FAFPTMAADNGLTILSVTDGDAQQEYSVKLQILLLMTALSFLPAFILMATSFTRIIVVLA 80 Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130 ILR +G+ PPN V++ +AL +T +M P E QP N +IT A + Sbjct: 81 ILRQALGLQQSPPNRVLVGIALTLTLLIMRPVWTDIYENAFQPYDNGEITLVQAFSVAEK 140 Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190 P FM T + L + +A+ K + I + +++P+F+ISEL+ +F+IGF+ Sbjct: 141 PVRNFMLAQTHQSSLEQMLRIANEPLD----QKVEDISFAVVLPAFVISELKTAFQIGFM 196 Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 + +PFLIID++VA+++MAMGMMML P +SLPFK++ FVL+DGW++ V L SF Sbjct: 197 LFIPFLIIDLVVASVLMAMGMMMLSPLIVSLPFKLVVFVLVDGWAMTVGTLSASF 251 >gi|326204610|ref|ZP_08194466.1| flagellar biosynthetic protein FliP [Clostridium papyrosolvens DSM 2782] gi|325985177|gb|EGD46017.1| flagellar biosynthetic protein FliP [Clostridium papyrosolvens DSM 2782] Length = 243 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 98/239 (41%), Positives = 143/239 (59%), Gaps = 7/239 (2%) Query: 11 LVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70 L P + K ++ + + + ++ T+LSIAP +LIM+T F R II+ S Sbjct: 6 LAEPTVSVTKDGVN--IGASTNPKEVSSSIQLLIALTVLSIAPSILIMMTGFTRIIIILS 63 Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130 LR +G +PPN V+I LALF+T +VMSP L E QP N +IT+ AI + ++ Sbjct: 64 FLRNALGTQQMPPNQVLIGLALFITLFVMSPVLSDINENAFQPYTNGKITQQQAIDKSSQ 123 Query: 131 PFWVFMRNNT----REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 +M REKDL LFM + + + ++ P+F+ISEL +F+ Sbjct: 124 SIKTWMVKQIFSNKREKDLELFMTLGGQKEP-VKVQDASKLSLTMVAPAFLISELTVAFK 182 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GFLI LPFLIIDM+V++ +M+MGMMMLPP ISLPFK++ FVL+DGWS+L ++++ SF Sbjct: 183 FGFLIFLPFLIIDMVVSSALMSMGMMMLPPIMISLPFKILLFVLVDGWSMLTQSIITSF 241 >gi|288553049|ref|YP_003424984.1| flagellar biosynthesis protein FliP [Bacillus pseudofirmus OF4] gi|288544209|gb|ADC48092.1| flagellar biosynthesis protein FliP [Bacillus pseudofirmus OF4] Length = 234 Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 99/229 (43%), Positives = 148/229 (64%), Gaps = 4/229 (1%) Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 + D+ + D + ++ + T+LS+AP +LI++T F R +IV S +R G+ Sbjct: 9 AITQIPGLDLDFLSEDPANVATTIQLLIVLTVLSLAPGILILMTSFTRIVIVLSFVRQGL 68 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 S+PPN V+I LALF+TF++M+P E + P + ++T+ A+++ A P FM Sbjct: 69 ATQSMPPNQVLIGLALFLTFFIMAPIFAEVNEQALTPFLEGELTQEEALEQAAVPMKEFM 128 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 +TREKDL+LFM A D I LIP+F ISEL+ +F+IGFLI +PFL Sbjct: 129 AQHTREKDLALFMGYAGMDRPE----SLDDIPLTALIPAFAISELKTAFQIGFLIFVPFL 184 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +IDMIVA+++M+MGMMMLPP I+LPFK++ FVL+DGW L+V++L+ SF Sbjct: 185 VIDMIVASVLMSMGMMMLPPVMIALPFKILLFVLVDGWYLIVQSLLLSF 233 >gi|126665005|ref|ZP_01735988.1| flagellar biosynthetic protein FliP [Marinobacter sp. ELB17] gi|126630375|gb|EBA00990.1| flagellar biosynthetic protein FliP [Marinobacter sp. ELB17] Length = 259 Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 94/244 (38%), Positives = 147/244 (60%), Gaps = 8/244 (3%) Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSIS---TWIVRTFGIFTILSIAPILLIMVTC 61 A + P + P + ++ + T L+ P +L+M+T Sbjct: 19 IVIAAMVWAPLAQADLPGIPAFTVEPGAGEGQQEYSVTLQILALMTALTFLPAMLMMMTS 78 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F R IIVFSILR +G+ S P N +++ LALF+T ++M P L+ + +G+QP + ++T Sbjct: 79 FTRIIIVFSILRQALGLQSAPSNQILLGLALFLTIFIMKPVLEEANRVGLQPYLQEELTS 138 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 A++ +EPF FM TRE DL LFM MA + + + + +L+P+F+ SEL Sbjct: 139 LEAVEAASEPFKQFMLAQTRESDLGLFMRMA-----DEQFASPEDVTFWVLLPAFVTSEL 193 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 + +F+IGF++ +PFLIIDM+VA+++MAMGMMML P ISLPFK++ FVL+DGW+L++ L Sbjct: 194 KTAFQIGFILFIPFLIIDMVVASVLMAMGMMMLSPIIISLPFKIMLFVLVDGWALIMGTL 253 Query: 242 VKSF 245 S+ Sbjct: 254 AASY 257 >gi|330808228|ref|YP_004352690.1| flagellar biosynthetic protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376336|gb|AEA67686.1| Flagellar biosynthetic protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 249 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 92/220 (41%), Positives = 136/220 (61%), Gaps = 4/220 (1%) Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85 + + ++ I T LS P ++++T F R IIVFSILR +G+ P N Sbjct: 31 LGTNAEGAQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQ 90 Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145 ++ +ALF+T ++M+P DR + +QP + +IT A+ + P FM TR DL Sbjct: 91 ILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKITAQDAVAKAEVPIKDFMLAQTRSSDL 150 Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205 LFM ++ + TDI D IL+P+F+ SEL+ +F+IGF+I +PFLIID++VA+I Sbjct: 151 ELFMRLS----KRTDIPSADQAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASI 206 Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MAMGMMML P ISLPFK++ FVL+DGW+L++ L SF Sbjct: 207 LMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLAGSF 246 >gi|307546958|ref|YP_003899437.1| flagellar biosynthesis protein FliP [Halomonas elongata DSM 2581] gi|307218982|emb|CBV44252.1| flagellar biosynthesis protein FliP [Halomonas elongata DSM 2581] Length = 273 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 90/228 (39%), Positives = 138/228 (60%), Gaps = 6/228 (2%) Query: 20 KSSLHDVMNIPADLSISTWIVRTFGIFTI--LSIAPILLIMVTCFPRFIIVFSILRTGMG 77 + +++ P + W + + + ++ P L+M+T F R IIV S+LRT MG Sbjct: 48 AQQIPGIISEPMEDGGQKWSLSLQTLLLLSSMAFLPAALLMMTSFTRIIIVLSLLRTAMG 107 Query: 78 MGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMR 137 + PPN V++ LALF+TF++M+P PL N I +++ P FM Sbjct: 108 TQATPPNQVLLGLALFLTFFIMAPVFGEVHAQAWVPLSNGDINFPEFLRQAQGPLREFMM 167 Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197 TRE DL+LF +A ++ + RIL+PSF+ SEL+ +F+IGF I +PFLI Sbjct: 168 AQTREPDLALFARLADIG----ELQGPADVPMRILVPSFVTSELKTAFQIGFTIFIPFLI 223 Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ID++VA+ +M++GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 224 IDLVVASTLMSLGMMMVPPITISLPFKLMLFVLVDGWQLLIGSLAESF 271 >gi|330953762|gb|EGH54022.1| flagellar biosynthesis protein FliP [Pseudomonas syringae Cit 7] Length = 250 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 95/239 (39%), Positives = 144/239 (60%), Gaps = 7/239 (2%) Query: 10 FLVTPELVFAKSSLHDVMNIPADLSIS---TWIVRTFGIFTILSIAPILLIMVTCFPRFI 66 +VTP + A + + + ++ I T LS P ++++T F R I Sbjct: 13 VMVTPAALAADPLSIQAITLSNGADGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRII 72 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IVFSILR +G+ P N ++ +ALF+T ++M+P DR + +QP + +++ A+ Sbjct: 73 IVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKLSAQDAVA 132 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 + P FM TR DL LFM ++ + TDI D IL+P+F+ISEL+ +F+ Sbjct: 133 KAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTPDAAPLTILVPAFVISELKTAFQ 188 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGF+I +PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW+L+V L SF Sbjct: 189 IGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIVGTLAGSF 247 >gi|302185375|ref|ZP_07262048.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. syringae 642] Length = 250 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 95/239 (39%), Positives = 144/239 (60%), Gaps = 7/239 (2%) Query: 10 FLVTPELVFAKSSLHDVMNIPADLSIS---TWIVRTFGIFTILSIAPILLIMVTCFPRFI 66 +VTP + A + + + ++ I T LS P ++++T F R I Sbjct: 13 VMVTPAALAADPLSIPAITLSNGTDGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRII 72 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IVFSILR +G+ P N ++ +ALF+T ++M+P DR + +QP + +++ A+ Sbjct: 73 IVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKLSAQDAVA 132 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 + P FM TR DL LFM ++ + TDI D IL+P+F+ISEL+ +F+ Sbjct: 133 KAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTPDAAPLTILVPAFVISELKTAFQ 188 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGF+I +PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW+L+V L SF Sbjct: 189 IGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIVGTLAGSF 247 >gi|52080238|ref|YP_079029.1| flagellar biosynthesis protein FliP [Bacillus licheniformis ATCC 14580] gi|52785615|ref|YP_091444.1| flagellar biosynthesis protein FliP [Bacillus licheniformis ATCC 14580] gi|319645983|ref|ZP_08000213.1| FliP protein [Bacillus sp. BT1B_CT2] gi|52003449|gb|AAU23391.1| flagellar protein [Bacillus licheniformis ATCC 14580] gi|52348117|gb|AAU40751.1| FliP [Bacillus licheniformis ATCC 14580] gi|317391733|gb|EFV72530.1| FliP protein [Bacillus sp. BT1B_CT2] Length = 221 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 100/215 (46%), Positives = 148/215 (68%), Gaps = 4/215 (1%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 +D + + VR + T+ SIAP +LI++TCF R +IV S +RT + S+PPN V+I L Sbjct: 11 SDAANVSASVRLLLLLTVFSIAPGILILMTCFTRVVIVLSFVRTSLATQSMPPNQVLIGL 70 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 ALF+TF++M PT + + PLMNN+IT A + P FM +TR+KDL+LFM+ Sbjct: 71 ALFLTFFIMGPTFSEINKEALTPLMNNKITLDEAYTKAEAPIKTFMSKHTRQKDLALFMN 130 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 A + I ++P+F+ISEL+ +F++GF+I +PFLIIDM+VA+++M+MG Sbjct: 131 YAKMETPE----SINDIPLSTMVPAFVISELKTAFQMGFMIFIPFLIIDMVVASVLMSMG 186 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMMLPP ISLPFK++ FVL+DGW L+V++L++SF Sbjct: 187 MMMLPPVMISLPFKILLFVLVDGWYLIVKSLLQSF 221 >gi|260901180|ref|ZP_05909575.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus AQ4037] gi|308109389|gb|EFO46929.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus AQ4037] Length = 252 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 81/235 (34%), Positives = 128/235 (54%), Gaps = 4/235 (1%) Query: 11 LVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70 P + + + ++ + T LS P ++M T F R I+V + Sbjct: 21 FAFPTMAADNGLTILSVTDGDAQQEYSVKLQILLLMTALSFLPAFILMATSFTRIIVVLA 80 Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130 ILR +G+ PPN V++ +AL +T +M P E QP N +IT A + Sbjct: 81 ILRQALGLQQSPPNRVLVGIALTLTLLIMRPVWTDIYENAFQPYDNGEITLVQAFSVAEK 140 Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190 P FM T + L + +A+ K + I + +++P+F+ISEL+ +F+IGF+ Sbjct: 141 PVRNFMLAQTHQSSLEQMLRIANEPLD----QKLEDISFAVVLPAFVISELKTAFQIGFM 196 Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 + +PFLIID++VA+++MAMGMMML P +SLPFK++ FVL+DGW++ V L SF Sbjct: 197 LFIPFLIIDLVVASVLMAMGMMMLSPLIVSLPFKLVVFVLVDGWAMTVGTLSASF 251 >gi|260768789|ref|ZP_05877723.1| flagellar biosynthesis protein FliP [Vibrio furnissii CIP 102972] gi|260616819|gb|EEX42004.1| flagellar biosynthesis protein FliP [Vibrio furnissii CIP 102972] gi|315180492|gb|ADT87406.1| flagellar biosynthesis protein P [Vibrio furnissii NCTC 11218] Length = 249 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 89/242 (36%), Positives = 140/242 (57%), Gaps = 4/242 (1%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63 + L + P A+ ++ + S + ++ + T+LS P +IM TCF Sbjct: 8 WLVAILLVGLPSWASAQDISLFTIHDASGTSEYSAKLQILIMMTMLSFVPAFIIMCTCFT 67 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 R IIV SILR +G+ PPN V++ LAL T +M P QP M +IT + Sbjct: 68 RIIIVLSILRQALGLQQSPPNQVLVGLALVFTLLIMRPVWTEIYADAYQPYMQEKITLSE 127 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 AI A+P +M T+ + L +A S +D I + IL+P++++SEL+ Sbjct: 128 AISTGAKPLHHYMLAQTQVQTLEQVTKIAGESL----AENDDDIPFLILLPAYVLSELKI 183 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 +F+IGF++ LPFL+ID++VA+++M+MGMMML P +SLPFK++ FV++DGW +LV +L + Sbjct: 184 AFQIGFMVFLPFLVIDLVVASVLMSMGMMMLSPLIVSLPFKLLVFVVVDGWGMLVSSLSQ 243 Query: 244 SF 245 SF Sbjct: 244 SF 245 >gi|258624667|ref|ZP_05719602.1| flagellar assembly protein [Vibrio mimicus VM603] gi|258583059|gb|EEW07873.1| flagellar assembly protein [Vibrio mimicus VM603] Length = 256 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 83/241 (34%), Positives = 131/241 (54%), Gaps = 4/241 (1%) Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64 +V P ++ A + ++ + T LS P ++M T F R Sbjct: 19 ILAFCLVVFPTYAADNGLTILSVSDGATEQEYSVKLQILLLMTALSFLPAFILMATSFTR 78 Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124 I+V +ILR +G+ PPN V++ +AL +T +M P + QP N +IT A Sbjct: 79 IIVVLAILRQALGLQQTPPNRVLVGIALTLTLLIMRPVWTDIYKNAFQPYDNGEITLVQA 138 Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184 +P FM T + L + +A+ + I + I++P+F+ISEL+ + Sbjct: 139 FSVAEKPVREFMLAQTHQNSLEQMLRIANEPID----QNVEDISFAIVLPAFVISELKTA 194 Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 F+IGF++ +PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW++ V +L S Sbjct: 195 FQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKLVVFVLVDGWAMTVGSLSAS 254 Query: 245 F 245 F Sbjct: 255 F 255 >gi|66046673|ref|YP_236514.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. syringae B728a] gi|289678972|ref|ZP_06499862.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. syringae FF5] gi|63257380|gb|AAY38476.1| Flagellar transport protein FliP [Pseudomonas syringae pv. syringae B728a] gi|330899441|gb|EGH30860.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. japonica str. M301072PT] gi|330976008|gb|EGH76074.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 250 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 95/239 (39%), Positives = 144/239 (60%), Gaps = 7/239 (2%) Query: 10 FLVTPELVFAKSSLHDVMNIPADLSIS---TWIVRTFGIFTILSIAPILLIMVTCFPRFI 66 +VTP + A + + + ++ I T LS P ++++T F R I Sbjct: 13 VMVTPAALAADPLSIPAITLSNGADGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRII 72 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IVFSILR +G+ P N ++ +ALF+T ++M+P DR + +QP + +++ A+ Sbjct: 73 IVFSILRQALGLQQAPSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKLSAQDAVA 132 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 + P FM TR DL LFM ++ + TDI D IL+P+F+ISEL+ +F+ Sbjct: 133 KAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTPDAAPLTILVPAFVISELKTAFQ 188 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGF+I +PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW+L+V L SF Sbjct: 189 IGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIVGTLAGSF 247 >gi|218288310|ref|ZP_03492609.1| flagellar biosynthetic protein FliP [Alicyclobacillus acidocaldarius LAA1] gi|218241669|gb|EED08842.1| flagellar biosynthetic protein FliP [Alicyclobacillus acidocaldarius LAA1] Length = 272 Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 97/249 (38%), Positives = 151/249 (60%), Gaps = 7/249 (2%) Query: 4 YCFFALFLVTPELVFAKSSLHD-------VMNIPADLSISTWIVRTFGIFTILSIAPILL 56 + + P V A++S V + + V+ + T L++AP L Sbjct: 22 WMAVFIMCFHPSFVHAQTSPSAPAIPGVSVSVGGSGPTSVANTVKIVLLLTALTLAPAAL 81 Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116 I++TCF R I+V S +R + + + PPN V++ LALF+T +VM PTL ++ +QP + Sbjct: 82 ILMTCFTRVIVVLSFVRNALSLQTSPPNQVLVGLALFITLFVMQPTLQQANTQALQPYLR 141 Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176 QI++T AI+R PF VFM TR +DL LF+ H + + I L+P+F Sbjct: 142 GQISQTAAIERAEAPFKVFMAKQTRAQDLELFLAYRHETLTAEMERHPEAIAMSALVPAF 201 Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236 +SEL+ +F+IGF+I LPFL+ID++V+T +M+MGMMMLPP ISLPFKV+ FV+++GW L Sbjct: 202 TLSELQTAFQIGFMIYLPFLVIDLVVSTTLMSMGMMMLPPVMISLPFKVLLFVMVNGWYL 261 Query: 237 LVENLVKSF 245 +V++L+ + Sbjct: 262 VVKSLLAGY 270 >gi|120554901|ref|YP_959252.1| flagellar biosynthesis protein FliP [Marinobacter aquaeolei VT8] gi|120324750|gb|ABM19065.1| flagellar biosynthetic protein FliP [Marinobacter aquaeolei VT8] Length = 253 Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 152/247 (61%), Gaps = 10/247 (4%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTW-----IVRTFGIFTILSIAPILLIM 58 + + AL A++ L + + + ++ + T L+ P +L+M Sbjct: 10 FPWLALIAGLCLPALAQADLPGIPAFTVEPGENGTEEYSVTLQILALMTALTFLPAMLMM 69 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R I+VF+ILR +G+ + P N +++ LALF++ ++M P L+ + +G+QP + + Sbjct: 70 MTSFTRIIVVFAILRQALGLQATPSNQILLGLALFLSIFIMKPVLEEANRVGLQPYLQEE 129 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 +T A++ ++PF FM TRE DL+LFM +A + + + IL+P+F+ Sbjct: 130 VTSLEAVELASQPFRKFMLEQTREDDLALFMRIADVQY-----ETPQDVSFWILMPAFVT 184 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF++ +PFLIIDM+VA+++MAMGMMML P ISLPFK++ FVL+DGW+L++ Sbjct: 185 SELKTAFQIGFILFIPFLIIDMVVASVLMAMGMMMLSPIIISLPFKIMLFVLVDGWALIM 244 Query: 239 ENLVKSF 245 L S+ Sbjct: 245 GTLAASY 251 >gi|330972449|gb|EGH72515.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. aceris str. M302273PT] Length = 250 Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 96/239 (40%), Positives = 144/239 (60%), Gaps = 7/239 (2%) Query: 10 FLVTPELVFAKSSLHDVMNIPADLSIS---TWIVRTFGIFTILSIAPILLIMVTCFPRFI 66 +VTP + A + + + ++ I T LS P ++++T F R I Sbjct: 13 VMVTPAALAADPLSIPAITLSNGADGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRII 72 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IVFSILR +G+ P N ++ +ALF+T ++M+P DR + +QP + +++ A+ Sbjct: 73 IVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKLSAQDAVA 132 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 + P FM TR DL LFM ++ + TDI D IL+P+F+ISEL+ +F+ Sbjct: 133 KAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTPDAAPLTILVPAFVISELKTAFQ 188 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGF+I +PFLIIDM+VA+++MAMGMMML P ISLPFK++ FVL+DGW+L+V L SF Sbjct: 189 IGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIVGTLAGSF 247 >gi|134095087|ref|YP_001100162.1| flagellar biosynthesis protein FliP [Herminiimonas arsenicoxydans] gi|133738990|emb|CAL62038.1| Flagellar biosynthetic protein FliP Precursor [Herminiimonas arsenicoxydans] Length = 252 Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 92/233 (39%), Positives = 143/233 (61%), Gaps = 6/233 (2%) Query: 15 ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIA--PILLIMVTCFPRFIIVFSIL 72 + ++ L + + P T+ + + + ++ P +L+M+T F R IIV S+L Sbjct: 23 AAMAQQAGLPALTSTPTPGGGQTYSLSLQTLLLLTGLSFLPAVLLMMTSFTRIIIVLSLL 82 Query: 73 RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132 R +G S PPN VII L+LF+T +VMSP LD+ QP N+I A+ + P Sbjct: 83 RQALGTQSSPPNQVIIGLSLFLTLFVMSPVLDKIYVDAYQPFSANKIQMGEALDKAVAPL 142 Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192 FM TRE DL+L++ M+ ++ + I RIL+P+F+ SEL+ +F+I F I Sbjct: 143 KTFMIKQTRESDLALYVKMSKGP----ELQGPEDIPLRILVPAFITSELKTAFQISFAIF 198 Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PFLIIDM+VA+++M+MGMMM+ P ++LPFK++ FVL+DGW LL+ +L +SF Sbjct: 199 IPFLIIDMVVASVLMSMGMMMVSPAIVALPFKLMLFVLVDGWQLLIGSLAQSF 251 >gi|331006679|ref|ZP_08329957.1| Flagellar biosynthesis protein fliP [gamma proteobacterium IMCC1989] gi|330419511|gb|EGG93899.1| Flagellar biosynthesis protein fliP [gamma proteobacterium IMCC1989] Length = 280 Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 95/229 (41%), Positives = 143/229 (62%), Gaps = 4/229 (1%) Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 F S + + ++ + T L+ P +LIM+T F R IIVF+ILR + Sbjct: 54 SFPSLSAITLTTNEDGTQEYSVSIQVLLLMTTLTFIPAILIMMTSFTRIIIVFAILRQAL 113 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G+ P N ++I + LF+T ++M+P ++ E +QP + QIT AI +V EPF FM Sbjct: 114 GLQQSPSNQILIGMTLFLTLFIMTPVINEVNEQALQPYIAEQITSDQAIDKVIEPFHRFM 173 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 TRE DL LFMD+A+ + + + +LIPSF+ SEL+ +F+IGF++ +PFL Sbjct: 174 IGQTRESDLKLFMDIANVP----AVDTREEVPLTVLIPSFITSELKTAFQIGFILFIPFL 229 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +ID++VA+++MAMGMMML P ISLPFK++ FVL+DGW++L+ L SF Sbjct: 230 VIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWAMLMGTLAASF 278 >gi|330940696|gb|EGH43707.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. pisi str. 1704B] Length = 250 Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 96/239 (40%), Positives = 144/239 (60%), Gaps = 7/239 (2%) Query: 10 FLVTPELVFAKSSLHDVMNIPADLSIS---TWIVRTFGIFTILSIAPILLIMVTCFPRFI 66 +VTP + A + + + ++ I T LS P ++++T F R I Sbjct: 13 VMVTPAALAADPLSIPAITLSNGADGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRII 72 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IVFSILR +G+ P N ++ +ALF+T ++M+P DR + +QP + +++ A+ Sbjct: 73 IVFSILRQALGLQQAPSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKLSAQDAVA 132 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 + P FM TR DL LFM ++ + TDI D IL+P+F+ISEL+ +F+ Sbjct: 133 KAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTPDAAPLTILVPAFVISELKTAFQ 188 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGF+I +PFLIIDM+VA+++MAMGMMML P ISLPFK++ FVL+DGW+L+V L SF Sbjct: 189 IGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIVGTLAGSF 247 >gi|257484903|ref|ZP_05638944.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289629020|ref|ZP_06461974.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651610|ref|ZP_06482953.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. aesculi str. 2250] gi|298487821|ref|ZP_07005861.1| Flagellar biosynthesis protein fliP [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157546|gb|EFH98626.1| Flagellar biosynthesis protein fliP [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330866458|gb|EGH01167.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330986502|gb|EGH84605.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011077|gb|EGH91133.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 250 Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 98/248 (39%), Positives = 147/248 (59%), Gaps = 8/248 (3%) Query: 2 IRYCFFALFLVTPELVFAKSSLH----DVMNIPADLSISTWIVRTFGIFTILSIAPILLI 57 +R+ L ++ V A L + N + ++ I T LS P ++ Sbjct: 4 LRFVILLLLVMVTPAVLAADPLSIPAITLSNGADGQQEYSVSLQILLIMTALSFIPAFVM 63 Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 ++T F R IIVFSILR +G+ P N ++ +ALF+T ++M+P DR + +QP + Sbjct: 64 LMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAE 123 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177 ++T A+ + P FM TR DL LFM ++ + TDI D IL+P+F+ Sbjct: 124 KLTAQDAVAKAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTPDAAPLTILVPAFV 179 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 ISEL+ +F+IGF+I +PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW+L+ Sbjct: 180 ISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALI 239 Query: 238 VENLVKSF 245 V L SF Sbjct: 240 VGTLAGSF 247 >gi|305674368|ref|YP_003866040.1| flagellar export machinery protein [Bacillus subtilis subsp. spizizenii str. W23] gi|305412612|gb|ADM37731.1| component of the flagellar export machinery [Bacillus subtilis subsp. spizizenii str. W23] Length = 221 Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 95/217 (43%), Positives = 144/217 (66%), Gaps = 4/217 (1%) Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88 +D + V+ + T+ S+AP +LI++TCF R +IV S +RT + S+PPN V+I Sbjct: 9 SSSDPENVSSTVKLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATQSMPPNQVLI 68 Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148 LALF+TF++M+PT + + PLM+N+I+ A + EP FM +TR+KDL+LF Sbjct: 69 GLALFLTFFIMAPTFSEINKEALTPLMDNKISLDEAYSKAEEPIKEFMSKHTRQKDLALF 128 Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208 M+ A I ++P+F L+ +F+IGF+I +PFLIIDM+VA+++M+ Sbjct: 129 MNYAKMDKPE----SLKDIPLTTMVPAFATPILKTAFQIGFMIFIPFLIIDMVVASVLMS 184 Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MGMMMLPP ISLPFK++ FVL+DGW L+V++L++SF Sbjct: 185 MGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLLQSF 221 >gi|71735211|ref|YP_275528.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555764|gb|AAZ34975.1| flagellar biosynthetic protein FliP [Pseudomonas syringae pv. phaseolicola 1448A] gi|320325127|gb|EFW81196.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. glycinea str. B076] gi|320329386|gb|EFW85379.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. glycinea str. race 4] gi|330889047|gb|EGH21708.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. mori str. 301020] Length = 250 Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 97/248 (39%), Positives = 147/248 (59%), Gaps = 8/248 (3%) Query: 2 IRYCFFALFLVTPELVFAKSSLH----DVMNIPADLSISTWIVRTFGIFTILSIAPILLI 57 +R+ L ++ V A L + N + ++ I T LS P ++ Sbjct: 4 LRFVILLLLVMVTPAVLAADPLSIPAITLSNGADGQQEYSVSLQILLIMTALSFIPAFVM 63 Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 ++T F R IIVFSILR +G+ P N ++ +ALF+T ++M+P DR + +QP + Sbjct: 64 LMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAE 123 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177 +++ A+ + P FM TR DL LFM ++ + TDI D IL+P+F+ Sbjct: 124 KLSAQDAVAKAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTPDAAPLTILVPAFV 179 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 ISEL+ +F+IGF+I +PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW+L+ Sbjct: 180 ISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALI 239 Query: 238 VENLVKSF 245 V L SF Sbjct: 240 VGTLAGSF 247 >gi|88858098|ref|ZP_01132740.1| flagellar biosynthesis [Pseudoalteromonas tunicata D2] gi|88819715|gb|EAR29528.1| flagellar biosynthesis [Pseudoalteromonas tunicata D2] Length = 247 Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 91/247 (36%), Positives = 148/247 (59%), Gaps = 6/247 (2%) Query: 1 MIRYC-FFALFLVTPELVFAKSSLHDVMNIPADLSI-STWIVRTFGIFTILSIAPILLIM 58 MI++ ALF ++P L + + AD + + ++ I T LS P +IM Sbjct: 1 MIKWIILIALFTLSPSLSAEQGLQALTVTTNADGTQDYSVSLQVLAIMTALSFIPAAVIM 60 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R I+V +ILR +G+ S P N V++ +++FM+ ++M+P + E I P + + Sbjct: 61 MTSFTRIIVVLAILRQAIGLQSTPSNQVLVGMSVFMSIFIMAPIYQQIHEAAIDPYLKEE 120 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 +T A+++ +P FM TR DL F +A + K + + ++IP+F+ Sbjct: 121 LTSIQALEKAKDPLKTFMLRQTRISDLETFAQIAGLEK----LDKPEDAPFIVVIPAFIT 176 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F IGF+ +PFLI+D++VA+++MAMGMMML P +SLPFK++ FVL+DGWSL++ Sbjct: 177 SELQTAFIIGFMFFIPFLIVDLVVASVLMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVM 236 Query: 239 ENLVKSF 245 L KSF Sbjct: 237 GTLAKSF 243 >gi|206603142|gb|EDZ39622.1| Flagellar biosynthesis protein FliP [Leptospirillum sp. Group II '5-way CG'] Length = 265 Score = 199 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 92/193 (47%), Positives = 134/193 (69%), Gaps = 3/193 (1%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +L+M+T F R ++V S LR MG VPPN V++ L+LF+TF+VM+P E I Sbjct: 75 PAILVMMTSFTRIVVVLSFLRQAMGTAQVPPNQVLVGLSLFLTFFVMAPVWKTMDETAIT 134 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P ++ +I A+ R +P FM R+KD++LF+ +AH + D I +L Sbjct: 135 PYLDKKIAPDVAVDRAMKPVRAFMFRQVRQKDIALFVRIAHLPR---TPSSPDDIPTYVL 191 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 IP+F++SEL +FE+GFLI LPFLI+DM+V++++M+MGMMMLPPT +SLPFK++ FVL+D Sbjct: 192 IPAFVVSELSTAFEMGFLIYLPFLILDMVVSSVLMSMGMMMLPPTVVSLPFKILLFVLVD 251 Query: 233 GWSLLVENLVKSF 245 GWSL+V +LV+SF Sbjct: 252 GWSLVVGSLVRSF 264 >gi|330880585|gb|EGH14734.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. glycinea str. race 4] Length = 226 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 92/220 (41%), Positives = 138/220 (62%), Gaps = 4/220 (1%) Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85 + N + ++ I T LS P ++++T F R IIVFSILR +G+ P N Sbjct: 8 LSNGADGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQ 67 Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145 ++ +ALF+T ++M+P DR + +QP + +++ A+ + P FM TR DL Sbjct: 68 ILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKLSAQDAVAKAQVPIKDFMLAQTRTSDL 127 Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205 LFM ++ + TDI D IL+P+F+ISEL+ +F+IGF+I +PFLIID++VA++ Sbjct: 128 ELFMRLS----KRTDIPTPDAAPLTILVPAFVISELKTAFQIGFMIFIPFLIIDLVVASV 183 Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MAMGMMML P ISLPFK++ FVL+DGW+L+V L SF Sbjct: 184 LMAMGMMMLSPLIISLPFKIMLFVLVDGWALIVGTLAGSF 223 >gi|258592488|emb|CBE68797.1| Flagellar transport protein FliP [NC10 bacterium 'Dutch sediment'] Length = 243 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 93/240 (38%), Positives = 146/240 (60%), Gaps = 4/240 (1%) Query: 6 FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65 F A + F ++ A + T V+ + T+L++AP L+IM+T F R Sbjct: 7 FVAASPLAVGPSFVPIPQLPLVAGGAGSAEPTVAVQLVILLTLLAMAPALVIMLTSFSRI 66 Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 IIV S LRT MG +PPN V+I L LF+TF+VM+P ++ +QP ++ Q+ + A+ Sbjct: 67 IIVLSFLRTAMGTQQMPPNQVLIGLTLFLTFFVMAPVGEQINREALQPYLSRQLAQEAAL 126 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185 +R +P FM TRE+DL+L + +A + +L+P++ ISELR +F Sbjct: 127 ERALQPLRTFMFKQTRERDLALMVHLARLERPKDRAA----VPTHVLVPAYAISELRTAF 182 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +IGF++ +PFL+IDM+V++++++MGM+ LPP IS PFK++ FVL DGW L+V +LV F Sbjct: 183 QIGFVLFIPFLVIDMVVSSVLISMGMLFLPPPVISFPFKLLLFVLADGWHLVVRSLVIGF 242 >gi|103488403|ref|YP_617964.1| flagellar biosynthesis protein FliP [Sphingopyxis alaskensis RB2256] gi|98978480|gb|ABF54631.1| flagellar biosynthetic protein FliP [Sphingopyxis alaskensis RB2256] Length = 256 Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats. Identities = 89/221 (40%), Positives = 136/221 (61%), Gaps = 4/221 (1%) Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84 V I D + ++ + ++L++ P LL+M+T F R IIV SILR +G+ PPN Sbjct: 38 AVNEIGGDGRPLSLSLQILVLMSLLTVLPSLLLMMTSFTRIIIVLSILRHALGLQQTPPN 97 Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144 V++ L+LF++ +VM P + + I+P QI A+ R + FM TR+ D Sbjct: 98 QVLVGLSLFLSLFVMQPVISEVNRVAIEPYGQEQIDIGEAVSRSGDALHGFMMKQTRKTD 157 Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204 L +F +A R + + IL+P+F+ SEL+ +F+IGFLI LPFL+ID+IVA+ Sbjct: 158 LMMFAKIA----RAPAYASPKDVPFSILLPAFVTSELKTAFQIGFLIFLPFLVIDLIVAS 213 Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +M++GMMML PT IS+PFK++ FVL+DGW+L + +L SF Sbjct: 214 ALMSLGMMMLSPTIISMPFKLLLFVLVDGWALTMGSLAASF 254 >gi|258622510|ref|ZP_05717532.1| flagellar assembly protein [Vibrio mimicus VM573] gi|262173376|ref|ZP_06041053.1| flagellar biosynthesis protein FliP [Vibrio mimicus MB-451] gi|258585210|gb|EEW09937.1| flagellar assembly protein [Vibrio mimicus VM573] gi|261890734|gb|EEY36721.1| flagellar biosynthesis protein FliP [Vibrio mimicus MB-451] Length = 252 Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 83/241 (34%), Positives = 131/241 (54%), Gaps = 4/241 (1%) Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64 +V P ++ A + ++ + T LS P ++M T F R Sbjct: 15 ILAFCLVVFPTYAADNGLTILSVSDGATEQEYSVKLQILLLMTALSFLPAFILMATSFTR 74 Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124 I+V +ILR +G+ PPN V++ +AL +T +M P + QP N +IT A Sbjct: 75 IIVVLAILRQALGLQQTPPNRVLVGIALTLTLLIMRPVWTDIYKNAFQPYDNGEITLVQA 134 Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184 +P FM T + L + +A+ + I + I++P+F+ISEL+ + Sbjct: 135 FSVAEKPVREFMLAQTHQNSLEQMLRIANEPID----QNVEDISFAIVLPAFVISELKTA 190 Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 F+IGF++ +PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW++ V +L S Sbjct: 191 FQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKLVVFVLVDGWAMTVGSLSAS 250 Query: 245 F 245 F Sbjct: 251 F 251 >gi|330961233|gb|EGH61493.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. maculicola str. ES4326] Length = 250 Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 96/242 (39%), Positives = 145/242 (59%), Gaps = 7/242 (2%) Query: 7 FALFLVTPELVFAKSSLHDVMNIPADLSIS---TWIVRTFGIFTILSIAPILLIMVTCFP 63 L +V P ++ A + + + ++ I T LS P ++++T F Sbjct: 10 LLLVMVAPSVLAADPLSIPAITLSNGADGQQEYSVSLQILLIMTALSFIPAFVMLMTSFT 69 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 R IIVFSILR +G+ P N ++ +ALF+T ++M+P DR + +QP + ++T Sbjct: 70 RIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKLTAQD 129 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 A+ + P FM TR DL LFM ++ + TDI D IL+P+F+ISEL+ Sbjct: 130 AVAKAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTPDAAPLTILVPAFVISELKT 185 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 +F+IGF+I +PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW+L+V L Sbjct: 186 AFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIVGTLAG 245 Query: 244 SF 245 SF Sbjct: 246 SF 247 >gi|332187877|ref|ZP_08389610.1| flagellar biosynthetic protein FliP [Sphingomonas sp. S17] gi|332012038|gb|EGI54110.1| flagellar biosynthetic protein FliP [Sphingomonas sp. S17] Length = 293 Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 87/207 (42%), Positives = 136/207 (65%), Gaps = 4/207 (1%) Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98 ++ I +L+I P +++M+T F R +IV +ILR +G+ PPN V+I LA+F++ ++ Sbjct: 89 SLQVLIIMGLLTILPGIILMMTSFTRIVIVLAILRQALGLQQTPPNQVLIGLAMFLSLFI 148 Query: 99 MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 M+PT+ + IQP ++ T I+ P FM TR KD+++F MA S Sbjct: 149 MAPTISQMNANAIQPYAEGRLPGTEMIKAAGAPLHAFMAKQTRVKDVTMFAQMAKSG--- 205 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 + I Y +L+P+F+ SEL+ +F+IGFLI LPF++ID++VAT++MA+GMMML P+ Sbjct: 206 -PYASPNDIPYAVLLPAFVTSELKTAFQIGFLIFLPFIVIDLVVATVLMALGMMMLSPSI 264 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLPFK++ FVL+DGW+L + +L SF Sbjct: 265 ISLPFKLLLFVLVDGWALTMGSLANSF 291 >gi|229918642|ref|YP_002887288.1| flagellar biosynthetic protein FliP [Exiguobacterium sp. AT1b] gi|229470071|gb|ACQ71843.1| flagellar biosynthetic protein FliP [Exiguobacterium sp. AT1b] Length = 221 Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 92/224 (41%), Positives = 147/224 (65%), Gaps = 5/224 (2%) Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80 ++ ++N+ S ST ++ + T+L++AP LI++TCF R ++V S +R +G Sbjct: 2 TTFEQLINLETPDSTST-SIKLLILLTLLTLAPSFLILMTCFTRVVVVLSFIRPALGTQQ 60 Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140 PPN +I+ LALF+T +VMSP L E ++P ++++I++ A + FM T Sbjct: 61 TPPNQLIVGLALFITLFVMSPVLSDLNENALKPYLDDKISQDEAFDEASGTMKEFMSKYT 120 Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200 R++DL LF+ + T D + L+P++ ISEL+ +F+IGF+I LPFLIIDM Sbjct: 121 RQEDLQLFLKYGNYEQPET----LDDVPLLALVPAYAISELKTAFQIGFMIFLPFLIIDM 176 Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 +VA+++M+MGMMMLPP I+LPFK++ FVL+DGW L+VE+L++S Sbjct: 177 VVASVLMSMGMMMLPPVMIALPFKLLLFVLVDGWHLIVESLLRS 220 >gi|121997286|ref|YP_001002073.1| flagellar biosynthesis protein FliP [Halorhodospira halophila SL1] gi|121588691|gb|ABM61271.1| flagellar biosynthetic protein FliP [Halorhodospira halophila SL1] Length = 246 Score = 198 bits (503), Expect = 6e-49, Method: Composition-based stats. Identities = 90/215 (41%), Positives = 138/215 (64%), Gaps = 4/215 (1%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 D + V+ + T+L++ P +++M+T F R I+V +ILR +G S P N V+I L Sbjct: 34 EDGQTWSLSVQVLVLMTLLTLLPAMVLMMTAFTRIIVVLAILRQALGTASTPSNQVLIGL 93 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 ALF+T +VM P D E +QP M ++ A+++ +EP FM TRE D++LF+ Sbjct: 94 ALFLTLFVMMPVFDEINETALQPYMAEEMGAEEALEQASEPMREFMIRQTREDDIALFLR 153 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 +A ++ D + +LIP+FM SEL+ +F IGF++ LPFL+ID++VA+ +M+MG Sbjct: 154 IAD----YGEVDSPDDVPMSVLIPAFMTSELKTAFIIGFVLYLPFLVIDLVVASTLMSMG 209 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+ML P ISLPFK++ FVL+DGWSL++ L SF Sbjct: 210 MLMLSPMIISLPFKIMLFVLVDGWSLIMGTLASSF 244 >gi|163750540|ref|ZP_02157778.1| flagellar biosynthesis protein [Shewanella benthica KT99] gi|161329695|gb|EDQ00684.1| flagellar biosynthesis protein [Shewanella benthica KT99] Length = 248 Score = 198 bits (503), Expect = 7e-49, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 143/247 (57%), Gaps = 7/247 (2%) Query: 2 IRYCFFALFLVTPELVFAKSSLHDVM---NIPADLSISTWIVRTFGIFTILSIAPILLIM 58 + YCF L+ FA + + + + ++ + T +S P ++IM Sbjct: 4 LSYCFILSLLLISPGAFALDGVLPALIVTTTADGGTQYSVTMQILLLMTAMSFLPAMIIM 63 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R I+V SILR +G+ P N V+I +++FMTF++M+P D+ +QP + Sbjct: 64 LTSFTRIIVVLSILRQAIGLQQTPSNQVLIGISMFMTFFIMAPVFDKIYAEAVQPYIAET 123 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 + A EP FM TR DL F++++ +I + + +LIPSF+ Sbjct: 124 MNIEQAFNIGKEPIKTFMLAQTRVTDLDTFIEISG----YQNINSPEDVPMSVLIPSFIT 179 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK++ FVL+DGWSL++ Sbjct: 180 SELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVM 239 Query: 239 ENLVKSF 245 L SF Sbjct: 240 GTLANSF 246 >gi|148359333|ref|YP_001250540.1| flagellar biosynthetic protein FliP [Legionella pneumophila str. Corby] gi|148281106|gb|ABQ55194.1| flagellar biosynthetic protein FliP [Legionella pneumophila str. Corby] Length = 249 Score = 198 bits (503), Expect = 7e-49, Method: Composition-based stats. Identities = 98/226 (43%), Positives = 144/226 (63%), Gaps = 7/226 (3%) Query: 22 SLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79 S V P ++ + + T+L++ P LL+ +T F R IIV SILR +GM Sbjct: 26 SFPVVTMQPGTNGSQSYSINLQILIFMTLLTVLPGLLMAMTSFTRIIIVLSILRQAIGMA 85 Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139 P N ++I +ALFMT++VMSP ++ E IQP MN +I + A+ +P FM N Sbjct: 86 QTPTNQILIGIALFMTYFVMSPVFNKINETAIQPYMNERIDFSLALSNAQKPLRQFMLNQ 145 Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199 TR+ DLSLF AH+ + D I +LIP+F+ SEL+ +F+IGF++ LPFLIID Sbjct: 146 TRKNDLSLFEKFAHNVPK-----SLDEIPMSVLIPAFITSELKTAFQIGFILFLPFLIID 200 Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++V++++MAMGMMML P ISLPFK++ FV++DGW+L++ +L SF Sbjct: 201 LVVSSVLMAMGMMMLSPLIISLPFKIMLFVMVDGWTLVLGSLASSF 246 >gi|312879603|ref|ZP_07739403.1| flagellar biosynthetic protein FliP [Aminomonas paucivorans DSM 12260] gi|310782894|gb|EFQ23292.1| flagellar biosynthetic protein FliP [Aminomonas paucivorans DSM 12260] Length = 258 Score = 198 bits (503), Expect = 7e-49, Method: Composition-based stats. Identities = 89/207 (42%), Positives = 140/207 (67%), Gaps = 4/207 (1%) Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98 ++ + T+LS+AP +++M+T F R ++V +R MG+ +PPN V+++LALF+TF+ Sbjct: 55 TLQIVALMTVLSMAPAIILMLTSFTRILVVLGFIRNAMGLQQMPPNQVLVTLALFLTFFT 114 Query: 99 MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 M+P D+ G+ P MN QI A R +P FM TREK+LSL + +A Sbjct: 115 MTPVWDQIYGKGLVPYMNGQIPAAQAWDRSIKPLRAFMFRQTREKELSLMVRLAKMPQPK 174 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 D I R+L+P+FM+SEL+ +F++G ++ +PF++IDMIV++++M+MGM+MLPP Sbjct: 175 NQ----DGIPTRVLMPAFMLSELKTAFQMGVVLFIPFIVIDMIVSSVLMSMGMIMLPPMM 230 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLPFKV+ FV+ DGW+L++ +LV SF Sbjct: 231 ISLPFKVLLFVMADGWNLVIASLVTSF 257 >gi|327399031|ref|YP_004339900.1| flagellar biosynthetic protein FliP [Hippea maritima DSM 10411] gi|327181660|gb|AEA33841.1| flagellar biosynthetic protein FliP [Hippea maritima DSM 10411] Length = 249 Score = 198 bits (503), Expect = 7e-49, Method: Composition-based stats. Identities = 96/227 (42%), Positives = 148/227 (65%), Gaps = 4/227 (1%) Query: 20 KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79 S++ M + + ++ + T+L++AP +LIM+T F R IIV +ILR +G Sbjct: 26 APSINITMPTANNPTTIAESIKLLILLTVLALAPSILIMMTSFTRIIIVLAILRQALGTQ 85 Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139 +PPN ++I +ALF+T ++MSP ++ + PL N+IT A + +P FM Sbjct: 86 QMPPNQILIGIALFLTLFIMSPQINTIYKTAYLPLQKNEITLEGAYKNATKPLKTFMLKQ 145 Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199 TR+KDL+LF+ +A + + I+IP+F+ISEL+ +FE+GF+I +PFLIID Sbjct: 146 TRQKDLALFLRIAKKPNPK----NPQELSMDIVIPAFIISELKTAFEMGFIIYIPFLIID 201 Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 M+V++I+M+MGMMMLPP ISLPFK++ FVL DGW+L+V +L KSF+ Sbjct: 202 MVVSSILMSMGMMMLPPIMISLPFKLLIFVLADGWNLVVMSLFKSFM 248 >gi|262273547|ref|ZP_06051361.1| flagellar biosynthesis protein FliP [Grimontia hollisae CIP 101886] gi|262222525|gb|EEY73836.1| flagellar biosynthesis protein FliP [Grimontia hollisae CIP 101886] Length = 243 Score = 198 bits (503), Expect = 7e-49, Method: Composition-based stats. Identities = 90/241 (37%), Positives = 140/241 (58%), Gaps = 4/241 (1%) Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64 F FL+ F + + P + ++ F + T+LS P +L+MVT F R Sbjct: 6 LFIIFFLLFSLPAFGQDLPVLTVTGPDGTEEYSVKMQIFLLMTMLSFLPAMLLMVTSFTR 65 Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124 IIV ILR +G+ PPN V++ +AL +T + M P L E ++P N ++ A Sbjct: 66 IIIVLGILRQAIGLQQSPPNTVLVGIALILTLFTMRPVLTDIHENAVKPYQNGTLSLQQA 125 Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184 + +P FM TRE DL + +A+ + I+ +L+P+F++SEL+ + Sbjct: 126 VSVAEKPLKAFMLQQTRETDLDQILRIANEP----PHQAGEDIDLLLLMPAFVLSELKTA 181 Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 F+IGF++ +PFLIID++V++++MAMGMMML P ISLPFK++ FV++DGWS+LV L S Sbjct: 182 FQIGFMLFVPFLIIDIVVSSVLMAMGMMMLSPLIISLPFKLMIFVMVDGWSMLVGTLTAS 241 Query: 245 F 245 F Sbjct: 242 F 242 >gi|52842016|ref|YP_095815.1| flagellar biosynthesis protein FliP [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|296107380|ref|YP_003619080.1| flagellar biosynthetic protein FliP [Legionella pneumophila 2300/99 Alcoy] gi|52629127|gb|AAU27868.1| flagellar biosynthetic protein FliP [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|295649281|gb|ADG25128.1| flagellar biosynthetic protein FliP [Legionella pneumophila 2300/99 Alcoy] gi|307610489|emb|CBX00061.1| flagellar biosynthetic protein FliP [Legionella pneumophila 130b] Length = 249 Score = 198 bits (503), Expect = 7e-49, Method: Composition-based stats. Identities = 98/226 (43%), Positives = 144/226 (63%), Gaps = 7/226 (3%) Query: 22 SLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79 S V P ++ + + T+L++ P LL+ +T F R IIV SILR +GM Sbjct: 26 SFPVVTMQPGTDGSQSYSINLQILIFMTLLTVLPGLLMAMTSFTRIIIVLSILRQAIGMA 85 Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139 P N ++I +ALFMT++VMSP ++ E IQP MN +I + A+ +P FM N Sbjct: 86 QTPTNQILIGIALFMTYFVMSPVFNKINETAIQPYMNERIDFSLALSNAQKPLRQFMLNQ 145 Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199 TR+ DLSLF AH+ + D I +LIP+F+ SEL+ +F+IGF++ LPFLIID Sbjct: 146 TRKNDLSLFEKFAHNVPK-----SLDEIPMSVLIPAFITSELKTAFQIGFILFLPFLIID 200 Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++V++++MAMGMMML P ISLPFK++ FV++DGW+L++ +L SF Sbjct: 201 LVVSSVLMAMGMMMLSPLIISLPFKIMLFVMVDGWTLVLGSLASSF 246 >gi|307293814|ref|ZP_07573658.1| flagellar biosynthetic protein FliP [Sphingobium chlorophenolicum L-1] gi|306879965|gb|EFN11182.1| flagellar biosynthetic protein FliP [Sphingobium chlorophenolicum L-1] Length = 273 Score = 198 bits (503), Expect = 7e-49, Method: Composition-based stats. Identities = 90/218 (41%), Positives = 137/218 (62%), Gaps = 4/218 (1%) Query: 28 NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87 I D + ++ + ++L++ P L++M+T F R IIV S+LR +G+ PPN V+ Sbjct: 58 QISGDGRSLSLSLQILILMSLLTVLPSLILMMTSFTRIIIVLSLLRQALGLQQTPPNQVL 117 Query: 88 ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147 + L+LF++ +VM P +D+ P QI A+ R A+ FM TRE DL L Sbjct: 118 VGLSLFLSLFVMRPAIDQINAQAFDPYGKGQIPIEEAVGRSAKVLHGFMTKQTRETDLKL 177 Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 F ++A + T I + IL+P+F+ SEL+ +F+IGF+I LPFLIID++VA+ +M Sbjct: 178 FQNLAEAPAFRTPA----DIPFSILLPAFVTSELKTAFQIGFMIFLPFLIIDLVVASTLM 233 Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 A+GMMML PT IS+PFK++ FVL+DGW+L + +L SF Sbjct: 234 ALGMMMLSPTIISMPFKLLLFVLVDGWALTMGSLAGSF 271 >gi|326796455|ref|YP_004314275.1| flagellar biosynthetic protein FliP [Marinomonas mediterranea MMB-1] gi|326547219|gb|ADZ92439.1| flagellar biosynthetic protein FliP [Marinomonas mediterranea MMB-1] Length = 251 Score = 198 bits (503), Expect = 7e-49, Method: Composition-based stats. Identities = 92/221 (41%), Positives = 143/221 (64%), Gaps = 3/221 (1%) Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84 V P T ++ I T L++ P LIM+T F R IIV SILR +G+ P N Sbjct: 32 SVTTNPDGSQEYTVSLQILFIMTALTLLPSALIMMTSFTRIIIVLSILRQALGLQQAPSN 91 Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144 +I+ +ALF+T ++M PTLD+ E +QP +++ +T A++ + P FM TRE D Sbjct: 92 QIILGMALFLTLFIMGPTLDQINESALQPYLSDNMTSLQAVKAASIPIREFMLGQTREDD 151 Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204 ++LF+ +A + I + + + IL+P+F+ SEL+ +F+IGF++ +PFLI+DM+VA+ Sbjct: 152 IALFVKLAG---KEGQIPSLEDLPFTILMPAFVTSELKTAFQIGFMLFIPFLIVDMVVAS 208 Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++MAMGMMML P ISLPFK++ FV++DGWS+++ L SF Sbjct: 209 VLMAMGMMMLSPIIISLPFKIMLFVMVDGWSMIMGTLAASF 249 >gi|288870652|ref|ZP_06114850.2| flagellar biosynthetic protein FliP [Clostridium hathewayi DSM 13479] gi|288866388|gb|EFC98686.1| flagellar biosynthetic protein FliP [Clostridium hathewayi DSM 13479] Length = 259 Score = 197 bits (502), Expect = 8e-49, Method: Composition-based stats. Identities = 91/242 (37%), Positives = 140/242 (57%), Gaps = 3/242 (1%) Query: 6 FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65 F + ++ FA S + + + ++ +F L++ P LLIM+T F R Sbjct: 18 FIRVSAACGQIAFA-SDISLTLEGSSGSGKPMDMLDIMFLFLFLAVVPSLLIMMTSFTRI 76 Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 +IV S LR +G PPN V+I LALF+T ++MSP + +P IT A Sbjct: 77 VIVLSFLRNALGTQQSPPNQVMIGLALFLTLFIMSPVFAKVNTQAYEPYKAGAITREEAF 136 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND--HIEYRILIPSFMISELRR 183 R EP FM T +K L LF+ ++ + + + +L+PSF++SEL + Sbjct: 137 TRAQEPMKEFMLKQTEKKSLDLFLSISKTEVPDVSGGPEGYMKLGLTVLVPSFILSELNK 196 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 +F +GFLI +PFLIID++V++ +M+MGM+MLPPT I+LPFK++ FVL+DGWSL+++ LV Sbjct: 197 AFTMGFLIYIPFLIIDLVVSSTLMSMGMVMLPPTMIALPFKIMMFVLVDGWSLVIKTLVT 256 Query: 244 SF 245 F Sbjct: 257 GF 258 >gi|169827136|ref|YP_001697294.1| flagellar biosynthesis protein FliP [Lysinibacillus sphaericus C3-41] gi|168991624|gb|ACA39164.1| Flagellar biosynthetic protein [Lysinibacillus sphaericus C3-41] Length = 221 Score = 197 bits (502), Expect = 9e-49, Method: Composition-based stats. Identities = 88/194 (45%), Positives = 133/194 (68%), Gaps = 4/194 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +LI++T F R +IV S +RT + +PPN VI+ LALF+TF++M+PT + + Sbjct: 32 APSILILMTSFARIVIVLSFVRTALATQQMPPNQVIVGLALFLTFFIMAPTFQEVNKEAL 91 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 QPL + +I A R + PF FM +TR+KDL LF+ + + I + Sbjct: 92 QPLFSEEIGLEEAYDRASLPFKEFMSKHTRQKDLDLFLSYNQAEKP----ASVEEIPLTM 147 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 L+P+F +SE++ +F+IGF+I +PFL+IDMIVA+ +M+MGMMMLPP ISLPFK++ FVL+ Sbjct: 148 LVPAFALSEIKTAFQIGFMIFIPFLVIDMIVASTLMSMGMMMLPPVMISLPFKILLFVLV 207 Query: 232 DGWSLLVENLVKSF 245 DGW L++++L++SF Sbjct: 208 DGWYLVMKSLLQSF 221 >gi|284041537|ref|YP_003391877.1| flagellar biosynthetic protein FliP [Conexibacter woesei DSM 14684] gi|283945758|gb|ADB48502.1| flagellar biosynthetic protein FliP [Conexibacter woesei DSM 14684] Length = 213 Score = 197 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 86/207 (41%), Positives = 134/207 (64%), Gaps = 3/207 (1%) Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98 ++ + ++ P L +T F R +IV +RT +G + PPN V++ +ALF+T +V Sbjct: 9 AIQVLLLIGAFTLIPAGLFCLTGFTRILIVLGFIRTAIGTPTAPPNQVLVGIALFLTLFV 68 Query: 99 MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 M+PT + E PL +I A++R EP FM TR KDL+LF+ ++ + + Sbjct: 69 MAPTFTQIKETAWDPLEAGRINTAQAVRRAEEPLRQFMFEQTRTKDLALFVRLSRTREQP 128 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 I +LIP+F++SEL+ +F+IGF+I LPFL+ID+IVA+ +M+MGM+MLPP Sbjct: 129 RTRA---DIPTTVLIPAFIVSELKTAFQIGFMIFLPFLVIDLIVASTLMSMGMIMLPPVF 185 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLPFK++ FVL+DGW+L+ ++LV+SF Sbjct: 186 ISLPFKILLFVLVDGWALITDSLVRSF 212 >gi|225850263|ref|YP_002730497.1| flagellar biosynthetic protein FliP [Persephonella marina EX-H1] gi|225646564|gb|ACO04750.1| flagellar biosynthetic protein FliP [Persephonella marina EX-H1] Length = 222 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 101/207 (48%), Positives = 140/207 (67%), Gaps = 5/207 (2%) Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98 ++ + TILS+AP +LI VT F R +IV S+LR +G+ PPN VII+ +LF+TF+V Sbjct: 20 TLKILFLITILSLAPSILITVTAFVRIVIVLSLLRHALGIPQSPPNQVIIAFSLFLTFFV 79 Query: 99 MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 M P D IQP + +I + AI+R EP FM NTR++DL LF+D+A + Sbjct: 80 MKPVFDDINGNAIQPYLKKEIGDMEAIERAKEPVKKFMLKNTRKEDLKLFLDIAGEKPK- 138 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 D + LIP+FMISE++ +FEI F+I LPFLIIDM+VA+I+M+MGMMM+PP Sbjct: 139 ----SPDEVSMVSLIPAFMISEIKTAFEIVFIIFLPFLIIDMLVASILMSMGMMMIPPML 194 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLPFK+I FVL DG+ LL + L++S+ Sbjct: 195 ISLPFKLILFVLADGFELLTKALIQSY 221 >gi|254506844|ref|ZP_05118983.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus 16] gi|219550129|gb|EED27115.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus 16] Length = 244 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 89/206 (43%), Positives = 138/206 (66%), Gaps = 5/206 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + T+L P ++I++T F R ++V SILR MG+ P N VII +A+F+TF++M Sbjct: 42 LQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIAIFLTFFIM 101 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP L++ ++ +QP +N QIT A P FM TR KDL F++++ S+ Sbjct: 102 SPVLNKINDVAVQPYINEQITAREAFDLAQAPMKDFMLKQTRVKDLETFVNISGST---- 157 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 T + + +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGMMML P + Sbjct: 158 -ATAPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGMMMLSPMIV 216 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGW+L++ L SF Sbjct: 217 SLPFKLMLFVLVDGWNLILSTLAGSF 242 >gi|119899016|ref|YP_934229.1| flagellar biosynthesis protein FliP [Azoarcus sp. BH72] gi|119671429|emb|CAL95342.1| flagellar biosynthetic protein FliP [Azoarcus sp. BH72] Length = 258 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 93/227 (40%), Positives = 150/227 (66%), Gaps = 6/227 (2%) Query: 21 SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 L + + P + + V+T + T+LS P L++M+T F R IIVFS+LR +G Sbjct: 34 QGLPALNSTPGPGGSTNYSLPVQTLALLTLLSFIPALVLMMTSFTRIIIVFSLLRQAIGT 93 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 + PPN V++ LALF+TF++M+P D+ QP+ +I+ A++R P FM Sbjct: 94 QTSPPNQVLLGLALFLTFFIMAPVADKVYLEAYQPMSEGRISFEQALERATVPVKAFMLK 153 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 RE DLSLF +A ++ + K + + R+++P+F+ SEL+ +F+IGF++ +PF+II Sbjct: 154 QVREPDLSLFTGLA----KHPPVEKAEDLPMRVVVPAFVTSELKTAFQIGFIVFIPFIII 209 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 DM+VA+++M+MGMMM+ P +SLPFK++ FVL+DGW+LL+ +LV+SF Sbjct: 210 DMVVASVLMSMGMMMMSPVIVSLPFKIMLFVLVDGWTLLIGSLVQSF 256 >gi|163800128|ref|ZP_02194029.1| putative flagellar assembly protein [Vibrio sp. AND4] gi|159175571|gb|EDP60365.1| putative flagellar assembly protein [Vibrio sp. AND4] Length = 255 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 79/232 (34%), Positives = 128/232 (55%), Gaps = 4/232 (1%) Query: 14 PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73 P + ++ + ++ + T LS P ++M T F R I+V +ILR Sbjct: 27 PTMAADNGLTILSVSDGDTQQEYSVKLQILLLMTALSFLPAFILMATSFTRIIVVLAILR 86 Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133 +G+ PPN V++ +AL +T +M P + +P N +IT A +P Sbjct: 87 QALGLQQSPPNRVLVGIALALTLLIMRPVWTDIHDNAFKPYDNGEITLMQAFSVAEKPVR 146 Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193 FM T + L + +A+ + I + +++P+F+ISEL+ +F+IGF++ + Sbjct: 147 NFMLAQTHQSSLEQMLRIANEPID----QNIEDISFAVVLPAFVISELKTAFQIGFMLFI 202 Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW++ V L SF Sbjct: 203 PFLIIDLVVASVLMAMGMMMLSPLIISLPFKLVIFVLVDGWAMTVGTLSASF 254 >gi|149377875|ref|ZP_01895604.1| flagellar biosynthesis protein P [Marinobacter algicola DG893] gi|149357817|gb|EDM46310.1| flagellar biosynthesis protein P [Marinobacter algicola DG893] Length = 254 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 93/248 (37%), Positives = 154/248 (62%), Gaps = 14/248 (5%) Query: 7 FALFLVTPELVFAKSSLHDVMNIPA---------DLSISTWIVRTFGIFTILSIAPILLI 57 A + +A ++L D+ IPA + + ++ + T L+ P +L+ Sbjct: 10 LATLALLIFTAWAPAALADIPGIPAFTVTPGEEEGVQEYSVSLQILALMTALTFLPAMLM 69 Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 M+T F R I+VF+ILR +G+ S P N +++ L LF+T ++M P L+ E+ +QP M Sbjct: 70 MMTSFTRIIVVFAILRQALGLQSTPSNQILLGLTLFLTIFIMKPVLEEVNEVALQPYMQE 129 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177 +++ A+++ ++PF FM TRE DL LFM +A + + + + +L+P+F+ Sbjct: 130 ELSSLEAVEQASQPFRKFMLAQTRESDLGLFMRIADEQY-----DTAEDVSFWVLLPAFV 184 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 SEL+ +F+IGF++ +PFLIIDM+VA+++MAMGMMML P ISLPFK++ FVL+DGW+L+ Sbjct: 185 TSELKTAFQIGFILFIPFLIIDMVVASVLMAMGMMMLSPIIISLPFKIMLFVLVDGWALI 244 Query: 238 VENLVKSF 245 + L S+ Sbjct: 245 MGTLAASY 252 >gi|330447937|ref|ZP_08311585.1| flagellar biosynthetic protein FliP [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492128|dbj|GAA06082.1| flagellar biosynthetic protein FliP [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 254 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 82/245 (33%), Positives = 127/245 (51%), Gaps = 4/245 (1%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 + + ++ + + ++ + T LS P L+M T Sbjct: 13 LTLVVIIGCLFFSSQVEANSGLNFLTVTDEQGEQEYSVKLQILLLMTALSFIPAFLLMAT 72 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R IIV SILR +G+ PPN +++ +AL +T +M P + P N IT Sbjct: 73 SFTRIIIVLSILRQALGLQQSPPNRILVGIALSLTILIMRPVWSDVYDNAFVPYDNGDIT 132 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A +P FM T + L M +A+ + I + I++P+F++SE Sbjct: 133 LLQAFDTAEKPVRDFMLKQTHQSALEQMMRIANEPLD----QDVEDISFAIVLPAFVVSE 188 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +F+IGF++ +PFLIID++VA+++MAMGMMML P ISLPFK+I FVL DGW++ V + Sbjct: 189 LKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKLIVFVLADGWTMTVGS 248 Query: 241 LVKSF 245 L SF Sbjct: 249 LSASF 253 >gi|302874603|ref|YP_003843236.1| flagellar biosynthetic protein FliP [Clostridium cellulovorans 743B] gi|307690786|ref|ZP_07633232.1| flagellar biosynthesis protein FliP [Clostridium cellulovorans 743B] gi|302577460|gb|ADL51472.1| flagellar biosynthetic protein FliP [Clostridium cellulovorans 743B] Length = 257 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 85/193 (44%), Positives = 130/193 (67%), Gaps = 4/193 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +L+ +T F R IV S L+ +G PP+ V+I L+LF+TF+VMSPT+ + +Q Sbjct: 68 PSILLTMTSFTRISIVLSFLKNAIGTQQTPPSQVLIGLSLFLTFFVMSPTISKVNTNALQ 127 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P +NNQI++ AI FM TR+KDL LF D+ + TK + ++ ++ Sbjct: 128 PYLNNQISQQQAIDIGTTEMKTFMLKQTRKKDLKLFRDIRGV----AEETKPEDLKMEVV 183 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 IPSF+ISEL+ +F IGF I +PFLIID +VA+++M+MGM M+ P +S+PFK++ F+++D Sbjct: 184 IPSFIISELKTAFTIGFFIYIPFLIIDFVVASVLMSMGMFMISPMMVSIPFKILLFIMVD 243 Query: 233 GWSLLVENLVKSF 245 GW+L+V++LV SF Sbjct: 244 GWNLIVKSLVLSF 256 >gi|15615005|ref|NP_243308.1| flagellar biosynthesis protein FliP [Bacillus halodurans C-125] gi|10175062|dbj|BAB06161.1| flagellar protein required for flagellar formation [Bacillus halodurans C-125] Length = 233 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 99/217 (45%), Positives = 146/217 (67%), Gaps = 4/217 (1%) Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88 + D + V+ + T+LS+AP +LI++TCF R +IV S +RTG+ ++PPN VII Sbjct: 20 MTDDPAGVATTVQLLLLLTVLSLAPSILILMTCFTRVVIVLSFVRTGLATQTMPPNQVII 79 Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148 +ALF+TF++M+P + + P ++ +I + A+ R A P FM +TREKDL+LF Sbjct: 80 GIALFITFFIMAPVFAEVNDQALTPFLDGEIDQQEAMDRAAIPMKEFMAKHTREKDLALF 139 Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208 M A + I L+P+F ISEL+ +F+IGFLI +PFL+IDMIVA+++M+ Sbjct: 140 MGYAGHDRPE----SIEDIPLTALVPAFAISELKTAFQIGFLIFIPFLVIDMIVASVLMS 195 Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MGMMMLPP ISLPFK++ FVL+DGW L+V++L+ SF Sbjct: 196 MGMMMLPPIMISLPFKILLFVLVDGWYLVVQSLLLSF 232 >gi|299534771|ref|ZP_07048101.1| flagellar biosynthesis protein FliP [Lysinibacillus fusiformis ZC1] gi|298729859|gb|EFI70404.1| flagellar biosynthesis protein FliP [Lysinibacillus fusiformis ZC1] Length = 221 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 89/194 (45%), Positives = 132/194 (68%), Gaps = 4/194 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +LI++T F R +IV S +RT + +PPN VII LALF+TF++M+PT + + Sbjct: 32 APSILILMTSFARIVIVLSFVRTALATQQMPPNQVIIGLALFLTFFIMAPTFQEVNKEAL 91 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 QPL +I A R + PF FM +TR+KDL LF+ + + I + Sbjct: 92 QPLFAEEIGIEEAYDRASVPFKEFMSKHTRQKDLDLFLTYNQADKP----ASVEEIPLTM 147 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 L+P+F +SE++ +F+IGF+I +PFL+IDMIVA+ +M+MGMMMLPP ISLPFK++ FVL+ Sbjct: 148 LVPAFALSEIKTAFQIGFMIFIPFLVIDMIVASTLMSMGMMMLPPVMISLPFKILLFVLV 207 Query: 232 DGWSLLVENLVKSF 245 DGW L++++L++SF Sbjct: 208 DGWYLVMKSLLQSF 221 >gi|126653733|ref|ZP_01725651.1| flagellar biosynthesis protein P [Bacillus sp. B14905] gi|126589697|gb|EAZ83833.1| flagellar biosynthesis protein P [Bacillus sp. B14905] Length = 221 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 88/194 (45%), Positives = 133/194 (68%), Gaps = 4/194 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +LI++T F R +IV S +RT + +PPN VI+ LALF+TF++M+PT + + Sbjct: 32 APSILILMTSFARIVIVLSFVRTALATQQMPPNQVIVGLALFLTFFIMAPTFQEVNKEAL 91 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 QPL + +I A R + PF FM +TR+KDL LF+ + + I + Sbjct: 92 QPLFSEEIGLDEAYDRASLPFKEFMSKHTRQKDLDLFLSYNQAEKP----ASVEEIPLTM 147 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 L+P+F +SE++ +F+IGF+I +PFL+IDMIVA+ +M+MGMMMLPP ISLPFK++ FVL+ Sbjct: 148 LVPAFALSEIKTAFQIGFMIFIPFLVIDMIVASTLMSMGMMMLPPVMISLPFKILLFVLV 207 Query: 232 DGWSLLVENLVKSF 245 DGW L++++L++SF Sbjct: 208 DGWYLVMKSLLQSF 221 >gi|68343342|gb|AAY90948.1| flagellar biosynthetic protein FliP [Pseudomonas fluorescens Pf-5] Length = 241 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 90/220 (40%), Positives = 137/220 (62%), Gaps = 4/220 (1%) Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85 + + + ++ I T LS P ++++T F R IIVFSILR +G+ P N Sbjct: 23 LGTNASGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQ 82 Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145 ++ +ALF+T ++M+P DR + +QP + ++T A+ + P FM TR DL Sbjct: 83 ILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKLTAQDAVAKAQVPIKDFMLAQTRSSDL 142 Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205 LFM ++ + TDI D IL+P+F+ SEL+ +F+IGF+I +PFLIID++VA++ Sbjct: 143 ELFMRLS----KRTDIASPDQAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASV 198 Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MAMGMMML P ISLPFK++ FVL+DGW+L++ L SF Sbjct: 199 LMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLAGSF 238 >gi|297584051|ref|YP_003699831.1| flagellar biosynthetic protein FliP [Bacillus selenitireducens MLS10] gi|297142508|gb|ADH99265.1| flagellar biosynthetic protein FliP [Bacillus selenitireducens MLS10] Length = 226 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 92/194 (47%), Positives = 131/194 (67%), Gaps = 4/194 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +LI++T F R +IV S +R G+ +PPN VII LALF+TF+VM+PT E + Sbjct: 37 APAILILMTSFTRIVIVLSFVRNGLATQQMPPNQVIIGLALFLTFFVMAPTFSEVNEAAL 96 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 QPL + I++ A P FM +TRE+DL+LFM A + I Sbjct: 97 QPLFDGDISQEEAFDEATIPMKEFMAQHTRERDLALFMGYAGQERPE----SLEDIPLTS 152 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 L+P+F+ISEL+ +F+IGF+I +PFL+IDM+VA+++M+MGMMMLPP I+LPFKV+ FVL+ Sbjct: 153 LVPAFVISELKTAFQIGFMIFVPFLVIDMVVASVLMSMGMMMLPPVMIALPFKVLLFVLV 212 Query: 232 DGWSLLVENLVKSF 245 DGW L+V +L+ +F Sbjct: 213 DGWHLVVRSLLYTF 226 >gi|77918770|ref|YP_356585.1| flagellar biosynthesis protein FliP [Pelobacter carbinolicus DSM 2380] gi|77544853|gb|ABA88415.1| flagellar biosynthetic protein FliP [Pelobacter carbinolicus DSM 2380] Length = 248 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 102/243 (41%), Positives = 154/243 (63%), Gaps = 6/243 (2%) Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSIS--TWIVRTFGIFTILSIAPILLIMVTCF 62 L +V P V A+ + + + + +++ I T+LS+AP +L+M T F Sbjct: 7 IVLMLLIVLPASVMAEPVPAITIGLGQAGGQAPPSTLMQILLIMTVLSVAPAILLMTTAF 66 Query: 63 PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122 R +V S LR MG +PPN VII L+LF+TF+VMSP ++ + +QP + +I + Sbjct: 67 IRLAVVLSFLRQAMGTQQMPPNQVIIGLSLFLTFFVMSPVFNQINDQAVQPYLTQKIDQK 126 Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182 A+ EP FM + T E +LSL M+++ D + + LIP+FM+SEL+ Sbjct: 127 QALTLAVEPMRQFMFSQTTESELSLLMEISGHP----DPAGKEDVPTLTLIPAFMLSELK 182 Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242 R+F+IGF+I +PFL+IDMIVA+++M+MGMMMLPP ISLPFK++ FVL+DGW+L+V +LV Sbjct: 183 RAFQIGFMIYIPFLVIDMIVASVLMSMGMMMLPPIIISLPFKLLLFVLVDGWTLIVGSLV 242 Query: 243 KSF 245 +SF Sbjct: 243 QSF 245 >gi|149928152|ref|ZP_01916398.1| flagellar biosynthesis protein P [Limnobacter sp. MED105] gi|149823137|gb|EDM82375.1| flagellar biosynthesis protein P [Limnobacter sp. MED105] Length = 256 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 102/231 (44%), Positives = 147/231 (63%), Gaps = 6/231 (2%) Query: 17 VFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74 A+ L V P + + ++T FT LS P LL+M+T F R +IV S+LR Sbjct: 28 AQAQQVLPGVTATPGANGTTNYSVPIQTLLFFTFLSFLPALLLMMTGFTRIVIVMSLLRM 87 Query: 75 GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134 +G + PPN VII L++F+TF++M+P DR E P NN+I +R + P Sbjct: 88 ALGTQNSPPNQVIIGLSMFLTFFIMAPVFDRVYENAYLPFSNNEIEFQEMTERASVPMKD 147 Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194 FM TRE DL+LFM + + ++ + + R+LIP+F+ SEL+ +F+IGF+I LP Sbjct: 148 FMLKQTREPDLALFMRL----GKVENVENPEDVPLRVLIPAFVTSELKTAFQIGFMIFLP 203 Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 FL+ID+IVA+++M+MGMMML P ISLPFK++ FVL+DGW+LLV +LV SF Sbjct: 204 FLVIDLIVASVLMSMGMMMLSPMLISLPFKIMLFVLVDGWTLLVGSLVASF 254 >gi|90577375|ref|ZP_01233186.1| putative flagellar assembly protein [Vibrio angustum S14] gi|90440461|gb|EAS65641.1| putative flagellar assembly protein [Vibrio angustum S14] Length = 243 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 133/246 (54%), Gaps = 5/246 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI-VRTFGIFTILSIAPILLIMV 59 M+ AL ++ A S L+ + + ++ + T LS P L+M Sbjct: 1 MLTLLLIALGVLFSSAAEANSGLNFLTVTDDQGEQEYSVKLQILLLMTALSFIPAFLLMA 60 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R IIV SILR +G+ PPN +++ +AL +T +M P + P N I Sbjct: 61 TSFTRIIIVLSILRQALGLQQSPPNRILVGIALSLTILIMRPVWTDVYDNAFVPYDNGDI 120 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 T A +P FM T + L M +A+ + I + I++P+F+IS Sbjct: 121 TLLQAFDTAEKPVRDFMLKQTHQSALEQMMRIANEPLD----QDVEDISFAIVLPAFVIS 176 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P ISLPFK+I FVL DGW++ V Sbjct: 177 ELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKLIVFVLADGWTMTVG 236 Query: 240 NLVKSF 245 +L SF Sbjct: 237 SLSASF 242 >gi|161501973|ref|YP_258777.2| flagellar biosynthesis protein FliP [Pseudomonas fluorescens Pf-5] Length = 249 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 90/220 (40%), Positives = 137/220 (62%), Gaps = 4/220 (1%) Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85 + + + ++ I T LS P ++++T F R IIVFSILR +G+ P N Sbjct: 31 LGTNASGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQ 90 Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145 ++ +ALF+T ++M+P DR + +QP + ++T A+ + P FM TR DL Sbjct: 91 ILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKLTAQDAVAKAQVPIKDFMLAQTRSSDL 150 Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205 LFM ++ + TDI D IL+P+F+ SEL+ +F+IGF+I +PFLIID++VA++ Sbjct: 151 ELFMRLS----KRTDIASPDQAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASV 206 Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MAMGMMML P ISLPFK++ FVL+DGW+L++ L SF Sbjct: 207 LMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLAGSF 246 >gi|306841043|ref|ZP_07473767.1| flagellar biosynthetic protein FliP [Brucella sp. BO2] gi|306288932|gb|EFM60232.1| flagellar biosynthetic protein FliP [Brucella sp. BO2] Length = 204 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 121/206 (58%), Positives = 163/206 (79%), Gaps = 3/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ FG+ T+LSIAP LLIMVT F RF I FS+LR+G+G+ + P ++V+ISLALFMTFYVM Sbjct: 1 MQLFGLLTVLSIAPGLLIMVTSFTRFAIAFSLLRSGLGLQTAPASMVMISLALFMTFYVM 60 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +P DR+ G+QPLM N+IT+ A +++PF FM R+KDL LF D+A S R + Sbjct: 61 APAFDRAWNNGVQPLMRNEITQEAAFGEISQPFREFMMAQVRDKDLRLFEDLADPSFRTS 120 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 D +++R+L+P+FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT I Sbjct: 121 DDGI---VDFRVLVPAFMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVI 177 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++FFVLIDGW++LV +L++SF Sbjct: 178 SLPFKILFFVLIDGWNILVGSLIRSF 203 >gi|172057873|ref|YP_001814333.1| flagellar biosynthetic protein FliP [Exiguobacterium sibiricum 255-15] gi|171990394|gb|ACB61316.1| flagellar biosynthetic protein FliP [Exiguobacterium sibiricum 255-15] Length = 222 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 88/211 (41%), Positives = 137/211 (64%), Gaps = 4/211 (1%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 S + V+ + T+LS+AP LLI++TCF R I+V S +R+ +G PPN +++ LALF Sbjct: 14 SGTATSVKLLVLLTLLSLAPSLLILMTCFTRVIVVLSFVRSALGTQQTPPNQLLVGLALF 73 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 +T +VM+P L +QP M+ +I++ A + FM TR DL LF+ + Sbjct: 74 ITLFVMAPVLTELNTTALQPYMDEKISQDEAFDQAGGTMKRFMSQYTRSNDLELFLKYGN 133 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 K + I L+P++ ISEL+ +F+IGF+I +PFL+IDM+V++++M+MGMMM Sbjct: 134 YEKPE----KVEDIPLVALVPAYAISELKTAFQIGFMIFIPFLVIDMVVSSVLMSMGMMM 189 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 LPP I+LPFK++ F+L+DGW L+VE+L+ S Sbjct: 190 LPPVMIALPFKLLLFILVDGWHLIVESLLVS 220 >gi|255021382|ref|ZP_05293430.1| Flagellar biosynthesis protein fliP [Acidithiobacillus caldus ATCC 51756] gi|254969245|gb|EET26759.1| Flagellar biosynthesis protein fliP [Acidithiobacillus caldus ATCC 51756] Length = 223 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 85/217 (39%), Positives = 138/217 (63%), Gaps = 4/217 (1%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P + + ++T T+L P LL+M+T F R IIV S+L+ +G +PP+ V++ Sbjct: 10 PGGGTEYSLSIQTLLFMTVLVFLPALLLMMTAFTRIIIVLSLLKQALGSTQMPPSQVMVG 69 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 LALF+TF+VM+P + +QPL +N+I A+ + P FM + TR DL+LF+ Sbjct: 70 LALFLTFFVMAPVFQQINTEALQPLNDNKIDLVQAMAKAEGPLRNFMLSQTRPDDLALFV 129 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 ++ + K +L+P+F+ SEL+ F+IGFLI +PF+IID++VA ++M++ Sbjct: 130 KLSGHK----ALEKPSDTPLSLLVPAFITSELKTGFQIGFLIFIPFVIIDLVVAAVLMSL 185 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 GMMML P ++S P K++ FVL+DGW L++ +LV+SF+ Sbjct: 186 GMMMLSPVTVSFPLKLMLFVLVDGWDLVIGSLVQSFV 222 >gi|237799248|ref|ZP_04587709.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022103|gb|EGI02160.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. oryzae str. 1_6] Length = 250 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 95/245 (38%), Positives = 145/245 (59%), Gaps = 7/245 (2%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSIS---TWIVRTFGIFTILSIAPILLIMVT 60 L +V P ++ A + + + ++ I T LS P ++++T Sbjct: 7 LILLMLVMVAPAVLAADPLSIPAITLSNSTDGQQEYSVSLQILLIMTALSFIPAFVMLMT 66 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R IIVFSILR +G+ P N ++ +ALF+T ++M+P DR + +QP + +++ Sbjct: 67 SFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKLS 126 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A+ + P FM TR DL LFM ++ + TDI D IL+P+F+ISE Sbjct: 127 AQDAVAKAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTPDAAPLTILVPAFVISE 182 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +F+IGF+I +PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW+L+V Sbjct: 183 LKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIVGT 242 Query: 241 LVKSF 245 L SF Sbjct: 243 LAGSF 247 >gi|288573013|ref|ZP_06391370.1| flagellar biosynthetic protein FliP [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568754|gb|EFC90311.1| flagellar biosynthetic protein FliP [Dethiosulfovibrio peptidovorans DSM 11002] Length = 256 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 88/218 (40%), Positives = 147/218 (67%), Gaps = 7/218 (3%) Query: 28 NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87 P D+S S ++ + T+LS+AP +L+MVT F R ++V +R +G+ PPN VI Sbjct: 45 TSPQDVSTS---LQIVALLTVLSVAPAILLMVTSFTRVLVVLGFVRNALGLQQTPPNQVI 101 Query: 88 ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147 ++LALF++ ++M+PT D G+ P M +I A++ V P FM + TRE++LSL Sbjct: 102 VTLALFLSLFIMAPTWDVMYSQGLSPYMEGRIGSMEALENVTTPLRRFMLSQTREEELSL 161 Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 + M+ + D I ++L+P++M+SEL+ +F++G +I +PF+++DMI+++++M Sbjct: 162 MVSMSGLERP----SSADDIPNKVLLPAYMLSELKSAFQMGIVIYVPFIVVDMIISSVLM 217 Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MGM+MLPP ISLPFKV+ FV+ DGW+L+V +L++SF Sbjct: 218 SMGMIMLPPMMISLPFKVLLFVMADGWNLVVVSLIRSF 255 >gi|315179664|gb|ADT86578.1| flagellar biosynthesis protein FliP [Vibrio furnissii NCTC 11218] Length = 252 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 81/242 (33%), Positives = 130/242 (53%), Gaps = 4/242 (1%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63 + P L ++ + + ++ + T LS P ++M T F Sbjct: 13 LALVLMLCAWPTLAADNGLTLFTVSDGSTQEEYSVKLQILLLMTALSFLPAFILMATSFT 72 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 R I+V +ILR +G+ PPN V++ +AL ++ +M P E +P QIT Sbjct: 73 RIIVVLAILRQALGLQQSPPNRVLVGIALALSLLIMRPVWSEVYEHAFKPYDQGQITLMQ 132 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 A +P FM T++ L + +A+ D I + +++P+F+ISEL+ Sbjct: 133 AFSVAEKPVRNFMLAQTQQSSLEQMLRIANEPLD----QNVDDISFAVVLPAFVISELKT 188 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 +F+IGF++ +PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW++ V L Sbjct: 189 AFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKLVVFVLVDGWAMTVGTLSA 248 Query: 244 SF 245 SF Sbjct: 249 SF 250 >gi|306820131|ref|ZP_07453779.1| flagellar biosynthetic protein FliP [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551909|gb|EFM39852.1| flagellar biosynthetic protein FliP [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 264 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 86/231 (37%), Positives = 147/231 (63%) Query: 15 ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74 A ++ +N + + + + FT+LS+ P +LIM+TCF R +++ S L+ Sbjct: 33 ASATAIPNVSLNINTGGNSTDMSDSIELLLFFTLLSVLPSILIMMTCFTRIVVILSFLKQ 92 Query: 75 GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134 +G P+ V++ LALF+TF++M+P ++ + G++P + QI + A++ V +P Sbjct: 93 AIGAQQTIPSQVMVGLALFLTFFIMAPVGKQAYDGGLKPYFDKQIKQEQAVENVMKPVRE 152 Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194 FM TR+ D+ LF++++ D ++I +LIP+F ISEL+ F+IGFL+ +P Sbjct: 153 FMFKQTRQSDIKLFLELSKDEQLKKDNVTLENIPNSVLIPAFCISELKTGFQIGFLLFIP 212 Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 F+IIDM+V++ +M+MGMMMLPP IS+PFK++ FVL+DGW L++ ++V F Sbjct: 213 FIIIDMVVSSTLMSMGMMMLPPMMISMPFKLLLFVLVDGWDLVIRSIVMGF 263 >gi|119469996|ref|ZP_01612801.1| flagellar biosynthesis protein P [Alteromonadales bacterium TW-7] gi|119446706|gb|EAW27979.1| flagellar biosynthesis protein P [Alteromonadales bacterium TW-7] Length = 246 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 144/246 (58%), Gaps = 5/246 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSI-STWIVRTFGIFTILSIAPILLIMV 59 M ++ +V V A+ + AD + + ++ I T LS P +IM+ Sbjct: 1 MTKWLLIIFAIVFVPSVSAEGIDALTITTNADGTQDYSVTLQVLAIMTALSFIPAAIIMM 60 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R I+V +ILR +G+ P N V++ ++LF++ ++M+P + ++ I+P +N Q+ Sbjct: 61 TSFTRIIVVLAILRQAIGLQQTPSNQVLLGMSLFLSIFIMAPIYQKVNDVAIEPYLNEQV 120 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 T A++ EP FM + R KDL F +A + + +LIP+F+ S Sbjct: 121 TSVQALELAKEPMKAFMLSQVRLKDLETFAKIAG----YDKLESPEETPLIVLIPAFVTS 176 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+ +F IGF+ +PFLI+D++VA+++MAMGMMML P +SLPFK++ FVL+DGWSL++ Sbjct: 177 ELQTAFIIGFMFFIPFLIVDLVVASVLMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVMG 236 Query: 240 NLVKSF 245 L KSF Sbjct: 237 TLAKSF 242 >gi|332558490|ref|ZP_08412812.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides WS8N] gi|332276202|gb|EGJ21517.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides WS8N] Length = 267 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 90/220 (40%), Positives = 138/220 (62%), Gaps = 4/220 (1%) Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85 + + + ++ + T L++ P L++ ++ F R IIV SILR +G PPN Sbjct: 49 TVTEGTGGTSYSLSLQILALMTALTVLPSLVLGMSAFTRIIIVLSILRQALGTQQTPPNQ 108 Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145 V+I+LALF+TF+VM PTL E + P ++ QI AI+R F+ NTR+ DL Sbjct: 109 VLIALALFLTFFVMQPTLGALYEQSLSPFLDGQIEAQPAIERGGAIMKDFLIANTRQNDL 168 Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205 +F D+A + + + + L+P+FM SEL+ +F+IGFL+ LPFL+IDM++A+I Sbjct: 169 LMFSDLAGAG----PYAEPTEVPFSTLLPAFMTSELKTAFQIGFLLFLPFLVIDMVIASI 224 Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MA+GMMML P +SLPFK++ FVL+DGW+L V +L S+ Sbjct: 225 LMALGMMMLSPMLVSLPFKLLLFVLVDGWALTVGSLAASY 264 >gi|327441040|dbj|BAK17405.1| flagellar biosynthesis pathway, component FliP [Solibacillus silvestris StLB046] Length = 221 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 95/215 (44%), Positives = 146/215 (67%), Gaps = 4/215 (1%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 +DL + V + T+LS+AP LLI++T F R +IV S RT + +PPN VII L Sbjct: 11 SDLGNVSTSVTLLFLLTVLSLAPSLLILMTSFARIVIVLSFTRTALATNQMPPNQVIIGL 70 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 ALF+TF++M+PT + E +QPL + +I A R PF FM +TR+KDL LF++ Sbjct: 71 ALFLTFFIMAPTFQQVNEQALQPLFDEEINLEEAYDRATIPFKQFMAQHTRQKDLELFIE 130 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 + + + + I +L+P+F +SE++ +F++GF+I +PFL+IDM+VA+ +M+MG Sbjct: 131 YNQAEYPD----SIEEIPMTLLVPAFALSEIKTAFQMGFMIFIPFLVIDMVVASTLMSMG 186 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMMLPP ISLPFK++ FVL+DGW L++++L++SF Sbjct: 187 MMMLPPVMISLPFKILLFVLVDGWYLVMKSLLQSF 221 >gi|332533116|ref|ZP_08408985.1| flagellar biosynthetic protein FliP [Pseudoalteromonas haloplanktis ANT/505] gi|332037398|gb|EGI73852.1| flagellar biosynthetic protein FliP [Pseudoalteromonas haloplanktis ANT/505] Length = 246 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 142/246 (57%), Gaps = 5/246 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSI-STWIVRTFGIFTILSIAPILLIMV 59 M ++ +V V A+ + AD + + ++ I T LS P +IM+ Sbjct: 1 MTKWLLIIFAMVFVPNVSAEGIDALTITTNADGTQDYSVTLQVLAIMTALSFIPAAIIMM 60 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R I+V +ILR +G+ P N V++ ++LF++ ++M+P + E I+P +N Q+ Sbjct: 61 TSFTRIIVVLAILRQAIGLQQTPSNQVLLGMSLFLSIFIMAPIYQQVNERAIEPYLNEQV 120 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 T A++ EP FM + R KDL F +A + +LIP+F+ S Sbjct: 121 TSVEALELAKEPMKAFMLSQVRLKDLETFAKIAG----YDQLNSPQDTPLIVLIPAFVTS 176 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+ +F IGF+ +PFLI+D++VA+++MAMGMMML P +SLPFK++ FVL+DGWSL++ Sbjct: 177 ELQTAFIIGFMFFIPFLIVDLVVASVLMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVMG 236 Query: 240 NLVKSF 245 L KSF Sbjct: 237 TLAKSF 242 >gi|269792928|ref|YP_003317832.1| flagellar biosynthetic protein FliP [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100563|gb|ACZ19550.1| flagellar biosynthetic protein FliP [Thermanaerovibrio acidaminovorans DSM 6589] Length = 247 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 87/207 (42%), Positives = 135/207 (65%), Gaps = 4/207 (1%) Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98 ++ + T+LS+AP +++M+T F R ++V +R MG+ +PPN VI SLALF+TF+ Sbjct: 44 TLQIVALMTVLSMAPAIILMLTSFTRILVVLGFVRNAMGLQQMPPNQVIASLALFLTFFT 103 Query: 99 MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 MSP D+ + + P M +I+ A V P FM TRE +LSL + +A Sbjct: 104 MSPVWDQVYKGALVPYMRGEISAQRAFDGVEGPVRAFMLRQTREPELSLMVRLAKMKQPK 163 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 + R+LIP+F+ISEL+ +F++G +I +PF+++DMIV++++M+MGM+MLPP Sbjct: 164 ----NPSEVPTRVLIPAFVISELKTAFQMGVVIFIPFIVVDMIVSSVLMSMGMIMLPPMM 219 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLPFKV+ FV+ DGW L++ +LV SF Sbjct: 220 ISLPFKVLLFVMADGWDLVIASLVSSF 246 >gi|91792694|ref|YP_562345.1| flagellar biosynthesis protein FliP [Shewanella denitrificans OS217] gi|91714696|gb|ABE54622.1| flagellar biosynthetic protein FliP [Shewanella denitrificans OS217] Length = 247 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 87/230 (37%), Positives = 139/230 (60%), Gaps = 6/230 (2%) Query: 18 FAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTG 75 FA+ L V + + V + + T +S P ++IM+T F R I+V SILR Sbjct: 20 FAEGILPAVTVKTGADGSAEYSVTMQILILMTAMSFIPAMVIMLTSFTRIIVVLSILRQA 79 Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVF 135 +G+ P N V+I ++LFMTF++MSP D+ ++P +N +T + + P F Sbjct: 80 LGLQQTPSNQVLIGISLFMTFFIMSPVFDKIYTEAVEPYINETMTLQQSYEVGKLPIKSF 139 Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195 M + R DL F++++ IT + ++IP+F+ SEL+ +F+IGF++ +PF Sbjct: 140 MLSQLRLTDLQTFVEISGYKG----ITSPEEAPMSVIIPAFITSELKTAFQIGFMLFIPF 195 Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 L++D++VA+I+MAMGMMML P +SLPFK++ FVL+DGWSL++ L SF Sbjct: 196 LVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVMGTLANSF 245 >gi|168704086|ref|ZP_02736363.1| flagellar biosynthetic protein FliP [Gemmata obscuriglobus UQM 2246] Length = 224 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 84/227 (37%), Positives = 139/227 (61%), Gaps = 7/227 (3%) Query: 21 SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 L D +N P L+ V+T + + ++ P L+ +TCF R +IV S +R G+G Sbjct: 2 GDLADFVNGPNGLNFQNLSPPVQTALMLGLSALLPAALMTMTCFTRVVIVLSFVRQGLGA 61 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 +VPPNLV+ LALF+T +VM PT + QP + QIT A + + + FM Sbjct: 62 QNVPPNLVLTGLALFITLFVMQPTFAEIDQKAYQPYLQKQITGPQAFKTGTDIYKQFMLR 121 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 TR++DL+LF+ ++ + + K + + ++P+F+ISEL+ +F +GF I LPFL++ Sbjct: 122 QTRKQDLALFLHLSKHT-----VEKAEDAPFLTVVPAFLISELKTAFIMGFCIYLPFLMV 176 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 D++V++++ +MGM+M+PP +IS PFK++ FVL DGW L+ + S+ Sbjct: 177 DLVVSSVLTSMGMVMMPPVTISAPFKILLFVLADGWHLVTYAIALSY 223 >gi|269960157|ref|ZP_06174533.1| flagellar assembly protein [Vibrio harveyi 1DA3] gi|269835128|gb|EEZ89211.1| flagellar assembly protein [Vibrio harveyi 1DA3] Length = 255 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 79/232 (34%), Positives = 128/232 (55%), Gaps = 4/232 (1%) Query: 14 PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73 P + ++ + ++ + T LS P ++M T F R I+V +ILR Sbjct: 27 PTMAADNGLTILSVSDGDTQQEYSVKLQILLLMTALSFLPAFILMATSFTRIIVVLAILR 86 Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133 +G+ PPN V++ +AL +T +M P + +P N +IT A +P Sbjct: 87 QALGLQQSPPNRVLVGIALALTLLIMRPVWTDIHDNAFKPYDNGEITLMQAFSVAEKPVR 146 Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193 FM T + L + +A+ + I + +++P+F+ISEL+ +F+IGF++ + Sbjct: 147 NFMLAQTHQSSLEQMLRIANEPID----QNVEDISFAVVLPAFVISELKTAFQIGFMLFI 202 Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW++ V L SF Sbjct: 203 PFLIIDLVVASVLMAMGMMMLSPLIISLPFKLVVFVLVDGWAMTVGTLSASF 254 >gi|268679749|ref|YP_003304180.1| flagellar biosynthetic protein FliP [Sulfurospirillum deleyianum DSM 6946] gi|268617780|gb|ACZ12145.1| flagellar biosynthetic protein FliP [Sulfurospirillum deleyianum DSM 6946] Length = 238 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 99/241 (41%), Positives = 154/241 (63%), Gaps = 7/241 (2%) Query: 8 ALFLVTPELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64 L L + F ++ V ++ P + + TIL +AP L+ M+T F R Sbjct: 1 MLLLSLTPMAFGADTIPTVNLSLSAPDSPQQLVTSMNLVLVLTILVLAPSLIFMMTSFLR 60 Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124 +IVFS LR +G +PP+ V++SLA+ +TF++M P + S ++ I+P + +++ A Sbjct: 61 LLIVFSFLRQALGTQQMPPSQVMVSLAMILTFFIMEPVMKESYDVAIKPYLAEKMSYQEA 120 Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184 ++ + PF FM NTREKDL+LF + + + + + + +P+FMISEL+ + Sbjct: 121 FEKGSAPFKAFMIRNTREKDLALFFRIRNLENPK----NIEDVPLTVAMPAFMISELKTA 176 Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 FEIGFL+ LPFL+IDM+V++++MAMGMMMLPP ISLPFK++ FVL+DGW+LLV+ LV+S Sbjct: 177 FEIGFLLYLPFLVIDMVVSSVLMAMGMMMLPPAMISLPFKLLIFVLVDGWNLLVQRLVES 236 Query: 245 F 245 F Sbjct: 237 F 237 >gi|325567519|ref|ZP_08144186.1| flagellar biosynthetic protein FliP [Enterococcus casseliflavus ATCC 12755] gi|325158952|gb|EGC71098.1| flagellar biosynthetic protein FliP [Enterococcus casseliflavus ATCC 12755] Length = 254 Score = 195 bits (496), Expect = 5e-48, Method: Composition-based stats. Identities = 101/238 (42%), Positives = 154/238 (64%), Gaps = 6/238 (2%) Query: 11 LVTPELVFAKSS---LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67 L+ P+ FA + + N+ ++ + S+ + TF + T+LS+ P+LLIM+T F R I+ Sbjct: 19 LMLPQTAFALDTEDVSSTINNLLSNGNGSSDTINTFLLLTLLSLLPVLLIMMTSFTRIIM 78 Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127 V S +R+ +G PPN V+I LALF+TF++M P + I+P +I++ A R Sbjct: 79 VLSFVRSSLGTQQNPPNQVLIGLALFLTFFIMKPVYTDVYQQAIEPFDRQEISQAEAFDR 138 Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187 + FM TREKD++LF A + +D + +++P+F+ISELR +F I Sbjct: 139 SEKRIKAFMMVQTREKDIALF---AEADGETEKYHSSDDVPLTVMVPAFIISELRTAFSI 195 Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GFLI +PFLIID++V++I+M+MGMMML P ISLPFK++ FVL+DGW L+VE+L+KSF Sbjct: 196 GFLIFIPFLIIDLVVSSILMSMGMMMLSPIMISLPFKILLFVLVDGWYLIVESLIKSF 253 >gi|330876029|gb|EGH10178.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|331016991|gb|EGH97047.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 250 Score = 195 bits (496), Expect = 5e-48, Method: Composition-based stats. Identities = 93/220 (42%), Positives = 138/220 (62%), Gaps = 4/220 (1%) Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85 + N + ++ I T LS P ++++T F R IIVFSILR +G+ P N Sbjct: 32 LSNGADGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQ 91 Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145 ++ +ALF+T ++M+P DR + +QP + ++T A+ + P FM TR DL Sbjct: 92 ILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKLTAQDAVAKAQVPIKDFMLAQTRTSDL 151 Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205 LFM ++ + TDI D IL+P+F+ISEL+ +F+IGF+I +PFLIID++VA++ Sbjct: 152 ELFMRLS----KRTDIPTPDAAPLTILVPAFVISELKTAFQIGFMIFIPFLIIDLVVASV 207 Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MAMGMMML P ISLPFK++ FVL+DGW+L+V L SF Sbjct: 208 LMAMGMMMLSPLIISLPFKIMLFVLVDGWALIVGTLAGSF 247 >gi|28869176|ref|NP_791795.1| flagellar biosynthetic protein FliP [Pseudomonas syringae pv. tomato str. DC3000] gi|213967547|ref|ZP_03395695.1| flagellar biosynthetic protein FliP [Pseudomonas syringae pv. tomato T1] gi|301382884|ref|ZP_07231302.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. tomato Max13] gi|302061094|ref|ZP_07252635.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. tomato K40] gi|302131290|ref|ZP_07257280.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852416|gb|AAO55490.1| flagellar biosynthetic protein FliP [Pseudomonas syringae pv. tomato str. DC3000] gi|213927848|gb|EEB61395.1| flagellar biosynthetic protein FliP [Pseudomonas syringae pv. tomato T1] Length = 250 Score = 195 bits (496), Expect = 5e-48, Method: Composition-based stats. Identities = 93/220 (42%), Positives = 138/220 (62%), Gaps = 4/220 (1%) Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85 + N + ++ I T LS P ++++T F R IIVFSILR +G+ P N Sbjct: 32 LSNGADGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQ 91 Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145 ++ +ALF+T ++M+P DR + +QP + ++T A+ + P FM TR DL Sbjct: 92 ILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKLTAQDAVAKAQVPIKDFMLAQTRTSDL 151 Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205 LFM ++ + TDI D IL+P+F+ISEL+ +F+IGF+I +PFLIID++VA++ Sbjct: 152 ELFMRLS----KRTDIPTPDAAPLTILVPAFVISELKTAFQIGFMIFIPFLIIDLVVASV 207 Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MAMGMMML P ISLPFK++ FVL+DGW+L+V L SF Sbjct: 208 LMAMGMMMLSPLIISLPFKIMLFVLVDGWALIVGTLAGSF 247 >gi|73532546|dbj|BAE19831.1| flagellar biosynthesis protein [Edwardsiella tarda] Length = 231 Score = 195 bits (496), Expect = 5e-48, Method: Composition-based stats. Identities = 91/212 (42%), Positives = 137/212 (64%), Gaps = 7/212 (3%) Query: 24 HDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 +++ P +W V+T T LS P L+++T F R IIV +LRT G S Sbjct: 25 PGIISQPLAHGGQSWSLPVQTLVFLTSLSFLPAALLLMTSFTRIIIVLGLLRTP-GHPSA 83 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PPN V++ LALF+TF++MSP LD+ + QP +I+ TA+ R A+P FM TR Sbjct: 84 PPNQVLLGLALFLTFFIMSPVLDKIYQDAYQPFSEQKISMETALDRGAKPLRAFMLRQTR 143 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 E DL+LF +A ++ + + RIL+P+++ SEL+ +F+IGF + +PFLIID++ Sbjct: 144 ETDLALFSRLAKQP----EMQGPEDVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLV 199 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDG 233 VA+++MA+GMMM+PP +ISLPFK++ FVL+DG Sbjct: 200 VASVLMALGMMMVPPATISLPFKLMLFVLVDG 231 >gi|260767960|ref|ZP_05876894.1| flagellar biosynthesis protein FliP [Vibrio furnissii CIP 102972] gi|260615990|gb|EEX41175.1| flagellar biosynthesis protein FliP [Vibrio furnissii CIP 102972] Length = 252 Score = 195 bits (496), Expect = 5e-48, Method: Composition-based stats. Identities = 81/242 (33%), Positives = 130/242 (53%), Gaps = 4/242 (1%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63 + P L ++ + + ++ + T LS P ++M T F Sbjct: 13 LALVLMLCAWPTLAADNGLTLFTVSDGSTQEEYSVKLQILLLMTALSFLPAFILMATSFT 72 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 R I+V +ILR +G+ PPN V++ +AL ++ +M P E +P QIT Sbjct: 73 RIIVVLAILRQALGLQQSPPNRVLVGIALALSLLIMRPVWSEVYEHAFKPYDQGQITLMQ 132 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 A +P FM T++ L + +A+ D I + +++P+F+ISEL+ Sbjct: 133 AFSVAEKPVRNFMLAQTQQSSLEQMLRIANEPLD----QNVDDISFAVVLPAFVISELKT 188 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 +F+IGF++ +PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW++ V L Sbjct: 189 AFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKLVVFVLVDGWAMTVGTLSA 248 Query: 244 SF 245 SF Sbjct: 249 SF 250 >gi|150390469|ref|YP_001320518.1| flagellar biosynthetic protein FliP [Alkaliphilus metalliredigens QYMF] gi|149950331|gb|ABR48859.1| flagellar biosynthetic protein FliP [Alkaliphilus metalliredigens QYMF] Length = 267 Score = 195 bits (496), Expect = 5e-48, Method: Composition-based stats. Identities = 92/207 (44%), Positives = 139/207 (67%), Gaps = 4/207 (1%) Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98 ++ + TILSIAP +LIM+T F R +IV S LR + PP +II LALF+TF+ Sbjct: 64 SLQILFLLTILSIAPAILIMMTSFTRIVIVLSFLRNAIATQQTPPTQIIIGLALFLTFFT 123 Query: 99 MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 M+P +QP + ++ + A++R EP FM TREKDL+LF+++++S Sbjct: 124 MAPIATDINTNALQPYLAEELGQEEALERAMEPIREFMFRQTREKDLALFIEVSNSEMP- 182 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 T+ I LIP+F+ISEL+ +F++GF++ +PF++IDM+VA+ +MAMGMMMLPP Sbjct: 183 ---TEVADIATSTLIPAFIISELKTAFQMGFILFIPFIVIDMVVASTLMAMGMMMLPPAM 239 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLPFK++ F+++DGW++LV L+ SF Sbjct: 240 ISLPFKLLLFIMVDGWNILVRALIMSF 266 >gi|239909255|ref|YP_002955997.1| flagellar biosynthetic protein FliP [Desulfovibrio magneticus RS-1] gi|239799122|dbj|BAH78111.1| flagellar biosynthetic protein FliP [Desulfovibrio magneticus RS-1] Length = 253 Score = 195 bits (496), Expect = 5e-48, Method: Composition-based stats. Identities = 97/248 (39%), Positives = 148/248 (59%), Gaps = 7/248 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI---VRTFGIFTILSIAPILLI 57 ++ FF L P L A+ + +++ A + + + T+LS+AP ++ Sbjct: 7 LLALAFFGALLALPTLALAQDAPSLTLSLAAGQTSPERVSTLLEILFALTVLSLAPSFVL 66 Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 VT F R I+VFS LR MG+ VPP ++ SLA+F+T +M PT + +QP MN Sbjct: 67 TVTSFTRIIVVFSFLRQAMGVQQVPPTQILASLAIFLTAVIMYPTGKAINDNALQPYMNE 126 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177 +I T A+++ P F+ +TREKDLS+F + + +L FM Sbjct: 127 EIGFTEALKKAEAPLREFLFKHTREKDLSVFYTITKMERPKDKG----EVPTIMLAAGFM 182 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 ISEL+ +F IGFLI +PFLI+DM++++I++AMGMMMLPP +I++PFK++ FVL+DGW L+ Sbjct: 183 ISELKTAFTIGFLIYIPFLILDMVISSILLAMGMMMLPPATIAMPFKLLLFVLVDGWGLI 242 Query: 238 VENLVKSF 245 V +LV SF Sbjct: 243 VASLVNSF 250 >gi|330964683|gb|EGH64943.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. actinidiae str. M302091] Length = 250 Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 93/220 (42%), Positives = 138/220 (62%), Gaps = 4/220 (1%) Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85 + N + ++ I T LS P ++++T F R IIVFSILR +G+ P N Sbjct: 32 LSNGADGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQ 91 Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145 ++ +ALF+T ++M+P DR + +QP + ++T A+ + P FM TR DL Sbjct: 92 ILTGMALFLTMFIMAPVFDRVNQDALQPYLAGKLTAQDAVAKAQVPIKDFMLAQTRTSDL 151 Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205 LFM ++ + TDI D IL+P+F+ISEL+ +F+IGF+I +PFLIID++VA++ Sbjct: 152 ELFMRLS----KRTDIPTPDAAPLTILVPAFVISELKTAFQIGFMIFIPFLIIDLVVASV 207 Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MAMGMMML P ISLPFK++ FVL+DGW+L+V L SF Sbjct: 208 LMAMGMMMLSPLIISLPFKIMLFVLVDGWALIVGTLAGSF 247 >gi|167623389|ref|YP_001673683.1| flagellar biosynthesis protein FliP [Shewanella halifaxensis HAW-EB4] gi|167353411|gb|ABZ76024.1| flagellar biosynthetic protein FliP [Shewanella halifaxensis HAW-EB4] Length = 249 Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 142/247 (57%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIM 58 ++ AL + P + L V + + V + + T LS P ++IM Sbjct: 5 ILLLAGLALTFMAPTALAENGILPAVTVSTGADGSTQYSVTMQILLLMTALSFIPAMVIM 64 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R I+V SILR +G+ P N V+I +++FMTF++MSP D+ +QP + Sbjct: 65 LTSFTRIIVVLSILRQAIGLQQTPSNQVLIGISMFMTFFIMSPVFDKIYVQAVQPYIEQG 124 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 + A P FM TR DL+ F++++ +I + + ++IP+F+ Sbjct: 125 MPLQDAFTTGQGPLKDFMLAQTRNSDLNTFIEISG----YQNINEPEDAPMTVIIPAFIT 180 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK++ FVL+DGWSL++ Sbjct: 181 SELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVM 240 Query: 239 ENLVKSF 245 L SF Sbjct: 241 GTLANSF 247 >gi|119476307|ref|ZP_01616658.1| flagellar biosynthesis protein [marine gamma proteobacterium HTCC2143] gi|119450171|gb|EAW31406.1| flagellar biosynthesis protein [marine gamma proteobacterium HTCC2143] Length = 270 Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 88/220 (40%), Positives = 143/220 (65%), Gaps = 4/220 (1%) Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85 V + T ++ + T+L++ P L+M+T F R I+V +ILR +G+ S P N Sbjct: 53 VTTNASGGQDYTVTIQILAVMTVLTLLPSFLMMMTAFTRVIVVLAILRQAIGLQSTPSNQ 112 Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145 +I+ LA+F+T ++M P +++ +QP MN +IT AI ++PF FM + TRE DL Sbjct: 113 IILGLAIFLTIFIMLPVFEQANTQALQPYMNEKITSLEAIDAASKPFHEFMLSQTRETDL 172 Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205 LFM ++++ T I + + +L P+F+ SEL+ +F++GF++ +PFL+ID++VA++ Sbjct: 173 DLFMRISNT----TGIQTPEETPFFVLAPAFLTSELKTAFQMGFVLFIPFLVIDLVVASV 228 Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MAMGMMML P ISLPFK++ FVL+DGW ++V L S+ Sbjct: 229 LMAMGMMMLSPIIISLPFKIMLFVLVDGWVMIVGTLAASY 268 >gi|303246798|ref|ZP_07333075.1| flagellar biosynthetic protein FliP [Desulfovibrio fructosovorans JJ] gi|302491815|gb|EFL51695.1| flagellar biosynthetic protein FliP [Desulfovibrio fructosovorans JJ] Length = 252 Score = 195 bits (495), Expect = 6e-48, Method: Composition-based stats. Identities = 89/209 (42%), Positives = 135/209 (64%), Gaps = 4/209 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + ++ T+LS+AP ++ VT F R IIVFS LR MG+ VPP+ ++ SLA+F+T Sbjct: 46 STLLEILFALTVLSLAPAFVLTVTSFTRIIIVFSFLRQAMGVPQVPPSQILASLAIFLTC 105 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 +M PT + +QP +N QI T A+++ P F+ +TREKDLS+F + Sbjct: 106 VIMYPTGKAINDDALQPYLNEQIGFTEALKKAETPLREFLFKHTREKDLSVFYTVTKMER 165 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 + +L F+ISEL+ +F IGFLI +PFLI+DM++++I++AMGMMMLPP Sbjct: 166 PKDKA----EVPTTMLAAGFIISELKTAFTIGFLIYIPFLILDMVISSILLAMGMMMLPP 221 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +I++PFK++ FVL+DGW L+V ++V SF Sbjct: 222 ATIAMPFKLLLFVLVDGWGLMVGSIVNSF 250 >gi|317129193|ref|YP_004095475.1| flagellar biosynthetic protein FliP [Bacillus cellulosilyticus DSM 2522] gi|315474141|gb|ADU30744.1| flagellar biosynthetic protein FliP [Bacillus cellulosilyticus DSM 2522] Length = 222 Score = 195 bits (495), Expect = 6e-48, Method: Composition-based stats. Identities = 91/195 (46%), Positives = 134/195 (68%), Gaps = 4/195 (2%) Query: 51 IAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMG 110 IAP +LI++TCF R ++V S +R+G+ +PPN V++ LALF+TF++M+P E Sbjct: 32 IAPSILILMTCFTRIVVVLSFVRSGLATQQMPPNQVLVGLALFITFFIMAPVFSEVNEQA 91 Query: 111 IQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYR 170 +QP+ ++T+ A A P FM +TREKDL+LFM A T D I Sbjct: 92 LQPMFAGEMTQEEAFDAAALPMKEFMAQHTREKDLALFMGYAGLPRPET----LDDIPLT 147 Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230 L+P+F ISEL+ +F+IGF+I +PFL+IDM+VA+++M+MGMMMLPP I+LPFK++ FV+ Sbjct: 148 ALVPAFAISELKTAFQIGFMIFIPFLVIDMVVASVLMSMGMMMLPPVMIALPFKILLFVM 207 Query: 231 IDGWSLLVENLVKSF 245 +DGW L+V +L+ SF Sbjct: 208 VDGWHLVVRSLLLSF 222 >gi|315453643|ref|YP_004073913.1| flagellar biosynthesis protein [Helicobacter felis ATCC 49179] gi|315132695|emb|CBY83323.1| flagellar biosynthesis protein [Helicobacter felis ATCC 49179] Length = 252 Score = 195 bits (495), Expect = 6e-48, Method: Composition-based stats. Identities = 98/224 (43%), Positives = 151/224 (67%), Gaps = 4/224 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 ++ ++ P + + + T+L +AP L++ +T F R I+VFS LRT +G Sbjct: 29 TIDLSLSAPHTPTQLVTTLNVVLVLTLLVLAPSLVLTMTSFIRLIVVFSFLRTALGTQQT 88 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PP +++SLAL +TF++M PT +S ++ I+P + +I+ T A +R PF FM NTR Sbjct: 89 PPTQILVSLALILTFFIMEPTAKKSYKIAIKPYLAEKISYTQAFERGVVPFKEFMLKNTR 148 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 EKDL+LF + + + + + +L+P+FMISEL+ +F+IGFL+ LPFL+IDM+ Sbjct: 149 EKDLALFFRIRNLENPK----DVNSVPLSVLVPAFMISELKTAFQIGFLLYLPFLVIDMV 204 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 V++I+MAMGMMMLPP ISLPFK++ F+L+DG++LL+ENLV SF Sbjct: 205 VSSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLIENLVASF 248 >gi|315127309|ref|YP_004069312.1| flagellar biosynthesis protein FliP [Pseudoalteromonas sp. SM9913] gi|315015823|gb|ADT69161.1| flagellar biosynthesis protein FliP [Pseudoalteromonas sp. SM9913] Length = 246 Score = 195 bits (495), Expect = 6e-48, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 144/246 (58%), Gaps = 5/246 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSI-STWIVRTFGIFTILSIAPILLIMV 59 M ++ F +V V A+ + AD + + ++ I T +S P +IM+ Sbjct: 1 MTKWLLFLFAMVFVPGVNAEGIDALTITTNADGTQDYSVTLQVLAIMTAMSFIPAAIIMM 60 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R I+V +ILR +G+ P N V++ ++LF++ ++M+P ++ E I+P ++ Q+ Sbjct: 61 TSFTRIIVVLAILRQAIGLQQTPSNQVLLGMSLFLSIFIMAPIYEQINERAIEPYLSEQV 120 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 T A+ EP FM + R KDL F +A + + +LIP+F+ S Sbjct: 121 TSLEALDLAKEPMKAFMLSQVRIKDLETFAKIAG----YDQLDSPEATPMVVLIPAFVTS 176 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+ +F IGF+ +PFLI+D++VA+++MAMGMMML P +SLPFK++ FVL+DGWSL++ Sbjct: 177 ELQTAFIIGFMFFIPFLIVDLVVASVLMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVMG 236 Query: 240 NLVKSF 245 L KSF Sbjct: 237 TLAKSF 242 >gi|32490799|ref|NP_871053.1| flagellar biosynthesis protein FliP [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166005|dbj|BAC24196.1| fliP [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 263 Score = 195 bits (495), Expect = 6e-48, Method: Composition-based stats. Identities = 89/206 (43%), Positives = 137/206 (66%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T T L+ P L+++++ F R IIV SILR +G + PPN ++I L+L +T ++M Sbjct: 59 VQTLLFLTSLTFIPALILLMSSFTRIIIVLSILRNALGTPTAPPNQILIGLSLCLTIFIM 118 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP L++ P N+I AI +P FM + TREKDL+ + ++ + Sbjct: 119 SPVLEKIYYDSYLPFYQNKINLQKAIIYAEQPIKEFMISQTREKDLAFYSKIS----KTN 174 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 +I + +ILIP+F+ SEL+ +F+IGF + +PFLIIDM+VA+I+MA+GMMMLPPT++ Sbjct: 175 EINSPKEVPIKILIPAFVTSELKTAFQIGFTLFIPFLIIDMVVASILMALGMMMLPPTTV 234 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FV+ DGW +L+ +LV+SF Sbjct: 235 SLPFKLMLFVMADGWQILLGSLVQSF 260 >gi|302387779|ref|YP_003823601.1| flagellar biosynthetic protein FliP [Clostridium saccharolyticum WM1] gi|302198407|gb|ADL05978.1| flagellar biosynthetic protein FliP [Clostridium saccharolyticum WM1] Length = 220 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 84/212 (39%), Positives = 133/212 (62%), Gaps = 4/212 (1%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 + F I TI+S+ P +L+M+T F R +I+ S R MG+ PPN+V++ +ALF Sbjct: 11 GGRVPTLELFLILTIISLLPSILVMMTSFTRIVIILSFTRNAMGIQQTPPNMVLVGIALF 70 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 +T ++M P + QP + +I++ A++R P FM T + L+LF DM++ Sbjct: 71 LTLFIMDPVIKDVNTNAYQPYIKEEISQGEALKRAQVPMKRFMLKQTEKTTLTLFTDMSN 130 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 + + + ++IPSFM SEL+R+F GF+I LPF+++D++V++ +M+MGM+M Sbjct: 131 TDMPE----NIEDLPMTVVIPSFMTSELKRAFTAGFMIFLPFMLVDIVVSSTLMSMGMVM 186 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LPP ISLPFK++ FV ++GW LL NLVKSF Sbjct: 187 LPPAMISLPFKLLLFVTVNGWELLFTNLVKSF 218 >gi|220913717|ref|YP_002489026.1| flagellar biosynthetic protein FliP [Arthrobacter chlorophenolicus A6] gi|219860595|gb|ACL40937.1| flagellar biosynthetic protein FliP [Arthrobacter chlorophenolicus A6] Length = 262 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 85/209 (40%), Positives = 131/209 (62%), Gaps = 4/209 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + V T T+LS+AP LL+M+T F + +V ++ R + + S+PPN V+ LALF++ Sbjct: 57 STAVVTLIGITLLSVAPALLLMMTSFTKIFVVLAMTRNALSLPSIPPNQVLAGLALFLSL 116 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 +VM P L +QP +N + A A P FM +TRE+D++L A + Sbjct: 117 FVMWPVLTEINTDAVQPYLNGNLDFNGAFSAGAGPLQQFMLGHTREEDIALMTRAARMPN 176 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 + + LIP+FMISELR +F IGF+I +PFL+ID++V+ +M+MGMMMLPP Sbjct: 177 PENPGA----VPLQTLIPAFMISELRAAFIIGFVIFIPFLVIDLVVSAALMSMGMMMLPP 232 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLPFK++ F+L+DGW L++ +L++S+ Sbjct: 233 VMISLPFKILLFILVDGWGLVITSLIQSY 261 >gi|313682238|ref|YP_004059976.1| flagellar biosynthetic protein flip [Sulfuricurvum kujiense DSM 16994] gi|313155098|gb|ADR33776.1| flagellar biosynthetic protein FliP [Sulfuricurvum kujiense DSM 16994] Length = 244 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 98/243 (40%), Positives = 152/243 (62%), Gaps = 4/243 (1%) Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61 + + F + L+ +++ + P + + + T+L +AP L++++T Sbjct: 4 LAFFLFMIPLMLWGADPQVPAMNFNLTAPETPAEVVSSLNVLLVLTVLFLAPSLVLVMTT 63 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F RF+IVF LR +G VPP +++ LAL +T +VM P ++ + GI+P +IT Sbjct: 64 FTRFVIVFGFLRQALGTQQVPPTQLLVMLALILTVFVMEPVATKAYDEGIKPYSEEKITY 123 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 A ++ EPF FM NTREKDL+LF+ + H + + I+IP+FMISEL Sbjct: 124 DEAFEKTTEPFKNFMVRNTREKDLALFLRIRHMQNP----QSIKEVPLTIVIPAFMISEL 179 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 + +FEIGFL+ LPFL+IDM+VA+I+M+MGMMMLPP IS+PFK++ FV++DGW+LL+ NL Sbjct: 180 KTAFEIGFLLFLPFLVIDMVVASILMSMGMMMLPPVMISMPFKILVFVMVDGWNLLIGNL 239 Query: 242 VKS 244 + S Sbjct: 240 IAS 242 >gi|163781853|ref|ZP_02176853.1| flagellar biosynthetic protein FliP [Hydrogenivirga sp. 128-5-R1-1] gi|159883073|gb|EDP76577.1| flagellar biosynthetic protein FliP [Hydrogenivirga sp. 128-5-R1-1] Length = 225 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 87/194 (44%), Positives = 128/194 (65%), Gaps = 1/194 (0%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +LIM T F R ++V S+LR +G+ VPPN VI+SLALF+TF++M P + +Q Sbjct: 31 PSILIMTTSFIRIVVVLSVLRQALGVPQVPPNQVIVSLALFLTFFIMKPVFENINTNALQ 90 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH-SSHRNTDITKNDHIEYRI 171 P M QI++ RV FM TR+ + +FM++A I K I I Sbjct: 91 PYMKEQISDQEFFNRVTGSLKGFMLKQTRKDTVEVFMEVAKLKKEEREKIRKPSDIPLSI 150 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 LIP+FM+SEL +FEI FL+ +PFLI+D++VA+I+++MG++M+PP ISLPFK++ FVL Sbjct: 151 LIPAFMVSELTTAFEIVFLLYIPFLIVDIVVASILISMGIIMIPPQIISLPFKIMLFVLA 210 Query: 232 DGWSLLVENLVKSF 245 +GW L+V +LV+S+ Sbjct: 211 NGWELVVLSLVRSY 224 >gi|260779323|ref|ZP_05888215.1| flagellar biosynthesis protein FliP [Vibrio coralliilyticus ATCC BAA-450] gi|260605487|gb|EEX31782.1| flagellar biosynthesis protein FliP [Vibrio coralliilyticus ATCC BAA-450] Length = 252 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 83/244 (34%), Positives = 134/244 (54%), Gaps = 4/244 (1%) Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61 I +L P + ++ A + ++ + T LS P ++M T Sbjct: 12 ILIGLVSLLFAFPSVANESGLTILSVSDGATQQEYSVKLQILLLMTALSFLPAFILMATS 71 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F R I+V +ILR +G+ PPN V++ +AL ++ +M P + QP N +IT Sbjct: 72 FTRIIVVLAILRQALGLQQSPPNRVLVGIALALSLLIMRPVWTDIYQNAFQPYDNGEITL 131 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 A +P FM T++ L + +A+ T + I + +++P+F+ISEL Sbjct: 132 MQAFSVAEKPVRNFMLAQTQQTSLEQMLRIANEPLD----TALEDISFAVVLPAFVISEL 187 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 + +F+IGF++ +PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW++ V L Sbjct: 188 KTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKLVVFVLVDGWAMTVGTL 247 Query: 242 VKSF 245 SF Sbjct: 248 SASF 251 >gi|192359973|ref|YP_001982204.1| flagellar biosynthesis protein FliP [Cellvibrio japonicus Ueda107] gi|190686138|gb|ACE83816.1| Flagellar biosynthetic protein fliP [Cellvibrio japonicus Ueda107] Length = 279 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 95/220 (43%), Positives = 143/220 (65%), Gaps = 4/220 (1%) Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85 + P T ++ + T LS P +L+M+T F R IIVFSILR +G+ P N Sbjct: 62 IQTNPDGTQEYTVTLQILALMTALSFLPAILMMMTSFTRIIIVFSILRQALGLQQSPSNQ 121 Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145 ++I LALF+T ++M P D++ +QP +N QI+ A+ + A PF FM TRE D+ Sbjct: 122 ILIGLALFLTLFIMKPVFDQANHDALQPYINGQISAQEALAKTAAPFHRFMLAQTRESDI 181 Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205 LF+ +A ++ I + I + IL P+F+ISEL+ +F+IGF+I +PFLIID++V+++ Sbjct: 182 LLFVGIA----KHPPIATPEDIPFTILAPAFIISELKTAFQIGFIIFIPFLIIDIVVSSV 237 Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MAMGMMML P ISLPFK++ FVL+DGW+++V L S+ Sbjct: 238 LMAMGMMMLSPLIISLPFKIMLFVLVDGWAMIVGTLAASY 277 >gi|224373184|ref|YP_002607556.1| flagellar biosynthesis protein FliP [Nautilia profundicola AmH] gi|223589473|gb|ACM93209.1| flagellar biosynthetic protein FliP [Nautilia profundicola AmH] Length = 242 Score = 194 bits (494), Expect = 8e-48, Method: Composition-based stats. Identities = 97/245 (39%), Positives = 149/245 (60%), Gaps = 4/245 (1%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 M + + + +++ + P ++ + T+L +AP +++++T Sbjct: 1 MKKLFLILIPIFIFAAAPQIPTVNLSLTAPETPKQLVSVLNITILLTLLVLAPSIILVMT 60 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R ++VF LR +G PP +++SLAL +TF++M P ++ GI+P M +I Sbjct: 61 SFVRLLVVFGFLRQALGTPQSPPTTLLVSLALVLTFFIMEPYAKQAYNTGIKPYMEEKIG 120 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A +PF FM NTREKDL+LF + H + T D + IL+P+FM+SE Sbjct: 121 YDQAFNNAVKPFKKFMIKNTREKDLALFFRIRHLPNPKT----IDDVPLTILVPAFMLSE 176 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +FEIGFLI LPFLIIDM+V++I+M++GMMMLPP ISLPFK++ FVL+DGW+L+V Sbjct: 177 LKTAFEIGFLIFLPFLIIDMVVSSILMSLGMMMLPPVMISLPFKILVFVLVDGWNLIVMG 236 Query: 241 LVKSF 245 LV+SF Sbjct: 237 LVQSF 241 >gi|323493116|ref|ZP_08098247.1| flagellar biosynthesis protein FliP [Vibrio brasiliensis LMG 20546] gi|323312587|gb|EGA65720.1| flagellar biosynthesis protein FliP [Vibrio brasiliensis LMG 20546] Length = 252 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 83/245 (33%), Positives = 134/245 (54%), Gaps = 4/245 (1%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 ++ + L L P ++ A + ++ + T LS P ++M T Sbjct: 11 LVLFTASVLLLSFPSFASESGLTILSVSDGASEQEYSVKLQILLLMTALSFLPAFILMAT 70 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R I+V +ILR +G+ PPN V++ +AL ++ +M P QP N +IT Sbjct: 71 SFTRIIVVLAILRQALGLQQSPPNRVLVGIALALSLLIMRPVWTDIYHNAFQPYDNGEIT 130 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A +P FM T++ L + +A+ T + I + +++P+F+ISE Sbjct: 131 LMQAFSVAEKPVRNFMLAQTQQTSLEQMLRIANEPLD----TSVEDISFAVVLPAFVISE 186 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +F+IGF++ +PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW++ V Sbjct: 187 LKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKLVVFVLVDGWAMTVGT 246 Query: 241 LVKSF 245 L SF Sbjct: 247 LSASF 251 >gi|320354332|ref|YP_004195671.1| flagellar biosynthetic protein FliP [Desulfobulbus propionicus DSM 2032] gi|320122834|gb|ADW18380.1| flagellar biosynthetic protein FliP [Desulfobulbus propionicus DSM 2032] Length = 246 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 94/224 (41%), Positives = 149/224 (66%), Gaps = 4/224 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 +L + A + + ++ + TIL++AP +L+M T F R +IV S +R MG + Sbjct: 26 TLSLGIKEAATPAEVSTALQALLVLTILTVAPAILLMTTAFTRIVIVLSFVRQAMGTQNT 85 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PPN V++ LALF+TF+VM+P+L+ + +QP + +IT+ A++R E FM + + Sbjct: 86 PPNQVLLGLALFLTFFVMAPSLNAINDQALQPYIQEKITQQQALERSMEVMRDFMFSQVQ 145 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 E +L LF+D+ + ILIP+FM+SEL+R+F++GF+I +PFL+IDM+ Sbjct: 146 ESELQLFIDITKEEQPADKKA----VSSSILIPAFMLSELKRAFQMGFMIYVPFLVIDML 201 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 V++++M+MGMMMLPP ISLPFK++ FVL+DGW L+V +L+KSF Sbjct: 202 VSSVLMSMGMMMLPPIVISLPFKLLLFVLVDGWQLVVGSLMKSF 245 >gi|254438171|ref|ZP_05051665.1| flagellar biosynthetic protein FliP [Octadecabacter antarcticus 307] gi|198253617|gb|EDY77931.1| flagellar biosynthetic protein FliP [Octadecabacter antarcticus 307] Length = 258 Score = 194 bits (493), Expect = 9e-48, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 148/247 (59%), Gaps = 8/247 (3%) Query: 4 YCFFALFLVTPELVFAKSSLH----DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 A +V V+A+ ++ + + ++ + T+L+I P L+ V Sbjct: 15 CVILAFCIVPFGSVYAQDGGGLPALNISTGADGETTYSLSLQILALMTVLTILPSFLLGV 74 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R IIV SILR +G PPN V++S+ALF+TFYVM+PT + I P + + Sbjct: 75 TAFTRIIIVLSILRQALGTQQTPPNQVLLSIALFLTFYVMAPTFEDIYNNAISPYLAGDL 134 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 AI+ A F+ NTRE +L++F +MA + N+ + Y +L+P+F+ S Sbjct: 135 PPVAAIEGAAGILSEFLVVNTREAELAMFAEMAG----DEPYASNEDVPYTVLLPAFITS 190 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+ +F+IGFL+ LPFL+ID+++A+I+M++GMMML P ++LPFK++ FVL+DGW++ + Sbjct: 191 ELKTAFQIGFLLFLPFLVIDLVIASILMSLGMMMLSPMLVALPFKLLLFVLVDGWAMTIG 250 Query: 240 NLVKSFI 246 ++ +++ Sbjct: 251 SIASTYV 257 >gi|153831725|ref|ZP_01984392.1| flagellar biosynthetic protein FliP [Vibrio harveyi HY01] gi|148872235|gb|EDL71052.1| flagellar biosynthetic protein FliP [Vibrio harveyi HY01] Length = 259 Score = 194 bits (493), Expect = 9e-48, Method: Composition-based stats. Identities = 81/245 (33%), Positives = 131/245 (53%), Gaps = 4/245 (1%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 M+ L P + ++ + ++ + T LS P ++M T Sbjct: 18 MVIALLGLLLFALPTMAADNGLTILSVSDGDTQQEYSVKLQILLLMTALSFLPAFILMAT 77 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R I+V +ILR +G+ PPN V++ +AL +T +M P + +P N +IT Sbjct: 78 SFTRIIVVLAILRQALGLQQSPPNRVLVGIALALTLLIMRPVWTDIHDNAFKPYDNGEIT 137 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A +P FM T + L + +A+ + I + +++P+F+ISE Sbjct: 138 LMQAFSVAEKPVRNFMLAQTHQSSLEQMLRIANEPID----QNVEDISFAVVLPAFVISE 193 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +F+IGF++ +PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW++ V Sbjct: 194 LKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKLVVFVLVDGWAMTVGT 253 Query: 241 LVKSF 245 L SF Sbjct: 254 LSASF 258 >gi|34558376|ref|NP_908191.1| flagellar biosynthesis protein FliP [Wolinella succinogenes DSM 1740] gi|34484095|emb|CAE11091.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Wolinella succinogenes] Length = 247 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 100/224 (44%), Positives = 149/224 (66%), Gaps = 4/224 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 +++ + P D + + T+L +AP L++++T F R IIVFS LRT MG Sbjct: 27 TVNLSIGAPTDPGDLVSTLNIVVVLTLLVLAPSLVLVMTSFTRLIIVFSFLRTAMGTQQS 86 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PP +++SLA+ +TF++M P +S E+GI+P + +I A + PF FM NTR Sbjct: 87 PPTQLLVSLAMVLTFFIMEPIAKQSYEIGIKPYLAKEIPYDVAFVKSVGPFKEFMIRNTR 146 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 EKDL+LF + + T + I ++IP+FMISE++ +F+IGFLI LPFL+IDM+ Sbjct: 147 EKDLALFYRIRGMENPQT----IEDIPLTMVIPAFMISEMKTAFQIGFLIYLPFLVIDMV 202 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +++I+MAMGMMMLPP ISLPFK++ FVL+DG++LLV +LV+SF Sbjct: 203 ISSILMAMGMMMLPPVMISLPFKILVFVLVDGFNLLVGSLVESF 246 >gi|311695203|gb|ADP98076.1| flagellar biosynthesis protein FliP [marine bacterium HP15] Length = 258 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 88/232 (37%), Positives = 145/232 (62%), Gaps = 5/232 (2%) Query: 14 PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73 P + + + ++ + T L+ P +L+M+T F R I+VF+ILR Sbjct: 30 PSGIPGIPAFTVTPGEGEGAQEYSVTLQILALMTALTFLPAMLMMMTSFTRIIVVFAILR 89 Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133 +G+ S P N +++ LALF++ ++M P L+ + + +QP M ++T A++ ++PF Sbjct: 90 QAIGLQSTPSNQILLGLALFLSIFIMKPVLEEANRVALQPYMQEEVTSLEAVELASQPFR 149 Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193 FM TRE DL+LFM ++ +T + + IL+P+F+ SEL+ +F+IGF++ + Sbjct: 150 KFMLEQTRESDLALFMRIS-----DTQYETPQDVSFWILMPAFVTSELKTAFQIGFILFI 204 Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 PFLIIDM+VA+++MAMGMMML P ISLPFK++ FVL+DGW+L++ L S+ Sbjct: 205 PFLIIDMVVASVLMAMGMMMLSPIIISLPFKIMLFVLVDGWALIMGTLAASY 256 >gi|149193956|ref|ZP_01871054.1| flagellar biosynthesis protein P [Caminibacter mediatlanticus TB-2] gi|149135909|gb|EDM24387.1| flagellar biosynthesis protein P [Caminibacter mediatlanticus TB-2] Length = 243 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 101/246 (41%), Positives = 151/246 (61%), Gaps = 5/246 (2%) Query: 1 MIRYCFFALFLVTPELVFAK-SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 M + F LF + +++ + P + ++ + TIL +AP ++++ Sbjct: 1 MKKILIFFLFCTVIFAATPQIPTVNLSLTAPENPKQLVTVLNIAILMTILVLAPSIVLVA 60 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R ++VF LR +G PP +++SL+L +TF++M P + + GI+P M +I Sbjct: 61 TSFVRLLVVFGFLRQALGTPQSPPTTLLVSLSLVLTFFIMEPYAKEAYKSGIKPYMEQKI 120 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 A R +PF FM NTREKDL+LF + H + T D + IL+P+FMIS Sbjct: 121 GYEEAFNRAVKPFKRFMIKNTREKDLALFFRIRHLPNPKT----IDDVPLSILVPAFMIS 176 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+ +FEIGFLI LPFLIIDM+V++I+M++GMMMLPP ISLPFK++ F+L+DGW+L+V Sbjct: 177 ELKTAFEIGFLIFLPFLIIDMVVSSILMSLGMMMLPPVMISLPFKILVFILVDGWNLIVM 236 Query: 240 NLVKSF 245 LV SF Sbjct: 237 GLVNSF 242 >gi|188025878|ref|ZP_02997695.1| hypothetical protein PROSTU_02049 [Providencia stuartii ATCC 25827] gi|188020828|gb|EDU58868.1| hypothetical protein PROSTU_02049 [Providencia stuartii ATCC 25827] Length = 185 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 89/187 (47%), Positives = 130/187 (69%), Gaps = 4/187 (2%) Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIV +LR +G S PPN V++ LALF+TF+VMSP D++ QP ++ Sbjct: 1 MTSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFVMSPVADQAYREAYQPFSEDK 60 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ TA++R PF FM TRE DL+LF +A +I + + RIL+P+F+ Sbjct: 61 ISLETALERGTAPFRTFMLGQTRESDLALFARIAKVG----EIQEAKDVPMRILVPAFIT 116 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF I +PFLIID++VA+++MA+GMMM+PP ++SLPFK++ FVL+DGW LL+ Sbjct: 117 SELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGWQLLL 176 Query: 239 ENLVKSF 245 +L +SF Sbjct: 177 GSLSQSF 183 >gi|219670147|ref|YP_002460582.1| flagellar biosynthesis protein FliP [Desulfitobacterium hafniense DCB-2] gi|219540407|gb|ACL22146.1| flagellar biosynthetic protein FliP [Desulfitobacterium hafniense DCB-2] Length = 259 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 105/245 (42%), Positives = 159/245 (64%), Gaps = 6/245 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 ++ + + LV + V A D A+ + ST ++ + T++SIAP +L+++T Sbjct: 20 LLFFLIWGGILVNTDSVLAAGLTLDFGTTTAEQTSST--LQILLLLTVISIAPAILVLMT 77 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R IIV S +R +G +PPN V+I L+LF+TF+VM+PT + +QP M NQIT Sbjct: 78 SFTRTIIVLSFVRNALGTQQLPPNQVLIGLSLFLTFFVMAPTWNEINTQALQPYMQNQIT 137 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 + A+Q+ P FM TREKDL+LF+ +A T I +LIP+F+ISE Sbjct: 138 QAEALQQAEAPLRQFMFEQTREKDLTLFVGLARMEQPQTYG----DIPTYVLIPAFVISE 193 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +F++GF I +PF++IDM+VA+++M+MGMMMLPP +SLPFK++ FVL+DGW L+V++ Sbjct: 194 LKTAFQMGFAIFIPFMVIDMLVASVLMSMGMMMLPPMMVSLPFKILLFVLVDGWHLVVQS 253 Query: 241 LVKSF 245 LV SF Sbjct: 254 LVTSF 258 >gi|77359751|ref|YP_339326.1| flagellar biosynthesis protein FliP [Pseudoalteromonas haloplanktis TAC125] gi|76874662|emb|CAI85883.1| flagellar biosynthesis [Pseudoalteromonas haloplanktis TAC125] Length = 246 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 85/242 (35%), Positives = 136/242 (56%), Gaps = 4/242 (1%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63 + L P + + + ++ I T LS P +IM+T F Sbjct: 5 LLLIFVMLFVPNVSAEGIDALTITTNADGTQDYSVTLQVLAIMTALSFIPAAIIMMTSFT 64 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 R I+V +ILR +G+ P N V++ ++LF++ ++M+P + E I+P ++ Q+T Sbjct: 65 RIIVVLAILRQAIGLQQTPSNQVLLGMSLFLSIFIMAPIYQQVNERAIEPYLSEQVTSME 124 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 A++ EP FM + R KDL F +A + + +LIP+F+ SEL+ Sbjct: 125 ALELAKEPMKAFMLSQVRIKDLETFAKIAG----YDQLDSPEATPLIVLIPAFVTSELQT 180 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 +F IGF+ +PFLI+D++VA+++MAMGMMML P +SLPFK++ FVL+DGWSL++ L K Sbjct: 181 AFIIGFMFFIPFLIVDLVVASVLMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVMGTLAK 240 Query: 244 SF 245 SF Sbjct: 241 SF 242 >gi|88813211|ref|ZP_01128451.1| flagellar biosynthesis protein [Nitrococcus mobilis Nb-231] gi|88789533|gb|EAR20660.1| flagellar biosynthesis protein [Nitrococcus mobilis Nb-231] Length = 245 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 98/246 (39%), Positives = 150/246 (60%), Gaps = 6/246 (2%) Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMV 59 +R + L P + A+ + + + + + TW V + + T L++ P L+M+ Sbjct: 1 MRALLMVVLLWVPGVALAQGTGIEAVTVQSAGDGETWSVSLQILAVMTALTLLPAALLMM 60 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R IIV +ILR +G S P N V+I LALF+T +VMSP L + E+ +QP +N + Sbjct: 61 TAFTRIIIVLAILRQAIGTTSTPSNQVLIGLALFLTVFVMSPVLTQINEVALQPYLNEGM 120 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 A++ A P FM TREKD+ LF+++A + + + + L+P+FM S Sbjct: 121 DAEQAVRAAAGPLRAFMLAQTREKDIGLFLNIADAG----PVASPQEVPFSTLVPAFMTS 176 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL +F+IGF++ LPFL+ID++VA+ +M+MGM+ML P ISLPFK++ FVLIDGWSL++ Sbjct: 177 ELETAFQIGFIVFLPFLVIDLVVASTLMSMGMLMLSPMLISLPFKIMLFVLIDGWSLIMG 236 Query: 240 NLVKSF 245 L SF Sbjct: 237 TLAGSF 242 >gi|156976196|ref|YP_001447102.1| flagellar biosynthesis protein FliP [Vibrio harveyi ATCC BAA-1116] gi|156527790|gb|ABU72875.1| hypothetical protein VIBHAR_04967 [Vibrio harveyi ATCC BAA-1116] Length = 255 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 81/245 (33%), Positives = 131/245 (53%), Gaps = 4/245 (1%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 M+ L P + ++ + ++ + T LS P ++M T Sbjct: 14 MVIALLGLLLFALPTMAADNGLTILSVSDGDTQQEYSVKLQILLLMTALSFLPAFILMAT 73 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R I+V +ILR +G+ PPN V++ +AL +T +M P + +P N +IT Sbjct: 74 SFTRIIVVLAILRQALGLQQSPPNRVLVGIALALTLLIMRPVWTDIHDNAFKPYDNGEIT 133 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A +P FM T + L + +A+ + I + +++P+F+ISE Sbjct: 134 LMQAFSVAEKPVRNFMLAQTHQSSLEQMLRIANEPID----QNVEDISFAVVLPAFVISE 189 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +F+IGF++ +PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW++ V Sbjct: 190 LKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKLVVFVLVDGWAMTVGT 249 Query: 241 LVKSF 245 L SF Sbjct: 250 LSASF 254 >gi|256833225|ref|YP_003161952.1| flagellar biosynthetic protein FliP [Jonesia denitrificans DSM 20603] gi|256686756|gb|ACV09649.1| flagellar biosynthetic protein FliP [Jonesia denitrificans DSM 20603] Length = 276 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 88/235 (37%), Positives = 140/235 (59%), Gaps = 4/235 (1%) Query: 11 LVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70 LV P A ++I T + T+LS+AP LL+++T F + ++V S Sbjct: 45 LVDPADPAAPVDDGISIDIGGGGDGPTSSIVVLLGITLLSVAPSLLLLMTSFTKILVVLS 104 Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130 I R +G+ SVPPN V+ +ALF++ ++M P L ++ +QP + + A+ + + Sbjct: 105 ITRNALGLQSVPPNQVLAGIALFLSIFIMGPVLTSINDIAVQPFLAGDLDFAGALDQGSG 164 Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190 P FM +TRE D++L A + + + LIP+F++SELR +F IGF+ Sbjct: 165 PLRDFMLAHTRESDIALITRAAEAENP----ADPQSVPLMTLIPAFLLSELRAAFIIGFV 220 Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 I LPFL+ID++++ +M++GMMMLPP ISLPFK++ FVL+DGWSL+V L+ S+ Sbjct: 221 IFLPFLVIDLVISASLMSLGMMMLPPIIISLPFKLLLFVLVDGWSLIVTALIGSY 275 >gi|258511388|ref|YP_003184822.1| flagellar biosynthetic protein FliP [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478114|gb|ACV58433.1| flagellar biosynthetic protein FliP [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 272 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 97/249 (38%), Positives = 151/249 (60%), Gaps = 7/249 (2%) Query: 4 YCFFALFLVTPELVFAKSSLHD-------VMNIPADLSISTWIVRTFGIFTILSIAPILL 56 + + P V A++S V + + V+ + T L++AP L Sbjct: 22 WMAVFIMCFHPSFVHAQTSPSAPAIPGVSVSVGGSGPTSVANTVKIVLLLTALTLAPAAL 81 Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116 I++TCF R I+V S +R + + + PPN V++ LALF+T +VM PTL ++ +QP + Sbjct: 82 ILMTCFTRVIVVLSFVRNALSLQTSPPNQVLVGLALFITLFVMQPTLQQANTQALQPYLR 141 Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176 QI++T AI+R PF VFM TR +DL LF+ H + + I L+P+F Sbjct: 142 GQISQTAAIERAEAPFKVFMAKQTRAQDLELFLAYRHETLTAEMERHPEAIAMSALVPAF 201 Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236 +SEL+ +F+IGF+I LPFL+ID++V+T +M+MGMMMLPP ISLPFKV+ FV+++GW L Sbjct: 202 TLSELQTAFQIGFMIYLPFLVIDLVVSTTLMSMGMMMLPPVMISLPFKVLLFVMVNGWYL 261 Query: 237 LVENLVKSF 245 +V++L+ + Sbjct: 262 VVKSLLVGY 270 >gi|163732490|ref|ZP_02139935.1| flagellar biosynthesis protein P [Roseobacter litoralis Och 149] gi|161393850|gb|EDQ18174.1| flagellar biosynthesis protein P [Roseobacter litoralis Och 149] Length = 243 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 105/245 (42%), Positives = 152/245 (62%), Gaps = 3/245 (1%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 M R A+FL + + +++ D S+S ++ F + T+LS+AP L IM+T Sbjct: 1 MTRVVLLAVFLTGVFIPSVSFAQDLSISLGDDGSLSARTIQLFILITVLSLAPGLAIMIT 60 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 CFP + V SILR +G+ PPN++I+SLALF+T+++M P + + GIQPL +N I Sbjct: 61 CFPFLVTVLSILRQAIGLQQSPPNMLIVSLALFLTYFIMEPVFQAAWQNGIQPLTDNAID 120 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 TA R EPF FM D F MA D T +L+PSF++SE Sbjct: 121 AETAFVRTLEPFRSFMAARL---DPDTFFAMAELRSETIDATPTAEAPLSVLVPSFLLSE 177 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 + R+F+IGFL+ LPFLIID++VA ++M+MGMMM+PP +SLPFK+ FFVL DGW+L+ + Sbjct: 178 ISRAFQIGFLVFLPFLIIDLVVAAVLMSMGMMMVPPVIVSLPFKLAFFVLADGWNLIAGS 237 Query: 241 LVKSF 245 LV+S+ Sbjct: 238 LVQSY 242 >gi|152997437|ref|YP_001342272.1| flagellar biosynthesis protein FliP [Marinomonas sp. MWYL1] gi|150838361|gb|ABR72337.1| flagellar biosynthetic protein FliP [Marinomonas sp. MWYL1] Length = 245 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 99/247 (40%), Positives = 156/247 (63%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSIS--TWIVRTFGIFTILSIAPILLIM 58 MIR+ L LV P +A+ L V + T ++ I T L++ P L+M Sbjct: 1 MIRFVSL-LLLVFPAFSWAEVGLPAVKVVTNADGSQDYTVSLQILFIMTALTLLPAALMM 59 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R I+V +ILR +G+ P N ++I +ALF+T ++M+PTLDR E+ +QP + + Sbjct: 60 MTAFTRIIVVLAILRQAIGLQQTPSNQIMIGMALFLTLFIMTPTLDRVNEVALQPYLKEE 119 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 +T A++ + P FM TRE D++LF+ +A + I + + + IL+P+F+ Sbjct: 120 MTSIQAVEAASVPVRDFMLAQTREDDIALFVKLAG---KEGTIQSMETLPFTILMPAFVT 176 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF+I +PFLI+DM+VA+++MAMGMMML P ISLPFK++ FV++DGWS+++ Sbjct: 177 SELKTAFQIGFMIFIPFLIVDMVVASVLMAMGMMMLSPIIISLPFKIMLFVMVDGWSMIM 236 Query: 239 ENLVKSF 245 L SF Sbjct: 237 GTLAASF 243 >gi|157959919|ref|YP_001499953.1| flagellar biosynthesis protein FliP [Shewanella pealeana ATCC 700345] gi|157844919|gb|ABV85418.1| flagellar biosynthetic protein FliP [Shewanella pealeana ATCC 700345] Length = 242 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 89/245 (36%), Positives = 136/245 (55%), Gaps = 4/245 (1%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 M R L + +N A+ + + + T+LS P +L+M+T Sbjct: 1 MWRVLLILLLGFSSTAYANDGLTLFTLNDGAESESVSVKLEILALMTVLSFLPAMLMMLT 60 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R I+V ILR +G+ PPN V+I +AL MT ++M P + E P I Sbjct: 61 SFTRIIVVLGILRQALGLQQSPPNKVLIGIALVMTIFIMRPVGEEIYEKAFLPYDQGIIE 120 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A++R +P FM TRE DL + +A + I + +L+P++++SE Sbjct: 121 LPEAVERGEKPLRQFMLAQTRETDLEQMLKIADEP----TTLTAEEIPFFVLMPAYVLSE 176 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +F+IGFL+ LPFL+ID++VA+++M+MGMMML P ISLPFK++ FVL+DGWS+ V Sbjct: 177 LKTAFQIGFLLFLPFLVIDLVVASVLMSMGMMMLSPLIISLPFKLMVFVLVDGWSMTVST 236 Query: 241 LVKSF 245 LV S+ Sbjct: 237 LVASY 241 >gi|114562370|ref|YP_749883.1| flagellar biosynthesis protein FliP [Shewanella frigidimarina NCIMB 400] gi|114333663|gb|ABI71045.1| flagellar biosynthetic protein FliP [Shewanella frigidimarina NCIMB 400] Length = 253 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 87/241 (36%), Positives = 142/241 (58%), Gaps = 6/241 (2%) Query: 7 FALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPR 64 +++P + L + A + + V + + T +S P ++IM+T F R Sbjct: 15 LVALILSPTALAQDGVLPALTVTTAADGTTEYSVTMQILLLMTAMSFIPAMVIMLTSFTR 74 Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124 I+V SILR +G+ P N V+I ++LFMTF++M+P D+ ++P +N +T T A Sbjct: 75 IIVVLSILRQALGLQQTPSNQVLIGISLFMTFFIMAPVFDKIYAEAVEPYINETMTLTQA 134 Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184 EP FM + R DL F++++ DI + ++IP+F+ SEL+ + Sbjct: 135 YDVGKEPIKTFMLSQVRTTDLQTFIEISGYK----DIQSPEQAPMSVVIPAFITSELKTA 190 Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 F+IGF++ +PFL++D++VA+I+MAMGMMML P +SLPFK++ FVL+DGW L++ L S Sbjct: 191 FQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWGLVMGTLANS 250 Query: 245 F 245 F Sbjct: 251 F 251 >gi|114764047|ref|ZP_01443286.1| flagellar biosynthetic protein FliP [Pelagibaca bermudensis HTCC2601] gi|114543405|gb|EAU46420.1| flagellar biosynthetic protein FliP [Roseovarius sp. HTCC2601] Length = 241 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 103/245 (42%), Positives = 155/245 (63%), Gaps = 5/245 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 M R AL L+ L A ++ +++ S++ ++ + T+LS+AP + IMVT Sbjct: 1 MWRAALSALILI--ALSTAATAQELRLDLGGGGSLTATSLQLIALITLLSLAPGIAIMVT 58 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 CFP + V +ILR +G+ PPN++I+SLALF+T++VM PT + + G++PL++ +I+ Sbjct: 59 CFPFLVTVLAILRQAVGLQQSPPNMLIVSLALFLTYFVMEPTFTAAWQDGLRPLIDEEIS 118 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 ++R PF FM T D + F MA + T +LIPSFM+SE Sbjct: 119 VEEGVERTLVPFRGFMAGRT---DANTFSSMADLRPDASGETLRPEAPLSLLIPSFMLSE 175 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 + R+F++GFLI LPFLIID++VA I+M+MGMMM+PP +SLPFK+ FFV+ DGWSLL Sbjct: 176 IARAFQVGFLIFLPFLIIDLVVAAILMSMGMMMVPPAIVSLPFKLAFFVIADGWSLLAGA 235 Query: 241 LVKSF 245 LV+S+ Sbjct: 236 LVRSY 240 >gi|116514991|ref|YP_802620.1| flagellar biosynthesis protein FliP [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256845|gb|ABJ90527.1| type III protein export, membrane component [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 244 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 98/217 (45%), Positives = 154/217 (70%), Gaps = 4/217 (1%) Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88 IP + ++ + V++ I TI+S P ++M+TCF R IIV S+LRT +G+ PPN ++I Sbjct: 30 IPDEFNLLNFSVKSSAILTIISFLPACILMMTCFTRIIIVLSLLRTALGVPYSPPNQILI 89 Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148 L+LF+TF++MSPTL++ + PL ++I A++++ +P +FM TR+ D+S+F Sbjct: 90 GLSLFLTFFIMSPTLNKIYNTALIPLYKHEINTEVALKKIIKPIHIFMLKQTRKSDISVF 149 Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208 +A S K D+I + IL+PSF+ISEL+ +F+IGF ++LPFLIID+++A+I+M+ Sbjct: 150 WKLAKISFPM----KKDNIPFYILLPSFIISELKTAFQIGFTVLLPFLIIDLVIASILMS 205 Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +G+MM+ P++ISLP K+I FVL DGW LLV +L KSF Sbjct: 206 LGIMMISPSTISLPLKLILFVLSDGWKLLVVSLAKSF 242 >gi|309388834|gb|ADO76714.1| flagellar biosynthetic protein FliP [Halanaerobium praevalens DSM 2228] Length = 254 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 93/251 (37%), Positives = 151/251 (60%), Gaps = 10/251 (3%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTW------IVRTFGIFTILSIAPI 54 ++ F LF +T + + ++ + + + ++ + T+LS+AP Sbjct: 7 LVFLVFLILFSLTITVSAQDFQIPNISLEIGNGTANNQGDDLVLSLQILLLLTVLSLAPA 66 Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114 ++I+ T F R IIVFSIL+ + + ++PPN V+I +A+F+T ++M+P + +QP Sbjct: 67 IIILFTSFTRIIIVFSILKRALALNNMPPNQVLIGIAIFLTIFIMAPVWQGVNQDALQPY 126 Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174 + I+ A + P FM N E+ L+LF ++A D + ILIP Sbjct: 127 LAQDISLEQAYENTITPVREFMFNQVDERSLALFTNIAEIERPE----SRDDLPTYILIP 182 Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234 +F+I+E++ +F+IGFLI +PFL+IDMIVA+I+M+MGMMMLPP ISLPFK++ FVL DGW Sbjct: 183 AFLINEIKIAFQIGFLIYIPFLMIDMIVASILMSMGMMMLPPVIISLPFKILLFVLADGW 242 Query: 235 SLLVENLVKSF 245 +L+ +LVK+F Sbjct: 243 HILIGSLVKTF 253 >gi|148261126|ref|YP_001235253.1| flagellar biosynthesis protein FliP [Acidiphilium cryptum JF-5] gi|326404527|ref|YP_004284609.1| flagellar biosynthetic protein FliP [Acidiphilium multivorum AIU301] gi|146402807|gb|ABQ31334.1| flagellar biosynthetic protein FliP [Acidiphilium cryptum JF-5] gi|325051389|dbj|BAJ81727.1| flagellar biosynthetic protein FliP [Acidiphilium multivorum AIU301] Length = 253 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 89/215 (41%), Positives = 143/215 (66%), Gaps = 4/215 (1%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 + +++ + ++S+AP LL+M+T F R +IV S+LRT +G + PPN V+I L Sbjct: 38 GGAPETAKLIQLIALIGVISLAPSLLVMLTAFTRIVIVLSLLRTALGTQTTPPNSVLIGL 97 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 ALF+T++VM+P +S G+ P+ + ++ A PF F+ +N R D+ +F+ Sbjct: 98 ALFLTYFVMAPVFSQSWHTGLLPMTQGDVGTLEGLKLAAAPFHTFLADNARPADVRVFLS 157 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 +AH + +R LIP F++ ELRR FE+GF+I LPF++ID+++++I+M++G Sbjct: 158 LAHIKPP----ANMQDVPWRALIPGFVVGELRRGFEMGFMIFLPFMVIDIVISSILMSLG 213 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMMLPPT++SLPFK+IFFVL+DGW L+ +LV+SF Sbjct: 214 MMMLPPTAVSLPFKIIFFVLVDGWQLVCGSLVRSF 248 >gi|325474550|gb|EGC77736.1| flagellar biosynthetic protein fliP [Treponema denticola F0402] Length = 259 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 79/217 (36%), Positives = 122/217 (56%), Gaps = 2/217 (0%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P+ + V+ T++SIAP LL+++T F R IV ++ + + VPP V+ Sbjct: 45 PSTNKDVAFSVQLLIFITLISIAPSLLLLMTSFLRLSIVLDFVKRALSLQQVPPTQVLNG 104 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 +A F+T ++M PT + +P+ QI A + +P FM ++ + Sbjct: 105 IAFFLTLFIMWPTFTQIYNNAYKPMSEGQIGIEEAYREAEKPMRYFMYKQMQKNPAHIRT 164 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 MA S D + ILI +F++ EL +F+IG + LPF+IIDMIVA+I+M+M Sbjct: 165 FMAMSKLPKPDTLA--DVPTHILIAAFILHELTIAFQIGIFLYLPFIIIDMIVASILMSM 222 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 GM+MLPP IS+PFK+I FV++DGW LL L +SF+ Sbjct: 223 GMIMLPPVQISMPFKLILFVMVDGWGLLFGKLFESFL 259 >gi|83594162|ref|YP_427914.1| flagellar biosynthesis protein FliP [Rhodospirillum rubrum ATCC 11170] gi|83577076|gb|ABC23627.1| Flagellar transport protein FliP [Rhodospirillum rubrum ATCC 11170] Length = 264 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 106/227 (46%), Positives = 154/227 (67%), Gaps = 5/227 (2%) Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 A + +V S + I++ G+ T+LS+AP LLIMVT F R ++V SILR + Sbjct: 40 AMAQSVNVDLGTGGGSTTARIIQLVGLLTVLSVAPGLLIMVTSFTRIVVVLSILRQALAT 99 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 S PPN+V++SLALFMTF++M+PT ++ + G+ PL+ QI+E A R PF FM Sbjct: 100 QSTPPNMVMVSLALFMTFFIMAPTFQQAWDQGLSPLIQEQISEEEAFTRTVAPFRTFMLA 159 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 + R+KDL LFM + + + LIP+FMISELRR+FEIGFLI LPF++I Sbjct: 160 HVRDKDLELFMSF-----NKETAAQPSDVSTQALIPAFMISELRRAFEIGFLIFLPFVVI 214 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 DM++A+++M+MGMMMLPP +++PFK+IFFVL+DGW L++ +L+ S+ Sbjct: 215 DMVIASVLMSMGMMMLPPMMLAMPFKLIFFVLVDGWYLVIGSLLSSY 261 >gi|260429128|ref|ZP_05783105.1| flagellar biosynthetic protein FliP [Citreicella sp. SE45] gi|260419751|gb|EEX13004.1| flagellar biosynthetic protein FliP [Citreicella sp. SE45] Length = 242 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 100/245 (40%), Positives = 149/245 (60%), Gaps = 7/245 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 +I FAL + + +L N+ S++ ++ + T+LS+AP + IMVT Sbjct: 4 LIALTGFALLMQAGPAAAQEITL----NLGEGGSVTAASLQLIALITLLSLAPGIAIMVT 59 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 CFP + V SILR +G+ PPN++I+SLALF+T++VM P + G+ PL++ QI Sbjct: 60 CFPFLVTVLSILRQAIGLQQSPPNMLIVSLALFLTYFVMEPVFTEAWTNGVAPLLDEQIE 119 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A +R EPF FM D F ++A + +L+PSFM+SE Sbjct: 120 AREAFERTLEPFRGFMATRI---DPDTFANIADLRPDARGTELDPGAPLSLLVPSFMLSE 176 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 + R+F++GFLI LPFLIID++VA ++M+MGMMM+PP +SLPFK+ FFV+ DGWSLL + Sbjct: 177 IARAFQVGFLIFLPFLIIDLVVAAVLMSMGMMMVPPAIVSLPFKLAFFVIADGWSLLAGS 236 Query: 241 LVKSF 245 LV+S+ Sbjct: 237 LVRSY 241 >gi|313905144|ref|ZP_07838513.1| flagellar biosynthetic protein FliP [Eubacterium cellulosolvens 6] gi|313470047|gb|EFR65380.1| flagellar biosynthetic protein FliP [Eubacterium cellulosolvens 6] Length = 224 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 82/212 (38%), Positives = 131/212 (61%), Gaps = 4/212 (1%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 +T + T++++ P ++IM+T F R II+ S R +G+ PPN+V++ ++LF Sbjct: 16 GGNTPTLSMIYTLTLVALLPSIVIMMTSFVRTIIILSFTRNALGVQQSPPNMVLVGISLF 75 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 +T ++M+PT+ + E QP +IT+ AI+R+ P FM NT K L+ F+ MA Sbjct: 76 LTLFIMTPTITQINEEAYQPYQRGEITQEQAIERMQVPMKEFMLKNTETKTLNKFVKMAK 135 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 + + I+ P+FM SEL+R F GFLI LPFL++D++VAT +M+MGM M Sbjct: 136 TKK----LKNPKDYPLTIVTPAFMTSELKRGFMAGFLIYLPFLLLDVVVATTLMSMGMAM 191 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PPT +S+PFK++ FV ++GW LL ++ SF Sbjct: 192 MPPTMVSMPFKLLLFVSVNGWELLFSTIISSF 223 >gi|255322335|ref|ZP_05363481.1| flagellar biosynthetic protein FliP [Campylobacter showae RM3277] gi|255300708|gb|EET79979.1| flagellar biosynthetic protein FliP [Campylobacter showae RM3277] Length = 246 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 106/249 (42%), Positives = 161/249 (64%), Gaps = 9/249 (3%) Query: 2 IRYCFFALFLVTPELVFAKS-----SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILL 56 ++ F LF + + + +++ ++ P + + + T+L++AP L+ Sbjct: 1 MKKLTFLLFFIFAAVAIGEDNVTIPTVNLSLSAPTTPTQLVSSLNVLLVLTVLTLAPSLV 60 Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116 M+T F R IIVFS LR MG +PP+ V+ISLA+ +TF++M P ++ E G+QP ++ Sbjct: 61 FMMTSFLRLIIVFSFLRQAMGTQQMPPSTVLISLAMVLTFFIMEPVGKQAYEAGVQPYLS 120 Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176 QI A +R +PF FM NTREKDL+LF+ + + + D I +++ +F Sbjct: 121 EQIGYQEAFERGVKPFREFMIKNTREKDLALFLRIRNMPNP----QSFDDIPLTVVMSAF 176 Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236 MISE++ +FEI FL+ LPFL+IDM+V++++MAMGMMMLPPT ISLPFK++ FVL+DGW+L Sbjct: 177 MISEMKTAFEIAFLLYLPFLVIDMVVSSVLMAMGMMMLPPTMISLPFKLLIFVLVDGWNL 236 Query: 237 LVENLVKSF 245 LV NLVKSF Sbjct: 237 LVMNLVKSF 245 >gi|304392500|ref|ZP_07374440.1| flagellar biosynthetic protein FliP [Ahrensia sp. R2A130] gi|303295130|gb|EFL89490.1| flagellar biosynthetic protein FliP [Ahrensia sp. R2A130] Length = 259 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 124/258 (48%), Positives = 168/258 (65%), Gaps = 13/258 (5%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMN--------IPADLSISTWIVRTFGIFTILSIA 52 MI AL L P + ++ S+S I++ FG+ T+LS+A Sbjct: 1 MIAGLLLALVLTGPAYAQTSPDVLGDLSRLLGSGTEATGSPSVSGQIIQLFGLVTVLSLA 60 Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +LI+VT F RFII FSILR G+G+ S P NL++ISL+LFMTF+VMS T + + G Sbjct: 61 PGILIVVTSFTRFIIAFSILRMGLGLQSTPANLILISLSLFMTFHVMSATFQTAWDKGAG 120 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT-----DITKNDHI 167 PL +ITE A+ ++ EPF FM N R +D++LF D+ + + D + Sbjct: 121 PLSRGEITEAQAVTQIIEPFRTFMLANVRGEDIALFTDLQNERAVADGVAVPETAAADEV 180 Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227 L+P+FMISE+RR FEIGFLI+LPFL+ID+IVATIVMAMGMMMLPPT ++LPFK++F Sbjct: 181 AITALVPAFMISEIRRGFEIGFLILLPFLVIDLIVATIVMAMGMMMLPPTVVALPFKILF 240 Query: 228 FVLIDGWSLLVENLVKSF 245 FVLIDGW+LLV +L++SF Sbjct: 241 FVLIDGWNLLVGSLLRSF 258 >gi|312884811|ref|ZP_07744503.1| flagellar biosynthesis protein FliP [Vibrio caribbenthicus ATCC BAA-2122] gi|309367463|gb|EFP95023.1| flagellar biosynthesis protein FliP [Vibrio caribbenthicus ATCC BAA-2122] Length = 251 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 86/243 (35%), Positives = 135/243 (55%), Gaps = 6/243 (2%) Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCF 62 + L+ P L A S + ++ + + V + + T LS P ++M T F Sbjct: 12 IIGGIVLLCPFLAIASDSGLTLFSVTDGETQQEYSVKLQILLLMTALSFLPAFILMATSF 71 Query: 63 PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122 R I+V +ILR +G+ PPN V++ +AL +T +M P + P IT + Sbjct: 72 TRIIVVLAILRQALGLQQSPPNRVLVGIALALTLLIMRPVWSDIHQNAFLPYEAGTITLS 131 Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182 A +P FM T++ L M +A+ T D I + +++P+F+ISEL+ Sbjct: 132 QAFSIAEKPVRQFMLRQTQQNSLEQMMRIANEPMD----TSLDDISFAVILPAFVISELK 187 Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242 +F+IGF++ +PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW++ V L Sbjct: 188 TAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKLVVFVLVDGWAMTVGTLS 247 Query: 243 KSF 245 SF Sbjct: 248 ASF 250 >gi|115377840|ref|ZP_01465028.1| type III secretion apparatus protein, YscR/HrcR family [Stigmatella aurantiaca DW4/3-1] gi|310820307|ref|YP_003952665.1| type III secretion system inner membrane p family protein [Stigmatella aurantiaca DW4/3-1] gi|115365172|gb|EAU64219.1| type III secretion apparatus protein, YscR/HrcR family [Stigmatella aurantiaca DW4/3-1] gi|309393379|gb|ADO70838.1| Type III secretion system inner membrane P family protein [Stigmatella aurantiaca DW4/3-1] Length = 277 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 82/264 (31%), Positives = 138/264 (52%), Gaps = 18/264 (6%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHD---------VMNIPADLSISTWIVRTFGIFTILSI 51 +I + F + P + A+ V ++ S ++ + LS+ Sbjct: 14 IIPWLFATTVALQPAVALAQRRRGGGDDPIPDSVVQAATSNESFASRPLILILALAALSL 73 Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 P +L+MVT F + +V SI+R+ +G +PP VI LA+ +T Y+M+P + Sbjct: 74 VPFMLMMVTSFVKISVVLSIVRSALGTQQIPPTQVITGLAVILTVYIMAPVGQEMYKAAK 133 Query: 112 QPL---------MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT 162 + T A R EP F+ + KD +LF +A + D Sbjct: 134 VDIWAKGPSLLSSETVGTLLEAADRSKEPLRDFLVKKVKNKDRALFFHLAKKMRKAEDRK 193 Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222 ++ I+IP+F++SEL+ +F+IGFL+ +PF++IDM+VA I++A+GM ML PT+IS+P Sbjct: 194 DIGDRDFMIIIPAFVVSELKEAFQIGFLLFVPFIVIDMVVANILLALGMHMLSPTTISMP 253 Query: 223 FKVIFFVLIDGWSLLVENLVKSFI 246 FK++ FVL+DGW L+ + LV ++ Sbjct: 254 FKLLLFVLVDGWYLIAKGLVVGYL 277 >gi|310659027|ref|YP_003936748.1| flagellar export machinery protein [Clostridium sticklandii DSM 519] gi|308825805|emb|CBH21843.1| component of the flagellar export machinery [Clostridium sticklandii] Length = 262 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 85/220 (38%), Positives = 145/220 (65%), Gaps = 1/220 (0%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 +N + + + +FT+L++ P +LIM+T F R I++ S L+ MG+ P+ V Sbjct: 42 INGSENPRDLSNSIEMLMLFTVLTLLPSILIMMTSFTRVIVILSFLKNAMGVQQAIPSQV 101 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 I+ L+LF+TF++M+P ++P +N+IT+ A + P FM TREKD+ Sbjct: 102 IVGLSLFLTFFIMAPVGSEVYSEALRPYFDNEITQEEAFETAMVPVREFMMKQTREKDIK 161 Query: 147 LFMDMAHSSH-RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205 LFMD++ + N++ ++I ++IP+F+ISEL+ F++GFL+ +PF++IDM+VA+ Sbjct: 162 LFMDLSKNEELANSEDLVLENIPNTVIIPAFIISELKTGFQVGFLLFIPFIVIDMVVAST 221 Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +M+MGMMMLPP ISLPFK++ FVL+DGW +++++++ F Sbjct: 222 LMSMGMMMLPPMMISLPFKILLFVLVDGWDMVIKSIIVGF 261 >gi|296282256|ref|ZP_06860254.1| flagellar biosynthesis protein FliP [Citromicrobium bathyomarinum JL354] Length = 258 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 89/237 (37%), Positives = 144/237 (60%), Gaps = 6/237 (2%) Query: 12 VTPELVFAKSSLHDVMN--IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVF 69 P A +L A + ++ + +L+ P +L+M+T F R I+V Sbjct: 26 AVPTDSAAAGALDRAFGELGGAGGEPLSLSLQLLLVMGLLTFLPAILLMMTSFTRIIVVL 85 Query: 70 SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129 +ILR +G+ PPN V+I ++LF++ ++M+PTLDR I+P QI AI+R Sbjct: 86 AILRQALGLQQSPPNQVLIGISLFLSLFIMAPTLDRVNTAAIEPYSAGQINAEVAIERAG 145 Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189 F FM TRE DL +F D+A++ + + IL+P+F+ SEL+ +F+IGF Sbjct: 146 GEFHKFMIRQTRENDLQMFADIANAPK----FASPQDVPFSILLPAFVTSELKTAFQIGF 201 Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 ++ LPFL+ID++V++++M++GMMM+ P +SLPFK++ FVL+DGWSLL+ +L SF+ Sbjct: 202 MLFLPFLVIDLVVSSVLMSLGMMMMSPMLVSLPFKLLLFVLVDGWSLLMGSLASSFV 258 >gi|195953030|ref|YP_002121320.1| flagellar biosynthesis protein FliP [Hydrogenobaculum sp. Y04AAS1] gi|195932642|gb|ACG57342.1| flagellar biosynthetic protein FliP [Hydrogenobaculum sp. Y04AAS1] Length = 252 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 97/242 (40%), Positives = 153/242 (63%), Gaps = 5/242 (2%) Query: 8 ALFLVTPELVFAKSSLH----DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63 L L+ L A++ + + + T +R I T+LS+AP ++IM T F Sbjct: 11 LLLLIFIHLAMAQNENPINVIPGIQVKFNNGNFTEAIRLILILTVLSLAPSIIIMTTSFI 70 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 R + V S+LR +G+ +VPPN VI SLALF+TFYVM P +++ + +QP + ++IT+ Sbjct: 71 RIVTVLSVLRQAIGLPNVPPNQVITSLALFLTFYVMYPVINQINQNALQPYLQHKITDKQ 130 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 IQ EP FM NT+ F+ +A + +I + + ++IP+FM+SEL Sbjct: 131 FIQNTIEPIKDFMVRNTKVSTERTFL-LASNIPNKDNIKNINDLPLSVVIPAFMVSELSI 189 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 +F+I FL+ LPFLIIDM+V+ I++AMG++M+PPT ISLPFK++ FVL++GW L++ +LV+ Sbjct: 190 AFQIIFLLYLPFLIIDMVVSAILLAMGIIMIPPTVISLPFKIMLFVLVNGWELVILSLVR 249 Query: 244 SF 245 S+ Sbjct: 250 SY 251 >gi|237752332|ref|ZP_04582812.1| flagellar biosynthesis protein FliP [Helicobacter winghamensis ATCC BAA-430] gi|229375821|gb|EEO25912.1| flagellar biosynthesis protein FliP [Helicobacter winghamensis ATCC BAA-430] Length = 249 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 99/246 (40%), Positives = 147/246 (59%), Gaps = 6/246 (2%) Query: 2 IRYCFFALFLVTPELVFAKS--SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 I L P A + ++ + P + + I T+L +AP L++M Sbjct: 7 ILCIGVILLFGAPPEPQAPTIPTVDLTLRAPTEPGDLVTTLNIVVILTLLVLAPSLILMA 66 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R +IVFS LRT MG PP +++S AL +T ++M P E GI+P + +I Sbjct: 67 TSFARILIVFSFLRTAMGTQQSPPTQLLVSFALILTMFIMEPVAKEGYEKGIKPYIAKEI 126 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 A R ++PF FM NTR KDL+LF + + + T + I +P+F+IS Sbjct: 127 PYDEAFLRASQPFKDFMIRNTRPKDLALFYRIRNLENPQT----AQDVPLSIALPAFIIS 182 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 E++ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPPT ISLPFK++ F+L+DG++LL Sbjct: 183 EMKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPTMISLPFKILIFILVDGFNLLTM 242 Query: 240 NLVKSF 245 NLV+SF Sbjct: 243 NLVQSF 248 >gi|237653572|ref|YP_002889886.1| flagellar biosynthesis protein FliP [Thauera sp. MZ1T] gi|237624819|gb|ACR01509.1| flagellar biosynthetic protein FliP [Thauera sp. MZ1T] Length = 257 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 95/227 (41%), Positives = 149/227 (65%), Gaps = 6/227 (2%) Query: 21 SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 +L + PA +T+ ++T + T+LS P L++M TCF R +IVFS+LR MG Sbjct: 33 QALPALTTSPAAGGGTTYSLTIQTLMLMTLLSFIPALVLMTTCFTRIVIVFSLLRQAMGT 92 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 + PPN V++ LALF+TF+VM+P +R P+ +I A++R + P FM Sbjct: 93 QTAPPNQVLLGLALFLTFFVMAPVGERVYTEAYLPMSEGRIQFDEALERASVPVKGFMLK 152 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 RE DL+LF +A + K + + R++IP+F+ SEL+ +F+IGF++ +PF+II Sbjct: 153 QVREPDLALFAGLAKLP----PVDKAEDLPMRVVIPAFVTSELKTAFQIGFIVFIPFIII 208 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 DM+VA+++M+MGMMM+ P +SLPFK++ FVL+DGW+LL+ +LV+SF Sbjct: 209 DMVVASVLMSMGMMMMSPVIVSLPFKIMLFVLVDGWTLLIGSLVQSF 255 >gi|88800467|ref|ZP_01116031.1| flagellar biosynthetic protein FliP [Reinekea sp. MED297] gi|88776797|gb|EAR08008.1| flagellar biosynthetic protein FliP [Reinekea sp. MED297] Length = 221 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 88/218 (40%), Positives = 134/218 (61%), Gaps = 3/218 (1%) Query: 28 NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87 + + ++ I T L+ P L+M+T F R I+VF+ILR +G+ P N ++ Sbjct: 5 TTEDGGTRYSVTIQILAIMTALTFIPAALMMMTSFTRIIVVFAILRQAIGLQQTPSNQML 64 Query: 88 ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147 I LALF+TF++M+P + IQP + I A+ R EP FM TRE DL L Sbjct: 65 IGLALFLTFFIMAPVFNEVNANAIQPYIAEDILPLEAVDRAVEPMKRFMLAQTRESDLGL 124 Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 F+ +A + + IL+P+F+ SEL+ +F+IGFL+ +PFLIID+++A+I+M Sbjct: 125 FIRLADEEG---NFDDPQQVPLNILMPAFVTSELKTAFQIGFLLFIPFLIIDLVIASILM 181 Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 AMGMMML P ISLPFK++ FVL+DGW++++ ++ SF Sbjct: 182 AMGMMMLSPIIISLPFKIMLFVLVDGWAMVMGSVAASF 219 >gi|94495439|ref|ZP_01302019.1| flagellar transport protein [Sphingomonas sp. SKA58] gi|94424827|gb|EAT09848.1| flagellar transport protein [Sphingomonas sp. SKA58] Length = 255 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 90/221 (40%), Positives = 138/221 (62%), Gaps = 4/221 (1%) Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84 + + D + ++ + ++L++ P L++M+T F R IIV S+LR +G+ PPN Sbjct: 37 ALGQVSGDGRSLSLSLQILILMSLLTVLPSLVLMMTSFTRIIIVLSLLRQALGLQQTPPN 96 Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144 V++ LALF++ +VM P +D P QI+ A+ R A+ FM TRE D Sbjct: 97 QVLVGLALFLSLFVMRPAIDTINAQAFDPYGKGQISIEEAVGRSAKVLHGFMSKQTRESD 156 Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204 L LF ++A + T I + IL+P+F+ SEL+ +F+IGF+I LPFLIID++VA+ Sbjct: 157 LKLFANLAQAPAFRTPA----DIPFSILLPAFVTSELKTAFQIGFMIFLPFLIIDLVVAS 212 Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MA+GMMML PT IS+PFK++ FVL+DGW+L + +L SF Sbjct: 213 TLMALGMMMLSPTIISMPFKLLLFVLVDGWALTMGSLAGSF 253 >gi|254973925|ref|ZP_05270397.1| flagellar biosynthesis protein FliP [Clostridium difficile QCD-66c26] gi|255091312|ref|ZP_05320790.1| flagellar biosynthesis protein FliP [Clostridium difficile CIP 107932] gi|255305286|ref|ZP_05349458.1| flagellar biosynthesis protein FliP [Clostridium difficile ATCC 43255] gi|255312969|ref|ZP_05354552.1| flagellar biosynthesis protein FliP [Clostridium difficile QCD-76w55] gi|255515728|ref|ZP_05383404.1| flagellar biosynthesis protein FliP [Clostridium difficile QCD-97b34] gi|255648822|ref|ZP_05395724.1| flagellar biosynthesis protein FliP [Clostridium difficile QCD-37x79] gi|260682041|ref|YP_003213326.1| flagellar biosynthesis protein FliP [Clostridium difficile CD196] gi|260685639|ref|YP_003216772.1| flagellar biosynthesis protein FliP [Clostridium difficile R20291] gi|306518937|ref|ZP_07405284.1| flagellar biosynthesis protein FliP [Clostridium difficile QCD-32g58] gi|260208204|emb|CBA60554.1| flagellar biosynthetic protein [Clostridium difficile CD196] gi|260211655|emb|CBE01917.1| flagellar biosynthetic protein [Clostridium difficile R20291] Length = 221 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 80/220 (36%), Positives = 134/220 (60%), Gaps = 3/220 (1%) Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85 + +P T ++ F T L P ++ M+T F R +I S L++ +G P+ Sbjct: 4 LSKLPLADVPYTSSMQLFLFLTALMFLPFVMFMMTSFVRIVISLSFLKSALGAQQAIPSQ 63 Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145 +++ LA+ +T ++M P L+ E +QP M ++T A++ P F+ TR+ DL Sbjct: 64 ILVGLAIVLTIFIMRPVLNEINEKALQPYMKEEVTMEEAMKEAEGPIKEFLLKQTRQTDL 123 Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205 LF++ A + ++I +++P+F ISEL+ +F+IGFLI +PFLIID++VA++ Sbjct: 124 DLFVEQAGLKEKK---LTRENIPLSVVVPAFAISELKTAFQIGFLIYIPFLIIDLVVASV 180 Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +M+MGM MLPP ISLPFK++ FV++DGW+L+V+ L+ F Sbjct: 181 LMSMGMFMLPPVMISLPFKLLLFVMVDGWNLIVKTLILGF 220 >gi|288942627|ref|YP_003444867.1| flagellar biosynthetic protein FliP [Allochromatium vinosum DSM 180] gi|288897999|gb|ADC63835.1| flagellar biosynthetic protein FliP [Allochromatium vinosum DSM 180] Length = 249 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 103/248 (41%), Positives = 148/248 (59%), Gaps = 7/248 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHD---VMNIPADLSISTWIVRTFGIFTILSIAPILLI 57 + R+ L+ P LV A+ + V P + + ++ I T++++ P LI Sbjct: 4 LARWGLVLAGLLAPGLVLAQIGGLNAVTVTTAPDGGQVYSVTLQILIIMTLMTLLPSALI 63 Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 M+T F R IIV ILR G+G P N +++ LALF+T +VMSP + IQP M Sbjct: 64 MMTSFTRIIIVLGILRQGLGTTQTPSNQILLGLALFLTLFVMSPIFQEIYDTAIQPYMEE 123 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177 Q+ A+ + +P FM TRE DL+LF + D I +LIPSF+ Sbjct: 124 QLGTEEALAKAVKPLRTFMLAQTRESDLALFAGIRGIDG----FESPDDIPLTLLIPSFV 179 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 ISEL+ +F+IGFLI++PFLIID++VA+++M+MGMMML P ISLPFK++ FVL+DGWSLL Sbjct: 180 ISELKTAFQIGFLILIPFLIIDLVVASVLMSMGMMMLSPLIISLPFKLMLFVLVDGWSLL 239 Query: 238 VENLVKSF 245 + L +SF Sbjct: 240 LGTLARSF 247 >gi|117928065|ref|YP_872616.1| flagellar biosynthesis protein FliP [Acidothermus cellulolyticus 11B] gi|117648528|gb|ABK52630.1| flagellar biosynthetic protein FliP [Acidothermus cellulolyticus 11B] Length = 318 Score = 192 bits (487), Expect = 4e-47, Method: Composition-based stats. Identities = 87/234 (37%), Positives = 142/234 (60%), Gaps = 6/234 (2%) Query: 14 PELVFAKSSLHDVMNIPADL--SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71 P A + + + + + + + T+L++AP LI+ T F + I+V S+ Sbjct: 88 PTGPAAPNGPGSTVTVSINGVNGKPSQSIVIILLMTVLAVAPAALILTTSFTKVIVVLSL 147 Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131 R +G+ ++PPN V++ LALF++ +VMSPTL + +QP + IT + A +P Sbjct: 148 TRNALGLQTIPPNQVLVGLALFLSLFVMSPTLSAMNKDAVQPYLKGHITASQAYDAGVQP 207 Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191 FM N TR+ DL+L +D +H S + L+P+F++SELR +F IGF+I Sbjct: 208 LKTFMLNQTRKDDLALMIDASHQSRP----ASPKDVSMTTLVPAFVLSELRAAFIIGFVI 263 Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PFLIID++V++ +M+MGMMMLPP+ ISLPFK++ F+++DGW L+ L+ S+ Sbjct: 264 FVPFLIIDLVVSSSLMSMGMMMLPPSIISLPFKLLLFIMVDGWGLIARTLLSSY 317 >gi|168334561|ref|ZP_02692717.1| flagellar biosynthetic protein FliP [Epulopiscium sp. 'N.t. morphotype B'] Length = 243 Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 99/245 (40%), Positives = 149/245 (60%), Gaps = 4/245 (1%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 M + F FL+ P VF+ +L+ + P + ++ T L + P LL++ T Sbjct: 1 MGKLVLFLCFLLVPTRVFSLDALNSITQSPEFGT----SLQLVFFITFLGLIPTLLLVST 56 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R II L+T MG +PPN V+I LALF+TF+VMSP + I P QI+ Sbjct: 57 SFTRIIITLYFLKTAMGTQQMPPNQVVIGLALFLTFFVMSPVVSTINTEAIVPYSEGQIS 116 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 + +++ A P FM TR +D+ LFMD+++ + + Y I++P+F+ISE Sbjct: 117 QMEFLEQAAAPIKEFMVMQTRXEDIKLFMDLSNQPAIVDETNILAQLPYHIVVPAFIISE 176 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 +R F IGFL+ LPF+IIDM+VA+++MAMGMMMLPP ISLPFK++ F+++DGW L++ Sbjct: 177 IRAGFVIGFLMYLPFIIIDMVVASVLMAMGMMMLPPAMISLPFKILIFIIVDGWHLIIGE 236 Query: 241 LVKSF 245 LV++F Sbjct: 237 LVETF 241 >gi|149189860|ref|ZP_01868140.1| flagellar biosynthesis protein P [Vibrio shilonii AK1] gi|148836346|gb|EDL53303.1| flagellar biosynthesis protein P [Vibrio shilonii AK1] Length = 261 Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 83/245 (33%), Positives = 131/245 (53%), Gaps = 4/245 (1%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 +I L L + +N + ++ + T LS P ++M T Sbjct: 18 LIGLVIVMLGLFAHPALADNGLTFLTVNDGQSEQEYSVKLQILLLMTALSFLPAFILMAT 77 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R I+V +ILR +G+ PPN V+I +AL ++ +M P E P +IT Sbjct: 78 SFTRIIVVLAILRQALGLQQSPPNRVLIGIALSLSILIMRPVWSDVYEHAFVPYDQGEIT 137 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A +P FM T+ L + +A+ +K + I + I++P+F+ISE Sbjct: 138 LMQAFATAEKPVRNFMLAQTQRNSLEQMLRIANEPVD----SKVEDISFAIVLPAFVISE 193 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +F+IGF++ +PFLIID++VA+++MAMGMMML P +SLPFK++ FVL+DGW++ V Sbjct: 194 LKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIVSLPFKLVVFVLVDGWAMTVGT 253 Query: 241 LVKSF 245 L SF Sbjct: 254 LSASF 258 >gi|163794138|ref|ZP_02188111.1| Flagellar biosynthesis pathway [alpha proteobacterium BAL199] gi|159180752|gb|EDP65271.1| Flagellar biosynthesis pathway [alpha proteobacterium BAL199] Length = 253 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 112/235 (47%), Positives = 157/235 (66%), Gaps = 6/235 (2%) Query: 11 LVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70 + V A+S D+ S + +++ T+LS+AP +L+MVT F R +IV Sbjct: 20 FLWGSPVLAQSLTLDLGE--PGGSTTARLIQLVLTVTLLSLAPGILVMVTSFTRIVIVLG 77 Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130 +LRT +G PPNLV+ISLALF+T ++M+PTL + G+QPL+ +I E A V + Sbjct: 78 LLRTALGTQQSPPNLVMISLALFLTGFIMTPTLKEAWTNGVQPLIEERIDEIEAFDAVVQ 137 Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190 PF FM REKDL LF DMA T + + ++LIP+FMISELRR+FEIGFL Sbjct: 138 PFRGFMLRTVREKDLRLFEDMAQVGPAETGL----NAPLQVLIPAFMISELRRAFEIGFL 193 Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 + LPF+IIDM++A+++M+MGMMM+PP ISLPFK+IFFVL+DGW ++ +LV+SF Sbjct: 194 LYLPFVIIDMVIASVLMSMGMMMVPPVMISLPFKLIFFVLVDGWYMIAGSLVRSF 248 >gi|42528260|ref|NP_973358.1| flagellar biosynthesis protein FliP [Treponema denticola ATCC 35405] gi|7387675|sp|Q9X5A6|FLIP_TREDE RecName: Full=Flagellar biosynthetic protein fliP gi|4426951|gb|AAD20625.1| flagellar export protein FliP [Treponema denticola] gi|41819530|gb|AAS13277.1| flagellar biosynthesis protein FliP [Treponema denticola ATCC 35405] Length = 271 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 79/217 (36%), Positives = 122/217 (56%), Gaps = 2/217 (0%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P+ + V+ T++SIAP LL+++T F R IV ++ + + VPP V+ Sbjct: 57 PSTNKDVAFSVQLLIFITLISIAPSLLLLMTSFLRLSIVLDFVKRALSLQQVPPTQVLNG 116 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 +A F+T ++M PT + +P+ QI A + +P FM ++ + Sbjct: 117 IAFFLTLFIMWPTFTQIYNNAYKPMSEGQIGIEEAYREAEKPMRYFMYKQMQKNPTHIRT 176 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 MA S D + ILI +F++ EL +F+IG + LPF+IIDMIVA+I+M+M Sbjct: 177 FMAMSKLPKPDTLA--DVPTHILIAAFILHELTIAFQIGIFLYLPFIIIDMIVASILMSM 234 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 GM+MLPP IS+PFK+I FV++DGW LL L +SF+ Sbjct: 235 GMIMLPPVQISMPFKLILFVMVDGWGLLFGKLFESFL 271 >gi|148976243|ref|ZP_01812967.1| putative flagellar assembly protein [Vibrionales bacterium SWAT-3] gi|145964337|gb|EDK29592.1| putative flagellar assembly protein [Vibrionales bacterium SWAT-3] Length = 246 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 83/246 (33%), Positives = 140/246 (56%), Gaps = 5/246 (2%) Query: 1 MIRYCFFALFL-VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 M + FF L L + A+ +D + + ++ + T+LS P +IM Sbjct: 1 MYKPIFFTLALALFAGASHAEGLTILSETTTSDGTEYSIKLQILILMTLLSFVPAFVIMC 60 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R +IV +ILR +G+ PPN V++ +AL T +M P + + P +++ Sbjct: 61 TSFTRIVIVLAILRQALGLQQTPPNQVLVGIALIFTLLIMRPVWTKIYDTAYIPYSKDEV 120 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 T A+ +P +M + T+ K L +A T I + I + +L+P++++S Sbjct: 121 TLMEALATAEKPLRRYMLDQTQRKALEQVSKIAG----ETAIESDQDIPFLVLLPAYLLS 176 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+ +F+IGF++ LPFL+ID++VA+++M+MGMMML P +SLPFK++ FV++DGW LL+ Sbjct: 177 ELKAAFQIGFMLFLPFLVIDLVVASVLMSMGMMMLSPLIVSLPFKLLVFVIVDGWGLLMG 236 Query: 240 NLVKSF 245 +L SF Sbjct: 237 SLANSF 242 >gi|85706151|ref|ZP_01037246.1| flagellar biosynthetic protein FliP [Roseovarius sp. 217] gi|85669315|gb|EAQ24181.1| flagellar biosynthetic protein FliP [Roseovarius sp. 217] Length = 245 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 98/230 (42%), Positives = 145/230 (63%), Gaps = 3/230 (1%) Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 A + ++I D S+S ++ + T+LS+AP + IMVTCFP + V SILR G+ Sbjct: 19 APAALAQEISLSIGDDASLSARTIQIIALITVLSLAPGIAIMVTCFPFIVTVLSILRQGI 78 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G+ PPN++I+SLALF+T++VM P + GI+PL+ +++ A + V PF FM Sbjct: 79 GLQQSPPNMLIVSLALFLTYFVMEPVFTEAWTNGIEPLLEERLSPERATEMVIAPFRQFM 138 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 D F MA + +LIPSFM+SE+ R+F+IGFL+ LPFL Sbjct: 139 LGRV---DPETFASMAALRPEASVTVAGSDAPLSVLIPSFMLSEIARAFQIGFLVFLPFL 195 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +ID++VA I+M+MGMMM+PP +SLPFK+ FFV+ DGW+L+ E+LVK ++ Sbjct: 196 VIDLVVAAILMSMGMMMVPPAIVSLPFKLAFFVIADGWTLIAESLVKGYM 245 >gi|242310594|ref|ZP_04809749.1| flagellar biosynthesis protein FliP [Helicobacter pullorum MIT 98-5489] gi|239522992|gb|EEQ62858.1| flagellar biosynthesis protein FliP [Helicobacter pullorum MIT 98-5489] Length = 251 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 97/247 (39%), Positives = 154/247 (62%), Gaps = 6/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKS--SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIM 58 ++ + +F PEL + + ++ + P + I+ + T+L +AP L++M Sbjct: 8 IVVFLPLVIFAAPPELPQSPTIPTIDLTLTAPNEPGDLVAILNIVIVLTLLVLAPSLVLM 67 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 T F R +IVFS LRT MG PP +++S AL +T ++M P + E G++P + + Sbjct: 68 ATSFARILIVFSFLRTAMGTQQSPPTQLLVSFALILTMFIMEPVVKEGYEKGVKPYVAKE 127 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ A R ++PF FM NTR KDL+LF + + + + I +P+F+I Sbjct: 128 ISYQEAFVRASQPFKDFMIRNTRPKDLALFYRIRGMENP----QNAQEVPFTIALPAFII 183 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SE++ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPPT ISLPFK++ F+L+DG++LL Sbjct: 184 SEMKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPTMISLPFKILIFILVDGFNLLT 243 Query: 239 ENLVKSF 245 NLV+SF Sbjct: 244 MNLVESF 250 >gi|110677670|ref|YP_680677.1| flagellar biosynthesis protein FliP [Roseobacter denitrificans OCh 114] gi|109453786|gb|ABG29991.1| flagellar biosynthetic protein FliP [Roseobacter denitrificans OCh 114] Length = 245 Score = 191 bits (486), Expect = 7e-47, Method: Composition-based stats. Identities = 103/245 (42%), Positives = 151/245 (61%), Gaps = 3/245 (1%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 M R A+ L+ + +++ D S+S ++ F + T+LS+AP L IM+T Sbjct: 3 MTRITLLAVVLIGLFTPSVSLAQDLSISLGDDGSLSARTIQLFILITVLSLAPGLAIMIT 62 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 CFP + V SILR +G+ PPN++I+SLALF+T+++M P + + GIQPL +N I Sbjct: 63 CFPFLVTVLSILRQAIGLQQSPPNMLIVSLALFLTYFIMEPVFQAAWQNGIQPLTDNAID 122 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 TA R EPF +FM D F MA D +L+PSF++SE Sbjct: 123 AETAFVRTLEPFRIFMAGRL---DPDTFFAMAELRSETIDAAPTAEAPLSVLVPSFLLSE 179 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 + R+F+IGFL+ LPFLIID++VA ++M+MGMMM+PP +SLPFK+ FFVL DGW+L+ + Sbjct: 180 ISRAFQIGFLVFLPFLIIDLVVAAVLMSMGMMMVPPVIVSLPFKLAFFVLADGWNLIAGS 239 Query: 241 LVKSF 245 LV+S+ Sbjct: 240 LVQSY 244 >gi|224418310|ref|ZP_03656316.1| flagellar biosynthesis protein FliP [Helicobacter canadensis MIT 98-5491] gi|253827632|ref|ZP_04870517.1| flagellar biosynthesis protein [Helicobacter canadensis MIT 98-5491] gi|313141841|ref|ZP_07804034.1| flagellar biosynthesis protein [Helicobacter canadensis MIT 98-5491] gi|253511038|gb|EES89697.1| flagellar biosynthesis protein [Helicobacter canadensis MIT 98-5491] gi|313130872|gb|EFR48489.1| flagellar biosynthesis protein [Helicobacter canadensis MIT 98-5491] Length = 250 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 96/248 (38%), Positives = 153/248 (61%), Gaps = 7/248 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLI 57 + CF + P + ++ + ++ P + + I+ + T+L +AP L++ Sbjct: 6 LWMACFIVVAFSAPPELPQSPTIPTIDLTLSGPNEPADLVAILNIVVVLTLLVLAPSLIL 65 Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 M T F R +IVFS LRT +G PP +++S AL +T ++M P E G++P + Sbjct: 66 MATSFARLLIVFSFLRTALGTQQSPPTQLLVSFALILTMFIMEPVFKEGYEQGVKPYVAK 125 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177 +I+ A R ++PF FM NTR KDL+LF + + T + + I +P+F+ Sbjct: 126 EISYQEAFVRASQPFKDFMIRNTRPKDLALFYRIRGMENPQT----AQDVPFTIALPAFI 181 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 ISE++ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPPT ISLPFK++ F+L+DG++LL Sbjct: 182 ISEMKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPTMISLPFKILIFILVDGFNLL 241 Query: 238 VENLVKSF 245 NLV+SF Sbjct: 242 TMNLVESF 249 >gi|322378387|ref|ZP_08052842.1| flagellar biosynthesis protein FliP [Helicobacter suis HS1] gi|322380261|ref|ZP_08054481.1| flagellar biosynthesis protein FliP [Helicobacter suis HS5] gi|321147298|gb|EFX41978.1| flagellar biosynthesis protein FliP [Helicobacter suis HS5] gi|321149200|gb|EFX43645.1| flagellar biosynthesis protein FliP [Helicobacter suis HS1] Length = 250 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 99/224 (44%), Positives = 149/224 (66%), Gaps = 4/224 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 +++ ++ P + + + T+L +AP L++++T F R I+VFS LRT +G Sbjct: 27 TINLSLSAPHTPTQLVTTLNVVLVLTLLVLAPSLVLVMTSFIRLIVVFSFLRTALGTQQT 86 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PP +++SLAL +TF++M P +S E I+P + +I+ T A ++ PF FM NTR Sbjct: 87 PPTQILVSLALILTFFIMEPAAKQSYESAIKPYLVEKISYTEAFEKGIVPFKEFMLKNTR 146 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 EKDL+LF + + + IL+P+FMISEL+ +F+IGFL+ LPFL+IDM+ Sbjct: 147 EKDLALFFRIRRLENPK----NASAVPLNILVPAFMISELKTAFQIGFLLYLPFLVIDMV 202 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 V++I+MAMGMMMLPP ISLPFK++ F+L+DG++LLVENLV SF Sbjct: 203 VSSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLVENLVASF 246 >gi|223040127|ref|ZP_03610407.1| flagellar biosynthetic protein FliP [Campylobacter rectus RM3267] gi|222878604|gb|EEF13705.1| flagellar biosynthetic protein FliP [Campylobacter rectus RM3267] Length = 246 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 104/249 (41%), Positives = 160/249 (64%), Gaps = 9/249 (3%) Query: 2 IRYCFFALFLVTPELVFAKS-----SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILL 56 ++ F LF + + + +++ ++ P + + + T+L++AP L+ Sbjct: 1 MKKLTFLLFFIFAAVAIGEDNVTIPTVNLSLSAPTTPTQLVSSLNVLLVLTVLTLAPSLV 60 Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116 M+T F R IIVFS LR MG +PP+ V+ISLA+ +TF++M P ++ E G++P + Sbjct: 61 FMMTSFLRLIIVFSFLRQAMGTQQMPPSTVLISLAMVLTFFIMEPVGKQAYEAGVRPYLG 120 Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176 QI A +R +PF FM NTREKDL+LF+ + + + D I +++ +F Sbjct: 121 EQIGYQEAFERGVKPFREFMIKNTREKDLALFLRIRNMPNP----QSFDDIPLTVVMSAF 176 Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236 MISE++ +FEI FL+ LPFL+IDM+V++++MAMGMMMLPPT ISLPFK++ F+L+DGW+L Sbjct: 177 MISEMKTAFEIAFLLYLPFLVIDMVVSSVLMAMGMMMLPPTMISLPFKLLIFILVDGWNL 236 Query: 237 LVENLVKSF 245 LV NLVKSF Sbjct: 237 LVMNLVKSF 245 >gi|296135631|ref|YP_003642873.1| flagellar biosynthetic protein FliP [Thiomonas intermedia K12] gi|295795753|gb|ADG30543.1| flagellar biosynthetic protein FliP [Thiomonas intermedia K12] Length = 255 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 96/231 (41%), Positives = 151/231 (65%), Gaps = 6/231 (2%) Query: 18 FAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTG 75 + L + PA + + V+T T L P +L+M+T F R IIV S+L+ Sbjct: 28 ASAQVLPAFTSSPAAGGGTEYSLSVQTLLFMTALVFLPAMLLMMTAFTRIIIVLSLLKQA 87 Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVF 135 +G +VPP+ VI+ L+LF+TF+VMSP L++ ++ I+PLM+NQIT A+Q A P F Sbjct: 88 LGTTTVPPSQVIVGLSLFLTFFVMSPVLNQVNDVAIKPLMDNQITMQQALQTGAAPLRTF 147 Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195 M TR++DL+LF+ ++ + K + +LIP+F+ SEL+ +F+IGF+I +PF Sbjct: 148 MLGQTRQEDLALFVKLSGHK----ALDKPEDTPMTLLIPAFVTSELKTAFQIGFVIFIPF 203 Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 LIIDM+VA ++M+MGMMML P ++S P K++ FVL+ GW L++ +L++SF+ Sbjct: 204 LIIDMVVAAVLMSMGMMMLSPVTVSFPLKLMLFVLVGGWELVIGSLMQSFV 254 >gi|296273474|ref|YP_003656105.1| flagellar biosynthetic protein FliP [Arcobacter nitrofigilis DSM 7299] gi|296097648|gb|ADG93598.1| flagellar biosynthetic protein FliP [Arcobacter nitrofigilis DSM 7299] Length = 242 Score = 191 bits (485), Expect = 9e-47, Method: Composition-based stats. Identities = 108/244 (44%), Positives = 151/244 (61%), Gaps = 8/244 (3%) Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIA---PILLIMVTC 61 ALF+ + L FA +L + A + V+T I IL + P LL+MVT Sbjct: 3 IILALFIFSISL-FAADNLPVINLSIASIDQPAQFVKTINIAIILILLAMAPTLLLMVTS 61 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F R IIV S+LR MG+ PPN ++IS+AL +T ++M P S GI+P M +I Sbjct: 62 FTRLIIVLSLLRQAMGLQQAPPNQIVISMALILTIFIMEPYAKTSYNEGIKPYMEEKIGY 121 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 A + +PF FM NTRE+D++LF + + D + +L+P+F++SEL Sbjct: 122 EEAFAKSVKPFKEFMIKNTREEDIALFYRIKKEKNPK----NIDDVALTLLMPAFIVSEL 177 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 R +FEIGFLI LPFL+ID+IVA+I+M++GMMMLPP ISLP KVIFF++IDGW L++ NL Sbjct: 178 RTAFEIGFLIFLPFLVIDIIVASILMSLGMMMLPPVMISLPIKVIFFIIIDGWQLIIGNL 237 Query: 242 VKSF 245 +SF Sbjct: 238 AQSF 241 >gi|325981181|ref|YP_004293583.1| flagellar biosynthetic protein FliP [Nitrosomonas sp. AL212] gi|325530700|gb|ADZ25421.1| flagellar biosynthetic protein FliP [Nitrosomonas sp. AL212] Length = 248 Score = 191 bits (485), Expect = 9e-47, Method: Composition-based stats. Identities = 97/241 (40%), Positives = 151/241 (62%), Gaps = 5/241 (2%) Query: 6 FFALFLVTPELVFAKSSLHDVMNIPADLS-ISTWIVRTFGIFTILSIAPILLIMVTCFPR 64 F A F+ P AD S T ++T + T L+ P L++M++ F R Sbjct: 10 FLAGFIALPAFAQQSGFPAFTSTANADGSATYTLSLQTLLLLTSLTFLPALVLMMSSFTR 69 Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124 IIV S+LR +G S PPN V++ LALF+TF++MSP +DR P ++I+ A Sbjct: 70 IIIVLSLLRMALGTQSSPPNQVLLGLALFLTFFIMSPVIDRVYSEAYLPFSEDKISIMEA 129 Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184 ++ + P FM + TRE DL+LF+ ++ S ++ D + +IL+P+++ SEL+ + Sbjct: 130 AEKASVPLKSFMLHQTRETDLALFVQISES----EELESRDQVPLKILVPAYITSELKTA 185 Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 F+IGF+I +PFLIID++V++++MAMGMMML P ISLPFK++ FVL+DGW L++ +L +S Sbjct: 186 FQIGFVIFIPFLIIDLVVSSVLMAMGMMMLSPMIISLPFKLMLFVLVDGWHLIIGSLTQS 245 Query: 245 F 245 F Sbjct: 246 F 246 >gi|51894127|ref|YP_076818.1| flagellar biosynthesis protein FliP [Symbiobacterium thermophilum IAM 14863] gi|51857816|dbj|BAD41974.1| flagellar biosynthesis protein [Symbiobacterium thermophilum IAM 14863] Length = 253 Score = 191 bits (485), Expect = 9e-47, Method: Composition-based stats. Identities = 88/194 (45%), Positives = 130/194 (67%), Gaps = 4/194 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP ++I+ T F R I+VF +RT +G+ PPN V+I LALF+T VM PT + + Sbjct: 62 APAIIILCTSFTRIIVVFGFIRTALGLQQTPPNQVLIGLALFLTAAVMMPTFSEINQTAV 121 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 QP + +I + AI+R A P FM TRE DL L ++++ + + + Sbjct: 122 QPYLAGEIDQVEAIERGALPLKAFMLRQTREADLGLMLEVSGQPAPE----GPEDVSFLT 177 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 ++P+F +SEL+ +F +GFLI LPF+IID+I A+++M++GMMM+PPT ISLPFKV+ FVL+ Sbjct: 178 VVPAFALSELKTAFTMGFLIYLPFIIIDLITASLMMSLGMMMVPPTLISLPFKVLLFVLV 237 Query: 232 DGWSLLVENLVKSF 245 DGW L+VE+LV+SF Sbjct: 238 DGWHLVVESLVRSF 251 >gi|146277690|ref|YP_001167849.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides ATCC 17025] gi|145555931|gb|ABP70544.1| flagellar biosynthetic protein FliP [Rhodobacter sphaeroides ATCC 17025] Length = 246 Score = 190 bits (484), Expect = 9e-47, Method: Composition-based stats. Identities = 90/244 (36%), Positives = 143/244 (58%), Gaps = 4/244 (1%) Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61 +R L+ FA+ + + + ++ + T L++ P L++ ++ Sbjct: 4 LRVTALVAALLLSGPAFAQGLPALTITESTGGTSYSLSLQILALMTALTVLPSLVLGMSA 63 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F R IIV SILR +G PPN V+I+LALF+TF+VM PTL + P ++ ++ Sbjct: 64 FTRIIIVLSILRQALGTQQTPPNQVLIALALFLTFFVMQPTLGTLYAEALSPFLDGRLAA 123 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 AI+R F+ NTR+ DL +F D+A + + + L+P+FM SEL Sbjct: 124 EPAIERGGAIMKEFLIANTRQNDLLMFSDLAGAG----PYEDPRDVPFSTLLPAFMTSEL 179 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 + +F+IGFL+ LPFL+IDM++A+I+MA+GMMML P +SLPFK++ FVL+DGW+L V +L Sbjct: 180 KTAFQIGFLLFLPFLVIDMVIASILMALGMMMLSPMLVSLPFKLLLFVLVDGWALTVGSL 239 Query: 242 VKSF 245 ++ Sbjct: 240 AATY 243 >gi|289829471|ref|ZP_06547083.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 186 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 87/188 (46%), Positives = 131/188 (69%), Gaps = 4/188 (2%) Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 M+T F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP Sbjct: 1 MMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQ 60 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177 +I+ A+ + A+P FM TRE DL+LF +A+S + + + RIL+P+++ Sbjct: 61 KISMQEALDKGAQPLRAFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYV 116 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LL Sbjct: 117 TSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLL 176 Query: 238 VENLVKSF 245 V +L +SF Sbjct: 177 VGSLAQSF 184 >gi|119385379|ref|YP_916435.1| flagellar biosynthesis protein FliP [Paracoccus denitrificans PD1222] gi|119375146|gb|ABL70739.1| flagellar biosynthetic protein FliP [Paracoccus denitrificans PD1222] Length = 241 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 95/247 (38%), Positives = 148/247 (59%), Gaps = 9/247 (3%) Query: 1 MIRYCFFALFLVTPELVFAKSS--LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIM 58 MIR L+ P+ A+ + + + + T LS+AP + IM Sbjct: 1 MIRLVLVLAVLLLPQPGSAQDLPLIDAAGLDAVAGGVGRHAITLLAVMTALSLAPGIAIM 60 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 VTCFP + V SILR +G+ PPN++I+SLA+F+T++VM+P L + ++ PL + + Sbjct: 61 VTCFPFIVTVLSILRQSLGLQQSPPNMLIVSLAMFLTWFVMNPVLTEAWDVAGAPLRDGR 120 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 IT A +R PF FM + T + L+ ++A D +LIP+FMI Sbjct: 121 ITVEQAFERGIVPFRGFMEHRTDPEMLATLAEIAPDPEAAPDR-------LSVLIPAFMI 173 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SE++R+FEIGFL+ LPFLIID++V+ ++M+MGMMM+PP ++LPFK+ FFV++DGW ++ Sbjct: 174 SEIQRAFEIGFLVALPFLIIDLVVSAVLMSMGMMMVPPVVVALPFKLAFFVVVDGWGMIA 233 Query: 239 ENLVKSF 245 LV+S+ Sbjct: 234 AALVRSY 240 >gi|94500290|ref|ZP_01306823.1| Flagellar transport protein FliP [Oceanobacter sp. RED65] gi|94427589|gb|EAT12566.1| Flagellar transport protein FliP [Oceanobacter sp. RED65] Length = 251 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 94/248 (37%), Positives = 146/248 (58%), Gaps = 8/248 (3%) Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNI----PADLSISTWIVRTFGIFTILSIAPILLI 57 IR + A L+ P L +A+++ P + ++ I TIL++ P L+I Sbjct: 6 IRLVWVAALLLLPSLGWAENTFDIPAITYEEDPNGNGRYSVTIQILAIMTILTVLPSLVI 65 Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 M+T F R I+VF+ILR +G+ P N +++ L LF+T ++M P + E IQP + Sbjct: 66 MMTSFTRIIVVFAILRQALGLQQTPSNQILLGLTLFLTLFIMMPIFNVINETAIQPYLEE 125 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177 +I A+ P FM RE DL++F+ ++ + T + ILIP+F+ Sbjct: 126 KILPKEALDLAIIPIKEFMLAQVRETDLNMFVRLSGETGIQTPM----DTPLHILIPAFI 181 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 SEL+ +F+IGF+I +PFLIID++VA+I+MAMGMMML P ISLPFK++ FVL+DGW ++ Sbjct: 182 TSELKTAFQIGFMIFIPFLIIDLVVASILMAMGMMMLSPIIISLPFKIMLFVLVDGWVMI 241 Query: 238 VENLVKSF 245 + L S+ Sbjct: 242 IGTLAASY 249 >gi|146282916|ref|YP_001173069.1| flagellar biosynthetic protein FliP [Pseudomonas stutzeri A1501] gi|145571121|gb|ABP80227.1| flagellar biosynthetic protein FliP [Pseudomonas stutzeri A1501] Length = 199 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 93/200 (46%), Positives = 130/200 (65%), Gaps = 4/200 (2%) Query: 46 FTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDR 105 T LS P ++++T F R IIVFSILR +G+ P N ++I L LF+T ++M+P DR Sbjct: 1 MTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILIGLTLFLTLFIMAPVFDR 60 Query: 106 SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165 + +QP ++ QI AI R P FM TRE DL LF+ ++ TDI + Sbjct: 61 INQDALQPYLSEQIPAQEAIARAEVPLKNFMLAQTRESDLELFVRLSQR----TDIASPE 116 Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225 IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA+++MAMGMMML P ISLPFK+ Sbjct: 117 AAPMTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKI 176 Query: 226 IFFVLIDGWSLLVENLVKSF 245 + FVL+DGW L++ L SF Sbjct: 177 MLFVLVDGWGLIIGTLAGSF 196 >gi|291562035|emb|CBL40851.1| flagellar biosynthetic protein FliP [butyrate-producing bacterium SS3/4] Length = 218 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 79/212 (37%), Positives = 131/212 (61%), Gaps = 4/212 (1%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 + + + T ++ P +++M++ F R II+ S R MG+ PPN+V+ +ALF Sbjct: 10 GGNVPALDIIMLLTFAALLPSIVVMMSSFMRIIIILSFTRNAMGVQQTPPNMVLTGMALF 69 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 ++ Y+MSP + + + +P N +IT+ A+ R+A+P FM NT + L F+ M+ Sbjct: 70 LSLYIMSPVIGQINTVAYEPYKNGEITQQEAVSRMADPLKQFMLRNTEKDTLDHFVQMSK 129 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 + +++P+FM SEL++ F GFLI LPFL+ID++V+T +M+MGM+M Sbjct: 130 QEVKK----DVKEYPLTVVVPAFMTSELKKGFLAGFLIYLPFLLIDIVVSTTLMSMGMVM 185 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LPPT +SLPFK++ F+ ++GW LL +LV+SF Sbjct: 186 LPPTMVSLPFKLLLFITVNGWELLFSSLVQSF 217 >gi|227873535|ref|ZP_03991780.1| flagellar biosynthesis protein FliP [Oribacterium sinus F0268] gi|227840625|gb|EEJ51010.1| flagellar biosynthesis protein FliP [Oribacterium sinus F0268] Length = 218 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 79/217 (36%), Positives = 127/217 (58%), Gaps = 4/217 (1%) Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88 + S + + T++++ P ++IM+T F R II+ S R MG+ PPN+V+ Sbjct: 5 LSGLNGGSVPTLELIYLLTLVALLPSIVIMMTSFTRIIIILSFTRNAMGVQQTPPNMVLA 64 Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148 +A F+T Y+MSPTL++ +P +T+ A+ + + FM NT + L F Sbjct: 65 GIAFFLTLYIMSPTLNKINTEAYEPYKKGTVTQEEALNIMGKDMKEFMLRNTEKATLDRF 124 Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208 + M+ + ++ P+FM SEL+R F GFLI LPFL+ID++V+T +MA Sbjct: 125 VSMSKVELQKDPK----DYPLTVVTPAFMTSELKRGFTAGFLIYLPFLLIDVVVSTTLMA 180 Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MGM+MLPP +S+PFK++ F+ +DGW+LL ++V SF Sbjct: 181 MGMVMLPPAMVSMPFKLLLFITVDGWNLLFSSVVNSF 217 >gi|220917690|ref|YP_002492994.1| flagellar biosynthetic protein FliP [Anaeromyxobacter dehalogenans 2CP-1] gi|219955544|gb|ACL65928.1| flagellar biosynthetic protein FliP [Anaeromyxobacter dehalogenans 2CP-1] Length = 236 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 93/240 (38%), Positives = 140/240 (58%), Gaps = 5/240 (2%) Query: 6 FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65 AL L L A + + I + S V+ F + T LS A LL+ VT F R Sbjct: 1 MSALGLPLAALSVASPAAEGALQISVNGGGSA-PVKLFLVLTALSFATALLVSVTSFTRI 59 Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 +IV S LR +G VPPN V+I LAL ++ +VMSPT R + P ++++I + A+ Sbjct: 60 VIVLSFLRQALGTPQVPPNQVLIGLALVLSCFVMSPTATRVYGDALGPYLDDRIGQAEAL 119 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185 +R + P FM TR++DL+LF +++ + D I I +P+FMISEL +F Sbjct: 120 ERASGPVREFMLRQTRDQDLALFYEISATPRP----ASGDAIPMSIAVPAFMISELTTAF 175 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +G + +P L++D++V+ I+M+MGMMM+PPT I+LP K+ FV+ DGW L+V L +SF Sbjct: 176 RMGLFLYVPLLLVDLLVSAILMSMGMMMVPPTLIALPVKIGLFVMADGWRLVVGALARSF 235 >gi|296124299|ref|YP_003632077.1| flagellar biosynthetic protein FliP [Planctomyces limnophilus DSM 3776] gi|296016639|gb|ADG69878.1| flagellar biosynthetic protein FliP [Planctomyces limnophilus DSM 3776] Length = 339 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 91/250 (36%), Positives = 134/250 (53%), Gaps = 15/250 (6%) Query: 10 FLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVF 69 P L + S + ++ + T+L++AP +L+M TCF RF+IV Sbjct: 85 LAFPPGLAAPALPTGLDASNLTSRSGLSNTLKIMFLLTVLTLAPSILMMTTCFIRFVIVL 144 Query: 70 SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM-----NNQITETTA 124 +LR +G +PPN VI SL LF+TF VM+P + E GI+P I E TA Sbjct: 145 GLLRQALGTQQLPPNQVITSLCLFLTFLVMAPIWQEAYEAGIRPYTAPRAGEAAIDEWTA 204 Query: 125 IQRVAEPFWVFMRNNTRE----KDLSLFMDMAHSSHRNT------DITKNDHIEYRILIP 174 R P FM + +F+D + + T + + L+P Sbjct: 205 FNRTLVPIRRFMAEQIDRTGSSDSVWMFIDFMRPPQDSPALSTWKEPTTYEDVPLVALLP 264 Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234 ++++SEL+ SF I F I LPFLIIDM++++I+++MGMMMLPP ISLPFK++ FV+IDGW Sbjct: 265 AYVLSELKVSFLIAFQIYLPFLIIDMVISSILISMGMMMLPPVLISLPFKLLLFVMIDGW 324 Query: 235 SLLVENLVKS 244 L V L++S Sbjct: 325 FLTVGMLLES 334 >gi|254487121|ref|ZP_05100326.1| flagellar biosynthetic protein FliP [Roseobacter sp. GAI101] gi|214043990|gb|EEB84628.1| flagellar biosynthetic protein FliP [Roseobacter sp. GAI101] Length = 245 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 100/240 (41%), Positives = 150/240 (62%), Gaps = 6/240 (2%) Query: 6 FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65 AL + P A+ +++ ++S ++ F + T+LS+AP + +MVTCFP Sbjct: 11 LAALLVFLPGFPLAQEV---SIDLGDQGALSARTIQLFVLITVLSLAPGIAVMVTCFPFL 67 Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 + V SILR +G+ PPN++I+SLALF+T+++M P + E G++PL N QI TA Sbjct: 68 VTVLSILRQAIGLQQSPPNMLIVSLALFLTYFIMEPVFTAAWENGLEPLANEQIDVETAF 127 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185 + EPF FM D + F MA + + +L+PSFM+SE+ R+F Sbjct: 128 AQAMEPFRQFMVGRL---DPATFTAMAELRPDTAGLALDLDAPLSVLVPSFMLSEITRAF 184 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +IGFL+ LPFLIID++VA I+M+MGMMM+PP +SLPFK+ FFV+ DGWSL+ +LV+S+ Sbjct: 185 QIGFLVYLPFLIIDLVVAAILMSMGMMMVPPAVVSLPFKLAFFVVADGWSLIAGSLVRSY 244 >gi|220934504|ref|YP_002513403.1| flagellar biosynthetic protein FliP [Thioalkalivibrio sp. HL-EbGR7] gi|219995814|gb|ACL72416.1| flagellar biosynthetic protein FliP [Thioalkalivibrio sp. HL-EbGR7] Length = 247 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 146/245 (59%), Gaps = 4/245 (1%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 + AL+L+ + +V P + ++ + T+LS+ P LIM+T Sbjct: 5 LSLLGVAALWLLAGPAAAQGLDVLNVTTAPDGAQTYSVTLQILILMTLLSLLPSALIMMT 64 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R IIV +ILR G+G P N ++I LALF+T +VM+P DR IQP M ++ Sbjct: 65 SFTRIIIVLAILRQGLGTTQTPSNQILIGLALFLTLFVMTPVFDRIHVEAIQPYMEESLS 124 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A+Q ++P FM TRE DL++F ++ + + + +L+ SF+ SE Sbjct: 125 MEEAVQTASQPIRQFMLAQTRESDLAMFARISGREG----FESPEDVPFTLLMASFLTSE 180 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +F+IGF++++PFLIID++VA+++M+MGM+ML P ISLPFK++ FVL+DGW+L++ Sbjct: 181 LKTAFQIGFMLLIPFLIIDLVVASVLMSMGMVMLSPLIISLPFKIMLFVLVDGWALIMGT 240 Query: 241 LVKSF 245 L SF Sbjct: 241 LAASF 245 >gi|71282453|ref|YP_268254.1| flagellar biosynthesis protein FliP [Colwellia psychrerythraea 34H] gi|71148193|gb|AAZ28666.1| flagellar biosynthetic protein FliP [Colwellia psychrerythraea 34H] Length = 252 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 87/224 (38%), Positives = 131/224 (58%), Gaps = 4/224 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 S + P + ++ T LS P +IM+T F R ++V +ILR G+ Sbjct: 29 SALTLTTNPDGSQEYSVNLQILIFMTALSFIPAAVIMMTSFTRIVVVMAILRQAFGLQQT 88 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 P N VII L LFMT ++M+P ++ IQP ++ +T T AI P FM TR Sbjct: 89 PSNQVIIGLTLFMTLFIMTPVYNQIDRTAIQPYLSENLTSTEAINLGKIPLRAFMLEQTR 148 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 KDL MA + + + ++IP+F+ISEL+ +F+IGF++ +PFLIID++ Sbjct: 149 VKDLDTLAAMAGI----DAVDEPTDLPMTVIIPAFIISELKTAFQIGFILFIPFLIIDLV 204 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 VA+I+MAMGMMML P +SLPFK++ FVL+DGW+L++ + S+ Sbjct: 205 VASILMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLVIGTIATSY 248 >gi|326386956|ref|ZP_08208569.1| flagellar biosynthesis protein FliP [Novosphingobium nitrogenifigens DSM 19370] gi|326208565|gb|EGD59369.1| flagellar biosynthesis protein FliP [Novosphingobium nitrogenifigens DSM 19370] Length = 300 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 86/194 (44%), Positives = 128/194 (65%), Gaps = 4/194 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P L++M+T F R +IV ++LR +G+ PPN V+I L+LF++ +VM PTLDR IQ Sbjct: 111 PSLVLMMTSFTRILIVLALLRQALGLQQSPPNPVLIGLSLFLSLFVMGPTLDRVNANAIQ 170 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P I A F FM TRE DL +F DMAH+ + + IL Sbjct: 171 PYSAGTINAEQAFVNGGREFHAFMIRQTREHDLLMFADMAHAPR----FASPADVPWTIL 226 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 +P+F+ SEL+ +F+IGF++ LPFL+ID++V++++M++GMMM+ PT ISLPFK++ FVL+D Sbjct: 227 LPAFVTSELKTAFQIGFMLFLPFLVIDLVVSSVLMSLGMMMMSPTVISLPFKLLLFVLVD 286 Query: 233 GWSLLVENLVKSFI 246 GW+LL+ +L SF+ Sbjct: 287 GWALLMGSLASSFV 300 >gi|289208347|ref|YP_003460413.1| flagellar biosynthetic protein FliP [Thioalkalivibrio sp. K90mix] gi|288943978|gb|ADC71677.1| flagellar biosynthetic protein FliP [Thioalkalivibrio sp. K90mix] Length = 256 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 82/189 (43%), Positives = 123/189 (65%), Gaps = 4/189 (2%) Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116 IM+T F R ++V +ILR G+G P N ++I LA F+T +VM+P D E + P MN Sbjct: 70 IMMTAFTRILVVLAILRQGLGTTQTPSNQILIGLAFFLTLFVMAPVFDEIYETAVVPYMN 129 Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176 ++ +Q +P FM +TRE D+ +F ++ D I R+L+P+F Sbjct: 130 EEMGTEEVLQAGVQPLREFMLAHTRESDIRMFAEINGIDG----FDDADDIPLRLLVPAF 185 Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236 + SEL+ +F+IGFLI++PFLIID++VA+++M+MGM+ML P ISLPFKV+ FVL+DGW+L Sbjct: 186 VTSELKTAFQIGFLILIPFLIIDLVVASVLMSMGMVMLSPLIISLPFKVMLFVLVDGWAL 245 Query: 237 LVENLVKSF 245 ++ L SF Sbjct: 246 MMNTLATSF 254 >gi|294084391|ref|YP_003551149.1| flagellar biosynthetic protein FliP [Candidatus Puniceispirillum marinum IMCC1322] gi|292663964|gb|ADE39065.1| flagellar biosynthetic protein FliP [Candidatus Puniceispirillum marinum IMCC1322] Length = 261 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 85/221 (38%), Positives = 138/221 (62%), Gaps = 4/221 (1%) Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84 +V S + ++ + T L++ P L++ +T F R IIV SILR MG PPN Sbjct: 42 NVTGSEDGTSTYSLSLQILALMTALTVLPSLVLGMTSFTRIIIVLSILRQAMGTQQTPPN 101 Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144 V++++ALF+TF++M+PT + +M + P M + TA+ F+ NTR D Sbjct: 102 QVLVAIALFLTFFIMAPTFTQLNDMALSPYMEGTMPMETALSDGTNIMKDFLVQNTRVTD 161 Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204 L +F +MA +T + +L+P+F+ SEL+ +F+IGFL+ LPFL+IDM++A+ Sbjct: 162 LVMFTEMAG----DTTYEDPKDVPLTVLLPAFITSELKTAFQIGFLLFLPFLVIDMVIAS 217 Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 I+M++GMMML P ++LPFK++ FVL+DGW++ V +LV ++ Sbjct: 218 ILMSLGMMMLSPMLVALPFKLLLFVLVDGWAMTVGSLVATY 258 >gi|254457934|ref|ZP_05071361.1| flagellar biosynthetic protein FliP [Campylobacterales bacterium GD 1] gi|207085327|gb|EDZ62612.1| flagellar biosynthetic protein FliP [Campylobacterales bacterium GD 1] Length = 244 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 100/246 (40%), Positives = 153/246 (62%), Gaps = 6/246 (2%) Query: 1 MIRYCFFALFLVTPELVFAKS--SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIM 58 M+R L V+ A + +++ ++ P + + T+L +AP ++++ Sbjct: 1 MLRLLIVILAFVSILGAEAVTIPTMNFALSAPDTPQQLVSSLNVLVVLTLLFLAPSMVLV 60 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F RF+IVF LR +G VPP +++ LA+ +TF+VM P ++ + GI+P + + Sbjct: 61 MTTFTRFVIVFGFLRQALGTQQVPPTQLLVMLAMILTFFVMEPIGQKAYDNGIKPYIEEK 120 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I A ++ PF FM NTREKDL+LF + + T + ++IPSF+I Sbjct: 121 IGYEEAFEKSTLPFKNFMIRNTREKDLALFFRIRGMENPAT----VSDVPLSVIIPSFVI 176 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +FEIGFL+ LPFL+IDM+VA+I+M+MGMMMLPP ISLPFK++ FVLIDGWSLL+ Sbjct: 177 SELKTAFEIGFLLFLPFLVIDMVVASILMSMGMMMLPPVMISLPFKILVFVLIDGWSLLI 236 Query: 239 ENLVKS 244 NL+ + Sbjct: 237 GNLIAT 242 >gi|254462066|ref|ZP_05075482.1| flagellar biosynthetic protein FliP [Rhodobacterales bacterium HTCC2083] gi|206678655|gb|EDZ43142.1| flagellar biosynthetic protein FliP [Rhodobacteraceae bacterium HTCC2083] Length = 256 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 92/240 (38%), Positives = 151/240 (62%), Gaps = 9/240 (3%) Query: 12 VTPELVFAKSSLHD-----VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66 + P + A++++ V + + ++ + T L+I P L+ +T F R I Sbjct: 20 LVPSISLAQTAVEGMPALNVTTGADGETQYSLSLQILALMTALTILPSFLLGITAFTRVI 79 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IV SILR MG PPN V+IS+ALF+TFY+M+PT ++ E I P +N Q+ AI+ Sbjct: 80 IVLSILRQAMGTQQTPPNQVLISIALFLTFYIMAPTFEQIYEKAISPYLNGQMQPVAAIE 139 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 A F+ NTRE +L++F +MA + N+ + Y +L+P+F+ SEL+ +F+ Sbjct: 140 TGAAILSEFLILNTRESELAMFAEMAG----DAPYESNEDVPYTVLMPAFITSELKTAFQ 195 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 IGFL+ LPFL+ID+++A+I+MA+GMMML P +SLPFK++ FVL+DGW++ + ++ +++ Sbjct: 196 IGFLLFLPFLVIDLVIASILMALGMMMLSPMLVSLPFKLLLFVLVDGWAMTIGSIASTYV 255 >gi|54297702|ref|YP_124071.1| flagellar biosynthesis protein FliP [Legionella pneumophila str. Paris] gi|53751487|emb|CAH12905.1| Flagellar biosynthetic protein FliP [Legionella pneumophila str. Paris] Length = 249 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 98/226 (43%), Positives = 144/226 (63%), Gaps = 7/226 (3%) Query: 22 SLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79 S V P ++ + + T+L++ P LL+ +T F R IIV SILR +GM Sbjct: 26 SFPVVTMQPGTNGSQSYSINLQILIFMTLLTVLPGLLMAMTSFTRIIIVLSILRQAIGMA 85 Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139 P N ++I +ALFMT++VMSP ++ E IQP MN +I + A+ +P FM N Sbjct: 86 QTPTNQILIGIALFMTYFVMSPVFNKINETAIQPYMNERIDFSLALSNAQKPLRQFMLNQ 145 Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199 TR+ DLSLF AH+ + D I +LIP+F+ SEL+ +F+IGF++ LPFLIID Sbjct: 146 TRKNDLSLFEKFAHNVPK-----TLDEIPMSVLIPAFITSELKTAFQIGFVLFLPFLIID 200 Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++V++++MAMGMMML P ISLPFK++ FV++DGW+L++ +L SF Sbjct: 201 LVVSSLLMAMGMMMLSPLIISLPFKIMLFVMVDGWTLVLGSLASSF 246 >gi|87119473|ref|ZP_01075370.1| Flagellar transport protein FliP [Marinomonas sp. MED121] gi|86164949|gb|EAQ66217.1| Flagellar transport protein FliP [Marinomonas sp. MED121] Length = 249 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 88/229 (38%), Positives = 146/229 (63%), Gaps = 5/229 (2%) Query: 19 AKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 A+ L + D + V + I T L++ P L M+T F R ++V +ILR + Sbjct: 22 AEVGLPALTVTTNDDGTQDYSVSLQILFIMTALTLLPAALTMMTAFTRIVVVLAILRQAI 81 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G+ P N +++ +ALF+T ++M+PTLD+ + +QP + +IT AI++ + P FM Sbjct: 82 GLQQTPSNQIMVGMALFLTLFIMTPTLDKINAVALQPYLEEEITSIQAIEKASVPIRDFM 141 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 TRE D++LF+ +A + I + + + IL+P+F+ SEL+ +F+IGF+I +PFL Sbjct: 142 LAQTRESDIALFVKLAG---KEGQIESLETLPFTILMPAFVASELKTAFQIGFMIFIPFL 198 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++DM+VA+++MAMGMMML P ISLPFK++ FV++DGW++++ L SF Sbjct: 199 VLDMVVASVLMAMGMMMLSPIIISLPFKIMLFVMVDGWAMIMGTLAASF 247 >gi|126697832|ref|YP_001086729.1| flagellar biosynthesis protein FliP [Clostridium difficile 630] gi|255099428|ref|ZP_05328405.1| flagellar biosynthesis protein FliP [Clostridium difficile QCD-63q42] gi|115249269|emb|CAJ67082.1| Flagellar biosynthesis protein FliP [Clostridium difficile] Length = 221 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 80/220 (36%), Positives = 134/220 (60%), Gaps = 3/220 (1%) Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85 + +P T ++ F T L P ++ M+T F R +I S L++ +G P+ Sbjct: 4 LSKLPLADVPYTSSMQLFLFLTALMFLPFVMFMMTSFVRIVISLSFLKSALGAQQAIPSQ 63 Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145 +++ LA+ +T ++M P L+ E +QP M ++T A++ P F+ TR+ DL Sbjct: 64 ILVGLAIVLTIFIMRPVLNEINEKALQPYMKEEVTMEEAMKEAEGPIKEFLLTQTRQTDL 123 Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205 LF++ A + ++I +++P+F ISEL+ +F+IGFLI +PFLIID++VA++ Sbjct: 124 DLFVEQAGLKEKK---LTRENIPLSVVVPAFAISELKTAFQIGFLIYIPFLIIDLVVASV 180 Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +M+MGM MLPP ISLPFK++ FV++DGW+L+V+ L+ F Sbjct: 181 LMSMGMFMLPPVMISLPFKLLLFVMVDGWNLIVKTLILGF 220 >gi|91200236|emb|CAJ73280.1| strongly similar to polar flagellar assembly protein FliP [Candidatus Kuenenia stuttgartiensis] Length = 254 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 85/208 (40%), Positives = 134/208 (64%), Gaps = 4/208 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 +++ T L++ P LL+ +T F R IIV S +R + ++PPN ++I +ALF+TF Sbjct: 49 AEVLKIVFFLTGLTLLPGLLLAMTSFTRIIIVLSFVRKALSFHTLPPNQILIGIALFLTF 108 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 +VM+P +QP + +IT+ A+++ EP FM TR+KD++LF ++A Sbjct: 109 FVMTPVWTAINSDALQPYIKEEITQDEALKKGIEPVRKFMLKQTRKKDIALFSNIAKVEK 168 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 I ILIP+F+ SEL+ SF++GFL+ LPFL+ID++VA ++ +MGM MLPP Sbjct: 169 P----FSASDIPMHILIPAFVTSELKTSFQMGFLLFLPFLVIDLVVACVLTSMGMFMLPP 224 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKS 244 IS+PFK+I FVL+DGW L++++L+ S Sbjct: 225 VMISMPFKLILFVLVDGWQLIIQSLITS 252 >gi|157363490|ref|YP_001470257.1| flagellar biosynthesis protein FliP [Thermotoga lettingae TMO] gi|157314094|gb|ABV33193.1| flagellar biosynthetic protein FliP [Thermotoga lettingae TMO] Length = 250 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 81/208 (38%), Positives = 123/208 (59%), Gaps = 3/208 (1%) Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98 + I T+L++AP +LI+ T F R I+VFS LR +G PP+ V+I LALF+TF++ Sbjct: 43 TLEILLIITVLALAPSILILFTSFTRIIVVFSFLRNALGTRQTPPSQVLIGLALFLTFFI 102 Query: 99 MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN-NTREKDLSLFMDMAHSSHR 157 M P + + P M +I R+ FM + +A S + Sbjct: 103 MQPVWNDIYNDALTPYMEKEIGYEELFSRMIGRVRQFMLKELVDHHNEDNVFLLASSVGK 162 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 D K + ILIP+F++ EL F++G L+ +PF++IDMIV++I++AMGM+M+PP Sbjct: 163 KFD--KIEDAPNSILIPAFVLGELEIGFKMGVLLYIPFIVIDMIVSSILLAMGMIMIPPV 220 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLPFKV+ F++++GW LLV L+KSF Sbjct: 221 LISLPFKVLLFIVVNGWDLLVSGLIKSF 248 >gi|300817291|ref|ZP_07097509.1| flagellar biosynthetic protein FliP [Escherichia coli MS 107-1] gi|300530267|gb|EFK51329.1| flagellar biosynthetic protein FliP [Escherichia coli MS 107-1] Length = 276 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 83/214 (38%), Positives = 132/214 (61%), Gaps = 6/214 (2%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 + + ++ + T++ + P +++M+TCF RFIIV S+LR +G+ PPN ++I + Sbjct: 36 GNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGI 95 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 AL +T VM P + + P N+QIT T A+ A P FM T +K ++ M Sbjct: 96 ALSLTMLVMRPIWLNIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMT 155 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 + + D + I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMG Sbjct: 156 IGGAKGHAADQ------DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMG 209 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 MMML P +SLPFK++ FVLIDGWSL + L S Sbjct: 210 MMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243 >gi|54294676|ref|YP_127091.1| flagellar biosynthesis protein FliP [Legionella pneumophila str. Lens] gi|53754508|emb|CAH15992.1| Flagellar biosynthetic protein FliP [Legionella pneumophila str. Lens] Length = 249 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 98/226 (43%), Positives = 144/226 (63%), Gaps = 7/226 (3%) Query: 22 SLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79 S V P ++ + + T+L++ P LL+ +T F R IIV SILR +GM Sbjct: 26 SFPVVTMQPGTNGSQSYSINLQILIFMTLLTVLPGLLMAMTSFTRIIIVLSILRQAIGMA 85 Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139 P N ++I +ALFMT++VMSP ++ E IQP MN +I + A+ +P FM N Sbjct: 86 QTPTNQILIGIALFMTYFVMSPVFNKINETAIQPYMNERIDFSLALSNAQKPLRQFMLNQ 145 Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199 TR+ DLSLF AH+ + D I +LIP+F+ SEL+ +F+IGF++ LPFLIID Sbjct: 146 TRKNDLSLFEKFAHNVPK-----TLDEIPMSVLIPAFITSELKTAFQIGFILFLPFLIID 200 Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++V++++MAMGMMML P ISLPFK++ FV++DGW+L++ +L SF Sbjct: 201 LVVSSLLMAMGMMMLSPLIISLPFKIMLFVMVDGWTLVLGSLASSF 246 >gi|167630307|ref|YP_001680806.1| flagellar biosynthetic protein flip [Heliobacterium modesticaldum Ice1] gi|167593047|gb|ABZ84795.1| flagellar biosynthetic protein flip [Heliobacterium modesticaldum Ice1] Length = 243 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 95/245 (38%), Positives = 154/245 (62%), Gaps = 7/245 (2%) Query: 4 YCFFALFLVTPELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 A+F + A + V + + + + ++ + TILS+AP +LIM+T Sbjct: 2 VLLLAIFYWVTPALAAPLQIPTVSFGVESTENPTEVSTSLQILFLLTILSLAPSILIMMT 61 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 CF R I+V RT + + ++PPN V+I L LF+TF++M+PT + +QP + ++ Sbjct: 62 CFTRIIVVLHFTRTALALQTMPPNQVLIGLTLFLTFFIMAPTWSAINDQALQPYLAGTLS 121 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 + A+++ + P FM TREKDL+LF++M+ T I +++IP+F++SE Sbjct: 122 QEQALEKASTPLREFMLKQTREKDLALFVNMSDMEQPQTYR----DIPIKVVIPAFILSE 177 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +F+IG +I LPF++IDMIV +++M+MGMMMLPP ISLPFKV+ FVL+DGW L+V + Sbjct: 178 LKTAFQIGAVIYLPFIVIDMIVGSVLMSMGMMMLPPMMISLPFKVLVFVLVDGWYLIVRS 237 Query: 241 LVKSF 245 L+ S+ Sbjct: 238 LILSY 242 >gi|257457603|ref|ZP_05622770.1| flagellar biosynthetic protein FliP [Treponema vincentii ATCC 35580] gi|257444989|gb|EEV20065.1| flagellar biosynthetic protein FliP [Treponema vincentii ATCC 35580] Length = 269 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 76/230 (33%), Positives = 129/230 (56%), Gaps = 2/230 (0%) Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 A ++ + P + + ++ + T++++AP +L+++T F R I ++ + Sbjct: 42 AGAIPFVNLNIREPQNNREVAFSIQLLLLITLITLAPSILLLMTSFLRLSIALDFIKRAL 101 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 + VPP V+ +ALF+T ++M PT + +P+ + QI TA +P +FM Sbjct: 102 SLQQVPPTQVLNGIALFLTIFIMWPTFTEIYDKSFKPMADGQINIETAYTEAEKPLRLFM 161 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 + + S R + +LIP+F++ EL +F+IG + LPF+ Sbjct: 162 YKQMAHDPSH--IRLCMSLARMDKPNTLADVPTHVLIPAFILHELTVAFQIGIFLYLPFI 219 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 IIDM+VA+I+M+MGM+MLPP IS+PFK+I FVL+DGW+LLV L +SF+ Sbjct: 220 IIDMVVASILMSMGMIMLPPVQISMPFKLILFVLVDGWNLLVGQLFQSFL 269 >gi|291286235|ref|YP_003503051.1| flagellar biosynthetic protein FliP [Denitrovibrio acetiphilus DSM 12809] gi|290883395|gb|ADD67095.1| flagellar biosynthetic protein FliP [Denitrovibrio acetiphilus DSM 12809] Length = 243 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 98/245 (40%), Positives = 152/245 (62%), Gaps = 7/245 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 ++ F A+ P A + N P D++++ ++ + T +SIAP L+++T Sbjct: 5 LLAIPFTAVLAADPIPFPAFRFGMEQANSPQDVAVT---IQIMLLMTFISIAPGFLVLMT 61 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R +IVFS+LRT MG +PPN V++SLAL +TFY+M+P G+ P IT Sbjct: 62 SFTRIVIVFSLLRTAMGTSQMPPNQVLLSLALILTFYIMNPVFTEMYNKGLGPYFEETIT 121 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 + V +P FM NTR++D+ F+ ++ + T D I +L+ SF++SE Sbjct: 122 FQEMVSEVKKPLRKFMLYNTRKQDVRTFLSISGEARPKT----ADDIPDLVLLSSFVVSE 177 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L +F++GFL+ LPFLIID +VA+++++MGMMMLPP IS+PFK++ FVL+DGW L+V + Sbjct: 178 LTTAFQMGFLLFLPFLIIDFVVASVLLSMGMMMLPPVMISVPFKIMLFVLVDGWGLIVTS 237 Query: 241 LVKSF 245 +VKSF Sbjct: 238 IVKSF 242 >gi|328948400|ref|YP_004365737.1| flagellar biosynthetic protein FliP [Treponema succinifaciens DSM 2489] gi|328448724|gb|AEB14440.1| flagellar biosynthetic protein FliP [Treponema succinifaciens DSM 2489] Length = 281 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 84/226 (37%), Positives = 131/226 (57%), Gaps = 6/226 (2%) Query: 23 LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82 L P + + V+ + T+L++AP + I++TCF RF IV ++ + + VP Sbjct: 59 LSFSATAPRSGNEVAFSVQLLLLLTLLTLAPSIFILMTCFLRFSIVLDFIKRALSLQQVP 118 Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT-- 140 P V+ +A+FMT + M PT + QPL NN+IT T AI++ P +FM Sbjct: 119 PTAVLNGIAIFMTLFCMWPTFRQIYTDSFQPLSNNEITLTEAIEKAESPIRIFMFRQMGN 178 Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200 + + FM MA + +LIP++++ EL +F+IG L+ +PF++IDM Sbjct: 179 DKNSIRTFMTMAGLGRP----ANASDVPTYVLIPAYILHELTVAFKIGILLYIPFIVIDM 234 Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +VA+I+M+MGMMMLPP IS+PFK++ FVL+DGW LL + L S + Sbjct: 235 VVASILMSMGMMMLPPVQISMPFKLMLFVLVDGWHLLTQQLFVSVL 280 >gi|114320138|ref|YP_741821.1| flagellar biosynthesis protein FliP [Alkalilimnicola ehrlichii MLHE-1] gi|114226532|gb|ABI56331.1| flagellar biosynthetic protein FliP [Alkalilimnicola ehrlichii MLHE-1] Length = 250 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 100/251 (39%), Positives = 147/251 (58%), Gaps = 10/251 (3%) Query: 1 MIRYCFFALF----LVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPI 54 M R F L L P +V A+ + + I TW + + + T+L++ P Sbjct: 2 MARRTFLILIALAGLTAPVVVLAQPPGLEALRITEGEDGQTWSLSLQVLILMTLLTLLPA 61 Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114 L+M+T F R IIV +ILR MG S P N V+I LALF+T +VM+P + + P Sbjct: 62 GLLMMTSFTRIIIVLAILRQAMGTASTPSNQVLIGLALFLTLFVMAPVFQEVHDTALAPY 121 Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174 + ++ A++ +EP FM TRE DL LF+ +A + D + + +L+P Sbjct: 122 LAEEMAPDEALEAASEPMRGFMIAQTRESDLGLFLRIAG----YDQVDSPDDVPFTVLVP 177 Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234 +FM SEL+ +F IGF+I LPFL+ID++VA+ +M+MGM+ML P ISLPFK++ FVL+DGW Sbjct: 178 AFMTSELKTAFTIGFIIYLPFLVIDLVVASTLMSMGMLMLSPMIISLPFKILLFVLVDGW 237 Query: 235 SLLVENLVKSF 245 SLL+ L SF Sbjct: 238 SLLMGTLASSF 248 >gi|226944502|ref|YP_002799575.1| flagellar biosynthetic protein [Azotobacter vinelandii DJ] gi|226719429|gb|ACO78600.1| flagellar biosynthetic protein [Azotobacter vinelandii DJ] Length = 252 Score = 189 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 96/244 (39%), Positives = 153/244 (62%), Gaps = 6/244 (2%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTI--LSIAPILLIMVTC 61 + AL L+ A ++L + + P W + + + ++ P LL+M+T Sbjct: 11 WPAAALGLILCLPASALAALPALTSKPLAGGGQQWSLSLQTLLLLSSMAFLPALLLMMTA 70 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F R IIV +LRT +G + PPN V++ LALF+T ++MSP LDR+ + P ++I Sbjct: 71 FTRIIIVLGLLRTAIGTPAAPPNQVLLGLALFLTLFIMSPVLDRTYQSAWLPFSRDEIGF 130 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 ++ ++PF FM TRE DL+LF +A R ++ + + R+L+P+F+ SEL Sbjct: 131 EQFLETGSQPFREFMLAQTRESDLALFARLA----RLGELEGPEQVPLRVLMPAFVTSEL 186 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 + +F+IGF I +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L Sbjct: 187 KTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLIGSL 246 Query: 242 VKSF 245 +SF Sbjct: 247 AQSF 250 >gi|283834476|ref|ZP_06354217.1| flagellar biosynthetic protein FliP [Citrobacter youngae ATCC 29220] gi|291070023|gb|EFE08132.1| flagellar biosynthetic protein FliP [Citrobacter youngae ATCC 29220] Length = 252 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 88/230 (38%), Positives = 140/230 (60%), Gaps = 8/230 (3%) Query: 17 VFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74 A+ ++N+ + + + V + + T++ I P L++M+TCF RFIIV S+LR Sbjct: 22 ACAQGGDIPLLNVISHGNSQEYSVKIQVLILMTLVGILPTLVLMMTCFTRFIIVLSLLRQ 81 Query: 75 GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134 +G+ PPN ++I +AL +T VM P + + P N+QIT A+ A P Sbjct: 82 ALGLQQTPPNRILIGIALSLTMLVMRPIWINIYDHAVVPFENDQITLPDALSTAASPLKR 141 Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194 FM T +K ++ M +A++ D + I++P++++SEL+ +F+IGF+I +P Sbjct: 142 FMLAQTNKKAIAQIMTIANAKGNAADQ------DLSIVVPAYVLSELKTAFQIGFMIYIP 195 Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 FL+ID+IVA+++MAMGMMML P +SLPFK++ FVLIDGW+L V L S Sbjct: 196 FLVIDLIVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWALTVGTLTSS 245 >gi|86157788|ref|YP_464573.1| flagellar biosynthesis protein FliP [Anaeromyxobacter dehalogenans 2CP-C] gi|85774299|gb|ABC81136.1| flagellar biosynthetic protein FliP [Anaeromyxobacter dehalogenans 2CP-C] Length = 236 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 92/240 (38%), Positives = 140/240 (58%), Gaps = 5/240 (2%) Query: 6 FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65 AL L L A + + I + S V+ F + T LS A LL+ VT F R Sbjct: 1 MSALGLPLAALTVASPAAEGALQISVNGGGSA-PVKLFLVLTALSFATALLVSVTSFTRI 59 Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 +IV S LR +G VPPN V++ LAL ++ +VMSPT R + P ++++I + A+ Sbjct: 60 VIVLSFLRQALGTPQVPPNQVLVGLALVLSCFVMSPTATRVYADALGPYLDDRIGQAEAL 119 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185 +R + P FM TR++DL+LF +++ + D I I +P+FMISEL +F Sbjct: 120 ERASGPVREFMLRQTRDQDLALFYEISATPRPAA----GDAIPMSIAVPAFMISELTTAF 175 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +G + +P L++D++V+ I+M+MGMMM+PPT I+LP K+ FV+ DGW L+V L +SF Sbjct: 176 RMGLFLYVPLLLVDLLVSAILMSMGMMMVPPTLIALPVKIGLFVMADGWRLVVGALARSF 235 >gi|284989540|ref|YP_003408094.1| flagellar biosynthetic protein FliP [Geodermatophilus obscurus DSM 43160] gi|284062785|gb|ADB73723.1| flagellar biosynthetic protein FliP [Geodermatophilus obscurus DSM 43160] Length = 277 Score = 188 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 81/221 (36%), Positives = 132/221 (59%), Gaps = 4/221 (1%) Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84 D ++I + + T+LS+AP +L++ T F + I+V S+ R +GM PPN Sbjct: 60 DGVDISIGGGSPSTSITLILAVTVLSVAPAVLLLATSFTKIIVVLSLTRNALGMQMSPPN 119 Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144 V+ +ALF+T +VM P E +QP +N +T T A P F+ +NTRE + Sbjct: 120 TVLTGIALFLTLFVMGPVFSEMNETAVQPYLNGAMTMTQAYDVGVVPLREFLLDNTREDE 179 Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204 LSL + ++ T + L+P+F++SEL+ +F IG ++ +PFL++DM+V+ Sbjct: 180 LSLMVGLSGEEAP----TDAAAVSMTTLVPAFVLSELKSAFIIGLVVFIPFLVLDMLVSA 235 Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +M+MGMMM+PP +SLPFK++ FV++DGW+L+ LV S+ Sbjct: 236 ALMSMGMMMVPPVIVSLPFKLLLFVVVDGWALITTALVGSY 276 >gi|149908778|ref|ZP_01897438.1| putative flagellar assembly protein [Moritella sp. PE36] gi|149808052|gb|EDM67993.1| putative flagellar assembly protein [Moritella sp. PE36] Length = 246 Score = 188 bits (477), Expect = 8e-46, Method: Composition-based stats. Identities = 82/243 (33%), Positives = 140/243 (57%), Gaps = 6/243 (2%) Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIA--PILLIMVTCF 62 + A+FL L + + ++ + ++ + + +++ P +L+M+T F Sbjct: 6 IYLAVFLAFISLAAPAHADLALFSVNNGGQPQEYSIKLQLLLLMTALSLLPAMLLMLTSF 65 Query: 63 PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122 R ++V +ILR +G+ PPN V++ +AL +T +M P + E P + +T Sbjct: 66 TRIVVVLAILRQAIGLQQSPPNRVLVGIALTLTILIMRPVWTQIHEDAFLPYDSGSMTLI 125 Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182 A+ + P FM TRE DL + + + +T D I + +L+P+F++SEL+ Sbjct: 126 EALGKAEIPLRTFMLKQTRETDLEQMLKIGNEP----PVTSVDDIPFVVLMPAFVLSELK 181 Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242 +F+IGF++ LPFL+ID++VA+++MAMGMMML P ISLPFK++ FVL+DGW++ V L Sbjct: 182 TAFQIGFMLFLPFLVIDLVVASVLMAMGMMMLSPLIISLPFKLMIFVLVDGWAMTVGTLT 241 Query: 243 KSF 245 SF Sbjct: 242 ASF 244 >gi|254474923|ref|ZP_05088309.1| flagellar biosynthetic protein FliP [Ruegeria sp. R11] gi|214029166|gb|EEB70001.1| flagellar biosynthetic protein FliP [Ruegeria sp. R11] Length = 247 Score = 187 bits (476), Expect = 8e-46, Method: Composition-based stats. Identities = 95/232 (40%), Positives = 142/232 (61%), Gaps = 6/232 (2%) Query: 14 PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73 P A+ +++ S+S ++ + T+LS+AP LLIMVTCFP + V SILR Sbjct: 20 PGFAAAQDL---SLSLGDGQSLSARSIQLILLITVLSLAPGLLIMVTCFPFLVTVLSILR 76 Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133 +G+ PPN+++ISLALF+T++VM P + + + GI PL+ QI T ++R PF Sbjct: 77 QAIGLQQAPPNMMMISLALFLTYFVMEPVFNEAWQTGINPLIEEQIDVETGMERALVPFR 136 Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193 FM D F +A I L+ SF++SE+ R+F++GFL+ L Sbjct: 137 EFMAARL---DPDTFYAIADLRPGTAGIDPTPDAPLSTLVSSFLLSEIARAFQVGFLVFL 193 Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 PFL+ID++VA ++M+MGMMM+PP +SLPFK+ FFV+ DGWSL+ LV+S+ Sbjct: 194 PFLVIDLVVAAVLMSMGMMMVPPAVVSLPFKLAFFVVADGWSLIASALVRSY 245 >gi|257095348|ref|YP_003168989.1| flagellar biosynthesis protein FliP [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047872|gb|ACV37060.1| flagellar biosynthetic protein FliP [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 250 Score = 187 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 100/233 (42%), Positives = 147/233 (63%), Gaps = 7/233 (3%) Query: 16 LVFAKSS-LHDVMNIPADLSISTW--IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72 +A++ L V + P T+ ++T T L+ P L+M+T F R IIV S+L Sbjct: 20 AAWAQAGGLPMVTSTPGVGGSQTYTLSIQTLLTLTALTFIPAALLMMTSFTRIIIVLSLL 79 Query: 73 RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132 R +G + PPN V++ L+LF+TF++MSP LD PL N+IT AI+R A P Sbjct: 80 RHALGTQTSPPNQVLLGLSLFLTFFIMSPVLDTVYTEAYLPLSENRITYLQAIERGAVPL 139 Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192 FM TRE D++LF M ++ D I R+LIP+F+ SEL+ +F+IGF+I Sbjct: 140 RKFMLKQTREADIALFARMTNAPR----FQSTDDIPMRLLIPAFVTSELKTAFQIGFIIF 195 Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PFLI+DM+VA+++M+MGMMM+ P ++LPFK++ FVL+DGW LL+ +LV SF Sbjct: 196 IPFLIVDMVVASVLMSMGMMMMSPVMVALPFKLMLFVLVDGWHLLLGSLVASF 248 >gi|145297437|ref|YP_001140278.1| flagellar biosynthesis protein FliP [Aeromonas salmonicida subsp. salmonicida A449] gi|142850209|gb|ABO88530.1| lateral flagellar assembly protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 244 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 85/227 (37%), Positives = 131/227 (57%), Gaps = 4/227 (1%) Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 A +L V+ ++ T+L + P LL+M+T F R IIV +ILR MG+ Sbjct: 18 ADMTLFSVLPGAEGGEDYNIKLQILFFMTLLGLLPTLLLMMTSFTRIIIVLAILRQAMGL 77 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 PPN V+I ++L +T ++ P + P N+I+ + I R +P FM Sbjct: 78 QQSPPNRVLIGISLILTIVIIRPVWTDMYQHAFIPYDQNEISLSEGIARAEKPLRHFMLA 137 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 TRE DL + ++ D + + +L+P+F++SEL +F+IGF++ +PFL+I Sbjct: 138 QTREPDLEQMLRISGEP----TSLTKDEVPFGVLLPAFVLSELNTAFQIGFMLFIPFLVI 193 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 D++VA+++MAMGMMML P ISLPFK++ FVL+DGWS+ V L SF Sbjct: 194 DLVVASVLMAMGMMMLSPLIISLPFKLMVFVLVDGWSMTVGTLAASF 240 >gi|116626498|ref|YP_828654.1| flagellar biosynthesis protein FliP [Candidatus Solibacter usitatus Ellin6076] gi|116229660|gb|ABJ88369.1| flagellar biosynthetic protein FliP [Candidatus Solibacter usitatus Ellin6076] Length = 245 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 74/219 (33%), Positives = 137/219 (62%), Gaps = 4/219 (1%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86 ++ + + ++ + T++++ P ++ +T F R ++V LR +G S P N V Sbjct: 30 ISAGKNGVSLSVPMQIVILLTLMTLLPAAVMSITPFLRIVVVLHFLRQALGTQSTPSNQV 89 Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 +I LALF+ VM P + G +P+ Q++ A+++ + P F+ REKD+ Sbjct: 90 LIGLALFLALLVMQPVIADMYHQGWEPMEAGQLSPERALEQGSVPLHNFLAKFAREKDIH 149 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 LF++++H+ T +E ++LIP++++SEL+ F+IG ++ LPFLIID+++A++ Sbjct: 150 LFVEISHAPAPRTPA----DLEMKVLIPAYILSELKTGFQIGAVLFLPFLIIDLVIASVT 205 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +++GM+ LPP IS PFK++ FVL+DGW+L+V +L++SF Sbjct: 206 LSIGMVQLPPVMISAPFKILLFVLVDGWNLVVGSLMRSF 244 >gi|307721191|ref|YP_003892331.1| flagellar biosynthetic protein FliP [Sulfurimonas autotrophica DSM 16294] gi|306979284|gb|ADN09319.1| flagellar biosynthetic protein FliP [Sulfurimonas autotrophica DSM 16294] Length = 245 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 93/223 (41%), Positives = 144/223 (64%), Gaps = 4/223 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 +++ ++ P + + T+L +AP +++++T F RF+IVF LR +G V Sbjct: 25 TMNLSLSAPDTPQQLVSSLNVLVVLTLLFLAPAMVLVMTTFTRFVIVFGFLRQALGTQQV 84 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PP +++ LA+ +TF+VM P ++ GI+P + +I A + PF FM NTR Sbjct: 85 PPTQLLVMLAMILTFFVMEPIGTKAYNQGIKPYVAKEIGYEEAFTKTTLPFKNFMIRNTR 144 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 EKDL+LF+ + + + + I+IP+F+ISE++ +FEIGFL+ LPFL+IDM+ Sbjct: 145 EKDLALFLRIRKMQNPKSVA----DVPLSIVIPAFIISEMKTAFEIGFLLFLPFLVIDMV 200 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 VA+I+M+MGMMMLPP ISLPFK++ FVLIDGW+LL+ NL+ S Sbjct: 201 VASILMSMGMMMLPPVMISLPFKILVFVLIDGWNLLIGNLIFS 243 >gi|94968670|ref|YP_590718.1| flagellar biosynthesis protein FliP [Candidatus Koribacter versatilis Ellin345] gi|94550720|gb|ABF40644.1| flagellar biosynthetic protein FliP [Candidatus Koribacter versatilis Ellin345] Length = 244 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 84/241 (34%), Positives = 143/241 (59%), Gaps = 10/241 (4%) Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64 CF L + P L +N+PA + +T + T +++ P +L+ +T F R Sbjct: 13 CFGMLSISRPAL-----GADHGVNLPAIGNNATPWT-IVVLLTAVTLLPAVLLCMTPFVR 66 Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124 ++VF LR +G + P N ++ L L +T ++M P + + + P+ +I+ T A Sbjct: 67 LLVVFHFLRQALGTQTAPTNQTLVGLTLILTLFLMQPVITHIQQDALTPMQQGKISVTEA 126 Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184 I R AEP FM +REKDL+LF+++A T + + +R++ P++++SEL+ Sbjct: 127 ISRGAEPVRQFMLRFSREKDLALFVELAKLPPPKT----SQDLPFRVVAPAYILSELKAG 182 Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 F+IG ++ LPFL+ID+++A I ++GMM LPP IS P K++ FV++DGW+LL+ +L+KS Sbjct: 183 FQIGAVLFLPFLVIDLVIAAITTSVGMMQLPPVVISTPVKILLFVMVDGWNLLIASLMKS 242 Query: 245 F 245 F Sbjct: 243 F 243 >gi|225569962|ref|ZP_03778987.1| hypothetical protein CLOHYLEM_06057 [Clostridium hylemonae DSM 15053] gi|225161432|gb|EEG74051.1| hypothetical protein CLOHYLEM_06057 [Clostridium hylemonae DSM 15053] Length = 220 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 78/212 (36%), Positives = 129/212 (60%), Gaps = 4/212 (1%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 + + T++ + P +++M+T F R II+ S R +G+ PPN+V++ +ALF Sbjct: 11 GGQVPTLEILVMMTVVMLLPSIVVMMTSFVRIIIILSFTRNAIGVQQTPPNMVLVGIALF 70 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 +T ++M P + +P N +I + A+ R P FM T L+L++DMA Sbjct: 71 LTLFIMDPVIKDINTEAYEPYKNGEIAQEEALDRATVPMKKFMLKQTEVSTLNLYVDMAG 130 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 + T + + R++IPSFM SEL+R F G L+ +PFL+ID+IV++ +M+MGM+M Sbjct: 131 IEEK----TAPEDLPMRVVIPSFMTSELKRGFMAGLLLFIPFLLIDIIVSSTLMSMGMIM 186 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LPP +I+LPFK++ FV ++GW LL ++V+SF Sbjct: 187 LPPATIALPFKLLLFVTLNGWELLFSSIVQSF 218 >gi|149191147|ref|ZP_01869405.1| flagellar biosynthesis protein P [Vibrio shilonii AK1] gi|148834985|gb|EDL51964.1| flagellar biosynthesis protein P [Vibrio shilonii AK1] Length = 245 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 80/245 (32%), Positives = 134/245 (54%), Gaps = 4/245 (1%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 M + A+ ++ + + ++ + T+LS P +IM T Sbjct: 1 MPIRILLMVLTFWFSPTQAEGLTILSETNTSEGTEYSVKLQILILMTMLSFVPAFVIMCT 60 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R IIV +ILR +G+ PPN V+I +AL T +M P + + P + IT Sbjct: 61 SFTRIIIVLAILRQALGLQQTPPNQVLIGIALIFTLLIMRPVWTKIYDTAYVPYSTDDIT 120 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A+ +P +M + T+ K L +A + ++ I + IL+P++++SE Sbjct: 121 LMEALASAEKPLRRYMLDQTQRKALEQVTKIAGEK----TLASDEKIPFLILLPAYLLSE 176 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +F+IGF++ LPFL+ID++VA+++M+MGMMML P +SLPFK++ FV++DGW LL+ + Sbjct: 177 LKVAFQIGFMLFLPFLVIDLVVASVLMSMGMMMLSPLIVSLPFKLLVFVIVDGWGLLMGS 236 Query: 241 LVKSF 245 L SF Sbjct: 237 LANSF 241 >gi|78777215|ref|YP_393530.1| flagellar biosynthesis protein FliP [Sulfurimonas denitrificans DSM 1251] gi|78497755|gb|ABB44295.1| Flagellar transport protein FliP [Sulfurimonas denitrificans DSM 1251] Length = 246 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 101/248 (40%), Positives = 151/248 (60%), Gaps = 8/248 (3%) Query: 1 MIRYCFFALFLVTPELVFAKS----SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILL 56 M R L L L A S +++ ++ P + + T+L +AP ++ Sbjct: 1 MFRIFLSILMLSAISLFGADSVAIPTMNFELSAPKTPEQLVSSLNVLVLLTLLFLAPSMV 60 Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116 +++T F RF+IVF LR +G VPP +++ L + +TF+VM P ++ E GI+P + Sbjct: 61 LVMTTFTRFVIVFGFLRQALGTQQVPPTQLLVMLGMILTFFVMEPVGIKAYEDGIKPYIE 120 Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176 +I A + A PF FM NTREKDL+LF + + T + I+IP+F Sbjct: 121 EKIGYEEAFDKTALPFKNFMIRNTREKDLALFFRIRKMQNPTTIA----EVPLSIIIPAF 176 Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236 +ISEL+ +FEIGFL+ LPFL+IDM+VA+I+M+MGMMMLPP I+LPFK++ F+LIDGW+L Sbjct: 177 VISELKTAFEIGFLLFLPFLVIDMVVASILMSMGMMMLPPVMIALPFKILIFILIDGWNL 236 Query: 237 LVENLVKS 244 L+ NL+ S Sbjct: 237 LIGNLIAS 244 >gi|261855324|ref|YP_003262607.1| flagellar biosynthesis protein FliP [Halothiobacillus neapolitanus c2] gi|261835793|gb|ACX95560.1| flagellar biosynthetic protein FliP [Halothiobacillus neapolitanus c2] Length = 274 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 91/234 (38%), Positives = 148/234 (63%), Gaps = 4/234 (1%) Query: 12 VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71 + + A + + + ++ + T+L++ P LL+++T F R IIV S+ Sbjct: 37 AVTQAMAAPGLPAVTLTTDGAQTQYSLTLQILALMTVLTLLPSLLLLMTSFTRIIIVLSL 96 Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131 +R +G+ P N ++I LALF+T ++M+P +S + GI+P M+ +IT AI++ AEP Sbjct: 97 MRQALGLTQTPSNQILIGLALFLTLFIMAPVFQKSYDEGIKPYMDQKITANVAIEKAAEP 156 Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191 FM N TR+ D++LF ++ H T + Y +L+ +F+ SEL+ +FEIGFLI Sbjct: 157 LRTFMLNQTRQSDIALFQNIGHYPAFETPK----DVPYTVLMAAFITSELKTAFEIGFLI 212 Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PFLIID++VA+++M+MGMMML P +SLPFK++ FVL+DGW+L++ L SF Sbjct: 213 FIPFLIIDLVVASVLMSMGMMMLSPMIVSLPFKLMLFVLVDGWTLIMGTLASSF 266 >gi|89094445|ref|ZP_01167385.1| flagellar biosynthetic protein FliP [Oceanospirillum sp. MED92] gi|89081337|gb|EAR60569.1| flagellar biosynthetic protein FliP [Oceanospirillum sp. MED92] Length = 250 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 90/232 (38%), Positives = 145/232 (62%), Gaps = 5/232 (2%) Query: 15 ELVFAKSSLHDVMNIPADLSIS-TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73 L +N D S + + ++ + T+L+ P +L+M+T F R IIVF+ILR Sbjct: 21 GLAADVGIPAVTLNTAEDGSTNYSVTLQVLILMTMLTFLPAMLMMMTSFARIIIVFAILR 80 Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133 +G+ P N +++ +A+F+T ++M+P LD+ QP MN ++ A+Q + PF Sbjct: 81 QALGLQQTPSNQIMVGMAMFLTLFIMTPVLDQIYIQAAQPYMNEEMNVLEALQAASIPFR 140 Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193 FM RE DL LFM ++ + + + I + +L+P+F+ SEL+ +F+IGF++ + Sbjct: 141 EFMMLQVRESDLELFMRISGTP----AVETPEQIPFTVLVPAFVTSELKTAFQIGFMLFI 196 Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 PFLIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW+L++ L SF Sbjct: 197 PFLIIDLVVASVLMAMGMMMLSPVIISLPFKIMLFVLVDGWALVIGTLAASF 248 >gi|68164510|gb|AAY87239.1| predicted flagellar biosynthesis protein [uncultured bacterium BAC17H8] Length = 256 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 87/232 (37%), Positives = 141/232 (60%), Gaps = 4/232 (1%) Query: 14 PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73 P +N +D S + ++ + T L++ P L++ +T F R IIV SILR Sbjct: 26 PAAAQVAGIPALSINEGSDGSTYSLSLQILALMTALTLLPSLVLGMTSFTRIIIVLSILR 85 Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133 MG PPN V++++ALF+TF++M+PTL I P ++ Q+ TA+ E Sbjct: 86 QAMGTQQTPPNQVLVAIALFLTFFIMAPTLTTLNSDVISPYLDGQLPAETALANGTEVMK 145 Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193 F+ NTR DL +F +M + + + +L+P+F+ SEL+ +F+IGFL+ L Sbjct: 146 RFLVQNTRVNDLVMFTEMIG----DQPYASAEDVPLSVLLPAFITSELKTAFQIGFLLFL 201 Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 PFL+IDM++A+I+M++GMMML P ++LPFK++ FVL+DGW++ V +LV ++ Sbjct: 202 PFLVIDMVIASILMSLGMMMLSPMLVALPFKLLLFVLVDGWAMTVGSLVATY 253 >gi|74101640|gb|AAZ99730.1| FliPL [Aeromonas hydrophila] Length = 244 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 86/227 (37%), Positives = 131/227 (57%), Gaps = 4/227 (1%) Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 A +L V+ ++ T+L + P LL+M+T F R IIV +ILR MG+ Sbjct: 18 ADMTLFSVLPGAEGGEDYNIKLQILFFMTLLGLLPTLLLMMTSFTRIIIVLAILRQAMGL 77 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 PPN V+I ++L +T +M P + P N+I+ + I R +P FM Sbjct: 78 QQSPPNRVLIGISLILTIVIMRPVWTDMYQHAFIPYDQNEISLSEGIARAEKPLRHFMLA 137 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 TRE DL + ++ D + + +L+P+F++SEL +F+IGF++ +PFL+I Sbjct: 138 QTREPDLEQMLRISGEPI----SLTKDEVPFGVLLPAFVLSELNTAFQIGFMLFIPFLVI 193 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 D++VA+++MAMGMMML P ISLPFK++ FVL+DGWS+ V L SF Sbjct: 194 DLVVASVLMAMGMMMLSPLIISLPFKLMVFVLVDGWSMTVGTLAASF 240 >gi|183221911|ref|YP_001839907.1| flagellar biosynthesis protein FliP [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911980|ref|YP_001963535.1| flagellar biosynthesis protein FliP [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776656|gb|ABZ94957.1| Endoflagellar biosynthesis pathway protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780333|gb|ABZ98631.1| Flagellar biosynthetic protein FliP; putative membrane protein; putative signal peptide [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 269 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 144/226 (63%), Gaps = 7/226 (3%) Query: 23 LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82 L +N ++ + + TILS+AP +++ VT F + +IVF +R + + ++P Sbjct: 47 LSFNVNEARGPKETSLSLMILFLVTILSLAPAIVMSVTSFTKVVIVFDFVRRALSLQNLP 106 Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142 PN V++ LALF+TF++M+PT+ + + +QP +N +I ++ ++ + FM + Sbjct: 107 PNQVMMGLALFVTFFIMAPTIGKVNDEALQPYLNGKIDQSAFMEGSMKHLRQFMIRQLGK 166 Query: 143 ---KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199 KD++LF+ + + ++ + + +L+P+FM+SE++++F IG I +PF++ID Sbjct: 167 DGTKDVALFLKI----GKVQNVKSFEDVPSYVLVPAFMLSEIKKAFIIGIYIFIPFIVID 222 Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +IVA+ ++AMG MMLPP ISLP K+I F+LIDGW+LLV LV+S+ Sbjct: 223 LIVASALLAMGFMMLPPVMISLPLKLILFILIDGWNLLVLELVRSY 268 >gi|268316332|ref|YP_003290051.1| flagellar biosynthetic protein FliP [Rhodothermus marinus DSM 4252] gi|262333866|gb|ACY47663.1| flagellar biosynthetic protein FliP [Rhodothermus marinus DSM 4252] Length = 269 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 91/195 (46%), Positives = 140/195 (71%), Gaps = 4/195 (2%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP ++I+ T F R +++FSILRT +G+ PP V+I LALF+T ++M P D+ + + Sbjct: 77 APAIIILTTSFTRLVVIFSILRTALGLQQSPPTQVLIGLALFLTLFIMYPVFDQIHDEAL 136 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 +P ++ +IT+ A++R A P FM TREKDL LFMD+A+ + + + + I Sbjct: 137 RPYLDGEITQQVALERAAAPLRAFMLRQTREKDLMLFMDLANV----EAFDRPEDVPFYI 192 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 L+P+F+ISELR +F+IGF+I LPFL++D+IVA+++M+MGMMMLPP ISLP K++ FVL Sbjct: 193 LVPAFVISELRIAFQIGFMIFLPFLLVDLIVASVLMSMGMMMLPPVMISLPLKLLLFVLA 252 Query: 232 DGWSLLVENLVKSFI 246 DGW L+VE++V+ ++ Sbjct: 253 DGWYLVVESVVRGYL 267 >gi|323975949|gb|EGB71043.1| FliP family protein [Escherichia coli TW10509] Length = 250 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 83/214 (38%), Positives = 132/214 (61%), Gaps = 6/214 (2%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 + + ++ + T++ + P +++M+TCF RFIIV S+LR +G+ PPN ++I + Sbjct: 36 GNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGI 95 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 AL +T VM P + + P N+QIT T A+ A P FM T +K ++ M Sbjct: 96 ALSLTLLVMRPVWLNIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMT 155 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 + + D + I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMG Sbjct: 156 IGGAKGNAADQ------DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMG 209 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 MMML P +SLPFK++ FVLIDGWSL + L S Sbjct: 210 MMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243 >gi|303240272|ref|ZP_07326791.1| flagellar biosynthetic protein FliP [Acetivibrio cellulolyticus CD2] gi|302592182|gb|EFL61911.1| flagellar biosynthetic protein FliP [Acetivibrio cellulolyticus CD2] Length = 269 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 82/195 (42%), Positives = 131/195 (67%), Gaps = 1/195 (0%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +L+M+T F R IIV S LR +G +PPN V+I LALF+T ++M+P + E Sbjct: 75 APSILMMMTSFTRVIIVLSFLRNALGTQQMPPNQVLIGLALFLTLFIMNPVITEINETAY 134 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 +P N +IT+ A++R ++ FM T +KDL+LF+ ++ + + ++ Sbjct: 135 KPYSNKEITQQVALERSSKTIKTFMLKQTEKKDLALFVSLSGTKTPIKEQEVP-NLPLTT 193 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 +IP+F+ISEL +F++GFLI LPFL+ID++V++ +M+MGMMML P ISLPFK++ F+++ Sbjct: 194 IIPAFLISELTTAFKMGFLIYLPFLVIDLVVSSTLMSMGMMMLSPVMISLPFKILLFIMV 253 Query: 232 DGWSLLVENLVKSFI 246 GW+LL + +V SF+ Sbjct: 254 GGWNLLSQMIVNSFV 268 >gi|254444823|ref|ZP_05058299.1| flagellar biosynthetic protein FliP [Verrucomicrobiae bacterium DG1235] gi|198259131|gb|EDY83439.1| flagellar biosynthetic protein FliP [Verrucomicrobiae bacterium DG1235] Length = 257 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 88/253 (34%), Positives = 149/253 (58%), Gaps = 16/253 (6%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPA-----------DLSISTWIVRTFGIFTILSIA 52 + A+ L A+++ D P ++ + T+L++ Sbjct: 8 FWILAIALFCVSAASAQTAAPDPAGSPGLQLSVNMGGEDGQQDVGAAIQVLLLMTLLTLG 67 Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +++++T F R IIV +RT +G+ P N +I+ L+L +TF++M P L + +Q Sbjct: 68 PSIVVLMTSFTRIIIVLGFVRTAIGVHQAPSNQIIVGLSLIITFFIMQPVLSNVNDNALQ 127 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 PLM +IT A + + P FM N TR +D+ F+D++ N T + R++ Sbjct: 128 PLMAKEITTAQAFEAGSGPLREFMLNQTRLQDIEFFLDLS-----NYGPTTASELPMRVV 182 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 +P+F++SE+R +F++GFLI LPF+++D +V T +MAMGMMM+PP ISLPFK++ FVL+D Sbjct: 183 VPAFVMSEIRTAFKMGFLIFLPFIMVDFLVGTTLMAMGMMMMPPVVISLPFKLLLFVLVD 242 Query: 233 GWSLLVENLVKSF 245 GW+L++++LV+SF Sbjct: 243 GWTLVIKSLVQSF 255 >gi|120597289|ref|YP_961863.1| flagellar biosynthesis protein FliP [Shewanella sp. W3-18-1] gi|146294566|ref|YP_001184990.1| flagellar biosynthesis protein FliP [Shewanella putrefaciens CN-32] gi|120557382|gb|ABM23309.1| flagellar biosynthetic protein FliP [Shewanella sp. W3-18-1] gi|145566256|gb|ABP77191.1| flagellar biosynthetic protein FliP [Shewanella putrefaciens CN-32] Length = 244 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 87/245 (35%), Positives = 141/245 (57%), Gaps = 3/245 (1%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 ++R + FL P + ++ ++ + + T +S P++L+M+T Sbjct: 2 IVRLLLLSTFLFVPHAIASEGLTLFTLDSGESSQAVNIKLEILALMTAISFLPVMLMMLT 61 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R IIV +ILR +G+ PPN V++ +AL +T ++M P D+ + P +I Sbjct: 62 SFTRIIIVLAILRQALGLQQSPPNRVLVGIALILTIFIMRPVGDKIYKEAYLPYDQGKIE 121 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 AI P FM TRE DL + +A+ T + + + + +L+P+F++SE Sbjct: 122 LMEAISIAKVPLTRFMLAQTRETDLEQMLKIANEP---THMKTAEEVPFFVLMPAFVLSE 178 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +F+IGFLI LPFL+ID++VA+++M+MGMMML P ISLPFK++ FVL+DGW++ V Sbjct: 179 LKTAFQIGFLIFLPFLVIDLVVASVLMSMGMMMLSPLIISLPFKLMIFVLVDGWAMTVST 238 Query: 241 LVKSF 245 L SF Sbjct: 239 LTASF 243 >gi|149203108|ref|ZP_01880079.1| flagellar biosynthetic protein FliP [Roseovarius sp. TM1035] gi|149143654|gb|EDM31690.1| flagellar biosynthetic protein FliP [Roseovarius sp. TM1035] Length = 245 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 102/236 (43%), Positives = 151/236 (63%), Gaps = 3/236 (1%) Query: 11 LVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70 L L + +++ D S+S ++ + T+LS+AP + IMVTCFP + V S Sbjct: 13 LFLGALATGAPAQDLTLSLGDDASLSARTLQLIALITVLSLAPGIAIMVTCFPFVVTVLS 72 Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130 ILR G+G+ PPN++I+SLALF+TF+VM P ++ E GI+PL+ +++ AI+R Sbjct: 73 ILRQGIGLQQSPPNMLIVSLALFLTFFVMEPVFTQAWETGIEPLLQERLSPDLAIERTLA 132 Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190 PF VFM D +A T ++ ILIPSFM+SE+ R+F+IGFL Sbjct: 133 PFRVFMLGRV---DPDTLATIAALRPETTTLSAGPDAPLSILIPSFMLSEIARAFQIGFL 189 Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 + LPFLIID++VA I+M+MGMMM+PP +SLPFK+ FFV+ DGW+L+ E+LV+ ++ Sbjct: 190 VFLPFLIIDLVVAAILMSMGMMMVPPAIVSLPFKLAFFVIADGWTLIAESLVRGYL 245 >gi|197122898|ref|YP_002134849.1| flagellar biosynthesis protein FliP [Anaeromyxobacter sp. K] gi|196172747|gb|ACG73720.1| flagellar biosynthetic protein FliP [Anaeromyxobacter sp. K] Length = 236 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 90/229 (39%), Positives = 137/229 (59%), Gaps = 5/229 (2%) Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 A + + I + S V+ F + T LS A LL+ VT F R +IV S LR + Sbjct: 12 SVASPAAEGALQISVNGGGSA-PVKLFLVLTALSFATALLVSVTSFTRIVIVLSFLRQAL 70 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G VPPN V+I LAL ++F+VMSPT R + P ++++I + A++R + P FM Sbjct: 71 GTPQVPPNQVLIGLALVLSFFVMSPTATRVYADALGPYLDDRIGQAEALERASGPVREFM 130 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 TR++DL+LF +++ + D I I +P+FMISEL +F +G + +P L Sbjct: 131 LRQTRDQDLALFYEISATPRP----ASGDAIPMSIAVPAFMISELTTAFRMGLFLYVPLL 186 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++D++V+ I+M+MGMMM+PPT I+LP K+ FV+ DGW L+V L +SF Sbjct: 187 LVDLLVSAILMSMGMMMVPPTLIALPVKIGLFVMADGWRLVVGALARSF 235 >gi|126738561|ref|ZP_01754266.1| flagellar biosynthetic protein FliP [Roseobacter sp. SK209-2-6] gi|126720360|gb|EBA17066.1| flagellar biosynthetic protein FliP [Roseobacter sp. SK209-2-6] Length = 247 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 98/227 (43%), Positives = 144/227 (63%), Gaps = 3/227 (1%) Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 A + +++ SIS ++ + T+LS+AP +LIM+TCFP + V SILR G+G+ Sbjct: 22 AALAQELSLSLADGQSISARSIQLILLITVLSLAPGMLIMITCFPFLVTVLSILRQGLGL 81 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 PPN+++ISLALF+T++VM P + + GI PL+ QI T + R EPF FM N Sbjct: 82 QQAPPNMLMISLALFLTYFVMEPVFTEAWQTGISPLIEEQIDVETGLIRSLEPFRGFMAN 141 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 D F +A I +L+PSF++SE+ R+F+IGFL+ LPFL+I Sbjct: 142 RL---DPDTFYAIADLRPATKGIDPTVDAPISVLVPSFLLSEIARAFQIGFLVFLPFLVI 198 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 D++VA ++M+MGMMM+PP +SLPFK+ FFV+ DGWSL+ LV+S+ Sbjct: 199 DLVVAAVLMSMGMMMVPPAVVSLPFKLAFFVVADGWSLIATALVRSY 245 >gi|283784010|ref|YP_003363875.1| lateral flagellar export/assembly protein [Citrobacter rodentium ICC168] gi|282947464|emb|CBG87011.1| lateral flagellar export/assembly protein [Citrobacter rodentium ICC168] Length = 252 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 145/246 (58%), Gaps = 9/246 (3%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 + ALF ++P A+ ++N+ + + ++ + T++ + P L++M Sbjct: 7 LTLALGIALFALSP-FACAQGGEIPLLNVVTHGASQEYSVKIQVLILMTLVGLLPTLVLM 65 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +TCF RFIIV S+LR +G+ PPN ++I +AL +T VM P + + P N+Q Sbjct: 66 MTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALCLTMLVMRPIWLNIYDRAVVPFENDQ 125 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 +T + A+ A P FM T +K ++ M +A D + I++P++++ Sbjct: 126 MTLSDALSTAATPLKRFMLAQTNKKAMAQIMTIADVKGDAADQ------DLTIVVPAYVL 179 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P +SLPFK++ FVLIDGWSL V Sbjct: 180 SELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWSLTV 239 Query: 239 ENLVKS 244 L S Sbjct: 240 GTLTSS 245 >gi|89895724|ref|YP_519211.1| flagellar biosynthesis protein FliP [Desulfitobacterium hafniense Y51] gi|89335172|dbj|BAE84767.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 236 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 105/236 (44%), Positives = 152/236 (64%), Gaps = 6/236 (2%) Query: 10 FLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVF 69 LV + V A D A+ + ST + +LSIAP +L+++T F R IIV Sbjct: 6 ILVNTDAVLAAGLTLDFGTTTAEQTSSTLQILLLLT--VLSIAPAILVLMTSFTRTIIVL 63 Query: 70 SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129 S +R +G +PPN V+I L+LF+TF+VM+PT + +QP M NQIT+ A+Q+ Sbjct: 64 SFVRNALGTQQLPPNQVLIGLSLFLTFFVMAPTWNEINTQALQPYMQNQITQAEALQQAE 123 Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189 P FM TREKDL+LF+ +A T I +LIP+F+ISEL+ +F++GF Sbjct: 124 APLRQFMFEQTREKDLTLFVGLARMEQPQTYG----DIPTYVLIPAFVISELKTAFQMGF 179 Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 I +PF++IDM+VA+++M+MGMMMLPP +SLPFK++ FVL+DGW L+V++LV SF Sbjct: 180 AIFIPFMVIDMLVASVLMSMGMMMLPPMMVSLPFKILLFVLVDGWHLVVQSLVTSF 235 >gi|260432140|ref|ZP_05786111.1| flagellar biosynthetic protein FliP [Silicibacter lacuscaerulensis ITI-1157] gi|260415968|gb|EEX09227.1| flagellar biosynthetic protein FliP [Silicibacter lacuscaerulensis ITI-1157] Length = 243 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 99/245 (40%), Positives = 151/245 (61%), Gaps = 3/245 (1%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 M+R F+ + S+ +++ SIS ++ + T+LS+AP L IM+T Sbjct: 1 MMRNGFWLILAALLLTPALASAQELSLSLGEGGSISARTIQLILLITVLSLAPGLAIMIT 60 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 CFP + V +ILR G+G+ PPN++I+SLALF+T++VM P ++ E GI+P++ + Sbjct: 61 CFPFLVTVLAILRQGIGLQQSPPNMLIVSLALFLTYFVMEPVFTQAWETGIRPMVEETME 120 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A++R PF FM D F MA + + +L+PSFM+SE Sbjct: 121 VEPALERALVPFREFMAARL---DAETFQAMAALRPDGEAMELSPQAPLSVLMPSFMLSE 177 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 + R+F+IGFLI LPFLIID++VA ++M+MGMMM+PP ++SLPFK+ FFV+ DGWSL+ Sbjct: 178 IARAFQIGFLIFLPFLIIDLVVAAVLMSMGMMMVPPATVSLPFKLAFFVIADGWSLIAGA 237 Query: 241 LVKSF 245 LV+S+ Sbjct: 238 LVRSY 242 >gi|299066546|emb|CBJ37736.1| Flagellar biosynthetic protein FliP [Ralstonia solanacearum CMR15] Length = 227 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 94/215 (43%), Positives = 141/215 (65%), Gaps = 4/215 (1%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 + + +R T+L++ P LL+ VT F R IIV S+LR G+GM PPN +I L Sbjct: 16 TPAADTAQALRIVLGLTVLAVLPALLVSVTSFLRIIIVLSMLRHGLGMQETPPNTALIGL 75 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 ALF+T + MSPTL++ QP M I+ A ++ + P FM TRE+DL+L ++ Sbjct: 76 ALFLTLFTMSPTLEQINRQAFQPFMAGTISMEQAYEKGSAPLRDFMVRQTREQDLALMVE 135 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 ++ + D I LIP++M+SELR +F+IGF++ LPFL+ID++V++I+MA+G Sbjct: 136 LSKAKTP----QSMDDISNVQLIPAYMLSELRTAFQIGFVVFLPFLLIDLVVSSILMALG 191 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMM+PP+++SLP KV+ FVL+DGW LL++ LV SF Sbjct: 192 MMMMPPSTVSLPLKVLMFVLMDGWGLLLKALVGSF 226 >gi|327254531|gb|EGE66147.1| flagellar biosynthetic protein FliP [Escherichia coli STEC_7v] Length = 250 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 83/214 (38%), Positives = 132/214 (61%), Gaps = 6/214 (2%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 + + ++ + T++ + P +++M+TCF RFIIV S+LR +G+ PPN ++I + Sbjct: 36 GNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGI 95 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 AL +T VM P + + P N+QIT T A+ A P FM T +K ++ M Sbjct: 96 ALSLTLLVMRPVWLNIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMT 155 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 + + D + I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMG Sbjct: 156 IGGAKGNAADQ------DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMG 209 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 MMML P +SLPFK++ FVLIDGWSL + L S Sbjct: 210 MMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243 >gi|126176172|ref|YP_001052321.1| flagellar biosynthesis protein FliP [Shewanella baltica OS155] gi|125999377|gb|ABN63452.1| flagellar biosynthetic protein FliP [Shewanella baltica OS155] Length = 244 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 86/245 (35%), Positives = 142/245 (57%), Gaps = 3/245 (1%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 ++R ++ L P+ + ++ ++ D + + T +S PI+L+M+T Sbjct: 2 IVRVLLLSILLFAPQALASEGLTLFTLDSAQDSQAVNIKLEILALMTAISFLPIMLMMLT 61 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R IIV +ILR +G+ PPN V++ +AL +T ++M P D+ + P +I Sbjct: 62 SFTRIIIVLAILRQALGLQQSPPNRVLVGIALILTIFIMRPVGDKIYKEAYLPYDQGKIE 121 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A+ P FM TR DL + +A+ T + + + + +L+P+F++SE Sbjct: 122 LMEAVSIAKVPLTRFMLAQTRATDLEQMLKIANEP---THMKTAEEVPFFVLMPAFVLSE 178 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +F+IGFL+ LPFL+ID++VA+++M+MGMMML P ISLPFK++ FVL+DGWS+ V Sbjct: 179 LKTAFQIGFLLFLPFLVIDLVVASVLMSMGMMMLSPLIISLPFKLMVFVLVDGWSMTVST 238 Query: 241 LVKSF 245 L SF Sbjct: 239 LTASF 243 >gi|119947195|ref|YP_944875.1| flagellar biosynthesis protein FliP [Psychromonas ingrahamii 37] gi|119865799|gb|ABM05276.1| flagellar biosynthetic protein FliP [Psychromonas ingrahamii 37] Length = 245 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 86/235 (36%), Positives = 134/235 (57%), Gaps = 7/235 (2%) Query: 13 TPELVFAKSSLH--DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70 +P FA L + + P S ++ + T LS P ++M TCF R IIV + Sbjct: 15 SPFNSFASEGLSVLSITDTPTGQDYSVK-LQILILMTALSFIPAFILMCTCFTRIIIVLA 73 Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130 ILR +G+ PPN V++ +AL ++ +M P + P I+ TA + Sbjct: 74 ILRQALGLQQSPPNQVLLGIALALSILIMKPVWTDVYDNAFVPYDAGDISLLTAASIAEK 133 Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190 P FM T L M++A + K + I + I++P+F+ISEL+ +F+IGF+ Sbjct: 134 PVREFMLRQTHSSSLEQMMNIAG----EDENVKPEDISFAIILPAFVISELKTAFQIGFM 189 Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 + +PFLIID++VA+++M+MGMMML P +SLPFK++ FVL+DGW++LV +L SF Sbjct: 190 LFMPFLIIDLVVASVLMSMGMMMLSPLIVSLPFKLLAFVLVDGWTMLVGSLSTSF 244 >gi|218703506|ref|YP_002411025.1| flagellar biosynthesis protein FliP [Escherichia coli UMN026] gi|293403337|ref|ZP_06647428.1| fliP [Escherichia coli FVEC1412] gi|298378948|ref|ZP_06988829.1| fliP [Escherichia coli FVEC1302] gi|300898060|ref|ZP_07116429.1| flagellar biosynthetic protein FliP [Escherichia coli MS 198-1] gi|59889762|emb|CAH19117.1| Lateral flagellar export/assembly protein (FliP-like) [Escherichia coli] gi|218430603|emb|CAR11469.1| Lateral flagellar export/assembly protein, FliP-like [Escherichia coli UMN026] gi|284920026|emb|CBG33082.1| lateral flagellar export/assembly protein (FliP-like) [Escherichia coli 042] gi|291429190|gb|EFF02210.1| fliP [Escherichia coli FVEC1412] gi|298280061|gb|EFI21565.1| fliP [Escherichia coli FVEC1302] gi|300358238|gb|EFJ74108.1| flagellar biosynthetic protein FliP [Escherichia coli MS 198-1] Length = 250 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 83/214 (38%), Positives = 132/214 (61%), Gaps = 6/214 (2%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 + + ++ + T++ + P +++M+TCF RFIIV S+LR +G+ PPN ++I + Sbjct: 36 GNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGI 95 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 AL +T VM P + + P N+QIT T A+ A P FM T +K ++ M Sbjct: 96 ALSLTMLVMRPVWLNIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMT 155 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 + + D + I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMG Sbjct: 156 IGGAKGNAADQ------DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMG 209 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 MMML P +SLPFK++ FVLIDGWSL + L S Sbjct: 210 MMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243 >gi|5679188|gb|AAD46902.1|AF160974_5 HrcR homolog [Xanthomonas campestris pv. glycines] Length = 201 Score = 185 bits (471), Expect = 4e-45, Method: Composition-based stats. Identities = 65/200 (32%), Positives = 114/200 (57%), Gaps = 2/200 (1%) Query: 48 ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107 +L + P ++VT + + ++V +LR +G+ VPPN+V+ +AL ++ +VM+P + Sbjct: 1 MLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF 60 Query: 108 EMGIQPLMNNQITETTA--IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165 + Q + EPF F+ +TRE++ + FM A Sbjct: 61 KAAAQNYGAGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLK 120 Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225 + +L P+F +SEL +F IGFL+ L F++ID++VA +MAMG+ + PT++++PFK+ Sbjct: 121 SDDLLVLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKL 180 Query: 226 IFFVLIDGWSLLVENLVKSF 245 + FV +DGWS+L+ LV S+ Sbjct: 181 LLFVAMDGWSMLIHGLVLSY 200 >gi|167626138|ref|YP_001676432.1| flagellar biosynthesis protein FliP [Shewanella halifaxensis HAW-EB4] gi|167356160|gb|ABZ78773.1| flagellar biosynthetic protein FliP [Shewanella halifaxensis HAW-EB4] Length = 242 Score = 185 bits (471), Expect = 4e-45, Method: Composition-based stats. Identities = 89/245 (36%), Positives = 133/245 (54%), Gaps = 4/245 (1%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 M R + + + + + + + T+LS P LL+M+T Sbjct: 1 MWRVLLVFVLSFSSAAYASDGLTLFSLADGDKTQAVSVKLEILALMTVLSFLPALLMMLT 60 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R I+V +ILR +G+ PPN V+I +AL MT ++M P + P QI Sbjct: 61 SFTRIIVVLAILRQALGLQQSPPNKVLIGIALVMTIFIMRPVGQEIYDDAFLPYDMGQIE 120 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A+ R P FM TRE DL + +A D I + +L+P+F++SE Sbjct: 121 LPEAVARGEVPLRQFMLAQTRETDLEQMLKIADEPI----TLTADEIPFFVLMPAFVLSE 176 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +F+IGFL+ LPFL+ID++VA+++M+MGMMML P ISLPFK++ FVL+DGWS+ V Sbjct: 177 LKTAFQIGFLLFLPFLVIDLVVASVLMSMGMMMLSPLIISLPFKLMVFVLVDGWSMTVST 236 Query: 241 LVKSF 245 LV S+ Sbjct: 237 LVASY 241 >gi|294339800|emb|CAZ88163.1| Flagellar biosynthetic protein FliP [Thiomonas sp. 3As] Length = 255 Score = 185 bits (471), Expect = 4e-45, Method: Composition-based stats. Identities = 96/226 (42%), Positives = 149/226 (65%), Gaps = 6/226 (2%) Query: 23 LHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80 L + PA + + V+T T L P +L+M+T F R IIV S+L+ +G + Sbjct: 33 LPAFTSSPAAGGGTEYSLSVQTLLFMTALVFLPAMLLMMTAFTRIIIVLSLLKQALGTTT 92 Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140 VPP+ VI+ L+LF+TF+VMSP L++ ++ I+PLM+NQIT A+Q A P FM T Sbjct: 93 VPPSQVIVGLSLFLTFFVMSPVLNQVNDVAIKPLMDNQITMQQALQMGAAPLRTFMLGQT 152 Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200 R++DL+LF+ ++ + K +L+P+F+ SEL+ +F+IGF+I +PFLIIDM Sbjct: 153 RQEDLALFVKLSGHK----ALDKPADTPMSLLVPAFVTSELKTAFQIGFVIFIPFLIIDM 208 Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +VA ++M+MGMMML P ++S P K++ FVL+ GW L++ +L++SFI Sbjct: 209 VVAAVLMSMGMMMLSPVTVSFPLKLMLFVLVGGWELVIGSLMQSFI 254 >gi|163802009|ref|ZP_02195905.1| translocation protein in type III secretion [Vibrio sp. AND4] gi|159174150|gb|EDP58958.1| translocation protein in type III secretion [Vibrio sp. AND4] Length = 216 Score = 185 bits (471), Expect = 4e-45, Method: Composition-based stats. Identities = 72/208 (34%), Positives = 126/208 (60%), Gaps = 2/208 (0%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + +L++ P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ ++M Sbjct: 8 LNLIVSLALLALIPFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIM 67 Query: 100 SPTLDRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +P + + Q + + T I+ +P+ F++ + RE + + F D A + Sbjct: 68 APVGFETYDYVKQHDISLEDSETIEGLIESGLQPYREFLKKHIRETESAFFTDAAKTLWP 127 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + + + +L+P+F +SEL R+FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ P Sbjct: 128 QKYVDRLESDSLLLLLPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPM 187 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 +ISLPFK++ FVL+DGW+ L LV S+ Sbjct: 188 TISLPFKLLLFVLLDGWTKLTHGLVLSY 215 >gi|170684182|ref|YP_001742352.1| flagellar biosynthesis protein FliP [Escherichia coli SMS-3-5] gi|170521900|gb|ACB20078.1| lateral flagellar export/assembly protein LfiP [Escherichia coli SMS-3-5] Length = 250 Score = 185 bits (471), Expect = 4e-45, Method: Composition-based stats. Identities = 82/214 (38%), Positives = 131/214 (61%), Gaps = 6/214 (2%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 + + ++ + T++ + P +++M+TCF RFIIV S+LR +G+ PPN ++I + Sbjct: 36 GNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGI 95 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 AL +T VM P + + P N+QIT T A+ A P FM T +K ++ M Sbjct: 96 ALSLTMLVMRPVWLNIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMT 155 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 + + + I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMG Sbjct: 156 IGGAKGNAA------DQDLTIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMG 209 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 MMML P +SLPFK++ FVLIDGWSL + L S Sbjct: 210 MMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243 >gi|323191516|gb|EFZ76777.1| flagellar biosynthetic protein FliP [Escherichia coli RN587/1] Length = 250 Score = 185 bits (471), Expect = 4e-45, Method: Composition-based stats. Identities = 83/214 (38%), Positives = 132/214 (61%), Gaps = 6/214 (2%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 + + ++ + T++ + P +++M+TCF RFIIV S+LR +G+ PPN ++I + Sbjct: 36 GNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGI 95 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 AL +T VM P + + P N+QIT T A+ A P FM T +K ++ M Sbjct: 96 ALSLTLLVMRPIWLNIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMT 155 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 + + D + I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMG Sbjct: 156 IGGAKGNAADQ------DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMG 209 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 MMML P +SLPFK++ FVLIDGWSL + L S Sbjct: 210 MMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243 >gi|306813325|ref|ZP_07447518.1| flagellar biosynthesis protein FliP [Escherichia coli NC101] gi|305854088|gb|EFM54527.1| flagellar biosynthesis protein FliP [Escherichia coli NC101] Length = 250 Score = 185 bits (471), Expect = 4e-45, Method: Composition-based stats. Identities = 83/214 (38%), Positives = 132/214 (61%), Gaps = 6/214 (2%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 + + ++ + T++ + P +++M+TCF RFIIV S+LR +G+ PPN ++I + Sbjct: 36 GNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGI 95 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 AL +T VM P + + P N+QIT T A+ A P FM T +K ++ M Sbjct: 96 ALSLTLLVMRPIWLNIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMT 155 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 + + D + I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMG Sbjct: 156 IGGAKGNAADQ------DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMG 209 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 MMML P +SLPFK++ FVLIDGWSL + L S Sbjct: 210 MMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243 >gi|157737241|ref|YP_001489924.1| flagellar biosynthesis protein FliP [Arcobacter butzleri RM4018] gi|157699095|gb|ABV67255.1| flagellar biosynthetic protein FliP [Arcobacter butzleri RM4018] Length = 241 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 98/244 (40%), Positives = 144/244 (59%), Gaps = 4/244 (1%) Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61 +R F L ++ + + I +L +AP LL+MVT Sbjct: 1 MRIIFTVLLFSIFANAADAPMINLSVAAIEQPVQFVRTINIAIILALLVLAPTLLLMVTS 60 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F R IIVFS+LR MG+ PP+ +IISL+L +T ++M P ++ + I P M+ +I Sbjct: 61 FTRLIIVFSLLRQAMGLQQTPPSQIIISLSLILTIFIMEPYAKKAWDDAIVPYMDEKIGY 120 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 A + PF FM NTRE DL+LF + + + + +L+P+F++SEL Sbjct: 121 EVAFDKGVAPFKEFMIKNTREADLALFYRIKKEPNPK----NIEAVPLTLLMPAFIVSEL 176 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 R +FEIGFLI LPFL+ID+IVA+I+M++GMMMLPP ISLP K+IFF+++DGW L++ NL Sbjct: 177 RTAFEIGFLIFLPFLVIDIIVASILMSLGMMMLPPVMISLPIKIIFFIVVDGWQLIIGNL 236 Query: 242 VKSF 245 +SF Sbjct: 237 AQSF 240 >gi|256020209|ref|ZP_05434074.1| flagellar biosynthesis protein FliP [Shigella sp. D9] gi|260853448|ref|YP_003227339.1| putative lateral flagellar biosynthesis protein [Escherichia coli O26:H11 str. 11368] gi|260866394|ref|YP_003232796.1| putative lateral flagellar biosynthesis protein [Escherichia coli O111:H- str. 11128] gi|307315216|ref|ZP_07594795.1| flagellar biosynthetic protein FliP [Escherichia coli W] gi|332281371|ref|ZP_08393784.1| lateral flagellar export/assembly protein [Shigella sp. D9] gi|257752097|dbj|BAI23599.1| predicted lateral flagellar biosynthesis protein [Escherichia coli O26:H11 str. 11368] gi|257762750|dbj|BAI34245.1| predicted lateral flagellar biosynthesis protein [Escherichia coli O111:H- str. 11128] gi|306905397|gb|EFN35934.1| flagellar biosynthetic protein FliP [Escherichia coli W] gi|315059469|gb|ADT73796.1| Lateral flagellar export/assembly protein [Escherichia coli W] gi|323158013|gb|EFZ44114.1| flagellar biosynthetic protein FliP [Escherichia coli EPECa14] gi|323178514|gb|EFZ64092.1| flagellar biosynthetic protein FliP [Escherichia coli 1180] gi|323181527|gb|EFZ66947.1| flagellar biosynthetic protein FliP [Escherichia coli 1357] gi|323379973|gb|ADX52241.1| flagellar biosynthetic protein FliP [Escherichia coli KO11] gi|332103723|gb|EGJ07069.1| lateral flagellar export/assembly protein [Shigella sp. D9] Length = 250 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 83/214 (38%), Positives = 132/214 (61%), Gaps = 6/214 (2%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 + + ++ + T++ + P +++M+TCF RFIIV S+LR +G+ PPN ++I + Sbjct: 36 GNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGI 95 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 AL +T VM P + + P N+QIT T A+ A P FM T +K ++ M Sbjct: 96 ALSLTMLVMRPIWLNIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMT 155 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 + + D + I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMG Sbjct: 156 IGGAKGHAADQ------DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMG 209 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 MMML P +SLPFK++ FVLIDGWSL + L S Sbjct: 210 MMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243 >gi|159045807|ref|YP_001534601.1| flagellar biosynthesis protein FliP [Dinoroseobacter shibae DFL 12] gi|157913567|gb|ABV95000.1| flagellar biosynthesis protein FliP [Dinoroseobacter shibae DFL 12] Length = 242 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 97/228 (42%), Positives = 147/228 (64%), Gaps = 1/228 (0%) Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 + + +N+ + S+S + + T+LSIAP L IM+TCFP + V SILR G+G+ Sbjct: 16 SAGAQELAINLGDETSLSARTFQIIALITVLSIAPGLAIMITCFPFMVTVLSILRQGIGL 75 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 PPN++IISLALF+T++VM P + GIQP+++ + + EPF FM+ Sbjct: 76 QQSPPNMLIISLALFLTYFVMDPVFREAWSRGIQPMVDGAVDMEEGFRAALEPFIRFMQA 135 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 T + L+ ++ + + D +LIPSF++SE+ ++F+IGFLI LPFLII Sbjct: 136 RTDPETLARLGNLRMETAGVAPF-ELDAPPISVLIPSFLLSEIEKAFQIGFLIFLPFLII 194 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 D+IVA I+M+MGMMM+PP +SLPFK+ FFV+ DGW+LL E L++S++ Sbjct: 195 DLIVAAILMSMGMMMVPPAIVSLPFKLAFFVVADGWTLLSEALLRSYM 242 >gi|99082784|ref|YP_614938.1| flagellar biosynthesis protein FliP [Ruegeria sp. TM1040] gi|99039064|gb|ABF65676.1| Flagellar biosynthetic protein fliP [Ruegeria sp. TM1040] Length = 248 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 101/236 (42%), Positives = 149/236 (63%), Gaps = 6/236 (2%) Query: 10 FLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVF 69 L P++ A+ +N+ SIS ++ + T+LS+AP LL+M+TCFP I V Sbjct: 16 LLAQPQVALAQEL---SLNLADGQSISARTIQLILLITVLSVAPGLLVMLTCFPFLITVL 72 Query: 70 SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129 SILR +G+ PPN+++ISLA+F+T++VM P + E GI PL++ ++ A++R Sbjct: 73 SILRQAIGLQQAPPNMLMISLAMFLTYFVMEPVFTEAWETGIAPLIDEELEVVPALERAV 132 Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189 EPF VFM N D + +A + +LIPSFM+SE+ R+FEIGF Sbjct: 133 EPFRVFMANRL---DPDTYYAIADLRPGTEGSDPSPESPLSVLIPSFMLSEITRAFEIGF 189 Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 L+ LPFL+ID++ A I+M+MGMMM+PP +SLPFK+ FFV+ DGWSL+ LV+S+ Sbjct: 190 LVFLPFLVIDLVTAAILMSMGMMMVPPALVSLPFKLAFFVVADGWSLIASALVRSY 245 >gi|304412524|ref|ZP_07394130.1| flagellar biosynthetic protein FliP [Shewanella baltica OS183] gi|307307183|ref|ZP_07586921.1| flagellar biosynthetic protein FliP [Shewanella baltica BA175] gi|304349166|gb|EFM13578.1| flagellar biosynthetic protein FliP [Shewanella baltica OS183] gi|306910422|gb|EFN40853.1| flagellar biosynthetic protein FliP [Shewanella baltica BA175] Length = 244 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 86/245 (35%), Positives = 143/245 (58%), Gaps = 3/245 (1%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 ++R ++ L+ P+ + ++ ++ D + + T +S PI+L+M+T Sbjct: 2 IVRVLLLSILLLAPQALASEGLTLFTLDSAQDSQAVNIKLEILALMTAISFLPIMLMMLT 61 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R IIV +ILR +G+ PPN V++ +AL +T ++M P D+ + P +I Sbjct: 62 SFTRIIIVLAILRQALGLQQSPPNRVLVGIALILTIFIMRPVGDKIYKEAYLPYDQGKIE 121 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A+ P FM TR DL + +A+ T + + + + +L+P+F++SE Sbjct: 122 LMEAVSIAKVPLTRFMLAQTRATDLEQMLKIANEP---THMKTAEEVPFFVLMPAFVLSE 178 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +F+IGFL+ LPFL+ID++VA+++M+MGMMML P ISLPFK++ FVL+DGWS+ V Sbjct: 179 LKTAFQIGFLLFLPFLVIDLVVASVLMSMGMMMLSPLIISLPFKLMVFVLVDGWSMTVST 238 Query: 241 LVKSF 245 L SF Sbjct: 239 LTASF 243 >gi|126463729|ref|YP_001044843.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides ATCC 17029] gi|126105393|gb|ABN78071.1| flagellar biosynthetic protein FliP [Rhodobacter sphaeroides ATCC 17029] Length = 238 Score = 185 bits (469), Expect = 5e-45, Method: Composition-based stats. Identities = 91/226 (40%), Positives = 140/226 (61%), Gaps = 5/226 (2%) Query: 20 KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79 ++ +++ S++ V+ + T+LS+ P L +M+TCFP + V SILR +G+ Sbjct: 17 ATAQSLSLDLGDGGSLTARSVQLIAVITLLSLVPALAMMITCFPFIVTVLSILRQAIGLQ 76 Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139 PPN++I+SLALF+T+YVM P + GI PL N++ A+ A PF FM Sbjct: 77 QAPPNMLIVSLALFLTWYVMDPVFTEAWTRGIGPLTRNELDLPQALAAAAVPFRGFMTGR 136 Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199 L+ A + R + +L+PSF++SE++R+FEIGFLI LPFLIID Sbjct: 137 IDPDTLA-----ALQALRPGPAAPPSEASFSVLVPSFLLSEIQRAFEIGFLIYLPFLIID 191 Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++V+ ++M+MGMMM+PP +S+PFK+ FFV+ DGWSL+ LV+S+ Sbjct: 192 LVVSAVLMSMGMMMVPPAVVSMPFKLAFFVVADGWSLISGALVRSY 237 >gi|331645397|ref|ZP_08346501.1| flagellar biosynthetic protein FliP [Escherichia coli M605] gi|331045559|gb|EGI17685.1| flagellar biosynthetic protein FliP [Escherichia coli M605] Length = 250 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 82/214 (38%), Positives = 130/214 (60%), Gaps = 6/214 (2%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 + + ++ + T++ + P +++M+TCF R IIV S+LR +G+ PPN ++I + Sbjct: 36 GNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRLIIVLSLLRQALGLQQTPPNRILIGI 95 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 AL +T VM P + I P N+QIT T A+ A P FM T +K ++ M Sbjct: 96 ALSLTLLVMRPIWLNIYDHAIVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMT 155 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 + + + I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMG Sbjct: 156 IGGAKGNAA------DQDLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMG 209 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 MMML P +SLPFK++ FVLIDGWSL + L S Sbjct: 210 MMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243 >gi|315636956|ref|ZP_07892180.1| flagellar biosynthetic protein FliP [Arcobacter butzleri JV22] gi|315478786|gb|EFU69495.1| flagellar biosynthetic protein FliP [Arcobacter butzleri JV22] Length = 241 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 98/244 (40%), Positives = 145/244 (59%), Gaps = 4/244 (1%) Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61 ++ F LF ++ + + I +L +AP LL+MVT Sbjct: 1 MKIIFTVLFFSIFANAADAPMINLSVAAIEQPVQFVRTINIAIILALLVLAPTLLLMVTS 60 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F R IIVFS+LR MG+ PP+ +IISL+L +T ++M P ++ + I P M+ +I Sbjct: 61 FTRLIIVFSLLRQAMGLQQTPPSQIIISLSLILTIFIMEPYAKKAWDDAIVPYMDEKIGY 120 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 A + PF FM NTRE DL+LF + + + + +L+P+F++SEL Sbjct: 121 EVAFDKGVAPFKEFMIKNTREADLALFYRIKKEPNPK----NIEAVPLTLLMPAFIVSEL 176 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 R +FEIGFLI LPFL+ID+IVA+I+M++GMMMLPP ISLP K+IFF+++DGW L++ NL Sbjct: 177 RTAFEIGFLIFLPFLVIDIIVASILMSLGMMMLPPVMISLPIKIIFFIVVDGWQLIIGNL 236 Query: 242 VKSF 245 +SF Sbjct: 237 AQSF 240 >gi|331666527|ref|ZP_08367401.1| flagellar biosynthetic protein FliP [Escherichia coli TA271] gi|331065751|gb|EGI37635.1| flagellar biosynthetic protein FliP [Escherichia coli TA271] Length = 250 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 81/214 (37%), Positives = 131/214 (61%), Gaps = 6/214 (2%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 + + ++ + T++ + P +++M+TCF RFIIV S+LR +G+ PPN ++I + Sbjct: 36 GNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGI 95 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 AL +T VM P + + P N+QI + A+ A P FM T +K ++ M Sbjct: 96 ALSLTMLVMRPIWLNIYDHAVVPFENDQIPLSDALSTAATPLKRFMLAQTDKKAMAQIMT 155 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 + + D + I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMG Sbjct: 156 IGGAKGHAADQ------DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMG 209 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 MMML P +SLPFK++ FVLIDGWSL + L S Sbjct: 210 MMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243 >gi|126734123|ref|ZP_01749870.1| flagellar biosynthetic protein FliP [Roseobacter sp. CCS2] gi|126716989|gb|EBA13853.1| flagellar biosynthetic protein FliP [Roseobacter sp. CCS2] Length = 243 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 93/244 (38%), Positives = 142/244 (58%), Gaps = 3/244 (1%) Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61 +R ++ L + + D S++T ++ + T+LS+ P + IMVTC Sbjct: 1 MRRALIIAAVLMVALSGPAIAQEVSITFDDDGSLATRSIQLLILITVLSLVPGIAIMVTC 60 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 FP I VF+ILR +G+ PPN++I+SLALF+T++VM P + GI PL+ QI Sbjct: 61 FPFIITVFAILRQAIGLQQSPPNMLIVSLALFLTYFVMEPVFREAWSNGIDPLIQGQIAL 120 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 R EP VFM D F +A + I++PSF++SE+ Sbjct: 121 EEGFVRTIEPLQVFMLTRI---DPDTFTALADLRPDVSGNGPASDAPLSIVVPSFLLSEM 177 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 R+F++GFLI +PFLIID++VA ++M+MGMMM+PP +SLPFK+ FFV+ DGW+L+ +L Sbjct: 178 ERAFQVGFLIFMPFLIIDLVVAAVLMSMGMMMVPPAIVSLPFKLAFFVVADGWTLIATSL 237 Query: 242 VKSF 245 V+ + Sbjct: 238 VQGY 241 >gi|293408348|ref|ZP_06652187.1| fliP [Escherichia coli B354] gi|291471526|gb|EFF14009.1| fliP [Escherichia coli B354] Length = 250 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 82/214 (38%), Positives = 131/214 (61%), Gaps = 6/214 (2%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 + + ++ + T++ + P +++M+TCF RFIIV S+LR +G+ PPN ++I + Sbjct: 36 GNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGI 95 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 AL +T VM P + + P N+QIT T A+ A P FM T +K ++ M Sbjct: 96 ALSLTMLVMRPIWLNIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMT 155 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 + + + I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMG Sbjct: 156 IGGAKGNAA------DQDLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMG 209 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 MMML P +SLPFK++ FVLIDGWSL + L S Sbjct: 210 MMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243 >gi|212637763|ref|YP_002314288.1| flagellar biosynthesis protein FliP [Shewanella piezotolerans WP3] gi|212559247|gb|ACJ31701.1| Flagellar transport protein FliP [Shewanella piezotolerans WP3] Length = 242 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 133/245 (54%), Gaps = 4/245 (1%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 M R L + + A + + T+LS P LL+M+T Sbjct: 1 MWRVLLLLLVGFSSSAYANDGFTLFTLGDGAQAQSVNVKLEILALMTVLSFLPALLMMLT 60 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R I+V +ILR +G+ PPN V+I +AL MT ++M P + P QI Sbjct: 61 SFTRIIVVLAILRQALGLQQSPPNKVLIGIALVMTIFIMRPVGQAIYDEAFLPYDLGQIE 120 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 T A+ + P FM TRE DL + +A D I + +L+P+F++SE Sbjct: 121 LTEAVVKAEVPLRKFMLAQTRETDLEQMLKIADEP----TTLTADEIPFFVLMPAFVLSE 176 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +F+IGFL+ LPFL+ID++VA+++M+MGMMML P ISLPFK++ FVL+DGWS+ V Sbjct: 177 LKTAFQIGFLLFLPFLVIDLVVASVLMSMGMMMLSPLIISLPFKLMVFVLVDGWSMTVST 236 Query: 241 LVKSF 245 LV S+ Sbjct: 237 LVASY 241 >gi|320538198|ref|ZP_08038093.1| flagellar biosynthetic protein FliP [Treponema phagedenis F0421] gi|320145015|gb|EFW36736.1| flagellar biosynthetic protein FliP [Treponema phagedenis F0421] Length = 273 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 75/217 (34%), Positives = 125/217 (57%), Gaps = 2/217 (0%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P + ++ + T+++IAP LL+++T F R IV ++ + + VPP V+ Sbjct: 59 PRTNREVAFSIQLLLLLTLIAIAPSLLLLMTSFLRISIVLDFIKRALSLQQVPPTQVLNG 118 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 +ALF+T ++M P + +P+ + +I TA +P +FM + + Sbjct: 119 IALFLTLFIMWPVFNEVYTNSFKPMADGEINIETAYTEAEKPIRLFMYKQMAHDSSYITL 178 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 M+ + + + ILIP+F++ EL +F+IG + LPF+IIDM+VA+I+M+M Sbjct: 179 CMSMAKLPKPNTLA--DVPTHILIPAFILHELTIAFQIGIFLYLPFIIIDMVVASILMSM 236 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 GM+MLPP IS+PFK+I FVL+DGW+LL+ L SF+ Sbjct: 237 GMIMLPPVQISMPFKLILFVLVDGWNLLIGQLFYSFL 273 >gi|259417183|ref|ZP_05741102.1| flagellar biosynthetic protein FliP [Silicibacter sp. TrichCH4B] gi|259346089|gb|EEW57903.1| flagellar biosynthetic protein FliP [Silicibacter sp. TrichCH4B] Length = 248 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 100/237 (42%), Positives = 151/237 (63%), Gaps = 6/237 (2%) Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIV 68 + LV P++ A+ +N+ SIS ++ + T+LS+AP LL+M+TCFP I V Sbjct: 15 VLLVQPQVALAQEL---SLNLADGQSISARTIQLILLITVLSVAPGLLVMLTCFPFLITV 71 Query: 69 FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128 SILR +G+ PPN+++ISLA+F+T++VM P + + GI PL++ ++ A++R Sbjct: 72 LSILRQAIGLQQAPPNMLMISLAMFLTYFVMEPVFTEAWDTGIAPLIDEELEVVPALERA 131 Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188 EPF VFM N D + +A + +LIPSFM+SE+ R+FEIG Sbjct: 132 VEPFRVFMANRL---DPDTYYAIADLRPGTQGSDPSPESPLSVLIPSFMLSEITRAFEIG 188 Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 FL+ LPFL+ID++ A ++M+MGMMM+PP +SLPFK+ FFV+ DGWSL+ LV+S+ Sbjct: 189 FLVFLPFLVIDLVTAAVLMSMGMMMVPPALVSLPFKLAFFVVADGWSLIASALVRSY 245 >gi|126730033|ref|ZP_01745845.1| flagellar biosynthetic protein FliP [Sagittula stellata E-37] gi|126709413|gb|EBA08467.1| flagellar biosynthetic protein FliP [Sagittula stellata E-37] Length = 245 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 95/226 (42%), Positives = 140/226 (61%), Gaps = 3/226 (1%) Query: 20 KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79 ++ D+ S++ V+ + T+LS+AP + IMVTCFP + V +ILR +G+ Sbjct: 22 PAAAQDISIDLGGGSVTATSVQLILLITLLSLAPGIAIMVTCFPFMVTVLAILRQAVGLQ 81 Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139 PPN++I+SLALF+T++VM P + + G+QPL+ QI A R PF FM Sbjct: 82 QSPPNMLIVSLALFLTYFVMEPVFTEAWDTGVQPLIEEQIEVEEAAIRTLAPFRDFMAGR 141 Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199 T D + MA + +L+PSFM+SE+ R+F++GFLI LPFLIID Sbjct: 142 T---DPDTYRAMADLRPDARETVLAPEAPLSVLVPSFMLSEVARAFQVGFLIFLPFLIID 198 Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++VA ++M+MGMMM+PP +SLPFK+ FFV+ DGWSLL +LV+ + Sbjct: 199 LVVAAVLMSMGMMMVPPAIVSLPFKLAFFVVADGWSLLAGSLVRGY 244 >gi|77464887|ref|YP_354391.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides 2.4.1] gi|77389305|gb|ABA80490.1| Type III secretion system inner membrane P protein [Rhodobacter sphaeroides 2.4.1] Length = 239 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 91/226 (40%), Positives = 141/226 (62%), Gaps = 5/226 (2%) Query: 20 KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79 ++ +++ S++ V+ + T+LS+ P L +M+TCFP + V SILR +G+ Sbjct: 18 ATAQSLSLDLGDGGSLTARSVQLIAVITLLSLVPALAMMITCFPFIVTVLSILRQAIGLQ 77 Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139 PPN++I+SLALF+T+YVM P + GI PL N++ A+ A PF FM Sbjct: 78 QAPPNMLIVSLALFLTWYVMDPVFTEAWTRGIGPLTRNELDLPQALAAAAVPFRGFMTGR 137 Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199 L+ A + R + + +L+PSF++SE++R+FEIGFLI LPFLIID Sbjct: 138 IDPDTLA-----ALQALRPGPAAPPSEVSFSVLVPSFLLSEIQRAFEIGFLIYLPFLIID 192 Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++V+ ++M+MGMMM+PP +S+PFK+ FFV+ DGWSL+ LV+S+ Sbjct: 193 LVVSAVLMSMGMMMVPPAVVSMPFKLAFFVVADGWSLISGALVRSY 238 >gi|312883878|ref|ZP_07743595.1| type III secretion system protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309368336|gb|EFP95871.1| type III secretion system protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 216 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 71/208 (34%), Positives = 124/208 (59%), Gaps = 2/208 (0%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + +L++ P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ ++M Sbjct: 8 LNLIVSLALLALVPFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMAMYGLAIILSIFIM 67 Query: 100 SPTLDRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +P + + Q + + + I +P+ F++ + RE + F D A + Sbjct: 68 APVGFETYDYVKQNEISLEDPESIEGVIDNGLQPYREFLKKHIRETESVFFTDAARALWP 127 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + + + +L+P+F +SEL R+FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ P Sbjct: 128 KKYVERLETDSLLLLLPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPM 187 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 +ISLPFK++ FVL+DGW+ L LV S+ Sbjct: 188 TISLPFKLLLFVLLDGWTKLTHGLVLSY 215 >gi|221640808|ref|YP_002527070.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides KD131] gi|221161589|gb|ACM02569.1| Type III secretion system inner membrane P protein [Rhodobacter sphaeroides KD131] Length = 238 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 92/226 (40%), Positives = 142/226 (62%), Gaps = 5/226 (2%) Query: 20 KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79 ++ +++ S++T V+ + T+LS+ P L +M+TCFP + V SILR +G+ Sbjct: 17 AAAQSLSLDLGDSGSLATRSVQLIAVITLLSLVPALAMMITCFPFIVTVLSILRQAIGLQ 76 Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139 PPN++I+SLALF+T+YVM P + GI PL N++ A+ A PF FM Sbjct: 77 QAPPNMLIVSLALFLTWYVMDPVFTEAWTKGIAPLTRNELDLPQALAAAAIPFRSFMAGR 136 Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199 L+ A + R + + +L+PSF++SE++R+FEIGFLI LPFLIID Sbjct: 137 IDPDTLA-----ALQALRPGPAAPPSEVSFSVLVPSFLLSEIQRAFEIGFLIYLPFLIID 191 Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++V+ ++M+MGMMM+PP +S+PFK+ FFV+ DGWSL+ LV+S+ Sbjct: 192 LVVSAVLMSMGMMMVPPAVVSMPFKLAFFVVADGWSLISGALVRSY 237 >gi|149200773|ref|ZP_01877748.1| Flagellar transport protein FliP [Roseovarius sp. TM1035] gi|149145106|gb|EDM33132.1| Flagellar transport protein FliP [Roseovarius sp. TM1035] Length = 246 Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 84/226 (37%), Positives = 140/226 (61%), Gaps = 4/226 (1%) Query: 20 KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79 + L + + + + ++ + T L++ P L++ +T F R IIV SILR MG Sbjct: 21 QQGLPAITLSDENGTTYSLSLQILALMTALTVLPSLVLGMTAFTRIIIVLSILRQAMGTM 80 Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139 PPN V+I++ALF++F+VM P L + + P ++ Q+ A++ + FM N Sbjct: 81 QTPPNQVLIAIALFLSFFVMQPVLTEVYDTALSPYLDGQMAPDVAVRLAWDKLSGFMLAN 140 Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199 TR+ DL +F ++A + + + +L+P+++ SEL+ +F+IGFL+ LPFL+ID Sbjct: 141 TRQNDLLMFAELAG----DAPYASDAEVPVAVLLPAYITSELKTAFQIGFLLFLPFLVID 196 Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M++A+I+MA+GMMML P +SLPFK++ FVL+DGW+L + +L SF Sbjct: 197 MVIASILMALGMMMLSPMIVSLPFKLLLFVLVDGWALTMGSLASSF 242 >gi|188496180|ref|ZP_03003450.1| flagellar biosynthetic protein FliP [Escherichia coli 53638] gi|188491379|gb|EDU66482.1| flagellar biosynthetic protein FliP [Escherichia coli 53638] Length = 250 Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 83/214 (38%), Positives = 131/214 (61%), Gaps = 6/214 (2%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 + + ++ + T++ + P + +M+TCF RFIIV S+LR +G+ PPN ++I + Sbjct: 36 GNTQEYSVKIQVLILMTLVGLLPTMALMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGI 95 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 AL +T VM P + + P N+QIT T A+ A P FM T +K ++ M Sbjct: 96 ALSLTMLVMRPIWLNIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMT 155 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 + + D + I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMG Sbjct: 156 IGGAKGNAADQ------DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMG 209 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 MMML P +SLPFK++ FVLIDGWSL + L S Sbjct: 210 MMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243 >gi|325295421|ref|YP_004281935.1| flagellar biosynthetic protein FliP [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065869|gb|ADY73876.1| flagellar biosynthetic protein FliP [Desulfurobacterium thermolithotrophum DSM 11699] Length = 242 Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 103/246 (41%), Positives = 160/246 (65%), Gaps = 6/246 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMN-IPADLSISTWIVRTFGIFTILSIAPILLIMV 59 M +Y A+ + L++ +S + +N L ++ + TILS+AP +LI V Sbjct: 1 MKKYSQVAIVAIAINLLYISTSYGETVNDFLPQLGNLDITLKILFLITILSLAPAILITV 60 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R +I+ S+LR +G PPN VII+L+LF+T + M+PT + E+ IQP +N +I Sbjct: 61 TSFTRIVIILSLLRHALGTPQTPPNQVIIALSLFLTLFTMAPTFQQIDELAIQPYINKKI 120 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 ++ AI+R +EP FM NTR++DL LF+D+ RN + I LIP+FM+S Sbjct: 121 SDVEAIKRASEPIKNFMLRNTRKEDLKLFLDI-----RNEKPSSPQEISMLTLIPAFMVS 175 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 E+R + E+ F+I LPF++ID++VA+I+M+MGMMM+PP +SLPFK+I FVL DGW LL++ Sbjct: 176 EIRTALEVVFVIFLPFIVIDLLVASILMSMGMMMIPPMMLSLPFKLILFVLSDGWELLIK 235 Query: 240 NLVKSF 245 +++ S+ Sbjct: 236 SIILSY 241 >gi|254466138|ref|ZP_05079549.1| flagellar biosynthetic protein FliP [Rhodobacterales bacterium Y4I] gi|206687046|gb|EDZ47528.1| flagellar biosynthetic protein FliP [Rhodobacterales bacterium Y4I] Length = 247 Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 98/233 (42%), Positives = 144/233 (61%), Gaps = 6/233 (2%) Query: 13 TPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72 P+ A+ +++ S+S ++ + T+LS+AP LLIM+TCFP + V SIL Sbjct: 19 MPQTALAQEL---SLSLADGESVSARSIQLILLITVLSLAPGLLIMITCFPFLVTVLSIL 75 Query: 73 RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132 R G+G+ PPN+++ISLALF+T++VM P + GI PL+ Q+ AI R EPF Sbjct: 76 RQGIGLQQAPPNMLMISLALFLTYFVMEPVFTEAWNSGISPLLEEQLEPGEAISRSLEPF 135 Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192 FM N D F +A + L+PSF++SE+ R+F+IGFL+ Sbjct: 136 RAFMANRL---DPDTFYAIADLRPETQGMDPVPQAPLSALVPSFLLSEIARAFQIGFLVF 192 Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LPFL+ID++VA ++M+MGMMM+PP +SLPFK+ FFV+ DGWSL+ LV+S+ Sbjct: 193 LPFLVIDLVVAAVLMSMGMMMVPPAIVSLPFKLAFFVVADGWSLIATALVRSY 245 >gi|323171041|gb|EFZ56690.1| flagellar biosynthetic protein FliP [Escherichia coli LT-68] Length = 250 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 82/214 (38%), Positives = 131/214 (61%), Gaps = 6/214 (2%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 + + ++ + T++ + P +++M+TCF RFIIV S+LR +G+ PPN ++I + Sbjct: 36 GNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGI 95 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 AL +T VM P + + P N+QI + A+ A P FM T +K ++ M Sbjct: 96 ALSLTMLVMRPIWLNIYDHAVVPFENDQIPLSDALSTAATPLKRFMLAQTDKKAMAQIMT 155 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 + + D + I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMG Sbjct: 156 IGGAKGNAADQ------DLTIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMG 209 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 MMML P +SLPFK+I FVLIDGWSL + L S Sbjct: 210 MMMLSPLIVSLPFKLILFVLIDGWSLTIGTLTTS 243 >gi|332559786|ref|ZP_08414108.1| FliP2 [Rhodobacter sphaeroides WS8N] gi|332277498|gb|EGJ22813.1| FliP2 [Rhodobacter sphaeroides WS8N] Length = 238 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 91/224 (40%), Positives = 140/224 (62%), Gaps = 5/224 (2%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 + +++ S++ V+ + T+LS+ P L +M+TCFP + V SILR +G+ Sbjct: 19 AQSLSLDLGDGGSLTARSVQLIAVITLLSLVPALAMMITCFPFIVTVLSILRQAIGLQQA 78 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 PPN++I+SLALF+T+YVM P + GI PL N++ A+ A PF FM Sbjct: 79 PPNMLIVSLALFLTWYVMDPVFTEAWTRGIGPLTRNELDLPQALAAAAVPFRGFMTGRID 138 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 L+ A + R + + +L+PSF++SE++R+FEIGFLI LPFLIID++ Sbjct: 139 PDTLA-----ALQALRPGPAAPPSEVSFSVLVPSFLLSEIQRAFEIGFLIYLPFLIIDLV 193 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 V+ ++M+MGMMM+PP +S+PFK+ FFV+ DGWSL+ LV+S+ Sbjct: 194 VSAVLMSMGMMMVPPAVVSMPFKLAFFVVADGWSLISGALVRSY 237 >gi|217077267|ref|YP_002334985.1| flagellar biosynthesis protein FliP [Thermosipho africanus TCF52B] gi|217037122|gb|ACJ75644.1| flagellar biosynthetic protein FliP [Thermosipho africanus TCF52B] Length = 251 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 83/249 (33%), Positives = 141/249 (56%), Gaps = 6/249 (2%) Query: 2 IRYCFFALFLVTPELVFAKSSLHD-----VMNIPADLSISTWIVRTFGIFTILSIAPILL 56 ++ F +FLV + FA+ + ++ P + + T+LS+AP +L Sbjct: 1 MKRLFVLIFLVIVFVSFAQDEVPLPNISIQLSPPQQPRDLVNTLEILLLLTVLSLAPSIL 60 Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116 I+ T F R IIVFS LR +G PPN ++I LALF+TF++M P + I P +N Sbjct: 61 ILFTSFTRIIIVFSFLRNALGTRQTPPNQILIGLALFLTFFIMQPVWNDIYNNAITPYLN 120 Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176 ++I R + FM + + M + + +I + +LIP+F Sbjct: 121 SEIGYEELFSRSMDRLRTFMITELKIHHNEDNVFM-LADNVGKEIDSVEEAPNSVLIPAF 179 Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236 +I EL F++G L+ +PF+++DM+VA+I++++GM+M+PP +SLPFK++ FVL++GW + Sbjct: 180 VIGELEIGFKMGILLYIPFIVMDMVVASILLSLGMIMIPPVLVSLPFKILLFVLVNGWDM 239 Query: 237 LVENLVKSF 245 L+ +L+KSF Sbjct: 240 LIGSLIKSF 248 >gi|1346805|sp|P37828|PRO2_XANCG RecName: Full=Pathogenicity-related ORF2 gi|901847|gb|AAA69968.1| pathogenicity protein [Xanthomonas campestris] Length = 216 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 115/206 (55%), Gaps = 2/206 (0%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 + +L + P ++VT + + ++V +LR +G+ VPPN+V+ +AL ++ +VM+P Sbjct: 10 LLVVVIMLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAP 69 Query: 102 TLDRSIEMGIQPLMNNQITETTA--IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 + + Q + EPF F+ +TRE++ + FM A Sbjct: 70 VGMEAFKAAAQNYGAGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKD 129 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + +L P+F +SEL +F IGFL+ L F++ID++VA +MAMG+ + PT++ Sbjct: 130 KAATLKSDDLLVLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNV 189 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 ++PFK++ FV +DGWS+L+ LV S+ Sbjct: 190 AIPFKLLLFVAMDGWSMLIHGLVLSY 215 >gi|89056669|ref|YP_512120.1| flagellar biosynthesis protein FliP [Jannaschia sp. CCS1] gi|88866218|gb|ABD57095.1| flagellar biosynthetic protein FliP [Jannaschia sp. CCS1] Length = 243 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 94/244 (38%), Positives = 147/244 (60%), Gaps = 7/244 (2%) Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61 + C L+ A + +++ S++ + + ++LS+AP L +MVTC Sbjct: 6 LTRCLVVAALLAISWPSAAIAQEISLDLGDGSSLTARSFQLIALISVLSLAPGLAVMVTC 65 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 FP + V SILR +G+ PPN++I+SLALF+T++VM+P + + GI PL+ ++T Sbjct: 66 FPFVVTVLSILRQAIGLQQSPPNMLIVSLALFLTYFVMAPVFEEAYRAGIAPLIAGELTP 125 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 AI + EPF FM N L ++ + + +LIPSFM+SE+ Sbjct: 126 DAAIPLIYEPFRGFMLNRVDTSTLVSLAEL-------RPGADAANPDPSVLIPSFMLSEV 178 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 R+F+IGFL+ LPFL+ID++VA I+M+MGMMM+PP +SLPFK+ FFV+ DGW+L+ L Sbjct: 179 ERAFQIGFLVFLPFLVIDLVVAAILMSMGMMMVPPAIVSLPFKLAFFVVADGWALITGAL 238 Query: 242 VKSF 245 V+S+ Sbjct: 239 VRSY 242 >gi|294678995|ref|YP_003579610.1| flagellar biosynthetic protein FliP [Rhodobacter capsulatus SB 1003] gi|294477815|gb|ADE87203.1| flagellar biosynthetic protein FliP [Rhodobacter capsulatus SB 1003] Length = 240 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 105/240 (43%), Positives = 147/240 (61%), Gaps = 3/240 (1%) Query: 6 FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65 AL L L + +++ + S++ + T+LS+AP L IMVTCFP Sbjct: 3 VLALALTLMILAAPAGAQEITLDMGGNGSLTNSSLILIAGITLLSLAPGLAIMVTCFPFI 62 Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 + V SILR MG+ PPN++IISLALF+T++VM PT S + GI+PL+ +I TA Sbjct: 63 VTVLSILRQAMGLQQSPPNMLIISLALFLTWFVMEPTFMASYQAGIEPLIAQKIDIVTAF 122 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185 +R EPF +FM T D F +A T IL+PSFM+SE+ R+F Sbjct: 123 ERGVEPFRIFMAGRT---DPETFTQLAAIREGATYTGTAREAPLSILVPSFMLSEITRAF 179 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 EIGFL+ LPFLIID++V+ I+M+MGMMM+PP ++LPFK+ FFV+ +GW LL LV+S+ Sbjct: 180 EIGFLVFLPFLIIDLVVSAILMSMGMMMVPPAVVALPFKLAFFVVANGWVLLSGALVRSY 239 >gi|283782107|ref|YP_003372862.1| flagellar biosynthetic protein FliP [Pirellula staleyi DSM 6068] gi|283440560|gb|ADB19002.1| flagellar biosynthetic protein FliP [Pirellula staleyi DSM 6068] Length = 297 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 81/215 (37%), Positives = 127/215 (59%), Gaps = 6/215 (2%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + ++ + T+LS+AP +L+M T F R ++V +LR +G +PP+ VI +LA+F+T Sbjct: 79 SSTLQIMLLLTVLSLAPAILLMTTSFVRIVVVLGLLRQALGTNQLPPSQVITALAMFLTL 138 Query: 97 YVMSPTLDRSIEMGIQPLMNN-QITETTAIQRVAEPFWVFMRNNT----REKDLSLFMDM 151 +M+PT + I+P + +T A R + P FM D+ LF + Sbjct: 139 LIMTPTWNSVYHEAIEPYTSGADLTPEEAWNRGSLPIKRFMSRQIEVAGNSDDVWLFYEY 198 Query: 152 AHSS-HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 D + +L+P+FM+SEL+ SF IGF I LPFLI+D++V+++ ++MG Sbjct: 199 LPEENRPAKPPETYDEVPLSVLLPAFMLSELKTSFLIGFQIYLPFLILDLVVSSVTISMG 258 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMMLPP ISLP K++ FVL+DGW+L V L++SF Sbjct: 259 MMMLPPVMISLPLKLLLFVLVDGWTLTVRMLLESF 293 >gi|221639477|ref|YP_002525739.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides KD131] gi|221160258|gb|ACM01238.1| Flagellar biosynthetic protein fliP [Rhodobacter sphaeroides KD131] Length = 249 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 89/220 (40%), Positives = 138/220 (62%), Gaps = 4/220 (1%) Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85 + + + ++ + T L++ P L++ ++ F R IIV SILR +G PPN Sbjct: 31 TVTEGTGGTSYSLSLQILALMTALTVLPSLVLGMSAFTRIIIVLSILRQALGTQQTPPNQ 90 Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145 V+I+LALF+TF+VM PTL E + P ++ QI AI+R F+ NTR+ DL Sbjct: 91 VLIALALFLTFFVMQPTLGALYEQSLSPFLDGQIEAQPAIERGGAIMKDFLIANTRQNDL 150 Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205 +F D+A + + + + L+P+FM SEL+ +F+IGFL+ LPFL+IDM++A+I Sbjct: 151 LMFSDLAGAG----PYAEPTEVPFSTLLPAFMTSELKTAFQIGFLLFLPFLVIDMVIASI 206 Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MA+GMMML P +SLPFK++ FVL+DGW+L V +L ++ Sbjct: 207 LMALGMMMLSPMLVSLPFKLLLFVLVDGWALTVGSLAATY 246 >gi|170021379|ref|YP_001726333.1| flagellar biosynthesis protein FliP [Escherichia coli ATCC 8739] gi|169756307|gb|ACA79006.1| flagellar biosynthetic protein FliP [Escherichia coli ATCC 8739] Length = 250 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 81/214 (37%), Positives = 131/214 (61%), Gaps = 6/214 (2%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 + + ++ + T++ + P +++M+TCF RFIIV S+LR +G+ PPN ++I + Sbjct: 36 GNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGI 95 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 AL +T VM P + + P N++IT T A+ A P FM T +K ++ M Sbjct: 96 ALSLTMLVMRPIWLNIYDHAVVPFENDRITLTDALSTAATPLKRFMLAQTDKKAMAQIMT 155 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 + + + I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMG Sbjct: 156 IGGAKGNAA------DQDLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMG 209 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 MMML P +SLPFK++ FVLIDGWSL + L S Sbjct: 210 MMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243 >gi|83646770|ref|YP_435205.1| flagellar biosynthesis protein FliP [Hahella chejuensis KCTC 2396] gi|83634813|gb|ABC30780.1| flagellar biosynthetic protein FliP [Hahella chejuensis KCTC 2396] Length = 243 Score = 184 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 90/209 (43%), Positives = 137/209 (65%), Gaps = 4/209 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 ++ + T+LS+AP LLI +T F R +IV S+LR GM PPN VII+L+LF+T Sbjct: 38 ASALQVLAVLTVLSLAPALLIALTSFTRIVIVLSMLRYAFGMQQTPPNTVIIALSLFLTL 97 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 + M+P ++ + +QP + ++ T A+ P FM TREKDL+L ++MA Sbjct: 98 FTMAPVFNKIDQQAVQPYLAGELVFTEAVNAGLAPMREFMVRQTREKDLALAIEMAGEES 157 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 T + I LI +FM+SEL+ +F+IGF+I LPFL+ID++ A+++M+MGM+M+PP Sbjct: 158 PET----LNDISNTSLITAFMLSELQTAFQIGFVIFLPFLLIDLVSASVLMSMGMIMVPP 213 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +ISLP K++ FVLI+GW+L+ + LV SF Sbjct: 214 LTISLPVKILMFVLIEGWTLVAQALVGSF 242 >gi|262284525|gb|ACY41062.1| VscR [Vibrio alginolyticus] Length = 216 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 71/208 (34%), Positives = 126/208 (60%), Gaps = 2/208 (0%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + +L++ P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ ++M Sbjct: 8 LNLIVSLALLALIPFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIM 67 Query: 100 SPTLDRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +P + + Q + + + I+ +P+ F++ + RE ++ F D A + Sbjct: 68 APVGFETYDYVKQHDISLEDSASVEGLIESGLQPYREFLKKHIRETEVIFFTDAARTLWP 127 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + + + +L+P+F +SEL R+FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ P Sbjct: 128 QKYVDRLESDSLLLLLPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPM 187 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 +ISLPFK++ FVL+DGW+ L LV S+ Sbjct: 188 TISLPFKLLLFVLLDGWTKLTHGLVLSY 215 >gi|226313054|ref|YP_002772948.1| flagellar biosynthetic protein FliP precursor [Brevibacillus brevis NBRC 100599] gi|226096002|dbj|BAH44444.1| flagellar biosynthetic protein FliP precursor [Brevibacillus brevis NBRC 100599] Length = 253 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 98/248 (39%), Positives = 152/248 (61%), Gaps = 12/248 (4%) Query: 6 FFALFLVTPELVFAKSSLHDVM--------NIPADLSISTWIVRTFGIFTILSIAPILLI 57 A+ L P++ A ++ ++ ++ I T+LS+AP +L+ Sbjct: 10 LVAVLLSVPDMAMAAPVGTPLVPSIDLKIGGGTGTPQETSTAIQLLLILTVLSVAPAILL 69 Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 ++T F R IIV S +R + +PPN V+I+LALFMTF++M+PTL + E +QP M Sbjct: 70 LMTSFARIIIVLSFVRNALATQQMPPNQVLIALALFMTFFIMAPTLGQVNETAVQPFMQG 129 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177 ++T+ A PF FM TREKDL+LF++ + T I L+P++ Sbjct: 130 KLTQQQAFDAAVIPFKQFMAKQTREKDLALFLEYTKAERPKT----IQDIPLNALVPAYA 185 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 ISEL+ +F+IGF+I +PFL+IDMI+++I+M MGMMMLPP ISLPFK++ F+++DGW L+ Sbjct: 186 ISELKTAFQIGFMIFIPFLVIDMIISSILMGMGMMMLPPVMISLPFKILLFIMVDGWYLI 245 Query: 238 VENLVKSF 245 V++L+ SF Sbjct: 246 VKSLLTSF 253 >gi|108763107|ref|YP_630667.1| type III secretion system protein [Myxococcus xanthus DK 1622] gi|108466987|gb|ABF92172.1| FliP/MopC/SpaP family protein [Myxococcus xanthus DK 1622] Length = 231 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 124/222 (55%), Gaps = 9/222 (4%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 S ++ + + + P L+M T F + +V SI+R+ +G +PP VI LA+ Sbjct: 10 SFASRPLILILALAAMGLVPFALMMATSFVKISVVLSIVRSALGTQQIPPTQVITGLAII 69 Query: 94 MTFYVMSPTLDRSIEMGIQPL---------MNNQITETTAIQRVAEPFWVFMRNNTREKD 144 +T Y+M+P + + + A + EP ++ KD Sbjct: 70 LTVYIMAPVGQQMYRAAGLDIWAKGPGVFSSETVGSMLGAANKSKEPLREWLIKKVTTKD 129 Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204 +LF ++A + D + ++ ++IP+F++SEL+ +F+IGFL+ +PF++IDM+VA Sbjct: 130 RALFFNLAKKMRKGEDRDAVESNDFMVIIPAFVVSELKEAFQIGFLLFVPFIVIDMVVAN 189 Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 I++A+GM ML PT+IS+PFK++ FVL+DGW L+ + LV ++ Sbjct: 190 ILLALGMHMLSPTTISMPFKLLLFVLVDGWYLIAKGLVVGYL 231 >gi|153832450|ref|ZP_01985117.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio harveyi HY01] gi|156974015|ref|YP_001444922.1| type III secretion system protein [Vibrio harveyi ATCC BAA-1116] gi|41834184|gb|AAS13322.1| VscR [Vibrio harveyi] gi|148871245|gb|EDL70117.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio harveyi HY01] gi|156525609|gb|ABU70695.1| hypothetical protein VIBHAR_01726 [Vibrio harveyi ATCC BAA-1116] Length = 216 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 71/208 (34%), Positives = 125/208 (60%), Gaps = 2/208 (0%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + +L++ P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ ++M Sbjct: 8 LNLIVTLALLALIPFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIM 67 Query: 100 SPTLDRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +P + + Q + + + I+ +P+ F++ + RE + F D A + Sbjct: 68 APVGFETYDYVTQHEISLEDSESIEGLIESGLQPYREFLKKHIRETESVFFTDAARTLWP 127 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + + + +L+P+F +SEL R+FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ P Sbjct: 128 QKYVDRLESDSLLLLLPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPM 187 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 +ISLPFK++ FVL+DGW+ L LV S+ Sbjct: 188 TISLPFKLLLFVLLDGWTKLTHGLVLSY 215 >gi|161520303|ref|YP_001583730.1| type III secretion system protein [Burkholderia multivorans ATCC 17616] gi|189353518|ref|YP_001949145.1| type III secretion system protein [Burkholderia multivorans ATCC 17616] gi|160344353|gb|ABX17438.1| Yop virulence translocation R [Burkholderia multivorans ATCC 17616] gi|189337540|dbj|BAG46609.1| type III secretion protein SctR [Burkholderia multivorans ATCC 17616] Length = 224 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 71/211 (33%), Positives = 122/211 (57%), Gaps = 5/211 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V + L IAP +MVT + + ++V +LR+ +G+ VPPNLV+ +AL ++ ++M Sbjct: 8 VALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGVQQVPPNLVLNGIALILSLFIM 67 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAI-----QRVAEPFWVFMRNNTREKDLSLFMDMAHS 154 +P + + +TA P F+ ++TR++D F+ A S Sbjct: 68 APVGMSIRDALQARHFDASGQLSTADVGALADAALPPIKDFLVSHTRQRDREFFVRTATS 127 Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214 + +L+PSF ++EL ++F+IGF+I + F+++D++VA I++A+GM M+ Sbjct: 128 VWPKNRADGIKDDDLLVLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANILLALGMQMI 187 Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 PT+IS+PFK++ FV +DGWSLLV LV S+ Sbjct: 188 SPTTISVPFKLLLFVALDGWSLLVHGLVLSY 218 >gi|221200568|ref|ZP_03573610.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia multivorans CGD2M] gi|221209245|ref|ZP_03582235.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia multivorans CGD2] gi|221170901|gb|EEE03358.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia multivorans CGD2] gi|221179909|gb|EEE12314.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia multivorans CGD2M] Length = 224 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 71/211 (33%), Positives = 122/211 (57%), Gaps = 5/211 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V + L IAP +MVT + + ++V +LR+ +G+ VPPNLV+ +AL ++ ++M Sbjct: 8 VALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIM 67 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAI-----QRVAEPFWVFMRNNTREKDLSLFMDMAHS 154 +P + + +TA P F+ ++TR++D F+ A S Sbjct: 68 APVGMSIRDALQARHFDTSGQLSTADVGVLADAALPPIKDFLVSHTRQRDRDFFVRTATS 127 Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214 + +L+PSF ++EL ++F+IGF+I + F+++D++VA I++A+GM M+ Sbjct: 128 VWPKNRADDIKDDDLLVLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANILLALGMQMI 187 Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 PT+IS+PFK++ FV +DGWSLLV LV S+ Sbjct: 188 SPTTISVPFKLLLFVALDGWSLLVHGLVLSY 218 >gi|332669209|ref|YP_004452217.1| flagellar biosynthetic protein FliP [Cellulomonas fimi ATCC 484] gi|332338247|gb|AEE44830.1| flagellar biosynthetic protein FliP [Cellulomonas fimi ATCC 484] Length = 240 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 83/212 (39%), Positives = 133/212 (62%), Gaps = 4/212 (1%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 + + T+LS+AP L++M T F + +V S R +G+ VPPN V+ LALF Sbjct: 29 GTPSSSIVVLLAITLLSVAPALILMTTSFTKIFVVLSFTRNALGLQGVPPNQVLAGLALF 88 Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 ++ +VM+P + +G+QP ++ +T + A+ + P FM TRE+DL+L A Sbjct: 89 LSLFVMAPVVSDINSVGVQPYLDGSLTFSQAVDVGSGPLREFMLGQTREQDLALLTRAAD 148 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 + + + + L+P+F++SELR +F +GF+I +PFL+ID++V+ +M+MGMMM Sbjct: 149 QENP----ASPEDVPFATLVPAFLLSELRSAFIMGFVIFVPFLVIDLVVSASLMSMGMMM 204 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LPP ISLPFK++ FVL+DGW L+V +LV S+ Sbjct: 205 LPPVMISLPFKILLFVLVDGWGLVVTSLVGSY 236 >gi|302338093|ref|YP_003803299.1| flagellar biosynthetic protein FliP [Spirochaeta smaragdinae DSM 11293] gi|301635278|gb|ADK80705.1| flagellar biosynthetic protein FliP [Spirochaeta smaragdinae DSM 11293] Length = 260 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 75/218 (34%), Positives = 125/218 (57%), Gaps = 6/218 (2%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P ++ +++++P ++I+ TCF R IVF ++ + + VPPN V++ Sbjct: 46 PQSNQEVALSIQLLLFLAVITLSPSIIILTTCFLRIAIVFDFIKRSLSLQQVPPNQVMMG 105 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT--REKDLSL 147 +A+F+T ++M PT ++ + +P + +I A P +FM +++ L Sbjct: 106 VAIFLTIFIMWPTGEQIYQNSFRPFADGEIGIQEMYDEAAAPLRLFMYRQMDGDHENIQL 165 Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 FM M + +LIPSF++ EL +F+IG L+ +PF+IIDM+VA+ +M Sbjct: 166 FMRMRGLGKPE----NFSQVPTYVLIPSFVLHELTVAFKIGILLFVPFIIIDMVVASTLM 221 Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MGM+MLPP ISLPFK+I FVL+DGW L+ + L+ SF Sbjct: 222 SMGMIMLPPVMISLPFKLILFVLVDGWDLITQQLILSF 259 >gi|45657250|ref|YP_001336.1| flagellar biosynthesis protein FliP [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600488|gb|AAS69973.1| flagellar protein export system [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 267 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 141/226 (62%), Gaps = 7/226 (3%) Query: 23 LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82 L+ +N ++ + + TILS+AP +++ +T F + +IV +R + + ++P Sbjct: 45 LNINVNEAKSPRETSLSLMVLFLVTILSLAPAIVMSLTSFTKIVIVLDFVRRALSIQNLP 104 Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN--- 139 PN V++ LALFMTF++M+PTL+ E + P + +I ++ P FM Sbjct: 105 PNQVMMGLALFMTFFIMAPTLNTVNEKALGPYLEGKIDTNAFFEKGMIPIREFMMRQIGT 164 Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199 + KD++LF+ + + D + +LIP+FM+SE++++F IG +I +PF++ID Sbjct: 165 SGAKDVALFLKIGKVEK----VESFDDVPSYVLIPAFMLSEIKKAFWIGIVIFIPFIVID 220 Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++VA+ +++MG+MMLPP +SLPFK+I FVL+DGW+L+V LV+S+ Sbjct: 221 LVVASALLSMGLMMLPPVMVSLPFKLILFVLVDGWNLIVYELVRSY 266 >gi|325109027|ref|YP_004270095.1| flagellar biosynthetic protein FliP [Planctomyces brasiliensis DSM 5305] gi|324969295|gb|ADY60073.1| flagellar biosynthetic protein FliP [Planctomyces brasiliensis DSM 5305] Length = 340 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 94/248 (37%), Positives = 139/248 (56%), Gaps = 21/248 (8%) Query: 15 ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74 VF + D M P L+ + I+ + ++ AP L+IM TCF R I+V +LR Sbjct: 74 ASVFPQGFDPDKMLSPQGLTPTLKILILLTLISL---APSLVIMTTCFVRMIVVLGLLRQ 130 Query: 75 GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM--------NNQITETTAIQ 126 +G +PPN V++SL+LFMT +M P S G+QP + + A++ Sbjct: 131 ALGTQQLPPNQVLVSLSLFMTIMIMWPVWQESYRAGVQPYSSSTYETTADQEEGLQLALE 190 Query: 127 RVAEPFWVFMRNNT----REKDLSLFMDMAHSSHRN------TDITKNDHIEYRILIPSF 176 R EP FM + E + +F+D + T+ + +LIP+F Sbjct: 191 RSLEPIRNFMSDQIYRTGNENAVWMFIDYQKPAEGTAAAETWTEPQSFADVPTTVLIPAF 250 Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236 M+SEL+ +F IGF I LPF+IIDM++A+I+++MGMMMLPP ISLPFK++ FVL+DGW L Sbjct: 251 MMSELKTAFVIGFQIYLPFIIIDMVIASILISMGMMMLPPVLISLPFKLLLFVLVDGWYL 310 Query: 237 LVENLVKS 244 VE L++S Sbjct: 311 TVEMLLQS 318 >gi|222100861|ref|YP_002535429.1| Flagellar biosynthesis protein FliP [Thermotoga neapolitana DSM 4359] gi|221573251|gb|ACM24063.1| Flagellar biosynthesis protein FliP [Thermotoga neapolitana DSM 4359] Length = 249 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 77/197 (39%), Positives = 121/197 (61%), Gaps = 7/197 (3%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +L++ T F R I+VFS+ R +G PPN V+I LALF+TF +M P + I Sbjct: 55 APSILVLFTSFTRIIVVFSLFRNALGTRQTPPNQVMIGLALFLTFLIMQPVWNDIYNNAI 114 Query: 112 QPLMNNQITETTAIQRVAEPFWVFM---RNNTREKDLSLFMDMAHSSHRNTDITKNDHIE 168 P + +I QR+ FM N +D + + + N +IT+ + Sbjct: 115 TPYLEREIGYQEMFQRINNRIREFMIKELKNHHNEDNVFML----AQNANLEITRVEEAP 170 Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 +LIP+F++ EL +F++G ++ +PF++IDMIVA+I+++MGM+M+PP +SLPFK++ F Sbjct: 171 NSVLIPAFVLGELEIAFKMGVVLYVPFIVIDMIVASILLSMGMIMIPPVFVSLPFKILIF 230 Query: 229 VLIDGWSLLVENLVKSF 245 V+ +GW LLVE L+KSF Sbjct: 231 VMANGWDLLVEGLIKSF 247 >gi|28898446|ref|NP_798051.1| type III secretion system protein [Vibrio parahaemolyticus RIMD 2210633] gi|91224470|ref|ZP_01259732.1| translocation protein in type III secretion [Vibrio alginolyticus 12G01] gi|153836136|ref|ZP_01988803.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio parahaemolyticus AQ3810] gi|254228243|ref|ZP_04921672.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio sp. Ex25] gi|260365110|ref|ZP_05777681.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio parahaemolyticus K5030] gi|260876607|ref|ZP_05888962.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio parahaemolyticus AN-5034] gi|260895032|ref|ZP_05903528.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio parahaemolyticus Peru-466] gi|260900957|ref|ZP_05909352.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio parahaemolyticus AQ4037] gi|262394133|ref|YP_003285987.1| yop virulence translocation protein R [Vibrio sp. Ex25] gi|269967239|ref|ZP_06181303.1| translocation protein in type III secretion [Vibrio alginolyticus 40B] gi|28806663|dbj|BAC59935.1| translocation protein in type III secretion [Vibrio parahaemolyticus RIMD 2210633] gi|91190812|gb|EAS77079.1| translocation protein in type III secretion [Vibrio alginolyticus 12G01] gi|149750411|gb|EDM61156.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio parahaemolyticus AQ3810] gi|151939316|gb|EDN58145.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio sp. Ex25] gi|262337727|gb|ACY51522.1| yop virulence translocation protein R [Vibrio sp. Ex25] gi|269828095|gb|EEZ82365.1| translocation protein in type III secretion [Vibrio alginolyticus 40B] gi|308085950|gb|EFO35645.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio parahaemolyticus Peru-466] gi|308093573|gb|EFO43268.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio parahaemolyticus AN-5034] gi|308110848|gb|EFO48388.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio parahaemolyticus AQ4037] gi|308111579|gb|EFO49119.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio parahaemolyticus K5030] gi|328468941|gb|EGF39901.1| type III secretion system protein YscR [Vibrio parahaemolyticus 10329] Length = 216 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 71/208 (34%), Positives = 125/208 (60%), Gaps = 2/208 (0%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + +L++ P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ ++M Sbjct: 8 LNLIVSLALLALIPFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIM 67 Query: 100 SPTLDRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +P + + Q + + + I+ +P+ F++ + RE + F D A + Sbjct: 68 APVGFETYDYVKQHDISLEDSASVEGLIESGLQPYREFLKKHIRETEAIFFTDAARTLWP 127 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + + + +L+P+F +SEL R+FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ P Sbjct: 128 QKYVDRLESDSLLLLLPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPM 187 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 +ISLPFK++ FVL+DGW+ L LV S+ Sbjct: 188 TISLPFKLLLFVLLDGWTKLTHGLVLSY 215 >gi|331671782|ref|ZP_08372578.1| flagellar biosynthetic protein FliP [Escherichia coli TA280] gi|331070771|gb|EGI42130.1| flagellar biosynthetic protein FliP [Escherichia coli TA280] Length = 250 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 83/214 (38%), Positives = 132/214 (61%), Gaps = 6/214 (2%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 + + ++ + T++ + P +++M+TCF RFIIV S+LR +G+ PPN ++I + Sbjct: 36 GNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGI 95 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 AL +T VM P + + P N+QIT T A+ A P FM T +K ++ M Sbjct: 96 ALSLTMLVMRPIWLNIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMT 155 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 + + D + I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMG Sbjct: 156 IGGAKGNAADQ------DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMG 209 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 MMML P +SLPFK++ FVLIDGWSL + L S Sbjct: 210 MMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243 >gi|239815267|ref|YP_002944177.1| flagellar biosynthetic protein FliP [Variovorax paradoxus S110] gi|239801844|gb|ACS18911.1| flagellar biosynthetic protein FliP [Variovorax paradoxus S110] Length = 326 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 91/206 (44%), Positives = 136/206 (66%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 +R T+L+I P LL+ +T F R I+V S+LR +GM PPN V+I LALF+T + M Sbjct: 124 LRVVLGLTVLAILPALLVCLTSFLRIIVVLSMLRHAIGMNETPPNTVLIGLALFLTLFTM 183 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 SP L + + +P M +++ + P FM TRE DL+L ++++ + Sbjct: 184 SPVLQKVNQDAFEPFMAGKLSMQDGYGKGIAPLREFMVRQTREADLALMVELSKAPTPK- 242 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + I LIPSFM+SELR +F+IGF+I LPFL+ID+IV++I+MA+GMMM+PPT+I Sbjct: 243 ---SMEDISNVQLIPSFMLSELRAAFQIGFVIFLPFLLIDLIVSSILMALGMMMMPPTTI 299 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 +LP K++ F+L+DGWSL+++ LV SF Sbjct: 300 ALPLKILMFILVDGWSLVLKALVGSF 325 >gi|157147125|ref|YP_001454444.1| flagellar biosynthesis protein FliP [Citrobacter koseri ATCC BAA-895] gi|157084330|gb|ABV14008.1| hypothetical protein CKO_02902 [Citrobacter koseri ATCC BAA-895] Length = 250 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 83/243 (34%), Positives = 128/243 (52%), Gaps = 6/243 (2%) Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61 I + P L + + T+L + PI+++M+TC Sbjct: 10 IALLLLGFLVAQPALAANGDITLFSTAANGAGQDYNVKIEILILMTLLGLLPIMVLMMTC 69 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F RFIIV +ILR +G+ PPN ++ +AL +T VM P I P ++IT Sbjct: 70 FTRFIIVLAILRQALGLQQSPPNKILTGIALALTLLVMRPVWTTIYTDAIDPFQKDEITL 129 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 A+ + P +M T K ++ M +A + + I+ P++++SEL Sbjct: 130 KQALAKAEVPLKNYMLAQTNNKAMAQMMSIAGIEGDAREQ------DLTIVTPAYLLSEL 183 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 + +F+IGF+I +PFL+ID+IVA+I+MAMGMMML P +SLPFK++ FVL DGW+L+V L Sbjct: 184 KTAFQIGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLIVGTL 243 Query: 242 VKS 244 S Sbjct: 244 ASS 246 >gi|301646791|ref|ZP_07246645.1| flagellar biosynthetic protein FliP [Escherichia coli MS 146-1] gi|307136838|ref|ZP_07496194.1| flagellar biosynthesis protein FliP [Escherichia coli H736] gi|331640694|ref|ZP_08341841.1| flagellar biosynthetic protein FliP [Escherichia coli H736] gi|301075026|gb|EFK89832.1| flagellar biosynthetic protein FliP [Escherichia coli MS 146-1] gi|315616847|gb|EFU97464.1| flagellar biosynthetic protein FliP [Escherichia coli 3431] gi|331040068|gb|EGI12276.1| flagellar biosynthetic protein FliP [Escherichia coli H736] Length = 250 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 83/214 (38%), Positives = 131/214 (61%), Gaps = 6/214 (2%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 + + ++ + T++ + P + +M+TCF RFIIV S+LR +G+ PPN ++I + Sbjct: 36 GNTQEYSVKIQVLILMTLVGLLPTMALMMTCFARFIIVLSLLRQALGLQQTPPNRILIGI 95 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 AL +T VM P + + P N+QIT T A+ A P FM T +K ++ M Sbjct: 96 ALSLTMLVMRPIWLNIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMT 155 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 + + D + I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMG Sbjct: 156 IGGAKGNAADQ------DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMG 209 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 MMML P +SLPFK++ FVLIDGWSL + L S Sbjct: 210 MMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243 >gi|269796382|ref|YP_003315837.1| flagellar biosynthetic protein FliP [Sanguibacter keddieii DSM 10542] gi|269098567|gb|ACZ23003.1| flagellar biosynthetic protein FliP [Sanguibacter keddieii DSM 10542] Length = 283 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 88/234 (37%), Positives = 142/234 (60%), Gaps = 4/234 (1%) Query: 12 VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71 + P A + +++ + + + T+LS+AP LL+M+T F + +V ++ Sbjct: 53 IAPVDPVAPAPGVVTVDLDGTTTAPSSSIVVLLGITLLSVAPSLLLMMTSFTKIFVVLAL 112 Query: 72 LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131 R +G+ VPPN V+ LALF++ ++M+P + + E+G+QP +N + A++ + P Sbjct: 113 TRNALGLQGVPPNQVLAGLALFLSLFIMAPIIGQVNELGVQPYVNGGLDFGAAVEAGSAP 172 Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191 FM TRE+D++L A + T + LIPSFM+SELR +F IGF+I Sbjct: 173 LREFMLGQTREEDIALMTRAADQPNP----TDPSTVPMLTLIPSFMLSELRAAFIIGFVI 228 Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PFL+ID++V+ +M+MGMMMLPP ISLPFK++ FVL+DGW ++V LV S+ Sbjct: 229 FIPFLVIDLVVSASLMSMGMMMLPPVMISLPFKILLFVLVDGWGMIVTALVGSY 282 >gi|218887305|ref|YP_002436626.1| flagellar biosynthesis protein FliP [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758259|gb|ACL09158.1| flagellar biosynthetic protein FliP [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 293 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 85/209 (40%), Positives = 135/209 (64%), Gaps = 4/209 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + ++ + T+LS+AP +++ VT F R IIVF +R +G+ +PP+ V+ SLA+FMT Sbjct: 87 SLLLEILFMLTVLSLAPAIMLTVTSFTRIIIVFHFIRQALGVQQLPPSQVLASLAIFMTV 146 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 +M P + + +QP + +I A+ + P FM +TREKDLS+F + Sbjct: 147 VIMMPVGKQINDTALQPYLEERIGFNEALDKAQVPLRSFMFKHTREKDLSIFYAITKMEQ 206 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 T + + +L +++ISEL+ F IGFLI +PFL++DM+V++I++AMGMMMLPP Sbjct: 207 PRT----KEEVPTVMLAAAYVISELKTGFTIGFLIYIPFLVLDMVVSSILLAMGMMMLPP 262 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +S+PFK++ FV++DGW+LLV +LV SF Sbjct: 263 MMVSMPFKLLLFVMVDGWALLVGSLVNSF 291 >gi|325519943|gb|EGC99198.1| type III secretion system protein YscR [Burkholderia sp. TJI49] Length = 224 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 71/211 (33%), Positives = 122/211 (57%), Gaps = 5/211 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V + L IAP +MVT + + ++V +LR+ +G+ VPPNLV+ +AL ++ ++M Sbjct: 8 VALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIM 67 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAI-----QRVAEPFWVFMRNNTREKDLSLFMDMAHS 154 +P + + +TA P F+ ++TR++D F+ A S Sbjct: 68 APVGMSIRDALQARHFDASGQLSTADVGALADAALPPIKDFLVSHTRQRDREFFVRTATS 127 Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214 + +L+PSF ++EL ++F+IGF+I + F+++D++VA I++A+GM M+ Sbjct: 128 VWPKNRADGIRDDDLLVLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANILLALGMQMI 187 Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 PT+IS+PFK++ FV +DGWSLLV LV S+ Sbjct: 188 SPTTISVPFKLLLFVALDGWSLLVHGLVLSY 218 >gi|269105051|ref|ZP_06157746.1| yop virulence translocation protein R [Photobacterium damselae subsp. damselae CIP 102761] gi|268160686|gb|EEZ39184.1| yop virulence translocation protein R [Photobacterium damselae subsp. damselae CIP 102761] Length = 216 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 71/208 (34%), Positives = 125/208 (60%), Gaps = 2/208 (0%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + +L++ P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ ++M Sbjct: 8 LNLIVTLALLALIPFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMAMYGLAIILSIFIM 67 Query: 100 SPTLDRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +P + + Q + + + I+ +P+ F++ + RE + F D A + Sbjct: 68 APVGFETYDYVTQHEISLEDSESIEGLIESGLQPYREFLKKHIRETESVFFTDAARTLWP 127 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + + + +L+P+F +SEL R+FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ P Sbjct: 128 QKYVDRLESDSLLLLLPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPM 187 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 +ISLPFK++ FVL+DGW+ L LV S+ Sbjct: 188 TISLPFKLLLFVLLDGWTKLTHGLVLSY 215 >gi|221209604|ref|ZP_03582585.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia multivorans CGD1] gi|221170292|gb|EEE02758.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia multivorans CGD1] Length = 224 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 71/211 (33%), Positives = 122/211 (57%), Gaps = 5/211 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V + L IAP +MVT + + ++V +LR+ +G+ VPPNLV+ +AL ++ ++M Sbjct: 8 VALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIM 67 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAI-----QRVAEPFWVFMRNNTREKDLSLFMDMAHS 154 +P + + +TA P F+ ++TR++D F+ A S Sbjct: 68 APVGMSIRDALQARHFDTSGQLSTADVGVLADAALPPIKDFLVSHTRQRDRDFFVRTATS 127 Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214 + +L+PSF ++EL ++F+IGF+I + F+++D++VA I++A+GM M+ Sbjct: 128 VWPKNRADAIRDDDLLVLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANILLALGMQMI 187 Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 PT+IS+PFK++ FV +DGWSLLV LV S+ Sbjct: 188 SPTTISVPFKLLLFVALDGWSLLVHGLVLSY 218 >gi|78485085|ref|YP_391010.1| flagellar biosynthesis protein FliP [Thiomicrospira crunogena XCL-2] gi|78363371|gb|ABB41336.1| flagellar biosynthetic protein FliP [Thiomicrospira crunogena XCL-2] Length = 252 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 144/246 (58%), Gaps = 7/246 (2%) Query: 3 RYCFFALFLVTPELVFAKSSLHDVMNIPADLSIS--TWIVRTFGIFTILSIAPILLIMVT 60 R F L+ P + F++ + T ++ + T L++ P LI +T Sbjct: 6 RSLFGIALLLFPIMAFSEPGIPAFTVETDAAGNQDYTLTIQILLLMTGLTLLPAALIAMT 65 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R ++V ++LR +G P N V+I LALF+T ++MSP LD+ + + P + QI Sbjct: 66 SFLRIVVVLALLRQALGTMQTPSNQVLIGLALFLTLFIMSPVLDKIYDTAVSPYLEEQIK 125 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 AI P FM TR DL +F +MA +T + + +++LIP++M SE Sbjct: 126 FKEAIDVAKTPIHQFMIQQTRADDLGMFAEMADI-----QLTDPESVPFKVLIPAYMTSE 180 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +F+IGF+I +PFLIID++VAT++M+MGMMML P ISLPFK++ FVLIDGW+L++ Sbjct: 181 LKTAFQIGFMIFIPFLIIDLVVATLLMSMGMMMLSPMIISLPFKIMLFVLIDGWALIMGT 240 Query: 241 LVKSFI 246 L SF+ Sbjct: 241 LANSFV 246 >gi|289548901|ref|YP_003473889.1| flagellar biosynthetic protein FliP [Thermocrinis albus DSM 14484] gi|289182518|gb|ADC89762.1| flagellar biosynthetic protein FliP [Thermocrinis albus DSM 14484] Length = 236 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 92/229 (40%), Positives = 146/229 (63%), Gaps = 6/229 (2%) Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 FA+ + + +R + T+LS+AP +LIM T F R +IV S+LR + Sbjct: 13 AFAQQGPG--IELKVSTGSWDNSIRILLLLTVLSLAPSILIMTTAFVRIVIVLSLLRQAI 70 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G+ +VPPN VI+SLA+F+TF+VM PT D+ + +QPL+N QIT+ ++R + FM Sbjct: 71 GVPTVPPNQVIVSLAMFLTFFVMKPTWDKINQQALQPLLNKQITDVEFLERTSSIMKEFM 130 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 NT+ + L F+ + + +LIP+FM+SE+ +F+I FL+ LPFL Sbjct: 131 LRNTKRETLQAFLKASTVQRGEEVR----DVPMHVLIPAFMVSEISVAFQIVFLLYLPFL 186 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 I+DM+VA+I+++MG++M+PP ISLPFK++ FVL +GW L++ +LV+S+ Sbjct: 187 IVDMVVASILISMGVLMVPPQIISLPFKLMLFVLANGWELVILSLVRSY 235 >gi|150020821|ref|YP_001306175.1| flagellar biosynthesis protein FliP [Thermosipho melanesiensis BI429] gi|149793342|gb|ABR30790.1| flagellar biosynthetic protein FliP [Thermosipho melanesiensis BI429] Length = 251 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 78/245 (31%), Positives = 131/245 (53%), Gaps = 1/245 (0%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 +I FL P+ + + + + T+LS+AP +LI+ T Sbjct: 5 LIISLLLVSFLSFPQEEIPLPGISLQITPNQQPRDLVNTLEILLLLTVLSLAPSILILFT 64 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R I+VFS +R +G PPN ++I LALF+TF++M P + I P +N++I Sbjct: 65 SFTRIIVVFSFVRNALGTRQTPPNQILIGLALFLTFFIMQPVWNDIYNNAITPYLNSEIG 124 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 R + FM + + + I + ILIP+F+I E Sbjct: 125 YEEMFSRSMDRLRTFMLTEIKIHHNED-NIYILAENVKKQIDNIEDTPNSILIPAFVIGE 183 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L F++G L+ +PF+++DM+VA+I++++GM+M+PP +SLPFK++ FVL++GW +L+ + Sbjct: 184 LEIGFKMGILLYIPFIVMDMVVASILLSLGMIMIPPVLVSLPFKILLFVLVNGWDILIGS 243 Query: 241 LVKSF 245 L+KSF Sbjct: 244 LIKSF 248 >gi|15639705|ref|NP_219155.1| flagellar biosynthesis protein FliP [Treponema pallidum subsp. pallidum str. Nichols] gi|189025943|ref|YP_001933715.1| flagellar biosynthesis protein FliP [Treponema pallidum subsp. pallidum SS14] gi|2494564|sp|P74930|FLIP_TREPA RecName: Full=Flagellar biosynthetic protein fliP gi|973197|gb|AAB00546.1| FliP [Treponema pallidum] gi|3323020|gb|AAC65684.1| flagellar biosynthetic protein (fliP) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018518|gb|ACD71136.1| flagellar biosynthetic protein [Treponema pallidum subsp. pallidum SS14] gi|291060082|gb|ADD72817.1| flagellar biosynthetic protein FliP [Treponema pallidum subsp. pallidum str. Chicago] Length = 271 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 76/217 (35%), Positives = 124/217 (57%), Gaps = 2/217 (0%) Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89 P + V+ + T++S+AP +L+++T F R IV ++ + + VPP V+ Sbjct: 57 PQTNREVAFSVQLLLLLTLISLAPSILLLMTAFLRLSIVLDFIKRALSLQQVPPTQVLHG 116 Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 +ALF+ ++M P +PL + Q+ TA P VFM S+ + Sbjct: 117 IALFLALFIMWPVFTEIYAKSFKPLTDGQVDIQTAYTEAERPLRVFMYRQMAHDPSSVRL 176 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 M+ + D + +LIP+F++ EL +F+IG + LPF+I+DM+VA+I+M+M Sbjct: 177 CMSMAKLPKPDTLA--DVPTYVLIPAFILHELTVAFQIGIFLYLPFIIVDMVVASILMSM 234 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 GM+MLPP ISLPFK++ FVL+DGW+LL++ L SF+ Sbjct: 235 GMIMLPPVQISLPFKLVLFVLVDGWNLLIDRLFHSFL 271 >gi|91795011|ref|YP_564662.1| flagellar biosynthesis protein FliP [Shewanella denitrificans OS217] gi|91717013|gb|ABE56939.1| flagellar biosynthetic protein FliP [Shewanella denitrificans OS217] Length = 243 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 88/245 (35%), Positives = 138/245 (56%), Gaps = 4/245 (1%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 M+R L++P+ + A ++ + + + T LS P +L+M+T Sbjct: 2 MLRAFILGWLLLSPQALGADGFTLLTLDSGQESQAVNIKLEILALMTALSFLPAMLMMLT 61 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R ++V +ILR +G+ PPN V+I +AL +T ++M P D + P +I Sbjct: 62 SFTRIVVVLAILRQALGLQQSPPNKVLIGIALVLTLFIMRPVGDSIYKEAYLPYDQGKIE 121 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 AI P FM TRE DL + +A+ T I + +L+P+F++SE Sbjct: 122 LMAAIDIAKVPLSQFMLAQTRETDLEQMLKIANEPIDLTPA----EIPFLVLMPAFVLSE 177 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +F+IGFL+ LPFL+ID++VA+++M+MGMMML P ISLPFK++ FVL+DGW++ V Sbjct: 178 LKTAFQIGFLLFLPFLVIDLVVASVLMSMGMMMLSPLIISLPFKLMIFVLVDGWAMTVST 237 Query: 241 LVKSF 245 L SF Sbjct: 238 LTASF 242 >gi|167590548|ref|ZP_02382936.1| Yop virulence translocation R [Burkholderia ubonensis Bu] Length = 222 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 70/211 (33%), Positives = 123/211 (58%), Gaps = 5/211 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V + L IAP +MVT + + ++V +LR+ +G+ VPPNLV+ +AL ++ ++M Sbjct: 8 VALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIM 67 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAI-----QRVAEPFWVFMRNNTREKDLSLFMDMAHS 154 +P + Q + +TA P F+ ++TR++D F+ A S Sbjct: 68 APVGMSIRDALQQRHFDASGQLSTADVGALADAALPPIKDFLVSHTRQRDREFFVRTATS 127 Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214 + +L+PSF ++EL ++F+IGF+I + F+++D++VA I++A+GM M+ Sbjct: 128 VWPKNRAEGVKDDDLLVLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANILLALGMQMI 187 Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 PT+IS+PFK++ FV +DGW++LV LV S+ Sbjct: 188 SPTTISVPFKLLLFVALDGWAMLVHGLVLSY 218 >gi|134294005|ref|YP_001117741.1| type III secretion system protein [Burkholderia vietnamiensis G4] gi|134137162|gb|ABO58276.1| Yop virulence translocation R [Burkholderia vietnamiensis G4] Length = 224 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 71/211 (33%), Positives = 122/211 (57%), Gaps = 5/211 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V + L IAP +MVT + + ++V +LR+ +G+ VPPNLV+ +AL ++ ++M Sbjct: 8 VALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIM 67 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAI-----QRVAEPFWVFMRNNTREKDLSLFMDMAHS 154 +P + + +TA P F+ ++TR++D F+ A S Sbjct: 68 APVGMSIRDALQARHFDAAGQLSTADIGVLADAALPPIKDFLVSHTRQRDREFFVRTATS 127 Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214 + +L+PSF ++EL ++F+IGF+I + F+++D++VA I++A+GM M+ Sbjct: 128 VWPKNRADGIKDDDLLVLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANILLALGMQMI 187 Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 PT+IS+PFK++ FV +DGWSLLV LV S+ Sbjct: 188 SPTTISVPFKLLLFVALDGWSLLVHGLVLSY 218 >gi|107025882|ref|YP_623393.1| type III secretion system protein [Burkholderia cenocepacia AU 1054] gi|116692934|ref|YP_838467.1| type III secretion system protein [Burkholderia cenocepacia HI2424] gi|170737801|ref|YP_001779061.1| Yop virulence translocation R [Burkholderia cenocepacia MC0-3] gi|206563883|ref|YP_002234646.1| type III secretion system protein [Burkholderia cenocepacia J2315] gi|254250206|ref|ZP_04943526.1| Yop virulence translocation protein R [Burkholderia cenocepacia PC184] gi|18092662|gb|AAK50140.1| BcscR [Burkholderia cenocepacia] gi|105895256|gb|ABF78420.1| Yop virulence translocation R [Burkholderia cenocepacia AU 1054] gi|116650934|gb|ABK11574.1| Yop virulence translocation R [Burkholderia cenocepacia HI2424] gi|124876707|gb|EAY66697.1| Yop virulence translocation protein R [Burkholderia cenocepacia PC184] gi|169819989|gb|ACA94571.1| Yop virulence translocation R [Burkholderia cenocepacia MC0-3] gi|198039923|emb|CAR55900.1| type III secretion system protein [Burkholderia cenocepacia J2315] Length = 224 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 70/211 (33%), Positives = 122/211 (57%), Gaps = 5/211 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V + L IAP +MVT + + ++V +LR+ +G+ VPPNLV+ +AL ++ ++M Sbjct: 8 VALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIM 67 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAI-----QRVAEPFWVFMRNNTREKDLSLFMDMAHS 154 +P + + +T+ P F+ ++TR++D F+ A S Sbjct: 68 APVGMSIRDALQARHFDASGQLSTSDIGALADAALPPIKDFLVSHTRQRDREFFVRTATS 127 Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214 + +L+PSF ++EL ++F+IGF+I + F+++D++VA I++A+GM M+ Sbjct: 128 VWPKNRADGIKDDDLLVLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANILLALGMQMI 187 Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 PT+IS+PFK++ FV +DGWSLLV LV S+ Sbjct: 188 SPTTISVPFKLLLFVALDGWSLLVHGLVLSY 218 >gi|38639349|gb|AAR25815.1| BcscR [Burkholderia multivorans E243] Length = 224 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 71/211 (33%), Positives = 122/211 (57%), Gaps = 5/211 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V + L IAP +MVT + + ++V +LR+ +G+ VPPNLV+ +AL ++ ++M Sbjct: 8 VALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIM 67 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAI-----QRVAEPFWVFMRNNTREKDLSLFMDMAHS 154 +P + + +TA P F+ ++TR++D F+ A S Sbjct: 68 APVGMSIRDALQARHFDTSGQLSTADVGVLADAALPPIKDFLVSHTRQRDRDFFVRTATS 127 Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214 + +L+PSF ++EL ++F+IGF+I + F+++D++V I++A+GM M+ Sbjct: 128 VWPKNRADAIRDHDLLVLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVPNILLALGMQMI 187 Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 PT+IS+PFK++ FVL+DGWSLLV LV S+ Sbjct: 188 SPTTISVPFKLLLFVLLDGWSLLVHGLVLSY 218 >gi|115379117|ref|ZP_01466241.1| type III secretion apparatus protein, YscR/HrcR family [Stigmatella aurantiaca DW4/3-1] gi|115363900|gb|EAU63011.1| type III secretion apparatus protein, YscR/HrcR family [Stigmatella aurantiaca DW4/3-1] Length = 241 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 72/247 (29%), Positives = 139/247 (56%), Gaps = 9/247 (3%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 M R+C A++++ +L + + +LS+ P ++M+T Sbjct: 1 MTRFCLAAVWVLPGWAAAGGETLAQASQAGNP-------LTMMAVLAVLSLLPFAVVMLT 53 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F + +V S+ R+ MG PP +V+ LA ++ ++MSP + R E+G + + + Sbjct: 54 SFSKIAVVLSLARSAMGTQQAPPTVVLTGLAAVLSAHIMSPVMARMYEVGREAARDAESG 113 Query: 121 ET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 A++R AEP F+ + ++ S F+++A + T+ + +++P+F+I Sbjct: 114 AQILAAVERTAEPLRAFLVKHGSAEERSRFVELARELRPPEEATQVQEGDLFVVVPAFVI 173 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 +EL+ +F++GFL+ LPFL++DM++A I++A+GM L P+ +SLPFK++ FV +DGW LL Sbjct: 174 TELKEAFQMGFLLFLPFLVLDMVIANILLALGMQSLSPSQVSLPFKILLFVTVDGWPLLA 233 Query: 239 ENLVKSF 245 + L++ + Sbjct: 234 QGLIQGY 240 >gi|115358964|ref|YP_776102.1| type III secretion system protein [Burkholderia ambifaria AMMD] gi|170704157|ref|ZP_02894758.1| Yop virulence translocation R [Burkholderia ambifaria IOP40-10] gi|171323089|ref|ZP_02911721.1| Yop virulence translocation R [Burkholderia ambifaria MEX-5] gi|172063756|ref|YP_001811407.1| Yop virulence translocation R [Burkholderia ambifaria MC40-6] gi|115284252|gb|ABI89768.1| Yop virulence translocation R [Burkholderia ambifaria AMMD] gi|170130935|gb|EDS99661.1| Yop virulence translocation R [Burkholderia ambifaria IOP40-10] gi|171091518|gb|EDT37148.1| Yop virulence translocation R [Burkholderia ambifaria MEX-5] gi|171996273|gb|ACB67191.1| Yop virulence translocation R [Burkholderia ambifaria MC40-6] Length = 224 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 70/211 (33%), Positives = 122/211 (57%), Gaps = 5/211 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V + L IAP +MVT + + ++V +LR+ +G+ VPPNLV+ +AL ++ ++M Sbjct: 8 VALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIM 67 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAI-----QRVAEPFWVFMRNNTREKDLSLFMDMAHS 154 +P + + +T+ P F+ ++TR++D F+ A S Sbjct: 68 APVGMSIRDALQSRHFDASGQLSTSDIGVLADAALPPIKDFLVSHTRQRDREFFVRTATS 127 Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214 + +L+PSF ++EL ++F+IGF+I + F+++D++VA I++A+GM M+ Sbjct: 128 VWPKNRADGIKDDDLLVLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANILLALGMQMI 187 Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 PT+IS+PFK++ FV +DGWSLLV LV S+ Sbjct: 188 SPTTISVPFKLLLFVALDGWSLLVHGLVLSY 218 >gi|58579704|ref|YP_198720.1| type III secretion system protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58424298|gb|AAW73335.1| hrpD2 [Xanthomonas oryzae pv. oryzae KACC10331] Length = 226 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 66/206 (32%), Positives = 115/206 (55%), Gaps = 3/206 (1%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 + +L + P ++VT + + ++V +LR +G+ VPPN+V+ +AL ++ +VM+P Sbjct: 21 LLLVVIMLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAP 80 Query: 102 TLDRSIEMGIQPLMNNQITETTA--IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 + + Q + EPF F+ +T E++ + FM A Sbjct: 81 VGMEAFKAA-QNYGAGSDNSRIVVLLDACREPFRQFLLKHTPEREKAFFMRSAQQIWPKD 139 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 T + IL P+F +SEL +F IGFL+ L F++ID++VA +MAMG+ + PT++ Sbjct: 140 KATTLKSDDLLILAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNV 199 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 ++PFK++ FV +DGWS+L+ LV S+ Sbjct: 200 AIPFKLLLFVAMDGWSMLIHGLVLSY 225 >gi|163738043|ref|ZP_02145459.1| flagellar biosynthetic protein FliP [Phaeobacter gallaeciensis BS107] gi|163742561|ref|ZP_02149947.1| flagellar biosynthetic protein FliP [Phaeobacter gallaeciensis 2.10] gi|161384146|gb|EDQ08529.1| flagellar biosynthetic protein FliP [Phaeobacter gallaeciensis 2.10] gi|161388659|gb|EDQ13012.1| flagellar biosynthetic protein FliP [Phaeobacter gallaeciensis BS107] Length = 247 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 94/225 (41%), Positives = 141/225 (62%), Gaps = 3/225 (1%) Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80 S+ +++ SIS ++ + T+LS+AP LLIM+TCFP + V SILR +G+ Sbjct: 24 SAQDLSLSLGDGQSISARSIQLILLITVLSLAPGLLIMITCFPFLVTVLSILRQAIGLQQ 83 Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140 PPN+++ISLALF+T++VM P + GI PL+ Q+ T ++R +PF VFM Sbjct: 84 APPNMLMISLALFLTYFVMEPVFTEAWTTGINPLIEEQLDVETGLERALQPFRVFMAARL 143 Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200 D F +A I L+ SFM+SE+ R+F++GFL+ LPFL+ID+ Sbjct: 144 ---DPDTFYAIADLRPSTAGIDPTADAPLSTLVSSFMLSEIARAFQVGFLVFLPFLVIDL 200 Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +VA ++M+MGMMM+PP +S+PFK+ FFV+ DGWSL+ LV+S+ Sbjct: 201 VVAAVLMSMGMMMVPPAVVSMPFKLAFFVVADGWSLIASALVRSY 245 >gi|148269377|ref|YP_001243837.1| flagellar biosynthesis protein FliP [Thermotoga petrophila RKU-1] gi|170288035|ref|YP_001738273.1| flagellar biosynthetic protein FliP [Thermotoga sp. RQ2] gi|281411926|ref|YP_003346005.1| flagellar biosynthetic protein FliP [Thermotoga naphthophila RKU-10] gi|147734921|gb|ABQ46261.1| flagellar biosynthetic protein FliP [Thermotoga petrophila RKU-1] gi|170175538|gb|ACB08590.1| flagellar biosynthetic protein FliP [Thermotoga sp. RQ2] gi|281373029|gb|ADA66591.1| flagellar biosynthetic protein FliP [Thermotoga naphthophila RKU-10] Length = 249 Score = 181 bits (460), Expect = 6e-44, Method: Composition-based stats. Identities = 78/196 (39%), Positives = 119/196 (60%), Gaps = 7/196 (3%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +L++ T F R I+VFS+ R +G PPN V+I LALF+TF +M P + I Sbjct: 56 PSILVLFTSFTRIIVVFSLFRNALGTRQTPPNQVMIGLALFLTFLIMQPVWNDIYNNAIT 115 Query: 113 PLMNNQITETTAIQRVAEPFWVFM---RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169 P +N +I QRV FM N +D + + + +I K + Sbjct: 116 PYLNKEIGYQEMFQRVNTRIREFMINELKNHHNEDNVFML----AKNSGIEIAKIEEAPN 171 Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229 +LIP+F++ EL +F++G ++ +PF++IDMIVA+I++AMGM+M+PP +SLPFK++ FV Sbjct: 172 AVLIPAFVLGELEVAFKMGVVLYVPFIVIDMIVASILLAMGMIMIPPVFVSLPFKILIFV 231 Query: 230 LIDGWSLLVENLVKSF 245 + +GW LLVE L+KSF Sbjct: 232 MANGWDLLVEGLIKSF 247 >gi|261341515|ref|ZP_05969373.1| flagellar biosynthetic protein FliP [Enterobacter cancerogenus ATCC 35316] gi|288316313|gb|EFC55251.1| flagellar biosynthetic protein FliP [Enterobacter cancerogenus ATCC 35316] Length = 250 Score = 181 bits (460), Expect = 7e-44, Method: Composition-based stats. Identities = 87/242 (35%), Positives = 137/242 (56%), Gaps = 7/242 (2%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI-VRTFGIFTILSIAPILLIMVTCF 62 + LV+P+L+ A + + + + + T+L + P++L+M+TCF Sbjct: 11 WLLLGGLLVSPQLLAANGDITLFSSSTTAGGQDYNVKIEILILMTLLGLLPVMLMMMTCF 70 Query: 63 PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122 RFIIV +ILR +G+ PPN ++ +AL +T VM P + I P N++IT Sbjct: 71 TRFIIVLAILRQALGLQQSPPNKILTGIALALTLLVMRPVWTTIYQDAIVPFQNDEITMK 130 Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182 A + P FM T K +S M +A + + ++ P++++SEL+ Sbjct: 131 QAFGKAEAPLKNFMLAQTSNKAMSQMMTIAGVTG------DPKEQDLTVVTPAYLLSELK 184 Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242 +F+IGF+I +PFL+ID+IVA+I+MAMGMMML P +SLPFK++ FVL DGW+L+V L Sbjct: 185 TAFQIGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLIVGTLT 244 Query: 243 KS 244 S Sbjct: 245 SS 246 >gi|30524904|gb|AAP34349.1|AF499777_17 HrcR [Xanthomonas axonopodis pv. glycines] Length = 200 Score = 181 bits (460), Expect = 7e-44, Method: Composition-based stats. Identities = 65/200 (32%), Positives = 114/200 (57%), Gaps = 3/200 (1%) Query: 48 ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107 +L + P ++VT + + ++V +LR +G+ VPPN+V+ +AL ++ +VM+P + Sbjct: 1 MLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF 60 Query: 108 EMGIQPLMNNQITETTA--IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165 + Q + EPF F+ +TRE++ + FM A Sbjct: 61 KAA-QNYGAGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLK 119 Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225 + +L P+F +SEL +F IGFL+ L F++ID++VA +MAMG+ + PT++++PFK+ Sbjct: 120 SDDLLVLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKL 179 Query: 226 IFFVLIDGWSLLVENLVKSF 245 + FV +DGWS+L+ LV S+ Sbjct: 180 LLFVAMDGWSMLIHGLVLSY 199 >gi|238752883|ref|ZP_04614348.1| Lateral flagellar export/assembly protein (FliP-like) [Yersinia rohdei ATCC 43380] gi|238708922|gb|EEQ01175.1| Lateral flagellar export/assembly protein (FliP-like) [Yersinia rohdei ATCC 43380] Length = 248 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 89/241 (36%), Positives = 141/241 (58%), Gaps = 7/241 (2%) Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI-VRTFGIFTILSIAPILLIMVTCFP 63 F + L +P L+ + + +P + + + T+L + PI+++M+TCF Sbjct: 10 LFISGLLYSPLLLAQEGGITLFSTVPTAAGKDFNVKIEILILMTLLGLLPIMMLMMTCFT 69 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 RFIIV +ILR +G+ PPN V+ +AL +T VM P + E + P N++IT Sbjct: 70 RFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKIHEDAVIPFQNDEITLPQ 129 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 A++R P +M T K L MD+A + + + ++ P++++SEL+ Sbjct: 130 ALRRAEIPLKNYMLAQTSTKSLEQMMDIAQVTG------EPQQQDLTVVTPAYVLSELKT 183 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 +F+IGF+I +PFL+ID+IVA+I+MAMGMMML P +SLPFK++ FVL DGW+L+V L Sbjct: 184 AFQIGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLIVGTLTA 243 Query: 244 S 244 S Sbjct: 244 S 244 >gi|323972752|gb|EGB67952.1| flagellar biosynthetic protein FliP [Escherichia coli TA007] Length = 221 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 72/198 (36%), Positives = 113/198 (57%), Gaps = 9/198 (4%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 ++ L+L+TP L FA+ L + + P +W V+T T L+ P +L+M Sbjct: 4 LLSVAPVLLWLITP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP + Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ A+++ A+P FM TRE DL LF +A++ + + + RIL+P+++ Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVT 176 Query: 179 SELRRSFEIGFLIILPFL 196 SEL+ +F+IGF I PF Sbjct: 177 SELKTAFQIGFTIFHPFF 194 >gi|269963170|ref|ZP_06177505.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832134|gb|EEZ86258.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 216 Score = 181 bits (459), Expect = 9e-44, Method: Composition-based stats. Identities = 71/208 (34%), Positives = 125/208 (60%), Gaps = 2/208 (0%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + +L++ P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ ++M Sbjct: 8 LNLIVTLALLALIPFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIM 67 Query: 100 SPTLDRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +P + + Q + + + I+ +P+ F++ + RE + F D A + Sbjct: 68 APVGFETYDYVTQHEISLEDSESIEGLIESGLQPYREFLKTHIRETESVFFTDAARTLWP 127 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + + + +L+P+F +SEL R+FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ P Sbjct: 128 QKYVDRLESDSLLLLLPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPM 187 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 +ISLPFK++ FVL+DGW+ L LV S+ Sbjct: 188 TISLPFKLLLFVLLDGWTKLTHGLVLSY 215 >gi|85710189|ref|ZP_01041254.1| Flagellar transport protein FliP [Erythrobacter sp. NAP1] gi|85688899|gb|EAQ28903.1| Flagellar transport protein FliP [Erythrobacter sp. NAP1] Length = 243 Score = 181 bits (459), Expect = 9e-44, Method: Composition-based stats. Identities = 90/218 (41%), Positives = 141/218 (64%), Gaps = 4/218 (1%) Query: 28 NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87 + + + ++ ++ + ++L+I P +++M+T F R +IV SILR +G+ PP V+ Sbjct: 29 DGTGEDTPLSFSIQLLLVISLLTILPAIVLMMTSFLRILIVLSILRQALGLQGSPPTQVL 88 Query: 88 ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147 + L+LF++ +VM+PTLD E+ I+P I AI E F FM TRE +L + Sbjct: 89 VGLSLFLSLFVMAPTLDTVSELAIEPYSAGTIGADAAIASAGEAFHTFMLRQTREANLVM 148 Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 F D+A D I + IL+P+F+ SEL +F+IGF++ LPFL+ID++VA+++M Sbjct: 149 FADIAGIG----AFADADAIPFSILLPAFVTSELETAFQIGFMLFLPFLVIDLVVASVLM 204 Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++GMMML PT ISLPFK++ FVL+DGWSLL+ +L SF Sbjct: 205 SLGMMMLSPTIISLPFKLLLFVLVDGWSLLMGSLAMSF 242 >gi|322432985|ref|YP_004210234.1| flagellar biosynthetic protein FliP [Acidobacterium sp. MP5ACTX9] gi|321165212|gb|ADW70916.1| flagellar biosynthetic protein FliP [Acidobacterium sp. MP5ACTX9] Length = 236 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 80/240 (33%), Positives = 140/240 (58%), Gaps = 6/240 (2%) Query: 6 FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65 AL V A ++ + + + + W + + T LS+ P LL+ +T F R Sbjct: 2 IAALGSVFLHAPGATANANGLQITGLGGASAPWTI--VVLLTFLSLIPSLLLCITPFARL 59 Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 +IVF LR +G+ + P N +I L++ MTF++M P + + PL IT A+ Sbjct: 60 LIVFHFLRQALGLQTTPSNQTLIGLSMIMTFFLMQPVGAVIYDTAVTPLQAGTITPLQAL 119 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185 +R P FM + R+KD++LF+++A + + +R+++P++++SEL+ F Sbjct: 120 ERAGTPMRQFMAHYVRDKDVALFLELAKEPRPH----NVQDLSFRVMLPAYILSELKAGF 175 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +IG ++ LPFL++DM+VA+I ++GMM LPP IS P K++ F+++DGW LL+ +L++SF Sbjct: 176 QIGTVLFLPFLVVDMVVASITTSVGMMQLPPVVISTPLKLLLFLMVDGWHLLISSLMRSF 235 >gi|320175462|gb|EFW50561.1| Flagellar biosynthesis protein FliP [Shigella dysenteriae CDC 74-1112] Length = 220 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 132/247 (53%), Gaps = 31/247 (12%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 M R A L+ A + L + + P +W V+T T L+ P +L+M Sbjct: 1 MRRLLSAAPVLLWLVTPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP + Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ A+++ A+P FM TRE DL LF +A++ + + + RIL+P+++ Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVT 176 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL MA+GMMM+PP +I+LPFK++ FVL+DGW LLV Sbjct: 177 SEL-------------------------MALGMMMVPPATIALPFKLMLFVLVDGWQLLV 211 Query: 239 ENLVKSF 245 +L +SF Sbjct: 212 GSLAQSF 218 >gi|254254345|ref|ZP_04947662.1| Type III secretory pathway component EscR [Burkholderia dolosa AUO158] gi|124898990|gb|EAY70833.1| Type III secretory pathway component EscR [Burkholderia dolosa AUO158] Length = 224 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 72/211 (34%), Positives = 122/211 (57%), Gaps = 5/211 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V + L IAP +MVT + + ++V +LR+ +G+ VPPNLV+ +AL ++ ++M Sbjct: 8 VALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIM 67 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAI-----QRVAEPFWVFMRNNTREKDLSLFMDMAHS 154 +P + + +TA P F+ ++TR++D F+ A S Sbjct: 68 APVGMSIRDALQARHFDASGQLSTADVGALADAALPPIKEFLVSHTRQRDREFFVRTATS 127 Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214 N + +L+PSF ++EL ++F IGF+I + F+++D++VA I++A+GM M+ Sbjct: 128 VWPNNRADAIKDDDLLVLVPSFTLAELTKAFHIGFVIYIVFIVVDLLVANILLALGMQMI 187 Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 PT+IS+PFK++ FV +DGWSLLV LV S+ Sbjct: 188 APTTISVPFKLLLFVALDGWSLLVHGLVLSY 218 >gi|182412233|ref|YP_001817299.1| flagellar biosynthetic protein FliP [Opitutus terrae PB90-1] gi|177839447|gb|ACB73699.1| flagellar biosynthetic protein FliP [Opitutus terrae PB90-1] Length = 302 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 87/224 (38%), Positives = 142/224 (63%), Gaps = 5/224 (2%) Query: 23 LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82 L + + V+ + T+LS+AP +++++T F R +IV +RT +G S P Sbjct: 83 LSIGLEGTNQQGQVSVAVQIVLVMTLLSVAPSIVLLMTTFTRLVIVLGFVRTALGTPSAP 142 Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142 N ++I LALF+TF++M P DR + ++P ++ QIT T A+ P FM TR Sbjct: 143 SNQIVIGLALFLTFFLMGPVFDRVNQEALRPYLDGQITATQALDHATVPLKEFMLKQTRT 202 Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202 +D+ F+ + T + R++IP+F+ISEL+ +F++GFL+ LPFL+ID +V Sbjct: 203 RDIEYFLQLGGFGP-----TAVKDLPIRVVIPAFVISELQTAFQMGFLLFLPFLVIDFLV 257 Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 A+++MAMGMMM+PP +++LP K++ FVL+DGW L+V +LV+SF+ Sbjct: 258 ASVLMAMGMMMMPPVTVALPLKLLLFVLVDGWHLVVRSLVQSFV 301 >gi|15643461|ref|NP_228507.1| flagellar biosynthesis protein FliP [Thermotoga maritima MSB8] gi|4981221|gb|AAD35780.1|AE001741_13 flagellar biosynthesis protein FliP [Thermotoga maritima MSB8] Length = 249 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 77/196 (39%), Positives = 118/196 (60%), Gaps = 7/196 (3%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +L++ T F R I+VFS+ R +G PPN V+I LALF+TF +M P + I Sbjct: 56 PSILVLFTSFTRIIVVFSLFRNALGTRQTPPNQVMIGLALFLTFLIMQPVWNDIYNNAIT 115 Query: 113 PLMNNQITETTAIQRVAEPFWVFM---RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169 P +N + QRV FM N +D + + + +I K + Sbjct: 116 PYLNKETGYQEMFQRVNTRIREFMINELKNHHNEDNVFML----AKNSGIEIAKIEEAPN 171 Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229 +LIP+F++ EL +F++G ++ +PF++IDMIVA+I++AMGM+M+PP +SLPFK++ FV Sbjct: 172 AVLIPAFVLGELEVAFKMGVVLYVPFIVIDMIVASILLAMGMIMIPPVFVSLPFKILIFV 231 Query: 230 LIDGWSLLVENLVKSF 245 + +GW LLVE L+KSF Sbjct: 232 MANGWDLLVEGLIKSF 247 >gi|332298229|ref|YP_004440151.1| flagellar biosynthetic protein FliP [Treponema brennaborense DSM 12168] gi|332181332|gb|AEE17020.1| flagellar biosynthetic protein FliP [Treponema brennaborense DSM 12168] Length = 277 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 80/220 (36%), Positives = 127/220 (57%), Gaps = 6/220 (2%) Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88 P + V+ + TIL++AP +LI++TCF RF IV ++ + + VPP V+ Sbjct: 61 SPQTGQEVAFSVQLLLLLTILTLAPSILILLTCFLRFSIVLDFIKRALSLQQVPPTAVLN 120 Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN--TREKDLS 146 +A FMT ++M PT + +PL + +I A P +FM T ++ Sbjct: 121 GIAFFMTLFIMWPTFTDIYDNSFKPLSDGEIGIEAAFTEAEAPLRIFMFKQMGTNTDYIT 180 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 LFM M T + +LIP+++++EL +F+IG L+ +PF++IDM+VA+++ Sbjct: 181 LFMSMGGLDRPQTLA----DVPSHVLIPAYILNELTVAFKIGVLLYIPFIVIDMVVASVL 236 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 M+MGM+MLPP IS+PFK++ FVLIDGW LL + L S + Sbjct: 237 MSMGMIMLPPVQISMPFKLMLFVLIDGWGLLTQQLFNSIV 276 >gi|289663757|ref|ZP_06485338.1| type III secretion system protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289668179|ref|ZP_06489254.1| type III secretion system protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 214 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 63/194 (32%), Positives = 111/194 (57%), Gaps = 1/194 (0%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P ++VT + + +V +LR +G+ VPPN+V+ +AL ++ +VM+P + + Sbjct: 20 PFAAMVVTSYTKIAVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAFKAAQN 79 Query: 113 PLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 ++ + EPF F+ +TRE++ + FM A + + Sbjct: 80 YGAGSENNRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKADALKSDDLLV 139 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231 L P+F +SEL +F IGFL+ L F++ID++VA +MAMG+ + PT++++PFK++ FV + Sbjct: 140 LAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVAM 199 Query: 232 DGWSLLVENLVKSF 245 DGWS+L+ LV S+ Sbjct: 200 DGWSMLIHGLVLSY 213 >gi|308050042|ref|YP_003913608.1| flagellar biosynthetic protein FliP [Ferrimonas balearica DSM 9799] gi|307632232|gb|ADN76534.1| flagellar biosynthetic protein FliP [Ferrimonas balearica DSM 9799] Length = 243 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 81/206 (39%), Positives = 127/206 (61%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + + T LS P +L+M+T F R I+V ++LR +G+ PPN ++I +AL +T ++M Sbjct: 39 MEILALMTALSFLPAMLLMMTSFTRIIVVLAVLRQALGLQQSPPNKLLIGIALVLTLFIM 98 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 P E P N ++T A+ P FM TRE DL + +A S + Sbjct: 99 RPVWTEIHEQAFLPYDNGELTLKQAVAVAEVPLRTFMLGQTRETDLEQMLKIAGESTQ-- 156 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + +L+P+F++SEL+ +F+IGFL+ +PFL+ID++VA+++M+MGMMML P I Sbjct: 157 --LSAEEVPFSVLMPAFVLSELKTAFQIGFLLFIPFLVIDLVVASVLMSMGMMMLSPLII 214 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FVL+DGWS+ V L SF Sbjct: 215 SLPFKLMVFVLVDGWSMTVGTLAASF 240 >gi|21230683|ref|NP_636600.1| type III secretion system protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769322|ref|YP_244084.1| type III secretion system protein [Xanthomonas campestris pv. campestris str. 8004] gi|188992474|ref|YP_001904484.1| type III secretion system protein [Xanthomonas campestris pv. campestris str. B100] gi|325921929|ref|ZP_08183740.1| HrcR [Xanthomonas gardneri ATCC 19865] gi|21112271|gb|AAM40524.1| HrcR protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574654|gb|AAY50064.1| HrcR protein [Xanthomonas campestris pv. campestris str. 8004] gi|167734234|emb|CAP52442.1| HrcR protein [Xanthomonas campestris pv. campestris] gi|325547631|gb|EGD18674.1| HrcR [Xanthomonas gardneri ATCC 19865] Length = 214 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 115/205 (56%), Gaps = 1/205 (0%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 + +L + P ++VT + + ++V +LR +G+ VPPN+V+ +AL ++ +VM+P Sbjct: 9 LLLVVIMLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAP 68 Query: 102 TLDRSIEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD 160 + + + + EPF F+ +TRE++ + F+ A Sbjct: 69 VGMEAFKAAQNYSPGADNSRVVVLLDACREPFRQFLLKHTREREKAFFIRSAQQIWPKDK 128 Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220 + +L P+F +SEL +F IGFL+ L F++ID++VA +MAMG+ + PT+++ Sbjct: 129 ADTLKPDDLLVLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVA 188 Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245 +PFK++ FV +DGWS+L+ LV S+ Sbjct: 189 IPFKLLLFVALDGWSMLIHGLVLSY 213 >gi|21241175|ref|NP_640757.1| type III secretion system protein [Xanthomonas axonopodis pv. citri str. 306] gi|78045978|ref|YP_362153.1| type III secretion system protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325927673|ref|ZP_08188901.1| HrcR protein [Xanthomonas perforans 91-118] gi|4494848|gb|AAD21321.1| HrcR [Xanthomonas euvesicatoria] gi|21106482|gb|AAM35293.1| HrcR protein [Xanthomonas axonopodis pv. citri str. 306] gi|78034408|emb|CAJ22053.1| HrcR protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325541874|gb|EGD13388.1| HrcR protein [Xanthomonas perforans 91-118] Length = 214 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 115/206 (55%), Gaps = 3/206 (1%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 + +L + P ++VT + + ++V +LR +G+ VPPN+V+ +AL ++ +VM+P Sbjct: 9 LLLVVIMLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAP 68 Query: 102 TLDRSIEMGIQPLMNNQITETTA--IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 + + Q + EPF F+ +TRE++ + FM A Sbjct: 69 VGMEAFKAA-QNYGAGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKD 127 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + +L P+F +SEL +F IGFL+ L F++ID++VA +MAMG+ + PT++ Sbjct: 128 KAATLKSDDLLVLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNV 187 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 ++PFK++ FV +DGWS+L+ LV S+ Sbjct: 188 AIPFKLLLFVAMDGWSMLIHGLVLSY 213 >gi|166714030|ref|ZP_02245237.1| type III secretion system protein [Xanthomonas oryzae pv. oryzicola BLS256] gi|111146915|gb|ABH07400.1| HrcR [Xanthomonas oryzae pv. oryzicola] Length = 214 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 116/205 (56%), Gaps = 1/205 (0%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 + +L + P ++VT + + ++V +LR +G+ VPPN+V+ +AL ++ +VM+P Sbjct: 9 LLLVVIMLGLLPFAALVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAP 68 Query: 102 TLDRSIEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD 160 + + + + + EPF F+ +TRE++ + FM A Sbjct: 69 VGMEAFKAAQNYGAGSDNSRIVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDK 128 Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220 + IL P+F +SEL +F IGFL+ L F++ID++VA +MAMG+ + PT+++ Sbjct: 129 AATLKSDDLLILAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVA 188 Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245 +PFK++ FV +DGWS+L+ LV S+ Sbjct: 189 IPFKLLLFVAMDGWSILIHGLVLSY 213 >gi|285018170|ref|YP_003375881.1| flagellar biosynthetic protein flip [Xanthomonas albilineans GPE PC73] gi|283473388|emb|CBA15893.1| probable flagellar biosynthetic protein flip [Xanthomonas albilineans] Length = 271 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 91/236 (38%), Positives = 137/236 (58%), Gaps = 10/236 (4%) Query: 16 LVFAKSSLHDVMNIPA------DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVF 69 A++S + ++P + ++T + T +++ P +L+++T F R IV Sbjct: 37 AATAQNSGPTLPSLPDVNVGKIGAQSVSLPLQTLLLMTAITLLPSMLLVLTAFTRITIVL 96 Query: 70 SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129 +LR MG G P N V++ LALF+T VM P +++ + G+ P +N QI TA Sbjct: 97 GLLRQAMGTGQTPSNQVLMGLALFLTALVMMPVWEKAWDHGMSPYLNGQIDFQTAWTLTT 156 Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189 +P FM RE DL F MA N + D I + +L+ SF+ SEL+ +FEIGF Sbjct: 157 QPLRAFMLAQIRESDLMTFAGMAG----NGTYSSPDAIPFPVLVASFVTSELKTAFEIGF 212 Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LI +PF+IID++VA+++M+MGMMM+ P IS PFK++ FVL+DGW L V L SF Sbjct: 213 LIFIPFVIIDLVVASVLMSMGMMMMSPMLISAPFKILLFVLVDGWVLTVGTLAASF 268 >gi|145301463|ref|YP_001144302.1| type III secretion system protein [Aeromonas salmonicida subsp. salmonicida A449] gi|38201229|emb|CAD56764.1| ascR protein [Aeromonas salmonicida subsp. salmonicida] gi|66947958|emb|CAE83095.1| AscR protein [Aeromonas salmonicida subsp. salmonicida] gi|142856345|gb|ABO92554.1| AscR protein [Aeromonas salmonicida subsp. salmonicida A449] gi|145284338|gb|ABP51919.1| AscR [Aeromonas veronii bv. sobria] Length = 217 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 69/208 (33%), Positives = 120/208 (57%), Gaps = 2/208 (0%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + +L++ P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ YVM Sbjct: 8 LNLIVGLALLALLPFIAVMATSFVKLAVVFSLLRNALGVQQIPPNMAMYGLAIILSIYVM 67 Query: 100 SPT--LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +P + + + + + P+ F++ + ++ + F+D Sbjct: 68 APVGFATQDYLRQNEVSLAKSESVEKFLDEGIAPYRDFLKKQIKPREHAFFIDSTKQLWP 127 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + + + IL+P+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P Sbjct: 128 SKYADRLEPDSLLILLPAFTVSELSRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPM 187 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 +ISLPFK++ FVL+DGW+ L LV S+ Sbjct: 188 TISLPFKLLLFVLLDGWARLTHGLVISY 215 >gi|153950465|ref|YP_001399618.1| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis IP 31758] gi|152961960|gb|ABS49421.1| flagellar biosynthetic protein FliP [Yersinia pseudotuberculosis IP 31758] Length = 256 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 140/246 (56%), Gaps = 8/246 (3%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRT--FGIFTILSIAPILLIM 58 +I L+ L+ A+ + N + + V+ + T+L + PI+++M Sbjct: 13 IISRGLLVGGLLYSPLLLAQEGGITLFNTVQTATGQDYNVKIEILILMTLLGLLPIMMLM 72 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +TCF RFIIV +ILR +G+ PPN V+ +AL +T VM P + + + P ++ Sbjct: 73 MTCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKIHQDAVIPFQQDE 132 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 IT + A+ R P +M T K L M +A S + + ++ P++++ Sbjct: 133 ITLSQALGRAEVPLKNYMLAQTSTKSLDQMMAIAQVSG------EPQQQDLSVVTPAYVL 186 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF+I +PFL+ID+IVA+I+MAMGMMML P +SLPFK++ FVL DGW+L+V Sbjct: 187 SELKTAFQIGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLMV 246 Query: 239 ENLVKS 244 L S Sbjct: 247 GTLTAS 252 >gi|319790413|ref|YP_004152046.1| flagellar biosynthetic protein FliP [Thermovibrio ammonificans HB-1] gi|317114915|gb|ADU97405.1| flagellar biosynthetic protein FliP [Thermovibrio ammonificans HB-1] Length = 232 Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 90/236 (38%), Positives = 153/236 (64%), Gaps = 5/236 (2%) Query: 10 FLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVF 69 +T L ++ + + A L ++ + T+L++ P LLI +T F R +I+ Sbjct: 1 MFLTATLFPLQAQGATLNELTAKLGNLDITLKLVFLVTLLAVVPSLLIALTSFTRIVIIL 60 Query: 70 SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129 S+LR +G PPN V+I+L+LF+TF+ M+PT ++ + ++P +N QIT A++R + Sbjct: 61 SLLRHALGTPQTPPNQVVIALSLFLTFFTMAPTFEKIDKEALKPYLNGQITAVEAVERAS 120 Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189 P FM +NTR++DL LF+D+ RN + + + L+P+FM+SE++ +FE F Sbjct: 121 RPLKEFMLHNTRKEDLKLFLDI-----RNERPKGPEEVSFVTLVPAFMVSEIKTAFEFVF 175 Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +I LPF++ID++VA+I+M+MGMMM+PP +SLPFK+I FV+ GW LL+++++ S+ Sbjct: 176 VIFLPFMVIDLLVASILMSMGMMMIPPMMLSLPFKLILFVVSGGWELLIKSIIVSY 231 >gi|56695119|ref|YP_165466.1| flagellar biosynthesis protein FliP [Ruegeria pomeroyi DSS-3] gi|56676856|gb|AAV93522.1| flagellar biosynthetic protein FliP [Ruegeria pomeroyi DSS-3] Length = 247 Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 98/243 (40%), Positives = 153/243 (62%), Gaps = 4/243 (1%) Query: 5 CFFALFLVTPELVFAKSSLHDV-MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63 A+ L+T ++ + D+ +++ S+S ++ + T+LS+AP L IM+TCFP Sbjct: 7 VLAAITLLTGAMLAGPVAAQDISLSLGEGGSVSARTIQLILLITVLSLAPGLAIMITCFP 66 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 + V +ILR G+G+ PPN++I+SLALF+T++VM P + GI P+M ++ Sbjct: 67 FLVTVLAILRQGIGLQQSPPNMLIVSLALFLTYFVMEPVFTEAWTTGIAPMMAEELALEP 126 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 A+++ PF FM D F MA+ +T +L+PSFM+SE+ R Sbjct: 127 ALEKAIAPFKAFMAARL---DADTFFAMANLRPDGAALTATPEAPLSVLVPSFMLSEIAR 183 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 +F+IGFL+ LPFLIID++VA ++M+MGMMM+PP ++SLPFK+ FFVL DGWSL+ LV+ Sbjct: 184 AFQIGFLVFLPFLIIDLVVAAVLMSMGMMMVPPATVSLPFKLAFFVLADGWSLIASALVR 243 Query: 244 SFI 246 S++ Sbjct: 244 SYM 246 >gi|83647782|ref|YP_436217.1| type III secretion system protein [Hahella chejuensis KCTC 2396] gi|83635825|gb|ABC31792.1| Type III secretory pathway, component EscR [Hahella chejuensis KCTC 2396] Length = 215 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 74/210 (35%), Positives = 123/210 (58%), Gaps = 2/210 (0%) Query: 38 WIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFY 97 + G +LS+ P + IM T F + +VFS+LR +G+ +PPN+ + LA+ ++ Y Sbjct: 5 QAIPLIGTLVLLSLIPFIAIMTTSFIKLAVVFSLLRNALGIQQIPPNMALYGLAIVLSIY 64 Query: 98 VMSPTLDRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSS 155 +M+P + + + ++ + +P F+ ++ EK+ F++ A + Sbjct: 65 IMAPVGYQIADTVKEKGFDLSQSESLKELANSAIDPMSEFLTKHSSEKERGFFLESAETL 124 Query: 156 HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215 + D +L+PSF ISEL+ +FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ Sbjct: 125 WPKEYAARLDTNSMLVLVPSFTISELKSAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVS 184 Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 P +ISLPFK++ FVL+DGW+ L LV S+ Sbjct: 185 PMTISLPFKLLLFVLLDGWTRLTHGLVLSY 214 >gi|238762376|ref|ZP_04623347.1| Lateral flagellar export/assembly protein (FliP-like) [Yersinia kristensenii ATCC 33638] gi|238699361|gb|EEP92107.1| Lateral flagellar export/assembly protein (FliP-like) [Yersinia kristensenii ATCC 33638] Length = 248 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 141/246 (57%), Gaps = 8/246 (3%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRT--FGIFTILSIAPILLIM 58 +I L+ L+ A+ + + + + V+ + T+L + PI+++M Sbjct: 5 IISSGLVISALLYSPLLLAQQGGITLFSTAQTAAGQDYNVKIEILILMTLLGLLPIMMLM 64 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +TCF RFIIV +ILR +G+ PPN V+ +AL +T VM P + + + P N++ Sbjct: 65 MTCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKVHQDAVIPFQNDE 124 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 IT A+ R P +M T K L MD+A S + + I+ P++++ Sbjct: 125 ITLPQALARAEIPLKNYMLAQTSNKSLDQMMDIAQVSG------EPQQQDLTIVTPAYLL 178 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF+I +PFL+ID+IVA+I+MAMGMMML P +SLPFK++ FVL DGW+L+V Sbjct: 179 SELKTAFQIGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLIV 238 Query: 239 ENLVKS 244 L S Sbjct: 239 GTLTAS 244 >gi|294665992|ref|ZP_06731255.1| HrcR protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604240|gb|EFF47628.1| HrcR protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 214 Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 115/206 (55%), Gaps = 3/206 (1%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 + +L + P ++VT + + ++V +LR +G+ VPPN+V+ +AL ++ +VM+P Sbjct: 9 LLLVVIMLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAP 68 Query: 102 TLDRSIEMGIQPLMNNQITETTA--IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 + + Q + EPF F+ +TRE++ + FM A Sbjct: 69 VGMEAFKAA-QNYGAGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKD 127 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + +L P+F +SEL +F IGFL+ L F++ID++VA +MAMG+ + PT++ Sbjct: 128 KAATLKSDDLLVLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNV 187 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 ++PFK++ FV +DGWS+L+ LV S+ Sbjct: 188 AIPFKLLLFVAMDGWSMLMHGLVLSY 213 >gi|294828142|ref|NP_712792.2| flagellar biosynthesis protein FliP [Leptospira interrogans serovar Lai str. 56601] gi|293385989|gb|AAN49810.2| flagellar biosynthesis protein FliP [Leptospira interrogans serovar Lai str. 56601] Length = 251 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 141/226 (62%), Gaps = 7/226 (3%) Query: 23 LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82 L+ +N ++ + + TILS+AP +++ +T F + +IV +R + + ++P Sbjct: 29 LNINVNEAKSPRETSLSLMVLFLVTILSLAPAIVMSLTSFTKIVIVLDFVRRALSIQNLP 88 Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN--- 139 PN V++ LALFMTF++M+PTL+ E + P + +I ++ P FM Sbjct: 89 PNQVMMGLALFMTFFIMAPTLNTVNEKALGPYLEGKIDTNAFFEKGMIPIREFMMRQIGT 148 Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199 + KD++LF+ + + D + +LIP+FM+SE++++F IG +I +PF++ID Sbjct: 149 SGAKDVALFLKIGKVEK----VESFDDVPSYVLIPAFMLSEIKKAFWIGIVIFIPFIVID 204 Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++VA+ +++MG+MMLPP +SLPFK+I FVL+DGW+L+V LV+S+ Sbjct: 205 LVVASALLSMGLMMLPPVMVSLPFKLILFVLVDGWNLIVYELVRSY 250 >gi|149178714|ref|ZP_01857297.1| flagellar biosynthetic protein fliP-putative transporter of flagellar protein [Planctomyces maris DSM 8797] gi|148842412|gb|EDL56792.1| flagellar biosynthetic protein fliP-putative transporter of flagellar protein [Planctomyces maris DSM 8797] Length = 330 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 81/207 (39%), Positives = 125/207 (60%), Gaps = 14/207 (6%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +LIM T F RF+IVF +LR +G +PPN V+ SL+LF+T VM+P +++ E GI Sbjct: 119 APSILIMTTSFIRFVIVFGLLRQALGTQQLPPNQVLTSLSLFLTIMVMAPIWEKAYEEGI 178 Query: 112 QPLMNNQ----ITETTAIQRVAEPFWVFMRNNT----REKDLSLFMDM------AHSSHR 157 P N ++ A Q+ P FM + + +F+D + + Sbjct: 179 VPYTNQTQQAPVSLEAAFQKTVAPLRKFMSDQIELTGNSDTVWMFLDYQQPLPGSPGAES 238 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 D + +L+P++M+SE++ +F IGF + LPF++IDM++++I+++MGMMMLPP Sbjct: 239 YQPPRDYDEVPLTVLLPAYMLSEVKTAFLIGFQLYLPFIVIDMVISSILISMGMMMLPPV 298 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKS 244 ISLPFK++ FVLIDGW L V L++S Sbjct: 299 LISLPFKILLFVLIDGWLLTVGMLLES 325 >gi|325917011|ref|ZP_08179250.1| HrcR protein [Xanthomonas vesicatoria ATCC 35937] gi|325536762|gb|EGD08519.1| HrcR protein [Xanthomonas vesicatoria ATCC 35937] Length = 214 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 114/205 (55%), Gaps = 1/205 (0%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 + +L + P ++VT + + ++V +LR +G+ VPPN+V+ +AL ++ +VM+P Sbjct: 9 LLLVVIMLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAP 68 Query: 102 TLDRSIEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD 160 + + + + EPF F+ +T E++ + F+ A Sbjct: 69 VGMEAFKAAQNYSPGADNSRVVVLLDACREPFRQFLLKHTHEREKAFFIRSAQQIWPKDK 128 Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220 + +L P+F +SEL +F IGFL+ L F++ID++VA +MAMG+ + PT+++ Sbjct: 129 ADTLKPDDLLVLAPAFTLSELTDAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVA 188 Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245 +PFK++ FV +DGWS+L+ LV S+ Sbjct: 189 IPFKLLLFVALDGWSMLIHGLVLSY 213 >gi|54124952|gb|AAV30220.1| AscR [Aeromonas hydrophila] Length = 217 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 69/208 (33%), Positives = 120/208 (57%), Gaps = 2/208 (0%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + +L++ P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ YVM Sbjct: 8 LNLIVGLALLALLPFIAVMATSFVKLAVVFSLLRNALGVQQIPPNMAMYGLAIILSIYVM 67 Query: 100 SPT--LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +P + + + + + P+ F++ + ++ + F+D Sbjct: 68 APVGFATQGYLHQNEVSLTKSESVEKFLDEGMAPYRAFLKKQIKPREHAFFIDSTKQLWP 127 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + + + IL+P+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P Sbjct: 128 SEYADRLEPDSLLILLPAFTVSELSRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPM 187 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 +ISLPFK++ FVL+DGW+ L LV S+ Sbjct: 188 TISLPFKLLLFVLLDGWARLTHGLVTSY 215 >gi|320184486|gb|EFW59290.1| Flagellar biosynthesis protein FliP [Shigella flexneri CDC 796-83] gi|332096919|gb|EGJ01908.1| flagellar biosynthetic protein FliP [Shigella boydii 3594-74] Length = 222 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 81/216 (37%), Positives = 127/216 (58%), Gaps = 6/216 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58 M R A L+ A + L + + P +W V+T T L+ P +L+M Sbjct: 1 MRRLLSVAPVLLWLVTPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIVF +LR +G S PPN V++ LALF+TF++MSP +D+ QP + Sbjct: 61 MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I+ A+++ A+P FM TRE DL LF +A++ + + + RIL P+++ Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILRPAYVT 176 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214 SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+ Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMV 212 >gi|22127344|ref|NP_670767.1| flagellar biosynthesis protein FliP [Yersinia pestis KIM 10] gi|45442780|ref|NP_994319.1| flagellar biosynthesis protein FliP [Yersinia pestis biovar Microtus str. 91001] gi|51597653|ref|YP_071844.1| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis IP 32953] gi|108809075|ref|YP_652991.1| flagellar biosynthesis protein FliP [Yersinia pestis Antiqua] gi|108810732|ref|YP_646499.1| flagellar biosynthesis protein FliP [Yersinia pestis Nepal516] gi|145597801|ref|YP_001161877.1| flagellar biosynthesis protein FliP [Yersinia pestis Pestoides F] gi|150260265|ref|ZP_01916993.1| lateral flagellar export and assembly protein [Yersinia pestis CA88-4125] gi|162418133|ref|YP_001604861.1| flagellar biosynthesis protein FliP [Yersinia pestis Angola] gi|165925078|ref|ZP_02220910.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Orientalis str. F1991016] gi|165939035|ref|ZP_02227587.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Orientalis str. IP275] gi|166008695|ref|ZP_02229593.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua str. E1979001] gi|166211840|ref|ZP_02237875.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua str. B42003004] gi|167399704|ref|ZP_02305228.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418889|ref|ZP_02310642.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425117|ref|ZP_02316870.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466357|ref|ZP_02331061.1| flagellar biosynthetic protein FliP [Yersinia pestis FV-1] gi|170022955|ref|YP_001719460.1| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis YPIII] gi|218927896|ref|YP_002345771.1| flagellar biosynthesis protein FliP [Yersinia pestis CO92] gi|229837392|ref|ZP_04457555.1| Flagellar biosynthesis protein fliP [Yersinia pestis Pestoides A] gi|229840605|ref|ZP_04460764.1| Flagellar biosynthesis protein fliP [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842844|ref|ZP_04462996.1| Flagellar biosynthesis protein fliP [Yersinia pestis biovar Orientalis str. India 195] gi|229900929|ref|ZP_04516053.1| Flagellar biosynthesis protein fliP [Yersinia pestis Nepal516] gi|270487690|ref|ZP_06204764.1| flagellar biosynthetic protein FliP [Yersinia pestis KIM D27] gi|294502773|ref|YP_003566835.1| putative flagellar assembly protein [Yersinia pestis Z176003] gi|21960427|gb|AAM87018.1|AE013950_3 flagellar biosynthesis protein [Yersinia pestis KIM 10] gi|45437646|gb|AAS63196.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Microtus str. 91001] gi|51590935|emb|CAH22591.1| Putative flagellar assembly/export protein, fliP [Yersinia pseudotuberculosis IP 32953] gi|108774380|gb|ABG16899.1| flagellar assembly protein [Yersinia pestis Nepal516] gi|108780988|gb|ABG15046.1| putative flagellar assembly protein [Yersinia pestis Antiqua] gi|115346507|emb|CAL19383.1| putative flagellar assembly protein [Yersinia pestis CO92] gi|145209497|gb|ABP38904.1| flagellar assembly protein [Yersinia pestis Pestoides F] gi|149289673|gb|EDM39750.1| lateral flagellar export and assembly protein [Yersinia pestis CA88-4125] gi|162350948|gb|ABX84896.1| flagellar biosynthetic protein FliP [Yersinia pestis Angola] gi|165912991|gb|EDR31616.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Orientalis str. IP275] gi|165923278|gb|EDR40429.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Orientalis str. F1991016] gi|165992034|gb|EDR44335.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua str. E1979001] gi|166206586|gb|EDR51066.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua str. B42003004] gi|166962883|gb|EDR58904.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167052208|gb|EDR63616.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055880|gb|EDR65661.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749489|gb|ACA67007.1| flagellar biosynthetic protein FliP [Yersinia pseudotuberculosis YPIII] gi|229682268|gb|EEO78360.1| Flagellar biosynthesis protein fliP [Yersinia pestis Nepal516] gi|229690111|gb|EEO82168.1| Flagellar biosynthesis protein fliP [Yersinia pestis biovar Orientalis str. India 195] gi|229696971|gb|EEO87018.1| Flagellar biosynthesis protein fliP [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705515|gb|EEO91525.1| Flagellar biosynthesis protein fliP [Yersinia pestis Pestoides A] gi|262360805|gb|ACY57526.1| putative flagellar assembly protein [Yersinia pestis D106004] gi|262364750|gb|ACY61307.1| putative flagellar assembly protein [Yersinia pestis D182038] gi|270336194|gb|EFA46971.1| flagellar biosynthetic protein FliP [Yersinia pestis KIM D27] gi|294353232|gb|ADE63573.1| putative flagellar assembly protein [Yersinia pestis Z176003] gi|320016727|gb|ADW00299.1| Flagellar biosynthesis protein fliP [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 256 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 140/246 (56%), Gaps = 8/246 (3%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRT--FGIFTILSIAPILLIM 58 +I L+ L+ A+ + N + + V+ + T+L + PI+++M Sbjct: 13 IISRGLLVGGLLYSPLLLAQEGGITLFNTVQTATGQDYNVKIEILILMTLLGLLPIMMLM 72 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +TCF RFIIV +ILR +G+ PPN V+ +AL +T VM P + + + P ++ Sbjct: 73 MTCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKIHQDAVIPFQQDE 132 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 IT + A+ R P +M T K L M +A S + + ++ P++++ Sbjct: 133 ITLSQALGRAEAPLKNYMLAQTSTKSLDQMMAIAQVSG------EPQQQDLSVVTPAYVL 186 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F++GF+I +PFL+ID+IVA+I+MAMGMMML P +SLPFK++ FVL DGW+L+V Sbjct: 187 SELKTAFQMGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLMV 246 Query: 239 ENLVKS 244 L S Sbjct: 247 GTLTAS 252 >gi|83747860|ref|ZP_00944893.1| HrcR [Ralstonia solanacearum UW551] gi|83725507|gb|EAP72652.1| HrcR [Ralstonia solanacearum UW551] Length = 252 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 57/208 (27%), Positives = 119/208 (57%), Gaps = 4/208 (1%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 + +++ P ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ ++M+P Sbjct: 44 LIVMAVAIALLPFAAMVVTSYTKIVVVLGLLRNALGVQQVPPNMVLNGIAMIVSCFIMAP 103 Query: 102 TLDRSIEMGIQPLMNN---QITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +++ L IT+ + +PF F+ +T ++ + FM A Sbjct: 104 VGMEAMQRAHVQLNAQGGANITQVMPLLDAARDPFREFLNKHTNAREKAFFMRSAQQLWP 163 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + +L P+F ++EL +F IGFL+ L F++ID+++A ++MA+G+ + P+ Sbjct: 164 PAKAALLKEDDLIVLAPAFTLTELTSAFRIGFLLYLAFIVIDLVIANLLMALGLSQVTPS 223 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++++PFK++ FV++DGWS+LV LV ++ Sbjct: 224 NVAIPFKLLLFVVMDGWSVLVHGLVNTY 251 >gi|186896787|ref|YP_001873899.1| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis PB1/+] gi|186699813|gb|ACC90442.1| flagellar biosynthetic protein FliP [Yersinia pseudotuberculosis PB1/+] Length = 256 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 140/246 (56%), Gaps = 8/246 (3%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRT--FGIFTILSIAPILLIM 58 +I L+ L+ A+ + N + + V+ + T+L + PI+++M Sbjct: 13 IISRGLLVGGLLYSPLLLAQEGGITLFNTVQTATGQDYNVKIEILILMTLLGLLPIMMLM 72 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +TCF RFIIV +ILR +G+ PPN V+ +AL +T VM P + + + P ++ Sbjct: 73 MTCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKIHQDAVIPFQQDE 132 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 IT + A+ R P +M T K L M +A S + + ++ P++++ Sbjct: 133 ITLSQALGRAEAPLKNYMLAQTSTKSLDQMMAIAQVSG------EPQQQDLSVVTPAYVL 186 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F++GF+I +PFL+ID+IVA+I+MAMGMMML P +SLPFK++ FVL DGW+L+V Sbjct: 187 SELKTAFQMGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLMV 246 Query: 239 ENLVKS 244 L S Sbjct: 247 GTLTAS 252 >gi|157373224|ref|YP_001471824.1| flagellar biosynthesis protein FliP [Shewanella sediminis HAW-EB3] gi|157315598|gb|ABV34696.1| Triacylglycerol lipase [Shewanella sediminis HAW-EB3] Length = 242 Score = 179 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 89/245 (36%), Positives = 132/245 (53%), Gaps = 4/245 (1%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 M+R L+ P ++ + + T+LS P LL+M+T Sbjct: 1 MLRALLLLFCLLAPSAFANDGFTLFTLDDGQQSQSVNIKLEILALMTVLSFLPALLMMLT 60 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R I+V +ILR +G+ PPN V++ +AL +T +VM P + P I Sbjct: 61 SFTRIIVVLAILRQALGLQQSPPNKVLLGIALVLTLFVMRPVGQVMYDEAYLPYDQGLIE 120 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A+ P FM TRE DL + +A D I + +L+P+F++SE Sbjct: 121 LPEAVNIGVVPLRKFMLAQTRETDLEQMLKIADEPV----TLTADEIPFFVLMPAFVLSE 176 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +F+IGFL+ LPFL+ID++VA+++M+MGMMML P ISLPFK++ FVL+DGWS+ V Sbjct: 177 LKTAFQIGFLLFLPFLVIDLVVASVLMSMGMMMLSPLIISLPFKLMVFVLVDGWSMTVST 236 Query: 241 LVKSF 245 LV SF Sbjct: 237 LVASF 241 >gi|220903656|ref|YP_002478968.1| flagellar biosynthesis protein FliP [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867955|gb|ACL48290.1| flagellar biosynthetic protein FliP [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 225 Score = 179 bits (453), Expect = 5e-43, Method: Composition-based stats. Identities = 90/227 (39%), Positives = 145/227 (63%), Gaps = 7/227 (3%) Query: 20 KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79 + +L P +SI ++ + TILS+AP +++ VT F R IIVFS LR MG+ Sbjct: 5 QLTLAGGAKSPEKVSI---LLEILFLLTILSVAPAIMLTVTSFTRIIIVFSFLRQAMGVQ 61 Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139 +PP ++ SLA+FMT +M P + + +QP +N +I A+ + P FM + Sbjct: 62 QLPPTQILASLAIFMTVVIMFPVGRQINDDALQPYLNERIDYREALDKAQAPLRSFMFKH 121 Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199 TREKDLS+F +++ + + +L +++ISEL+ +F IGFLI +PFL++D Sbjct: 122 TREKDLSIFYSISNMEAPK----NKEEVPTMLLAAAYVISELKTAFTIGFLIYIPFLVLD 177 Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 M+++++++AMGMMMLPP +S+PFK++ FV++DGW+LLV +LV SF+ Sbjct: 178 MVISSVLLAMGMMMLPPMMVSMPFKLLLFVMVDGWNLLVGSLVNSFL 224 >gi|146278775|ref|YP_001168934.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides ATCC 17025] gi|145557016|gb|ABP71629.1| flagellar biosynthetic protein FliP [Rhodobacter sphaeroides ATCC 17025] Length = 236 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 96/240 (40%), Positives = 145/240 (60%), Gaps = 5/240 (2%) Query: 6 FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65 F LV + ++ S++T V+ + T+LS+ P L +M+TCFP Sbjct: 1 MFMPLLVLAATAAPAAGQSLSVDFGDGSSLTTRSVQLIVLITLLSLVPALGMMITCFPFI 60 Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 + V SILR +G+ PPN++I+SLALF+T+Y+M P + GI+PL N+I A+ Sbjct: 61 VTVLSILRQAIGLQQAPPNMLIVSLALFLTWYIMDPVFTEAWTRGIEPLTRNEIDIQQAL 120 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185 + PF FM L L + R +I+ + +L+PSF++SE++R+F Sbjct: 121 VLASAPFRGFMAAR-----LDLETFSTLQALRPGEISPPLEAPFSVLVPSFLLSEIQRAF 175 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 EIGFLI LPFLIID++VA ++M+MGMMM+PP +S+PFK+ FFV+ DGWSL+ LV+S+ Sbjct: 176 EIGFLIFLPFLIIDLVVAAVLMSMGMMMVPPAVVSMPFKLAFFVVGDGWSLISGALVRSY 235 >gi|294625840|ref|ZP_06704456.1| HrcR protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599868|gb|EFF43989.1| HrcR protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 214 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 116/205 (56%), Gaps = 1/205 (0%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 + +L + P ++VT + + ++V +LR +G+ VPPN+V+ +AL ++ +VM+P Sbjct: 9 LLLVVIMLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAP 68 Query: 102 TLDRSIEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD 160 + + + + + EPF F+ +TRE++ + FM A Sbjct: 69 VGMEAFKAAQNYGTGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDK 128 Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220 + +L P+F +SEL +F IGFL+ + F++ID++VA +MAMG+ + PT+++ Sbjct: 129 AATLKSDDLLVLAPAFTLSELTEAFRIGFLLYMVFIVIDLVVANALMAMGLSQVTPTNVA 188 Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245 +PFK++ FV +DGWS+L+ LV S+ Sbjct: 189 IPFKLLLFVAMDGWSMLMHGLVLSY 213 >gi|39545585|gb|AAR27892.1| AscR [Aeromonas hydrophila] Length = 217 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 69/208 (33%), Positives = 120/208 (57%), Gaps = 2/208 (0%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + +L++ P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ YVM Sbjct: 8 LNLIVGLALLALLPFIAVMATSFVKLAVVFSLLRNALGVQQIPPNMAMYGLAIILSIYVM 67 Query: 100 SPT--LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +P + + + + + P+ F++ + ++ + F+D Sbjct: 68 APVGFATQDYLRQNEVSLAKSESVEKFLDEGMAPYRTFLKKQIKPREHAFFIDSTKQLWP 127 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + + + IL+P+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P Sbjct: 128 SEYADRLESDSLLILLPAFTVSELSRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPM 187 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 +ISLPFK++ FVL+DGW+ L LV S+ Sbjct: 188 TISLPFKLLLFVLLDGWARLTHGLVISY 215 >gi|332162918|ref|YP_004299495.1| Lateral flagellar export/assembly protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667148|gb|ADZ43792.1| Lateral flagellar export/assembly protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862337|emb|CBX72497.1| flagellar biosynthetic protein fliP [Yersinia enterocolitica W22703] Length = 256 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 89/246 (36%), Positives = 141/246 (57%), Gaps = 8/246 (3%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRT--FGIFTILSIAPILLIM 58 +I L+ L+ A+ + + + + V+ + T+L + PI+++M Sbjct: 13 IISSGLVISGLLYSPLLLAQEGGITLFSTAQTAAGQDYNVKIEILILMTLLGLLPIMMLM 72 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +TCF RFIIV +ILR +G+ PPN V+ +AL +T VM P + + + P N++ Sbjct: 73 MTCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKVHQDAVIPFQNDE 132 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 IT A+ R P +M T K L MD+A S + + ++ P++++ Sbjct: 133 ITLPQALARAEVPLKNYMLAQTSTKSLDQMMDIAQVSG------EPQQQDLTVVTPAYLL 186 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F+IGF+I +PFL+ID+IVA+I+MAMGMMML P +SLPFK++ FVL DGW+L+V Sbjct: 187 SELKTAFQIGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLIV 246 Query: 239 ENLVKS 244 L S Sbjct: 247 GTLTAS 252 >gi|307824489|ref|ZP_07654714.1| flagellar biosynthetic protein FliP [Methylobacter tundripaludum SV96] gi|307734473|gb|EFO05325.1| flagellar biosynthetic protein FliP [Methylobacter tundripaludum SV96] Length = 252 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 96/245 (39%), Positives = 151/245 (61%), Gaps = 4/245 (1%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 ++ L + TP A V T ++ + T+L++ P LL+ +T Sbjct: 9 LLIIGMAFLLIETPAYAAAGIEAVTVTTGKQGAQTYTVTIQILALMTLLTVLPALLLTMT 68 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R +IV S+LRT +G GS P N V++ L++F+T ++M P D+ +QP + +I Sbjct: 69 SFTRIMIVLSLLRTALGTGSAPSNQVLLGLSMFLTIFIMMPVFDKVNAEAVQPYLEEKID 128 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 T AI++ +EPF FM TRE DL LF+ ++ ++ +++ + +L+P+F+ SE Sbjct: 129 VTVAIEKASEPFRQFMLKQTREADLELFIRISG----KAELESAENVPFSLLLPAFVTSE 184 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +F+IGFLI LPFL+ID++VA+++M+MGMMML P ISLPFK++ FVL DGWSL++E Sbjct: 185 LKTAFQIGFLIFLPFLVIDLVVASVLMSMGMMMLSPMIISLPFKIMLFVLADGWSLIMEM 244 Query: 241 LVKSF 245 L SF Sbjct: 245 LAASF 249 >gi|187918149|ref|YP_001883712.1| flagellar biosynthesis protein FliP [Borrelia hermsii DAH] gi|119860997|gb|AAX16792.1| flagellar biosynthetic protein FliP [Borrelia hermsii DAH] Length = 254 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 89/258 (34%), Positives = 145/258 (56%), Gaps = 16/258 (6%) Query: 1 MIRYCFFALFLVTPELVFAKS---SLHDVMNIP------ADLSISTWIVRTFGIFTILSI 51 M + LFL L FA++ +N P + + ++ I T++++ Sbjct: 1 MGKKLSLFLFLGVINLAFAQTKSLQPTTGLNFPFVDLVNSVGGGIVFPLQLLLILTVITL 60 Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 +P L+++T F R IV +R + + PPN VI+ LALF+T + M PT + + Sbjct: 61 SPAFLVLMTSFLRIAIVLDFIRRALSLQQSPPNQVIMGLALFLTLFTMWPTFNIIYKDAY 120 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRN---NTREKDLSLFMDMAHSSHRNTDITKNDHIE 168 PL +++I+ R P FM N++ +++ LFM +++ S + Sbjct: 121 LPLKDSKISFNEFYDRGIAPLRNFMYKQMSNSKHEEIKLFMSISNYSRPK----NFSEVP 176 Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 +LI SF++ EL+ +F++G LI LPF++ID+IVA ++MAMGM+MLPP ISLPFK+I F Sbjct: 177 THVLIASFVLHELKVAFKMGILIFLPFIVIDIIVAAVLMAMGMIMLPPVMISLPFKLILF 236 Query: 229 VLIDGWSLLVENLVKSFI 246 V++DGW+L+ LVKSF+ Sbjct: 237 VMVDGWTLITSGLVKSFM 254 >gi|255022051|ref|ZP_05294057.1| Flagellar biosynthesis pathway, component FliP [Acidithiobacillus caldus ATCC 51756] gi|254968537|gb|EET26093.1| Flagellar biosynthesis pathway, component FliP [Acidithiobacillus caldus ATCC 51756] Length = 231 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 88/206 (42%), Positives = 134/206 (65%), Gaps = 3/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+T + T+L+ P +++M+T F R IIV S+LR G+G+ ++PPN+V+I LALF+TF+VM Sbjct: 25 VQTVILMTVLTFLPAIVLMMTGFTRIIIVLSLLRQGLGLSTMPPNIVLIGLALFLTFFVM 84 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 PT + PL +++ T A+ +P +FMRNNT + ++ F+ M Sbjct: 85 QPTWSSINHQALIPLEQGKVSVTRALAIAEKPLRIFMRNNTTKDSVAQFLRM---DGIKK 141 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + I R+LIP+F +S+L FE+GFL+ LPFLIID++VA ++MAMGMMM+ P +I Sbjct: 142 TLRSEKDIPMRVLIPAFAVSQLESGFELGFLVYLPFLIIDLLVAAVLMAMGMMMVSPQTI 201 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 S+P K++ F L GW L+ LV+SF Sbjct: 202 SIPIKLLLFALGGGWLLVTGTLVRSF 227 >gi|46398252|gb|AAS91806.1| AcrR [Aeromonas hydrophila] Length = 217 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 69/208 (33%), Positives = 120/208 (57%), Gaps = 2/208 (0%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + +L++ P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ YVM Sbjct: 8 LNLIVGLALLALLPFIAVMATSFVKMAVVFSLLRNALGVQQIPPNMAMYGLAIILSIYVM 67 Query: 100 SPT--LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +P + + + + + P+ F++ + ++ + F+D Sbjct: 68 APVGFATQDYLRQNEVSLAKSESVEKFLDEGIAPYRAFLKKQIKPREHAFFIDSTKQLWP 127 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + + + IL+P+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P Sbjct: 128 SKYADRLEPDSLLILLPAFTVSELSRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPM 187 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 +ISLPFK++ FVL+DGW+ L LV S+ Sbjct: 188 TISLPFKLLLFVLLDGWARLTHGLVISY 215 >gi|12802687|gb|AAK08058.1|AF320050_2 HrcR [Xanthomonas oryzae pv. oryzae] gi|9711593|dbj|BAB07862.1| HrcR [Xanthomonas oryzae pv. oryzae] gi|24251298|gb|AAN46417.1| HrcR [Xanthomonas oryzae pv. oryzae] Length = 200 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 66/200 (33%), Positives = 114/200 (57%), Gaps = 3/200 (1%) Query: 48 ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107 +L + P ++VT + + ++V +LR +G+ VPPN+V+ +AL ++ +VM+P + Sbjct: 1 MLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF 60 Query: 108 EMGIQPLMNNQITETTA--IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165 + Q + EPF F+ +T E++ + FM A T Sbjct: 61 KAA-QNYGAGSDNSRIVVLLDACREPFRQFLLKHTPEREKAFFMRSAQQIWPKDKATTLK 119 Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225 + IL P+F +SEL +F IGFL+ L F++ID++VA +MAMG+ + PT++++PFK+ Sbjct: 120 SDDLLILAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKL 179 Query: 226 IFFVLIDGWSLLVENLVKSF 245 + FV +DGWS+L+ LV S+ Sbjct: 180 LLFVAMDGWSMLIHGLVLSY 199 >gi|254499102|ref|ZP_05111792.1| flagellar biosynthesis protein FliP [Legionella drancourtii LLAP12] gi|254351641|gb|EET10486.1| flagellar biosynthesis protein FliP [Legionella drancourtii LLAP12] Length = 241 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 91/242 (37%), Positives = 149/242 (61%), Gaps = 7/242 (2%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63 + + L P A +++ + ++S + ++ F + T+LS+AP +LIM++ F Sbjct: 6 FIVTFILLSAPLACLAGTNIGPIHLEQDNISPA---LQAFAVLTVLSLAPSILIMLSSFT 62 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 R ++V S+LR +G+ PPN VIISL+LF+T + M P P +Q+ T Sbjct: 63 RIVVVLSMLRNALGLQQTPPNTVIISLSLFLTLFTMMPVAKTIYNEAYLPYEAHQMNTET 122 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 ++ +P FM TREKD+++ + +A + + I++ LIP+F++SEL+ Sbjct: 123 SLNNAIKPLKKFMLQQTREKDMNVILQLAKEPMP----SSAEKIKFYQLIPAFLLSELQT 178 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 +F+IGF+I LPFL++D+IV+ I+M +GMMM+PP SISLP K++ F+LIDGW L+V+ LV Sbjct: 179 AFQIGFMIFLPFLLVDLIVSGILMTVGMMMMPPMSISLPVKILLFILIDGWDLVVQALVG 238 Query: 244 SF 245 SF Sbjct: 239 SF 240 >gi|226320576|ref|ZP_03796136.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 29805] gi|226233995|gb|EEH32716.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 29805] Length = 254 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 83/258 (32%), Positives = 139/258 (53%), Gaps = 16/258 (6%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNI---------PADLSISTWIVRTFGIFTILSI 51 M + F LF L FA++ N S + ++ + TI+++ Sbjct: 1 MRKCFIFFLFFSVTSLSFAQTKSLQTTNGLNFPFLNFDSIGGSEIAFSLQLLILLTIITL 60 Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 +P L+++T F R IV +R + + PP +++ LALF+T + M PT + E Sbjct: 61 SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNSIYEQAY 120 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNT---REKDLSLFMDMAHSSHRNTDITKNDHIE 168 PL ++I + P +FM R +++ LFM M++ + Sbjct: 121 LPLKESKINFNEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSMSNYDRPK----NFSEVP 176 Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP ISLPFK+I F Sbjct: 177 THVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLILF 236 Query: 229 VLIDGWSLLVENLVKSFI 246 V++DGW+L+ L+KSF+ Sbjct: 237 VMVDGWTLITSGLIKSFM 254 >gi|159024057|gb|ABW87285.1| HrcR [Xanthomonas fuscans subsp. fuscans] Length = 214 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 64/205 (31%), Positives = 115/205 (56%), Gaps = 1/205 (0%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 + +L + P ++VT + + ++V +LR +G+ VPPN+V+ +AL ++ +VM+P Sbjct: 9 LLLVVIMLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAP 68 Query: 102 TLDRSIEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD 160 + + + + + EPF F+ +TRE++ FM A Sbjct: 69 VGMEAFKAAQNYGTGSDNSRVVVLLDACREPFRQFLLKHTREREKVFFMRSAQQIWPKDK 128 Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220 + +L P+F +SEL +F IGFL+ L F++ID++VA +MAMG+ + PT+++ Sbjct: 129 AATLKSDDLLVLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVA 188 Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245 +PFK++ FV +DGWS+L+ LV S+ Sbjct: 189 IPFKLLLFVAMDGWSMLMHGLVLSY 213 >gi|260574384|ref|ZP_05842388.1| flagellar biosynthetic protein FliP [Rhodobacter sp. SW2] gi|259023280|gb|EEW26572.1| flagellar biosynthetic protein FliP [Rhodobacter sp. SW2] Length = 242 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 95/238 (39%), Positives = 146/238 (61%), Gaps = 5/238 (2%) Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67 AL ++ L + +N+ S+S ++ + T+LS+ P L +M+TCFP + Sbjct: 9 ALAVLLIGLAGPVLAQELTLNLGDQGSLSARSIQLLVLITVLSLVPGLAVMITCFPFIVT 68 Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127 V SILR +G+ PPN++I+SLALF+T+YVM P + G++PL + TAI Sbjct: 69 VLSILRQAIGLQQSPPNMLIVSLALFLTWYVMDPVFTEAWTTGMEPLTRGETDLQTAIPA 128 Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187 + PF VFM + A + R + + +++PSF++SE++R+FEI Sbjct: 129 ILAPFRVFMSARMDADTFA-----AMQALRPGESSSVAQAPLSLMVPSFLLSEIQRAFEI 183 Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GFLI LPFLIID++VA ++M+MGMMM+PP+ +SLPFK+ FFV+ DGWSL+ LV+S+ Sbjct: 184 GFLIFLPFLIIDLVVAAVLMSMGMMMVPPSIVSLPFKLAFFVVADGWSLVSGALVRSY 241 >gi|78358622|ref|YP_390071.1| flagellar biosynthesis protein FliP [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78221027|gb|ABB40376.1| flagellar biosynthetic protein FliP [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 237 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 93/227 (40%), Positives = 140/227 (61%), Gaps = 7/227 (3%) Query: 20 KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79 + +L P +S+ I+ + T+LS+AP +++ VT F R IIVF +R MG+ Sbjct: 17 QLTLSGGATEPEKVSV---ILEILFLLTVLSLAPAIMLTVTSFTRIIIVFHFVRQAMGLP 73 Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139 ++PPN V+ SLA+FMT +M P + +QP ++ +I A+ EP FM + Sbjct: 74 TLPPNQVLASLAIFMTVVIMMPVGKEINDRALQPYLDERIGFREALTVAQEPLREFMFKH 133 Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199 TREKDLS+F + D + +L ++ISEL+ F IGFLI +PFL++D Sbjct: 134 TREKDLSVFYGITGMERPR----NKDDVPTVMLAAGYVISELKTGFTIGFLIYIPFLVLD 189 Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 M+VA+I++AMGMMMLPP +S+PFK++ FV++DGWSLL +LV SF+ Sbjct: 190 MVVASILLAMGMMMLPPMMVSMPFKILLFVMVDGWSLLTTSLVNSFM 236 >gi|94987081|ref|YP_595014.1| flagellar biosynthesis protein FliP [Lawsonia intracellularis PHE/MN1-00] gi|94731330|emb|CAJ54693.1| Flagellar biosynthesis pathway, component FliP [Lawsonia intracellularis PHE/MN1-00] Length = 262 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 90/242 (37%), Positives = 146/242 (60%), Gaps = 4/242 (1%) Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64 FF L + E + + + + + ++ + T+LS+AP +++ VT F R Sbjct: 24 LFFPLSIQAAEDIAIPNLQLTLSGGQTEPEKVSLLLEILFMLTVLSLAPAIMLTVTSFTR 83 Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124 IIVF LR MG+ +PP ++ SLA+FMT +M P + + +QP ++ ++ + A Sbjct: 84 IIIVFHFLRQAMGIQQIPPTQILASLAIFMTVIIMFPVGKQINDTALQPYLDERLGFSEA 143 Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184 + R P F+ +TREKDLS+F +A D + +L +++ISEL+ Sbjct: 144 LTRAQAPLRTFLFKHTREKDLSIFYSIARMEQPK----NKDDVPTILLSAAYVISELKTG 199 Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 F IGFLI +PFLI+DM+V+++++AMGMMMLPP +S+PFK++ FV+IDGW+LL+ +LV S Sbjct: 200 FIIGFLIYIPFLIVDMVVSSVLLAMGMMMLPPMMVSMPFKLLLFVMIDGWNLLIGSLVNS 259 Query: 245 FI 246 F+ Sbjct: 260 FL 261 >gi|15594620|ref|NP_212409.1| flagellar biosynthesis protein FliP [Borrelia burgdorferi B31] gi|218249847|ref|YP_002374798.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi ZS7] gi|226321593|ref|ZP_03797119.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi Bol26] gi|2494561|sp|Q44763|FLIP_BORBU RecName: Full=Flagellar biosynthetic protein fliP gi|1165260|gb|AAA85599.1| FliP [Borrelia burgdorferi] gi|2688191|gb|AAC66673.1| flagellar biosynthesis protein (fliP) [Borrelia burgdorferi B31] gi|218165035|gb|ACK75096.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi ZS7] gi|226232782|gb|EEH31535.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi Bol26] gi|312149165|gb|ADQ29236.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi N40] Length = 254 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 83/258 (32%), Positives = 139/258 (53%), Gaps = 16/258 (6%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNI---------PADLSISTWIVRTFGIFTILSI 51 M + F LF L FA++ N S + ++ + TI+++ Sbjct: 1 MRKCFNFFLFFSVTSLSFAQTKSLQTTNGLNFPFLNFDSIGGSEIAFSLQLLILLTIITL 60 Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 +P L+++T F R IV +R + + PP +++ LALF+T + M PT + E Sbjct: 61 SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNSIYEQAY 120 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNT---REKDLSLFMDMAHSSHRNTDITKNDHIE 168 PL ++I + P +FM R +++ LFM M++ + Sbjct: 121 LPLKESKINFNEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSMSNYDRPK----NFSEVP 176 Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP ISLPFK+I F Sbjct: 177 THVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLILF 236 Query: 229 VLIDGWSLLVENLVKSFI 246 V++DGW+L+ L+KSF+ Sbjct: 237 VMVDGWTLITSGLIKSFM 254 >gi|327478782|gb|AEA82092.1| flagellar biosynthesis protein FliP [Pseudomonas stutzeri DSM 4166] Length = 251 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 83/234 (35%), Positives = 131/234 (55%), Gaps = 4/234 (1%) Query: 11 LVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70 + +N + + ++ I T+L P +L+M+TCF RFIIV + Sbjct: 18 MPLAAQAAGGEITLFNLNDTENGQEFSVKLQILIIMTLLGFLPAMLMMMTCFTRFIIVLA 77 Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130 ILR +G+ PPN V+I +AL +T VM P +P N++IT A+ Sbjct: 78 ILRQAIGLQQSPPNQVLIGIALIVTLLVMRPVWQEIHSQAYEPFHNDEITLEQALDSAKG 137 Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190 FM T + L + +A D +++ +L+P+F++SEL+ +F++GF+ Sbjct: 138 SLAGFMLAQTNKNSLETMVALAGEQLPE----DLDELDFSLLLPAFVLSELKTAFQLGFM 193 Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 I +PFL+ID++VA+++MAMGMMML P ISLPFK++ FVL+DGW+LL+ L S Sbjct: 194 IFVPFLVIDLVVASVLMAMGMMMLSPMMISLPFKLMVFVLVDGWALLMGTLTTS 247 >gi|83646012|ref|YP_434447.1| type III secretion system protein [Hahella chejuensis KCTC 2396] gi|83634055|gb|ABC30022.1| Type III secretory pathway, component EscR [Hahella chejuensis KCTC 2396] Length = 215 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 70/202 (34%), Positives = 119/202 (58%), Gaps = 2/202 (0%) Query: 46 FTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDR 105 +++ P +M T F + +V +LR +G+ +PPN+ + LA+ +T Y+M+P Sbjct: 13 LAGIALIPFFAVMATSFVKIAVVLGLLRNALGIQQIPPNMALYGLAIILTAYIMAPVGIS 72 Query: 106 SI-EMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163 + E+ +P+ E A+ ++P+ F++ + E + + F + A Sbjct: 73 AYNELSTKPISLENTQELKALMDTASQPYKEFLQRHGSEDEQTFFHETAAEIWPEDVAKG 132 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 + + +LIP+F SEL +FEIGFLI LPFL ID+I++ I++AMGMMM+ P +ISLPF Sbjct: 133 LEKDSFFVLIPAFTASELTSAFEIGFLIYLPFLAIDLIISNILLAMGMMMVSPMTISLPF 192 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K++ FVL+DGW+ L+ LV ++ Sbjct: 193 KLLLFVLMDGWTRLIHGLVLAY 214 >gi|114566400|ref|YP_753554.1| flagellar biosynthesis protein FliP [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337335|gb|ABI68183.1| flagellar biosynthetic protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 240 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 99/243 (40%), Positives = 152/243 (62%), Gaps = 9/243 (3%) Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSIS-----TWIVRTFGIFTILSIAPILLIMVTCF 62 L LV P V A+ +N+ + ++ + T+L++AP +LIM+T F Sbjct: 1 MLLLVFPGTVAAEPLQLPNLNLQIGGGAGEPQDLSVALQLIILITVLTLAPAILIMLTSF 60 Query: 63 PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122 R ++V + +RT + +PPN ++I +ALF+TF+VM+PT +QP +IT+ Sbjct: 61 TRIMVVLAFIRTSLATQQMPPNQLLIGMALFLTFFVMAPTFQEVNSQALQPYFKGKITQE 120 Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182 A ++ P FM TREKDL+LF+ M+ + I +LIPSF+ISEL+ Sbjct: 121 QAFEKGMNPLRSFMFKQTREKDLALFVKMSKMERPH----NFKDIPNYVLIPSFVISELK 176 Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242 +F+IGF+I +PFLIIDM+VA+ +M+MGMMMLPP ISLPFK++ FVL+DGW+L++++L+ Sbjct: 177 TAFQIGFIIFIPFLIIDMVVASALMSMGMMMLPPMMISLPFKILLFVLVDGWNLVIQSLI 236 Query: 243 KSF 245 SF Sbjct: 237 LSF 239 >gi|116328498|ref|YP_798218.1| flagellar biosynthesis protein FliP [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331228|ref|YP_800946.1| flagellar biosynthesis protein FliP [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121242|gb|ABJ79285.1| Endoflagellar biosynthesis pathway protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124917|gb|ABJ76188.1| Endoflagellar biosynthesis pathway protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 260 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 144/226 (63%), Gaps = 7/226 (3%) Query: 23 LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82 L+ +N ++ + + TILS+AP +++ +T F + +IV +R + + ++P Sbjct: 38 LNINVNEANSPRETSLSLMVLFLVTILSLAPAIVMSLTSFTKIVIVLDFVRRALSIQNLP 97 Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN--- 139 PN V++ LALFMTF++M+PTL+ E + P + +I + ++ P FM Sbjct: 98 PNQVMMGLALFMTFFIMAPTLNTVNERALAPYLEGKIDTNSFFEKGMVPIREFMMRQIGT 157 Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199 + KD++LF+ + + ++ D + +LIP+FM+SE++++F IG +I +PF++ID Sbjct: 158 SGAKDVALFLKI----GKVEEVESFDDVPSYVLIPAFMLSEIKKAFWIGIIIFIPFIVID 213 Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++VA+ +++MG+MMLPP +SLPFK+I FVL+DGW+L+V LV+S+ Sbjct: 214 LVVASALLSMGLMMLPPVMVSLPFKLILFVLVDGWNLIVYELVRSY 259 >gi|216264896|ref|ZP_03436888.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 156a] gi|221217753|ref|ZP_03589221.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 72a] gi|223888889|ref|ZP_03623480.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 64b] gi|224533771|ref|ZP_03674359.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi CA-11.2a] gi|225549012|ref|ZP_03769987.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 94a] gi|225550173|ref|ZP_03771133.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 118a] gi|215981369|gb|EEC22176.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 156a] gi|221192430|gb|EEE18649.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 72a] gi|223885705|gb|EEF56804.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 64b] gi|224513064|gb|EEF83427.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi CA-11.2a] gi|225369285|gb|EEG98738.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 118a] gi|225370238|gb|EEG99676.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 94a] gi|312148186|gb|ADQ30845.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi JD1] Length = 254 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 83/258 (32%), Positives = 139/258 (53%), Gaps = 16/258 (6%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNI---------PADLSISTWIVRTFGIFTILSI 51 M + F LF L FA++ N S + ++ + TI+++ Sbjct: 1 MRKCFNFFLFFSVTSLSFAQTKSLQTTNGLNFPFLNFDSIGGSEIAFSLQLLILLTIITL 60 Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 +P L+++T F R IV +R + + PP +++ LALF+T + M PT + E Sbjct: 61 SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNSIYEQAY 120 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNT---REKDLSLFMDMAHSSHRNTDITKNDHIE 168 PL ++I + P +FM R +++ LFM M++ + Sbjct: 121 LPLKESKINFNEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSMSNYDRPR----NFSEVP 176 Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP ISLPFK+I F Sbjct: 177 THVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLILF 236 Query: 229 VLIDGWSLLVENLVKSFI 246 V++DGW+L+ L+KSF+ Sbjct: 237 VMVDGWTLITSGLIKSFM 254 >gi|253988529|ref|YP_003039885.1| type III secretion system protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211637889|emb|CAR66518.1| type iii secretion component protein sctr [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779979|emb|CAQ83140.1| type iii secretion component protein sctr [Photorhabdus asymbiotica] Length = 217 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 71/208 (34%), Positives = 122/208 (58%), Gaps = 2/208 (0%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + +LS+ P + +M T F + +VFS+LR +G+ +PPN+ + LA+ +T YVM Sbjct: 8 LDLIIGLALLSLLPFIAVMATSFLKLAVVFSLLRNALGVQQIPPNMAMYGLAIILTIYVM 67 Query: 100 SPT--LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +P + + +N + ++ P+ F++ + + + + F+D Sbjct: 68 APVGFATQDYLRQNEVSFSNAQSVEKFLEEGMAPYRNFLKQHIKSSERTFFIDSTRQIWP 127 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + + + IL+P+F +SEL R+FEIGFL+ LPF+ ID+I++ I++AMGMMM+ P Sbjct: 128 SQYANRLEPDSLLILLPAFTVSELTRAFEIGFLLYLPFIAIDLIISNILLAMGMMMVSPM 187 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 +ISLPFK++ FVL+DGW+ L LV S+ Sbjct: 188 TISLPFKLLLFVLLDGWTRLTHGLVISY 215 >gi|107101125|ref|ZP_01365043.1| hypothetical protein PaerPA_01002157 [Pseudomonas aeruginosa PACS2] Length = 217 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 72/196 (36%), Positives = 117/196 (59%), Gaps = 2/196 (1%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT--LDRSIEM 109 P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ YVM+P R Sbjct: 20 VPFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLR 79 Query: 110 GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169 +N+ + + P+ F++ +E++ + FM+ + + D Sbjct: 80 NHDVSLNDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSL 139 Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229 IL+P+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P +ISLPFK++ FV Sbjct: 140 LILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISLPFKLLLFV 199 Query: 230 LIDGWSLLVENLVKSF 245 L+DGW+ L LV S+ Sbjct: 200 LLDGWARLTHGLVISY 215 >gi|195941371|ref|ZP_03086753.1| flagellar biosynthesis protein FliP [Borrelia burgdorferi 80a] gi|224533102|ref|ZP_03673702.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi WI91-23] gi|224511829|gb|EEF82230.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi WI91-23] Length = 254 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 83/258 (32%), Positives = 139/258 (53%), Gaps = 16/258 (6%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNI---------PADLSISTWIVRTFGIFTILSI 51 M + F LF L FA++ N S + ++ + TI+++ Sbjct: 1 MRKCFNFFLFFSVTSLSFAQTKSLQTTNGLNFPFLNFDSIGGSEIAFSLQLLILLTIITL 60 Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 +P L+++T F R IV +R + + PP +++ LALF+T + M PT + E Sbjct: 61 SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNSIYEQAY 120 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNT---REKDLSLFMDMAHSSHRNTDITKNDHIE 168 PL ++I + P +FM R +++ LFM M++ + Sbjct: 121 LPLKESKINFNEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSMSNYDRPK----NFSEVP 176 Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP ISLPFK+I F Sbjct: 177 THVLIVAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLILF 236 Query: 229 VLIDGWSLLVENLVKSFI 246 V++DGW+L+ L+KSF+ Sbjct: 237 VMVDGWTLITSGLIKSFM 254 >gi|216264092|ref|ZP_03436086.1| flagellar biosynthetic protein FliP [Borrelia afzelii ACA-1] gi|215980136|gb|EEC20958.1| flagellar biosynthetic protein FliP [Borrelia afzelii ACA-1] Length = 254 Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 80/258 (31%), Positives = 138/258 (53%), Gaps = 16/258 (6%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPA---------DLSISTWIVRTFGIFTILSI 51 M + F LF + FA++ N S + ++ + TI+++ Sbjct: 1 MRKCFNFFLFFGVTSVSFAQTKSLQATNGLNFPFLNFENIGGSEIAFSLQLLILLTIITL 60 Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 +P L+++T F R IV +R + + PP +++ LALF+T + M PT + + Sbjct: 61 SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNVIYKQAY 120 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNT---REKDLSLFMDMAHSSHRNTDITKNDHIE 168 PL ++I + P +FM R +++ LFM ++ + Sbjct: 121 LPLKESKINFDEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSISSYDRPK----NFSEVP 176 Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP ISLPFK+I F Sbjct: 177 THVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLILF 236 Query: 229 VLIDGWSLLVENLVKSFI 246 V++DGW+L+ L+KSF+ Sbjct: 237 VMVDGWTLITSGLIKSFM 254 >gi|319787090|ref|YP_004146565.1| flagellar biosynthetic protein FliP [Pseudoxanthomonas suwonensis 11-1] gi|317465602|gb|ADV27334.1| flagellar biosynthetic protein FliP [Pseudoxanthomonas suwonensis 11-1] Length = 257 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 85/222 (38%), Positives = 130/222 (58%), Gaps = 4/222 (1%) Query: 24 HDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPP 83 DV + + ++T + T +++ P LL+++TCF R IIV ++LR MG G P Sbjct: 37 PDVTVGQIGDNPISVPLQTLLLMTGITLLPSLLLVMTCFTRIIIVMALLRQAMGTGQTPS 96 Query: 84 NLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREK 143 N +++ L+LF+T +M P ++ + G P +N +I +A P FM RE Sbjct: 97 NQILVGLSLFLTAMIMMPVWQKAWDAGFAPYLNGEIDFRSAWDLGTAPLRAFMLAQVRET 156 Query: 144 DLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVA 203 DL F +A + + + + +L SF+ SEL+ +FEIGFLI +PF+IID++VA Sbjct: 157 DLMTFAGLAG----HDTYASPEAVPFPVLAASFVTSELKTAFEIGFLIFIPFVIIDLVVA 212 Query: 204 TIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +++M+MGMMML P IS PFK++ FVL+DGW L V L SF Sbjct: 213 SVLMSMGMMMLSPMLISAPFKILLFVLVDGWVLTVGTLAASF 254 >gi|330809248|ref|YP_004353710.1| flagellar biosynthetic protein fliP [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377356|gb|AEA68706.1| Putative flagellar biosynthetic protein fliP [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 240 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 82/204 (40%), Positives = 133/204 (65%), Gaps = 4/204 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V + T LS P L+I +T F R I+V S+ R +G+ PPN+V+I L++F+T + M Sbjct: 38 VSIVALLTALSFLPFLVISLTTFTRNIVVLSLARQALGLQQTPPNIVLIVLSMFLTLFAM 97 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +PTL+++ + GI+P + N++ A + P FM T E+DL L ++A Sbjct: 98 APTLEKAYDAGIKPFLANKVGLDGAALQGWVPIRDFMIRQTHEEDLRLIYELAKDPLPQA 157 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + L+P+FM+SEL+ +F+IGF+I LPFLIID++VA+I+M++GM+M+PP +I Sbjct: 158 ----PEGLSPVKLVPAFMLSELKLAFQIGFMIFLPFLIIDLVVASILMSLGMIMVPPITI 213 Query: 220 SLPFKVIFFVLIDGWSLLVENLVK 243 SLP K++ F+LIDGW L+ + L++ Sbjct: 214 SLPLKIMLFLLIDGWGLIAQTLMR 237 >gi|160902840|ref|YP_001568421.1| flagellar biosynthesis protein FliP [Petrotoga mobilis SJ95] gi|160360484|gb|ABX32098.1| flagellar biosynthetic protein FliP [Petrotoga mobilis SJ95] Length = 249 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 90/249 (36%), Positives = 149/249 (59%), Gaps = 14/249 (5%) Query: 7 FALFLVTPELVFAKSSLHD-----VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61 LF++ LVF+++++ +N +++ T + I T+LS+AP L++ T Sbjct: 4 LILFILAFSLVFSQNTVQLPGVDIQINPNEEVNTLTPTLTILLIVTVLSLAPGFLMLFTS 63 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F R ++V S LR MG PPN V+++LALF+T +M P + + I P N+I+ Sbjct: 64 FTRIVVVLSFLRQAMGTRQAPPNQVMLALALFLTIMIMFPVFNGVYQEAIIPYNQNEISY 123 Query: 122 TTAIQRVAEPFWVFMRN----NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177 AIQ F FM + + E D+ + SS N +I + ++IL+P+F Sbjct: 124 EEAIQISWLQFKDFMISEIVAHKNEDDIYML-----SSSMNVEIDNIEETPFQILVPAFA 178 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 ISEL +F++ L+ LPF+I+DM+VA+I+++MGM+M+PP ISLPFK++ FV+++GW L+ Sbjct: 179 ISELEIAFKMSILLYLPFIIVDMVVASILLSMGMIMIPPILISLPFKIMIFVMVNGWDLI 238 Query: 238 VENLVKSFI 246 + LV+SF+ Sbjct: 239 IGGLVRSFV 247 >gi|119953074|ref|YP_945283.1| flagellar biosynthesis protein FliP [Borrelia turicatae 91E135] gi|119861845|gb|AAX17613.1| flagellar biosynthetic protein FliP [Borrelia turicatae 91E135] Length = 256 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 76/198 (38%), Positives = 120/198 (60%), Gaps = 7/198 (3%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 +P L+++T F R IV +R + + PPN VI+ LALF+T + M PT + + Sbjct: 63 SPAFLVLMTSFLRIAIVLDFIRRALSLQQSPPNQVIMGLALFLTLFTMWPTFNIIYKEAY 122 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRN---NTREKDLSLFMDMAHSSHRNTDITKNDHIE 168 PL +++I R P FM N++ +++ LFM +++ + Sbjct: 123 LPLQDSKIGFNEFYDRGIAPLRNFMYKQMSNSKHEEIRLFMSISNYPRPK----NFSEVP 178 Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 +LI SF++ EL+ +F++G LI LPF++ID+IVA ++MAMGM+MLPP ISLPFK++ F Sbjct: 179 THVLIASFVLHELKVAFKMGILIFLPFIVIDIIVAAVLMAMGMIMLPPVMISLPFKLMLF 238 Query: 229 VLIDGWSLLVENLVKSFI 246 V++DGW+L+ LVKSF+ Sbjct: 239 VMVDGWTLITSGLVKSFM 256 >gi|296389923|ref|ZP_06879398.1| type III secretion system protein [Pseudomonas aeruginosa PAb1] Length = 219 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 71/196 (36%), Positives = 117/196 (59%), Gaps = 2/196 (1%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT--LDRSIEM 109 P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ YVM+P R Sbjct: 20 VPFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLR 79 Query: 110 GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169 +++ + + P+ F++ +E++ + FM+ + + D Sbjct: 80 NHDVSLSDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSL 139 Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229 IL+P+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P +ISLPFK++ FV Sbjct: 140 LILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISLPFKLLLFV 199 Query: 230 LIDGWSLLVENLVKSF 245 L+DGW+ L LV S+ Sbjct: 200 LLDGWARLTHGLVISY 215 >gi|225552062|ref|ZP_03773002.1| flagellar biosynthetic protein FliP [Borrelia sp. SV1] gi|225371060|gb|EEH00490.1| flagellar biosynthetic protein FliP [Borrelia sp. SV1] Length = 254 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 83/258 (32%), Positives = 139/258 (53%), Gaps = 16/258 (6%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNI---------PADLSISTWIVRTFGIFTILSI 51 M + F LF L FA++ N S + ++ + TI+++ Sbjct: 1 MRKCFNFFLFFSVTSLSFAQTKSLQTTNGLNFPFLNFDSIGGSEIAFSLQLLILLTIITL 60 Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 +P L+++T F R IV +R + + PP +++ LALF+T + M PT + E Sbjct: 61 SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNSMYEQAY 120 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNT---REKDLSLFMDMAHSSHRNTDITKNDHIE 168 PL ++I + P +FM R +++ LFM M++ + Sbjct: 121 LPLKESKINFNEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSMSNYDRPK----NFSEVP 176 Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP ISLPFK+I F Sbjct: 177 THVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLILF 236 Query: 229 VLIDGWSLLVENLVKSFI 246 V++DGW+L+ L+KSF+ Sbjct: 237 VMVDGWTLITSGLIKSFM 254 >gi|219684692|ref|ZP_03539635.1| flagellar biosynthetic protein FliP [Borrelia garinii PBr] gi|219685749|ref|ZP_03540560.1| flagellar biosynthetic protein FliP [Borrelia garinii Far04] gi|219672054|gb|EED29108.1| flagellar biosynthetic protein FliP [Borrelia garinii PBr] gi|219672688|gb|EED29716.1| flagellar biosynthetic protein FliP [Borrelia garinii Far04] Length = 254 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 70/198 (35%), Positives = 118/198 (59%), Gaps = 7/198 (3%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 +P L+++T F R IV +R + + PP +++ LALF+T + M PT + + Sbjct: 61 SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNVIYKQAY 120 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNT---REKDLSLFMDMAHSSHRNTDITKNDHIE 168 PL ++I + P +FM R +++ LFM +++ + Sbjct: 121 LPLKESKINFDEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSISNYDRPK----NFSEVP 176 Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP ISLPFK+I F Sbjct: 177 THVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLILF 236 Query: 229 VLIDGWSLLVENLVKSFI 246 V++DGW+L+ L+KSF+ Sbjct: 237 VMVDGWTLITSGLIKSFM 254 >gi|49078404|gb|AAT49781.1| PA1693 [synthetic construct] Length = 218 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 71/196 (36%), Positives = 117/196 (59%), Gaps = 2/196 (1%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT--LDRSIEM 109 P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ YVM+P R Sbjct: 20 VPFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLR 79 Query: 110 GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169 +++ + + P+ F++ +E++ + FM+ + + D Sbjct: 80 NHDVSLSDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSL 139 Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229 IL+P+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P +ISLPFK++ FV Sbjct: 140 LILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISLPFKLLLFV 199 Query: 230 LIDGWSLLVENLVKSF 245 L+DGW+ L LV S+ Sbjct: 200 LLDGWARLTHGLVISY 215 >gi|84621752|ref|YP_449124.1| type III secretion system protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188574345|ref|YP_001911274.1| type III secretion system protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|7288131|dbj|BAA92826.1| hrpD2 [Xanthomonas oryzae pv. oryzae] gi|50428356|dbj|BAD29993.1| HrcR [Xanthomonas oryzae pv. oryzae] gi|84365692|dbj|BAE66850.1| HrcR protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188518797|gb|ACD56742.1| type III secretion apparatus protein, YscR/HrcR family [Xanthomonas oryzae pv. oryzae PXO99A] Length = 214 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 116/205 (56%), Gaps = 1/205 (0%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 + +L + P ++VT + + ++V +LR +G+ VPPN+V+ +AL ++ +VM+P Sbjct: 9 LLLVVIMLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAP 68 Query: 102 TLDRSIEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD 160 + + + + + EPF F+ +T E++ + FM A Sbjct: 69 VGMEAFKAAQNYGAGSDNSRIVVLLDACREPFRQFLLKHTPEREKAFFMRSAQQIWPKDK 128 Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220 T + IL P+F +SEL +F IGFL+ L F++ID++VA +MAMG+ + PT+++ Sbjct: 129 ATTLKSDDLLILAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVA 188 Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245 +PFK++ FV +DGWS+L+ LV S+ Sbjct: 189 IPFKLLLFVAMDGWSMLIHGLVLSY 213 >gi|319795616|ref|YP_004157256.1| yop virulence translocation r [Variovorax paradoxus EPS] gi|315598079|gb|ADU39145.1| Yop virulence translocation R [Variovorax paradoxus EPS] Length = 219 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 71/210 (33%), Positives = 122/210 (58%), Gaps = 4/210 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + + L + +MVT + + IIVF +LRT +G+ PPN+V+ +A+ ++ Y+M Sbjct: 9 ITIVALILALGVTSFAALMVTSYTKLIIVFGLLRTALGLQQTPPNMVLNGIAIILSVYIM 68 Query: 100 SPTLDRSIEMGIQPLMNNQI----TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSS 155 +P + + + I P F++ +TRE++ F+ A S Sbjct: 69 APVGMEVGDALRNRTLGQKGEGLNDIVAVIDAAKVPLKEFLQKHTRERERQFFLKSASSM 128 Query: 156 HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215 + ++ +L+PSF +SEL R+F+IGF+I L F+++D+IVAT+++A+GM M+ Sbjct: 129 WPQARAAQLQPDDFMVLVPSFTLSELTRAFQIGFVIYLVFVVVDLIVATVLLALGMSMIA 188 Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 PT+ISLPFK++ FV++DGW+ LV LV S+ Sbjct: 189 PTTISLPFKLLLFVMLDGWTRLVHGLVLSY 218 >gi|329897649|ref|ZP_08272173.1| Flagellar biosynthesis protein fliP [gamma proteobacterium IMCC3088] gi|328921098|gb|EGG28507.1| Flagellar biosynthesis protein fliP [gamma proteobacterium IMCC3088] Length = 250 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 91/247 (36%), Positives = 152/247 (61%), Gaps = 5/247 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIM 58 +I+ L ++ ++ F++ ++ V + + + + + G+ TIL++ P LL+M Sbjct: 4 LIKPGLSLLLVLFADVSFSQGTIPIVTSNALQNGQTEYSITLQLLGLMTILTLLPSLLLM 63 Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R IIV S+LR MG PPN V++ LALF+T ++M+P E IQP +N++ Sbjct: 64 MTSFTRIIIVLSLLRQAMGTAQTPPNQVLLGLALFLTIFIMTPVATVVNEEAIQPYVNSE 123 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 I A+ R P F+ TRE D+ F+ + + + + + IL+P+F+ Sbjct: 124 IGLEDALLRAQVPIKTFLLQQTRESDIQTFISLLN---DDVQYNTPNDLPLNILVPAFIA 180 Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238 SEL+ +F IGF++ +PF++ID++VA+I+M+MGMMML P ISLPFK++ FV++DGW+LL+ Sbjct: 181 SELKSAFTIGFMLYIPFVVIDLVVASILMSMGMMMLSPMMISLPFKLLLFVMVDGWNLLI 240 Query: 239 ENLVKSF 245 +L SF Sbjct: 241 GSLAGSF 247 >gi|237678817|emb|CAQ57544.1| RHCR protein [Bradyrhizobium elkanii] Length = 221 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 77/213 (36%), Positives = 116/213 (54%), Gaps = 2/213 (0%) Query: 35 ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFM 94 I I+ I L + ++ T F + +V ++R +G S+PPN+V+ AL + Sbjct: 4 IQPSILALLAITVGLGLLAFAVVTTTAFIKVSVVLFLVRNALGTQSIPPNIVLYGAALIL 63 Query: 95 TFYVMSPTLDRSIEMGIQPLMNNQI--TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152 T ++ +P +++ P + Q TA + EP ++ T E+ F+ A Sbjct: 64 TVFISAPVFEQTYNRLTDPQLRYQTFDDWVTAAKEGQEPLRAHLKKFTNEEQRRFFLSSA 123 Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 ++ IL+PSF+ISEL+R FEIGFL+ LPF+ ID+IV TI+MAMGM Sbjct: 124 EHVWSEEMRGSATADDFVILVPSFLISELKRGFEIGFLLYLPFITIDLIVTTILMAMGMS 183 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+ PT IS+PFK+ FV IDGWS L+ LV S+ Sbjct: 184 MVSPTVISVPFKLFLFVTIDGWSRLMHGLVLSY 216 >gi|149184188|ref|ZP_01862506.1| flagellar biosynthetic protein FliP [Erythrobacter sp. SD-21] gi|148831508|gb|EDL49941.1| flagellar biosynthetic protein FliP [Erythrobacter sp. SD-21] Length = 255 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 80/188 (42%), Positives = 127/188 (67%), Gaps = 4/188 (2%) Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 M+T F R I+V +ILR +G+ PPN V+I ++LF++ ++M+PTL+R E I P Sbjct: 71 MMTSFTRIIVVLAILRQALGLQQSPPNQVLIGISLFLSLFIMTPTLERVNEAAIAPYSAG 130 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177 +I AI+R + F FM TRE DL +F D+A + + + IL+P+F+ Sbjct: 131 EIGAEVAIERAGDQFHAFMIRQTREYDLEMFADIAGAGQ----FASPQDVPFSILLPAFV 186 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 SEL+ +F+IGF++ LPFL+ID++V++++M++GMMM+ P +SLPFK++ FVL+DGW+LL Sbjct: 187 TSELKTAFQIGFMLFLPFLVIDLVVSSVLMSLGMMMMSPMMVSLPFKLLLFVLVDGWALL 246 Query: 238 VENLVKSF 245 + +L SF Sbjct: 247 MGSLAASF 254 >gi|51598535|ref|YP_072723.1| flagellar biosynthesis protein FliP [Borrelia garinii PBi] gi|51573106|gb|AAU07131.1| flagellar biosynthesis protein [Borrelia garinii PBi] Length = 254 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 70/198 (35%), Positives = 118/198 (59%), Gaps = 7/198 (3%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 +P L+++T F R IV +R + + PP +++ LALF+T + M PT + + Sbjct: 61 SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNVIYKQAY 120 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNT---REKDLSLFMDMAHSSHRNTDITKNDHIE 168 PL ++I + P +FM R +++ LFM +++ + Sbjct: 121 LPLKESKINFDEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSISNYDRPK----NFSEVP 176 Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP ISLPFK+I F Sbjct: 177 THVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLILF 236 Query: 229 VLIDGWSLLVENLVKSFI 246 V++DGW+L+ L+KSF+ Sbjct: 237 VMVDGWTLITSGLIKSFM 254 >gi|15596890|ref|NP_250384.1| type III secretion system protein [Pseudomonas aeruginosa PAO1] gi|116049643|ref|YP_791552.1| type III secretion system protein [Pseudomonas aeruginosa UCBPP-PA14] gi|254234792|ref|ZP_04928115.1| translocation protein in type III secretion [Pseudomonas aeruginosa C3719] gi|254240038|ref|ZP_04933360.1| translocation protein in type III secretion [Pseudomonas aeruginosa 2192] gi|313110379|ref|ZP_07796268.1| LOW QUALITY PROTEIN: translocation protein in type III secretion [Pseudomonas aeruginosa 39016] gi|9947666|gb|AAG05082.1|AE004596_8 translocation protein in type III secretion [Pseudomonas aeruginosa PAO1] gi|115584864|gb|ABJ10879.1| translocation protein in type III secretion [Pseudomonas aeruginosa UCBPP-PA14] gi|126166723|gb|EAZ52234.1| translocation protein in type III secretion [Pseudomonas aeruginosa C3719] gi|126193416|gb|EAZ57479.1| translocation protein in type III secretion [Pseudomonas aeruginosa 2192] gi|310882770|gb|EFQ41364.1| LOW QUALITY PROTEIN: translocation protein in type III secretion [Pseudomonas aeruginosa 39016] Length = 217 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 71/196 (36%), Positives = 117/196 (59%), Gaps = 2/196 (1%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT--LDRSIEM 109 P + +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ YVM+P R Sbjct: 20 VPFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLR 79 Query: 110 GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169 +++ + + P+ F++ +E++ + FM+ + + D Sbjct: 80 NHDVSLSDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSL 139 Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229 IL+P+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P +ISLPFK++ FV Sbjct: 140 LILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISLPFKLLLFV 199 Query: 230 LIDGWSLLVENLVKSF 245 L+DGW+ L LV S+ Sbjct: 200 LLDGWARLTHGLVISY 215 >gi|111115100|ref|YP_709718.1| flagellar biosynthesis protein FliP [Borrelia afzelii PKo] gi|110890374|gb|ABH01542.1| flagellar biosynthesis protein [Borrelia afzelii PKo] Length = 254 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 79/258 (30%), Positives = 137/258 (53%), Gaps = 16/258 (6%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPA---------DLSISTWIVRTFGIFTILSI 51 M + F LF + FA++ N S + ++ + TI+++ Sbjct: 1 MRKCFNFFLFFGVTSVSFAQTKSLQATNGLNFPFLNFENIGGSEIAFSLQLLILLTIITL 60 Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 +P L+++T F R IV +R + + PP +++ LALF+T + M PT + + Sbjct: 61 SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNVIYKQAY 120 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNT---REKDLSLFMDMAHSSHRNTDITKNDHIE 168 PL ++I + P +FM R +++ LFM ++ + Sbjct: 121 LPLKESKINFDEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSISSYDRPK----NFSEVP 176 Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP ISLP K+I F Sbjct: 177 THVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPLKLILF 236 Query: 229 VLIDGWSLLVENLVKSFI 246 V++DGW+L+ L+KSF+ Sbjct: 237 VMVDGWTLITSGLIKSFM 254 >gi|22124444|ref|NP_667867.1| type III secretion system protein [Yersinia pestis KIM 10] gi|108810002|ref|YP_653918.1| type III secretion system protein [Yersinia pestis Antiqua] gi|108813557|ref|YP_649324.1| type III secretion system protein [Yersinia pestis Nepal516] gi|145600947|ref|YP_001165023.1| type III secretion system protein [Yersinia pestis Pestoides F] gi|161511452|ref|NP_991819.2| type III secretion system protein [Yersinia pestis biovar Microtus str. 91001] gi|161760592|ref|YP_068873.2| type III secretion system protein [Yersinia pseudotuberculosis IP 32953] gi|165936558|ref|ZP_02225126.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia pestis biovar Orientalis str. IP275] gi|170026115|ref|YP_001722620.1| type III secretion system protein [Yersinia pseudotuberculosis YPIII] gi|186893685|ref|YP_001870797.1| type III secretion system protein [Yersinia pseudotuberculosis PB1/+] gi|21957231|gb|AAM84118.1|AE013654_7 putative type III secretion system component [Yersinia pestis KIM 10] gi|108777205|gb|ABG19724.1| type III secretion apparatus protein [Yersinia pestis Nepal516] gi|108781915|gb|ABG15973.1| putative type III secretion apparatus protein [Yersinia pestis Antiqua] gi|145212643|gb|ABP42050.1| type III secretion apparatus protein [Yersinia pestis Pestoides F] gi|165915674|gb|EDR34283.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia pestis biovar Orientalis str. IP275] gi|169752649|gb|ACA70167.1| Yop virulence translocation R [Yersinia pseudotuberculosis YPIII] gi|186696711|gb|ACC87340.1| Yop virulence translocation R [Yersinia pseudotuberculosis PB1/+] Length = 236 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 74/208 (35%), Positives = 123/208 (59%), Gaps = 2/208 (0%) Query: 41 RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100 + + +LS+ P+L++M T F + +VFS+LR +G+ VPPN+ I LAL +T ++M+ Sbjct: 29 QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA 88 Query: 101 PTLDRSIEMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 P ++N I Q P+ F++ NT + ++ F D+ + Sbjct: 89 PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE 148 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 IL+P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P + Sbjct: 149 RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT 208 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +SLPFK++ FVL+DGWSL++ LV S++ Sbjct: 209 LSLPFKLLVFVLVDGWSLVLGQLVGSYL 236 >gi|224534252|ref|ZP_03674830.1| flagellar biosynthetic protein FliP [Borrelia spielmanii A14S] gi|224514354|gb|EEF84670.1| flagellar biosynthetic protein FliP [Borrelia spielmanii A14S] Length = 254 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 81/258 (31%), Positives = 138/258 (53%), Gaps = 16/258 (6%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPA---------DLSISTWIVRTFGIFTILSI 51 M + F LF L FA++ N S + ++ + TI+++ Sbjct: 1 MRKCFIFFLFFSVTSLSFAQTKSFQSTNGLNFPFLNFENISGSEIAFSLQLLILLTIITL 60 Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 +P L+++T F R IV +R + + PP +++ LALF+T + M PT + + Sbjct: 61 SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNVIYKQAY 120 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNT---REKDLSLFMDMAHSSHRNTDITKNDHIE 168 PL ++I + P +FM R +++ LFM ++ + Sbjct: 121 LPLKESKINFDEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSISSYDRPK----NFSEVP 176 Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP ISLPFK+I F Sbjct: 177 THVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLILF 236 Query: 229 VLIDGWSLLVENLVKSFI 246 V++DGW+L+ L+KSF+ Sbjct: 237 VMVDGWTLITSGLIKSFM 254 >gi|329889296|ref|ZP_08267639.1| hypothetical protein BDIM_09760 [Brevundimonas diminuta ATCC 11568] gi|328844597|gb|EGF94161.1| hypothetical protein BDIM_09760 [Brevundimonas diminuta ATCC 11568] Length = 219 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 78/208 (37%), Positives = 125/208 (60%), Gaps = 4/208 (1%) Query: 43 FGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT 102 +L++AP + +MVT F + ++V S+LR +G+ VPPN+V+ +AL +T YVM P Sbjct: 12 LVTVILLALAPFVAVMVTSFTKIVVVLSLLRNALGLQQVPPNIVLNGMALILTLYVMFPV 71 Query: 103 LDRSIEMGIQPLMNNQITETTAI----QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 R E +++T + EP F+ ++ E++ + F+ A Sbjct: 72 GQRMAEATNHMPPTAALSDTQQLFAYADSAKEPLRDFLIKHSSERERAFFLRTAQRISTP 131 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 + ++ +++P+F +SEL +F+IGFLI LPFLIID++V+ I++AMGMMML PT+ Sbjct: 132 EKRAEITARDFLVVVPAFTVSELATAFQIGFLIFLPFLIIDLVVSNILLAMGMMMLSPTT 191 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +SLPFK++ FVLIDGW L LV S++ Sbjct: 192 VSLPFKLLLFVLIDGWVKLSHGLVLSYV 219 >gi|152990381|ref|YP_001356103.1| flagellar transport protein FliP [Nitratiruptor sp. SB155-2] gi|151422242|dbj|BAF69746.1| flagellar transport protein FliP [Nitratiruptor sp. SB155-2] Length = 236 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 94/245 (38%), Positives = 162/245 (66%), Gaps = 10/245 (4%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 M ++ F+ P +FA + ++ +++ ++ + ++ +FTILS+AP +LI +T Sbjct: 1 MRKFLLLLPFIGIP--LFAANEINALLDQLKNVDTT---LKILALFTILSLAPAILITMT 55 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R +IV +LR +G+ PPN VII+L+LF+TF++M P D+ +QP M +++ Sbjct: 56 SFTRIVIVLGLLRQALGIPQSPPNQVIIALSLFLTFFIMKPVFDQIYVDAVQPYMQHKLN 115 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 + A++ P F+ NNT++++L LF+D+ ++ + + I +L+P+F++SE Sbjct: 116 DMQAVEAAMRPIKKFLVNNTQKEELKLFLDINKTTPK-----DYNDISLSVLLPAFLVSE 170 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 ++ +FEI F+I LPFL+IDM+VA+I+M+MGMMM+PP ISLPFK+I F+L DGW LL++ Sbjct: 171 IKIAFEIAFVIFLPFLVIDMLVASILMSMGMMMIPPMMISLPFKLILFILSDGWELLIKA 230 Query: 241 LVKSF 245 L+K + Sbjct: 231 LIKGY 235 >gi|282891201|ref|ZP_06299704.1| type III secretion inner membrane protein SctR [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498894|gb|EFB41210.1| type III secretion inner membrane protein SctR [Parachlamydia acanthamoebae str. Hall's coccus] Length = 319 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 66/218 (30%), Positives = 127/218 (58%), Gaps = 11/218 (5%) Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98 ++ + TILS+ P +++++T F + +IV S+LR+ +G+ PPN +I +A ++ ++ Sbjct: 101 LITQAIVLTILSLLPFIIMILTSFLKIVIVLSLLRSALGVQQAPPNQIINGVAFMLSLFI 160 Query: 99 MSPTLDRSIEMGIQPLMNNQITET-----------TAIQRVAEPFWVFMRNNTREKDLSL 147 M PT+ + + + + + ++ EP +F++ N+ K +L Sbjct: 161 MYPTVLKMYDAAQSVIESTRAPDSLVSVESSKYIVDVADASKEPLRMFLKRNSSVKHQAL 220 Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 F MA+ ++ I++P+++ S+L+ +FEIG LI +PF +ID++ + I++ Sbjct: 221 FYRMAYRILPENYRATLKPDDFMIVVPAYITSQLKDAFEIGVLIYIPFFVIDLVTSNILL 280 Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 AMGMMML P +IS+P K+ V++DGW+LL++ LV +F Sbjct: 281 AMGMMMLSPVTISMPLKLFLLVMLDGWTLLIDGLVNTF 318 >gi|289670559|ref|ZP_06491634.1| flagellar biosynthesis protein FliP [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 276 Score = 175 bits (443), Expect = 7e-42, Method: Composition-based stats. Identities = 88/224 (39%), Positives = 132/224 (58%), Gaps = 4/224 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 SL +V + ++T + T +++ P +L+++T F R IV +LR +G G Sbjct: 54 SLPNVSVGRIGDQPVSLPLQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQT 113 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 P N V++ L++F+T VM P + G+QP +NNQI +TA +P FM R Sbjct: 114 PSNQVLLGLSMFLTALVMMPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIR 173 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 E DL F MA D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++ Sbjct: 174 ETDLMTFAGMAGDGK----YAGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLV 229 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 VA+++M+MGMMML P IS PFK++ F+L+DGW L+V L SF Sbjct: 230 VASVLMSMGMMMLSPMLISAPFKILLFILVDGWVLVVGTLAASF 273 >gi|330505666|ref|YP_004382535.1| flagellar biosynthesis protein FliP [Pseudomonas mendocina NK-01] gi|328919952|gb|AEB60783.1| flagellar biosynthesis protein FliP [Pseudomonas mendocina NK-01] Length = 250 Score = 174 bits (442), Expect = 8e-42, Method: Composition-based stats. Identities = 83/228 (36%), Positives = 126/228 (55%), Gaps = 4/228 (1%) Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 N D + ++ I T+L P LL+M+TCF RFIIV +ILR + Sbjct: 23 AAGGDITLFNFNDTEDGQTLSVKLQILLIMTLLGFLPALLMMMTCFTRFIIVLAILRQAI 82 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G+ PPN V+I +AL +T VM P P +QI+ + FM Sbjct: 83 GLQQSPPNPVLIGIALCLTLLVMRPVWQEMYTEAYVPFEADQISLEQGLGEGKRIISQFM 142 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 T + L + +A + +++ +L+P+F++SEL+ +F++GF+I +PFL Sbjct: 143 LAQTSKNSLETLVALADEEMPDDLAQ----LDFSLLLPAFVLSELKTAFQLGFMIFVPFL 198 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 +ID++VA+++MAMGMMML P ISLPFK++ FVL+DGW+LLV L S Sbjct: 199 VIDLVVASVLMAMGMMMLSPMMISLPFKLLVFVLVDGWTLLVGTLTTS 246 >gi|311232389|gb|ADP85243.1| flagellar biosynthetic protein FliP [Desulfovibrio vulgaris RCH1] Length = 232 Score = 174 bits (442), Expect = 9e-42, Method: Composition-based stats. Identities = 85/210 (40%), Positives = 134/210 (63%), Gaps = 4/210 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + + + T+LS+AP +++ VT F R IIVF +R +G+ ++PP+ V+ SLA+FMT Sbjct: 26 SLTLEILFMLTVLSLAPAIMLTVTSFTRIIIVFHFVRQALGVQALPPSQVLASLAIFMTV 85 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 +M+P + +QP + +I A+++ P FM +TREKDLS+F + Sbjct: 86 VIMTPVGKEINDNALQPYLREEIGFNEALKKAEAPMRTFMFKHTREKDLSVFYAVTKMEQ 145 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 D + +L ++ISEL+ F IGFLI +PFLI+DM++++I++AMGMMMLPP Sbjct: 146 PR----SKDDVPTIMLAAGYVISELKTGFTIGFLIYIPFLILDMVISSILLAMGMMMLPP 201 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +S+PFK++ FV++DGW LLV +LV SF+ Sbjct: 202 MMVSMPFKLLLFVMVDGWGLLVGSLVNSFM 231 >gi|167567944|ref|ZP_02360860.1| type III secretion system protein [Burkholderia oklahomensis EO147] gi|167573182|ref|ZP_02366056.1| type III secretion system protein [Burkholderia oklahomensis C6786] Length = 216 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 123/206 (59%), Gaps = 2/206 (0%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 I +S+ P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ + YVM+P Sbjct: 10 LLLIVVAISLLPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILASLYVMAP 69 Query: 102 TLDRSIE--MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 ++ + G Q + A+ EPF F+ +T+E++ F+ A Sbjct: 70 VGMQAAKSLDGQQLASQSSQALIQALSAAREPFRAFLEKHTQEREKRFFIRSATVIWPKD 129 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + ++ + +L P+F +SEL +F+IGFL+ + F+I+D+++A +++A+G+ + PT++ Sbjct: 130 EASRLSEHDLVVLAPAFALSELTDAFKIGFLLYITFIIVDLVIANVLLALGLNQVTPTNV 189 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 ++PFK++ FV++DGWS L+ LV ++ Sbjct: 190 AIPFKLLLFVVMDGWSALIHGLVMTY 215 >gi|46445836|ref|YP_007201.1| type III secretion system protein [Candidatus Protochlamydia amoebophila UWE25] gi|46399477|emb|CAF22926.1| putative type III secretion inner membrane protein SctR [Candidatus Protochlamydia amoebophila UWE25] Length = 323 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 59/204 (28%), Positives = 115/204 (56%), Gaps = 11/204 (5%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +++++T F + ++V S+LRT +G+ PPN +I +A ++ ++M PT + + Sbjct: 119 PFIIMILTSFLKIVVVLSLLRTALGVQQAPPNQIINGVAFLLSLFIMYPTAIKMYDAAQT 178 Query: 113 PLMNNQITET-----------TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161 + + E+ + P +++ N+ + +LF + + Sbjct: 179 AINQPNVPESFLSPGSSTYVIEVASAASGPMKEYLKRNSSSRHQALFYRLVYRGLPEDYR 238 Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221 ++ +L+PS++ +L+ +FEIG LI +PF +ID++ + I++AMGMMML P +IS+ Sbjct: 239 ETLKPDDFIVLVPSYITGQLKDAFEIGVLIYIPFFVIDLVTSNILLAMGMMMLSPVTISM 298 Query: 222 PFKVIFFVLIDGWSLLVENLVKSF 245 P K+ V++DGW++L+E LVK+F Sbjct: 299 PLKLFLLVMLDGWTILIEGLVKTF 322 >gi|254497497|ref|ZP_05110290.1| truncated flagellar biosynthesis protein FliP [Legionella drancourtii LLAP12] gi|254353312|gb|EET12054.1| truncated flagellar biosynthesis protein FliP [Legionella drancourtii LLAP12] Length = 189 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 84/191 (43%), Positives = 127/191 (66%), Gaps = 5/191 (2%) Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114 +L+ +T F R IIV SILR +G+ P N V+I +ALFMT++VM+PT ++ + +QP Sbjct: 1 MLMAMTAFTRIIIVLSILRQAIGLAQAPTNQVLIGIALFMTYFVMAPTFNKINDTALQPY 60 Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174 + I A+ EP FM N TR+ DL+LF A N + + ++IP Sbjct: 61 LAETIKFPQAMANAQEPLRDFMLNQTRKNDLALFEKFA-----NKQPASLNDVPMSVIIP 115 Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234 +F+ SEL+ +F+IGF++ LPFLIID++V++++MAMGMMML P ISLPFK++ FV++DGW Sbjct: 116 AFITSELKTAFQIGFILFLPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIMLFVMVDGW 175 Query: 235 SLLVENLVKSF 245 +L++ +L SF Sbjct: 176 TLILGSLASSF 186 >gi|27376930|ref|NP_768459.1| type III secretion system protein [Bradyrhizobium japonicum USDA 110] gi|12620526|gb|AAG60802.1|AF322012_107 RhcR [Bradyrhizobium japonicum] gi|27350072|dbj|BAC47084.1| RhcR protein [Bradyrhizobium japonicum USDA 110] Length = 221 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 76/213 (35%), Positives = 115/213 (53%), Gaps = 2/213 (0%) Query: 35 ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFM 94 I I+ I L + ++ T F + +V ++R +G S+PPN+V+ AL + Sbjct: 4 IQPSILALLAITVGLGLLAFAVVTTTAFIKVSVVLFLVRNALGTQSIPPNIVLYGAALIL 63 Query: 95 TFYVMSPTLDRSIEMGIQPLMNNQ--ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152 T ++ +P +++ P + Q A + EP V ++ T E+ F+ Sbjct: 64 TVFISAPVFEQTYNRLTDPQLRYQSFDDWVMAAKEGQEPLRVHLKKFTNEEQRRFFLSST 123 Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 ++ IL+PSF+ISEL+R FEIGFL+ LPF+ ID+IV TI+MAMGM Sbjct: 124 EHVWSEEMRGSVTADDFSILVPSFLISELKRGFEIGFLLYLPFITIDLIVTTILMAMGMS 183 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+ PT IS+PFK+ FV IDGWS L+ LV S+ Sbjct: 184 MVSPTVISVPFKLFLFVTIDGWSRLMHGLVLSY 216 >gi|53724243|ref|YP_104210.1| flagellar biosynthesis protein FliP [Burkholderia mallei ATCC 23344] gi|67641568|ref|ZP_00440344.1| flagellar biosynthetic protein FliP [Burkholderia mallei GB8 horse 4] gi|167001619|ref|ZP_02267413.1| flagellar biosynthetic protein FliP [Burkholderia mallei PRL-20] gi|254201283|ref|ZP_04907647.1| flagellar biosynthetic protein FliP [Burkholderia mallei FMH] gi|254206625|ref|ZP_04912976.1| flagellar biosynthetic protein FliP [Burkholderia mallei JHU] gi|254357358|ref|ZP_04973632.1| flagellar biosynthetic protein FliP [Burkholderia mallei 2002721280] gi|52427666|gb|AAU48259.1| flagellar biosynthetic protein FliP, interruption-C [Burkholderia mallei ATCC 23344] gi|147747177|gb|EDK54253.1| flagellar biosynthetic protein FliP [Burkholderia mallei FMH] gi|147752167|gb|EDK59233.1| flagellar biosynthetic protein FliP [Burkholderia mallei JHU] gi|148026422|gb|EDK84507.1| flagellar biosynthetic protein FliP [Burkholderia mallei 2002721280] gi|238522521|gb|EEP85965.1| flagellar biosynthetic protein FliP [Burkholderia mallei GB8 horse 4] gi|243062629|gb|EES44815.1| flagellar biosynthetic protein FliP [Burkholderia mallei PRL-20] Length = 175 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 79/177 (44%), Positives = 117/177 (66%), Gaps = 4/177 (2%) Query: 69 FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128 S+LR +G S PPN V++ LALF+T +VMSP LDR+ +P + A+QR Sbjct: 2 LSLLRQAIGTASTPPNQVLVGLALFLTLFVMSPVLDRAYNDAYKPFSEGTLQMDQAVQRG 61 Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188 PF FM TRE DL+LF ++ + + + + +L+P+F+ SEL+ F+IG Sbjct: 62 TAPFKAFMLKQTRETDLALFAKIS----KAAPMQGPEDVPLSLLVPAFVTSELKTGFQIG 117 Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 F I +PFLIIDM+VA+++M+MGMMM+ P ++SLPFK++ FVL+DGW LL+ +L +SF Sbjct: 118 FTIFIPFLIIDMVVASVLMSMGMMMVSPATVSLPFKLMLFVLVDGWQLLIGSLAQSF 174 >gi|146309436|ref|YP_001189901.1| flagellar biosynthesis protein FliP [Pseudomonas mendocina ymp] gi|145577637|gb|ABP87169.1| flagellar biosynthetic protein FliP [Pseudomonas mendocina ymp] Length = 250 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 82/228 (35%), Positives = 125/228 (54%), Gaps = 4/228 (1%) Query: 17 VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76 N D + ++ I T+L P +L+M+TCF RFIIV +ILR + Sbjct: 23 AAGGDITLFNFNDSEDGQTLSVKLQILLIMTLLGFLPAMLMMMTCFTRFIIVLAILRQAI 82 Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136 G+ PPN V+I +AL +T VM P P +QI+ + FM Sbjct: 83 GLQQSPPNPVLIGIALCLTLLVMRPVWQEMYTEAYVPFEADQISLEQGLGEGKRIISQFM 142 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 T + L + +A +++ +L+P+F++SEL+ +F++GF+I +PFL Sbjct: 143 LAQTSKNSLETLVALAGEELPEDLAQ----LDFSLLLPAFVLSELKTAFQLGFMIFVPFL 198 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 +ID++VA+++MAMGMMML P ISLPFK++ FVL+DGW+LLV L S Sbjct: 199 VIDLVVASVLMAMGMMMLSPMMISLPFKLLVFVLVDGWTLLVGTLTSS 246 >gi|325917745|ref|ZP_08179932.1| flagellar biosynthetic protein FliP [Xanthomonas vesicatoria ATCC 35937] gi|325536044|gb|EGD07853.1| flagellar biosynthetic protein FliP [Xanthomonas vesicatoria ATCC 35937] Length = 280 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 88/223 (39%), Positives = 131/223 (58%), Gaps = 4/223 (1%) Query: 23 LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82 L +V + ++T + T +++ P +L+++T F R IV +LR +G G P Sbjct: 59 LPNVSVGRIGDQPVSLPLQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQTP 118 Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142 N V++ LA+F+T VM P + G+QP +NNQI +TA +P FM RE Sbjct: 119 SNQVLLGLAMFLTALVMMPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIRE 178 Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202 DL F MA D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++V Sbjct: 179 TDLMTFAGMAGDGK----YAGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLVV 234 Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 A+++M+MGMMML P IS PFK++ F+L+DGW L+V L SF Sbjct: 235 ASVLMSMGMMMLSPMLISAPFKILLFILVDGWVLVVGTLAASF 277 >gi|303326581|ref|ZP_07357024.1| flagellar biosynthetic protein FliP [Desulfovibrio sp. 3_1_syn3] gi|302864497|gb|EFL87428.1| flagellar biosynthetic protein FliP [Desulfovibrio sp. 3_1_syn3] Length = 225 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 87/210 (41%), Positives = 137/210 (65%), Gaps = 4/210 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + ++ + T+LS+AP +++ VT F R IIVFS LR MG+ +PP ++ SLA+FMT Sbjct: 19 SVLLEILFLLTVLSVAPAIMLTVTSFTRIIIVFSFLRQAMGVQQLPPTQILASLAIFMTV 78 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 +M P + + +QP +N QI A+ R P FM +TREKDLS+F + Sbjct: 79 VIMFPVGKQINDQALQPYLNEQIDYKVALDRAQAPLRTFMFKHTREKDLSVFYAITQMEL 138 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 + + +L +++ISEL+ +F IGFLI +PFL++DM+++++++AMGMMMLPP Sbjct: 139 PK----NKEEVPTMLLAAAYVISELKTAFTIGFLIYIPFLVLDMVISSVLLAMGMMMLPP 194 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +S+PFK++ FV++DGW+LLV +LV SF+ Sbjct: 195 MMVSMPFKLLLFVMVDGWNLLVGSLVNSFL 224 >gi|304321125|ref|YP_003854768.1| flagellar biosynthetic protein FliP [Parvularcula bermudensis HTCC2503] gi|303300027|gb|ADM09626.1| flagellar biosynthetic protein FliP [Parvularcula bermudensis HTCC2503] Length = 246 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 91/242 (37%), Positives = 145/242 (59%), Gaps = 6/242 (2%) Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPA-DLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63 L++P + A+ + V +P S+ I+ T+LS+AP +L+M+TC P Sbjct: 8 IIAGALLLSPAV--AQEAPSFVEGLPDMGGSLRGDIIPLLLTVTVLSLAPGILMMITCLP 65 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 +IVFS LR +G+ PP+++I++LALF+TF+VM P ++ E GI P +I E T Sbjct: 66 LMVIVFSFLRQALGIPQSPPSMMIMALALFLTFFVMEPVFQQAWEAGIAPYQEGEIDEQT 125 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 A + PF VFM + ++ ++ S D + + +L+PSFM+SE++ Sbjct: 126 AFREAIAPFRVFMEARVHDSTIAA---LSESLPERWDEDVMETVPLSLLVPSFMLSEIKT 182 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 +F+IGF + LPFL ID++ A ++MAMGMMM+PP +SLPFK+ FFV+ DGW+ L L++ Sbjct: 183 AFQIGFAVFLPFLAIDLVTAAVLMAMGMMMVPPAVVSLPFKLAFFVMADGWTKLSAALLR 242 Query: 244 SF 245 + Sbjct: 243 GY 244 >gi|254523353|ref|ZP_05135408.1| flagellar biosynthetic protein FliP [Stenotrophomonas sp. SKA14] gi|219720944|gb|EED39469.1| flagellar biosynthetic protein FliP [Stenotrophomonas sp. SKA14] Length = 259 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 89/225 (39%), Positives = 133/225 (59%), Gaps = 4/225 (1%) Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80 + L D+ + + ++T + T +++ P +L+++T F R IIV +LR +G G Sbjct: 36 TPLPDINVGKIGGAPVSLPLQTLLLMTAITLIPSMLLVLTSFTRIIIVLGLLRQALGTGQ 95 Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140 P N V++ LALF+T VM PT D++ G+ P +N +I TA P FM Sbjct: 96 TPSNQVLLGLALFLTAMVMMPTWDKAWSTGMAPYLNGEIDFQTAWTLTTTPLRGFMLAQI 155 Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200 RE DL F +A + D I + +L+ SF+ SEL+ +FEIGFLI +PF+IID+ Sbjct: 156 RETDLMTFAGIAG----HGTYASPDAIPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDL 211 Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +VA+++M+MGMMML P +S PFK++ FVL+DGW L V L SF Sbjct: 212 VVASVLMSMGMMMLSPMLVSAPFKILLFVLVDGWVLTVGTLAASF 256 >gi|224531662|ref|ZP_03672294.1| flagellar biosynthetic protein FliP [Borrelia valaisiana VS116] gi|224511127|gb|EEF81533.1| flagellar biosynthetic protein FliP [Borrelia valaisiana VS116] Length = 254 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 70/198 (35%), Positives = 117/198 (59%), Gaps = 7/198 (3%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 +P L+++T F R IV +R + + PP +I+ LALF+T + M PT + + Sbjct: 61 SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIIMGLALFLTIFTMWPTFNVIYKQAY 120 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTR---EKDLSLFMDMAHSSHRNTDITKNDHIE 168 PL ++I + P +FM +++ LFM +++ + Sbjct: 121 LPLKESKINFDEFYNKGIAPLRIFMYKQMSDGSHEEIRLFMSISNYDRPK----NFSEVP 176 Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP ISLPFK+I F Sbjct: 177 THVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLILF 236 Query: 229 VLIDGWSLLVENLVKSFI 246 V++DGW+L+ L+KSF+ Sbjct: 237 VMVDGWTLITSGLIKSFM 254 >gi|46578461|ref|YP_009269.1| flagellar biosynthesis protein FliP [Desulfovibrio vulgaris str. Hildenborough] gi|120603955|ref|YP_968355.1| flagellar biosynthesis protein FliP [Desulfovibrio vulgaris DP4] gi|46447872|gb|AAS94528.1| flagellar biosynthetic protein fliP [Desulfovibrio vulgaris str. Hildenborough] gi|120564184|gb|ABM29928.1| flagellar biosynthetic protein FliP [Desulfovibrio vulgaris DP4] Length = 235 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 85/210 (40%), Positives = 134/210 (63%), Gaps = 4/210 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + + + T+LS+AP +++ VT F R IIVF +R +G+ ++PP+ V+ SLA+FMT Sbjct: 29 SLTLEILFMLTVLSLAPAIMLTVTSFTRIIIVFHFVRQALGVQALPPSQVLASLAIFMTV 88 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 +M+P + +QP + +I A+++ P FM +TREKDLS+F + Sbjct: 89 VIMTPVGKEINDNALQPYLREEIGFNEALKKAEAPMRTFMFKHTREKDLSVFYAVTKMEQ 148 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 D + +L ++ISEL+ F IGFLI +PFLI+DM++++I++AMGMMMLPP Sbjct: 149 PR----SKDDVPTIMLAAGYVISELKTGFTIGFLIYIPFLILDMVISSILLAMGMMMLPP 204 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +S+PFK++ FV++DGW LLV +LV SF+ Sbjct: 205 MMVSMPFKLLLFVMVDGWGLLVGSLVNSFM 234 >gi|190574229|ref|YP_001972074.1| flagellar biosynthesis protein FliP [Stenotrophomonas maltophilia K279a] gi|194365647|ref|YP_002028257.1| flagellar biosynthesis protein FliP [Stenotrophomonas maltophilia R551-3] gi|190012151|emb|CAQ45774.1| putative flagellar biosynthetic protein [Stenotrophomonas maltophilia K279a] gi|194348451|gb|ACF51574.1| flagellar biosynthetic protein FliP [Stenotrophomonas maltophilia R551-3] Length = 259 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 89/225 (39%), Positives = 133/225 (59%), Gaps = 4/225 (1%) Query: 21 SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80 + L D+ + + ++T + T +++ P +L+++T F R IIV +LR +G G Sbjct: 36 TPLPDINVGKIGGAPVSLPLQTLLLMTAITLIPSMLLVLTSFTRIIIVLGLLRQALGTGQ 95 Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140 P N V++ LALF+T VM PT D++ G+ P +N +I TA P FM Sbjct: 96 TPSNQVLLGLALFLTAMVMMPTWDKAWSTGMAPYLNGEIDFQTAWTLTTTPLRGFMLAQI 155 Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200 RE DL F +A + D I + +L+ SF+ SEL+ +FEIGFLI +PF+IID+ Sbjct: 156 RETDLMTFAGIAG----HGTYASPDAIPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDL 211 Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +VA+++M+MGMMML P +S PFK++ FVL+DGW L V L SF Sbjct: 212 VVASVLMSMGMMMLSPMLVSAPFKILLFVLVDGWVLTVGTLAASF 256 >gi|188991607|ref|YP_001903617.1| flagellar biosynthesis protein FliP [Xanthomonas campestris pv. campestris str. B100] gi|167733367|emb|CAP51568.1| Flagellar biosynthetic protein fliP [Xanthomonas campestris pv. campestris] Length = 280 Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats. Identities = 88/224 (39%), Positives = 132/224 (58%), Gaps = 4/224 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 +L +V + ++T + T +++ P +L+++T F R IV +LR +G G Sbjct: 58 TLPNVSVGRIGDQPVSLPLQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQT 117 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 P N V++ LA+F+T VM P + G+QP +NNQI +TA +P FM R Sbjct: 118 PSNQVLLGLAMFLTALVMMPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIR 177 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 E DL F MA D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++ Sbjct: 178 ETDLMTFAGMAGDGK----YAGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLV 233 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 VA+++M+MGMMML P IS PFK++ F+L+DGW L+V L SF Sbjct: 234 VASVLMSMGMMMLSPMLISAPFKILLFILVDGWVLVVGTLAASF 277 >gi|294664068|ref|ZP_06729470.1| flagellar biosynthesis pathway component FliP [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292606171|gb|EFF49420.1| flagellar biosynthesis pathway component FliP [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 281 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 89/224 (39%), Positives = 132/224 (58%), Gaps = 4/224 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 SL +V + ++T + T +++ P +L+++T F R IV +LR +G G Sbjct: 59 SLPNVSVGRIGDQPVSLPLQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQT 118 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 P N V++ LA+F+T VM P + G+QP +NNQI +TA +P FM R Sbjct: 119 PSNQVLLGLAMFLTALVMMPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIR 178 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 E DL F MA D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++ Sbjct: 179 ETDLMTFAGMAGDGK----YAGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLV 234 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 VA+++M+MGMMML P IS PFK++ F+L+DGW L+V L SF Sbjct: 235 VASVLMSMGMMMLSPMLISAPFKILLFILVDGWVLVVGTLAASF 278 >gi|78047544|ref|YP_363719.1| flagellar biosynthesis protein FliP [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035974|emb|CAJ23665.1| flagellar biosynthesis pathway component FliP [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 281 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 89/224 (39%), Positives = 132/224 (58%), Gaps = 4/224 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 SL +V + ++T + T +++ P +L+++T F R IV +LR +G G Sbjct: 59 SLPNVSVGRIGDQPVSLPLQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQT 118 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 P N V++ LA+F+T VM P + G+QP +NNQI +TA +P FM R Sbjct: 119 PSNQVLLGLAMFLTALVMMPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIR 178 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 E DL F MA D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++ Sbjct: 179 ETDLMTFAGMAGDGK----YAGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLV 234 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 VA+++M+MGMMML P IS PFK++ F+L+DGW L+V L SF Sbjct: 235 VASVLMSMGMMMLSPMLISAPFKILLFILVDGWVLVVGTLAASF 278 >gi|330443947|ref|YP_004376933.1| YscR/HrcR family type III secretion apparatus protein [Chlamydophila pecorum E58] gi|328807057|gb|AEB41230.1| type III secretion apparatus protein, YscR/HrcR family [Chlamydophila pecorum E58] Length = 305 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 68/213 (31%), Positives = 119/213 (55%), Gaps = 11/213 (5%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 I L+++P L++++T + + II +LR +G+ PP+ V+ +AL ++ YVM PT Sbjct: 92 VILIFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTG 151 Query: 104 DRSIEMGIQPLMNNQI-----------TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152 + + + N I T A + EP F+ NT + + F ++ Sbjct: 152 AAMYKDAKKEIEANTIPRNLFTAEGAETVFVAFNKSKEPLRNFLIRNTPKAQIQSFYKIS 211 Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 + ++ I+IP+F++ +++ +FEIG +I LPF +ID++ A I++AM MM Sbjct: 212 QKTFPAEIREHLSATDFVIVIPAFIMGQIKNAFEIGVMIYLPFFVIDLVTANILVAMQMM 271 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ML P SISLP K++ V++DGW+LL++ L+ SF Sbjct: 272 MLSPLSISLPLKLLLVVMVDGWTLLLQGLMISF 304 >gi|62185507|ref|YP_220292.1| type III secretion system protein [Chlamydophila abortus S26/3] gi|62148574|emb|CAH64346.1| putative type III export protein [Chlamydophila abortus S26/3] Length = 305 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 68/213 (31%), Positives = 119/213 (55%), Gaps = 11/213 (5%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 I L+++P L++++T + + II +LR +G+ PP+ V+ +AL ++ YVM PT Sbjct: 92 VILIFLALSPFLMMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTG 151 Query: 104 DRSIEMGIQPLMNNQI-----------TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152 + + N I T A+ + EP F+ NT + + F ++ Sbjct: 152 VAMYNDARKEIQGNAIPRDLFSAEGAETVFVALNKSKEPLRSFLIRNTPKSQIQSFYKIS 211 Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 + ++ I+IP+F++ +++ +FEIG LI LPF +ID++ A +++AM MM Sbjct: 212 QKTFPPEIREHMTASDFVIVIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQMM 271 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ML P SISLP K++ V++DGW+LL++ L+ SF Sbjct: 272 MLSPLSISLPLKLLLVVMVDGWTLLLQGLMISF 304 >gi|255264563|ref|ZP_05343905.1| flagellar biosynthetic protein FliP [Thalassiobium sp. R2A62] gi|255106898|gb|EET49572.1| flagellar biosynthetic protein FliP [Thalassiobium sp. R2A62] Length = 243 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 94/234 (40%), Positives = 141/234 (60%), Gaps = 6/234 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 +IR+ F AL L + V A+ ++ D S++ ++ + TILSI P L IM+T Sbjct: 4 LIRFSFLALALFSATSVTAQEI---SLSFGDDASLAGRSIQLLALVTILSIVPGLAIMIT 60 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 CFP + V +ILR +G+ PPN++I+SLALF+T++VM P S +GI PL ++ Sbjct: 61 CFPFIVTVLAILRQAIGLQQSPPNMLIVSLALFLTYFVMEPVFIESWTLGIGPLSTGELE 120 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A+ PF FM D + F + +++ ++IPSF++SE Sbjct: 121 IEPALANAISPFRDFMA---LRIDPNTFQTLTDIRPQSSTSEDIASAPLSLMIPSFLLSE 177 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234 + R+F++GFLI LPFLIID++VA I+M+MGMMM+PP +SLPFK+ FFV+ DGW Sbjct: 178 IERAFQVGFLIFLPFLIIDLVVAAILMSMGMMMVPPAIVSLPFKLAFFVIADGW 231 >gi|329943276|ref|ZP_08292050.1| hypothetical protein G5Q_0966 [Chlamydophila psittaci Cal10] gi|332287854|ref|YP_004422755.1| secretion and cellular translocation protein R [Chlamydophila psittaci 6BC] gi|84785894|gb|ABC62086.1| secretion and cellular translocation protein R [Chlamydophila psittaci] gi|313848426|emb|CBY17430.1| putative type III export protein [Chlamydophila psittaci RD1] gi|325506962|gb|ADZ18600.1| secretion and cellular translocation protein R [Chlamydophila psittaci 6BC] gi|328814823|gb|EGF84813.1| hypothetical protein G5Q_0966 [Chlamydophila psittaci Cal10] gi|328915116|gb|AEB55949.1| type III secretion inner membrane protein SctR [Chlamydophila psittaci 6BC] Length = 305 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 68/213 (31%), Positives = 119/213 (55%), Gaps = 11/213 (5%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 I L+++P L++++T + + II +LR +G+ PP+ V+ +AL ++ YVM PT Sbjct: 92 VILIFLALSPFLMMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTG 151 Query: 104 DRSIEMGIQPLMNNQI-----------TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152 + + N I T A+ + EP F+ NT + + F ++ Sbjct: 152 VAMYNDARKEIQGNAIPRDLFSAEGAETVFVALNKSKEPLRSFLIRNTPKSQIQSFYKIS 211 Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 + ++ I+IP+F++ +++ +FEIG LI LPF +ID++ A +++AM MM Sbjct: 212 QKTFPPEIREHMTASDFVIVIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQMM 271 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ML P SISLP K++ V++DGW+LL++ L+ SF Sbjct: 272 MLSPLSISLPLKLLLVVMVDGWTLLLQGLMISF 304 >gi|53722431|ref|YP_111416.1| type III secretion system protein [Burkholderia pseudomallei K96243] gi|76818756|ref|YP_335589.1| type III secretion system protein [Burkholderia pseudomallei 1710b] gi|126444935|ref|YP_001062995.1| type III secretion system protein [Burkholderia pseudomallei 668] gi|126456985|ref|YP_001075942.1| type III secretion system protein [Burkholderia pseudomallei 1106a] gi|134282501|ref|ZP_01769205.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 305] gi|167724022|ref|ZP_02407258.1| type III secretion system protein [Burkholderia pseudomallei DM98] gi|167742991|ref|ZP_02415765.1| type III secretion system protein [Burkholderia pseudomallei 14] gi|167820162|ref|ZP_02451842.1| type III secretion system protein [Burkholderia pseudomallei 91] gi|167828537|ref|ZP_02460008.1| type III secretion system protein [Burkholderia pseudomallei 9] gi|167849995|ref|ZP_02475503.1| type III secretion system protein [Burkholderia pseudomallei B7210] gi|167898604|ref|ZP_02486005.1| type III secretion system protein [Burkholderia pseudomallei 7894] gi|167906946|ref|ZP_02494151.1| type III secretion system protein [Burkholderia pseudomallei NCTC 13177] gi|167915305|ref|ZP_02502396.1| type III secretion system protein [Burkholderia pseudomallei 112] gi|167923138|ref|ZP_02510229.1| type III secretion system protein [Burkholderia pseudomallei BCC215] gi|217425350|ref|ZP_03456844.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 576] gi|226199064|ref|ZP_03794626.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei Pakistan 9] gi|237510373|ref|ZP_04523088.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei MSHR346] gi|242313556|ref|ZP_04812573.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 1106b] gi|254183805|ref|ZP_04890397.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 1655] gi|254186719|ref|ZP_04893235.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei Pasteur 52237] gi|254194021|ref|ZP_04900453.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei S13] gi|254264816|ref|ZP_04955681.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 1710a] gi|254301600|ref|ZP_04969044.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 406e] gi|4206078|gb|AAD11411.1| SctR [Burkholderia pseudomallei] gi|52212845|emb|CAH38879.1| putative type III secretion-associated protein [Burkholderia pseudomallei K96243] gi|76583229|gb|ABA52703.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 1710b] gi|126224426|gb|ABN87931.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 668] gi|126230753|gb|ABN94166.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 1106a] gi|134246058|gb|EBA46148.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 305] gi|157810966|gb|EDO88136.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 406e] gi|157934403|gb|EDO90073.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei Pasteur 52237] gi|169650772|gb|EDS83465.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei S13] gi|184214338|gb|EDU11381.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 1655] gi|217391601|gb|EEC31629.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 576] gi|225928839|gb|EEH24864.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei Pakistan 9] gi|235002578|gb|EEP52002.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei MSHR346] gi|242136795|gb|EES23198.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 1106b] gi|254215818|gb|EET05203.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 1710a] Length = 216 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 125/206 (60%), Gaps = 2/206 (0%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 + +S+ P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ YVM+P Sbjct: 10 LLLVVIAISLLPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYVMAP 69 Query: 102 TLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 ++ + + + +Q ++ A+ EPF F+ +T E++ F+ A Sbjct: 70 IGMQAAKALDEQQLASQSSQAIIQALGSAREPFRSFLEKHTPEREKRFFIRSASVIWPKE 129 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + + +L P+F +SEL +F+IGFL+ + F+I+D+++A +++A+G+ + PT++ Sbjct: 130 EASLLNERDLIVLAPAFALSELTDAFKIGFLLYIVFIIVDLVIANVLLALGLNQITPTNV 189 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 ++PFK++ FV +DGWS L+ LV ++ Sbjct: 190 AIPFKLLLFVAMDGWSTLIHGLVMTY 215 >gi|84514806|ref|ZP_01002169.1| Flagellar transport protein FliP [Loktanella vestfoldensis SKA53] gi|84510965|gb|EAQ07419.1| Flagellar transport protein FliP [Loktanella vestfoldensis SKA53] Length = 252 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 150/247 (60%), Gaps = 8/247 (3%) Query: 4 YCFFALFLVTPELVFAKSSLH----DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 + L + FA+ +V+ + + ++ + T+L+I P L+ + Sbjct: 9 FGIIFLCSIPLGGAFAQVGGGLPALNVLVGNDGGTTYSLSLQILALMTVLTILPSFLLGI 68 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R II+ SILR MG PPN V+IS+ALF+TFYVM+PT + I P + ++ Sbjct: 69 TAFTRIIIILSILRQAMGTQQTPPNQVLISIALFLTFYVMAPTFEEIYSTTISPYLAGEL 128 Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 + AI+ A F+ NTRE +L++F +MA + N+ + Y +L+P+F+ S Sbjct: 129 SAVAAIEGSANIMRGFLILNTREAELAMFAEMAG----DAPYASNEDVPYAVLLPAFITS 184 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL+ +F+IGFL+ LPFL+ID+++A+I+M++GMMML P ++LPFK++ FVL+DGW++ + Sbjct: 185 ELKTAFQIGFLLFLPFLVIDLVIASILMSLGMMMLSPMLVALPFKLLLFVLVDGWAMTIG 244 Query: 240 NLVKSFI 246 ++ +++ Sbjct: 245 SIASTYV 251 >gi|171915734|ref|ZP_02931204.1| type III secretion system protein [Verrucomicrobium spinosum DSM 4136] Length = 222 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 71/208 (34%), Positives = 131/208 (62%), Gaps = 2/208 (0%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + + ++L++ P L +MVT + + ++V S++R +G+ +PPN+V+ +A+ +T Y+M Sbjct: 10 LTLIVLASVLALIPFLAVMVTSYVKLVVVLSLVRNALGVQQIPPNMVLNGIAVILTIYIM 69 Query: 100 SPTLDRSIEMGIQPLMNN--QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +P ++ + + N + + R + P F+ +T +++ + F+D A Sbjct: 70 APIGQQTFANLEKEDLKNLSVESIKGIMDRSSTPIRKFLAYHTADREKAFFLDTARRLWG 129 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + K D ++ +LIP+F +SEL +F+IGFL+ LPF+ ID+IV+ I++AMGMMM+ P Sbjct: 130 DKAQVKIDKDDFFVLIPAFTVSELTAAFQIGFLLYLPFIAIDLIVSNILLAMGMMMVSPM 189 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 +ISLPFK++ FVL+DGW+ L+ LV ++ Sbjct: 190 TISLPFKLLLFVLVDGWARLIHGLVITY 217 >gi|166712022|ref|ZP_02243229.1| flagellar biosynthesis protein FliP [Xanthomonas oryzae pv. oryzicola BLS256] Length = 281 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 88/224 (39%), Positives = 132/224 (58%), Gaps = 4/224 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 SL +V + ++T + T +++ P +L+++T F R IV +LR +G G Sbjct: 59 SLPNVSVGRIGDQPVSLPLQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQT 118 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 P N V++ L++F+T VM P + G+QP +NNQI +TA +P FM R Sbjct: 119 PSNQVLLGLSMFLTALVMMPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIR 178 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 E DL F MA D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++ Sbjct: 179 ETDLMTFAGMAGDGK----YVGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLV 234 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 VA+++M+MGMMML P IS PFK++ F+L+DGW L+V L SF Sbjct: 235 VASVLMSMGMMMLSPMLISAPFKILLFILVDGWVLVVGTLAASF 278 >gi|58582234|ref|YP_201250.1| flagellar biosynthesis protein FliP [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624127|ref|YP_451499.1| flagellar biosynthesis protein FliP [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58426828|gb|AAW75865.1| flagellar biosynthetic protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368067|dbj|BAE69225.1| flagellar biosynthetic protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 281 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 88/224 (39%), Positives = 132/224 (58%), Gaps = 4/224 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 SL +V + ++T + T +++ P +L+++T F R IV +LR +G G Sbjct: 59 SLPNVSVGRIGDQPVSLPLQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQT 118 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 P N V++ L++F+T VM P + G+QP +NNQI +TA +P FM R Sbjct: 119 PSNQVLLGLSMFLTALVMMPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIR 178 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 E DL F MA D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++ Sbjct: 179 ETDLMTFAGMAGDGK----YVGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLV 234 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 VA+++M+MGMMML P IS PFK++ F+L+DGW L+V L SF Sbjct: 235 VASVLMSMGMMMLSPMLISAPFKILLFILVDGWVLVVGTLAASF 278 >gi|1185059|gb|AAB58968.1| flagellar export protein [Borrelia burgdorferi] Length = 254 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 81/258 (31%), Positives = 137/258 (53%), Gaps = 16/258 (6%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNI---------PADLSISTWIVRTFGIFTILSI 51 M + F LF L FA++ N S + ++ + TI+++ Sbjct: 1 MRKCFNFFLFFSVTSLSFAQTKSLQTTNGLNFPFLNFDSIGGSEIAFSLQLLILLTIITL 60 Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 +P L+++T F R IV +R + + PP +++ LALF+T + M PT + E Sbjct: 61 SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNSIYEQAY 120 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNT---REKDLSLFMDMAHSSHRNTDITKNDHIE 168 PL ++I + P +FM R +++ L M M++ + Sbjct: 121 LPLKESKINFNEFYNKGIAPLRIFMYKQMSDGRHEEIRLLMSMSNYDRPK----NFSEVP 176 Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP ISL FK+I F Sbjct: 177 SHVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLHFKLILF 236 Query: 229 VLIDGWSLLVENLVKSFI 246 V++DGW+L+ L+KSF+ Sbjct: 237 VMVDGWTLITSGLIKSFM 254 >gi|310816848|ref|YP_003964812.1| flagellar biosynthesis protein FliP [Ketogulonicigenium vulgare Y25] gi|308755583|gb|ADO43512.1| flagellar biosynthesis protein FliP [Ketogulonicigenium vulgare Y25] Length = 244 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 91/239 (38%), Positives = 139/239 (58%), Gaps = 4/239 (1%) Query: 7 FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66 AL L+ + + + S++ V+ + T++S+ P L IM T FP + Sbjct: 9 VALTLLAGAAGAQGVDIQSLGLDFGEGSVAGRSVQLLVMVTLISLVPALAIMFTSFPFMV 68 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 V SILR G+G PPN++I++LALF+T+YVM+P D + GI PL+ +++ A++ Sbjct: 69 TVLSILRQGLGTQQSPPNMLIVTLALFLTWYVMAPVFDEAWANGIAPLLEDRLPVDAALR 128 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 PF FM + +T L+PSF++SEL R+F+ Sbjct: 129 AAMAPFQTFMSGRVDPTTYQTMASL----RPDTVGVAVTDAPLSTLVPSFLLSELSRAFQ 184 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGFLI LPFLIID++VA ++M+MGMMM+PP ++LPFK+ FFV+ DGWSLL +LV+++ Sbjct: 185 IGFLIFLPFLIIDLVVAAVLMSMGMMMVPPAVVALPFKLAFFVVADGWSLLASSLVRNY 243 >gi|218892351|ref|YP_002441218.1| type III secretion system protein [Pseudomonas aeruginosa LESB58] gi|218772577|emb|CAW28360.1| translocation protein in type III secretion [Pseudomonas aeruginosa LESB58] Length = 217 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 70/191 (36%), Positives = 115/191 (60%), Gaps = 2/191 (1%) Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT--LDRSIEMGIQPL 114 +M T F + +VFS+LR +G+ +PPN+ + LA+ ++ YVM+P R Sbjct: 25 VMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLRNHDVS 84 Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174 +++ + + P+ F++ +E++ + FM+ + + D IL+P Sbjct: 85 LSDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSLLILLP 144 Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234 +F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P +ISLPFK++ FVL+DGW Sbjct: 145 AFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISLPFKLLLFVLLDGW 204 Query: 235 SLLVENLVKSF 245 + L LV S+ Sbjct: 205 ARLTHGLVISY 215 >gi|27550057|gb|AAO18040.1| LscR [Photorhabdus luminescens] Length = 217 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 69/191 (36%), Positives = 115/191 (60%), Gaps = 2/191 (1%) Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT--LDRSIEMGIQPL 114 +M T F + +VFS+LR +G+ +PPN+ + LA+ +T YVM+P + + Sbjct: 25 VMATSFLKLAVVFSLLRNALGVQQIPPNMAMYGLAIILTIYVMAPVGFATQDYLRQNEVS 84 Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174 +N + ++ P+ F++ + + + + F+D + + + IL+P Sbjct: 85 FSNAQSVEKFVEEGLTPYRNFLKQHIKPSERTFFIDSTRQIWPSQYADRLEPDSLLILLP 144 Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234 SF +SEL R+FEIGFL+ LPF+ ID+I++ I++AMGMMM+ P +ISLPFK++ FVL+DGW Sbjct: 145 SFTVSELTRAFEIGFLLYLPFIAIDLIISNILLAMGMMMVSPMTISLPFKLLLFVLLDGW 204 Query: 235 SLLVENLVKSF 245 + L LV S+ Sbjct: 205 TRLTHGLVISY 215 >gi|15835465|ref|NP_297224.1| type III secretion system protein [Chlamydia muridarum Nigg] gi|270289654|ref|ZP_06195956.1| type III secretion system protein [Chlamydia muridarum Weiss] gi|301337041|ref|ZP_07225243.1| type III secretion system protein [Chlamydia muridarum MopnTet14] gi|8163334|gb|AAF73610.1| type III secretion inner membrane protein SctR [Chlamydia muridarum Nigg] Length = 311 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 67/213 (31%), Positives = 122/213 (57%), Gaps = 11/213 (5%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 I L+++P L++++T + + II +LR +G+ PP+ V+ +AL ++ YVM PT Sbjct: 98 VIILFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTG 157 Query: 104 DRSIEMGIQPLMNNQI-----------TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152 + + ++ + T A+ + EP F+ NNT + + F ++ Sbjct: 158 MAMYNDAKKGIESDAVPRDLFSAEGAETVFVALNKSKEPLRSFLINNTPKPQIQSFYKIS 217 Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 + + ++ ++IP+F++ +++ +FEIG LI LPF +ID++ A +++AM MM Sbjct: 218 QKTFPPELRQQLTPSDFVVVIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQMM 277 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ML P SISLP K++ V++DGW+LL+E L+ SF Sbjct: 278 MLSPLSISLPLKLLLVVMVDGWTLLLEGLMISF 310 >gi|289666110|ref|ZP_06487691.1| flagellar biosynthesis protein FliP [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 281 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 88/224 (39%), Positives = 132/224 (58%), Gaps = 4/224 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 SL +V + ++T + T +++ P +L+++T F R IV +LR +G G Sbjct: 59 SLPNVSVGRIGDQPVSLPLQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQT 118 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 P N V++ L++F+T VM P + G+QP +NNQI +TA +P FM R Sbjct: 119 PSNQVLLGLSMFLTALVMMPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIR 178 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 E DL F MA D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++ Sbjct: 179 ETDLMTFAGMAGDGK----YAGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLV 234 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 VA+++M+MGMMML P IS PFK++ F+L+DGW L+V L SF Sbjct: 235 VASVLMSMGMMMLSPMLISAPFKILLFILVDGWVLVVGTLAASF 278 >gi|21231364|ref|NP_637281.1| flagellar biosynthesis protein FliP [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768583|ref|YP_243345.1| flagellar biosynthesis protein FliP [Xanthomonas campestris pv. campestris str. 8004] gi|21113027|gb|AAM41205.1| flagellar biosynthetic protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573915|gb|AAY49325.1| flagellar biosynthetic protein [Xanthomonas campestris pv. campestris str. 8004] Length = 280 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 88/224 (39%), Positives = 132/224 (58%), Gaps = 4/224 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 +L +V + ++T + T +++ P +L+++T F R IV +LR +G G Sbjct: 58 TLPNVSVGRIGDQPVSLPLQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQT 117 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 P N V++ LA+F+T VM P + G+QP +NNQI +TA +P FM R Sbjct: 118 PSNQVLLGLAMFLTALVMMPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIR 177 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 E DL F MA D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++ Sbjct: 178 ETDLMTFAGMAGDGK----YAGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLV 233 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 VA+++M+MGMMML P IS PFK++ F+L+DGW L+V L SF Sbjct: 234 VASVLMSMGMMMLSPMLISAPFKILLFILVDGWVLVVGTLAASF 277 >gi|37527633|ref|NP_930977.1| type III secretion system protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787068|emb|CAE16143.1| Type III secretion component protein SctR [Photorhabdus luminescens subsp. laumondii TTO1] Length = 217 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 68/191 (35%), Positives = 115/191 (60%), Gaps = 2/191 (1%) Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT--LDRSIEMGIQPL 114 +M T F + +VFS+LR +G+ +PPN+ + LA+ +T YVM+P + + Sbjct: 25 VMATSFLKLAVVFSLLRNALGVQQIPPNMAMYGLAIILTIYVMAPVGFATQDYLRQNEVS 84 Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174 +N + ++ P+ F++ + + + + F+D + + + IL+P Sbjct: 85 FSNAQSVDKFVEEGLTPYRNFLKQHIKPSERTFFIDSTRQIWPSQYADRLEPDSLLILLP 144 Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234 +F +SEL R+FEIGFL+ LPF+ ID+I++ I++AMGMMM+ P +ISLPFK++ FVL+DGW Sbjct: 145 AFTVSELTRAFEIGFLLYLPFIAIDLIISNILLAMGMMMVSPMTISLPFKLLLFVLLDGW 204 Query: 235 SLLVENLVKSF 245 + L LV S+ Sbjct: 205 TRLTHGLVISY 215 >gi|300936103|ref|ZP_07151044.1| flagellar biosynthetic protein FliP [Escherichia coli MS 21-1] gi|300458752|gb|EFK22245.1| flagellar biosynthetic protein FliP [Escherichia coli MS 21-1] Length = 194 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 81/189 (42%), Positives = 121/189 (64%), Gaps = 6/189 (3%) Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115 ++M+TCF RFIIV S+LR +G+ PPN ++I +AL +T VM P + + P Sbjct: 5 VLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTLLVMRPIWLNIYDHAVVPFE 64 Query: 116 NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPS 175 N+QIT T A+ A P FM T +K ++ M + + D + I++P+ Sbjct: 65 NDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKGNAADQ------DLSIVVPA 118 Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235 +++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P +SLPFK++ FVLIDGWS Sbjct: 119 YVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWS 178 Query: 236 LLVENLVKS 244 L + L S Sbjct: 179 LTIGTLTTS 187 >gi|188576794|ref|YP_001913723.1| flagellar biosynthesis protein FliP [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576986|ref|YP_001913915.1| flagellar biosynthesis protein FliP [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521246|gb|ACD59191.1| flagellar biosynthetic protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521438|gb|ACD59383.1| flagellar biosynthetic protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 281 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 88/224 (39%), Positives = 132/224 (58%), Gaps = 4/224 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 SL +V + ++T + T +++ P +L+++T F R IV +LR +G G Sbjct: 59 SLPNVSVGRIGDQPVSLPLQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQT 118 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 P N V++ L++F+T VM P + G+QP +NNQI +TA +P FM R Sbjct: 119 PSNQVLLGLSMFLTALVMMPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIR 178 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 E DL F MA D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++ Sbjct: 179 ETDLMTFAGMAGDGK----YVGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLV 234 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 VA+++M+MGMMML P IS PFK++ F+L+DGW L+V L SF Sbjct: 235 VASVLMSMGMMMLSPMLISAPFKILLFILVDGWVLVVGTLAASF 278 >gi|108758905|ref|YP_633786.1| type III secretion system protein [Myxococcus xanthus DK 1622] gi|108462785|gb|ABF87970.1| type III secretion apparatus protein YscR/HrcR [Myxococcus xanthus DK 1622] Length = 218 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 69/217 (31%), Positives = 128/217 (58%), Gaps = 4/217 (1%) Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92 +S + + G+ ++S+ P ++M+T F + +V S+ R+ MG PP +V+ LA Sbjct: 1 MSYAGSPLSMMGMLAVMSLLPFAVLMLTSFSKIAVVLSLARSAMGTQQAPPTIVLTGLAA 60 Query: 93 FMTFYVMSPTLDRSIEMGIQPLMN----NQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148 +T ++M+P ++R + G + +A RV+EP F+ + ++ + F Sbjct: 61 VLTGHIMAPVMERMYDAGQVAYAEVASGSGAEMLSAASRVSEPLRAFLIKHGSAEERARF 120 Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208 +D+A ++ + I+IP+F+I+EL+ +F+IGFL+ LPFL++DM++A +++A Sbjct: 121 VDLARELRPVEEMDAVRETDLFIVIPAFVITELKEAFQIGFLVFLPFLVLDMVIANVLLA 180 Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +GM L P+ +SLPFK++ FV +DGWSLL L+ + Sbjct: 181 LGMQTLSPSQVSLPFKILLFVAVDGWSLLARGLILGY 217 >gi|256370973|ref|YP_003108797.1| flagellar biosynthetic protein FliP [Acidimicrobium ferrooxidans DSM 10331] gi|256007557|gb|ACU53124.1| flagellar biosynthetic protein FliP [Acidimicrobium ferrooxidans DSM 10331] Length = 229 Score = 172 bits (435), Expect = 6e-41, Method: Composition-based stats. Identities = 85/230 (36%), Positives = 139/230 (60%), Gaps = 5/230 (2%) Query: 15 ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74 L+ A +SL S T V T+LS+AP LL++ T F ++V SI R Sbjct: 3 GLLLAATSLPSATLTVHAGSTPTASVVIILALTVLSLAPTLLVLFTGFVEIVVVLSITRN 62 Query: 75 GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134 +G+ + PPN V+ LALF++ +VM+PTL + P ++ I+ A+ R P + Sbjct: 63 ALGLSTTPPNQVLAGLALFLSLFVMAPTLGIVEHQAVLPYLHGHISAVVALDRAEGPIKL 122 Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194 +M +TR ++L+LF + H + D + +P+F++SEL +F +GF+I +P Sbjct: 123 WMLRHTRTQELALFDVVTHHAGVAPAAAPLDAV-----VPAFILSELHSAFVMGFIIYVP 177 Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 FL+ID++V++++M++GMMMLPPT +SLPFK++ FVL+DGW+L+ L+ S Sbjct: 178 FLVIDLVVSSVLMSLGMMMLPPTLVSLPFKLLLFVLVDGWTLVAHALLVS 227 >gi|150260681|ref|ZP_01917409.1| putative type III secretion apparatus protein [Yersinia pestis CA88-4125] gi|153950632|ref|YP_001402768.1| type III secretion system protein [Yersinia pseudotuberculosis IP 31758] gi|162418478|ref|YP_001608228.1| type III secretion system protein [Yersinia pestis Angola] gi|165926714|ref|ZP_02222546.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia pestis biovar Orientalis str. F1991016] gi|166010511|ref|ZP_02231409.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia pestis biovar Antiqua str. E1979001] gi|166213909|ref|ZP_02239944.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia pestis biovar Antiqua str. B42003004] gi|167402211|ref|ZP_02307684.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419036|ref|ZP_02310789.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426164|ref|ZP_02317917.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218927477|ref|YP_002345352.1| type III secretion system protein [Yersinia pestis CO92] gi|229836525|ref|ZP_04456691.1| putative type III secretion apparatus protein [Yersinia pestis Pestoides A] gi|229840133|ref|ZP_04460292.1| putative type III secretion apparatus protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842214|ref|ZP_04462369.1| putative type III secretion apparatus protein [Yersinia pestis biovar Orientalis str. India 195] gi|229904047|ref|ZP_04519160.1| putative type III secretion apparatus protein [Yersinia pestis Nepal516] gi|294502343|ref|YP_003566405.1| putative type III secretion apparatus protein [Yersinia pestis Z176003] gi|51587964|emb|CAH19567.1| putative type III secretion apparatus protein, YscR/EscR [Yersinia pseudotuberculosis IP 32953] gi|115346088|emb|CAL18956.1| putative type III secretion apparatus protein [Yersinia pestis CO92] gi|149290089|gb|EDM40166.1| putative type III secretion apparatus protein [Yersinia pestis CA88-4125] gi|152962127|gb|ABS49588.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia pseudotuberculosis IP 31758] gi|162351293|gb|ABX85241.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia pestis Angola] gi|165921337|gb|EDR38561.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia pestis biovar Orientalis str. F1991016] gi|165990601|gb|EDR42902.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia pestis biovar Antiqua str. E1979001] gi|166204884|gb|EDR49364.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia pestis biovar Antiqua str. B42003004] gi|166963030|gb|EDR59051.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048392|gb|EDR59800.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054875|gb|EDR64677.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229679817|gb|EEO75920.1| putative type III secretion apparatus protein [Yersinia pestis Nepal516] gi|229690524|gb|EEO82578.1| putative type III secretion apparatus protein [Yersinia pestis biovar Orientalis str. India 195] gi|229696499|gb|EEO86546.1| putative type III secretion apparatus protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706209|gb|EEO92217.1| putative type III secretion apparatus protein [Yersinia pestis Pestoides A] gi|262360423|gb|ACY57144.1| putative type III secretion apparatus protein [Yersinia pestis D106004] gi|262364373|gb|ACY60930.1| putative type III secretion apparatus protein [Yersinia pestis D182038] gi|294352802|gb|ADE63143.1| putative type III secretion apparatus protein [Yersinia pestis Z176003] Length = 216 Score = 172 bits (435), Expect = 6e-41, Method: Composition-based stats. Identities = 74/208 (35%), Positives = 123/208 (59%), Gaps = 2/208 (0%) Query: 41 RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100 + + +LS+ P+L++M T F + +VFS+LR +G+ VPPN+ I LAL +T ++M+ Sbjct: 9 QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA 68 Query: 101 PTLDRSIEMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 P ++N I Q P+ F++ NT + ++ F D+ + Sbjct: 69 PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE 128 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 IL+P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P + Sbjct: 129 RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT 188 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +SLPFK++ FVL+DGWSL++ LV S++ Sbjct: 189 LSLPFKLLVFVLVDGWSLVLGQLVGSYL 216 >gi|291086629|ref|ZP_06356304.2| type III secretion apparatus protein, YscR/HrcR family [Citrobacter youngae ATCC 29220] gi|291067492|gb|EFE05601.1| type III secretion apparatus protein, YscR/HrcR family [Citrobacter youngae ATCC 29220] Length = 218 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 72/206 (34%), Positives = 124/206 (60%), Gaps = 2/206 (0%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 + LS+ P +++ T F + IVFS+LR +G+ +PPN+ I LAL ++ ++M+P Sbjct: 13 LIILLVALSVLPFIVVSCTSFIKLAIVFSLLRNALGIQQIPPNMSIYGLALILSLFIMAP 72 Query: 102 TLDRSIEMGIQ-PLMNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 + + + P+ N + + +P+ VF++ NT+EK + F + H + Sbjct: 73 VGMQINDNVQKEPISFNDVNLYERLDNSVLQPYLVFLQRNTKEKQIRYFSRIGHQTWPKK 132 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + +++P+F I++L +F+IG LI LPF+ ID+IV+ I++AMGMMM+ PT+I Sbjct: 133 YQERLNKNSLFVMLPAFGITQLDEAFKIGLLIYLPFIAIDLIVSNILLAMGMMMVSPTTI 192 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ F++ GW L+E LV SF Sbjct: 193 SLPFKIMLFIIAGGWQFLIEKLVLSF 218 >gi|312602787|ref|YP_004022632.1| type III secretion inner membrane protein SctR [Burkholderia rhizoxinica HKI 454] gi|306431590|emb|CBK52142.1| type III secretion inner membrane protein SctR [Burkholderia rhizoxinica HKI 454] gi|312170101|emb|CBW77113.1| type III secretion inner membrane protein SctR [Burkholderia rhizoxinica HKI 454] Length = 230 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 58/211 (27%), Positives = 122/211 (57%), Gaps = 2/211 (0%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + + I +S+ P++ +++T + + ++V S+LR +G VPPN+V+ +A+ ++ Sbjct: 19 SELTSLMLIVLAISVVPLVAVVITSYTKIVVVLSLLRNALGAQQVPPNMVLNGIAILVSL 78 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154 Y+M+P + + +++ A EPF F++ + +++ FM A Sbjct: 79 YIMAPIGMAAAKQLENQPNAGTPSQSVVQAFSAAQEPFRAFLKQHANKREKRFFMRTATV 138 Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214 ++ +L P+F +SEL +F+IGFL+ + F++ID+I+A +++AMG+ + Sbjct: 139 IWPKEVADGLREDDFIVLAPAFTLSELTDAFKIGFLLYITFVVIDLIIANVLLAMGLNQV 198 Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 PT++++PFK++ FV++DGWS L+ L+ ++ Sbjct: 199 MPTNVAIPFKLLLFVVMDGWSTLIHGLILTY 229 >gi|89897883|ref|YP_514993.1| type III secretion system protein [Chlamydophila felis Fe/C-56] gi|89331255|dbj|BAE80848.1| type III secretion flagellar biosynthesis inner membrane protein [Chlamydophila felis Fe/C-56] Length = 305 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 67/213 (31%), Positives = 119/213 (55%), Gaps = 11/213 (5%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 I L+++P L++++T + + II +LR +G+ PP+ V+ +AL ++ YVM PT Sbjct: 92 IILIFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTG 151 Query: 104 DRSIEMGIQPLMNNQI-----------TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152 + + N I T A+ + EP F+ NT + + F ++ Sbjct: 152 VAMYNDARKEIQGNAIPRDLFSAEGAETVFVALNKSKEPLRSFLIRNTPKSQIQSFYKIS 211 Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 + ++ I++P+F++ +++ +FEIG LI LPF +ID++ A +++AM MM Sbjct: 212 QKTFPPEIREHLTVSDFVIIVPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQMM 271 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ML P SISLP K++ V++DGW+LL++ L+ SF Sbjct: 272 MLSPLSISLPLKLLLVVMVDGWTLLLQGLMISF 304 >gi|10955564|ref|NP_052405.1| type III secretion system protein [Yersinia enterocolitica] gi|28373022|ref|NP_783679.1| type III secretion system protein [Yersinia enterocolitica] gi|32470292|ref|NP_863527.1| type III secretion system protein [Yersinia enterocolitica] gi|122815816|ref|YP_001004082.1| type III secretion system protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332163586|ref|YP_004424928.1| type III secretion system protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|14579350|gb|AAK69227.1|AF336309_22 YscR [Yersinia enterocolitica] gi|4324351|gb|AAD16828.1| YscR [Yersinia enterocolitica W22703] gi|23630594|gb|AAN37550.1| YscR [Yersinia enterocolitica] gi|121663690|emb|CAL10052.1| putative type III secretion protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|310923235|emb|CBW54701.1| YscR, T3SS component [Yersinia enterocolitica (type O:8)] gi|318608197|emb|CBY78171.1| type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components) [Yersinia enterocolitica subsp. palearctica Y11] gi|325667816|gb|ADZ44459.1| type III secretion system protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 217 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 69/191 (36%), Positives = 116/191 (60%), Gaps = 2/191 (1%) Query: 57 IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT--LDRSIEMGIQPL 114 +M T F +F +VFS+LR +G+ +PPN+ + LA+ ++ YVM+P + + Sbjct: 25 VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS 84 Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174 + N + P+ +F++ + + ++ S F+D + + IL+P Sbjct: 85 LTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILLP 144 Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234 +F +SEL R+FEIGFLI LPF++ID++++ I++AMGMMM+ P +ISLPFK++ FVL+DGW Sbjct: 145 AFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISLPFKLLLFVLLDGW 204 Query: 235 SLLVENLVKSF 245 + L LV S+ Sbjct: 205 TRLTHGLVISY 215 >gi|90415342|ref|ZP_01223276.1| Flagella transport protein FliP family protein [marine gamma proteobacterium HTCC2207] gi|90332665|gb|EAS47835.1| Flagella transport protein FliP family protein [marine gamma proteobacterium HTCC2207] Length = 256 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 89/221 (40%), Positives = 146/221 (66%), Gaps = 4/221 (1%) Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84 ++++ + + + ++ + ++L++ P LL+M+T F R IIVFS+LR +G PPN Sbjct: 37 NMIDDGSGGTKYSLTLQLLALMSVLTLLPSLLLMMTSFVRIIIVFSLLRQALGTAQTPPN 96 Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144 V++ LALF+T ++MSP L + I P QI+ TA+ P FM N TRE D Sbjct: 97 QVLVGLALFLTLFIMSPVLTSVYDDAITPYFEEQISFETAVAAAEAPVRTFMLNQTRESD 156 Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204 + +F+++A NT++ + + + L+P+F+ SEL+ +F IGFLI +PF+IID++VA+ Sbjct: 157 IGMFLEIAD----NTEVIEPADVPFLTLVPAFITSELKSAFSIGFLIYIPFVIIDLVVAS 212 Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++M+MGMMML P IS+PFK++ FVL+DGW+L++ +L SF Sbjct: 213 VLMSMGMMMLSPMMISMPFKLMLFVLVDGWTLIMGSLTASF 253 >gi|307725660|ref|YP_003908873.1| Yop virulence translocation R [Burkholderia sp. CCGE1003] gi|307586185|gb|ADN59582.1| Yop virulence translocation R [Burkholderia sp. CCGE1003] Length = 216 Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 123/206 (59%), Gaps = 2/206 (0%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 + +S+ P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ YVM+P Sbjct: 10 LLIVIVAISLVPFVAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGVAILVSIYVMAP 69 Query: 102 TLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 ++++ + Q T+ EPF F++ +T E++ F+ A+ Sbjct: 70 VGMQAMQSMQGQAIAGQPTQALIQVFSAAREPFRTFLQKHTNEREKRFFIRSANVVWPKE 129 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + +L P+F ++EL +F+IGFL+ + F++ID+I+A +++AMG+ + PT++ Sbjct: 130 AASSLHENDLIVLAPAFTLTELTDAFKIGFLLYIAFIVIDLIIANVLLAMGLNQVTPTNV 189 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 ++PFK++ FV++DGWS L+ LV ++ Sbjct: 190 AIPFKLLLFVVMDGWSTLIHGLVMTY 215 >gi|29840693|ref|NP_829799.1| type III secretion system protein [Chlamydophila caviae GPIC] gi|29835043|gb|AAP05677.1| type III secretion inner membrane protein SctR [Chlamydophila caviae GPIC] Length = 303 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 68/213 (31%), Positives = 119/213 (55%), Gaps = 11/213 (5%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 I L+++P L++++T + + II +LR +G+ PP+ V+ +AL ++ YVM PT Sbjct: 90 IILIFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTG 149 Query: 104 DRSIEMGIQPLMNNQI-----------TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152 + + N I T A+ + EP F+ NT + + F ++ Sbjct: 150 VAMYNDARKEIQGNAIPRDLFSAEGAETVFVALNKSKEPLRSFLIRNTPKAQIQSFYKIS 209 Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 + ++ I+IP+F++ +++ +FEIG LI LPF +ID++ A +++AM MM Sbjct: 210 QKTFPQEIREHMTASDFVIIIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQMM 269 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ML P SISLP K++ V++DGW+LL++ L+ SF Sbjct: 270 MLSPLSISLPLKLLLVVMVDGWTLLLQGLMISF 302 >gi|238787477|ref|ZP_04631275.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia frederiksenii ATCC 33641] gi|238724264|gb|EEQ15906.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia frederiksenii ATCC 33641] Length = 216 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 76/193 (39%), Positives = 115/193 (59%), Gaps = 2/193 (1%) Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRSIEMGIQPL 114 ++M T F + IVFS+LR +G+ VPPN+ I LAL +T ++M+P LD + +PL Sbjct: 24 MVMGTSFLKLSIVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVHARLQDEPL 83 Query: 115 MNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILI 173 N I A P+ F++ NT + F D+ + IL+ Sbjct: 84 PNEIGPLLHHIDEHALGPYRDFLQRNTDAEQTHFFTDIVQTKWPERYRDTIKSNSLLILM 143 Query: 174 PSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDG 233 P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK++ F+LIDG Sbjct: 144 PAFTLSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMVSPITISLPFKLLIFILIDG 203 Query: 234 WSLLVENLVKSFI 246 W LL+ LV S++ Sbjct: 204 WGLLLGQLVGSYL 216 >gi|325920564|ref|ZP_08182486.1| flagellar biosynthetic protein FliP [Xanthomonas gardneri ATCC 19865] gi|325548957|gb|EGD19889.1| flagellar biosynthetic protein FliP [Xanthomonas gardneri ATCC 19865] Length = 279 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 87/224 (38%), Positives = 131/224 (58%), Gaps = 4/224 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 SL +V + ++T + T +++ P +L+++T F R IV +LR +G G Sbjct: 57 SLPNVSVGRIGDQPVSLPLQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQT 116 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 P N V++ L++F+T VM P + G+ P +NNQI +TA +P FM R Sbjct: 117 PSNQVLLGLSMFLTALVMMPVWQKMWGAGLSPYLNNQIDFSTAWTLTTQPLRAFMLAQIR 176 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 E DL F MA D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++ Sbjct: 177 ETDLMTFAGMAGDGK----YAGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLV 232 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 VA+++M+MGMMML P IS PFK++ F+L+DGW L+V L SF Sbjct: 233 VASVLMSMGMMMLSPMLISAPFKILLFILVDGWVLVVGTLAASF 276 >gi|323530325|ref|YP_004232477.1| Yop virulence translocation R [Burkholderia sp. CCGE1001] gi|323387327|gb|ADX59417.1| Yop virulence translocation R [Burkholderia sp. CCGE1001] Length = 216 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 122/206 (59%), Gaps = 2/206 (0%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 + +S+ P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ YVM+P Sbjct: 10 LLIVIVAISLVPFVAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGVAILVSLYVMAP 69 Query: 102 TLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 ++++ + Q T+ EPF F++ +T E++ F+ A+ Sbjct: 70 VGMQAMQSMQGQAIAGQPTQALIQVFSAAREPFRTFLQKHTNEREKRFFIRSANVVWPKD 129 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + +L P+F ++EL +F+IGFL+ + F++ID+I+A +++AMG+ + PT++ Sbjct: 130 AAASLHENDLIVLAPAFTLTELTDAFKIGFLLYIAFIVIDLIIANVLLAMGLNQVTPTNV 189 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 ++PFK++ FV++DGWS L+ LV ++ Sbjct: 190 AIPFKLLLFVVMDGWSTLIHGLVMTY 215 >gi|16082732|ref|NP_395178.1| type III secretion system protein [Yersinia pestis CO92] gi|31795277|ref|NP_857738.1| type III secretion system protein [Yersinia pestis KIM] gi|31795479|ref|NP_857933.1| type III secretion system protein [Yersinia pestis KIM] gi|45478540|ref|NP_995367.1| type III secretion system protein [Yersinia pestis biovar Microtus str. 91001] gi|51593913|ref|YP_068480.1| type III secretion system protein [Yersinia pseudotuberculosis IP 32953] gi|108793660|ref|YP_636810.1| type III secretion system protein [Yersinia pestis Antiqua] gi|145597138|ref|YP_001154602.1| type III secretion system protein [Yersinia pestis Pestoides F] gi|149192695|ref|YP_001293927.1| type III secretion system protein [Yersinia pestis CA88-4125] gi|162417761|ref|YP_001604476.1| type III secretion system protein [Yersinia pestis Angola] gi|165927798|ref|ZP_02223630.1| type III secretion apparatus protein YscR [Yersinia pestis biovar Orientalis str. F1991016] gi|165940058|ref|ZP_02228592.1| type III secretion apparatus protein YscR [Yersinia pestis biovar Orientalis str. IP275] gi|166011710|ref|ZP_02232608.1| type III secretion apparatus protein YscR [Yersinia pestis biovar Antiqua str. E1979001] gi|166214467|ref|ZP_02240502.1| type III secretion apparatus protein YscR [Yersinia pestis biovar Antiqua str. B42003004] gi|167401968|ref|ZP_02307454.1| type III secretion apparatus protein YscR [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422404|ref|ZP_02314157.1| type III secretion apparatus protein YscR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167422439|ref|ZP_02314192.1| type III secretion apparatus protein YscR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167422881|ref|ZP_02314634.1| type III secretion apparatus protein YscR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426865|ref|ZP_02318618.1| type III secretion apparatus protein YscR [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186897578|ref|YP_001874689.1| type III secretion system protein [Yersinia pseudotuberculosis PB1/+] gi|229896860|ref|ZP_04512020.1| putative Yop secretion membrane protein [Yersinia pestis Pestoides A] gi|229900215|ref|ZP_04515351.1| putative Yop secretion membrane protein [Yersinia pestis biovar Orientalis str. India 195] gi|294496839|ref|YP_003560536.1| needle complex export protein [Yersinia pestis Z176003] gi|322836570|ref|YP_004210066.1| type III secretion apparatus protein YscR [Yersinia pestis Java 9] gi|57015234|sp|P69980|YSCR_YERPE RecName: Full=Yop proteins translocation protein R gi|57015235|sp|P69981|YSCR_YERPS RecName: Full=Yop proteins translocation protein R gi|475123|gb|AAA27678.1| yscR [Yersinia pseudotuberculosis] gi|2465659|gb|AAB72201.1| YscR [Yersinia pestis] gi|2996237|gb|AAC62560.1| Yop proteins translocation protein R homolog [Yersinia pestis KIM 10] gi|3822067|gb|AAC69787.1| type III secretion protein [Yersinia pestis KIM 10] gi|5832464|emb|CAB54921.1| putative Yop secretion membrane protein [Yersinia pestis CO92] gi|45357162|gb|AAS58558.1| putative Yop secretion membrane protein YscR [Yersinia pestis biovar Microtus str. 91001] gi|51591610|emb|CAF25414.1| yscR; putative Yop secretion membrane protein [Yersinia pseudotuberculosis IP 32953] gi|108782207|gb|ABG16262.1| Yop secretion membrane protein [Yersinia pestis Antiqua] gi|145212906|gb|ABP42312.1| Yop secretion membrane protein [Yersinia pestis Pestoides F] gi|148872353|gb|ABR14843.1| putative Yop secretion membrane protein [Yersinia pestis CA88-4125] gi|162354781|gb|ABX88728.1| type III secretion apparatus protein YscR [Yersinia pestis Angola] gi|165911968|gb|EDR30611.1| type III secretion apparatus protein YscR [Yersinia pestis biovar Orientalis str. IP275] gi|165920234|gb|EDR37535.1| type III secretion apparatus protein YscR [Yersinia pestis biovar Orientalis str. F1991016] gi|165989317|gb|EDR41618.1| type III secretion apparatus protein YscR [Yersinia pestis biovar Antiqua str. E1979001] gi|166204360|gb|EDR48840.1| type III secretion apparatus protein YscR [Yersinia pestis biovar Antiqua str. B42003004] gi|166958171|gb|EDR55192.1| type III secretion apparatus protein YscR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|166958641|gb|EDR55662.1| type III secretion apparatus protein YscR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|166958676|gb|EDR55697.1| type III secretion apparatus protein YscR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048696|gb|EDR60104.1| type III secretion apparatus protein YscR [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054164|gb|EDR63991.1| type III secretion apparatus protein YscR [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186700604|gb|ACC91232.1| Yop virulence translocation R [Yersinia pseudotuberculosis PB1/+] gi|229686735|gb|EEO78815.1| putative Yop secretion membrane protein [Yersinia pestis biovar Orientalis str. India 195] gi|229700131|gb|EEO88170.1| putative Yop secretion membrane protein [Yersinia pestis Pestoides A] gi|262363850|gb|ACY60570.1| needle complex export protein [Yersinia pestis D106004] gi|262364007|gb|ACY64344.1| needle complex export protein [Yersinia pestis D182038] gi|294352427|gb|ADE66484.1| needle complex export protein [Yersinia pestis Z176003] gi|317374480|gb|ADV16655.1| type III secretion inner membrane protein [Yersinia pestis] gi|321161344|gb|ADW67050.1| type III secretion apparatus protein YscR [Yersinia pestis Java 9] Length = 217 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 71/208 (34%), Positives = 126/208 (60%), Gaps = 2/208 (0%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + + ++L++ P++ +M T F +F +VFS+LR +G+ +PPN+ + LA+ ++ YVM Sbjct: 8 INLIIVLSLLTLLPLISVMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVM 67 Query: 100 SPT--LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +P + + + N + P+ +F++ + + ++ S F+D Sbjct: 68 APVGFATQDYLQANEVSLTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWP 127 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + + IL+P+F +SEL R+FEIGFLI LPF++ID++++ I++AMGMMM+ P Sbjct: 128 KQYADRLESDSLFILLPAFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPM 187 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 +ISLPFK++ FVL+DGW+ L LV S+ Sbjct: 188 TISLPFKLLLFVLLDGWTRLTHGLVISY 215 >gi|238023706|ref|YP_002907938.1| type III secretion system protein [Burkholderia glumae BGR1] gi|237878371|gb|ACR30703.1| Type III secretion-associated protein [Burkholderia glumae BGR1] Length = 216 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 123/206 (59%), Gaps = 2/206 (0%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 + +S+ P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ YVM+P Sbjct: 10 LLLVVIAISLLPFVAMVVTSYAKVVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYVMAP 69 Query: 102 TLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 ++ + + +Q ++ A EPF F+ +T+E++ F+ A Sbjct: 70 IGMQASKSLEGQQLASQPSQALIQAFGAAREPFRAFLEKHTQEREKRFFLRSAAVVWPKE 129 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + +L PSF +SEL +F+IGFL+ + F+++D+I+A +++A+G+ + PT++ Sbjct: 130 QAQQLSEHDLIVLAPSFTLSELTDAFKIGFLLYIAFIVVDLIIANVLLALGLNQVTPTNV 189 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 ++PFK++ FV++DGWS L+ LV ++ Sbjct: 190 AIPFKLLLFVVMDGWSTLIHGLVMTY 215 >gi|315126005|ref|YP_004068008.1| flagellar biosynthesis protein FliP [Pseudoalteromonas sp. SM9913] gi|315014519|gb|ADT67857.1| flagellar biosynthesis protein FliP [Pseudoalteromonas sp. SM9913] Length = 250 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 82/245 (33%), Positives = 136/245 (55%), Gaps = 4/245 (1%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 + + + L P + A+ + AD + ++ + T+LS+ P LL+++T Sbjct: 6 IFKVSLLLIMLFIPSWLNAEELTLFSLKDTADGQDYSVKLQILLLMTVLSLLPALLMVLT 65 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R IIV +ILR MG+ PPN ++I ++L +T +M P + P I Sbjct: 66 SFTRIIIVLAILRQAMGLQQSPPNKILIGISLMLTMLIMRPVWQDIYQNAYTPFQQQTIG 125 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A+ +P FM TRE +L + +A+ + I + +L+P+F++SE Sbjct: 126 LEDALLTAEKPLRAFMLRQTRESELRQVLLIANEP----TTLTAEEIPFEVLMPAFVLSE 181 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L +F+IGF++ +PFLIID++V++++M+MGMMML P ISLPFK++ FVL DGWS++ Sbjct: 182 LTTAFQIGFMLFIPFLIIDLVVSSVLMSMGMMMLSPLIISLPFKLMVFVLADGWSMIAGT 241 Query: 241 LVKSF 245 L +F Sbjct: 242 LAATF 246 >gi|299069226|emb|CBJ40486.1| Hypersensitivity response secretion protein hrcR, type III secretion system [Ralstonia solanacearum CMR15] Length = 217 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 58/208 (27%), Positives = 119/208 (57%), Gaps = 4/208 (1%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 + +++ P ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ +VM+P Sbjct: 9 LIVMAVAIALLPFAAMVVTSYTKIVVVLGLLRNALGVQQVPPNMVLNGIAMIVSCFVMAP 68 Query: 102 TLDRSIEMGIQPLMNNQITETTA----IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +++ L T T + +PF F+ +T ++ + FM A Sbjct: 69 VGMEAMQRAHVQLNAQGGTTITQVMPLLDAARDPFREFLNKHTNPREKAFFMRSAQQLWP 128 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + + +L P+F ++EL +F IGFL+ L F++ID+++A ++MA+G+ + P+ Sbjct: 129 PAKAAQLKDDDLIVLAPAFTLTELTSAFRIGFLLYLVFIVIDLVIANLLMALGLSQVTPS 188 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++++PFK++ FV++DGWS+LV LV ++ Sbjct: 189 NVAIPFKLLLFVVMDGWSVLVHGLVNTY 216 >gi|320107033|ref|YP_004182623.1| flagellar biosynthetic protein FliP [Terriglobus saanensis SP1PR4] gi|319925554|gb|ADV82629.1| flagellar biosynthetic protein FliP [Terriglobus saanensis SP1PR4] Length = 271 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 71/193 (36%), Positives = 118/193 (61%), Gaps = 4/193 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P +++ +T R ++VF LR +G + P N V+++L L MT++++ P + + + I Sbjct: 83 PAIILAMTPMVRLLVVFHFLRQALGTQTAPSNQVLMALGLMMTWFLIQPVVVQIEQQAIA 142 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P IT + R + P ++ REKDL+LF S T + I RI+ Sbjct: 143 PYRAETITLEECMDRTSVPIKQYLLKYAREKDLALFASAGMSIRPQTRL----DIPLRIV 198 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 IP++++SEL+ F+IG ++ LPFL+ID++VA+I ++GM+ LPP IS P K++ FV++D Sbjct: 199 IPAYILSELKAGFQIGAVLFLPFLLIDLVVASITTSVGMLQLPPVVISTPIKILLFVMVD 258 Query: 233 GWSLLVENLVKSF 245 GW+LL +L+KSF Sbjct: 259 GWNLLAGSLLKSF 271 >gi|94496750|ref|ZP_01303325.1| Type III secretory pathway, component EscR [Sphingomonas sp. SKA58] gi|94423763|gb|EAT08789.1| Type III secretory pathway, component EscR [Sphingomonas sp. SKA58] Length = 216 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 73/205 (35%), Positives = 127/205 (61%), Gaps = 1/205 (0%) Query: 43 FGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT 102 + ++++AP +MVT F + ++V S+LR +G+ VPPN+V+ +AL ++ YVM PT Sbjct: 12 LVVVVLIALAPFFAVMVTSFTKIVVVLSLLRNALGLQQVPPNVVLNGMALVLSVYVMYPT 71 Query: 103 LDRSIEMGIQPLMNNQITET-TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161 + + Q + +Q +E +A R EP F+ ++ + + F+ + + Sbjct: 72 MQQMAAASGQQAVPSQTSEIFSAADRAKEPLRAFLIKHSAADERAFFLRTQQRVAKQSGT 131 Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221 ++ +++P+F++ EL +F+IGFLI LPFL+ID++++ I++AMGMMML P +ISL Sbjct: 132 QAASATDFIVVVPAFVVRELTVAFQIGFLIFLPFLVIDLVISNILLAMGMMMLSPVTISL 191 Query: 222 PFKVIFFVLIDGWSLLVENLVKSFI 246 PFK++ FVL+DGW L LV S++ Sbjct: 192 PFKILLFVLVDGWVKLSHGLVLSYV 216 >gi|238764052|ref|ZP_04625007.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia kristensenii ATCC 33638] gi|238697723|gb|EEP90485.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia kristensenii ATCC 33638] Length = 216 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 81/208 (38%), Positives = 127/208 (61%), Gaps = 2/208 (0%) Query: 41 RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100 + + ILS+ P+L++M T F + IVFS+LR +G+ VPPN+ I LAL +T ++M+ Sbjct: 9 QLIVLLFILSLLPLLVVMGTSFLKLSIVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA 68 Query: 101 PT-LDRSIEMGIQPLMNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 P LD + +PL N+ I A P+ F++ NT + ++ F D+ + Sbjct: 69 PVGLDVHARLQDEPLPNDIGALLHHIDESALGPYRDFLQRNTDAEQVNFFNDIVKTKWPE 128 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 IL+P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P + Sbjct: 129 RYRDTIKPNSLLILMPAFTLSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMVSPIT 188 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSFI 246 ISLPFK++ F+LIDGW LL+ LV S++ Sbjct: 189 ISLPFKLLIFILIDGWGLLLGQLVGSYL 216 >gi|114798811|ref|YP_758976.1| flagellar biosynthesis protein FliP [Hyphomonas neptunium ATCC 15444] gi|114738985|gb|ABI77110.1| flagellar biosynthetic protein FliP [Hyphomonas neptunium ATCC 15444] Length = 252 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 86/227 (37%), Positives = 144/227 (63%), Gaps = 5/227 (2%) Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 A ++L ++N D +S+ +V+ + T+LS+ P + +MVTC P +IVFS +R +G+ Sbjct: 29 APAALDGLLNPSGDGQLSSSVVQLVLLVTVLSLVPGIAMMVTCLPFMVIVFSFMRQAIGV 88 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 PPN++I++LA+F+TF+VM P + E GI P M+ + E A +PF FM Sbjct: 89 QQAPPNMMIMALAMFLTFFVMEPVFMSAWENGISPYMDGVLDEQQAWALSTDPFRAFMMQ 148 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 T + L + N + + + + +L +FM+SE++ +F+IGF+I LPF++I Sbjct: 149 RTDPEAL-----LTLGDAVNRPVVEGEDPAFSLLATAFMLSEIKHAFQIGFVIFLPFMVI 203 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 D++VA+++MA+GMMM+PPT +SLPFK+ FFVL DGW + E +++ + Sbjct: 204 DLVVASVLMAVGMMMVPPTVVSLPFKLGFFVLADGWLKITEAVLRGY 250 >gi|315186373|gb|EFU20133.1| flagellar biosynthetic protein FliP [Spirochaeta thermophila DSM 6578] Length = 258 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 74/197 (37%), Positives = 118/197 (59%), Gaps = 6/197 (3%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +L++ T F R +V +R +G+ VPP V++ ++LF+T +VM PT + Sbjct: 66 APSILVLTTSFLRIALVLDFIRRALGLQQVPPTQVLMGISLFLTLFVMWPTFQEVYDDSF 125 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTRE--KDLSLFMDMAHSSHRNTDITKNDHIEY 169 PL +I A R P +FM + + + LFM M+ +T + Sbjct: 126 VPLSRGEIDVEEAYGRAVGPLRIFMYRQMQNNVEPIRLFMRMSGLPRPDTLA----DVPT 181 Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229 ILIP+F++ EL +F+IG ++ +PF+IIDM+VA+ +M+MGM+MLPP IS PFK++ FV Sbjct: 182 HILIPAFILHELTVAFKIGIILYIPFIIIDMVVASTLMSMGMIMLPPVMISFPFKLLLFV 241 Query: 230 LIDGWSLLVENLVKSFI 246 L+DGW+L+ + L+ SF+ Sbjct: 242 LVDGWTLITQQLLGSFV 258 >gi|254255057|ref|ZP_04948374.1| Type III secretory pathway component EscR [Burkholderia dolosa AUO158] gi|124899702|gb|EAY71545.1| Type III secretory pathway component EscR [Burkholderia dolosa AUO158] Length = 278 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 61/212 (28%), Positives = 121/212 (57%), Gaps = 5/212 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + G+ +S+ P +L TC+ +F IVF I+R +G+ VP NLV+ ++AL M+ +VM Sbjct: 62 IAMIGLLAFVSLLPFVLAAGTCYLKFSIVFVIVRNAIGLQQVPSNLVLNAVALMMSIFVM 121 Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA---HS 154 P + + ++ ++ + + + +++ + + + F + Sbjct: 122 MPVGKAIYDQQLDNPVDFTSRESVQQFVDGGLGGYRQYLQRYSDPELTAFFQKIQVDRAV 181 Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214 + ++ L+P++ +SE++ +F+IGF I LPF+I+D++V+++++A+GMMM+ Sbjct: 182 DADHAADASDEEPAIAALLPAYALSEIKSAFKIGFYIYLPFIIVDLVVSSVLLALGMMMM 241 Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 P IS+P K+I FV +DGWS+L + LVK ++ Sbjct: 242 SPVVISVPIKLILFVSLDGWSILSKGLVKQYL 273 >gi|119503675|ref|ZP_01625758.1| flagellar biosynthetic protein [marine gamma proteobacterium HTCC2080] gi|119460737|gb|EAW41829.1| flagellar biosynthetic protein [marine gamma proteobacterium HTCC2080] Length = 248 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 89/241 (36%), Positives = 145/241 (60%), Gaps = 6/241 (2%) Query: 7 FALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPR 64 FL+ + ++++ V +P S + ++ + T+L++ P +LI +T F R Sbjct: 10 VLAFLLPESAMAQQATIPLVSTMPNANGGSDYALGIQILLVMTVLTLLPAMLITMTSFTR 69 Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124 +IV +ILR MG P N +I+ L+LF++ ++M+P D + ++P ++ A Sbjct: 70 VLIVLAILRQAMGTAQTPSNQIILGLSLFLSLFIMAPVFDVAWTTALKPFLDGGTDFEGA 129 Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184 ++ PF FM TR+ DL++F +M D + +L+PSF++SEL+ + Sbjct: 130 LEAAKIPFREFMFTQTRDSDLTMFAEMGG----YGAFASQDDVPMFVLLPSFLVSELKTA 185 Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 F+IGFL+ +PFL+ID++VA I+MAMGMMML P ISLPFK++ FVLIDGW+L+ LV+S Sbjct: 186 FQIGFLLFVPFLVIDLVVAAILMAMGMMMLSPIIISLPFKLMLFVLIDGWALVTSTLVRS 245 Query: 245 F 245 F Sbjct: 246 F 246 >gi|238752375|ref|ZP_04613853.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia rohdei ATCC 43380] gi|238709416|gb|EEQ01656.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia rohdei ATCC 43380] Length = 216 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 82/208 (39%), Positives = 125/208 (60%), Gaps = 2/208 (0%) Query: 41 RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100 + + ILS+ P+L++M T F + IVFS+LR +G+ VPPN+ I LAL +T ++M+ Sbjct: 9 QLIVLLFILSLLPLLMVMGTSFLKLSIVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA 68 Query: 101 PT-LDRSIEMGIQPLMNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 P LD + +PL N I A EP+ F++ NT + F D+ + Sbjct: 69 PVGLDVHARLQDEPLPNEIGALLHHIDEHALEPYRDFLQRNTDVEQAKFFNDIVQTKWPE 128 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 IL+P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P + Sbjct: 129 RYRDTIKSNSLLILMPAFTLSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMVSPIT 188 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSFI 246 ISLPFK++ F+LIDGW LL+ LV S++ Sbjct: 189 ISLPFKLLIFILIDGWGLLLGQLVGSYL 216 >gi|307718614|ref|YP_003874146.1| hypothetical protein STHERM_c09260 [Spirochaeta thermophila DSM 6192] gi|306532339|gb|ADN01873.1| hypothetical protein STHERM_c09260 [Spirochaeta thermophila DSM 6192] Length = 258 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 74/197 (37%), Positives = 118/197 (59%), Gaps = 6/197 (3%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 AP +L++ T F R +V +R +G+ VPP V++ ++LF+T +VM PT + Sbjct: 66 APSILVLTTSFLRIALVLDFIRRALGLQQVPPTQVLMGISLFLTLFVMWPTFQEVYDDSF 125 Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTRE--KDLSLFMDMAHSSHRNTDITKNDHIEY 169 PL +I A R P +FM + + + LFM M+ +T + Sbjct: 126 VPLSRGEIGVEEAYGRAVGPLRIFMYRQMQNDVEPIRLFMRMSGLPRPDTLA----DVPT 181 Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229 ILIP+F++ EL +F+IG ++ +PF+IIDM+VA+ +M+MGM+MLPP IS PFK++ FV Sbjct: 182 HILIPAFILHELTVAFKIGIILYIPFIIIDMVVASTLMSMGMIMLPPVMISFPFKLLLFV 241 Query: 230 LIDGWSLLVENLVKSFI 246 L+DGW+L+ + L+ SF+ Sbjct: 242 LVDGWTLITQQLLGSFV 258 >gi|1648936|gb|AAB17684.1| putative [Sinorhizobium fredii] Length = 249 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 69/192 (35%), Positives = 114/192 (59%), Gaps = 2/192 (1%) Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115 ++ T F + +V ++R +G ++PPN+V+ + AL +T +V +P +++ + P + Sbjct: 52 VVTTTAFVKVSVVLFLVRNALGTQTIPPNIVLYAAALILTMFVSAPIAEQTYDRITDPRL 111 Query: 116 NNQ--ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILI 173 Q A + ++P ++ T E+ F+ + ++ IL+ Sbjct: 112 RYQSLDDWAEAAKAGSQPLLEHLKKFTNEEQRRFFLSSTEKVWPEEMRARVTADDFAILV 171 Query: 174 PSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDG 233 PSF+ISEL+R+FEIGFL+ LPF++ID+IV TI+MAMGM M+ PT I++PFK+ FV IDG Sbjct: 172 PSFLISELKRAFEIGFLLYLPFIVIDLIVTTILMAMGMSMVSPTIIAVPFKLFLFVAIDG 231 Query: 234 WSLLVENLVKSF 245 WS L+ LV S+ Sbjct: 232 WSRLMHGLVLSY 243 >gi|17549081|ref|NP_522421.1| type III secretion system protein [Ralstonia solanacearum GMI1000] gi|2494568|sp|Q52488|HRCR_RALSO RecName: Full=Hypersensitivity response secretion protein hrcR gi|6066701|emb|CAB58247.1| HrpT protein [Ralstonia solanacearum] gi|17431332|emb|CAD18011.1| hrp conserved hrcr transmembrane protein [Ralstonia solanacearum GMI1000] gi|219566950|dbj|BAH04981.1| Hrp conserved transmembrane protein [Ralstonia solanacearum] gi|1097280|prf||2113360F hrpT gene Length = 217 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 119/208 (57%), Gaps = 4/208 (1%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 + +++ P ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ +VM+P Sbjct: 9 LIVMAVAIALLPFAAMVVTSYTKIVVVLGLLRNALGVQQVPPNMVLNGIAMIVSCFVMAP 68 Query: 102 TLDRSIEMGIQPLMNNQITETTA----IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +++ + T T + +PF F+ +T ++ + FM A Sbjct: 69 VGMEAMQRAHVQINAQGGTNITQVMPLLDAARDPFREFLNKHTNAREKAFFMRSAQQLWP 128 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + + +L P+F ++EL +F IGFL+ L F++ID+++A ++MA+G+ + P+ Sbjct: 129 PAKAAQLKDDDLIVLAPAFTLTELTSAFRIGFLLYLAFIVIDLVIANLLMALGLSQVTPS 188 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++++PFK++ FV++DGWS+L+ LV ++ Sbjct: 189 NVAIPFKLLLFVVMDGWSVLIHGLVNTY 216 >gi|21242688|ref|NP_642270.1| flagellar biosynthesis protein FliP [Xanthomonas axonopodis pv. citri str. 306] gi|21108161|gb|AAM36806.1| flagellar biosynthetic protein [Xanthomonas axonopodis pv. citri str. 306] Length = 262 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 89/224 (39%), Positives = 132/224 (58%), Gaps = 4/224 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 SL +V + ++T + T +++ P +L+++T F R IV +LR +G G Sbjct: 40 SLPNVSVGRIGDQPVSLPLQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQT 99 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 P N V++ LA+F+T VM P + G+QP +NNQI +TA +P FM R Sbjct: 100 PSNQVLLGLAMFLTALVMMPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIR 159 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 E DL F MA D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++ Sbjct: 160 ETDLMTFAGMAGDGK----YAGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLV 215 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 VA+++M+MGMMML P IS PFK++ F+L+DGW L+V L SF Sbjct: 216 VASVLMSMGMMMLSPMLISAPFKILLFILVDGWVLVVGTLAASF 259 >gi|171320712|ref|ZP_02909725.1| flagellar biosynthetic protein FliP [Burkholderia ambifaria MEX-5] gi|171094039|gb|EDT39137.1| flagellar biosynthetic protein FliP [Burkholderia ambifaria MEX-5] Length = 259 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 81/214 (37%), Positives = 135/214 (63%), Gaps = 4/214 (1%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 D ++ VR + T+LSI P L++ +T F R +IV S++R GM PP V+ISLA Sbjct: 49 DRDGASEAVRIAVLLTLLSIGPALVVSMTAFIRIVIVLSMIRHAFGMPETPPTPVLISLA 108 Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 LF+T +VM P D +QP M+ +I A++ A P FM R+ +L L ++ Sbjct: 109 LFLTAFVMMPAFDTLHHDALQPFMDGRIAVDRALELGAAPLRDFMLRQVRDDELRLMYEL 168 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + + D + L P+F+++ELR +F+IGF+++LPFL++D++V+T+++++GM Sbjct: 169 SRKPLPD----SADEVGLLQLTPAFILNELRVAFQIGFVVLLPFLLLDLVVSTVLLSLGM 224 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +M+PP++ISLP K++ FVLIDGW L++ ++ F Sbjct: 225 LMVPPSTISLPLKILMFVLIDGWGLVMRGVLGGF 258 >gi|300871793|ref|YP_003786666.1| flagellar biosynthesis protein FliP [Brachyspira pilosicoli 95/1000] gi|300689494|gb|ADK32165.1| flagellar biosynthesis protein, FliP [Brachyspira pilosicoli 95/1000] Length = 266 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 88/253 (34%), Positives = 145/253 (57%), Gaps = 12/253 (4%) Query: 5 CFFALFLVTPELVFAKSSLH-----DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 L L P +FA++ + + + ++ + TILS++P ++IM Sbjct: 13 VIVILCLFAPITLFAQTQIPIPTIGLNVTQAQTPQQVSLGLQVLFLLTILSLSPSIIIMT 72 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T F R IV S ++ + + PP +I+ L+LF+TF++M PTL + +QP +N I Sbjct: 73 TSFVRVSIVLSFVQRALSLQETPPRALIMGLSLFLTFFIMMPTLTQINNEALQPYLNGTI 132 Query: 120 TETTAIQRVAEPFWVFMRNNTR----EKDLSLFMDMAHSSHRNTDITKNDH---IEYRIL 172 R +P +FM N+ R K L LF+ ++ ++ R DI + I ++ Sbjct: 133 GVNDLYSRGIQPIRMFMFNSLRGENGMKSLDLFLSISDTNVRLRDIQSVEDLAKIPTIVV 192 Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232 +P+F+I+EL +F++G + +PF++ID++VA+I+MAMGM+MLPP ISLP K+I FV +D Sbjct: 193 VPAFIINELTIAFKMGIYLFVPFIVIDLVVASILMAMGMIMLPPIMISLPLKIILFVAVD 252 Query: 233 GWSLLVENLVKSF 245 GW LL+ LV+SF Sbjct: 253 GWKLLILQLVQSF 265 >gi|225619290|ref|YP_002720516.1| flagellar biosynthesis protein FliP [Brachyspira hyodysenteriae WA1] gi|225214109|gb|ACN82843.1| flagellar biosynthesis protein FliP [Brachyspira hyodysenteriae WA1] Length = 257 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 87/255 (34%), Positives = 146/255 (57%), Gaps = 14/255 (5%) Query: 5 CFFALFLVTPELVFAKS-------SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLI 57 F L L+ P +A+ ++ + + ++ + TILS++P ++I Sbjct: 2 VFLVLCLLIPAAAYAQDNTKIPIPTIGLNVTQAQTPQQVSLGLQILFLLTILSLSPSIII 61 Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 M T F R IV S ++ + + PP +I+ L+LF+TF++M PTL + +QP +N Sbjct: 62 MTTSFIRVSIVLSFVQRALSLQETPPRALIMGLSLFLTFFIMMPTLTQVNNEALQPYLNG 121 Query: 118 QITETTAIQRVAEPFWVFMRNNTR----EKDLSLFMDMAHSSHRNTDITKNDH---IEYR 170 I R +P +FM N+ R K L LF+ ++++ R +I D I Sbjct: 122 TIGVNELYSRGIQPIRMFMFNSLRGENGMKSLDLFLSISNTDIRLREIQTVDDLNRIPTI 181 Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230 +++P+F+I+EL +F++G + +PF++ID++VA+I+MAMGM+MLPP ISLP K+I FV Sbjct: 182 VVVPAFIINELTIAFKMGIYLFIPFIVIDLVVASILMAMGMIMLPPIMISLPLKIILFVA 241 Query: 231 IDGWSLLVENLVKSF 245 +DGW LL+ +V+SF Sbjct: 242 VDGWKLLILQIVQSF 256 >gi|225871936|ref|YP_002753390.1| flagellar biosynthetic protein FliP [Acidobacterium capsulatum ATCC 51196] gi|225794472|gb|ACO34562.1| flagellar biosynthetic protein FliP [Acidobacterium capsulatum ATCC 51196] Length = 228 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 75/204 (36%), Positives = 118/204 (57%), Gaps = 4/204 (1%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 + T++++ P +LI +T R ++VF LR +G + P N V++ L L MT+++M P Sbjct: 29 IVIVLTLITVLPAILISITPMVRLLVVFHFLRQALGTQTAPSNQVLLGLGLMMTWFLMQP 88 Query: 102 TLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161 L + + ++P QI+ A++R P FM EKDL LF + T Sbjct: 89 VLTQIDQQAVEPYRAGQISGMQALERATAPPKAFMLRYASEKDLELFAAASMVKRPATRA 148 Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221 + +IP++M+SEL+ FEIG ++ LPFL++DM+VA I ++GM LPP IS Sbjct: 149 ----DLPLSAVIPAYMLSELKAGFEIGAILFLPFLLVDMVVAAITTSIGMFQLPPVVIST 204 Query: 222 PFKVIFFVLIDGWSLLVENLVKSF 245 P K++ FV++DGW LL +L+KSF Sbjct: 205 PLKILLFVMVDGWHLLAASLLKSF 228 >gi|297620337|ref|YP_003708474.1| type III secretion inner membrane protein SctR [Waddlia chondrophila WSU 86-1044] gi|297375638|gb|ADI37468.1| type III secretion inner membrane protein SctR [Waddlia chondrophila WSU 86-1044] Length = 296 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 72/218 (33%), Positives = 125/218 (57%), Gaps = 11/218 (5%) Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98 ++ + TILS+ P +++++T F + +IV S+LR +G+ PPN +I + L ++ ++ Sbjct: 78 LITQAAVLTILSMLPFIVMILTSFMKIVIVLSLLRNALGVQQAPPNQIINGVGLMLSMFI 137 Query: 99 MSPTLDRSIEMGIQPLMNNQITET-----------TAIQRVAEPFWVFMRNNTREKDLSL 147 M PT+ E+ + Q ++ T EP F+ +N+ + +L Sbjct: 138 MYPTVVEMYEVSQKATQEMQAPDSVISSGSSTYILTIADATKEPLRTFLIDNSSVRHRAL 197 Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 F MA+ ++ I++PSF+ S+L+ +FEIG LI +PF +ID++ + I++ Sbjct: 198 FFRMAYKVLPEKYRPNLKPEDFIIVVPSFITSQLKDAFEIGVLIYIPFFVIDLVTSNILL 257 Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 AMGMMML P +IS+P K+ V++DGW+LLVE LV +F Sbjct: 258 AMGMMMLSPVTISMPLKLFLLVMLDGWTLLVEGLVNTF 295 >gi|154249381|ref|YP_001410206.1| flagellar biosynthesis protein FliP [Fervidobacterium nodosum Rt17-B1] gi|154153317|gb|ABS60549.1| flagellar biosynthetic protein FliP [Fervidobacterium nodosum Rt17-B1] Length = 251 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 82/251 (32%), Positives = 135/251 (53%), Gaps = 8/251 (3%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHD-----VMNIPADLSISTWIVRTFGIFTILSIAPIL 55 M R+ + +F++ + + + I T+L++AP + Sbjct: 1 MKRFFTILFLIFLISSIFSQDEVPIPGISIQVTPTQQPRDLVATLEILLILTVLTLAPSI 60 Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115 LI+ T F R IIVFS R +G VPPN V+I LAL +TF++M PT + + P M Sbjct: 61 LILFTSFTRIIIVFSFTRNALGTRQVPPNQVLIGLALILTFFIMQPTWNEINTNALTPYM 120 Query: 116 NNQITETTAIQRVAEPFWVFMRN-NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174 + +IT R FM N + +A++ +N +TK + +L Sbjct: 121 DGKITYQEFFSRTMASVRKFMINELVNHHNEDNVFTIANALKQN--VTKIEEAPDSLLTA 178 Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234 +F++ E+ F++G LI +PF++IDM+VA+I++++GM+M+PP +SLPFKV+ FVL +GW Sbjct: 179 AFVLGEVEIGFKMGILIYIPFIVIDMVVASILLSLGMIMIPPVLVSLPFKVLVFVLANGW 238 Query: 235 SLLVENLVKSF 245 ++ +LVKSF Sbjct: 239 ESIIVSLVKSF 249 >gi|45435136|gb|AAS60696.1| putative type III secretion apparatus protein [Yersinia pestis biovar Microtus str. 91001] Length = 201 Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 74/201 (36%), Positives = 121/201 (60%), Gaps = 2/201 (0%) Query: 48 ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107 +LS+ P+L++M T F + +VFS+LR +G+ VPPN+ I LAL +T ++M+P Sbjct: 1 MLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQ 60 Query: 108 EMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165 ++N I Q P+ F++ NT + ++ F D+ + Sbjct: 61 ARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVK 120 Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225 IL+P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P ++SLPFK+ Sbjct: 121 PDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKL 180 Query: 226 IFFVLIDGWSLLVENLVKSFI 246 + FVL+DGWSL++ LV S++ Sbjct: 181 LVFVLVDGWSLVLGQLVGSYL 201 >gi|91791432|ref|YP_561083.1| flagellar biosynthesis protein FliP [Shewanella denitrificans OS217] gi|91713434|gb|ABE53360.1| flagellar biosynthetic protein FliP [Shewanella denitrificans OS217] Length = 229 Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 80/207 (38%), Positives = 127/207 (61%), Gaps = 4/207 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 +R + L++ P+ +I +T F R IIV S++R +G+ PPN V+I+L+LF+T + M Sbjct: 27 LRIVLAVSSLTLIPVFVIAMTAFTRIIIVLSLVRQALGLQQTPPNSVLIALSLFLTIFAM 86 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 S ++ + P N I + A+ EP FM + T E +DMA + Sbjct: 87 SGVFEQINNKALLPYANGSIELSAAVSNGIEPLKGFMLSQTDEVHFIRVLDMAKVPVPQS 146 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + L+P+FM+SEL +F++ FLI LPFL+ID++VA+ +MA+GM+M+PP ++ Sbjct: 147 SA----DVSLTHLVPAFMLSELTLAFKMAFLIFLPFLMIDLLVASCLMALGMIMVPPITV 202 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246 SLP K++ FVLIDGWSL+ +LV+SF+ Sbjct: 203 SLPLKIMVFVLIDGWSLITGSLVQSFM 229 >gi|330819399|ref|YP_004348261.1| Type III secretion inner membrane protein SctR [Burkholderia gladioli BSR3] gi|327371394|gb|AEA62749.1| Type III secretion inner membrane protein SctR [Burkholderia gladioli BSR3] Length = 216 Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 122/206 (59%), Gaps = 2/206 (0%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 + +S+ P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ YVM+P Sbjct: 10 LLLVVIAISLLPFVAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSIYVMAP 69 Query: 102 TLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 ++ + + +Q ++ A EPF F+ +T E++ F+ A Sbjct: 70 IGMQASKALEGQQLASQPSQALIQAFGAAKEPFRAFLVKHTAEREKRFFLRSAAVVWPKE 129 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + +L PSF +SEL +F+IGFL+ + F+++D+I+A +++A+G+ + PT++ Sbjct: 130 QAQQLSENDLIVLAPSFTLSELTDAFKIGFLLYIAFIVVDLIIANVLLALGLNQVTPTNV 189 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 ++PFK++ FV++DGWS L+ LV ++ Sbjct: 190 AIPFKLLLFVVMDGWSTLIHGLVMTY 215 >gi|194292014|ref|YP_002007921.1| type III secretion system protein [Cupriavidus taiwanensis LMG 19424] gi|193225918|emb|CAQ71865.1| SctR: non flagellar T3S system inner membrane conserved protein. FliP/mopC/spaP family [Cupriavidus taiwanensis LMG 19424] Length = 219 Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 73/210 (34%), Positives = 121/210 (57%), Gaps = 4/210 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V I IAP + +MVT + + +IVF +LR +G+ VPPN+V+ +A+ +T Y+M Sbjct: 9 VLILTIILTFGIAPFVALMVTSYTKLVIVFGLLRAALGLQQVPPNMVLNGIAIILTAYIM 68 Query: 100 SPT----LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSS 155 +P D N T V+ P F+ +T E++ + F+ A Sbjct: 69 APIGSDAFDAIKRRADANAAFNVNDVVTVYDAVSGPLKEFLVKHTEERNRTFFVQSAKRI 128 Query: 156 HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215 + +LIPSF +SEL R+F+IGF++ L F+++D+IVA I++A+GM M+ Sbjct: 129 WPEGRADDLKSDDMMVLIPSFTLSELTRAFQIGFVVYLVFVVVDLIVAAILLALGMSMVA 188 Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 PT+IS+PFK++ FV+++GW+ L++ LV S+ Sbjct: 189 PTTISVPFKLLLFVMLEGWTQLIQGLVLSY 218 >gi|310823554|ref|YP_003955912.1| type III secretion apparatus protein yscr/hrcr [Stigmatella aurantiaca DW4/3-1] gi|309396626|gb|ADO74085.1| Type III secretion apparatus protein YscR/HrcR [Stigmatella aurantiaca DW4/3-1] Length = 206 Score = 169 bits (427), Expect = 5e-40, Method: Composition-based stats. Identities = 67/205 (32%), Positives = 127/205 (61%), Gaps = 2/205 (0%) Query: 43 FGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT 102 + +LS+ P ++M+T F + +V S+ R+ MG PP +V+ LA ++ ++MSP Sbjct: 1 MAVLAVLSLLPFAVVMLTSFSKIAVVLSLARSAMGTQQAPPTVVLTGLAAVLSAHIMSPV 60 Query: 103 LDRSIEMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD 160 + R E+G + + + A++R AEP F+ + ++ S F+++A + Sbjct: 61 MARMYEVGREAARDAESGAQILAAVERTAEPLRAFLVKHGSAEERSRFVELARELRPPEE 120 Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220 T+ + +++P+F+I+EL+ +F++GFL+ LPFL++DM++A I++A+GM L P+ +S Sbjct: 121 ATQVQEGDLFVVVPAFVITELKEAFQMGFLLFLPFLVLDMVIANILLALGMQSLSPSQVS 180 Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245 LPFK++ FV +DGW LL + L++ + Sbjct: 181 LPFKILLFVTVDGWPLLAQGLIQGY 205 >gi|300693806|ref|YP_003749779.1| hypersensitivity response secretion protein hrcr, type III secretion system [Ralstonia solanacearum PSI07] gi|299075843|emb|CBJ35152.1| Hypersensitivity response secretion protein hrcR, type III secretion system [Ralstonia solanacearum PSI07] Length = 217 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 118/208 (56%), Gaps = 4/208 (1%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 + +++ P ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ ++M+P Sbjct: 9 LIVMAVAIALLPFAAMVVTSYTKIVVVLGLLRNALGVQQVPPNMVLNGIAMIVSCFIMAP 68 Query: 102 TLDRSIEMGIQPLMNNQITETTA----IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +++ + T T + +PF F+ +T ++ + FM A Sbjct: 69 VGMEAMQRAHVQINAQGGTNITQVMPLLDAARDPFREFLNKHTNAREKAFFMRSAQQLWP 128 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + +L P+F ++EL +F IGFL+ L F++ID+++A ++MA+G+ + P+ Sbjct: 129 PAKAALLKDDDLIVLAPAFTLTELTSAFRIGFLLYLAFIVIDLVIANLLMALGLSQVTPS 188 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++++PFK++ FV++DGWS+LV LV ++ Sbjct: 189 NVAIPFKLLLFVVMDGWSVLVHGLVNTY 216 >gi|238785155|ref|ZP_04629149.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia bercovieri ATCC 43970] gi|238713970|gb|EEQ05988.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia bercovieri ATCC 43970] Length = 216 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 74/193 (38%), Positives = 117/193 (60%), Gaps = 2/193 (1%) Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRSIEMGIQPL 114 ++M T F + IVFS+LR +G+ VPPN+ I LAL +T ++M+P LD + +PL Sbjct: 24 VVMGTSFLKLSIVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVHARLQDEPL 83 Query: 115 MNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILI 173 N I + A P+ F++ NT + + F D+ + IL+ Sbjct: 84 PNEIGALLEHIDKHALGPYRDFLQRNTDAEQATFFNDIVQTKWPERLRDSVKPSSLLILM 143 Query: 174 PSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDG 233 P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK++ F+L++G Sbjct: 144 PAFTLSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMVSPITISLPFKLLIFILVNG 203 Query: 234 WSLLVENLVKSFI 246 W LL+ LV S++ Sbjct: 204 WGLLMGQLVGSYL 216 >gi|226225725|ref|YP_002759831.1| flagellar biosynthetic protein FliP [Gemmatimonas aurantiaca T-27] gi|226088916|dbj|BAH37361.1| flagellar biosynthetic protein FliP [Gemmatimonas aurantiaca T-27] Length = 255 Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats. Identities = 78/185 (42%), Positives = 115/185 (62%), Gaps = 4/185 (2%) Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R +IV L+ MG S PP ++ +AL +T +VM PTL I P ++ QIT Sbjct: 74 GFTRILIVLQFLKQAMGTQSAPPGALLAGMALLLTGFVMGPTLSEVNRTAITPWLDGQIT 133 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 + ++ +P FM TR+ D+ F+ ++ NT D + +L+ +F+ SE Sbjct: 134 QVEMMKTGVQPLRTFMLKQTRQSDVETFVKLSRMPQPNT----VDDVPLHVLMSAFVASE 189 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 LR +F+IGF I LPF+IID +VA+++M+MGM MLPP ISLPFK++ FVL+DGWSL + + Sbjct: 190 LRTAFQIGFAIYLPFIIIDAVVASVLMSMGMFMLPPAMISLPFKLLLFVLVDGWSLTITS 249 Query: 241 LVKSF 245 LV+SF Sbjct: 250 LVQSF 254 >gi|269302615|gb|ACZ32715.1| type III secretion apparatus protein, YscR/HrcR family [Chlamydophila pneumoniae LPCoLN] Length = 306 Score = 168 bits (425), Expect = 7e-40, Method: Composition-based stats. Identities = 67/213 (31%), Positives = 122/213 (57%), Gaps = 11/213 (5%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 I L+++P L++++T + + II +LR +G+ PP+ V+ +AL ++ YVM PT Sbjct: 93 IILIFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTG 152 Query: 104 DRSIEMGIQPLMNNQITET-----------TAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152 + + + N I ++ A+ + EP F+ NT + + F ++ Sbjct: 153 VAMYKDARKEIEANTIPQSLFTAEGAETVFVALNKSKEPLRSFLIRNTPKAQIQSFYKIS 212 Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 + + ++ I+IP+F++ +++ +FEIG LI LPF +ID++ A +++AM MM Sbjct: 213 QKTFPSEIREHLTASDFVIIIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQMM 272 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ML P SISLP K++ V++DGW+LL++ L+ SF Sbjct: 273 MLSPLSISLPLKLLLIVMVDGWTLLLQGLMISF 305 >gi|238793338|ref|ZP_04636964.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia intermedia ATCC 29909] gi|238727307|gb|EEQ18835.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia intermedia ATCC 29909] Length = 216 Score = 168 bits (425), Expect = 8e-40, Method: Composition-based stats. Identities = 75/193 (38%), Positives = 118/193 (61%), Gaps = 2/193 (1%) Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRSIEMGIQPL 114 ++M T F + IVFS+LR +G+ VPPN+ I LAL +T ++M+P LD + +PL Sbjct: 24 MVMGTSFLKLSIVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVHARLQDEPL 83 Query: 115 MNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILI 173 N+ I A P+ F++ NT + ++ F D+ + IL+ Sbjct: 84 PNDIGALLQHIDEHALVPYRDFLQRNTDTEQVTFFNDIVQTKWPERYRNSVKPNSLLILM 143 Query: 174 PSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDG 233 P+F +++L +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK++ F+LIDG Sbjct: 144 PAFTLTQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMVSPITISLPFKLLIFILIDG 203 Query: 234 WSLLVENLVKSFI 246 W LL+ LV S++ Sbjct: 204 WGLLLGQLVGSYL 216 >gi|296125240|ref|YP_003632492.1| flagellar biosynthetic protein FliP [Brachyspira murdochii DSM 12563] gi|296017056|gb|ADG70293.1| flagellar biosynthetic protein FliP [Brachyspira murdochii DSM 12563] Length = 262 Score = 168 bits (425), Expect = 8e-40, Method: Composition-based stats. Identities = 85/246 (34%), Positives = 143/246 (58%), Gaps = 14/246 (5%) Query: 14 PELVFAKS-------SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66 P +A++ ++ + + ++ + TILS++P ++IM T F R Sbjct: 16 PAAAYAQNNTQIPIPTIGLNVTQAQTPQQVSLGLQILFLLTILSLSPSIIIMTTSFIRVS 75 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IV S ++ + + PP +I+ L+LF+TF++M PTL + +QP +N I Sbjct: 76 IVLSFVQRALSLQETPPRALIMGLSLFLTFFIMMPTLTQVNNEALQPYLNGSIGVNELYS 135 Query: 127 RVAEPFWVFMRNNTR----EKDLSLFMDMAHSSHRNTDITKNDH---IEYRILIPSFMIS 179 R +P +FM N+ R K L LF+ ++ ++ R DI D I +++P+F+I+ Sbjct: 136 RGIQPIRMFMFNSLRGENGMKSLDLFLSISDTNIRLRDIQTVDDLNRIPTIVVVPAFIIN 195 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL +F++G + +PF++ID++VA+I+MAMGM+MLPP ISLP K+I FV +DGW LL+ Sbjct: 196 ELTIAFKMGIYLFIPFIVIDLVVASILMAMGMIMLPPIMISLPLKIILFVAVDGWKLLIL 255 Query: 240 NLVKSF 245 +V+SF Sbjct: 256 QIVQSF 261 >gi|203284196|ref|YP_002221936.1| flagellar biosynthesis protein [Borrelia duttonii Ly] gi|203287735|ref|YP_002222750.1| flagellar biosynthesis protein [Borrelia recurrentis A1] gi|201083639|gb|ACH93230.1| flagellar biosynthesis protein [Borrelia duttonii Ly] gi|201084955|gb|ACH94529.1| flagellar biosynthesis protein [Borrelia recurrentis A1] Length = 254 Score = 168 bits (425), Expect = 8e-40, Method: Composition-based stats. Identities = 78/197 (39%), Positives = 119/197 (60%), Gaps = 7/197 (3%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P L+++T F R IV +R + + PPN VI+ LALF+T + M PT + + Sbjct: 62 PAFLVLMTSFLRIAIVLDFIRRALSLQQSPPNQVIMGLALFLTLFTMWPTFNIIYKDAYL 121 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRN---NTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169 PL +++I R P FM N+R +++ LFM ++ + + Sbjct: 122 PLRDSKINFNEFYDRGIAPLRNFMYKQMSNSRHEEIRLFMSISDYAKPK----NFSEVPT 177 Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229 +LI SF++ EL+ +F++G LI LPF+IID+IVA ++MAMGM+MLPP ISLPFK+I FV Sbjct: 178 HVLIASFILHELKVAFKMGILIFLPFIIIDIIVAAVLMAMGMIMLPPVIISLPFKLILFV 237 Query: 230 LIDGWSLLVENLVKSFI 246 ++DGW+L+ L+KSF+ Sbjct: 238 MVDGWTLITSGLIKSFM 254 >gi|15618734|ref|NP_225020.1| type III secretion system protein [Chlamydophila pneumoniae CWL029] gi|15836358|ref|NP_300882.1| type III secretion system protein [Chlamydophila pneumoniae J138] gi|16752215|ref|NP_445583.1| type III secretion system protein [Chlamydophila pneumoniae AR39] gi|33242185|ref|NP_877126.1| type III secretion system protein [Chlamydophila pneumoniae TW-183] gi|4377137|gb|AAD18962.1| Yop proteins translocation protein R [Chlamydophila pneumoniae CWL029] gi|6672012|dbj|BAA88643.1| Yop translocation R [Chlamydophila pneumoniae] gi|7189960|gb|AAF38821.1| type III secretion inner membrane protein SctR [Chlamydophila pneumoniae AR39] gi|8979199|dbj|BAA99033.1| Yop translocation R [Chlamydophila pneumoniae J138] gi|33236696|gb|AAP98783.1| YscR [Chlamydophila pneumoniae TW-183] Length = 306 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 67/213 (31%), Positives = 122/213 (57%), Gaps = 11/213 (5%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 I L+++P L++++T + + II +LR +G+ PP+ V+ +AL ++ YVM PT Sbjct: 93 IILIFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTG 152 Query: 104 DRSIEMGIQPLMNNQITET-----------TAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152 + + + N I ++ A+ + EP F+ NT + + F ++ Sbjct: 153 VAMYKDARKEIEANTIPQSLFTAEGAETVFVALNKSKEPLRSFLIRNTPKAQIQSFYKIS 212 Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 + + ++ I+IP+F++ +++ +FEIG LI LPF +ID++ A +++AM MM Sbjct: 213 QKTFPSEIRAHLTASDFVIIIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQMM 272 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ML P SISLP K++ V++DGW+LL++ L+ SF Sbjct: 273 MLSPLSISLPLKLLLIVMVDGWTLLLQGLMISF 305 >gi|48256988|gb|AAT41683.1| type three secretion apparatus protein R [Edwardsiella ictaluri] gi|84663102|gb|ABC60084.1| EsaR [Edwardsiella ictaluri 93-146] Length = 250 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 69/214 (32%), Positives = 121/214 (56%), Gaps = 1/214 (0%) Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92 +S++ + LS+ P+L++M T F + +VF++LR +G+ +PPNL + LAL Sbjct: 36 MSLTEQPAELIALLVTLSLLPLLIVMGTSFLKLSVVFALLRNALGIQQIPPNLALYGLAL 95 Query: 93 FMTFYVMSPTLDRS-IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 +T ++M+P + P + +P+ F+R +T K L F + Sbjct: 96 ILTLFIMTPVGTAVQARLADAPAQAQTTLLSRLSDNTLDPYRQFLRQHTSAKQLKFFRQV 155 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 A S + K +L+P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGM Sbjct: 156 ATKSWPASVREKISDNSLLLLMPAFAVSQLVEAFQIGLLLFLPFIAIDLIVSNILLAMGM 215 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MM+ P +IS+PFK++ F+L+ GW ++ L+ S+ Sbjct: 216 MMVSPMTISMPFKLLVFILVGGWDKILGQLLLSY 249 >gi|207724580|ref|YP_002254977.1| hrp protein hrcr [Ralstonia solanacearum MolK2] gi|207739216|ref|YP_002257609.1| hrp protein hrcr [Ralstonia solanacearum IPO1609] gi|206589802|emb|CAQ36763.1| hrp conserved protein hrcr [Ralstonia solanacearum MolK2] gi|206592589|emb|CAQ59495.1| hrp conserved protein hrcr [Ralstonia solanacearum IPO1609] Length = 217 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 57/208 (27%), Positives = 119/208 (57%), Gaps = 4/208 (1%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 + +++ P ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ ++M+P Sbjct: 9 LIVMAVAIALLPFAAMVVTSYTKIVVVLGLLRNALGVQQVPPNMVLNGIAMIVSCFIMAP 68 Query: 102 TLDRSIEMGIQPLMNN---QITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +++ L IT+ + +PF F+ +T ++ + FM A Sbjct: 69 VGMEAMQRAHVQLNAQGGANITQVMPLLDAARDPFREFLNKHTNAREKAFFMRSAQQLWP 128 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + +L P+F ++EL +F IGFL+ L F++ID+++A ++MA+G+ + P+ Sbjct: 129 PAKAALLKEDDLIVLAPAFTLTELTSAFRIGFLLYLAFIVIDLVIANLLMALGLSQVTPS 188 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++++PFK++ FV++DGWS+LV LV ++ Sbjct: 189 NVAIPFKLLLFVVMDGWSVLVHGLVNTY 216 >gi|238755993|ref|ZP_04617318.1| Surface presentation of antigens protein spaP [Yersinia ruckeri ATCC 29473] gi|238705782|gb|EEP98174.1| Surface presentation of antigens protein spaP [Yersinia ruckeri ATCC 29473] Length = 218 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 58/209 (27%), Positives = 118/209 (56%), Gaps = 2/209 (0%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V I + ++ P ++ TCF + IV ++R MG+ +P N+ + +AL ++ +VM Sbjct: 5 VPLIAIVALTTLLPFIIAAGTCFLKISIVLIMVRNAMGVQQIPSNIALNGIALLLSLFVM 64 Query: 100 SPTLDRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 P ++ + + M + + + + +++ + + LS F + Sbjct: 65 MPVINDINDYVREQKVEMTDVDSVNRFVDGGLGGYKSYLKKYSDPELLSFFESVQRGRSE 124 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + + + + L+P++ +SE++ +FEIGF I LPF++ID+++++I++A+GMMM+ P Sbjct: 125 HEIDVEKEEVTLFSLLPAYALSEIKSAFEIGFYIYLPFVVIDLVISSILLALGMMMMSPV 184 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +IS+P K+I FV +DGW+L+ + LV +I Sbjct: 185 TISVPIKLILFVAMDGWALISKGLVMQYI 213 >gi|172064928|ref|YP_001815640.1| Yop virulence translocation R [Burkholderia ambifaria MC40-6] gi|171997170|gb|ACB68087.1| Yop virulence translocation R [Burkholderia ambifaria MC40-6] Length = 218 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 118/208 (56%), Gaps = 4/208 (1%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 +S+ P + ++ T + + ++V +LR +G+ VPPN+V+ +A+ ++ YVM+P Sbjct: 10 LLITVVAISLIPFVAMVATSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAVLVSAYVMAP 69 Query: 102 TLDRSIEMGIQ----PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 ++++ P + + A EPF F++ + E++ F+ A Sbjct: 70 IGMQAMQTMQTMHRTPGSDTSLVVLDAFDAAKEPFRAFLKKHAHEREKRFFVRSATVVWP 129 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 K + +L P+F ++E+ +F+IGFL+ + F+++D+++A ++MAMG+ + PT Sbjct: 130 KDMAAKVREDDLIVLAPAFTLTEMADAFKIGFLLYIAFIVVDLVIANVLMAMGLNQVQPT 189 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++++PFK++ FV++ GWS L+ LV ++ Sbjct: 190 NVAIPFKLLLFVVMSGWSTLIHGLVMTY 217 >gi|171316782|ref|ZP_02905993.1| Yop virulence translocation R [Burkholderia ambifaria MEX-5] gi|171098040|gb|EDT42856.1| Yop virulence translocation R [Burkholderia ambifaria MEX-5] Length = 216 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 58/212 (27%), Positives = 117/212 (55%), Gaps = 2/212 (0%) Query: 36 STWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMT 95 + I ++S+ P + ++VT + + ++V +LR +G+ VPPN+VI +A+ ++ Sbjct: 4 AGDITGLLVAVVLISLVPFVAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVINGIAILVS 63 Query: 96 FYVMSPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 YVM+P ++ P N + EPF F+ + ++ F+ A Sbjct: 64 VYVMAPVGMSALRDIESKPPAGNASEAVIQILGNAREPFREFLAKHAATREKRFFLRSAS 123 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 + +L P+F +++L +F+IGFL+ + F+++D+++A +++AMG+ Sbjct: 124 IVWPKEAAAALQENDLIVLAPAFALTQLTDAFKIGFLLYIAFIVLDLVIANVLLAMGLNQ 183 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 + PT++++PFK++ FV++DGWS L+ L+ SF Sbjct: 184 VNPTNVAIPFKLLLFVVMDGWSTLIHGLIVSF 215 >gi|115360604|ref|YP_777741.1| type III secretion system protein [Burkholderia ambifaria AMMD] gi|170698360|ref|ZP_02889434.1| Yop virulence translocation R [Burkholderia ambifaria IOP40-10] gi|254253710|ref|ZP_04947027.1| Type III secretory pathway component EscR [Burkholderia dolosa AUO158] gi|115285932|gb|ABI91407.1| Yop virulence translocation R [Burkholderia ambifaria AMMD] gi|124898355|gb|EAY70198.1| Type III secretory pathway component EscR [Burkholderia dolosa AUO158] gi|170136699|gb|EDT04953.1| Yop virulence translocation R [Burkholderia ambifaria IOP40-10] Length = 218 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 118/208 (56%), Gaps = 4/208 (1%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 +S+ P + ++ T + + ++V +LR +G+ VPPN+V+ +A+ ++ YVM+P Sbjct: 10 LLITVVAISLIPFVAMVATSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAVLVSAYVMAP 69 Query: 102 TLDRSIEMGIQ----PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 ++++ P + + A EPF F++ + E++ F+ A Sbjct: 70 IGMQAMQTMQTMHRTPGSDTSLVVLDAFDAAKEPFRAFLKKHAHEREKRFFVRSATVVWP 129 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 K + +L P+F ++E+ +F+IGFL+ + F+++D+++A ++MAMG+ + PT Sbjct: 130 KDMAAKIREDDLIVLAPAFTLTEMADAFKIGFLLYIAFIVVDLVIANVLMAMGLNQVQPT 189 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++++PFK++ FV++ GWS L+ LV ++ Sbjct: 190 NVAIPFKLLLFVVMSGWSTLIHGLVMTY 217 >gi|325928699|ref|ZP_08189871.1| flagellar biosynthetic protein FliP [Xanthomonas perforans 91-118] gi|325540931|gb|EGD12501.1| flagellar biosynthetic protein FliP [Xanthomonas perforans 91-118] Length = 270 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 89/224 (39%), Positives = 132/224 (58%), Gaps = 4/224 (1%) Query: 22 SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81 SL +V + ++T + T +++ P +L+++T F R IV +LR +G G Sbjct: 48 SLPNVSVGRIGDQPVSLPLQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQT 107 Query: 82 PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141 P N V++ LA+F+T VM P + G+QP +NNQI +TA +P FM R Sbjct: 108 PSNQVLLGLAMFLTALVMMPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIR 167 Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201 E DL F MA D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++ Sbjct: 168 ETDLMTFAGMAGDGK----YAGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLV 223 Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 VA+++M+MGMMML P IS PFK++ F+L+DGW L+V L SF Sbjct: 224 VASVLMSMGMMMLSPMLISAPFKILLFILVDGWVLVVGTLAASF 267 >gi|197248361|ref|YP_002146623.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197212064|gb|ACH49461.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 215 Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 77/214 (35%), Positives = 126/214 (58%), Gaps = 1/214 (0%) Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92 +S+ ++ GI +LSI P++++M T F + +VFSILR +G+ VPPN+ + LAL Sbjct: 1 MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL 60 Query: 93 FMTFYVMSPTLDRSIEM-GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 ++ ++M PTL E + + + P+ F++ N+ EK+ + F ++ Sbjct: 61 VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL 120 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + K ILIP+F +S+L ++F IG LI LPFL ID++++ I++AMGM Sbjct: 121 IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM 180 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MM+ P +ISLPFK++ F+L GW L + LV+SF Sbjct: 181 MMVSPMTISLPFKLLIFLLAGGWDLTLAKLVQSF 214 >gi|270285645|ref|ZP_06195039.1| type III secretion system protein [Chlamydia muridarum Nigg] Length = 271 Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 67/213 (31%), Positives = 122/213 (57%), Gaps = 11/213 (5%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 I L+++P L++++T + + II +LR +G+ PP+ V+ +AL ++ YVM PT Sbjct: 58 VIILFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTG 117 Query: 104 DRSIEMGIQPLMNNQI-----------TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152 + + ++ + T A+ + EP F+ NNT + + F ++ Sbjct: 118 MAMYNDAKKGIESDAVPRDLFSAEGAETVFVALNKSKEPLRSFLINNTPKPQIQSFYKIS 177 Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 + + ++ ++IP+F++ +++ +FEIG LI LPF +ID++ A +++AM MM Sbjct: 178 QKTFPPELRQQLTPSDFVVVIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQMM 237 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ML P SISLP K++ V++DGW+LL+E L+ SF Sbjct: 238 MLSPLSISLPLKLLLVVMVDGWTLLLEGLMISF 270 >gi|317406210|gb|EFV86458.1| flagellar biosynthetic protein FliP [Achromobacter xylosoxidans C54] Length = 168 Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 79/170 (46%), Positives = 114/170 (67%), Gaps = 4/170 (2%) Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVF 135 MG PPN V+I LALF+TFY MSP D+ +PL I A++R A P F Sbjct: 1 MGTAMSPPNHVLIGLALFLTFYTMSPVFDKIYTDAYKPLSEGSIQFEAAVERAAGPLRTF 60 Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195 M + TRE DL+LF ++A + + RIL+P+F+ SEL+ +F+IGF I +PF Sbjct: 61 MLHQTRENDLALFANLAKQP----ALEDPSQVPLRILVPAFITSELKTAFQIGFTIFIPF 116 Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LIID++VA+++MA+GMMM+PP +++LPFK++ FVL DGW+LL+ +L +SF Sbjct: 117 LIIDLVVASVLMALGMMMVPPVTVALPFKLMLFVLADGWNLLMGSLAQSF 166 >gi|284006888|emb|CBA72157.1| type III secretion component protein SctR [Arsenophonus nasoniae] Length = 192 Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 68/190 (35%), Positives = 108/190 (56%), Gaps = 2/190 (1%) Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQP--LM 115 M T F + +VFS+LR +G+ +PPN+ I L++ +T YVM+P + + + + Sbjct: 1 MATSFVKMAMVFSLLRNALGVQQIPPNMAIYGLSIILTLYVMAPVALATKDFLNENPISL 60 Query: 116 NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPS 175 + + + +P+ F+ + ++ F + IL+P+ Sbjct: 61 SANASLEYFFEEGTKPYKSFLTKHINPREKEFFNENIAKYWPAKYANSVSSDSLFILLPA 120 Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235 F ISEL R+FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK++ FV+ DGWS Sbjct: 121 FTISELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISLPFKLLLFVMFDGWS 180 Query: 236 LLVENLVKSF 245 L LV S+ Sbjct: 181 RLSHGLVLSY 190 >gi|119714990|ref|YP_921955.1| flagellar biosynthesis protein FliP [Nocardioides sp. JS614] gi|119535651|gb|ABL80268.1| flagellar biosynthetic protein FliP [Nocardioides sp. JS614] Length = 266 Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 80/220 (36%), Positives = 134/220 (60%), Gaps = 4/220 (1%) Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85 +++ + V T++S+ P +L+ T F + +V + R +G+ PPN Sbjct: 49 TVDLGGLTDSPSTSVTVLIGLTLISLLPAILLSCTAFTKIFVVLGLTRNALGLQQTPPNQ 108 Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145 V+ LALF++ +VM P L E+G+QP +N T + AIQ EP FM +NT + +L Sbjct: 109 VLAGLALFLSLFVMGPVLSDINEVGLQPYLNGDKTTSVAIQDGIEPLRDFMLDNTDDDEL 168 Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205 L ++A + LIP+F+++EL+++F IGF+I +PFL+ID++V+ Sbjct: 169 MLLTNVAGRDLPEDRA----DVSTATLIPAFVLTELKQAFIIGFIIFIPFLVIDLVVSGA 224 Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MA+GMMM+PP +SLPFK++ FVL+DGW+L++++LV S+ Sbjct: 225 LMALGMMMMPPVMVSLPFKLLLFVLVDGWALVIKSLVASY 264 >gi|261884803|ref|ZP_06008842.1| flagellar biosynthesis protein FliP [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 190 Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 80/167 (47%), Positives = 108/167 (64%), Gaps = 4/167 (2%) Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 ++T F R IIVFS LR MG +PP V+ISLAL +TF++M P +S GI+P + Sbjct: 28 VMTSFLRLIIVFSFLRQAMGTQQMPPTNVLISLALILTFFIMEPVAKQSYNEGIKPYLEE 87 Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177 +I A A+PF FM NTREKDL+LF + + NT D I + I P+F+ Sbjct: 88 KIGYQDAFALGAKPFKEFMVRNTREKDLALFYRIRALPNPNT----VDDIPFTIAAPAFI 143 Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 ISEL+ +FEIGF++ LP L+IDM+V +++M+MGMM LPP ISL FK Sbjct: 144 ISELKTAFEIGFMLYLPVLVIDMVVNSVLMSMGMMTLPPEMISLTFK 190 >gi|300697461|ref|YP_003748122.1| Hypersensitivity response secretion protein hrcR, type III secretion system [Ralstonia solanacearum CFBP2957] gi|299074185|emb|CBJ53730.1| Hypersensitivity response secretion protein hrcR, type III secretion system [Ralstonia solanacearum CFBP2957] Length = 217 Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 117/208 (56%), Gaps = 4/208 (1%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 + +++ P ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ ++M+P Sbjct: 9 LIVMAVAIALLPFAAMVVTSYTKIVVVLGLLRNALGVQQVPPNMVLNGIAMIVSCFIMAP 68 Query: 102 TLDRSIEMGIQPLMNNQITETTA----IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +++ L T + +PF F+ +T ++ + FM A Sbjct: 69 VGMEAMQRAHVQLNAQGGATITQVMPLLDAARDPFREFLNKHTNAREKAFFMRSAQQLWP 128 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + +L P+F ++EL +F IGFL+ L F++ID+++A ++MA+G+ + P+ Sbjct: 129 PAKAALLKEDDLIVLAPAFTLTELTSAFRIGFLLYLAFIVIDLVIANLLMALGLSQVTPS 188 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++++PFK++ FV++DGWS+LV LV ++ Sbjct: 189 NVAIPFKLLLFVVMDGWSVLVHGLVNTY 216 >gi|16764769|ref|NP_460384.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56413610|ref|YP_150685.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62180010|ref|YP_216427.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161614164|ref|YP_001588129.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167551612|ref|ZP_02345366.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167995053|ref|ZP_02576143.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168233614|ref|ZP_02658672.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168239303|ref|ZP_02664361.1| type III secretion apparatus protein, YscR/HrcR family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168240932|ref|ZP_02665864.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263749|ref|ZP_02685722.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463171|ref|ZP_02697102.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194448961|ref|YP_002045422.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472648|ref|ZP_03078632.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736899|ref|YP_002114432.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197266014|ref|ZP_03166088.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197362534|ref|YP_002142171.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198242436|ref|YP_002215713.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200390900|ref|ZP_03217511.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204927846|ref|ZP_03219047.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|224584070|ref|YP_002637868.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238913178|ref|ZP_04657015.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|2494570|sp|P74890|YSCR_SALTY RecName: Full=Virulence protein yscR gi|1526985|emb|CAA68199.1| secretion system apparatus, SsaR [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16419940|gb|AAL20343.1| secretion system apparatus protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56127867|gb|AAV77373.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62127643|gb|AAX65346.1| Secretion system apparatus SsaR [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161363528|gb|ABX67296.1| hypothetical protein SPAB_01906 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194407265|gb|ACF67484.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194459012|gb|EDX47851.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712401|gb|ACF91622.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195634326|gb|EDX52678.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094011|emb|CAR59507.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197244269|gb|EDY26889.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197288009|gb|EDY27396.1| type III secretion apparatus protein, YscR/HrcR family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197936952|gb|ACH74285.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603345|gb|EDZ01891.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204323188|gb|EDZ08384.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205323559|gb|EDZ11398.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327197|gb|EDZ13961.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332323|gb|EDZ19087.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205339292|gb|EDZ26056.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205347547|gb|EDZ34178.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224468597|gb|ACN46427.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261246625|emb|CBG24435.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993308|gb|ACY88193.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157954|emb|CBW17449.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912404|dbj|BAJ36378.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224041|gb|EFX49104.1| Type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322615097|gb|EFY12020.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619938|gb|EFY16811.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622250|gb|EFY19095.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627772|gb|EFY24562.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632883|gb|EFY29627.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636626|gb|EFY33329.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641181|gb|EFY37823.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644884|gb|EFY41417.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650280|gb|EFY46694.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655853|gb|EFY52155.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660179|gb|EFY56418.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665255|gb|EFY61443.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669512|gb|EFY65660.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673438|gb|EFY69540.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677366|gb|EFY73430.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679971|gb|EFY76010.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687443|gb|EFY83415.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322714477|gb|EFZ06048.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323129691|gb|ADX17121.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323194104|gb|EFZ79303.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198585|gb|EFZ83686.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202911|gb|EFZ87946.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208631|gb|EFZ93569.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211167|gb|EFZ96014.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217608|gb|EGA02323.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323218957|gb|EGA03467.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323223787|gb|EGA08091.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229410|gb|EGA13533.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232633|gb|EGA16729.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240329|gb|EGA24373.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242682|gb|EGA26703.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323245893|gb|EGA29881.1| type III secretion system protein YscR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252457|gb|EGA36304.1| type III secretion system protein YscR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256476|gb|EGA40209.1| type III secretion system protein YscR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260039|gb|EGA43664.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323271479|gb|EGA54900.1| type III secretion system protein YscR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326623460|gb|EGE29805.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332988306|gb|AEF07289.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 215 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 77/214 (35%), Positives = 126/214 (58%), Gaps = 1/214 (0%) Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92 +S+ ++ GI +LSI P++++M T F + +VFSILR +G+ VPPN+ + LAL Sbjct: 1 MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL 60 Query: 93 FMTFYVMSPTLDRSIEM-GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 ++ ++M PTL E + + + P+ F++ N+ EK+ + F ++ Sbjct: 61 VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL 120 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + K ILIP+F +S+L ++F IG LI LPFL ID++++ I++AMGM Sbjct: 121 IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM 180 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MM+ P +ISLPFK++ F+L GW L + LV+SF Sbjct: 181 MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF 214 >gi|161503487|ref|YP_001570599.1| type III secretion system protein [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864834|gb|ABX21457.1| hypothetical protein SARI_01563 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 215 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 78/214 (36%), Positives = 127/214 (59%), Gaps = 1/214 (0%) Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92 +S+ ++ GI +LSI P++++M T F + +VFSILR +G+ VPPN+ + LAL Sbjct: 1 MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL 60 Query: 93 FMTFYVMSPTLDRSIEM-GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 ++ ++M PTL E + + + + P+ F++ N+ EK+ S F ++ Sbjct: 61 VLSLFIMGPTLLAVKERWHPVQVADAPFWMSEWDSKALAPYRQFLQKNSEEKEASYFRNL 120 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + K ILIP+F +S+L ++F IG LI LPFL ID++++ I++AMGM Sbjct: 121 IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM 180 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MM+ P +ISLPFK++ F+L GW L + LV+SF Sbjct: 181 MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF 214 >gi|15605291|ref|NP_220077.1| type III secretion system protein [Chlamydia trachomatis D/UW-3/CX] gi|76789299|ref|YP_328385.1| type III secretion system protein [Chlamydia trachomatis A/HAR-13] gi|166155652|ref|YP_001653907.1| type III secretion system protein [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|237802991|ref|YP_002888185.1| type III secretion system protein [Chlamydia trachomatis B/Jali20/OT] gi|237804913|ref|YP_002889067.1| type III secretion system protein [Chlamydia trachomatis B/TZ1A828/OT] gi|255311381|ref|ZP_05353951.1| type III secretion system protein [Chlamydia trachomatis 6276] gi|255317682|ref|ZP_05358928.1| type III secretion system protein [Chlamydia trachomatis 6276s] gi|3329003|gb|AAC68164.1| Yop proteins translocation protein R [Chlamydia trachomatis D/UW-3/CX] gi|76167829|gb|AAX50837.1| SctR [Chlamydia trachomatis A/HAR-13] gi|165931640|emb|CAP07216.1| type III secretion system, membrane protein [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|231273213|emb|CAX10126.1| type III secretion system, membrane protein [Chlamydia trachomatis B/TZ1A828/OT] gi|231274225|emb|CAX11019.1| type III secretion system, membrane protein [Chlamydia trachomatis B/Jali20/OT] gi|296436096|gb|ADH18270.1| type III secretion system protein [Chlamydia trachomatis G/9768] gi|296437024|gb|ADH19194.1| type III secretion system protein [Chlamydia trachomatis G/11222] gi|296437956|gb|ADH20117.1| type III secretion system protein [Chlamydia trachomatis G/11074] gi|297140457|gb|ADH97215.1| type III secretion system protein [Chlamydia trachomatis G/9301] Length = 306 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 67/213 (31%), Positives = 121/213 (56%), Gaps = 11/213 (5%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 I L+++P L++++T + + II +LR +G+ PP+ V+ +AL ++ YVM PT Sbjct: 93 VILLFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTG 152 Query: 104 DRSIEMGIQPLMNNQI-----------TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152 + + ++ + T A+ + EP F+ NT + + F ++ Sbjct: 153 VAMYNDAKKGIESSAVPRDLFSAEGAETVFVALNKSKEPLRSFLIKNTPKPQIQSFYKIS 212 Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 + + ++ I+IP+F++ +++ +FEIG LI LPF +ID++ A +++AM MM Sbjct: 213 QKTFPPELRQQLTPSDFMIIIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQMM 272 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ML P SISLP K++ V++DGW+LL+E L+ SF Sbjct: 273 MLSPLSISLPLKLLLVVMVDGWTLLLEGLMISF 305 >gi|332294877|ref|YP_004436800.1| flagellar biosynthetic protein FliP [Thermodesulfobium narugense DSM 14796] gi|332177980|gb|AEE13669.1| flagellar biosynthetic protein FliP [Thermodesulfobium narugense DSM 14796] Length = 248 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 95/244 (38%), Positives = 147/244 (60%), Gaps = 6/244 (2%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSIS--TWIVRTFGIFTILSIAPILLIMVTC 61 + FF L+ ++ ++ S + ++ I TIL+ AP+LL+M T Sbjct: 7 FIFFIALLIIFNFNNISNAAPNINIDLGAGSPNDIANSLKVLFILTILAFAPLLLLMTTS 66 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F R +IVF LR +G+ + P +II L+LF+T ++M+P + + + P QIT Sbjct: 67 FLRLVIVFGFLRNALGIQQIIPGQIIIGLSLFLTLFIMTPIIQKIEQDAYTPYQKGQITF 126 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 AI+R P FM +NTR+ DLSL ++++ + N + I ++I +F++SEL Sbjct: 127 QDAIERGYIPLRDFMLHNTRKSDLSLMIELSRTPRPN----SVNEIAPTVVISAFVLSEL 182 Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 + SF IG +I LPF+IID+ VA+I+M+MGMMM+PP ISLP K++ FVL DGWSLLV++L Sbjct: 183 KTSFIIGIVIYLPFVIIDLAVASILMSMGMMMIPPVMISLPLKILLFVLADGWSLLVKSL 242 Query: 242 VKSF 245 + SF Sbjct: 243 IASF 246 >gi|332159962|ref|YP_004296539.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664192|gb|ADZ40836.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862413|emb|CBX72572.1| virulence protein yscR [Yersinia enterocolitica W22703] Length = 216 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 77/193 (39%), Positives = 117/193 (60%), Gaps = 2/193 (1%) Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRSIEMGIQPL 114 ++M T F + IVFS+LR +G+ VPPN+ I LAL +T ++M+P LD + +PL Sbjct: 24 MVMGTSFLKLSIVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVHARLQDEPL 83 Query: 115 MNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILI 173 N+ I A EP+ F++ NT + F D+ + IL+ Sbjct: 84 PNDLGALLYHIDEHALEPYRDFLQRNTDAAQVHFFNDIVQTKWPVRYRDTIKPNSLLILM 143 Query: 174 PSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDG 233 P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK++ F+LIDG Sbjct: 144 PAFTLSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMVSPITISLPFKLLIFILIDG 203 Query: 234 WSLLVENLVKSFI 246 W LL+ LV S++ Sbjct: 204 WGLLLGQLVGSYL 216 >gi|318607487|emb|CBY28985.1| type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components) [Yersinia enterocolitica subsp. palearctica Y11] Length = 216 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 76/193 (39%), Positives = 116/193 (60%), Gaps = 2/193 (1%) Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRSIEMGIQPL 114 ++M T F + IV S+LR +G+ VPPN+ I LAL +T ++M+P LD + +PL Sbjct: 24 MVMGTSFLKLSIVLSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVHARLQDEPL 83 Query: 115 MNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILI 173 N+ I A EP+ F++ NT + F D+ + IL+ Sbjct: 84 PNDLGALLYHIDEHALEPYRDFLQRNTDAAQVHFFNDIVQTKWPVRYRDTIKPNSLLILM 143 Query: 174 PSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDG 233 P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK++ F+LIDG Sbjct: 144 PAFTLSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMVSPITISLPFKLLIFILIDG 203 Query: 234 WSLLVENLVKSFI 246 W LL+ LV S++ Sbjct: 204 WGLLLGQLVGSYL 216 >gi|255348943|ref|ZP_05380950.1| type III secretion system protein [Chlamydia trachomatis 70] gi|255503482|ref|ZP_05381872.1| type III secretion system protein [Chlamydia trachomatis 70s] gi|255507160|ref|ZP_05382799.1| type III secretion system protein [Chlamydia trachomatis D(s)2923] gi|289525607|emb|CBJ15085.1| type III secretion system, membrane protein [Chlamydia trachomatis Sweden2] gi|296435168|gb|ADH17346.1| type III secretion system protein [Chlamydia trachomatis E/150] gi|296438888|gb|ADH21041.1| type III secretion system protein [Chlamydia trachomatis E/11023] Length = 306 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 67/213 (31%), Positives = 121/213 (56%), Gaps = 11/213 (5%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 I L+++P L++++T + + II +LR +G+ PP+ V+ +AL ++ YVM PT Sbjct: 93 VILLFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTG 152 Query: 104 DRSIEMGIQPLMNNQI-----------TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152 + + ++ + T A+ + EP F+ NT + + F ++ Sbjct: 153 VAMYNDAKKGIESSAVPRDLFSAEGAETVFVALNKSKEPLRSFLIKNTPKPQIQSFYKIS 212 Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 + + ++ I+IP+F++ +++ +FEIG LI LPF +ID++ A +++AM MM Sbjct: 213 QKTFPPELRQQLTPSDFMIIIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQMM 272 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ML P SISLP K++ V++DGW+LL+E L+ SF Sbjct: 273 MLSPLSISLPLKLLLVVMVDGWTLLLEGLMISF 305 >gi|166154777|ref|YP_001654895.1| type III secretion system protein [Chlamydia trachomatis 434/Bu] gi|301336052|ref|ZP_07224296.1| type III secretion system protein [Chlamydia trachomatis L2tet1] gi|165930765|emb|CAP04262.1| type III secretion system, membrane protein [Chlamydia trachomatis 434/Bu] Length = 306 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 67/213 (31%), Positives = 121/213 (56%), Gaps = 11/213 (5%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 I L+++P L++++T + + II +LR +G+ PP+ V+ +AL ++ YVM PT Sbjct: 93 VILLFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTG 152 Query: 104 DRSIEMGIQPLMNNQI-----------TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152 + + ++ + T A+ + EP F+ NT + + F ++ Sbjct: 153 VAMYHDAKKGIESSAVPRDLFSAEGAETVFVALNKSKEPLRSFLIKNTPKPQIQSFYKIS 212 Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 + + ++ I+IP+F++ +++ +FEIG LI LPF +ID++ A +++AM MM Sbjct: 213 QKTFPPELRQQLTPSDFMIIIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQMM 272 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ML P SISLP K++ V++DGW+LL+E L+ SF Sbjct: 273 MLSPLSISLPLKLLLVVMVDGWTLLLEGLMISF 305 >gi|297748692|gb|ADI51238.1| type III secretion inner membrane protein SctR [Chlamydia trachomatis D-EC] gi|297749572|gb|ADI52250.1| type III secretion inner membrane protein SctR [Chlamydia trachomatis D-LC] Length = 309 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 67/213 (31%), Positives = 121/213 (56%), Gaps = 11/213 (5%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 I L+++P L++++T + + II +LR +G+ PP+ V+ +AL ++ YVM PT Sbjct: 96 VILLFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTG 155 Query: 104 DRSIEMGIQPLMNNQI-----------TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152 + + ++ + T A+ + EP F+ NT + + F ++ Sbjct: 156 VAMYNDAKKGIESSAVPRDLFSAEGAETVFVALNKSKEPLRSFLIKNTPKPQIQSFYKIS 215 Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 + + ++ I+IP+F++ +++ +FEIG LI LPF +ID++ A +++AM MM Sbjct: 216 QKTFPPELRQQLTPSDFMIIIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQMM 275 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 ML P SISLP K++ V++DGW+LL+E L+ SF Sbjct: 276 MLSPLSISLPLKLLLVVMVDGWTLLLEGLMISF 308 >gi|284007639|emb|CBA73298.1| type III secretion inner membrane protein YscR,SpaR,HrcR,EscR [Arsenophonus nasoniae] Length = 209 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 71/208 (34%), Positives = 118/208 (56%), Gaps = 2/208 (0%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + LSI P+ +M T F + IV S+LR +G+ +PPN+ I LAL +T + M Sbjct: 1 MQLIVVLFCLSIMPLFAVMGTSFLKISIVLSMLRNALGIQQIPPNMAIYGLALILTLFTM 60 Query: 100 SPT-LDRSIEMGIQPLMNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +P + QP+ N + I P+ F++ NT E+ + F + + Sbjct: 61 APVGFAIRDNIKAQPIDWNSVNSMEQIDSSVITPYRDFLKKNTSEEQIKFFTQIGYKIWP 120 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 T +++P+F +S+L +F+IGFLI LPF+ ID+IV+ +++AMGMMM+ P Sbjct: 121 KQYQTSLSPNSLLVMVPAFTMSQLIAAFKIGFLIYLPFVAIDLIVSNVLLAMGMMMVSPM 180 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 +I+LPFK++ F+L+ GW L+ L+ SF Sbjct: 181 TIALPFKLLIFILMGGWDKLIGQLMVSF 208 >gi|167572947|ref|ZP_02365821.1| type III secretion system protein [Burkholderia oklahomensis C6786] Length = 216 Score = 165 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 68/210 (32%), Positives = 119/210 (56%), Gaps = 2/210 (0%) Query: 38 WIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFY 97 ++ + LSI P+L+++ T F + +VF++LR +G +PPN+ + LAL +T + Sbjct: 6 QPLQLIAVLFALSILPLLVVLGTSFLKLSVVFALLRNALGTQQIPPNIALHGLALVLTMF 65 Query: 98 VMSPTLDRSIEM-GIQPLMNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHSS 155 VM+P + P+ + T +++ P+ F+ NT + F D+ H + Sbjct: 66 VMAPVGLAIQDNLAAHPVRIDDKDFTQQVEKTILAPYRAFLERNTAPDQVRFFADVGHRT 125 Query: 156 HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215 + +L+P+F +S+L +F+IG L+ LPF+ ID+IV+ +++AMGMMM+ Sbjct: 126 WPEPYRNRIPDDSLIVLLPAFTVSQLIEAFKIGLLLFLPFIAIDLIVSNVLLAMGMMMVS 185 Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 P +I+LP K++ FVLI GW L+ L+ SF Sbjct: 186 PMTIALPLKLLVFVLIHGWEKLIGQLLLSF 215 >gi|16760492|ref|NP_456109.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141748|ref|NP_805090.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213416630|ref|ZP_03349774.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213426016|ref|ZP_03358766.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213581367|ref|ZP_03363193.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213647287|ref|ZP_03377340.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213854184|ref|ZP_03382716.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289827206|ref|ZP_06545929.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25316659|pir||AI0696 probable type III secretion protein yscR [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502788|emb|CAD01946.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29137376|gb|AAO68939.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 215 Score = 165 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 76/214 (35%), Positives = 125/214 (58%), Gaps = 1/214 (0%) Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92 +S+ ++ GI +LSI P++++M T F + +VFSILR +G+ VPPN+ + AL Sbjct: 1 MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL 60 Query: 93 FMTFYVMSPTLDRSIEM-GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 ++ ++M PTL E + + + P+ F++ N+ EK+ + F ++ Sbjct: 61 VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL 120 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + K ILIP+F +S+L ++F IG LI LPFL ID++++ I++AMGM Sbjct: 121 IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM 180 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MM+ P +ISLPFK++ F+L GW L + LV+SF Sbjct: 181 MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF 214 >gi|294141001|ref|YP_003556979.1| type III secretion system EscR protein [Shewanella violacea DSS12] gi|293327470|dbj|BAJ02201.1| type III secretion system EscR protein [Shewanella violacea DSS12] Length = 216 Score = 165 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 72/215 (33%), Positives = 123/215 (57%), Gaps = 2/215 (0%) Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92 +S+ V+ + LSI P+ +M T F + IV S+LR +G+ +PPN+ I L+L Sbjct: 1 MSVLDNPVQLIILLFCLSILPLFAVMGTSFLKLSIVLSMLRNALGIQQIPPNMAIYGLSL 60 Query: 93 FMTFYVMSPTLDRSIEM-GIQPLMNNQITETTAIQRVAE-PFWVFMRNNTREKDLSLFMD 150 +T ++M+P + + P++ + + +A P+ F+ NT + L F + Sbjct: 61 ILTLFIMAPIGMEINDNLKVHPIVFDSANIIEQVNTLAIIPYRDFLEKNTSKTQLDFFAN 120 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 + H + + +++P+F +S+L +F+IG LI LPF+ ID+IV+ I++AMG Sbjct: 121 IGHKTWPDKYQDVLSKDSLFVMLPAFTMSQLIEAFKIGLLIYLPFVAIDLIVSNILLAMG 180 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMM+ P +ISLPFK++ F+L+ GW LV L+ SF Sbjct: 181 MMMVSPMTISLPFKLLIFILMGGWEKLVSQLMVSF 215 >gi|167568050|ref|ZP_02360966.1| type III secretion system protein [Burkholderia oklahomensis EO147] Length = 216 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 68/210 (32%), Positives = 119/210 (56%), Gaps = 2/210 (0%) Query: 38 WIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFY 97 ++ + LSI P+L+++ T F + +VF++LR +G +PPN+ + LAL +T + Sbjct: 6 QPLQLIAVLFALSILPLLVVLGTSFLKLSVVFALLRNALGTQQIPPNIALHGLALVLTMF 65 Query: 98 VMSPTLDRSIEM-GIQPLMNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHSS 155 VM+P + P+ + T +++ P+ F+ NT + F D+ H + Sbjct: 66 VMAPVGLAIQDNLAAHPVGIDDKDFTQQVEKTILAPYRAFLERNTAPDQVRFFADVGHRT 125 Query: 156 HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215 + +L+P+F +S+L +F+IG L+ LPF+ ID+IV+ +++AMGMMM+ Sbjct: 126 WPEPYRNRIPDDSLIVLLPAFTVSQLIEAFKIGLLLFLPFIAIDLIVSNVLLAMGMMMVS 185 Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 P +I+LP K++ FVLI GW L+ L+ SF Sbjct: 186 PMTIALPLKLLVFVLIHGWEKLIGQLLLSF 215 >gi|168822289|ref|ZP_02834289.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194445968|ref|YP_002040671.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|205352865|ref|YP_002226666.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857075|ref|YP_002243726.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|194404631|gb|ACF64853.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|205272646|emb|CAR37556.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205341300|gb|EDZ28064.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206708878|emb|CAR33208.1| putative type III secretion protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|309243393|gb|ADO51969.1| SsaR [Salmonella enterica subsp. enterica serovar Gallinarum] gi|320086102|emb|CBY95876.1| Virulence protein yscR [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|326627937|gb|EGE34280.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 215 Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats. Identities = 77/214 (35%), Positives = 125/214 (58%), Gaps = 1/214 (0%) Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92 +S+ ++ GI +LSI P++++M T F + +VFSILR +G+ VPPN+ + LAL Sbjct: 1 MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL 60 Query: 93 FMTFYVMSPTLDRSIEM-GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 ++ ++M PTL E + + + P+ F++ N+ EK+ + F + Sbjct: 61 VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRSL 120 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + K ILIP+F +S+L ++F IG LI LPFL ID++++ I++AMGM Sbjct: 121 IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM 180 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MM+ P +ISLPFK++ F+L GW L + LV+SF Sbjct: 181 MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF 214 >gi|218887527|ref|YP_002436848.1| type III secretion system protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758481|gb|ACL09380.1| Yop virulence translocation R [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 216 Score = 165 bits (417), Expect = 6e-39, Method: Composition-based stats. Identities = 69/214 (32%), Positives = 124/214 (57%), Gaps = 3/214 (1%) Query: 35 ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFM 94 T + +L +AP L+MVT + + ++V S++R +G+ VPP +V+ LA+ + Sbjct: 2 TGTMPLYYIAGMALLGLAPFFLMMVTSYVKIVVVTSLVRNALGVQQVPPAMVMNGLAIIL 61 Query: 95 TFYVMSPTLDRSIEMGIQPLMNNQITETTA---IQRVAEPFWVFMRNNTREKDLSLFMDM 151 + ++M+P ++ ++++ ++ Q + R + P F+ N +K ++ FM Sbjct: 62 SIFIMAPMVESTLDILKTVRVSEQPEPREVVELLDRASPPLRDFLSRNADDKVITAFMGT 121 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 A IL+P+F ISEL ++F+IGFL+ LPF+ ID+I++ I++AMGM Sbjct: 122 AKRIWPKERHDTIRRENLLILVPAFTISELTKAFQIGFLLYLPFVAIDLIISNILLAMGM 181 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MM+ P +ISLPFK++ FV +DGW + + L+ S+ Sbjct: 182 MMVSPMTISLPFKLLLFVTLDGWLKISQGLLLSY 215 >gi|167841181|ref|ZP_02467865.1| type III secretion system protein [Burkholderia thailandensis MSMB43] Length = 216 Score = 165 bits (417), Expect = 6e-39, Method: Composition-based stats. Identities = 69/215 (32%), Positives = 122/215 (56%), Gaps = 2/215 (0%) Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92 +S+ V+ + LSI P+L+++ + F + +VF++LR +G +PPN+ + LAL Sbjct: 1 MSVLDQPVQLIVVLFALSILPLLMVLGSSFLKLAVVFALLRNALGTQQIPPNIALYGLAL 60 Query: 93 FMTFYVMSPTLDRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 +T ++M+P + + ++++ + P+ F+ NT + F D Sbjct: 61 VLTLFIMAPVGLAIQDNLAEHPVQLDDKQFTQQVETTILAPYRDFLARNTARAQVRFFAD 120 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 + H + + +LIP+F IS+L +F+IG L+ LPF+ ID+IV+ +++AMG Sbjct: 121 IGHRTWPEPYRNRIPDDSLIVLIPAFAISQLIEAFKIGLLLFLPFVAIDLIVSNVLLAMG 180 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMM+ P +I+LP K++ FVLI+GW L+ LV SF Sbjct: 181 MMMVSPMTIALPLKLLVFVLINGWEKLLGQLVLSF 215 >gi|89069801|ref|ZP_01157136.1| flagellar biosynthetic protein FliP [Oceanicola granulosus HTCC2516] gi|89044602|gb|EAR50718.1| flagellar biosynthetic protein FliP [Oceanicola granulosus HTCC2516] Length = 246 Score = 165 bits (417), Expect = 6e-39, Method: Composition-based stats. Identities = 86/220 (39%), Positives = 136/220 (61%), Gaps = 4/220 (1%) Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85 +++ D S++T ++ + T+LS+ P L IM+TCFP + V +ILR +G+ PPN+ Sbjct: 30 TLSLGEDGSLATRSIQLLLLVTLLSLVPGLAIMITCFPFIVTVLAILRQAIGLQQSPPNM 89 Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145 +I++LALF+T++VM P + E G PL + + A PF FM L Sbjct: 90 LIVTLALFLTYFVMEPVFRAAWEAGGAPLAAGEASLEEAFAGAIAPFRTFMAARVDPSAL 149 Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205 + D+ S+ +L+PSF++SE+ R+F++GFL+ LPFLIID++VA + Sbjct: 150 ASLADLRGSAPPPAPEAAP----LSVLVPSFLLSEIERAFQVGFLLFLPFLIIDLVVAAV 205 Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +M+MGMMM+PP +SLPFK+ FFV+ DGW+L+ E LV+ + Sbjct: 206 LMSMGMMMVPPAIVSLPFKLAFFVVADGWTLVAEALVRGY 245 >gi|304414276|ref|ZP_07395644.1| type III secretion system protein [Candidatus Regiella insecticola LSR1] gi|304283490|gb|EFL91886.1| type III secretion system protein [Candidatus Regiella insecticola LSR1] Length = 216 Score = 165 bits (417), Expect = 7e-39, Method: Composition-based stats. Identities = 64/192 (33%), Positives = 109/192 (56%), Gaps = 2/192 (1%) Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115 ++M T F + +VFS+LR +G+ VPPN+ I AL +T ++M+P + + Sbjct: 24 MVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGFALVLTLFIMAPVGFDVYDRLQGEAL 83 Query: 116 NNQIT--ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILI 173 + I ++ P+ F+ NT + + F ++ K I++ Sbjct: 84 PDDIGAFMQHIDEKALVPYRAFLVRNTSVEQTNFFAEIIKKDWPEKYRDKIKPDSLLIMM 143 Query: 174 PSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDG 233 P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK++ F+++ G Sbjct: 144 PAFTVSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMVSPMTISLPFKLLIFIMVGG 203 Query: 234 WSLLVENLVKSF 245 W LL+ LV S+ Sbjct: 204 WHLLLGQLVGSY 215 >gi|323143897|ref|ZP_08078559.1| type III secretion apparatus protein, YscR/HrcR family [Succinatimonas hippei YIT 12066] gi|322416324|gb|EFY06996.1| type III secretion apparatus protein, YscR/HrcR family [Succinatimonas hippei YIT 12066] Length = 222 Score = 164 bits (416), Expect = 8e-39, Method: Composition-based stats. Identities = 68/213 (31%), Positives = 123/213 (57%), Gaps = 4/213 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + + + ++ + P L + T + + I+V ++R +G+ VPP +V+ LA+ ++ Sbjct: 8 SNPINLIFLIALMGLVPFFLTLATSYIKIIVVIYLIRNALGIQQVPPGMVLSGLAMILSI 67 Query: 97 YVMSPTLDRSIEMGIQPLMNNQITETTAI----QRVAEPFWVFMRNNTREKDLSLFMDMA 152 +VM+P ++ ++ Q ++ T + V+ P F+++NT E+ L+ F + A Sbjct: 68 FVMAPVGVKTYDLLQQQDVSTVETSPYNVLEIADNVSGPLKDFLQHNTDERILNAFTNTA 127 Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 +IPSF+ISEL ++F+IGFL+ LPF+ ID+I++ I++AMGMM Sbjct: 128 QRIWPQEIHNVISKDSLIFIIPSFVISELTKAFQIGFLLYLPFIAIDLIISNILLAMGMM 187 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+ P +ISLPFK++ FV +DGW L + L+ S+ Sbjct: 188 MVSPMTISLPFKLMLFVTLDGWLKLSQGLLYSY 220 >gi|317486826|ref|ZP_07945642.1| YscR/HrcR family type III secretion apparatus protein [Bilophila wadsworthia 3_1_6] gi|316921989|gb|EFV43259.1| YscR/HrcR family type III secretion apparatus protein [Bilophila wadsworthia 3_1_6] Length = 216 Score = 164 bits (416), Expect = 8e-39, Method: Composition-based stats. Identities = 67/203 (33%), Positives = 125/203 (61%), Gaps = 3/203 (1%) Query: 46 FTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDR 105 +L +AP L+MVT + + ++V S++R +G+ VPP +V+ LA+ ++ ++M+P + Sbjct: 13 MALLGLAPFFLMMVTSYVKIVVVTSLVRNALGVQQVPPAMVMNGLAIILSLFIMAPMMMS 72 Query: 106 SIEMGIQPLMNNQITETTAI---QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT 162 ++++ + ++ + + I +++ P F+ +NT + L FM A Sbjct: 73 TMDIAGKLQISAEPSPKEVIGIVDKLSPPLRKFLSDNTEDGVLRAFMSTAKRIWPKEQHD 132 Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222 + IL+P+F ISEL ++F++GFL+ LPF+ ID+I++ I++AMGMMM+ P +ISLP Sbjct: 133 QISKDNMLILVPAFTISELTKAFQVGFLLYLPFIAIDLIISNILLAMGMMMVSPMTISLP 192 Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245 FK++ FV +DGW + + L+ S+ Sbjct: 193 FKLLLFVTLDGWLKISQGLLLSY 215 >gi|33593240|ref|NP_880884.1| type III secretion system protein [Bordetella pertussis Tohama I] gi|29603234|emb|CAC79579.1| bscR [Bordetella pertussis Tohama I] gi|33563615|emb|CAE42516.1| putative type III secretion protein [Bordetella pertussis Tohama I] gi|332382649|gb|AEE67496.1| type III secretion system protein [Bordetella pertussis CS] Length = 223 Score = 164 bits (416), Expect = 9e-39, Method: Composition-based stats. Identities = 67/204 (32%), Positives = 112/204 (54%), Gaps = 10/204 (4%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 P++++M T F + +V +++R +G+ VPPN+ + LAL ++ YVM+P + R Sbjct: 19 VPLIVVMTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHRIGTEVQ 78 Query: 112 QPLMNNQITETTA----------IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161 + T A +R P FM N++ F+ A Sbjct: 79 ALTAQAGESGTAAPMALDAVLGVAERGVGPLRAFMLRNSQPAQRDFFLRTARHLWGEEAS 138 Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221 +L P+F++SEL +F++GFL+ LPF+IID+IV+ I++AMGMMM+ P +IS+ Sbjct: 139 RDLSEDNLLVLTPAFLVSELTAAFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVTISM 198 Query: 222 PFKVIFFVLIDGWSLLVENLVKSF 245 P K+ FV++DGW+ L++ LV S+ Sbjct: 199 PLKLFLFVMVDGWTRLIQGLVLSY 222 >gi|16520044|ref|NP_444164.1| type III secretion system protein [Sinorhizobium fredii NGR234] gi|2494571|sp|P55720|Y4YL_RHISN RecName: Full=Probable translocation protein y4yL gi|2182737|gb|AAB91951.1| innermembrane protein RhcR; component of type III secretion apparatus [Sinorhizobium fredii NGR234] Length = 222 Score = 164 bits (416), Expect = 9e-39, Method: Composition-based stats. Identities = 69/192 (35%), Positives = 113/192 (58%), Gaps = 2/192 (1%) Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115 ++ T F + +V ++R +G ++PPN+V+ + AL +T +V +P +++ + P + Sbjct: 25 VVTTTAFVKVSVVLFLVRNALGTQTIPPNIVLYAAALILTMFVSAPVAEQTYDRITDPRL 84 Query: 116 NNQ--ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILI 173 Q A + ++P ++ T E+ F+ ++ IL+ Sbjct: 85 RYQSLDDWAEAAKAGSQPLLEHLKKFTNEEQRRFFLSSTEKVWPEEMRAGVTADDFAILV 144 Query: 174 PSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDG 233 PSF+ISEL+R+FEIGFL+ LPF++ID+IV TI+MAMGM M+ PT I++PFK+ FV IDG Sbjct: 145 PSFLISELKRAFEIGFLLYLPFIVIDLIVTTILMAMGMSMVSPTIIAVPFKLFLFVAIDG 204 Query: 234 WSLLVENLVKSF 245 WS L+ LV S+ Sbjct: 205 WSRLMHGLVLSY 216 >gi|268592375|ref|ZP_06126596.1| type III secretion apparatus protein, YscR/HrcR family [Providencia rettgeri DSM 1131] gi|291312161|gb|EFE52614.1| type III secretion apparatus protein, YscR/HrcR family [Providencia rettgeri DSM 1131] Length = 232 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 58/209 (27%), Positives = 113/209 (54%), Gaps = 2/209 (0%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + I ++ P ++ TC+ + IV ++R MG+ VP +V+ +AL ++ +VM Sbjct: 19 IPLLAIIAFSTLLPFVIAAGTCYLKISIVLIMVRNAMGVQQVPSTMVLNGIALLLSIFVM 78 Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 P L Q ++ N + ++ + +++ + + ++ F + Sbjct: 79 MPVLQDVNNHMRQEQVDFSNVESIDNFVENGLGGYKSYLKKYSDPQLVTFFESIQQGRSE 138 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 L+P++ +SE++ +FEIGF I LPF+++D+++++I++A+GMMM+ P Sbjct: 139 EEITADEGKATLFSLLPAYALSEIKSAFEIGFYIYLPFVVVDLVISSILLALGMMMMSPV 198 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +IS+P K+I FV IDGWSL+ + LV +I Sbjct: 199 TISIPVKLILFVAIDGWSLISKGLVMQYI 227 >gi|33596843|ref|NP_884486.1| type III secretion system protein [Bordetella parapertussis 12822] gi|33600617|ref|NP_888177.1| type III secretion system protein [Bordetella bronchiseptica RB50] gi|6708104|gb|AAF25801.1|AF172245_3 BscR [Bordetella bronchiseptica] gi|33568216|emb|CAE32129.1| putative type III secretion protein [Bordetella bronchiseptica RB50] gi|33573544|emb|CAE37535.1| putative type III secretion protein [Bordetella parapertussis] Length = 223 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 67/204 (32%), Positives = 113/204 (55%), Gaps = 10/204 (4%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111 P++++M T F + +V +++R +G+ VPPN+ + LAL ++ YVM+P + R Sbjct: 19 VPLIVVMTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHRIGTEVQ 78 Query: 112 QPLMNNQITETTA----------IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161 + T A ++R P FM N++ F+ A Sbjct: 79 ALTAQAGESGTAAPMALDAVLGVVERGVAPLRAFMLRNSQPAQRDFFLRTARHLWGEEAS 138 Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221 +L P+F++SEL +F++GFL+ LPF+IID+IV+ I++AMGMMM+ P +IS+ Sbjct: 139 RDLSEDNLLVLTPAFLVSELTAAFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVTISM 198 Query: 222 PFKVIFFVLIDGWSLLVENLVKSF 245 P K+ FV++DGW+ L++ LV S+ Sbjct: 199 PLKLFLFVMVDGWTRLIQGLVLSY 222 >gi|170738279|ref|YP_001779539.1| Yop virulence translocation R [Burkholderia cenocepacia MC0-3] gi|169820467|gb|ACA95049.1| Yop virulence translocation R [Burkholderia cenocepacia MC0-3] Length = 216 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 117/206 (56%), Gaps = 2/206 (0%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 + + P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ +T YVM+P Sbjct: 10 LLIAVIAIGLIPFVAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVTLYVMAP 69 Query: 102 TLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 + + + N E A PF F++ ++RE++ FM AH + Sbjct: 70 IGMSAADTMRHEQLANSPAEIMVQAFGASQAPFRTFLKAHSRERERLFFMRSAHVIWPES 129 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + +L P+F ++EL +F+IGFL+ + F+I+D ++A +++AMG+ + PT++ Sbjct: 130 LANALHEDDLIVLAPAFTLTELADAFKIGFLLYIAFIIVDFVIANVLLAMGLNQIQPTNV 189 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 ++PFK++ FV +DGWS L+ L+ ++ Sbjct: 190 AIPFKLLLFVAMDGWSALIHGLILTY 215 >gi|307947532|ref|ZP_07662865.1| type III secretion apparatus protein, YscR/HrcR family [Roseibium sp. TrichSKD4] gi|307769350|gb|EFO28578.1| type III secretion apparatus protein, YscR/HrcR family [Roseibium sp. TrichSKD4] Length = 217 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 69/206 (33%), Positives = 121/206 (58%), Gaps = 2/206 (0%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 + ++ PI+ + VT F + +V I+R G+ ++PPN+V+ LA+ ++ Y+ P Sbjct: 11 VIALVFFMAFLPIIAVTVTAFAKIAVVLMIVRNATGLQNLPPNVVMYGLAIILSAYIAFP 70 Query: 102 TLDRSIEMGIQ--PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 + S E Q P + A Q + P F++ + EK + F+ + Sbjct: 71 VVADSFERVQQTVPELETAQDWIKAGQEGSAPLKEFLKKHADEKQTAFFLASTRKIWGDK 130 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + IL+PSF++SEL ++FEIGFL+ LPF+ ID+IV T+++A+GMMM+PP++I Sbjct: 131 YAQDATPEDLAILVPSFLLSELTKAFEIGFLLFLPFIAIDIIVTTVLIALGMMMVPPSTI 190 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 S+PFK++ FV ++GWS +V+ L+ ++ Sbjct: 191 SIPFKLMLFVFVEGWSKIVQGLLLTY 216 >gi|19749328|gb|AAL98698.1| Y4yL [Sinorhizobium fredii] gi|52631921|gb|AAU85371.1| RhcR [Sinorhizobium fredii] Length = 222 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 69/192 (35%), Positives = 114/192 (59%), Gaps = 2/192 (1%) Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115 ++ T F + +V ++R +G ++PPN+V+ + AL +T +V +P +++ + P + Sbjct: 25 VVTTTAFVKVSVVLFLVRNALGTQTIPPNIVLYAAALILTMFVSAPIAEQTYDRITDPRL 84 Query: 116 NNQ--ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILI 173 Q A + ++P ++ T E+ F+ + ++ IL+ Sbjct: 85 RYQSLDDWAEAAKAGSQPLLEHLKKFTNEEQRRFFLSSTEKVWPEEMRARVTADDFAILV 144 Query: 174 PSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDG 233 PSF+ISEL+R+FEIGFL+ LPF++ID+IV TI+MAMGM M+ PT I++PFK+ FV IDG Sbjct: 145 PSFLISELKRAFEIGFLLYLPFIVIDLIVTTILMAMGMSMVSPTIIAVPFKLFLFVAIDG 204 Query: 234 WSLLVENLVKSF 245 WS L+ LV S+ Sbjct: 205 WSRLMHGLVLSY 216 >gi|312884595|ref|ZP_07744299.1| type III secretion system protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309367907|gb|EFP95455.1| type III secretion system protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 216 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 68/208 (32%), Positives = 119/208 (57%), Gaps = 2/208 (0%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + LS+ P+ +M T F + IV S+LR +G+ +PPN+ I LAL +T + M Sbjct: 8 IQLIVVLFCLSLLPLFAVMGTSFLKLSIVLSMLRNALGIQQIPPNMAIYGLALILTMFTM 67 Query: 100 SPTLDRS-IEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +P + P+ I ++V P++ F+ +NT +K + F + H Sbjct: 68 APVGMAIRDNLAAHPVEWASPDVFHQISEQVIAPYYKFLSHNTSDKQIQFFSQIGHKIWP 127 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + +++P+F +S+L +F+IGFL+ LPF+ ID++V+ I++AMGMMM+ P Sbjct: 128 EQYQHELSKESLLVMVPAFTMSQLIEAFKIGFLLYLPFVAIDLVVSNILLAMGMMMVSPM 187 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 +I+LPFK++ F+L+ GW L+ L+ SF Sbjct: 188 TIALPFKLLIFILMGGWDKLIGQLMGSF 215 >gi|227820525|ref|YP_002824496.1| type III secretion system protein [Sinorhizobium fredii NGR234] gi|227339524|gb|ACP23743.1| translocation protein in type III secretion RhcR [Sinorhizobium fredii NGR234] Length = 217 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 71/215 (33%), Positives = 116/215 (53%), Gaps = 2/215 (0%) Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92 +T ++ I + + + P+ ++ +T F + IV ++R +G+ PPNLV+ +AL Sbjct: 2 GETTTNLIPIIIIVSTIGLIPLAVVTMTGFLKISIVLFLIRNALGIQQSPPNLVLYGVAL 61 Query: 93 FMTFYVMSPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 +T YV +P + Q M + + A ++ P + T E + F+ Sbjct: 62 ILTVYVTTPLVGEMYRTLSSEQVDMQSMDSMVRAANQLRAPLQAHLTRYTDENERQFFLQ 121 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 IL+P+F+ SEL R+FEIGFL+ LPFL+ID+IV+T++MAMG Sbjct: 122 ATERIWSEEARASVKTDSLLILVPAFVSSELTRAFEIGFLLYLPFLVIDLIVSTVLMAMG 181 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMM+ PT IS+P K+ FV ++GWS L+ L+ S+ Sbjct: 182 MMMVSPTLISIPLKIFLFVAVNGWSRLMHGLILSY 216 >gi|313634413|gb|EFS01000.1| flagellar biosynthesis protein FliP [Listeria seeligeri FSL N1-067] Length = 255 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 69/241 (28%), Positives = 130/241 (53%), Gaps = 6/241 (2%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63 + F +F V A+S L + D S+ V F + TILS++ +++M T F Sbjct: 18 FVFSLIFFWPGTSVHAESWLDSLGVNGTDGVNSS--VALFVLVTILSLSASIVLMFTHFT 75 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 IIV + R G+G ++PPN V++ LALF++ ++M P + + +P + + + Sbjct: 76 YCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQTEEWSASK 135 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 ++ NT + D+++ + + +TK + L+P+F+++++ + Sbjct: 136 VWDETKPLLTKYVAENTYKHDINMML----KAEGEEPVTKKEDAPLMALMPAFILTQITQ 191 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 F G I L F+ ID+IV+T++M +GMMM+PP +ISLPFK++ F+ I G+ L+ + + Sbjct: 192 GFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVFIFIGGYGLITNMIFQ 251 Query: 244 S 244 + Sbjct: 252 T 252 >gi|317407761|gb|EFV87688.1| type III secretion protein [Achromobacter xylosoxidans C54] Length = 230 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 119/223 (53%), Gaps = 17/223 (7%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + +++++ P+ ++M T F + +V ++R +G+ PPN+ + LA+ ++ YVM Sbjct: 7 ITLALALSMVALVPLAVVMTTSFLKISVVLVLVRNALGIQQAPPNMALYGLAVILSAYVM 66 Query: 100 SPTLDRSIEM----GIQPLMNNQITETTAIQ-------------RVAEPFWVFMRNNTRE 142 +P + P + T Q R AEP FM N+R Sbjct: 67 APVGYQISAELRAVASAPATESGAPGTQGAQAGSSLENFLDVAARAAEPMRGFMLKNSRA 126 Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202 + F+ A + +L+P+F++SEL +F++GFL+ LPF++ID+IV Sbjct: 127 EQRDFFVRTARQLWGPEQAAALRETDLIVLVPAFLLSELTVAFQVGFLLYLPFVVIDLIV 186 Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 + I+MAMGMMM+ P +IS+P K+ FV++DGWS L++ LV S+ Sbjct: 187 SNILMAMGMMMVSPVTISMPLKLFLFVMVDGWSRLIQGLVLSY 229 >gi|191166033|ref|ZP_03027869.1| type III secretion apparatus protein EpaP [Escherichia coli B7A] gi|190903981|gb|EDV63694.1| type III secretion apparatus protein EpaP [Escherichia coli B7A] Length = 221 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 60/213 (28%), Positives = 122/213 (57%), Gaps = 4/213 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + + I ++ ++ P ++ TCF +F IVF I+R +G+ VP N+ + +AL ++ Sbjct: 2 SNSISLIAILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61 Query: 97 YVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-- 152 +VM P + NN + ++ + ++ ++ + +S F + Sbjct: 62 FVMMPVGKEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKHSEPELVSFFEKIQKV 121 Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 +SS N +I +D+I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM Sbjct: 122 NSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+ P +IS P K+I FV +DGW++L + L+ + Sbjct: 182 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214 >gi|315301906|ref|ZP_07872919.1| flagellar biosynthesis protein FliP [Listeria ivanovii FSL F6-596] gi|313629722|gb|EFR97842.1| flagellar biosynthesis protein FliP [Listeria ivanovii FSL F6-596] Length = 255 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 68/241 (28%), Positives = 130/241 (53%), Gaps = 6/241 (2%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63 + F +F V A+S L + D S+ V F + T+LS++ +++M T F Sbjct: 18 FVFSLIFFWPGTSVHAESWLDSLGVNGTDGVNSS--VALFVLVTVLSLSASIVLMFTHFT 75 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 IIV + R G+G ++PPN V++ LALF++ ++M P + + +P + + + Sbjct: 76 YCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQTEEWSASK 135 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 ++ NT + D+++ + + +TK + L+P+F+++++ + Sbjct: 136 VWDETKPLLTKYVAENTYKHDINMML----KAEGEKPVTKKEDAPLMALMPAFILTQITQ 191 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 F G I L F+ ID+IV+T++M +GMMM+PP +ISLPFK++ F+ I G+ L+ + + Sbjct: 192 GFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVFIFIGGYGLITNMIFQ 251 Query: 244 S 244 + Sbjct: 252 T 252 >gi|289433954|ref|YP_003463826.1| flagellar biosynthesis protein FliP [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170198|emb|CBH26738.1| flagellar biosynthesis protein FliP [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313639091|gb|EFS04067.1| flagellar biosynthesis protein FliP [Listeria seeligeri FSL S4-171] Length = 255 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 69/241 (28%), Positives = 130/241 (53%), Gaps = 6/241 (2%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63 + F +F V A+S L + D S+ V F + TILS++ +++M T F Sbjct: 18 FVFSLIFFWPGTSVHAESWLDSLGVNGTDGVNSS--VALFVLVTILSLSASIVLMFTHFT 75 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 IIV + R G+G ++PPN V++ LALF++ ++M P + + +P + + + Sbjct: 76 YCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQTEEWSASK 135 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 ++ NT + D+++ + + +TK + L+P+F+++++ + Sbjct: 136 VWDETKPLLTKYVAENTYKHDINMML----KAEGEKPVTKKEDAPLMALMPAFILTQITQ 191 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 F G I L F+ ID+IV+T++M +GMMM+PP +ISLPFK++ F+ I G+ L+ + + Sbjct: 192 GFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVFIFIGGYGLITNMIFQ 251 Query: 244 S 244 + Sbjct: 252 T 252 >gi|13475305|ref|NP_106869.1| type III secretion system protein [Mesorhizobium loti MAFF303099] gi|14026056|dbj|BAB52655.1| translocation protein in type III secretion system; HrcR [Mesorhizobium loti MAFF303099] Length = 221 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 72/209 (34%), Positives = 123/209 (58%), Gaps = 2/209 (0%) Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98 I+ + L + ++++ T F + +V ++R +G ++PPN+ + ++AL +T ++ Sbjct: 8 ILALLAVTAGLGLLVLVVVTTTAFVKVSVVLFLVRNALGTQTIPPNIALYAVALILTMFL 67 Query: 99 MSPTLDRSIEMGIQPLMNNQI--TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 +P ++++ + P ++ Q +A + +EP ++ T E+ F+ Sbjct: 68 SAPVVEQTYDRMTDPKLHYQTFDDWVSAAKSGSEPLRDHLKKFTNEEQRQFFLSSTEKVW 127 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 K + IL+PSF+ISEL+R+FEIGFL+ LPF++ID+IV TI+MAMGM M+ P Sbjct: 128 PAEMRAKATVDDLSILVPSFLISELKRAFEIGFLLYLPFIVIDLIVTTILMAMGMSMVSP 187 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 T IS+PFK+ FV IDGWS L+ LV S+ Sbjct: 188 TLISVPFKLFVFVAIDGWSKLMHGLVLSY 216 >gi|293416351|ref|ZP_06658990.1| YscR/HrcR family type III secretion apparatus protein [Escherichia coli B185] gi|291431707|gb|EFF04690.1| YscR/HrcR family type III secretion apparatus protein [Escherichia coli B185] Length = 220 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 54/211 (25%), Positives = 119/211 (56%), Gaps = 4/211 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + + ++ P ++ TCF +F +VF ++R +G+ VP N+V+ +AL ++ +VM Sbjct: 5 ISLIALLAFSTLLPFIIASGTCFVKFSVVFIMMRNALGLQQVPSNMVLNGVALMLSAFVM 64 Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS--S 155 P ++++ +N + + + ++ + ++ + ++ ++ F D H S Sbjct: 65 YPVTQQALDYYQNNSVNFRDADSVSDFVEHGLGRYREYLSRYSDKELVAFFEDAQHQRVS 124 Query: 156 HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215 + + L+P++ +SE++ +F I F + LPF+++D++++++++A+GMMM+ Sbjct: 125 REEALAAEGEQTSILSLLPAYALSEIKSAFRICFYLYLPFVVVDLVISSVLLALGMMMMS 184 Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 P +IS P K+I FV +DGW+LL LV ++ Sbjct: 185 PVTISTPVKLILFVAMDGWTLLSRGLVMQYM 215 >gi|171322880|ref|ZP_02911585.1| Yop virulence translocation R [Burkholderia ambifaria MEX-5] gi|171091754|gb|EDT37284.1| Yop virulence translocation R [Burkholderia ambifaria MEX-5] Length = 216 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 121/206 (58%), Gaps = 2/206 (0%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 ++S+ P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ Y+M+P Sbjct: 10 LLIAVLVMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAP 69 Query: 102 TLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 + + ++ Q T+ A EPF F+ ++RE++ F+ A Sbjct: 70 IGFAAQQQLQGQTLSPQPTQAMLQAFGAAKEPFRQFLAAHSREREKRFFLRSASVIWPKA 129 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + +L P+F ++++ +F IGF++ + F+I+D+++A ++M+MGM + PT++ Sbjct: 130 AAAQLREDDLIVLAPAFTLAQMTDAFRIGFILYIAFIIVDLVIANVLMSMGMNQVQPTNV 189 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 ++PFK++ FV++DGWS LV LV ++ Sbjct: 190 AIPFKLMLFVVMDGWSTLVHGLVLTY 215 >gi|304311653|ref|YP_003811251.1| Type III secretory pathway protein [gamma proteobacterium HdN1] gi|301797386|emb|CBL45606.1| Type III secretory pathway protein [gamma proteobacterium HdN1] Length = 221 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 67/201 (33%), Positives = 116/201 (57%), Gaps = 6/201 (2%) Query: 51 IAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMG 110 +AP + +MVT F + ++V S+LR +G+ PPN+V+ LA+ ++ YVM P L ++ + Sbjct: 20 MAPFVAVMVTAFTKLVVVLSLLRNSLGLQQTPPNVVLNGLAIILSLYVMYPVLLQTQSLI 79 Query: 111 IQPLMNN------QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164 L +P F+ +++E + F++ A D Sbjct: 80 TSHLKETPEAKLTVDRLIEIFDVGKKPLKDFLIRHSKESERHFFLESARQLLPEEDRNNI 139 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 ++ +++P+F +SEL +F+IGFL+ LPFLIID++V+ ++MA+G+ ML PT +SLPFK Sbjct: 140 HEDDFLVIVPAFTVSELSAAFQIGFLLFLPFLIIDLLVSNLLMALGIAMLSPTQVSLPFK 199 Query: 225 VIFFVLIDGWSLLVENLVKSF 245 ++ FV I GW+ L+ LV ++ Sbjct: 200 LLLFVFISGWTQLIHGLVLTY 220 >gi|254517017|ref|ZP_05129075.1| flagellar biosynthetic protein FliP [gamma proteobacterium NOR5-3] gi|219674522|gb|EED30890.1| flagellar biosynthetic protein FliP [gamma proteobacterium NOR5-3] Length = 247 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 94/233 (40%), Positives = 141/233 (60%), Gaps = 6/233 (2%) Query: 15 ELVFAKSSLHDVMNIPADLSIS--TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72 E A++ + V P+ S + ++ + T+L++ P LI +T F R +IV +IL Sbjct: 17 ETALAQTGIPLVSVQPSAAGGSDYSMSIQILLLMTLLTLIPAALITMTSFTRILIVLAIL 76 Query: 73 RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132 R +G P N +I+ L+LF++ ++M+P + + +QP MN + T A+ PF Sbjct: 77 RQALGTAQTPSNQIILGLSLFLSLFIMAPVFEVAWSTALQPYMNETVGFTEALDAAKIPF 136 Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192 FM TRE DL LF ++ NT D + +L+PSF+ SEL+ +F+IGFL+ Sbjct: 137 REFMFGQTRETDLLLFAELGGYGAFNT----PDDVPMVVLLPSFLTSELKTAFQIGFLMF 192 Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +PFLIID++VA ++M+MGMMML P ISLPFK++ FVLIDGWSL+ LV SF Sbjct: 193 VPFLIIDLVVAAVLMSMGMMMLSPMLISLPFKLMLFVLIDGWSLVAATLVTSF 245 >gi|76574805|gb|ABA47279.1| HrcR [Pseudomonas cichorii] Length = 209 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 118/207 (57%), Gaps = 2/207 (0%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 LS+ P+L+I+ T F + +V I R +G+ PPN+ + +AL T ++M+P Sbjct: 3 LALFLGALSLVPLLMIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAP 62 Query: 102 TLDRSIEMGIQ--PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 + + + ++N +A + V EP +FM N + ++ Sbjct: 63 VFNEMGQRVKKLPERLDNFAAMESAGKHVIEPLRLFMTRNIDPDIQTHLLENTQRMWPKE 122 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 ++ + +++P+F++SEL+ F+IGFLI +PF++ID+IV+ I++A+GM M+ P +I Sbjct: 123 MSSQASRDDLLLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTI 182 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246 SLP K++ FVL+DGW+ L++ L S++ Sbjct: 183 SLPLKILLFVLVDGWTRLLDGLFYSYM 209 >gi|116872065|ref|YP_848846.1| flagellar biosynthesis protein FliP [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740943|emb|CAK20063.1| flagellar biosynthesis protein FliP [Listeria welshimeri serovar 6b str. SLCC5334] Length = 255 Score = 162 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 69/241 (28%), Positives = 129/241 (53%), Gaps = 6/241 (2%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63 + +F V A+S L + D S+ V F + T+LS++ +++M T F Sbjct: 18 FAISLIFFWPGVNVHAESWLDSLGVNGTDGVNSS--VALFVLVTVLSLSASIVLMFTHFT 75 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 IIV + R G+G ++PPN V++ LALF++ ++M P + + +P + T + Sbjct: 76 YCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQKEEWTASK 135 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 ++ NT + D+++ + + ITK + L+P+F+++++ + Sbjct: 136 VWDETKPLLTKYVAENTYKHDINMML----KAEGEDPITKKEDAPLMALMPAFILTQITQ 191 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 F G I L F+ ID+IV+T++M +GMMM+PP +ISLPFK++ F+ I G+ L+ + + Sbjct: 192 GFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVFIFIGGYGLITNMIFQ 251 Query: 244 S 244 + Sbjct: 252 T 252 >gi|259908638|ref|YP_002648994.1| surface presentation of antigens protein SpaP [Erwinia pyrifoliae Ep1/96] gi|224964260|emb|CAX55767.1| type III secretion apparatus [Erwinia pyrifoliae Ep1/96] Length = 223 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 59/212 (27%), Positives = 115/212 (54%), Gaps = 6/212 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + G+ + ++ P L+ TCF +F IV ++R +G+ VP NL + +AL ++ +VM Sbjct: 6 ISLIGVLSFFTLLPFLIAGGTCFIKFSIVLVMMRNALGIQQVPSNLTLNGIALILSAFVM 65 Query: 100 SPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 P R + N + + ++ + + + F + + Sbjct: 66 MPVCQRIADDVESRHIDFNQSGAIPQLMDDGLGSYREYLVHYSDHDLIHFFNKVQKKRND 125 Query: 158 NTDITKNDH----IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 + ++ +H + L+P++ +SE++ +F+I F I +PF++IDM+V++I++A+GMMM Sbjct: 126 DNEVDITEHELRRLPLMTLMPAYALSEIQSAFKIAFYIYIPFVVIDMVVSSILLALGMMM 185 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 + P +IS+P K+I FV +DGWSLL + L+ + Sbjct: 186 MSPVTISIPIKLILFVAMDGWSLLAKGLITQY 217 >gi|254992443|ref|ZP_05274633.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL J2-064] Length = 258 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 122/225 (54%), Gaps = 7/225 (3%) Query: 7 FALFLVTPEL-VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65 +L + P + V A+S L + D S+ V F + T+LS++ +++M T F Sbjct: 20 ISLVVFWPGVNVHAESWLDSLGVNGTDGVNSS--VALFVLVTVLSLSASIVLMFTHFTYC 77 Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 IIV + R G+G ++PPN V++ LALF++ ++M P + + +P + + + Sbjct: 78 IIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQKEEWSASKVW 137 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185 ++ NT + D+++ + + +TK + L+P+F+++++ + F Sbjct: 138 DETKPLLTKYVAENTYKHDINMML----KAEGEDPVTKKEDAPLMALMPAFILTQITQGF 193 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230 G I L F+ ID+IV+T++M +GMMM+PP +ISLPFK++ F Sbjct: 194 LTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVFYF 238 >gi|331674342|ref|ZP_08375102.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli TA280] gi|331068436|gb|EGI39831.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli TA280] Length = 221 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 59/213 (27%), Positives = 121/213 (56%), Gaps = 4/213 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + + I ++ ++ P ++ TCF +F IVF I+R +G+ VP N+ + +AL ++ Sbjct: 2 SNSISLIAILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61 Query: 97 YVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-- 152 +VM P + NN + ++ + ++ + + +S F + Sbjct: 62 FVMMPVGKEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQKG 121 Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 +SS N +I +++I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM Sbjct: 122 NSSEDNEEIIDDENISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+ P +IS P K+I FV +DGW++L + L+ + Sbjct: 182 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214 >gi|46906927|ref|YP_013316.1| flagellar biosynthesis protein FliP [Listeria monocytogenes serotype 4b str. F2365] gi|47091639|ref|ZP_00229435.1| flagellar biosynthesis protein FliP [Listeria monocytogenes str. 4b H7858] gi|226223307|ref|YP_002757414.1| flagellar biosynthesic protein FliP [Listeria monocytogenes Clip81459] gi|254824044|ref|ZP_05229045.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL J1-194] gi|254853119|ref|ZP_05242467.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL R2-503] gi|254932044|ref|ZP_05265403.1| flagellar biosynthesis protein FliP [Listeria monocytogenes HPB2262] gi|255521627|ref|ZP_05388864.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL J1-175] gi|300764487|ref|ZP_07074480.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL N1-017] gi|46880193|gb|AAT03493.1| flagellar biosynthesis protein FliP [Listeria monocytogenes serotype 4b str. F2365] gi|47019958|gb|EAL10695.1| flagellar biosynthesis protein FliP [Listeria monocytogenes str. 4b H7858] gi|225875769|emb|CAS04472.1| Putative flagellar biosynthesic protein FliP [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606470|gb|EEW19078.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL R2-503] gi|293583597|gb|EFF95629.1| flagellar biosynthesis protein FliP [Listeria monocytogenes HPB2262] gi|293593273|gb|EFG01034.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL J1-194] gi|300514841|gb|EFK41895.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL N1-017] gi|328467245|gb|EGF38325.1| flagellar biosynthesis protein FliP [Listeria monocytogenes 1816] gi|328475641|gb|EGF46390.1| flagellar biosynthesis protein FliP [Listeria monocytogenes 220] gi|332311101|gb|EGJ24196.1| Flagellar biosynthesis protein FliP [Listeria monocytogenes str. Scott A] Length = 255 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 68/239 (28%), Positives = 131/239 (54%), Gaps = 7/239 (2%) Query: 7 FALFLVTPEL-VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65 +L + P + V A+S L + D S+ V F + T+LS++ +++M T F Sbjct: 20 ISLVVFWPGVNVHAESWLDSLGVNGTDGVNSS--VALFVLVTVLSLSASIVLMFTHFTYC 77 Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 IIV + R G+G ++PPN V++ LALF++ ++M P + + +P + + + Sbjct: 78 IIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQKEEWSASKVW 137 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185 ++ NT + D+++ + + +TK + L+P+F+++++ + F Sbjct: 138 DETKPLLTKYVAENTYKHDINMML----KAEGEDPVTKKEDAPLMALMPAFILTQITQGF 193 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 G I L F+ ID+IV+T++M +GMMM+PP +ISLPFK++ F+ I G+ L+ + ++ Sbjct: 194 LTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVFIFIGGYGLITNMIFQT 252 >gi|313624918|gb|EFR94826.1| flagellar biosynthesis protein FliP [Listeria innocua FSL J1-023] Length = 255 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 67/241 (27%), Positives = 129/241 (53%), Gaps = 6/241 (2%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63 + +F V A+S L + D S+ V F + T+LS++ +++M T F Sbjct: 18 FAISLVFFWPGVNVHAESWLDSLGVNGTDGVNSS--VALFVLVTVLSLSASIVLMFTHFT 75 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 IIV + R G+G ++PPN V++ LALF++ ++M P + + +P + + + Sbjct: 76 YCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQKEEWSASK 135 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 ++ NT + D+++ + + +TK + L+P+F+++++ + Sbjct: 136 VWDETQPLLTKYVAENTYKHDINMML----KAEGEEPVTKKEDAPLMALMPAFILTQITQ 191 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 F G I L F+ ID+IV+T++M +GMMM+PP +ISLPFK++ F+ I G+ L+ + + Sbjct: 192 GFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVFIFIGGYGLITNMIFQ 251 Query: 244 S 244 + Sbjct: 252 T 252 >gi|213029393|ref|ZP_03343840.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 203 Score = 162 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 74/202 (36%), Positives = 119/202 (58%), Gaps = 1/202 (0%) Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 I +LSI P++++M T F + +VFSILR +G+ VPPN+ + AL ++ ++M PTL Sbjct: 1 ILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLL 60 Query: 105 RSIEM-GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163 E + + + P+ F++ N+ EK+ + F ++ + K Sbjct: 61 AVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRK 120 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 ILIP+F +S+L ++F IG LI LPFL ID++++ I++AMGMMM+ P +ISLPF Sbjct: 121 IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF 180 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K++ F+L GW L + LV+SF Sbjct: 181 KLLIFLLAGGWDLTLAQLVQSF 202 >gi|238757865|ref|ZP_04619047.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia aldovae ATCC 35236] gi|238703850|gb|EEP96385.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia aldovae ATCC 35236] Length = 215 Score = 162 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 71/208 (34%), Positives = 126/208 (60%), Gaps = 3/208 (1%) Query: 41 RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100 + + +LS+ P+ ++M T F + +VFSILR +G+ VPPN+ + LAL ++ ++M+ Sbjct: 9 QLIALLFVLSLLPLAVVMGTSFLKLAVVFSILRNALGIQQVPPNMALYGLALVLSMFIMA 68 Query: 101 PTLDRSIEMGIQPLMNNQ--ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 PT+ +++ P+ + + + P+ F++ N+ EK+ F ++ + Sbjct: 69 PTVL-AVKAQWHPVADASTPVWMSGWDGHALGPYRQFLQKNSDEKEARYFRNLIAKTWPE 127 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 + IL+P+F +S+L ++F IG LI LPFL ID++V+ I++AMGMMM+ P + Sbjct: 128 DARRRVKPDSLLILLPAFTVSQLTQAFRIGLLIYLPFLAIDLLVSNILLAMGMMMVSPMT 187 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSFI 246 ISLPFK++ F+L GW L++ LV+SF+ Sbjct: 188 ISLPFKLLIFLLAGGWDLILSQLVQSFV 215 >gi|16799759|ref|NP_470027.1| flagellar biosynthesis protein FliP [Listeria innocua Clip11262] gi|16413136|emb|CAC95916.1| lin0684 [Listeria innocua Clip11262] gi|313620096|gb|EFR91601.1| flagellar biosynthesis protein FliP [Listeria innocua FSL S4-378] Length = 255 Score = 162 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 67/241 (27%), Positives = 129/241 (53%), Gaps = 6/241 (2%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63 + +F V A+S L + D S+ V F + T+LS++ +++M T F Sbjct: 18 FAISLVFFWPGVNVHAESWLDSLGVNGTDGVNSS--VALFVLVTVLSLSASIVLMFTHFT 75 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 IIV + R G+G ++PPN V++ LALF++ ++M P + + +P + + + Sbjct: 76 YCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQKEEWSASK 135 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 ++ NT + D+++ + + +TK + L+P+F+++++ + Sbjct: 136 VWDETQPLLTKYVAENTYKHDINMML----KAEGEDPVTKKEDAPLMALMPAFILTQITQ 191 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 F G I L F+ ID+IV+T++M +GMMM+PP +ISLPFK++ F+ I G+ L+ + + Sbjct: 192 GFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVFIFIGGYGLITNMIFQ 251 Query: 244 S 244 + Sbjct: 252 T 252 >gi|224825752|ref|ZP_03698856.1| flagellar biosynthetic protein FliP [Lutiella nitroferrum 2002] gi|224601976|gb|EEG08155.1| flagellar biosynthetic protein FliP [Lutiella nitroferrum 2002] Length = 252 Score = 162 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 75/221 (33%), Positives = 127/221 (57%), Gaps = 7/221 (3%) Query: 24 HDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPP 83 + P D ++ T + I T+L + P+L++M+T F RF+IV S+LR +G+ P Sbjct: 35 ANAGGTPVDFTVKT---QILIIMTLLGLLPVLMLMMTSFTRFVIVLSLLRQALGLQQGLP 91 Query: 84 NLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREK 143 N ++ +AL +T VM P + P ++IT A+ +P FM T + Sbjct: 92 NRLVTGVALILTLLVMRPVGLEVWNKAMLPFDQDKITMQQALDVAQQPISRFMLAQTSKA 151 Query: 144 DLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVA 203 L+ ++ ++ + + + + +F++SEL+ +F+IG ++ +PFL+ID++V+ Sbjct: 152 ALAQVAKLSG----EENVARPQDHAFAVKLAAFVLSELKTAFQIGCMLFIPFLVIDLVVS 207 Query: 204 TIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 +++MAMGMMML P ISLP K++ FVL+DGWSL V LV S Sbjct: 208 SVLMAMGMMMLSPLVISLPLKLLMFVLVDGWSLTVNTLVTS 248 >gi|284922803|emb|CBG35891.1| type III secretion system protein [Escherichia coli 042] Length = 221 Score = 162 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 59/213 (27%), Positives = 121/213 (56%), Gaps = 4/213 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + + I ++ ++ P ++ TCF +F IVF I+R +G+ VP N+ + +AL ++ Sbjct: 2 SNSISLIAILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGIALLLSM 61 Query: 97 YVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-- 152 +VM P + NN + ++ + ++ + + +S F + Sbjct: 62 FVMMPVGKEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQKV 121 Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 +SS N +I +++I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM Sbjct: 122 NSSEDNEEIIDDENISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+ P +IS P K+I FV +DGW++L + L+ + Sbjct: 182 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214 >gi|310767462|gb|ADP12412.1| surface presentation of antigens protein SpaP [Erwinia sp. Ejp617] Length = 223 Score = 162 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 58/212 (27%), Positives = 115/212 (54%), Gaps = 6/212 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + + + ++ P L+ TCF +F IV ++R +G+ VP NL + +AL ++ +VM Sbjct: 6 ISLIAVLSFFTLLPFLIAGGTCFIKFSIVLVMMRNALGIQQVPSNLTLNGIALILSAFVM 65 Query: 100 SPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 P R + N + + ++ + + + F ++ + Sbjct: 66 MPVCQRIADDVESRHIDFNQSGAIPQLMDDGLGSYREYLVHYSDHDLIHFFNNVQKKRND 125 Query: 158 NTDITKNDH----IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 + ++ +H + L+P++ +SE++ +F+I F I +PF++IDM+V++I++A+GMMM Sbjct: 126 DNEVDITEHELRRLPLMTLMPAYALSEIQSAFKIAFYIYIPFVVIDMVVSSILLALGMMM 185 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 + P +IS+P K+I FV +DGWSLL + L+ + Sbjct: 186 MSPVTISIPIKLILFVAMDGWSLLAKGLITQY 217 >gi|188026435|ref|ZP_02962073.2| hypothetical protein PROSTU_04166 [Providencia stuartii ATCC 25827] gi|188019857|gb|EDU57897.1| hypothetical protein PROSTU_04166 [Providencia stuartii ATCC 25827] Length = 227 Score = 162 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 55/217 (25%), Positives = 117/217 (53%), Gaps = 2/217 (0%) Query: 32 DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91 ++SI + + + ++ ++ P ++ TC+ + IV ++R MG+ VP + + +A Sbjct: 6 NMSIVSNEIPMLALVSLATLLPFIIAAGTCYLKISIVLIMVRNAMGVQQVPSTMALNGIA 65 Query: 92 LFMTFYVMSPTLDRS--IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 + ++ +VM P + + N + + + +++ + + + F Sbjct: 66 MLLSLFVMMPVVQDISHYMREEKVDFGNVESVDNFVDGGLGRYKAYLQKYSDPELVQFFE 125 Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 + + + L+P++ +SE++ +FEIGF I LPF++ID+++++I++A+ Sbjct: 126 SVQQQRNEEPMDAEAHSATLFSLLPAYALSEVKSAFEIGFYIYLPFVVIDLVISSILLAL 185 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 GMMM+ P +IS+P K+I FV IDGWSL+ + LV ++ Sbjct: 186 GMMMMSPVTISVPVKLILFVAIDGWSLISKGLVMQYL 222 >gi|193063605|ref|ZP_03044694.1| type III secretion apparatus protein EpaP [Escherichia coli E22] gi|193071824|ref|ZP_03052713.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli E110019] gi|194426470|ref|ZP_03059025.1| fliP family protein [Escherichia coli B171] gi|209920317|ref|YP_002294401.1| surface presentation of antigens protein SpaP [Escherichia coli SE11] gi|218555411|ref|YP_002388324.1| surface presentation of antigens protein SpaP [Escherichia coli IAI1] gi|218706362|ref|YP_002413881.1| surface presentation of antigens protein SpaP [Escherichia coli UMN026] gi|260845525|ref|YP_003223303.1| type III secretion protein EpaP [Escherichia coli O103:H2 str. 12009] gi|260856977|ref|YP_003230868.1| type III secretion protein EpaP [Escherichia coli O26:H11 str. 11368] gi|260869540|ref|YP_003235942.1| type III secretion protein EpaP [Escherichia coli O111:H- str. 11128] gi|293406354|ref|ZP_06650280.1| surface presentation antigens protein SpaP [Escherichia coli FVEC1412] gi|293412212|ref|ZP_06654935.1| YscR/HrcR family type III secretion apparatus protein [Escherichia coli B354] gi|293449185|ref|ZP_06663606.1| YscR/HrcR family type III secretion apparatus protein [Escherichia coli B088] gi|298382089|ref|ZP_06991686.1| spaP protein [Escherichia coli FVEC1302] gi|300815709|ref|ZP_07095933.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 107-1] gi|300820661|ref|ZP_07100812.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 119-7] gi|300898067|ref|ZP_07116435.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 198-1] gi|307310520|ref|ZP_07590168.1| Yop virulence translocation R [Escherichia coli W] gi|309793922|ref|ZP_07688347.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 145-7] gi|331664426|ref|ZP_08365332.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli TA143] gi|331678847|ref|ZP_08379521.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli H591] gi|14422435|dbj|BAB60842.1| epaP [Escherichia coli] gi|62085063|gb|AAX62928.1| putative type III secretion apparatus integral membrane protein component [Escherichia coli] gi|192930882|gb|EDV83487.1| type III secretion apparatus protein EpaP [Escherichia coli E22] gi|192954864|gb|EDV85378.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli E110019] gi|194415778|gb|EDX32045.1| fliP family protein [Escherichia coli B171] gi|209913576|dbj|BAG78650.1| putative type III secretion protein [Escherichia coli SE11] gi|218362179|emb|CAQ99796.1| putative type III secretion system protein EpaP [Escherichia coli IAI1] gi|218433459|emb|CAR14361.1| putative type III secretion system protein EpaP [Escherichia coli UMN026] gi|257755626|dbj|BAI27128.1| type III secretion protein EpaP [Escherichia coli O26:H11 str. 11368] gi|257760672|dbj|BAI32169.1| type III secretion protein EpaP [Escherichia coli O103:H2 str. 12009] gi|257765896|dbj|BAI37391.1| type III secretion protein EpaP [Escherichia coli O111:H- str. 11128] gi|291322275|gb|EFE61704.1| YscR/HrcR family type III secretion apparatus protein [Escherichia coli B088] gi|291426360|gb|EFE99392.1| surface presentation antigens protein SpaP [Escherichia coli FVEC1412] gi|291468983|gb|EFF11474.1| YscR/HrcR family type III secretion apparatus protein [Escherichia coli B354] gi|298277229|gb|EFI18745.1| spaP protein [Escherichia coli FVEC1302] gi|300358205|gb|EFJ74075.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 198-1] gi|300526925|gb|EFK47994.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 119-7] gi|300531638|gb|EFK52700.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 107-1] gi|306909415|gb|EFN39910.1| Yop virulence translocation R [Escherichia coli W] gi|308122329|gb|EFO59591.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 145-7] gi|315062167|gb|ADT76494.1| type III secretion system protein [Escherichia coli W] gi|323153851|gb|EFZ40087.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli EPECa14] gi|323180305|gb|EFZ65857.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli 1180] gi|323377249|gb|ADX49517.1| Yop virulence translocation R [Escherichia coli KO11] gi|331058357|gb|EGI30338.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli TA143] gi|331073677|gb|EGI44998.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli H591] Length = 221 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 60/213 (28%), Positives = 121/213 (56%), Gaps = 4/213 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + + I ++ ++ P ++ TCF +F IVF I+R +G+ VP N+ + +AL ++ Sbjct: 2 SNSISLIAILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61 Query: 97 YVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-- 152 +VM P + NN + ++ + ++ + + +S F + Sbjct: 62 FVMMPVGKEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQKV 121 Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 +SS N +I +D+I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM Sbjct: 122 NSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+ P +IS P K+I FV +DGW++L + L+ + Sbjct: 182 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214 >gi|34498079|ref|NP_902294.1| surface presentation of antigens protein SpaP [Chromobacterium violaceum ATCC 12472] gi|34103934|gb|AAQ60294.1| surface presentation of antigens; secretory proteins [Chromobacterium violaceum ATCC 12472] Length = 220 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 53/216 (24%), Positives = 116/216 (53%), Gaps = 13/216 (6%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + + ++ P L+ TCF +F IVF ++R +G+ VP N+ + +AL ++ +VM Sbjct: 5 ISLIALLAFSTLLPFLIASGTCFVKFSIVFVMVRNALGLQQVPSNMTLNGIALMLSMFVM 64 Query: 100 SPTLDRSIEMGIQPLMNNQITETTA------IQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 P ++ +++ T+ ++ + + +++ + + F Sbjct: 65 LPVAQQAYGY----YQEERVSFTSVEAVNNFVENGLDGYRGYLQKYSDPELTRFFEKAQS 120 Query: 154 SSHRN---TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 +D L+P++ +SE++ +F+IGF + LPF+++D++++++++A+G Sbjct: 121 QRSERDGGEAAAPDDKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVISSVLLALG 180 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 MMM+ P +IS+P K++ FV +DGW+LL + LV ++ Sbjct: 181 MMMMSPVTISVPIKLVLFVALDGWTLLSKGLVLQYL 216 >gi|313610171|gb|EFR85472.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL F2-208] Length = 252 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 67/241 (27%), Positives = 129/241 (53%), Gaps = 6/241 (2%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63 + +F V A+S L + D S+ V F + T+LS++ +++M T F Sbjct: 18 FAISLVFFWPGVNVHAESWLDSLGVNGTDGVNSS--VALFVLVTVLSLSASIVLMFTHFT 75 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 IIV + R G+G ++PPN V++ LALF++ ++M P + + +P + + + Sbjct: 76 YCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQKEEWSASK 135 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 ++ NT + D+++ + + +TK + L+P+F+++++ + Sbjct: 136 VWDETQPLLTKYVAENTYKHDINMML----KAEGEDPVTKKEDAPLMALMPAFILTQITQ 191 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 F G I L F+ ID+IV+T++M +GMMM+PP +ISLPFK++ F+ I G+ L+ + + Sbjct: 192 GFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVFIFIGGYGLITNMIFQ 251 Query: 244 S 244 + Sbjct: 252 T 252 >gi|47095241|ref|ZP_00232852.1| flagellar biosynthesis protein FliP [Listeria monocytogenes str. 1/2a F6854] gi|224498759|ref|ZP_03667108.1| flagellar biosynthesis protein FliP [Listeria monocytogenes Finland 1988] gi|254829333|ref|ZP_05234020.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL N3-165] gi|254900088|ref|ZP_05260012.1| flagellar biosynthesis protein FliP [Listeria monocytogenes J0161] gi|254911359|ref|ZP_05261371.1| flagellar biosynthesis protein FliP [Listeria monocytogenes J2818] gi|254935686|ref|ZP_05267383.1| flagellar biosynthesis protein FliP [Listeria monocytogenes F6900] gi|284801006|ref|YP_003412871.1| flagellar biosynthesis protein FliP [Listeria monocytogenes 08-5578] gi|284994148|ref|YP_003415916.1| flagellar biosynthesis protein FliP [Listeria monocytogenes 08-5923] gi|47016312|gb|EAL07234.1| flagellar biosynthesis protein FliP [Listeria monocytogenes str. 1/2a F6854] gi|258601745|gb|EEW15070.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL N3-165] gi|258608268|gb|EEW20876.1| flagellar biosynthesis protein FliP [Listeria monocytogenes F6900] gi|284056568|gb|ADB67509.1| flagellar biosynthesis protein FliP [Listeria monocytogenes 08-5578] gi|284059615|gb|ADB70554.1| flagellar biosynthesis protein FliP [Listeria monocytogenes 08-5923] gi|293589295|gb|EFF97629.1| flagellar biosynthesis protein FliP [Listeria monocytogenes J2818] Length = 255 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 64/238 (26%), Positives = 129/238 (54%), Gaps = 5/238 (2%) Query: 7 FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66 +L + P + S D + + +++ V F + T+LS++ +++M T F I Sbjct: 20 ISLVVFWPGVNVHAESWLDSLGVNGTDGVNS-SVALFVLVTVLSLSASIVLMFTHFTYCI 78 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IV + R G+G ++PPN V++ LALF++ ++M P + + +P + + + Sbjct: 79 IVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQKEEWSASKVWD 138 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 ++ NT + D+++ + + +TK + L+P+F+++++ + F Sbjct: 139 ETQPLLTKYVAENTYKHDINMML----KAEGEDPVTKKEDAPLMALMPAFILTQITQGFL 194 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 G I L F+ ID+IV+T++M +GMMM+PP +ISLPFK++ F+ I G+ L+ + ++ Sbjct: 195 TGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVFIFIGGYGLITNMIFQT 252 >gi|302185358|ref|ZP_07262031.1| type III secretion system protein [Pseudomonas syringae pv. syringae 642] Length = 217 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 67/212 (31%), Positives = 115/212 (54%), Gaps = 2/212 (0%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 T + LS+ P LL++ T F + V I R +G+ VPPN+ + +AL T Sbjct: 6 TNPIMLALFLGALSLLPFLLVVCTSFLKIASVLLITRNAIGVQQVPPNMALYGIALAATL 65 Query: 97 YVMSPTLDRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154 +VM+P + + + T + + + P FM +N L+ + A Sbjct: 66 FVMAPVFSEIATIAQDNPLQLRDTRDLTRSAKALLAPLQAFMNHNVDPDVLTHLHENALR 125 Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214 + +LIP+F++SEL+ +FEIGFLI +PF++ID+IV+ +++A+GM M+ Sbjct: 126 MWPKDMAAAASRGDLLLLIPAFVLSELQAAFEIGFLIYIPFIVIDLIVSNLLLALGMQMV 185 Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 P +ISLP K++ FVL+ GW+ L+++L S++ Sbjct: 186 SPMTISLPLKILLFVLVSGWTRLLDSLFYSYM 217 >gi|283478610|emb|CAY74526.1| Surface presentation of antigens protein SpaP [Erwinia pyrifoliae DSM 12163] Length = 229 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 59/212 (27%), Positives = 115/212 (54%), Gaps = 6/212 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + G+ + ++ P L+ TCF +F IV ++R +G+ VP NL + +AL ++ +VM Sbjct: 12 ISLIGVLSFFTLLPFLIAGGTCFIKFSIVLVMMRNALGIQQVPSNLTLNGIALILSAFVM 71 Query: 100 SPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 P R + N + + ++ + + + F + + Sbjct: 72 MPVCQRIADDVESRHIDFNQSGAIPQLMDDGLGSYREYLVHYSDHDLIHFFNKVQKKRND 131 Query: 158 NTDITKNDH----IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 + ++ +H + L+P++ +SE++ +F+I F I +PF++IDM+V++I++A+GMMM Sbjct: 132 DNEVDITEHELRRLPLMTLMPAYALSEIQSAFKIAFYIYIPFVVIDMVVSSILLALGMMM 191 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 + P +IS+P K+I FV +DGWSLL + L+ + Sbjct: 192 MSPVTISIPIKLILFVAMDGWSLLAKGLITQY 223 >gi|301027456|ref|ZP_07190793.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 69-1] gi|300394964|gb|EFJ78502.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 69-1] gi|323966655|gb|EGB62087.1| YscR/HrcR family protein type III secretion lipoprotein [Escherichia coli M863] gi|323978518|gb|EGB73600.1| YscR/HrcR family protein type III secretion lipoprotein [Escherichia coli TW10509] Length = 221 Score = 161 bits (408), Expect = 8e-38, Method: Composition-based stats. Identities = 59/213 (27%), Positives = 121/213 (56%), Gaps = 4/213 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + + I ++ ++ P ++ TCF +F IVF I+R +G+ VP N+ + +AL ++ Sbjct: 2 SNSISLIAILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61 Query: 97 YVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-- 152 +VM P + NN + ++ + ++ + + +S F + Sbjct: 62 FVMMPVGKEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQKV 121 Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 +SS N +I +++I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM Sbjct: 122 NSSEDNEEIIDDENISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+ P +IS P K+I FV +DGW++L + L+ + Sbjct: 182 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214 >gi|167840284|ref|ZP_02466968.1| type III secretion system protein [Burkholderia thailandensis MSMB43] Length = 216 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 121/206 (58%), Gaps = 2/206 (0%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 ++S+ P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ Y+M+P Sbjct: 10 LLIAVLVMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAP 69 Query: 102 TLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 + + ++ Q T+ A EPF F+ ++RE++ F+ A Sbjct: 70 IGFAAQQQLQGQALSPQPTQAMLQAFGAAKEPFRRFLAAHSREREKRFFLRSASVIWPKA 129 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + +L P+F ++++ +F IGFL+ + F+I+D+++A ++M+MGM + PT++ Sbjct: 130 AAAQLRDDDLIVLAPAFTLAQMTDAFRIGFLLYIAFIIVDLVIANVLMSMGMNQVQPTNV 189 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 ++PFK++ FV++DGWS LV LV ++ Sbjct: 190 AIPFKLMLFVVMDGWSTLVHGLVLTY 215 >gi|82470758|gb|ABB77410.1| HrcR [Pantoea stewartii subsp. stewartii] Length = 217 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 69/205 (33%), Positives = 117/205 (57%), Gaps = 2/205 (0%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 LS+ PIL+I+ TCF + +V I R +G+ VPPN+ + +AL T +VM+P Sbjct: 13 LFLGALSLIPILMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVF 72 Query: 104 DRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161 ++ + Q +N T+I P FM +NT L + + + Sbjct: 73 NQMQQQFSQAPADFSNVDNLRTSITNGVTPLQKFMAHNTDPDILIHLQENSVRMWPKSMS 132 Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221 ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SL Sbjct: 133 ENISKDNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSL 192 Query: 222 PFKVIFFVLIDGWSLLVENLVKSFI 246 P K++ FVLI+GW+ L++ L S++ Sbjct: 193 PLKMLLFVLINGWTRLLDGLFYSYL 217 >gi|82524597|ref|YP_406192.1| surface presentation of antigens protein SpaP [Shigella dysenteriae Sd197] gi|187734451|ref|YP_001883216.1| type III secretion apparatus protein, YscR/HrcR family [Shigella boydii CDC 3083-94] gi|32307046|gb|AAP79016.1| Spa24 [Shigella flexneri] gi|81243995|gb|ABB64704.1| Spa24 [Shigella dysenteriae Sd197] gi|187426947|gb|ACD06222.1| type III secretion apparatus protein, YscR/HrcR family [Shigella boydii CDC 3083-94] gi|320182865|gb|EFW57740.1| surface presentation of antigens protein SpaP [Shigella flexneri CDC 796-83] Length = 216 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 57/209 (27%), Positives = 121/209 (57%), Gaps = 3/209 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + + ++ P L+ TC+ +F IVF ++R +G+ VP N+ + +AL M +VM Sbjct: 5 MSLIATLSFFTLLPFLVAAGTCYIKFSIVFVMVRNALGLQQVPSNMTLNGIALIMALFVM 64 Query: 100 SPTLDRSIEMGIQ-PLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 P ++ E + P + I++ + +++ +T + L+ F + + Sbjct: 65 KPIIEAGYENYLNGPQKFDTISDIVRFSDSGLIEYKQYLKKHTDLE-LARFFQRSEEENA 123 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + +N+ L+P++ +SE++ +F+IGF + LPF+++D+++++I++A+GMMM+ P Sbjct: 124 DLKSAENNDYSLFSLLPAYALSEIKDAFKIGFYLYLPFIVVDLVISSILLALGMMMMSPI 183 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +IS+P K++ FV +DGW +L + L++ +I Sbjct: 184 TISVPIKLVLFVALDGWGILSKALIEQYI 212 >gi|290892876|ref|ZP_06555867.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL J2-071] gi|290557688|gb|EFD91211.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL J2-071] Length = 255 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 67/241 (27%), Positives = 129/241 (53%), Gaps = 6/241 (2%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63 + +F V A+S L + D S+ V F + T+LS++ +++M T F Sbjct: 18 FAISLVFFWPGVNVHAESWLDSLGVNGTDGVNSS--VALFVMVTVLSLSASIVLMFTHFT 75 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 IIV + R G+G ++PPN V++ LALF++ ++M P + + +P + + + Sbjct: 76 YCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQKEEWSASK 135 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 ++ NT + D+++ + + +TK + L+P+F+++++ + Sbjct: 136 VWDETQPLLTKYVAENTYKHDINMML----KAEGEDPVTKKEDAPLMALMPAFILTQITQ 191 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 F G I L F+ ID+IV+T++M +GMMM+PP +ISLPFK++ F+ I G+ L+ + + Sbjct: 192 GFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVFIFIGGYGLITNMIFQ 251 Query: 244 S 244 + Sbjct: 252 T 252 >gi|16802718|ref|NP_464203.1| flagellar biosynthesis protein FliP [Listeria monocytogenes EGD-e] gi|224502019|ref|ZP_03670326.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL R2-561] gi|16410065|emb|CAC98754.1| lmo0676 [Listeria monocytogenes EGD-e] Length = 255 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 64/238 (26%), Positives = 129/238 (54%), Gaps = 5/238 (2%) Query: 7 FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66 +L + P + S D + + +++ V F + T+LS++ +++M T F I Sbjct: 20 ISLVVFWPGVNVHAESWMDSLGVNGTDGVNS-SVALFVLVTVLSLSASIVLMFTHFTYCI 78 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IV + R G+G ++PPN V++ LALF++ ++M P + + +P + + + Sbjct: 79 IVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQKEEWSASKVWD 138 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 ++ NT + D+++ + + +TK + L+P+F+++++ + F Sbjct: 139 ETQPLLTKYVAENTYKHDINMML----KAEGEDPVTKKEDAPLMALMPAFILTQITQGFL 194 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 G I L F+ ID+IV+T++M +GMMM+PP +ISLPFK++ F+ I G+ L+ + ++ Sbjct: 195 TGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVFIFIGGYGLITNMIFQT 252 >gi|300936202|ref|ZP_07151138.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 21-1] gi|300458659|gb|EFK22152.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 21-1] Length = 221 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 59/213 (27%), Positives = 121/213 (56%), Gaps = 4/213 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + + I ++ ++ P ++ TCF +F IVF I+R +G+ VP N+ + +AL ++ Sbjct: 2 SNSISLIAILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61 Query: 97 YVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-- 152 +VM P + NN + ++ + ++ + + +S F + Sbjct: 62 FVMMPVGKEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFGKIQKV 121 Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 +SS N +I +++I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM Sbjct: 122 NSSEDNEEIIDDENISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+ P +IS P K+I FV +DGW++L + L+ + Sbjct: 182 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214 >gi|46562139|ref|YP_009162.1| type III secretion system protein [Desulfovibrio vulgaris str. Hildenborough] gi|120586838|ref|YP_961183.1| type III secretion system protein [Desulfovibrio vulgaris subsp. vulgaris DP4] gi|46447676|gb|AAS94342.1| type III secretion system protein, YscR family [Desulfovibrio vulgaris str. Hildenborough] gi|120564252|gb|ABM29995.1| Yop virulence translocation R [Desulfovibrio vulgaris DP4] gi|311235512|gb|ADP88365.1| Yop virulence translocation R [Desulfovibrio vulgaris RCH1] Length = 216 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 72/206 (34%), Positives = 123/206 (59%), Gaps = 9/206 (4%) Query: 46 FTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT--- 102 +L +AP L+MVT + + ++V S++R +G+ VPP +V+ LA+ ++ ++M+P Sbjct: 13 MALLGLAPFFLMMVTSYVKIVVVTSLVRNALGVQQVPPTMVMNGLAIILSIFIMAPVASG 72 Query: 103 ---LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 L +++++G P I + + + P F+ N +K +++FM A Sbjct: 73 TLDLMQNMKIGPDPAPREIIAL---LDKASPPLRGFLERNADDKVVTVFMSTAKRIWPAD 129 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 ILIPSF ISEL R+F+IGFL+ LPF+ ID++++ I++AMGMMM+ P +I Sbjct: 130 QHASISRDNLLILIPSFTISELTRAFQIGFLLYLPFVAIDLVISNILLAMGMMMVSPMTI 189 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 SLPFK++ FV +DGW + + L+ S+ Sbjct: 190 SLPFKLLLFVTLDGWLKVSQGLLLSY 215 >gi|157159039|ref|YP_001464197.1| surface presentation of antigens protein SpaP [Escherichia coli E24377A] gi|157081069|gb|ABV20777.1| type III secretion apparatus protein EpaP [Escherichia coli E24377A] Length = 221 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 60/213 (28%), Positives = 121/213 (56%), Gaps = 4/213 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + + I ++ ++ P ++ TCF +F IVF I+R +G+ VP N+ + +AL ++ Sbjct: 2 SNSISLIAILSLFTLLPFIIASGTCFIKFSIVFVIVRKALGLQQVPSNMTLNGVALLLSM 61 Query: 97 YVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-- 152 +VM P + NN + ++ + ++ + + +S F + Sbjct: 62 FVMMPVGKEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQKV 121 Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 +SS N +I +D+I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM Sbjct: 122 NSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+ P +IS P K+I FV +DGW++L + L+ + Sbjct: 182 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214 >gi|74314952|ref|YP_313370.1| surface presentation of antigens protein SpaP [Shigella sonnei Ss046] gi|73858429|gb|AAZ91135.1| Spa24 [Shigella sonnei Ss046] Length = 216 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 57/209 (27%), Positives = 121/209 (57%), Gaps = 3/209 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + + ++ P L+ TC+ +F IVF ++R +G+ VP N+ + +AL M +VM Sbjct: 5 MSLIATLSFFTLLPFLVAAGTCYIKFSIVFVMVRNALGLQQVPSNMTLNGIALIMALFVM 64 Query: 100 SPTLDRSIEMGIQ-PLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 P ++ E + P + I++ + +++ +T + L+ F + + Sbjct: 65 KPIIEAGYENYLNGPQKFDTISDIVRFSDSGLMEYKQYLKKHTDLE-LARFFQRSEEENA 123 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + +N+ L+P++ +SE++ +F+IGF + LPF+++D+++++I++A+GMMM+ P Sbjct: 124 DLKSAENNDYSLFSLLPAYALSEIKDAFKIGFYLYLPFVVVDLVISSILLALGMMMMSPI 183 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +IS+P K++ FV +DGW +L + L++ +I Sbjct: 184 TISVPIKLVLFVALDGWGILSKALIEQYI 212 >gi|260778660|ref|ZP_05887552.1| yop virulence translocation protein R [Vibrio coralliilyticus ATCC BAA-450] gi|260604824|gb|EEX31119.1| yop virulence translocation protein R [Vibrio coralliilyticus ATCC BAA-450] Length = 216 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 66/208 (31%), Positives = 119/208 (57%), Gaps = 2/208 (0%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + +S+ P+ +M T F + IV S+LR +G+ +PPN+ I LAL +T + M Sbjct: 8 IQLIAVLFFMSLLPLFAVMGTSFLKLSIVLSMLRNALGIQQIPPNMAIYGLALILTMFTM 67 Query: 100 SPTLDRS-IEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +P + P+ + I ++ P+ F+ +NT + + F ++ H Sbjct: 68 APVGLAIRDNLAAHPVDWASPEVFSQISDQIIAPYHQFLSHNTSDTQIQFFSEIGHKIWP 127 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 ++ +++P+F +S+L +F+IGFL+ LPF+ ID+IV+ I++AMGMMM+ P Sbjct: 128 EQYQSELSKDSLLVMVPAFTMSQLIEAFKIGFLLYLPFVAIDLIVSNILLAMGMMMVSPM 187 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 +I+LPFK++ F+L+ GW L+ L+ SF Sbjct: 188 TIALPFKLLIFILMGGWDKLIGQLMGSF 215 >gi|206895630|ref|YP_002246700.1| flagellar biosynthetic protein FliP [Coprothermobacter proteolyticus DSM 5265] gi|206738247|gb|ACI17325.1| flagellar biosynthetic protein FliP [Coprothermobacter proteolyticus DSM 5265] Length = 218 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 62/213 (29%), Positives = 118/213 (55%), Gaps = 8/213 (3%) Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92 S +V+ + T+ ++AP ++ T F R ++VF+ +R+ +G+ PP V +LAL Sbjct: 13 GSGGLSMVQLIVLLTVFTLAPSFIMFFTSFLRILVVFAFMRSALGLQQFPPAQVFTALAL 72 Query: 93 FMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152 +TF +M P + + P Q+ + +P +M + ++L+ ++ Sbjct: 73 ILTFLIMGPVFSQVYQQAWVPYSQGQMDFQQFLSAAEKPVGDWMLKQVKPEELNTMASIS 132 Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 + +N + + L +FM+SEL+ +F +G L+ LPF+ +D+I+A+++M++GM Sbjct: 133 GTDPKNPN--------FTTLASAFMVSELKTAFTMGLLLYLPFIALDVIIASVLMSLGMF 184 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+PP ISLP K++ FV +GW ++ LV+SF Sbjct: 185 MIPPAMISLPLKILLFVAANGWDTVIMGLVRSF 217 >gi|15803389|ref|NP_289422.1| surface presentation of antigens protein SpaP [Escherichia coli O157:H7 EDL933] gi|15832979|ref|NP_311752.1| surface presentation of antigens protein SpaP [Escherichia coli O157:H7 str. Sakai] gi|168747669|ref|ZP_02772691.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7 str. EC4113] gi|168753791|ref|ZP_02778798.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7 str. EC4401] gi|168759981|ref|ZP_02784988.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7 str. EC4501] gi|168766846|ref|ZP_02791853.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7 str. EC4486] gi|168775730|ref|ZP_02800737.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7 str. EC4196] gi|168778867|ref|ZP_02803874.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7 str. EC4076] gi|168785699|ref|ZP_02810706.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7 str. EC869] gi|168799986|ref|ZP_02824993.1| fliP family protein [Escherichia coli O157:H7 str. EC508] gi|195936471|ref|ZP_03081853.1| surface presentation of antigens protein SpaP [Escherichia coli O157:H7 str. EC4024] gi|208806889|ref|ZP_03249226.1| fliP family protein [Escherichia coli O157:H7 str. EC4206] gi|208812978|ref|ZP_03254307.1| fliP family protein [Escherichia coli O157:H7 str. EC4045] gi|208820470|ref|ZP_03260790.1| fliP family protein [Escherichia coli O157:H7 str. EC4042] gi|209399259|ref|YP_002272331.1| fliP family protein [Escherichia coli O157:H7 str. EC4115] gi|217326775|ref|ZP_03442858.1| fliP family protein [Escherichia coli O157:H7 str. TW14588] gi|254794806|ref|YP_003079643.1| surface presentation of antigens protein SpaP [Escherichia coli O157:H7 str. TW14359] gi|261226166|ref|ZP_05940447.1| putative integral membrane protein-component of typeIII secretion apparatus [Escherichia coli O157:H7 str. FRIK2000] gi|261256580|ref|ZP_05949113.1| putative integral membrane protein-component of typeIII secretion apparatus [Escherichia coli O157:H7 str. FRIK966] gi|12517367|gb|AAG57981.1|AE005515_3 putative integral membrane protein-component of typeIII secretion apparatus [Escherichia coli O157:H7 str. EDL933] gi|13363197|dbj|BAB37148.1| type III secretion protein EpaP [Escherichia coli O157:H7 str. Sakai] gi|187768768|gb|EDU32612.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7 str. EC4196] gi|188017894|gb|EDU56016.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7 str. EC4113] gi|189003561|gb|EDU72547.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7 str. EC4076] gi|189358717|gb|EDU77136.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7 str. EC4401] gi|189363672|gb|EDU82091.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7 str. EC4486] gi|189369400|gb|EDU87816.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7 str. EC4501] gi|189373795|gb|EDU92211.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7 str. EC869] gi|189377645|gb|EDU96061.1| fliP family protein [Escherichia coli O157:H7 str. EC508] gi|208726690|gb|EDZ76291.1| fliP family protein [Escherichia coli O157:H7 str. EC4206] gi|208734255|gb|EDZ82942.1| fliP family protein [Escherichia coli O157:H7 str. EC4045] gi|208740593|gb|EDZ88275.1| fliP family protein [Escherichia coli O157:H7 str. EC4042] gi|209160659|gb|ACI38092.1| fliP family protein [Escherichia coli O157:H7 str. EC4115] gi|217319142|gb|EEC27567.1| fliP family protein [Escherichia coli O157:H7 str. TW14588] gi|254594206|gb|ACT73567.1| putative integral membrane protein-component of typeIII secretion apparatus [Escherichia coli O157:H7 str. TW14359] Length = 221 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 60/213 (28%), Positives = 121/213 (56%), Gaps = 4/213 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + + I ++ ++ P ++ TCF +F IVF I+R +G+ VP N+ + +AL ++ Sbjct: 2 SNSISLIAILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61 Query: 97 YVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-- 152 +VM P + NN + ++ + ++ + + +S F + Sbjct: 62 FVMMPVGKEIYYNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQKV 121 Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 +SS N +I +D+I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM Sbjct: 122 NSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+ P +IS P K+I FV +DGW++L + L+ + Sbjct: 182 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214 >gi|88704277|ref|ZP_01101991.1| flagellar biosynthetic protein FliP [Congregibacter litoralis KT71] gi|88701328|gb|EAQ98433.1| flagellar biosynthetic protein FliP [Congregibacter litoralis KT71] Length = 248 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 94/240 (39%), Positives = 145/240 (60%), Gaps = 6/240 (2%) Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSIS--TWIVRTFGIFTILSIAPILLIMVTCFPRF 65 + L+ PE A++ + V P+ + + ++ + T+L++ P LI +T F R Sbjct: 11 LMLLLMPETALAQAGIPLVSVQPSAAGGNDYSMSIQILLLMTLLTLIPAALITMTSFTRI 70 Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 +IV +ILR +G P N +I+ L+LF++ ++M+P + + +QP MN + + A+ Sbjct: 71 LIVLAILRQALGTAQTPSNQIILGLSLFLSLFIMAPVFETAWVTALQPYMNETVGFSEAL 130 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185 PF FM TRE DL LF ++ NT D + +L+PSF+ SEL+ +F Sbjct: 131 DAAKIPFREFMFGQTRETDLLLFAELGGYEPFNT----RDDVPMVVLLPSFLTSELKTAF 186 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +IGFL+ +PFLIID++VA ++M+MGMMML P ISLPFK++ FVLIDGWSL+ LV SF Sbjct: 187 QIGFLMFVPFLIIDLVVAAVLMSMGMMMLSPMLISLPFKLMLFVLIDGWSLIAATLVTSF 246 >gi|13449100|ref|NP_085316.1| Type III secretion protein [Shigella flexneri 5a] gi|31983543|ref|NP_858286.1| surface presentation of antigens protein SpaP [Shigella flexneri 2a str. 301] gi|60415913|sp|P0A1L3|SPAP_SHIFL RecName: Full=Surface presentation of antigens protein spaP; AltName: Full=Spa24 protein gi|60415914|sp|P0A1L4|SPAP_SHISO RecName: Full=Surface presentation of antigens protein spaP; AltName: Full=Spa24 protein gi|13310648|gb|AAK18472.1|AF348706_161 Type III secretion protein [Shigella flexneri 5a] gi|152795|gb|AAA26544.1| spa24 [Shigella flexneri] gi|303893|dbj|BAA02829.1| spa24 [Shigella flexneri] gi|829080|dbj|BAA09162.1| ORF22 [Shigella sonnei] gi|12329097|emb|CAC05828.1| Spa24, component of the Mxi-Spa secretion machinery [Shigella flexneri] gi|18462535|gb|AAL72307.1| Spa24, component of the Mxi-Spa secretion machinery [Shigella flexneri 2a str. 301] gi|281603908|gb|ADA76891.1| surface presentation of antigens protein SpaP [Shigella flexneri 2002017] Length = 216 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 57/209 (27%), Positives = 121/209 (57%), Gaps = 3/209 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + + ++ P L+ TC+ +F IVF ++R +G+ VP N+ + +AL M +VM Sbjct: 5 MSLIATLSFFTLLPFLVAAGTCYIKFSIVFVMVRNALGLQQVPSNMTLNGIALIMALFVM 64 Query: 100 SPTLDRSIEMGIQ-PLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 P ++ E + P + I++ + +++ +T + L+ F + + Sbjct: 65 KPIIEAGYENYLNGPQKFDTISDIVRFSDSGLMEYKQYLKKHTDLE-LARFFQRSEEENA 123 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + +N+ L+P++ +SE++ +F+IGF + LPF+++D+++++I++A+GMMM+ P Sbjct: 124 DLKSAENNDYSLFSLLPAYALSEIKDAFKIGFYLYLPFVVVDLVISSILLALGMMMMSPI 183 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +IS+P K++ FV +DGW +L + L++ +I Sbjct: 184 TISVPIKLVLFVALDGWGILSKALIEQYI 212 >gi|330876194|gb|EGH10343.1| type III secretion system protein YscR [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330963708|gb|EGH63968.1| type III secretion system protein YscR [Pseudomonas syringae pv. actinidiae str. M302091] Length = 218 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 60/214 (28%), Positives = 108/214 (50%), Gaps = 2/214 (0%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 ++ + + + P+ ++ +T F + +V ++R +G+ PPNLV+ +AL Sbjct: 3 GYQPNLIEIIVVVATIGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIALI 62 Query: 94 MTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 ++ YV +P + G + N + P + E + F+ Sbjct: 63 LSVYVTTPLIGDMYREVQGRDLSLQNVQQLEELGSALRPPLQAHLSKFANESERGFFVQA 122 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + + +LIP+F+ SEL R+FEIGFL+ +PFL++D++V+ ++MAMGM Sbjct: 123 TETIWSPEARADLRDDDLVVLIPAFVSSELTRAFEIGFLLYIPFLVVDLLVSNVLMAMGM 182 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+ PT IS+P K+ FV + GWS L+ L+ S+ Sbjct: 183 SMVSPTLISIPLKIFLFVALSGWSRLMHGLILSY 216 >gi|320103855|ref|YP_004179446.1| type III secretion system inner membrane P protein [Isosphaera pallida ATCC 43644] gi|319751137|gb|ADV62897.1| type III secretion system inner membrane P protein [Isosphaera pallida ATCC 43644] Length = 247 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 72/243 (29%), Positives = 124/243 (51%), Gaps = 5/243 (2%) Query: 8 ALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67 + + FA++S + G+ I S+AP ++M+T + R I Sbjct: 3 MVVATAAAVWFAQTSAGASEGWGPLPPDLARSAASVGVVAIASLAPAAVLMLTAYVRISI 62 Query: 68 VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127 V ++LR +G +P N V++ L++ +T VM P D E I+P ++ A Sbjct: 63 VLALLRQALGSPQIPGNQVVMMLSILLTILVMKPVADVVAERAIRPFAAGELDYAQAFAA 122 Query: 128 VAEPFWVFMRNN----TREKDLSLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMISELR 182 AEP FM + E+ L D+A T + D + R++ +F+ISE+ Sbjct: 123 GAEPVKRFMVKQIVACSNERYLITLHDLAEPPETRTHQPEYLDELPLRVVAAAFLISEIN 182 Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242 + +GF I LPFL+ID++ A ++ AMG+ +LPP +++P K++ FVL +GW L+ + L+ Sbjct: 183 VALWMGFAIYLPFLVIDLVTAAVLAAMGLYLLPPAQVAIPLKLMVFVLAEGWWLVAQTLL 242 Query: 243 KSF 245 +SF Sbjct: 243 RSF 245 >gi|85059283|ref|YP_454985.1| type III secretion system protein [Sodalis glossinidius str. 'morsitans'] gi|84779803|dbj|BAE74580.1| putative type III secretion apparatus [Sodalis glossinidius str. 'morsitans'] Length = 215 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 67/190 (35%), Positives = 112/190 (58%), Gaps = 3/190 (1%) Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN- 116 M T F + +V SILR +G+ VPPN+ + LAL ++ ++M+PT +++ P+ Sbjct: 26 MGTSFLKLAVVLSILRNALGIQQVPPNMALYGLALILSLFIMAPTAL-AVKAQWHPVAAP 84 Query: 117 -NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPS 175 + + + P+ F+R N EK++ F + + + IL+P+ Sbjct: 85 GDTPWASGWDGKALMPYRQFLRRNADEKEIRYFHQLVTKTWPEEARRRVRPDSLLILLPA 144 Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235 F +S+L ++F IG LI LPFL ID++V+ +++AMGMMM+ P +ISLPFK++ F+L GW Sbjct: 145 FTVSQLSQAFRIGLLIYLPFLAIDLLVSNVLLAMGMMMVSPMTISLPFKLLIFMLAGGWD 204 Query: 236 LLVENLVKSF 245 L++ LV+SF Sbjct: 205 LILSQLVQSF 214 >gi|238798580|ref|ZP_04642057.1| Flagellar biosynthetic protein fliP [Yersinia mollaretii ATCC 43969] gi|238717600|gb|EEQ09439.1| Flagellar biosynthetic protein fliP [Yersinia mollaretii ATCC 43969] Length = 207 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 67/187 (35%), Positives = 112/187 (59%), Gaps = 6/187 (3%) Query: 21 SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 + L +++ P +W ++T + T LS P L+M+T F R IIV +LR +G Sbjct: 25 AQLPGIISQPLANGGQSWSLPIQTLVLITSLSFLPAALLMMTSFTRIIIVLGLLRNALGT 84 Query: 79 GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138 S PPN V++ LALF+TF++MSP D+ + P ++I+ A+ + A+P FM Sbjct: 85 PSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAMDKGAQPLREFMLR 144 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 TRE DL+L+ +A+ + + + RIL+P+++ SEL+ +F+IGF + +PFLII Sbjct: 145 QTRESDLALYARLANLP----PLEGPEMVPLRILLPAYVTSELKTAFQIGFTVFIPFLII 200 Query: 199 DMIVATI 205 D++VA++ Sbjct: 201 DLVVASV 207 >gi|299822252|ref|ZP_07054138.1| flagellar biosynthesis protein FliP [Listeria grayi DSM 20601] gi|299815781|gb|EFI83019.1| flagellar biosynthesis protein FliP [Listeria grayi DSM 20601] Length = 255 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 60/214 (28%), Positives = 115/214 (53%), Gaps = 4/214 (1%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 S V F I T+LS++ +++M T F IIV + R G+G ++PPN V++ L Sbjct: 43 NGTSGVNSNVSLFLIVTLLSLSASIVLMFTHFTYCIIVLGLTRQGLGATNLPPNQVLVGL 102 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 ALF+ ++M P + + +P + + + ++ NT D+++ + Sbjct: 103 ALFLAIFMMQPVANEWYQDVWKPGQKEEWKASKVWKETQPILTTYIAKNTYRHDINMML- 161 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 + + K + L+P+F+++++ + F G I L F+ ID++V+T++M +G Sbjct: 162 ---KAEGKKAVAKKEDASLMALMPAFILTQITQGFLTGMFIYLAFVFIDLVVSTLLMYLG 218 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 MMM+PP +ISLPFK++ F+ I G+ L+ + ++ Sbjct: 219 MMMVPPMTISLPFKILVFIFIGGYGLITNMMFQT 252 >gi|217965226|ref|YP_002350904.1| flagellar biosynthesis protein [Listeria monocytogenes HCC23] gi|217334496|gb|ACK40290.1| flagellar biosynthesis protein [Listeria monocytogenes HCC23] gi|307570215|emb|CAR83394.1| flagellar biosynthesis protein [Listeria monocytogenes L99] Length = 255 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 67/241 (27%), Positives = 128/241 (53%), Gaps = 6/241 (2%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63 + +F V A+S L + D S+ V F + T+LS++ +++M T F Sbjct: 18 FAISLVFFWPGVNVHAESWLDSLGVNGTDGVNSS--VALFVMVTVLSLSASIVLMFTHFT 75 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123 IIV + R G+G ++PPN V++ LALF++ ++M P + + +P + + Sbjct: 76 YCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQKEDWSASK 135 Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183 ++ NT + D+++ + + +TK + L+P+F+++++ + Sbjct: 136 VWDETQPLLTKYVAENTYKHDINMML----KAEGEDPVTKKEDAPLMALMPAFILTQITQ 191 Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243 F G I L F+ ID+IV+T++M +GMMM+PP +ISLPFK++ F+ I G+ L+ + + Sbjct: 192 GFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVFIFIGGYGLITNMIFQ 251 Query: 244 S 244 + Sbjct: 252 T 252 >gi|51103119|gb|AAT96262.1| HrcR [Pseudomonas viridiflava] gi|51103161|gb|AAT96303.1| HrcR [Pseudomonas viridiflava] gi|51103202|gb|AAT96343.1| HrcR [Pseudomonas viridiflava] Length = 193 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 60/193 (31%), Positives = 108/193 (55%), Gaps = 2/193 (1%) Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ--P 113 +I+ T F + +V I R +G+ PPN+ + +AL T ++M+P + + Sbjct: 1 MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE 60 Query: 114 LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILI 173 ++ +A + V EP FM N + ++ K + +++ Sbjct: 61 HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV 120 Query: 174 PSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDG 233 P+F++SEL+ F+IGFLI +PF++ID+IV+ I++A+GM M+ P +ISLP K++ FVL+DG Sbjct: 121 PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG 180 Query: 234 WSLLVENLVKSFI 246 W+ L++ L S++ Sbjct: 181 WTRLLDGLFYSYM 193 >gi|167584013|ref|ZP_02376401.1| type III secretion system protein [Burkholderia ubonensis Bu] Length = 216 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 121/206 (58%), Gaps = 2/206 (0%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 ++S+ P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ Y+M+P Sbjct: 10 LLIAVLVMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAP 69 Query: 102 TLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 + + ++ Q T+ A EPF F+ ++RE++ F+ A Sbjct: 70 IGFAAQQQLQGQALSPQPTQAMLQAFGAAKEPFRQFLAAHSREREKRFFLRSASVIWPKA 129 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + +L P+F ++++ +F IGF++ + F+I+D+++A ++M+MGM + PT++ Sbjct: 130 AAAQLRDDDLIVLAPAFTLAQMTDAFRIGFILYIAFIIVDLVIANVLMSMGMNQVQPTNV 189 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 ++PFK++ FV++DGWS LV LV ++ Sbjct: 190 AIPFKLMLFVVMDGWSTLVHGLVLTY 215 >gi|257487956|ref|ZP_05641997.1| type III secretion system protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289646626|ref|ZP_06477969.1| type III secretion system protein [Pseudomonas syringae pv. aesculi str. 2250] gi|320324517|gb|EFW80594.1| type III secretion system protein [Pseudomonas syringae pv. glycinea str. B076] gi|320328890|gb|EFW84889.1| type III secretion system protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330879022|gb|EGH13171.1| type III secretion system protein YscR [Pseudomonas syringae pv. glycinea str. race 4] gi|331008645|gb|EGH88701.1| type III secretion system protein YscR [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 218 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 60/214 (28%), Positives = 108/214 (50%), Gaps = 2/214 (0%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 ++ + + + P+ ++ +T F + +V ++R +G+ PPNLV+ +AL Sbjct: 3 GYQPNLIEIILVVATIGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIALI 62 Query: 94 MTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 ++ YV +P + G + N + P + E + F+ Sbjct: 63 LSVYVTTPLIGDMYREVQGRDLSLQNVQQLEELGSALRPPLQAHLSKFANESERGFFVQA 122 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + + +LIP+F+ SEL R+FEIGFL+ +PFL++D++V+ ++MAMGM Sbjct: 123 TETIWSPEARADLRDDDLVVLIPAFVSSELTRAFEIGFLLYIPFLVVDLLVSNVLMAMGM 182 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+ PT IS+P K+ FV + GWS L+ L+ S+ Sbjct: 183 SMVSPTLISIPLKIFLFVALSGWSRLMHGLILSY 216 >gi|237800781|ref|ZP_04589242.1| type III secretion system protein YscR [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023639|gb|EGI03696.1| type III secretion system protein YscR [Pseudomonas syringae pv. oryzae str. 1_6] Length = 218 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 60/214 (28%), Positives = 108/214 (50%), Gaps = 2/214 (0%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 ++ + + + P+ ++ +T F + +V ++R +G+ PPNLV+ +AL Sbjct: 3 GYQPNLIEIILVVATIGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIALI 62 Query: 94 MTFYVMSPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 ++ YV +P + G + N + P + E + F+ Sbjct: 63 LSVYVTTPLIGDMYRQVEGRDLSLQNVQQLEELGSALRPPLQAHLSKFANESERGFFVQA 122 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + + +LIP+F+ SEL R+FEIGFL+ +PFL++D++V+ ++MAMGM Sbjct: 123 TETIWSPEARADLRDDDLVVLIPAFVSSELTRAFEIGFLLYIPFLVVDLLVSNVLMAMGM 182 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+ PT IS+P K+ FV + GWS L+ L+ S+ Sbjct: 183 SMVSPTLISIPLKIFLFVALSGWSRLMHGLILSY 216 >gi|254830333|ref|ZP_05234988.1| flagellar biosynthesis protein FliP [Listeria monocytogenes 10403S] Length = 255 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 63/238 (26%), Positives = 128/238 (53%), Gaps = 5/238 (2%) Query: 7 FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66 +L + P + S D + + +++ V F + T+LS++ +++M T F I Sbjct: 20 ISLVVFWPGVNVHAESWMDSLGVNGTDGVNS-SVALFVLVTVLSLSASIVLMFTHFTYCI 78 Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126 IV + R G+G ++PPN V++ LALF++ ++M P + + +P + + + Sbjct: 79 IVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQKEEWSASKVWD 138 Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 ++ NT + D+++ + + +T + L+P+F+++++ + F Sbjct: 139 ETQPLLTKYVAENTYKHDINMML----KAEGEDPVTNKEDAPLMALMPAFILTQITQGFL 194 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 G I L F+ ID+IV+T++M +GMMM+PP +ISLPFK++ F+ I G+ L+ + ++ Sbjct: 195 TGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVFIFIGGYGLITNMIFQT 252 >gi|292487016|ref|YP_003529886.1| Harpin secretion protein HrcR [Erwinia amylovora CFBP1430] gi|292900599|ref|YP_003539968.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|114152817|sp|Q46646|HRCR_ERWAM RecName: Full=Harpin secretion protein hrcR gi|89474870|gb|AAB06005.2| HrcR [Erwinia amylovora] gi|291200447|emb|CBJ47576.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291552433|emb|CBA19478.1| Harpin secretion protein HrcR [Erwinia amylovora CFBP1430] gi|312171085|emb|CBX79344.1| Harpin secretion protein HrcR [Erwinia amylovora ATCC BAA-2158] Length = 217 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 118/205 (57%), Gaps = 2/205 (0%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 LS+ P+L+I+ TCF + +V I R +G+ VPPN+ + +AL T +VM+P Sbjct: 13 LFLGALSLIPMLMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVF 72 Query: 104 DRSIEMGIQ--PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161 ++ + Q +++ T++ P FM +NT L + + Sbjct: 73 NQMQQQFSQVPADLSSMDNLKTSVTNGVAPLQKFMTHNTDPDILIHLQENSVRMWPKEMS 132 Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221 + ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SL Sbjct: 133 DSVNKDNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSL 192 Query: 222 PFKVIFFVLIDGWSLLVENLVKSFI 246 P K++ FVLI+GW+ L++ L S++ Sbjct: 193 PLKMLLFVLINGWTRLLDGLFYSYL 217 >gi|188532666|ref|YP_001906463.1| type III secretion system protein [Erwinia tasmaniensis Et1/99] gi|188027708|emb|CAO95561.1| HrcR protein (hrp cluster) [Erwinia tasmaniensis Et1/99] Length = 217 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 65/205 (31%), Positives = 117/205 (57%), Gaps = 2/205 (0%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 LS+ P+L+I+ TCF + +V I R +G+ VPPN+ + +AL T +VM+P Sbjct: 13 LFLGALSLIPMLMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVF 72 Query: 104 DRSIEMGIQ--PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161 ++ + Q +++ + ++ P FM +NT L + + Sbjct: 73 NQMQQQFSQSPADLSSMDSLKNSVTHGVAPLQKFMTHNTDPDILIHLQENSVRMWPKEMS 132 Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221 ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SL Sbjct: 133 DSVSKDNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSL 192 Query: 222 PFKVIFFVLIDGWSLLVENLVKSFI 246 P K++ FVLI+GW+ L++ L S++ Sbjct: 193 PLKMLLFVLINGWTRLLDGLFYSYL 217 >gi|126444918|ref|YP_001063272.1| type III secretion system protein [Burkholderia pseudomallei 668] gi|167743328|ref|ZP_02416102.1| type III secretion system protein [Burkholderia pseudomallei 14] gi|167898938|ref|ZP_02486339.1| type III secretion system protein [Burkholderia pseudomallei 7894] gi|167923471|ref|ZP_02510562.1| type III secretion system protein [Burkholderia pseudomallei BCC215] gi|217422186|ref|ZP_03453689.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 576] gi|237510472|ref|ZP_04523187.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei MSHR346] gi|126224409|gb|ABN87914.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 668] gi|217394417|gb|EEC34436.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 576] gi|235002677|gb|EEP52101.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei MSHR346] Length = 216 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 121/206 (58%), Gaps = 2/206 (0%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 ++S+ P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ Y+M+P Sbjct: 10 LLIAVLVMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAP 69 Query: 102 TLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 + + ++ Q T+ A EPF F+ ++RE++ F+ A Sbjct: 70 IGFAAQQQLQGQALSPQPTQAMLQAFGAAKEPFRRFLAAHSREREKRFFLRSASVIWPQA 129 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + +L P+F ++++ +F IGF++ + F+I+D+++A ++M+MGM + PT++ Sbjct: 130 AAAQLRDDDLIVLAPAFTLAQMTDAFRIGFILYIAFIIVDLVIANVLMSMGMNQVQPTNV 189 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 ++PFK++ FV++DGWS LV LV ++ Sbjct: 190 AIPFKLMLFVVMDGWSTLVHGLVLTY 215 >gi|83718233|ref|YP_438951.1| type III secretion system protein [Burkholderia thailandensis E264] gi|167577333|ref|ZP_02370207.1| type III secretion system protein [Burkholderia thailandensis TXDOH] gi|167615481|ref|ZP_02384116.1| type III secretion system protein [Burkholderia thailandensis Bt4] gi|257142055|ref|ZP_05590317.1| type III secretion system protein [Burkholderia thailandensis E264] gi|83652058|gb|ABC36122.1| type III secretion inner membrane protein SctR [Burkholderia thailandensis E264] Length = 216 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 121/206 (58%), Gaps = 2/206 (0%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 ++S+ P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ Y+M+P Sbjct: 10 LLIAVLVMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAP 69 Query: 102 TLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 + + ++ Q T+ A EPF F+ ++RE++ F+ A Sbjct: 70 IGFAAQQQLQGQALSPQPTQAMLQAFGAAKEPFRQFLAAHSREREKRFFLRSASVVWPKA 129 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + +L P+F ++++ +F IGF++ + F+I+D+++A ++M+MGM + PT++ Sbjct: 130 AAAQLREDDLIVLAPAFTLAQMTDAFRIGFILYIAFVIVDLVIANVLMSMGMNQVQPTNV 189 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 ++PFK++ FV++DGWS LV LV ++ Sbjct: 190 AIPFKLMLFVVMDGWSTLVHGLVLTY 215 >gi|118592626|ref|ZP_01550016.1| Type III secretory pathway, component EscR [Stappia aggregata IAM 12614] gi|118434677|gb|EAV41328.1| Type III secretory pathway, component EscR [Stappia aggregata IAM 12614] Length = 212 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 64/209 (30%), Positives = 114/209 (54%), Gaps = 2/209 (0%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + + P + ++ T F + +V ++R +G+ +PPN+ + +LA+ ++ Y+M Sbjct: 4 LNLILALGAAAFVPFMAVVATSFIKIAVVLLLVRNALGVQQIPPNMALNALAIILSGYIM 63 Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +P ++ + + N N A P F+ + ++ F+ Sbjct: 64 APVFFQTFMIVQEGNFNFGNLEGLQEAYNASKGPLIEFLDKHAEGREKLFFLKATAELWP 123 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 D +++P+F IS+LR +FEIGFL+ LPF+ ID++V+ I++AMGMMM+ P Sbjct: 124 ADLAAMADENSIFVILPAFTISQLREAFEIGFLLYLPFVAIDLVVSNILLAMGMMMVSPL 183 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +ISLPFK+ FV++DGWS L+ LVK++I Sbjct: 184 TISLPFKLFLFVMVDGWSRLILGLVKTYI 212 >gi|330953282|gb|EGH53542.1| type III secretion system protein YscR [Pseudomonas syringae Cit 7] Length = 218 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 60/214 (28%), Positives = 108/214 (50%), Gaps = 2/214 (0%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 ++ + + + P+ ++ +T F + +V ++R +G+ PPNLV+ +AL Sbjct: 3 GYQPNLIEIILVVATIGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIALI 62 Query: 94 MTFYVMSPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 ++ YV +P + G + N + P + E + F+ Sbjct: 63 LSVYVTTPLIGDMYRQVQGRDLSLQNVQQLEELGSALRPPLQAHLSKFANESERGFFVQA 122 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + + +LIP+F+ SEL R+FEIGFL+ +PFL++D++V+ ++MAMGM Sbjct: 123 TETIWSPEARADLRDDDLVVLIPAFVSSELTRAFEIGFLLYIPFLVVDLLVSNVLMAMGM 182 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+ PT IS+P K+ FV + GWS L+ L+ S+ Sbjct: 183 SMVSPTLISIPLKIFLFVALSGWSRLMHGLILSY 216 >gi|167566298|ref|ZP_02359214.1| type III secretion system protein [Burkholderia oklahomensis EO147] gi|167573400|ref|ZP_02366274.1| type III secretion system protein [Burkholderia oklahomensis C6786] Length = 216 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 121/206 (58%), Gaps = 2/206 (0%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 ++S+ P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ Y+M+P Sbjct: 10 LLIAVLVMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAP 69 Query: 102 TLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 + + ++ Q T+ A EPF F+ ++RE++ F+ A Sbjct: 70 IGFAAQQQLQGQALSPQPTQAMLQAFGAAKEPFRQFLAAHSREREKRFFLRSASVIWPKA 129 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + +L P+F ++++ +F IGF++ + F+I+D+++A ++M+MGM + PT++ Sbjct: 130 AAAQLREDDLIVLAPAFTLAQMTDAFRIGFILYIAFIIVDLVIANVLMSMGMNQVQPTNV 189 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 ++PFK++ FV++DGWS LV LV ++ Sbjct: 190 AIPFKLMLFVVMDGWSTLVHGLVLTY 215 >gi|167828878|ref|ZP_02460349.1| type III secretion system protein [Burkholderia pseudomallei 9] gi|226198433|ref|ZP_03794001.1| type III secretion inner membrane protein SctR [Burkholderia pseudomallei Pakistan 9] gi|225929490|gb|EEH25509.1| type III secretion inner membrane protein SctR [Burkholderia pseudomallei Pakistan 9] Length = 216 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 121/206 (58%), Gaps = 2/206 (0%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 ++S+ P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ Y+M+P Sbjct: 10 LLIAVLVMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAP 69 Query: 102 TLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 + + M+ Q T+ A EPF F+ ++RE++ F+ A Sbjct: 70 IGFAAQQQLQGQAMSPQPTQAMLQAFGAAKEPFRRFLAAHSREREKRFFLRSASVIWPQA 129 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + +L P+F ++++ +F IGF++ + F+I+D+++A ++M+MGM + PT++ Sbjct: 130 AAAQLRDDDLIVLAPAFTLAQMTDAFRIGFILYIAFIIVDLVIANVLMSMGMNQVQPTNV 189 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 ++PFK++ FV++DGWS LV LV ++ Sbjct: 190 AIPFKLMLFVVMDGWSTLVHGLVLTY 215 >gi|298487104|ref|ZP_07005154.1| type III secretion system inner membrane protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158347|gb|EFH99417.1| type III secretion system inner membrane protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 218 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 60/214 (28%), Positives = 108/214 (50%), Gaps = 2/214 (0%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 ++ + + + P+ ++ +T F + +V ++R +G+ PPNLV+ +AL Sbjct: 3 GYQPNLIEIILVVATIGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIALI 62 Query: 94 MTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 ++ YV +P + G + N + P + E + F+ Sbjct: 63 LSVYVTTPLIGDMYREVQGRDLSLQNVQQLEELGSALRPPLQAHLSKFANESERGFFVQA 122 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + + +LIP+F+ SEL R+FEIGFL+ +PFL++D++V+ ++MAMGM Sbjct: 123 TETIWSPEARADLCDDDLVVLIPAFVSSELTRAFEIGFLLYIPFLVVDLLVSNVLMAMGM 182 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+ PT IS+P K+ FV + GWS L+ L+ S+ Sbjct: 183 SMVSPTLISIPLKIFLFVALSGWSRLMHGLILSY 216 >gi|256259402|gb|ACU65039.1| HrcR [Pseudomonas syringae pv. syringae] Length = 208 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 66/207 (31%), Positives = 113/207 (54%), Gaps = 2/207 (0%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 LS+ P LL++ T F + V I R +G+ VPPN+ + +AL T +VM+P Sbjct: 2 LALFLGALSLLPFLLVVCTSFLKIASVLLITRNAIGVQQVPPNMALYGIALAATLFVMAP 61 Query: 102 TLDRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 + + + T + + + P FM +N L+ + A Sbjct: 62 VFSEIATIAQDNPLQLRDTRDLTRSAKALLAPLQAFMNHNVDPDVLTHLHENALRMWPKD 121 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + +LIP+F++SEL+ +FEIGFLI +PF++ID+IV+ +++A+GM M+ P +I Sbjct: 122 MAAAASRGDLLLLIPAFVLSELQAAFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTI 181 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246 SLP K++ FVL+ GW+ L+++L S++ Sbjct: 182 SLPLKILLFVLVSGWTRLLDSLFYSYM 208 >gi|259909718|ref|YP_002650074.1| type III secretion system protein [Erwinia pyrifoliae Ep1/96] gi|224965340|emb|CAX56872.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-harpin secretion protein [Erwinia pyrifoliae Ep1/96] gi|283479804|emb|CAY75720.1| Harpin secretion protein HrcR [Erwinia pyrifoliae DSM 12163] gi|310766418|gb|ADP11368.1| type III secretion system protein [Erwinia sp. Ejp617] Length = 217 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 117/205 (57%), Gaps = 2/205 (0%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 LS+ P+L+I+ TCF + +V I R +G+ VPPN+ + +AL T +VM+P Sbjct: 13 LFLGALSLIPMLMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVF 72 Query: 104 DRSIEMGIQ--PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161 ++ + Q +++ T++ P FM +NT L + + Sbjct: 73 NQMQQQFSQVPADLSSMDNLKTSVSNGVAPLQKFMTHNTDPDILIHLQENSVRMWPKEMS 132 Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221 ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SL Sbjct: 133 DSVSKDNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSL 192 Query: 222 PFKVIFFVLIDGWSLLVENLVKSFI 246 P K++ FVLI+GW+ L++ L S++ Sbjct: 193 PLKMLLFVLINGWTRLLDGLFYSYL 217 >gi|238759389|ref|ZP_04620554.1| Surface presentation of antigens protein spaP [Yersinia aldovae ATCC 35236] gi|238702416|gb|EEP94968.1| Surface presentation of antigens protein spaP [Yersinia aldovae ATCC 35236] Length = 223 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 59/211 (27%), Positives = 116/211 (54%), Gaps = 4/211 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + I ++ P ++ TC+ + IV ++R MG+ VP +L + +AL ++ +VM Sbjct: 8 IPLLAIIAFSTLLPFIIAAGTCYLKISIVLIMVRNAMGVQQVPSSLTLNGIALLLSLFVM 67 Query: 100 SPTLDRSIEMG--IQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 P + + Q +N + ++ + +++ + + L+ F + Sbjct: 68 MPVIQDVNQYMRTEQVDFSNVDSVDNFVEGGLGSYKAYLKKYSDPELLNFFESLQQGRSE 127 Query: 158 NTDITKND--HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215 + + D L+P++ +SE++ +FEIGF I LPF++ID+I+++I++A+GMMM+ Sbjct: 128 EQAMDEADTREPTLFSLLPAYALSEIKSAFEIGFYIYLPFVVIDLIISSILLALGMMMMS 187 Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 P +IS+P K+I FV IDGWSL+ + L+ ++ Sbjct: 188 PVTISVPVKLILFVAIDGWSLISKGLIMQYM 218 >gi|326794362|ref|YP_004312182.1| Yop virulence translocation R [Marinomonas mediterranea MMB-1] gi|326545126|gb|ADZ90346.1| Yop virulence translocation R [Marinomonas mediterranea MMB-1] Length = 217 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 71/205 (34%), Positives = 114/205 (55%), Gaps = 2/205 (0%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 LS+ PI+LI+ + F + +V I R MG+ VPPN+ I +AL T +VM+P Sbjct: 13 LFLGALSLLPIMLIVCSAFLKISMVLMITRNAMGVQQVPPNMAIYGIALAATMFVMAPVF 72 Query: 104 DRSIEMGIQ--PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161 + P ++ T+ ++ P FM N+ + MD Sbjct: 73 SDIGNKVKETPPDFSSLEGMQTSANKIVGPLQAFMSRNSNPDVTTHMMDNTARLWPKEMA 132 Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221 +K + I+IPSFM+SEL+ +IGFLI +PF++ID+IV+ +++A+GM M+ P +ISL Sbjct: 133 SKVTKDDLMIVIPSFMLSELKAGLQIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTISL 192 Query: 222 PFKVIFFVLIDGWSLLVENLVKSFI 246 P K++ FVL+DGW L++ L ++I Sbjct: 193 PLKILLFVLVDGWGRLLDGLFYTYI 217 >gi|289624375|ref|ZP_06457329.1| type III secretion system protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330868641|gb|EGH03350.1| type III secretion system protein YscR [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 218 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 59/214 (27%), Positives = 107/214 (50%), Gaps = 2/214 (0%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 ++ + + + P+ ++ +T F + +V ++R +G+ PPNLV+ +AL Sbjct: 3 GYQPNLIEIILVVATIGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIALI 62 Query: 94 MTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 ++ YV +P + G + N + P + E + F+ Sbjct: 63 LSVYVTTPLIGDMYREVQGRDLSLQNVQQLEELGSALRPPLQAHLSKFANESERGFFVQA 122 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + + +LIP+F+ SEL R+FEIGFL+ +PFL++D++V+ ++M MGM Sbjct: 123 TETIWSPEARADLRDDDLVVLIPAFVSSELTRAFEIGFLLYIPFLVVDLLVSNVLMTMGM 182 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+ PT IS+P K+ FV + GWS L+ L+ S+ Sbjct: 183 SMVSPTLISIPLKIFLFVALSGWSRLMHGLILSY 216 >gi|34498458|ref|NP_902673.1| flagellar biosynthesis protein FliP [Chromobacterium violaceum ATCC 12472] gi|34104313|gb|AAQ60672.1| flagellar biosynthetic protein fliP [Chromobacterium violaceum ATCC 12472] Length = 248 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 73/204 (35%), Positives = 124/204 (60%), Gaps = 4/204 (1%) Query: 41 RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100 + + T L + P+L++M+T F RF+IV S+LR +G+ PN +I +AL +T VM Sbjct: 45 QILILMTALGLLPVLVLMMTSFTRFVIVLSLLRQALGLQQGLPNRLITGVALILTLLVMR 104 Query: 101 PTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD 160 P + + P ++IT A++ A+P FM T + L+ ++ + Sbjct: 105 PVGLQVWNEAMVPFDQDKITMQQALEIAAKPVSRFMLAQTGKTALAQVARLSG----EEN 160 Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220 + + + + + + +F++SEL+ +F+IG ++ +PFL+ID++V++++MAMGMMML P IS Sbjct: 161 VARPEDHAFTVKLAAFVLSELKTAFQIGCMLFIPFLVIDLVVSSVLMAMGMMMLSPLVIS 220 Query: 221 LPFKVIFFVLIDGWSLLVENLVKS 244 LP K++ FVL+DGWSL V LV S Sbjct: 221 LPLKLLLFVLVDGWSLTVNTLVTS 244 >gi|53716433|ref|YP_106203.1| type III secretion system protein [Burkholderia mallei ATCC 23344] gi|53722640|ref|YP_111625.1| type III secretion system protein [Burkholderia pseudomallei K96243] gi|76819625|ref|YP_335835.1| type III secretion system protein [Burkholderia pseudomallei 1710b] gi|124381437|ref|YP_001025753.1| type III secretion system protein [Burkholderia mallei NCTC 10229] gi|126447834|ref|YP_001077838.1| type III secretion system protein [Burkholderia mallei NCTC 10247] gi|126457083|ref|YP_001076228.1| type III secretion system protein [Burkholderia pseudomallei 1106a] gi|134282115|ref|ZP_01768821.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 305] gi|167004563|ref|ZP_02270321.1| type III secretion inner membrane protein SctR [Burkholderia mallei PRL-20] gi|167724361|ref|ZP_02407597.1| type III secretion system protein [Burkholderia pseudomallei DM98] gi|167820506|ref|ZP_02452186.1| type III secretion system protein [Burkholderia pseudomallei 91] gi|167850341|ref|ZP_02475849.1| type III secretion system protein [Burkholderia pseudomallei B7210] gi|167907266|ref|ZP_02494471.1| type III secretion system protein [Burkholderia pseudomallei NCTC 13177] gi|167915628|ref|ZP_02502719.1| type III secretion system protein [Burkholderia pseudomallei 112] gi|238563924|ref|ZP_04610801.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia mallei GB8 horse 4] gi|242311808|ref|ZP_04810825.1| type III secretion inner membrane protein SctR [Burkholderia pseudomallei 1106b] gi|254176224|ref|ZP_04882882.1| type III secretion inner membrane protein SctR [Burkholderia mallei ATCC 10399] gi|254185081|ref|ZP_04891670.1| type III secretion inner membrane protein SctR [Burkholderia pseudomallei 1655] gi|254186948|ref|ZP_04893464.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei Pasteur 52237] gi|254194505|ref|ZP_04900937.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei S13] gi|254201084|ref|ZP_04907449.1| type III secretion inner membrane protein SctR [Burkholderia mallei FMH] gi|254205049|ref|ZP_04911402.1| type III secretion inner membrane protein SctR [Burkholderia mallei JHU] gi|254262389|ref|ZP_04953254.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 1710a] gi|254301371|ref|ZP_04968815.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 406e] gi|254359170|ref|ZP_04975442.1| type III secretion inner membrane protein SctR [Burkholderia mallei 2002721280] gi|52213054|emb|CAH39092.1| putative type III secretion protein [Burkholderia pseudomallei K96243] gi|52422403|gb|AAU45973.1| type III secretion inner membrane protein SctR [Burkholderia mallei ATCC 23344] gi|76584098|gb|ABA53572.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 1710b] gi|126230851|gb|ABN94264.1| type III secretion inner membrane protein SctR [Burkholderia pseudomallei 1106a] gi|126240688|gb|ABO03800.1| type III secretion inner membrane protein SctR [Burkholderia mallei NCTC 10247] gi|134246644|gb|EBA46732.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 305] gi|147748696|gb|EDK55771.1| type III secretion inner membrane protein SctR [Burkholderia mallei FMH] gi|147754635|gb|EDK61699.1| type III secretion inner membrane protein SctR [Burkholderia mallei JHU] gi|148028357|gb|EDK86317.1| type III secretion inner membrane protein SctR [Burkholderia mallei 2002721280] gi|157811552|gb|EDO88722.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 406e] gi|157934632|gb|EDO90302.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei Pasteur 52237] gi|160697266|gb|EDP87236.1| type III secretion inner membrane protein SctR [Burkholderia mallei ATCC 10399] gi|169651256|gb|EDS83949.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei S13] gi|184215673|gb|EDU12654.1| type III secretion inner membrane protein SctR [Burkholderia pseudomallei 1655] gi|238519668|gb|EEP83137.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia mallei GB8 horse 4] gi|242135047|gb|EES21450.1| type III secretion inner membrane protein SctR [Burkholderia pseudomallei 1106b] gi|243060178|gb|EES42364.1| type III secretion inner membrane protein SctR [Burkholderia mallei PRL-20] gi|254213391|gb|EET02776.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 1710a] gi|261826319|gb|ABM99126.2| type III secretion inner membrane protein SctR [Burkholderia mallei NCTC 10229] Length = 216 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 121/206 (58%), Gaps = 2/206 (0%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 ++S+ P + ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ Y+M+P Sbjct: 10 LLIAVLVMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAP 69 Query: 102 TLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 + + ++ Q T+ A EPF F+ ++RE++ F+ A Sbjct: 70 IGFAAQQQLQGQALSPQPTQAMLQAFGAAKEPFRRFLAAHSREREKRFFLRSASVIWPQA 129 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + +L P+F ++++ +F IGF++ + F+I+D+++A ++M+MGM + PT++ Sbjct: 130 AAAQLREDDLIVLAPAFTLAQMTDAFRIGFILYIAFIIVDLVIANVLMSMGMNQVQPTNV 189 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 ++PFK++ FV++DGWS LV LV ++ Sbjct: 190 AIPFKLMLFVVMDGWSTLVHGLVLTY 215 >gi|212702682|ref|ZP_03310810.1| hypothetical protein DESPIG_00710 [Desulfovibrio piger ATCC 29098] gi|212673954|gb|EEB34437.1| hypothetical protein DESPIG_00710 [Desulfovibrio piger ATCC 29098] Length = 218 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 66/196 (33%), Positives = 114/196 (58%), Gaps = 3/196 (1%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P LL+MVT + + ++V S++R +G+ VPP +V+ LA+ +T ++M+P + + + Sbjct: 22 PFLLMMVTSYVKIVVVTSLVRNALGVQQVPPAMVMNGLAIILTVFIMAPVAMDTKALLEE 81 Query: 113 PLMNNQITETTAIQ---RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169 + + ++ V+ P F+ NT L FM A Sbjct: 82 QRFSANPKPSEMLETLQAVSPPLRQFLEKNTSPAILQEFMGTAQRIWPEHQRQSITRDNL 141 Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229 IL+P+F I+EL ++F+IGFL+ LPF+ ID+I++ +++AMGMMM+ P +ISLPFK++ FV Sbjct: 142 FILVPAFTITELTKAFQIGFLLYLPFVAIDLIISNVLLAMGMMMVSPMTISLPFKLLLFV 201 Query: 230 LIDGWSLLVENLVKSF 245 +DGW + + L+ S+ Sbjct: 202 TLDGWLKISQGLLLSY 217 >gi|332526333|ref|ZP_08402460.1| type III secretion system protein YscR [Rubrivivax benzoatilyticus JA2] gi|332110470|gb|EGJ10793.1| type III secretion system protein YscR [Rubrivivax benzoatilyticus JA2] Length = 220 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 73/209 (34%), Positives = 120/209 (57%), Gaps = 6/209 (2%) Query: 43 FGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT 102 +L++AP + +MVT F + ++V S+LR +G+ VPPN+V+ +AL ++ YVM P Sbjct: 12 LITVVLLALAPFVGVMVTSFTKIVVVLSLLRNALGLQQVPPNVVLNGMALVLSIYVMYPV 71 Query: 103 LDRSIEMGIQPLMNNQIT------ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 + E Q +Q A EP F+ ++ + F++ + Sbjct: 72 GLQMAERVGQSQSQSQAAGRGTEALLAAADAAKEPLREFLIQHSNPDERRFFLETLRRNL 131 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 + +++P+F+++EL +F+IGFLI LPFL+ID++V+ I+MA+GMMML P Sbjct: 132 SPAQQQALSERDLVVVVPAFVVNELSVAFQIGFLIFLPFLVIDLVVSNILMALGMMMLSP 191 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 T++SLPFK++ FVL+DGW L LV S+ Sbjct: 192 TTVSLPFKLLLFVLVDGWVKLSHGLVLSY 220 >gi|167467561|ref|ZP_02332265.1| type III secretion system protein [Yersinia pestis FV-1] Length = 333 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 68/199 (34%), Positives = 114/199 (57%), Gaps = 3/199 (1%) Query: 41 RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100 + + +LS+ P+L++M T F + +VFS+LR +G+ VPPN+ I LAL +T ++M+ Sbjct: 29 QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA 88 Query: 101 PTLDRSIEMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 P ++N I Q P+ F++ NT + ++ F D+ + Sbjct: 89 PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE 148 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 IL+P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P + Sbjct: 149 RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT 208 Query: 219 ISLPFKVIFFVLIDGWSLL 237 +SLPFK++ FVL GW ++ Sbjct: 209 LSLPFKLLVFVL-SGWLVI 226 >gi|182440971|dbj|BAG24096.1| HrcR [Pseudomonas cichorii] Length = 193 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 60/193 (31%), Positives = 112/193 (58%), Gaps = 2/193 (1%) Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ--P 113 +I+ T F + +V I R +G+ PPN+ + +AL T ++M+P + + + Sbjct: 1 MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFNEMGQRVKKLPE 60 Query: 114 LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILI 173 ++N +A + V EP +FM N + ++ ++ + +++ Sbjct: 61 RLDNFAAMESAGKHVIEPLRLFMTRNIDPDIQTHLLENTQRMWPKEMSSQASRDDLLLVV 120 Query: 174 PSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDG 233 P+F++SEL+ F+IGFLI +PF++ID+IV+ I++A+GM M+ P +ISLP K++ FVL+DG Sbjct: 121 PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG 180 Query: 234 WSLLVENLVKSFI 246 W+ L++ L S++ Sbjct: 181 WTRLLDGLFYSYM 193 >gi|34498062|ref|NP_902277.1| type III secretion system protein [Chromobacterium violaceum ATCC 12472] gi|34332839|gb|AAQ60277.2| type III secretion system EscR protein [Chromobacterium violaceum ATCC 12472] Length = 216 Score = 158 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 68/215 (31%), Positives = 123/215 (57%), Gaps = 2/215 (0%) Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92 +S+ ++ + LSI P+L+++ T F + +VF++LR +G+ +PPN+ + LAL Sbjct: 1 MSLLDQPLQLIVLLFALSILPLLVVLGTSFLKLAVVFALLRNALGIQQIPPNIALYGLAL 60 Query: 93 FMTFYVMSPTLDRSIEMGI-QPLMNNQITETTAIQRVAE-PFWVFMRNNTREKDLSLFMD 150 +T ++M+P + I P+ ++ P+ VF+ NT + + F D Sbjct: 61 ILTLFIMAPIGLEIQDNLIAHPIKIESPAFIQQVESGVFTPYRVFLERNTAPEQVHFFAD 120 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 + H + +L+P+F +S+L +F+IG L+ LPF+ ID++V+ +++AMG Sbjct: 121 IGHQIWPEKYQQRIPDNSLLVLMPAFTVSQLIEAFKIGLLLFLPFVAIDLVVSNVLLAMG 180 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMM+ P +IS+P K++ FVL++GW L+ LV SF Sbjct: 181 MMMVSPMTISMPLKLLVFVLMNGWEKLLGQLVLSF 215 >gi|120609152|ref|YP_968830.1| type III secretion system protein [Acidovorax citrulli AAC00-1] gi|120587616|gb|ABM31056.1| Yop virulence translocation R [Acidovorax citrulli AAC00-1] gi|251825694|gb|ACT20915.1| type III secretion system structural protein [Acidovorax citrulli] gi|255047057|gb|AAW81014.2| HrcR [Acidovorax citrulli] Length = 220 Score = 158 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 55/197 (27%), Positives = 111/197 (56%), Gaps = 4/197 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI- 111 P ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ YVM+P + + Sbjct: 23 PFAAMIVTSYTKVVVVLGLLRNALGVQQVPPNMVLNGIAIIISVYVMAPVAMEASDRMQM 82 Query: 112 ---QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIE 168 +N A EPF F+ + + + F+ A + + Sbjct: 83 LPPSAQSSNTQQMLAAASAAREPFRKFLDKHADAAEKAFFLKSAQALWPEERARSLQADD 142 Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 +L P+F+++EL +F IGFL+ L F+I+++++A +++AMG+ + PT++++PFK++ F Sbjct: 143 LVVLAPAFLLTELTAAFRIGFLLYLAFIIVELVIANVLLAMGLSQVSPTNVAIPFKLLLF 202 Query: 229 VLIDGWSLLVENLVKSF 245 V++DGWS ++ LV ++ Sbjct: 203 VVLDGWSQVMHGLVMTY 219 >gi|160875390|ref|YP_001554706.1| type III secretion system protein [Shewanella baltica OS195] gi|160860912|gb|ABX49446.1| Yop virulence translocation R [Shewanella baltica OS195] gi|315267590|gb|ADT94443.1| Yop virulence translocation R [Shewanella baltica OS678] Length = 216 Score = 158 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 66/208 (31%), Positives = 111/208 (53%), Gaps = 2/208 (0%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ + LS+ P+ +M T F + IVFS+LR +G+ +PPN+ I LAL +T + M Sbjct: 8 IQLIIMLFCLSLLPLFAVMGTSFLKLAIVFSMLRNALGIQQIPPNMAIYGLALILTLFTM 67 Query: 100 SPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +P + + + P+ F+ NT + F ++ H Sbjct: 68 APVGMAINDNLKATPIVFDAPNVFEQINTEAIAPYRAFLEKNTSNTQIEFFANIGHKVWP 127 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 +++P+F +S+L +F+IG LI LPF+ ID+IV+ I++AMGMMM+ P Sbjct: 128 EKYQQVLTKDSLLVMVPAFTMSQLIEAFKIGLLIYLPFVAIDLIVSNILLAMGMMMVSPM 187 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 +I+LPFK++ F+L+ GW L+ L+ SF Sbjct: 188 TIALPFKLLIFILMGGWEKLISQLMMSF 215 >gi|292899278|ref|YP_003538647.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291199126|emb|CBJ46240.1| type III secretion system protein [Erwinia amylovora ATCC 49946] Length = 223 Score = 158 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 57/212 (26%), Positives = 115/212 (54%), Gaps = 6/212 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + + + ++ P ++ TCF +F IV ++R +G+ VP NL + ++L +T ++M Sbjct: 6 ISLIAVLSFFTLLPFIIAGGTCFIKFSIVLVMMRNALGIQQVPSNLTLNGISLILTAFIM 65 Query: 100 SPTLDRSIEMGI--QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 P R I+ N + + + + ++ + + + F + ++ Sbjct: 66 MPVCQRIIDDVETRHIDFNQSSAFSQFVNDGLDGYREYLVHYSDHDLIHFFNKVQQRNND 125 Query: 158 NTDITKNDH----IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 + +H + L+P++ +SE++ +F I F I +PF++IDM+V++I++A+GMMM Sbjct: 126 DNVANTFEHELTRLPLMTLMPAYALSEIQSAFRIAFYIYIPFVVIDMVVSSILLALGMMM 185 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 + P +IS+P K+I FV +DGWSLL + L+ + Sbjct: 186 MSPVTISIPIKLILFVAMDGWSLLTKGLIAQY 217 >gi|126174198|ref|YP_001050347.1| type III secretion system protein [Shewanella baltica OS155] gi|304408581|ref|ZP_07390202.1| Yop virulence translocation R [Shewanella baltica OS183] gi|307305409|ref|ZP_07585157.1| Yop virulence translocation R [Shewanella baltica BA175] gi|125997403|gb|ABN61478.1| Yop virulence translocation R [Shewanella baltica OS155] gi|304352402|gb|EFM16799.1| Yop virulence translocation R [Shewanella baltica OS183] gi|306911712|gb|EFN42137.1| Yop virulence translocation R [Shewanella baltica BA175] Length = 216 Score = 158 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 67/208 (32%), Positives = 111/208 (53%), Gaps = 2/208 (0%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 V+ + LS+ P+ +M T F + IVFS+LR +G+ +PPN+ I LAL +T + M Sbjct: 8 VQLIIMLFCLSLLPLFAVMGTSFLKLAIVFSMLRNALGIQQIPPNMAIYGLALILTLFTM 67 Query: 100 SPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +P + + + P+ F+ NT + F ++ H Sbjct: 68 APVGMAINDNLKATPIVFDAPNVFEQINTEAIAPYRAFLDKNTSNTQIEFFANIGHKVWP 127 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 +++P+F +S+L +F+IG LI LPF+ ID+IV+ I++AMGMMM+ P Sbjct: 128 EKYQQVLTKDSLLVMVPAFTMSQLIEAFKIGLLIYLPFVAIDLIVSNILLAMGMMMVSPM 187 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 +I+LPFK++ F+L+ GW L+ L+ SF Sbjct: 188 TIALPFKLLIFILMGGWEKLISQLMMSF 215 >gi|171319016|ref|ZP_02908143.1| Yop virulence translocation R [Burkholderia ambifaria MEX-5] gi|171095771|gb|EDT40724.1| Yop virulence translocation R [Burkholderia ambifaria MEX-5] Length = 213 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 63/204 (30%), Positives = 108/204 (52%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 + L I P ++VT + + IVF++++ +G+ P LV +LAL +T +VM+P Sbjct: 9 LLVLSMALGIVPAACVLVTSYTKISIVFALVKNAIGIQQTPSALVTNALALIVTMFVMAP 68 Query: 102 TLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161 L Q V +P FM+ + ++ + + A Sbjct: 69 VLTEVSRNMASGPSREQSRIEWVSNAVGKPVGEFMKKHVDPREQARLIASAERIWPEAMA 128 Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221 ++ IL P+F ISE+ +F+IGF++ L F+ ID+IVA I+MAMGM+M PT +S+ Sbjct: 129 KAAKPDDFFILAPAFAISEITAAFKIGFVLYLAFVAIDLIVANILMAMGMIMFSPTIVSI 188 Query: 222 PFKVIFFVLIDGWSLLVENLVKSF 245 P K++ F + DGWS L+++L+ ++ Sbjct: 189 PLKIVLFAMADGWSRLIQSLILTY 212 >gi|261344591|ref|ZP_05972235.1| type III secretion apparatus protein, YscR/HrcR family [Providencia rustigianii DSM 4541] gi|282567505|gb|EFB73040.1| type III secretion apparatus protein, YscR/HrcR family [Providencia rustigianii DSM 4541] Length = 221 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 55/208 (26%), Positives = 109/208 (52%), Gaps = 2/208 (0%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + + ++ P ++ TC+ + IV ++R MG+ VP + + +AL ++ +VM Sbjct: 8 IPLLVLIAFSTLLPFIIAAGTCYLKISIVLIMVRNAMGVQQVPSTMALNGIALLLSIFVM 67 Query: 100 SPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 P L + +N + + + ++ + + ++ F + Sbjct: 68 MPILQDVNNHMRSERVDFSNVESIDNFVDNGLGRYKDYLVKYSDPQLVTFFESVQQGKSE 127 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + L+P++ +SE++ +FEIGF I LPF++ID+++++I++A+GMMM+ P Sbjct: 128 AEVSEEQAEPTLFSLLPAYALSEIKSAFEIGFYIYLPFVVIDLVISSILLALGMMMMSPV 187 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 +IS+P K+I FV IDGWSL+ + LV + Sbjct: 188 TISVPVKLILFVAIDGWSLISKGLVMQY 215 >gi|170018891|ref|YP_001723845.1| surface presentation of antigens protein SpaP [Escherichia coli ATCC 8739] gi|169753819|gb|ACA76518.1| Yop virulence translocation R [Escherichia coli ATCC 8739] Length = 221 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 58/213 (27%), Positives = 120/213 (56%), Gaps = 4/213 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + + I ++ ++ P ++ T F +F IVF I+R +G+ VP N+ + +AL ++ Sbjct: 2 SNSISLIAILSLFTLLPFIIASGTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61 Query: 97 YVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-- 152 +VM P + NN + ++ + ++ + + ++ F + Sbjct: 62 FVMMPVGKEIYYNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVNFFEKIQKV 121 Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 +SS N +I +D+I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM Sbjct: 122 NSSEDNEEIFDDDNIPIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+ P +IS P K+I FV +DGW++L + L+ + Sbjct: 182 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214 >gi|326315333|ref|YP_004233005.1| Yop virulence translocation R [Acidovorax avenae subsp. avenae ATCC 19860] gi|89111159|dbj|BAE80249.1| HrcR [Acidovorax avenae subsp. avenae] gi|89111192|dbj|BAE80281.1| HrcR [Acidovorax avenae subsp. avenae] gi|323372169|gb|ADX44438.1| Yop virulence translocation R [Acidovorax avenae subsp. avenae ATCC 19860] Length = 220 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 55/197 (27%), Positives = 111/197 (56%), Gaps = 4/197 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI- 111 P ++VT + + ++V +LR +G+ VPPN+V+ +A+ ++ YVM+P + + Sbjct: 23 PFAAMIVTSYTKVVVVLGLLRNALGVQQVPPNMVLNGIAIIISVYVMAPVAMEASDRMQM 82 Query: 112 ---QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIE 168 +N A EPF F+ + + + F+ A + + Sbjct: 83 LPPSAQSSNTQQMLAAASAAREPFRKFLDKHADAAEKAFFLKSAQALWPEDRARSLQADD 142 Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 +L P+F+++EL +F IGFL+ L F+I+++++A +++AMG+ + PT++++PFK++ F Sbjct: 143 LVVLAPAFLLTELTAAFRIGFLLYLAFIIVELVIANVLLAMGLSQVSPTNVAIPFKLLLF 202 Query: 229 VLIDGWSLLVENLVKSF 245 V++DGWS ++ LV ++ Sbjct: 203 VVLDGWSQVMHGLVMTY 219 >gi|312172195|emb|CBX80452.1| Surface presentation of antigens protein SpaP [Erwinia amylovora ATCC BAA-2158] Length = 229 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 58/212 (27%), Positives = 117/212 (55%), Gaps = 6/212 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + + + ++ P ++ TCF +F IV ++R +G+ VP NL + ++L +T ++M Sbjct: 12 ISLIAVLSFFTLLPFIIAGGTCFIKFSIVLVMMRNALGIQQVPSNLTLNGISLILTAFIM 71 Query: 100 SPTLDRSIEMGI--QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 P R I+ N + + + + ++ + + + F + ++ Sbjct: 72 MPVCQRIIDDVETRHIDFNQSSAFSQFVNDGLDGYREYLVHYSDHDLIHFFNKVQQRNND 131 Query: 158 NTDITKNDH----IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 +T +H + L+P++ +SE++ +F+I F I +PF++IDM+V++I++A+GMMM Sbjct: 132 DTVANTFEHELTRLPLMTLMPAYALSEIQSAFKIAFYIYIPFVVIDMVVSSILLALGMMM 191 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 + P +IS+P K+I FV +DGWSLL + L+ + Sbjct: 192 MSPVTISIPIKLILFVAMDGWSLLTKGLIAQY 223 >gi|94986979|ref|YP_594912.1| type III secretion system protein [Lawsonia intracellularis PHE/MN1-00] gi|94731228|emb|CAJ54591.1| translocation protein in type III secretion [Lawsonia intracellularis PHE/MN1-00] Length = 216 Score = 158 bits (399), Expect = 7e-37, Method: Composition-based stats. Identities = 66/209 (31%), Positives = 117/209 (55%), Gaps = 3/209 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + L +AP +++MVT + + ++V S++R +G+ VPP +V+ LA+ ++ ++M Sbjct: 7 LIIILGLGALGLAPFVIMMVTSYVKIVVVTSLIRNALGVQQVPPAIVMNGLAIILSIFIM 66 Query: 100 SPTLDRSIEMGIQ---PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 +P + ++ ++ P + A+ P F+ N E + M A Sbjct: 67 APVYMKMEDLYLKTALPSSPAALEVIKALYDATPPLREFLIRNADESTIRGLMVTAKRIW 126 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 I+IP+F I+EL +SF+IGFL+ LPF+ ID++V+ I++AMGMMM+ P Sbjct: 127 PKDQHETISRNNLLIIIPAFTITELTKSFQIGFLLYLPFVAIDLVVSNILLAMGMMMVSP 186 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +ISLPFK++ FV +DGW + + L+ S+ Sbjct: 187 MTISLPFKLLLFVTLDGWLKISQGLMLSY 215 >gi|212711701|ref|ZP_03319829.1| hypothetical protein PROVALCAL_02776 [Providencia alcalifaciens DSM 30120] gi|212685803|gb|EEB45331.1| hypothetical protein PROVALCAL_02776 [Providencia alcalifaciens DSM 30120] Length = 221 Score = 158 bits (399), Expect = 8e-37, Method: Composition-based stats. Identities = 56/208 (26%), Positives = 111/208 (53%), Gaps = 2/208 (0%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + I + ++ P ++ TC+ + IV ++R MG+ VP + + +AL ++ +VM Sbjct: 8 IPLLAIIALSTLLPFIIAAGTCYLKISIVLIMVRNAMGVQQVPSTMALNGIALLLSIFVM 67 Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 P L + ++ N + + + ++ + + ++ F + Sbjct: 68 MPVLQDVNQYMRHESVDFSNVESVDNFVDNGLGRYKSYLMKYSDPQLVTFFESVQQGKTE 127 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + L+P++ +SE++ +FEIGF I LPF++ID+++++I++A+GMMM+ P Sbjct: 128 IEVQEEQAEPTLFSLLPAYALSEIKSAFEIGFYIYLPFVVIDLVISSILLALGMMMMSPV 187 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 +IS+P K+I FV IDGWSL+ + LV + Sbjct: 188 TISVPVKLILFVAIDGWSLISKGLVMQY 215 >gi|292488067|ref|YP_003530944.1| surface presentation of antigens protein SpaP [Erwinia amylovora CFBP1430] gi|291553491|emb|CBA20536.1| Surface presentation of antigens protein SpaP [Erwinia amylovora CFBP1430] Length = 229 Score = 158 bits (399), Expect = 8e-37, Method: Composition-based stats. Identities = 57/212 (26%), Positives = 115/212 (54%), Gaps = 6/212 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + + + ++ P ++ TCF +F IV ++R +G+ VP NL + ++L +T ++M Sbjct: 12 ISLIAVLSFFTLLPFIIAGGTCFIKFSIVLVMMRNALGIQQVPSNLTLNGISLILTAFIM 71 Query: 100 SPTLDRSIEMGI--QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 P R I+ N + + + + ++ + + + F + ++ Sbjct: 72 MPVCQRIIDDVETRHIDFNQSSAFSQFVNDGLDGYREYLVHYSDHDLIHFFNKVQQRNND 131 Query: 158 NTDITKNDH----IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 + +H + L+P++ +SE++ +F I F I +PF++IDM+V++I++A+GMMM Sbjct: 132 DNVANTFEHELTRLPLMTLMPAYALSEIQSAFRIAFYIYIPFVVIDMVVSSILLALGMMM 191 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 + P +IS+P K+I FV +DGWSLL + L+ + Sbjct: 192 MSPVTISIPIKLILFVAMDGWSLLTKGLIAQY 223 >gi|315281327|ref|ZP_07869975.1| flagellar biosynthetic protein FliP [Listeria marthii FSL S4-120] gi|313615025|gb|EFR88521.1| flagellar biosynthetic protein FliP [Listeria marthii FSL S4-120] Length = 219 Score = 158 bits (399), Expect = 9e-37, Method: Composition-based stats. Identities = 60/214 (28%), Positives = 117/214 (54%), Gaps = 4/214 (1%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 V F + T+LS++ +++M T F IIV + R G+G ++PPN V++ L Sbjct: 7 NGTDGVNSSVALFVLVTVLSLSASIVLMFTHFTYCIIVLGLTRQGLGATNLPPNQVLVGL 66 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 ALF++ ++M P + + +P + + + ++ NT + D+++ + Sbjct: 67 ALFLSLFMMQPLITAWYDDVYKPSQKEEWSASKVWDETQPLLTKYVAENTYKHDINMML- 125 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 + +TK + L+P+F+++++ + F G I L F+ ID+IV+T++M +G Sbjct: 126 ---KAEGEDPVTKKEDAPLMALMPAFILTQITQGFLTGMFIYLAFIFIDLIVSTLLMYLG 182 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 MMM+PP +ISLPFK++ F+ I G+ L+ + ++ Sbjct: 183 MMMVPPMTISLPFKILVFIFIGGYGLITNMIFQT 216 >gi|71735866|ref|YP_274731.1| type III secretion system protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556419|gb|AAZ35630.1| type III secretion component, putative [Pseudomonas syringae pv. phaseolicola 1448A] Length = 218 Score = 157 bits (398), Expect = 9e-37, Method: Composition-based stats. Identities = 59/214 (27%), Positives = 107/214 (50%), Gaps = 2/214 (0%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 ++ + + + P+ ++ +T F + +V ++R +G+ PPNLV+ +AL Sbjct: 3 GYQPNLIEIILVVATIGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIALI 62 Query: 94 MTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 ++ YV +P + G + N + + E + F+ Sbjct: 63 LSVYVTTPLIGDMYREVQGRDLSLQNVQQLEELGSALCPTLQAHLSKFANESERGFFVQA 122 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + + +LIP+F+ SEL R+FEIGFL+ +PFL++D++V+ ++MAMGM Sbjct: 123 TETIWSPEARADLRDDDLVVLIPAFVSSELTRAFEIGFLLYIPFLVVDLLVSNVLMAMGM 182 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+ PT IS+P K+ FV + GWS L+ L+ S+ Sbjct: 183 SMVSPTLISIPLKIFLFVALSGWSRLMHGLILSY 216 >gi|256024631|ref|ZP_05438496.1| surface presentation of antigens protein SpaP [Escherichia sp. 4_1_40B] gi|300950614|ref|ZP_07164516.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 116-1] gi|300958195|ref|ZP_07170349.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 175-1] gi|301026123|ref|ZP_07189597.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 196-1] gi|301643799|ref|ZP_07243836.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 146-1] gi|307139550|ref|ZP_07498906.1| surface presentation of antigens protein SpaP [Escherichia coli H736] gi|62085079|gb|AAX62943.1| type III secretion apparatus protein [Escherichia coli] gi|299879818|gb|EFI88029.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 196-1] gi|300315147|gb|EFJ64931.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 175-1] gi|300450094|gb|EFK13714.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 116-1] gi|301077832|gb|EFK92638.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 146-1] gi|323941617|gb|EGB37797.1| YscR/HrcR family protein type III secretion lipoprotein [Escherichia coli E482] Length = 221 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 58/213 (27%), Positives = 120/213 (56%), Gaps = 4/213 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + + I ++ ++ P ++ T F +F IVF I+R +G+ VP N+ + +AL ++ Sbjct: 2 SNSISLIAILSLFTLLPFIIASGTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61 Query: 97 YVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-- 152 +VM P + NN + ++ + ++ + + ++ F + Sbjct: 62 FVMMPVGKEIYYNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVNFFEKIQKV 121 Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 +SS N +I +D+I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM Sbjct: 122 NSSEDNEEIFDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+ P +IS P K+I FV +DGW++L + L+ + Sbjct: 182 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214 >gi|76152316|gb|ABA39817.1| HrcR [Erwinia pyrifoliae] Length = 217 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 66/205 (32%), Positives = 117/205 (57%), Gaps = 2/205 (0%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 LS+ P+L+I+ TCF + +V I R +G+ VPPN+ + +AL T +VM+P Sbjct: 13 LFLGALSLIPMLMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVF 72 Query: 104 DRSIEMGIQ--PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161 ++ + Q +++ T++ P FM +NT L + + Sbjct: 73 NQMQQQFSQVPADLSSMDNLKTSVSNGVAPLQKFMTHNTDPDILIHLQENSVRMWPKEMS 132 Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221 ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SL Sbjct: 133 DSVSKRHVLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSL 192 Query: 222 PFKVIFFVLIDGWSLLVENLVKSFI 246 P K++ FVLI+GW+ L++ L S++ Sbjct: 193 PLKMLLFVLINGWTRLLDGLFYSYL 217 >gi|330812430|ref|YP_004356892.1| type III secretion protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|312597801|gb|ADQ89916.1| RscR [Pseudomonas fluorescens] gi|327380538|gb|AEA71888.1| putative type III secretion protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 217 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 66/208 (31%), Positives = 118/208 (56%), Gaps = 4/208 (1%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 +S+ P+LLI+ + F + IV +I R +G+ VPPN+ + ++AL T ++M+P Sbjct: 11 LALFIGGISLVPLLLIICSAFLKIAIVLTITRNAIGVQQVPPNMALYAIALAATLFIMAP 70 Query: 102 TLDRSIEMGIQ---PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 E + N + + +A+ +P FM NT L+ ++ Sbjct: 71 VGHNIAEQVKERPLDFSNTEALQGSALNA-IKPLQAFMSRNTNPDILAHLLENTQRMWPK 129 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 + + +LIP+FM+SEL F++GFLI +PF++ID+IV+ +++A+GM M+ P + Sbjct: 130 ERAEQASRDDLMLLIPAFMLSELEAGFQMGFLIYIPFIVIDLIVSNLLLALGMQMVAPMT 189 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSFI 246 ISLP K++ FVL+ GW+ L+++L S++ Sbjct: 190 ISLPLKLLIFVLVQGWTQLLDSLFYSYL 217 >gi|256019339|ref|ZP_05433204.1| surface presentation of antigens protein SpaP [Shigella sp. D9] gi|332280453|ref|ZP_08392866.1| type III secretion protein EpaP [Shigella sp. D9] gi|332102805|gb|EGJ06151.1| type III secretion protein EpaP [Shigella sp. D9] Length = 220 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 60/213 (28%), Positives = 120/213 (56%), Gaps = 5/213 (2%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + + I ++ ++ P ++ TCF +F IVF I+R +G+ VP N+ + +AL ++ Sbjct: 2 SNSISLIAILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61 Query: 97 YVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-- 152 +VM P + NN + ++ + ++ + + +S F + Sbjct: 62 FVMMPVGKEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQKV 121 Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 +SS N +I +D+I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM Sbjct: 122 NSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M P +IS P K+I FV +DGW++L + L+ + Sbjct: 182 M-SPVTISTPIKLILFVAMDGWTMLSKGLILQY 213 >gi|320193801|gb|EFW68434.1| type III secretion system protein [Escherichia coli WV_060327] Length = 217 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 70/212 (33%), Positives = 126/212 (59%), Gaps = 4/212 (1%) Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92 ++I + + +F +LS+ PI +++ T F + IV IL+ +G+ VPPN+ + S++L Sbjct: 5 MTIGSQPIFLIIVFFLLSLLPIFVVVGTSFLKISIVLGILKNALGIQQVPPNMALTSVSL 64 Query: 93 FMTFYVMSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 +T ++MSP + + + Q +N + +++ P+ F+ NT + ++ F Sbjct: 65 ILTMFIMSPIILQINDNISQEQINYTDSDFFQKVDEKILSPYRGFLEKNTEKDNVEFFER 124 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 A N I K D IL+P+F + +L +F+IGFL+ LPF+ ID+I++ I++A+G Sbjct: 125 AAQKKLGNETILKKD--SLFILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALG 182 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242 MMM+ P +IS+PFK++ F+L+ GW L E L+ Sbjct: 183 MMMVSPVTISIPFKILLFILVGGWQKLFEFLL 214 >gi|238918894|ref|YP_002932408.1| type III secretion system protein [Edwardsiella ictaluri 93-146] gi|238868462|gb|ACR68173.1| type III secretion apparatus protein, YscR/HrcR family, putative [Edwardsiella ictaluri 93-146] Length = 215 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 69/214 (32%), Positives = 121/214 (56%), Gaps = 1/214 (0%) Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92 +S++ + LS+ P+L++M T F + +VF++LR +G+ +PPNL + LAL Sbjct: 1 MSLTEQPAELIALLVTLSLLPLLIVMGTSFLKLSVVFALLRNALGIQQIPPNLALYGLAL 60 Query: 93 FMTFYVMSPTLDRS-IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 +T ++M+P + P + +P+ F+R +T K L F + Sbjct: 61 ILTLFIMTPVGTAVQARLADAPAQAQTTLLSRLSDNTLDPYRQFLRQHTSAKQLKFFRQV 120 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 A S + K +L+P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGM Sbjct: 121 ATKSWPASVREKISDNSLLLLMPAFAVSQLVEAFQIGLLLFLPFIAIDLIVSNILLAMGM 180 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MM+ P +IS+PFK++ F+L+ GW ++ L+ S+ Sbjct: 181 MMVSPMTISMPFKLLVFILVGGWDKILGQLLLSY 214 >gi|238899257|ref|YP_002924940.1| type III secretion system protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229467018|gb|ACQ68792.1| type III secretion system protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 216 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 120/207 (57%), Gaps = 2/207 (0%) Query: 41 RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100 + +LSI P+L++M TCF + +VFS+LR +G+ PPN+ I LAL +T ++M+ Sbjct: 9 ELITLLFLLSIFPLLVVMGTCFLKLSVVFSLLRNALGVQQTPPNIAIYGLALVLTIFIMA 68 Query: 101 PTLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 P E ++ + +P+ F+ +NT + ++ F DM ++ Sbjct: 69 PVGLEVNESLKGEKLSQDFGTFVEQINSKALDPYRQFLLHNTSSEQINFFSDMIKNNWPK 128 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 K IL+P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P + Sbjct: 129 KYRDKVASDSLLILMPAFTVSQLIEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMMSPMT 188 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 ISLPFK++ F+L+ GW +++ L S+ Sbjct: 189 ISLPFKILIFLLVGGWDMILGQLAGSY 215 >gi|126442614|ref|YP_001061222.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei 668] gi|134280834|ref|ZP_01767544.1| FliP family [Burkholderia pseudomallei 305] gi|167725906|ref|ZP_02409142.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei DM98] gi|167905065|ref|ZP_02492270.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei NCTC 13177] gi|254182913|ref|ZP_04889506.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 1655] gi|254299708|ref|ZP_04967157.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 406e] gi|125657197|gb|ABN48685.1| FliP [Burkholderia pseudomallei] gi|126222105|gb|ABN85610.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 668] gi|134247856|gb|EBA47940.1| FliP family [Burkholderia pseudomallei 305] gi|157809347|gb|EDO86517.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 406e] gi|184213447|gb|EDU10490.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 1655] Length = 255 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 83/231 (35%), Positives = 124/231 (53%), Gaps = 7/231 (3%) Query: 14 PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73 P L + + + D S+ T + T+L + P L I++T F RF IV ++LR Sbjct: 28 PALAEPLKLPLESLGLRGDYSVKT---QILLFMTLLGLLPALAIVMTSFLRFAIVLALLR 84 Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133 +G+ P VI +AL +T VM P I+P ++IT AI R +P Sbjct: 85 QALGLQQGLPARVITGVALLLTLLVMRPVGLDVWRHAIEPYDRDEITFREAIARAEQPVS 144 Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193 FM T + L ++ D+ K + + + +FM+SEL+ +F+IG ++ L Sbjct: 145 RFMLAQTSKASLEQISRLSG----ERDVAKPEDHAFVVKAAAFMMSELKTAFQIGAMLFL 200 Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 PFLIID++VA+ +MAMGMMML P ISLP K++ FVL+DGW+L V L S Sbjct: 201 PFLIIDLVVASTLMAMGMMMLSPLVISLPLKLLLFVLVDGWTLTVNTLTTS 251 >gi|213162230|ref|ZP_03347940.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 190 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 70/190 (36%), Positives = 110/190 (57%), Gaps = 3/190 (1%) Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM-- 115 M T F + +VFSILR +G+ VPPN+ + AL ++ ++M PTL E P+ Sbjct: 1 MGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKER-WHPVQVA 59 Query: 116 NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPS 175 + + P+ F++ N+ EK+ + F ++ + K ILIP+ Sbjct: 60 GAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIPA 119 Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235 F +S+L ++F IG LI LPFL ID++++ I++AMGMMM+ P +ISLPFK++ F+L GW Sbjct: 120 FTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWD 179 Query: 236 LLVENLVKSF 245 L + LV+SF Sbjct: 180 LTLAQLVQSF 189 >gi|56414842|ref|YP_151917.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363770|ref|YP_002143407.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56129099|gb|AAV78605.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095247|emb|CAR60798.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 224 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 51/216 (23%), Positives = 115/216 (53%), Gaps = 9/216 (4%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + + ++ P ++ TCF +F IVF ++R +G+ +P N+ + +AL ++ +VM Sbjct: 5 ISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSMFVM 64 Query: 100 SPTLDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 P + + N+ + + + + + ++ + + + F + Sbjct: 65 WPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLSKYSDRELVQFFENAQLKRQY 124 Query: 158 NT-------DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 D + + L+P++ +SE++ +F+IGF + LPF+++D++V+++++A+G Sbjct: 125 GEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALG 184 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 MMM+ P +IS P K++ FV +DGW+LL + L+ ++ Sbjct: 185 MMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQYM 220 >gi|300906599|ref|ZP_07124290.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 84-1] gi|301303009|ref|ZP_07209136.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 124-1] gi|71388159|gb|AAZ31293.1| EpaP [Escherichia coli] gi|300401638|gb|EFJ85176.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 84-1] gi|300841673|gb|EFK69433.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 124-1] gi|315256734|gb|EFU36702.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli MS 85-1] Length = 221 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 60/213 (28%), Positives = 119/213 (55%), Gaps = 4/213 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + + I T+ ++ P ++ T F +F IVF I+R +G+ VP N+ + +AL ++ Sbjct: 2 SNSISLIAILTLFTLLPFIIASGTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61 Query: 97 YVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-- 152 +VM P + NN + ++ + ++ + + +S F + Sbjct: 62 FVMMPVGTEIYYNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQKV 121 Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 +SS N +I +D+I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM Sbjct: 122 NSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+ P IS P K+I FV +DGW++L + L+ + Sbjct: 182 MMSPVIISTPIKLILFVAMDGWTMLSKGLILQY 214 >gi|161502066|ref|YP_001569178.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|973278|gb|AAC43945.1| SpaP [Salmonella enterica] gi|973282|gb|AAC43948.1| SpaP [Salmonella enterica] gi|160863413|gb|ABX20036.1| hypothetical protein SARI_00083 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 224 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 51/216 (23%), Positives = 115/216 (53%), Gaps = 9/216 (4%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + + ++ P ++ TCF +F IVF ++R +G+ +P N+ + +AL ++ +VM Sbjct: 5 ISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGIALLLSMFVM 64 Query: 100 SPTLDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 P + + N+ + + + + + ++ + + + F + Sbjct: 65 WPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQFFENAQLKRQY 124 Query: 158 NT-------DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 D + + L+P++ +SE++ +F+IGF + LPF+++D++V+++++A+G Sbjct: 125 GEETEAVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALG 184 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 MMM+ P +IS P K++ FV +DGW+LL + L+ ++ Sbjct: 185 MMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQYM 220 >gi|218696459|ref|YP_002404126.1| surface presentation of antigens protein SpaP [Escherichia coli 55989] gi|218353191|emb|CAU99085.1| putative type III secretion system protein EpaP [Escherichia coli 55989] Length = 221 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 60/213 (28%), Positives = 119/213 (55%), Gaps = 4/213 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + + I T+ ++ P ++ T F +F IVF I+R +G+ VP N+ + +AL ++ Sbjct: 2 SNTISLIAILTLFTLLPFIIASGTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61 Query: 97 YVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-- 152 +VM P + NN + ++ + ++ + + +S F + Sbjct: 62 FVMMPVGTEIYYNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQKV 121 Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 +SS N +I +D+I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM Sbjct: 122 NSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+ P IS P K+I FV +DGW++L + L+ + Sbjct: 182 MMSPVIISTPIKLILFVAMDGWTMLSKGLILQY 214 >gi|74317113|ref|YP_314853.1| flagellar biosynthesis protein FliP [Thiobacillus denitrificans ATCC 25259] gi|74056608|gb|AAZ97048.1| flagellar transport protein FliP [Thiobacillus denitrificans ATCC 25259] Length = 241 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 85/245 (34%), Positives = 131/245 (53%), Gaps = 4/245 (1%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 M R L L TP L + + A + + + P LL+ T Sbjct: 1 MSRLLLLTLALSTPALGAEPTVPLLAVTPAAGGEVIGVPAASLPWLLLFPFLPALLLAFT 60 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R +V +LR G+G + PPNLV+ LA+ +T +VMSP L +P + + Sbjct: 61 AFTRIAVVLFLLRQGIGSPTAPPNLVLTGLAVLLTLFVMSPALKTINADAYEPYLAGTLA 120 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 A A P FM + TR +DL+LF++ D + + + L P+F+ SE Sbjct: 121 LDEAAAEAAAPLKRFMLHQTRAEDLALFVE----DDPTVDPRRAETVPLAALAPAFLTSE 176 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +F+IGF+++LPFL+ID++VA ++ A+GM+MLPP +SLP K++ FV +DGW LLV + Sbjct: 177 LKTAFQIGFMVVLPFLVIDLVVAAVLTALGMIMLPPQLVSLPLKLLLFVAVDGWHLLVGS 236 Query: 241 LVKSF 245 L+ SF Sbjct: 237 LIGSF 241 >gi|194426341|ref|ZP_03058896.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli B171] gi|260845712|ref|YP_003223490.1| T3SS structure protein EscR [Escherichia coli O103:H2 str. 12009] gi|260858247|ref|YP_003232138.1| T3SS structure protein EscR [Escherichia coli O26:H11 str. 11368] gi|13447701|gb|AAK26700.1|AF200363_8 EscR [Escherichia coli] gi|18034505|gb|AAL57527.1|AF453441_11 EscR [Escherichia coli] gi|17384635|emb|CAC81847.1| EscR protein [Escherichia coli] gi|57434472|emb|CAI43889.1| EscR protein [Escherichia coli] gi|189473194|gb|ACD99645.1| putative EscR [Escherichia coli] gi|194415649|gb|EDX31916.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli B171] gi|195183213|dbj|BAG66758.1| T3SS structure protein EscR [Escherichia coli O111:H-] gi|254692325|emb|CAR47966.1| EscR protein [Escherichia coli] gi|254692393|emb|CAR48036.1| EscR protein [Escherichia coli] gi|257756896|dbj|BAI28398.1| T3SS structure protein EscR [Escherichia coli O26:H11 str. 11368] gi|257760859|dbj|BAI32356.1| T3SS structure protein EscR [Escherichia coli O103:H2 str. 12009] Length = 217 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 70/212 (33%), Positives = 127/212 (59%), Gaps = 4/212 (1%) Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92 ++I + + +F +LS+ PI +++ T F + IV IL+ +G+ VPPN+ + S++L Sbjct: 5 MTIGSQPIFLIIVFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSL 64 Query: 93 FMTFYVMSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 +T ++MSP + + + Q +N + +++ P+ F+ NT ++++ F Sbjct: 65 ILTMFIMSPIILQINDNISQEPINYTDSDFFQKVDEKILSPYRGFLEKNTEKENVEFFER 124 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 A N I K D IL+P+F + +L +F+IGFL+ LPF+ ID+I++ I++A+G Sbjct: 125 AAQKKLGNETILKKD--SLFILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALG 182 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242 MMM+ P +IS+PFK++ F+L+ GW L E L+ Sbjct: 183 MMMVSPVTISIPFKILLFILVGGWQKLFEFLL 214 >gi|167550261|ref|ZP_02344018.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168463975|ref|ZP_02697892.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|238909657|ref|ZP_04653494.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|195633254|gb|EDX51668.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205324695|gb|EDZ12534.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 224 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 51/216 (23%), Positives = 115/216 (53%), Gaps = 9/216 (4%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + + ++ P ++ TCF +F IVF ++R +G+ +P N+ + +AL ++ +VM Sbjct: 5 ISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSMFVM 64 Query: 100 SPTLDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 P + + N+ + + + + + ++ + + + F + Sbjct: 65 WPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQFFENAQLKRQY 124 Query: 158 NTDIT-------KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 D + + L+P++ +SE++ +F+IGF + LPF+++D++V+++++A+G Sbjct: 125 GEDTETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALG 184 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 MMM+ P +IS P K++ FV +DGW+LL + L+ ++ Sbjct: 185 MMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQYM 220 >gi|15804244|ref|NP_290283.1| type III secretion system protein [Escherichia coli O157:H7 EDL933] gi|168748640|ref|ZP_02773662.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC4113] gi|168753533|ref|ZP_02778540.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC4401] gi|168759830|ref|ZP_02784837.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC4501] gi|168766130|ref|ZP_02791137.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC4486] gi|168772321|ref|ZP_02797328.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC4196] gi|168779865|ref|ZP_02804872.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC4076] gi|168785598|ref|ZP_02810605.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC869] gi|168798679|ref|ZP_02823686.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC508] gi|193069204|ref|ZP_03050161.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli E110019] gi|195936266|ref|ZP_03081648.1| type III secretion system protein [Escherichia coli O157:H7 str. EC4024] gi|208806674|ref|ZP_03249011.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC4206] gi|208812050|ref|ZP_03253379.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC4045] gi|208819434|ref|ZP_03259754.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC4042] gi|209398112|ref|YP_002273179.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC4115] gi|215488994|ref|YP_002331425.1| type III secretion system protein [Escherichia coli O127:H6 str. E2348/69] gi|217324318|ref|ZP_03440402.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. TW14588] gi|254795658|ref|YP_003080495.1| type III secretion system protein [Escherichia coli O157:H7 str. TW14359] gi|260869701|ref|YP_003236103.1| T3SS structure protein EscR [Escherichia coli O111:H- str. 11128] gi|261225802|ref|ZP_05940083.1| LEE-encoded type III secretion system factor [Escherichia coli O157:H7 str. FRIK2000] gi|261258847|ref|ZP_05951380.1| T3SS structure protein EscR [Escherichia coli O157:H7 str. FRIK966] gi|291285071|ref|YP_003501889.1| Type III secretion system EscR protein [Escherichia coli O55:H7 str. CB9615] gi|312967934|ref|ZP_07782146.1| conserved hypothetical protein [Escherichia coli 2362-75] gi|12518477|gb|AAG58847.1|AE005597_5 escR [Escherichia coli O157:H7 str. EDL933] gi|3414917|gb|AAC31528.1| L0049 [Escherichia coli] gi|54311600|emb|CAG17515.1| EscR protein [Escherichia coli] gi|187771664|gb|EDU35508.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC4196] gi|188016994|gb|EDU55116.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC4113] gi|189002477|gb|EDU71463.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC4076] gi|189358993|gb|EDU77412.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC4401] gi|189364379|gb|EDU82798.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC4486] gi|189369636|gb|EDU88052.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC4501] gi|189374319|gb|EDU92735.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC869] gi|189378860|gb|EDU97276.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC508] gi|192957528|gb|EDV87974.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli E110019] gi|195957534|gb|ACG59645.1| type III secretion system protein EscR [Escherichia coli O157:H7] gi|195957593|gb|ACG59703.1| type III secretion system protein EscR [Escherichia coli] gi|195957650|gb|ACG59759.1| type III secretion system protein EscR [Escherichia coli] gi|208726475|gb|EDZ76076.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC4206] gi|208733327|gb|EDZ82014.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC4045] gi|208739557|gb|EDZ87239.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC4042] gi|209159512|gb|ACI36945.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. EC4115] gi|215267066|emb|CAS11511.1| T3SS structure protein EscR [Escherichia coli O127:H6 str. E2348/69] gi|217320539|gb|EEC28963.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli O157:H7 str. TW14588] gi|221361440|emb|CAX18593.1| Type III secretion system, LEE associated [Escherichia coli] gi|221361497|emb|CAX18668.1| Type III secretion system, LEE associated [Escherichia coli] gi|221361558|emb|CAX18748.1| Type III secretion system, LEE associated [Escherichia coli] gi|254595058|gb|ACT74419.1| LEE-encoded type III secretion system factor [Escherichia coli O157:H7 str. TW14359] gi|255348331|gb|ACU09473.1| type III secretion system protein EscR [Escherichia coli] gi|257766057|dbj|BAI37552.1| T3SS structure protein EscR [Escherichia coli O111:H- str. 11128] gi|290764944|gb|ADD58905.1| Type III secretion system EscR protein [Escherichia coli O55:H7 str. CB9615] gi|312287495|gb|EFR15403.1| conserved hypothetical protein [Escherichia coli 2362-75] gi|320639373|gb|EFX08988.1| type III secretion system protein YscR [Escherichia coli O157:H7 str. G5101] gi|320644817|gb|EFX13853.1| type III secretion system protein YscR [Escherichia coli O157:H- str. 493-89] gi|320650081|gb|EFX18577.1| type III secretion system protein YscR [Escherichia coli O157:H- str. H 2687] gi|320655428|gb|EFX23363.1| type III secretion system protein YscR [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661054|gb|EFX28490.1| type III secretion system protein YscR [Escherichia coli O55:H7 str. USDA 5905] gi|320666180|gb|EFX33186.1| type III secretion system protein YscR [Escherichia coli O157:H7 str. LSU-61] Length = 217 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 70/212 (33%), Positives = 126/212 (59%), Gaps = 4/212 (1%) Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92 ++I + + +F +LS+ PI +++ T F + IV IL+ +G+ VPPN+ + S++L Sbjct: 5 MTIGSQPIFLIIVFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSL 64 Query: 93 FMTFYVMSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 +T ++MSP + + + Q +N + +++ P+ F+ NT + ++ F Sbjct: 65 ILTMFIMSPIILQINDNISQEPINYTDSDFFQKVDEKILSPYRGFLEKNTEKDNVEFFER 124 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 A N I K D IL+P+F + +L +F+IGFL+ LPF+ ID+I++ I++A+G Sbjct: 125 AAQKKLGNETILKKD--SLFILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALG 182 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242 MMM+ P +IS+PFK++ F+L+ GW L E L+ Sbjct: 183 MMMVSPVTISIPFKILLFILVGGWQKLFEFLL 214 >gi|16766196|ref|NP_461811.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62181392|ref|YP_217809.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161615802|ref|YP_001589767.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167993125|ref|ZP_02574220.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168230960|ref|ZP_02656018.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168235930|ref|ZP_02660988.1| type III secretion apparatus protein, YscR/HrcR family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168242627|ref|ZP_02667559.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261987|ref|ZP_02683960.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168820413|ref|ZP_02832413.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194445004|ref|YP_002042131.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448886|ref|YP_002046850.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194468694|ref|ZP_03074678.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194737581|ref|YP_002115842.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248290|ref|YP_002147787.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263760|ref|ZP_03163834.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198245023|ref|YP_002216859.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387886|ref|ZP_03214498.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928065|ref|ZP_03219265.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353833|ref|YP_002227634.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858152|ref|YP_002244803.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224584668|ref|YP_002638466.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|730796|sp|P40700|SPAP_SALTY RecName: Full=Surface presentation of antigens protein spaP gi|7448018|pir||T11207 spaP protein - Salmonella dublin gi|404291|emb|CAA51925.1| surface presentation of antigens [Salmonella enterica subsp. enterica serovar Typhimurium] gi|973258|gb|AAC43936.1| SpaP [Salmonella enterica subsp. enterica serovar Dublin] gi|973262|gb|AAC43966.1| SpaP [Salmonella enterica subsp. enterica serovar Senftenberg] gi|973266|gb|AAC43963.1| SpaP [Salmonella enterica subsp. enterica serovar Gallinarum] gi|973270|gb|AAC43939.1| SpaP [Salmonella enterica] gi|973274|gb|AAC43942.1| SpaP [Salmonella enterica] gi|973286|gb|AAC43951.1| SpaP [Salmonella enterica] gi|973290|gb|AAC43954.1| SpaP [Salmonella enterica] gi|973294|gb|AAC43957.1| SpaP [Salmonella enterica] gi|975763|gb|AAC43852.1| SpaP [Salmonella enterica] gi|975767|gb|AAC43858.1| SpaP [Salmonella enterica subsp. enterica serovar Typhisuis] gi|975775|gb|AAC43864.1| SpaP [Salmonella enterica subsp. enterica serovar Typhimurium] gi|975779|gb|AAC43855.1| SpaP [Salmonella enterica subsp. enterica serovar Enteritidis] gi|16421438|gb|AAL21770.1| surface presentation of antigens [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62129025|gb|AAX66728.1| surface presentation of antigens; secretory proteins [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161365166|gb|ABX68934.1| hypothetical protein SPAB_03593 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403667|gb|ACF63889.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407190|gb|ACF67409.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455058|gb|EDX43897.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194713083|gb|ACF92304.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197211993|gb|ACH49390.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197242015|gb|EDY24635.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197290886|gb|EDY30240.1| type III secretion apparatus protein, YscR/HrcR family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197939539|gb|ACH76872.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199604984|gb|EDZ03529.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204322387|gb|EDZ07584.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273614|emb|CAR38601.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205328735|gb|EDZ15499.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334464|gb|EDZ21228.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205338099|gb|EDZ24863.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205342860|gb|EDZ29624.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349049|gb|EDZ35680.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709955|emb|CAR34309.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|218988950|gb|ACL13613.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. salamae serovar Sofia] gi|224469195|gb|ACN47025.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261248026|emb|CBG25859.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995018|gb|ACY89903.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159449|emb|CBW18967.1| type III secretion system secretory apparatus [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913908|dbj|BAJ37882.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087295|emb|CBY97060.1| Surface presentation of antigens protein spaP [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223439|gb|EFX48505.1| Surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322614292|gb|EFY11223.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621644|gb|EFY18497.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624505|gb|EFY21338.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628836|gb|EFY25619.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633437|gb|EFY30179.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635987|gb|EFY32695.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639695|gb|EFY36380.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646878|gb|EFY43381.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650646|gb|EFY47051.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654741|gb|EFY51060.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658962|gb|EFY55215.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664471|gb|EFY60665.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668280|gb|EFY64437.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673740|gb|EFY69841.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677801|gb|EFY73864.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681369|gb|EFY77401.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322683771|gb|EFY79781.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715876|gb|EFZ07447.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323131242|gb|ADX18672.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323193840|gb|EFZ79043.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200310|gb|EFZ85392.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203187|gb|EFZ88216.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205566|gb|EFZ90531.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210077|gb|EFZ94980.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216380|gb|EGA01107.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221127|gb|EGA05558.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226949|gb|EGA11131.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230767|gb|EGA14885.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234882|gb|EGA18968.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238921|gb|EGA22971.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241621|gb|EGA25652.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248232|gb|EGA32168.1| type III secretion system protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251184|gb|EGA35057.1| type III secretion system protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256068|gb|EGA39806.1| type III secretion system protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263203|gb|EGA46741.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264294|gb|EGA47800.1| type III secretion system protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271120|gb|EGA54548.1| type III secretion system protein SpaP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624621|gb|EGE30966.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628942|gb|EGE35285.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332989762|gb|AEF08745.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 224 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 51/216 (23%), Positives = 115/216 (53%), Gaps = 9/216 (4%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + + ++ P ++ TCF +F IVF ++R +G+ +P N+ + +AL ++ +VM Sbjct: 5 ISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSMFVM 64 Query: 100 SPTLDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 P + + N+ + + + + + ++ + + + F + Sbjct: 65 WPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQFFENAQLKRQY 124 Query: 158 NT-------DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 D + + L+P++ +SE++ +F+IGF + LPF+++D++V+++++A+G Sbjct: 125 GEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALG 184 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 MMM+ P +IS P K++ FV +DGW+LL + L+ ++ Sbjct: 185 MMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQYM 220 >gi|973298|gb|AAC43960.1| SpaP [Salmonella enterica] gi|975743|gb|AAC43837.1| SpaP [Salmonella enterica] gi|975747|gb|AAC43840.1| SpaP [Salmonella enterica] gi|975751|gb|AAC43843.1| SpaP [Salmonella enterica] Length = 224 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 51/216 (23%), Positives = 115/216 (53%), Gaps = 9/216 (4%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + + ++ P ++ TCF +F IVF ++R +G+ +P N+ + +AL ++ +VM Sbjct: 5 ISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSMFVM 64 Query: 100 SPTLDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 P + + N+ + + + + + ++ + + + F + Sbjct: 65 WPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQFFENAQLKRQY 124 Query: 158 NT-------DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 D + + L+P++ +SE++ +F+IGF + LPF+++D++V+++++A+G Sbjct: 125 GEETEAVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALG 184 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 MMM+ P +IS P K++ FV +DGW+LL + L+ ++ Sbjct: 185 MMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQYM 220 >gi|123443727|ref|YP_001007698.1| surface presentation of antigens protein SpaP [Yersinia enterocolitica subsp. enterocolitica 8081] gi|15088594|gb|AAK84105.1|AF369954_3 YsaR [Yersinia enterocolitica] gi|122090688|emb|CAL13564.1| type III secretion apparatus protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 224 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 59/211 (27%), Positives = 113/211 (53%), Gaps = 4/211 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + I S+ P ++ TC+ + IV ++R MG+ VP L + +AL ++ +VM Sbjct: 9 IPLLAIVAFSSLLPFVIAAGTCYLKISIVLIMVRNAMGVQQVPSGLALNGIALLLSLFVM 68 Query: 100 SPTLDRSIEMG--IQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 P + + +N + I + +++ + + L+ F + Sbjct: 69 MPVIQDVNHYMRTEKVDFSNVDSVDKFIDGGLGSYTAYLKKYSDPELLNFFESLQQGRSE 128 Query: 158 NTDITKND--HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215 + + D L+P++ +SE++ +FEIGF I LPF++ID+I+++I++A+GMMM+ Sbjct: 129 EESMAEADTREPALFSLLPAYALSEIKSAFEIGFYIYLPFVVIDLIISSILLALGMMMMS 188 Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 P +IS+P K+I FV IDGW+L+ + L+ ++ Sbjct: 189 PVTISVPVKLILFVAIDGWALISKGLIMQYM 219 >gi|296162490|ref|ZP_06845281.1| Yop virulence translocation R [Burkholderia sp. Ch1-1] gi|295887303|gb|EFG67130.1| Yop virulence translocation R [Burkholderia sp. Ch1-1] Length = 211 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 118/207 (57%), Gaps = 4/207 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++T +F +L + P+ + M T F +F IV ++LR+ +G+ P NLVI LAL T VM Sbjct: 8 LQTISLFFMLGLMPLAVAMTTSFTKFSIVLTLLRSALGVQQAPSNLVISGLALAATLVVM 67 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +PT+ + E + T +Q V P FM ++R + + A Sbjct: 68 APTISKI-EAALDNGDGAMPRATELLQAVRGPLGDFMLKHSRADERQFLVGAAKRIDPER 126 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + D ++LIP+F+ISE+ FE GFL+ + FL++D++VA ++ AMGMMML P+++ Sbjct: 127 EARETD---MQLLIPAFLISEISSGFEAGFLLYIAFLVVDLVVANVLSAMGMMMLSPSTV 183 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246 S+P K+ FV + G S L+ L+ S++ Sbjct: 184 SIPLKLFIFVSVSGMSKLMHGLIVSYV 210 >gi|269138236|ref|YP_003294936.1| type three secretion apparatus protein R [Edwardsiella tarda EIB202] gi|61743015|gb|AAX55235.1| EsaR [Edwardsiella tarda] gi|62199649|gb|AAX76923.1| EsaR [Edwardsiella tarda] gi|267983896|gb|ACY83725.1| type three secretion apparatus protein R [Edwardsiella tarda EIB202] gi|304558279|gb|ADM40943.1| EsaR [Edwardsiella tarda FL6-60] Length = 215 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 67/214 (31%), Positives = 119/214 (55%), Gaps = 1/214 (0%) Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92 +S++ + LS+ P+L++M T F + +VF++LR +G+ +PPN+ + LAL Sbjct: 1 MSLTEQPAELIALLVTLSLLPLLIVMGTSFLKLSVVFALLRNALGIQQIPPNIALYGLAL 60 Query: 93 FMTFYVMSPTLDRS-IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 +T ++M+P + P +P+ F+R +T L F + Sbjct: 61 ILTLFIMTPVGTAVQARLADAPAEAQTTLLARLSDNTLDPYRQFLRQHTSATQLHFFRQV 120 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 A S + + +L+P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AMGM Sbjct: 121 ATKSWPASVREQISDDSLLLLMPAFAVSQLVEAFQIGLLLFLPFIAIDLIVSNILLAMGM 180 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MM+ P +IS+PFK++ F+L+ GW L+ L+ S+ Sbjct: 181 MMVSPMTISMPFKLLVFILVGGWDKLLGQLLLSY 214 >gi|85060062|ref|YP_455764.1| surface presentation of antigens protein SpaP [Sodalis glossinidius str. 'morsitans'] gi|45504775|gb|AAS66865.1| SpaP [Sodalis glossinidius] gi|84780582|dbj|BAE75359.1| type III secretion apparatus SpaP [Sodalis glossinidius str. 'morsitans'] Length = 233 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 54/208 (25%), Positives = 114/208 (54%), Gaps = 3/208 (1%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 GI + ++ P ++ TC+ +F IVF ++R +G+ VP NL + +AL + ++M P Sbjct: 13 LIGILALATLLPFIIASGTCYIKFSIVFVMVRNALGLQQVPSNLTLNGIALMLAMFIMGP 72 Query: 102 TLDRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 + + + + + ++ E + +++ + F Sbjct: 73 IAGDAYNAYQEQPVALGSAASVLEFLENSMESYRHYLQKYADPRLTEFFDRAHGGGGAAH 132 Query: 160 DITKNDHIE-YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 D + H L+P++ +SE++ SF IGF + LPF+++D++++++++A+GMMM+ P + Sbjct: 133 DAPASGHAPSMLALLPAYALSEIKDSFRIGFYLYLPFVVVDLLISSVLLALGMMMMSPIT 192 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +S+P K++ FV++DGW+LL + LV ++ Sbjct: 193 LSVPIKLVLFVMLDGWTLLSQGLVLQYL 220 >gi|323388136|gb|ADX60332.1| type III secretion protein RscR [Pseudomonas fluorescens] Length = 217 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 66/209 (31%), Positives = 118/209 (56%), Gaps = 2/209 (0%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + LS+ P+LLI+ T F + +IV I R +G+ VPP++ I +AL T ++M Sbjct: 9 LVLALFLGSLSLMPMLLIICTSFLKIVIVLMITRNAIGVQQVPPSMAINGIALAATLFIM 68 Query: 100 SPTLDRSIEMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +P + E ++ ++ Q +P FM NT L+ ++ + Sbjct: 69 APVGYQIAENVKASPVDTSSVQSLLETGQAAIQPLRAFMLRNTDADVLTHLLENSARMWP 128 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + +L+P+F++S+L+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P Sbjct: 129 PEMAQSTQREDLILLVPAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPM 188 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +ISLP K++ FV++ GWS L+++L S++ Sbjct: 189 TISLPLKLLLFVMVSGWSRLLDSLFLSYL 217 >gi|222082189|ref|YP_002541554.1| type III secretion system protein [Agrobacterium radiobacter K84] gi|221726868|gb|ACM29957.1| type III secretion apparatus protein, YscR/HrcR family [Agrobacterium radiobacter K84] Length = 218 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 118/207 (57%), Gaps = 2/207 (0%) Query: 41 RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100 + +SI P++ ++ T F + +V I+R +G+ PPNL++ ++A+ ++ +VM+ Sbjct: 10 QGLAAMAAISILPVIAVVATSFTKIAVVLLIVRNAIGIQQTPPNLLVFAIAIVLSAFVMN 69 Query: 101 PTLDRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 P L + ++ ++ + + V P FM + E+ F++ + + Sbjct: 70 PILQQCWQVLLRADVHFDTINGLAAGLSEVGAPLKAFMMKFSDEEVRQFFVNSSQRIWGD 129 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 T + +L PSF++SEL R+FEIGFL+ LPFL+ID V+ I++A+GM M+ PT Sbjct: 130 TATLPASPDDITVLTPSFLVSELTRAFEIGFLLYLPFLMIDFAVSAILVALGMQMMSPTV 189 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 +S PFK++ FV +DGW L+E LV S+ Sbjct: 190 VSTPFKLLLFVGVDGWRRLLEGLVLSY 216 >gi|83718329|ref|YP_439033.1| surface presentation of antigens protein SpaP [Burkholderia thailandensis E264] gi|167577439|ref|ZP_02370313.1| surface presentation of antigens protein SpaP [Burkholderia thailandensis TXDOH] gi|167615590|ref|ZP_02384225.1| surface presentation of antigens protein SpaP [Burkholderia thailandensis Bt4] gi|257142141|ref|ZP_05590403.1| surface presentation of antigens protein SpaP [Burkholderia thailandensis E264] gi|83652154|gb|ABC36218.1| type III secretion system protein BsaW [Burkholderia thailandensis E264] Length = 230 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 56/221 (25%), Positives = 115/221 (52%), Gaps = 14/221 (6%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + + T ++ P ++ +CF +F IV ++R +G+ VP NL + S+AL M+ +VM Sbjct: 6 IALIVLLTAATLVPFVVAAGSCFIKFSIVLVLVRNALGIQQVPSNLALNSIALIMSLFVM 65 Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 P + ++ N + I + ++ + + + F + + Sbjct: 66 MPVAQSAYRYLQHHPLDVMNGSSVNDFIDGGLGDYKRYLTRYSDPELVRFFERAQAARLK 125 Query: 158 NT------------DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205 D L+P++ ++E++ +F+IGF + LPFL++DM+V+++ Sbjct: 126 RDDADAADADADAGDEPDGLDNSLFSLLPAYALTEIKSAFKIGFYLYLPFLVVDMVVSSV 185 Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 ++A+GMMM+ P +IS+P K+I FV +DGW+L+ + L++ ++ Sbjct: 186 LLALGMMMMSPVTISVPIKLILFVAMDGWTLICKGLIEQYL 226 >gi|15833837|ref|NP_312610.1| type III secretion system protein [Escherichia coli O157:H7 str. Sakai] gi|13364058|dbj|BAB38006.1| type III secretion system EscR protein [Escherichia coli O157:H7 str. Sakai] Length = 217 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 70/212 (33%), Positives = 125/212 (58%), Gaps = 4/212 (1%) Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92 ++I + + +F +LS+ PI + + T F + IV IL+ +G+ VPPN+ + S++L Sbjct: 5 MTIGSQPIFLIIVFFLLSLLPIFVGIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSL 64 Query: 93 FMTFYVMSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 +T ++MSP + + + Q +N + +++ P+ F+ NT + ++ F Sbjct: 65 ILTMFIMSPIILQINDNISQEPINYTDSDFFQKVDEKILSPYRGFLEKNTEKDNVEFFER 124 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 A N I K D IL+P+F + +L +F+IGFL+ LPF+ ID+I++ I++A+G Sbjct: 125 AAQKKLGNETILKKD--SLFILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALG 182 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242 MMM+ P +IS+PFK++ F+L+ GW L E L+ Sbjct: 183 MMMVSPVTISIPFKILLFILVGGWQKLFEFLL 214 >gi|238898597|ref|YP_002924278.1| type III surface presentation of antigens protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|75906094|gb|ABA29437.1| putative type III secretion system protein [Candidatus Hamiltonella defensa] gi|229466356|gb|ACQ68130.1| type III surface presentation of antigens protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 221 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 57/211 (27%), Positives = 118/211 (55%), Gaps = 5/211 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + I ++ P ++ TC+ +F IVF ++R +G+ +P N+ + +AL + +VM Sbjct: 5 ISLISILAFSTLLPFVIASGTCYIKFSIVFVMVRNALGLQQIPSNMTLNGVALLLASFVM 64 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL--FMDMAHSSHR 157 P + E G + + ++ I+ V + + D L F + A S + Sbjct: 65 MPIVKNIYE-GHKNAQFDVRNLSSVIEFVENGLDGYRSYLVKYADPELTQFFEKAASDRK 123 Query: 158 NTDITKNDH--IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215 D + L+P++ +SE++ +F+IGF I LPF+++D+++++I++A+GMMM+ Sbjct: 124 EEDFAGAEEEKPSIFALLPAYALSEIKSAFKIGFYIYLPFVVVDLLISSILLALGMMMMS 183 Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 P +IS+P K++ FV++DGW+L+ + ++ ++ Sbjct: 184 PVTISVPIKLVLFVVLDGWTLISKGMILQYM 214 >gi|329902179|ref|ZP_08273068.1| type III secretion protein HrcR [Oxalobacteraceae bacterium IMCC9480] gi|327548850|gb|EGF33479.1| type III secretion protein HrcR [Oxalobacteraceae bacterium IMCC9480] Length = 217 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 60/215 (27%), Positives = 113/215 (52%), Gaps = 2/215 (0%) Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92 + IV + +L++ P++++ T F + +V + R +G+ VPP L I +AL Sbjct: 2 GAGKFDIVSFSILLAMLALVPLIVVTTTSFLKIALVMLVTRNALGVQQVPPTLAIYGIAL 61 Query: 93 FMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA--EPFWVFMRNNTREKDLSLFMD 150 +T +VMSPT+ T+ EP FM + + + +F+ Sbjct: 62 SLTLFVMSPTVQEIGNHVAAMEAEQTTTKRGVADAQIAFEPLRTFMLKHCKPEQREIFLA 121 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 A + + +L+P+F++SEL+ +E+ FLI +PF++ID++V+ ++MA+G Sbjct: 122 SAKKLWPKEFAAEAKSTDVLVLVPAFVVSELQTGYEVAFLIYIPFVVIDLLVSNLLMALG 181 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M + P +I++P K++ FV++DGW L+ L S+ Sbjct: 182 MQQVSPQTITVPLKLLLFVMVDGWGKLLNALAMSY 216 >gi|975755|gb|AAC43846.1| SpaP [Salmonella enterica] gi|975759|gb|AAC43849.1| SpaP [Salmonella enterica] Length = 224 Score = 155 bits (391), Expect = 7e-36, Method: Composition-based stats. Identities = 51/216 (23%), Positives = 114/216 (52%), Gaps = 9/216 (4%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + + ++ P ++ TCF +F IVF ++R +G+ +P N+ + +AL ++ +VM Sbjct: 5 ISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSMFVM 64 Query: 100 SPTLDRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 P + + N+ + + + + + ++ + + + F Sbjct: 65 WPIMHDAYVYFEDEGVSFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQFFESAQLKRQY 124 Query: 158 NT-------DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 D + + L+P++ +SE++ +F+IGF + LPF+++D++V+++++A+G Sbjct: 125 GEETETVKRDKEEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALG 184 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 MMM+ P +IS P K++ FV +DGW+LL + L+ ++ Sbjct: 185 MMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQYM 220 >gi|309703222|emb|CBJ02557.1| type III secretion system protein [Escherichia coli ETEC H10407] Length = 221 Score = 155 bits (391), Expect = 7e-36, Method: Composition-based stats. Identities = 58/213 (27%), Positives = 119/213 (55%), Gaps = 4/213 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + + I ++ ++ P ++ T F +F IVF I+R +G+ VP N+ + +AL ++ Sbjct: 2 SNSISLIAILSLFTLLPFIIASGTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61 Query: 97 YVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-- 152 +VM P + NN + ++ + ++ + + ++ F + Sbjct: 62 FVMMPVGKEIYYNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVNFFEKIQKV 121 Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 +SS N I +D+I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM Sbjct: 122 NSSEDNEVIFDDDNISIISLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+ P +IS P K+I FV +DGW++L + L+ + Sbjct: 182 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214 >gi|254469150|ref|ZP_05082555.1| type III secretion apparatus protein, YscR/HrcR family [Pseudovibrio sp. JE062] gi|211960985|gb|EEA96180.1| type III secretion apparatus protein, YscR/HrcR family [Pseudovibrio sp. JE062] Length = 214 Score = 155 bits (391), Expect = 7e-36, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 116/207 (56%), Gaps = 2/207 (0%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 ++++ P L I+ T F + +V ++R +G+ +PPN+ + +LA+ ++ Y+M P Sbjct: 8 LILALVVVALVPFLAIVATSFIKLSVVLLLVRNALGVQQIPPNMALNALAIILSGYIMLP 67 Query: 102 TLDRSIEMGIQ--PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 ++ E+ + + T P F+ + K+ + F++ + Sbjct: 68 VFLQTFEILEKGNYSIATVEDMKTTFVAAKGPLEKFLAKHADSKEKAFFLEASRQLWPAE 127 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 IL+P++ +S+LR +FEIGFL+ LPFL ID++V+ I++AMGMMM+ P +I Sbjct: 128 VADSMSADSIAILLPAYTVSQLREAFEIGFLLYLPFLAIDLVVSNILLAMGMMMVSPLTI 187 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246 SLPFK+ FV +DGWS L+ L+K+++ Sbjct: 188 SLPFKLFLFVAVDGWSRLILGLIKTYV 214 >gi|157162320|ref|YP_001459638.1| surface presentation of antigens protein SpaP [Escherichia coli HS] gi|157068000|gb|ABV07255.1| type III secretion apparatus protein EpaP [Escherichia coli HS] Length = 221 Score = 154 bits (390), Expect = 9e-36, Method: Composition-based stats. Identities = 58/213 (27%), Positives = 119/213 (55%), Gaps = 4/213 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + + I ++ ++ P ++ T F +F IVF I+R +G+ VP N+ + +AL ++ Sbjct: 2 SNSISLIAILSLFTLLPFIIASGTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61 Query: 97 YVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-- 152 +VM P + NN + ++ + ++ + + ++ F + Sbjct: 62 FVMMPVGKEIYYNSQNENLSFNNLASVVNFVETGMSGYKSYLIKYSEPELVNFFEKIQKV 121 Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 +SS N +I +D+I L+P++ +SE++ +F IGF I LPF+++D++++ +++ +GMM Sbjct: 122 NSSEDNEEIFDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISIVLLTLGMM 181 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+ P +IS P K+I FV +DGW++L + L+ + Sbjct: 182 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214 >gi|167567196|ref|ZP_02360112.1| flagellar biosynthesis protein FliP [Burkholderia oklahomensis EO147] gi|167574620|ref|ZP_02367494.1| flagellar biosynthesis protein FliP [Burkholderia oklahomensis C6786] Length = 249 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 80/220 (36%), Positives = 125/220 (56%), Gaps = 7/220 (3%) Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84 + + +P+D S+ T + T+L + P+L I+ T F RF+IV ++LR +G+ P Sbjct: 33 ESLGLPSDYSVKT---QILLFMTLLGLLPMLAIVTTSFLRFVIVLALLRQALGLQQGLPT 89 Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144 V+ +AL +T VM P I+P ++IT A+ R P FM T + Sbjct: 90 RVVAGVALLLTLLVMRPVGLDVWRNAIEPYDLDKITFREAVDRAQLPLSRFMLAQTNKAS 149 Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204 L +A D+ + + + + +FM+SEL+ +F+IG ++ LPFLIID++VA+ Sbjct: 150 LEQIARLAGEK----DLARPEDHAFVVKAAAFMLSELKTAFQIGSMLFLPFLIIDLVVAS 205 Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 +MAMGMMML P ISLP K++ FVL+DGW+L V+ L S Sbjct: 206 TLMAMGMMMLSPLVISLPLKLLLFVLVDGWTLTVDTLATS 245 >gi|16761667|ref|NP_457284.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143151|ref|NP_806493.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052434|ref|ZP_03345312.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425708|ref|ZP_03358458.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580302|ref|ZP_03362128.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213609304|ref|ZP_03369130.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213649910|ref|ZP_03379963.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213853010|ref|ZP_03382542.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289810466|ref|ZP_06541095.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289829392|ref|ZP_06547004.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|2494565|sp|Q56023|SPAP_SALTI RecName: Full=Surface presentation of antigens protein spaP gi|25316657|pir||AF0851 secretory protein (associated with virulence) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|975771|gb|AAC43861.1| SpaP [Salmonella enterica subsp. enterica serovar Typhi] gi|16503968|emb|CAD05997.1| secretory protein (associated with virulence) [Salmonella enterica subsp. enterica serovar Typhi] gi|29138784|gb|AAO70353.1| virulence-associated secretory protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 224 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 52/216 (24%), Positives = 116/216 (53%), Gaps = 9/216 (4%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + + ++ P ++ TCF +F IVF ++R +G+ +P N+ + S+AL ++ +VM Sbjct: 5 ISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNSVALLLSMFVM 64 Query: 100 SPTLDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 P + + N+ + + + + + ++ + + + F + Sbjct: 65 WPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQFFENAQLKRQY 124 Query: 158 NT-------DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 D + + L+P++ +SE++ +F+IGF + LPF+++D++V+++++A+G Sbjct: 125 GEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALG 184 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 MMM+ P +IS P K++ FV +DGW+LL + L+ ++ Sbjct: 185 MMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQYM 220 >gi|193062099|ref|ZP_03043195.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli E22] gi|192932319|gb|EDV84917.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli E22] Length = 217 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 69/212 (32%), Positives = 126/212 (59%), Gaps = 4/212 (1%) Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92 ++I + + +F +LS+ PI +++ T F + IV IL+ +G+ VPPN+ + S++L Sbjct: 5 MTIGSQPIFLIIVFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSL 64 Query: 93 FMTFYVMSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 +T ++MSP + + + Q +N + +++ P+ F+ N ++++ F Sbjct: 65 ILTMFIMSPIILQINDNISQEPINYTDSDFFQKVDEKILSPYRGFLEKNIEKENVEFFER 124 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 A N I K D IL+P+F + +L +F+IGFL+ LPF+ ID+I++ I++A+G Sbjct: 125 AAQKKLGNETILKKD--SLFILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALG 182 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242 MMM+ P +IS+PFK++ F+L+ GW L E L+ Sbjct: 183 MMMVSPVTISIPFKILLFILVGGWQKLFEFLL 214 >gi|21492903|ref|NP_659978.1| type III secretion system protein [Rhizobium etli CFN 42] gi|218508018|ref|ZP_03505896.1| type III secretion system protein [Rhizobium etli Brasil 5] gi|218674847|ref|ZP_03524516.1| type III secretion system protein [Rhizobium etli GR56] gi|21467328|gb|AAM54991.1| type III secretion system translocation protein [Rhizobium etli CFN 42] Length = 217 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 115/207 (55%), Gaps = 2/207 (0%) Query: 41 RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100 ++ +S+ P++ ++ T F + +V I+R +G+ PPNL++ ++A+ ++ +VM+ Sbjct: 9 QSLAAMAAISMLPVIAVIATSFTKISVVLLIVRNAIGIQQTPPNLLVFAIAIVLSAFVMN 68 Query: 101 PTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 P L S ++ + +VA P FM + + F+ + N Sbjct: 69 PVLQNSWQLLLAHSGDFGTVSGMADGMIKVAAPLKDFMLKFSDAEVRDFFVQASQKIWAN 128 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 T + +L PSF++SEL R+FEIGFLI LPFL+ID V+ I++A+GM M+ PT Sbjct: 129 APATPIASDDITVLTPSFLVSELTRAFEIGFLIYLPFLMIDFAVSAILVALGMQMMSPTV 188 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 +S P K++ FV IDGW L+E LV S+ Sbjct: 189 VSTPLKLLLFVSIDGWRRLLEGLVLSY 215 >gi|188534036|ref|YP_001907833.1| surface presentation of antigens protein SpaP [Erwinia tasmaniensis Et1/99] gi|188029078|emb|CAO96946.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99] Length = 223 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 57/213 (26%), Positives = 114/213 (53%), Gaps = 6/213 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + + + ++ P ++ TCF +F IV ++R +G+ VP NL + +AL +T +VM Sbjct: 6 ISLIALLSFFTLLPFIIAGGTCFIKFSIVLVMMRNALGIQQVPSNLTLNGVALVLTAFVM 65 Query: 100 SPTLDRS--IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 P R N + + + E + ++ + + F ++ H + Sbjct: 66 MPVCQRISGYIEAKSLDFNERGALSQLMNEGIESYREYLVRYSDHNLILFFNNVEHRNEV 125 Query: 158 NTDITKNDH----IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 + D + L+P++ +SE++ +F I F + +PF++ID++V++I++A+GMMM Sbjct: 126 TLEDRVPDEELSQLSLLTLMPAYALSEIQSAFRIAFYLYIPFVVIDLVVSSILLALGMMM 185 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 + P +IS+P K+I FV +DGW+LL + L+ ++ Sbjct: 186 MSPVTISIPIKLILFVAMDGWALLAKGLITQYL 218 >gi|153003617|ref|YP_001377942.1| type III secretion system protein [Anaeromyxobacter sp. Fw109-5] gi|152027190|gb|ABS24958.1| Yop virulence translocation R [Anaeromyxobacter sp. Fw109-5] Length = 223 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 70/189 (37%), Positives = 115/189 (60%), Gaps = 2/189 (1%) Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 M+T F + ++V SI R+ +G VPPN + LAL +T VM+P +R++ + Sbjct: 34 MLTSFLKIVVVLSIARSALGAPQVPPNTAVTGLALVLTALVMAPVGERAVAAMRAAPAGH 93 Query: 118 QITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176 + T A ++R ++P F+ R D + F+D+A R D + +L P+F Sbjct: 94 GVAGTLAQLERGSDPLRGFLLRFARADDRAAFVDVARR-LRGPDAAPPAERDLAVLAPAF 152 Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236 ++SELRR+F IGFL+ +PFL++D++V+ +++A+G+ L PTSI+LPFK++ FV +DGW L Sbjct: 153 VVSELRRAFTIGFLVFVPFLVVDLVVSNVLLALGLTQLSPTSIALPFKLLLFVAVDGWKL 212 Query: 237 LVENLVKSF 245 L L S+ Sbjct: 213 LARALALSY 221 >gi|300310129|ref|YP_003774221.1| type III secretion HrcR transmembrane protein [Herbaspirillum seropedicae SmR1] gi|300072914|gb|ADJ62313.1| type III secretion HrcR transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 220 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 60/219 (27%), Positives = 118/219 (53%), Gaps = 5/219 (2%) Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92 LS +V + ++++ P++++ T F + +V +LR +G+ VPP L I +AL Sbjct: 2 LSGQFDVVSFSVLLALMALVPLMVVTTTSFLKISLVLLVLRNAIGVQQVPPTLAIYGIAL 61 Query: 93 FMTFYVMSPTLDRSIEMGI-----QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147 ++ ++M+PT+ + + P + + Q +P FM + + + Sbjct: 62 ALSVFIMAPTVQEVGKRAMAVDVSHPAASRTVPILERAQDAFDPLRKFMLKMSHAEQREM 121 Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 F+ A + ILIP+F++SEL+ +EIGFLI +PF++ID++++ ++M Sbjct: 122 FLASAKKLWPKEAAKDAQPTDALILIPAFVVSELQTGYEIGFLIYIPFVVIDLLISNLLM 181 Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 A+GM + P +I++P K++ F L+ GW+ L+ L S++ Sbjct: 182 ALGMQQVSPQTITIPLKLLLFTLVGGWAKLLNALAMSYV 220 >gi|170766856|ref|ZP_02901309.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia albertii TW07627] gi|170124294|gb|EDS93225.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia albertii TW07627] gi|315617513|gb|EFU98119.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli 3431] Length = 217 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 70/212 (33%), Positives = 131/212 (61%), Gaps = 4/212 (1%) Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92 ++I + + +F +LS+ PI +++ T F + IV IL+ +G+ VPPN+ + S++L Sbjct: 5 MTIGSQPIFLIIVFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSL 64 Query: 93 FMTFYVMSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 +T ++MSP + + + Q ++ + +++ P+ VF+ NT +++++ F + Sbjct: 65 ILTMFIMSPIILQINDNISQEQISYTDSDFFQKVDEKILSPYRVFLEKNTDKENVAFFEN 124 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 +A N I K D IL+P+F + +L +F+IGFL+ LPF+ ID+I++ I++A+G Sbjct: 125 VAQKKLGNETILKKD--SLFILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALG 182 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242 MMM+ P +IS+PFK++ F+L+ GW L E L+ Sbjct: 183 MMMVSPVTISIPFKILLFILVGGWQKLFEFLL 214 >gi|9663064|emb|CAC01097.1| FliP flagellar protein [Helicobacter pylori] gi|9663070|emb|CAC01100.1| FliP flagellar protein [Helicobacter pylori] gi|9663082|emb|CAC01104.1| FliP flagellar protein [Helicobacter pylori] gi|9663108|emb|CAC01117.1| FliP flagellar protein [Helicobacter pylori] Length = 160 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 69/161 (42%), Positives = 108/161 (67%), Gaps = 4/161 (2%) Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98 + + T+L +AP L++++T F R I+VFS LRT +G PP +++SL+L +TF++ Sbjct: 4 TLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFI 63 Query: 99 MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 M P+L ++ + GI+P M+ +I+ T A ++ A PF FM NTREKDL+LF + + + Sbjct: 64 MEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPK 123 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199 T D + +LIP+FMISEL+ +F+IGFL+ LPFL+ID Sbjct: 124 T----PDDVSLSVLIPAFMISELKTAFQIGFLLYLPFLVID 160 >gi|190894060|ref|YP_001984354.1| type III secretion system translocation protein [Rhizobium etli CIAT 652] gi|190699721|gb|ACE93804.1| type III secretion system translocation protein [Rhizobium etli CIAT 652] Length = 217 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 69/207 (33%), Positives = 115/207 (55%), Gaps = 2/207 (0%) Query: 41 RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100 ++ +S+ P++ ++ T F + +V I+R +G+ PPNL++ ++A+ ++ +VM+ Sbjct: 9 QSLVAMAAISMLPVIAVIATSFTKISVVLLIVRNAIGIQQTPPNLLVFAIAIVLSAFVMN 68 Query: 101 PTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 P L S ++ + +VA P FM + + F+ + N Sbjct: 69 PVLQNSWQLLLAHSGDFGTVSGMADGMIKVAAPLKDFMLKFSDAEVRDFFVQASQKIWAN 128 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 T + +L PSF++SEL R+FEIGFLI LPFL+ID V+ I++A+GM M+ PT Sbjct: 129 APATSIASDDITVLTPSFLVSELTRAFEIGFLIYLPFLMIDFAVSAILVALGMQMMSPTV 188 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 +S P K++ FV IDGW L+E LV S+ Sbjct: 189 VSTPLKLLLFVSIDGWRRLLEGLVLSY 215 >gi|227357591|ref|ZP_03841944.1| flagellar biosynthesis protein FliP [Proteus mirabilis ATCC 29906] gi|227162301|gb|EEI47305.1| flagellar biosynthesis protein FliP [Proteus mirabilis ATCC 29906] Length = 219 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 56/198 (28%), Positives = 112/198 (56%), Gaps = 6/198 (3%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P ++ TC+ +F IV + R +G+ VP N+V+ ++AL M +VM+P I+ Sbjct: 18 PFIIAAGTCYLKFSIVLVMTRNALGVQQVPSNMVLNAIALMMALFVMTPITKNICYYVIE 77 Query: 113 PLMNNQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIE 168 ++ ++ AI+ + + ++ + + L+ F + + +N Sbjct: 78 NKVD--MSSPDAIESFSNEALGDYKKYLYHYSDPDLLAFFEQAQENRPNSDGDKENIENS 135 Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 L+P++ +SE++ +F IGF + LPF++ID++V+ I++A+GMMM+ P ++S+P K+I F Sbjct: 136 LLSLLPAYALSEIKSAFIIGFYLYLPFIVIDLVVSCILLALGMMMMSPITLSVPLKLILF 195 Query: 229 VLIDGWSLLVENLVKSFI 246 + +DGW LL + L+ ++ Sbjct: 196 IAMDGWGLLSKGLINQYL 213 >gi|283786652|ref|YP_003366517.1| T3SS structural protein EscR [Citrobacter rodentium ICC168] gi|15723907|gb|AAL06354.1|AF311901_6 EscR [Citrobacter rodentium] gi|282950106|emb|CBG89741.1| T3SS structural protein EscR [Citrobacter rodentium ICC168] Length = 217 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 70/212 (33%), Positives = 127/212 (59%), Gaps = 4/212 (1%) Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92 ++I + + +F S+ PI +++ T F + IV IL+ +G+ VPPN+ + S++L Sbjct: 5 MTIGSQPIFLIVVFFFFSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSL 64 Query: 93 FMTFYVMSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 +T ++MSP + + + Q +N + ++ P+ +F+ NNT ++++ F + Sbjct: 65 ILTIFIMSPIILQINDNISQEPINYTDSDFYQKVDGKIISPYRIFLENNTNKENIDFFEN 124 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 +A N K D IL+P+F + +L +F+IGFL+ LPF+ ID+I++ I++A+G Sbjct: 125 VAKKKLGNETSLKKD--SLFILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALG 182 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242 MMM+ P +IS+PFK++ F+LI GW L E L+ Sbjct: 183 MMMVSPVTISIPFKILLFILIGGWQKLFEFLL 214 >gi|9663072|emb|CAC01101.1| FliP flagellar protein [Helicobacter pylori] Length = 160 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 68/161 (42%), Positives = 107/161 (66%), Gaps = 4/161 (2%) Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98 + + T+L +AP L++++T F R I+VFS LRT +G PP +++SL+L +TF++ Sbjct: 4 TLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFI 63 Query: 99 MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 M P+L ++ + GI+P M+ +I+ T A ++ PF FM NTREKDL+LF + + + Sbjct: 64 MEPSLKKAYDTGIKPYMDKKISYTEAFEKSTLPFKEFMLKNTREKDLALFFRIRNLPNPK 123 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199 T D + +LIP+FMISEL+ +F+IGFL+ LPFL+ID Sbjct: 124 T----PDDVSLSVLIPAFMISELKTAFQIGFLLYLPFLVID 160 >gi|9663100|emb|CAC01113.1| FliP flagellar protein [Helicobacter pylori] Length = 160 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 69/161 (42%), Positives = 107/161 (66%), Gaps = 4/161 (2%) Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98 + + T+L +AP L++++T F R I+VFS LRT +G PP +++SL+L +TF++ Sbjct: 4 TLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFI 63 Query: 99 MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 M P L ++ + GI+P M+ +I+ T A ++ A PF FM NTREKDL+LF + + + Sbjct: 64 MEPNLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPK 123 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199 T D + +LIP+FMISEL+ +F+IGFL+ LPFL+ID Sbjct: 124 T----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVID 160 >gi|62085087|gb|AAX62950.1| putative type III secretion apparatus integral membrane protein component [Escherichia coli] Length = 220 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 58/213 (27%), Positives = 119/213 (55%), Gaps = 5/213 (2%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + + I ++ ++ P ++ T F +F IVF I+R +G+ VP N+ + +AL ++ Sbjct: 2 SNSISLIAILSLFTLLPFIIASGTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61 Query: 97 YVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-- 152 +VM P + NN + ++ + ++ + + ++ F + Sbjct: 62 FVMMPVGKEIYYNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVNFFEKIQKV 121 Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 +SS N +I +D+I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM Sbjct: 122 NSSEDNEEIFDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M P +IS P K+I FV +DGW++L + L+ + Sbjct: 182 M-SPVTISTPIKLILFVAMDGWTMLSKGLILQY 213 >gi|85058547|ref|YP_454249.1| surface presentation of antigens protein SpaP [Sodalis glossinidius str. 'morsitans'] gi|45504755|gb|AAS66846.1| YsaR [Sodalis glossinidius] gi|84779067|dbj|BAE73844.1| type III secretion apparatus SpaP [Sodalis glossinidius str. 'morsitans'] Length = 226 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 57/218 (26%), Positives = 115/218 (52%), Gaps = 9/218 (4%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 T + + + ++ P ++ TC+ +F IV ++R +G+ +P L + +AL +T Sbjct: 3 TNDMTLIVLLSFTTLLPFVIAGGTCYIKFSIVLVMVRNALGIQQIPSTLTLNGIALILTA 62 Query: 97 YVMSPTLDRS--IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154 +VM P Q NN + + + + ++ + +K + F + H Sbjct: 63 FVMMPVCQNISHYIETHQTNFNNIDSTMQFVDQGLGSYRDYLVRYSDKKLIRFFCETQHR 122 Query: 155 SHRNTDITKND-------HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 T + + +L+P++ +SE++ +F+I F + +PF++IDM+V++I++ Sbjct: 123 QSGGEQETDLECTEENMSSLSLMMLMPAYALSEVQSAFKIAFFLYVPFVVIDMVVSSILL 182 Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 A+GMMM+ P +IS+P K+I FV +DGW+LL + L+ + Sbjct: 183 ALGMMMMSPVTISIPIKLILFVAMDGWTLLTKGLILQY 220 >gi|9663066|emb|CAC01098.1| FliP flagellar protein [Helicobacter pylori] gi|9663068|emb|CAC01099.1| FliP flagellar protein [Helicobacter pylori] gi|9663074|emb|CAC01102.1| FliP flagellar protein [Helicobacter pylori] gi|9663076|emb|CAC01103.1| FliP flagellar protein [Helicobacter pylori] gi|9663084|emb|CAC01105.1| FliP flagellar protein [Helicobacter pylori] gi|9663086|emb|CAC01106.1| FliP flagellar protein [Helicobacter pylori] gi|9663088|emb|CAC01107.1| FliP flagellar protein [Helicobacter pylori] gi|9663092|emb|CAC01109.1| FliP flagellar protein [Helicobacter pylori] gi|9663094|emb|CAC01110.1| FliP flagellar protein [Helicobacter pylori] gi|9663096|emb|CAC01111.1| FliP flagellar protein [Helicobacter pylori] gi|9663104|emb|CAC01115.1| FliP flagellar protein [Helicobacter pylori] gi|9663106|emb|CAC01116.1| FliP flagellar protein [Helicobacter pylori] Length = 160 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 69/161 (42%), Positives = 108/161 (67%), Gaps = 4/161 (2%) Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98 + + T+L +AP L++++T F R I+VFS LRT +G PP +++SL+L +TF++ Sbjct: 4 TLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFI 63 Query: 99 MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 M P+L ++ + GI+P M+ +I+ T A ++ A PF FM NTREKDL+LF + + + Sbjct: 64 MEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPK 123 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199 T D + +LIP+FMISEL+ +F+IGFL+ LPFL+ID Sbjct: 124 T----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVID 160 >gi|254575132|gb|ACT68033.1| type III secretion apparatus [Pantoea stewartii subsp. stewartii DC283] Length = 223 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 54/212 (25%), Positives = 112/212 (52%), Gaps = 6/212 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + + + ++ P ++ TCF +F IV ++R +G+ VP L + +AL ++ +VM Sbjct: 6 ISLIALLSFFTLLPFIIAGGTCFIKFSIVLIMVRNALGIQQVPSTLTLNGVALILSAFVM 65 Query: 100 SPTLDRS--IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM----DMAH 153 P R NN + T +++ + ++ + + F + Sbjct: 66 MPVCQRISEYIESNHIDFNNSASVTQLMEQGLGSYRDYLVRYSDHDLIRFFNKVQQRRSG 125 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 + + + L+P++ +SE++ +F+I F + +PF++IDM+V++I++A+GMMM Sbjct: 126 EPVPEVEDHELSTLSLITLMPAYALSEIQSAFKIAFYLYVPFVVIDMVVSSILLALGMMM 185 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 + P +IS+P K+I FV ++GW+LL + L+ + Sbjct: 186 MSPVTISIPIKLILFVSMNGWALLTKGLIAQY 217 >gi|2865276|gb|AAC38369.1| EscR [Escherichia coli] Length = 217 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 69/212 (32%), Positives = 125/212 (58%), Gaps = 4/212 (1%) Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92 ++I + + +F +LS+ PI +++ T F + IV IL+ +G+ VPPN+ + S++L Sbjct: 5 MTIGSQPIFLIIVFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSL 64 Query: 93 FMTFYVMSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 +T ++MSP + + + Q +N + +++ P+ + NT + ++ F Sbjct: 65 ILTMFIMSPIILQINDNISQEPINYTDSDFFQKVDEKILSPYRGILEKNTEKDNVEFFER 124 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 A N I K D IL+P+F + +L +F+IGFL+ LPF+ ID+I++ I++A+G Sbjct: 125 AAQKKLGNETILKKD--SLFILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALG 182 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242 MMM+ P +IS+PFK++ F+L+ GW L E L+ Sbjct: 183 MMMVSPVTISIPFKILLFILVGGWQKLFEFLL 214 >gi|254255042|ref|ZP_04948359.1| Flagellar transport protein FliP [Burkholderia dolosa AUO158] gi|124899687|gb|EAY71530.1| Flagellar transport protein FliP [Burkholderia dolosa AUO158] Length = 250 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 76/236 (32%), Positives = 127/236 (53%), Gaps = 4/236 (1%) Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIV 68 + + LV A +L D + I + + + + T+L + P LL+ +T F R++IV Sbjct: 15 VLCASAALVCAGPALADTLTISSGGDGLSIKTQILVLMTLLGLLPALLMTMTSFLRYVIV 74 Query: 69 FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128 S+L+ +G+ P VI +AL +T M P + E P +I A++ Sbjct: 75 LSLLKQALGLQQGLPARVITGVALVLTLLTMRPVGEAIWEKAYVPYEQEKIGLRQALKAA 134 Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188 P FM T + L+ ++ + + + + + +F++SEL+ +F+IG Sbjct: 135 DAPLSQFMLAQTSKATLAQIAKLSGTEAIKEPTQQ----PFLVKLSAFVLSELKTAFQIG 190 Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 ++ +PFL+ID+IVA+++MAMGMMML P ISLP K++ FVL+DGWSL V L+ S Sbjct: 191 AMLFIPFLVIDIIVASVLMAMGMMMLSPLVISLPLKLLLFVLVDGWSLTVSTLLTS 246 >gi|9663102|emb|CAC01114.1| FliP flagellar protein [Helicobacter pylori] Length = 160 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 68/161 (42%), Positives = 107/161 (66%), Gaps = 4/161 (2%) Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98 + + T+L +AP L++++T F R I+VFS LRT +G PP +++SL+L +TF++ Sbjct: 4 TLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFI 63 Query: 99 MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 M P+L ++ + GI+P M+ +I+ T A ++ PF FM NTREKDL+LF + + + Sbjct: 64 MEPSLKKAYDTGIKPYMDKKISYTEAFEKSTLPFKEFMLKNTREKDLALFFRIRNLPNPK 123 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199 T D + +LIP+FMISEL+ +F+IGFL+ LPFL+ID Sbjct: 124 T----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVID 160 >gi|197286517|ref|YP_002152389.1| surface presentation of antigens protein SpaP [Proteus mirabilis HI4320] gi|194684004|emb|CAR45294.1| type III secretion system protein [Proteus mirabilis HI4320] Length = 219 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 56/198 (28%), Positives = 112/198 (56%), Gaps = 6/198 (3%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P ++ TC+ +F IV + R +G+ VP N+V+ ++AL M +VM+P I+ Sbjct: 18 PFIIAAGTCYLKFSIVLVMTRNALGVQQVPSNMVLNAIALMMALFVMTPITKNICYYIIE 77 Query: 113 PLMNNQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIE 168 ++ ++ AI+ + + ++ + + L+ F + + +N Sbjct: 78 NKVD--MSSPDAIESFSNEALGDYKKYLYHYSDPDLLAFFEQAQENRPNSDGDKENIENS 135 Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 L+P++ +SE++ +F IGF + LPF++ID++V+ I++A+GMMM+ P ++S+P K+I F Sbjct: 136 LLSLLPAYALSEIKSAFIIGFYLYLPFIVIDLVVSCILLALGMMMMSPITLSVPLKLILF 195 Query: 229 VLIDGWSLLVENLVKSFI 246 + +DGW LL + L+ ++ Sbjct: 196 IAMDGWGLLSKGLINQYL 213 >gi|170698145|ref|ZP_02889224.1| Yop virulence translocation R [Burkholderia ambifaria IOP40-10] gi|170136910|gb|EDT05159.1| Yop virulence translocation R [Burkholderia ambifaria IOP40-10] Length = 223 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 61/216 (28%), Positives = 116/216 (53%), Gaps = 11/216 (5%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + + + ++ P ++ TC+ +F IV ++R +G+ VP NLV+ S+AL ++ +VM Sbjct: 6 ILLIVLLSAATLLPFVIASGTCYVKFSIVLVLVRNALGIQQVPSNLVLNSIALILSLFVM 65 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 P R+ G +T + ++ V + R D SL AH+ Sbjct: 66 MPVSYRAY--GYLQTHQVDMTNSQSLHDFVDGGLGDYKHYLERYADPSLVKFFAHAQAPR 123 Query: 159 TDI--------TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 +L+P++ +SE++ +F+IGF + +PFL++D+IV+ +++A+G Sbjct: 124 DADDGAATDDDPSAREHALTVLLPAYALSEIKSAFKIGFYLYVPFLVVDLIVSNVLLALG 183 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 MMM+ P +IS+P K+I FV +DGW+L+ + L+ ++ Sbjct: 184 MMMMSPVTISVPIKLILFVAMDGWTLICKGLILQYM 219 >gi|327192841|gb|EGE59767.1| type III secretion system protein [Rhizobium etli CNPAF512] Length = 204 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 69/202 (34%), Positives = 113/202 (55%), Gaps = 2/202 (0%) Query: 46 FTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDR 105 +S+ P++ ++ T F + +V I+R +G+ PPNL++ ++A+ ++ +VM+P L Sbjct: 1 MAAISMLPVIAVIATSFTKISVVLLIVRNAIGIQQTPPNLLVFAIAIVLSAFVMNPVLQN 60 Query: 106 SIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163 S ++ + +VA P FM + + F+ + N T Sbjct: 61 SWQLLLAHSGDFGTVSGMADGMIKVAAPLKDFMLKFSDAEVRDFFVQASQKIWANAPATP 120 Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 + +L PSF++SEL R+FEIGFLI LPFL+ID V+ I++A+GM M+ PT +S P Sbjct: 121 IASDDITVLTPSFLVSELTRAFEIGFLIYLPFLMIDFAVSAILVALGMQMMSPTVVSTPL 180 Query: 224 KVIFFVLIDGWSLLVENLVKSF 245 K++ FV IDGW L+E LV S+ Sbjct: 181 KLLLFVSIDGWRRLLEGLVLSY 202 >gi|260775667|ref|ZP_05884563.1| YYop virulence translocation protein R [Vibrio coralliilyticus ATCC BAA-450] gi|260608083|gb|EEX34252.1| YYop virulence translocation protein R [Vibrio coralliilyticus ATCC BAA-450] Length = 216 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 69/216 (31%), Positives = 120/216 (55%), Gaps = 2/216 (0%) Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92 +S+ V +S+ P++ I T F + +V I+R +G+ VPP++ + S+AL Sbjct: 1 MSLDGNPVTLALFLGAMSLIPLMFITTTAFLKIAMVLMIVRNALGVQQVPPSMAVYSIAL 60 Query: 93 FMTFYVMSPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 TF+VM+P G + N+ I R+ P FM +N + Sbjct: 61 AATFFVMAPVFSEIQNSVKGTESGALNEDQIVETIDRIKTPLMGFMASNVDTQISERLKS 120 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 A + + IL+PSF+ISEL+ F+IGFLI +PF++ID+IV+ I++A+G Sbjct: 121 TAREMWPARMSQSMTNESFFILLPSFVISELQAGFKIGFLIYIPFVVIDLIVSNILLALG 180 Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 M M+ P ++++P K++ FVL+DGW+ L+E+L+ +++ Sbjct: 181 MQMVAPITVTVPIKILLFVLVDGWAKLLESLIYTYL 216 >gi|167573308|ref|ZP_02366182.1| surface presentation of antigens protein SpaP [Burkholderia oklahomensis C6786] Length = 229 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 58/220 (26%), Positives = 116/220 (52%), Gaps = 13/220 (5%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + + T ++ P ++ +CF +F IV ++R +G+ VP NL + S+AL M+ +VM Sbjct: 6 IALIVLLTAATLVPFVVAAGSCFIKFSIVLVLVRNALGIQQVPSNLALNSIALIMSLFVM 65 Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 P + ++ N + I + ++ + + + F S + Sbjct: 66 MPVAQSAYRYLQHHPLDVMNGTSVNDFIDGGLGDYKRYLTRYSDPELVRFFERAQASRLK 125 Query: 158 NTDITKND-----------HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 D D L+P++ ++E++ +F+IGF + LPFL++DM+V++++ Sbjct: 126 GDDADAADADVAGDEPDGFDNSLFTLLPAYALTEIKSAFKIGFYLYLPFLVVDMVVSSVL 185 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +A+GMMM+ P +IS+P K+I FV +DGW+L+ + L++ ++ Sbjct: 186 LALGMMMMSPVTISVPIKLILFVAMDGWTLISKGLIEQYL 225 >gi|134282034|ref|ZP_01768740.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 305] gi|134246563|gb|EBA46651.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 305] Length = 226 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 56/217 (25%), Positives = 116/217 (53%), Gaps = 10/217 (4%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + + T ++ P ++ +CF +F IV ++R +G+ VP NL + S+AL M+ +VM Sbjct: 6 IALIVLLTAATLVPFVVAAGSCFIKFSIVLVLVRNALGIQQVPSNLALNSIALIMSLFVM 65 Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 P + ++ + + I + ++ + + + F + + Sbjct: 66 MPVAQSAYRYLQHHPLDVMSGASVNEFIDGGLGDYKRYLARYSDPELVRFFERAQTARLK 125 Query: 158 NTDITKND--------HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 D D L+P++ ++E++ +F+IGF + LPFL++DM+V+++++A+ Sbjct: 126 GDDADAADADDAPDGLDNSLFSLLPAYALTEIKSAFKIGFYLYLPFLVVDMVVSSVLLAL 185 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 GMMM+ P +IS+P K+I FV +DGW+L+ + L++ ++ Sbjct: 186 GMMMMSPVTISVPIKLILFVAMDGWTLICKGLIEQYL 222 >gi|53716462|ref|YP_106126.1| surface presentation of antigens protein SpaP [Burkholderia mallei ATCC 23344] gi|53722558|ref|YP_111543.1| surface presentation of antigens protein SpaP [Burkholderia pseudomallei K96243] gi|67641437|ref|ZP_00440216.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia mallei GB8 horse 4] gi|76819720|ref|YP_335736.1| surface presentation of antigens protein SpaP [Burkholderia pseudomallei 1710b] gi|124382629|ref|YP_001025864.1| surface presentation of antigens protein SpaP [Burkholderia mallei NCTC 10229] gi|126442644|ref|YP_001063161.1| surface presentation of antigens protein SpaP [Burkholderia pseudomallei 668] gi|126447432|ref|YP_001077949.1| surface presentation of antigens protein SpaP [Burkholderia mallei NCTC 10247] gi|126458099|ref|YP_001076112.1| surface presentation of antigens protein SpaP [Burkholderia pseudomallei 1106a] gi|167004216|ref|ZP_02269983.1| type III secretion system protein BsaW [Burkholderia mallei PRL-20] gi|167724226|ref|ZP_02407462.1| surface presentation of antigens protein SpaP [Burkholderia pseudomallei DM98] gi|167743201|ref|ZP_02415975.1| surface presentation of antigens protein SpaP [Burkholderia pseudomallei 14] gi|167820375|ref|ZP_02452055.1| surface presentation of antigens protein SpaP [Burkholderia pseudomallei 91] gi|167828747|ref|ZP_02460218.1| surface presentation of antigens protein SpaP [Burkholderia pseudomallei 9] gi|167850202|ref|ZP_02475710.1| surface presentation of antigens protein SpaP [Burkholderia pseudomallei B7210] gi|167898809|ref|ZP_02486210.1| surface presentation of antigens protein SpaP [Burkholderia pseudomallei 7894] gi|167907137|ref|ZP_02494342.1| surface presentation of antigens protein SpaP [Burkholderia pseudomallei NCTC 13177] gi|167915491|ref|ZP_02502582.1| surface presentation of antigens protein SpaP [Burkholderia pseudomallei 112] gi|167923336|ref|ZP_02510427.1| surface presentation of antigens protein SpaP [Burkholderia pseudomallei BCC215] gi|217425211|ref|ZP_03456706.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 576] gi|226196071|ref|ZP_03791657.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei Pakistan 9] gi|237509960|ref|ZP_04522675.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei MSHR346] gi|242313875|ref|ZP_04812892.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 1106b] gi|254176249|ref|ZP_04882907.1| type III secretion system protein BsaW [Burkholderia mallei ATCC 10399] gi|254186856|ref|ZP_04893372.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei Pasteur 52237] gi|254193764|ref|ZP_04900196.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei S13] gi|254200992|ref|ZP_04907357.1| type III secretion system protein BsaW [Burkholderia mallei FMH] gi|254204956|ref|ZP_04911309.1| type III secretion system protein BsaW [Burkholderia mallei JHU] gi|254265439|ref|ZP_04956304.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 1710a] gi|254301456|ref|ZP_04968900.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 406e] gi|254359075|ref|ZP_04975347.1| type III secretion system protein BsaW [Burkholderia mallei 2002721280] gi|52212972|emb|CAH39010.1| surface presentation of antigens protein [Burkholderia pseudomallei K96243] gi|52422432|gb|AAU46002.1| type III secretion system protein BsaW [Burkholderia mallei ATCC 23344] gi|76584193|gb|ABA53667.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 1710b] gi|126222135|gb|ABN85640.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 668] gi|126231867|gb|ABN95280.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 1106a] gi|126240286|gb|ABO03398.1| type III secretion system protein BsaW [Burkholderia mallei NCTC 10247] gi|147748604|gb|EDK55679.1| type III secretion system protein BsaW [Burkholderia mallei FMH] gi|147754542|gb|EDK61606.1| type III secretion system protein BsaW [Burkholderia mallei JHU] gi|148028262|gb|EDK86222.1| type III secretion system protein BsaW [Burkholderia mallei 2002721280] gi|157811160|gb|EDO88330.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 406e] gi|157934540|gb|EDO90210.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei Pasteur 52237] gi|160697291|gb|EDP87261.1| type III secretion system protein BsaW [Burkholderia mallei ATCC 10399] gi|169650515|gb|EDS83208.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei S13] gi|217391816|gb|EEC31843.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 576] gi|225931964|gb|EEH27965.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei Pakistan 9] gi|235002165|gb|EEP51589.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei MSHR346] gi|238522377|gb|EEP85822.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia mallei GB8 horse 4] gi|242137114|gb|EES23517.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 1106b] gi|243060411|gb|EES42597.1| type III secretion system protein BsaW [Burkholderia mallei PRL-20] gi|254216441|gb|EET05826.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 1710a] gi|261826900|gb|ABM99812.2| type III secretion system protein BsaW [Burkholderia mallei NCTC 10229] Length = 226 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 56/217 (25%), Positives = 116/217 (53%), Gaps = 10/217 (4%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + + T ++ P ++ +CF +F IV ++R +G+ VP NL + S+AL M+ +VM Sbjct: 6 IALIVLLTAATLVPFVVAAGSCFIKFSIVLVLVRNALGIQQVPSNLALNSIALIMSLFVM 65 Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 P + ++ + + I + ++ + + + F + + Sbjct: 66 MPVAQSAYRYLQHHPLDVMSGASVNEFIDGGLGDYKRYLTRYSDPELVRFFERAQTARLK 125 Query: 158 NTDITKND--------HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 D D L+P++ ++E++ +F+IGF + LPFL++DM+V+++++A+ Sbjct: 126 GDDADAADADDAPDGLDNSLFSLLPAYALTEIKSAFKIGFYLYLPFLVVDMVVSSVLLAL 185 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 GMMM+ P +IS+P K+I FV +DGW+L+ + L++ ++ Sbjct: 186 GMMMMSPVTISVPIKLILFVAMDGWTLICKGLIEQYL 222 >gi|9663098|emb|CAC01112.1| FliP flagellar protein [Helicobacter pylori] Length = 160 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 68/161 (42%), Positives = 107/161 (66%), Gaps = 4/161 (2%) Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98 + + T+L +AP L++++T F R I+VFS LRT +G PP +++SL+L +TF++ Sbjct: 4 TLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFI 63 Query: 99 MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 M P+L ++ + GI+P M+ +I+ A ++ A PF FM NTREKDL+LF + + + Sbjct: 64 MEPSLKKAYDTGIKPYMDKKISYIEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPK 123 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199 T D + +LIP+FMISEL+ +F+IGFL+ LPFL+ID Sbjct: 124 T----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVID 160 >gi|167566198|ref|ZP_02359114.1| surface presentation of antigens protein SpaP [Burkholderia oklahomensis EO147] Length = 229 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 57/220 (25%), Positives = 116/220 (52%), Gaps = 13/220 (5%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + + T ++ P ++ +CF +F IV ++R +G+ VP NL + S+AL M+ +VM Sbjct: 6 IALIVLLTAATLVPFVVAAGSCFIKFSIVLVLVRNALGIQQVPSNLALNSIALIMSLFVM 65 Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 P + ++ N + I + ++ + + + F + + Sbjct: 66 MPVAQSAYRYLQHHPLDVMNGTSVNDFIDGGLGDYKRYLTRYSDPELVRFFERAQAARLK 125 Query: 158 NTDITKND-----------HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 D D L+P++ ++E++ +F+IGF + LPFL++DM+V++++ Sbjct: 126 GDDADAADADVAGDEPDGFDNSLFTLLPAYALTEIKSAFKIGFYLYLPFLVVDMVVSSVL 185 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +A+GMMM+ P +IS+P K+I FV +DGW+L+ + L++ ++ Sbjct: 186 LALGMMMMSPVTISVPIKLILFVAMDGWTLISKGLIEQYL 225 >gi|188534810|ref|YP_001908607.1| surface presentation of antigens protein SpaP [Erwinia tasmaniensis Et1/99] gi|188029852|emb|CAO97733.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99] Length = 223 Score = 151 bits (382), Expect = 8e-35, Method: Composition-based stats. Identities = 56/212 (26%), Positives = 113/212 (53%), Gaps = 6/212 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + + + ++ P L+ TCF +F IV ++R +G+ VP L + +AL +T +VM Sbjct: 6 ISLIALLSFFTLLPFLIAGGTCFIKFSIVMVMVRNALGIQQVPSTLTLNGIALILTAFVM 65 Query: 100 SPTLDRS--IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 P + NN + + + + ++ + + + + F + Sbjct: 66 MPVCQKVSGYIESHHIDFNNSASINQLMDQGLGSYRDYLVHYSDHELIRFFNQVQQQKTG 125 Query: 158 NTDITKNDH----IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 T +H + L+P++ +SE++ +F+I F + +PF++IDM+V++I++A+GMMM Sbjct: 126 ETIPEVEEHELRSLSLITLMPAYALSEIQSAFKIAFYLYVPFVVIDMVVSSILLALGMMM 185 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 + P +IS+P K+I FV ++GWSLL + ++ + Sbjct: 186 MSPVTISIPIKLILFVSMNGWSLLTKGMIAQY 217 >gi|91782703|ref|YP_557909.1| type III secretion system protein [Burkholderia xenovorans LB400] gi|91686657|gb|ABE29857.1| Putative type III secretion protein, YscR-like protein [Burkholderia xenovorans LB400] Length = 211 Score = 151 bits (382), Expect = 8e-35, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 115/206 (55%), Gaps = 4/206 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 ++ +F +L + P+ + M T F +F IV ++LR+ +G+ P NLVI +AL T VM Sbjct: 8 LQNISLFFMLGLLPLAVAMTTSFTKFSIVLTLLRSALGVQQAPSNLVISGMALAATLVVM 67 Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 +PTL + E + T +Q V P FM ++R ++ + A Sbjct: 68 APTLSKI-EAALDTGDGAMPRPTELVQAVRGPLGEFMLKHSRLEERQFLVSAAKRIDPEH 126 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + D ++LIP+F+ISE+ FE GFL+ + FL++D++VA ++ AMGMMML P+++ Sbjct: 127 EAHDTD---LQLLIPAFLISEISSGFEAGFLLYIAFLVVDLVVANVLSAMGMMMLSPSTV 183 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245 S+P K+ FV G S L+ L+ S+ Sbjct: 184 SIPLKLFIFVSASGMSKLMHGLIVSY 209 >gi|254185167|ref|ZP_04891756.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 1655] gi|184215759|gb|EDU12740.1| type III secretion apparatus protein, YscR/HrcR family [Burkholderia pseudomallei 1655] Length = 226 Score = 151 bits (381), Expect = 9e-35, Method: Composition-based stats. Identities = 56/217 (25%), Positives = 116/217 (53%), Gaps = 10/217 (4%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + + T ++ P ++ +CF +F IV ++R +G+ VP NL + S+AL M+ +VM Sbjct: 6 IALIVLLTAATLVPFVVAAGSCFIKFSIVLVLVRNALGIQQVPSNLALNSIALIMSLFVM 65 Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 P + ++ + + I + ++ + + + F + + Sbjct: 66 MPIAQSAYRYLQHHPLDVMSGASVNEFIDGGLGDYKRYLARYSDPELVRFFERAQTARLK 125 Query: 158 NTDITKND--------HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 D D L+P++ ++E++ +F+IGF + LPFL++DM+V+++++A+ Sbjct: 126 GDDADAADADDAPDGLDNSLFSLLPAYALTEIKSAFKIGFYLYLPFLVVDMVVSSVLLAL 185 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 GMMM+ P +IS+P K+I FV +DGW+L+ + L++ ++ Sbjct: 186 GMMMMSPVTISVPIKLILFVAMDGWTLICKGLIEQYL 222 >gi|15042142|gb|AAK81923.1|AF292566_7 RscR [Pseudomonas fluorescens] Length = 217 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 66/209 (31%), Positives = 117/209 (55%), Gaps = 2/209 (0%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + LS+ P+LL++ T F + +IV I R +G+ VPP++ I +AL T ++M Sbjct: 9 LVLAVFLAALSLMPMLLVVCTAFLKIVIVLMITRNAIGVQQVPPSMAINGIALATTLFIM 68 Query: 100 SPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +P E + ++N T +P FM N + L+ ++ Sbjct: 69 APVGYEIAESVKALPLDLSNVQTLLQTANEAIKPLRAFMLRNIDPEVLTHLLENTARLWP 128 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + + +LIP+F++S+L+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P Sbjct: 129 AQMAQEVQREDLILLIPAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPM 188 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +ISLP K++ FV++ GWS L+++L S++ Sbjct: 189 TISLPLKLLLFVMVSGWSRLLDSLFLSYL 217 >gi|229588261|ref|YP_002870380.1| type III secretion system protein [Pseudomonas fluorescens SBW25] gi|229360127|emb|CAY46984.1| putative hairpin type III secretion protein [Pseudomonas fluorescens SBW25] Length = 217 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 66/209 (31%), Positives = 116/209 (55%), Gaps = 2/209 (0%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + LS+ P+LL++ T F + +IV I R +G+ VPP++ I +AL T ++M Sbjct: 9 LVLAVFLAALSLMPMLLVVCTAFLKIVIVLMITRNAIGVQQVPPSMAINGIALATTLFIM 68 Query: 100 SPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +P E + ++N T +P FM N L+ ++ Sbjct: 69 APVGYEIAESVKALPLDLSNVQTLLQTANEAIKPLRAFMLRNIDPDVLTHLLENTARLWP 128 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + + +LIP+F++S+L+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P Sbjct: 129 AQMAQEVQREDLILLIPAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPM 188 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +ISLP K++ FV++ GWS L+++L S++ Sbjct: 189 TISLPLKLLLFVMVSGWSRLLDSLFLSYL 217 >gi|110632472|ref|YP_672680.1| type III secretion system protein [Mesorhizobium sp. BNC1] gi|110283456|gb|ABG61515.1| Yop virulence translocation R [Chelativorans sp. BNC1] Length = 220 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 77/209 (36%), Positives = 118/209 (56%), Gaps = 2/209 (0%) Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98 I+ T LS P +++M T F + IV +LR +G+ P LVI S+AL +T +V Sbjct: 10 ILPTIIAVMALSFIPFIVVMGTAFTKISIVLMLLRNAIGVQQAPSGLVINSIALTLTVFV 69 Query: 99 MSPTLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156 M P + I Q + E + V+E F +++ + ++L FMD A Sbjct: 70 MVPVGNAIITQVQQQQLGFTGWENVSQLYSVVSEAFTGYLKQFSSPRELQFFMDAARKMW 129 Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216 T + IL+P+ + SEL R+F+I FLI LPF+++DM+V+ I++AMG MM+PP Sbjct: 130 PETLHGQITTDNVFILLPAHVTSELTRAFQIAFLIFLPFVVVDMVVSNILLAMGAMMVPP 189 Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +SLP K++ FV DGW+LL+ NLV S+ Sbjct: 190 MLVSLPIKILLFVAADGWALLLHNLVLSY 218 >gi|292487271|ref|YP_003530143.1| surface presentation of antigens protein SpaP [Erwinia amylovora CFBP1430] gi|292900357|ref|YP_003539726.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291200205|emb|CBJ47333.1| type III secretion system protein [Erwinia amylovora ATCC 49946] gi|291552690|emb|CBA19735.1| Surface presentation of antigens protein SpaP [Erwinia amylovora CFBP1430] gi|312171379|emb|CBX79638.1| Surface presentation of antigens protein SpaP [Erwinia amylovora ATCC BAA-2158] Length = 223 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 56/212 (26%), Positives = 114/212 (53%), Gaps = 6/212 (2%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + + + ++ P ++ TCF +F IV ++R +G+ VP L + +AL MT +VM Sbjct: 6 ISLIALLSFFTLLPFIIAGGTCFIKFSIVMVMVRNALGIQQVPSTLTLNGIALIMTAFVM 65 Query: 100 SPTLDRS--IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM----AH 153 P + NN + T + + + ++ + + + F + A Sbjct: 66 MPICQKISSYVETNHIDFNNSASVTQLMDQGLGGYRDYLVRYSDHELIRYFNKIQQQQAG 125 Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 S + + + L+P++ +SE++ +F+I F + +PF++ID++V++I++A+GMMM Sbjct: 126 ESAPEVEEHQLSSLSLMTLMPAYALSEIQSAFKIAFYLYVPFVVIDLVVSSILLALGMMM 185 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 + P +IS+P K+I FV ++GWSLL + ++ + Sbjct: 186 MSPVTISIPIKLILFVAMNGWSLLTKGMIAQY 217 >gi|284007398|emb|CBA72807.1| type III secretion system protein Spap [Arsenophonus nasoniae] Length = 220 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 55/211 (26%), Positives = 119/211 (56%), Gaps = 4/211 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + + ++ P ++ TC+ +F IVF + R +G+ +P N+V+ +AL ++F+V+ Sbjct: 5 ISLITLLAFSTLLPFIIATGTCYIKFSIVFIMARNALGLQQIPSNMVLNGIALMLSFFVL 64 Query: 100 SPTLDRSIEMGIQPLMNNQI--TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 P + S + + ++ + + ++ + ++ + + +S F + S Sbjct: 65 LPIVKTSYQEFNKVNIDYKDIDSIINSVNSGLSGYKNYLIKYSDKDLVSFFDKLHQKSDD 124 Query: 158 NTD--ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215 D + L+P++ +SE++ +F IGF + LPF++ID+++++I++++GMMM+ Sbjct: 125 GNDNQYENGNDSSIVSLLPAYALSEIKNAFTIGFYLYLPFVVIDLLISSILLSLGMMMMS 184 Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 P +IS+P K+I F+ +DGWSLL + L+ +I Sbjct: 185 PVTISVPIKLILFICLDGWSLLSKGLITQYI 215 >gi|8996030|gb|AAF82329.1|AF005744_8 YsaR [Yersinia enterocolitica] Length = 224 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 54/211 (25%), Positives = 106/211 (50%), Gaps = 4/211 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + I S+ P ++ TC+ I + G + L + +AL ++ +VM Sbjct: 9 IPLLAIVAFSSLLPFVIAAGTCYLENINRANYGAQCDGGTTGTFRLALNGIALLLSLFVM 68 Query: 100 SPTLDRSIEMG--IQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 P + + +N + I + +++ + + L+ F + Sbjct: 69 MPVIQDVNHYMRTEKVDFSNVDSVDKFIDGGLGSYTAYLKKYSDPELLNFFESLQQGRSE 128 Query: 158 NTDITKND--HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215 + + D L+P++ +SE++ +FEIGF I LPF++ID+I+++I++A+GMMM+ Sbjct: 129 EESMAEADTREPALFSLLPAYALSEIKSAFEIGFYIYLPFVVIDLIISSILLALGMMMMS 188 Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 P +IS+P K+I FV IDGW+L+ + L+ ++ Sbjct: 189 PVTISVPVKLILFVAIDGWALISKGLIMQYM 219 >gi|149926086|ref|ZP_01914349.1| Yop virulence translocation protein R [Limnobacter sp. MED105] gi|149825374|gb|EDM84585.1| Yop virulence translocation protein R [Limnobacter sp. MED105] Length = 217 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 64/215 (29%), Positives = 116/215 (53%), Gaps = 6/215 (2%) Query: 36 STWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMT 95 S + LS+ P++ + T F + V ILR +G+ VP N+V+ +++ MT Sbjct: 4 SINPIGLIVTIASLSVLPLVAVTATSFLKISAVLLILRNAIGVQQVPSNMVLYGISMVMT 63 Query: 96 FYVMSPTLDRSIE----MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 VM L + + G P+ ++ +I PF FM N L+ F + Sbjct: 64 LLVMGSILTEAGQRFAPDGKMPVSGTEV--LESINASVPPFKKFMLANVNPGYLNSFHET 121 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 A + D + + + +++P+F+ SEL +F IG + LPF+IID+ V++ +MA+GM Sbjct: 122 AQKFQKKYDAPEVEKTDLFVVLPAFVASELAEAFRIGLYLYLPFVIIDLAVSSALMALGM 181 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 MM+ P S+++P K++ FV ++GW+ +++ LV S++ Sbjct: 182 MMVSPMSLTVPAKIVLFVAVEGWAKVLQGLVNSYL 216 >gi|15645308|ref|NP_207479.1| flagellar biosynthesis protein FliP [Helicobacter pylori 26695] gi|4580427|gb|AAD14890.2| flagellar biosynthetic protein (fliP) [Helicobacter pylori 26695] Length = 153 Score = 148 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 78/154 (50%), Positives = 115/154 (74%), Gaps = 4/154 (2%) Query: 92 LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 + +TF++M P+L ++ + GI+P M+ +I+ T A ++ A PF FM NTREKDL+LF + Sbjct: 1 MILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLKNTREKDLALFFRI 60 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + + T D + +LIP+FMISEL+ +F+IGFL+ LPFL+IDM++++I+MAMGM Sbjct: 61 RNLPNPKT----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVIDMVISSILMAMGM 116 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MMLPP ISLPFK++ F+L+DG++LL ENLV SF Sbjct: 117 MMLPPVMISLPFKILVFILVDGFNLLTENLVASF 150 >gi|186976183|gb|ACD01065.1| EpaP [Escherichia coli O157:H7 str. EC10] Length = 221 Score = 148 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 62/213 (29%), Positives = 122/213 (57%), Gaps = 4/213 (1%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 + + I ++ ++ P ++ TCF +F IVF I+R +G+ VP N+ + +AL ++ Sbjct: 2 SNSISLIAILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61 Query: 97 YVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-- 152 +VM P + NN + ++ + ++R + + +S F + Sbjct: 62 FVMMPVGKEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLRKYSEPELVSFFEKIQKV 121 Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212 +SS N DI +D+I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM Sbjct: 122 NSSEDNEDIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181 Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 M+ P +IS P K+I FV +DGW++L + L+ + Sbjct: 182 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214 >gi|9663090|emb|CAC01108.1| FliP flagellar protein [Helicobacter pylori] Length = 160 Score = 148 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 66/147 (44%), Positives = 101/147 (68%), Gaps = 4/147 (2%) Query: 53 PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 P L++++T F R I+VFS LRT +G PP +++SL+L +TF++M P+L ++ + GI+ Sbjct: 18 PSLILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIK 77 Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172 P M+ +I+ T A ++ A PF FM NTREKDL+LF + + + T D + +L Sbjct: 78 PYMDKKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKT----PDEVSLSVL 133 Query: 173 IPSFMISELRRSFEIGFLIILPFLIID 199 IP+FMISEL+ +F+IGFL+ LPFL+ID Sbjct: 134 IPAFMISELKTAFQIGFLLYLPFLVID 160 >gi|167576640|ref|ZP_02369514.1| flagellar biosynthesis protein FliP [Burkholderia thailandensis TXDOH] Length = 255 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 84/232 (36%), Positives = 127/232 (54%), Gaps = 7/232 (3%) Query: 13 TPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72 TP L + + + D S+ T + T+L + P L I++T F RF IV ++L Sbjct: 27 TPALAEPLELPLESLGLRGDYSVKT---QILLFMTLLGLLPALAIVMTSFLRFAIVLALL 83 Query: 73 RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132 R +G+ P VI ++AL +T VM P I+P ++IT AI R +P Sbjct: 84 RQALGLQQGLPARVITAVALLLTLLVMRPVGLDVWRHAIEPYDRDEITFREAIARAEKPI 143 Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192 FM T + L+ ++ D+ K + + + +FM+SEL+ +F+IG ++ Sbjct: 144 SRFMLAQTSKASLAQISRLSG----ERDVAKPEDHAFVVKAAAFMMSELKTAFQIGAMLF 199 Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 LPFLIID++VA+ +MAMGMMML P ISLP K++ FVL+DGW+L V L S Sbjct: 200 LPFLIIDLVVASTLMAMGMMMLSPLVISLPLKLLLFVLVDGWTLTVNTLTTS 251 >gi|284007673|emb|CBA73393.1| type III secretion sytem SpaP,YscR,HrcR,EscR [Arsenophonus nasoniae] Length = 226 Score = 148 bits (373), Expect = 8e-34, Method: Composition-based stats. Identities = 56/220 (25%), Positives = 120/220 (54%), Gaps = 8/220 (3%) Query: 35 ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFM 94 ++ V + +I ++ P L+ TC+ +F IVF ++R +G+ VP N+V+ ++AL + Sbjct: 1 MTDNPVSIIILLSIATLLPFLIAAGTCYLKFSIVFVMVRNAIGVQQVPSNMVLNAIALIL 60 Query: 95 TFYVMSPTLDRSIEMGIQPLMNNQ------ITETTAIQRVAEPFWVFMRNNTREKDLSLF 148 + ++M+P + N I + + + ++ + ++ F Sbjct: 61 SLFIMAPLAKNFYLYSVNYQTENPHGFTDPILLDQFLDESLQDYRQYLHKYADPELVNFF 120 Query: 149 MDMAHSSHRNTDITKN--DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 + + + N ++ L+ ++ +SE++ +F IGF + LPF++ID++V++I+ Sbjct: 121 VAAQERVPQPENQIDNSMENGSLIPLLAAYALSEIKSAFIIGFYLYLPFVVIDLVVSSIL 180 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +A+GMMM+ P ++S+P K++ FV +DGWSLL + L+ ++ Sbjct: 181 LALGMMMMSPITLSVPIKLVLFVAMDGWSLLSKGLISQYL 220 >gi|187919910|ref|YP_001888941.1| type III secretion system protein [Burkholderia phytofirmans PsJN] gi|187718348|gb|ACD19571.1| Yop virulence translocation R [Burkholderia phytofirmans PsJN] Length = 215 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 70/208 (33%), Positives = 116/208 (55%), Gaps = 6/208 (2%) Query: 41 RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100 + F +L + P+++ M T F +F IV ++LR+ +G+ P N+ I +LAL T VM+ Sbjct: 9 QIIVFFFVLGLLPLIVTMTTSFTKFSIVLTLLRSAVGVQQAPGNMAISALALAATLVVMA 68 Query: 101 PTLDRS---IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 PT+++ + +G + T Q V P FM ++R + + + A Sbjct: 69 PTMEKIGGDLSLGERVERGQFPDVTEVYQAVRGPLGEFMMEHSRPSERAFLVTAAKRIDP 128 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 D + D + +LIP+FMISE+ FE GFL+ + FLIID+++A ++ AMGM+ML PT Sbjct: 129 ARDAQETD---FSLLIPAFMISEISSGFEAGFLLYMAFLIIDLVIANVLTAMGMVMLSPT 185 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245 ++S P K+ V + G S L+ L+ S+ Sbjct: 186 TVSTPLKLFVLVSVSGISKLMHGLIVSY 213 >gi|167840168|ref|ZP_02466852.1| surface presentation of antigens protein SpaP [Burkholderia thailandensis MSMB43] Length = 229 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 56/220 (25%), Positives = 115/220 (52%), Gaps = 13/220 (5%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + + ++ P ++ +CF +F IV ++R +G+ VP NL + S+AL M+ +VM Sbjct: 6 IALIVLLAAATLVPFVVAAGSCFIKFSIVLVLVRNALGIQQVPSNLALNSIALIMSLFVM 65 Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 P + ++ N + I + ++ + + F + + Sbjct: 66 MPVAQSAYRYLQHHPLDVMNGASVNDFIDGGLGGYKRYLTRYSDPALVRFFERAQAARLK 125 Query: 158 NTDITKND-----------HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 + D D L+P++ ++E++ +F+IGF + LPFL++DM+V++++ Sbjct: 126 SDDADAADADVAGDGPDGLDNSLFSLLPAYALTEIKSAFKIGFYLYLPFLVVDMVVSSVL 185 Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +A+GMMM+ P +IS+P K+I FV +DGW+L+ + L++ ++ Sbjct: 186 LALGMMMMSPVTISVPIKLILFVAMDGWTLICKGLIEQYL 225 >gi|83716894|ref|YP_438369.1| flagellar biosynthesis protein FliP [Burkholderia thailandensis E264] gi|167614815|ref|ZP_02383450.1| flagellar biosynthesis protein FliP [Burkholderia thailandensis Bt4] gi|257141400|ref|ZP_05589662.1| flagellar biosynthesis protein FliP [Burkholderia thailandensis E264] gi|83650719|gb|ABC34783.1| flagellar biosynthetic protein fliP [Burkholderia thailandensis E264] Length = 255 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 78/204 (38%), Positives = 116/204 (56%), Gaps = 4/204 (1%) Query: 41 RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100 + T+L + P L I++T F RF IV ++LR +G+ P VI ++AL +T VM Sbjct: 52 QILLFMTLLGLLPALAIVMTSFLRFAIVLALLRQALGLQQGLPARVITAVALLLTLLVMR 111 Query: 101 PTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD 160 P I+P ++IT AI R +P FM T + L ++ D Sbjct: 112 PVGLDVWRHAIEPYDRDEITFREAIARAEKPLSRFMLAQTSKASLEQISRLSG----ERD 167 Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220 + K + + + +FM+SEL+ +F+IG ++ LPFLIID++VA+ +MAMGMMML P IS Sbjct: 168 VAKPEDHAFVVKAAAFMMSELKTAFQIGAMLFLPFLIIDLVVASTLMAMGMMMLSPLVIS 227 Query: 221 LPFKVIFFVLIDGWSLLVENLVKS 244 LP K++ FVL+DGW+L V L S Sbjct: 228 LPLKLLLFVLVDGWTLTVNTLTTS 251 >gi|51103054|gb|AAT96200.1| HrcR [Pseudomonas viridiflava] Length = 217 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 70/212 (33%), Positives = 116/212 (54%), Gaps = 2/212 (0%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 T + LS+ P LLI+ T F + + I R +G+ VPPN+ + +AL T Sbjct: 6 TNPIMLALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATM 65 Query: 97 YVMSPTLDRSIEM-GIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154 +VM+P + PL + A ++ V EP FM NT ++ ++ Sbjct: 66 FVMAPVAHDIQQRVHDHPLELGSADKLQASLRTVIEPLQRFMTRNTDPDVVAHLLENTQR 125 Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214 + + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ Sbjct: 126 MWPKEMADQATKDDLLLAIPAFVMSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMV 185 Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 P +ISLP K++ FVL+ GWS L+++L S++ Sbjct: 186 SPMTISLPLKLLLFVLVSGWSRLLDSLFYSYM 217 >gi|162533077|ref|NP_791222.3| type III secretion protein HrcR [Pseudomonas syringae pv. tomato str. DC3000] gi|213968264|ref|ZP_03396408.1| type III secretion protein HrcR [Pseudomonas syringae pv. tomato T1] gi|28851841|gb|AAO54917.1| type III secretion protein HrcR [Pseudomonas syringae pv. tomato str. DC3000] gi|213926902|gb|EEB60453.1| type III secretion protein HrcR [Pseudomonas syringae pv. tomato T1] Length = 200 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 67/200 (33%), Positives = 112/200 (56%), Gaps = 2/200 (1%) Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108 +S+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +VM+P + Sbjct: 1 MSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVAHEMQQ 60 Query: 109 M-GIQPLMNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 PL + A R EP FM NT ++ +D + Sbjct: 61 RVHDHPLELGNTEKLQASARTVIEPLQRFMTRNTDPDVVAHLLDNTQRMWPKEMADQASK 120 Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226 + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP K++ Sbjct: 121 NDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTLSLPLKLL 180 Query: 227 FFVLIDGWSLLVENLVKSFI 246 FV++ GWS L+++L S++ Sbjct: 181 LFVMVSGWSRLLDSLFYSYM 200 >gi|51102999|gb|AAT96146.1| HrcR [Pseudomonas viridiflava] Length = 217 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 68/212 (32%), Positives = 116/212 (54%), Gaps = 2/212 (0%) Query: 37 TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 T + LS+ P LLI+ T F + + I R +G+ VPPN+ + +AL T Sbjct: 6 TNPIMLALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATM 65 Query: 97 YVMSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154 +VM+P + + + T+++ V EP FM NT ++ ++ Sbjct: 66 FVMAPVAHDIQQRVHDHPLELGSADKLQTSLRTVIEPLQRFMTRNTDPDVVAHLLENTQR 125 Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214 + + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ Sbjct: 126 MWPKEMADQATKDDLLLAIPAFVMSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMV 185 Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 P +ISLP K++ FVL+ GWS L+++L S++ Sbjct: 186 SPMTISLPLKLLLFVLVSGWSRLLDSLFYSYM 217 >gi|301381807|ref|ZP_07230225.1| type III secretion system protein [Pseudomonas syringae pv. tomato Max13] gi|302061998|ref|ZP_07253539.1| type III secretion system protein [Pseudomonas syringae pv. tomato K40] gi|302135080|ref|ZP_07261070.1| type III secretion system protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|330872918|gb|EGH07067.1| type III secretion system protein YscR [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330963055|gb|EGH63315.1| type III secretion system protein YscR [Pseudomonas syringae pv. actinidiae str. M302091] gi|331015103|gb|EGH95159.1| type III secretion system protein YscR [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 217 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 65/209 (31%), Positives = 113/209 (54%), Gaps = 2/209 (0%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + +S+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +VM Sbjct: 9 LLLALFLGAMSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVM 68 Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +P + + N + + V EP FM NT ++ +D Sbjct: 69 APVAHEMQQRVHDHPLELGNTEKLQASARTVIEPLQRFMTRNTDPDVVAHLLDNTQRMWP 128 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P Sbjct: 129 KEMADQASKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPM 188 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246 ++SLP K++ FV++ GWS L+++L S++ Sbjct: 189 TLSLPLKLLLFVMVSGWSRLLDSLFYSYM 217 >gi|11276516|gb|AAG33884.1| HrcR [Pseudomonas syringae pv. tomato] Length = 208 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 65/207 (31%), Positives = 112/207 (54%), Gaps = 2/207 (0%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 +S+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +VM+P Sbjct: 2 LALFLGAMSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAP 61 Query: 102 TLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 + + N + + V EP FM NT ++ +D Sbjct: 62 VAHEMQQRVHDHPLELGNTEKLQASARTVIEPLQRFMTRNTDPDVVAHLLDNTQRMWPKE 121 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++ Sbjct: 122 MADQASKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTL 181 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246 SLP K++ FV++ GWS L+++L S++ Sbjct: 182 SLPLKLLLFVMVSGWSRLLDSLFYSYM 208 >gi|161611342|ref|YP_273544.2| type III secretion system protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 215 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 65/209 (31%), Positives = 117/209 (55%), Gaps = 2/209 (0%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + LS+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +VM Sbjct: 7 IMLALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVM 66 Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +P + + + + ++++ V EP FM NT ++ ++ Sbjct: 67 APVAHEIQQRVHEHPLELGSADKLQSSLKTVIEPLQRFMTRNTDPDVVAHLLENTQRMWP 126 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + + + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P Sbjct: 127 KEMADQANKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPM 186 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246 ++SLP K++ FVL+ GWS L+++L S++ Sbjct: 187 TLSLPLKLLLFVLVSGWSRLLDSLFYSYM 215 >gi|170737012|ref|YP_001778272.1| flagellar biosynthetic protein FliP [Burkholderia cenocepacia MC0-3] gi|169819200|gb|ACA93782.1| flagellar biosynthetic protein FliP [Burkholderia cenocepacia MC0-3] Length = 248 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 71/244 (29%), Positives = 129/244 (52%), Gaps = 5/244 (2%) Query: 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60 ++RY AL ++ + + T + + T+L + P LL+ +T Sbjct: 6 LLRYLGLALAAFA-MPALVQAETLTLASDGVGGQGFTVKTQILVLMTLLGLLPALLMTMT 64 Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120 F R++IV S+++ +G+ P ++ +AL +T M P + + P +I+ Sbjct: 65 SFLRYVIVLSLVKQALGLQQGLPGRIVTGVALVLTMLTMRPVGEEIWQKAFVPYDQGKIS 124 Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 TA+ +P +M T + L+ ++ + + + + + + +F++SE Sbjct: 125 MQTALATSEQPLGRYMLAQTNKATLAQMAKLSGTEK----VMDPEKQPFLVKLSAFVLSE 180 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240 L+ +F++G ++ +PFLI+D+IVA+++MAMGMMML P ISLP K++ FVL+DGWSL V Sbjct: 181 LKTAFQMGAMLFIPFLIVDIIVASVLMAMGMMMLSPLVISLPLKLLLFVLVDGWSLTVNT 240 Query: 241 LVKS 244 LV S Sbjct: 241 LVTS 244 >gi|307944366|ref|ZP_07659707.1| type III secretion apparatus protein, YscR/HrcR family [Roseibium sp. TrichSKD4] gi|307772712|gb|EFO31932.1| type III secretion apparatus protein, YscR/HrcR family [Roseibium sp. TrichSKD4] Length = 212 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 62/208 (29%), Positives = 112/208 (53%), Gaps = 3/208 (1%) Query: 41 RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100 + G+ + SI P ++ T F + + ILR +G+ PPN+ + ++ L + ++ + Sbjct: 6 QFLGMLILASIVPFFIVGTTAFIKIATILFILRNAIGLQQTPPNMALYAITLALVAFIQA 65 Query: 101 PTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 P + + + N+ + A + +P FM + D + F+D + ++ Sbjct: 66 PVFVATYDILAALPIDFNSPASLQDAFVKGLQPISDFMNKHVTLADKTFFLDAGNELYKG 125 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 + + ++ + +L+P+FM +EL + + G LI LPFL ID++V I+ A+GM M+ P Sbjct: 126 SRLKVTEN-SFLVLLPAFMNAELNAALQAGVLIFLPFLAIDIVVTNILSALGMSMVSPMV 184 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSFI 246 ISLPFKV+ FV DGWS L +L+ S+I Sbjct: 185 ISLPFKVLLFVAADGWSKLTHSLILSYI 212 >gi|227114168|ref|ZP_03827824.1| type III secretion system protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|253688597|ref|YP_003017787.1| Yop virulence translocation R [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755175|gb|ACT13251.1| Yop virulence translocation R [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 217 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 70/215 (32%), Positives = 121/215 (56%), Gaps = 2/215 (0%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 S + + LS+ P+++I+ TCF + IV I R +G+ VPPN+ + +AL Sbjct: 3 SGAFDPLMFALFLGALSLIPLMMIVCTCFLKIAIVLLITRNAIGVQQVPPNMALYGIALA 62 Query: 94 MTFYVMSPTLDRS-IEMGIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDM 151 T +VM+P + +PL IT A + EP FM N L+ + Sbjct: 63 ATLFVMAPVFQDISKRVQEKPLDMTDITSLQASVTYGLEPLQTFMSRNVDPDILTHLHEN 122 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + + K + ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM Sbjct: 123 SLQMWPASLSEKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGM 182 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 M+ P ++SLP K++ FVL++GW+ L++ L S++ Sbjct: 183 QMVAPMTLSLPLKLLLFVLVNGWTRLLDGLFYSYL 217 >gi|146305087|ref|YP_001185552.1| type III secretion system protein [Pseudomonas mendocina ymp] gi|145573288|gb|ABP82820.1| Yop virulence translocation R [Pseudomonas mendocina ymp] Length = 217 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 69/209 (33%), Positives = 117/209 (55%), Gaps = 2/209 (0%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + LS+ P LLI+ T F + + I R +G+ VPPN+ I +AL T +VM Sbjct: 9 IMLALFLGALSLIPFLLIVCTAFLKIAMTLMITRNAIGVQQVPPNMAIYGIALAATMFVM 68 Query: 100 SPTLDRS-IEMGIQPL-MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +P + PL +++ + + V EP FM NNT + ++ Sbjct: 69 APVAYEIQNRLSDNPLDLSSTDSLQASAGNVVEPLQDFMVNNTDPDIATHLLENTQRMWP 128 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 K + + IP+F++SEL+ +F+IGFLI +PF++ID+I++ +++A+GM M+ P Sbjct: 129 REMSEKASKSDLLLAIPAFVLSELQAAFQIGFLIYIPFIVIDLIISNLLLALGMQMVSPM 188 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +ISLP K++ FVL+DGW+ L+ +L S++ Sbjct: 189 TISLPLKLLLFVLVDGWTRLLNSLFYSYM 217 >gi|251789493|ref|YP_003004214.1| type III secretion system protein [Dickeya zeae Ech1591] gi|247538114|gb|ACT06735.1| Yop virulence translocation R [Dickeya zeae Ech1591] Length = 217 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 68/215 (31%), Positives = 119/215 (55%), Gaps = 2/215 (0%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 S S V LS+ P+ +I+ TCF + +V I R +G+ VPPN+ + +AL Sbjct: 3 SGSFDPVMFALFLGTLSLIPLSMIVCTCFLKISMVLMITRNAIGVQQVPPNMALYGIALA 62 Query: 94 MTFYVMSPTLDRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 T +VM+P + +N +++ R EP FM NT L+ + Sbjct: 63 ATVFVMAPVFSDIKQRFQDAPVDFSNLDALESSVTRGIEPLQKFMSRNTDPDILTHLHEN 122 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + K +++P++++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM Sbjct: 123 SLRMWPAAMSEKITTQSILLIVPAYVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGM 182 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 M+ PT++SLP K++ FVL++GW+ L++ L S++ Sbjct: 183 QMVAPTTLSLPLKLLLFVLVNGWTRLLDGLFYSYL 217 >gi|331653360|ref|ZP_08354365.1| flagellar biosynthetic protein FliP [Escherichia coli M718] gi|331049458|gb|EGI21530.1| flagellar biosynthetic protein FliP [Escherichia coli M718] Length = 145 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 64/147 (43%), Positives = 101/147 (68%), Gaps = 4/147 (2%) Query: 99 MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 MSP +D+ QP +I+ A+++ A+P FM TRE DL LF +A++ Sbjct: 1 MSPVIDKIYVDAYQPFSEEKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTG--- 57 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 + + + RIL+P+++ SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP + Sbjct: 58 -PLQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPAT 116 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245 I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 117 IALPFKLMLFVLVDGWQLLVGSLAQSF 143 >gi|28628132|gb|AAO34616.1| HrcR [Erwinia chrysanthemi] Length = 217 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 67/215 (31%), Positives = 119/215 (55%), Gaps = 2/215 (0%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 S S V LS+ P+ +I+ TCF + +V + R +G+ VPPN+ + +AL Sbjct: 3 SGSFDPVMFALFLGTLSLIPLSMIVCTCFLKISMVLMLTRNAIGVQQVPPNMALYGIALA 62 Query: 94 MTFYVMSPTLDRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 T +VM+P + +N +++ R EP FM NT L+ + Sbjct: 63 ATVFVMAPVFSDIKQRFQDAPVDFSNLDALESSVTRGIEPLQKFMSRNTDPDILTHLHEN 122 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + K +++P++++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM Sbjct: 123 SLRMWPAAMSEKITTQSILLIVPAYVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGM 182 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 M+ PT++SLP K++ FVL++GW+ L++ L S++ Sbjct: 183 QMVAPTTLSLPLKLLLFVLVNGWTRLLDGLFYSYL 217 >gi|50121007|ref|YP_050174.1| type III secretion system protein [Pectobacterium atrosepticum SCRI1043] gi|42560424|gb|AAS20384.1| HrcR [Pectobacterium atrosepticum] gi|49611533|emb|CAG74981.1| type III secretion protein [Pectobacterium atrosepticum SCRI1043] Length = 217 Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats. Identities = 70/215 (32%), Positives = 121/215 (56%), Gaps = 2/215 (0%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 S + + LS+ P+++I+ TCF + IV I R +G+ VPPN+ + +AL Sbjct: 3 SGAFDPLMFALFLGALSLIPLMMIVCTCFLKIAIVLLITRNAIGVQQVPPNMALYGIALA 62 Query: 94 MTFYVMSPTLDRS-IEMGIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDM 151 T +VM+P + +PL IT A + EP FM N L+ + Sbjct: 63 ATMFVMAPVFQDISKRVQEKPLDMTDITSLQASVTYGLEPLQTFMSRNVDPDILTHLHEN 122 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + + K + ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM Sbjct: 123 SLQMWPASLSEKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGM 182 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 M+ P ++SLP K++ FVL++GW+ L++ L S++ Sbjct: 183 QMVAPMTLSLPLKLLLFVLVNGWTRLLDGLFYSYL 217 >gi|3282781|gb|AAC25069.1| HrcR [Pseudomonas syringae pv. phaseolicola] gi|42562002|gb|AAS20444.1| HrcR [Pseudomonas syringae pv. phaseolicola] gi|71555436|gb|AAZ34647.1| type III secretion component protein HrcR [Pseudomonas syringae pv. phaseolicola 1448A] Length = 208 Score = 145 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 65/207 (31%), Positives = 116/207 (56%), Gaps = 2/207 (0%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 LS+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +VM+P Sbjct: 2 LALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAP 61 Query: 102 TLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 + + + + ++++ V EP FM NT ++ ++ Sbjct: 62 VAHEIQQRVHEHPLELGSADKLQSSLKTVIEPLQRFMTRNTDPDVVAHLLENTQRMWPKE 121 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++ Sbjct: 122 MADQANKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTL 181 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246 SLP K++ FVL+ GWS L+++L S++ Sbjct: 182 SLPLKLLLFVLVSGWSRLLDSLFYSYM 208 >gi|289623683|ref|ZP_06456637.1| type III secretion system protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647643|ref|ZP_06478986.1| type III secretion system protein [Pseudomonas syringae pv. aesculi str. 2250] gi|298485949|ref|ZP_07004024.1| type III secretion system inner membrane protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159535|gb|EFI00581.1| type III secretion system inner membrane protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320322955|gb|EFW79045.1| type III secretion system protein [Pseudomonas syringae pv. glycinea str. B076] gi|320329922|gb|EFW85910.1| type III secretion system protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330871287|gb|EGH05996.1| type III secretion system protein YscR [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330874622|gb|EGH08771.1| type III secretion system protein YscR [Pseudomonas syringae pv. glycinea str. race 4] Length = 217 Score = 145 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 65/209 (31%), Positives = 117/209 (55%), Gaps = 2/209 (0%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + LS+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +VM Sbjct: 9 IMLALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVM 68 Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +P + + + + ++++ V EP FM NT ++ ++ Sbjct: 69 APVAHEIQQRVHEHPLELGSADKLQSSLKTVIEPLQRFMTRNTDPDVVAHLLENTQRMWP 128 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + + + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P Sbjct: 129 KEMADQANKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPM 188 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246 ++SLP K++ FVL+ GWS L+++L S++ Sbjct: 189 TLSLPLKLLLFVLVSGWSRLLDSLFYSYM 217 >gi|34500877|gb|AAQ73905.1| HrcR [Pectobacterium carotovorum subsp. carotovorum] Length = 217 Score = 145 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 70/215 (32%), Positives = 122/215 (56%), Gaps = 2/215 (0%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 S + + LS+ P+++I+ TCF + IV I R +G+ VPPN+ + +AL Sbjct: 3 SGAFDPLMFALFLGALSLIPLMMIVCTCFLKIAIVLLITRNAIGVQQVPPNMALYGIALA 62 Query: 94 MTFYVMSPTLDRS-IEMGIQPLMNNQIT-ETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 T +VM+P + +PL IT T++ EP FM N L+ + Sbjct: 63 ATLFVMAPVFQDITKRVQEKPLDMTDITSLQTSVTYGLEPLQTFMSRNVDPDILTHLHEN 122 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + + K + ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM Sbjct: 123 SLQMWPASLSEKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGM 182 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 M+ P ++SLP K++ FVL++GW+ L++ L S++ Sbjct: 183 QMVAPMTLSLPLKLLLFVLVNGWTRLLDGLFYSYL 217 >gi|227328491|ref|ZP_03832515.1| type III secretion system protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 217 Score = 145 bits (365), Expect = 8e-33, Method: Composition-based stats. Identities = 70/215 (32%), Positives = 122/215 (56%), Gaps = 2/215 (0%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 S + + LS+ P+++I+ TCF + IV I R +G+ VPPN+ + +AL Sbjct: 3 SGAFDPLMFALFLGALSLIPLMMIVCTCFLKIAIVLLITRNAIGVQQVPPNMALYGIALA 62 Query: 94 MTFYVMSPTLDRS-IEMGIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDM 151 T +VM+P + +PL IT A + EP +FM N L+ + Sbjct: 63 ATLFVMAPVFQDISKRVQEKPLDMTDITSLQASVTYGLEPLQMFMSRNVDPDILTHLHEN 122 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + + K + ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM Sbjct: 123 SLQMWPASLSEKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGM 182 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 M+ P ++SLP K++ FVL++GW+ L++ L S++ Sbjct: 183 QMVAPMTLSLPLKLLLFVLVNGWTRLLDGLFYSYL 217 >gi|66044459|ref|YP_234300.1| type III secretion system protein [Pseudomonas syringae pv. syringae B728a] gi|63255166|gb|AAY36262.1| type III secretion protein HrcR [Pseudomonas syringae pv. syringae B728a] gi|330969104|gb|EGH69170.1| type III secretion system protein YscR [Pseudomonas syringae pv. aceris str. M302273PT] Length = 217 Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats. Identities = 66/209 (31%), Positives = 116/209 (55%), Gaps = 2/209 (0%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + LS+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +VM Sbjct: 9 IMLALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVM 68 Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +P + + + N ++++ V EP FM NT ++ ++ Sbjct: 69 APVAHDIQQRVHEHPLELSNADKLQSSLKVVIEPLQRFMTRNTDPDVVAHLLENTQRMWP 128 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P Sbjct: 129 KEMADQASKDDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPM 188 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246 ++SLP K++ FVL+ GWS L+++L S++ Sbjct: 189 TLSLPLKLLLFVLVSGWSRLLDSLFYSYM 217 >gi|2494569|sp|Q60236|HRPW_PSESY RecName: Full=Harpin secretion protein hrpW gi|818891|gb|AAB05075.1| HrpW [Pseudomonas syringae pv. syringae] gi|148562540|gb|ABQ88359.1| HrcR [Pseudomonas syringae pv. syringae] Length = 208 Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats. Identities = 66/207 (31%), Positives = 116/207 (56%), Gaps = 2/207 (0%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 LS+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +VM+P Sbjct: 2 LALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAP 61 Query: 102 TLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 + + + N ++++ V EP FM NT ++ ++ Sbjct: 62 VAHDIQQRVHEHPLELSNADKLQSSLKVVIEPLQRFMTRNTDPDVVAHLLENTQRMWPKE 121 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++ Sbjct: 122 MADQANKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTL 181 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246 SLP K++ FVL+ GWS L+++L S++ Sbjct: 182 SLPLKLLLFVLVSGWSRLLDSLFYSYM 208 >gi|330975864|gb|EGH75930.1| type III secretion system protein YscR [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 217 Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats. Identities = 66/209 (31%), Positives = 117/209 (55%), Gaps = 2/209 (0%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + LS+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +VM Sbjct: 9 IMLALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVM 68 Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +P + + + N ++++ V EP FM NT ++ ++ Sbjct: 69 APVAHDIQQRVHEHPLELSNADKLQSSLKVVIEPLQRFMTRNTDPDVVAHLLENTQRMWP 128 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + + + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P Sbjct: 129 KEMADQANKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPM 188 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246 ++SLP K++ FVL+ GWS L+++L S++ Sbjct: 189 TLSLPLKLLLFVLVSGWSRLLDSLFYSYM 217 >gi|323166471|gb|EFZ52235.1| surface presentation of antigens protein spaP [Shigella sonnei 53G] Length = 181 Score = 144 bits (364), Expect = 9e-33, Method: Composition-based stats. Identities = 49/178 (27%), Positives = 106/178 (59%), Gaps = 3/178 (1%) Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ-PLMNNQITETTAI-QRV 128 ++R +G+ VP N+ + +AL M +VM P ++ E + P + I++ Sbjct: 1 MVRNALGLQQVPSNMTLNGIALIMALFVMKPIIEAGYENYLNGPQKFDTISDIVRFSDSG 60 Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188 + +++ +T + L+ F + + + +N+ L+P++ +SE++ +F+IG Sbjct: 61 LMEYKQYLKKHTDLE-LARFFQRSEEENADLKSAENNDYSLFSLLPAYALSEIKDAFKIG 119 Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 F + LPF+++D+++++I++A+GMMM+ P +IS+P K++ FV +DGW +L + L++ +I Sbjct: 120 FYLYLPFVVVDLVISSILLALGMMMMSPITISVPIKLVLFVALDGWGILSKALIEQYI 177 >gi|285018283|ref|YP_003375994.1| xanthomonas secretion apparatus protein [Xanthomonas albilineans GPE PC73] gi|283473501|emb|CBA16004.1| probable xanthomonas secretion apparatus protein [Xanthomonas albilineans] Length = 231 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 61/221 (27%), Positives = 119/221 (53%), Gaps = 12/221 (5%) Query: 38 WIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFY 97 + + ++++ P L TCF +F +VF +LR +GM VP N+V+ S+AL + + Sbjct: 5 QELSLIALIAVMALIPFLFASGTCFLKFSVVFVLLRNAIGMQQVPSNMVLNSIALMLAAF 64 Query: 98 VMSPTLDRSIEMGIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDM----- 151 VM P + + + + E + V P+ ++ ++ + F + Sbjct: 65 VMQPVITSTFHAFQETDQVTSMDEVGPYLTTVLTPYRQYLAKYADKELVEFFQRVPSTVQ 124 Query: 152 ------AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205 + + I + L+P++ ++ELR +F IGF + LPF++ID+IV+ + Sbjct: 125 NTPTTPGQGTANQSAIHQVQQPSLYALLPAYGLTELRDAFRIGFYLYLPFVVIDLIVSNV 184 Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 ++A+GMMM+ P +IS+P K+I FV +DGW+L+ ++L++ ++ Sbjct: 185 LLALGMMMMSPVTISMPIKLILFVALDGWTLVSKDLMEPYM 225 >gi|289677999|ref|ZP_06498889.1| type III secretion system protein [Pseudomonas syringae pv. syringae FF5] gi|330901781|gb|EGH33200.1| type III secretion system protein YscR [Pseudomonas syringae pv. japonica str. M301072PT] Length = 217 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 66/209 (31%), Positives = 116/209 (55%), Gaps = 2/209 (0%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + LS+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +VM Sbjct: 9 IMLALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVM 68 Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +P + + + N ++++ V EP FM NT ++ ++ Sbjct: 69 APVAHDIQQRVHEHPLELSNADKLQSSLKVVIEPLQRFMTRNTDPDVVAHLLENTQRMWP 128 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P Sbjct: 129 KEMADQASKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPM 188 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246 ++SLP K++ FVL+ GWS L+++L S++ Sbjct: 189 TLSLPLKLLLFVLVSGWSRLLDSLFYSYM 217 >gi|167030914|gb|ABZ05782.1| HrcR [Pectobacterium carotovorum subsp. carotovorum] Length = 217 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 70/215 (32%), Positives = 122/215 (56%), Gaps = 2/215 (0%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 S + + LS+ P+++I+ TCF + IV I R +G+ VPPN+ + +AL Sbjct: 3 SGAFDPLMFALFLGALSLIPLMMIVCTCFLKIAIVLLITRNAIGVQQVPPNMALYGIALA 62 Query: 94 MTFYVMSPTLDRS-IEMGIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDM 151 T +VM+P + +PL IT A + EP FM N L+ + Sbjct: 63 ATLFVMAPVFQDISKRVQEKPLDMTDITSLQASVTYGLEPLQTFMSRNVDPDILTHLHEN 122 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + + + K + ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM Sbjct: 123 SLHNVACSLSEKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGM 182 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 M+ P ++SLP K++ FVL++GW+ L++ L S++ Sbjct: 183 QMVAPMTLSLPLKLLLFVLVNGWTRLLDGLFYSYL 217 >gi|307131230|ref|YP_003883246.1| type III secretion inner membrane protein [Dickeya dadantii 3937] gi|306528759|gb|ADM98689.1| type III secretion inner membrane protein [Dickeya dadantii 3937] Length = 217 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 67/215 (31%), Positives = 123/215 (57%), Gaps = 2/215 (0%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 S S V LS+ P+++I+ TCF + +V I R +G+ VPPN+ + +AL Sbjct: 3 SGSFDPVMFALFLGALSLIPLMMIVCTCFLKVSMVLMITRNAIGVQQVPPNMALYGIALA 62 Query: 94 MTFYVMSPTLDRSIEM-GIQPLMNNQIT-ETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 T +VM+P + P+ + + +++ + EP FM NT L+ + Sbjct: 63 ATLFVMAPVFSDIKQRFQDAPVDFSSLDALESSVTKGIEPLQKFMSRNTDPDILTHLHEN 122 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + + K +++P++++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM Sbjct: 123 SLRMWPASMSEKITTQNILLVLPAYVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGM 182 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 M+ PT++SLP K++ FVL++GW+ L++ L S++ Sbjct: 183 QMVAPTTLSLPLKLLLFVLVNGWTRLLDGLFYSYL 217 >gi|237800001|ref|ZP_04588462.1| type III secretion system protein YscR [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022856|gb|EGI02913.1| type III secretion system protein YscR [Pseudomonas syringae pv. oryzae str. 1_6] Length = 217 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 65/209 (31%), Positives = 114/209 (54%), Gaps = 2/209 (0%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + +S+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +VM Sbjct: 9 LLLALFLGAMSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATLFVM 68 Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +P + + + N + + V EP FM NT ++ ++ Sbjct: 69 APVAHEMQQRVHEHPLELGNTEKLQASARTVIEPLQRFMTRNTDPDVVAHLLENTQRMWP 128 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P Sbjct: 129 KEMADQASKEDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPM 188 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246 ++SLP K++ FVL+ GWS L+++L S++ Sbjct: 189 TLSLPLKLLLFVLVSGWSRLLDSLFYSYM 217 >gi|330937035|gb|EGH41123.1| type III secretion system protein YscR [Pseudomonas syringae pv. pisi str. 1704B] Length = 217 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 66/209 (31%), Positives = 115/209 (55%), Gaps = 2/209 (0%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + LS+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +VM Sbjct: 9 IMLALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVM 68 Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +P + + + N ++++ V EP FM NT ++ ++ Sbjct: 69 APVAHDIQQRVHEHPLELSNADKLQSSLKVVIEPLQRFMTRNTDPDVVAHLLENTQRMWP 128 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P Sbjct: 129 KEMADQASKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPM 188 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246 ++SLP K++ FVL+ GWS L++ L S++ Sbjct: 189 TLSLPLKLLLFVLVSGWSRLLDRLFYSYM 217 >gi|2494567|sp|Q47856|HRCR_PANAY RecName: Full=Harpin secretion protein hrcR gi|1483322|emb|CAA68098.1| HrcR protein [Pantoea agglomerans] Length = 217 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 67/203 (33%), Positives = 113/203 (55%), Gaps = 2/203 (0%) Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 LS+ PIL+I+ TCF + +V I R +G+ VPPN+ + +AL T +VM+P Sbjct: 13 LFLGALSLIPILMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVF 72 Query: 104 DRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161 ++ + Q M+N T+I P FM +NT L + + Sbjct: 73 NQMQQQFSQAPADMSNMDNLKTSITNGVAPLQKFMTHNTDPDILIHLQENSVKMWPKPMS 132 Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221 ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++ +GM M+ P ++SL Sbjct: 133 DDVSKDNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLTLGMQMVTPMTLSL 192 Query: 222 PFKVIFFVLIDGWSLLVENLVKS 244 P K++ +LI+GW+ L++ L S Sbjct: 193 PLKMLLLILINGWTRLLDGLFYS 215 >gi|330957488|gb|EGH57748.1| type III secretion system protein YscR [Pseudomonas syringae pv. maculicola str. ES4326] Length = 217 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 68/209 (32%), Positives = 119/209 (56%), Gaps = 2/209 (0%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + LS+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +VM Sbjct: 9 IMLALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVM 68 Query: 100 SPTLDRSIEM-GIQPL-MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +P + PL M++ ++++ V EP FM NT ++ ++ Sbjct: 69 APVAHDIQQRVHDHPLEMSSADKLQSSLKVVIEPLQRFMTRNTDPDVVAHLLENTQRMWP 128 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + + + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P Sbjct: 129 KEMADQANKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPM 188 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246 ++SLP K++ FVL+ GWS L+++L S++ Sbjct: 189 TLSLPLKLLLFVLVSGWSRLLDSLFYSYM 217 >gi|257487234|ref|ZP_05641275.1| type III secretion system protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330894462|gb|EGH27123.1| type III secretion system protein YscR [Pseudomonas syringae pv. mori str. 301020] gi|330984964|gb|EGH83067.1| type III secretion system protein YscR [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009152|gb|EGH89208.1| type III secretion system protein YscR [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 217 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 68/209 (32%), Positives = 119/209 (56%), Gaps = 2/209 (0%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + LS+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +VM Sbjct: 9 IMLALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVM 68 Query: 100 SPTLDRSIEM-GIQPL-MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +P + PL M++ ++++ V EP FM NT ++ ++ Sbjct: 69 APVAHDIQQRVHDHPLEMSSADKLQSSLKLVIEPLQRFMTRNTDPDVVAHLLENTQRMWP 128 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + + + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P Sbjct: 129 KEMADQANKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPM 188 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246 ++SLP K++ FVL+ GWS L+++L S++ Sbjct: 189 TLSLPLKLLLFVLVSGWSRLLDSLFYSYM 217 >gi|238577787|gb|ACR46698.1| HrcR [Pseudomonas syringae pv. tabaci] Length = 208 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 68/207 (32%), Positives = 118/207 (57%), Gaps = 2/207 (0%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 LS+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +VM+P Sbjct: 2 LALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAP 61 Query: 102 TLDRSIEM-GIQPL-MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159 + PL M++ ++++ V EP FM NT ++ ++ Sbjct: 62 VAHDIQQRVHDHPLEMSSADKLQSSLKLVIEPLQRFMTRNTDPDVVAHLLENTQRMWPKE 121 Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + + + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++ Sbjct: 122 MADQANKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTL 181 Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246 SLP K++ FVL+ GWS L+++L S++ Sbjct: 182 SLPLKLLLFVLVSGWSRLLDSLFYSYM 208 >gi|271500421|ref|YP_003333446.1| Yop virulence translocation R [Dickeya dadantii Ech586] gi|270343976|gb|ACZ76741.1| Yop virulence translocation R [Dickeya dadantii Ech586] Length = 217 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 66/215 (30%), Positives = 121/215 (56%), Gaps = 2/215 (0%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 S + V LS+ P+ +I+ TCF + +V + R +G+ VPPN+ + +AL Sbjct: 3 SGNFDPVMFALFLGSLSLIPLAMIVCTCFLKISMVLMLTRNAIGVQQVPPNMALYGVALA 62 Query: 94 MTFYVMSPTLDRS-IEMGIQPLMNNQIT-ETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 T +VM+P + P+ + + +++ R EP FM NT L+ + Sbjct: 63 ATLFVMAPVFSDIKLRFQDAPVDFSSLDALESSVTRGIEPLQKFMSRNTDPDILTHLHEN 122 Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211 + K +++P++++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM Sbjct: 123 SLRMWPAAMTEKITTQNILLILPAYVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGM 182 Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 M+ PT++SLP K++ FVL++GW+ L++ L S++ Sbjct: 183 QMVAPTTLSLPLKLLLFVLVNGWTRLLDGLFYSYL 217 >gi|82795278|gb|ABB91647.1| type III secretion protein HrcR [Pseudomonas syringae pv. tagetis] Length = 217 Score = 142 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 67/197 (34%), Positives = 109/197 (55%), Gaps = 2/197 (1%) Query: 52 APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEM-G 110 P LLI+ T F + + I R +G+ VPPN+ + +AL T +VM+P + Sbjct: 21 IPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVAHEMQQRVH 80 Query: 111 IQPLMNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169 PL + A R EP FM NT ++ +D + + Sbjct: 81 DHPLELGNTEKLQASARTVIEPLQRFMTRNTDPDVVAHLLDNTQRMWPKEMADQASKEDL 140 Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229 + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP K++ FV Sbjct: 141 LLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTLSLPLKLLLFV 200 Query: 230 LIDGWSLLVENLVKSFI 246 L+ GWS L+++L S++ Sbjct: 201 LVSGWSRLLDSLFYSYM 217 >gi|152975180|ref|YP_001374697.1| flagellar biosynthesis protein FliP [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023932|gb|ABS21702.1| Triacylglycerol lipase [Bacillus cytotoxicus NVH 391-98] Length = 252 Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 64/210 (30%), Positives = 121/210 (57%), Gaps = 4/210 (1%) Query: 35 ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFM 94 S V+ F + T+LS++ ++++ T F F+IV I R G+G+ ++PPN V++ LALF+ Sbjct: 45 TSNSSVQLFALVTLLSLSSSIVLLFTHFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFL 104 Query: 95 TFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154 + + M P L + P+ +IT + A ++ A +M +T + DL + + + Sbjct: 105 SLFTMQPVLGQLKGDVWDPMTKEKITVSQAAEKTAPIMKEYMAKHTYKHDLKMMLKVRGE 164 Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214 I L+PSF ++++++ G I L F+ ID+I++T++M +GMMM+ Sbjct: 165 ELPKNMK----DISLFTLVPSFTLTQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMV 220 Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 PP +SLPFK++ F+ + G++ +V+ + K+ Sbjct: 221 PPMILSLPFKILVFIYLGGYTKIVDIMFKT 250 >gi|330950824|gb|EGH51084.1| type III secretion system protein YscR [Pseudomonas syringae Cit 7] Length = 218 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 66/210 (31%), Positives = 117/210 (55%), Gaps = 3/210 (1%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + LS+ P LLI+ T F + + I R +G+ VPPN+ + +AL T +VM Sbjct: 9 IMLALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVM 68 Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +P + + + N ++++ V EP FM NT ++ ++ Sbjct: 69 APVAHDIQQRVHEHPLELSNADKLQSSLKVVIEPLQRFMTRNTDPDVVAHLLENTQRMWP 128 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + + + + IP+F++SEL+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P Sbjct: 129 KEMADQANKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPM 188 Query: 218 SISLPFKVIFFVLIDGWSLLVE-NLVKSFI 246 ++SLP K++ FVL+ GWS L++ +L S++ Sbjct: 189 TLSLPLKLLLFVLVSGWSRLLDPSLFYSYM 218 >gi|47565435|ref|ZP_00236476.1| flagellar biosynthetic protein fliP [Bacillus cereus G9241] gi|47557425|gb|EAL15752.1| flagellar biosynthetic protein fliP [Bacillus cereus G9241] Length = 252 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 64/210 (30%), Positives = 120/210 (57%), Gaps = 4/210 (1%) Query: 35 ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFM 94 S V+ F + T+LS++ ++++ T F F+IV I R G+G+ ++PPN V++ LALF+ Sbjct: 45 TSNSSVQLFALVTLLSLSSSIVLLFTHFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFL 104 Query: 95 TFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154 + + M P L + P+ +IT + A + A +M +T + DL + + + Sbjct: 105 SLFTMQPVLGQLKTDVWDPMTKEKITVSQAAETTAPIMKEYMSKHTYKHDLKMMLKVRGE 164 Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214 + L+PSF ++++++ G I L F+ ID+I++T++M +GMMM+ Sbjct: 165 ELPK----DLKDLSLFTLVPSFTLTQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMV 220 Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 PP +SLPFK++ FV + G++ +V+ + K+ Sbjct: 221 PPMILSLPFKILVFVYLGGYTKIVDIMFKT 250 >gi|163939576|ref|YP_001644460.1| flagellar biosynthesis protein FliP [Bacillus weihenstephanensis KBAB4] gi|163861773|gb|ABY42832.1| Triacylglycerol lipase [Bacillus weihenstephanensis KBAB4] Length = 252 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 64/210 (30%), Positives = 120/210 (57%), Gaps = 4/210 (1%) Query: 35 ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFM 94 S V+ F + T+LS++ ++++ T F F+IV I R G+G+ ++PPN V++ LALF+ Sbjct: 45 TSNSSVQLFALVTLLSLSSSIVLLFTHFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFL 104 Query: 95 TFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154 + + M P L + P+ +IT + A + A +M +T + DL + + + Sbjct: 105 SLFTMQPVLGQLKSDVWDPMTKEKITVSQAAETTAPIMKDYMSKHTYKHDLKMMLKVRGE 164 Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214 + L+PSF ++++++ G I L F+ ID+I++T++M +GMMM+ Sbjct: 165 ELPK----DLKDLSLFTLVPSFTLTQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMV 220 Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 PP +SLPFK++ FV + G++ +V+ + K+ Sbjct: 221 PPMILSLPFKILVFVYLGGYTKIVDIMFKT 250 >gi|42780859|ref|NP_978106.1| flagellar biosynthesis protein FliP [Bacillus cereus ATCC 10987] gi|49477322|ref|YP_035885.1| flagellar biosynthesis protein FliP [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52143691|ref|YP_083136.1| flagellar biosynthesis protein FliP [Bacillus cereus E33L] gi|167633258|ref|ZP_02391583.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis str. A0442] gi|170686220|ref|ZP_02877442.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis str. A0465] gi|196033278|ref|ZP_03100690.1| putative flagellar biosynthetic protein FliP [Bacillus cereus W] gi|196039146|ref|ZP_03106453.1| putative flagellar biosynthetic protein FliP [Bacillus cereus NVH0597-99] gi|196045067|ref|ZP_03112300.1| putative flagellar biosynthetic protein FliP [Bacillus cereus 03BB108] gi|206974770|ref|ZP_03235685.1| putative flagellar biosynthetic protein FliP [Bacillus cereus H3081.97] gi|217959249|ref|YP_002337797.1| flagellar biosynthesis protein FliP [Bacillus cereus AH187] gi|218902880|ref|YP_002450714.1| putative flagellar biosynthetic protein FliP [Bacillus cereus AH820] gi|254683268|ref|ZP_05147129.1| flagellar biosynthesis protein FliP [Bacillus anthracis str. CNEVA-9066] gi|254723851|ref|ZP_05185637.1| flagellar biosynthesis protein FliP [Bacillus anthracis str. A1055] gi|254741030|ref|ZP_05198718.1| flagellar biosynthesis protein FliP [Bacillus anthracis str. Kruger B] gi|300117310|ref|ZP_07055100.1| flagellar biosynthesis protein FliP [Bacillus cereus SJ1] gi|42736779|gb|AAS40714.1| flagellar biosynthetic protein FliP, putative [Bacillus cereus ATCC 10987] gi|49328878|gb|AAT59524.1| flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51977160|gb|AAU18710.1| flagellar biosynthetic protein P [Bacillus cereus E33L] gi|167531296|gb|EDR93974.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis str. A0442] gi|170669917|gb|EDT20658.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis str. A0465] gi|195993712|gb|EDX57668.1| putative flagellar biosynthetic protein FliP [Bacillus cereus W] gi|196024069|gb|EDX62743.1| putative flagellar biosynthetic protein FliP [Bacillus cereus 03BB108] gi|196030291|gb|EDX68891.1| putative flagellar biosynthetic protein FliP [Bacillus cereus NVH0597-99] gi|206746789|gb|EDZ58181.1| putative flagellar biosynthetic protein FliP [Bacillus cereus H3081.97] gi|217065617|gb|ACJ79867.1| putative flagellar biosynthetic protein FliP [Bacillus cereus AH187] gi|218539563|gb|ACK91961.1| putative flagellar biosynthetic protein FliP [Bacillus cereus AH820] gi|298725145|gb|EFI65797.1| flagellar biosynthesis protein FliP [Bacillus cereus SJ1] gi|324325784|gb|ADY21044.1| flagellar biosynthesis protein FliP [Bacillus thuringiensis serovar finitimus YBT-020] Length = 252 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 64/210 (30%), Positives = 120/210 (57%), Gaps = 4/210 (1%) Query: 35 ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFM 94 S V+ F + T+LS++ ++++ T F F+IV I R G+G+ ++PPN V++ LALF+ Sbjct: 45 TSNSSVQLFALVTLLSLSSSIVLLFTHFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFL 104 Query: 95 TFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154 + + M P L + P+ +IT + A + A +M +T + DL + + + Sbjct: 105 SLFTMQPVLGQLKSDVWDPMTKEKITVSQAAETTAPIMKEYMSKHTYKHDLKMMLKVRGE 164 Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214 + L+PSF ++++++ G I L F+ ID+I++T++M +GMMM+ Sbjct: 165 ELPK----DLKDLSLFTLVPSFTLTQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMV 220 Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 PP +SLPFK++ FV + G++ +V+ + K+ Sbjct: 221 PPMILSLPFKILVFVYLGGYTKIVDIMFKT 250 >gi|30019811|ref|NP_831442.1| flagellar biosynthesis protein FliP [Bacillus cereus ATCC 14579] gi|75763363|ref|ZP_00743101.1| Flagellar biosynthetic protein fliP [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|118477199|ref|YP_894350.1| flagellar biosynthesis protein FliP [Bacillus thuringiensis str. Al Hakam] gi|218235808|ref|YP_002366451.1| flagellar biosynthesis protein FliP [Bacillus cereus B4264] gi|218896700|ref|YP_002445111.1| putative flagellar biosynthetic protein FliP [Bacillus cereus G9842] gi|225863624|ref|YP_002749002.1| putative flagellar biosynthetic protein FliP [Bacillus cereus 03BB102] gi|296502367|ref|YP_003664067.1| flagellar biosynthesis protein FliP [Bacillus thuringiensis BMB171] gi|29895356|gb|AAP08643.1| Flagellar biosynthetic protein fliP [Bacillus cereus ATCC 14579] gi|74489154|gb|EAO52632.1| Flagellar biosynthetic protein fliP [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|118416424|gb|ABK84843.1| flagellar biosynthetic protein P [Bacillus thuringiensis str. Al Hakam] gi|218163765|gb|ACK63757.1| putative flagellar biosynthetic protein FliP [Bacillus cereus B4264] gi|218545099|gb|ACK97493.1| putative flagellar biosynthetic protein FliP [Bacillus cereus G9842] gi|225787593|gb|ACO27810.1| putative flagellar biosynthetic protein FliP [Bacillus cereus 03BB102] gi|296323419|gb|ADH06347.1| flagellar biosynthesis protein FliP [Bacillus thuringiensis BMB171] gi|326939379|gb|AEA15275.1| flagellar biosynthesis protein FliP [Bacillus thuringiensis serovar chinensis CT-43] Length = 252 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 64/210 (30%), Positives = 120/210 (57%), Gaps = 4/210 (1%) Query: 35 ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFM 94 S V+ F + T+LS++ ++++ T F F+IV I R G+G+ ++PPN V++ LALF+ Sbjct: 45 TSNSSVQLFALVTLLSLSSSIVLLFTHFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFL 104 Query: 95 TFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154 + + M P L + P+ +IT + A + A +M +T + DL + + + Sbjct: 105 SLFTMQPVLGQLKSDVWDPMTKEKITVSQAAETTAPIMKEYMSKHTYKHDLKMMLKVRGE 164 Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214 + L+PSF ++++++ G I L F+ ID+I++T++M +GMMM+ Sbjct: 165 ELPK----DLKDLSLFTLVPSFTLTQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMV 220 Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 PP +SLPFK++ FV + G++ +V+ + K+ Sbjct: 221 PPMILSLPFKILVFVYLGGYTKIVDIMFKT 250 >gi|206970774|ref|ZP_03231726.1| putative flagellar biosynthetic protein FliP [Bacillus cereus AH1134] gi|206734410|gb|EDZ51580.1| putative flagellar biosynthetic protein FliP [Bacillus cereus AH1134] Length = 252 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 64/210 (30%), Positives = 120/210 (57%), Gaps = 4/210 (1%) Query: 35 ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFM 94 S V+ F + T+LS++ ++++ T F F+IV I R G+G+ ++PPN V++ LALF+ Sbjct: 45 TSNSSVQLFALVTLLSLSSSIVLLFTHFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFL 104 Query: 95 TFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154 + + M P L + P+ +IT + A + A +M +T + DL + + + Sbjct: 105 SLFTMQPVLGQLKSDVWDPMTKEKITVSQAAETTAPIMKEYMSKHTYKHDLKMMLKVRGE 164 Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214 + L+PSF ++++++ G I L F+ ID+I++T++M +GMMM+ Sbjct: 165 ELPK----DLKDLSLFTLVPSFTLTQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMV 220 Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 PP +SLPFK++ FV + G++ +V+ + K+ Sbjct: 221 PPMILSLPFKILVFVYLGGYTKIVDIMFKT 250 >gi|301053304|ref|YP_003791515.1| flagellar biosynthesis protein [Bacillus anthracis CI] gi|300375473|gb|ADK04377.1| flagellar biosynthesis protein [Bacillus cereus biovar anthracis str. CI] Length = 252 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 64/210 (30%), Positives = 120/210 (57%), Gaps = 4/210 (1%) Query: 35 ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFM 94 S V+ F + T+LS++ ++++ T F F+IV I R G+G+ ++PPN V++ LALF+ Sbjct: 45 TSNSSVQLFALVTLLSLSSSIVLLFTHFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFL 104 Query: 95 TFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154 + + M P L + P+ +IT + A + A +M +T + DL + + + Sbjct: 105 SLFTMQPVLGQLKSDVWDPMTKEKITVSQAAETTAPIMKEYMSKHTYKHDLKMMLKVRGE 164 Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214 + L+PSF ++++++ G I L F+ ID+I++T++M +GMMM+ Sbjct: 165 ELPK----DLKDLSLFTLVPSFTLTQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMV 220 Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 PP +SLPFK++ FV + G++ +V+ + K+ Sbjct: 221 PPMILSLPFKILVFVYLGGYTKIVDIMFKT 250 >gi|30261770|ref|NP_844147.1| flagellar biosynthesis protein FliP [Bacillus anthracis str. Ames] gi|47527003|ref|YP_018352.1| flagellar biosynthesis protein FliP [Bacillus anthracis str. 'Ames Ancestor'] gi|49184604|ref|YP_027856.1| flagellar biosynthesis protein FliP [Bacillus anthracis str. Sterne] gi|65319047|ref|ZP_00392006.1| COG1338: Flagellar biosynthesis pathway, component FliP [Bacillus anthracis str. A2012] gi|165869274|ref|ZP_02213933.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis str. A0488] gi|167638785|ref|ZP_02397060.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis str. A0193] gi|170706438|ref|ZP_02896898.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis str. A0389] gi|177650630|ref|ZP_02933597.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis str. A0174] gi|190566255|ref|ZP_03019173.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis Tsiankovskii-I] gi|227815461|ref|YP_002815470.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis str. CDC 684] gi|229600042|ref|YP_002866159.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis str. A0248] gi|254734621|ref|ZP_05192333.1| flagellar biosynthesis protein FliP [Bacillus anthracis str. Western North America USA6153] gi|254755273|ref|ZP_05207307.1| flagellar biosynthesis protein FliP [Bacillus anthracis str. Vollum] gi|254759809|ref|ZP_05211833.1| flagellar biosynthesis protein FliP [Bacillus anthracis str. Australia 94] gi|30255998|gb|AAP25633.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis str. Ames] gi|47502151|gb|AAT30827.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis str. 'Ames Ancestor'] gi|49178531|gb|AAT53907.1| flagellar biosynthetic protein FliP, putative [Bacillus anthracis str. Sterne] gi|164714714|gb|EDR20232.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis str. A0488] gi|167513249|gb|EDR88620.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis str. A0193] gi|170128536|gb|EDS97403.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis str. A0389] gi|172083774|gb|EDT68834.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis str. A0174] gi|190562390|gb|EDV16357.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis Tsiankovskii-I] gi|227003763|gb|ACP13506.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis str. CDC 684] gi|229264450|gb|ACQ46087.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis str. A0248] Length = 252 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 64/210 (30%), Positives = 120/210 (57%), Gaps = 4/210 (1%) Query: 35 ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFM 94 S V+ F + T+LS++ ++++ T F F+IV I R G+G+ ++PPN V++ LALF+ Sbjct: 45 TSNSSVQLFALVTLLSLSSSIVLLFTHFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFL 104 Query: 95 TFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154 + + M P L + P+ +IT + A + A +M +T + DL + + + Sbjct: 105 SLFTMQPVLGQLKSDVWDPMTKEKITVSQAAETTAPIMKEYMSKHTYKHDLKMMLKVRGE 164 Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214 + L+PSF ++++++ G I L F+ ID+I++T++M +GMMM+ Sbjct: 165 ELPK----DLKDLSLFTLVPSFTLTQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMV 220 Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 PP +SLPFK++ FV + G++ +V+ + K+ Sbjct: 221 PPMILSLPFKILIFVYLGGYTKIVDIMFKT 250 >gi|46203617|ref|ZP_00051259.2| COG1338: Flagellar biosynthesis pathway, component FliP [Magnetospirillum magnetotacticum MS-1] Length = 210 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 65/186 (34%), Positives = 104/186 (55%), Gaps = 6/186 (3%) Query: 9 LFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIV 68 L L + A+S D+ + ++ + T+L++AP +L+M T F R ++V Sbjct: 19 LLLSSAGCALAQSVTLDL----GAGGTTERALQLVALITVLALAPSVLVMATAFTRIVVV 74 Query: 69 FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128 SILR+ +G + PPN VI+SLALF+T +VM+PT + GI+PLM QI+++ A +R Sbjct: 75 LSILRSALGTQTAPPNAVIVSLALFLTAFVMAPTAREAYRAGIEPLMAGQISQSQAFERA 134 Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188 + PF + R ++ S + + R I + + L P+FMI LRR+FEIG Sbjct: 135 SGPFQD-LHGAQRPREGSETVPRHGAPARPGRIQEAVGPGDQSL-PAFMIFGLRRAFEIG 192 Query: 189 FLIILP 194 FL+ +P Sbjct: 193 FLLFIP 198 >gi|222095389|ref|YP_002529449.1| flagellar biosynthesis protein flip [Bacillus cereus Q1] gi|221239447|gb|ACM12157.1| flagellar biosynthetic protein FliP [Bacillus cereus Q1] Length = 252 Score = 138 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 63/210 (30%), Positives = 120/210 (57%), Gaps = 4/210 (1%) Query: 35 ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFM 94 S V+ F + T+LS++ ++++ T F F+IV I R G+G+ ++PPN V++ LALF+ Sbjct: 45 TSNSSVQLFALVTLLSLSSSIVLLFTHFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFL 104 Query: 95 TFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154 + + M P L + P+ +IT + A + A +M +T + DL + + + Sbjct: 105 SLFTMQPVLGQLKSDVWDPMTKEKITVSQAAETTAPIMKEYMSKHTYKHDLKMMLKVRGE 164 Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214 + L+PSF ++++++ G I L F+ ID+I++T++M +GM+M+ Sbjct: 165 ELPK----DLKDLSLFTLVPSFTLTQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMLMV 220 Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 PP +SLPFK++ FV + G++ +V+ + K+ Sbjct: 221 PPMILSLPFKILVFVYLGGYTKIVDIMFKT 250 >gi|312958828|ref|ZP_07773347.1| type III secretion system rscR [Pseudomonas fluorescens WH6] gi|311286598|gb|EFQ65160.1| type III secretion system rscR [Pseudomonas fluorescens WH6] Length = 216 Score = 138 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 70/209 (33%), Positives = 117/209 (55%), Gaps = 2/209 (0%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + LS+ P+LLI+ T F + +IV I R +G+ VPP++ I +AL T ++M Sbjct: 8 LVLAMFLGALSLMPMLLIICTSFLKIVIVLMITRNAIGVQQVPPSMAINGIALAATLFIM 67 Query: 100 SPTLDRSIEM-GIQPL-MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +P E + PL ++N T P FM N L+ ++ Sbjct: 68 APVGYEIAESIKVSPLDLSNVQTVLQTGGEAIMPLRAFMLRNVDPDVLTHLLENTARLWP 127 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + + +LIP+F++S+L+ FEIGFLI +PF++ID+IV+ +++A+GM M+ P Sbjct: 128 AQMAEEVQREDLILLIPAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPM 187 Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +ISLP K++ FVL+ GWS L+++L S++ Sbjct: 188 TISLPLKLLLFVLVSGWSRLLDSLFLSYL 216 >gi|86157131|ref|YP_463916.1| type III secretion system protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85773642|gb|ABC80479.1| type III secretion system inner membrane P protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 225 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 75/218 (34%), Positives = 126/218 (57%), Gaps = 2/218 (0%) Query: 29 IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88 +P+ ++ + +L++ P L+M+T F + +V SI R+ +G VPPN V+ Sbjct: 7 VPSAGPVADRPAEMLVLLALLALVPAALVMLTSFLKISVVLSIARSALGAPQVPPNTVVT 66 Query: 89 SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET-TAIQRVAEPFWVFMRNNTREKDLSL 147 LAL +T VM+P +R+ + + T A+QR A P F+ R D + Sbjct: 67 GLALVLTLLVMAPVAERAAALARPAPGERGLPATLAALQRGAGPVKAFLARFARPDDRAA 126 Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 F+D+A R D + +L P+F++SELRR+F IGFL+ +PFL++D++++ +++ Sbjct: 127 FLDVARR-LRAPDAAAPADDDLAVLAPAFVVSELRRAFTIGFLVFVPFLVVDLVISNVLL 185 Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 A+G+ L PTS++LPFK++ FV +DGW LL L S+ Sbjct: 186 ALGLTQLSPTSVALPFKLLLFVAVDGWKLLARALALSY 223 >gi|197121155|ref|YP_002133106.1| type III secretion system protein [Anaeromyxobacter sp. K] gi|220915856|ref|YP_002491160.1| type III secretion system inner membrane P protein [Anaeromyxobacter dehalogenans 2CP-1] gi|196171004|gb|ACG71977.1| type III secretion system inner membrane P protein [Anaeromyxobacter sp. K] gi|219953710|gb|ACL64094.1| type III secretion system inner membrane P protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 225 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 70/189 (37%), Positives = 113/189 (59%), Gaps = 2/189 (1%) Query: 58 MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 M+T F + +V SI R+ +G VPPN V+ LAL +T VM+P +R+ + Sbjct: 36 MLTSFLKISVVLSIARSALGAPQVPPNTVVTGLALVLTMLVMAPVAERAAALARPAPGER 95 Query: 118 QITET-TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176 + + A+QR A P F+ R D + F+D+A R D + +L P+F Sbjct: 96 GLAASLAALQRGAGPVKAFLARFARPDDRAAFLDVARR-LRAPDAAPPADDDLAVLAPAF 154 Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236 ++SELRR+F IGFL+ +PFL++D++++ +++A+G+ L PTS++LPFK++ FV +DGW L Sbjct: 155 VVSELRRAFTIGFLVFVPFLVVDLVISNVLLALGLTQLSPTSVALPFKLLLFVAVDGWKL 214 Query: 237 LVENLVKSF 245 L L S+ Sbjct: 215 LARALALSY 223 >gi|76097667|gb|ABA39515.1| flagellar protein [Paenibacillus larvae subsp. larvae] Length = 140 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 64/144 (44%), Positives = 101/144 (70%), Gaps = 4/144 (2%) Query: 87 IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146 ++ LALF T ++M+PTL ++ +QP + ++ +T A+++ AEP FM ++TR KDL Sbjct: 1 LVGLALFPTLFIMAPTLGDINQVAVQPYIKGELNQTQALEKAAEPIKKFMWSHTRPKDLQ 60 Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206 LF+D +++ N + L+P+F ISEL+ +F++GF+I +PFL+IDMI+++ + Sbjct: 61 LFLDYSNAEKPN----GPEDTPIAALVPAFAISELKTAFQMGFMIFIPFLVIDMIISSTL 116 Query: 207 MAMGMMMLPPTSISLPFKVIFFVL 230 MAMGMMMLPP ISLPFK++ FVL Sbjct: 117 MAMGMMMLPPVMISLPFKILLFVL 140 >gi|73532640|dbj|BAE19878.1| type III secretion apparatus [Edwardsiella tarda] Length = 171 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 54/170 (31%), Positives = 91/170 (53%), Gaps = 1/170 (0%) Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRS-IEMGIQPLMNNQITETTAIQRVAEPFWVF 135 G P N+ + LAL +T ++M+P + P +P+ F Sbjct: 1 GYSRSPRNIALYGLALILTLFIMTPVGTAVQARLADAPAEAQTTLLARLSDNTLDPYRQF 60 Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195 +R +T L F +A S + + +L+P+F +S+L +F+IG L+ LPF Sbjct: 61 LRQHTSATQLHFFRQVATKSWPASVREQISDDSLLLLMPAFAVSQLVEAFQIGLLLFLPF 120 Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 + ID+IV+ I++AMGMMM+ P +IS+PFK++ F+L+ GW L+ L+ S+ Sbjct: 121 IAIDLIVSNILLAMGMMMVSPMTISMPFKLLVFILVGGWDKLLGQLLLSY 170 >gi|12082757|gb|AAG48604.1|AF306650_1 SpaP [Sodalis glossinidius] Length = 189 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 44/176 (25%), Positives = 94/176 (53%), Gaps = 3/176 (1%) Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQP--LMNNQITETTAIQRVAEP 131 G+ VP NL + +AL + ++M P + + + + + ++ E Sbjct: 1 NAFGLQQVPSNLTLNGIALMLAMFIMGPIAGDAYNAYQEQPVALGSAASVLEFLENSMES 60 Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIE-YRILIPSFMISELRRSFEIGFL 190 + +++ + F D + H L+P++ +SE++ SF IGF Sbjct: 61 YRHYLQKYADPRLTEFFDRAHGGGGAAHDAPASGHAPSMLALLPAYALSEIKDSFRIGFY 120 Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 + LPF+++D++++++++A+GMMM+ P ++S+P K++ FV++DGW+LL + LV ++ Sbjct: 121 LYLPFVVVDLLISSVLLALGMMMMSPITLSVPIKLVLFVMLDGWTLLSQGLVLQYL 176 >gi|170690582|ref|ZP_02881749.1| Yop virulence translocation R [Burkholderia graminis C4D1M] gi|170145017|gb|EDT13178.1| Yop virulence translocation R [Burkholderia graminis C4D1M] Length = 164 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 48/163 (29%), Positives = 97/163 (59%), Gaps = 2/163 (1%) Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTRE 142 +V+ +A+ ++ YVM+P +++ + Q T+ EPF F++ +T E Sbjct: 1 MVLNGVAILVSLYVMAPGRHAAMQSMQGQTIAGQPTQALIQVFSAAREPFRTFLQKHTNE 60 Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202 ++ F+ A+ + + +L P+F ++EL +F+IGFL+ + F++ID+I+ Sbjct: 61 REKRFFIRSANVVWPKDAASSLHENDLIVLAPAFTLTELTDAFKIGFLLYIAFIVIDLII 120 Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 A +++AMG+ + PT++++PFK++ FV++DGWS L+ LV ++ Sbjct: 121 ANVLLAMGLNQVTPTNVAIPFKLLLFVVMDGWSTLIHGLVMTY 163 >gi|229011059|ref|ZP_04168253.1| Flagellar biosynthetic protein FliP [Bacillus mycoides DSM 2048] gi|228750231|gb|EEM00063.1| Flagellar biosynthetic protein FliP [Bacillus mycoides DSM 2048] Length = 177 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 55/179 (30%), Positives = 103/179 (57%), Gaps = 4/179 (2%) Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 +IV I R G+G+ ++PPN V++ LALF++ + M P L + P+ +IT + A Sbjct: 1 MIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKITVSQAA 60 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185 + A +M +T + DL + + + + L+PSF ++++++ Sbjct: 61 ETTAPIMKDYMSKHTYKHDLKMMLKVRGEELPK----DLKDLSLFTLVPSFTLTQIQKGL 116 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 G I L F+ ID+I++T++M +GMMM+PP+ +SLPFK++ FV + G++ +V+ + K+ Sbjct: 117 LTGMFIYLAFVFIDLIISTLLMYLGMMMVPPSILSLPFKILVFVYLGGYTKIVDIMFKT 175 >gi|229160728|ref|ZP_04288720.1| Flagellar biosynthetic protein FliP [Bacillus cereus R309803] gi|228622743|gb|EEK79577.1| Flagellar biosynthetic protein FliP [Bacillus cereus R309803] Length = 177 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 56/179 (31%), Positives = 102/179 (56%), Gaps = 4/179 (2%) Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 +IV I R G+G+ ++PPN V++ LALF++ + M P L + P+ QIT + A Sbjct: 1 MIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEQITVSQAA 60 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185 + A +M +T + DL + + + + L+PSF ++++++ Sbjct: 61 ETTAPIMKDYMSKHTYKHDLKMMLKVRGEELPK----DLKDLSLFTLVPSFTLTQIQKGL 116 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 G I L F+ ID+I++T++M +GMMM+PP +SLPFK++ FV + G++ +V+ + K+ Sbjct: 117 LTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIVDIMFKT 175 >gi|229017052|ref|ZP_04173971.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH1273] gi|229023233|ref|ZP_04179743.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH1272] gi|228738027|gb|EEL88513.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH1272] gi|228744225|gb|EEL94308.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH1273] Length = 177 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 55/179 (30%), Positives = 102/179 (56%), Gaps = 4/179 (2%) Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 +IV I R G+G+ ++PPN V++ LALF++ + M P L + P+ +IT + A Sbjct: 1 MIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKITVSQAA 60 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185 + A +M +T + DL + + + + L+PSF ++++++ Sbjct: 61 ETTAPIMKDYMSKHTYKHDLKMMLKVRGEELPK----DLKDLSLFTLVPSFTLTQIQKGL 116 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 G I L F+ ID+I++T++M +GMMM+PP +SLPFK++ FV + G++ +V+ + K+ Sbjct: 117 LTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIVDIMFKT 175 >gi|229058415|ref|ZP_04196799.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH603] gi|229132594|ref|ZP_04261442.1| Flagellar biosynthetic protein FliP [Bacillus cereus BDRD-ST196] gi|229166621|ref|ZP_04294373.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH621] gi|228616875|gb|EEK73948.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH621] gi|228650826|gb|EEL06813.1| Flagellar biosynthetic protein FliP [Bacillus cereus BDRD-ST196] gi|228719924|gb|EEL71514.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH603] Length = 177 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 55/179 (30%), Positives = 102/179 (56%), Gaps = 4/179 (2%) Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 +IV I R G+G+ ++PPN V++ LALF++ + M P L + P+ +IT + A Sbjct: 1 MIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKITVSQAA 60 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185 + A +M +T + DL + + + + L+PSF ++++++ Sbjct: 61 ETTAPIMKDYMSKHTYKHDLKMMLKVRGEELPK----DLKDLSLFTLVPSFTLTQIQKGL 116 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 G I L F+ ID+I++T++M +GMMM+PP +SLPFK++ FV + G++ +V+ + K+ Sbjct: 117 LTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIVDIMFKT 175 >gi|229096251|ref|ZP_04227224.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock3-29] gi|229102365|ref|ZP_04233073.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock3-28] gi|229115206|ref|ZP_04244616.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock1-3] gi|228668346|gb|EEL23778.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock1-3] gi|228681012|gb|EEL35181.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock3-28] gi|228687211|gb|EEL41116.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock3-29] Length = 177 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 56/179 (31%), Positives = 102/179 (56%), Gaps = 4/179 (2%) Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 +IV I R G+G+ ++PPN V++ LALF++ + M P L + P+ QIT + A Sbjct: 1 MIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEQITVSQAA 60 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185 + A +M +T + DL + + + + L+PSF ++++++ Sbjct: 61 ETTAPIMKDYMAKHTYKHDLKMMLKVRGEELPK----DLKDLSLFTLVPSFTLTQIQKGL 116 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 G I L F+ ID+I++T++M +GMMM+PP +SLPFK++ FV + G++ +V+ + K+ Sbjct: 117 LTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIVDIMFKT 175 >gi|228900348|ref|ZP_04064577.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis IBL 4222] gi|228907399|ref|ZP_04071257.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis IBL 200] gi|228914344|ref|ZP_04077959.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228920476|ref|ZP_04083821.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228926802|ref|ZP_04089870.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228933050|ref|ZP_04095913.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228938879|ref|ZP_04101479.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228945369|ref|ZP_04107724.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228952149|ref|ZP_04114241.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228958047|ref|ZP_04119782.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar pakistani str. T13001] gi|228964750|ref|ZP_04125857.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar sotto str. T04001] gi|228971760|ref|ZP_04132381.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978369|ref|ZP_04138746.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis Bt407] gi|228984851|ref|ZP_04145021.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229029446|ref|ZP_04185529.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH1271] gi|229043522|ref|ZP_04191231.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH676] gi|229069317|ref|ZP_04202607.1| Flagellar biosynthetic protein FliP [Bacillus cereus F65185] gi|229078948|ref|ZP_04211500.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock4-2] gi|229090729|ref|ZP_04221962.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock3-42] gi|229109222|ref|ZP_04238821.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock1-15] gi|229121318|ref|ZP_04250549.1| Flagellar biosynthetic protein FliP [Bacillus cereus 95/8201] gi|229127093|ref|ZP_04256090.1| Flagellar biosynthetic protein FliP [Bacillus cereus BDRD-Cer4] gi|229138466|ref|ZP_04267055.1| Flagellar biosynthetic protein FliP [Bacillus cereus BDRD-ST26] gi|229149971|ref|ZP_04278197.1| Flagellar biosynthetic protein FliP [Bacillus cereus m1550] gi|229155337|ref|ZP_04283447.1| Flagellar biosynthetic protein FliP [Bacillus cereus ATCC 4342] gi|229172412|ref|ZP_04299971.1| Flagellar biosynthetic protein FliP [Bacillus cereus MM3] gi|229178174|ref|ZP_04305545.1| Flagellar biosynthetic protein FliP [Bacillus cereus 172560W] gi|229183958|ref|ZP_04311173.1| Flagellar biosynthetic protein FliP [Bacillus cereus BGSC 6E1] gi|229189864|ref|ZP_04316874.1| Flagellar biosynthetic protein FliP [Bacillus cereus ATCC 10876] gi|229195978|ref|ZP_04322731.1| Flagellar biosynthetic protein FliP [Bacillus cereus m1293] gi|228587537|gb|EEK45602.1| Flagellar biosynthetic protein FliP [Bacillus cereus m1293] gi|228593538|gb|EEK51347.1| Flagellar biosynthetic protein FliP [Bacillus cereus ATCC 10876] gi|228599483|gb|EEK57088.1| Flagellar biosynthetic protein FliP [Bacillus cereus BGSC 6E1] gi|228605304|gb|EEK62754.1| Flagellar biosynthetic protein FliP [Bacillus cereus 172560W] gi|228610883|gb|EEK68146.1| Flagellar biosynthetic protein FliP [Bacillus cereus MM3] gi|228628052|gb|EEK84769.1| Flagellar biosynthetic protein FliP [Bacillus cereus ATCC 4342] gi|228633493|gb|EEK90096.1| Flagellar biosynthetic protein FliP [Bacillus cereus m1550] gi|228645003|gb|EEL01246.1| Flagellar biosynthetic protein FliP [Bacillus cereus BDRD-ST26] gi|228656209|gb|EEL12050.1| Flagellar biosynthetic protein FliP [Bacillus cereus BDRD-Cer4] gi|228662163|gb|EEL17772.1| Flagellar biosynthetic protein FliP [Bacillus cereus 95/8201] gi|228674232|gb|EEL29477.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock1-15] gi|228692671|gb|EEL46397.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock3-42] gi|228704362|gb|EEL56796.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock4-2] gi|228713804|gb|EEL65689.1| Flagellar biosynthetic protein FliP [Bacillus cereus F65185] gi|228725744|gb|EEL76992.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH676] gi|228731905|gb|EEL82804.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH1271] gi|228774801|gb|EEM23197.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228781386|gb|EEM29587.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis Bt407] gi|228787850|gb|EEM35808.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228795000|gb|EEM42499.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar sotto str. T04001] gi|228801564|gb|EEM48446.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar pakistani str. T13001] gi|228807503|gb|EEM54030.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228814341|gb|EEM60607.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228820728|gb|EEM66753.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228826651|gb|EEM72422.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832915|gb|EEM78484.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228839106|gb|EEM84402.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228845338|gb|EEM90374.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228852260|gb|EEM97056.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis IBL 200] gi|228859235|gb|EEN03666.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis IBL 4222] Length = 177 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 55/179 (30%), Positives = 102/179 (56%), Gaps = 4/179 (2%) Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 +IV I R G+G+ ++PPN V++ LALF++ + M P L + P+ +IT + A Sbjct: 1 MIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKITVSQAA 60 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185 + A +M +T + DL + + + + L+PSF ++++++ Sbjct: 61 ETTAPIMKEYMSKHTYKHDLKMMLKVRGEELPK----DLKDLSLFTLVPSFTLTQIQKGL 116 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 G I L F+ ID+I++T++M +GMMM+PP +SLPFK++ FV + G++ +V+ + K+ Sbjct: 117 LTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIVDIMFKT 175 >gi|229144379|ref|ZP_04272784.1| Flagellar biosynthetic protein FliP [Bacillus cereus BDRD-ST24] gi|228639010|gb|EEK95435.1| Flagellar biosynthetic protein FliP [Bacillus cereus BDRD-ST24] Length = 177 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 55/179 (30%), Positives = 102/179 (56%), Gaps = 4/179 (2%) Query: 66 IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125 +IV I R G+G+ ++PPN V++ LALF++ + M P L + P+ +IT + A Sbjct: 1 MIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKITVSQAA 60 Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185 + A +M +T + DL + + + + L+PSF ++++++ Sbjct: 61 ETTAPIMKEYMSKHTYKHDLKMMLKVRGEQLPK----DLKDLSLFTLVPSFTLTQIQKGL 116 Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244 G I L F+ ID+I++T++M +GMMM+PP +SLPFK++ FV + G++ +V+ + K+ Sbjct: 117 LTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIVDIMFKT 175 >gi|333008529|gb|EGK27998.1| putative type III secretion apparatus integral membrane protein component [Shigella flexneri K-218] gi|333017443|gb|EGK36759.1| surface presentation of antigens protein spaP [Shigella flexneri K-227] gi|333020359|gb|EGK39623.1| putative type III secretion apparatus integral membrane protein component [Shigella flexneri K-304] Length = 167 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 44/164 (26%), Positives = 97/164 (59%), Gaps = 3/164 (1%) Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQ-PLMNNQITETTAI-QRVAEPFWVFMRNNTRE 142 + + +AL M +VM P ++ E + P + I++ + +++ +T Sbjct: 1 MTLNGIALIMALFVMKPIIEAGYENYLNGPQKFDTISDIVRFSDSGLMEYKQYLKKHTDL 60 Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202 + L+ F + + + +N+ L+P++ +SE++ +F+IGF + LPF+++D+++ Sbjct: 61 E-LARFFQRSEEENADLKSAENNDYSLFSLLPAYALSEIKDAFKIGFYLYLPFVVVDLVI 119 Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 ++I++A+GMMM+ P +IS+P K++ FV +DGW +L + L++ +I Sbjct: 120 SSILLALGMMMMSPITISVPIKLVLFVALDGWGILSKALIEQYI 163 >gi|179741187|gb|ACB86708.1| HrcR [Dyella japonica] Length = 154 Score = 125 bits (313), Expect = 6e-27, Method: Composition-based stats. Identities = 43/154 (27%), Positives = 87/154 (56%), Gaps = 2/154 (1%) Query: 77 GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWV 134 G+ VPPN+V+ +A+ ++ Y+M+P ++ + ++ Q T+ EPF + Sbjct: 1 GVQQVPPNMVLNGIAILVSLYIMAPIGMQAAQSLQGQQIDGQPTQALIQVFSAAREPFRL 60 Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194 F+ + E++ F+ A + +L P+F +SEL +F+IGFL+ + Sbjct: 61 FLEKHAHEREKRFFIRSASVVWPKEAARALHENDMIVLAPAFTLSELTDAFKIGFLLYIA 120 Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 F++ID+I+A +++AMG+ + PT++++P K++ F Sbjct: 121 FIVIDLIIANVLLAMGLNQVQPTNVAIPLKLLLF 154 >gi|179742375|gb|ACB86738.1| HrcR [uncultured soil bacterium] Length = 155 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 56/155 (36%), Positives = 91/155 (58%), Gaps = 2/155 (1%) Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFW 133 +G+ VPPN+V+ LAL M+ YVM P G++ + + + A EP Sbjct: 1 IGVQQVPPNVVLNGLALVMSVYVMYPVGTEMGARMQGLKDIGGSTQSMLKAADSAKEPLR 60 Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193 F+ ++R + FM A + + ++ +++P+F +SEL +FEIGFLI L Sbjct: 61 EFLVKHSRPLERGFFMKTAQKALKPEQAATLTDRDFLVIVPAFTVSELSVAFEIGFLIFL 120 Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 PFL+ID++++ I+MAMGMMML PT++S+P K++ F Sbjct: 121 PFLVIDLVISNILMAMGMMMLSPTTVSMPLKLLLF 155 >gi|179741073|gb|ACB86704.1| HrcR [Burkholderia cepacia] Length = 157 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 87/155 (56%), Gaps = 3/155 (1%) Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTL---DRSIEMGIQPLMNNQITETTAIQRVAEPF 132 +G+ VPPN+V+ +A+ ++ YV++P R++ P + A EPF Sbjct: 3 IGVQQVPPNMVLNGIAILVSAYVLAPVAIAASRNLPTDRPPANRVRRRWMQAFSAAREPF 62 Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192 F+ + +++ F+ A ++ + +L P+F ++EL +F+IGFL+ Sbjct: 63 RTFLEAHAHQRERRFFVRSAAMVWPKDVASELKDTDLFVLAPAFTLTELTEAFKIGFLLY 122 Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227 + F+++D+I+A +++AMG+ + PT++++PFK++ Sbjct: 123 VAFIVVDLIIANVLLAMGLNQVQPTNVAIPFKLLL 157 >gi|179742716|gb|ACB86743.1| HrcR [uncultured soil bacterium] Length = 160 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 50/156 (32%), Positives = 83/156 (53%), Gaps = 2/156 (1%) Query: 74 TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEM-GIQPLMNNQITETTA-IQRVAEP 131 + +G+ VPPN+ +AL T +VM+P + PL A V EP Sbjct: 5 SDLGVQQVPPNMATHGIALAATMFVMAPVAHEIQQRVHDHPLEMGSTDRLQASANTVIEP 64 Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191 FM NT ++ +D + + + +P+F++SEL+ F+IGFLI Sbjct: 65 LQRFMTRNTDPDVIAHLLDNTQRMWPKDMADQASKSDLLLAVPAFVLSELQAGFQIGFLI 124 Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227 +PF++ID+IV+ +++A+GM M+ P +ISLPFK++ Sbjct: 125 YIPFIVIDLIVSNLLLALGMQMVSPMTISLPFKLLL 160 >gi|179741780|gb|ACB86726.1| HrcR [uncultured soil bacterium] Length = 157 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 87/155 (56%), Gaps = 2/155 (1%) Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFW 133 +G+ VPPN+V+ +A+ ++ Y+ +P +++ Q N T I EPF Sbjct: 1 IGVQQVPPNMVLNGIAIIVSVYITAPVAFSAMQGMQANQAPGNVTQNVTAGIAAAREPFR 60 Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193 F++ + + ++ F+ A + + +L P+F ++EL +F+IGFL+ + Sbjct: 61 TFLKAHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTDAFKIGFLLYI 120 Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 F+++D+++A ++MAMG+ + PT++++P K++ F Sbjct: 121 GFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 155 >gi|179742187|gb|ACB86736.1| HrcR [uncultured soil bacterium] Length = 155 Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 43/155 (27%), Positives = 88/155 (56%), Gaps = 2/155 (1%) Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFW 133 +G+ VPPN+V+ +A+ ++ Y+M+P +++ Q N T I EPF Sbjct: 1 IGVQQVPPNMVLNGIAIIVSVYIMAPVAFSAMQGMQANQAPGNVTQNVTAGIAAAREPFR 60 Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193 F+ + + ++ F+ A + + +L P+F ++EL +F+IGFL+ + Sbjct: 61 TFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTDAFKIGFLLYI 120 Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 F+++D+++A ++MAMG+ + PT++++PFK++ F Sbjct: 121 GFIVVDLVIANVLMAMGLNQVQPTNVAIPFKLLLF 155 >gi|331654351|ref|ZP_08355351.1| surface presentation of antigens secretory protein [Escherichia coli M718] gi|331047733|gb|EGI19810.1| surface presentation of antigens secretory protein [Escherichia coli M718] Length = 172 Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 92/165 (55%), Gaps = 4/165 (2%) Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTRE 142 + + +AL ++ +VM P + NN + ++ + ++ + Sbjct: 1 MTLNGVALLLSMFVMMPVGKEIYNNSHNENLSFNNVASVVNFVETGMSGYKSYLIKYSEP 60 Query: 143 KDLSLFMDMAHS--SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200 + +S F + S N +I +D+I L+P++ +SE++ +F IGF I LPF+++D+ Sbjct: 61 ELVSFFEKIQKVNGSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDL 120 Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +++++++ +GMMM+ P +IS P K+I FV +DGW++L + L+ + Sbjct: 121 VISSVLLTLGMMMMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 165 >gi|179741593|gb|ACB86720.1| HrcR [uncultured soil bacterium] Length = 157 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 2/155 (1%) Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFW 133 +G+ VPPN+V+ +A+ ++ Y+M+P +++ Q N T I EPF Sbjct: 1 IGVQQVPPNMVLNGIAIIVSVYIMAPVAFSAMQGMQANQAPGNVTQNVTAGITAAREPFR 60 Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193 F+ + + ++ F+ A + + +L P+F ++EL +F+IGFL+ + Sbjct: 61 TFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTDAFKIGFLLYI 120 Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 F+++D+++A ++MAMG+ + PT++++P K++ F Sbjct: 121 GFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 155 >gi|324119902|gb|EGC13781.1| FliP family protein [Escherichia coli E1167] Length = 172 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 94/165 (56%), Gaps = 4/165 (2%) Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTRE 142 + + +AL ++ +VM P + NN + ++ + ++ + Sbjct: 1 MTLNGVALLLSMFVMMPVGKEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEP 60 Query: 143 KDLSLFMDMA--HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200 + +S F + +SS N +I +D+I L+P++ +SE++ +F IGF I LPF+++D+ Sbjct: 61 ELVSFFEKIQKVNSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDL 120 Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +++++++ +GMMM+ P +IS P K+I FV +DGW++L + L+ + Sbjct: 121 VISSVLLTLGMMMMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 165 >gi|179741249|gb|ACB86709.1| HrcR [uncultured soil bacterium] Length = 157 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 86/155 (55%), Gaps = 2/155 (1%) Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFW 133 +G+ VPPN+V+ +A+ ++ Y+M+P +++ Q N T I PF Sbjct: 1 IGVQQVPPNMVLNGIAIIVSVYIMAPVAFSAMQGMQANQAPGNVTQNVTAGIAAARVPFR 60 Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193 F+ + + + F+ A + + +L P+F ++EL +F+IGFL+ + Sbjct: 61 TFLEAHAQSCERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTDAFKIGFLLYI 120 Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 F+++D+++A ++MAMG+ + PT++++PFK++ F Sbjct: 121 GFIVVDLVIANVLMAMGLNQVQPTNVAIPFKLLLF 155 >gi|179742060|gb|ACB86734.1| HrcR [uncultured soil bacterium] Length = 157 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 86/155 (55%), Gaps = 2/155 (1%) Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFW 133 +G+ VPPN+V+ +A+ ++ Y+M+P +++ Q N T I EPF Sbjct: 1 IGVQQVPPNMVLNGIAIIVSVYIMAPVAFSAMQGMQANQAPGNVTQNVTAGIAAAREPFR 60 Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193 F+ + + ++ F+ A + + +L P+F ++EL +F+IGFL+ + Sbjct: 61 TFLEAHAKSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTDAFKIGFLLYI 120 Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 F+++D+++A ++MAMG+ PT++++P K++ F Sbjct: 121 GFIVVDLVIANVLMAMGLNQAQPTNVAIPLKLLLF 155 >gi|179741622|gb|ACB86721.1| HrcR [uncultured soil bacterium] Length = 157 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 87/155 (56%), Gaps = 2/155 (1%) Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFW 133 +G+ VPPN+V+ +A+ ++ ++M+P +++ Q N T I EPF Sbjct: 1 IGVQQVPPNMVLNGIAIIVSVHIMAPVAFSAMQGMQANQAPGNVTQNVTAGIAAAREPFR 60 Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193 F+ + + ++ F+ A + + +L P+F ++EL +F+IGFL+ + Sbjct: 61 TFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTDAFKIGFLLYI 120 Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 F+++D+++A ++MAMG+ + PT++++P K++ F Sbjct: 121 GFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 155 >gi|331643550|ref|ZP_08344681.1| surface presentation of antigens secretory protein [Escherichia coli H736] gi|331037021|gb|EGI09245.1| surface presentation of antigens secretory protein [Escherichia coli H736] Length = 172 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 94/165 (56%), Gaps = 4/165 (2%) Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTRE 142 + + +AL ++ +VM P + NN + ++ + ++ + Sbjct: 1 MTLNGVALLLSMFVMMPVGKEIYYNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEP 60 Query: 143 KDLSLFMDMA--HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200 + ++ F + +SS N +I +D+I L+P++ +SE++ +F IGF I LPF+++D+ Sbjct: 61 ELVNFFEKIQKVNSSEDNEEIFDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDL 120 Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +++++++ +GMMM+ P +IS P K+I FV +DGW++L + L+ + Sbjct: 121 VISSVLLTLGMMMMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 165 >gi|323155908|gb|EFZ42075.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia coli EPECa14] Length = 195 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 50/180 (27%), Positives = 96/180 (53%), Gaps = 4/180 (2%) Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92 ++I + + +F +LS+ PI +++ T F + IV IL+ +G+ VPPN+ + S++L Sbjct: 5 MTIGSQPIFLIIVFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSL 64 Query: 93 FMTFYVMSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 +T ++MSP + + + Q +N + +++ P+ F+ NT ++++ F Sbjct: 65 ILTMFIMSPIILQINDNISQEPINYTDSDFFQKVDEKILSPYRGFLEKNTEKENVEFFER 124 Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 A N I K D IL+P+F + +L +F+IGFL+ LPF+ I ++ +G Sbjct: 125 AAQKKLGNETILKKD--SLFILLPAFTMGQLEAAFKIGFLLYLPFIAIRFDHFQYLIGLG 182 >gi|225181597|ref|ZP_03735038.1| type III secretion system inner membrane P protein [Dethiobacter alkaliphilus AHT 1] gi|225167705|gb|EEG76515.1| type III secretion system inner membrane P protein [Dethiobacter alkaliphilus AHT 1] Length = 131 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 44/125 (35%), Positives = 68/125 (54%), Gaps = 4/125 (3%) Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 +T F R ++V +R + PPN VII LALF+TF++M+P R E I P + ++ Sbjct: 1 MTSFTRIVVVLGFVRNALATQQTPPNRVIIGLALFLTFFIMAPIYSRVNETAILPSLEDE 60 Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178 IT A+ + P FM T EK L LF++++ T D + +L+P+F+I Sbjct: 61 ITSEYALATRSPPLERFMVQQTTEKVLPLFVNLSDGERPETM----DDLPMHVLVPAFVI 116 Query: 179 SELRR 183 SEL+ Sbjct: 117 SELKT 121 >gi|179741127|gb|ACB86706.1| HrcR [Burkholderia terrae] Length = 155 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 88/155 (56%), Gaps = 2/155 (1%) Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFW 133 +G+ VPPN+V+ +A+ ++ Y+M+P +++ Q N T I EPF Sbjct: 1 IGVQQVPPNMVLNGIAIIVSVYIMAPVAFSAMQGMQANQAPGNVTQNVTAGIAAAREPFR 60 Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193 F+ + + ++ F+ A + + +L P+F ++EL +F+IGFL+ + Sbjct: 61 TFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTDAFKIGFLLYI 120 Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 F+++++++A ++MAMG+ + PT++++PFK++ F Sbjct: 121 GFIVVNLVIANVLMAMGLNQVQPTNVAIPFKLLLF 155 >gi|179741398|gb|ACB86714.1| HrcR [uncultured soil bacterium] gi|179741939|gb|ACB86730.1| HrcR [uncultured soil bacterium] Length = 159 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 56/158 (35%), Positives = 93/158 (58%), Gaps = 6/158 (3%) Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE-----MGIQPLMNNQITETTAIQRVAE 130 +G+ VPPN+V+ LAL +T YVM P R + G+ + ++ E Sbjct: 3 IGVQQVPPNIVLNGLALVLTLYVMQPVGARMADAVGGANGLAGVTSSTGNMMETANLAKE 62 Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190 P F+ ++R + + F+ A + +D ++ I +P+F+++EL +F+IGFL Sbjct: 63 PLREFLLKHSRPNERAFFLRTAQRVDPARSVEMSDR-DFVITVPAFVVNELSVAFQIGFL 121 Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 I LPFL+ID++++ I++AMGMMML PT+ISLP K++ F Sbjct: 122 IFLPFLVIDLVISNILLAMGMMMLSPTTISLPLKLLLF 159 >gi|179741982|gb|ACB86732.1| HrcR [uncultured soil bacterium] Length = 159 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 55/158 (34%), Positives = 93/158 (58%), Gaps = 6/158 (3%) Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE-----MGIQPLMNNQITETTAIQRVAE 130 +G+ VPPN+V+ LAL +T YVM P R + G+ + ++ E Sbjct: 1 IGVQQVPPNIVLNGLALVLTLYVMQPVGARMADAVGGANGLAGVTSSTGNMMETANLAKE 60 Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190 P F+ +++ + + F+ A + +D ++ I +P+F+++EL +F+IGFL Sbjct: 61 PLREFLLKHSQPNERAFFLRTAQRVDPARSVEMSDR-DFVITVPAFVVNELSVAFQIGFL 119 Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 I LPFL+ID++++ I++AMGMMML PT+ISLP K++ F Sbjct: 120 IFLPFLVIDLVISNILLAMGMMMLSPTTISLPLKLLLF 157 >gi|179741717|gb|ACB86724.1| HrcR [uncultured soil bacterium] Length = 158 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 83/155 (53%), Gaps = 2/155 (1%) Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFW 133 +G+ VPPN+V+ +A+ + P +++ Q N T I EPF Sbjct: 2 IGVQQVPPNMVLNGIAIIVLASPTPPVAFSAMQGKQANQAPGNVTQNVTAGIAAAREPFC 61 Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193 F+ + + ++ F+ A + + +L P+F ++EL +F+IGFL+ + Sbjct: 62 TFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTDAFKIGFLLYI 121 Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 F+++D+++A ++MAMG+ + PT++++PFK++ F Sbjct: 122 GFIVVDLVIANVLMAMGLNQVQPTNVAIPFKLLLF 156 >gi|179742029|gb|ACB86733.1| HrcR [uncultured soil bacterium] Length = 157 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 2/155 (1%) Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFW 133 +G+ VPPN+V+ +A+ ++ Y+M+P +++ Q N T I EPF Sbjct: 1 IGVQQVPPNMVLNGIAIIVSVYIMAPVAFSAMQGMQANQAPGNVTQNVTAGIAAAREPFR 60 Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193 F+ + + ++ F+ A + + +L P+F ++EL +F+IGFL+ + Sbjct: 61 TFLEVHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTGAFKIGFLLYI 120 Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 F+++D+++A ++MAMG+ + PT++++P K++ F Sbjct: 121 GFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 155 >gi|229529208|ref|ZP_04418598.1| surface presentation of antigens protein SpaP [Vibrio cholerae 12129(1)] gi|229332982|gb|EEN98468.1| surface presentation of antigens protein SpaP [Vibrio cholerae 12129(1)] Length = 228 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 52/197 (26%), Positives = 91/197 (46%), Gaps = 12/197 (6%) Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114 I T F ++ IV +I++ +G +PP +V+ LA M + P + IE I+P Sbjct: 33 FFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNGVWPQIQPGIER-IKPY 91 Query: 115 MNNQITETTAIQ-RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT---------KN 164 + Q + + P V M + E + H+ + +T Sbjct: 92 FSQQKKQELNQEINNDLPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLTAIIELPFNFDK 151 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 +H ++ I S +I +L + FE+G + + F+ ID ++A ++ +GM ML PT IS P K Sbjct: 152 EHDTFKYFIGS-LIYDLYQGFELGLKLYIVFVSIDFLIAVVLSGVGMTMLSPTVISTPVK 210 Query: 225 VIFFVLIDGWSLLVENL 241 + F D W++L + L Sbjct: 211 LAVFYFSDSWTILFKAL 227 >gi|254511334|ref|ZP_05123401.1| flagellar biosynthetic protein FliP [Rhodobacteraceae bacterium KLH11] gi|221535045|gb|EEE38033.1| flagellar biosynthetic protein FliP [Rhodobacteraceae bacterium KLH11] Length = 146 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 64/148 (43%), Positives = 93/148 (62%), Gaps = 3/148 (2%) Query: 99 MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 M P + E GIQP++ + A++R PF FM D F MA Sbjct: 1 MEPVFSEAWEAGIQPMVEETLDVEPALERALVPFRSFMAARL---DADTFQAMAALRPDG 57 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 T + + +L+PSFM+SE+ R+F+IGFLI LPFLIID++VA ++M+MGMMM+PP + Sbjct: 58 TQMQLSPEAPLSVLMPSFMLSEIARAFQIGFLIFLPFLIIDLVVAAVLMSMGMMMVPPAT 117 Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +SLPFK+ FFV+ DGW+L+ LV+S++ Sbjct: 118 VSLPFKLAFFVIADGWALIASALVRSYV 145 >gi|229515154|ref|ZP_04404614.1| surface presentation of antigens protein SpaP [Vibrio cholerae TMA 21] gi|229347859|gb|EEO12818.1| surface presentation of antigens protein SpaP [Vibrio cholerae TMA 21] Length = 228 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 53/197 (26%), Positives = 91/197 (46%), Gaps = 12/197 (6%) Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114 I T F ++ IV +I++ +G +PP +V+ LA M + P + IE I+P Sbjct: 33 FFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNGVWPQIQPGIER-IKPY 91 Query: 115 MNNQITETTAIQ-RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT---------KN 164 + Q + + P V M + E + H+ + +T Sbjct: 92 FSQQEKQELNQEINNDLPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLTAIIELPFNFDK 151 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 +H ++ I S +I +L + FE+G + + F+ ID ++A I+ +GM ML PT IS P K Sbjct: 152 EHDTFKYFIGS-LIYDLYQGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVISTPVK 210 Query: 225 VIFFVLIDGWSLLVENL 241 + F D W++L + L Sbjct: 211 LAVFYFSDSWTILFKAL 227 >gi|296535008|ref|ZP_06897288.1| flagellar biosynthetic protein FliP [Roseomonas cervicalis ATCC 49957] gi|296264663|gb|EFH11008.1| flagellar biosynthetic protein FliP [Roseomonas cervicalis ATCC 49957] Length = 190 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 51/131 (38%), Positives = 80/131 (61%) Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90 S++T IV T+L++AP +L++ T F R ++V S+LRT +G+ PPN VI+SL Sbjct: 58 GAQSLTTNIVGLIVATTLLALAPGILVVATAFTRIVVVLSMLRTALGLQQSPPNSVIVSL 117 Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 +LF+ +VM+P L+R+ +PL++ ITE A +R PF FM N RE+DL+LF++ Sbjct: 118 SLFLAAFVMAPVLERAWNDAARPLIDGTITEEMAAERAIAPFRSFMEANVRERDLALFIE 177 Query: 151 MAHSSHRNTDI 161 +A Sbjct: 178 IARWQPPPEPP 188 >gi|179741500|gb|ACB86717.1| HrcR [uncultured soil bacterium] Length = 157 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 86/154 (55%), Gaps = 2/154 (1%) Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFW 133 +G+ VPPN+V+ +A+ ++ Y+M+P +++ Q N T I EPF Sbjct: 1 IGVQQVPPNMVLNGIAIIVSVYIMAPVAFSAMQGMQANQAPGNVTQNVTAGIAAAREPFR 60 Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193 F+ + + ++ F+ A + + +L P+F ++EL +F+IGFL+ + Sbjct: 61 TFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTDAFKIGFLLYI 120 Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227 F+++D+++A ++MAMG+ + PT++++P K++ Sbjct: 121 GFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLL 154 >gi|254285292|ref|ZP_04960257.1| Flagellar biosynthesis pathway, component FliP [Vibrio cholerae AM-19226] gi|71480611|gb|AAZ32233.1| VcsR2 [Vibrio cholerae non-O1/non-O139] gi|150424564|gb|EDN16500.1| Flagellar biosynthesis pathway, component FliP [Vibrio cholerae AM-19226] Length = 224 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 53/197 (26%), Positives = 91/197 (46%), Gaps = 12/197 (6%) Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114 I T F ++ IV +I++ +G +PP +V+ LA M + P + IE I+P Sbjct: 29 FFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNGVWPQIQPGIER-IKPY 87 Query: 115 MNNQITETTAIQ-RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT---------KN 164 + Q + + P V M + E + H+ + +T Sbjct: 88 FSQQEKQELNQEINNDLPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLTAIIELPFNFDK 147 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 +H ++ I S +I +L + FE+G + + F+ ID ++A I+ +GM ML PT IS P K Sbjct: 148 EHDTFKYFIGS-LIYDLYQGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVISTPVK 206 Query: 225 VIFFVLIDGWSLLVENL 241 + F D W++L + L Sbjct: 207 LAVFYFSDSWTILFKAL 223 >gi|179741438|gb|ACB86715.1| HrcR [uncultured soil bacterium] Length = 157 Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 85/155 (54%), Gaps = 2/155 (1%) Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFW 133 +G+ VPPN+V+ +A+ ++ + +P +++ Q N T I EPF Sbjct: 1 IGVQQVPPNMVLNGIAIIVSVSLPAPVAFSAMQGMQANQAPGNVTQNVTAGIAAAREPFR 60 Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193 F+ + + ++ F+ A + + +L P+F ++EL +F+IGFL+ + Sbjct: 61 TFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTDAFKIGFLLYI 120 Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 F+++D+++A ++MAMG+ + PT++++P K++ F Sbjct: 121 GFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 155 >gi|213613057|ref|ZP_03370883.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 158 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 56/158 (35%), Positives = 90/158 (56%), Gaps = 3/158 (1%) Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147 AL ++ ++M PTL E P+ + + P+ F++ N+ EK+ + Sbjct: 1 FALVLSLFIMGPTLLAVKER-WHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANY 59 Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 F ++ + K ILIP+F +S+L ++F IG LI LPFL ID++++ I++ Sbjct: 60 FRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILL 119 Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 AMGMMM+ P +ISLPFK++ F+L GW L + LV+SF Sbjct: 120 AMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF 157 >gi|179742748|gb|ACB86744.1| HrcR [uncultured soil bacterium] Length = 158 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 85/159 (53%), Gaps = 5/159 (3%) Query: 78 MGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ-ITETTAIQRVAEPFWVFM 136 + VPP V+ +A+ ++ ++M+P ++ + + EPF VF+ Sbjct: 1 VQQVPPTSVLNGVAIMVSCFIMAPVGMEAMHRAQLSSDAGSGMQVMPLLDAAREPFRVFL 60 Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196 + + E++ + F+ A + + +L P+F +SEL +F++GFL+ L F+ Sbjct: 61 KRHASEREKAFFLRSAREIWPPERAAELKQDDLIVLAPAFTLSELTAAFKMGFLLYLAFI 120 Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235 +ID+++A+++MA+G+ + PT +++P +++ F GW Sbjct: 121 VIDLVIASVLMALGLSQVDPTDVAIPLELLLF----GWG 155 >gi|293416108|ref|ZP_06658748.1| hypothetical protein ECDG_03710 [Escherichia coli B185] gi|291432297|gb|EFF05279.1| hypothetical protein ECDG_03710 [Escherichia coli B185] Length = 172 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 94/165 (56%), Gaps = 4/165 (2%) Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTRE 142 + + +AL ++ +VM P NN ++ ++ + ++ + Sbjct: 1 MTLNGVALLLSMFVMMPVGKEIYYNSQNENLSFNNVVSVVNFVETGMSGYKSYLIKYSEP 60 Query: 143 KDLSLFMDMA--HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200 + +S F + +SS N +I +D+I L+P++ +SE++ +F IGF I LPF+++D+ Sbjct: 61 ELVSFFEKIQKVNSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDL 120 Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +++++++ +GMMM+ P +IS P K+I FV +DGW++L + L+ + Sbjct: 121 VISSVLLTLGMMMMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 165 >gi|255523692|ref|ZP_05390658.1| type III secretion system inner membrane P protein [Clostridium carboxidivorans P7] gi|255512561|gb|EET88835.1| type III secretion system inner membrane P protein [Clostridium carboxidivorans P7] Length = 164 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 4/147 (2%) Query: 6 FFALFLVTPELVFAKSSLHDVMNIPADLSISTWI----VRTFGIFTILSIAPILLIMVTC 61 F +F + ++ +NI D + + ++ + TIL+I P ++M+T Sbjct: 18 IFLMFAASKVYAAPEAFPIPKVNISVDNASTPQQYVGNIKLLIMLTILTILPSFIMMMTS 77 Query: 62 FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121 F R I+VF LR MG PPN ++I LALF+T ++M P + IQP M N+IT+ Sbjct: 78 FVRIIVVFGFLRGAMGTQQSPPNTILIGLALFLTVFIMQPVYSKVNTNAIQPYMQNKITQ 137 Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLF 148 AI A+P FM T +KD Sbjct: 138 EQAIDEGAKPLRQFMLKYTYKKDFHYL 164 >gi|179741104|gb|ACB86705.1| HrcR [Pseudomonas fluorescens] Length = 162 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 52/155 (33%), Positives = 86/155 (55%), Gaps = 2/155 (1%) Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQP--LMNNQITETTAIQRVAEPFW 133 +G+ VPP++ I +AL T ++M+P + E M+N T EP Sbjct: 2 IGVQQVPPSMAINGIALAATLFIMAPVGYQVAENLKNAPLDMSNVQTLQQTGLVAIEPLR 61 Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193 FM+ N L+ + + + + +LIPSF++S+L+ FEIGFLI + Sbjct: 62 AFMKRNIDPDVLTHMHESSARMWPPEMAQSTEREDLILLIPSFVLSQLQAGFEIGFLIYI 121 Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 PF++ID+IV+ +++A+GM M+ P +ISLPFK++ F Sbjct: 122 PFIVIDLIVSNLLLALGMQMVSPMTISLPFKLLLF 156 >gi|179741157|gb|ACB86707.1| HrcR [Burkholderia terrae] Length = 154 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 84/151 (55%), Gaps = 2/151 (1%) Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFWVFMR 137 VPPN+V+ +A+ ++ Y+M+P +++ Q N T I EPF F+ Sbjct: 4 QVPPNMVLNGIAIIVSVYIMAPVAFSAMQGMQANQAPGNVTQNVTAGIAAAREPFRTFLE 63 Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197 + + ++ F+ A + + +L P+F ++EL +F+IGFL+ + F++ Sbjct: 64 AHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTDAFKIGFLLYIGFIV 123 Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 +D+++A ++MAMG+ + PT++++P K++ F Sbjct: 124 VDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 154 >gi|179741693|gb|ACB86723.1| HrcR [uncultured soil bacterium] Length = 157 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 86/155 (55%), Gaps = 2/155 (1%) Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFW 133 +G+ VP N+V+ +A+ ++ Y+M+P +++ Q N T I EPF Sbjct: 1 IGVQQVPLNMVLNGIAIIVSVYIMAPVAFSAMQGMQANQAPGNVTQNVTAGIAAAREPFR 60 Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193 F+ + + ++ F+ A + + +L P+F ++EL +F+IGFL+ + Sbjct: 61 TFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTDAFKIGFLLYI 120 Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 F+++D+++A ++MAMG+ + PT++++P K++ F Sbjct: 121 GFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 155 >gi|270488967|ref|ZP_06206041.1| FliP family protein [Yersinia pestis KIM D27] gi|270337471|gb|EFA48248.1| FliP family protein [Yersinia pestis KIM D27] Length = 169 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 43/154 (27%), Positives = 77/154 (50%), Gaps = 2/154 (1%) Query: 41 RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100 + + +LS+ P+L++M T F + +VFS+LR +G+ VPPN+ I LAL +T ++M+ Sbjct: 9 QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA 68 Query: 101 PTLDRSIEMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 P ++N I Q P+ F++ NT + ++ F D+ + Sbjct: 69 PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE 128 Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192 IL+P+F +S+L +F+IG L+ Sbjct: 129 RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLF 162 >gi|179741659|gb|ACB86722.1| HrcR [uncultured soil bacterium] Length = 157 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 84/155 (54%), Gaps = 2/155 (1%) Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFW 133 +G+ VP N+V+ +A+ ++ + +P +++ Q N T I EPF Sbjct: 1 IGVQQVPLNMVLNGIAIIVSVSITAPVAFSAMQGMQANQAPGNVTQNVTAGIAAAREPFR 60 Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193 F+ + + ++ F+ A + + +L P+F ++EL +F+IGFL+ + Sbjct: 61 TFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTDAFKIGFLLYI 120 Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 F+++D+++A ++MAMG+ + PT++++P K++ F Sbjct: 121 GFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 155 >gi|262274290|ref|ZP_06052101.1| surface presentation of antigens protein SpaP [Grimontia hollisae CIP 101886] gi|262220853|gb|EEY72167.1| surface presentation of antigens protein SpaP [Grimontia hollisae CIP 101886] Length = 224 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 52/196 (26%), Positives = 91/196 (46%), Gaps = 12/196 (6%) Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115 I + F ++ IV +I++ +G +PP +V+ LA M + P L IE ++P Sbjct: 30 FICFSGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNSIWPQLQPGIER-VEPYF 88 Query: 116 NNQITETTAIQRVAE-PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN---------D 165 + Q E Q + P V M + ++ + +T+ + Sbjct: 89 SQQTQEELNKQIDQDLPKGVTMYTLVSHWAEFFPEVLENAKQKTEKLTEVITLPFNFDQE 148 Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225 H ++ I S +I +L + FE+G + + F+ ID ++A I+ +GM ML PT IS P K+ Sbjct: 149 HDTFKYFIGS-LIWDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVISTPVKL 207 Query: 226 IFFVLIDGWSLLVENL 241 F D W++L + L Sbjct: 208 AVFYFSDSWTILFKAL 223 >gi|289805125|ref|ZP_06535754.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 117 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 57/119 (47%), Positives = 88/119 (73%), Gaps = 4/119 (3%) Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186 + A+P FM TRE DL+LF +A+S + + + RIL+P+++ SEL+ +F+ Sbjct: 1 KGAQPLRAFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSELKTAFQ 56 Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF Sbjct: 57 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 115 >gi|179742484|gb|ACB86740.1| HrcR [uncultured soil bacterium] Length = 153 Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 81/149 (54%), Gaps = 2/149 (1%) Query: 81 VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRN 138 PN+V+ +A+ ++ Y+M+P ++ + ++ + T+ EPF +F+ Sbjct: 5 GTPNMVLNGIAILVSLYIMAPIGMQAAQSLQGQQIDGRPTQALIQVFSAAREPFRLFLEK 64 Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198 + E+ F+ A + +L P+F +SEL +F+IGFL+ + F++I Sbjct: 65 HAHERGKRFFIRSASVVWPKEAARALHENDMIVLAPAFTLSELTDAFKIGFLLYIAFIVI 124 Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIF 227 D+I+A +++AMG+ + PT++++P K++ Sbjct: 125 DLIIANVLLAMGLNQVQPTNVAIPLKLLL 153 >gi|520562|gb|AAA67717.1| FLIP [Sinorhizobium meliloti] Length = 136 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 70/136 (51%), Positives = 102/136 (75%), Gaps = 1/136 (0%) Query: 1 MIRY-CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 M+R+ F + + A+S D++N P D S+++WI+RTFG+ T+LS+AP +LIMV Sbjct: 1 MLRFATFIIAMMAMSGIAGAQSFPADILNTPVDGSVASWIIRTFGLLTVLSVAPGILIMV 60 Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119 T FPRF+I F+ILR+GMG+ + P N++++SLALFMTFYVM+PT DR+ GI PL+ N+I Sbjct: 61 TSFPRFVIAFAILRSGMGLATTPSNMIMVSLALFMTFYVMAPTFDRAWRDGIDPLLKNEI 120 Query: 120 TETTAIQRVAEPFWVF 135 +ET A+QR++EPF F Sbjct: 121 SETDAMQRMSEPFREF 136 >gi|313056277|dbj|BAJ39856.1| putative type III secretion system apparatus protein VscR2 [Vibrio mimicus] Length = 243 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 50/197 (25%), Positives = 91/197 (46%), Gaps = 12/197 (6%) Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114 I T F ++ IV +I++ +G +PP +V+ LA M + P + IE ++P Sbjct: 48 FFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNAVWPQIQPGIER-VKPY 106 Query: 115 MNNQITETTAIQ-RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK---------N 164 + Q + P V M + E + H+ + +++ Sbjct: 107 FSQQEKQELNQDIDNDMPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLSEVIELPFNFDK 166 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 +H ++ + S +I +L + FE+G + + F+ ID ++A I+ +GM ML PT IS P K Sbjct: 167 EHDTFKYFVGS-LIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVISTPVK 225 Query: 225 VIFFVLIDGWSLLVENL 241 + F D W++L + L Sbjct: 226 LAVFYFSDSWTILFKAL 242 >gi|323183415|gb|EFZ68812.1| putative type III secretion apparatus integral membrane protein component [Escherichia coli 1357] Length = 165 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 90/158 (56%), Gaps = 4/158 (2%) Query: 92 LFMTFYVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149 + ++ +VM P + NN + ++ + ++ + + +S F Sbjct: 1 MLLSMFVMMPVGKEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFE 60 Query: 150 DMA--HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 + +SS N +I +D+I L+P++ +SE++ +F IGF I LPF+++D++++++++ Sbjct: 61 KIQKVNSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLL 120 Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +GMMM+ P +IS P K+I FV +DGW++L + L+ + Sbjct: 121 TLGMMMMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 158 >gi|308126175|ref|ZP_05908255.2| FliP family protein [Vibrio parahaemolyticus AQ4037] gi|308107367|gb|EFO44907.1| FliP family protein [Vibrio parahaemolyticus AQ4037] Length = 278 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 49/202 (24%), Positives = 92/202 (45%), Gaps = 17/202 (8%) Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114 I + F ++ IV +I++ +G +PP +V+ LA M + P + IE ++P Sbjct: 78 FFICFSGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNSVWPEVKPGIER-VKPY 136 Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDL-----SLFMDMAHSSHRNTDIT------- 162 ++Q ++ A + N L F ++ ++ T+ Sbjct: 137 FSSQHRLEDSLDTSASVSSDELPKNVTMFTLVSNLFEFFPELLKTAEDKTNKLTSLIDIP 196 Query: 163 ---KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 ++ ++ I S +I +L + FE+G + + F+ ID ++A I+ +GM ML PT I Sbjct: 197 LNFDEENQTFKFFIGS-LIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVI 255 Query: 220 SLPFKVIFFVLIDGWSLLVENL 241 S P K+ F D W++L + L Sbjct: 256 STPVKLAVFYFSDSWTILFKAL 277 >gi|313056253|dbj|BAJ39844.1| putative type III secretion system apparatus protein VscR2 [Vibrio mimicus] Length = 243 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 50/197 (25%), Positives = 91/197 (46%), Gaps = 12/197 (6%) Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114 I T F ++ IV +I++ +G +PP +V+ LA M + P + IE ++P Sbjct: 48 FFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNAVWPQVQPGIER-VKPY 106 Query: 115 MNNQITETTAIQ-RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK---------N 164 + Q + P V M + E + H+ + +++ Sbjct: 107 FSQQEKQELNQDVDNDMPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLSEVIELPFNFDK 166 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 +H ++ + S +I +L + FE+G + + F+ ID ++A I+ +GM ML PT IS P K Sbjct: 167 EHDTFKYFVGS-LIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVISTPVK 225 Query: 225 VIFFVLIDGWSLLVENL 241 + F D W++L + L Sbjct: 226 LAVFYFSDSWTILFKAL 242 >gi|313056235|dbj|BAJ39835.1| putative type III secretion system apparatus protein VscR2 [Vibrio mimicus] gi|313056265|dbj|BAJ39850.1| putative type III secretion system apparatus protein VscR2 [Vibrio mimicus] Length = 243 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 51/197 (25%), Positives = 91/197 (46%), Gaps = 12/197 (6%) Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114 I T F ++ IV +I++ +G +PP +V+ LA M + P + IE ++P Sbjct: 48 FFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNAVWPQIQPGIER-VKPY 106 Query: 115 MNNQITETTAIQ-RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK---------N 164 + Q + P V M + E + H+ + +++ Sbjct: 107 FSQQEKQELNQDFDNDMPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLSEVIELPFNFDK 166 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 DH ++ + S +I +L + FE+G + + F+ ID ++A I+ +GM ML PT IS P K Sbjct: 167 DHDTFKYFVAS-LIYDLYKGFELGLKLYIIFVSIDFLIAVILSGVGMTMLSPTVISTPVK 225 Query: 225 VIFFVLIDGWSLLVENL 241 + F D W++L + L Sbjct: 226 LAVFYFSDSWTILFKAL 242 >gi|328469627|gb|EGF40563.1| type III secretion system protein YscR [Vibrio parahaemolyticus 10329] Length = 229 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 48/201 (23%), Positives = 89/201 (44%), Gaps = 15/201 (7%) Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114 I + F ++ IV +I++ +G +PP +V+ LA M + P + IE ++P Sbjct: 29 FFICFSGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNSVWPEVKPGIER-VKPY 87 Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDL-----SLFMDMAHSSHRNTDITKND-HIE 168 ++Q +++ A + N L F ++ + T+ ++ I Sbjct: 88 FSSQHRLEDSLEPSASVSSEELPKNVTMFTLVSNLFEFFPEVLKIAEDKTNKLTSEIDIP 147 Query: 169 YRI--------LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220 +I +L + FE+G + + F+ ID ++A I+ +GM ML PT IS Sbjct: 148 LHFDEENQTFKFFIGSLIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVIS 207 Query: 221 LPFKVIFFVLIDGWSLLVENL 241 P K+ F D W++L + L Sbjct: 208 TPVKLAVFYFSDSWTILFKAL 228 >gi|313056229|dbj|BAJ39832.1| putative type III secretion system apparatus protein VscR2 [Vibrio mimicus] gi|313056247|dbj|BAJ39841.1| putative type III secretion system apparatus protein VscR2 [Vibrio mimicus] gi|313056259|dbj|BAJ39847.1| putative type III secretion system apparatus protein VscR2 [Vibrio mimicus] gi|313056271|dbj|BAJ39853.1| putative type III secretion system apparatus protein VscR2 [Vibrio mimicus] Length = 243 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 50/197 (25%), Positives = 91/197 (46%), Gaps = 12/197 (6%) Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114 I T F ++ IV +I++ +G +PP +V+ LA M + P + IE ++P Sbjct: 48 FFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNAVWPQIQPGIER-VKPY 106 Query: 115 MNNQITETTAIQ-RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK---------N 164 + Q + P V M + E + H+ + +++ Sbjct: 107 FSQQEKQELNQDVDNDMPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLSEVIELPFNFDK 166 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 +H ++ + S +I +L + FE+G + + F+ ID ++A I+ +GM ML PT IS P K Sbjct: 167 EHDTFKYFVGS-LIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVISTPVK 225 Query: 225 VIFFVLIDGWSLLVENL 241 + F D W++L + L Sbjct: 226 LAVFYFSDSWTILFKAL 242 >gi|28901197|ref|NP_800852.1| type III secretion system protein [Vibrio parahaemolyticus RIMD 2210633] gi|28809710|dbj|BAC62685.1| putative Type III secretion protein Spa24 [Vibrio parahaemolyticus RIMD 2210633] Length = 243 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 50/197 (25%), Positives = 91/197 (46%), Gaps = 12/197 (6%) Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114 I T F ++ IV +I++ +G +PP +V+ LA M + P + IE ++P Sbjct: 48 FFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNAVWPQIQPGIER-VKPY 106 Query: 115 MNNQITETTAIQ-RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK---------N 164 + Q + P V M + E + H+ + +++ Sbjct: 107 FSQQEKQELNQDVDNDMPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLSEVIELPFNFDK 166 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 +H ++ + S +I +L + FE+G + + F+ ID ++A I+ +GM ML PT IS P K Sbjct: 167 EHDTFKYFVGS-LIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVISTPVK 225 Query: 225 VIFFVLIDGWSLLVENL 241 + F D W++L + L Sbjct: 226 LAVFYFSDSWTILFKAL 242 >gi|158834403|gb|ABW81996.1| type III secretion system inner membrane component [Candidatus Hamiltonella defensa] Length = 155 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 81/156 (51%), Gaps = 5/156 (3%) Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115 + TC+ +F IVF ++R +G+ +P N+ + +AL + +VM P + E G + Sbjct: 1 IASGTCYIKFSIVFVMVRNALGLQQIPSNMTLNGVALLLASFVMMPIVKNIYE-GYKNAQ 59 Query: 116 NNQITETTAIQRVAEPFWVFMRNNTREKDLSL--FMDMAHSSHRNTDITKNDH--IEYRI 171 + ++ I+ V + + D L F + A S + D + Sbjct: 60 FDVRNLSSVIEFVENGLDGYRSYLVKYADPELTQFFEKAASDRKEEDFAGAEEEKPSIFA 119 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 L+P++ +SE++ +F+IGF I LPF+++D+++++I++ Sbjct: 120 LLPAYALSEIKSAFKIGFYIYLPFVVVDLLISSILL 155 >gi|313056241|dbj|BAJ39838.1| putative type III secretion system apparatus protein VscR2 [Vibrio mimicus] Length = 229 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 48/202 (23%), Positives = 91/202 (45%), Gaps = 17/202 (8%) Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114 I + F ++ IV +I++ +G +PP +V+ LA M + P + +E ++P Sbjct: 29 FFICFSGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNSVWPEVKPGLER-VKPY 87 Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDL-----SLFMDMAHSSHRNTDIT------- 162 ++Q ++ A + N L F ++ ++ T+ Sbjct: 88 FSSQHRLEDSLDTSASVSSEELPKNVTMFTLVSNLFDFFPELLKTAEDKTNKLTSLIEIP 147 Query: 163 ---KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 + ++ I S +I +L + FE+G + + F+ ID ++A I+ +GM ML PT I Sbjct: 148 LNFDEEDQTFKFFIGS-LIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVI 206 Query: 220 SLPFKVIFFVLIDGWSLLVENL 241 S P K+ F D W++L + L Sbjct: 207 STPVKLAVFYFSDSWTILFKAL 228 >gi|260362756|ref|ZP_05775625.1| type III secretion system protein [Vibrio parahaemolyticus K5030] gi|260880044|ref|ZP_05892399.1| type III secretion system protein [Vibrio parahaemolyticus AN-5034] gi|260895161|ref|ZP_05903657.1| type III secretion system protein [Vibrio parahaemolyticus Peru-466] gi|308085658|gb|EFO35353.1| type III secretion system protein [Vibrio parahaemolyticus Peru-466] gi|308092712|gb|EFO42407.1| type III secretion system protein [Vibrio parahaemolyticus AN-5034] gi|308111991|gb|EFO49531.1| type III secretion system protein [Vibrio parahaemolyticus K5030] Length = 224 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 50/197 (25%), Positives = 91/197 (46%), Gaps = 12/197 (6%) Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114 I T F ++ IV +I++ +G +PP +V+ LA M + P + IE ++P Sbjct: 29 FFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNAVWPQIQPGIER-VKPY 87 Query: 115 MNNQITETTAIQ-RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK---------N 164 + Q + P V M + E + H+ + +++ Sbjct: 88 FSQQEKQELNQDVDNDMPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLSEVIELPFNFDK 147 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 +H ++ + S +I +L + FE+G + + F+ ID ++A I+ +GM ML PT IS P K Sbjct: 148 EHDTFKYFVGS-LIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVISTPVK 206 Query: 225 VIFFVLIDGWSLLVENL 241 + F D W++L + L Sbjct: 207 LAVFYFSDSWTILFKAL 223 >gi|153836107|ref|ZP_01988774.1| VcsR2 [Vibrio parahaemolyticus AQ3810] gi|149750861|gb|EDM61606.1| VcsR2 [Vibrio parahaemolyticus AQ3810] Length = 224 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 50/197 (25%), Positives = 91/197 (46%), Gaps = 12/197 (6%) Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114 I T F ++ IV +I++ +G +PP +V+ LA M + P + IE ++P Sbjct: 29 FFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNAVWPQIQPGIER-VKPY 87 Query: 115 MNNQITETTAIQ-RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK---------N 164 + Q + P V M + E + H+ + +++ Sbjct: 88 FSQQEKQELNRDVDNDMPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLSEVIELSFNFDK 147 Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224 +H ++ + S +I +L + FE+G + + F+ ID ++A I+ +GM ML PT IS P K Sbjct: 148 EHDTFKYFVGS-LIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVISTPVK 206 Query: 225 VIFFVLIDGWSLLVENL 241 + F D W++L + L Sbjct: 207 LAVFYFSDSWTILFKAL 223 >gi|221271465|dbj|BAH15017.1| putative type III secretion system apparatus protein VscR2 [Vibrio parahaemolyticus] Length = 229 Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 49/202 (24%), Positives = 92/202 (45%), Gaps = 17/202 (8%) Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114 I + F ++ IV +I++ +G +PP +V+ LA M + P + IE ++P Sbjct: 29 FFICFSGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNSVWPEVKPGIER-VKPY 87 Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDL-----SLFMDMAHSSHRNTDIT------- 162 ++Q ++ A + N L F ++ ++ T+ Sbjct: 88 FSSQYRLEDSLDPSASVSSEELPKNVTMFTLVSNLFEFFPELLKTAEDKTNKLTSLIDIP 147 Query: 163 ---KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 ++ ++ I S +I +L + FE+G + + F+ ID ++A I+ +GM ML PT I Sbjct: 148 LNFDEENQTFKFFIGS-LIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVI 206 Query: 220 SLPFKVIFFVLIDGWSLLVENL 241 S P K+ F D W++L + L Sbjct: 207 STPVKLAVFYFSDSWTILFKAL 228 >gi|158834391|gb|ABW81990.1| type III secretion system inner membrane component [Candidatus Hamiltonella defensa] gi|158834393|gb|ABW81991.1| type III secretion system inner membrane component [Candidatus Hamiltonella defensa] gi|158834395|gb|ABW81992.1| type III secretion system inner membrane component [Candidatus Hamiltonella defensa] gi|158834397|gb|ABW81993.1| type III secretion system inner membrane component [Candidatus Hamiltonella defensa] gi|158834399|gb|ABW81994.1| type III secretion system inner membrane component [Candidatus Hamiltonella defensa] gi|158834405|gb|ABW81997.1| type III secretion system inner membrane component [Candidatus Hamiltonella defensa] gi|158834407|gb|ABW81998.1| type III secretion system inner membrane component [Candidatus Hamiltonella defensa] gi|158834423|gb|ABW82005.1| type III secretion system inner membrane component [Candidatus Hamiltonella defensa] gi|158834430|gb|ABW82008.1| type III secretion system inner membrane component [Candidatus Hamiltonella defensa] Length = 155 Score = 112 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 81/156 (51%), Gaps = 5/156 (3%) Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115 + TC+ +F IVF ++R +G+ +P N+ + +AL + +VM P + E G + Sbjct: 1 IASGTCYIKFSIVFVMVRNALGLQQIPSNMTLNGVALLLASFVMMPIVKNIYE-GHKNAQ 59 Query: 116 NNQITETTAIQRVAEPFWVFMRNNTREKDLSL--FMDMAHSSHRNTDITKNDH--IEYRI 171 + ++ I+ V + + D L F + A S + D + Sbjct: 60 FDVRNLSSVIEFVENGLDGYRSYLVKYADPELTQFFEKAASDRKEEDFAGAEEEKPSIFA 119 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 L+P++ +SE++ +F+IGF I LPF+++D+++++I++ Sbjct: 120 LLPAYALSEIKSAFKIGFYIYLPFVVVDLLISSILL 155 >gi|158834401|gb|ABW81995.1| type III secretion system inner membrane component [Candidatus Hamiltonella defensa] gi|158834409|gb|ABW81999.1| type III secretion system inner membrane component [Candidatus Hamiltonella defensa] gi|158834411|gb|ABW82000.1| type III secretion system inner membrane component [Candidatus Hamiltonella defensa] gi|158834413|gb|ABW82001.1| type III secretion system inner membrane component [Candidatus Hamiltonella defensa] gi|158834415|gb|ABW82002.1| type III secretion system inner membrane component [Candidatus Hamiltonella defensa] gi|158834418|gb|ABW82003.1| type III secretion system inner membrane component [Candidatus Hamiltonella defensa] gi|158834420|gb|ABW82004.1| type III secretion system inner membrane component [Candidatus Hamiltonella defensa] gi|158834425|gb|ABW82006.1| type III secretion system inner membrane component [Candidatus Hamiltonella defensa] gi|158834427|gb|ABW82007.1| type III secretion system inner membrane component [Candidatus Hamiltonella defensa] Length = 155 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 82/156 (52%), Gaps = 5/156 (3%) Query: 56 LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115 + TC+ +F IVF ++R +G+ +P N+ + +AL + +VM P + E G + Sbjct: 1 IASGTCYIKFSIVFVMVRNALGLQQIPSNMTLNGVALLLASFVMMPIVKNIYE-GHKNAQ 59 Query: 116 NNQITETTAIQRVAEPFWVFMRNNTREKDLSL--FMDMAHSSHRNTDI--TKNDHIEYRI 171 + ++ I+ V + + D L F + A S + D + + Sbjct: 60 FDVRNLSSVIEFVENGLDGYRSYLVKYADPELTQFFEKAASDRKEEDFVGAEEEKPSIFA 119 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207 L+P++ +SE++ +F+IGF I LPF+++D+++++I++ Sbjct: 120 LLPAYALSEIKSAFKIGFYIYLPFVVVDLLISSILL 155 >gi|153212098|ref|ZP_01947915.1| VcsR2 [Vibrio cholerae 1587] gi|153827997|ref|ZP_01980664.1| VcsR2 [Vibrio cholerae 623-39] gi|124116894|gb|EAY35714.1| VcsR2 [Vibrio cholerae 1587] gi|148876578|gb|EDL74713.1| VcsR2 [Vibrio cholerae 623-39] Length = 229 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 48/202 (23%), Positives = 92/202 (45%), Gaps = 17/202 (8%) Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114 I + F ++ IV +I++ +G +PP +V+ LA M + P + +E ++P Sbjct: 29 FFICFSGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNSVWPEVKPGLER-VKPY 87 Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDL-----SLFMDMAHSSHRNTDIT------- 162 ++Q +I A + N L F ++ ++ T+ Sbjct: 88 FSSQHRLEDSIDTSASISSEELPKNVTMFTLVSNLFEFFPELLKNAEDKTNKLTSLIEIP 147 Query: 163 ---KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219 ++ ++ I S +I +L + FE+G + + F+ ID ++A I+ +G+ ML PT I Sbjct: 148 LSFDEENQTFKFFIGS-LIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGITMLSPTVI 206 Query: 220 SLPFKVIFFVLIDGWSLLVENL 241 S P K+ F D W++L + L Sbjct: 207 STPVKLAVFYFSDSWTILFKAL 228 >gi|327251616|gb|EGE63302.1| putative type III secretion apparatus integral membrane protein component [Escherichia coli STEC_7v] Length = 158 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 85/151 (56%), Gaps = 4/151 (2%) Query: 99 MSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA--HS 154 M P + NN + ++ + ++ + + +S F + +S Sbjct: 1 MMPVGKEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQKVNS 60 Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214 S N +I +++I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMMM+ Sbjct: 61 SEDNEEIIDDENISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMMMM 120 Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 P +IS P K+I FV +DGW++L + L+ + Sbjct: 121 SPVTISTPIKLILFVAMDGWTMLSKGLILQY 151 >gi|213027551|ref|ZP_03341998.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 170 Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 89/166 (53%), Gaps = 9/166 (5%) Query: 90 LALFMTFYVMSPTLDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147 +AL ++ +VM P + + N+ + + + + + ++ + + + Sbjct: 1 VALLLSMFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQF 60 Query: 148 FMDMAHSSHRNT-------DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200 F + D + + L+P++ +SE++ +F+IGF + LPF+++D+ Sbjct: 61 FENAQLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDL 120 Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +V+++++A+GMMM+ P +IS P K++ FV +DGW+LL + L+ ++ Sbjct: 121 VVSSVLLALGMMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQYM 166 >gi|320189199|gb|EFW63858.1| surface presentation of antigens protein SpaP [Escherichia coli O157:H7 str. EC1212] gi|326339060|gb|EGD62875.1| surface presentation of antigens protein SpaP [Escherichia coli O157:H7 str. 1044] gi|326343059|gb|EGD66827.1| surface presentation of antigens protein SpaP [Escherichia coli O157:H7 str. 1125] Length = 158 Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 42/151 (27%), Positives = 85/151 (56%), Gaps = 4/151 (2%) Query: 99 MSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA--HS 154 M P + NN + ++ + ++ + + +S F + +S Sbjct: 1 MMPVGKEIYYNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQKVNS 60 Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214 S N +I +D+I L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMMM+ Sbjct: 61 SEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMMMM 120 Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 P +IS P K+I FV +DGW++L + L+ + Sbjct: 121 SPVTISTPIKLILFVAMDGWTMLSKGLILQY 151 >gi|304412098|ref|ZP_07393708.1| type III secretion system inner membrane P protein [Shewanella baltica OS183] gi|307305993|ref|ZP_07585739.1| type III secretion system inner membrane P protein [Shewanella baltica BA175] gi|304349648|gb|EFM14056.1| type III secretion system inner membrane P protein [Shewanella baltica OS183] gi|306911486|gb|EFN41912.1| type III secretion system inner membrane P protein [Shewanella baltica BA175] Length = 231 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 48/203 (23%), Positives = 89/203 (43%), Gaps = 17/203 (8%) Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114 I + + ++ IV +I++ +G +PP +V+ LA M + P + +E ++P Sbjct: 29 FFICFSGYVKYNIVLNIIKNAVGTQQIPPTIVVNLLAALMALNSIWPDIKPGLER-VKPY 87 Query: 115 MNNQIT--------ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166 QI +++++ +P V M +A + + ++T+ Sbjct: 88 FIEQINGEINPDVLQSSSLFEDKKPEQVTMYYLVSNVFEFFPELLARAQRKTNELTEIID 147 Query: 167 IEYRILIPS--------FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 I S +I +L + FE G + + F+ ID ++A I+ +GM ML PT Sbjct: 148 IPLNFDSGSDTLKYFLGNLILDLYQGFEFGLKLYMIFVSIDFLIAVILSGVGMTMLSPTV 207 Query: 219 ISLPFKVIFFVLIDGWSLLVENL 241 IS P K+ F D W++L L Sbjct: 208 ISTPVKLAVFYFSDSWTILFRAL 230 >gi|218512614|ref|ZP_03509454.1| type III secretion system protein [Rhizobium etli 8C-3] Length = 148 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 51/126 (40%), Positives = 73/126 (57%) Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 + +VA P FM + + F+ + N T + +L PSF++S Sbjct: 21 GMADGMIKVAAPLKDFMLKFSDAEVRDFFVQASQKIWANAPATPIASDDITVLTPSFLVS 80 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239 EL R+FEIGFLI LPFL+ID V+ I++A+GM M+ PT +S P K++ FV IDGW L+E Sbjct: 81 ELTRAFEIGFLIYLPFLMIDFAVSAILVALGMQMMSPTVVSTPLKLLLFVSIDGWRRLLE 140 Query: 240 NLVKSF 245 LV S+ Sbjct: 141 GLVLSY 146 >gi|218513456|ref|ZP_03510296.1| flagellar biosynthesis protein FliP [Rhizobium etli 8C-3] Length = 124 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 70/100 (70%), Positives = 87/100 (87%), Gaps = 2/100 (2%) Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195 M NTR+KDL+LF+D+A R +I +D I+YR+LIP+FMISE+RR FEIGFL++LPF Sbjct: 1 MAANTRDKDLALFVDLAR--ERGQNIQTSDPIDYRVLIPAFMISEIRRGFEIGFLVVLPF 58 Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235 L+ID+IVATI MAMGMMMLPPTSISLPFK++FFVLIDGW+ Sbjct: 59 LVIDLIVATITMAMGMMMLPPTSISLPFKILFFVLIDGWN 98 >gi|179742405|gb|ACB86739.1| HrcR [uncultured soil bacterium] Length = 154 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 44/145 (30%), Positives = 76/145 (52%), Gaps = 2/145 (1%) Query: 76 MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFW 133 +G+ VPPN+ + +AL T +VM+P + + TE T+ V EP Sbjct: 1 IGVQQVPPNMAMYGIALAATMFVMAPVAHDIQQRVHDHPLEMGSTEKLQTSAMTVIEPLQ 60 Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193 FM NT + +D + + + +P+F++SEL+ F+IGFLI + Sbjct: 61 RFMTRNTDPDVSAHLLDNTQRMWPKDMADQATKNDLLLAVPAFVLSELQAGFQIGFLIYI 120 Query: 194 PFLIIDMIVATIVMAMGMMMLPPTS 218 PF++ID+IV+ +++A+GM M+ P + Sbjct: 121 PFIVIDLIVSNLLLALGMQMVSPMT 145 >gi|253990947|ref|YP_003042303.1| type III secretion system protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782397|emb|CAQ85561.1| Putative Type III secretion flagellar biosynthesis inner membrane protein [Photorhabdus asymbiotica] Length = 236 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 50/207 (24%), Positives = 92/207 (44%), Gaps = 21/207 (10%) Query: 55 LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114 I + F ++ IV +IL+ MG +PP++V+ LA + + L+ +E I+P Sbjct: 29 FFICFSGFVKYNIVLNILKNAMGTQQIPPSIVVNLLAALLALNSIWGDLEPGLER-IKPY 87 Query: 115 MNNQITETTAIQRVAEPF-----------WVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163 + ++ I V M + D +A + ++ ++ K Sbjct: 88 FTDTYDKSIPIIDPISGLGLSNNELSKSGDVTMYHLVSRIDEYFPEIIARAERKSLELEK 147 Query: 164 NDHIEY-------RILIP--SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214 + +L P +I +L + FE+G + + F+ ID ++A ++ +GM ML Sbjct: 148 LFTLPIAFNDGSGSVLKPLLGGLILDLYKGFELGIKLYMIFVSIDFLIAVVLSGVGMSML 207 Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENL 241 PT IS+P K+ F DGW++L L Sbjct: 208 SPTVISIPIKLAVFYFSDGWTILFNTL 234 >gi|149922183|ref|ZP_01910621.1| flagellar biosynthesis protein [Plesiocystis pacifica SIR-1] gi|149816923|gb|EDM76408.1| flagellar biosynthesis protein [Plesiocystis pacifica SIR-1] Length = 216 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 56/190 (29%), Positives = 97/190 (51%), Gaps = 13/190 (6%) Query: 59 VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118 T F + IV + +R G+ + P +++L + +T VM+P E L + Sbjct: 36 CTAFTKIAIVLAAVRQGLSADRLLPVSSMLALGVALTAVVMAPVAGACAEALAALLDASA 95 Query: 119 ITETTAIQR---VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPS 175 E A+++ EP FM +T D + +A +S R D + IL+P+ Sbjct: 96 AGEGVALRQWLGTLEPLRGFMATHT---DPAELERLAAASERGVD-------DPLILVPA 145 Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235 F++SEL ++ L++LPF++ID+IVA + +G+ P + +LP KV+ F+ DGW Sbjct: 146 FLVSELGAGLQLAVLVLLPFVVIDLIVAEVQALLGLQQTPSVTFALPAKVLVFLAADGWH 205 Query: 236 LLVENLVKSF 245 L+V LV+ + Sbjct: 206 LVVVGLVEGY 215 >gi|218670285|ref|ZP_03519956.1| flagellar biosynthesis protein FliP [Rhizobium etli GR56] Length = 96 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 66/92 (71%), Positives = 82/92 (89%) Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213 + R +I +D I+YR+LIP+FMISE+RR FEIGFL++LPFL+ID+IVATI MAMGMMM Sbjct: 4 ARERGQNIQTSDPIDYRVLIPAFMISEIRRGFEIGFLVVLPFLVIDLIVATITMAMGMMM 63 Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LPPTSISLPFK++FFVLIDGW+LLV +LV+SF Sbjct: 64 LPPTSISLPFKILFFVLIDGWNLLVGSLVRSF 95 >gi|289805085|ref|ZP_06535714.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 111 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 47/110 (42%), Positives = 72/110 (65%) Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195 M+ N+ EK+ + F ++ + K ILIP+F +S+L ++F IG LI LPF Sbjct: 1 MQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPF 60 Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 L ID++++ I++AMGMMM+ P +ISLPFK++ F+L GW L + LV+SF Sbjct: 61 LAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF 110 >gi|312972918|ref|ZP_07787091.1| putative type III secretion apparatus integral membrane protein component [Escherichia coli 1827-70] gi|310332860|gb|EFQ00074.1| putative type III secretion apparatus integral membrane protein component [Escherichia coli 1827-70] gi|332344757|gb|AEE58091.1| Type III secretion apparatus protein EpaP [Escherichia coli UMNK88] Length = 126 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 77/116 (66%), Gaps = 2/116 (1%) Query: 132 FWVFMRNNTREKDLSLFMDMA--HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189 + ++ + + ++ F + +SS N +I +D+I L+P++ +SE++ +F IGF Sbjct: 4 YKSYLIKYSEPELVNFFEKIQKVNSSEDNEEIFDDDNISIFSLLPAYALSEIKSAFIIGF 63 Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 I LPF+++D++++++++ +GMMM+ P +IS P K+I FV +DGW++L + L+ + Sbjct: 64 YIYLPFVVVDLVISSVLLTLGMMMMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 119 >gi|320202506|gb|EFW77076.1| surface presentation of antigens protein SpaP [Escherichia coli EC4100B] Length = 126 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 77/116 (66%), Gaps = 2/116 (1%) Query: 132 FWVFMRNNTREKDLSLFMDMA--HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189 + ++ + + +S F + +SS N +I +D+I L+P++ +SE++ +F IGF Sbjct: 4 YKSYLIKYSEPELVSFFEKIQKVNSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGF 63 Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 I LPF+++D++++++++ +GMMM+ P +IS P K+I FV +DGW++L + L+ + Sbjct: 64 YIYLPFVVVDLVISSVLLTLGMMMMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 119 >gi|179742649|gb|ACB86742.1| HrcR [uncultured soil bacterium] Length = 145 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 75/140 (53%), Gaps = 5/140 (3%) Query: 89 SLALFMTFYVMSPT---LDRSIEMGIQPLMNNQITETTA--IQRVAEPFWVFMRNNTREK 143 +A+ ++ Y+++P IE Q IT+T + + EP+ F+ + + + Sbjct: 1 GIAIIVSVYILAPIGFAAMHGIETSQQNGQGGNITQTVSAGLIAAGEPYRAFLAAHAQSR 60 Query: 144 DLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVA 203 + F+ A + + +L P+F ++EL +F+IGFL+ + F+++D+++A Sbjct: 61 ERQFFLRSAAALWPPQQARALKDTDLIVLAPAFTMTELTDAFKIGFLLYIGFIVVDLVIA 120 Query: 204 TIVMAMGMMMLPPTSISLPF 223 ++MAMG+ + PT++++P Sbjct: 121 NVLMAMGLNQVQPTNVAIPL 140 >gi|662864|gb|AAA79756.1| flagellar protein [Pseudomonas aeruginosa] Length = 141 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 38/104 (36%), Positives = 57/104 (54%) Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85 V + ++ I T LS P ++++T F R IIVFSILR +G+ S P N Sbjct: 37 VTTNGQGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQ 96 Query: 86 VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129 V++ LALF+T +VM+P D+ +QP +N QI A+Q+ Sbjct: 97 VLVGLALFLTMFVMAPVFDKINSQALQPYLNEQIPAQEALQKAE 140 >gi|179741043|gb|ACB86703.1| HrcR [Burkholderia phenazinium] Length = 134 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 73/134 (54%), Gaps = 2/134 (1%) Query: 80 SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMR 137 VPPN+VI +A+ ++ YVM+P ++ + M Q T+ EPF F++ Sbjct: 1 QVPPNMVINGIAVLVSLYVMAPIGMQAAQSMQGQAMAPQPTQALIQMFSAAREPFRGFLK 60 Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197 + +E++ FM A + +L P+F +SEL +F+IGFL+ + F++ Sbjct: 61 AHAKEREKRFFMHSASIVWPKEAANNLHDTDLIVLAPAFTLSELADAFKIGFLLYIAFIV 120 Query: 198 IDMIVATIVMAMGM 211 +D+I+A +++AMG+ Sbjct: 121 VDLIIANVLLAMGL 134 >gi|179741749|gb|ACB86725.1| HrcR [uncultured soil bacterium] Length = 122 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 65/120 (54%) Query: 109 MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIE 168 Q N T I EPF F+ + + ++ F+ A + + Sbjct: 1 QANQAPGNVTQNVTAGIAAAREPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTD 60 Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 +L P+F ++EL +F+IGFL+ + F+++D+++A ++MAMG+ + PT++++PFK++ F Sbjct: 61 LIVLAPAFTLTELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPFKLLLF 120 >gi|194350737|gb|ACF53799.1| HrcR [Erwinia psidii] Length = 128 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 42/128 (32%), Positives = 70/128 (54%), Gaps = 1/128 (0%) Query: 103 LDRSIEMGIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161 R +PL I A + EP FM N L+ + + + Sbjct: 1 WHRCFRTQEKPLDMTDIASLQASVTYGLEPLQTFMSRNVDPDILTHLHENSLQMWPASLS 60 Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221 K + ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SL Sbjct: 61 EKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSL 120 Query: 222 PFKVIFFV 229 PFK++ FV Sbjct: 121 PFKLLLFV 128 >gi|19880031|gb|AAM00229.1|AF358871_1 SctR [Burkholderia pseudomallei] Length = 133 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 76/133 (57%), Gaps = 2/133 (1%) Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTRE 142 +V+ +A+ ++ YVM+P ++ + + + +Q ++ A+ EPF F+ +T E Sbjct: 1 MVLNGIAILVSLYVMAPIGMQAAKALDEQQLASQSSQAIIQALGSAREPFRSFLEKHTPE 60 Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202 ++ F+ A + + + + +L P+F +SEL +F+IGFL+ + F+I+D+++ Sbjct: 61 REKRFFIRSASVIWPKEEASLLNERDLIVLAPAFALSELTDAFKIGFLLYIVFIIVDLVI 120 Query: 203 ATIVMAMGMMMLP 215 A +++A+G+ + Sbjct: 121 ANVLLALGLNQIT 133 >gi|179741303|gb|ACB86711.1| HrcR [uncultured soil bacterium] Length = 111 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 64/109 (58%) Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 ET I EPF F+ + + ++ F+ A + + +L P+F ++ Sbjct: 1 NETAGIAAAREPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLT 60 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 EL +F+IGFL+ + F+++D+++A ++MAMG+ + PT++++PFK++ F Sbjct: 61 ELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPFKLLLF 109 >gi|179741968|gb|ACB86731.1| HrcR [uncultured soil bacterium] Length = 119 Score = 95.4 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 65/117 (55%) Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 Q N T I EPF F+ + + ++ F+ A + + + Sbjct: 1 QAPGNVTQNVTAGIAAAREPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIV 60 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 L P+F ++EL +F+IGFL+ + F+++D+++A ++MAMG+ + PT++++PFK++ F Sbjct: 61 LAPAFTLTELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPFKLLLF 117 >gi|179741902|gb|ACB86729.1| HrcR [uncultured soil bacterium] Length = 133 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 69/131 (52%), Gaps = 2/131 (1%) Query: 100 SPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157 +P +++ Q N T I EPF F+ + + ++ F+ A + Sbjct: 1 APVAFSAMQGMQANQAPGNVTQNVTAGIAAAREPFRTFLEAHAQSRERQFFLRSATALWP 60 Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217 + +L P+F ++EL +F+IGFL+ + F+++D+++A ++MAMG+ + PT Sbjct: 61 AQQGKALKDTDLIVLAPAFTLTELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQVQPT 120 Query: 218 SISLPFKVIFF 228 ++++P K++ F Sbjct: 121 NVAIPLKLLLF 131 >gi|179741467|gb|ACB86716.1| HrcR [uncultured soil bacterium] Length = 122 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 40/109 (36%), Positives = 67/109 (61%), Gaps = 1/109 (0%) Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 EP F+ ++R + + F+ A + +D ++ I +P+F+++ Sbjct: 13 NMVETANLAKEPLREFLLKHSRPNERAFFLRTAQRVDPARSVEMSDR-DFVITVPAFVVN 71 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 EL +F+IGFLI LPFL+ID++++ I++AMGMMML PT+ISLP K++ F Sbjct: 72 ELSVAFQIGFLIFLPFLVIDLVISNILLAMGMMMLSPTTISLPLKLLLF 120 >gi|179741560|gb|ACB86719.1| HrcR [uncultured soil bacterium] Length = 120 Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 64/117 (54%) Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 Q N T I EPF F+ + + ++ F+ A + + + Sbjct: 2 QAPSNVTQNVTAGIAAAREPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIV 61 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 L P+F ++EL +F+IGFL+ + F+++D+++A ++MAMG+ + PT++++P K++ F Sbjct: 62 LAPAFTLTELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 118 >gi|179741532|gb|ACB86718.1| HrcR [uncultured soil bacterium] Length = 132 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 64/120 (53%) Query: 109 MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIE 168 Q N T I EPF F+ + + ++ F+ A + + Sbjct: 11 QANQAPGNVTQNVTAGIAAAREPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTD 70 Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 +L P+F ++EL +F+IGFL+ + F+++D+++A ++MAMG+ + PT++++P K++ F Sbjct: 71 LIVLAPAFTLTELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 130 >gi|179741815|gb|ACB86727.1| HrcR [uncultured soil bacterium] Length = 119 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 64/117 (54%) Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 Q N T I EPF F+ + + ++ F+ A + + + Sbjct: 1 QAPGNVTQNVTAGIAAAREPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIV 60 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 L P+F ++EL +F+IGFL+ + F+++D+++A ++MAMG+ + PT++++P K++ F Sbjct: 61 LAPAFTLTELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 117 >gi|194350756|gb|ACF53807.1| HrcR [Pectobacterium carotovorum subsp. carotovorum] Length = 127 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 66/115 (57%) Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174 +++ T++ P FM +NT L + + + ++IP Sbjct: 13 LSSMDNLKTSVTNGVVPLQKFMTHNTDPDILIHLQENSVRMWPKEMSDSVNKDNLLLVIP 72 Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229 +F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP K++ FV Sbjct: 73 AFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPLKMLLFV 127 >gi|194350721|gb|ACF53791.1| HrcR [Erwinia amylovora] Length = 127 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 67/115 (58%) Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174 +++ T++ P FM +NT L + + + + ++IP Sbjct: 13 LSSMDNLKTSVTNGVAPLQKFMTHNTDPDILIHLQENSVRMWPKEMLDSVNKDNLLLVIP 72 Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229 +F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP K++ FV Sbjct: 73 AFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPLKMLLFV 127 >gi|194350758|gb|ACF53808.1| HrcR [Pectobacterium betavasculorum] gi|194350760|gb|ACF53809.1| HrcR [Pectobacterium betavasculorum] gi|194350764|gb|ACF53811.1| HrcR [Pectobacterium carotovorum subsp. brasiliensis] gi|194350766|gb|ACF53812.1| HrcR [Pectobacterium wasabiae WPP163] Length = 127 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 65/115 (56%) Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174 +++ T++ P FM +NT L + + ++IP Sbjct: 13 LSSMDNLKTSVTNGVAPLQKFMTHNTDPDILIHLQENSVQMWPKEMSENVSKDNLLLVIP 72 Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229 +F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP K++ FV Sbjct: 73 AFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPLKMLLFV 127 >gi|179741369|gb|ACB86713.1| HrcR [uncultured soil bacterium] Length = 120 Score = 93.5 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 63/117 (53%) Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171 Q N T I EPF F+ + + ++ F+ A + + + Sbjct: 2 QAPGNVTQNVTAGIAAAREPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIV 61 Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 L P+F ++EL +F+IGFL+ + F+++D+++A ++MAMG+ PT++++P K++ F Sbjct: 62 LAPAFTLTELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQGQPTNVAIPLKLLLF 118 >gi|330903542|gb|EGH34114.1| type III secretion system protein YscR [Pseudomonas syringae pv. japonica str. M301072PT] Length = 117 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 43/117 (36%), Positives = 74/117 (63%) Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189 EP FM NT ++ ++ + + + IP+F++SEL+ FEIGF Sbjct: 1 EPLQRFMTRNTDPDVVAHLLENTQRMWPKEMADQASKNDLLLAIPAFVLSELQAGFEIGF 60 Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 LI +PF++ID+IV+ +++A+GM M+ P ++SLP K++ FVL+ GWS L+++L S++ Sbjct: 61 LIYIPFIVIDLIVSNLLLALGMQMVSPMTLSLPLKLLLFVLVSGWSRLLDSLFYSYM 117 >gi|207109546|ref|ZP_03243708.1| flagellar biosynthesis protein FliP [Helicobacter pylori HPKX_438_CA4C1] Length = 99 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 53/100 (53%), Positives = 75/100 (75%), Gaps = 4/100 (4%) Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205 F + + + T D + +LIP+FMISEL+ +F+IGFL+ LPFL+IDM++++I Sbjct: 1 RFFFRIRNLPNPKT----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVIDMVISSI 56 Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +MAMGMMMLPP ISLPFK++ F+L+DG++LL ENLV SF Sbjct: 57 LMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 96 >gi|323163025|gb|EFZ48858.1| harpin secretion protein hrpW [Escherichia coli E128010] Length = 149 Score = 91.6 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 69/133 (51%), Gaps = 2/133 (1%) Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92 ++I + + +F +LS+ PI +++ T F + IV IL+ +G+ VPPN+ + S++L Sbjct: 1 MTIGSQPIFLIIVFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSL 60 Query: 93 FMTFYVMSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 +T ++MSP + + + Q +N + +++ P+ F+ NT ++++ F Sbjct: 61 ILTMFIMSPIILQINDNISQEPINYTDSDFFQKVDEKILSPYRGFLEKNTEKENVEFFER 120 Query: 151 MAHSSHRNTDITK 163 A N I K Sbjct: 121 AAQKKLGNETILK 133 >gi|330985216|gb|EGH83319.1| type III secretion system protein YscR [Pseudomonas syringae pv. lachrymans str. M301315] Length = 93 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 39/90 (43%), Positives = 60/90 (66%) Query: 156 HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215 + +LIP+F+ SEL R+FEIGFL+ +PFL++D++V+ ++MAMGM M+ Sbjct: 2 WSPEARADLRDDDLVVLIPAFVSSELTRAFEIGFLLYIPFLVVDLLVSNVLMAMGMSMVS 61 Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 PT IS+P K+ FV + GWS L+ L+ S+ Sbjct: 62 PTLISIPLKIFLFVALSGWSRLMHGLILSY 91 >gi|213419213|ref|ZP_03352279.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 120 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 72/115 (62%), Gaps = 8/115 (6%) Query: 140 TREKDLSLFMDMAHSSHR--------NTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191 +++L F + A + D + + L+P++ +SE++ +F+IGF + Sbjct: 2 YSDRELVQFFENAQLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYL 61 Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 LPF+++D++V+++++A+GMMM+ P +IS P K++ FV +DGW+LL + L+ ++ Sbjct: 62 YLPFVVVDLVVSSVLLALGMMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQYM 116 >gi|194350731|gb|ACF53796.1| HrcR [Brenneria lupinicola] Length = 125 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 39/125 (31%), Positives = 67/125 (53%), Gaps = 1/125 (0%) Query: 103 LDRSIEMGIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161 R +PL IT A + EP FM N L+ + + + Sbjct: 1 WHRCFRTQEKPLDMTDITSLQASVTYGQEPLQTFMSRNVDPDILTHLHENSLQMWPASLS 60 Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221 K + ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SL Sbjct: 61 EKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSL 120 Query: 222 PFKVI 226 P ++ Sbjct: 121 PLPLL 125 >gi|179742161|gb|ACB86735.1| HrcR [uncultured soil bacterium] Length = 112 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 35/108 (32%), Positives = 62/108 (57%) Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180 + V EP FM NT ++ +D + + + +P+F++SE Sbjct: 3 LQASANTVIEPLQRFMTRNTDPDVIAHLLDNTQRMWPKDMADQASKSDLLLAVPAFVLSE 62 Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228 L+ F+IGFLI +PF++ID+I + +++A+GM ++ P +ISLPFK++ F Sbjct: 63 LQAGFQIGFLIYIPFIVIDLIDSNLLLALGMQIVFPMTISLPFKLLLF 110 >gi|226326424|ref|ZP_03801942.1| hypothetical protein PROPEN_00272 [Proteus penneri ATCC 35198] gi|225205207|gb|EEG87561.1| hypothetical protein PROPEN_00272 [Proteus penneri ATCC 35198] Length = 105 Score = 88.5 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 32/79 (40%), Positives = 60/79 (75%) Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227 L+P++ +SE++ +F IGF + LPF++ID++V+ I++A+GMMM+ P ++S+P K+I Sbjct: 21 SLLSLLPAYALSEIKSAFIIGFYLYLPFIVIDLVVSCILLALGMMMMSPITLSVPLKLIL 80 Query: 228 FVLIDGWSLLVENLVKSFI 246 F+ +DGW+LL + L+ ++ Sbjct: 81 FIAMDGWTLLSKGLINQYL 99 >gi|194350768|gb|ACF53813.1| HrcR [Pectobacterium atrosepticum SCRI1043] Length = 121 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 61/108 (56%) Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174 +++ T++ P FM +NT L + + + ++IP Sbjct: 13 LSSMDNLKTSVTNGVAPLQKFMTHNTDPDILIHLQENSVRMWPKEMSDSVNKDNLLLVIP 72 Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222 +F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP Sbjct: 73 AFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLP 120 >gi|194350762|gb|ACF53810.1| HrcR [Pectobacterium carotovorum subsp. brasiliensis] Length = 121 Score = 86.6 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 60/109 (55%) Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174 +++ T++ P FM +NT L + + ++IP Sbjct: 13 LSSMDNLKTSVTNGVAPLQKFMTHNTDPDILIHLQENSVQMWPKEMSENVSKDNLLLVIP 72 Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223 +F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP Sbjct: 73 AFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPL 121 >gi|194350733|gb|ACF53797.1| HrcR [Brenneria lupinicola] Length = 128 Score = 83.9 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 42/128 (32%), Positives = 70/128 (54%), Gaps = 1/128 (0%) Query: 103 LDRSIEMGIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161 R +PL IT A + EP FM N L+ + + + Sbjct: 1 WHRCFRTQEKPLDMTDITSLQASVTYGLEPLQTFMSRNVDPDILTHLHENSLQMWPASLS 60 Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221 K + ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SL Sbjct: 61 EKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSL 120 Query: 222 PFKVIFFV 229 P K++ FV Sbjct: 121 PLKLLLFV 128 >gi|194350749|gb|ACF53805.1| HrcR [Brenneria nigrifluens] Length = 128 Score = 83.5 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 41/128 (32%), Positives = 71/128 (55%), Gaps = 1/128 (0%) Query: 103 LDRSIEMGIQPLMNNQIT-ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161 R PL N I+ ++ + P FM NT L+ + + + Sbjct: 1 WRRCFRTQENPLNMNDISVLQESVTQGLAPLQTFMSRNTDPDILTHLQENSLRMWPPSLS 60 Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221 K + ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SL Sbjct: 61 EKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSL 120 Query: 222 PFKVIFFV 229 P K++ FV Sbjct: 121 PLKLLLFV 128 >gi|194350725|gb|ACF53793.1| HrcR [Erwinia mallotivora] Length = 128 Score = 83.5 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 42/128 (32%), Positives = 70/128 (54%), Gaps = 1/128 (0%) Query: 103 LDRSIEMGIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161 R +PL IT A + EP FM N L+ + + + Sbjct: 1 WHRYFRTQEKPLDMTDITSLQASVTYGLEPLQTFMSRNVDPDILTHLHENSLRMWPASLS 60 Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221 K + ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SL Sbjct: 61 EKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSL 120 Query: 222 PFKVIFFV 229 P K++ FV Sbjct: 121 PLKLLLFV 128 >gi|207110871|ref|ZP_03245033.1| flagellar biosynthesis protein FliP [Helicobacter pylori HPKX_438_CA4C1] Length = 78 Score = 83.5 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 31/78 (39%), Positives = 51/78 (65%) Query: 78 MGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMR 137 PP +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ A PF FM Sbjct: 1 TQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFML 60 Query: 138 NNTREKDLSLFMDMAHSS 155 NTREKDL+LF + + Sbjct: 61 KNTREKDLALFFRIRNLP 78 >gi|194350723|gb|ACF53792.1| HrcR [Erwinia mallotivora] Length = 127 Score = 82.0 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Query: 103 LDRSIEMGIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161 R +PL IT A + EP FM N L+ + + + Sbjct: 1 WHRYFRTQEKPLDMTDITSLQASVTYGLEPLQTFMSRNVDPDILTHLHENSLRMWPASLS 60 Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218 K + ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A GM M+ P + Sbjct: 61 EKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVMLARGMQMVAPQT 117 >gi|194350751|gb|ACF53806.1| HrcR [Brenneria salicis] Length = 128 Score = 82.0 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 41/128 (32%), Positives = 69/128 (53%), Gaps = 1/128 (0%) Query: 103 LDRSIEMGIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161 R +PL IT A + EP FM N L+ + + + Sbjct: 1 WHRCFRTQEKPLDMTDITSLQASVTYGLEPLQTFMSRNVDPDILTHLHENSLQMWPASLS 60 Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221 K + ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM + P ++SL Sbjct: 61 EKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQRVAPXTLSL 120 Query: 222 PFKVIFFV 229 P K++ FV Sbjct: 121 PLKLLLFV 128 >gi|194350741|gb|ACF53801.1| HrcR [Erwinia tracheiphila] Length = 128 Score = 82.0 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 39/110 (35%), Positives = 63/110 (57%) Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 T T EP FM NT L+ + + K ++IP+F++S Sbjct: 19 TLETTATHGIEPLQKFMSRNTDPDILTHLHENSIRMWPAAMSEKATTDNILLVIPAFVLS 78 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229 EL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ PT++ LP K++ FV Sbjct: 79 ELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPTTLWLPLKLLLFV 128 >gi|194350739|gb|ACF53800.1| HrcR [Erwinia tracheiphila] gi|194350743|gb|ACF53802.1| HrcR [Brenneria quercina] Length = 128 Score = 82.0 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 40/110 (36%), Positives = 64/110 (58%) Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 T T EP FM NT L+ + + K ++IP+F++S Sbjct: 19 TLETTATHGIEPLQKFMSRNTDPDILTHLHENSIRMWPAAMSEKATTDNILLVIPAFVLS 78 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229 EL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ PT++SLP K++ FV Sbjct: 79 ELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPTTLSLPLKLLLFV 128 >gi|194350745|gb|ACF53803.1| HrcR [Brenneria quercina] gi|194350747|gb|ACF53804.1| HrcR [Brenneria nigrifluens] Length = 128 Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 40/110 (36%), Positives = 64/110 (58%) Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179 T T EP FM NT L+ + + K ++IP+F++S Sbjct: 19 TLETTATHGIEPLQKFMSRNTDPDILTHLHENSIRMWPPAMSEKATTDNILLVIPAFVLS 78 Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229 EL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ PT++SLP K++ FV Sbjct: 79 ELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPTTLSLPLKLLLFV 128 >gi|194350727|gb|ACF53794.1| HrcR [Erwinia rhapontici] gi|194350729|gb|ACF53795.1| HrcR [Erwinia rhapontici] gi|194350735|gb|ACF53798.1| HrcR [Erwinia psidii] gi|194350771|gb|ACF53814.1| HrcR [Erwinia chrysanthemi] Length = 128 Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats. Identities = 42/128 (32%), Positives = 70/128 (54%), Gaps = 1/128 (0%) Query: 103 LDRSIEMGIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161 R +PL IT A + EP FM N L+ + + + Sbjct: 1 WLRCFRTQEKPLDMTDITSLQASVTYGLEPLQTFMSRNVDPDILTHLHENSLQMWPASLS 60 Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221 K + ++IP+F++SEL+ F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SL Sbjct: 61 EKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSL 120 Query: 222 PFKVIFFV 229 P K++ FV Sbjct: 121 PLKLLLFV 128 >gi|75906098|gb|ABA29440.1| putative type III secretion system protein [Candidatus Hamiltonella defensa] Length = 97 Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 40/96 (41%), Positives = 64/96 (66%) Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209 DM ++ K IL+P+F +S+L +F+IG L+ LPF+ ID+IV+ I++AM Sbjct: 1 DMIKNNWPKKYRDKVASDSLLILMPAFTVSQLIEAFKIGLLLYLPFVAIDLIVSNILLAM 60 Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 GMMM+ P +ISLPFK++ F+L+ GW +++ L S+ Sbjct: 61 GMMMMSPMTISLPFKILIFLLVGGWDMILGQLAGSY 96 >gi|179741848|gb|ACB86728.1| HrcR [uncultured soil bacterium] Length = 93 Score = 77.7 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 53/88 (60%) Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197 + + ++ F+ A + + +L P+F ++EL +F+IGFL+ + F++ Sbjct: 1 AHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTDAFKIGFLLYIGFIV 60 Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKV 225 +D+++A ++MAMG+ + PT++++P K+ Sbjct: 61 VDLVIANVLMAMGLNQVQPTNVAIPLKL 88 >gi|218679632|ref|ZP_03527529.1| flagellar biosynthesis protein FliP [Rhizobium etli CIAT 894] Length = 105 Score = 77.7 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 56/99 (56%), Positives = 75/99 (75%) Query: 5 CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64 F A +V PEL A+ D++N+P D S++ WI+RTFG+ T+LS+AP +LIMVT FPR Sbjct: 6 VFLAAMMVVPELAVAQQLPTDLLNVPVDGSVAAWIIRTFGLLTVLSVAPGILIMVTSFPR 65 Query: 65 FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103 FII FSILR+GMG+ S P N++++SL+LFMTFYVM L Sbjct: 66 FIIAFSILRSGMGLSSTPSNMILLSLSLFMTFYVMFADL 104 >gi|330985215|gb|EGH83318.1| type III secretion system protein YscR [Pseudomonas syringae pv. lachrymans str. M301315] Length = 133 Score = 74.6 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 48/131 (36%), Gaps = 2/131 (1%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 ++ + + + P+ ++ +T F + +V ++R +G+ PPNLV+ +AL Sbjct: 3 GYQPNLIEIILVVATIGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIALI 62 Query: 94 MTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151 ++ YV +P + G + N + P + E + F+ Sbjct: 63 LSVYVTTPLIGDMYREVQGRDLSLQNVQQLEELGSALRPPLQAHLSKFANESERGFFVQA 122 Query: 152 AHSSHRNTDIT 162 + Sbjct: 123 TETIWSPEARA 133 >gi|323267197|gb|EGA50682.1| type III secretion system protein YscR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] Length = 109 Score = 73.1 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 31/107 (28%), Positives = 56/107 (52%), Gaps = 1/107 (0%) Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92 +S+ ++ GI +LSI P++++M T F + +VFSILR +G+ VPPN+ + LAL Sbjct: 1 MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL 60 Query: 93 FMTFYVMSPTLDRSIEM-GIQPLMNNQITETTAIQRVAEPFWVFMRN 138 ++ ++M PTL E + + + P+ F++ Sbjct: 61 VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQK 107 >gi|226326425|ref|ZP_03801943.1| hypothetical protein PROPEN_00273 [Proteus penneri ATCC 35198] gi|225205208|gb|EEG87562.1| hypothetical protein PROPEN_00273 [Proteus penneri ATCC 35198] Length = 121 Score = 72.3 bits (176), Expect = 5e-11, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 54/117 (46%), Gaps = 6/117 (5%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101 ++AP ++ TC+ +F IV + R +G+ VP N+V+ ++AL M +VM+P Sbjct: 7 LILTLAFATLAPFIIAAGTCYLKFSIVLVMTRNALGVQQVPSNMVLNAVALMMALFVMTP 66 Query: 102 TLDRSIEMGIQPLMNNQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHS 154 S + + ++ IT +++R ++ + ++ + + L F Sbjct: 67 IAKNSYQYLVDEPIS--ITSPESLERFSDEALGEYKRYLYRYSEPELLEFFEKSTRK 121 >gi|323178894|gb|EFZ64470.1| harpin secretion protein hrpW [Escherichia coli 1180] Length = 118 Score = 71.6 bits (174), Expect = 9e-11, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 60/113 (53%), Gaps = 2/113 (1%) Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92 ++I + + +F +LS+ PI +++ T F + IV IL+ +G+ VPPN+ + S++L Sbjct: 5 MTIGSQPIFLIIVFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSL 64 Query: 93 FMTFYVMSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREK 143 +T ++MSP + + + Q +N + +++ P+ F+ R+ Sbjct: 65 ILTMFIMSPIILQINDNISQEPINYTDSDFFQKVDEKILSPYRGFLEKIQRKT 117 >gi|255523691|ref|ZP_05390657.1| type III secretion system inner membrane P protein [Clostridium carboxidivorans P7] gi|255512560|gb|EET88834.1| type III secretion system inner membrane P protein [Clostridium carboxidivorans P7] Length = 70 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 41/69 (59%), Positives = 60/69 (86%) Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236 MISEL+ +F IGF++ +PF+IID++VA+++M+MGM MLPP +SLPFK++ FV++DGW L Sbjct: 1 MISELKTAFMIGFMLYIPFMIIDLVVASVLMSMGMFMLPPAMVSLPFKLLLFVMVDGWYL 60 Query: 237 LVENLVKSF 245 LV++LV SF Sbjct: 61 LVKSLVSSF 69 >gi|213419313|ref|ZP_03352379.1| surface presentation of antigens protein SpaP [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 100 Score = 70.4 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 38/68 (55%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 + + ++ P ++ TCF +F IVF ++R +G+ +P N+ + S+AL ++ +VM Sbjct: 5 ISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNSVALLLSMFVM 64 Query: 100 SPTLDRSI 107 P + + Sbjct: 65 WPIMHDAY 72 >gi|255023681|ref|ZP_05295667.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL J1-208] Length = 118 Score = 68.1 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 2/101 (1%) Query: 4 YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63 + +F V A+S L + D S+ V F + T+LS++ +++M T F Sbjct: 18 FAISLVFFWPGVNVHAESWLDSLGVNGTDGVNSS--VALFVLVTVLSLSASIVLMFTHFT 75 Query: 64 RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104 IIV + R G+G ++PPN V++ LALF++ ++M P + Sbjct: 76 YCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLIT 116 >gi|179741334|gb|ACB86712.1| HrcR [uncultured soil bacterium] Length = 72 Score = 67.7 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 47/63 (74%) Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225 + +L P+F ++EL +F+IGFL+ + F+++D+++A ++MAMG+ + PT++++P K+ Sbjct: 8 DTDLIVLAPAFTLTELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPLKL 67 Query: 226 IFF 228 + F Sbjct: 68 LLF 70 >gi|179741285|gb|ACB86710.1| HrcR [uncultured soil bacterium] Length = 88 Score = 67.3 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 41/81 (50%) Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182 + EPF F+ + + ++ F+ A + + +L P+F ++EL Sbjct: 8 EGMAAAREPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELT 67 Query: 183 RSFEIGFLIILPFLIIDMIVA 203 +F+IGFL+ + F+++D+ +A Sbjct: 68 DAFKIGFLLYIGFIVVDLEIA 88 >gi|291084579|ref|ZP_06539401.2| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 60 Score = 66.5 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 37/60 (61%) Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130 +LR +G S PPN V++ LALF+TF++MSP +D+ QP +I+ A+ + A+ Sbjct: 1 MLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQKISMQEALDKGAQ 60 >gi|218670413|ref|ZP_03520084.1| flagellar biosynthesis protein FliP [Rhizobium etli GR56] Length = 84 Score = 66.5 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 46/84 (54%), Positives = 61/84 (72%), Gaps = 1/84 (1%) Query: 1 MIRYC-FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59 MIR+ F A + PEL A+ D++N+P D S++ WI+RTFG+ TILS+AP +LIMV Sbjct: 1 MIRFIIFLAAMMAVPELAVAQQLPTDLLNVPVDGSVAAWIIRTFGLLTILSVAPGILIMV 60 Query: 60 TCFPRFIIVFSILRTGMGMGSVPP 83 T FPRFII FSILR+G+G+ S P Sbjct: 61 TSFPRFIIAFSILRSGIGLSSTPS 84 >gi|323178895|gb|EFZ64471.1| harpin secretion protein hrpW [Escherichia coli 1180] Length = 68 Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 31/65 (47%), Positives = 51/65 (78%) Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 + +L +F+IGFL+ LPF+ ID+I++ I++A+GMMM+ P +IS+PFK++ F+L+ GW L Sbjct: 1 MGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQKL 60 Query: 238 VENLV 242 E L+ Sbjct: 61 FEFLL 65 >gi|323267198|gb|EGA50683.1| type III secretion system protein YscR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] Length = 69 Score = 63.1 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 36/68 (52%), Positives = 53/68 (77%) Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237 +S+L ++F IG LI LPFL ID++++ I++AMGMMM+ P +ISLPFK++ F+L GW L Sbjct: 1 MSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLT 60 Query: 238 VENLVKSF 245 + LV+SF Sbjct: 61 LAQLVQSF 68 >gi|167948772|ref|ZP_02535846.1| flagellar biosynthesis protein FliP [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 109 Score = 61.5 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 28/64 (43%) Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85 V + T ++ T LS+ P L+M+T F R IIV +ILR +G P Sbjct: 6 VTQDAGGVQTYTLSIQVLLFMTALSLIPGALMMMTSFARIIIVLAILRQALGTQEHPATT 65 Query: 86 VIIS 89 I Sbjct: 66 QIPG 69 >gi|213028920|ref|ZP_03343367.1| surface presentation of antigens protein SpaO [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 125 Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 34/63 (53%) Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93 S + + + ++ P ++ TCF +F IVF ++R +G+ +P N+ + S+AL Sbjct: 63 SGNGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNSVALL 122 Query: 94 MTF 96 ++ Sbjct: 123 LSC 125 >gi|145207712|emb|CAJ90702.1| putative RhcR protein [Bradyrhizobium japonicum] Length = 57 Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 32/52 (61%), Positives = 40/52 (76%) Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 PF+ ID+IV TI+MAMGM M+ PT IS+PFK+ FV IDGWS L+ LV S+ Sbjct: 1 PFITIDLIVTTILMAMGMSMVSPTVISVPFKLFLFVTIDGWSRLMHGLVLSY 52 >gi|15646198|ref|NP_207478.1| flagellar biosynthesis protein [Helicobacter pylori 26695] gi|7464067|pir||D64605 flagellar biosynthesis protein - Helicobacter pylori (strain 26695) Length = 105 Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 2/82 (2%) Query: 4 YCFFALFLVTPELVF--AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61 + L+ P + A S++ +N P D + + T+L +AP L++++T Sbjct: 6 FLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTS 65 Query: 62 FPRFIIVFSILRTGMGMGSVPP 83 F R I+VFS LRT +G PP Sbjct: 66 FTRLIVVFSFLRTALGTQQTPP 87 >gi|213615826|ref|ZP_03371652.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 73 Score = 57.3 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 46/71 (64%) Query: 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92 +S+ ++ GI +LSI P++++M T F + +VFSILR +G+ VPPN+ + AL Sbjct: 1 MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL 60 Query: 93 FMTFYVMSPTL 103 ++ ++M PTL Sbjct: 61 VLSLFIMGPTL 71 >gi|119391678|emb|CAJ46463.1| RhcR protein [Bradyrhizobium japonicum] gi|145207704|emb|CAJ90696.1| putative RhcR protein [Bradyrhizobium sp. MSDJ 5327] gi|145207708|emb|CAJ90699.1| putative RhcR protein [Bradyrhizobium japonicum] Length = 57 Score = 57.3 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 31/52 (59%), Positives = 40/52 (76%) Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 P ++ID+IV TI+MAMGM M+ PT IS+PFK+ FV IDGWS L+ LV S+ Sbjct: 1 PLIVIDLIVTTILMAMGMSMVSPTVISVPFKLFLFVTIDGWSRLMHGLVLSY 52 >gi|119391682|emb|CAJ46466.1| RhcR protein [Bradyrhizobium liaoningense] gi|145207716|emb|CAJ90705.1| putative RhcR protein [Bradyrhizobium japonicum] Length = 57 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 31/52 (59%), Positives = 39/52 (75%) Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 P + ID+IV TI+MAMGM M+ PT IS+PFK+ FV IDGWS L+ LV S+ Sbjct: 1 PLITIDLIVTTILMAMGMSMVSPTVISVPFKLFLFVTIDGWSRLMHGLVLSY 52 >gi|207110048|ref|ZP_03244210.1| flagellar biosynthesis protein FliP [Helicobacter pylori HPKX_438_CA4C1] Length = 104 Score = 55.4 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 35/64 (54%) Query: 19 AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78 A S++ +N P D + + T+L +AP L++++T F R I+VFS LRT +G Sbjct: 41 ALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGT 100 Query: 79 GSVP 82 P Sbjct: 101 QQTP 104 >gi|289805086|ref|ZP_06535715.1| type III secretion system protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 62 Score = 55.0 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 38/58 (65%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99 GI +LSI P++++M T F + +VFSILR +G+ VPPN+ + AL ++ ++M Sbjct: 1 MIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIM 58 >gi|167948773|ref|ZP_02535847.1| flagellar biosynthetic protein FliP [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 153 Score = 54.6 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 4/57 (7%) Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPS-FMISELRRSFEI 187 FM TRE DL++F + + + + +L+P+ F SEL+ F+I Sbjct: 1 MREFMLAQTREDDLAMFARIGNYRRAAESRRM---VPFSLLLPALFATSELKTGFQI 54 >gi|158524084|gb|ABW71149.1| putative type III secretion apparatus protein [Vibrio parahaemolyticus] Length = 125 Score = 52.3 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 53/127 (41%), Gaps = 12/127 (9%) Query: 94 MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ-RVAEPFWVFMRNNTREKDLSLFMDMA 152 M + P + IE ++P + Q + P V M + E + Sbjct: 1 MALNAVWPQIQPGIER-VKPYFSQQEKQELNQDVDNDMPKNVTMYSLVSEWSTFFPELLE 59 Query: 153 HSSHRNTDITK---------NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVA 203 H+ + +++ +H ++ + S +I++L + FE+G + + F+ ID ++A Sbjct: 60 HAKQKTDKLSEVIELPFNFDKEHDTFKYFVGS-LINDLYKGFELGLKLYIVFVSIDFLIA 118 Query: 204 TIVMAMG 210 I+ +G Sbjct: 119 VILSGVG 125 >gi|121592127|gb|ABD36816.1| flagellar biosynthesis protein FliP [Pseudomonas fluorescens] Length = 55 Score = 51.9 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 31/50 (62%), Positives = 42/50 (84%) Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 LIID++VA+++MAMGMMML P ISLPFK++ FVL+DGW+L++ L SF Sbjct: 1 LIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLASSF 50 >gi|51587274|emb|CAE53660.1| putative HrcR [Pseudomonas fluorescens bv. V] gi|51587278|emb|CAE53663.1| putative HrcR [Pseudomonas fluorescens bv. V] gi|51587286|emb|CAE53669.1| putative HrcR protein [Pseudomonas fluorescens bv. V] gi|51587290|emb|CAE53672.1| putative HrcR protein [Pseudomonas fluorescens] gi|51587314|emb|CAE53690.1| putative HrcR [Pseudomonas fluorescens bv. V] Length = 53 Score = 51.1 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 24/53 (45%), Positives = 43/53 (81%) Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 PF++ID+IV+ +++A+GM M+ P +ISLP K++ FV++ GWS L+++L S++ Sbjct: 1 PFIVIDLIVSNLLLALGMQMVSPMTISLPLKLLLFVMVSGWSRLLDSLFLSYL 53 >gi|254510638|ref|ZP_05122705.1| flagellar biosynthetic protein FliP [Rhodobacteraceae bacterium KLH11] gi|221534349|gb|EEE37337.1| flagellar biosynthetic protein FliP [Rhodobacteraceae bacterium KLH11] Length = 101 Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 31/49 (63%) Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTG 75 +++ SIS ++ + T+LS+AP L IM+TCFP I V +ILR G Sbjct: 24 LSLGEGGSISARTIQLILLITVLSLAPGLAIMITCFPFLITVLAILRQG 72 >gi|321399649|emb|CBJ44652.1| putative type III secretion system protein HcrR [Pseudomonas sp. MTR-48-522] Length = 55 Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 45/55 (81%) Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 ++PF++ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GW+ L+++L S++ Sbjct: 1 VIPFIVIDLIVSNLLLALGMQMVAPMTISLPLKLLIFVLVQGWTQLLDSLFYSYL 55 >gi|51587318|emb|CAE53693.1| putative HrcR [Pseudomonas fluorescens] gi|321399617|emb|CBJ44628.1| putative type III secretion system protein HcrR [Pseudomonas sp. MTE-48-102] gi|321399621|emb|CBJ44631.1| putative type III secretion system protein HcrR [Pseudomonas sp. MTE-48-104] gi|321399641|emb|CBJ44646.1| putative type III secretion system protein HcrR [Pseudomonas sp. MTR-25-521] gi|321399645|emb|CBJ44649.1| putative type III secretion system protein HcrR [Pseudomonas sp. MTR-48-521] gi|321399657|emb|CBJ44658.1| putative type III secretion system protein HcrR [Pseudomonas sp. MTR-J5-521] gi|321399661|emb|CBJ44661.1| putative type III secretion system protein HcrR [Pseudomonas sp. MTR-J5-522] gi|321399665|emb|CBJ44664.1| putative type III secretion system protein HcrR [Pseudomonas sp. MTR-J5-621] gi|321399669|emb|CBJ44667.1| putative type III secretion system protein HcrR [Pseudomonas sp. MTR-J5-622] gi|321399673|emb|CBJ44670.1| putative type III secretion system protein HcrR [Pseudomonas sp. MTR-J5-623] Length = 53 Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 24/53 (45%), Positives = 43/53 (81%) Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 PF++ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GW+ L+++L S++ Sbjct: 1 PFIVIDLIVSNLLLALGMQMVAPMTISLPLKLLIFVLVQGWTQLLDSLFYSYL 53 >gi|284810343|gb|ADB95953.1| putative HrcR [Pseudomonas cichorii] gi|284810347|gb|ADB95956.1| putative HrcR [Pseudomonas cichorii] gi|284810351|gb|ADB95959.1| putative HrcR [Pseudomonas cichorii] gi|284810355|gb|ADB95962.1| putative HrcR [Pseudomonas cichorii] gi|284810359|gb|ADB95965.1| putative HrcR [Pseudomonas cichorii] gi|284810363|gb|ADB95968.1| putative HrcR [Pseudomonas cichorii] gi|284810367|gb|ADB95971.1| putative HrcR [Pseudomonas cichorii] gi|284810371|gb|ADB95974.1| putative HrcR [Pseudomonas cichorii] gi|284810375|gb|ADB95977.1| putative HrcR [Pseudomonas cichorii] gi|284810379|gb|ADB95980.1| putative HrcR [Pseudomonas cichorii] gi|284810403|gb|ADB95998.1| putative HrcR [Pseudomonas cichorii] Length = 44 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 20/44 (45%), Positives = 34/44 (77%) Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 + I++A+GM M+ P +ISLP K++ FVL+DGW+ L++ L S++ Sbjct: 1 SNILLALGMQMVAPMTISLPLKILLFVLVDGWTRLLDGLFYSYM 44 >gi|51587262|emb|CAE53651.1| putative HrcR protein [Pseudomonas blatchfordae] Length = 53 Score = 48.8 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 24/53 (45%), Positives = 42/53 (79%) Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 PF++ID+IV+ +++A+GM M+ P +ISLP K++ FV++ GWS L+ +L S++ Sbjct: 1 PFIVIDLIVSNLLLALGMQMVSPMTISLPPKLLLFVMVSGWSRLLVSLFLSYL 53 >gi|238799426|ref|ZP_04642855.1| Flagellar biosynthetic protein FliP [Yersinia mollaretii ATCC 43969] gi|238716730|gb|EEQ08617.1| Flagellar biosynthetic protein FliP [Yersinia mollaretii ATCC 43969] Length = 46 Score = 48.4 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 27/44 (61%), Positives = 39/44 (88%) Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 +A+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF Sbjct: 1 MASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 44 >gi|51587282|emb|CAE53666.1| putative HrcR protein [Pseudomonas fluorescens bv. I] Length = 49 Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 22/49 (44%), Positives = 39/49 (79%) Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 ID+IV+ +++A+GM M+ P +ISLP K++ FV++ GWS L+++L S++ Sbjct: 1 IDLIVSNLLLALGMQMVSPMTISLPLKLLLFVMVSGWSRLLDSLFLSYL 49 >gi|51587298|emb|CAE53678.1| putative HrcR protein [Pseudomonas fluorescens bv. V] Length = 48 Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 38/48 (79%) Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 D+IV+ +++A+GM M+ P +ISLP K++ FV++ GWS L+++L S++ Sbjct: 1 DLIVSNLLLALGMQMVSPMTISLPLKLLLFVMVSGWSRLLDSLFLSYL 48 >gi|51587310|emb|CAE53687.1| putative HrcR [Pseudomonas fluorescens bv. III] gi|321399613|emb|CBJ44625.1| putative type III secretion system protein HrcR [Pseudomonas sp. MTE-25-201] gi|321399633|emb|CBJ44640.1| putative type III secretion system protein HcrR [Pseudomonas sp. MTE-J5-708] Length = 51 Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 41/51 (80%) Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 ++ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GW+ L+++L S++ Sbjct: 1 IVIDLIVSNLLLALGMQMVAPMTISLPLKLLIFVLVQGWTQLLDSLFYSYL 51 >gi|51587294|emb|CAE53675.1| putative HrcR protein [Pseudomonas fluorescens bv. I] gi|321399637|emb|CBJ44643.1| putative type III secretion system protein HcrR [Pseudomonas sp. MTR-25-321] Length = 50 Score = 47.7 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 22/50 (44%), Positives = 40/50 (80%) Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GW+ L+++L S++ Sbjct: 1 VIDLIVSNLLLALGMQMVAPMTISLPLKLLIFVLVQGWTQLLDSLFYSYL 50 >gi|170690583|ref|ZP_02881750.1| hypothetical protein BgramDRAFT_0559 [Burkholderia graminis C4D1M] gi|170145018|gb|EDT13179.1| hypothetical protein BgramDRAFT_0559 [Burkholderia graminis C4D1M] Length = 65 Score = 47.3 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 22/43 (51%) Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84 + +S+ P + ++VT + + ++V +LR +G+ P Sbjct: 10 LLIVIVAISLVPFVAMVVTSYAKIVVVLGLLRNALGVQQCRPT 52 >gi|51587306|emb|CAE53684.1| putative HrcR [Pseudomonas fluorescens bv. II] Length = 49 Score = 47.3 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 22/49 (44%), Positives = 39/49 (79%) Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GW+ L+++L S++ Sbjct: 1 IDLIVSNLLLALGMQMVAPMTISLPLKLLIFVLVQGWTQLLDSLFYSYL 49 >gi|284810387|gb|ADB95986.1| putative HrcR [Pseudomonas cichorii] gi|284810391|gb|ADB95989.1| putative HrcR [Pseudomonas cichorii] gi|284810399|gb|ADB95995.1| putative HrcR [Pseudomonas cichorii] Length = 40 Score = 46.5 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 19/40 (47%), Positives = 31/40 (77%) Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +A+GM M+ P +ISLP K++ FVL+DGW+ L++ L S++ Sbjct: 1 LALGMQMVAPMTISLPLKILLFVLVDGWTRLLDGLFYSYM 40 >gi|51587254|emb|CAE53645.1| putative HrcR protein [Pseudomonas salomonii] Length = 50 Score = 46.5 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 39/50 (78%) Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +ID+IV+ +++A+GM M+ P +ISLP K++ V++ GWS L+++L S++ Sbjct: 1 VIDLIVSNLLLALGMQMVSPMTISLPLKLLLSVMVSGWSRLLDSLFFSYL 50 >gi|190694824|gb|ACE88959.1| HrcR [Pseudomonas fluorescens] Length = 47 Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 37/47 (78%) Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +IV+ +++A+GM M+ P +ISLP K++ FV++ GWS L+++L S++ Sbjct: 1 LIVSNLLLALGMQMVSPMTISLPLKLLLFVMVSGWSRLLDSLFFSYL 47 >gi|226446413|gb|ACO58572.1| HrcR [Pseudomonas fluorescens] Length = 46 Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 36/46 (78%) Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 IV+ +++A+GM M+ P +ISLP K++ FV++ GWS L+++L S++ Sbjct: 1 IVSNLLLALGMQMVSPMTISLPLKLLLFVMVSGWSRLLDSLFLSYL 46 >gi|270488968|ref|ZP_06206042.1| flagellar biosynthesis protein FliP domain protein [Yersinia pestis KIM D27] gi|270337472|gb|EFA48249.1| flagellar biosynthesis protein FliP domain protein [Yersinia pestis KIM D27] Length = 41 Score = 44.6 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 23/41 (56%), Positives = 35/41 (85%) Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 ++AMGMMM+ P ++SLPFK++ FVL+DGWSL++ LV S++ Sbjct: 1 MLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL 41 >gi|9663110|emb|CAC01118.1| FliP flagellar protein, truncated [Helicobacter pylori] Length = 51 Score = 43.1 bits (100), Expect = 0.032, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 28/45 (62%) Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPP 83 + + T+L +AP L++++T F R I+VFS LRT +G PP Sbjct: 4 TLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQTPP 48 >gi|130855423|gb|ABO32589.1| SpaP [Sodalis endosymbiont of Craterina melbae] Length = 48 Score = 42.3 bits (98), Expect = 0.055, Method: Composition-based stats. Identities = 15/35 (42%), Positives = 27/35 (77%) Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 MM+ P ++S+P K++ FV++DGW+LL + LV ++ Sbjct: 1 MMMSPITLSVPIKLVLFVVLDGWTLLSQGLVLQYL 35 >gi|51587258|emb|CAE53648.1| putative HrcR protein [Pseudomonas gingeri] Length = 53 Score = 41.9 bits (97), Expect = 0.078, Method: Composition-based stats. Identities = 25/53 (47%), Positives = 43/53 (81%) Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 PF++ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GWS L+++L S++ Sbjct: 1 PFIVIDLIVSNLLLALGMQMVSPMTISLPLKLLLFVLVQGWSRLLDSLFYSYL 53 >gi|321399625|emb|CBJ44634.1| putative type III secretion system protein HcrR [Pseudomonas sp. MTE-48-204] gi|321399629|emb|CBJ44637.1| putative type III secretion system protein HcrR [Pseudomonas sp. MTE-48-205] Length = 53 Score = 41.9 bits (97), Expect = 0.081, Method: Composition-based stats. Identities = 24/53 (45%), Positives = 43/53 (81%) Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 PF++ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GW+ L+++L S++ Sbjct: 1 PFIVIDLIVSNLLLALGMQMVSPMTISLPLKLLLFVLVQGWTRLLDSLFYSYL 53 >gi|321399653|emb|CBJ44655.1| putative type III secretion system protein HcrR [Pseudomonas sp. MTR-J5-327] Length = 52 Score = 40.7 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 42/52 (80%) Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 F++ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GW+ L+++L S++ Sbjct: 1 FIVIDLIVSNLLLALGMQMVSPMTISLPLKLLLFVLVQGWTRLLDSLFYSYL 52 >gi|331005461|ref|ZP_08328840.1| hypothetical protein IMCC1989_1974 [gamma proteobacterium IMCC1989] gi|330420737|gb|EGG95024.1| hypothetical protein IMCC1989_1974 [gamma proteobacterium IMCC1989] Length = 39 Score = 40.7 bits (94), Expect = 0.20, Method: Composition-based stats. Identities = 20/37 (54%), Positives = 31/37 (83%) Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 MGM+M+PP ISLP K++ F+LIDGW ++ ++L++SF Sbjct: 1 MGMLMVPPMMISLPIKILMFILIDGWFIVTKSLMESF 37 >gi|51587266|emb|CAE53654.1| putative HrcR [Pseudomonas fluorescens bv. I] gi|51587322|emb|CAE53696.1| putative HrcR [Pseudomonas sp. CFBP 11402] Length = 53 Score = 40.4 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 25/53 (47%), Positives = 43/53 (81%) Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 PF++ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GWS L+++L S++ Sbjct: 1 PFIVIDLIVSNLLLALGMQMVSPMTISLPLKLLLFVLVSGWSRLLDSLFLSYL 53 >gi|321399836|emb|CBJ44673.1| putative type III secretion system protein HcrR [Pseudomonas sp. MTR-J5-721] Length = 53 Score = 40.0 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 23/53 (43%), Positives = 42/53 (79%) Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 PF++I +IV+ +++A+GM M+ P +ISLP K++ FVL+ GW+ L+++L S++ Sbjct: 1 PFIVIGLIVSNLLLALGMQMVSPMTISLPLKLLLFVLVQGWTRLLDSLFYSYL 53 >gi|51587246|emb|CAE53639.1| putative HrcR protein [Pseudomonas syringae pv. syringae] gi|51587250|emb|CAE53642.1| putative HrcR protein [Pseudomonas syringae pv. phaseolicola] Length = 53 Score = 38.8 bits (89), Expect = 0.63, Method: Composition-based stats. Identities = 24/53 (45%), Positives = 43/53 (81%) Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 PF++ID+IV+ +++A+GM M+ P ++SLP K++ FVL+ GWS L+++L S++ Sbjct: 1 PFIVIDLIVSNLLLALGMQMVSPMTLSLPLKLLLFVLVSGWSRLLDSLFYSYM 53 >gi|284810383|gb|ADB95983.1| putative HrcR [Pseudomonas cichorii] gi|284810395|gb|ADB95992.1| putative HrcR [Pseudomonas cichorii] gi|284810407|gb|ADB96001.1| putative HrcR [Pseudomonas cichorii] gi|284810411|gb|ADB96004.1| putative HrcR [Pseudomonas cichorii] gi|284810415|gb|ADB96007.1| putative HrcR [Pseudomonas cichorii] Length = 30 Score = 38.8 bits (89), Expect = 0.64, Method: Composition-based stats. Identities = 14/30 (46%), Positives = 23/30 (76%) Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 +ISLP K++ FVL+DGW+ L++ L S++ Sbjct: 1 MTISLPLKILLFVLVDGWTRLLDGLFYSYM 30 >gi|22854670|gb|AAN09754.1| invasion protein [primary endosymbiont of Sitophilus zeamais] Length = 40 Score = 38.4 bits (88), Expect = 0.95, Method: Composition-based stats. Identities = 12/27 (44%), Positives = 21/27 (77%) Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246 S+P K++ FV++DGW+LL + LV ++ Sbjct: 1 SVPIKLVLFVVLDGWTLLSQGLVLQYL 27 >gi|51587270|emb|CAE53657.1| putative HrcR [Pseudomonas fluorescens] Length = 49 Score = 37.3 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 23/49 (46%), Positives = 39/49 (79%) Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GWS L+++L S++ Sbjct: 1 IDLIVSNLLLALGMQMVSPMTISLPLKLLLFVLVSGWSRLLDSLFLSYL 49 >gi|270491106|ref|ZP_06208178.1| conserved domain protein [Yersinia pestis KIM D27] gi|270334849|gb|EFA45628.1| conserved domain protein [Yersinia pestis KIM D27] Length = 57 Score = 37.3 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 29/45 (64%) Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84 + + ++L++ P++ +M T F +F +VFS+LR +G+ +PP Sbjct: 8 INLIIVLSLLTLLPLISVMATSFVKFAVVFSLLRNALGVQQIPPT 52 >gi|300854222|ref|YP_003779206.1| bifunctional flagellar biosynthesis proteins FliR/FlhB [Clostridium ljungdahlii DSM 13528] gi|300434337|gb|ADK14104.1| fusion of flagellar biosynthesis proteins FliR and FlhB [Clostridium ljungdahlii DSM 13528] Length = 606 Score = 36.9 bits (84), Expect = 2.7, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 12/107 (11%) Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210 MA+ D I+ + ++E+ +GFL L F ++ + + M MG Sbjct: 44 MAYILMPGIDYASISSIDNTMFFVMNCLNEVAAGLTLGFLTSLCFSMVRIAGNLMDMQMG 103 Query: 211 MMMLP---PTSISLP---------FKVIFFVLIDGWSLLVENLVKSF 245 M+ PTS S F ++ F ++DG +L+++L++SF Sbjct: 104 FAMVSMFDPTSNSNTTLIERLLYWFSLVIFFIVDGHHMLIKSLIQSF 150 >gi|51587302|emb|CAE53681.1| putative HrcR protein [Pseudomonas fluorescens] Length = 48 Score = 36.5 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 22/48 (45%), Positives = 38/48 (79%) Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 D+IV+ +++A+GM M+ P +ISLP K++ FVL+ GWS L+++L S++ Sbjct: 1 DLIVSNLLLALGMQMVSPMTISLPLKLLLFVLVTGWSRLLDSLFLSYL 48 >gi|254519406|ref|ZP_05131462.1| flagellar biosynthetic protein FlhB [Clostridium sp. 7_2_43FAA] gi|226913155|gb|EEH98356.1| flagellar biosynthetic protein FlhB [Clostridium sp. 7_2_43FAA] Length = 614 Score = 35.7 bits (81), Expect = 6.0, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 12/83 (14%) Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML--------PPTSISLPF---- 223 +MISE+ +G + + F ++ M + I + +G+ M+ T+IS Sbjct: 69 YMISEVTTGLVLGLISNIAFEVVLMAGSLIDVHIGLSMVNTIDPNSKTSTTISGNLLHYV 128 Query: 224 KVIFFVLIDGWSLLVENLVKSFI 246 ++ F ++DG +L+++L++SFI Sbjct: 129 ALMIFFVVDGHHMLIKSLIESFI 151 >gi|192292069|ref|YP_001992674.1| TonB-dependent heme/hemoglobin receptor family protein [Rhodopseudomonas palustris TIE-1] gi|192285818|gb|ACF02199.1| TonB-dependent heme/hemoglobin receptor family protein [Rhodopseudomonas palustris TIE-1] Length = 1186 Score = 35.3 bits (80), Expect = 7.9, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 51/138 (36%), Gaps = 3/138 (2%) Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142 N + L + TF + T+++S QP + + A+P + +R+ Sbjct: 10 SNGRLAVLLMAATFLSTAATVEQSYAQAPQPSRAGAGSRE--LDIQAQPLGSALIAFSRQ 67 Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202 L +F+D A + ++ + L S L F+ G + + + + Sbjct: 68 SRLQIFVDQALVAGKSAPAVRGALTPSAALDRLLAGSGLSYRFKRGGTVTIVGPV-SASM 126 Query: 203 ATIVMAMGMMMLPPTSIS 220 + + G +ML IS Sbjct: 127 NQMPASDGSLMLDTIDIS 144 >gi|83949637|ref|ZP_00958370.1| probable DctP (periplasmic C4-dicarboxylate binding protein) [Roseovarius nubinhibens ISM] gi|83837536|gb|EAP76832.1| probable DctP (periplasmic C4-dicarboxylate binding protein) [Roseovarius nubinhibens ISM] Length = 321 Score = 35.3 bits (80), Expect = 8.3, Method: Composition-based stats. Identities = 17/119 (14%), Positives = 40/119 (33%), Gaps = 8/119 (6%) Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130 + +G + V + A+ M DR +++ P + N E AI Sbjct: 52 FPASALGDYTTVQERVSVG-AIDMATQPAGAGADRRMQISSFPYLANTWDEARAIYGPDG 110 Query: 131 PFWVFMRNNTREKDLSL-------FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182 P M + +D+++ F ++ ++ + ++ +P +L Sbjct: 111 PVRNVMAELYQAQDITMLAAYPVYFGGISLNTEAVHPGDPSQKNGIKVRVPGIKSFQLT 169 >gi|39936343|ref|NP_948619.1| heme receptor [Rhodopseudomonas palustris CGA009] gi|39650198|emb|CAE28721.1| possible heme receptor [Rhodopseudomonas palustris CGA009] Length = 1191 Score = 35.0 bits (79), Expect = 9.0, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 51/138 (36%), Gaps = 3/138 (2%) Query: 83 PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142 N + L + TF + T+++S QP + + A+P + +R+ Sbjct: 15 SNGRLAVLLMAATFLSTAATVEQSYAQAPQPSRAGASSRE--LDIQAQPLGSALIAFSRQ 72 Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202 L +F+D A + ++ + L S L F+ G + + + + Sbjct: 73 SRLQIFVDQALVAGKSAPAVRGALTPSAALDRLLAGSGLSYRFKRGGTVTIVGPV-SASM 131 Query: 203 ATIVMAMGMMMLPPTSIS 220 + + G +ML IS Sbjct: 132 NQMPASDGSLMLDTIDIS 149 >gi|330947078|gb|EGH47860.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. pisi str. 1704B] Length = 28 Score = 35.0 bits (79), Expect = 9.5, Method: Composition-based stats. Identities = 14/25 (56%), Positives = 20/25 (80%) Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245 +PFK++ FVL+DGW+L+V L SF Sbjct: 1 MPFKIMLFVLVDGWALIVGTLAGSF 25 >gi|114145447|ref|NP_001041460.1| zinc finger protein 40 [Ciona intestinalis] gi|93002990|tpd|FAA00078.1| TPA: zinc finger protein [Ciona intestinalis] Length = 1382 Score = 35.0 bits (79), Expect = 9.7, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 34/81 (41%), Gaps = 5/81 (6%) Query: 69 FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMG---IQPLMNNQITETTAI 125 S +R +G+ + N +I+ A +T ++ +PT + E+ P + T Sbjct: 207 LSTVRQCVGIATSLRN--LIARACSLTVFISNPTPEHYFEVAKIHKTPYNKEKDTSIDCT 264 Query: 126 QRVAEPFWVFMRNNTREKDLS 146 ++ +++ N K L+ Sbjct: 265 AQLRFELLEYLKRNWPSKFLT 285 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.320 0.141 0.395 Lambda K H 0.267 0.0430 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,365,233,336 Number of Sequences: 14124377 Number of extensions: 171164755 Number of successful extensions: 1197574 Number of sequences better than 10.0: 2167 Number of HSP's better than 10.0 without gapping: 3136 Number of HSP's successfully gapped in prelim test: 597 Number of HSP's that attempted gapping in prelim test: 1188632 Number of HSP's gapped (non-prelim): 4294 length of query: 246 length of database: 4,842,793,630 effective HSP length: 135 effective length of query: 111 effective length of database: 2,936,002,735 effective search space: 325896303585 effective search space used: 325896303585 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (20.8 bits) S2: 79 (35.0 bits)