BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780372|ref|YP_003064785.1| flagellar biosynthesis protein
FliP [Candidatus Liberibacter asiaticus str. psy62]
         (246 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780372|ref|YP_003064785.1| flagellar biosynthesis protein FliP [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040049|gb|ACT56845.1| flagellar biosynthesis protein FliP [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 246

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 246/246 (100%), Positives = 246/246 (100%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT
Sbjct: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
           CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT
Sbjct: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
           ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE
Sbjct: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN
Sbjct: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240

Query: 241 LVKSFI 246
           LVKSFI
Sbjct: 241 LVKSFI 246


>gi|315121841|ref|YP_004062330.1| flagellar biosynthesis protein FliP [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495243|gb|ADR51842.1| flagellar biosynthesis protein FliP [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 246

 Score =  434 bits (1117), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 211/246 (85%), Positives = 232/246 (94%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           MIRY FF  F V PE VFA+SSLHD+M IP +LS+STWIVRTFG+FTILSI PILLIMVT
Sbjct: 1   MIRYLFFGFFFVVPESVFAQSSLHDIMEIPPNLSVSTWIVRTFGLFTILSIVPILLIMVT 60

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
           CFPRFIIVFSILRTGMGMGS+PPNLVIISLALFMTFYVMSPTLDRSIEMG+QPL++N+IT
Sbjct: 61  CFPRFIIVFSILRTGMGMGSIPPNLVIISLALFMTFYVMSPTLDRSIEMGVQPLISNKIT 120

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
           ET AI+R+AEPFW+FM+NNTREKDL LFM+MA S+H+NTDI K+DHIEYRILIPSFMISE
Sbjct: 121 ETVAIKRIAEPFWIFMKNNTREKDLFLFMEMAKSTHKNTDIKKDDHIEYRILIPSFMISE 180

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK+IFFVLIDGW LLVEN
Sbjct: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKIIFFVLIDGWGLLVEN 240

Query: 241 LVKSFI 246
           LV+SF+
Sbjct: 241 LVRSFV 246


>gi|86356318|ref|YP_468210.1| flagellar biosynthesis protein FliP [Rhizobium etli CFN 42]
 gi|86280420|gb|ABC89483.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CFN
           42]
          Length = 245

 Score =  326 bits (836), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 154/246 (62%), Positives = 200/246 (81%), Gaps = 3/246 (1%)

Query: 1   MIRY-CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           MIR+  F A  +  PEL  A+    D++N+P D S++ WI+RTFG+ T+LS+AP +LIMV
Sbjct: 1   MIRFIVFLAAMMAVPELAVAQQLPTDLLNVPVDGSVAAWIIRTFGLLTVLSVAPGILIMV 60

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T FPRF+I FSILR+GMG+ S P N++++SL+LFMTFYVMSPT D++ + G+QPL+ NQI
Sbjct: 61  TSFPRFVIAFSILRSGMGLSSTPSNMILLSLSLFMTFYVMSPTFDQAWQNGVQPLLANQI 120

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
            ET A+QR+AEPF  FM  NTR+KDL+LF+D+A    R  +I   D I+YR+LIP+FMIS
Sbjct: 121 NETEAVQRIAEPFRTFMAANTRDKDLALFVDLAR--ERGQNIQTTDPIDYRVLIPAFMIS 178

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           E+RR FEIGFL++LPFL+ID+IVATI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV 
Sbjct: 179 EIRRGFEIGFLVVLPFLVIDLIVATITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVG 238

Query: 240 NLVKSF 245
           +LV+SF
Sbjct: 239 SLVRSF 244


>gi|116250488|ref|YP_766326.1| flagellar biosynthesis protein FliP [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|241203112|ref|YP_002974208.1| flagellar biosynthesis protein FliP [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|115255136|emb|CAK06210.1| putative flagellar biosynthetic protein FliP [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|240857002|gb|ACS54669.1| flagellar biosynthetic protein FliP [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 245

 Score =  326 bits (835), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 156/246 (63%), Positives = 199/246 (80%), Gaps = 3/246 (1%)

Query: 1   MIRY-CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           MIR   F A  +  PEL  A+    D++N+P D S++ WI+RTFG+ TILS+AP +LIMV
Sbjct: 1   MIRLIVFLAAMMAVPELAVAQQLPTDLLNVPVDGSVAAWIIRTFGLLTILSVAPGILIMV 60

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T FPRFII FSILR+GMG+ S P N++++SL+LFMTFYVMSPT D++ + G+QPL+ NQI
Sbjct: 61  TSFPRFIIAFSILRSGMGLSSTPSNMILLSLSLFMTFYVMSPTFDQAWQNGVQPLLANQI 120

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
            ET A+QR+AEPF  FM  NTR+KDL+LF+D+A    R  +I   D I+YR+LIP+FMIS
Sbjct: 121 NETEAVQRIAEPFRTFMAANTRDKDLALFVDLAR--ERGQNIQTTDPIDYRVLIPAFMIS 178

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           E+RR FEIGFL++LPFL+ID+IVATI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV 
Sbjct: 179 EIRRGFEIGFLVVLPFLVIDLIVATITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVG 238

Query: 240 NLVKSF 245
           +LV+SF
Sbjct: 239 SLVRSF 244


>gi|190890369|ref|YP_001976911.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CIAT
           652]
 gi|190695648|gb|ACE89733.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CIAT
           652]
 gi|327193042|gb|EGE59954.1| flagellar biosynthesis transmembrane protein [Rhizobium etli
           CNPAF512]
          Length = 245

 Score =  325 bits (834), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 154/246 (62%), Positives = 200/246 (81%), Gaps = 3/246 (1%)

Query: 1   MIRYC-FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           MIR+  F A  +  PEL  A+    D++N+P D S++ WI+RTFG+ T+LS+AP +LIMV
Sbjct: 1   MIRFIIFLAAMMAVPELAVAQQLPTDLLNVPVDGSVAAWIIRTFGLLTVLSVAPGILIMV 60

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T FPRF+I FSILR+GMG+ S P N++++SL+LFMTFYVMSPT D++ + G+QPL+ NQI
Sbjct: 61  TSFPRFVIAFSILRSGMGISSTPSNMILLSLSLFMTFYVMSPTFDQAWQNGVQPLLANQI 120

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
            ET A+QR+AEPF  FM  NTR+KDL+LF+D+A    R  +I   D I+YR+LIP+FMIS
Sbjct: 121 NETEAVQRIAEPFRTFMAANTRDKDLALFVDLAR--ERGQNIQTTDPIDYRVLIPAFMIS 178

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           E+RR FEIGFL++LPFL+ID+IVATI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV 
Sbjct: 179 EIRRGFEIGFLVVLPFLVIDLIVATITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVG 238

Query: 240 NLVKSF 245
           +LV+SF
Sbjct: 239 SLVRSF 244


>gi|209547934|ref|YP_002279851.1| flagellar biosynthesis protein FliP [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533690|gb|ACI53625.1| flagellar biosynthetic protein FliP [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 245

 Score =  325 bits (832), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 156/246 (63%), Positives = 198/246 (80%), Gaps = 3/246 (1%)

Query: 1   MIRY-CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           MIR   F A  +  PEL  A+    D++N+P D S++ WI+RTFG+ TILS+AP +LIMV
Sbjct: 1   MIRLIVFLAAMMAVPELAVAQQLPTDLLNVPVDGSVAAWIIRTFGLLTILSVAPGILIMV 60

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T FPRFII FSILR+GMG+ S P N++++SL+LFMTFYVMSPT D++ + G+QPL+ NQI
Sbjct: 61  TSFPRFIIAFSILRSGMGLSSTPSNMILLSLSLFMTFYVMSPTFDQAWQNGVQPLLANQI 120

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
            ET A+QR+AEPF  FM  NTR+KDL+LF+D+A    R   I   D I+YR+LIP+FMIS
Sbjct: 121 NETEAVQRIAEPFRTFMAANTRDKDLALFVDLAR--ERGQTIQTTDPIDYRVLIPAFMIS 178

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           E+RR FEIGFL++LPFL+ID+IVATI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV 
Sbjct: 179 EIRRGFEIGFLVVLPFLVIDLIVATITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVG 238

Query: 240 NLVKSF 245
           +LV+SF
Sbjct: 239 SLVRSF 244


>gi|218460348|ref|ZP_03500439.1| flagellar biosynthesis protein FliP [Rhizobium etli Kim 5]
          Length = 245

 Score =  324 bits (831), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 154/246 (62%), Positives = 199/246 (80%), Gaps = 3/246 (1%)

Query: 1   MIRYC-FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           MIR+  F    +  PEL  A+    D++N+P D S++ WI+RTFG+ TILS+AP +LIMV
Sbjct: 1   MIRFIIFLTAMMAVPELAVAQQLPTDLLNVPVDGSVAAWIIRTFGLLTILSVAPGILIMV 60

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T FPRF+I FSILR+GMG+ S P N++++SL+LFMTFYVMSPT D++ + G+QPL+ NQI
Sbjct: 61  TSFPRFVIAFSILRSGMGLSSTPSNMILLSLSLFMTFYVMSPTFDQAWQSGVQPLLANQI 120

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
            ET A+QR+AEPF  FM  NTR+KDL+LF+D+A    R   I  +D I+YR+LIP+FMIS
Sbjct: 121 NETEAVQRIAEPFRTFMAANTRDKDLALFVDLAR--ERGQTIQTSDPIDYRVLIPAFMIS 178

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           E+RR FEIGFL++LPFL+ID+IVATI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV 
Sbjct: 179 EIRRGFEIGFLVVLPFLVIDLIVATITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVG 238

Query: 240 NLVKSF 245
           +LV+SF
Sbjct: 239 SLVRSF 244


>gi|222084871|ref|YP_002543400.1| flagellar biosynthesis transmembrane protein [Agrobacterium
           radiobacter K84]
 gi|221722319|gb|ACM25475.1| flagellar biosynthesis transmembrane protein [Agrobacterium
           radiobacter K84]
          Length = 252

 Score =  309 bits (792), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 147/239 (61%), Positives = 194/239 (81%), Gaps = 6/239 (2%)

Query: 11  LVTPELVFAKSSLH----DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
           +++PEL  A+        D++N P + S++ WI+RTFG+ TILSIAP +LIMVT FPRFI
Sbjct: 15  ILSPELAMAQQLSQQIPTDLLNTPVNGSVAAWIIRTFGLLTILSIAPGILIMVTSFPRFI 74

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           I FSILR+GMG+ + P N++++SLALFMTFYVMSPT D++ + G QPL+ NQI+E  A+ 
Sbjct: 75  IAFSILRSGMGLATTPSNMILLSLALFMTFYVMSPTFDQAWKDGAQPLLANQISEADAVM 134

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           R+AEPF  FM NNTR+KD+ LF+D+A    R   +  ++ I+YR+LIP+FMISE+RR FE
Sbjct: 135 RIAEPFRTFMANNTRDKDIKLFVDLAQ--ERGQTVVIDNKIDYRVLIPAFMISEIRRGFE 192

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGFL++LPFL+ID+IV+TIVMAMGMMMLPPTSISLPFK++FFVLIDGW+LLV +LV+SF
Sbjct: 193 IGFLVVLPFLVIDLIVSTIVMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVGSLVRSF 251


>gi|15887892|ref|NP_353573.1| flagellar biosynthesis protein FliP [Agrobacterium tumefaciens str.
           C58]
 gi|2494560|sp|Q44344|FLIP_AGRT5 RecName: Full=Flagellar biosynthetic protein fliP
 gi|1086567|gb|AAB68974.1| FliP [Agrobacterium tumefaciens]
 gi|2459720|gb|AAB71796.1| FliP [Agrobacterium tumefaciens]
 gi|15155484|gb|AAK86358.1| flagellar biosynthetic protein [Agrobacterium tumefaciens str. C58]
          Length = 245

 Score =  306 bits (785), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 147/246 (59%), Positives = 193/246 (78%), Gaps = 3/246 (1%)

Query: 1   MIRYCF-FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           MIR+    A+ L  P L  A+    D+ N   D S++ WI+RTFG+ T+LS+AP +LIMV
Sbjct: 1   MIRFLVTIAVLLALPGLANAQQFPSDLFNTQIDGSVAAWIIRTFGLLTVLSVAPGILIMV 60

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T FPRF+I FSILR+GMG+ S P N++++S+A+FMTFYVMSPT D++   G+QPL+ NQI
Sbjct: 61  TSFPRFVIAFSILRSGMGLASTPSNMILLSMAMFMTFYVMSPTFDKAWTDGVQPLLQNQI 120

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
            E  A+QR+AEPF  FM  NTR+KDL LF+D+A    R   +  ++ ++YR+L+P+FM+S
Sbjct: 121 NEQQAVQRIAEPFRTFMNANTRDKDLKLFVDIAR--ERGQVVMTDNVVDYRVLVPAFMLS 178

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           E+RR FEIGFLIILPFL+ID+IVATI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV 
Sbjct: 179 EIRRGFEIGFLIILPFLVIDLIVATITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVG 238

Query: 240 NLVKSF 245
           +LV+SF
Sbjct: 239 SLVRSF 244


>gi|222147577|ref|YP_002548534.1| flagellar biosynthesis protein FliP [Agrobacterium vitis S4]
 gi|221734565|gb|ACM35528.1| flagellar biosynthetic protein [Agrobacterium vitis S4]
          Length = 245

 Score =  306 bits (783), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 148/246 (60%), Positives = 193/246 (78%), Gaps = 3/246 (1%)

Query: 1   MIR-YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           MIR     A  +  PEL  A+    + +  P D S++ WI+RTFG+ T+LS+AP +LIMV
Sbjct: 1   MIRTLILIAAMIAAPELAQAQQLPSNFLTAPVDGSVAAWIIRTFGLLTVLSVAPGILIMV 60

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T FPRF+I FSILR+GMG+ S P N+++ SLALFMTFYVM+P +D++   G++PL++NQI
Sbjct: 61  TSFPRFVIAFSILRSGMGLSSTPSNMILTSLALFMTFYVMTPVMDQAWRDGVRPLLDNQI 120

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           TE  A+ R+AEPF  FM NNTREKDL LF+D+A+   + T +     ++YR+LIP+FM+S
Sbjct: 121 TEAEAVPRIAEPFRGFMSNNTREKDLRLFIDLANERGQTTVV--EGKVDYRVLIPAFMLS 178

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           E+RR FEIGFLIILPFL+IDMIV+TI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV 
Sbjct: 179 EIRRGFEIGFLIILPFLVIDMIVSTITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVG 238

Query: 240 NLVKSF 245
           +LV+SF
Sbjct: 239 SLVRSF 244


>gi|325291933|ref|YP_004277797.1| flagellar biosynthesis protein FliP [Agrobacterium sp. H13-3]
 gi|325059786|gb|ADY63477.1| flagellar biosynthesis protein FliP [Agrobacterium sp. H13-3]
          Length = 245

 Score =  302 bits (774), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 146/246 (59%), Positives = 192/246 (78%), Gaps = 3/246 (1%)

Query: 1   MIRYCF-FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           MIR+    A+ +  P L  A+    D+ N   D S++ WI+RTFG+ T+LS+AP +LIMV
Sbjct: 1   MIRFLVTIAVLVALPGLANAQQFPTDLFNTQIDGSVAAWIIRTFGLLTVLSVAPGILIMV 60

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T FPRF+I FSILR+GMG+ S P N++++S+A+FMTFYVMSPT D++   G+QPL+ NQI
Sbjct: 61  TSFPRFVIAFSILRSGMGLASTPSNMILLSMAMFMTFYVMSPTFDKAWTDGVQPLLQNQI 120

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
            E  AI R+AEPF  FM  NTR+KDL LF+D+A    R   +  ++ ++YR+L+P+FM+S
Sbjct: 121 NEQQAIGRIAEPFRTFMNANTRDKDLKLFVDIAR--ERGQVVMTDNVVDYRVLVPAFMLS 178

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           E+RR FEIGFLIILPFL+ID+IVATI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV 
Sbjct: 179 EIRRGFEIGFLIILPFLVIDLIVATITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVG 238

Query: 240 NLVKSF 245
           +LV+SF
Sbjct: 239 SLVRSF 244


>gi|307318918|ref|ZP_07598349.1| flagellar biosynthetic protein FliP [Sinorhizobium meliloti AK83]
 gi|12057226|gb|AAB81419.2| FliP [Sinorhizobium meliloti]
 gi|306895332|gb|EFN26087.1| flagellar biosynthetic protein FliP [Sinorhizobium meliloti AK83]
          Length = 245

 Score =  299 bits (765), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 142/247 (57%), Positives = 197/247 (79%), Gaps = 3/247 (1%)

Query: 1   MIRYCFFALFLVT-PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           M+R+  F + ++    +  A+S   D++N P D S+++WI+RTFG+ T+LS+AP +LIMV
Sbjct: 1   MLRFATFIIAMMAMSGIAGAQSFPADILNTPVDGSVASWIIRTFGLLTVLSVAPGILIMV 60

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T FPRF+I F+ILR+GMG+ + P N++++SLALFMTFYVM+PT DR+   GI PL+ N+I
Sbjct: 61  TSFPRFVIAFAILRSGMGLATTPSNMIMVSLALFMTFYVMAPTFDRAWRDGIDPLLKNEI 120

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           +ET AIQR++EPF  FM  NTR+KDL LF+D+A    +   +  ++ ++ R ++P+FMIS
Sbjct: 121 SETDAIQRMSEPFREFMLANTRDKDLQLFIDIAR--EKGQTVVVDEKVDLRAVVPAFMIS 178

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           E+RR FEIGFLI+LPFL+ID+IVATI MAMGMMMLPPT+ISLPFK++FFVLIDGW+LLV 
Sbjct: 179 EIRRGFEIGFLIMLPFLVIDLIVATITMAMGMMMLPPTAISLPFKILFFVLIDGWNLLVG 238

Query: 240 NLVKSFI 246
           +LV+SFI
Sbjct: 239 SLVRSFI 245


>gi|15964421|ref|NP_384774.1| flagellar biosynthesis protein FliP [Sinorhizobium meliloti 1021]
 gi|307311563|ref|ZP_07591204.1| flagellar biosynthetic protein FliP [Sinorhizobium meliloti BL225C]
 gi|17380428|sp|P37827|FLIP_RHIME RecName: Full=Flagellar biosynthetic protein fliP
 gi|15073598|emb|CAC45240.1| Flagellar biosynthetic transmembrane protein [Sinorhizobium
           meliloti 1021]
 gi|306899580|gb|EFN30209.1| flagellar biosynthetic protein FliP [Sinorhizobium meliloti BL225C]
          Length = 245

 Score =  298 bits (762), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 141/247 (57%), Positives = 197/247 (79%), Gaps = 3/247 (1%)

Query: 1   MIRYCFFALFLVT-PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           M+R+  F + ++    +  A+S   D++N P D S+++WI+RTFG+ T+LS+AP +LIMV
Sbjct: 1   MLRFATFIIAMMAMSGIAGAQSFPADILNTPVDGSVASWIIRTFGLLTVLSVAPGILIMV 60

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T FPRF+I F+ILR+GMG+ + P N++++SLALFMTFYVM+PT DR+   GI PL+ N+I
Sbjct: 61  TSFPRFVIAFAILRSGMGLATTPSNMIMVSLALFMTFYVMAPTFDRAWRDGIDPLLKNEI 120

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           +ET A+QR++EPF  FM  NTR+KDL LF+D+A    +   +  ++ ++ R ++P+FMIS
Sbjct: 121 SETDAMQRMSEPFREFMVANTRDKDLQLFIDIAR--EKGQTVVVDEKVDLRAVVPAFMIS 178

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           E+RR FEIGFLI+LPFL+ID+IVATI MAMGMMMLPPT+ISLPFK++FFVLIDGW+LLV 
Sbjct: 179 EIRRGFEIGFLIMLPFLVIDLIVATITMAMGMMMLPPTAISLPFKILFFVLIDGWNLLVG 238

Query: 240 NLVKSFI 246
           +LV+SFI
Sbjct: 239 SLVRSFI 245


>gi|150395491|ref|YP_001325958.1| flagellar biosynthesis protein FliP [Sinorhizobium medicae WSM419]
 gi|150027006|gb|ABR59123.1| flagellar biosynthetic protein FliP [Sinorhizobium medicae WSM419]
          Length = 245

 Score =  297 bits (760), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 140/247 (56%), Positives = 196/247 (79%), Gaps = 3/247 (1%)

Query: 1   MIRYCFFALFLVT-PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           M+R+  F + ++    +  A+    D++N P D S+++WI+RTFG+ T+LS+AP +LIMV
Sbjct: 1   MLRFATFIIAMMAMSGIAGAQGFPADILNTPVDGSVASWIIRTFGLLTVLSVAPGILIMV 60

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T FPRF+I F+ILR+GMG+ + P N++++SLALFMTFYVM+PT DR+   GI PL+ N+I
Sbjct: 61  TSFPRFVIAFAILRSGMGLATTPSNMIMVSLALFMTFYVMAPTFDRAWRDGIDPLLKNEI 120

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           +ET A+QR++EPF  FM  NTR+KDL LF+D+A    +   +  ++ ++ R ++P+FMIS
Sbjct: 121 SETEAMQRMSEPFREFMLANTRDKDLQLFIDIAQ--EKGQTVVVDEKVDLRAVVPAFMIS 178

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           E+RR FEIGFLI+LPFL+ID+IVATI MAMGMMMLPPT+ISLPFK++FFVLIDGW+LLV 
Sbjct: 179 EIRRGFEIGFLIMLPFLVIDLIVATITMAMGMMMLPPTAISLPFKILFFVLIDGWNLLVG 238

Query: 240 NLVKSFI 246
           +LV+SFI
Sbjct: 239 SLVRSFI 245


>gi|227820864|ref|YP_002824834.1| flagellar biosynthesis protein FliP [Sinorhizobium fredii NGR234]
 gi|227339863|gb|ACP24081.1| flagellar biosynthetic protein FliP [Sinorhizobium fredii NGR234]
          Length = 245

 Score =  296 bits (759), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 138/227 (60%), Positives = 186/227 (81%), Gaps = 2/227 (0%)

Query: 19  AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           A+S   D++N P D S+++WI+RTFG+ T+LS+AP +LIMVT FPRF+I F+ILR+GMG+
Sbjct: 20  AQSFPADILNTPVDGSVASWIIRTFGLLTVLSVAPGILIMVTSFPRFVIAFAILRSGMGL 79

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
            + P N++++SLALFMTFYVM+PT DR+   GI PL+ N+I+ET A+ RV+EPF  FM  
Sbjct: 80  ATTPSNMIMVSLALFMTFYVMAPTFDRAWREGIDPLLKNEISETEALPRVSEPFREFMLA 139

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
           NTR+KDL LF+D+A    +   +  +D ++ R ++P+FMISE+RR FEIGFLI+LPFL+I
Sbjct: 140 NTRDKDLQLFIDIAR--EKGQTVVVDDKVDLRAVVPAFMISEIRRGFEIGFLIMLPFLVI 197

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           D+IV+TI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV +LV+SF
Sbjct: 198 DLIVSTITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVGSLVRSF 244


>gi|218658525|ref|ZP_03514455.1| flagellar biosynthesis protein FliP [Rhizobium etli IE4771]
          Length = 238

 Score =  296 bits (757), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 139/206 (67%), Positives = 177/206 (85%), Gaps = 2/206 (0%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +RTFG+ TILS+AP +LIMVT FPRF+I FSILR+GMG+ S P N++++SL+LFMTFYVM
Sbjct: 34  IRTFGLLTILSVAPGILIMVTSFPRFVIAFSILRSGMGLSSTPSNMILLSLSLFMTFYVM 93

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SPT D++ + G+QPL+ NQI ET A+QR+AEPF  FM  NTR+KDL+LF+D+A    R  
Sbjct: 94  SPTFDQAWQSGVQPLLANQINETEAVQRIAEPFRTFMAANTRDKDLALFVDLAR--ERGQ 151

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           +I  +D I+YR+LIP+FMISE+RR FEIGFL++LPFL+ID+IVATI MAMGMMMLPPTSI
Sbjct: 152 NIQTSDPIDYRVLIPAFMISEIRRGFEIGFLVVLPFLVIDLIVATITMAMGMMMLPPTSI 211

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++FFVLIDGW+LLV +LV+SF
Sbjct: 212 SLPFKILFFVLIDGWNLLVGSLVRSF 237


>gi|163758021|ref|ZP_02165109.1| putative flagellar biosynthetic protein FliP [Hoeflea phototrophica
           DFL-43]
 gi|162284310|gb|EDQ34593.1| putative flagellar biosynthetic protein FliP [Hoeflea phototrophica
           DFL-43]
          Length = 245

 Score =  292 bits (747), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 136/228 (59%), Positives = 186/228 (81%), Gaps = 2/228 (0%)

Query: 19  AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           A++    ++  P D S+++WI+RTFG+ T+LS+AP +LIMVT FPRFII F+ILR GMG+
Sbjct: 20  AQALDPGLLQAPLDGSVASWIIRTFGLLTVLSVAPGILIMVTSFPRFIIAFAILRAGMGL 79

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
            + P N++++SLALFMTFYVM+PT DR+ E G+ PL+ +QITE  AIQ +A+PF  FM  
Sbjct: 80  ATTPANMILVSLALFMTFYVMAPTFDRAWENGVTPLLEDQITEEEAIQLIADPFRDFMLV 139

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
           NTR KDL+LF+D+A    ++T+   +  I+ R+L+P+FMISE+RR FEIGFL++LPFL+I
Sbjct: 140 NTRPKDLALFVDLATERGQSTE--TDGKIDMRVLVPAFMISEIRRGFEIGFLVVLPFLVI 197

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           D++VATI MAMGMMMLPPT+ISLPFK++FFVLIDGW+LLV +LV+SF+
Sbjct: 198 DLVVATITMAMGMMMLPPTAISLPFKILFFVLIDGWNLLVGSLVRSFV 245


>gi|110632650|ref|YP_672858.1| flagellar biosynthesis protein FliP [Mesorhizobium sp. BNC1]
 gi|110283634|gb|ABG61693.1| flagellar biosynthetic protein FliP [Chelativorans sp. BNC1]
          Length = 246

 Score =  281 bits (718), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 137/215 (63%), Positives = 173/215 (80%), Gaps = 2/215 (0%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
           A+ S   +I++ FG+ T+LSIAP +LIMVT F RF+IVFSILRTG+G+ S P NL+++SL
Sbjct: 33  ANGSTIGYIIQIFGLLTVLSIAPGILIMVTSFTRFVIVFSILRTGIGLPSTPANLILVSL 92

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           ALFMTFYVM+PT DR+   G++PLM NQI ETTA++R+AEPF  FM  N RE+D +LF D
Sbjct: 93  ALFMTFYVMAPTFDRAWSEGVRPLMANQIDETTAVERIAEPFRAFMSANVREEDYTLFAD 152

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           +A  + R       D  + R+LIP+FMISE+RR FEIGFLI+LPFL+ID+IVATI MAMG
Sbjct: 153 LA--AERGGIQQTTDQADLRVLIPAFMISEIRRGFEIGFLIVLPFLVIDLIVATITMAMG 210

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMMLPPT ISLPFK++FFVLIDGW+LLV +LV+SF
Sbjct: 211 MMMLPPTVISLPFKILFFVLIDGWNLLVGSLVRSF 245


>gi|121601713|ref|YP_989394.1| flagellar biosynthesis protein FliP [Bartonella bacilliformis
           KC583]
 gi|120613890|gb|ABM44491.1| flagellar biosynthetic protein FliP [Bartonella bacilliformis
           KC583]
          Length = 247

 Score =  275 bits (703), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 130/212 (61%), Positives = 173/212 (81%), Gaps = 3/212 (1%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           S+S WIV+ FG+ T+LS+AP LL+MVT F RF I FS+LR+G+G+ + PPNLV+ISLALF
Sbjct: 39  SVSGWIVQLFGLLTVLSVAPGLLMMVTSFTRFAIAFSLLRSGLGLQTTPPNLVMISLALF 98

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           MTFYVM+PT + + E G+QPLM N+ITE  AI ++++PF  FM +  REKDL LF+D++ 
Sbjct: 99  MTFYVMAPTFNAAWEQGVQPLMKNEITEQQAIDKISQPFREFMISQVREKDLDLFVDLSD 158

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
            S +   +     I++RIL+P+FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMM
Sbjct: 159 PSFQ---VRTGADIDFRILVPAFMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMM 215

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LPPT ISLPFK++FFVLIDGW+LLV +L++SF
Sbjct: 216 LPPTVISLPFKILFFVLIDGWNLLVGSLIRSF 247


>gi|260466613|ref|ZP_05812801.1| flagellar biosynthetic protein FliP [Mesorhizobium opportunistum
           WSM2075]
 gi|259029619|gb|EEW30907.1| flagellar biosynthetic protein FliP [Mesorhizobium opportunistum
           WSM2075]
          Length = 243

 Score =  273 bits (697), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 133/242 (54%), Positives = 183/242 (75%), Gaps = 9/242 (3%)

Query: 10  FLVTPELVFAKSSLHDVMNI------PADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
           FL+   L+ A +S+     +       AD +   +I++ FG+ T+LS+AP LLIMVT F 
Sbjct: 4   FLLAAALIGATTSIAAAQQLDLGGIGKADGTTVGYIIQMFGLLTVLSVAPGLLIMVTSFT 63

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
           RF+I FSILR G+G+ S P NL++ISL+LFMTFYVM+PT D++   G++PLM+NQI++T 
Sbjct: 64  RFVIAFSILRAGIGLQSTPANLILISLSLFMTFYVMAPTFDQAWNTGVKPLMDNQISQTE 123

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
           A  ++++PF  FM +N R+KD  LF D+A    R   +++ D ++ RIL+P+FMISE+RR
Sbjct: 124 AFDKISDPFRTFMLHNVRDKDFDLFADLAR--ERGQTVSR-DTVDLRILVPAFMISEIRR 180

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
            FEIGFLI+LPFL+ID+IVATI MAMGMMMLPPT +SLPFK++FFVLIDGW+LLV +LV+
Sbjct: 181 GFEIGFLIVLPFLVIDLIVATITMAMGMMMLPPTVVSLPFKILFFVLIDGWNLLVGSLVR 240

Query: 244 SF 245
           SF
Sbjct: 241 SF 242


>gi|319409181|emb|CBI82825.1| Flagellar biosynthetic protein fliP [Bartonella schoenbuchensis R1]
          Length = 253

 Score =  271 bits (693), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 137/252 (54%), Positives = 190/252 (75%), Gaps = 11/252 (4%)

Query: 2   IRYCFFALFLVTPEL--VFAK-SSLHDVMNI-----PADLSISTWIVRTFGIFTILSIAP 53
           + + F  L LVT +   VFA+ ++L     +     P D  IS  IV+ FG+ T+LS+AP
Sbjct: 5   VGFVFMMLLLVTTDATDVFAQQTNLASTGGLSGLLAPTDGKISGRIVQLFGLLTVLSVAP 64

Query: 54  ILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQP 113
            LLIMVT F RF+I FS+LR+G+G+ + P NLV+ISLALFMTFYVM+PT + + E G+QP
Sbjct: 65  GLLIMVTSFTRFVIAFSLLRSGLGLQTTPSNLVMISLALFMTFYVMAPTFNTAWEQGVQP 124

Query: 114 LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILI 173
           L+ N+I+E  AI+++++PF  FM +  REKDL LF+D++  S    ++     I++R+L+
Sbjct: 125 LIKNEISEQKAIEKISQPFREFMISQVREKDLDLFVDLSDPSF---NVKTGADIDFRVLV 181

Query: 174 PSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDG 233
           P+FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDG
Sbjct: 182 PAFMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDG 241

Query: 234 WSLLVENLVKSF 245
           W+LLV +L++SF
Sbjct: 242 WNLLVGSLIRSF 253


>gi|319898643|ref|YP_004158736.1| flagellar biosynthetic protein fliP [Bartonella clarridgeiae 73]
 gi|319402607|emb|CBI76152.1| Flagellar biosynthetic protein fliP [Bartonella clarridgeiae 73]
          Length = 250

 Score =  271 bits (692), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 136/243 (55%), Positives = 186/243 (76%), Gaps = 9/243 (3%)

Query: 9   LFLVTPELVFAKSSLHDVMNIPADL------SISTWIVRTFGIFTILSIAPILLIMVTCF 62
           + L+T    FA+    + +N  A L      SIS  IV+ FG+ T+LS+AP LLIMVT F
Sbjct: 11  ILLLTTTGAFAQRVGTENVNSLAGLFFSPGVSISGRIVQLFGLLTVLSVAPGLLIMVTSF 70

Query: 63  PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122
            RF I FS+LRTG+G+ + P NLV+ISLALFM+FYVM+PT + + E G+QPL+NN+I+E 
Sbjct: 71  TRFAIAFSLLRTGLGLQTTPSNLVMISLALFMSFYVMAPTFNTAWEQGVQPLVNNKISEQ 130

Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182
            AI+++++PF  FM +  REKDL LF+D++ SS +   +     +++R+LIP+FMISELR
Sbjct: 131 QAIEKISQPFREFMISQVREKDLDLFVDLSDSSLQ---VKTGADVDFRVLIPAFMISELR 187

Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
           R FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW+LLV +L+
Sbjct: 188 RGFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNLLVGSLI 247

Query: 243 KSF 245
           +SF
Sbjct: 248 RSF 250


>gi|319781675|ref|YP_004141151.1| flagellar biosynthetic protein FliP [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167563|gb|ADV11101.1| flagellar biosynthetic protein FliP [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 243

 Score =  270 bits (691), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 129/215 (60%), Positives = 173/215 (80%), Gaps = 3/215 (1%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
           AD +   +I++ FG+ T+LS+AP LLIMVT F RF+I FSILR G+G+ S P NL++ISL
Sbjct: 31  ADGTTVGYIIQMFGLLTVLSVAPGLLIMVTSFTRFVIAFSILRAGIGLQSTPANLILISL 90

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           +LFMTFYVM+PT D++   G++PLM+NQIT+T A  ++++PF  FM +N R+KD  LF D
Sbjct: 91  SLFMTFYVMAPTFDQAWNTGVKPLMDNQITQTEAFDKISDPFRTFMLHNVRDKDFDLFAD 150

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           +A    R   +++ D ++ RIL+P+FMISE+RR FEIGFLI+LPFL+ID+IVATI MAMG
Sbjct: 151 LAR--ERGQTVSR-DTVDLRILVPAFMISEIRRGFEIGFLIVLPFLVIDLIVATITMAMG 207

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMMLPPT +SLPFK++FFVLIDGW+LLV +LV+SF
Sbjct: 208 MMMLPPTVVSLPFKILFFVLIDGWNLLVGSLVRSF 242


>gi|13472582|ref|NP_104149.1| flagellar biosynthesis protein FliP [Mesorhizobium loti MAFF303099]
 gi|14023328|dbj|BAB49935.1| flagellar biosynthesis protein; FliP [Mesorhizobium loti
           MAFF303099]
          Length = 243

 Score =  270 bits (690), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 126/215 (58%), Positives = 172/215 (80%), Gaps = 3/215 (1%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
           AD +   +I++ FG+ T+LS+AP LLIMVT F RF+I FSILR G+G+ S P NL++ISL
Sbjct: 31  ADGATVGYIIQMFGLLTVLSVAPGLLIMVTSFTRFVIAFSILRAGIGLQSTPANLILISL 90

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           +LFMTFYVM+PT D++   G++PLM+NQI++T A +++++PF  FM +N R+KD  LF D
Sbjct: 91  SLFMTFYVMAPTFDQAWNTGVKPLMDNQISQTEAFEKISDPFRTFMLHNVRDKDFDLFAD 150

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           +A    +   +   + ++ RIL+P+FMISE+RR FEIGFLI+LPFL+ID+IVATI MAMG
Sbjct: 151 LARERGQ---VVAKETVDLRILVPAFMISEIRRGFEIGFLIVLPFLVIDLIVATITMAMG 207

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMMLPPT +SLPFK++FFVLIDGW+LLV +LV+SF
Sbjct: 208 MMMLPPTVVSLPFKILFFVLIDGWNLLVGSLVRSF 242


>gi|319403967|emb|CBI77555.1| Flagellar biosynthetic protein fliP [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 250

 Score =  270 bits (690), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 138/253 (54%), Positives = 189/253 (74%), Gaps = 11/253 (4%)

Query: 1   MIRYCFFAL--FLVTPELVFA-KSSLHDVMNIPA-----DLSISTWIVRTFGIFTILSIA 52
           M R   F L  FL+   + FA K+   +   I       + SIS  IV+ FG+ TILS+A
Sbjct: 1   MKRLGGFVLMIFLLATTVAFAQKTGAENASGIAGLFSYPEGSISGRIVQLFGLLTILSVA 60

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P LLIMVT F RF I FS+LRTG+G+ + P NLV+ISLALFM+FYVM+PT + + E G+Q
Sbjct: 61  PGLLIMVTSFTRFAIAFSLLRTGLGLQTTPSNLVMISLALFMSFYVMAPTFNTAWEEGVQ 120

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           PL+NN+I+E  AI+++++PF  FM +  REKDL LF++++ SS +   +     I++R+L
Sbjct: 121 PLVNNKISEQQAIEKISQPFREFMISQVREKDLDLFVNLSDSSLQ---VKTGSDIDFRVL 177

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           +P+FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVL+D
Sbjct: 178 VPAFMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLVD 237

Query: 233 GWSLLVENLVKSF 245
           GW+LLV +L++SF
Sbjct: 238 GWNLLVGSLIRSF 250


>gi|319405407|emb|CBI79026.1| Flagellar biosynthetic protein fliP [Bartonella sp. AR 15-3]
          Length = 250

 Score =  270 bits (689), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 137/244 (56%), Positives = 187/244 (76%), Gaps = 11/244 (4%)

Query: 9   LFLVTPELVFAK-------SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
           + L+T  + FA+       SSL  + + P   SIS  IV+ FG+ TILS+AP LLIMVT 
Sbjct: 11  ILLLTTTVAFAQKTGPENASSLAGLFSYPEG-SISGRIVQFFGLLTILSVAPGLLIMVTS 69

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F RF I FS+LRTG+G+ + P NLV+ISLALFM+FYVM+PT + + E G+QPL++N+I+E
Sbjct: 70  FTRFAIAFSLLRTGLGLQTTPSNLVMISLALFMSFYVMAPTFNTAWEQGVQPLVSNKISE 129

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
             AI+++++PF  FM +  REKDL LF+D++  S +   +     +++R+LIP+FMISEL
Sbjct: 130 QQAIEKISQPFREFMISQVREKDLDLFVDLSDPSLQ---VKTGSDVDFRVLIPAFMISEL 186

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
           RR FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW+LLV +L
Sbjct: 187 RRGFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNLLVGSL 246

Query: 242 VKSF 245
           V+SF
Sbjct: 247 VRSF 250


>gi|319406982|emb|CBI80619.1| Flagellar biosynthetic protein fliP [Bartonella sp. 1-1C]
          Length = 250

 Score =  268 bits (686), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 137/254 (53%), Positives = 190/254 (74%), Gaps = 13/254 (5%)

Query: 1   MIRYCFFAL--FLVTPELVFAK-------SSLHDVMNIPADLSISTWIVRTFGIFTILSI 51
           M R+  F L  FL+   + FA+       S L  + + P   SIS  IV+ FG+ TILS+
Sbjct: 1   MKRFGGFVLMIFLLATTVAFAQKTGAENASGLAGLFSYPQG-SISGRIVQLFGLLTILSV 59

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP LLIMVT F RF I FS+LRTG+G+ + P NLV+ISLALFM+FYVM+PT + + E G+
Sbjct: 60  APGLLIMVTSFTRFAIAFSLLRTGLGLQTTPSNLVMISLALFMSFYVMAPTFNTAWEDGV 119

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
            PL+NN+I+E  AI+++++PF  FM +  REKDL LF++++ SS +   +     +++R+
Sbjct: 120 HPLVNNKISEQQAIEKISQPFREFMISQVREKDLDLFVNLSDSSLQ---VKTGSDVDFRV 176

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           L+P+FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVL+
Sbjct: 177 LVPAFMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLV 236

Query: 232 DGWSLLVENLVKSF 245
           DGW+LLV +L++SF
Sbjct: 237 DGWNLLVGSLIRSF 250


>gi|114706620|ref|ZP_01439521.1| flagellar biosynthesis protein P [Fulvimarina pelagi HTCC2506]
 gi|114538012|gb|EAU41135.1| flagellar biosynthesis protein P [Fulvimarina pelagi HTCC2506]
          Length = 264

 Score =  263 bits (673), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 141/246 (57%), Positives = 175/246 (71%), Gaps = 9/246 (3%)

Query: 7   FALFLVTPELVFAKSSLHDVMNIP-ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65
           F L  V    +   SSL D+  IP  D +IS  I++ FGI T+LSIAP LL+MVT F R 
Sbjct: 20  FGLGTVAQAQIADPSSLADL--IPQGDGTISGRIIQLFGIVTVLSIAPGLLVMVTAFTRI 77

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
           +I  SI+RTG+G+ + P NL+IISLALFMTF+VMSPT DR+   G+QPL+ N+I E  A 
Sbjct: 78  VIALSIMRTGLGLQTTPANLIIISLALFMTFFVMSPTFDRAWNDGLQPLLENEIDEEEAF 137

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN------TDITKNDHIEYRILIPSFMIS 179
            R+A+PF  FM    R  DL LF D+A  + R+              IE R+LIP+FMIS
Sbjct: 138 YRIADPFKEFMLTQVRPSDLQLFGDIASVTDRDRVQPEEQGAADERDIELRVLIPAFMIS 197

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           ELRR FEIGFLI+LPFL+IDMIVAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW+LLV 
Sbjct: 198 ELRRGFEIGFLIVLPFLVIDMIVATLTMSMGMMMLPPTIISLPFKILFFVLIDGWNLLVG 257

Query: 240 NLVKSF 245
           +LV+SF
Sbjct: 258 SLVRSF 263


>gi|118589975|ref|ZP_01547379.1| flagellar biosynthesis protein [Stappia aggregata IAM 12614]
 gi|118437472|gb|EAV44109.1| flagellar biosynthesis protein [Stappia aggregata IAM 12614]
          Length = 247

 Score =  263 bits (671), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 129/219 (58%), Positives = 168/219 (76%), Gaps = 1/219 (0%)

Query: 29  IPA-DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87
           +PA + S S  I++   + T+LS+AP +LIMVT F RF+I FS LR+G+G+ + P NL++
Sbjct: 29  LPAGEGSASGRIIQMIALLTVLSLAPGILIMVTSFTRFVIAFSFLRSGIGLQTTPGNLIL 88

Query: 88  ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147
           ISLALFMTFYVM+PT D++ E G+QPLMNN+I+E  A  R+  PF  FM +  RE+DL L
Sbjct: 89  ISLALFMTFYVMAPTFDKAWEQGVQPLMNNEISEEEAYVRITTPFRDFMLSQVREEDLVL 148

Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
           F D+A     + +    + ++ R+LIP+FMISELRR FEIGFLI LPFL+IDMIVATI M
Sbjct: 149 FDDLAAGRVTDNEAASAEEVDLRVLIPAFMISELRRGFEIGFLIALPFLVIDMIVATITM 208

Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +MGMMMLPPT ISLPFK +FFVLIDGW+LLV +LV+SF+
Sbjct: 209 SMGMMMLPPTVISLPFKALFFVLIDGWNLLVGSLVRSFL 247


>gi|256059603|ref|ZP_05449801.1| flagellar biosynthesis protein FliP [Brucella neotomae 5K33]
 gi|261323570|ref|ZP_05962767.1| flagellar biosynthetic protein FliP [Brucella neotomae 5K33]
 gi|261299550|gb|EEY03047.1| flagellar biosynthetic protein FliP [Brucella neotomae 5K33]
          Length = 246

 Score =  262 bits (669), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 125/212 (58%), Positives = 168/212 (79%), Gaps = 3/212 (1%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           + S  IV+ FG+ T+LSIAP LLIMVT F RF I FS+LR+G+G+ + P ++V+ISLALF
Sbjct: 37  AASGQIVQLFGLLTVLSIAPGLLIMVTSFTRFAIAFSLLRSGLGLQTAPASMVMISLALF 96

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           MTFYVM+PT DR+   G+QPLM N+IT+  A   +++PF  FM    R+KDL LF D+A 
Sbjct: 97  MTFYVMAPTFDRAWNNGVQPLMRNEITQEAAFGEISQPFREFMMAQVRDKDLRLFEDLAD 156

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
            S R +D   +  +++R+L+P+FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMM
Sbjct: 157 PSFRTSD---DGIVDFRVLVPAFMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMM 213

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LPPT ISLPFK++FFVLIDGW++LV +L++SF
Sbjct: 214 LPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245


>gi|256158112|ref|ZP_05456030.1| flagellar biosynthesis protein FliP [Brucella ceti M490/95/1]
 gi|256252934|ref|ZP_05458470.1| flagellar biosynthesis protein FliP [Brucella ceti B1/94]
 gi|261220025|ref|ZP_05934306.1| flagellar biosynthetic protein FliP [Brucella ceti B1/94]
 gi|265996629|ref|ZP_06109186.1| flagellar biosynthetic protein FliP [Brucella ceti M490/95/1]
 gi|260918609|gb|EEX85262.1| flagellar biosynthetic protein FliP [Brucella ceti B1/94]
 gi|262550926|gb|EEZ07087.1| flagellar biosynthetic protein FliP [Brucella ceti M490/95/1]
          Length = 246

 Score =  260 bits (665), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 124/212 (58%), Positives = 167/212 (78%), Gaps = 3/212 (1%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           + S  IV+ FG+ T+LSIAP LLIMVT F RF I FS+LR+G+G+ + P ++V+ISLALF
Sbjct: 37  AASGQIVQLFGLLTVLSIAPGLLIMVTSFTRFAIAFSLLRSGLGLQTAPASMVMISLALF 96

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           MTFYVM+P  DR+   G+QPLM N+IT+  A   +++PF  FM    R+KDL LF D+A 
Sbjct: 97  MTFYVMAPAFDRAWNNGVQPLMRNEITQEAAFGEISQPFREFMMAQVRDKDLRLFEDLAD 156

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
            S R +D   +  +++R+L+P+FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMM
Sbjct: 157 PSFRTSD---DGIVDFRVLVPAFMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMM 213

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LPPT ISLPFK++FFVLIDGW++LV +L++SF
Sbjct: 214 LPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245


>gi|23499922|ref|NP_699362.1| flagellar biosynthesis protein FliP [Brucella suis 1330]
 gi|148558353|ref|YP_001257218.1| flagellar biosynthesis protein FliP [Brucella ovis ATCC 25840]
 gi|161620242|ref|YP_001594128.1| flagellar biosynthesis protein FliP [Brucella canis ATCC 23365]
 gi|163844351|ref|YP_001622006.1| flagellar biosynthesis protein FliP [Brucella suis ATCC 23445]
 gi|225628631|ref|ZP_03786665.1| flagellar biosynthetic protein FliP [Brucella ceti str. Cudo]
 gi|225686018|ref|YP_002733990.1| flagellar biosynthesis protein FliP [Brucella melitensis ATCC
           23457]
 gi|254695296|ref|ZP_05157124.1| flagellar biosynthesis protein FliP [Brucella abortus bv. 3 str.
           Tulya]
 gi|254702582|ref|ZP_05164410.1| flagellar biosynthesis protein FliP [Brucella suis bv. 3 str. 686]
 gi|254706286|ref|ZP_05168114.1| flagellar biosynthesis protein FliP [Brucella pinnipedialis
           M163/99/10]
 gi|254711420|ref|ZP_05173231.1| flagellar biosynthesis protein FliP [Brucella pinnipedialis B2/94]
 gi|254712020|ref|ZP_05173831.1| flagellar biosynthesis protein FliP [Brucella ceti M644/93/1]
 gi|254715089|ref|ZP_05176900.1| flagellar biosynthesis protein FliP [Brucella ceti M13/05/1]
 gi|256014948|ref|YP_003104957.1| flagellar biosynthesis protein [Brucella microti CCM 4915]
 gi|256111937|ref|ZP_05452888.1| flagellar biosynthesis protein FliP [Brucella melitensis bv. 3 str.
           Ether]
 gi|256262859|ref|ZP_05465391.1| flagellar transporter FliP [Brucella melitensis bv. 2 str. 63/9]
 gi|260568510|ref|ZP_05838979.1| flagellar transporter FliP [Brucella suis bv. 4 str. 40]
 gi|261215665|ref|ZP_05929946.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 3 str.
           Tulya]
 gi|261216798|ref|ZP_05931079.1| flagellar biosynthetic protein FliP [Brucella ceti M13/05/1]
 gi|261313730|ref|ZP_05952927.1| flagellar biosynthetic protein FliP [Brucella pinnipedialis
           M163/99/10]
 gi|261319028|ref|ZP_05958225.1| flagellar biosynthetic protein FliP [Brucella pinnipedialis B2/94]
 gi|261319665|ref|ZP_05958862.1| flagellar biosynthetic protein FliP [Brucella ceti M644/93/1]
 gi|261753162|ref|ZP_05996871.1| flagellar biosynthetic protein FliP [Brucella suis bv. 3 str. 686]
 gi|265993384|ref|ZP_06105941.1| flagellar biosynthetic protein FliP [Brucella melitensis bv. 3 str.
           Ether]
 gi|23463499|gb|AAN33367.1| flagellar biosynthetic protein FliP [Brucella suis 1330]
 gi|148369638|gb|ABQ62510.1| flagellar biosynthetic protein FliP [Brucella ovis ATCC 25840]
 gi|161337053|gb|ABX63357.1| flagellar biosynthetic protein FliP [Brucella canis ATCC 23365]
 gi|163675074|gb|ABY39184.1| flagellar biosynthetic protein FliP [Brucella suis ATCC 23445]
 gi|225616477|gb|EEH13525.1| flagellar biosynthetic protein FliP [Brucella ceti str. Cudo]
 gi|225642123|gb|ACO02036.1| flagellar biosynthetic protein FliP [Brucella melitensis ATCC
           23457]
 gi|255997608|gb|ACU49295.1| flagellar biosynthesis protein [Brucella microti CCM 4915]
 gi|260155175|gb|EEW90256.1| flagellar transporter FliP [Brucella suis bv. 4 str. 40]
 gi|260917272|gb|EEX84133.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 3 str.
           Tulya]
 gi|260921887|gb|EEX88455.1| flagellar biosynthetic protein FliP [Brucella ceti M13/05/1]
 gi|261292355|gb|EEX95851.1| flagellar biosynthetic protein FliP [Brucella ceti M644/93/1]
 gi|261298251|gb|EEY01748.1| flagellar biosynthetic protein FliP [Brucella pinnipedialis B2/94]
 gi|261302756|gb|EEY06253.1| flagellar biosynthetic protein FliP [Brucella pinnipedialis
           M163/99/10]
 gi|261742915|gb|EEY30841.1| flagellar biosynthetic protein FliP [Brucella suis bv. 3 str. 686]
 gi|262764254|gb|EEZ10286.1| flagellar biosynthetic protein FliP [Brucella melitensis bv. 3 str.
           Ether]
 gi|263092694|gb|EEZ16903.1| flagellar transporter FliP [Brucella melitensis bv. 2 str. 63/9]
 gi|326410341|gb|ADZ67405.1| flagellar biosynthesis protein FliP [Brucella melitensis M28]
 gi|326553633|gb|ADZ88272.1| flagellar biosynthesis protein FliP [Brucella melitensis M5-90]
          Length = 246

 Score =  260 bits (665), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 124/212 (58%), Positives = 167/212 (78%), Gaps = 3/212 (1%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           + S  IV+ FG+ T+LSIAP LLIMVT F RF I FS+LR+G+G+ + P ++V+ISLALF
Sbjct: 37  AASGQIVQLFGLLTVLSIAPGLLIMVTSFTRFAIAFSLLRSGLGLQTAPASMVMISLALF 96

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           MTFYVM+P  DR+   G+QPLM N+IT+  A   +++PF  FM    R+KDL LF D+A 
Sbjct: 97  MTFYVMAPAFDRAWNNGVQPLMRNEITQEAAFGEISQPFREFMMAQVRDKDLRLFEDLAD 156

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
            S R +D   +  +++R+L+P+FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMM
Sbjct: 157 PSFRTSD---DGIVDFRVLVPAFMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMM 213

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LPPT ISLPFK++FFVLIDGW++LV +L++SF
Sbjct: 214 LPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245


>gi|62317108|ref|YP_222961.1| flagellar biosynthesis protein FliP [Brucella abortus bv. 1 str.
           9-941]
 gi|83269100|ref|YP_418391.1| flagellar biosynthesis protein FliP [Brucella melitensis biovar
           Abortus 2308]
 gi|189022373|ref|YP_001932114.1| flagellar biosynthesis protein FliP [Brucella abortus S19]
 gi|237816670|ref|ZP_04595662.1| flagellar biosynthetic protein FliP [Brucella abortus str. 2308 A]
 gi|254691406|ref|ZP_05154660.1| flagellar biosynthesis protein FliP [Brucella abortus bv. 6 str.
           870]
 gi|254698391|ref|ZP_05160219.1| flagellar biosynthesis protein FliP [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254731838|ref|ZP_05190416.1| flagellar biosynthesis protein FliP [Brucella abortus bv. 4 str.
           292]
 gi|256256592|ref|ZP_05462128.1| flagellar biosynthesis protein FliP [Brucella abortus bv. 9 str.
           C68]
 gi|260544347|ref|ZP_05820168.1| flagellar transporter FliP [Brucella abortus NCTC 8038]
 gi|260757020|ref|ZP_05869368.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 6 str.
           870]
 gi|260759608|ref|ZP_05871956.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 4 str.
           292]
 gi|260762850|ref|ZP_05875182.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260882830|ref|ZP_05894444.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 9 str.
           C68]
 gi|297249948|ref|ZP_06933649.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 5 str.
           B3196]
 gi|62197301|gb|AAX75600.1| FliP, flagellar biosynthetic protein [Brucella abortus bv. 1 str.
           9-941]
 gi|82939374|emb|CAJ12324.1| Flagellar transport protein FliP:Type III secretion system inner
           membrane P protein [Brucella melitensis biovar Abortus
           2308]
 gi|189020947|gb|ACD73668.1| Flagellar transport protein FliP [Brucella abortus S19]
 gi|237787483|gb|EEP61699.1| flagellar biosynthetic protein FliP [Brucella abortus str. 2308 A]
 gi|260097618|gb|EEW81492.1| flagellar transporter FliP [Brucella abortus NCTC 8038]
 gi|260669926|gb|EEX56866.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 4 str.
           292]
 gi|260673271|gb|EEX60092.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260677128|gb|EEX63949.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 6 str.
           870]
 gi|260872358|gb|EEX79427.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 9 str.
           C68]
 gi|297173817|gb|EFH33181.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 5 str.
           B3196]
          Length = 246

 Score =  260 bits (665), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 124/212 (58%), Positives = 167/212 (78%), Gaps = 3/212 (1%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           + S  IV+ FG+ T+LSIAP LLIMVT F RF I FS+LR+G+G+ + P ++V+ISLALF
Sbjct: 37  AASGQIVQLFGLLTVLSIAPGLLIMVTSFTRFAIAFSLLRSGLGLQTAPASMVMISLALF 96

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           MTFYVM+P  DR+   G+QPLM N+IT+  A   +++PF  FM    R+KDL LF D+A 
Sbjct: 97  MTFYVMAPAFDRAWNNGVQPLMRNEITQEAAFGEISQPFREFMMAQVRDKDLCLFEDLAD 156

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
            S R +D   +  +++R+L+P+FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMM
Sbjct: 157 PSFRTSD---DGIVDFRVLVPAFMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMM 213

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LPPT ISLPFK++FFVLIDGW++LV +L++SF
Sbjct: 214 LPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245


>gi|254720604|ref|ZP_05182415.1| flagellar biosynthesis protein FliP [Brucella sp. 83/13]
 gi|265985644|ref|ZP_06098379.1| flagellar biosynthetic protein FliP [Brucella sp. 83/13]
 gi|306838566|ref|ZP_07471403.1| flagellar biosynthetic protein FliP [Brucella sp. NF 2653]
 gi|264664236|gb|EEZ34497.1| flagellar biosynthetic protein FliP [Brucella sp. 83/13]
 gi|306406352|gb|EFM62594.1| flagellar biosynthetic protein FliP [Brucella sp. NF 2653]
          Length = 246

 Score =  260 bits (664), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 124/212 (58%), Positives = 166/212 (78%), Gaps = 3/212 (1%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           + S  IV+ FG+ T+LSIAP LLIMVT F RF I FS+LR+G+G+ + P ++V+ISLALF
Sbjct: 37  AASGQIVQLFGLLTVLSIAPGLLIMVTSFTRFAIAFSLLRSGLGLQTAPASMVMISLALF 96

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           MTFYVM+P  DR+   G+QPLM N+IT+  A   +++PF  FM    R+KDL LF D+A 
Sbjct: 97  MTFYVMAPAFDRAWNNGVQPLMRNEITQEAAFGEISQPFREFMMAQVRDKDLRLFEDLAD 156

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
            S R  D   +  +++R+L+P+FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMM
Sbjct: 157 PSFRTGD---DGIVDFRVLVPAFMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMM 213

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LPPT ISLPFK++FFVLIDGW++LV +L++SF
Sbjct: 214 LPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245


>gi|306846272|ref|ZP_07478833.1| flagellar biosynthetic protein FliP [Brucella sp. BO1]
 gi|306273267|gb|EFM55136.1| flagellar biosynthetic protein FliP [Brucella sp. BO1]
          Length = 246

 Score =  259 bits (663), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 124/212 (58%), Positives = 166/212 (78%), Gaps = 3/212 (1%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           + S  IV+ FG+ T+LSIAP LLIMVT F RF I FS+LR+G+G+ + P ++V+ISLALF
Sbjct: 37  AASGQIVQLFGLLTVLSIAPGLLIMVTSFTRFAIAFSLLRSGLGLQTAPASMVMISLALF 96

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           MTFYVM+P  DR+ + G+QPLM N+IT+  A   +++PF  FM    R KDL LF D+A 
Sbjct: 97  MTFYVMAPAFDRAWDNGVQPLMRNEITQEAAFGEISQPFREFMMAQVRGKDLRLFEDLAD 156

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
            S R  D   +  +++R+L+P+FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMM
Sbjct: 157 PSFRTGD---DGIVDFRVLVPAFMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMM 213

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LPPT ISLPFK++FFVLIDGW++LV +L++SF
Sbjct: 214 LPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245


>gi|239834436|ref|ZP_04682764.1| flagellar biosynthetic protein FliP [Ochrobactrum intermedium LMG
           3301]
 gi|239822499|gb|EEQ94068.1| flagellar biosynthetic protein FliP [Ochrobactrum intermedium LMG
           3301]
          Length = 246

 Score =  259 bits (663), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 123/212 (58%), Positives = 166/212 (78%), Gaps = 3/212 (1%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           + S  IV+ FG+ T+LSIAP +LIMVT F RF I FS+LR+G+G+ + P ++V+ISLALF
Sbjct: 37  AASGQIVQLFGLLTVLSIAPGILIMVTSFTRFAIAFSLLRSGLGLQTAPASMVMISLALF 96

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           MTFYVM+P  DR+   G+QPLM N+IT+  A   +++PF  FM    R+KDL LF D+A 
Sbjct: 97  MTFYVMAPAFDRAWNNGVQPLMRNEITQQAAFTEISQPFREFMLGQVRDKDLRLFEDLAD 156

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
            S R  D   +  +++R+L+P+FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMM
Sbjct: 157 PSFRTGD---DGIVDFRVLVPAFMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMM 213

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LPPT ISLPFK++FFVLIDGW++LV +L++SF
Sbjct: 214 LPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245


>gi|153011518|ref|YP_001372732.1| flagellar biosynthesis protein FliP [Ochrobactrum anthropi ATCC
           49188]
 gi|151563406|gb|ABS16903.1| flagellar biosynthetic protein FliP [Ochrobactrum anthropi ATCC
           49188]
          Length = 246

 Score =  259 bits (663), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 124/212 (58%), Positives = 166/212 (78%), Gaps = 3/212 (1%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           + S  IV+ FG+ T+LSIAP LLIMVT F RF I FS+LR+G+G+ + P ++V+ISLALF
Sbjct: 37  AASGQIVQLFGLLTVLSIAPGLLIMVTSFTRFAIAFSLLRSGLGLQTAPASMVMISLALF 96

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           MTFYVM+P  DR+   G+QPLM N+IT+  A   +++PF  FM    R+KDL LF D+A 
Sbjct: 97  MTFYVMAPAFDRAWNNGVQPLMRNEITQEAAFGEISQPFREFMMGQVRDKDLRLFEDLAD 156

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
            S R  D   +  +++R+L+P+FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMM
Sbjct: 157 PSFRTGD---DGIVDFRVLVPAFMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMM 213

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LPPT ISLPFK++FFVLIDGW++LV +L++SF
Sbjct: 214 LPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245


>gi|256029950|ref|ZP_05443564.1| flagellar biosynthesis protein FliP [Brucella pinnipedialis
           M292/94/1]
 gi|265986969|ref|ZP_06099526.1| flagellar biosynthetic protein FliP [Brucella pinnipedialis
           M292/94/1]
 gi|264659166|gb|EEZ29427.1| flagellar biosynthetic protein FliP [Brucella pinnipedialis
           M292/94/1]
          Length = 246

 Score =  259 bits (663), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 124/212 (58%), Positives = 167/212 (78%), Gaps = 3/212 (1%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           + S  IV+ FG+ T+LSIAP LLIMVT F RF I FS+LR+G+G+ + P ++V+ISLALF
Sbjct: 37  AASGQIVQLFGLLTVLSIAPGLLIMVTSFTRFAIAFSLLRSGLGLQTAPASMVMISLALF 96

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           MTFYVM+P  DR+   G+QPLM N+IT+  A   +++PF  FM    R+KDL LF D+A 
Sbjct: 97  MTFYVMAPAFDRAWNNGVQPLMPNEITQEAAFGEISQPFREFMMAQVRDKDLRLFEDLAD 156

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
            S R +D   +  +++R+L+P+FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMM
Sbjct: 157 PSFRTSD---DGIVDFRVLVPAFMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMM 213

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LPPT ISLPFK++FFVLIDGW++LV +L++SF
Sbjct: 214 LPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245


>gi|254502570|ref|ZP_05114721.1| flagellar biosynthetic protein FliP [Labrenzia alexandrii DFL-11]
 gi|222438641|gb|EEE45320.1| flagellar biosynthetic protein FliP [Labrenzia alexandrii DFL-11]
          Length = 246

 Score =  259 bits (662), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 128/215 (59%), Positives = 164/215 (76%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
            + S S  +++   + T+LS+AP +LIMVT F RF+I FS LR+G+G+ + P NL++ISL
Sbjct: 31  GEGSASGRVIQMIILLTVLSLAPGILIMVTSFIRFVIAFSFLRSGIGLQTTPGNLILISL 90

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           ALFMTFYVM+PT DR+ E G++PLMNN+ITE  A  ++ EPF  FM +  REKDL LF D
Sbjct: 91  ALFMTFYVMAPTFDRAWEDGVRPLMNNEITEEEAYVKITEPFREFMLSQVREKDLVLFDD 150

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           +A     +      + +E R+LIP+FMISELRR FEIGFLI LPFL+IDMIVATI M+MG
Sbjct: 151 LAAGRVTDGSADSAEEVELRVLIPAFMISELRRGFEIGFLIALPFLVIDMIVATITMSMG 210

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMMLPPT ISLPFK +FF+LIDGW+LLV +LV+SF
Sbjct: 211 MMMLPPTVISLPFKALFFILIDGWNLLVGSLVRSF 245


>gi|294853182|ref|ZP_06793854.1| flagellar biosynthetic protein FliP [Brucella sp. NVSL 07-0026]
 gi|294818837|gb|EFG35837.1| flagellar biosynthetic protein FliP [Brucella sp. NVSL 07-0026]
          Length = 246

 Score =  258 bits (659), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 123/212 (58%), Positives = 166/212 (78%), Gaps = 3/212 (1%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           + S  IV+ FG+ T+LSIAP LLIMVT F RF I FS+LR+G+G+ + P ++V+ISLALF
Sbjct: 37  AASGQIVQLFGLLTVLSIAPGLLIMVTSFTRFAIAFSLLRSGLGLQTAPASMVMISLALF 96

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           MTFYVM+P  DR+   G+QPLM N+IT+  A   +++PF  FM    R+KDL LF D+  
Sbjct: 97  MTFYVMAPAFDRAWNNGVQPLMRNEITQEAAFGEISQPFREFMMAQVRDKDLRLFEDLVD 156

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
            S R +D   +  +++R+L+P+FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMM
Sbjct: 157 PSFRTSD---DGIVDFRVLVPAFMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMM 213

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LPPT ISLPFK++FFVLIDGW++LV +L++SF
Sbjct: 214 LPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245


>gi|17989425|ref|NP_542058.1| flagellar biosynthesis protein FliP [Brucella melitensis bv. 1 str.
           16M]
 gi|256043079|ref|ZP_05446023.1| flagellar biosynthesis protein FliP [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260564309|ref|ZP_05834794.1| flagellar transporter FliP [Brucella melitensis bv. 1 str. 16M]
 gi|265989517|ref|ZP_06102074.1| flagellar biosynthetic protein FliP [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|17985302|gb|AAL54322.1| flagellar biosynthetic protein flip [Brucella melitensis bv. 1 str.
           16M]
 gi|260151952|gb|EEW87045.1| flagellar transporter FliP [Brucella melitensis bv. 1 str. 16M]
 gi|263000186|gb|EEZ12876.1| flagellar biosynthetic protein FliP [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 246

 Score =  258 bits (659), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 123/212 (58%), Positives = 166/212 (78%), Gaps = 3/212 (1%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           + S  IV+ FG+ T+LSIAP LLIMVT F RF I FS+LR+G+G+ + P ++V+ISLALF
Sbjct: 37  AASGQIVQLFGLLTVLSIAPGLLIMVTSFTRFAIAFSLLRSGLGLQTAPASMVMISLALF 96

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           MTFYVM+P  DR+   G+QPLM N+I +  A   +++PF  FM    R+KDL LF D+A 
Sbjct: 97  MTFYVMAPAFDRAWNNGVQPLMRNEIMQEAAFGEISQPFREFMMAQVRDKDLRLFEDLAD 156

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
            S R +D   +  +++R+L+P+FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMM
Sbjct: 157 PSFRTSD---DGIVDFRVLVPAFMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMM 213

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LPPT ISLPFK++FFVLIDGW++LV +L++SF
Sbjct: 214 LPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245


>gi|90418387|ref|ZP_01226299.1| flagellar biosynthetic protein fliP [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90338059|gb|EAS51710.1| flagellar biosynthetic protein fliP [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 257

 Score =  257 bits (657), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 134/233 (57%), Positives = 173/233 (74%), Gaps = 8/233 (3%)

Query: 21  SSLHDVMNI-PA-DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           S L D+  + PA D + S  IV+ FGI TILSIAP LL+MVT F R +I  SILRTG+G+
Sbjct: 24  SGLPDLAALLPAGDSTASGRIVQLFGIVTILSIAPGLLVMVTSFTRIVIALSILRTGLGL 83

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
            + P NL++ISL+LFMTF+VM+PT DR+   G+QPL+NN+ITE  A  R++EPF  FM  
Sbjct: 84  QTTPANLILISLSLFMTFFVMAPTFDRAWNDGLQPLLNNEITEEEAFYRISEPFKDFMLT 143

Query: 139 NTREKDLSLFMDMAHSSHR------NTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192
             R +DL+LF D+A ++ R               ++ R LIP+FMISELRR FEIGFLI+
Sbjct: 144 QVRPEDLTLFGDIAAATSRERVEPEEQGAADERDVDLRELIPAFMISELRRGFEIGFLIV 203

Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LPFL+IDMIVAT+ M+MGMMMLPPT ISLPFK++FF+LIDGW++LV +LV+SF
Sbjct: 204 LPFLVIDMIVATLTMSMGMMMLPPTIISLPFKILFFILIDGWNMLVGSLVRSF 256


>gi|328545499|ref|YP_004305608.1| flagellar transport protein FliP [polymorphum gilvum SL003B-26A1]
 gi|326415240|gb|ADZ72303.1| Flagellar transport protein FliP [Polymorphum gilvum SL003B-26A1]
          Length = 246

 Score =  254 bits (650), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 127/215 (59%), Positives = 159/215 (73%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
            + S S  IV+   + T+LS+AP +LIMVT F RF +  S LR+G+G+ + P NL++ISL
Sbjct: 31  GEGSASGRIVQIIALLTVLSVAPGILIMVTSFTRFAVALSFLRSGIGLQTTPGNLILISL 90

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           ALFMTFYVM+PT DR+   G+ PLMNN+I E  A  R+ EPF  FM +  RE+DL LF D
Sbjct: 91  ALFMTFYVMAPTFDRAWTQGVVPLMNNEIDEQEAYGRITEPFREFMLSQVREQDLVLFDD 150

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           +A     +T       +E R+LIP+FMISELRR FEIGFLI LPFL+IDMIVATI M+MG
Sbjct: 151 LAAGRLTDTPAASPREVELRVLIPAFMISELRRGFEIGFLIALPFLVIDMIVATITMSMG 210

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMMLPPT ISLPFK +FF+LIDGW+LLV +LV+SF
Sbjct: 211 MMMLPPTVISLPFKALFFILIDGWNLLVGSLVRSF 245


>gi|306841043|ref|ZP_07473767.1| flagellar biosynthetic protein FliP [Brucella sp. BO2]
 gi|306288932|gb|EFM60232.1| flagellar biosynthetic protein FliP [Brucella sp. BO2]
          Length = 204

 Score =  254 bits (650), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 121/205 (59%), Positives = 163/205 (79%), Gaps = 3/205 (1%)

Query: 41  RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100
           + FG+ T+LSIAP LLIMVT F RF I FS+LR+G+G+ + P ++V+ISLALFMTFYVM+
Sbjct: 2   QLFGLLTVLSIAPGLLIMVTSFTRFAIAFSLLRSGLGLQTAPASMVMISLALFMTFYVMA 61

Query: 101 PTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD 160
           P  DR+   G+QPLM N+IT+  A   +++PF  FM    R+KDL LF D+A  S R +D
Sbjct: 62  PAFDRAWNNGVQPLMRNEITQEAAFGEISQPFREFMMAQVRDKDLRLFEDLADPSFRTSD 121

Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
              +  +++R+L+P+FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT IS
Sbjct: 122 ---DGIVDFRVLVPAFMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVIS 178

Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245
           LPFK++FFVLIDGW++LV +L++SF
Sbjct: 179 LPFKILFFVLIDGWNILVGSLIRSF 203


>gi|170741215|ref|YP_001769870.1| flagellar biosynthesis protein FliP [Methylobacterium sp. 4-46]
 gi|168195489|gb|ACA17436.1| flagellar biosynthetic protein FliP [Methylobacterium sp. 4-46]
          Length = 262

 Score =  254 bits (648), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 123/221 (55%), Positives = 166/221 (75%), Gaps = 2/221 (0%)

Query: 25  DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
           D +  P + + S  I++   + T+LS+AP LL+MVT F RF++  S LR+G+G+ S P N
Sbjct: 43  DALLPPGNGAASGRIIQMVALLTVLSVAPGLLVMVTSFTRFVVALSFLRSGLGLQSTPAN 102

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
           L ++SL+LFMTFYVM+PT DR+ + G++PL  N+I+E  A  +V +PF  FM+++ REKD
Sbjct: 103 LFMVSLSLFMTFYVMAPTFDRAWQEGVRPLTENRISEEDAFGKVVDPFREFMQSHVREKD 162

Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
           L  F D+A  +    +    + ++ RILIP+FMISELRR FEIGFLI LPFL+IDMIVAT
Sbjct: 163 LQTFADLASRNFPKAE--AGEKVDLRILIPAFMISELRRGFEIGFLIALPFLVIDMIVAT 220

Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +VM+MGMMMLPPT ISLPFKV+FFVLIDGW+LLV  LV+S+
Sbjct: 221 VVMSMGMMMLPPTVISLPFKVLFFVLIDGWNLLVSGLVRSY 261


>gi|163850069|ref|YP_001638112.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens
           PA1]
 gi|163661674|gb|ABY29041.1| flagellar biosynthetic protein FliP [Methylobacterium extorquens
           PA1]
          Length = 260

 Score =  251 bits (642), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 123/221 (55%), Positives = 163/221 (73%), Gaps = 2/221 (0%)

Query: 25  DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
           D +  P + + S  I++   + T+LS+AP LL+MVT F RF + FS LR+G+G+ S P N
Sbjct: 41  DALLPPGNGAASGRIIQLVALLTVLSLAPGLLVMVTSFTRFAVAFSFLRSGLGLQSTPAN 100

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
           L ++SLALFMTFYVM+PT DR+   G++PL  N+I+E  A  ++ +PF  FM  + R KD
Sbjct: 101 LFLVSLALFMTFYVMAPTFDRAWNEGVKPLQENRISEEEAFGKIVDPFREFMTQHVRPKD 160

Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
           L  F D+A  +    +    + I+ RILIP+FMISELRR FEIGFLI+LPFL+ID+IV+T
Sbjct: 161 LQTFTDLASRTFPKAE--AGEKIDLRILIPAFMISELRRGFEIGFLIVLPFLVIDIIVST 218

Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IVM+MGMMMLPPT ISLPFKV+FF+LIDGW+LLV  LV+SF
Sbjct: 219 IVMSMGMMMLPPTVISLPFKVLFFILIDGWNLLVSGLVRSF 259


>gi|240137203|ref|YP_002961672.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens
           AM1]
 gi|240007169|gb|ACS38395.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens
           AM1]
          Length = 260

 Score =  251 bits (641), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 123/221 (55%), Positives = 163/221 (73%), Gaps = 2/221 (0%)

Query: 25  DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
           D +  P + + S  I++   + T+LS+AP LL+MVT F RF + FS LR+G+G+ S P N
Sbjct: 41  DALLPPGNGAASGRIIQLVALLTVLSLAPGLLVMVTSFTRFAVAFSFLRSGLGLQSTPAN 100

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
           L ++SLALFMTFYVM+PT DR+   G++PL  N+I+E  A  ++ +PF  FM  + R KD
Sbjct: 101 LFLVSLALFMTFYVMAPTFDRAWNEGVKPLQENRISEEEAFGKIVDPFREFMTQHVRPKD 160

Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
           L  F D+A  +    +    + I+ RILIP+FMISELRR FEIGFLI+LPFL+ID+IV+T
Sbjct: 161 LQTFTDLASRTFPKAE--AGEKIDLRILIPAFMISELRRGFEIGFLIVLPFLVIDIIVST 218

Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IVM+MGMMMLPPT ISLPFKV+FF+LIDGW+LLV  LV+SF
Sbjct: 219 IVMSMGMMMLPPTVISLPFKVLFFILIDGWNLLVSGLVRSF 259


>gi|218528672|ref|YP_002419488.1| flagellar biosynthesis protein FliP [Methylobacterium
           chloromethanicum CM4]
 gi|218520975|gb|ACK81560.1| flagellar biosynthetic protein FliP [Methylobacterium
           chloromethanicum CM4]
          Length = 260

 Score =  251 bits (641), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 123/221 (55%), Positives = 163/221 (73%), Gaps = 2/221 (0%)

Query: 25  DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
           D +  P + + S  I++   + T+LS+AP LL+MVT F RF + FS LR+G+G+ S P N
Sbjct: 41  DALLPPGNGAASGRIIQLVALLTVLSLAPGLLVMVTSFTRFAVAFSFLRSGLGLQSTPAN 100

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
           L ++SLALFMTFYVM+PT DR+   G++PL  N+I+E  A  ++ +PF  FM  + R KD
Sbjct: 101 LFLVSLALFMTFYVMAPTFDRAWNEGVKPLQENRISEEEAFGKIVDPFREFMTQHVRPKD 160

Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
           L  F D+A  +    +    + I+ RILIP+FMISELRR FEIGFLI+LPFL+ID+IV+T
Sbjct: 161 LQTFTDLASRTFPKAE--AGEKIDLRILIPAFMISELRRGFEIGFLIVLPFLVIDIIVST 218

Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IVM+MGMMMLPPT ISLPFKV+FF+LIDGW+LLV  LV+SF
Sbjct: 219 IVMSMGMMMLPPTVISLPFKVLFFILIDGWNLLVSGLVRSF 259


>gi|188579873|ref|YP_001923318.1| flagellar biosynthesis protein FliP [Methylobacterium populi BJ001]
 gi|179343371|gb|ACB78783.1| flagellar biosynthetic protein FliP [Methylobacterium populi BJ001]
          Length = 253

 Score =  250 bits (639), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 123/221 (55%), Positives = 162/221 (73%), Gaps = 2/221 (0%)

Query: 25  DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
           D +  P + + S  I++   + T+LS+AP LL+M+T F RF + FS LR+G+G+ S P N
Sbjct: 34  DALLPPGNGAASGRIIQLVALLTVLSLAPGLLVMMTSFTRFAVAFSFLRSGLGLQSTPAN 93

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
           L ++SLALFMTFYVM+PT DR+   G++PL  N+I E  A  ++ EPF  FM  + R KD
Sbjct: 94  LFLVSLALFMTFYVMAPTFDRAWNEGVKPLQENRIGEEEAFGKIVEPFREFMTQHVRPKD 153

Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
           L  F D+A  +    +    + I+ RILIP+FMISELRR FEIGFLI+LPFL+ID+IV+T
Sbjct: 154 LQTFTDLASRNFPKAE--AGEKIDLRILIPAFMISELRRGFEIGFLIVLPFLVIDIIVST 211

Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IVM+MGMMMLPPT ISLPFKV+FF+LIDGW+LLV  LV+SF
Sbjct: 212 IVMSMGMMMLPPTVISLPFKVLFFILIDGWNLLVSGLVRSF 252


>gi|254559215|ref|YP_003066310.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens
           DM4]
 gi|254266493|emb|CAX22257.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens
           DM4]
          Length = 260

 Score =  249 bits (636), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 122/221 (55%), Positives = 162/221 (73%), Gaps = 2/221 (0%)

Query: 25  DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
           D +  P + + S  I++   + T+LS+AP LL+MVT F RF +  S LR+G+G+ S P N
Sbjct: 41  DALLPPGNGAASGRIIQLVALLTVLSLAPGLLVMVTSFTRFAVALSFLRSGLGLQSTPAN 100

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
           L ++SLALFMTFYVM+PT DR+   G++PL  N+I+E  A  ++ +PF  FM  + R KD
Sbjct: 101 LFLVSLALFMTFYVMAPTFDRAWNEGVKPLQENRISEEEAFGKIVDPFREFMTQHVRPKD 160

Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
           L  F D+A  +    +    + I+ RILIP+FMISELRR FEIGFLI+LPFL+ID+IV+T
Sbjct: 161 LQTFTDLASRTFPKAE--AGEKIDLRILIPAFMISELRRGFEIGFLIVLPFLVIDIIVST 218

Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IVM+MGMMMLPPT ISLPFKV+FF+LIDGW+LLV  LV+SF
Sbjct: 219 IVMSMGMMMLPPTVISLPFKVLFFILIDGWNLLVSGLVRSF 259


>gi|170748101|ref|YP_001754361.1| flagellar biosynthetic protein FliP [Methylobacterium radiotolerans
           JCM 2831]
 gi|170654623|gb|ACB23678.1| flagellar biosynthetic protein FliP [Methylobacterium radiotolerans
           JCM 2831]
          Length = 245

 Score =  248 bits (633), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 133/248 (53%), Positives = 173/248 (69%), Gaps = 7/248 (2%)

Query: 1   MIRYCFFA--LFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIM 58
           M+R  F A  L LV         SL  V+  P + S+S  +++   + T+LSIAP LL+M
Sbjct: 1   MLRRVFLASPLLLVATAATAQSFSLDQVLP-PGNGSVSGRMIQLIALMTVLSIAPGLLVM 59

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           VT F RF++  S LR+G+G+ S P NLV+ISL+LFMTFYVM PT DR+ + G++PL  N+
Sbjct: 60  VTSFTRFVVALSFLRSGLGLQSAPANLVLISLSLFMTFYVMGPTFDRAWQDGVRPLTENR 119

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSS-HRNTDITKNDHIEYRILIPSFM 177
           ITE  A  +V  PF  FM  + R KDL  F ++A S+  +  D  + D    RILIP+FM
Sbjct: 120 ITEEEAFAKVTAPFRDFMLAHVRPKDLDTFAEIAASNLSKAPDGGRTD---LRILIPAFM 176

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
           ISELRR FEIGFLI LPFL+IDM++A +VM+MGMMMLPPT ISLPFK++FFVLIDGW++L
Sbjct: 177 ISELRRGFEIGFLIALPFLVIDMVIAVLVMSMGMMMLPPTVISLPFKILFFVLIDGWNML 236

Query: 238 VENLVKSF 245
           V  LVKS+
Sbjct: 237 VSGLVKSY 244


>gi|254473298|ref|ZP_05086695.1| flagellar biosynthetic protein FliP [Pseudovibrio sp. JE062]
 gi|211957414|gb|EEA92617.1| flagellar biosynthetic protein FliP [Pseudovibrio sp. JE062]
          Length = 251

 Score =  248 bits (632), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 131/242 (54%), Positives = 173/242 (71%), Gaps = 4/242 (1%)

Query: 5   CFFALFLVTPELVFAKSSLHDVMNIPA-DLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
             FALF V P     + +L D++  PA   S S  I++   I T+LS+AP +LIMVT F 
Sbjct: 12  SLFALFWVAPASA-QEINLSDLL--PAGQASASGRIIQYVMILTVLSLAPGILIMVTSFT 68

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
           RF++  S LR+G+G+ + P N+++ISLALFMTFYVM+PT D + + G+QPL+  +I+E  
Sbjct: 69  RFVVALSFLRSGIGLQTTPANIILISLALFMTFYVMAPTFDAAWKNGLQPLIKEEISEEV 128

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
           A + + +PF  FM +N REKDL LF D+A S+         + ++ R+LIP+FMISELRR
Sbjct: 129 AYEEMTKPFRRFMLDNVREKDLVLFDDLAVSAFNYEKDAPVEELDLRVLIPAFMISELRR 188

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
            FEIGFLI LPF++IDMIVATI M+MGMMMLPPT ISLPFKV+FFVLIDGW LL   L++
Sbjct: 189 GFEIGFLIALPFVVIDMIVATITMSMGMMMLPPTVISLPFKVLFFVLIDGWYLLTGGLIR 248

Query: 244 SF 245
           SF
Sbjct: 249 SF 250


>gi|182680542|ref|YP_001834688.1| flagellar biosynthetic protein FliP [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182636425|gb|ACB97199.1| flagellar biosynthetic protein FliP [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 246

 Score =  248 bits (632), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 119/216 (55%), Positives = 164/216 (75%), Gaps = 1/216 (0%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P + ++S  I++   + TILS+AP LL+MVT F RF I  S LR+G+G+ S P NLV+IS
Sbjct: 31  PGNGTVSGRIIQLVALLTILSVAPGLLVMVTSFTRFAIALSFLRSGLGLQSTPANLVLIS 90

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           L+LFMTFYVMSP  +++ + G++P+M+NQ+TE  A  ++ +PF  FM    R KDL LF 
Sbjct: 91  LSLFMTFYVMSPVFEKAWDGGVKPMMDNQLTEQEAFPKIIQPFREFMSGQVRGKDLKLFT 150

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
           D+A  +  + D T ++ IE RILIP+FMISELRR FE+GFLI+LPFL+IDMI + I M+M
Sbjct: 151 DLAKENFPSVDQTGSE-IELRILIPAFMISELRRGFEMGFLIVLPFLVIDMITSAITMSM 209

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMMLPPT I+LP KV+FF+LIDGW++L+ +LV+S+
Sbjct: 210 GMMMLPPTVIALPVKVLFFILIDGWNMLIGSLVRSY 245


>gi|296445179|ref|ZP_06887139.1| flagellar biosynthetic protein FliP [Methylosinus trichosporium
           OB3b]
 gi|296257353|gb|EFH04420.1| flagellar biosynthetic protein FliP [Methylosinus trichosporium
           OB3b]
          Length = 243

 Score =  243 bits (620), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 119/212 (56%), Positives = 159/212 (75%), Gaps = 3/212 (1%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           + S  IV+   + T+LSIAP LLIMVT F RF I  S LR+G+G+ S P NLV+ISLALF
Sbjct: 34  AASGKIVQLLAVLTVLSIAPGLLIMVTSFTRFAIALSFLRSGLGLQSTPANLVLISLALF 93

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           MTFYVM+PT + + + G++PLM+ +ITE  A +++++PF  FM  N REKD+ LF  ++ 
Sbjct: 94  MTFYVMAPTFEAAWQDGLKPLMDQKITEVEAFEKISQPFRKFMIANVREKDIKLFDSLSR 153

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
                 D    D +  ++L P+FMISELRR FEIGFLI+LPFL+IDMIVA + M+MGMMM
Sbjct: 154 EPRPAGDY---DKLGLQVLAPAFMISELRRGFEIGFLIVLPFLVIDMIVAVVTMSMGMMM 210

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LPPT+ISLP KV+FF+LIDGW+LLV +L++S+
Sbjct: 211 LPPTAISLPVKVLFFILIDGWNLLVGSLIRSY 242


>gi|217976231|ref|YP_002360378.1| flagellar biosynthetic protein FliP [Methylocella silvestris BL2]
 gi|217501607|gb|ACK49016.1| flagellar biosynthetic protein FliP [Methylocella silvestris BL2]
          Length = 247

 Score =  241 bits (614), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 113/216 (52%), Positives = 161/216 (74%), Gaps = 3/216 (1%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P   + ++ I++   + T+LSIAP +L+M T F RF++  S LR+G+G+ S P NL++IS
Sbjct: 34  PGGGAAASRIIQLVVLLTVLSIAPGILVMTTSFTRFVVALSFLRSGIGLQSTPANLILIS 93

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           L+LFMTFYVM+PT +R+ + G++PLM+N++TE  A  ++ EPF  FM +  REKDL LF 
Sbjct: 94  LSLFMTFYVMAPTFERAWDAGVKPLMDNKLTEEQAFGKIVEPFRDFMMSQVREKDLKLFE 153

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
           D+A    +    +     E R LIP+FMISELRR FEIGFLI LPFL+IDMIV+T+ M+M
Sbjct: 154 DLAGEKFKTKSQSTG---EIRTLIPAFMISELRRGFEIGFLIALPFLVIDMIVSTLTMSM 210

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMMLPP+ I+LP K++FF+LIDGW+LL+ +L++S+
Sbjct: 211 GMMMLPPSVIALPIKILFFILIDGWNLLIGSLIRSY 246


>gi|304392500|ref|ZP_07374440.1| flagellar biosynthetic protein FliP [Ahrensia sp. R2A130]
 gi|303295130|gb|EFL89490.1| flagellar biosynthetic protein FliP [Ahrensia sp. R2A130]
          Length = 259

 Score =  240 bits (612), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 127/260 (48%), Positives = 171/260 (65%), Gaps = 17/260 (6%)

Query: 1   MIRYCFFALFLVTPELVFAKSS----------LHDVMNIPADLSISTWIVRTFGIFTILS 50
           MI     AL L  P   +A++S          L          S+S  I++ FG+ T+LS
Sbjct: 1   MIAGLLLALVLTGP--AYAQTSPDVLGDLSRLLGSGTEATGSPSVSGQIIQLFGLVTVLS 58

Query: 51  IAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMG 110
           +AP +LI+VT F RFII FSILR G+G+ S P NL++ISL+LFMTF+VMS T   + + G
Sbjct: 59  LAPGILIVVTSFTRFIIAFSILRMGLGLQSTPANLILISLSLFMTFHVMSATFQTAWDKG 118

Query: 111 IQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT-----KND 165
             PL   +ITE  A+ ++ EPF  FM  N R +D++LF D+ +       +        D
Sbjct: 119 AGPLSRGEITEAQAVTQIIEPFRTFMLANVRGEDIALFTDLQNERAVADGVAVPETAAAD 178

Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225
            +    L+P+FMISE+RR FEIGFLI+LPFL+ID+IVATIVMAMGMMMLPPT ++LPFK+
Sbjct: 179 EVAITALVPAFMISEIRRGFEIGFLILLPFLVIDLIVATIVMAMGMMMLPPTVVALPFKI 238

Query: 226 IFFVLIDGWSLLVENLVKSF 245
           +FFVLIDGW+LLV +L++SF
Sbjct: 239 LFFVLIDGWNLLVGSLLRSF 258


>gi|27381978|ref|NP_773507.1| flagellar biosynthesis protein FliP [Bradyrhizobium japonicum USDA
           110]
 gi|27355148|dbj|BAC52132.1| flagellar biosynthetic protein [Bradyrhizobium japonicum USDA 110]
          Length = 246

 Score =  238 bits (608), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 126/232 (54%), Positives = 170/232 (73%), Gaps = 2/232 (0%)

Query: 14  PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73
           PE+ FA+    + +  P + S S  I++   + T+LS+AP LLIMVT F RF +  S LR
Sbjct: 16  PEMAFAQIPDLNSLLPPGNGSTSGRIIQLMALITVLSVAPGLLIMVTSFTRFAVALSFLR 75

Query: 74  TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133
           +G+G+ + P NLV++SLALFMTFYVM+PT DR+ E G+QPLM N+I+E  A  ++ +PF 
Sbjct: 76  SGLGLQTTPANLVLVSLALFMTFYVMAPTFDRAWETGVQPLMKNEISEEEAYLKITDPFR 135

Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
            FM  + R+KDL  F  +A  S R      +  I+ R++IP+FMISELRRSFEIGFLI+L
Sbjct: 136 EFMLAHVRDKDLQTFEALAAESFRKK--FDDKRIDLRVIIPAFMISELRRSFEIGFLIML 193

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           PFL+IDMIVAT+ M+MGMMM+PPT ++LPFK++FFVLIDGW+LL   LV+SF
Sbjct: 194 PFLVIDMIVATLTMSMGMMMMPPTILALPFKMLFFVLIDGWNLLASGLVRSF 245


>gi|114765260|ref|ZP_01444392.1| flagellar biosynthesis protein P [Pelagibaca bermudensis HTCC2601]
 gi|114542395|gb|EAU45423.1| flagellar biosynthesis protein P [Roseovarius sp. HTCC2601]
          Length = 282

 Score =  238 bits (608), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 117/220 (53%), Positives = 162/220 (73%), Gaps = 7/220 (3%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           ++S  I++     T+LS+AP LL+++T F RF+IVFS+LR+ +G+   PPN+V+ S+ALF
Sbjct: 57  TLSGRIIQLIAAMTVLSLAPGLLVIMTSFTRFVIVFSMLRSALGLNQSPPNMVLTSMALF 116

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           MTF+VM P  + + E G+QPLM N ITE  A+ RV EPF +FM  NTREKDL+LF D+A 
Sbjct: 117 MTFFVMQPVFEDAWEGGVQPLMANSITEEQALMRVGEPFKLFMYANTREKDLALFRDIAA 176

Query: 154 SSHRNTDITKN-------DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
            S       ++       + + +R L+P+FMISELRR+F IGFLI LPFL+ID+IVA+++
Sbjct: 177 RSEGTVPPEESAPAPQSAEDVGWRELVPAFMISELRRAFSIGFLIYLPFLVIDLIVASVL 236

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           M+ GMMMLPP  ISLPFKVIFFVLIDGW +L  +L++S++
Sbjct: 237 MSAGMMMLPPVLISLPFKVIFFVLIDGWYMLAGSLMESYL 276


>gi|148256782|ref|YP_001241367.1| flagellar biosynthesis protein FliP [Bradyrhizobium sp. BTAi1]
 gi|146408955|gb|ABQ37461.1| Flagellar transport protein FliP [Bradyrhizobium sp. BTAi1]
          Length = 234

 Score =  238 bits (607), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 113/216 (52%), Positives = 159/216 (73%), Gaps = 4/216 (1%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P +  ++   V+   + T+LSIAP +LIM+T F R ++V S+LRT MG  + PPN VII+
Sbjct: 21  PGNGGVTERAVQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLRTAMGTATAPPNAVIIA 80

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           LA+F+T +VM P L +S + G++PL+ NQI    A+QR + P   FM+ N REKDL LFM
Sbjct: 81  LAMFLTAFVMGPVLQKSYDDGVRPLIENQIGVEDALQRASVPLRGFMQKNVREKDLKLFM 140

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
           D++  +   T     D +  RIL+P+FMISEL+R+FEIGFL+ LPFLIID++VA+++M+M
Sbjct: 141 DLSGEAPPATP----DELSLRILVPAFMISELKRAFEIGFLLFLPFLIIDLVVASVLMSM 196

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMMLPP  +SLPFK+IFFVL+DGWSL+  +LV+S+
Sbjct: 197 GMMMLPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY 232


>gi|27380927|ref|NP_772456.1| flagellar biosynthesis protein FliP [Bradyrhizobium japonicum USDA
           110]
 gi|27354093|dbj|BAC51081.1| flagellar biosynthetic protein [Bradyrhizobium japonicum USDA 110]
          Length = 250

 Score =  238 bits (606), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 114/212 (53%), Positives = 158/212 (74%), Gaps = 4/212 (1%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
            ++   ++   + T+LSIAP +LIM+T F R ++V S+LRT MG  + PPN VII+LA+F
Sbjct: 41  GVTERAIQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLRTAMGTATAPPNSVIIALAMF 100

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           +TF+VM P L +S + GI+PL+ NQI    A+QR + P   FM+ N REKDL LF+D++ 
Sbjct: 101 LTFFVMGPVLQKSYDEGIRPLVANQIGVEDALQRASVPLRGFMQKNVREKDLKLFLDLSG 160

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
                T     D +  RILIP+FMISEL+R+FEIGFL+ LPFLIID++VA+++M+MGMMM
Sbjct: 161 EPPPATP----DELALRILIPAFMISELKRAFEIGFLLFLPFLIIDLVVASVLMSMGMMM 216

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LPP +ISLPFK+IFFVL+DGWSL+  +LV+S+
Sbjct: 217 LPPATISLPFKLIFFVLVDGWSLVAGSLVQSY 248


>gi|84502361|ref|ZP_01000497.1| flagellar biosynthesis protein [Oceanicola batsensis HTCC2597]
 gi|84389173|gb|EAQ01970.1| flagellar biosynthesis protein [Oceanicola batsensis HTCC2597]
          Length = 277

 Score =  238 bits (606), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 116/218 (53%), Positives = 162/218 (74%), Gaps = 5/218 (2%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           +++  +++     T+LSIAP LL+++T F RF+IVFS+LR+ +G+   PPN+V+ S+ALF
Sbjct: 54  TLAGRLIQLVAAMTVLSIAPGLLVIMTSFTRFVIVFSMLRSALGLNQTPPNMVLSSMALF 113

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA- 152
           MTF+VM P  + + EMGI PL+NN ITE  A++R AEPF  FM  NTREKDL+LF D+A 
Sbjct: 114 MTFFVMQPVFEDAWEMGIDPLINNVITEEQALERTAEPFRTFMLANTREKDLALFQDIAA 173

Query: 153 ----HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
                +   N  + ++    +R L+P+FMISELRR+F IGFLI LPF+ ID+I+A+I+M+
Sbjct: 174 RSAGQTGADNLQVDEDGLPSWRSLVPAFMISELRRAFSIGFLIYLPFVAIDLIIASILMS 233

Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
            GMMMLPP  ISLPFKVIFFVLIDGW +L  +L++S++
Sbjct: 234 AGMMMLPPVLISLPFKVIFFVLIDGWYMLAGSLMESYL 271


>gi|146341897|ref|YP_001206945.1| flagellar biosynthesis protein FliP [Bradyrhizobium sp. ORS278]
 gi|146194703|emb|CAL78728.1| Flagellar transport protein FliP [Bradyrhizobium sp. ORS278]
          Length = 226

 Score =  236 bits (603), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 112/211 (53%), Positives = 158/211 (74%), Gaps = 4/211 (1%)

Query: 35  ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFM 94
           ++   V+   + T+LSIAP +L+M+T F R ++V S+LRT MG  + PPN VII+LA+F+
Sbjct: 18  VTERAVQLIALLTVLSIAPSILVMMTSFTRIVVVLSLLRTAMGTATAPPNSVIIALAMFL 77

Query: 95  TFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
           T +VM P L +S + G++PL+ NQIT   A+QR + P   FM+ N REKDL LFMD++  
Sbjct: 78  TAFVMGPVLQKSYDDGVRPLIENQITVEDALQRASVPLRGFMQKNVREKDLKLFMDLSGE 137

Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
           +   T     D +  RIL+P+FMISEL+R+FEIGFL+ LPFLIID++VA+++M+MGMMML
Sbjct: 138 APPATP----DELSLRILVPAFMISELKRAFEIGFLLFLPFLIIDLVVASVLMSMGMMML 193

Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           PP  +SLPFK+IFFVL+DGWSL+  +LV+S+
Sbjct: 194 PPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY 224


>gi|115523185|ref|YP_780096.1| flagellar biosynthesis protein FliP [Rhodopseudomonas palustris
           BisA53]
 gi|115517132|gb|ABJ05116.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris
           BisA53]
          Length = 244

 Score =  236 bits (602), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 122/213 (57%), Positives = 160/213 (75%), Gaps = 2/213 (0%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           S S  I++   + T+LS+AP LLIMVT F RF++  S LRTG+G+ + P N+V+ISLALF
Sbjct: 34  SASGRIIQMVALLTVLSLAPGLLIMVTSFTRFVVALSFLRTGLGLQTTPANIVMISLALF 93

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           +TFYVM+PT DR+   GIQPLM N+ITE  A  RV EPF  FM    R+KDL  F ++A 
Sbjct: 94  LTFYVMAPTFDRAWREGIQPLMQNEITEKEAYARVTEPFREFMLAQVRDKDLQTFENLAA 153

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
            S R       + ++ R++IP+FM+SELRR+FEIGFLI++PFL+IDMIVAT+ M+MGMMM
Sbjct: 154 ESLRAKP--DGERVDLRVIIPAFMVSELRRAFEIGFLIVMPFLVIDMIVATLTMSMGMMM 211

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +PPT  +LPFKV+FFVLIDGW+LL   LV+SF+
Sbjct: 212 MPPTVFALPFKVLFFVLIDGWNLLAVGLVRSFL 244


>gi|323136548|ref|ZP_08071629.1| flagellar biosynthetic protein FliP [Methylocystis sp. ATCC 49242]
 gi|322397865|gb|EFY00386.1| flagellar biosynthetic protein FliP [Methylocystis sp. ATCC 49242]
          Length = 243

 Score =  236 bits (602), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 120/236 (50%), Positives = 166/236 (70%), Gaps = 4/236 (1%)

Query: 11  LVTPELVFAKSSLHDVMNIP-ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVF 69
           ++TP + FA   L     +P    S S  I++  G  T+LSIAP LLIMVT F RF I  
Sbjct: 10  MMTPSIAFAAEGLDLNALLPNGAASSSGKIIQLLGALTVLSIAPGLLIMVTSFTRFAIAL 69

Query: 70  SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129
           S LRTG+G+ S P NLV+ISLALFMTFYVM+P ++++   G++PL+ N+ITE  A ++++
Sbjct: 70  SFLRTGLGLQSTPANLVLISLALFMTFYVMTPAMNQAWSSGVKPLVENKITEVEAFEKIS 129

Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189
            PF  FM  + R+KD+ LF D+          T+   ++  +LIP+FMISELRR FEIGF
Sbjct: 130 APFREFMIAHVRDKDIRLFEDLRKVEPSTKGKTE---LQLSVLIPAFMISELRRGFEIGF 186

Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LI++PFL ID+IVA + M+MGMMMLPP +ISLP K++FF+LIDGW+LL  +L++S+
Sbjct: 187 LIVVPFLAIDIIVAVLTMSMGMMMLPPATISLPAKILFFILIDGWNLLAGSLIRSY 242


>gi|312115243|ref|YP_004012839.1| flagellar biosynthetic protein FliP [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220372|gb|ADP71740.1| flagellar biosynthetic protein FliP [Rhodomicrobium vannielii ATCC
           17100]
          Length = 265

 Score =  234 bits (596), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 112/210 (53%), Positives = 157/210 (74%), Gaps = 6/210 (2%)

Query: 36  STWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMT 95
           S+ I++   + T+LS+AP +LIMVTCF RF+I  S LR G+G+ S P N++++SLALFMT
Sbjct: 61  SSRIIQLVLVITVLSLAPGILIMVTCFTRFVIALSFLRVGLGLPSTPANIILVSLALFMT 120

Query: 96  FYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSS 155
            + MSPT D++ E G++P M+ +++E  A Q++ +PF  FM  N R+KD+ LF  M+  +
Sbjct: 121 AFTMSPTFDKAWETGVKPFMDKKLSEDAAFQKITDPFREFMMANVRQKDIDLFAGMSPQA 180

Query: 156 HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
                 +       R LIP+FMISELRR FEIGFLI+LPFL+ID+I +T++MAMGMMM+ 
Sbjct: 181 ------SAEGATALRTLIPAFMISELRRGFEIGFLIMLPFLVIDLIASTVLMAMGMMMVS 234

Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           PT++SLPFKV+FF+LIDGW+LLV NLV+SF
Sbjct: 235 PTTVSLPFKVLFFILIDGWNLLVGNLVRSF 264


>gi|90423026|ref|YP_531396.1| flagellar biosynthesis protein FliP [Rhodopseudomonas palustris
           BisB18]
 gi|90105040|gb|ABD87077.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris
           BisB18]
          Length = 254

 Score =  233 bits (595), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 112/211 (53%), Positives = 157/211 (74%), Gaps = 4/211 (1%)

Query: 35  ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFM 94
           ++   ++   + T+LSIAP +LIM+T F R ++V S+LRT +G  + PPN VI++LALF+
Sbjct: 45  VTERAIQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLRTALGTATAPPNSVILALALFL 104

Query: 95  TFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
           T +VM P L +S + GI+PL+ NQIT   A+QR   P   FM+ N REKDL LFMD+++ 
Sbjct: 105 TAFVMGPVLQKSYDDGIKPLIANQITVEEALQRAVVPLRGFMQKNVREKDLKLFMDLSNE 164

Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
               T     D +  RIL+P+FMISEL+R+FEIGFL+ LPFLIID++VA+++M+MGMMML
Sbjct: 165 PIPATP----DDLSLRILVPAFMISELKRAFEIGFLLFLPFLIIDLVVASVLMSMGMMML 220

Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           PP  +SLPFK+IFFVL+DGWSL+  +LV+S+
Sbjct: 221 PPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY 251


>gi|83944189|ref|ZP_00956645.1| flagellar biosynthesis protein [Sulfitobacter sp. EE-36]
 gi|83955110|ref|ZP_00963766.1| flagellar biosynthesis protein [Sulfitobacter sp. NAS-14.1]
 gi|83840439|gb|EAP79612.1| flagellar biosynthesis protein [Sulfitobacter sp. NAS-14.1]
 gi|83845056|gb|EAP82937.1| flagellar biosynthesis protein [Sulfitobacter sp. EE-36]
          Length = 274

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 114/213 (53%), Positives = 159/213 (74%), Gaps = 1/213 (0%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           S+S  +++ F I T+LS+AP LL+MVT F RF+IVFS+LR  +G+   PPN+V+ ++ALF
Sbjct: 61  SLSGRLIQLFAIITVLSVAPGLLVMVTSFTRFVIVFSMLRLALGLNQTPPNIVLNAMALF 120

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           MTF+VM P  + + E G+ PLM N I E  A++ ++EPF+ FM  NTR+KDL LF D+A 
Sbjct: 121 MTFFVMQPVFEDAWEGGLVPLMENAIIEEQAVRNISEPFYNFMLVNTRDKDLQLFTDIAD 180

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
            +   +D        +R+L+PSFMISELRR+F IGFLI LPF+ ID+IVA+++M+ GMMM
Sbjct: 181 EASPPSD-GPAALPSWRVLVPSFMISELRRAFTIGFLIYLPFIAIDLIVASVLMSAGMMM 239

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           LPP  +SLPFKVIFFVLIDGW +L  +L++S++
Sbjct: 240 LPPVLVSLPFKVIFFVLIDGWYMLAGSLIQSYV 272


>gi|90422616|ref|YP_530986.1| flagellar biosynthesis protein FliP [Rhodopseudomonas palustris
           BisB18]
 gi|90104630|gb|ABD86667.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris
           BisB18]
          Length = 248

 Score =  232 bits (592), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 120/217 (55%), Positives = 162/217 (74%), Gaps = 2/217 (0%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P   S S  I++   + T+LS+AP LLIMVT F RF++  S LRTG+G+ + P N+V+IS
Sbjct: 34  PGGGSASGRIIQMVALLTVLSLAPGLLIMVTSFTRFVVALSFLRTGLGLQTTPANIVMIS 93

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           LALF+TFYVM+PT DR+   G+QPLM N+ITE  A  RV EPF  FM  + R+KDL  F 
Sbjct: 94  LALFLTFYVMAPTFDRAWRDGLQPLMQNEITEKEAYSRVTEPFREFMLAHVRDKDLQTFE 153

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
            +A  S R     + + ++ R++IP+FM+SELRR+FEIGFLI++PFL+IDM+VAT+ M+M
Sbjct: 154 SLAAESLRIRP--EGEKVDLRVIIPAFMVSELRRAFEIGFLIVMPFLVIDMVVATLTMSM 211

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           GMMM+PPT  +LPFKV+FFVLIDGW+LL   LV+S++
Sbjct: 212 GMMMMPPTVFALPFKVLFFVLIDGWNLLAVGLVRSYL 248


>gi|209964214|ref|YP_002297129.1| flagellar biosynthesis protein FliP [Rhodospirillum centenum SW]
 gi|209957680|gb|ACI98316.1| flagellar biosynthesis protein FliP [Rhodospirillum centenum SW]
          Length = 255

 Score =  231 bits (588), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 110/207 (53%), Positives = 155/207 (74%), Gaps = 4/207 (1%)

Query: 39  IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
           I++   + T+LS+AP +LIM+TCF R +IV S LR+ MG   VPPN V++SLALF+TF++
Sbjct: 50  IIQLVALLTVLSLAPSILIMMTCFVRIVIVLSFLRSAMGTQQVPPNQVLVSLALFLTFFI 109

Query: 99  MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
           M+P +  S   GI+PL+N  I E TA  R  EPF  FM  + RE+DL LF+D+A +    
Sbjct: 110 MAPVMQESYANGIRPLINEDIDELTAFNRAVEPFHGFMMKHVRERDLQLFLDIAKTG--- 166

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
             +     +  +++IP+FM+SEL+R+FEIGFL+ +PFL+IDM+VA+++M+MGMMMLPPT 
Sbjct: 167 -PVADPKDVPLQVVIPAFMLSELKRAFEIGFLVFVPFLVIDMVVASVLMSMGMMMLPPTL 225

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           I+LPFKVIFFVL+DGW L+V +LV+SF
Sbjct: 226 IALPFKVIFFVLVDGWYLIVGSLVQSF 252


>gi|115523568|ref|YP_780479.1| flagellar biosynthesis protein FliP [Rhodopseudomonas palustris
           BisA53]
 gi|115517515|gb|ABJ05499.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris
           BisA53]
          Length = 254

 Score =  231 bits (588), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 109/212 (51%), Positives = 156/212 (73%), Gaps = 4/212 (1%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
            ++   ++   + T+LSIAP +LIM+T F R ++V S+LRT +G  + PPN VI++LALF
Sbjct: 43  GVTERAIQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLRTALGTATAPPNAVILALALF 102

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           +T +VM P L +S + GI+PL+ NQIT   A +R  +P   FM+ N REKDL LF+D++ 
Sbjct: 103 LTGFVMGPVLQKSYDDGIKPLVANQITVEQAFERAVDPLRGFMQKNVREKDLKLFLDLSG 162

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
                T     D +  RIL+P+FMISEL+R+FEIGFL+ LPFL+ID++VA+++M+MGMMM
Sbjct: 163 EPPPATP----DAMSLRILVPAFMISELKRAFEIGFLLFLPFLVIDLVVASVLMSMGMMM 218

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LPP  +SLPFK+IFFVL+DGWSL+  +LV+S+
Sbjct: 219 LPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY 250


>gi|85716540|ref|ZP_01047510.1| flagellar biosynthesis protein [Nitrobacter sp. Nb-311A]
 gi|85696541|gb|EAQ34429.1| flagellar biosynthesis protein [Nitrobacter sp. Nb-311A]
          Length = 251

 Score =  230 bits (587), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 110/212 (51%), Positives = 157/212 (74%), Gaps = 4/212 (1%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
            +S   ++   + T+LSIAP +LIM+T F R ++V S+LRT +G  + PPN VII+LA+F
Sbjct: 42  GVSERAIQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLRTALGTATAPPNSVIIALAVF 101

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           +T +VM PTL +S + GI+PL+ N+IT   A+QR + P   FM+ N RE+DL LFMD++ 
Sbjct: 102 LTAFVMGPTLQKSYDDGIKPLVANEITVEEALQRASVPLRGFMQKNVREQDLKLFMDLSG 161

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
                T       +  RIL+P+FMISEL+R+FEIGFL+ LPFLIID++VA+++M+MGMMM
Sbjct: 162 EPPPKTP----AELSLRILMPAFMISELKRAFEIGFLLFLPFLIIDLVVASVLMSMGMMM 217

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LPP  +SLPFK+IFFVL+DGW+L+  +LV+S+
Sbjct: 218 LPPVVVSLPFKLIFFVLVDGWALVAGSLVQSY 249


>gi|288958044|ref|YP_003448385.1| flagellar biosynthetic protein [Azospirillum sp. B510]
 gi|288910352|dbj|BAI71841.1| flagellar biosynthetic protein [Azospirillum sp. B510]
          Length = 266

 Score =  230 bits (586), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 113/215 (52%), Positives = 158/215 (73%), Gaps = 4/215 (1%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
           A  + +  IV+T G+ T+LS+AP +LIM+T F R +IV S LR  +G+  VPP  V++SL
Sbjct: 53  AGGTATGRIVQTIGLITVLSLAPSILIMMTAFTRIVIVLSFLRNALGVQQVPPTTVMMSL 112

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           ALF+TF+VM+P  +RS   GIQPLMN +I E  A +R   P   FM ++T EKDL LFMD
Sbjct: 113 ALFLTFFVMAPVFERSYTQGIQPLMNQEIDEMEAFRRTVAPLRDFMLHHTAEKDLRLFMD 172

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           MA    R  ++ + + +   +L+P+FMISE++R FEIGFL+ LPFLIIDM+V++I+M+MG
Sbjct: 173 MA----RLQNVQEPNDMPLHVLVPAFMISEIKRGFEIGFLLFLPFLIIDMVVSSILMSMG 228

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMMLPPT +++PFK+IFFVL+DGW L+  +L +SF
Sbjct: 229 MMMLPPTMVAIPFKIIFFVLVDGWYLIAGSLARSF 263


>gi|154253010|ref|YP_001413834.1| flagellar biosynthetic protein FliP [Parvibaculum lavamentivorans
           DS-1]
 gi|154156960|gb|ABS64177.1| flagellar biosynthetic protein FliP [Parvibaculum lavamentivorans
           DS-1]
          Length = 248

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 110/218 (50%), Positives = 159/218 (72%), Gaps = 4/218 (1%)

Query: 28  NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87
           ++  +L ++  IV+   + T+LS+AP +LIMVT F R I+V S+LRT +GM   PPN V+
Sbjct: 33  DLSDNLGLTDHIVQIVALVTVLSLAPSILIMVTSFVRIIVVLSLLRTALGMQQSPPNAVL 92

Query: 88  ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147
           +SLALF+T +VM+PT   +   GI+PLMN QI    A +R + PF  FM +  R++DL L
Sbjct: 93  VSLALFLTAFVMTPTFTTAYNEGIEPLMNQQIETAEAFERSSVPFKTFMLSQVRKQDLQL 152

Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
           F+D++ +        +   I  ++++P+FMISELRR+FEIGFL+ LPF++IDM+VA+++M
Sbjct: 153 FVDLSQTEQPE----EATDIGLQVIVPAFMISELRRAFEIGFLVFLPFIVIDMVVASVLM 208

Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +MGMMMLPP  ISLPFK+IFFVL+DGWSL+  +LV+SF
Sbjct: 209 SMGMMMLPPVIISLPFKLIFFVLVDGWSLIAGSLVQSF 246


>gi|92116943|ref|YP_576672.1| flagellar biosynthesis protein FliP [Nitrobacter hamburgensis X14]
 gi|91799837|gb|ABE62212.1| flagellar biosynthetic protein FliP [Nitrobacter hamburgensis X14]
          Length = 251

 Score =  229 bits (584), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 117/246 (47%), Positives = 169/246 (68%), Gaps = 7/246 (2%)

Query: 3   RYCFFALFLVTPELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           R   F L L+    +   +   D+   +    +  ++   ++   + T+LSIAP +LIM+
Sbjct: 8   RRVLFVLVLIAAGSLADPAFAQDISINLGGAGNGGVTERAIQLIALLTVLSIAPSILIMM 67

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R ++V S+LRT +G  + PPN VII+LA+F+T +VM PTL +S + GI+PL+ NQI
Sbjct: 68  TSFTRIVVVLSLLRTALGTATAPPNSVIIALAMFLTAFVMGPTLQKSYDDGIKPLVANQI 127

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           T   A+QR + P   FM+ N RE+DL LF+D+   S      T  D +  RIL+P+FMIS
Sbjct: 128 TVEEALQRASVPLRGFMQKNVREQDLKLFIDL---SGEPPPATPAD-LSLRILMPAFMIS 183

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+R+FEIGFL+ LPFLIID++VA+++M+MGMMMLPP  +SLPFK+IFFVL+DGWSL+  
Sbjct: 184 ELKRAFEIGFLLFLPFLIIDLVVASVLMSMGMMMLPPVVVSLPFKLIFFVLVDGWSLVAG 243

Query: 240 NLVKSF 245
           +LV+S+
Sbjct: 244 SLVQSY 249


>gi|86750888|ref|YP_487384.1| flagellar biosynthesis protein FliP [Rhodopseudomonas palustris
           HaA2]
 gi|86573916|gb|ABD08473.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris
           HaA2]
          Length = 254

 Score =  229 bits (583), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 108/212 (50%), Positives = 159/212 (75%), Gaps = 4/212 (1%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
            ++   ++   + T+LSIAP +LIM+T F R ++V S+LRT +G  + PPN+VII+LALF
Sbjct: 43  GVTERAIQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLRTALGTATAPPNMVIIALALF 102

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           +T +VM PTL +S + GI+PL+ N+++   A+ R + P  +FM+ N REKDL LF+D++ 
Sbjct: 103 LTAFVMGPTLQKSYDDGIKPLIANEMSVEDALVRASGPLRIFMQKNVREKDLKLFLDLSG 162

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
                T     + +  RIL+P+FMISEL+R+FEIGFL+ LPFLIID++VA+++M+MGMMM
Sbjct: 163 EPPPATP----EDLSLRILMPAFMISELKRAFEIGFLLFLPFLIIDLVVASVLMSMGMMM 218

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LPP  +SLPFK+IFFVL+DGWSL+  +LV+S+
Sbjct: 219 LPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY 250


>gi|288962691|ref|YP_003452985.1| flagellar biosynthetic protein [Azospirillum sp. B510]
 gi|288914957|dbj|BAI76441.1| flagellar biosynthetic protein [Azospirillum sp. B510]
          Length = 279

 Score =  228 bits (581), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 106/223 (47%), Positives = 161/223 (72%), Gaps = 11/223 (4%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           S+S  IV+   + T+LS+AP LLIMVTCF R I+V S+LR+ +G+   PPN+V++SLA+F
Sbjct: 55  SLSGRIVQGIVLLTVLSVAPGLLIMVTCFTRIIVVLSLLRSALGLQQSPPNMVLVSLAMF 114

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM---- 149
           +TF++M P +D + + G++PL+N Q+T+   ++R+ EPF  FM ++ RE+DL+ F     
Sbjct: 115 LTFHIMGPVIDSAWQDGLRPLLNEQVTQEQGLERMIEPFRGFMASHVRERDLAAFAAFTA 174

Query: 150 -------DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202
                  + A    ++      + ++ R+L+P+F++SELRR+FEIGFL+ LPFL+IDM+V
Sbjct: 175 KPKPAGEEAAQPPEKDGRPVTAESVDLRLLMPAFLLSELRRAFEIGFLLFLPFLVIDMVV 234

Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           A I+MAMGMMMLPP  I+LPFK+IFFVL DGW L+  +L++S+
Sbjct: 235 AAILMAMGMMMLPPVMIALPFKIIFFVLTDGWFLIAGSLIRSY 277


>gi|39936951|ref|NP_949227.1| flagellar biosynthesis protein FliP [Rhodopseudomonas palustris
           CGA009]
 gi|192292779|ref|YP_001993384.1| flagellar biosynthesis protein FliP [Rhodopseudomonas palustris
           TIE-1]
 gi|39650808|emb|CAE29331.1| putative flagellar biosynthesis protein fliP [Rhodopseudomonas
           palustris CGA009]
 gi|192286528|gb|ACF02909.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris
           TIE-1]
          Length = 254

 Score =  228 bits (580), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 108/212 (50%), Positives = 157/212 (74%), Gaps = 4/212 (1%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
            ++   ++   + T+LSIAP +L+M+T F R ++V S+LRT +G  + PPN VII+LALF
Sbjct: 43  GVTERAIQLIALLTVLSIAPSILVMMTSFTRIVVVLSLLRTALGTATAPPNAVIIALALF 102

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           +T +VM PTL +S + GI+PL+ N+I    A+ R + P  +FM+ N REKDL LF+D++ 
Sbjct: 103 LTAFVMGPTLQKSYDEGIKPLIANEIGVDDAMVRASGPLRIFMQKNVREKDLKLFLDLSG 162

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
                T     + +  RIL+P+F+ISEL+R+FEIGFL+ LPFLIID++VA+I+M+MGMMM
Sbjct: 163 EPPPATP----EDLSLRILMPAFLISELKRAFEIGFLLFLPFLIIDLVVASILMSMGMMM 218

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LPP  +SLPFK+IFFVL+DGWSL+  +LV+S+
Sbjct: 219 LPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY 250


>gi|75675323|ref|YP_317744.1| flagellar biosynthesis protein FliP [Nitrobacter winogradskyi
           Nb-255]
 gi|74420193|gb|ABA04392.1| Flagellar transport protein FliP [Nitrobacter winogradskyi Nb-255]
          Length = 251

 Score =  227 bits (579), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 117/246 (47%), Positives = 170/246 (69%), Gaps = 8/246 (3%)

Query: 3   RYCFFALFLVTPELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           R  FF L L+T   +   +   D+   +    +  ++   ++   + T+LSIAP +LIM+
Sbjct: 9   RVSFF-LILITAGSLTDPALAQDISINLGGAGNGGVTERAIQLIALLTVLSIAPSILIMM 67

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R ++V S+LRT +G  + PPN VII+LA+F+T +VM PTL +S + GI+PL+ N+ 
Sbjct: 68  TSFTRIVVVLSLLRTALGTATAPPNSVIIALAMFLTAFVMGPTLQKSYDEGIKPLVANET 127

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           T   A+QR + P   FM+ N RE+DL LFMD+   S      T  D +  RIL+P+FMIS
Sbjct: 128 TVEEALQRASVPLRGFMQKNVREQDLKLFMDL---SGEPPPATPAD-LSLRILMPAFMIS 183

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+R+FEIGFL+ LPFLIID++VA+++M+MGMMMLPP  +SLPFK+IFFVL+DGW+L+  
Sbjct: 184 ELKRAFEIGFLLFLPFLIIDLVVASVLMSMGMMMLPPVVVSLPFKLIFFVLVDGWALVAG 243

Query: 240 NLVKSF 245
           +LV+S+
Sbjct: 244 SLVQSY 249


>gi|91976169|ref|YP_568828.1| flagellar biosynthesis protein FliP [Rhodopseudomonas palustris
           BisB5]
 gi|91682625|gb|ABE38927.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris
           BisB5]
          Length = 255

 Score =  227 bits (579), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 107/212 (50%), Positives = 157/212 (74%), Gaps = 4/212 (1%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
            ++   ++   + T+LSIAP +L+M+T F R ++V S+LRT +G  + PPN VII+LALF
Sbjct: 44  GVTERAIQLIALLTVLSIAPSILVMMTSFTRIVVVLSLLRTALGTATAPPNSVIIALALF 103

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           +T +VM PTL +S + GI+PL+ N++    A+ R + P  +FM+ N REKDL LF+D++ 
Sbjct: 104 LTGFVMGPTLQKSYDDGIKPLIANEMAVEDALVRASGPLRIFMQKNVREKDLKLFLDLSG 163

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
                T     + +  RIL+P+FMISEL+R+FEIGFL+ LPFLIID++VA+++M+MGMMM
Sbjct: 164 EQPPATP----EELSLRILMPAFMISELKRAFEIGFLLFLPFLIIDLVVASVLMSMGMMM 219

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LPP  +SLPFK+IFFVL+DGWSL+  +LV+S+
Sbjct: 220 LPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY 251


>gi|163744333|ref|ZP_02151693.1| flagellar biosynthetic protein FliP [Oceanibulbus indolifex HEL-45]
 gi|161381151|gb|EDQ05560.1| flagellar biosynthetic protein FliP [Oceanibulbus indolifex HEL-45]
          Length = 278

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 113/234 (48%), Positives = 163/234 (69%), Gaps = 8/234 (3%)

Query: 21  SSLHDVMNIPA-----DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTG 75
            +L DV+   A     + ++S  IV+   + T+LSIAP LL+++T F RF+IV S+LR+ 
Sbjct: 40  GTLSDVIGDSAPGSDENANLSGRIVQFIALMTVLSIAPGLLVVMTSFTRFVIVLSMLRSA 99

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVF 135
           +G+   PPN+V+ SLALFMTF+VM P  + + E G+QPL+ N I E  A++R+A PF  F
Sbjct: 100 LGLNQTPPNIVLTSLALFMTFFVMQPVFEDAYEAGVQPLLENAIAEEQALERIAAPFKSF 159

Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDI---TKNDHIEYRILIPSFMISELRRSFEIGFLII 192
           M  NTR +D +LF+ +A +     +       +   +R L+P+FMISELRR+F IGFLI 
Sbjct: 160 MYVNTRPEDYALFLRIAPADEEAEETPLPASAEEATFRHLVPAFMISELRRAFTIGFLIY 219

Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           LPF+ ID+I+A+++M+ GMMMLPP  ISLPFKVIFFVLIDGW +L  +L++S++
Sbjct: 220 LPFVAIDLIIASVLMSAGMMMLPPVLISLPFKVIFFVLIDGWYMLAGSLIESYV 273


>gi|316932831|ref|YP_004107813.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris
           DX-1]
 gi|315600545|gb|ADU43080.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris
           DX-1]
          Length = 255

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 109/212 (51%), Positives = 157/212 (74%), Gaps = 4/212 (1%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
            ++   ++   + T+LSIAP +LIM+T F R ++V S+LRT +G  + PPN VII+LALF
Sbjct: 44  GVTERAIQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLRTALGTATAPPNAVIIALALF 103

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           +T +VM PTL ++ + GI+PL+ N+I    A+ R + P  VFM+ N REKDL LF+D++ 
Sbjct: 104 LTAFVMGPTLQKAYDDGIKPLIANEIGVDDALVRASGPMRVFMQKNVREKDLKLFLDLSG 163

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
                T     + +  RIL+P+F+ISEL+R+FEIGFL+ LPFLIID++VA+I+M+MGMMM
Sbjct: 164 EPPPATP----EDLSLRILMPAFLISELKRAFEIGFLLFLPFLIIDLVVASILMSMGMMM 219

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LPP  +SLPFK+IFFVL+DGWSL+  +LV+S+
Sbjct: 220 LPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY 251


>gi|46200839|ref|ZP_00056386.2| COG1338: Flagellar biosynthesis pathway, component FliP
           [Magnetospirillum magnetotacticum MS-1]
          Length = 241

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 105/212 (49%), Positives = 155/212 (73%), Gaps = 4/212 (1%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           S ++ I++   + T+LS+AP +L+M+T F RF++V   LR  +G    PPN V++SLA+F
Sbjct: 33  SATSRIIQLIALTTVLSVAPSILVMITSFTRFVVVLGFLRQALGTQQSPPNTVMVSLAMF 92

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           +T +VM+PT +++   GIQP+M+  + E    +R  +PF  FM  + R +DL LFMDM+ 
Sbjct: 93  LTAFVMTPTFEKAWTDGIQPVMDGHLDEIEGFERAIKPFHAFMSKHVRAQDLKLFMDMS- 151

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
              R  ++ K + +  R LIP+FMISELRR+FEIGFLI LPFLIIDM++A+++M+MGMMM
Sbjct: 152 ---RAKEVEKAEDVPLRALIPAFMISELRRAFEIGFLIFLPFLIIDMVIASVLMSMGMMM 208

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +PP  ISLPFK+IFFV++DGW L+V +LV+S+
Sbjct: 209 IPPAMISLPFKLIFFVMVDGWYLVVGSLVQSY 240


>gi|158422252|ref|YP_001523544.1| flagellar biosynthetic FliP protein [Azorhizobium caulinodans ORS
           571]
 gi|158329141|dbj|BAF86626.1| flagellar biosynthetic FliP protein [Azorhizobium caulinodans ORS
           571]
          Length = 292

 Score =  226 bits (577), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 129/260 (49%), Positives = 171/260 (65%), Gaps = 30/260 (11%)

Query: 16  LVFAKSSLHDVMNIPA--------DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67
           L +A++ +     IP+          ++S  I++   + T+LSIAP LLIMVT F RF+I
Sbjct: 32  LAYAQNRVQGDTQIPSLDSLLGDNGGAVSGRIIQMVMVLTVLSIAPGLLIMVTSFTRFVI 91

Query: 68  VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
             S LR+G+G+ S P NLV+ISL+LFMTFYVM PT D++   G++PL   +ITE  A  +
Sbjct: 92  ALSFLRSGLGLSSTPANLVLISLSLFMTFYVMGPTFDKAWTEGVRPLTERKITEEEAFTK 151

Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAH----------------------SSHRNTDITKND 165
           ++EPF  FM +  R KDL LF D+A                       S +R+ +     
Sbjct: 152 ISEPFREFMLSQVRPKDLRLFADIAAATGRPSKNDPETAAQNNSAPATSPNRDQNAQPER 211

Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225
            IE RILIP+FMISELRR FEIGFLIILPFLIIDMIVAT+VM+MGMMM+ P +++LPFK+
Sbjct: 212 QIELRILIPAFMISELRRGFEIGFLIILPFLIIDMIVATLVMSMGMMMMSPAALALPFKI 271

Query: 226 IFFVLIDGWSLLVENLVKSF 245
           +FFVLIDGW++LV  LV+SF
Sbjct: 272 LFFVLIDGWNILVSGLVRSF 291


>gi|163849877|ref|YP_001637920.1| flagellar biosynthetic protein FliP [Methylobacterium extorquens
           PA1]
 gi|163661482|gb|ABY28849.1| flagellar biosynthetic protein FliP [Methylobacterium extorquens
           PA1]
          Length = 253

 Score =  226 bits (576), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 103/202 (50%), Positives = 150/202 (74%), Gaps = 4/202 (1%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            + T+L++AP +L+M T F R ++V SILR+ +G  + PPN V++SLALF+T +VM+PT 
Sbjct: 54  ALITVLALAPSVLVMATSFTRIVVVLSILRSALGTQTAPPNTVMVSLALFLTAFVMAPTA 113

Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163
             +   G++PLM  QI+++ A +R + PF  FM  N REKDL LF+DMA    R      
Sbjct: 114 REAYRTGVEPLMAGQISQSQAFERASAPFKTFMLRNVREKDLKLFLDMA----RQPAPAG 169

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
            + I   I+ P+FMISELRR+FEIGFL+ +PFLIID++VA+++MAMGMMMLPP +++LPF
Sbjct: 170 PEAIGLEIVTPAFMISELRRAFEIGFLLFIPFLIIDLVVASVLMAMGMMMLPPATVALPF 229

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K+IFFVL+DGW+L+  +L++S+
Sbjct: 230 KLIFFVLVDGWTLVAGSLIQSY 251


>gi|328543163|ref|YP_004303272.1| flagellar transport protein FliP [polymorphum gilvum SL003B-26A1]
 gi|326412909|gb|ADZ69972.1| Flagellar transport protein FliP [Polymorphum gilvum SL003B-26A1]
          Length = 245

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 106/212 (50%), Positives = 157/212 (74%), Gaps = 4/212 (1%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           S++   V+   + T+LS+AP +L+MVT F R ++V S+LR+ +G+ + PPN+V++SLALF
Sbjct: 35  SLTERAVQLVALLTVLSLAPSILVMVTSFTRIVVVLSLLRSAIGLQTAPPNMVMVSLALF 94

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           +T ++M+PTL  + E G+QPL+   I    A +R + PF  FM +  REKDL+LF +++ 
Sbjct: 95  LTAFIMAPTLQVAYEEGVQPLVEGTIEFDQAFERASTPFHAFMLSQVREKDLALFQELSG 154

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
                T     + + ++ LIP+FMISELRR+FEIGFL+ LPFLIID++VA+++M+MGMMM
Sbjct: 155 QEAPET----QEDLSFQTLIPAFMISELRRAFEIGFLLYLPFLIIDLVVASVLMSMGMMM 210

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LPP  ISLPFK+IFFVL+DGW+L+  +LV+SF
Sbjct: 211 LPPVVISLPFKLIFFVLVDGWNLVAGSLVRSF 242


>gi|218528509|ref|YP_002419325.1| flagellar biosynthetic protein FliP [Methylobacterium
           chloromethanicum CM4]
 gi|240137103|ref|YP_002961572.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens
           AM1]
 gi|218520812|gb|ACK81397.1| flagellar biosynthetic protein FliP [Methylobacterium
           chloromethanicum CM4]
 gi|240007069|gb|ACS38295.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens
           AM1]
          Length = 253

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 103/202 (50%), Positives = 150/202 (74%), Gaps = 4/202 (1%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            + T+L++AP +L+M T F R ++V SILR+ +G  + PPN V++SLALF+T +VM+PT 
Sbjct: 54  ALITVLALAPSVLVMATSFTRIVVVLSILRSALGTQTAPPNTVMVSLALFLTAFVMAPTA 113

Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163
             +   G++PLM  QI+++ A +R + PF  FM  N REKDL LF+DMA    R      
Sbjct: 114 REAYRTGVEPLMAGQISQSQAFERASAPFKTFMLRNVREKDLKLFLDMA----RQPAPAG 169

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
            + I   I+ P+FMISELRR+FEIGFL+ +PFLIID++VA+++MAMGMMMLPP +++LPF
Sbjct: 170 PEAIGLEIVTPAFMISELRRAFEIGFLLFIPFLIIDLVVASVLMAMGMMMLPPATVALPF 229

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K+IFFVL+DGW+L+  +L++S+
Sbjct: 230 KLIFFVLVDGWTLVAGSLIQSY 251


>gi|254559115|ref|YP_003066210.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens
           DM4]
 gi|254266393|emb|CAX22157.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens
           DM4]
          Length = 253

 Score =  225 bits (574), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 103/202 (50%), Positives = 150/202 (74%), Gaps = 4/202 (1%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            + T+L++AP +L+M T F R ++V SILR+ +G  + PPN V++SLALF+T +VM+PT 
Sbjct: 54  ALITVLALAPSVLVMATSFTRIVVVLSILRSALGTQTAPPNTVMVSLALFLTAFVMAPTA 113

Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163
             +   G++PLM  QI+++ A +R + PF  FM  N REKDL LF+DMA    R      
Sbjct: 114 REAYRTGVEPLMAGQISQSQAFERASAPFKTFMLRNVREKDLKLFLDMA----RQPAPAG 169

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
            + I   I+ P+FMISELRR+FEIGFL+ +PFLIID++VA+++MAMGMMMLPP +++LPF
Sbjct: 170 PEAIGLEIVTPAFMISELRRAFEIGFLLFIPFLIIDLVVASVLMAMGMMMLPPATVALPF 229

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K+IFFVL+DGW+L+  +L++S+
Sbjct: 230 KLIFFVLVDGWTLVAGSLIQSY 251


>gi|89068716|ref|ZP_01156102.1| flagellar biosynthesis protein [Oceanicola granulosus HTCC2516]
 gi|89045679|gb|EAR51741.1| flagellar biosynthesis protein [Oceanicola granulosus HTCC2516]
          Length = 282

 Score =  225 bits (574), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 116/221 (52%), Positives = 159/221 (71%), Gaps = 9/221 (4%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
            +S  I++   + T+LS+AP LLI++T F RF+IVFSILR+ +G+   PPN+V+ S+ALF
Sbjct: 58  ELSGRILQLIALITVLSLAPGLLIVMTSFTRFVIVFSILRSALGLNQTPPNVVLTSMALF 117

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           MTF+VM P  + + E G+QPLM+N ITE  A++R+A+PF  FM  NTR  DL LF ++A 
Sbjct: 118 MTFFVMQPVFEDAWEDGLQPLMSNAITEEQAVERIADPFKTFMFANTRPVDLDLFREIAA 177

Query: 154 SSHRNTDI--------TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
            +  +           T  D   +R L+P+FMISELRR+F IGFLI LPF+ ID+IVA+I
Sbjct: 178 RAGGDDAGAIELPPPETAADA-SWRELVPAFMISELRRAFTIGFLIFLPFIAIDLIVASI 236

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +M+ GMMMLPP  ISLPFKVIFFVLIDGW +L  +L++S++
Sbjct: 237 LMSAGMMMLPPVLISLPFKVIFFVLIDGWHMLAGSLIESYL 277


>gi|188579766|ref|YP_001923211.1| flagellar biosynthetic protein FliP [Methylobacterium populi BJ001]
 gi|179343264|gb|ACB78676.1| flagellar biosynthetic protein FliP [Methylobacterium populi BJ001]
          Length = 253

 Score =  225 bits (573), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 102/201 (50%), Positives = 150/201 (74%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T+L++AP +L+M T F R ++V SILR+ +G  + PPN V++SLALF+T +VM+PT  
Sbjct: 55  LITVLALAPSVLVMATSFTRIVVVLSILRSALGTQTAPPNTVMVSLALFLTAFVMAPTAR 114

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
            +   G++PL+  QI+++ A +R + PF  FM  N REKDL LF+DMA    R       
Sbjct: 115 EAYRAGVEPLVAGQISQSQAFERASAPFKTFMLRNVREKDLKLFLDMA----RQPAPAGP 170

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           + I   I+ P+FMISELRR+FEIGFL+ +PFLIID++VA+++MAMGMMMLPP +++LPFK
Sbjct: 171 EAIGLEIVTPAFMISELRRAFEIGFLLFIPFLIIDLVVASVLMAMGMMMLPPATVALPFK 230

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           +IFFVL+DGW+L+  +L++S+
Sbjct: 231 LIFFVLVDGWTLVAGSLIQSY 251


>gi|220925383|ref|YP_002500685.1| flagellar biosynthetic protein FliP [Methylobacterium nodulans ORS
           2060]
 gi|219949990|gb|ACL60382.1| flagellar biosynthetic protein FliP [Methylobacterium nodulans ORS
           2060]
          Length = 251

 Score =  224 bits (570), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 108/231 (46%), Positives = 160/231 (69%), Gaps = 8/231 (3%)

Query: 19  AKSSLHDVMNIPADLSISTWI----VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74
           A +S     ++  DL  S  +    ++   + T+L++AP +L+M T F R ++V SILR+
Sbjct: 23  ASASGALAQSVTVDLGPSGGVTERALQLVALITVLALAPSVLVMATSFTRIVVVLSILRS 82

Query: 75  GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134
            +G  + PPN VI+SLALF+T +VM+PT   +   GI+PL+  QI ++ A +R A PF  
Sbjct: 83  ALGTQTAPPNAVIVSLALFLTAFVMAPTARDAYRAGIEPLVAGQIQQSQAFERAAAPFKA 142

Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
           FM    REKDL LF+D+A +    T     + +   IL P+FMISELRR+FEIGFL+ +P
Sbjct: 143 FMLRTVREKDLQLFLDLAKAPRPATP----EAVGLEILTPAFMISELRRAFEIGFLLFIP 198

Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           FLIID++VA+I+M++GMMMLPP +++LPFK+IFFVL+DGW+L+  +LV+S+
Sbjct: 199 FLIIDLVVASILMSVGMMMLPPATVALPFKLIFFVLVDGWTLVAGSLVQSY 249


>gi|299131778|ref|ZP_07024973.1| flagellar biosynthetic protein FliP [Afipia sp. 1NLS2]
 gi|298591915|gb|EFI52115.1| flagellar biosynthetic protein FliP [Afipia sp. 1NLS2]
          Length = 252

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 105/212 (49%), Positives = 153/212 (72%), Gaps = 4/212 (1%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
            ++   ++   + T+LS+AP +L+M+T F R ++V S+LRT MG  + PPN V+I+LALF
Sbjct: 42  GVTARAIQLIALLTVLSVAPSILVMMTSFTRIVVVLSLLRTAMGTATAPPNSVMIALALF 101

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           +T +VM P L +S + G++P++ NQ+T    +     P   FM+ N REKDL LFMD++ 
Sbjct: 102 LTGFVMGPVLQKSYDDGVKPVIANQLTVEQGLPLAIAPLRGFMQKNVREKDLKLFMDLSR 161

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
                T     D +  RILIP+FMISEL+R+FEIGFL+ LPFLIID++V++++M+MGMMM
Sbjct: 162 EPPPATP----DEMSLRILIPAFMISELKRAFEIGFLLFLPFLIIDLVVSSVLMSMGMMM 217

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LPP  +SLPFK+IFFVL+DGWSL+  +LV+S+
Sbjct: 218 LPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY 249


>gi|83309709|ref|YP_419973.1| flagellar biosynthesis protein FliP [Magnetospirillum magneticum
           AMB-1]
 gi|82944550|dbj|BAE49414.1| Flagellar biosynthesis pathway [Magnetospirillum magneticum AMB-1]
          Length = 250

 Score =  223 bits (567), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 104/212 (49%), Positives = 153/212 (72%), Gaps = 4/212 (1%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           S ++ I++   + T+LS+AP +L+MVT F RF++V   LR  +G    PPN V++SLA+F
Sbjct: 42  SATSRIIQLIALTTVLSVAPSILVMVTSFTRFVVVLGFLRQALGTQQSPPNTVMVSLAMF 101

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           +T +VM+PT +++   GI P+M+  + E    +R  +PF  FM  + R +DL LFMD++ 
Sbjct: 102 LTAFVMAPTFEKAWTDGIAPVMDGHLDEIEGFERAVKPFHAFMSKHVRGQDLKLFMDLS- 160

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
              R  ++ K +    R LIP+FMISELRR+FEIGFLI LPFLIIDM++A+++M+MGMMM
Sbjct: 161 ---RAKEVEKAEDAPLRALIPAFMISELRRAFEIGFLIFLPFLIIDMVIASVLMSMGMMM 217

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +PP  ISLPFK+IFFV++DGW L+V +LV+S+
Sbjct: 218 IPPAMISLPFKLIFFVMVDGWYLVVGSLVQSY 249


>gi|254504560|ref|ZP_05116711.1| flagellar biosynthetic protein FliP [Labrenzia alexandrii DFL-11]
 gi|222440631|gb|EEE47310.1| flagellar biosynthetic protein FliP [Labrenzia alexandrii DFL-11]
          Length = 255

 Score =  223 bits (567), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 109/214 (50%), Positives = 160/214 (74%), Gaps = 4/214 (1%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D +++   V+   + T+LS+AP +L+MVT F R ++V S+LR+ +G+ + PPN+V++SLA
Sbjct: 43  DANLTERAVQLVILLTVLSLAPSILVMVTSFTRIVVVLSLLRSAIGLQTAPPNMVMVSLA 102

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           LF++ ++M PTL  + + G+QPL++  I    A +R +EPF  FM +  REKDL LF ++
Sbjct: 103 LFLSAFIMMPTLQAAYDAGVQPLIDGDIEIDQAYERASEPFRDFMLSQVREKDLMLFQEL 162

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
              S R+   T  D +E  +LIP+FMISELRR+FEIGFL+ LPFLIID+++A+++M+MGM
Sbjct: 163 ---SGRDAPETPED-LEMAVLIPAFMISELRRAFEIGFLLYLPFLIIDLVIASVLMSMGM 218

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMLPP  ISLPFK+IFFVL+DGW+L+  +LVKSF
Sbjct: 219 MMLPPVVISLPFKLIFFVLVDGWNLVAGSLVKSF 252


>gi|170743261|ref|YP_001771916.1| flagellar biosynthetic protein FliP [Methylobacterium sp. 4-46]
 gi|168197535|gb|ACA19482.1| flagellar biosynthetic protein FliP [Methylobacterium sp. 4-46]
          Length = 283

 Score =  222 bits (566), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 100/202 (49%), Positives = 153/202 (75%), Gaps = 4/202 (1%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            + T+L++AP +L+M T F R ++V SILR+ +G  + PPN VI+SLALF+T +VM+PT 
Sbjct: 84  ALITVLALAPSVLVMATAFTRIVVVLSILRSALGTQTAPPNAVIVSLALFLTAFVMAPTA 143

Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163
             +   GI+PL+  QI+++ A +R ++PF  FM  + REKDL LF+D++++    T    
Sbjct: 144 REAYRTGIEPLVAGQISQSQAFERASQPFKAFMLRSVREKDLRLFLDLSNAPRPATP--- 200

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
            + +   IL P+FMISELRR+FEIGFL+ +PFLIID++VA+++M++GMMMLPP +++LPF
Sbjct: 201 -EAVGLEILTPAFMISELRRAFEIGFLLFIPFLIIDLVVASVLMSVGMMMLPPATVALPF 259

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K+IFFVL+DGW+L+  +LV+S+
Sbjct: 260 KLIFFVLVDGWTLVAGSLVQSY 281


>gi|300024600|ref|YP_003757211.1| flagellar biosynthetic protein FliP [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299526421|gb|ADJ24890.1| flagellar biosynthetic protein FliP [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 247

 Score =  222 bits (566), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 114/216 (52%), Positives = 162/216 (75%), Gaps = 2/216 (0%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
            D S+S  IV+   + T+LS+AP LL+MVT F RF+I  S LR+G+G+ + P N++++SL
Sbjct: 34  GDASVSGRIVQLLVVMTVLSVAPGLLMMVTSFARFVIALSFLRSGLGLQTTPSNMILVSL 93

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           ALFMT +VM+PT   + + G++P++ N+I++    QR  EPF  FM+ N REKD+++F D
Sbjct: 94  ALFMTMFVMAPTFQAAWDNGVKPMVENKISQEEGYQRTTEPFRAFMKANVREKDIAIFQD 153

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           +  S+ R  +  K    + R+LIP+FM+SELRR FEIGFL+ LPFL+ID++VATI+ +MG
Sbjct: 154 L--SAERFGEANKAGPDDLRVLIPAFMVSELRRGFEIGFLVTLPFLVIDLVVATIMTSMG 211

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           MMM+PPT +SLP K++FFVL+DGWSLLV  LVKSFI
Sbjct: 212 MMMMPPTVVSLPLKILFFVLVDGWSLLVGALVKSFI 247


>gi|209884533|ref|YP_002288390.1| flagellar biosynthetic protein FliP [Oligotropha carboxidovorans
           OM5]
 gi|209872729|gb|ACI92525.1| flagellar biosynthetic protein FliP [Oligotropha carboxidovorans
           OM5]
          Length = 253

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 102/215 (47%), Positives = 155/215 (72%), Gaps = 4/215 (1%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
            +  ++   ++   + T+LSIAP +L+M+T F R ++V S+LRT +G  + PPN V+I+L
Sbjct: 39  GNGGVTERAIQLIALLTVLSIAPSILVMMTSFTRIVVVLSLLRTALGTATAPPNSVMIAL 98

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           ALF+T +VM P L +S + G++P++ N+++     +R   P   FM+ N REKDL LFMD
Sbjct: 99  ALFLTGFVMGPVLQKSYDEGVKPVIANELSVEQGFERAVGPLRGFMQKNVREKDLKLFMD 158

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           ++      T     + +  RILIP+FMISEL+R+FEIGFL+ LPFLIID++V++++M+MG
Sbjct: 159 LSGEPPPATP----EEMSLRILIPAFMISELKRAFEIGFLLFLPFLIIDLVVSSVLMSMG 214

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMMLPP  +SLPFK+IFFVL+DGW+L+  +LV+S+
Sbjct: 215 MMMLPPVVVSLPFKLIFFVLVDGWALVAGSLVQSY 249


>gi|118588703|ref|ZP_01546111.1| flagellar biosynthesis protein P [Stappia aggregata IAM 12614]
 gi|118438689|gb|EAV45322.1| flagellar biosynthesis protein P [Stappia aggregata IAM 12614]
          Length = 237

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 103/214 (48%), Positives = 157/214 (73%), Gaps = 3/214 (1%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D +++   V+   + T+LS+AP +L+MVT F R ++V S+LR+ +G+ + PPN+V++SLA
Sbjct: 24  DTTLTERAVQMVILLTVLSLAPSILVMVTSFTRIVVVLSLLRSAIGLQTAPPNMVMVSLA 83

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           LF++ ++M PTL  S + G+QPL++  I    A +R ++PF  FM +  REKDL+LF ++
Sbjct: 84  LFLSAFIMMPTLQASYDAGVQPLIDGDIELEQAFERASDPFRTFMLSQVREKDLALFEEL 143

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           + +          + +    L+P+FMISELRR+FEIGFL+ LPFLIID+++A+++M+MGM
Sbjct: 144 SGAEEAPE---SPEDLSMATLVPAFMISELRRAFEIGFLLYLPFLIIDLVIASVLMSMGM 200

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMLPP  ISLPFK+IFFVL+DGW+L+  +LVKSF
Sbjct: 201 MMLPPVVISLPFKLIFFVLVDGWNLVAGSLVKSF 234


>gi|254292926|ref|YP_003058949.1| flagellar biosynthetic protein FliP [Hirschia baltica ATCC 49814]
 gi|254041457|gb|ACT58252.1| flagellar biosynthetic protein FliP [Hirschia baltica ATCC 49814]
          Length = 255

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 105/213 (49%), Positives = 153/213 (71%), Gaps = 4/213 (1%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
            +++ IV   G+ TILS+AP +L+M T F R ++V S+LRT MG+   PPN VIISL+LF
Sbjct: 42  GMTSGIVEMLGVITILSLAPSILVMTTSFVRIVVVLSLLRTAMGLQQAPPNAVIISLSLF 101

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           +T +VM+PT + + + G++P M   I    A+ R A P   FM  + ++ DL+LFM MA+
Sbjct: 102 LTAFVMAPTFEAAYKEGVEPFMAESIGLEDALPRAAAPIKTFMAKHVQDDDLALFMGMAN 161

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
                  +   +   +++L P+FMISEL+R+FEIGF+I LPFL+ID++VA+I+M+MGMMM
Sbjct: 162 IET----LESAEAAPFQVLAPAFMISELKRAFEIGFMIFLPFLVIDLVVASILMSMGMMM 217

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           LPP +IS+PFK+IFFVL+DGW LL  +LV+SF+
Sbjct: 218 LPPVTISMPFKLIFFVLVDGWRLLAGSLVESFV 250


>gi|296534353|ref|ZP_06896817.1| flagellar biosynthetic protein FliP [Roseomonas cervicalis ATCC
           49957]
 gi|296265319|gb|EFH11480.1| flagellar biosynthetic protein FliP [Roseomonas cervicalis ATCC
           49957]
          Length = 258

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 105/224 (46%), Positives = 156/224 (69%), Gaps = 4/224 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           SL+  +  P +   +T +V+   +  +LS+AP LL+MVT F R  IV S+LR+ +G   V
Sbjct: 35  SLNLDLGQPGEAGATTRLVQLTALIGLLSLAPSLLVMVTAFARISIVLSLLRSAIGAPGV 94

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PPN V+I LALF+TF+VM P L+ S   G+QP+   Q+ E   +Q  AEPF  FM  + R
Sbjct: 95  PPNPVLIGLALFLTFFVMQPVLEASWTQGLQPMAAGQLGEIEGLQAAAEPFRGFMLAHAR 154

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           + D++LF+D+A+       + +     +R+L+P+F++ ELRR+FEIGFLI LPFL+ID++
Sbjct: 155 DSDIALFLDLANLPA----VEEPARTPWRVLVPAFLVGELRRAFEIGFLIFLPFLVIDIV 210

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           VA+++M +GMMMLPP ++SLPFK+IFFVL+DGW L+  +LV+ F
Sbjct: 211 VASVLMGLGMMMLPPNTVSLPFKLIFFVLVDGWRLVSGSLVQGF 254


>gi|46204265|ref|ZP_00050254.2| COG1338: Flagellar biosynthesis pathway, component FliP
           [Magnetospirillum magnetotacticum MS-1]
          Length = 249

 Score =  219 bits (557), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 109/231 (47%), Positives = 158/231 (68%), Gaps = 7/231 (3%)

Query: 18  FAKSSLHDVMNIPADLS---ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74
           F  S+     ++  DLS   +S   ++   + T+LS+AP  L++VT F R ++VFSILR+
Sbjct: 21  FLGSTPASAQSLTIDLSSGGVSERALQLVALVTVLSLAPSALVVVTSFTRLVVVFSILRS 80

Query: 75  GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134
            +G  S PPN V+++LALF+T +VM+P   ++   GI PL+  +I +  A +R   PF  
Sbjct: 81  ALGTQSAPPNAVLVALALFLTAFVMAPVGRQAYTAGIAPLLAGEIQQGQAFERTLAPFRA 140

Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
           FM  N REKDL LF+ MA    +       + I   ++ P+FMISEL R+FEIGFL+ +P
Sbjct: 141 FMLKNVREKDLDLFLKMA----KTPPPASPEEIGLEVVTPAFMISELSRAFEIGFLLFIP 196

Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           F+IID+ V++++MA+GMMM+PPTS+SLPFK+IFFVL+DGWSLLV +LV+SF
Sbjct: 197 FMIIDLAVSSVLMALGMMMMPPTSVSLPFKLIFFVLVDGWSLLVGSLVQSF 247


>gi|254470348|ref|ZP_05083752.1| flagellar biosynthetic protein FliP [Pseudovibrio sp. JE062]
 gi|211960659|gb|EEA95855.1| flagellar biosynthetic protein FliP [Pseudovibrio sp. JE062]
          Length = 248

 Score =  218 bits (555), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 113/239 (47%), Positives = 163/239 (68%), Gaps = 5/239 (2%)

Query: 7   FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
           FALFL       A+S   D      D S++   V+   + T+LS+AP +LIMVT F R +
Sbjct: 13  FALFLFWFGPAAAQSISIDFGGGEGD-SVTERAVQLVMLLTVLSLAPSILIMVTSFTRIV 71

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           +V S+LR+ +G+ + PPN V++SLALF+T +VM P  + + ++G +P++   I    A +
Sbjct: 72  VVLSLLRSAIGLQTAPPNAVMLSLALFLTAFVMMPAFETAWDLGAKPMIEGTIEPQEAFE 131

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           R +EPF  FMR   RE DL LF ++A +    T     + +  R+L+P+FMISELRR+FE
Sbjct: 132 RASEPFHQFMRQQVRESDLLLFQELAKAPTPETP----EDLSLRVLVPAFMISELRRAFE 187

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGFL+ LPFLIID+++A+++M+MGMMMLPP  ISLPFK+IFFVL+DGW L+  +LV+SF
Sbjct: 188 IGFLLYLPFLIIDLVIASVLMSMGMMMLPPIVISLPFKLIFFVLVDGWQLIAGSLVRSF 246


>gi|58039965|ref|YP_191929.1| flagellar biosynthesis protein FliP [Gluconobacter oxydans 621H]
 gi|58002379|gb|AAW61273.1| Flagellar biosynthetic protein FliP [Gluconobacter oxydans 621H]
          Length = 255

 Score =  216 bits (550), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 106/237 (44%), Positives = 160/237 (67%), Gaps = 6/237 (2%)

Query: 11  LVTPELVFAKSSLHDVMNIPADLSIST--WIVRTFGIFTILSIAPILLIMVTCFPRFIIV 68
           L  P L  A++   D+    A     T   +V+   + T+LS+AP LL+M+T F R +IV
Sbjct: 21  LAFPHLAHAQAVSIDLGQNGASGGAGTTSRLVQLTALITVLSLAPSLLVMITAFTRIVIV 80

Query: 69  FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128
            S+LR+ +G   +PPN V+I LALF+T +VM PTL +S + GI+PLM  ++ E   +   
Sbjct: 81  LSLLRSALGAQGMPPNTVLIGLALFLTLFVMQPTLQKSWDAGIEPLMAGRVGEMEGLTAA 140

Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188
           A+PF  FM    R  D++ F+++AH         K     +R+L+P+FMI ELRR FE+G
Sbjct: 141 AQPFHDFMAVTARPADVATFLNIAH----EKPPAKIGDTPWRVLVPAFMIGELRRGFEMG 196

Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           FL+ LPFL+ID++V++++M++GMMMLPP+++SLPFK+IFFV++DGWSL+  +LV+SF
Sbjct: 197 FLLYLPFLVIDLVVSSVLMSLGMMMLPPSTVSLPFKLIFFVVVDGWSLVAGSLVRSF 253


>gi|144900473|emb|CAM77337.1| Type III secretion system inner membrane P protein
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 253

 Score =  216 bits (550), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 99/207 (47%), Positives = 150/207 (72%), Gaps = 4/207 (1%)

Query: 39  IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
           I++   + T+LS+AP +L+MVT F R +IV   LR  +G    PPN+V++SLA+F+T ++
Sbjct: 48  IIQLIALTTVLSVAPSILVMVTSFTRIVIVLGFLRQALGTMQSPPNMVLVSLAMFLTAFI 107

Query: 99  MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
           M+PTL++S   G+QP +   + E  A +   +P   FM  + R++DL LF+D++    R 
Sbjct: 108 MAPTLEQSWNDGVQPYVEGSLEEAAAFEATVKPLQTFMLRHVRDQDLQLFLDLS----RT 163

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
            D+ K +    + LIP+FMISELRR+FEIGFLI LPF++IDM++A+++M+MGMMM+PP  
Sbjct: 164 PDVAKAEDAPLKALIPAFMISELRRAFEIGFLIFLPFIVIDMVIASVLMSMGMMMIPPAM 223

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +SLPFK+IFFVL+DGW ++V +LV+SF
Sbjct: 224 VSLPFKLIFFVLVDGWYMVVGSLVQSF 250


>gi|170751431|ref|YP_001757691.1| flagellar biosynthetic protein FliP [Methylobacterium radiotolerans
           JCM 2831]
 gi|170657953|gb|ACB27008.1| flagellar biosynthetic protein FliP [Methylobacterium radiotolerans
           JCM 2831]
          Length = 255

 Score =  216 bits (549), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 98/202 (48%), Positives = 147/202 (72%), Gaps = 4/202 (1%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            + T+L++AP +L+M T F R ++V SILR+ +G  + PP  V++SLALF+T +VM+PT 
Sbjct: 56  ALITVLAVAPSVLVMATAFTRIVVVLSILRSALGTQTAPPTAVLVSLALFLTAFVMAPTG 115

Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163
             +   GI+PL+  +IT+  A +R + PF  FM  N REKDL LF+D+A           
Sbjct: 116 RAAYSAGIEPLIAGRITQAQAFERASAPFKTFMLRNVREKDLKLFLDLAKVPAPK----G 171

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
            + +   I+ P+FMISELRR+FEIGFL+ +PFLIID++VA+++MA+GMMM+PP +++LPF
Sbjct: 172 PEDVGLEIVTPAFMISELRRAFEIGFLLFIPFLIIDLVVASVLMAVGMMMVPPATVALPF 231

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K+IFFVL+DGW+L+  +LV+S+
Sbjct: 232 KLIFFVLVDGWTLVAGSLVQSY 253


>gi|114570490|ref|YP_757170.1| flagellar biosynthesis protein FliP [Maricaulis maris MCS10]
 gi|114340952|gb|ABI66232.1| flagellar biosynthetic protein FliP [Maricaulis maris MCS10]
          Length = 251

 Score =  215 bits (547), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 110/243 (45%), Positives = 166/243 (68%), Gaps = 5/243 (2%)

Query: 4   YCFFALFLVTPELVFAKSSLHDV-MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCF 62
           +CF    L    L+  ++    V ++   + +++  +++   + T+LS+AP ++IM T F
Sbjct: 9   FCFSLFLLGVITLIGFQADAQTVTIDAGQEGALTERVLQLMALLTVLSLAPSIIIMTTSF 68

Query: 63  PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122
            R I+V S+LRTG+G+   PPN V++SLA+FMT ++M+P   +S + GIQPL+N +I  T
Sbjct: 69  VRIIVVLSLLRTGLGLQQSPPNAVLVSLAIFMTGFIMAPVFTQSYDEGIQPLLNEEIELT 128

Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182
            A      P   FM ++ RE DL+LF+DM+  +   +     +   + I+ P+FMISELR
Sbjct: 129 EAFDLSTAPLKTFMLSHVREDDLALFIDMSQEAVPESP----EATSFWIVAPAFMISELR 184

Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
           R+FEIGFL+ +PFLIID++VA+I+M+MGMMMLPP  ISLPFK+IFFVL+DGW L+V +LV
Sbjct: 185 RAFEIGFLLFIPFLIIDLVVASILMSMGMMMLPPIVISLPFKLIFFVLVDGWRLVVGSLV 244

Query: 243 KSF 245
           +SF
Sbjct: 245 QSF 247


>gi|307637369|gb|ADN79819.1| Flagellar biosynthesis protein [Helicobacter pylori 908]
 gi|325997557|gb|ADZ49765.1| Flagellar biosynthesis protein [Helicobacter pylori 2017]
          Length = 250

 Score =  214 bits (546), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 111/248 (44%), Positives = 167/248 (67%), Gaps = 10/248 (4%)

Query: 4   YCFFALFLVTP---ELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLI 57
           + F  L L+ P    L+ A S+L  V   +N P+D       +    + T+L +AP L++
Sbjct: 4   FIFLMLALICPLICPLMSADSALPSVNLSLNAPSDPKQLVTTLNVIALLTLLVLAPSLIL 63

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           ++T F R I+VFS LRT +G    PP  +++SL+L +TF++M P+L ++ + GI+P M+ 
Sbjct: 64  VMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDK 123

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
           +I+ T A ++ A PF  FM  NTREKDL+LF  + +  +  T     D +   +LIP+FM
Sbjct: 124 KISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTP----DDVSLSVLIPAFM 179

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
           ISEL+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LL
Sbjct: 180 ISELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLL 239

Query: 238 VENLVKSF 245
            ENLV SF
Sbjct: 240 TENLVASF 247


>gi|307945658|ref|ZP_07660994.1| flagellar biosynthetic protein FliP [Roseibium sp. TrichSKD4]
 gi|307771531|gb|EFO30756.1| flagellar biosynthetic protein FliP [Roseibium sp. TrichSKD4]
          Length = 231

 Score =  214 bits (546), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 106/229 (46%), Positives = 167/229 (72%), Gaps = 4/229 (1%)

Query: 17  VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
           ++A ++    +    D +++   V+   + T+LS+AP +LIMVT F R ++V S+LR+ +
Sbjct: 4   IWAANAQEITIGFGDDTTLTERAVQLLALLTVLSLAPSILIMVTSFTRIVVVLSLLRSAI 63

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G+ + PPN+V+ISLA+F+T ++M+PTL ++   G+QPL+++ I    A +R ++PF  FM
Sbjct: 64  GLQTAPPNMVMISLAMFLTAFIMAPTLQKAYNDGVQPLIDDDIEFNQAFERASDPFRQFM 123

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
            +  REKDL+LF +++     +T     + +E   L+P+FMISEL+R+FEIGFL+ LPFL
Sbjct: 124 LSQVREKDLALFQELSGRPAPDTP----EELELSTLVPAFMISELKRAFEIGFLLYLPFL 179

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IID+++A+++M+MGMMMLPP  ISLPFK+IFFVL+DGW+L+  +LVKSF
Sbjct: 180 IIDLVIASVLMSMGMMMLPPVVISLPFKLIFFVLVDGWNLVAGSLVKSF 228


>gi|308182827|ref|YP_003926954.1| flagellar biosynthesis protein FliP [Helicobacter pylori PeCan4]
 gi|308065012|gb|ADO06904.1| flagellar biosynthesis protein FliP [Helicobacter pylori PeCan4]
          Length = 248

 Score =  214 bits (545), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 111/246 (45%), Positives = 166/246 (67%), Gaps = 10/246 (4%)

Query: 6   FFALFLVTP---ELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           F  L L+ P    L+ A S+L  V   +N P+D       +    + T+L +AP L++++
Sbjct: 4   FIFLILICPLICPLMSADSALPSVNLSLNAPSDPKQLVTTLNVIALLTLLVLAPSLILVM 63

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R I+VFS LRT +G    PP  +++SL+L +TF++M P+L ++ + GI+P M+ +I
Sbjct: 64  TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKI 123

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           + T A ++ A PF  FM  NTREKDL+LF  + +  +  T     D +   +LIP+FMIS
Sbjct: 124 SYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTP----DEVSLSVLIPAFMIS 179

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LL E
Sbjct: 180 ELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTE 239

Query: 240 NLVKSF 245
           NLV SF
Sbjct: 240 NLVASF 245


>gi|217033150|ref|ZP_03438609.1| hypothetical protein HPB128_194g3 [Helicobacter pylori B128]
 gi|216945122|gb|EEC23821.1| hypothetical protein HPB128_194g3 [Helicobacter pylori B128]
          Length = 231

 Score =  214 bits (545), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 106/230 (46%), Positives = 159/230 (69%), Gaps = 7/230 (3%)

Query: 19  AKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTG 75
           A S+L  V   +N P+D       +    + T+L +AP L++++T F R I+VFS LRT 
Sbjct: 3   ADSALPSVNLSLNAPSDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTA 62

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVF 135
           +G    PP  +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ A PF  F
Sbjct: 63  LGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEF 122

Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195
           M  NTREKDL+LF  + +  +  T     D +   +LIP+FMISEL+ +F+IGFL+ LPF
Sbjct: 123 MLKNTREKDLALFFRIRNLPNPKTP----DEVSLSVLIPAFMISELKTAFQIGFLLYLPF 178

Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           L+IDM++++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LL ENLV SF
Sbjct: 179 LVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 228


>gi|317014102|gb|ADU81538.1| flagellar biosynthesis protein FliP [Helicobacter pylori
           Gambia94/24]
          Length = 248

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 111/246 (45%), Positives = 166/246 (67%), Gaps = 10/246 (4%)

Query: 6   FFALFLVTP---ELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           F  L L+ P    L+ A S+L  V   +N P+D       +    + T+L +AP L++++
Sbjct: 4   FIFLILICPLICPLMSADSTLPSVNLSLNAPSDPKQLVTTLNVIALLTLLVLAPSLILVM 63

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R I+VFS LRT +G    PP  +++SL+L +TF++M P+L ++ + GI+P M+ +I
Sbjct: 64  TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKI 123

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           + T A ++ A PF  FM  NTREKDL+LF  + +  +  T     D +   +LIP+FMIS
Sbjct: 124 SYTEAFEKSALPFKKFMLKNTREKDLALFFRIRNLPNPKTP----DDVSLSVLIPAFMIS 179

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LL E
Sbjct: 180 ELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTE 239

Query: 240 NLVKSF 245
           NLV SF
Sbjct: 240 NLVASF 245


>gi|315586640|gb|ADU41021.1| flagellar biosynthetic protein FliP [Helicobacter pylori 35A]
          Length = 248

 Score =  213 bits (543), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 112/246 (45%), Positives = 165/246 (67%), Gaps = 10/246 (4%)

Query: 6   FFALFLVTP---ELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           F  L L+ P    L+ A S+L  V   +N P D       +    + T+L +AP L++++
Sbjct: 4   FIFLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVM 63

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R I+VFS LRT +G    PP  +++SL+L +TF++M P+L ++ + GI+P M+ +I
Sbjct: 64  TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKI 123

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           + T A ++ A PF  FM  NTREKDL+LF  + +  +  T     D +   +LIP+FMIS
Sbjct: 124 SYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTP----DEVSLSVLIPAFMIS 179

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP  ISLPFKV+ F+L+DG++LL E
Sbjct: 180 ELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKVLVFILVDGFNLLTE 239

Query: 240 NLVKSF 245
           NLV SF
Sbjct: 240 NLVASF 245


>gi|298736381|ref|YP_003728907.1| flagellar biosynthesis protein FliP [Helicobacter pylori B8]
 gi|298355571|emb|CBI66443.1| flagellar biosynthesis protein (FliP) [Helicobacter pylori B8]
          Length = 260

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 109/238 (45%), Positives = 164/238 (68%), Gaps = 8/238 (3%)

Query: 11  LVTPELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67
           L+ P L+ A S+L  V   +N P+D       +    + T+L +AP L++++T F R I+
Sbjct: 25  LICP-LMSADSALPSVNLSLNAPSDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIV 83

Query: 68  VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
           VFS LRT +G    PP  +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++
Sbjct: 84  VFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEK 143

Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
            A PF  FM  NTREKDL+LF  + +  +  T     D +   +LIP+FMISEL+ +F+I
Sbjct: 144 SALPFKEFMLKNTREKDLALFFRIRNLPNPKTP----DEVSLSVLIPAFMISELKTAFQI 199

Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GFL+ LPFL+IDM++++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LL ENLV SF
Sbjct: 200 GFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 257


>gi|308184472|ref|YP_003928605.1| flagellar biosynthesis protein FliP [Helicobacter pylori SJM180]
 gi|308060392|gb|ADO02288.1| flagellar biosynthesis protein FliP [Helicobacter pylori SJM180]
          Length = 301

 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 111/246 (45%), Positives = 166/246 (67%), Gaps = 10/246 (4%)

Query: 6   FFALFLVTP---ELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           F  L L+ P    L+ A S+L  V   +N P+D       +    + T+L +AP L++++
Sbjct: 57  FIFLILICPLICPLMSADSALPSVNLSLNAPSDPKQLVTTLNVIALLTLLVLAPSLILVM 116

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R I+VFS LRT +G    PP  +++SL+L +TF++M P+L ++ + GI+P M+ +I
Sbjct: 117 TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKI 176

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           + T A ++ A PF  FM  NTREKDL+LF  + +  +  T     D +   +LIP+FMIS
Sbjct: 177 SYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTP----DEVSLSVLIPAFMIS 232

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LL E
Sbjct: 233 ELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTE 292

Query: 240 NLVKSF 245
           NLV SF
Sbjct: 293 NLVASF 298


>gi|217033687|ref|ZP_03439114.1| hypothetical protein HP9810_5g29 [Helicobacter pylori 98-10]
 gi|216943876|gb|EEC23313.1| hypothetical protein HP9810_5g29 [Helicobacter pylori 98-10]
          Length = 231

 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 106/230 (46%), Positives = 158/230 (68%), Gaps = 7/230 (3%)

Query: 19  AKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTG 75
           A S+L  V   +N P D       +    + T+L +AP L++++T F R I+VFS LRT 
Sbjct: 3   ADSTLPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTA 62

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVF 135
           +G    PP  +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ A PF  F
Sbjct: 63  LGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEF 122

Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195
           M  NTREKDL+LF  + +  +  T     D +   +LIP+FMISEL+ +F+IGFL+ LPF
Sbjct: 123 MLKNTREKDLALFFRIRNLPNPKTP----DEVSLSVLIPAFMISELKTAFQIGFLLYLPF 178

Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           L+IDM++++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LL ENLV SF
Sbjct: 179 LVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 228


>gi|312126835|ref|YP_003991709.1| flagellar biosynthetic protein flip [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776854|gb|ADQ06340.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 253

 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 105/234 (44%), Positives = 163/234 (69%), Gaps = 4/234 (1%)

Query: 12  VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
           V  E+ FA +SL+  +  P +    +  ++     TIL++AP +LIM+T F R +IV   
Sbjct: 23  VKKEIAFATASLNINLGSPQNPKDVSSALQLIIFLTILTLAPSILIMMTSFTRILIVLGF 82

Query: 72  LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
           +R  +G   +PPN ++I LALF+TF+VM+P  D+      QP +N +IT   A++R  EP
Sbjct: 83  VRNALGTQQMPPNQILIGLALFLTFFVMAPVTDKIYTQAYQPYINGRITSQEALKRAEEP 142

Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
              FM  NTR+KDL LF+ +++  + NT++     +  R+++P+F+ISEL+ +FE+GFLI
Sbjct: 143 LKEFMLKNTRKKDLDLFVKLSNV-NPNTNV---KDLPLRVVVPAFIISELKSAFEMGFLI 198

Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            +PFLIIDM+VA+I+M+MGM+M+PP  ISLPFK++ F+L+DGW+L+VE+LV+SF
Sbjct: 199 YVPFLIIDMVVASILMSMGMLMIPPVMISLPFKILLFILVDGWNLVVESLVRSF 252


>gi|108563093|ref|YP_627409.1| flagellar biosynthesis protein FliP [Helicobacter pylori HPAG1]
 gi|107836866|gb|ABF84735.1| flagellar biosynthetic protein [Helicobacter pylori HPAG1]
 gi|261839493|gb|ACX99258.1| flagellar biosynthesis protein FliP [Helicobacter pylori 52]
 gi|308062010|gb|ADO03898.1| flagellar biosynthesis protein FliP [Helicobacter pylori Cuz20]
 gi|317009302|gb|ADU79882.1| flagellar biosynthesis protein FliP [Helicobacter pylori India7]
 gi|317012496|gb|ADU83104.1| flagellar biosynthesis protein FliP [Helicobacter pylori
           Lithuania75]
 gi|317177503|dbj|BAJ55292.1| flagellar biosynthesis protein FliP [Helicobacter pylori F16]
 gi|317178956|dbj|BAJ56744.1| flagellar biosynthesis protein FliP [Helicobacter pylori F30]
 gi|317181997|dbj|BAJ59781.1| flagellar biosynthesis protein FliP [Helicobacter pylori F57]
          Length = 248

 Score =  213 bits (541), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 111/246 (45%), Positives = 165/246 (67%), Gaps = 10/246 (4%)

Query: 6   FFALFLVTP---ELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           F  L L+ P    L+ A S+L  V   +N P D       +    + T+L +AP L++++
Sbjct: 4   FIFLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVM 63

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R I+VFS LRT +G    PP  +++SL+L +TF++M P+L ++ + GI+P M+ +I
Sbjct: 64  TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKI 123

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           + T A ++ A PF  FM  NTREKDL+LF  + +  +  T     D +   +LIP+FMIS
Sbjct: 124 SYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTP----DEVSLSVLIPAFMIS 179

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LL E
Sbjct: 180 ELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTE 239

Query: 240 NLVKSF 245
           NLV SF
Sbjct: 240 NLVASF 245


>gi|308063526|gb|ADO05413.1| flagellar biosynthesis protein FliP [Helicobacter pylori Sat464]
          Length = 248

 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 109/238 (45%), Positives = 163/238 (68%), Gaps = 8/238 (3%)

Query: 11  LVTPELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67
           L+ P L+ A S+L  V   +N P D       +    + T+L +AP L++++T F R I+
Sbjct: 13  LICP-LMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIV 71

Query: 68  VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
           VFS LRT +G    PP  +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++
Sbjct: 72  VFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEK 131

Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
            A PF  FM  NTREKDL+LF  + +  +  T     D +   +LIP+FMISEL+ +F+I
Sbjct: 132 SALPFKEFMLKNTREKDLALFFRIRNLPNPKTP----DEVSLSVLIPAFMISELKTAFQI 187

Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GFL+ LPFL+IDM++++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LL ENLV SF
Sbjct: 188 GFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 245


>gi|188527470|ref|YP_001910157.1| flagellar biosynthesis protein FliP [Helicobacter pylori Shi470]
 gi|188143710|gb|ACD48127.1| flagellar biosynthesis protein FliP [Helicobacter pylori Shi470]
          Length = 248

 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 109/238 (45%), Positives = 163/238 (68%), Gaps = 8/238 (3%)

Query: 11  LVTPELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67
           L+ P L+ A S+L  V   +N P D       +    + T+L +AP L++++T F R I+
Sbjct: 13  LICP-LMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIV 71

Query: 68  VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
           VFS LRT +G    PP  +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++
Sbjct: 72  VFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEK 131

Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
            A PF  FM  NTREKDL+LF  + +  +  T     D +   +LIP+FMISEL+ +F+I
Sbjct: 132 SALPFKEFMLKNTREKDLALFFRIRNLPNPKTP----DEVSLSVLIPAFMISELKTAFQI 187

Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GFL+ LPFL+IDM++++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LL ENLV SF
Sbjct: 188 GFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 245


>gi|254779331|ref|YP_003057436.1| flagellar biosynthesis protein FliP [Helicobacter pylori B38]
 gi|254001242|emb|CAX29217.1| Flagellar biosynthetic protein FliP [Helicobacter pylori B38]
          Length = 248

 Score =  212 bits (540), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 109/238 (45%), Positives = 163/238 (68%), Gaps = 8/238 (3%)

Query: 11  LVTPELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67
           L+ P L+ A S+L  V   +N P D       +    + T+L +AP L++++T F R I+
Sbjct: 13  LICP-LMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIV 71

Query: 68  VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
           VFS LRT +G    PP  +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++
Sbjct: 72  VFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEK 131

Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
            A PF  FM  NTREKDL+LF  + +  +  T     D +   +LIP+FMISEL+ +F+I
Sbjct: 132 SALPFKEFMLKNTREKDLALFFRIRNLPNPKTP----DEVSLSVLIPAFMISELKTAFQI 187

Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GFL+ LPFL+IDM++++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LL ENLV SF
Sbjct: 188 GFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 245


>gi|317010902|gb|ADU84649.1| flagellar biosynthesis protein FliP [Helicobacter pylori
           SouthAfrica7]
          Length = 248

 Score =  212 bits (540), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 109/242 (45%), Positives = 164/242 (67%), Gaps = 7/242 (2%)

Query: 7   FALFLVTPELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
           F +F +   L+ A S+L  V   +N P D       +    + T+L +AP L++++T F 
Sbjct: 8   FLIFALIGPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFI 67

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
           R I+VFS LRT +G    PP  +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T 
Sbjct: 68  RLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTE 127

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
           A ++ A PF  FM  NTREKDL+LF  + +  +  T     D +   +LIP+FMISEL+ 
Sbjct: 128 AFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTP----DDVSLSVLIPAFMISELKT 183

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
           +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LL ENLV 
Sbjct: 184 AFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVA 243

Query: 244 SF 245
           SF
Sbjct: 244 SF 245


>gi|210134891|ref|YP_002301330.1| flagellar biosynthesis protein FliP [Helicobacter pylori P12]
 gi|210132859|gb|ACJ07850.1| flagellar biosynthetic protein [Helicobacter pylori P12]
          Length = 260

 Score =  212 bits (540), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 111/246 (45%), Positives = 165/246 (67%), Gaps = 10/246 (4%)

Query: 6   FFALFLVTP---ELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           F  L L+ P    L+ A S+L  V   +N P D       +    + T+L +AP L++++
Sbjct: 16  FIFLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVM 75

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R I+VFS LRT +G    PP  +++SL+L +TF++M P+L ++ + GI+P M+ +I
Sbjct: 76  TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKI 135

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           + T A ++ A PF  FM  NTREKDL+LF  + +  +  T     D +   +LIP+FMIS
Sbjct: 136 SYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTP----DEVSLSVLIPAFMIS 191

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LL E
Sbjct: 192 ELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTE 251

Query: 240 NLVKSF 245
           NLV SF
Sbjct: 252 NLVASF 257


>gi|208434601|ref|YP_002266267.1| flagellar biosynthetic protein [Helicobacter pylori G27]
 gi|208432530|gb|ACI27401.1| flagellar biosynthetic protein [Helicobacter pylori G27]
          Length = 260

 Score =  212 bits (540), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 109/238 (45%), Positives = 163/238 (68%), Gaps = 8/238 (3%)

Query: 11  LVTPELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67
           L+ P L+ A S+L  V   +N P D       +    + T+L +AP L++++T F R I+
Sbjct: 25  LICP-LMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIV 83

Query: 68  VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
           VFS LRT +G    PP  +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++
Sbjct: 84  VFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEK 143

Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
            A PF  FM  NTREKDL+LF  + +  +  T     D +   +LIP+FMISEL+ +F+I
Sbjct: 144 SALPFKEFMLKNTREKDLALFFRIRNLPNPKTP----DEVSLSVLIPAFMISELKTAFQI 199

Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GFL+ LPFL+IDM++++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LL ENLV SF
Sbjct: 200 GFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 257


>gi|109947417|ref|YP_664645.1| flagellar biosynthesis protein FliP [Helicobacter acinonychis str.
           Sheeba]
 gi|109714638|emb|CAJ99646.1| flagellar biosynthesis protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 248

 Score =  212 bits (540), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 103/224 (45%), Positives = 156/224 (69%), Gaps = 4/224 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           S++  +N P D       +    + T+L +AP L++++T F R I+VFS LRT +G    
Sbjct: 26  SVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQT 85

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PP  +++SL+L +TF++M P+L ++ ++GI+P M+ +I+ T A ++ A PF  FM  NTR
Sbjct: 86  PPTQILVSLSLILTFFIMEPSLKKAYDIGIKPYMDKKISYTEAFEKSALPFKEFMLKNTR 145

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           EKDL+LF  +    +  T     D +   +LIP+FMISEL+ +F+IGFL+ LPFL+IDM+
Sbjct: 146 EKDLALFFRIRQLPNPKTP----DDVSLSVLIPAFMISELKTAFQIGFLLYLPFLVIDMV 201

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LL ENLV SF
Sbjct: 202 ISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 245


>gi|312621584|ref|YP_004023197.1| flagellar biosynthetic protein flip [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202051|gb|ADQ45378.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 252

 Score =  212 bits (539), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 104/231 (45%), Positives = 163/231 (70%), Gaps = 4/231 (1%)

Query: 15  ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74
           E+ FA +SL+  +  P + +  +  ++     TIL++AP +LIM+T F R +IV   +R 
Sbjct: 25  EIAFATASLNINLGNPQNPNDVSSALQLIIFLTILTLAPSILIMMTSFTRILIVLGFIRN 84

Query: 75  GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134
            +G   +PPN ++I LALF+TF+VM+P  D+      QP +N +IT   A++R  EP   
Sbjct: 85  ALGTQQMPPNQILIGLALFLTFFVMAPVTDKIYTQAYQPYINGRITSQEALKRAEEPLKE 144

Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
           FM  NTR+KDL LF+ +++  + NT++     +  R+++P+F+ISEL+ +FE+GFLI +P
Sbjct: 145 FMLKNTRKKDLDLFVKLSNV-NPNTNV---KDLPLRVVVPAFIISELKSAFEMGFLIYVP 200

Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           FLIIDM+VA+I+M+MGM+M+PP  ISLPFK++ F+L+DGW+L+VE+LV+SF
Sbjct: 201 FLIIDMVVASILMSMGMLMIPPVMISLPFKILLFILVDGWNLVVESLVRSF 251


>gi|207092164|ref|ZP_03239951.1| flagellar biosynthesis protein FliP [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 266

 Score =  212 bits (539), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 111/246 (45%), Positives = 165/246 (67%), Gaps = 10/246 (4%)

Query: 6   FFALFLVTP---ELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           F  L L+ P    L+ A S+L  V   +N P D       +    + T+L +AP L++++
Sbjct: 22  FIFLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVM 81

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R I+VFS LRT +G    PP  +++SL+L +TF++M P+L ++ + GI+P M+ +I
Sbjct: 82  TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKI 141

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           + T A ++ A PF  FM  NTREKDL+LF  + +  +  T     D +   +LIP+FMIS
Sbjct: 142 SYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTP----DEVSLSVLIPAFMIS 197

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LL E
Sbjct: 198 ELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTE 257

Query: 240 NLVKSF 245
           NLV SF
Sbjct: 258 NLVASF 263


>gi|83858799|ref|ZP_00952321.1| flagellar biosynthesis protein FliP [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853622|gb|EAP91474.1| flagellar biosynthesis protein FliP [Oceanicaulis alexandrii
           HTCC2633]
          Length = 258

 Score =  212 bits (539), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 101/214 (47%), Positives = 154/214 (71%), Gaps = 5/214 (2%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D +++  +++   + T+LS+AP +LIM T F R ++V S+LRT MG+   PPN V+ISL+
Sbjct: 43  DTALTERVLQMIALLTVLSLAPSILIMTTSFIRIVVVLSLLRTAMGLQQSPPNAVLISLS 102

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           LF+T ++M+P   ++ + G++PL++ Q++   A    A+P   FM  +TRE+DL LF+++
Sbjct: 103 LFLTAFIMAPVFTQAYQDGVEPLLSGQLSNQEAFSAAAQPVKTFMLAHTREEDLGLFLNI 162

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           +         T        ++ P+FMISELRR+FEIGFL+ +PFLIID++VA+I+M+MGM
Sbjct: 163 SGEEPETAQDTP-----VHVVAPAFMISELRRAFEIGFLLFIPFLIIDLVVASILMSMGM 217

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMLPP  ISLPFK+IFFVL+DGWSL++ +LV+SF
Sbjct: 218 MMLPPVIISLPFKLIFFVLVDGWSLVIGSLVQSF 251


>gi|317180434|dbj|BAJ58220.1| flagellar biosynthesis protein FliP [Helicobacter pylori F32]
          Length = 248

 Score =  211 bits (538), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 111/246 (45%), Positives = 164/246 (66%), Gaps = 10/246 (4%)

Query: 6   FFALFLVTP---ELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           F  L L+ P    L+ A S+L  V   +N P D       +    + T+L +AP L++++
Sbjct: 4   FIFLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVM 63

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R I+VFS LRT +G    PP  +++SL+L +TF++M P+L ++ + GI+P M+  I
Sbjct: 64  TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKTI 123

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           + T A ++ A PF  FM  NTREKDL+LF  + +  +  T     D +   +LIP+FMIS
Sbjct: 124 SYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTP----DEVSLSVLIPAFMIS 179

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LL E
Sbjct: 180 ELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTE 239

Query: 240 NLVKSF 245
           NLV SF
Sbjct: 240 NLVASF 245


>gi|15611692|ref|NP_223343.1| flagellar biosynthesis protein FliP [Helicobacter pylori J99]
 gi|4155178|gb|AAD06205.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
          Length = 248

 Score =  211 bits (538), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 110/246 (44%), Positives = 165/246 (67%), Gaps = 10/246 (4%)

Query: 6   FFALFLVTP---ELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           F  L L+ P    L+ A S+L  V   +N P+D       +    + T+L +AP L++++
Sbjct: 4   FIFLILICPLICPLMSADSALPSVNLSLNAPSDPKQLVTTLNVIALLTLLVLAPSLILVM 63

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R I+VFS LRT +G    PP  +++SL+L +TF++M P+L ++ + GI+P M+ +I
Sbjct: 64  TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKI 123

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           + T A ++   PF  FM  NTREKDL+LF  + +  +  T     D +   +LIP+FMIS
Sbjct: 124 SYTEAFEKSTLPFKEFMLKNTREKDLALFFRIRNLPNPKTP----DDVSLSVLIPAFMIS 179

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LL E
Sbjct: 180 ELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTE 239

Query: 240 NLVKSF 245
           NLV SF
Sbjct: 240 NLVASF 245


>gi|297379879|gb|ADI34766.1| flagellar biosynthetic protein FliP [Helicobacter pylori v225d]
          Length = 248

 Score =  211 bits (537), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 110/246 (44%), Positives = 165/246 (67%), Gaps = 10/246 (4%)

Query: 6   FFALFLVTP---ELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           F  L L+ P    L+ A S+L  V   +N P D       +    + T+L +AP L++++
Sbjct: 4   FIFLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVM 63

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R I+VFS LRT +G    PP  +++SL+L +TF++M P+L ++ + GI+P ++ +I
Sbjct: 64  TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYVDKKI 123

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           + T A ++ A PF  FM  NTREKDL+LF  + +  +  T     D +   +LIP+FMIS
Sbjct: 124 SYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTP----DEVSLSVLIPAFMIS 179

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LL E
Sbjct: 180 ELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTE 239

Query: 240 NLVKSF 245
           NLV SF
Sbjct: 240 NLVASF 245


>gi|312876513|ref|ZP_07736496.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796724|gb|EFR13070.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 252

 Score =  211 bits (537), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 103/231 (44%), Positives = 162/231 (70%), Gaps = 4/231 (1%)

Query: 15  ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74
           E+ FA +S++  +  P +    +  ++     TIL++AP +LIM+T F R +IV   +R 
Sbjct: 25  EIAFASASININLGSPQNPKDVSSALQLIIFLTILTLAPSILIMMTSFTRILIVLGFVRN 84

Query: 75  GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134
            +G   +PPN ++I LALF+TF+VM+P  D+      QP +N +IT   A++R  EP   
Sbjct: 85  ALGTQQMPPNQILIGLALFLTFFVMAPVTDKIYTQAYQPYINGRITSQEALKRAEEPLKE 144

Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
           FM  NTR+KDL LF+ +++  + NT++     +  R+++P+F+ISEL+ +FE+GFLI +P
Sbjct: 145 FMLKNTRKKDLDLFVKLSNV-NPNTNV---KDLPLRVVVPAFIISELKSAFEMGFLIYVP 200

Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           FLIIDM+VA+I+M+MGM+M+PP  ISLPFK++ F+L+DGW+L+VE+LV+SF
Sbjct: 201 FLIIDMVVASILMSMGMLMIPPVMISLPFKILLFILVDGWNLVVESLVRSF 251


>gi|332673532|gb|AEE70349.1| flagellar biosynthetic protein FliP [Helicobacter pylori 83]
          Length = 248

 Score =  211 bits (536), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 110/246 (44%), Positives = 164/246 (66%), Gaps = 10/246 (4%)

Query: 6   FFALFLVTP---ELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           F  L L+ P    L+ A S+L  V   +N P D       +    + T+L +AP L++++
Sbjct: 4   FIFLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVM 63

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R I+VFS LRT +G    PP  +++SL+L +TF++M P+L ++ + GI+P M+ +I
Sbjct: 64  TSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKI 123

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           + T A ++   PF  FM  NTREKDL+LF  + +  +  T     D +   +LIP+FMIS
Sbjct: 124 SYTEAFEKSTLPFKEFMLKNTREKDLALFFRIRNLPNPKTP----DEVSLSVLIPAFMIS 179

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LL E
Sbjct: 180 ELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTE 239

Query: 240 NLVKSF 245
           NLV SF
Sbjct: 240 NLVASF 245


>gi|167645329|ref|YP_001682992.1| flagellar biosynthesis protein FliP [Caulobacter sp. K31]
 gi|167347759|gb|ABZ70494.1| flagellar biosynthetic protein FliP [Caulobacter sp. K31]
          Length = 266

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 103/232 (44%), Positives = 159/232 (68%), Gaps = 6/232 (2%)

Query: 14  PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73
           P +  A+S+++  +++     +S  +V+  G+ T+LS+AP ++IM T F R ++V  +LR
Sbjct: 34  PAVAVAQSAIN--VDLGTGAGLSERVVQMVGLLTVLSLAPSIVIMTTSFVRIVVVLGLLR 91

Query: 74  TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133
           T +G+   PPN VIISLALF+T  VM PT ++S + GI+PL++ QI    A    A P  
Sbjct: 92  TAIGVQQSPPNPVIISLALFLTAIVMGPTFEKSYDDGIKPLLDKQIEMPEAFDAAAAPVK 151

Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
           VFM     + DL+LF+ ++      T +        +++ P+FMISEL+R+FEIGFL+ +
Sbjct: 152 VFMLRQVDQDDLALFIRLSKIEKPKTAV----DTPLKVVTPAFMISELKRAFEIGFLLFI 207

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           PFL+ID++VA+++M+MGMMMLPP ++SLPFK+IFFVL+DGW L+  +LV+SF
Sbjct: 208 PFLVIDLVVASVLMSMGMMMLPPATVSLPFKLIFFVLVDGWRLVAGSLVESF 259


>gi|209963528|ref|YP_002296443.1| flagellar biosynthesis protein FliP [Rhodospirillum centenum SW]
 gi|209956994|gb|ACI97630.1| flagellar biosynthesis protein FliP [Rhodospirillum centenum SW]
          Length = 267

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 111/231 (48%), Positives = 150/231 (64%), Gaps = 12/231 (5%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
           M    D S +  +V+   + TILS+AP LL+MVT F R ++V S+LR+ +G+   PPN+V
Sbjct: 33  MGGTGDASFAGRMVQVVALVTILSVAPGLLVMVTSFTRIVVVLSLLRSALGLQQTPPNMV 92

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           ++ LAL +T YVM PTLDRS   G+QP+++ QITE  A +R+ EPF  FM+ + R KDL 
Sbjct: 93  LLGLALLLTAYVMGPTLDRSWREGVQPMVDGQITEEQAFERIVEPFRDFMQAHVRPKDLE 152

Query: 147 LFMDMAHSSHRNTDI------------TKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
           LF      +                          R LI +F+ISELRR+FEIGFL+ LP
Sbjct: 153 LFRSFEAGTKSGAAPAAGSAGPAPSTEEAASAPGLRTLIAAFVISELRRAFEIGFLLFLP 212

Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           FL+IDMI+A ++MAMGMMMLPP  ISLPFK+IFFV++DGW L+   LV+S+
Sbjct: 213 FLVIDMIIAAVLMAMGMMMLPPVIISLPFKIIFFVMVDGWLLVAGALVRSY 263


>gi|261838080|gb|ACX97846.1| flagellar biosynthetic protein [Helicobacter pylori 51]
          Length = 252

 Score =  209 bits (533), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 102/224 (45%), Positives = 156/224 (69%), Gaps = 4/224 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           S++  +N P D       +    + T+L +AP L++++T F R I+VFS LRT +G    
Sbjct: 30  SVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQT 89

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PP  +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ A PF  FM  NTR
Sbjct: 90  PPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLKNTR 149

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           EKDL+LF  + +  +  T     + +   +LIP+FMISEL+ +F+IGFL+ LPFL+IDM+
Sbjct: 150 EKDLALFFRIRNLPNPKTP----NEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVIDMV 205

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LL ENLV SF
Sbjct: 206 ISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 249


>gi|283954390|ref|ZP_06371910.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283794007|gb|EFC32756.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 233

 Score =  209 bits (531), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 103/202 (50%), Positives = 147/202 (72%), Gaps = 4/202 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + TIL++AP ++ ++T F R I+VFS LR  MG  S+PPN ++++LAL +TF++M P   
Sbjct: 35  VLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVAT 94

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +S   GI+P +  QI    A  + A+PF  FM  NTREKDL+LF  + +  +  T     
Sbjct: 95  KSYNEGIKPYLAEQIGYEEAFVKGAKPFKDFMLKNTREKDLALFYRIRNLPNPKTI---- 150

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D +   +L+P+FMISEL+ +FEIGFLI LPFL+IDM+V++++MAMGMMMLPPT ISLPFK
Sbjct: 151 DDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPTMISLPFK 210

Query: 225 VIFFVLIDGWSLLVENLVKSFI 246
           ++ FVL+DGW+LLV+ LV+SF+
Sbjct: 211 LLIFVLVDGWNLLVQRLVESFV 232


>gi|94314220|ref|YP_587429.1| flagellar biosynthesis protein FliP [Cupriavidus metallidurans
           CH34]
 gi|93358072|gb|ABF12160.1| flagellar biosynthesis protein FliP [Cupriavidus metallidurans
           CH34]
          Length = 264

 Score =  209 bits (531), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 106/235 (45%), Positives = 154/235 (65%), Gaps = 7/235 (2%)

Query: 14  PELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
           PE   A+S L  V + P      TW   ++T  + T LS  P  ++M+T F R IIV  +
Sbjct: 34  PESALAQS-LPGVTSRPGPGGGQTWSLSIQTLVLLTSLSFLPAAMLMMTGFTRIIIVLGL 92

Query: 72  LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
           LR  +G  S PPN V++ L+LF+TF+VMSP  D+      QPL  N+I+  TA QR A P
Sbjct: 93  LRNALGTASSPPNQVLVGLSLFLTFFVMSPVFDKVYTDAYQPLSENKISLETAAQRAAVP 152

Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
              FM   TREKDL++F  MA    +  ++   + + + +L+P+F+ SEL+ +F+IGF I
Sbjct: 153 LRAFMLRQTREKDLAMFAQMA----KTPELQGPEDVPFTVLVPAFVTSELKTAFQIGFTI 208

Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
            +PFLIID++VA+++MAMGMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF+
Sbjct: 209 FIPFLIIDLVVASVLMAMGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSFM 263


>gi|16125203|ref|NP_419767.1| flagellar biosynthesis protein FliP [Caulobacter crescentus CB15]
 gi|221233939|ref|YP_002516375.1| flagellar biosynthesis protein FliP [Caulobacter crescentus NA1000]
 gi|2494562|sp|Q45980|FLIP_CAUCR RecName: Full=Flagellar biosynthetic protein fliP
 gi|841253|gb|AAA86882.1| FliP [Caulobacter crescentus CB15]
 gi|13422227|gb|AAK22935.1| flagellar biosynthesis protein FliP [Caulobacter crescentus CB15]
 gi|220963111|gb|ACL94467.1| flagellar biosyntheis protein FliP [Caulobacter crescentus NA1000]
          Length = 266

 Score =  208 bits (530), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 103/234 (44%), Positives = 159/234 (67%), Gaps = 6/234 (2%)

Query: 12  VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
           + P    A+S+++  +N+     ++  +V+  G+ T+LS+AP ++IM T F R ++V  +
Sbjct: 33  IMPAAAMAQSAVN--INLGTGAGLTERVVQLVGLMTVLSLAPSIVIMTTSFVRIVVVLGL 90

Query: 72  LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
           LRT +G+   PPN V+ISLALF+T  VM+PT +RS + GI+PL++ Q+    A +  + P
Sbjct: 91  LRTAIGVQQSPPNPVLISLALFLTAIVMAPTFERSYDAGIKPLLDQQMELPEAFEAASGP 150

Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
              FM +     DL+LF+ ++      T          R++ P+FMISEL+R+FEIGFL+
Sbjct: 151 VKQFMLSQVDRDDLALFVRLSKIPQPRT----AAETPLRVVTPAFMISELKRAFEIGFLL 206

Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            +PFL+ID++VA+++M+MGMMMLPP SISLPFK+IFFVL+DGW L+  +LV+SF
Sbjct: 207 FIPFLVIDLVVASVLMSMGMMMLPPASISLPFKLIFFVLVDGWRLVAGSLVESF 260


>gi|222530123|ref|YP_002574005.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222456970|gb|ACM61232.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 252

 Score =  208 bits (529), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 108/236 (45%), Positives = 167/236 (70%), Gaps = 14/236 (5%)

Query: 15  ELVFAKSSLH----DVMNIPADLSISTWIVRTFGIF-TILSIAPILLIMVTCFPRFIIVF 69
           E+ FA +SL+    +  N P D+S +  ++    IF TIL++AP +LIM+T F R +IV 
Sbjct: 25  EIAFAAASLNINLGNSQN-PNDVSSALQLI----IFLTILTLAPSILIMMTSFTRILIVL 79

Query: 70  SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129
             +R  +G   +PPN ++I LALF+TF+VM+P  D+      QP +N +IT   A++R  
Sbjct: 80  GFIRNALGTQQMPPNQILIGLALFLTFFVMAPVTDKIYIQAYQPYINGRITSQEALKRAE 139

Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189
           EP   FM  NTR+KDL LF+ +++  + NT++     +  R+++P+F+ISEL+ +FE+GF
Sbjct: 140 EPLKEFMLKNTRKKDLDLFVKLSNV-NPNTNV---KDLPLRVVVPAFIISELKSAFEMGF 195

Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LI +PFLIIDM+VA+I+M+MGM+M+PP  ISLPFK++ F+L+DGW+L++E+LV+SF
Sbjct: 196 LIYVPFLIIDMVVASILMSMGMLMIPPVMISLPFKILLFILVDGWNLVIESLVRSF 251


>gi|295706270|ref|YP_003599345.1| flagellar biosynthetic protein FliP [Bacillus megaterium DSM 319]
 gi|294803929|gb|ADF40995.1| flagellar biosynthetic protein FliP [Bacillus megaterium DSM 319]
          Length = 222

 Score =  208 bits (529), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 104/231 (45%), Positives = 162/231 (70%), Gaps = 18/231 (7%)

Query: 23  LHDVMNI-----PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMG 77
           +++VMN+     P ++S S   V+   + T+ S+AP +LIM+TCF R +IV S +RT +G
Sbjct: 1   MNEVMNLFNSSSPTNISTS---VQLLLLLTVFSVAPGILIMMTCFTRIVIVLSFVRTSLG 57

Query: 78  MGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMR 137
              +PPN +++ L+LF+TF++M+PT  +  E  +QPL+  +IT   A ++ AEP   FM 
Sbjct: 58  TQQMPPNQILVGLSLFLTFFIMAPTFSQVNEQALQPLLKEKITLNQAYEKAAEPMKEFMS 117

Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIE---YRILIPSFMISELRRSFEIGFLIILP 194
            +TR+KDL+LF++ A       DI K   ++      L+P++ ISEL+ +F+IGF+I +P
Sbjct: 118 AHTRQKDLALFLEYA-------DIDKPSSVQDIPLTALVPAYAISELKTAFQIGFMIFIP 170

Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           FLIIDMI+A+++M+MGMMMLPP  ISLPFK++ FVL+DGW+L+V++L+ SF
Sbjct: 171 FLIIDMIIASVLMSMGMMMLPPVMISLPFKILLFVLVDGWNLVVKSLLISF 221


>gi|209545574|ref|YP_002277803.1| flagellar biosynthesis protein FliP [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533251|gb|ACI53188.1| flagellar biosynthetic protein FliP [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 266

 Score =  208 bits (529), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 101/232 (43%), Positives = 152/232 (65%), Gaps = 4/232 (1%)

Query: 14  PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73
           P L  A+S   D+     D   ++ +V+   + TILS+AP LL+MVT F R I+V S+LR
Sbjct: 37  PTLAHAQSLSLDLGKGMGDAGTTSRLVQLTALITILSLAPSLLVMVTAFTRIIVVLSLLR 96

Query: 74  TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133
             +G    PPN V+I LALF+TF+VM P   +S + GI P+M+ +++E   +   AEPF 
Sbjct: 97  GAIGAQGAPPNTVLIGLALFLTFFVMQPVFQQSWDHGIVPMMDGRVSEMEGLTAAAEPFR 156

Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
            FM  N R  D++ F+ +A+               +R+++P+FMI EL R FE+GFL+ L
Sbjct: 157 TFMLANARPADITTFLHLANVPP----PATPAETPWRVIMPAFMIGELSRGFEMGFLLYL 212

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           PFL+ID++ ++++M++GMMMLPP +ISLPFK+IFFV++DGW ++   LV+SF
Sbjct: 213 PFLVIDIVTSSVLMSLGMMMLPPATISLPFKLIFFVMVDGWQMVAGGLVRSF 264


>gi|57242347|ref|ZP_00370286.1| flagellar biosynthetic protein FliP [Campylobacter upsaliensis
           RM3195]
 gi|57017027|gb|EAL53809.1| flagellar biosynthetic protein FliP [Campylobacter upsaliensis
           RM3195]
          Length = 244

 Score =  207 bits (528), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 102/202 (50%), Positives = 147/202 (72%), Gaps = 4/202 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + TIL++AP ++ ++T F R IIVFS LR  MG  S+PPN +++++AL +TF++M P   
Sbjct: 46  VLTILALAPSIIFIMTSFLRLIIVFSFLRQAMGTQSMPPNTILVTMALILTFFIMEPVAT 105

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +S   G++P ++ QI    A  R A+PF  FM  NTREKDL+LF  + +  +  T     
Sbjct: 106 KSYNEGVKPYLSEQIGYEEAFVRGAKPFKDFMLKNTREKDLALFYRIRNLPNPKTI---- 161

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D +   +L+P+FMISEL+ +FEIGFLI LPFL+IDM+V++++MAMGMMMLPP  ISLPFK
Sbjct: 162 DDVPLSVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPVMISLPFK 221

Query: 225 VIFFVLIDGWSLLVENLVKSFI 246
           ++ FVL+DGW+LLV+ LV+SF+
Sbjct: 222 LLIFVLVDGWNLLVQRLVESFV 243


>gi|86152107|ref|ZP_01070319.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|85840892|gb|EAQ58142.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
           jejuni 260.94]
          Length = 244

 Score =  207 bits (528), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 102/202 (50%), Positives = 147/202 (72%), Gaps = 4/202 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + TIL++AP ++ ++T F R I+VFS LR  MG  S+PPN ++++LAL +TF++M P   
Sbjct: 46  VLTILALAPSIVFVITSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVAT 105

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +S   GI+P +  +I    A  + A+PF  FM  NTREKDL+LF  + +  +  T     
Sbjct: 106 KSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNTREKDLALFYRIRNLPNPKTI---- 161

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D +   +L+P+FMISEL+ +FEIGFLI LPFL+IDM+V++++MAMGMMMLPPT ISLPFK
Sbjct: 162 DDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPTMISLPFK 221

Query: 225 VIFFVLIDGWSLLVENLVKSFI 246
           ++ FVL+DGW+LLV+ LV+SF+
Sbjct: 222 LLIFVLVDGWNLLVQRLVESFV 243


>gi|162147465|ref|YP_001601926.1| flagellar biosynthesis protein FliP [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786042|emb|CAP55624.1| putative flagellar biosynthetic protein fliP [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 259

 Score =  207 bits (528), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 101/232 (43%), Positives = 152/232 (65%), Gaps = 4/232 (1%)

Query: 14  PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73
           P L  A+S   D+     D   ++ +V+   + TILS+AP LL+MVT F R I+V S+LR
Sbjct: 30  PTLAHAQSLSLDLGKGMGDAGTTSRLVQLTALITILSLAPSLLVMVTAFTRIIVVLSLLR 89

Query: 74  TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133
             +G    PPN V+I LALF+TF+VM P   +S + GI P+M+ +++E   +   AEPF 
Sbjct: 90  GAIGAQGAPPNTVLIGLALFLTFFVMQPVFQQSWDHGIVPMMDGRVSEMEGLTAAAEPFR 149

Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
            FM  N R  D++ F+ +A+               +R+++P+FMI EL R FE+GFL+ L
Sbjct: 150 TFMLANARPADITTFLHLANVPP----PATPAETPWRVIMPAFMIGELSRGFEMGFLLYL 205

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           PFL+ID++ ++++M++GMMMLPP +ISLPFK+IFFV++DGW ++   LV+SF
Sbjct: 206 PFLVIDIVTSSVLMSLGMMMLPPATISLPFKLIFFVMVDGWQMVAGGLVRSF 257


>gi|121612246|ref|YP_001000505.1| flagellar biosynthesis protein FliP [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|30721657|gb|AAP34259.1| FliP [Campylobacter jejuni subsp. jejuni 81-176]
 gi|87249412|gb|EAQ72372.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 244

 Score =  207 bits (528), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 102/202 (50%), Positives = 148/202 (73%), Gaps = 4/202 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + TIL++AP ++ ++T F R I+VFS LR  MG  S+PPN ++++LAL +TF++M P   
Sbjct: 46  VLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVAT 105

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +S   GI+P ++ +I    A  + A+PF  FM  NTREKDL+LF  + +  +  T     
Sbjct: 106 KSYNEGIKPYLSEKIGYEEAFIKGAKPFKDFMLKNTREKDLALFYRIRNLPNPKTI---- 161

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D +   +L+P+FMISEL+ +FEIGFLI LPFL+IDM+V++++MAMGMMMLPPT ISLPFK
Sbjct: 162 DDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPTMISLPFK 221

Query: 225 VIFFVLIDGWSLLVENLVKSFI 246
           ++ FVL+DGW+LLV+ LV+SF+
Sbjct: 222 LLIFVLVDGWNLLVQRLVESFV 243


>gi|258404717|ref|YP_003197459.1| flagellar biosynthetic protein FliP [Desulfohalobium retbaense DSM
           5692]
 gi|257796944|gb|ACV67881.1| flagellar biosynthetic protein FliP [Desulfohalobium retbaense DSM
           5692]
          Length = 252

 Score =  207 bits (528), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 98/201 (48%), Positives = 145/201 (72%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T+LS+AP +L+M T F R +IV S +R  MG+  +PPN VII LALF+TF++MSP L 
Sbjct: 55  LLTVLSLAPAILLMTTSFIRIVIVLSFIRQAMGVRQMPPNQVIIGLALFLTFFIMSPVLS 114

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +  +  +QP ++ +I +  AI+R   P   FM N  R+KDL LF+D++ S    T     
Sbjct: 115 QMNQDALQPYLDQEIGDAQAIERAVSPMREFMFNQVRQKDLQLFVDISGSDQPET----R 170

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           + I   +L+P+FM+SE++R+F+IGFLI +PFL+IDM+ A+++M+MGM+MLPP  ISLPFK
Sbjct: 171 EEIRTMLLVPAFMLSEIKRAFQIGFLIFVPFLVIDMVTASVLMSMGMLMLPPVIISLPFK 230

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW L+V +LV+SF
Sbjct: 231 ILLFVLVDGWHLVVGSLVRSF 251


>gi|295690701|ref|YP_003594394.1| flagellar biosynthetic protein FliP [Caulobacter segnis ATCC 21756]
 gi|295432604|gb|ADG11776.1| flagellar biosynthetic protein FliP [Caulobacter segnis ATCC 21756]
          Length = 265

 Score =  207 bits (527), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 104/234 (44%), Positives = 158/234 (67%), Gaps = 6/234 (2%)

Query: 12  VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
           V P    A+S+++  +N+     ++  +V+   + T+LS+AP ++IM T F R ++V  +
Sbjct: 32  VMPAAAMAQSAVN--INLGTGAGLTDRVVQLVALMTVLSLAPSIVIMTTSFVRIVVVLGL 89

Query: 72  LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
           LRT +G+ S PPN VIISLALF+T  VM PT +RS + GI+PL++ QI    A    + P
Sbjct: 90  LRTAIGVQSSPPNPVIISLALFLTAIVMGPTFERSYDAGIKPLLDKQIELPEAFDAASGP 149

Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
              FM +     DL+LF+ ++      T     +    +++ P+FMISEL+R+FEIGFL+
Sbjct: 150 VKQFMLSQVDRDDLALFVRLSKIPQPKT----AEDTPIKVVTPAFMISELKRAFEIGFLL 205

Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            +PFL+ID++VA+++M+MGMMMLPP +ISLPFK+IFFVL+DGW L+  +LV+SF
Sbjct: 206 FIPFLVIDLVVASVLMSMGMMMLPPATISLPFKLIFFVLVDGWRLVAGSLVESF 259


>gi|222823982|ref|YP_002575556.1| flagellar biosynthesis protein FliP [Campylobacter lari RM2100]
 gi|222539204|gb|ACM64305.1| flagellar biosynthesis protein FliP [Campylobacter lari RM2100]
          Length = 244

 Score =  207 bits (527), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 100/203 (49%), Positives = 148/203 (72%), Gaps = 6/203 (2%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + TIL++AP ++ ++T F R ++VFS LRT +G  ++PPN ++++LAL +TF++M P   
Sbjct: 46  VLTILALAPTIVFVMTSFLRLVVVFSFLRTALGTQTMPPNTILVTLALILTFFIMEPVAT 105

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +S   GI+P +  QI    A  +  +PF  FM  NTREKDL+LF  +     RN +  K 
Sbjct: 106 KSYNEGIKPYIAEQIGYEEAFAKGVKPFKDFMLKNTREKDLALFYRI-----RNLENPKT 160

Query: 165 -DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
            D +   +L+P+FMISEL+ +FEIGFL+ LPFL+IDM+V++++MAMGMMMLPP  IS+PF
Sbjct: 161 IDDVPLTVLVPAFMISELKTAFEIGFLLFLPFLVIDMVVSSVLMAMGMMMLPPVMISMPF 220

Query: 224 KVIFFVLIDGWSLLVENLVKSFI 246
           K++ FVL+DGW+LL++NLVKSF+
Sbjct: 221 KLLIFVLVDGWNLLIQNLVKSFL 243


>gi|57237661|ref|YP_178909.1| flagellar biosynthesis protein FliP [Campylobacter jejuni RM1221]
 gi|86150212|ref|ZP_01068439.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|86153364|ref|ZP_01071568.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|88597515|ref|ZP_01100749.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|157415087|ref|YP_001482343.1| flagellar biosynthesis protein FliP [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|218562448|ref|YP_002344227.1| flagellar biosynthesis protein FliP [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|57166465|gb|AAW35244.1| flagellar biosynthetic protein FliP [Campylobacter jejuni RM1221]
 gi|85839328|gb|EAQ56590.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|85843090|gb|EAQ60301.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|88190107|gb|EAQ94082.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112360154|emb|CAL34948.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|157386051|gb|ABV52366.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|284926065|gb|ADC28417.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|307747729|gb|ADN90999.1| Flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315058270|gb|ADT72599.1| Flagellar biosynthesis protein fliP [Campylobacter jejuni subsp.
           jejuni S3]
 gi|315930473|gb|EFV09528.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
           jejuni 305]
 gi|315931173|gb|EFV10146.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 244

 Score =  207 bits (526), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 102/202 (50%), Positives = 147/202 (72%), Gaps = 4/202 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + TIL++AP ++ ++T F R I+VFS LR  MG  S+PPN ++++LAL +TF++M P   
Sbjct: 46  VLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVAT 105

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +S   GI+P +  +I    A  + A+PF  FM  NTREKDL+LF  + +  +  T     
Sbjct: 106 KSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNTREKDLALFYRIRNLPNPKTI---- 161

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D +   +L+P+FMISEL+ +FEIGFLI LPFL+IDM+V++++MAMGMMMLPPT ISLPFK
Sbjct: 162 DDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPTMISLPFK 221

Query: 225 VIFFVLIDGWSLLVENLVKSFI 246
           ++ FVL+DGW+LLV+ LV+SF+
Sbjct: 222 LLIFVLVDGWNLLVQRLVESFV 243


>gi|315928248|gb|EFV07564.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
           jejuni DFVF1099]
          Length = 233

 Score =  207 bits (526), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 102/202 (50%), Positives = 147/202 (72%), Gaps = 4/202 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + TIL++AP ++ ++T F R I+VFS LR  MG  S+PPN ++++LAL +TF++M P   
Sbjct: 35  VLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVAT 94

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +S   GI+P +  +I    A  + A+PF  FM  NTREKDL+LF  + +  +  T     
Sbjct: 95  KSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNTREKDLALFYRIRNLPNPKTI---- 150

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D +   +L+P+FMISEL+ +FEIGFLI LPFL+IDM+V++++MAMGMMMLPPT ISLPFK
Sbjct: 151 DDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPTMISLPFK 210

Query: 225 VIFFVLIDGWSLLVENLVKSFI 246
           ++ FVL+DGW+LLV+ LV+SF+
Sbjct: 211 LLIFVLVDGWNLLVQRLVESFV 232


>gi|297569685|ref|YP_003691029.1| flagellar biosynthetic protein FliP [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925600|gb|ADH86410.1| flagellar biosynthetic protein FliP [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 247

 Score =  207 bits (526), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 97/201 (48%), Positives = 142/201 (70%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           +FT+L++AP +L+M+TCF R I+VFS LR  +G   +PPN V++ LA+F+T ++M+P   
Sbjct: 50  VFTVLAMAPAILLMMTCFTRLIVVFSFLRNAIGTQQMPPNQVLVGLAMFLTLFIMAPVFS 109

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +  +  I P M  +I    A+Q  AEP   FM   TREKDL LF+ +A +    T     
Sbjct: 110 QINQTAIGPYMEEEIGAEEALQLAAEPIREFMFKQTREKDLELFLGLARAPRPQT----K 165

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D +   ILIP+FMISEL+ +F IGF++ LPFL+IDM+VA+++++MGMMMLPP  ++LPFK
Sbjct: 166 DDVPTHILIPAFMISELKTAFTIGFVLFLPFLVIDMVVASVLLSMGMMMLPPIMVALPFK 225

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW L+V +LV+SF
Sbjct: 226 ILLFVLVDGWYLIVGSLVRSF 246


>gi|148926523|ref|ZP_01810205.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|145845217|gb|EDK22311.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni
           CG8486]
          Length = 244

 Score =  207 bits (526), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 102/202 (50%), Positives = 147/202 (72%), Gaps = 4/202 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + TIL++AP ++ ++T F R I+VFS LR  MG  S+PPN ++++LAL +TF++M P   
Sbjct: 46  VLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVAT 105

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +S   GI+P +  +I    A  + A+PF  FM  NTREKDL+LF  + +  +  T     
Sbjct: 106 KSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNTREKDLALFYRIRNLPNPKTI---- 161

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D +   +L+P+FMISEL+ +FEIGFLI LPFL+IDM+V++++MAMGMMMLPPT ISLPFK
Sbjct: 162 DDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPTMISLPFK 221

Query: 225 VIFFVLIDGWSLLVENLVKSFI 246
           ++ FVL+DGW+LLV+ LV+SF+
Sbjct: 222 LLIFVLVDGWNLLVQRLVESFV 243


>gi|39995531|ref|NP_951482.1| flagellar biosynthesis protein FliP [Geobacter sulfurreducens PCA]
 gi|39982294|gb|AAR33755.1| flagellar biosynthetic protein FliP [Geobacter sulfurreducens PCA]
 gi|298504532|gb|ADI83255.1| flagellar biogenesis protein FliP [Geobacter sulfurreducens KN400]
          Length = 255

 Score =  207 bits (526), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/216 (48%), Positives = 149/216 (68%), Gaps = 7/216 (3%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P D+S+   +++ F + T+LS+AP LL+M T F R  +V S LR  +G    PPN +II+
Sbjct: 46  PGDVSV---VLQIFFLMTVLSLAPGLLMMTTSFTRIAVVLSFLRHAIGTQQAPPNQIIIA 102

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           L+LF+TF+VM+P   +     IQP    QIT+  A++R   P   FM + TREKDL+LF+
Sbjct: 103 LSLFLTFFVMAPVWQQVNTQAIQPYRAAQITQDEALKRAVAPMRKFMLSQTREKDLALFL 162

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
           +++      T     D I    LIP+FMISELR +F+IGFLI +PFL++DM+VA+++M+M
Sbjct: 163 NLSKLPRPRT----ADDIPTLTLIPAFMISELRTAFQIGFLIFIPFLVVDMVVASVLMSM 218

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMMLPP  ISLPFK++ FVL+DGW L++ +L+KSF
Sbjct: 219 GMMMLPPVMISLPFKILLFVLVDGWGLVIGSLIKSF 254


>gi|57167820|ref|ZP_00366960.1| flagellar biosynthesis protein Cj0820c [Campylobacter coli RM2228]
 gi|305432155|ref|ZP_07401321.1| flagellar biosynthetic protein FliP [Campylobacter coli JV20]
 gi|57020942|gb|EAL57606.1| flagellar biosynthesis protein Cj0820c [Campylobacter coli RM2228]
 gi|304444820|gb|EFM37467.1| flagellar biosynthetic protein FliP [Campylobacter coli JV20]
          Length = 247

 Score =  206 bits (525), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 102/202 (50%), Positives = 145/202 (71%), Gaps = 4/202 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + TIL++AP ++ ++T F R I+VFS LR  MG  S+PPN ++++LAL +TF++M P   
Sbjct: 49  VLTILALAPSIIFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVAT 108

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +S   GI+P +  QI    A  R  +PF  FM  NTREKDL+LF  + +  +  T     
Sbjct: 109 KSYNEGIKPYLAEQIGYEEAFARGVKPFKDFMLKNTREKDLALFYRIRNLPNPKTI---- 164

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D +   +L+P+FMISEL+ +FEIGFLI LPFL+IDM+V++++MAMGMMMLPP  ISLPFK
Sbjct: 165 DDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPVMISLPFK 224

Query: 225 VIFFVLIDGWSLLVENLVKSFI 246
           ++ FVL+DGW+LLV+ LV+SF+
Sbjct: 225 LLIFVLVDGWNLLVQRLVESFV 246


>gi|153951658|ref|YP_001398263.1| flagellar biosynthesis protein FliP [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152939104|gb|ABS43845.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 244

 Score =  206 bits (525), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 102/202 (50%), Positives = 146/202 (72%), Gaps = 4/202 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + TIL++AP ++ ++T F R I+VFS LR  MG  S+PPN ++++LAL +TF++M P   
Sbjct: 46  VLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVAT 105

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +S   GI+P +  QI    A  +  +PF  FM  NTREKDL+LF  + +  +  T     
Sbjct: 106 KSYNEGIKPYLAEQIGYEEAFIKGTKPFKDFMLKNTREKDLALFYRIRNLPNPKTI---- 161

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D +   +L+P+FMISEL+ +FEIGFLI LPFL+IDM+V++++MAMGMMMLPPT ISLPFK
Sbjct: 162 DDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPTMISLPFK 221

Query: 225 VIFFVLIDGWSLLVENLVKSFI 246
           ++ FVL+DGW+LLV+ LV+SF+
Sbjct: 222 LLIFVLVDGWNLLVQRLVESFV 243


>gi|294500924|ref|YP_003564624.1| flagellar biosynthetic protein FliP [Bacillus megaterium QM B1551]
 gi|294350861|gb|ADE71190.1| flagellar biosynthetic protein FliP [Bacillus megaterium QM B1551]
          Length = 222

 Score =  206 bits (525), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 103/231 (44%), Positives = 162/231 (70%), Gaps = 18/231 (7%)

Query: 23  LHDVMNI-----PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMG 77
           +++VMN+     P ++S S   V+   + T+ S+AP +LIM+TCF R +IV S +RT +G
Sbjct: 1   MNEVMNLFNSSSPTNISTS---VQLLLLLTVFSVAPGILIMMTCFTRIVIVLSFVRTSLG 57

Query: 78  MGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMR 137
              +PPN +++ L+LF+TF++M+PT  +  E  +QPL+  +IT   A ++ AEP   FM 
Sbjct: 58  TQQMPPNQILVGLSLFLTFFIMAPTFSQVNEQALQPLLKEKITLNQAYEKAAEPMKEFMS 117

Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIE---YRILIPSFMISELRRSFEIGFLIILP 194
            +TR+KDL+LF++ A       DI +   ++      L+P++ ISEL+ +F+IGF+I +P
Sbjct: 118 AHTRQKDLALFLEYA-------DIDRPSSVQDIPLTALVPAYAISELKTAFQIGFMIFIP 170

Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           FLIIDMI+A+++M+MGMMMLPP  ISLPFK++ FVL+DGW+L+V++L+ SF
Sbjct: 171 FLIIDMIIASVLMSMGMMMLPPVMISLPFKILLFVLVDGWNLVVKSLLISF 221


>gi|302872555|ref|YP_003841191.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302575414|gb|ADL43205.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 253

 Score =  206 bits (525), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 101/231 (43%), Positives = 159/231 (68%), Gaps = 4/231 (1%)

Query: 15  ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74
           ++ FA +S    ++ P +    +  ++     TIL++AP +LIM+T F R +IV   +R 
Sbjct: 26  QIAFASASFSINLDNPQNPKDVSSALQLIIFLTILTLAPSILIMMTSFTRILIVLGFVRN 85

Query: 75  GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134
            +G   +PPN ++I LALF+TF+VM+P  D+      QP +  QIT   A++R  +P   
Sbjct: 86  ALGTQQMPPNQILIGLALFLTFFVMAPVTDKIYTQAYQPYIKGQITSQEALKRAEQPLKE 145

Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
           FM  NTR+KDL LF+ + +  + NT++     +  R+++P+F+ISEL+ +FE+GFLI +P
Sbjct: 146 FMLKNTRKKDLDLFVKLGNI-NPNTNV---KDLPIRVVVPAFIISELKSAFEMGFLIYVP 201

Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           FLIIDM+VA+I+M+MGM+M+PP  ISLPFK++ F+L+DGW+L+VE+LV+SF
Sbjct: 202 FLIIDMVVASILMSMGMLMIPPVMISLPFKILLFILVDGWNLVVESLVRSF 252


>gi|315124338|ref|YP_004066342.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315018060|gb|ADT66153.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 230

 Score =  206 bits (525), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 102/202 (50%), Positives = 147/202 (72%), Gaps = 4/202 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + TIL++AP ++ ++T F R I+VFS LR  MG  S+PPN ++++LAL +TF++M P   
Sbjct: 32  VLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVAT 91

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +S   GI+P +  +I    A  + A+PF  FM  NTREKDL+LF  + +  +  T     
Sbjct: 92  KSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNTREKDLALFYRIRNLPNPKTI---- 147

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D +   +L+P+FMISEL+ +FEIGFLI LPFL+IDM+V++++MAMGMMMLPPT ISLPFK
Sbjct: 148 DDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPTMISLPFK 207

Query: 225 VIFFVLIDGWSLLVENLVKSFI 246
           ++ FVL+DGW+LLV+ LV+SF+
Sbjct: 208 LLIFVLVDGWNLLVQRLVESFV 229


>gi|312792663|ref|YP_004025586.1| flagellar biosynthetic protein flip [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179803|gb|ADQ39973.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 253

 Score =  206 bits (523), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 104/231 (45%), Positives = 162/231 (70%), Gaps = 4/231 (1%)

Query: 15  ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74
           E+ FA +SL+  +  P +    +  ++     TIL++AP +LIM+T F R +IV   +R 
Sbjct: 26  EIAFASASLNINLGSPQNPKDVSSALQLLIFLTILTLAPSILIMMTSFTRILIVLGFVRN 85

Query: 75  GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134
            +G   +PPN ++I LALF+TF+VM+P  D+      QP +N +IT   A++R  EP   
Sbjct: 86  ALGTQQMPPNQILIGLALFLTFFVMAPVTDKIYTQAYQPYINGRITSQEALKRAEEPLKE 145

Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
           FM  NTR+KDL LF+ +++  + NT++     +  R+++P+F+ISEL+ +FE+GFLI +P
Sbjct: 146 FMLKNTRKKDLDLFVKLSNV-NPNTNV---KDLPLRVVVPAFIISELKSAFEMGFLIYVP 201

Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           FLIIDM+VA+I+M+MGM+M+PP  ISLPFK++ F+L+DGW+L+VE+LV+SF
Sbjct: 202 FLIIDMVVASILMSMGMLMIPPVMISLPFKILLFILVDGWNLVVESLVRSF 252


>gi|315638458|ref|ZP_07893635.1| flagellar biosynthetic protein FliP [Campylobacter upsaliensis
           JV21]
 gi|315481449|gb|EFU72076.1| flagellar biosynthetic protein FliP [Campylobacter upsaliensis
           JV21]
          Length = 244

 Score =  206 bits (523), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 101/202 (50%), Positives = 146/202 (72%), Gaps = 4/202 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + TIL++AP ++ ++T F R IIVFS LR  MG  S+PPN +++++AL +TF++M P   
Sbjct: 46  VLTILALAPSIIFIMTSFLRLIIVFSFLRQAMGTQSMPPNTILVTMALILTFFIMEPVAT 105

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +S   G++P ++ QI    A  R  +PF  FM  NTREKDL+LF  + +  +  T     
Sbjct: 106 KSYNEGVKPYLSEQIGYEEAFVRGVKPFKDFMLKNTREKDLALFYRIRNLPNPKTI---- 161

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D +   +L+P+FMISEL+ +FEIGFLI LPFL+IDM+V++++MAMGMMMLPP  ISLPFK
Sbjct: 162 DDVPLSVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPVMISLPFK 221

Query: 225 VIFFVLIDGWSLLVENLVKSFI 246
           ++ FVL+DGW+LLV+ LV+SF+
Sbjct: 222 LLIFVLVDGWNLLVQRLVESFV 243


>gi|66735095|gb|AAY53788.1| flagella export apparatus [Campylobacter jejuni]
          Length = 233

 Score =  205 bits (522), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 101/202 (50%), Positives = 147/202 (72%), Gaps = 4/202 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + TIL++AP ++ ++T F R I+VFS LR  MG  S+PPN ++++LAL +TF++M P   
Sbjct: 35  VLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVAT 94

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +S   GI+P ++ +I    A  + A+PF  FM  NTREKDL+LF  + +  +  T     
Sbjct: 95  KSYNEGIKPYLSEKIGYEEAFIKGAKPFKDFMLKNTREKDLALFYRIRNLPNPKTI---- 150

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D +   +L+P+FMISEL+ +FEIGFLI  PFL+IDM+V++++MAMGMMMLPPT ISLPFK
Sbjct: 151 DDVPLTVLVPAFMISELKTAFEIGFLIYQPFLVIDMVVSSVLMAMGMMMLPPTMISLPFK 210

Query: 225 VIFFVLIDGWSLLVENLVKSFI 246
           ++ FVL+DGW+LLV+ LV+SF+
Sbjct: 211 LLIFVLVDGWNLLVQRLVESFV 232


>gi|197104388|ref|YP_002129765.1| flagellar biosynthesis protein FliP [Phenylobacterium zucineum
           HLK1]
 gi|196477808|gb|ACG77336.1| flagellar biosynthesis protein FliP [Phenylobacterium zucineum
           HLK1]
          Length = 245

 Score =  205 bits (522), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 99/212 (46%), Positives = 148/212 (69%), Gaps = 4/212 (1%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
            ++  +V+  G+ T+LS+AP ++IM T F R ++V S+LRT +G+   PPN VIISLALF
Sbjct: 31  GLTERVVQLVGLLTVLSLAPSIVIMTTSFVRIVVVLSLLRTALGVQQSPPNAVIISLALF 90

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           +T  VM PT +RS + G++PL++ QI    A      P   FM +    +DL+LF+ ++ 
Sbjct: 91  LTAIVMGPTFERSYQEGVKPLLDQQIELPQAFDAAGAPVKTFMLSQVDPEDLALFVRLSR 150

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
                T     +    R++ P+FMISEL+R+FEIGFL+ +PFL+ID++VA+++M+MGMMM
Sbjct: 151 IPRPAT----MEDTPLRVVTPAFMISELKRAFEIGFLLFIPFLVIDLVVASVLMSMGMMM 206

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LPP ++SLPFK+IFFVL+DGW L+  +LV+SF
Sbjct: 207 LPPVTVSLPFKLIFFVLVDGWRLVAGSLVESF 238


>gi|167005441|ref|ZP_02271199.1| flagellar biosynthesis protein FliP [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 244

 Score =  205 bits (522), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 101/202 (50%), Positives = 147/202 (72%), Gaps = 4/202 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + TIL++AP ++ ++T F R I+VFS LR  MG  S+PPN ++++LAL +TF++M P   
Sbjct: 46  VLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVAT 105

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +S   GI+P ++ +I    A  + A+PF  FM  NTREKDL+LF  + +  +  T     
Sbjct: 106 KSYNEGIKPYLSEKIGYEEAFIKGAKPFKDFMLKNTREKDLALFYRIRNLPNPKTI---- 161

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D +   +L+P+FMISEL+ +FEIGFLI  PFL+IDM+V++++MAMGMMMLPPT ISLPFK
Sbjct: 162 DDVPLTVLVPAFMISELKTAFEIGFLIYQPFLVIDMVVSSVLMAMGMMMLPPTMISLPFK 221

Query: 225 VIFFVLIDGWSLLVENLVKSFI 246
           ++ FVL+DGW+LLV+ LV+SF+
Sbjct: 222 LLIFVLVDGWNLLVQRLVESFV 243


>gi|78224289|ref|YP_386036.1| flagellar biosynthesis protein FliP [Geobacter metallireducens
           GS-15]
 gi|78195544|gb|ABB33311.1| Flagellar transport protein FliP [Geobacter metallireducens GS-15]
          Length = 250

 Score =  205 bits (521), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 107/217 (49%), Positives = 149/217 (68%), Gaps = 9/217 (4%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P D+S    +++ F + T+LS+AP L++M T F R +IV S LR  +G    PPN +I++
Sbjct: 41  PGDVST---VLQIFFLMTVLSLAPGLMMMTTSFTRIVIVLSFLRNAIGTQQSPPNQIIVA 97

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           L+LF+TF+VMSP   +     IQP    QIT+  A +R   P   FM + TREKDL+LF+
Sbjct: 98  LSLFLTFFVMSPVWQQVNTQAIQPYRAAQITQEEAFRRAQVPVRKFMFSQTREKDLALFI 157

Query: 150 DMAH-SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
           +++     RN D      I    LIP+FMISELR +F+IGFLI +PFL+IDM+VA+++M+
Sbjct: 158 NLSKLQRPRNAD-----DIPTLTLIPAFMISELRTAFQIGFLIFIPFLVIDMVVASVLMS 212

Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MGMMMLPP  ISLPFK++ FVL+DGW L++ +LVKSF
Sbjct: 213 MGMMMLPPVMISLPFKILLFVLVDGWGLVIGSLVKSF 249


>gi|163732490|ref|ZP_02139935.1| flagellar biosynthesis protein P [Roseobacter litoralis Och 149]
 gi|161393850|gb|EDQ18174.1| flagellar biosynthesis protein P [Roseobacter litoralis Och 149]
          Length = 243

 Score =  205 bits (521), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 111/251 (44%), Positives = 155/251 (61%), Gaps = 15/251 (5%)

Query: 1   MIRYCFFALFLVT---PELVFAKS---SLHDVMNIPADLSISTWIVRTFGIFTILSIAPI 54
           M R    A+FL     P + FA+    SL D      D S+S   ++ F + T+LS+AP 
Sbjct: 1   MTRVVLLAVFLTGVFIPSVSFAQDLSISLGD------DGSLSARTIQLFILITVLSLAPG 54

Query: 55  LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
           L IM+TCFP  + V SILR  +G+   PPN++I+SLALF+T+++M P    + + GIQPL
Sbjct: 55  LAIMITCFPFLVTVLSILRQAIGLQQSPPNMLIVSLALFLTYFIMEPVFQAAWQNGIQPL 114

Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
            +N I   TA  R  EPF  FM       D   F  MA       D T        +L+P
Sbjct: 115 TDNAIDAETAFVRTLEPFRSFM---AARLDPDTFFAMAELRSETIDATPTAEAPLSVLVP 171

Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234
           SF++SE+ R+F+IGFL+ LPFLIID++VA ++M+MGMMM+PP  +SLPFK+ FFVL DGW
Sbjct: 172 SFLLSEISRAFQIGFLVFLPFLIIDLVVAAVLMSMGMMMVPPVIVSLPFKLAFFVLADGW 231

Query: 235 SLLVENLVKSF 245
           +L+  +LV+S+
Sbjct: 232 NLIAGSLVQSY 242


>gi|205356321|ref|ZP_03223086.1| putative lipoprotein [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205345706|gb|EDZ32344.1| putative lipoprotein [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 233

 Score =  205 bits (521), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 102/202 (50%), Positives = 146/202 (72%), Gaps = 4/202 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + TIL +AP ++ ++T F R I+VFS LR  MG  S+PPN ++++LAL +TF++M P   
Sbjct: 35  VLTILVLAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVAT 94

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +S   GI+P +  +I    A  + A+PF  FM  NTREKDL+LF  + +  +  T     
Sbjct: 95  KSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNTREKDLALFYRIRNLPNPKTI---- 150

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D +   +L+P+FMISEL+ +FEIGFLI LPFL+IDM+V++++MAMGMMMLPPT ISLPFK
Sbjct: 151 DDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPTMISLPFK 210

Query: 225 VIFFVLIDGWSLLVENLVKSFI 246
           ++ FVL+DGW+LLV+ LV+SF+
Sbjct: 211 LLIFVLVDGWNLLVQRLVESFV 232


>gi|283957192|ref|ZP_06374656.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283791368|gb|EFC30173.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 244

 Score =  204 bits (520), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 101/202 (50%), Positives = 146/202 (72%), Gaps = 4/202 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + TIL++AP ++ ++T F R I+VFS LR  MG  S+PPN ++++LAL +TF++M P   
Sbjct: 46  VLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEPVAT 105

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +S   GI+P +  +I    A  +  +PF  FM  NTREKDL+LF  + +  +  T     
Sbjct: 106 KSYNEGIKPYLAEKIGYEEAFIKGVKPFKDFMLKNTREKDLALFYRIRNLPNPKTI---- 161

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D +   +L+P+FMISEL+ +FEIGFLI LPFL+IDM+V++++MAMGMMMLPPT ISLPFK
Sbjct: 162 DDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPTMISLPFK 221

Query: 225 VIFFVLIDGWSLLVENLVKSFI 246
           ++ FVL+DGW+LLV+ LV+SF+
Sbjct: 222 LLIFVLVDGWNLLVQRLVESFV 243


>gi|313895854|ref|ZP_07829408.1| flagellar biosynthetic protein FliP [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975279|gb|EFR40740.1| flagellar biosynthetic protein FliP [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 255

 Score =  204 bits (519), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 98/216 (45%), Positives = 154/216 (71%), Gaps = 7/216 (3%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P D++ S   ++   + T+LS+AP +LIM T F R ++V   LR  +   +VPPN V+++
Sbjct: 46  PQDVAAS---MQLLAVLTVLSLAPAMLIMTTSFVRIVVVIGFLRNALSTQNVPPNQVVLA 102

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           L+LF+TFY+M+P   ++ E GI+P ++ QIT+  A++ V EP   FM + TRE DL+LF+
Sbjct: 103 LSLFLTFYIMAPYWGQANENGIRPYLDGQITQEQALENVVEPMRDFMFHQTRESDLALFV 162

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
           +++ +   N+     D +    LIP+F+ISEL+ +F+IGF+I +PF++IDMIVA+ +M+M
Sbjct: 163 NLSDAERPNSP----DDVSTFTLIPAFIISELKTAFQIGFMIYIPFIVIDMIVASTLMSM 218

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMMLPP  ISLPFK++ FV++DGW LL+++L+ SF
Sbjct: 219 GMMMLPPVMISLPFKILLFVMVDGWHLLIQSLIMSF 254


>gi|149203108|ref|ZP_01880079.1| flagellar biosynthetic protein FliP [Roseovarius sp. TM1035]
 gi|149143654|gb|EDM31690.1| flagellar biosynthetic protein FliP [Roseovarius sp. TM1035]
          Length = 245

 Score =  204 bits (519), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 100/215 (46%), Positives = 146/215 (67%), Gaps = 3/215 (1%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D S+S   ++   + T+LS+AP + IMVTCFP  + V SILR G+G+   PPN++I+SLA
Sbjct: 34  DASLSARTLQLIALITVLSLAPGIAIMVTCFPFVVTVLSILRQGIGLQQSPPNMLIVSLA 93

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           LF+TF+VM P   ++ E GI+PL+  +++   AI+R   PF VFM        L+    +
Sbjct: 94  LFLTFFVMEPVFTQAWETGIEPLLQERLSPDLAIERTLAPFRVFMLGRVDPDTLA---TI 150

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           A      T ++        ILIPSFM+SE+ R+F+IGFL+ LPFLIID++VA I+M+MGM
Sbjct: 151 AALRPETTTLSAGPDAPLSILIPSFMLSEIARAFQIGFLVFLPFLIIDLVVAAILMSMGM 210

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           MM+PP  +SLPFK+ FFV+ DGW+L+ E+LV+ ++
Sbjct: 211 MMVPPAIVSLPFKLAFFVIADGWTLIAESLVRGYL 245


>gi|320529418|ref|ZP_08030506.1| flagellar biosynthetic protein FliP [Selenomonas artemidis F0399]
 gi|320138384|gb|EFW30278.1| flagellar biosynthetic protein FliP [Selenomonas artemidis F0399]
          Length = 255

 Score =  204 bits (518), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 98/216 (45%), Positives = 153/216 (70%), Gaps = 7/216 (3%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P D++ S   ++   + T+LS+AP +LIM T F R ++V   LR  +   +VPPN V+++
Sbjct: 46  PQDVAAS---MQLLAVLTVLSLAPAMLIMTTSFVRIVVVIGFLRNALSTQNVPPNQVVLA 102

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           L+LF+TFY+M+P   ++ E GI+P ++ QIT+  A++ V EP   FM   TRE DL+LF+
Sbjct: 103 LSLFLTFYIMAPYWGQANENGIRPYLDGQITQEQALENVVEPMRDFMFRQTRESDLALFV 162

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
           +++ +   N+     D +    LIP+F+ISEL+ +F+IGF+I +PF++IDMIVA+ +M+M
Sbjct: 163 NLSDAERPNSP----DDVSTFTLIPAFIISELKTAFQIGFMIYIPFIVIDMIVASTLMSM 218

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMMLPP  ISLPFK++ FV++DGW LL+++L+ SF
Sbjct: 219 GMMMLPPVMISLPFKILLFVMVDGWHLLIQSLIMSF 254


>gi|52080238|ref|YP_079029.1| flagellar biosynthesis protein FliP [Bacillus licheniformis ATCC
           14580]
 gi|52785615|ref|YP_091444.1| flagellar biosynthesis protein FliP [Bacillus licheniformis ATCC
           14580]
 gi|319645983|ref|ZP_08000213.1| FliP protein [Bacillus sp. BT1B_CT2]
 gi|52003449|gb|AAU23391.1| flagellar protein [Bacillus licheniformis ATCC 14580]
 gi|52348117|gb|AAU40751.1| FliP [Bacillus licheniformis ATCC 14580]
 gi|317391733|gb|EFV72530.1| FliP protein [Bacillus sp. BT1B_CT2]
          Length = 221

 Score =  203 bits (517), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 105/222 (47%), Positives = 151/222 (68%), Gaps = 11/222 (4%)

Query: 24  HDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPP 83
            D  N+ A        VR   + T+ SIAP +LI++TCF R +IV S +RT +   S+PP
Sbjct: 11  SDAANVSAS-------VRLLLLLTVFSIAPGILILMTCFTRVVIVLSFVRTSLATQSMPP 63

Query: 84  NLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREK 143
           N V+I LALF+TF++M PT     +  + PLMNN+IT   A  +   P   FM  +TR+K
Sbjct: 64  NQVLIGLALFLTFFIMGPTFSEINKEALTPLMNNKITLDEAYTKAEAPIKTFMSKHTRQK 123

Query: 144 DLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVA 203
           DL+LFM+ A      T  + ND I    ++P+F+ISEL+ +F++GF+I +PFLIIDM+VA
Sbjct: 124 DLALFMNYAK---METPESIND-IPLSTMVPAFVISELKTAFQMGFMIFIPFLIIDMVVA 179

Query: 204 TIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +++M+MGMMMLPP  ISLPFK++ FVL+DGW L+V++L++SF
Sbjct: 180 SVLMSMGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLLQSF 221


>gi|229544408|ref|ZP_04433466.1| flagellar biosynthetic protein FliP [Bacillus coagulans 36D1]
 gi|229324893|gb|EEN90570.1| flagellar biosynthetic protein FliP [Bacillus coagulans 36D1]
          Length = 221

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 95/206 (46%), Positives = 145/206 (70%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+   + T+LS+AP +LI++T F R +IV S +RT +G  + PPN VI+ LALF+TF++M
Sbjct: 20  VKILLLMTVLSLAPSILILLTSFTRIVIVLSFVRTSLGTQTAPPNQVIVGLALFLTFFIM 79

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +PT  +  +  + PL ++++T   A  +  +PF  FM   TR+KDL LF+D AH     +
Sbjct: 80  APTFQQVNKQALTPLFHDKLTLEEAYDKAQKPFKEFMAKETRQKDLQLFLDYAHKKQPKS 139

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                  I    L+P+F ISEL+ +F++GF+I +PFL+IDM+VA+++M+MGMMMLPP  I
Sbjct: 140 ----VQDIPMTTLVPAFTISELKTAFQMGFMIFIPFLVIDMVVASVLMSMGMMMLPPVMI 195

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW L+V++L++SF
Sbjct: 196 SLPFKILLFVLVDGWYLVVKSLLESF 221


>gi|312135838|ref|YP_004003176.1| flagellar biosynthetic protein flip [Caldicellulosiruptor
           owensensis OL]
 gi|311775889|gb|ADQ05376.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor
           owensensis OL]
          Length = 253

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 105/245 (42%), Positives = 162/245 (66%), Gaps = 10/245 (4%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           +I  CF        EL FA ++++  +  P +    +  ++     TIL++ P +LIM+T
Sbjct: 18  LITVCF------KKELAFATANININLGNPQNPDDISSALQLIIFLTILTLVPSILIMMT 71

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R +IV   +R  +G   +PPN ++I LALF+TF+VM+P  D+      QP +N +IT
Sbjct: 72  SFTRILIVLGFVRNALGTQQMPPNQILIGLALFLTFFVMAPVTDKIYTQAYQPYINGEIT 131

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A++R   P   FM  NTR+KDL LF+ + +  + NT+I     +  R+++P+F+ISE
Sbjct: 132 SQEALKRAEVPLKEFMLKNTRKKDLDLFVKLGNV-NPNTNIR---DLPLRVVVPAFIISE 187

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +FE+GFLI +PFLIIDM VA+I+M+MGM+M+PP  ISLPFK++ F+L+DGW+L+VE+
Sbjct: 188 LKSAFEMGFLIYVPFLIIDMTVASILMSMGMLMIPPVMISLPFKILLFILVDGWNLVVES 247

Query: 241 LVKSF 245
           LV+SF
Sbjct: 248 LVRSF 252


>gi|302037618|ref|YP_003797940.1| flagellar biosynthetic protein FliP [Candidatus Nitrospira
           defluvii]
 gi|300605682|emb|CBK42015.1| Flagellar biosynthetic protein FliP, export component [Candidatus
           Nitrospira defluvii]
          Length = 266

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 100/207 (48%), Positives = 144/207 (69%), Gaps = 4/207 (1%)

Query: 39  IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
           +++   +FT+LS+AP L IMVT F R +IV S LR  MG   VPPN V+ISLALF+T +V
Sbjct: 63  VLQILALFTVLSLAPALFIMVTSFTRMVIVLSFLRQAMGTQQVPPNQVLISLALFLTMFV 122

Query: 99  MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
           M+P      +  +QPL+  QI    A  R  +P   FM    R+KDL LFM+++H+    
Sbjct: 123 MAPVGQAVYKDALQPLLAEQIGYEDAWNRGIQPIRAFMLKQMRDKDLELFMELSHAPKA- 181

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
              T+ + +   ++IP+F++SELR +F+IGFL+ +PFLI+DM+VA+++M+MGMM+LPP  
Sbjct: 182 ---TQVEQVPIHVIIPAFVLSELRIAFQIGFLLYIPFLIVDMVVASVLMSMGMMLLPPVM 238

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ISLPFK+I FVL DGW L+V ++V+SF
Sbjct: 239 ISLPFKLILFVLADGWYLVVGSMVRSF 265


>gi|182418437|ref|ZP_02949731.1| flagellar biosynthetic protein FliP [Clostridium butyricum 5521]
 gi|237666336|ref|ZP_04526321.1| flagellar biosynthetic protein FliP [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182377819|gb|EDT75363.1| flagellar biosynthetic protein FliP [Clostridium butyricum 5521]
 gi|237657535|gb|EEP55090.1| flagellar biosynthetic protein FliP [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 259

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 100/225 (44%), Positives = 153/225 (68%), Gaps = 5/225 (2%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           S  D  + P D   +   +R    FT+L++ P ++IMVT F R ++VFS L+T +G+   
Sbjct: 40  SFGDGSDSPKDYVTN---IRILIFFTVLALLPSIVIMVTSFTRIVVVFSFLKTAIGVTQS 96

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
            PN ++  LA+F+TF++M P   +    GIQP + N+IT+  AI  +++P   FM   TR
Sbjct: 97  VPNQILTGLAIFLTFFIMQPVYSQMNTNGIQPYLENKITQEQAIDEISKPLKEFMAKETR 156

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           + DL LF+++ +   ++  I +   I +  L+P+F ISELR +FEIGFLI LPFL+IDM+
Sbjct: 157 QDDLELFIEINNVDKQS--IAEAKDIPFTSLVPAFAISELRTAFEIGFLIFLPFLVIDMV 214

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           VA+++M+MGM MLPPT+++LPFK+I FV+++GW LLVE L+KSF+
Sbjct: 215 VASVLMSMGMFMLPPTTVALPFKLILFVMVNGWHLLVEQLIKSFM 259


>gi|110677670|ref|YP_680677.1| flagellar biosynthesis protein FliP [Roseobacter denitrificans OCh
           114]
 gi|109453786|gb|ABG29991.1| flagellar biosynthetic protein FliP [Roseobacter denitrificans OCh
           114]
          Length = 245

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 109/251 (43%), Positives = 155/251 (61%), Gaps = 15/251 (5%)

Query: 1   MIRYCFFALFLV---TPELVFAKS---SLHDVMNIPADLSISTWIVRTFGIFTILSIAPI 54
           M R    A+ L+   TP +  A+    SL D      D S+S   ++ F + T+LS+AP 
Sbjct: 3   MTRITLLAVVLIGLFTPSVSLAQDLSISLGD------DGSLSARTIQLFILITVLSLAPG 56

Query: 55  LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
           L IM+TCFP  + V SILR  +G+   PPN++I+SLALF+T+++M P    + + GIQPL
Sbjct: 57  LAIMITCFPFLVTVLSILRQAIGLQQSPPNMLIVSLALFLTYFIMEPVFQAAWQNGIQPL 116

Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
            +N I   TA  R  EPF +FM       D   F  MA       D          +L+P
Sbjct: 117 TDNAIDAETAFVRTLEPFRIFMAGRL---DPDTFFAMAELRSETIDAAPTAEAPLSVLVP 173

Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234
           SF++SE+ R+F+IGFL+ LPFLIID++VA ++M+MGMMM+PP  +SLPFK+ FFVL DGW
Sbjct: 174 SFLLSEISRAFQIGFLVFLPFLIIDLVVAAVLMSMGMMMVPPVIVSLPFKLAFFVLADGW 233

Query: 235 SLLVENLVKSF 245
           +L+  +LV+S+
Sbjct: 234 NLIAGSLVQSY 244


>gi|73539701|ref|YP_300068.1| flagellar biosynthesis protein FliP [Ralstonia eutropha JMP134]
 gi|72123038|gb|AAZ65224.1| Flagellar transport protein FliP [Ralstonia eutropha JMP134]
          Length = 265

 Score =  202 bits (515), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 101/228 (44%), Positives = 150/228 (65%), Gaps = 6/228 (2%)

Query: 21  SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
            +L  V + P       W   ++T  + T LS  P  ++M+T F R +IV  +LR  +G 
Sbjct: 41  QALPGVTSKPGPGGGQIWSLSIQTLVLLTSLSFLPAAVLMMTGFTRIVIVLGLLRNALGT 100

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
            S PPN V++ L+LF+TF+VMSP LDR      +PL  N+I+  TA+ + AEP   FM  
Sbjct: 101 ASSPPNQVLVGLSLFLTFFVMSPVLDRVYNDAYKPLSENRISLETAMAKAAEPLKGFMLK 160

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
            TREKDL++F  MA +     ++   + +   IL+P+F+ SEL+ +F+IGF I +PFLII
Sbjct: 161 QTREKDLAMFAQMAKAP----EMQGPEEVPMSILVPAFVTSELKTAFQIGFTIFIPFLII 216

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           D++VA+++MAMGMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF+
Sbjct: 217 DLVVASVLMAMGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSFM 264


>gi|295696128|ref|YP_003589366.1| flagellar biosynthetic protein FliP [Bacillus tusciae DSM 2912]
 gi|295411730|gb|ADG06222.1| flagellar biosynthetic protein FliP [Bacillus tusciae DSM 2912]
          Length = 264

 Score =  202 bits (514), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 95/203 (46%), Positives = 145/203 (71%), Gaps = 6/203 (2%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T+LS+AP +L+M+T F R I+V S +R+ + +   PPN V+I LAL +TF+VM+PTL 
Sbjct: 67  LITVLSLAPGILVMITSFTRMIVVLSFVRSALAVQQTPPNQVLIGLALALTFFVMAPTLS 126

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI-TK 163
           +  +  +QP +  ++T+T AI R   PF  FM   TREKDL LF+D     +RN  +  +
Sbjct: 127 QVNQQAVQPYLRGELTQTQAIARAEVPFKHFMAKQTREKDLQLFLD-----YRNVALPDR 181

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
            + I   +L+P++ ISEL+ +FEIGF+I +PFLIIDM++++++MAMGMMMLPP  +SLPF
Sbjct: 182 VEDIPMSLLVPAYTISELKTAFEIGFMIFIPFLIIDMVISSVLMAMGMMMLPPVIVSLPF 241

Query: 224 KVIFFVLIDGWSLLVENLVKSFI 246
           K++ FVL DGW L+V++L+  ++
Sbjct: 242 KILLFVLADGWYLIVKSLLAGYV 264


>gi|238924154|ref|YP_002937670.1| flagellar biosynthetic protein FliP [Eubacterium rectale ATCC
           33656]
 gi|238875829|gb|ACR75536.1| flagellar biosynthetic protein FliP [Eubacterium rectale ATCC
           33656]
 gi|291524887|emb|CBK90474.1| flagellar biosynthetic protein FliP [Eubacterium rectale DSM 17629]
 gi|291529028|emb|CBK94614.1| flagellar biosynthetic protein FliP [Eubacterium rectale M104/1]
          Length = 299

 Score =  202 bits (514), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 96/206 (46%), Positives = 145/206 (70%), Gaps = 5/206 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           VR F + T+LS+AP +LIM+T F R IIV   +RT +G  + PPN V++ LALF+T ++M
Sbjct: 98  VRMFLVLTVLSLAPSILIMLTSFTRIIIVLHFVRTAIGTQTAPPNQVLVGLALFLTLFIM 157

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            PT  +  E  I+PL   +IT+  AI+    PF  FM   T+ KD+ LF+D++   + + 
Sbjct: 158 WPTFSQVNEKAIKPLDEGKITQQEAIKEAEGPFREFMYGQTQTKDIKLFVDISGDEYDDY 217

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           D      + +  L+P+F++SELR +F +GFLI +PF++IDM+V++++M+MGMMMLPPT+I
Sbjct: 218 D-----DVPFTTLVPAFILSELRTAFILGFLIYIPFIVIDMVVSSVLMSMGMMMLPPTTI 272

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           S+PFKV+ F+L DGW L++ NLVK+F
Sbjct: 273 SMPFKVLLFILADGWDLVIGNLVKTF 298


>gi|224438396|ref|ZP_03659323.1| flagellar biosynthesis protein FliP [Helicobacter cinaedi CCUG
           18818]
          Length = 274

 Score =  201 bits (512), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 101/201 (50%), Positives = 142/201 (70%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           I T+L IAP L++++T F R +IVF+ LRT +G    PP  V++SLAL +TF++M P   
Sbjct: 77  IITLLVIAPSLVLVMTSFTRIVIVFAFLRTALGTQQSPPTQVLVSLALVLTFFIMEPVAT 136

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +S E+GI+P    QI+   A +R   PF  FM  NTREKDL+LF  + +  +  T     
Sbjct: 137 KSYEVGIKPYTEKQISYDEAFERAIVPFKDFMIKNTREKDLALFFRIRNLENPQT----V 192

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D +   +LIP+FMISEL+ +F IGFL+ LPFL+IDM++++++MAMGMMMLPP  ISLPFK
Sbjct: 193 DDVPLTVLIPAFMISELKTAFWIGFLLYLPFLVIDMVISSVLMAMGMMMLPPVMISLPFK 252

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW+LL+ NLV+ F
Sbjct: 253 ILVFVLVDGWNLLIGNLVQGF 273


>gi|297538204|ref|YP_003673973.1| flagellar biosynthetic protein FliP [Methylotenera sp. 301]
 gi|297257551|gb|ADI29396.1| flagellar biosynthetic protein FliP [Methylotenera sp. 301]
          Length = 258

 Score =  201 bits (512), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 107/241 (44%), Positives = 154/241 (63%), Gaps = 6/241 (2%)

Query: 7   FALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPR 64
            A  L+ P    A++ +  V  +PA      + +  +T  + T L+  P  L+M+T F R
Sbjct: 21  LASMLMLPGTALAENGMPLVNALPAAGGGQNYTLSLQTLILLTSLTFLPAALLMMTGFTR 80

Query: 65  FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
            IIV S+LR  +G  S PPN V++ LALF+TF+VMSP +D+      QPL  N+IT   A
Sbjct: 81  IIIVLSLLRQALGTQSAPPNQVMVGLALFLTFFVMSPVIDKIYVDAYQPLSENKITMQEA 140

Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
           + + A P   FM   TRE DL+LF++MA      T     D +   +L+P+FM SEL+ +
Sbjct: 141 MDKGAAPLKAFMMKQTREGDLALFVNMAKIEKIETP----DQVPLLVLVPAFMTSELKTA 196

Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           F+IGF I +PFLIIDM+VA+++MAMGMMM+ P+ +SLPFK++ FVL+DGW LL+ +LV+S
Sbjct: 197 FQIGFAIFIPFLIIDMVVASVLMAMGMMMVSPSIVSLPFKLMLFVLVDGWQLLLGSLVQS 256

Query: 245 F 245
           F
Sbjct: 257 F 257


>gi|95929864|ref|ZP_01312605.1| flagellar biosynthetic protein FliP [Desulfuromonas acetoxidans DSM
           684]
 gi|95134160|gb|EAT15818.1| flagellar biosynthetic protein FliP [Desulfuromonas acetoxidans DSM
           684]
          Length = 246

 Score =  201 bits (512), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 96/201 (47%), Positives = 141/201 (70%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + TILS+AP +L+M T F R ++V S +R  MG   +PPN VI+ L+LF+TF++M+P   
Sbjct: 49  VLTILSVAPAILLMTTAFVRVVVVLSFIRQAMGTQQMPPNQVIVGLSLFLTFFIMAPVYS 108

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              E  +QP ++ +I +  A+     P   FM + TREKDL+L +D+A +   +T     
Sbjct: 109 VVNERAVQPYLSGEIDQAQALTEAVNPVRDFMYSQTREKDLALLVDIAGNDRPDT----I 164

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D +    LIP+FM+SEL R+F+IGF++ +PFL+IDM+VA+++M+MGMMMLPP  ISLPFK
Sbjct: 165 DDVPTTTLIPAFMLSELNRAFQIGFMVYVPFLVIDMVVASVLMSMGMMMLPPPIISLPFK 224

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW L+V +LVKSF
Sbjct: 225 LLLFVLVDGWGLVVGSLVKSF 245


>gi|146296296|ref|YP_001180067.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409872|gb|ABP66876.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 251

 Score =  201 bits (511), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 104/221 (47%), Positives = 155/221 (70%), Gaps = 11/221 (4%)

Query: 27  MNIPADLSISTWIVRTFGIF-TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
           MN P D+S +  ++    IF TIL++AP +LIM+T F R +IV   +R  +G   +PPN 
Sbjct: 39  MNNPRDVSSAIQLI----IFLTILTLAPSILIMMTSFTRILIVLGFVRNALGTQQMPPNQ 94

Query: 86  VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145
           ++I LALF+TF++M+P  +R       P +  QIT   A++R   P   FM  NTR+KDL
Sbjct: 95  ILIGLALFLTFFIMAPVGERIYTQSYLPYIKGQITSQEALKRAEAPIKEFMLKNTRKKDL 154

Query: 146 SLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
            LF+ ++     NT+ T N  ++  R++IP+F+ISEL+ +FE+GF+I +PFLIIDM+VA+
Sbjct: 155 DLFIKLS-----NTNPTTNVRNLPLRVVIPAFIISELKSAFEMGFIIYVPFLIIDMVVAS 209

Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           I+M+MGM+M+PP  ISLPFK++ F+L+DGW L+VE+L+KSF
Sbjct: 210 ILMSMGMLMIPPVMISLPFKILLFILVDGWGLVVESLIKSF 250


>gi|313144838|ref|ZP_07807031.1| flagellar biosynthesis protein FliP [Helicobacter cinaedi CCUG
           18818]
 gi|313129869|gb|EFR47486.1| flagellar biosynthesis protein FliP [Helicobacter cinaedi CCUG
           18818]
          Length = 266

 Score =  201 bits (511), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 101/201 (50%), Positives = 142/201 (70%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           I T+L IAP L++++T F R +IVF+ LRT +G    PP  V++SLAL +TF++M P   
Sbjct: 69  IITLLVIAPSLVLVMTSFTRIVIVFAFLRTALGTQQSPPTQVLVSLALVLTFFIMEPVAT 128

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +S E+GI+P    QI+   A +R   PF  FM  NTREKDL+LF  + +  +  T     
Sbjct: 129 KSYEVGIKPYTEKQISYDEAFERAIVPFKDFMIKNTREKDLALFFRIRNLENPQT----V 184

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D +   +LIP+FMISEL+ +F IGFL+ LPFL+IDM++++++MAMGMMMLPP  ISLPFK
Sbjct: 185 DDVPLTVLIPAFMISELKTAFWIGFLLYLPFLVIDMVISSVLMAMGMMMLPPVMISLPFK 244

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW+LL+ NLV+ F
Sbjct: 245 ILVFVLVDGWNLLIGNLVQGF 265


>gi|94264046|ref|ZP_01287846.1| Flagellar transport protein FliP [delta proteobacterium MLMS-1]
 gi|93455557|gb|EAT05744.1| Flagellar transport protein FliP [delta proteobacterium MLMS-1]
          Length = 252

 Score =  201 bits (510), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 95/201 (47%), Positives = 141/201 (70%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T+LS+AP +L+M+TCF R I+VFS LR  +G   +PPN V+I LALF+T ++M+P   
Sbjct: 55  VLTVLSMAPAILLMMTCFTRLIVVFSFLRNAIGTQQMPPNQVLIGLALFLTVFIMAPVFS 114

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +  +  + P M+ +I    A++  AEP   FM   TREKDL LF+ ++ S          
Sbjct: 115 QINQQAVGPYMDEEIGIEEALRTAAEPLREFMFKQTREKDLELFLGLSQSPRPQ----NK 170

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D +   +LIP+FMISEL+ +F IGF++ +PFL+IDM+VA+++++MGMMMLPP  I+LPFK
Sbjct: 171 DDVSTFVLIPAFMISELKTAFTIGFILFIPFLVIDMVVASVLLSMGMMMLPPIMIALPFK 230

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW L+V +LV+SF
Sbjct: 231 ILLFVLVDGWYLIVGSLVRSF 251


>gi|94266368|ref|ZP_01290067.1| Flagellar transport protein FliP [delta proteobacterium MLMS-1]
 gi|93453020|gb|EAT03508.1| Flagellar transport protein FliP [delta proteobacterium MLMS-1]
          Length = 252

 Score =  201 bits (510), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 95/201 (47%), Positives = 141/201 (70%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T+LS+AP +L+M+TCF R I+VFS LR  +G   +PPN V+I LALF+T ++M+P   
Sbjct: 55  VLTVLSMAPAILLMMTCFTRLIVVFSFLRNAIGTQQMPPNQVLIGLALFLTVFIMAPVFS 114

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +  +  + P M+ +I    A++  AEP   FM   TREKDL LF+ ++ S          
Sbjct: 115 QINQQAVGPYMDEEIGIEEALRTAAEPLREFMFKQTREKDLELFLGLSQSPRPQ----NK 170

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D +   +LIP+FMISEL+ +F IGF++ +PFL+IDM+VA+++++MGMMMLPP  I+LPFK
Sbjct: 171 DDVSTFVLIPAFMISELKTAFTIGFILFIPFLVIDMVVASVLLSMGMMMLPPIMIALPFK 230

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW L+V +LV+SF
Sbjct: 231 ILLFVLVDGWYLIVGSLVRSF 251


>gi|239826628|ref|YP_002949252.1| flagellar biosynthesis protein FliP [Geobacillus sp. WCH70]
 gi|239806921|gb|ACS23986.1| flagellar biosynthetic protein FliP [Geobacillus sp. WCH70]
          Length = 222

 Score =  201 bits (510), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 100/217 (46%), Positives = 154/217 (70%), Gaps = 9/217 (4%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P ++S+S   V+   + T+LSIAP +LIM+TCF R +IV S +RT +G   +PPN V++ 
Sbjct: 13  PENVSMS---VKLLLLLTVLSIAPGILIMMTCFTRIVIVLSFVRTSLGTQQMPPNQVLVG 69

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           LALF+TF++M+PT     +  +QPL + +I+   A +R + P   FM  +TR+KDL+LF+
Sbjct: 70  LALFLTFFIMAPTFKEINDQALQPLFSEKISLEQAYERASVPIKEFMSKHTRQKDLALFL 129

Query: 150 DMAHSSHRNTDITKN-DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
                S+   +  K+   I    L+P+F ISE++ +F++GF+I +PFL+IDMIVA+++M+
Sbjct: 130 -----SYSGAEKPKSVQDIPLTTLVPAFAISEIKTAFQMGFMIFIPFLVIDMIVASVLMS 184

Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MGMMMLPP  ISLPFK++ FVL+DGW L+V++L++SF
Sbjct: 185 MGMMMLPPVMISLPFKILLFVLVDGWYLVVKSLLESF 221


>gi|150019068|ref|YP_001311322.1| flagellar biosynthetic protein FliP [Clostridium beijerinckii NCIMB
           8052]
 gi|149905533|gb|ABR36366.1| flagellar biosynthetic protein FliP [Clostridium beijerinckii NCIMB
           8052]
          Length = 259

 Score =  201 bits (510), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 99/225 (44%), Positives = 152/225 (67%), Gaps = 6/225 (2%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           S  D  + P D   S   ++    FTILS+ P ++IM+T F R ++VFS L++ MG+   
Sbjct: 41  SFGDGNSTPQDYVSS---IKILIFFTILSLLPSIVIMMTSFTRIVVVFSFLKSAMGVQQA 97

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
            PN ++  LA+F+T ++M P  +      IQP + N+IT+  A +  ++P   FM   TR
Sbjct: 98  VPNQILTGLAIFLTLFIMQPVYNEVNTKAIQPYLENKITQDQAFEEASKPLKAFMLKQTR 157

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           EKDL LF+++      N  +TK +++ +  LIP+F ISEL+ +F+IGFLI LPFL+IDM+
Sbjct: 158 EKDLELFVEIGGVDKEN--LTK-ENVSFTTLIPAFAISELKTAFQIGFLIYLPFLVIDMV 214

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           V++++M+MGM MLPPT +SLPFK+I FV++DGW LLV++L++SF+
Sbjct: 215 VSSVLMSMGMFMLPPTMVSLPFKLILFVMVDGWYLLVKSLIQSFM 259


>gi|91785622|ref|YP_560828.1| flagellar biosynthesis protein FliP [Burkholderia xenovorans LB400]
 gi|91689576|gb|ABE32776.1| Flagellar transport protein FliP [Burkholderia xenovorans LB400]
          Length = 279

 Score =  201 bits (510), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 104/242 (42%), Positives = 156/242 (64%), Gaps = 7/242 (2%)

Query: 8   ALFLVTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
           AL L  P L FA+++     N    P   +  +  V+T  + T+LS  P +++M+T F R
Sbjct: 42  ALMLALPTLSFAQAAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTR 101

Query: 65  FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
            IIV S+LR  +G  + PPN V++ LALF+T +VMSP LD++   G +P  +  I   TA
Sbjct: 102 IIIVLSLLRQALGTTTTPPNQVLVGLALFLTLFVMSPVLDKAYTDGYKPFSDGTIPMETA 161

Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
           + R   PF  FM   TRE DL+LF  ++H++     +   + +   +L+PSF+ SEL+  
Sbjct: 162 VNRGLAPFKTFMLRQTRESDLALFARISHAA----PMQGPEDVPLSLLVPSFVTSELKTG 217

Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           F+IGF I +PFLIIDM+VA+++M+MGMMM+ P +ISLPFK++ FVL+DGW LL+ +L +S
Sbjct: 218 FQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATISLPFKLMLFVLVDGWQLLLGSLAQS 277

Query: 245 FI 246
           F+
Sbjct: 278 FV 279


>gi|154174223|ref|YP_001408145.1| flagellar biosynthesis protein FliP [Campylobacter curvus 525.92]
 gi|112802855|gb|EAU00199.1| flagellar biosynthetic protein FliP [Campylobacter curvus 525.92]
          Length = 245

 Score =  200 bits (509), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 107/200 (53%), Positives = 140/200 (70%), Gaps = 6/200 (3%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           TIL++AP L+ M+T F R IIVFS LR  MG   VPP+ VIISLA+ +TF++M P   +S
Sbjct: 50  TILTLAPSLVFMMTSFLRLIIVFSFLRQAMGTQQVPPSTVIISLAMVLTFFIMEPIGRQS 109

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-D 165
            + G++P +  QI      +R  +PF  FM  NTREKDL+LF  +     RN     N D
Sbjct: 110 YDEGVKPYLAEQIGYEEMFERSVKPFKNFMVKNTREKDLALFFRI-----RNLQNPSNID 164

Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225
            I   I + +FMISEL+ +FEI FL+ LPFL+IDM+V++++MAMGMMMLPP  ISLPFK+
Sbjct: 165 DIPLSIAMSAFMISELKTAFEIAFLLYLPFLVIDMVVSSVLMAMGMMMLPPVMISLPFKL 224

Query: 226 IFFVLIDGWSLLVENLVKSF 245
           + FVL+DGW+LLV NLVKSF
Sbjct: 225 LIFVLVDGWNLLVGNLVKSF 244


>gi|116514991|ref|YP_802620.1| flagellar biosynthesis protein FliP [Buchnera aphidicola str. Cc
           (Cinara cedri)]
 gi|116256845|gb|ABJ90527.1| type III protein export, membrane component [Buchnera aphidicola
           str. Cc (Cinara cedri)]
          Length = 244

 Score =  200 bits (509), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 104/238 (43%), Positives = 165/238 (69%), Gaps = 6/238 (2%)

Query: 10  FLVTPEL-VFAKSSLHDVMN-IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67
           FL  P + +F K S + + + IP + ++  + V++  I TI+S  P  ++M+TCF R II
Sbjct: 9   FLFFPSVFLFEKFSNNKICSFIPDEFNLLNFSVKSSAILTIISFLPACILMMTCFTRIII 68

Query: 68  VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
           V S+LRT +G+   PPN ++I L+LF+TF++MSPTL++     + PL  ++I    A+++
Sbjct: 69  VLSLLRTALGVPYSPPNQILIGLSLFLTFFIMSPTLNKIYNTALIPLYKHEINTEVALKK 128

Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
           + +P  +FM   TR+ D+S+F  +A  S       K D+I + IL+PSF+ISEL+ +F+I
Sbjct: 129 IIKPIHIFMLKQTRKSDISVFWKLAKISFP----MKKDNIPFYILLPSFIISELKTAFQI 184

Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GF ++LPFLIID+++A+I+M++G+MM+ P++ISLP K+I FVL DGW LLV +L KSF
Sbjct: 185 GFTVLLPFLIIDLVIASILMSLGIMMISPSTISLPLKLILFVLSDGWKLLVVSLAKSF 242


>gi|311279110|ref|YP_003941341.1| flagellar biosynthetic protein FliP [Enterobacter cloacae SCF1]
 gi|308748305|gb|ADO48057.1| flagellar biosynthetic protein FliP [Enterobacter cloacae SCF1]
          Length = 245

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 100/227 (44%), Positives = 152/227 (66%), Gaps = 6/227 (2%)

Query: 21  SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           + L  +++ P      +W   V+T    T L+  P +L+M+T F R IIVF +LR+ +G 
Sbjct: 21  AQLPGLVSQPLPGGGQSWSLPVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRSALGT 80

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
            S PPN V++ LALF+TF++MSP +D+      QP  +N+IT   AI + A+P   FM  
Sbjct: 81  ASAPPNQVLLGLALFLTFFIMSPVIDKIYTDAYQPFNDNKITLEQAIDKGAQPLREFMLR 140

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
            TRE DL+LF  ++HS      I   + +  RIL+P+++ SEL+ +F+IGF I +PFLII
Sbjct: 141 QTREADLALFARLSHSE----PIQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLII 196

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           D+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 197 DLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243


>gi|238927449|ref|ZP_04659209.1| flagellar biosynthesis protein FliP [Selenomonas flueggei ATCC
           43531]
 gi|238884731|gb|EEQ48369.1| flagellar biosynthesis protein FliP [Selenomonas flueggei ATCC
           43531]
          Length = 256

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 96/216 (44%), Positives = 151/216 (69%), Gaps = 7/216 (3%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P D++ S  I+    + TI+S+AP +L+M T F R ++V   LR  +   +VPPN V+I+
Sbjct: 47  PQDVATSMQIL---AVLTIMSLAPAILVMTTSFVRIVVVIGFLRNALSTQNVPPNQVVIA 103

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           L+LF+TFY+M+P   ++ E GIQP +  QIT+  A++ + +P   FM   TRE DL+LF+
Sbjct: 104 LSLFLTFYIMAPYWGQANENGIQPYLAGQITQEQALENIVDPMREFMLRQTRESDLALFV 163

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
           +++ +   N      + +    LIP+F+ISEL+ +F++GF+I +PF++IDMIVA+ +M+M
Sbjct: 164 NLSDAPRPNGP----EDVSTFTLIPAFIISELKTAFQLGFMIYIPFIVIDMIVASTLMSM 219

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMMLPP  ISLPFK++ FV++DGW LL+++L+ SF
Sbjct: 220 GMMMLPPVMISLPFKILLFVMVDGWHLLIQSLIMSF 255


>gi|99082784|ref|YP_614938.1| flagellar biosynthesis protein FliP [Ruegeria sp. TM1040]
 gi|99039064|gb|ABF65676.1| Flagellar biosynthetic protein fliP [Ruegeria sp. TM1040]
          Length = 248

 Score =  199 bits (507), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 104/239 (43%), Positives = 153/239 (64%), Gaps = 7/239 (2%)

Query: 7   FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
           FAL L  P++  A+      +N+    SIS   ++   + T+LS+AP LL+M+TCFP  I
Sbjct: 14  FAL-LAQPQVALAQ---ELSLNLADGQSISARTIQLILLITVLSVAPGLLVMLTCFPFLI 69

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
            V SILR  +G+   PPN+++ISLA+F+T++VM P    + E GI PL++ ++    A++
Sbjct: 70  TVLSILRQAIGLQQAPPNMLMISLAMFLTYFVMEPVFTEAWETGIAPLIDEELEVVPALE 129

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           R  EPF VFM N           D+       +D +    +   +LIPSFM+SE+ R+FE
Sbjct: 130 RAVEPFRVFMANRLDPDTYYAIADL-RPGTEGSDPSPESPLS--VLIPSFMLSEITRAFE 186

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGFL+ LPFL+ID++ A I+M+MGMMM+PP  +SLPFK+ FFV+ DGWSL+   LV+S+
Sbjct: 187 IGFLVFLPFLVIDLVTAAILMSMGMMMVPPALVSLPFKLAFFVVADGWSLIASALVRSY 245


>gi|56419769|ref|YP_147087.1| flagellar biosynthesis protein FliP [Geobacillus kaustophilus
           HTA426]
 gi|56379611|dbj|BAD75519.1| flagellar biosynthetic protein [Geobacillus kaustophilus HTA426]
          Length = 222

 Score =  199 bits (507), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 99/206 (48%), Positives = 146/206 (70%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+   + T+LSIAP +LIM+TCF R +IV S +RT +G   +PPN V++ LALF+TF++M
Sbjct: 20  VKLLLLLTVLSIAPGILIMMTCFTRIVIVLSFVRTALGTQQMPPNQVLVGLALFLTFFIM 79

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +PT     +  +QPL  ++I    A +R A P   FM   TR++DL+LF+  + +    T
Sbjct: 80  APTWKEINDQALQPLFADKIDLEEAYERAAVPLKQFMSQYTRQEDLALFLSYSGAKQPKT 139

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
               ND I    L+P+F ISEL+ +F++GF+I +PFL+IDMIVA+++M+MGMMMLPP  I
Sbjct: 140 ---IND-IPMTALVPAFAISELKTAFQMGFMIFIPFLVIDMIVASVLMSMGMMMLPPVMI 195

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW L+V++L++SF
Sbjct: 196 SLPFKILLFVLVDGWHLVVKSLLQSF 221


>gi|307731352|ref|YP_003908576.1| flagellar biosynthetic protein FliP [Burkholderia sp. CCGE1003]
 gi|307585887|gb|ADN59285.1| flagellar biosynthetic protein FliP [Burkholderia sp. CCGE1003]
          Length = 277

 Score =  199 bits (507), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 103/242 (42%), Positives = 155/242 (64%), Gaps = 7/242 (2%)

Query: 8   ALFLVTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
           AL L  P L FA+++     N    P   +  +  V+T  + T+LS  P +++M+T F R
Sbjct: 40  ALMLALPTLSFAQTAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTR 99

Query: 65  FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
            IIV S+LR  +G  + PPN V++ LALF+T +VMSP LD++   G +P     +   TA
Sbjct: 100 IIIVLSLLRQALGTTTTPPNQVLVGLALFLTLFVMSPVLDKAYTDGYKPFSEGTVPMETA 159

Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
           + R   PF  FM   TRE DL+LF  ++H++     +   + +   +L+PSF+ SEL+  
Sbjct: 160 VSRGLAPFKTFMLRQTRESDLALFARISHAA----PMQGPEDVPLSLLVPSFVTSELKTG 215

Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           F+IGF I +PFLIIDM+VA+++M+MGMMM+ P +ISLPFK++ FVL+DGW LL+ +L +S
Sbjct: 216 FQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATISLPFKLMLFVLVDGWQLLLGSLAQS 275

Query: 245 FI 246
           F+
Sbjct: 276 FV 277


>gi|296330850|ref|ZP_06873325.1| flagellar biosynthesis protein FliP [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|296151855|gb|EFG92729.1| flagellar biosynthesis protein FliP [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
          Length = 221

 Score =  199 bits (507), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 97/206 (47%), Positives = 145/206 (70%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+   + T+ S+AP +LI++TCF R +IV S +RT +   S+PPN V+I LALF+TF++M
Sbjct: 20  VKLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATQSMPPNQVLIGLALFLTFFIM 79

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +PT     +  + PLM+N+I+   A  +  EP   FM  +TR+KDL+LFM+ A      +
Sbjct: 80  APTFSEINKEALTPLMDNKISLDEAYSKAEEPIKEFMSKHTRQKDLALFMNYAKMDKPES 139

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                  I    ++P+F ISEL+ +F+IGF+I +PFLIIDM+VA+++M+MGMMMLPP  I
Sbjct: 140 ----LKDIPLTTMVPAFAISELKTAFQIGFMIFIPFLIIDMVVASVLMSMGMMMLPPVMI 195

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW L+V++L++SF
Sbjct: 196 SLPFKILLFVLVDGWYLIVKSLLQSF 221


>gi|242238991|ref|YP_002987172.1| flagellar biosynthetic protein FliP [Dickeya dadantii Ech703]
 gi|242131048|gb|ACS85350.1| flagellar biosynthetic protein FliP [Dickeya dadantii Ech703]
          Length = 254

 Score =  199 bits (507), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 104/250 (41%), Positives = 164/250 (65%), Gaps = 13/250 (5%)

Query: 1   MIRYCFFALFLVTPELVFAKSS---LHDVMNIPADLSISTWI--VRTFGIFTILSIAPIL 55
           ++R  FF + +V     FA +S   L  +++ P      +W   V+T  + T L+  P +
Sbjct: 11  LVRRSFFTILIV----FFAPNSWAQLPGIISQPLANGAQSWSLPVQTLVLLTSLTFIPAV 66

Query: 56  LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115
           L+M+T F R IIV  +LR+ +G  + PPN ++I L+LF+TF++MSP L +  +   QP  
Sbjct: 67  LLMMTSFTRIIIVLGLLRSALGTPTAPPNQILIGLSLFLTFFIMSPVLTKVYQDAYQPFS 126

Query: 116 NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPS 175
            N+I   TAI+R ++P   FM   TRE DL+LF  +A  S     ++  + +  R+L+P+
Sbjct: 127 ENKINMETAIERGSQPLRQFMLRQTRETDLALFARLAEISA----LSGPEAVPMRVLVPA 182

Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235
           F+ SEL+ +F+IGF I +PFLIID++VA+++MA+GMMM+PP ++SLPFK++ FVL+DGW 
Sbjct: 183 FVTSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGWQ 242

Query: 236 LLVENLVKSF 245
           LL+ +LV+SF
Sbjct: 243 LLLSSLVQSF 252


>gi|206561840|ref|YP_002232605.1| flagellar biosynthesis protein FliP [Burkholderia cenocepacia
           J2315]
 gi|198037882|emb|CAR53826.1| flagellar biosynthetic protein FliP precursor [Burkholderia
           cenocepacia J2315]
          Length = 253

 Score =  199 bits (507), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 98/237 (41%), Positives = 154/237 (64%), Gaps = 7/237 (2%)

Query: 12  VTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIV 68
           + P L +A+++     N    P   +  +  V+T  + T+LS  P +L+M+T F R IIV
Sbjct: 20  LAPALAYAQANGLPAFNASPGPHGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTRIIIV 79

Query: 69  FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128
            S+LR  +G  + PPN V++ LA+F+TF+VMSP LDR+   G +P  +  +    A+QR 
Sbjct: 80  LSLLRQALGTATTPPNQVLVGLAMFLTFFVMSPVLDRAYNDGYKPFSDGSMPMEQAVQRG 139

Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188
             PF  FM   TRE DL+LF  ++ ++     +   D +   +L+P+F+ SEL+  F+IG
Sbjct: 140 VAPFKTFMLKQTRETDLALFAKISKAA----PMQGPDDVPLSLLVPAFVTSELKTGFQIG 195

Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           F + +PFLIIDM+VA+++M+MGMMM+ P+++SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 196 FTVFIPFLIIDMVVASVLMSMGMMMVSPSTVSLPFKLMLFVLVDGWQLLIGSLAQSF 252


>gi|83647846|ref|YP_436281.1| flagellar biosynthesis protein FliP [Hahella chejuensis KCTC 2396]
 gi|83635889|gb|ABC31856.1| flagellar biosynthetic protein FliP [Hahella chejuensis KCTC 2396]
          Length = 253

 Score =  199 bits (506), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 101/249 (40%), Positives = 159/249 (63%), Gaps = 9/249 (3%)

Query: 2   IRYCFFALFLVTPELVFAKS-----SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILL 56
           +R  +  LFL+ P + ++       ++  V N P      +  ++   + T L+  P  L
Sbjct: 7   LRLTYLILFLMLPGVAWSAQDAILPAVKLVTN-PDGTQEYSVTLQILALMTALTFIPAFL 65

Query: 57  IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
           +M+T F R IIVFSILR  +G+   P N +++ +ALF+TF++M PT  ++ E+ +QP + 
Sbjct: 66  MMMTSFTRIIIVFSILRQALGLQQAPSNQILVGIALFLTFFIMGPTFKQANEVALQPYLA 125

Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
            Q+T   A+ + +EPF  FM   TRE DL LF+ +A   ++  +    + + + IL+P+F
Sbjct: 126 EQLTAQEAVAKASEPFREFMLRQTRESDLGLFIRLAGDENKYAN---PEEVPFTILMPAF 182

Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
           + SEL+ +F+IGFLI +PFLIIDM+VA+++MAMGMMML P  ISLPFK++ FVL+DGW+L
Sbjct: 183 VTSELKTAFQIGFLIFIPFLIIDMVVASVLMAMGMMMLSPIIISLPFKIMLFVLVDGWAL 242

Query: 237 LVENLVKSF 245
           ++  L  SF
Sbjct: 243 IMGTLAASF 251


>gi|78064698|ref|YP_367467.1| flagellar biosynthesis protein FliP [Burkholderia sp. 383]
 gi|77965443|gb|ABB06823.1| Flagellar transport protein FliP [Burkholderia sp. 383]
          Length = 253

 Score =  199 bits (506), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 99/246 (40%), Positives = 157/246 (63%), Gaps = 7/246 (2%)

Query: 3   RYCFFALFLVTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMV 59
           R+    +  + P L FA+++     N    P   +  +  V+T  + T+LS  P +L+M+
Sbjct: 11  RFAPVLILCLAPALAFAQANGLPAFNASPGPHGGTTYSLSVQTMLLLTMLSFLPAMLLMM 70

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R IIV S+LR  +G  + PPN V++ LA+F+TF+VMSP LDR+   G +P  +  +
Sbjct: 71  TSFTRIIIVLSLLRQALGTATTPPNQVLVGLAMFLTFFVMSPVLDRAYNDGYKPFSDGSM 130

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
               A+QR   PF  FM   TRE DL+LF  ++ ++     +   + +   +L+P+F+ S
Sbjct: 131 PMEQAVQRGVAPFKTFMLKQTRETDLALFAKISKAA----PMQGPEDVPLSLLVPAFVTS 186

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+  F+IGF + +PFLIIDM+VA+++M+MGMMM+ P+++SLPFK++ FVL+DGW LL+ 
Sbjct: 187 ELKTGFQIGFTVFIPFLIIDMVVASVLMSMGMMMVSPSTVSLPFKLMLFVLVDGWQLLIG 246

Query: 240 NLVKSF 245
           +L +SF
Sbjct: 247 SLAQSF 252


>gi|42524694|ref|NP_970074.1| flagellar biosynthesis protein FliP [Bdellovibrio bacteriovorus
           HD100]
 gi|39576904|emb|CAE78133.1| flagellar protein required for flagellar formation [Bdellovibrio
           bacteriovorus HD100]
          Length = 252

 Score =  199 bits (506), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 97/206 (47%), Positives = 142/206 (68%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+   + T+L++AP +LIM+T F R IIV S LR  MG+  +PPN +++ LALF+TF+VM
Sbjct: 50  VKLIMVMTVLTLAPAILIMMTGFTRIIIVLSFLRQAMGVQQMPPNQLLVGLALFLTFFVM 109

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P  +     GIQP M   I++  AI+R   P   FM N TR+ DL+LF+ ++      T
Sbjct: 110 QPAFNEMNTNGIQPYMAGTISQDQAIERTFAPLRKFMFNQTRDSDLALFIKLSKVEKPKT 169

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                  +   +L+P+F++SEL+ +F+IGF+I LPFL+ID++ A+++MAMGMMMLPP  I
Sbjct: 170 ----RADVPTMVLVPAFVVSELKTAFQIGFIIFLPFLVIDIVAASVLMAMGMMMLPPVVI 225

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW LL+ ++VKSF
Sbjct: 226 SLPFKIMLFVLVDGWGLLIGSMVKSF 251


>gi|259417183|ref|ZP_05741102.1| flagellar biosynthetic protein FliP [Silicibacter sp. TrichCH4B]
 gi|259346089|gb|EEW57903.1| flagellar biosynthetic protein FliP [Silicibacter sp. TrichCH4B]
          Length = 248

 Score =  199 bits (506), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 100/237 (42%), Positives = 153/237 (64%), Gaps = 6/237 (2%)

Query: 9   LFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIV 68
           + LV P++  A+      +N+    SIS   ++   + T+LS+AP LL+M+TCFP  I V
Sbjct: 15  VLLVQPQVALAQ---ELSLNLADGQSISARTIQLILLITVLSVAPGLLVMLTCFPFLITV 71

Query: 69  FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128
            SILR  +G+   PPN+++ISLA+F+T++VM P    + + GI PL++ ++    A++R 
Sbjct: 72  LSILRQAIGLQQAPPNMLMISLAMFLTYFVMEPVFTEAWDTGIAPLIDEELEVVPALERA 131

Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188
            EPF VFM N           D+     + +D +    +   +LIPSFM+SE+ R+FEIG
Sbjct: 132 VEPFRVFMANRLDPDTYYAIADL-RPGTQGSDPSPESPLS--VLIPSFMLSEITRAFEIG 188

Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           FL+ LPFL+ID++ A ++M+MGMMM+PP  +SLPFK+ FFV+ DGWSL+   LV+S+
Sbjct: 189 FLVFLPFLVIDLVTAAVLMSMGMMMVPPALVSLPFKLAFFVVADGWSLIASALVRSY 245


>gi|16078698|ref|NP_389517.1| flagellar biosynthesis protein FliP [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221309513|ref|ZP_03591360.1| flagellar biosynthesis protein FliP [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313837|ref|ZP_03595642.1| flagellar biosynthesis protein FliP [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318760|ref|ZP_03600054.1| flagellar biosynthesis protein FliP [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323032|ref|ZP_03604326.1| flagellar biosynthesis protein FliP [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321315402|ref|YP_004207689.1| flagellar biosynthesis protein FliP [Bacillus subtilis BSn5]
 gi|544315|sp|P35528|FLIP_BACSU RecName: Full=Flagellar biosynthetic protein fliP
 gi|142931|gb|AAA22453.1| flagellar protein [Bacillus subtilis]
 gi|2634007|emb|CAB13508.1| component of the flagellar export machinery [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|291484188|dbj|BAI85263.1| flagellar biosynthesis protein FliP [Bacillus subtilis subsp. natto
           BEST195]
 gi|320021676|gb|ADV96662.1| flagellar biosynthesis protein FliP [Bacillus subtilis BSn5]
          Length = 221

 Score =  199 bits (506), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 97/206 (47%), Positives = 145/206 (70%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+   + T+ S+AP +LI++TCF R +IV S +RT +   S+PPN V+I LALF+TF++M
Sbjct: 20  VKLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATQSMPPNQVLIGLALFLTFFIM 79

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +PT     +  + PLM+N+I+   A  +  EP   FM  +TR+KDL+LFM+ A      +
Sbjct: 80  APTFSEINKEALTPLMDNKISLDEAYTKAEEPIKEFMSKHTRQKDLALFMNYAKMDKPES 139

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                  I    ++P+F ISEL+ +F+IGF+I +PFLIIDM+VA+++M+MGMMMLPP  I
Sbjct: 140 ----LKDIPLTTMVPAFAISELKTAFQIGFMIFIPFLIIDMVVASVLMSMGMMMLPPVMI 195

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW L+V++L++SF
Sbjct: 196 SLPFKILLFVLVDGWYLIVKSLLQSF 221


>gi|304438440|ref|ZP_07398380.1| flagellar biosynthetic protein FliP [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304368523|gb|EFM22208.1| flagellar biosynthetic protein FliP [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 249

 Score =  199 bits (506), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 94/218 (43%), Positives = 151/218 (69%), Gaps = 7/218 (3%)

Query: 28  NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87
           N P D++ S   ++   + T++S+AP + +M T F R ++V   LR  +   +VPPN V+
Sbjct: 38  NNPQDVATS---MQVLAVLTVMSLAPAIFVMTTSFVRIVVVIGFLRNALSTQNVPPNQVV 94

Query: 88  ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147
           I+L+LF+TFY+M+P   ++ E GIQP +  QIT+  A++ + +P   FM   TRE DL+L
Sbjct: 95  IALSLFLTFYIMAPYWGQANENGIQPYLEGQITQEQALENIVDPMREFMLRQTRESDLAL 154

Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
           F++++ +   +      + +    LIP+F+ISEL+ +F+IGF+I +PF++IDMIVA+ +M
Sbjct: 155 FVNLSDAPRPDGP----EDVSTFTLIPAFIISELKTAFQIGFMIYIPFIVIDMIVASTLM 210

Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +MGMMMLPP  ISLPFK++ FV++DGW LL+++L+ SF
Sbjct: 211 SMGMMMLPPVMISLPFKILLFVMVDGWHLLIQSLIMSF 248


>gi|261419434|ref|YP_003253116.1| flagellar biosynthesis protein FliP [Geobacillus sp. Y412MC61]
 gi|297530591|ref|YP_003671866.1| flagellar biosynthetic protein FliP [Geobacillus sp. C56-T3]
 gi|319766249|ref|YP_004131750.1| flagellar biosynthetic protein FliP [Geobacillus sp. Y412MC52]
 gi|261375891|gb|ACX78634.1| flagellar biosynthetic protein FliP [Geobacillus sp. Y412MC61]
 gi|297253843|gb|ADI27289.1| flagellar biosynthetic protein FliP [Geobacillus sp. C56-T3]
 gi|317111115|gb|ADU93607.1| flagellar biosynthetic protein FliP [Geobacillus sp. Y412MC52]
          Length = 222

 Score =  199 bits (506), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 99/206 (48%), Positives = 146/206 (70%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+   + T+LSIAP +LIM+TCF R +IV S +RT +G   +PPN V++ LALF+TF++M
Sbjct: 20  VKLLLLLTVLSIAPGILIMMTCFTRIVIVLSFVRTALGTQQMPPNQVLVGLALFLTFFIM 79

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +PT     +  +QPL  ++I    A +R A P   FM   TR++DL+LF+  + +    T
Sbjct: 80  APTWKDINDQALQPLFADKIDLEEAYERAAVPLKQFMSQYTRQEDLALFLSYSGAKQPKT 139

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
               ND I    L+P+F ISEL+ +F++GF+I +PFL+IDMIVA+++M+MGMMMLPP  I
Sbjct: 140 ---IND-IPMTALVPAFAISELKTAFQMGFMIFIPFLVIDMIVASVLMSMGMMMLPPVMI 195

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW L+V++L++SF
Sbjct: 196 SLPFKILLFVLVDGWHLVVKSLLQSF 221


>gi|187925750|ref|YP_001897392.1| flagellar biosynthesis protein FliP [Burkholderia phytofirmans
           PsJN]
 gi|187716944|gb|ACD18168.1| flagellar biosynthetic protein FliP [Burkholderia phytofirmans
           PsJN]
          Length = 277

 Score =  199 bits (505), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 102/236 (43%), Positives = 153/236 (64%), Gaps = 7/236 (2%)

Query: 14  PELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
           P L FA+++     N    P   +  +  V+T  + T+LS  P +L+M+T F R IIV S
Sbjct: 46  PTLSFAQAAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTRIIIVLS 105

Query: 71  ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
           +LR  +G  + PPN V++ LALF+T +VMSP LD++   G +P  +  I   TA+ R   
Sbjct: 106 LLRQALGTSTTPPNQVLVGLALFLTLFVMSPVLDKAYTDGYKPFSDGTIPMETAVNRGLA 165

Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
           PF  FM   TRE DL+LF  ++H++     +   + +   +L+PSF+ SEL+  F+IGF 
Sbjct: 166 PFKTFMLRQTRESDLALFARISHAA----PMQGPEDVPLSLLVPSFVTSELKTGFQIGFT 221

Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           I +PFLIIDM+VA+++M+MGMMM+ P +ISLPFK++ FVL+DGW LL+ +L +SF+
Sbjct: 222 IFIPFLIIDMVVASVLMSMGMMMVSPATISLPFKLMLFVLVDGWQLLLGSLAQSFV 277


>gi|253702494|ref|YP_003023683.1| flagellar biosynthesis protein FliP [Geobacter sp. M21]
 gi|251777344|gb|ACT19925.1| flagellar biosynthetic protein FliP [Geobacter sp. M21]
          Length = 247

 Score =  199 bits (505), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 96/216 (44%), Positives = 149/216 (68%), Gaps = 7/216 (3%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           PAD+S+   +++ F + T++S+AP LL+M T F R ++V S LR+ +G    P N ++I 
Sbjct: 38  PADVSV---VLQIFFLMTVISLAPSLLMMTTSFTRIVVVLSFLRSALGTQQAPSNQIVIG 94

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           L+LF+TF++M+P   +     +QP   +QIT+  A++R   P   FM +  REKDL+LF+
Sbjct: 95  LSLFLTFFIMAPVWQQVNANALQPYRASQITQEEAVKRGVAPLRKFMLSQVREKDLALFI 154

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
           +++            D I    LIP++M+SEL+ +F+IGFLI +PFL++DM+VA+++M+M
Sbjct: 155 NLSKLPRPK----NADDIPTLTLIPAYMVSELKTAFQIGFLIFIPFLVLDMVVASVLMSM 210

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMMLPP  ISLPFK++ FVL+DGW L++ +LVKSF
Sbjct: 211 GMMMLPPVMISLPFKILLFVLVDGWGLVIGSLVKSF 246


>gi|315453643|ref|YP_004073913.1| flagellar biosynthesis protein [Helicobacter felis ATCC 49179]
 gi|315132695|emb|CBY83323.1| flagellar biosynthesis protein [Helicobacter felis ATCC 49179]
          Length = 252

 Score =  199 bits (505), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 98/195 (50%), Positives = 142/195 (72%), Gaps = 6/195 (3%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP L++ +T F R I+VFS LRT +G    PP  +++SLAL +TF++M PT  +S ++ I
Sbjct: 59  APSLVLTMTSFIRLIVVFSFLRTALGTQQTPPTQILVSLALILTFFIMEPTAKKSYKIAI 118

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYR 170
           +P +  +I+ T A +R   PF  FM  NTREKDL+LF  +     RN +  K+ + +   
Sbjct: 119 KPYLAEKISYTQAFERGVVPFKEFMLKNTREKDLALFFRI-----RNLENPKDVNSVPLS 173

Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230
           +L+P+FMISEL+ +F+IGFL+ LPFL+IDM+V++I+MAMGMMMLPP  ISLPFK++ F+L
Sbjct: 174 VLVPAFMISELKTAFQIGFLLYLPFLVIDMVVSSILMAMGMMMLPPVMISLPFKILVFIL 233

Query: 231 IDGWSLLVENLVKSF 245
           +DG++LL+ENLV SF
Sbjct: 234 VDGFNLLIENLVASF 248


>gi|255322335|ref|ZP_05363481.1| flagellar biosynthetic protein FliP [Campylobacter showae RM3277]
 gi|255300708|gb|EET79979.1| flagellar biosynthetic protein FliP [Campylobacter showae RM3277]
          Length = 246

 Score =  199 bits (505), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 102/195 (52%), Positives = 141/195 (72%), Gaps = 6/195 (3%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP L+ M+T F R IIVFS LR  MG   +PP+ V+ISLA+ +TF++M P   ++ E G+
Sbjct: 56  APSLVFMMTSFLRLIIVFSFLRQAMGTQQMPPSTVLISLAMVLTFFIMEPVGKQAYEAGV 115

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYR 170
           QP ++ QI    A +R  +PF  FM  NTREKDL+LF+ +     RN    ++ D I   
Sbjct: 116 QPYLSEQIGYQEAFERGVKPFREFMIKNTREKDLALFLRI-----RNMPNPQSFDDIPLT 170

Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230
           +++ +FMISE++ +FEI FL+ LPFL+IDM+V++++MAMGMMMLPPT ISLPFK++ FVL
Sbjct: 171 VVMSAFMISEMKTAFEIAFLLYLPFLVIDMVVSSVLMAMGMMMLPPTMISLPFKLLIFVL 230

Query: 231 IDGWSLLVENLVKSF 245
           +DGW+LLV NLVKSF
Sbjct: 231 VDGWNLLVMNLVKSF 245


>gi|92114088|ref|YP_574016.1| flagellar biosynthesis protein FliP [Chromohalobacter salexigens
           DSM 3043]
 gi|91797178|gb|ABE59317.1| flagellar biosynthetic protein FliP [Chromohalobacter salexigens
           DSM 3043]
          Length = 249

 Score =  199 bits (505), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 105/247 (42%), Positives = 158/247 (63%), Gaps = 7/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIM 58
           M+R     L L  P   + +  +  +++ P       W +  +T    + L+  P LL+ 
Sbjct: 6   MLRCGLAVLLLAWPAFGWGQE-ISGIVSEPTGDGGQQWSLSLQTLLFLSSLAFLPALLLG 64

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +TCF R IIV S+LRT +G  S PPN V++ LALFMTF++MSP LDR  E    P    +
Sbjct: 65  MTCFTRIIIVLSLLRTAIGTQSTPPNQVLLGLALFMTFFIMSPVLDRVHEQAWVPFSEER 124

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   A+++ ++PF  FM   TRE DL+LF  MA +     ++   + +  R+LIP+F+ 
Sbjct: 125 ISLEQALEQGSQPFREFMFGQTRETDLALFARMADAD----EMQGPEDVPMRLLIPAFLT 180

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF I +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+
Sbjct: 181 SELKTAFQIGFSIFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLI 240

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 241 GSLAESF 247


>gi|311068157|ref|YP_003973080.1| flagellar biosynthesis protein FliP [Bacillus atrophaeus 1942]
 gi|310868674|gb|ADP32149.1| flagellar biosynthesis protein FliP [Bacillus atrophaeus 1942]
          Length = 221

 Score =  198 bits (504), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 97/206 (47%), Positives = 145/206 (70%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+   + T+ S+AP +LI++TCF R +IV S +RT +   S+PPN V+I LALF+TF++M
Sbjct: 20  VKLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATQSMPPNQVLIGLALFLTFFIM 79

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +PT     +  + PLM+N+I+   A  +  EP   FM  +TR+KDL+LFM+ A      +
Sbjct: 80  APTFSDINKEALTPLMDNKISLDEAYTKAEEPIKEFMSKHTRQKDLALFMNYAKMDKPES 139

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                  I    ++P+F ISEL+ +F+IGF+I +PFLIIDM+VA+++M+MGMMMLPP  I
Sbjct: 140 ----LKDIPLTTMVPAFAISELKTAFQIGFMIFIPFLIIDMVVASVLMSMGMMMLPPVMI 195

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW L+V++L++SF
Sbjct: 196 SLPFKILLFVLVDGWYLIVKSLLQSF 221


>gi|197120185|ref|YP_002140612.1| flagellar biosynthesis protein FliP [Geobacter bemidjiensis Bem]
 gi|197089545|gb|ACH40816.1| flagellar biogenesis protein FliP [Geobacter bemidjiensis Bem]
          Length = 247

 Score =  198 bits (504), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 95/216 (43%), Positives = 149/216 (68%), Gaps = 7/216 (3%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           PAD+S+   +++ F + T++S+AP LL+M T F R ++V S LR+ +G    P N +++ 
Sbjct: 38  PADVSV---VLQIFFLMTVISLAPSLLMMTTSFTRIVVVLSFLRSALGTQQAPSNQIVVG 94

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           L+LF+TF++M+P   +     +QP   +QIT+  A++R   P   FM +  REKDL+LF+
Sbjct: 95  LSLFLTFFIMAPVWQQVNANALQPYRASQITQEEAVKRGVAPLRKFMLSQVREKDLALFI 154

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
           +++            D I    LIP++M+SEL+ +F+IGFLI +PFL++DM+VA+++M+M
Sbjct: 155 NLSKLPRPK----NADDIPTLTLIPAYMVSELKTAFQIGFLIFIPFLVLDMVVASVLMSM 210

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMMLPP  ISLPFK++ FVL+DGW L++ +LVKSF
Sbjct: 211 GMMMLPPVMISLPFKILLFVLVDGWGLVIGSLVKSF 246


>gi|332284032|ref|YP_004415943.1| flagellar biosynthesis protein FliP [Pusillimonas sp. T7-7]
 gi|330427985|gb|AEC19319.1| flagellar biosynthesis protein FliP [Pusillimonas sp. T7-7]
          Length = 257

 Score =  198 bits (504), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 101/234 (43%), Positives = 153/234 (65%), Gaps = 6/234 (2%)

Query: 14  PELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
           P +  A+++L  + +        TW   ++T  + T++S  P +L+M+T F R IIV  +
Sbjct: 26  PAMGLAQTTLPALTSAVNPDGSQTWSLSIQTLVLLTMMSFLPAMLMMMTGFTRIIIVLGL 85

Query: 72  LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
           LR  MG G+ PPN ++I LALF+TF+ MSP  D+      QPL N  I    A++R  +P
Sbjct: 86  LRNAMGTGASPPNSILIGLALFLTFFAMSPVFDQIYADAYQPLSNGVIAFEEALERGIKP 145

Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
              FM + TRE DL++F +MA+ +   T     + +  R+L+P+FM SEL+ +F+IGF I
Sbjct: 146 LHSFMLHQTREADLTMFANMANVAELQTA----EEVPLRVLVPAFMASELKTAFQIGFTI 201

Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL DGW LL+ +L +SF
Sbjct: 202 FIPFLIIDLVVASVLMALGMMMVPPVTISLPFKLMLFVLADGWHLLLGSLARSF 255


>gi|194014385|ref|ZP_03053002.1| flagellar biosynthetic protein FliP [Bacillus pumilus ATCC 7061]
 gi|194013411|gb|EDW22976.1| flagellar biosynthetic protein FliP [Bacillus pumilus ATCC 7061]
          Length = 221

 Score =  198 bits (504), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 101/222 (45%), Positives = 153/222 (68%), Gaps = 7/222 (3%)

Query: 25  DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
           D+ N     +IST  VR   + T+ S+AP +LI++TCF R +IV S +RT +   S+PPN
Sbjct: 6   DLFNSSGAGNISTS-VRLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATNSMPPN 64

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
            V++ LALF+TF++M+PT     +  + PL+N+ IT   A ++   P   FM  +TR+KD
Sbjct: 65  QVLVGLALFLTFFIMAPTFSEINKEALTPLLNDDITLNQAYEKAEVPIKEFMSKHTRQKD 124

Query: 145 LSLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVA 203
           L+LF+     S+   D  ++   I    ++P+F ISEL+ +F+IGF+I +PFLIIDM+VA
Sbjct: 125 LALFL-----SYAKIDTPESIKDIPLTAMVPAFAISELKTAFQIGFMIFIPFLIIDMVVA 179

Query: 204 TIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +++M+MGMMMLPP  ISLPFK++ FVL+DGW L+V++L++SF
Sbjct: 180 SVLMSMGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLLQSF 221


>gi|170694404|ref|ZP_02885558.1| flagellar biosynthetic protein FliP [Burkholderia graminis C4D1M]
 gi|170140827|gb|EDT09001.1| flagellar biosynthetic protein FliP [Burkholderia graminis C4D1M]
          Length = 284

 Score =  198 bits (504), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 102/242 (42%), Positives = 155/242 (64%), Gaps = 7/242 (2%)

Query: 8   ALFLVTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
           A+ L  P L FA+++     N    P   +  +  V+T  + T+LS  P +++M+T F R
Sbjct: 47  AIMLALPTLSFAQTAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTR 106

Query: 65  FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
            IIV S+LR  +G  + PPN V++ LALF+T +VMSP LD++   G +P     +   TA
Sbjct: 107 IIIVLSLLRQALGTTTTPPNQVLVGLALFLTLFVMSPVLDKAYTDGYKPFSEGTVPMETA 166

Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
           + R   PF  FM   TRE DL+LF  ++H++     +   + +   +L+PSF+ SEL+  
Sbjct: 167 VSRGLAPFKTFMLRQTRESDLALFARISHAA----PMQGPEDVPLSLLVPSFVTSELKTG 222

Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           F+IGF I +PFLIIDM+VA+++M+MGMMM+ P +ISLPFK++ FVL+DGW LL+ +L +S
Sbjct: 223 FQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATISLPFKLMLFVLVDGWQLLLGSLAQS 282

Query: 245 FI 246
           F+
Sbjct: 283 FV 284


>gi|322421721|ref|YP_004200944.1| flagellar biosynthetic protein FliP [Geobacter sp. M18]
 gi|320128108|gb|ADW15668.1| flagellar biosynthetic protein FliP [Geobacter sp. M18]
          Length = 252

 Score =  198 bits (504), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 96/217 (44%), Positives = 150/217 (69%), Gaps = 9/217 (4%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           PAD+S+   +++ F + T++S+AP LL+M T F R ++V S LR+ +G    P N +++ 
Sbjct: 43  PADVSV---VLQIFFVMTVISLAPSLLMMTTSFTRIVVVLSFLRSALGTQQAPSNQIVVG 99

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           L+LF+TF++M+P   +     +QP   N IT+  A++R   P   FM +  REKDL+LF+
Sbjct: 100 LSLFLTFFIMAPVWQQVNTQALQPYKANTITQEEALKRGVAPLRKFMLSQVREKDLALFI 159

Query: 150 DMAHSSHRNTDITKN-DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
           +++          KN D I    LIP++M+SEL+ +F+IGFL+ +PFL++DM+VA+++M+
Sbjct: 160 NLSKLPR-----PKNADDIPTMTLIPAYMVSELKTAFQIGFLVFIPFLVLDMVVASVLMS 214

Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MGMMMLPP  ISLPFK++ FVL+DGW L++ +LVKSF
Sbjct: 215 MGMMMLPPVMISLPFKILLFVLVDGWGLVIGSLVKSF 251


>gi|302384102|ref|YP_003819925.1| flagellar biosynthetic protein FliP [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194730|gb|ADL02302.1| flagellar biosynthetic protein FliP [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 325

 Score =  198 bits (503), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 99/219 (45%), Positives = 151/219 (68%), Gaps = 4/219 (1%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
           +++     ++  +V+  G+ T+LS+AP ++IM T F R I+V S+LRT +GM   PPN V
Sbjct: 104 LDLGTGAGLTERVVQLVGLMTVLSLAPSIVIMTTSFVRIIVVLSLLRTALGMQQSPPNAV 163

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           ++SLALF++  VM+PT   + + GI+PLM+ Q+    A    +EP   FM     + DL+
Sbjct: 164 LVSLALFLSAIVMAPTWQDAYDSGIRPLMDQQMELPQAFDLASEPVKTFMLAQVDQGDLA 223

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
           LF  ++    R    T+   +  R++ P+FMISEL+++FEIGFL+ +PFL+ID++VA+++
Sbjct: 224 LFTRLS----RIEAPTQTVDLPLRVVTPAFMISELKKAFEIGFLLFVPFLVIDLVVASVL 279

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+MGMMMLPP  ISLPFK+IFFVL+DGW L+  +LV+SF
Sbjct: 280 MSMGMMMLPPVVISLPFKLIFFVLVDGWRLVAGSLVESF 318


>gi|118581840|ref|YP_903090.1| flagellar biosynthesis protein FliP [Pelobacter propionicus DSM
           2379]
 gi|118504550|gb|ABL01033.1| flagellar biosynthetic protein FliP [Pelobacter propionicus DSM
           2379]
          Length = 257

 Score =  198 bits (503), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 104/210 (49%), Positives = 144/210 (68%), Gaps = 6/210 (2%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           T  ++ F + TILS+AP LLIM T F R ++V S LRT MG    P N VI+ L++F+TF
Sbjct: 52  TTTIQIFFLLTILSLAPGLLIMTTAFTRIVVVLSFLRTAMGTQGAPSNQVILGLSMFLTF 111

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           ++MSP   +      QP    QI++T AI R   P   FM + TREKDL+LF+ ++    
Sbjct: 112 FIMSPVWQQINNEAYQPWKAQQISQTIAIDRAIMPVRRFMLSQTREKDLALFVSLS---- 167

Query: 157 RNTDITKN-DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
            N    KN + I    +IP+FMISELR +F+IGFLI +PF+++DM+VA+++M+MGMMMLP
Sbjct: 168 -NLPRPKNANDIPTLTIIPAFMISELRTAFQIGFLIYIPFIVVDMVVASVLMSMGMMMLP 226

Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           P  ISLPFK++ FVL+DGW L++ +LVKSF
Sbjct: 227 PVMISLPFKILLFVLVDGWGLVISSLVKSF 256


>gi|77918770|ref|YP_356585.1| flagellar biosynthesis protein FliP [Pelobacter carbinolicus DSM
           2380]
 gi|77544853|gb|ABA88415.1| flagellar biosynthetic protein FliP [Pelobacter carbinolicus DSM
           2380]
          Length = 248

 Score =  198 bits (503), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 99/201 (49%), Positives = 141/201 (70%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           I T+LS+AP +L+M T F R  +V S LR  MG   +PPN VII L+LF+TF+VMSP  +
Sbjct: 49  IMTVLSVAPAILLMTTAFIRLAVVLSFLRQAMGTQQMPPNQVIIGLSLFLTFFVMSPVFN 108

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +  +  +QP +  +I +  A+    EP   FM + T E +LSL M++  S H   D    
Sbjct: 109 QINDQAVQPYLTQKIDQKQALTLAVEPMRQFMFSQTTESELSLLMEI--SGH--PDPAGK 164

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           + +    LIP+FM+SEL+R+F+IGF+I +PFL+IDMIVA+++M+MGMMMLPP  ISLPFK
Sbjct: 165 EDVPTLTLIPAFMLSELKRAFQIGFMIYIPFLVIDMIVASVLMSMGMMMLPPIIISLPFK 224

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW+L+V +LV+SF
Sbjct: 225 LLLFVLVDGWTLIVGSLVQSF 245


>gi|313673292|ref|YP_004051403.1| flagellar biosynthetic protein flip [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312940048|gb|ADR19240.1| flagellar biosynthetic protein FliP [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 244

 Score =  198 bits (503), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 102/217 (47%), Positives = 150/217 (69%), Gaps = 7/217 (3%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P D++++  I+    + TILSIAP +LIM+T F R IIVFS LR+ MG    PPN V+I 
Sbjct: 35  PKDVAVTLQIIF---LITILSIAPAILIMMTSFTRIIIVFSFLRSAMGTQQTPPNQVLIG 91

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           LALF+TF++MSP      +  + P ++ +I  T A++   +P   FM  NTR+KD+  F+
Sbjct: 92  LALFLTFFIMSPVFSEMNKNALAPYLDGKIAFTDALKEAKKPLRKFMLENTRKKDIMTFL 151

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
            ++ S    T     D I   +L+P+F+ SEL+ +FEIGFL+ LPFLIID +V++++++M
Sbjct: 152 QVSKSPMPKT----VDDIPDMVLLPAFVTSELQTAFEIGFLLFLPFLIIDFVVSSVLLSM 207

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           GMMMLPP  IS+PFK++ FVL+DGW+L+V +LVKSF+
Sbjct: 208 GMMMLPPVMISMPFKILLFVLVDGWNLIVMSLVKSFM 244


>gi|157692315|ref|YP_001486777.1| flagellar biosynthesis protein FliP [Bacillus pumilus SAFR-032]
 gi|157681073|gb|ABV62217.1| flagellar biosynthesis protein FliP [Bacillus pumilus SAFR-032]
          Length = 221

 Score =  198 bits (503), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 101/222 (45%), Positives = 153/222 (68%), Gaps = 7/222 (3%)

Query: 25  DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
           D+ N     +IST  VR   + T+ S+AP +LI++TCF R +IV S +RT +   S+PPN
Sbjct: 6   DLFNSSGAGNISTS-VRLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATNSMPPN 64

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
            V++ LALF+TF++M+PT     +  + PL+N+ IT   A ++   P   FM  +TR+KD
Sbjct: 65  QVLVGLALFLTFFIMAPTFSEINKEALTPLLNDDITLNQAYEKAEVPIKEFMSKHTRQKD 124

Query: 145 LSLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVA 203
           L+LF+     S+   D  ++   I    ++P+F ISEL+ +F+IGF+I +PFLIIDM+VA
Sbjct: 125 LALFL-----SYAKMDTPESIKDIPLTAMVPAFAISELKTAFQIGFMIFIPFLIIDMVVA 179

Query: 204 TIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +++M+MGMMMLPP  ISLPFK++ FVL+DGW L+V++L++SF
Sbjct: 180 SVLMSMGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLLQSF 221


>gi|56695119|ref|YP_165466.1| flagellar biosynthesis protein FliP [Ruegeria pomeroyi DSS-3]
 gi|56676856|gb|AAV93522.1| flagellar biosynthetic protein FliP [Ruegeria pomeroyi DSS-3]
          Length = 247

 Score =  198 bits (503), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 98/240 (40%), Positives = 153/240 (63%), Gaps = 4/240 (1%)

Query: 8   ALFLVTPELVFAKSSLHDV-MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
           A+ L+T  ++    +  D+ +++    S+S   ++   + T+LS+AP L IM+TCFP  +
Sbjct: 10  AITLLTGAMLAGPVAAQDISLSLGEGGSVSARTIQLILLITVLSLAPGLAIMITCFPFLV 69

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
            V +ILR G+G+   PPN++I+SLALF+T++VM P    +   GI P+M  ++    A++
Sbjct: 70  TVLAILRQGIGLQQSPPNMLIVSLALFLTYFVMEPVFTEAWTTGIAPMMAEELALEPALE 129

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           +   PF  FM       D   F  MA+       +T        +L+PSFM+SE+ R+F+
Sbjct: 130 KAIAPFKAFMAARL---DADTFFAMANLRPDGAALTATPEAPLSVLVPSFMLSEIARAFQ 186

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           IGFL+ LPFLIID++VA ++M+MGMMM+PP ++SLPFK+ FFVL DGWSL+   LV+S++
Sbjct: 187 IGFLVFLPFLIIDLVVAAVLMSMGMMMVPPATVSLPFKLAFFVLADGWSLIASALVRSYM 246


>gi|254433683|ref|ZP_05047191.1| flagellar biosynthetic protein FliP [Nitrosococcus oceani AFC27]
 gi|207090016|gb|EDZ67287.1| flagellar biosynthetic protein FliP [Nitrosococcus oceani AFC27]
          Length = 243

 Score =  198 bits (503), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 97/209 (46%), Positives = 145/209 (69%), Gaps = 4/209 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           T  ++  G+ T+L++ P  ++++T F R I+VFSILR  +G+   P + ++I LALF+TF
Sbjct: 35  TVTLQILGLMTVLTLLPAAVMVMTSFTRIIVVFSILRQALGLAQTPSSQILIGLALFLTF 94

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           ++MSP LD++ + G++P    +I+ T A+ RV EPF  FM   TRE DL LF   A  S 
Sbjct: 95  FIMSPVLDKAYQEGVKPYFQEEISVTDALARVREPFHHFMIAQTRETDLKLF---AEISG 151

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
           R       + + + +L+P+F+ SEL+ +F+IGFL+ +PFLIID++VA+++MAMGMMML P
Sbjct: 152 REA-FESPEQVPFSLLVPAFITSELKTAFQIGFLLFIPFLIIDLVVASVLMAMGMMMLSP 210

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             +SLPFK++ FVLIDGWSLL+  L  SF
Sbjct: 211 MLVSLPFKLLLFVLIDGWSLLMGTLASSF 239


>gi|291280091|ref|YP_003496926.1| flagellar transport protein FliP [Deferribacter desulfuricans SSM1]
 gi|290754793|dbj|BAI81170.1| flagellar transport protein FliP [Deferribacter desulfuricans SSM1]
          Length = 246

 Score =  197 bits (502), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 97/199 (48%), Positives = 141/199 (70%), Gaps = 4/199 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           TIL++AP +L+MVT F R IIVFS LR+ +G    PPN V+I LALF+TF++MSP L+  
Sbjct: 51  TILTLAPAILLMVTSFTRLIIVFSFLRSALGTQQSPPNQVLIGLALFLTFFIMSPVLNDM 110

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
            +  +QP M+ ++  T A+    +P   F+  NTR+K+L  F++++      T     D 
Sbjct: 111 YKNAVQPYMDGKLNFTQALVEAKKPLRKFLLKNTRKKELLTFIEISKVQRPKTP----DD 166

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
           I   +LIP+F+ SEL+ +FEIGFL+ LPFL+ID +VA+++++MGMMMLPP  ISLPFK++
Sbjct: 167 IPDSVLIPAFITSELQTAFEIGFLLFLPFLVIDFVVASVLLSMGMMMLPPVMISLPFKIL 226

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FVL+DGW L+V ++VKSF
Sbjct: 227 LFVLVDGWGLIVGSMVKSF 245


>gi|288553049|ref|YP_003424984.1| flagellar biosynthesis protein FliP [Bacillus pseudofirmus OF4]
 gi|288544209|gb|ADC48092.1| flagellar biosynthesis protein FliP [Bacillus pseudofirmus OF4]
          Length = 234

 Score =  197 bits (502), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 97/201 (48%), Positives = 141/201 (70%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T+LS+AP +LI++T F R +IV S +R G+   S+PPN V+I LALF+TF++M+P   
Sbjct: 37  VLTVLSLAPGILILMTSFTRIVIVLSFVRQGLATQSMPPNQVLIGLALFLTFFIMAPIFA 96

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              E  + P +  ++T+  A+++ A P   FM  +TREKDL+LFM  A      +     
Sbjct: 97  EVNEQALTPFLEGELTQEEALEQAAVPMKEFMAQHTREKDLALFMGYAGMDRPES----L 152

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D I    LIP+F ISEL+ +F+IGFLI +PFL+IDMIVA+++M+MGMMMLPP  I+LPFK
Sbjct: 153 DDIPLTALIPAFAISELKTAFQIGFLIFVPFLVIDMIVASVLMSMGMMMLPPVMIALPFK 212

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW L+V++L+ SF
Sbjct: 213 ILLFVLVDGWYLIVQSLLLSF 233


>gi|32266191|ref|NP_860223.1| flagellar biosynthesis protein FliP [Helicobacter hepaticus ATCC
           51449]
 gi|32262241|gb|AAP77289.1| flagellar basal body protein FliP [Helicobacter hepaticus ATCC
           51449]
          Length = 265

 Score =  197 bits (502), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 110/242 (45%), Positives = 159/242 (65%), Gaps = 19/242 (7%)

Query: 19  AKSSLHDVMNIP-------ADLSIS-----TWIVRTFGI---FTILSIAPILLIMVTCFP 63
           A SS+  V +IP        DLS++     T +V T  I    T+L IAP L++++T F 
Sbjct: 27  APSSIPSVPSIPNNPILPSVDLSLTAPKEPTELVATLNIVLIITLLVIAPSLVLVMTSFT 86

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
           R +IVF+ LRT +G    PP  V++SLAL +TF++M P   +S E+GI+P    +I+   
Sbjct: 87  RIVIVFAFLRTALGTQQSPPTQVLVSLALILTFFIMEPVATKSYEVGIKPYAEKKISYDE 146

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
           A +R   PF  FM  NTREKDL+LF  +    +  +    ND +   +L+P+FMISEL+ 
Sbjct: 147 AFERAIVPFKDFMIKNTREKDLALFFRIRQLENPQS---VND-VPLTVLLPAFMISELKT 202

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
           +F IGFL+ LPFL+IDM++++++MAMGMMMLPP  ISLPFK++ F+L+DGW+LL+ NLV+
Sbjct: 203 AFWIGFLLYLPFLVIDMVISSVLMAMGMMMLPPVMISLPFKILVFILVDGWNLLIGNLVQ 262

Query: 244 SF 245
            F
Sbjct: 263 GF 264


>gi|77165627|ref|YP_344152.1| flagellar biosynthesis protein FliP [Nitrosococcus oceani ATCC
           19707]
 gi|76883941|gb|ABA58622.1| Flagellar transport protein FliP [Nitrosococcus oceani ATCC 19707]
          Length = 262

 Score =  197 bits (502), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 97/209 (46%), Positives = 145/209 (69%), Gaps = 4/209 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           T  ++  G+ T+L++ P  ++++T F R I+VFSILR  +G+   P + ++I LALF+TF
Sbjct: 54  TVTLQILGLMTVLTLLPAAVMVMTSFTRIIVVFSILRQALGLAQTPSSQILIGLALFLTF 113

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           ++MSP LD++ + G++P    +I+ T A+ RV EPF  FM   TRE DL LF   A  S 
Sbjct: 114 FIMSPVLDKAYQEGVKPYFQEEISVTDALARVREPFHHFMIAQTRETDLKLF---AEISG 170

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
           R       + + + +L+P+F+ SEL+ +F+IGFL+ +PFLIID++VA+++MAMGMMML P
Sbjct: 171 REA-FESPEQVPFSLLVPAFITSELKTAFQIGFLLFIPFLIIDLVVASVLMAMGMMMLSP 229

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             +SLPFK++ FVLIDGWSLL+  L  SF
Sbjct: 230 MLVSLPFKLLLFVLIDGWSLLMGTLASSF 258


>gi|118474799|ref|YP_891929.1| flagellar biosynthesis protein FliP [Campylobacter fetus subsp.
           fetus 82-40]
 gi|118414025|gb|ABK82445.1| flagellar biosynthetic protein FliP [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 244

 Score =  197 bits (502), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 102/201 (50%), Positives = 140/201 (69%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T+L++AP L+ ++T F R IIVFS LR  MG   +PP  V+ISLAL +TF++M P   
Sbjct: 47  VLTLLALAPSLIFVMTSFLRLIIVFSFLRQAMGTQQMPPTNVLISLALILTFFIMEPVAK 106

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +S   GI+P +  +I    A    A+PF  FM  NTREKDL+LF  +    + NT     
Sbjct: 107 QSYNEGIKPYLEEKIGYQDAFALGAKPFKEFMVRNTREKDLALFYRIRALPNPNTV---- 162

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D I + I  P+F+ISEL+ +FEIGFL+ LPFL+IDM+V++++M+MGMMMLPP  ISLPFK
Sbjct: 163 DDIPFTIAAPAFIISELKTAFEIGFLLYLPFLVIDMVVSSVLMSMGMMMLPPVMISLPFK 222

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW+LL+ NLV SF
Sbjct: 223 LLIFVLVDGWNLLIGNLVASF 243


>gi|238796941|ref|ZP_04640445.1| Flagellar biosynthetic protein fliP [Yersinia mollaretii ATCC
           43969]
 gi|238719201|gb|EEQ11013.1| Flagellar biosynthetic protein fliP [Yersinia mollaretii ATCC
           43969]
          Length = 245

 Score =  197 bits (502), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 96/206 (46%), Positives = 142/206 (68%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T  + T L+  P +L+M+T F R IIV  +LR  +G  S PPN V++ LALF+TFYVM
Sbjct: 42  VQTLVLLTSLTFLPAILLMMTGFTRIIIVLGLLRNALGTPSTPPNQVLLGLALFLTFYVM 101

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP  ++  +   QPL  ++I+  TA++R  +P   FM   TRE DL+L+  MA    +  
Sbjct: 102 SPVFNQIYKEAWQPLSEDKISMETALERGVQPLRTFMLEQTRETDLALYTRMA----KEE 157

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           +    D +  RIL+P+F+ SEL+  F+IGF + +PFLIID++VA+++MA+GMMM+PP +I
Sbjct: 158 NFQSQDDVPLRILLPAFVTSELKTGFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATI 217

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 218 SLPFKLMLFVLVDGWQLLMGSLAQSF 243


>gi|320354332|ref|YP_004195671.1| flagellar biosynthetic protein FliP [Desulfobulbus propionicus DSM
           2032]
 gi|320122834|gb|ADW18380.1| flagellar biosynthetic protein FliP [Desulfobulbus propionicus DSM
           2032]
          Length = 246

 Score =  197 bits (502), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 95/216 (43%), Positives = 149/216 (68%), Gaps = 7/216 (3%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           PA++S +   ++   + TIL++AP +L+M T F R +IV S +R  MG  + PPN V++ 
Sbjct: 37  PAEVSTA---LQALLVLTILTVAPAILLMTTAFTRIVIVLSFVRQAMGTQNTPPNQVLLG 93

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           LALF+TF+VM+P+L+   +  +QP +  +IT+  A++R  E    FM +  +E +L LF+
Sbjct: 94  LALFLTFFVMAPSLNAINDQALQPYIQEKITQQQALERSMEVMRDFMFSQVQESELQLFI 153

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
           D+               +   ILIP+FM+SEL+R+F++GF+I +PFL+IDM+V++++M+M
Sbjct: 154 DITKEEQP----ADKKAVSSSILIPAFMLSELKRAFQMGFMIYVPFLVIDMLVSSVLMSM 209

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMMLPP  ISLPFK++ FVL+DGW L+V +L+KSF
Sbjct: 210 GMMMLPPIVISLPFKLLLFVLVDGWQLVVGSLMKSF 245


>gi|107021595|ref|YP_619922.1| flagellar biosynthesis protein FliP [Burkholderia cenocepacia AU
           1054]
 gi|116688061|ref|YP_833684.1| flagellar biosynthesis protein FliP [Burkholderia cenocepacia
           HI2424]
 gi|170731411|ref|YP_001763358.1| flagellar biosynthesis protein FliP [Burkholderia cenocepacia
           MC0-3]
 gi|254246638|ref|ZP_04939959.1| Flagellar biosynthesis pathway, component FliP [Burkholderia
           cenocepacia PC184]
 gi|105891784|gb|ABF74949.1| flagellar biosynthetic protein FliP [Burkholderia cenocepacia AU
           1054]
 gi|116646150|gb|ABK06791.1| flagellar biosynthetic protein FliP [Burkholderia cenocepacia
           HI2424]
 gi|124871414|gb|EAY63130.1| Flagellar biosynthesis pathway, component FliP [Burkholderia
           cenocepacia PC184]
 gi|169814653|gb|ACA89236.1| flagellar biosynthetic protein FliP [Burkholderia cenocepacia
           MC0-3]
          Length = 253

 Score =  197 bits (502), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 97/237 (40%), Positives = 154/237 (64%), Gaps = 7/237 (2%)

Query: 12  VTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIV 68
           + P L +A+++     N    P   +  +  V+T  + T+LS  P +L+M+T F R IIV
Sbjct: 20  LAPALAYAQANGLPAFNASPGPHGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTRIIIV 79

Query: 69  FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128
            S+LR  +G  + PPN V++ LA+F+TF+VMSP LDR+   G +P  +  +    A+QR 
Sbjct: 80  LSLLRQALGTATTPPNQVLVGLAMFLTFFVMSPVLDRAYNDGYKPFSDGSMPMEQAVQRG 139

Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188
             PF  FM   TRE DL+LF  ++ ++     +   + +   +L+P+F+ SEL+  F+IG
Sbjct: 140 VAPFKTFMLKQTRETDLALFAKISKAA----PMQGPEDVPLSLLVPAFVTSELKTGFQIG 195

Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           F + +PFLIIDM+VA+++M+MGMMM+ P+++SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 196 FTVFIPFLIIDMVVASVLMSMGMMMVSPSTVSLPFKLMLFVLVDGWQLLIGSLAQSF 252


>gi|311030115|ref|ZP_07708205.1| flagellar biosynthesis protein FliP [Bacillus sp. m3-13]
          Length = 221

 Score =  197 bits (501), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 97/199 (48%), Positives = 144/199 (72%), Gaps = 4/199 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T+ S+AP +LI++T F R IIV S +RT +   S+PPN V+I LALF+TF++M+PT  + 
Sbjct: 27  TVFSLAPAILILMTSFTRIIIVLSFVRTSLATQSMPPNQVLIGLALFLTFFIMAPTFSQV 86

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
            +  +QPL N +IT   A ++ + P   FM  +TR+KDL+LF+D A    R   I   + 
Sbjct: 87  NDQALQPLFNEEITLDEAYEKASIPLKEFMSKHTRQKDLALFIDYA-GMERPESI---ED 142

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
           I   +L+P+F ISEL+ +F+IGF+I +PFL+IDM+VA+++M+MGMMMLPP  ISLPFK++
Sbjct: 143 IPLTVLVPAFAISELKTAFQIGFMIFIPFLVIDMVVASVLMSMGMMMLPPVMISLPFKIL 202

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FVL+DGW L+V++L+ +F
Sbjct: 203 LFVLVDGWYLIVKSLLLTF 221


>gi|293605018|ref|ZP_06687413.1| flagellar biosynthetic protein FliP [Achromobacter piechaudii ATCC
           43553]
 gi|292816587|gb|EFF75673.1| flagellar biosynthetic protein FliP [Achromobacter piechaudii ATCC
           43553]
          Length = 263

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 102/234 (43%), Positives = 149/234 (63%), Gaps = 6/234 (2%)

Query: 14  PELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
           P  V A+++L  +   P      T+ +  +T  + T LS  P  L+M+T F R IIV  +
Sbjct: 32  PAGVVAQATLPALTATPGPNGSETYSLSMQTMLLMTSLSFLPAALLMMTGFTRIIIVLGL 91

Query: 72  LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
           LR+ MG    PPN V+I LALF+TFY MSP  D+      +PL    I   TA++R A P
Sbjct: 92  LRSAMGTAMSPPNHVLIGLALFLTFYTMSPVFDKIYADAYKPLSEGSIQFETAVERAAGP 151

Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
              FM + TRE DLSLF ++A    +   +     +  RIL+P+F+ SEL+ +F+IGF I
Sbjct: 152 LRTFMLHQTRENDLSLFANLA----KQPALEDPSQVPLRILVPAFITSELKTAFQIGFTI 207

Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            +PFLIID++VA+++MA+GMMM+PP +++LPFK++ FVL DGW+LL+ +L +SF
Sbjct: 208 FIPFLIIDLVVASVLMALGMMMVPPVTVALPFKLMLFVLADGWNLLMGSLAQSF 261


>gi|149182519|ref|ZP_01860992.1| flagellar biosynthesis protein P [Bacillus sp. SG-1]
 gi|148849779|gb|EDL63956.1| flagellar biosynthesis protein P [Bacillus sp. SG-1]
          Length = 221

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 97/206 (47%), Positives = 145/206 (70%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+   +FT+LSIAP +LI++T F R +IV S +RT +    +PPN V++ L+LF+TF++M
Sbjct: 20  VKLLLLFTVLSIAPGILILMTSFTRIVIVLSFVRTSLATQQMPPNQVLVGLSLFLTFFIM 79

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +PT     E  + PL N +I    A +  A PF  FM  +TR+KDL LF++ +  + R  
Sbjct: 80  APTFQEVNETALTPLFNEEINLEQAYENAAGPFKDFMSKHTRQKDLELFLNYS-GAERPE 138

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            I   D I    L+P+F +SE++ +F+IGF+I +PFL+IDM+VA+I+M+MGMMMLPP  I
Sbjct: 139 SI---DDIPLTALVPAFALSEIKTAFQIGFMIFIPFLVIDMVVASILMSMGMMMLPPVMI 195

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW L+V++L++SF
Sbjct: 196 SLPFKILLFVLVDGWYLVVKSLLQSF 221


>gi|260598457|ref|YP_003211028.1| flagellar biosynthetic protein fliP [Cronobacter turicensis z3032]
 gi|260217634|emb|CBA31933.1| Flagellar biosynthetic protein fliP [Cronobacter turicensis z3032]
          Length = 223

 Score =  197 bits (500), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 96/206 (46%), Positives = 142/206 (68%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T    T L+  P +L+M+T F R IIVF +LR  +G  S PPN V++ LALF+TF++M
Sbjct: 20  VQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIM 79

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP +D+      QP   N+I+   A+ R A+P   FM   TRE DL+LF  +A++     
Sbjct: 80  SPVIDKIYSDAYQPFTENKISMEVALDRGAQPLREFMLRQTREADLALFAKLANTQ---- 135

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            I   + +  RIL+P+++ SEL+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP SI
Sbjct: 136 PIQGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASI 195

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           +LPFK++ FVL+DGW LLV +L +SF
Sbjct: 196 ALPFKLMLFVLVDGWQLLVGSLAQSF 221


>gi|189426339|ref|YP_001953516.1| flagellar biosynthesis protein FliP [Geobacter lovleyi SZ]
 gi|189422598|gb|ACD96996.1| flagellar biosynthetic protein FliP [Geobacter lovleyi SZ]
          Length = 256

 Score =  197 bits (500), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 94/216 (43%), Positives = 146/216 (67%), Gaps = 7/216 (3%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           PA+++ +   ++ F + T+LS+AP LLIM T F R ++V S LRT +G    P N +I++
Sbjct: 47  PAEVATT---IQIFLLLTVLSLAPSLLIMTTSFTRIVVVLSFLRTALGTQQAPSNQIILA 103

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           L+LF+TF++M+P   +      QP     +++  A ++  +P   FM + TREKDL LF+
Sbjct: 104 LSLFLTFFIMTPVWQQVNRDAYQPYKAGTLSQEQAFEKAVQPVRKFMLSQTREKDLGLFV 163

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
            ++  +         D I    ++P+FMISELR +F+IGFLI +PF+++DM+VA+++M+M
Sbjct: 164 SLSKQARPK----NADDIPTLTIVPAFMISELRTAFQIGFLIYIPFIVVDMVVASVLMSM 219

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMMLPP  ISLPFK++ FVL+DGW L++ +LVKSF
Sbjct: 220 GMMMLPPVMISLPFKILLFVLVDGWGLVISSLVKSF 255


>gi|326791526|ref|YP_004309347.1| flagellar biosynthetic protein FliP [Clostridium lentocellum DSM
           5427]
 gi|326542290|gb|ADZ84149.1| flagellar biosynthetic protein FliP [Clostridium lentocellum DSM
           5427]
          Length = 261

 Score =  197 bits (500), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 96/201 (47%), Positives = 138/201 (68%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           I TI+S+AP +LIM+T F R II    +R+ +G  ++PPN +++ LALF+TF+VMSP   
Sbjct: 60  IITIISLAPSILIMMTSFLRIIIALHFVRSAIGTQTMPPNQILVGLALFLTFFVMSPVFM 119

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +     I PL   QIT+  AI+R  +P   FM   TR++D++LFMD+AH      D    
Sbjct: 120 QIKTNAIDPLEKQQITQEQAIERGIQPLKEFMLKQTRDEDITLFMDLAHLEPYTEDTDLV 179

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
             +   ++IP+F+ISELR  F IGFL+ +PF+IIDM+VA  +M+MGMMMLPP  ISLPFK
Sbjct: 180 KEMPLHVIIPAFIISELRAGFIIGFLVYIPFIIIDMVVAATLMSMGMMMLPPAMISLPFK 239

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           V+ F+L+DGW+L +  L+++F
Sbjct: 240 VLLFILVDGWNLFIGQLIQTF 260


>gi|157161419|ref|YP_001458737.1| flagellar biosynthesis protein FliP [Escherichia coli HS]
 gi|157067099|gb|ABV06354.1| flagellar biosynthetic protein FliP [Escherichia coli HS]
          Length = 245

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 104/239 (43%), Positives = 158/239 (66%), Gaps = 9/239 (3%)

Query: 9   LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66
           L+LVTP L FA+  L  + + P      +W   V+T    T L+  P +L+M+T F R I
Sbjct: 12  LWLVTP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +I+   A++
Sbjct: 69  IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           + A+P   FM   TRE DL LF  +A++      +   + +  RIL+P+++ISEL+ +F+
Sbjct: 129 KGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVISELKTAFQ 184

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243


>gi|239817147|ref|YP_002946057.1| flagellar biosynthetic protein FliP [Variovorax paradoxus S110]
 gi|239803724|gb|ACS20791.1| flagellar biosynthetic protein FliP [Variovorax paradoxus S110]
          Length = 253

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 99/227 (43%), Positives = 147/227 (64%), Gaps = 6/227 (2%)

Query: 21  SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
             L  + + P      TW   V+T  + T LS  P LL+ +T F R +IV  +LRT +G 
Sbjct: 29  QGLPGLTSTPGPGGSQTWSLSVQTLVMLTSLSFLPALLLSMTSFTRILIVLGLLRTAIGT 88

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
            S PPN +++ L+LF+TF+VM+P  D+  +   +P   N+IT   A+++   PF  FM  
Sbjct: 89  QSSPPNQILVGLSLFLTFFVMAPVFDKVHDEAYKPFSENKITAEKALEKGIAPFKSFMLK 148

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
            TRE DL+LF  +A    +  D+   + +  RIL+PSF+ISEL+ +F+IGF I +PFLII
Sbjct: 149 QTRENDLALFARLA----KIPDMQGPEEVPLRILLPSFVISELKTAFQIGFTIFIPFLII 204

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           D++VA+++M+MGMMM+PP SI+LPFK++ FV+ DGW LL+  L +SF
Sbjct: 205 DLVVASVLMSMGMMMVPPASIALPFKLMLFVMADGWQLLIGALAQSF 251


>gi|21672367|ref|NP_660434.1| type III secretion system protein [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25008468|sp|Q8KA37|FLIP_BUCAP RecName: Full=Flagellar biosynthetic protein fliP
 gi|21622972|gb|AAM67645.1| flagellar biosynthetic protein FliP [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 379

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 103/213 (48%), Positives = 142/213 (66%), Gaps = 8/213 (3%)

Query: 36  STWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
            TW   V+T    T L+  P  L+M+T F R IIVF +LR  +G    PPN +++ LALF
Sbjct: 170 QTWSLPVQTLIFLTSLTFLPAFLLMMTSFTRIIIVFGLLRNALGTPYAPPNQILLGLALF 229

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           +TF++MSPT D+  +    P    +I    AI + A P   FM N TR  DL LF  +AH
Sbjct: 230 LTFFIMSPTFDQVYKEAYLPFSQEKINMDEAIIKGAVPLKKFMLNQTRNSDLELFSKLAH 289

Query: 154 -SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
            SS++N      D I  RIL+PSF+ SEL+ +F+IGF I +PFLIID++VA+++MA+GMM
Sbjct: 290 ISSYKN-----KDEIPMRILLPSFITSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMM 344

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+PP++ISLPFK++ FVL+DGW LLV +L +SF
Sbjct: 345 MVPPSTISLPFKLMLFVLVDGWQLLVTSLSQSF 377


>gi|304404260|ref|ZP_07385922.1| flagellar biosynthetic protein FliP [Paenibacillus curdlanolyticus
           YK9]
 gi|304347238|gb|EFM13070.1| flagellar biosynthetic protein FliP [Paenibacillus curdlanolyticus
           YK9]
          Length = 256

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 95/202 (47%), Positives = 145/202 (71%), Gaps = 6/202 (2%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T+LS+AP +L+++T F R +IV   +RT +G   +PPN V+I LA+F+TF+VM+PTL 
Sbjct: 57  LLTVLSVAPAILVLMTSFTRIVIVLGFVRTSLGTQQMPPNQVLIGLAMFLTFFVMAPTLS 116

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +  ++ +QP +  +IT+  A  + A P   FM + TREKDL LFM      +  T+  K+
Sbjct: 117 QVNQVALQPYLKGEITQMQAFDKAAVPMKKFMFSQTREKDLLLFMK-----YTKTEKPKS 171

Query: 165 -DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
            + I   +L+P++ ISEL+ +F++GF+I +PFLIIDM+V++ +MAMGMMMLPP  ISLPF
Sbjct: 172 YEDIPITVLVPAYAISELKTAFQMGFMIFIPFLIIDMVVSSTLMAMGMMMLPPVMISLPF 231

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K++ FVL+DGW L+V++L+ SF
Sbjct: 232 KILLFVLVDGWYLIVKSLLISF 253


>gi|323527702|ref|YP_004229855.1| flagellar biosynthetic protein FliP [Burkholderia sp. CCGE1001]
 gi|323384704|gb|ADX56795.1| flagellar biosynthetic protein FliP [Burkholderia sp. CCGE1001]
          Length = 277

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 100/236 (42%), Positives = 152/236 (64%), Gaps = 7/236 (2%)

Query: 14  PELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
           P L FA+++     N    P   +  +  V+T  + T+LS  P +++M+T F R IIV S
Sbjct: 46  PSLSFAQTAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTRIIIVLS 105

Query: 71  ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
           +LR  +G  + PPN V++ LALF+T +VMSP LD++   G +P     +   TA+ R   
Sbjct: 106 LLRQALGTTTTPPNQVLVGLALFLTLFVMSPVLDKAYTDGYKPFSEGTVPMETAVSRGLA 165

Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
           PF  FM   TRE DL+LF  ++H++     +   + +   +L+PSF+ SEL+  F+IGF 
Sbjct: 166 PFKTFMLRQTRESDLALFARISHAA----PMQGPEDVPLSLLVPSFVTSELKTGFQIGFT 221

Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           I +PFLIIDM+VA+++M+MGMMM+ P +ISLPFK++ FVL+DGW LL+ +L +SF+
Sbjct: 222 IFIPFLIIDMVVASVLMSMGMMMVSPATISLPFKLMLFVLVDGWQLLLGSLAQSFV 277


>gi|254418891|ref|ZP_05032615.1| flagellar biosynthetic protein FliP [Brevundimonas sp. BAL3]
 gi|196185068|gb|EDX80044.1| flagellar biosynthetic protein FliP [Brevundimonas sp. BAL3]
          Length = 266

 Score =  196 bits (498), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 95/219 (43%), Positives = 149/219 (68%), Gaps = 4/219 (1%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
           +++ +   ++  +V+  G+ T+LS+AP ++IM T F R ++V S+LRT +GM   PPN V
Sbjct: 45  IDLGSGAGLTQRVVQLVGLMTVLSLAPSIVIMTTSFVRIVVVLSLLRTALGMQQSPPNAV 104

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           ++SLALF++  VM+PT   + + GI+PL++ Q+    A    +EP   FM       DL+
Sbjct: 105 LVSLALFLSAIVMAPTWQDAYDSGIRPLLDQQMELPQAFDAASEPVKTFMLAQVDRGDLA 164

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
           LF  ++    R         +  R++ P+FMISEL+++FEIGFL+ +PFL+ID++VA+++
Sbjct: 165 LFTRLS----RVEAPANLQELPLRVVTPAFMISELKKAFEIGFLLFVPFLVIDLVVASVL 220

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+MGMMMLPP  +SLPFK+IFFVL+DGW L+  +LV+SF
Sbjct: 221 MSMGMMMLPPVVVSLPFKLIFFVLVDGWRLVAGSLVESF 259


>gi|148261126|ref|YP_001235253.1| flagellar biosynthesis protein FliP [Acidiphilium cryptum JF-5]
 gi|326404527|ref|YP_004284609.1| flagellar biosynthetic protein FliP [Acidiphilium multivorum
           AIU301]
 gi|146402807|gb|ABQ31334.1| flagellar biosynthetic protein FliP [Acidiphilium cryptum JF-5]
 gi|325051389|dbj|BAJ81727.1| flagellar biosynthetic protein FliP [Acidiphilium multivorum
           AIU301]
          Length = 253

 Score =  196 bits (498), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 89/207 (42%), Positives = 142/207 (68%), Gaps = 4/207 (1%)

Query: 39  IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
           +++   +  ++S+AP LL+M+T F R +IV S+LRT +G  + PPN V+I LALF+T++V
Sbjct: 46  LIQLIALIGVISLAPSLLVMLTAFTRIVIVLSLLRTALGTQTTPPNSVLIGLALFLTYFV 105

Query: 99  MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
           M+P   +S   G+ P+    +     ++  A PF  F+ +N R  D+ +F+ +AH     
Sbjct: 106 MAPVFSQSWHTGLLPMTQGDVGTLEGLKLAAAPFHTFLADNARPADVRVFLSLAHIKPP- 164

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
                   + +R LIP F++ ELRR FE+GF+I LPF++ID+++++I+M++GMMMLPPT+
Sbjct: 165 ---ANMQDVPWRALIPGFVVGELRRGFEMGFMIFLPFMVIDIVISSILMSLGMMMLPPTA 221

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +SLPFK+IFFVL+DGW L+  +LV+SF
Sbjct: 222 VSLPFKIIFFVLVDGWQLVCGSLVRSF 248


>gi|156933432|ref|YP_001437348.1| flagellar biosynthesis protein FliP [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156531686|gb|ABU76512.1| hypothetical protein ESA_01250 [Cronobacter sakazakii ATCC BAA-894]
          Length = 245

 Score =  196 bits (498), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 96/206 (46%), Positives = 142/206 (68%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T    T L+  P +L+M+T F R IIVF +LR  +G  S PPN V++ LALF+TF++M
Sbjct: 42  VQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIM 101

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP +D+      QP   N+I+   A+ R A+P   FM   TRE DL+LF  +A++     
Sbjct: 102 SPVIDKIYSDAYQPFNENKISMEVALDRGAQPLREFMLRQTREADLALFAKLANTQ---- 157

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            I   + +  RIL+P+++ SEL+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP SI
Sbjct: 158 PIQGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASI 217

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           +LPFK++ FVL+DGW LLV +L +SF
Sbjct: 218 ALPFKLMLFVLVDGWQLLVGSLAQSF 243


>gi|291276476|ref|YP_003516248.1| flagellar biosynthesis protein [Helicobacter mustelae 12198]
 gi|290963670|emb|CBG39502.1| flagellar biosynthesis protein [Helicobacter mustelae 12198]
          Length = 247

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 97/201 (48%), Positives = 142/201 (70%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T+L +AP L++++T F R +IVFS LRT +G    PP  +++SLA+ +TF++M P + 
Sbjct: 50  VLTLLVLAPSLVLVMTSFTRLVIVFSFLRTALGTQQSPPTQILVSLAMVLTFFIMEPVVR 109

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
            S +  I P ++ +I+  TA  R  +PF  FM  NTREKDL+LF  +    +  T    +
Sbjct: 110 ESYQKAIVPYLDAKISYETAFDRGVQPFKDFMLKNTREKDLALFYRIRKLENPKT----S 165

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
             +    LIP+FMISEL+ +F+IGFL+ LPFL+IDM+V++I+MAMGMMMLPP  ISLPFK
Sbjct: 166 ADVSLTTLIPAFMISELKTAFQIGFLLYLPFLVIDMVVSSILMAMGMMMLPPVMISLPFK 225

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DG++LL+ NLV+SF
Sbjct: 226 ILIFVLVDGFNLLIGNLVESF 246


>gi|187478200|ref|YP_786224.1| flagellar biosynthesis protein FliP [Bordetella avium 197N]
 gi|115422786|emb|CAJ49314.1| flagellar biosynthetic protein [Bordetella avium 197N]
          Length = 255

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 103/236 (43%), Positives = 148/236 (62%), Gaps = 6/236 (2%)

Query: 12  VTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVF 69
           V P    A+++L  +   P      T+ +  +T  + T LS  P  L+M+T F R IIV 
Sbjct: 22  VMPSGAIAQATLPALTTTPGVNGSQTYSLSMQTLLLMTSLSFLPAALLMMTGFTRIIIVL 81

Query: 70  SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129
            +LR+ MG    PPN V++ +ALF+TFY MSP  D+      QPL    I   TA++R  
Sbjct: 82  GLLRSAMGTAMSPPNHVLVGIALFLTFYTMSPVFDKIYTEAYQPLSTGSIPFETALERAG 141

Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189
            P   FM + TRE DL+LF ++A+       I     +  RILIP+F+ SEL+ +F+IGF
Sbjct: 142 APLHTFMLHQTRENDLALFANLANIP----KIEDPSKVPMRILIPAFITSELKTAFQIGF 197

Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            I +PFLIID++VA+++MA+GMMM+PP ++SLPFK++ FVL DGW+LL+ +L KSF
Sbjct: 198 TIFIPFLIIDLVVASVLMALGMMMVPPVTVSLPFKLMLFVLADGWNLLLGSLAKSF 253


>gi|294636880|ref|ZP_06715210.1| flagellar biosynthetic protein FliP [Edwardsiella tarda ATCC 23685]
 gi|291089910|gb|EFE22471.1| flagellar biosynthetic protein FliP [Edwardsiella tarda ATCC 23685]
          Length = 246

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 94/206 (45%), Positives = 142/206 (68%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T    T LS  P +L+++T F R IIV  +LR  +G  S PPN V++ LALF+TF++M
Sbjct: 43  VQTLVFLTSLSFLPAVLLLMTSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFIM 102

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP LD+  +   QP    +I+  TA++R A+P   FM   TRE DL+LF  +A    +  
Sbjct: 103 SPVLDKIYQDAYQPFSEQKISMETALERGAKPLRAFMLRQTRETDLALFARLA----KQP 158

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +   + +  RIL+P+++ SEL+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP +I
Sbjct: 159 QMQGPEDVPLRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATI 218

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 219 SLPFKLMLFVLVDGWQLLLGSLAQSF 244


>gi|223040127|ref|ZP_03610407.1| flagellar biosynthetic protein FliP [Campylobacter rectus RM3267]
 gi|222878604|gb|EEF13705.1| flagellar biosynthetic protein FliP [Campylobacter rectus RM3267]
          Length = 246

 Score =  196 bits (497), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 100/195 (51%), Positives = 140/195 (71%), Gaps = 6/195 (3%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP L+ M+T F R IIVFS LR  MG   +PP+ V+ISLA+ +TF++M P   ++ E G+
Sbjct: 56  APSLVFMMTSFLRLIIVFSFLRQAMGTQQMPPSTVLISLAMVLTFFIMEPVGKQAYEAGV 115

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYR 170
           +P +  QI    A +R  +PF  FM  NTREKDL+LF+ +     RN    ++ D I   
Sbjct: 116 RPYLGEQIGYQEAFERGVKPFREFMIKNTREKDLALFLRI-----RNMPNPQSFDDIPLT 170

Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230
           +++ +FMISE++ +FEI FL+ LPFL+IDM+V++++MAMGMMMLPPT ISLPFK++ F+L
Sbjct: 171 VVMSAFMISEMKTAFEIAFLLYLPFLVIDMVVSSVLMAMGMMMLPPTMISLPFKLLIFIL 230

Query: 231 IDGWSLLVENLVKSF 245
           +DGW+LLV NLVKSF
Sbjct: 231 VDGWNLLVMNLVKSF 245


>gi|291536019|emb|CBL09131.1| flagellar biosynthetic protein FliP [Roseburia intestinalis M50/1]
 gi|291538511|emb|CBL11622.1| flagellar biosynthetic protein FliP [Roseburia intestinalis XB6B4]
          Length = 299

 Score =  196 bits (497), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 97/217 (44%), Positives = 145/217 (66%), Gaps = 11/217 (5%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           VR   + TI++++P LLIM+T + R +IV   LRT +G  + PPN ++I LALF+TF++M
Sbjct: 82  VRALLLLTIIAVSPSLLIMLTSYTRIVIVLHFLRTAIGTQTAPPNQILIGLALFLTFFIM 141

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH--- 156
            PT  +  E  IQPL N  IT   A++    P   FM    + KD+ LF+DMA  S+   
Sbjct: 142 WPTFQQINENAIQPLDNGDITIEEALKEAEVPIRQFMYGQVQRKDVKLFVDMAGDSYDID 201

Query: 157 --------RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
                     +  +  D I   I+IPSF+I ELR++F +GF+I +PF++IDM+VA+++M+
Sbjct: 202 SAALEKEYEESGQSAYDAIPMTIMIPSFIIGELRQAFIMGFVIYIPFIVIDMVVASVLMS 261

Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MGMMMLPPT+ISLPFK++ F+L DGW+L++ ++VK+F
Sbjct: 262 MGMMMLPPTTISLPFKILLFILADGWNLVIGSVVKTF 298


>gi|240145488|ref|ZP_04744089.1| flagellar biosynthetic protein FliP [Roseburia intestinalis L1-82]
 gi|257202303|gb|EEV00588.1| flagellar biosynthetic protein FliP [Roseburia intestinalis L1-82]
          Length = 299

 Score =  196 bits (497), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 97/217 (44%), Positives = 145/217 (66%), Gaps = 11/217 (5%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           VR   + TI++++P LLIM+T + R +IV   LRT +G  + PPN ++I LALF+TF++M
Sbjct: 82  VRALLLLTIIAVSPSLLIMLTSYTRIVIVLHFLRTAIGTQTAPPNQILIGLALFLTFFIM 141

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH--- 156
            PT  +  E  IQPL N  IT   A++    P   FM    + KD+ LF+DMA  S+   
Sbjct: 142 WPTFQQINENAIQPLDNGDITIEEALKEAEVPIRQFMYGQVQRKDVKLFVDMAGDSYDID 201

Query: 157 --------RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
                     +  +  D I   I+IPSF+I ELR++F +GF+I +PF++IDM+VA+++M+
Sbjct: 202 SAALEKEYEESGQSAYDAIPMTIMIPSFVIGELRQAFIMGFVIYIPFIVIDMVVASVLMS 261

Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MGMMMLPPT+ISLPFK++ F+L DGW+L++ ++VK+F
Sbjct: 262 MGMMMLPPTTISLPFKILLFILADGWNLVIGSVVKTF 298


>gi|300113613|ref|YP_003760188.1| flagellar biosynthetic protein FliP [Nitrosococcus watsonii C-113]
 gi|299539550|gb|ADJ27867.1| flagellar biosynthetic protein FliP [Nitrosococcus watsonii C-113]
          Length = 262

 Score =  196 bits (497), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 94/206 (45%), Positives = 144/206 (69%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++  G+ T+L++ P  ++++T F R I+VFSILR  +G+   P + ++I LALF+TF++M
Sbjct: 57  LQILGLMTVLTLLPAAVMVMTSFTRIIVVFSILRQALGLAQTPSSQILIGLALFLTFFIM 116

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP LD++ + G++P    +I+   A+ RV EPF  FM   TRE DL LF ++   S R  
Sbjct: 117 SPVLDKAYQEGVKPYFQEEISVADALARVREPFHHFMIAQTRETDLKLFAEI---SGREA 173

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                + + + +L+P+F+ SEL+ +F+IGFL+ +PFLIID++VA+++MAMGMMML P  +
Sbjct: 174 -FESPEQVPFSLLVPAFITSELKTAFQIGFLLFIPFLIIDLVVASVLMAMGMMMLSPMLV 232

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVLIDGWSLL+  L  SF
Sbjct: 233 SLPFKLLLFVLIDGWSLLMGTLASSF 258


>gi|311105950|ref|YP_003978803.1| flagellar biosynthetic protein FliP [Achromobacter xylosoxidans A8]
 gi|310760639|gb|ADP16088.1| flagellar biosynthetic protein FliP [Achromobacter xylosoxidans A8]
          Length = 263

 Score =  196 bits (497), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 101/234 (43%), Positives = 148/234 (63%), Gaps = 6/234 (2%)

Query: 14  PELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
           P  V A+++L  +   P      T+ +  +T  + T LS  P  L+M+T F R IIV  +
Sbjct: 32  PAGVVAQATLPALTATPGPNGSETYSLSMQTLLLMTSLSFLPAALLMMTGFTRIIIVLGL 91

Query: 72  LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
           LR+ MG    PPN V+I LALF+TFY MSP  D+      +PL    I    A++R A P
Sbjct: 92  LRSAMGTAMSPPNHVLIGLALFLTFYTMSPVFDKIYTDAYKPLSEGSIQFEAAVERAAGP 151

Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
              FM + TRE DLSLF ++A    +   +     +  RIL+P+F+ SEL+ +F+IGF I
Sbjct: 152 LRTFMLHQTRENDLSLFANLA----KQPALEDPSQVPLRILVPAFITSELKTAFQIGFTI 207

Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            +PFLIID++VA+++MA+GMMM+PP +++LPFK++ FVL DGW+LL+ +L +SF
Sbjct: 208 FIPFLIIDLVVASVLMALGMMMVPPVTVALPFKLMLFVLADGWNLLMGSLAQSF 261


>gi|302389676|ref|YP_003825497.1| flagellar biosynthetic protein FliP [Thermosediminibacter oceani
           DSM 16646]
 gi|302200304|gb|ADL07874.1| flagellar biosynthetic protein FliP [Thermosediminibacter oceani
           DSM 16646]
          Length = 254

 Score =  196 bits (497), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 99/194 (51%), Positives = 141/194 (72%), Gaps = 3/194 (1%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +LIM+T F R +IVFS +R+G+G   +PPN V+I LALF+TF+VM+P  D   +  I
Sbjct: 63  APSILIMMTSFIRIVIVFSFVRSGLGTQQIPPNQVLIGLALFITFFVMAPVFDDINKNAI 122

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           QP M  +IT   A+Q   +P   FM   TREKDL+LF+   H+  +N   T +D   Y +
Sbjct: 123 QPYMREEITTQEALQLAQKPLRDFMFRQTREKDLALFL--YHAKLQNQVRTLDDVPTY-V 179

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           LIP+F+ISEL+ +F++GF+I +PFL+IDMIVA+ +M+MGM+MLPP  ISLPFK++ FV++
Sbjct: 180 LIPAFIISELKTAFQMGFIIFVPFLVIDMIVASTLMSMGMLMLPPVMISLPFKILLFVMV 239

Query: 232 DGWSLLVENLVKSF 245
           DGW+L+V +L+ SF
Sbjct: 240 DGWNLVVSSLLSSF 253


>gi|85706151|ref|ZP_01037246.1| flagellar biosynthetic protein FliP [Roseovarius sp. 217]
 gi|85669315|gb|EAQ24181.1| flagellar biosynthetic protein FliP [Roseovarius sp. 217]
          Length = 245

 Score =  195 bits (496), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 97/220 (44%), Positives = 143/220 (65%), Gaps = 3/220 (1%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
           ++I  D S+S   ++   + T+LS+AP + IMVTCFP  + V SILR G+G+   PPN++
Sbjct: 29  LSIGDDASLSARTIQIIALITVLSLAPGIAIMVTCFPFIVTVLSILRQGIGLQQSPPNML 88

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           I+SLALF+T++VM P    +   GI+PL+  +++   A + V  PF  FM       D  
Sbjct: 89  IVSLALFLTYFVMEPVFTEAWTNGIEPLLEERLSPERATEMVIAPFRQFMLGRV---DPE 145

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
            F  MA      +           +LIPSFM+SE+ R+F+IGFL+ LPFL+ID++VA I+
Sbjct: 146 TFASMAALRPEASVTVAGSDAPLSVLIPSFMLSEIARAFQIGFLVFLPFLVIDLVVAAIL 205

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           M+MGMMM+PP  +SLPFK+ FFV+ DGW+L+ E+LVK ++
Sbjct: 206 MSMGMMMVPPAIVSLPFKLAFFVIADGWTLIAESLVKGYM 245


>gi|225850263|ref|YP_002730497.1| flagellar biosynthetic protein FliP [Persephonella marina EX-H1]
 gi|225646564|gb|ACO04750.1| flagellar biosynthetic protein FliP [Persephonella marina EX-H1]
          Length = 222

 Score =  195 bits (496), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 101/199 (50%), Positives = 138/199 (69%), Gaps = 5/199 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           TILS+AP +LI VT F R +IV S+LR  +G+   PPN VII+ +LF+TF+VM P  D  
Sbjct: 28  TILSLAPSILITVTAFVRIVIVLSLLRHALGIPQSPPNQVIIAFSLFLTFFVMKPVFDDI 87

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
               IQP +  +I +  AI+R  EP   FM  NTR++DL LF+D+A    ++      D 
Sbjct: 88  NGNAIQPYLKKEIGDMEAIERAKEPVKKFMLKNTRKEDLKLFLDIAGEKPKSP-----DE 142

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
           +    LIP+FMISE++ +FEI F+I LPFLIIDM+VA+I+M+MGMMM+PP  ISLPFK+I
Sbjct: 143 VSMVSLIPAFMISEIKTAFEIVFIIFLPFLIIDMLVASILMSMGMMMIPPMLISLPFKLI 202

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FVL DG+ LL + L++S+
Sbjct: 203 LFVLADGFELLTKALIQSY 221


>gi|295098284|emb|CBK87374.1| flagellar biosynthetic protein FliP [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 245

 Score =  195 bits (496), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 95/227 (41%), Positives = 152/227 (66%), Gaps = 6/227 (2%)

Query: 21  SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           + L  +++ P      +W   V+T    T L+  P +L+M+T F R IIVF +LR  +G 
Sbjct: 21  AQLPGLVSTPLANGGQSWSLSVQTLVFITSLTFIPAILLMMTSFTRIIIVFGLLRNALGT 80

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
            S PPN V++ LALF+TF++MSP +D+      QP   ++I+   A+++ A+P   FM  
Sbjct: 81  PSAPPNQVLLGLALFLTFFIMSPVIDKIYTEAYQPFSEDKISMQVALEKGAQPLREFMLR 140

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
            TRE DL+LF  +A++     ++   + +  RIL+P+++ SEL+ +F+IGF I +PFLII
Sbjct: 141 QTREADLALFARLANTG----ELQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLII 196

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           D+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 197 DLVIASVLMALGMMMVPPATIALPFKIMLFVLVDGWQLLVSSLAQSF 243


>gi|225375339|ref|ZP_03752560.1| hypothetical protein ROSEINA2194_00964 [Roseburia inulinivorans DSM
           16841]
 gi|225212828|gb|EEG95182.1| hypothetical protein ROSEINA2194_00964 [Roseburia inulinivorans DSM
           16841]
          Length = 273

 Score =  195 bits (496), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 98/206 (47%), Positives = 142/206 (68%), Gaps = 5/206 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+   + TILS+AP +LIM+T + R IIV   LRT +G  + PPN V+I+LALF+TF++M
Sbjct: 72  VKMLLVLTILSLAPSILIMLTSYTRIIIVLHFLRTAIGTQTAPPNQVLIALALFLTFFIM 131

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            PT  +     IQPL   +IT   A      P   FM   T+EKDL LF+D++  ++ + 
Sbjct: 132 WPTFQQINTEAIQPLDKGEITTEEAFTVAQGPIREFMYGQTQEKDLKLFVDISDETYDS- 190

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                D +    LIP+F++SELR +F IGF+I +PF++IDM+VA+++M+MGMMMLPPT+I
Sbjct: 191 ----YDDVPMTTLIPAFILSELRAAFIIGFVIYIPFIVIDMVVASVLMSMGMMMLPPTTI 246

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ F+L DGW L++ +LVK+F
Sbjct: 247 SLPFKILLFILADGWDLVIGSLVKTF 272


>gi|261340413|ref|ZP_05968271.1| flagellar biosynthetic protein FliP [Enterobacter cancerogenus ATCC
           35316]
 gi|288317505|gb|EFC56443.1| flagellar biosynthetic protein FliP [Enterobacter cancerogenus ATCC
           35316]
          Length = 245

 Score =  195 bits (496), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 95/227 (41%), Positives = 152/227 (66%), Gaps = 6/227 (2%)

Query: 21  SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           + L  +++ P      +W   V+T    T L+  P +L+M+T F R IIVF +LR  +G 
Sbjct: 21  AQLPGLISTPMAGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIIIVFGLLRNALGT 80

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
            S PPN V++ LALF+TF++MSP +D+      QP   ++I+   A+++ A+P   FM  
Sbjct: 81  PSAPPNQVLLGLALFLTFFIMSPVIDKIYTDAYQPFSEDKISMEVALEKGAQPLREFMLR 140

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
            TRE DL+LF  +A++     ++   + +  RIL+P+++ SEL+ +F+IGF I +PFLII
Sbjct: 141 QTREADLALFARLANTG----ELQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLII 196

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           D+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 197 DLVIASVLMALGMMMVPPATIALPFKIMLFVLVDGWQLLVSSLAQSF 243


>gi|170759449|ref|YP_001787969.1| flagellar biosynthesis protein FliP [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169406438|gb|ACA54849.1| flagellar biosynthetic protein FliP [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 258

 Score =  195 bits (496), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 97/199 (48%), Positives = 140/199 (70%), Gaps = 4/199 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T+L++ P  ++M+T F R I+VF  LR  MG    PPN V+I LALF+T ++M P     
Sbjct: 63  TVLTLLPSFIVMMTSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEI 122

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
               IQP M N+IT+  A++  A+P   FM   TR+KDL LF+D+A     N  +TK++ 
Sbjct: 123 NTKAIQPYMKNKITQEQAVETGAKPLRQFMLKQTRQKDLKLFVDLAKP---NFKVTKDNA 179

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
             Y I++P+F+ISEL+ +F+IGFL+ +PFLIID++VA+++M+MGM MLPP  ISLPFK++
Sbjct: 180 PLY-IVVPAFIISELKTAFQIGFLLFIPFLIIDLVVASVLMSMGMFMLPPVMISLPFKLL 238

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FV++DGW LLV++LV SF
Sbjct: 239 LFVMVDGWYLLVKSLVMSF 257


>gi|186477688|ref|YP_001859158.1| flagellar biosynthesis protein FliP [Burkholderia phymatum STM815]
 gi|184194147|gb|ACC72112.1| flagellar biosynthetic protein FliP [Burkholderia phymatum STM815]
          Length = 281

 Score =  195 bits (496), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 100/242 (41%), Positives = 153/242 (63%), Gaps = 7/242 (2%)

Query: 8   ALFLVTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
           AL L  P L  A+++     N    P   +  +  V+T  + T+LS  P +++M+T F R
Sbjct: 44  ALMLAAPTLSHAQTAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTR 103

Query: 65  FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
            IIV S+LR  +G  + PPN V++ LALF+T +VMSP LD++   G +P     I    A
Sbjct: 104 IIIVLSLLRQAIGAPTTPPNQVLVGLALFLTLFVMSPVLDKAYNDGYKPFSEGTIQMDEA 163

Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
           ++R   PF  FM   TRE DL+LF  ++H+      +   + +   +L+PSF+ SEL+  
Sbjct: 164 VKRGVAPFKAFMLKQTRESDLALFARISHAP----PMQGPEDVPLSLLVPSFVTSELKTG 219

Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           F+IGF + +PF+IIDM+VA+++M+MGMMM+ P +ISLPFK++ FVL+DGW L+V +L +S
Sbjct: 220 FQIGFTVFIPFVIIDMVVASVLMSMGMMMISPATISLPFKLMLFVLVDGWQLIVGSLAQS 279

Query: 245 FI 246
           F+
Sbjct: 280 FV 281


>gi|238920321|ref|YP_002933836.1| flagellar biosynthetic protein FliP, [Edwardsiella ictaluri 93-146]
 gi|238869890|gb|ACR69601.1| flagellar biosynthetic protein FliP, putative [Edwardsiella
           ictaluri 93-146]
          Length = 246

 Score =  195 bits (496), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 94/206 (45%), Positives = 141/206 (68%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T    T LS  P  L+++T F R IIV  +LR  +G  S PPN V++ LALF+TF++M
Sbjct: 43  VQTLVFLTSLSFLPAALLLMTSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFIM 102

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP LD+  +   QP    +I+  TA+ R A+P   FM   TRE DL+LF  +A    +  
Sbjct: 103 SPVLDKIYQEAYQPFSEQKISMETALDRGAKPLRAFMLRQTRETDLALFSRLA----KQP 158

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           ++   + +  RIL+P+++ SEL+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP +I
Sbjct: 159 EMQGPEDVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATI 218

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 219 SLPFKLMLFVLVDGWQLLLGSLAQSF 244


>gi|78043022|ref|YP_359852.1| flagellar biosynthesis protein FliP [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995137|gb|ABB14036.1| flagellar biosynthetic protein FliP [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 254

 Score =  195 bits (496), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 91/193 (47%), Positives = 137/193 (70%), Gaps = 4/193 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P  L+++T F R ++V S+LR  MG    PPN V+I LALF+T ++MSP +++  +  IQ
Sbjct: 65  PAFLLLMTSFTRIVVVLSLLRNAMGTQQAPPNQVLIGLALFLTIFIMSPVINKINQDAIQ 124

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P +NNQIT+  AI+    P   FM   TREKDL+LF+++A      T     D + + ++
Sbjct: 125 PYLNNQITQEQAIRAAEAPLKDFMLKQTREKDLALFIELAKLPRPQT----KDDVPFTVV 180

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           +P+F+ISEL+ +F++GF++ LPFLIIDM+VA+I+M+MGM M+PP  ++LPFK++ FVL D
Sbjct: 181 VPAFIISELKTAFQMGFMLFLPFLIIDMVVASILMSMGMFMIPPMLVALPFKLLLFVLAD 240

Query: 233 GWSLLVENLVKSF 245
           GW L+V++LV SF
Sbjct: 241 GWYLVVKSLVSSF 253


>gi|188492613|ref|ZP_02999883.1| flagellar biosynthetic protein FliP [Escherichia coli 53638]
 gi|188487812|gb|EDU62915.1| flagellar biosynthetic protein FliP [Escherichia coli 53638]
          Length = 245

 Score =  195 bits (496), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 103/239 (43%), Positives = 157/239 (65%), Gaps = 9/239 (3%)

Query: 9   LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66
           L+LVTP L FA+  L  + + P      +W   V+T    T L+  P +L+M+T F R I
Sbjct: 12  LWLVTP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +I+   A++
Sbjct: 69  IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVNAYQPFSEEKISMQEALE 128

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           + A+P   FM   TRE DL LF  +A++      +   + +  RIL+P+++ SEL+ +F+
Sbjct: 129 KGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQ 184

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243


>gi|331663444|ref|ZP_08364354.1| flagellar biosynthetic protein FliP [Escherichia coli TA143]
 gi|331059243|gb|EGI31220.1| flagellar biosynthetic protein FliP [Escherichia coli TA143]
          Length = 249

 Score =  195 bits (495), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 103/239 (43%), Positives = 157/239 (65%), Gaps = 9/239 (3%)

Query: 9   LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66
           L+LVTP L FA+  L  + + P      +W   V+T    T L+  P +L+M+T F R I
Sbjct: 12  LWLVTP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +I+   A++
Sbjct: 69  IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           + A+P   FM   TRE DL LF  +A++      +   + +  RIL+P+++ SEL+ +F+
Sbjct: 129 KGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQ 184

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243


>gi|330839520|ref|YP_004414100.1| flagellar biosynthetic protein FliP [Selenomonas sputigena ATCC
           35185]
 gi|329747284|gb|AEC00641.1| flagellar biosynthetic protein FliP [Selenomonas sputigena ATCC
           35185]
          Length = 252

 Score =  195 bits (495), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 96/216 (44%), Positives = 144/216 (66%), Gaps = 7/216 (3%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P D++ S  I+    + TILS+ P +L+M T F R ++V   LR  M   +VPPN V+++
Sbjct: 43  PQDVATSLQIL---ALLTILSLVPSILVMTTSFVRIVVVIGFLRNAMSTQNVPPNQVVLA 99

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           L+LF+TFY+M P    + + GIQP +  QIT+  AI     P   FM   TRE DL+LF+
Sbjct: 100 LSLFLTFYIMQPYWSEANQQGIQPYLAGQITQEQAIDNTLAPLREFMFRQTRESDLALFV 159

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
           +++ +    +       +    LIP+F+ISEL+ +F+IGF+I +PF++IDMIVA+ +M+M
Sbjct: 160 NLSDAERPES----QADVSTATLIPAFVISELKTAFQIGFMIYIPFIVIDMIVASTLMSM 215

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMMLPP  ISLPFK++ FV++DGW LL+++L+ SF
Sbjct: 216 GMMMLPPVMISLPFKILLFVMVDGWHLLIKSLIMSF 251


>gi|260886649|ref|ZP_05897912.1| flagellar biosynthetic protein FliP [Selenomonas sputigena ATCC
           35185]
 gi|260863792|gb|EEX78292.1| flagellar biosynthetic protein FliP [Selenomonas sputigena ATCC
           35185]
          Length = 251

 Score =  195 bits (495), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 96/216 (44%), Positives = 144/216 (66%), Gaps = 7/216 (3%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P D++ S  I+    + TILS+ P +L+M T F R ++V   LR  M   +VPPN V+++
Sbjct: 42  PQDVATSLQIL---ALLTILSLVPSILVMTTSFVRIVVVIGFLRNAMSTQNVPPNQVVLA 98

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           L+LF+TFY+M P    + + GIQP +  QIT+  AI     P   FM   TRE DL+LF+
Sbjct: 99  LSLFLTFYIMQPYWSEANQQGIQPYLAGQITQEQAIDNTLAPLREFMFRQTRESDLALFV 158

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
           +++ +    +       +    LIP+F+ISEL+ +F+IGF+I +PF++IDMIVA+ +M+M
Sbjct: 159 NLSDAERPES----QADVSTATLIPAFVISELKTAFQIGFMIYIPFIVIDMIVASTLMSM 214

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMMLPP  ISLPFK++ FV++DGW LL+++L+ SF
Sbjct: 215 GMMMLPPVMISLPFKILLFVMVDGWHLLIKSLIMSF 250


>gi|163856448|ref|YP_001630746.1| flagellar biosynthesis protein FliP [Bordetella petrii DSM 12804]
 gi|163260176|emb|CAP42478.1| flagellar biosynthesis protein FliP [Bordetella petrii]
          Length = 262

 Score =  195 bits (495), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 100/234 (42%), Positives = 148/234 (63%), Gaps = 6/234 (2%)

Query: 14  PELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
           P  V A+++L  +   P      T+ +  +T  + T LS  P  L+M+T F R IIV  +
Sbjct: 31  PAGVVAQATLPALTATPGPGGAQTYSLSMQTLLLMTSLSFLPAALLMMTGFTRIIIVLGL 90

Query: 72  LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
           LR+ +G    PPN V+I LALF+TFY MSP  DR      +PL    I   TA++R A P
Sbjct: 91  LRSALGTAMSPPNHVLIGLALFLTFYTMSPVFDRIYSEAYKPLSEGSIPFETAVERAAAP 150

Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
              FM + TRE DL+LF ++A+       +     +  +IL+P+F+ SEL+ +F+IGF I
Sbjct: 151 LHTFMLHQTRENDLTLFANLAN----QPALEDPSQVPMKILVPAFITSELKTAFQIGFTI 206

Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            +PFLIID++VA+++MA+GMMM+PP +++LPFK++ FVL DGW+LL+ +L  SF
Sbjct: 207 FIPFLIIDLVVASVLMALGMMMVPPVTVALPFKLMLFVLADGWNLLLGSLASSF 260


>gi|225849157|ref|YP_002729321.1| flagellar biosynthetic protein FliP [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644291|gb|ACN99341.1| flagellar biosynthetic protein FliP [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 239

 Score =  195 bits (495), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 94/199 (47%), Positives = 140/199 (70%), Gaps = 5/199 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T+LSIAP +LI +T F R +IV S+LR  +G+ + PPN VI+ LALF+TF++M P  D+ 
Sbjct: 44  TVLSIAPAILISMTSFVRIVIVLSLLRHALGIPTAPPNQVIVGLALFLTFFIMKPVFDKI 103

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
            E+ + P +  QI++  AI+   +P   FM  NTR++DL LF+D++    +     K + 
Sbjct: 104 NEVSLTPYLKKQISDVQAIENAKQPLKEFMLKNTRKEDLKLFIDISKEKPQ-----KLED 158

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
           +    LIP+FMISE++ +FEI F+I LPF++ID +VA+I+M+MGMMM+PP  ISLPFK++
Sbjct: 159 VSMTTLIPAFMISEIKTAFEIVFIIYLPFIVIDFVVASILMSMGMMMVPPMFISLPFKLM 218

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FVL DGW LL + L++S+
Sbjct: 219 LFVLADGWELLTKALIQSY 237


>gi|56413108|ref|YP_150183.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362034|ref|YP_002141671.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56127365|gb|AAV76871.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197093511|emb|CAR58972.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 245

 Score =  195 bits (495), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 100/240 (41%), Positives = 155/240 (64%), Gaps = 9/240 (3%)

Query: 8   ALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRF 65
            L+L +P    A + L  +++ P      +W   V+T    T L+  P +L+M+T F R 
Sbjct: 11  GLWLFSPA---AAAQLPGLISQPLAGGGQSWSLSVQTLVFITSLTFLPAILLMMTSFTRI 67

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
           IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +I+   A+
Sbjct: 68  IIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQKISMQEAL 127

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
            + A+P   FM   TRE DL+LF  +A+S      +   + +  RIL+P+++ SEL+ +F
Sbjct: 128 DKGAQPLCAFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSELKTAF 183

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 184 QIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243


>gi|323961992|gb|EGB57591.1| flagellar biosynthetic protein FliP [Escherichia coli H489]
          Length = 245

 Score =  195 bits (495), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 101/237 (42%), Positives = 155/237 (65%), Gaps = 5/237 (2%)

Query: 9   LFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIV 68
           L+LVTP L FA+    +   +P      +  V+T    T L+  P +L+M+T F R IIV
Sbjct: 12  LWLVTP-LAFAQLPGINSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIIIV 70

Query: 69  FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128
           F +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +I+   A+++ 
Sbjct: 71  FGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALEKG 130

Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188
           A+P   FM   TRE DL LF  +A++      +   + +  RIL+P+++ SEL+ +F+IG
Sbjct: 131 AQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQIG 186

Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           F I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 187 FTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243


>gi|218689943|ref|YP_002398155.1| flagellar biosynthesis protein FliP [Escherichia coli ED1a]
 gi|300818632|ref|ZP_07098840.1| flagellar biosynthetic protein FliP [Escherichia coli MS 107-1]
 gi|218427507|emb|CAR08402.2| flagellar biosynthesis protein [Escherichia coli ED1a]
 gi|300528804|gb|EFK49866.1| flagellar biosynthetic protein FliP [Escherichia coli MS 107-1]
          Length = 245

 Score =  195 bits (495), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 103/239 (43%), Positives = 157/239 (65%), Gaps = 9/239 (3%)

Query: 9   LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66
           L+LVTP L FA+  L  + + P      +W   V+T    T L+  P +L+M+T F R I
Sbjct: 12  LWLVTP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +I+   A++
Sbjct: 69  IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           + A+P   FM   TRE DL LF  +A++      +   + +  RIL+P+++ SEL+ +F+
Sbjct: 129 KGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQ 184

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243


>gi|254487121|ref|ZP_05100326.1| flagellar biosynthetic protein FliP [Roseobacter sp. GAI101]
 gi|214043990|gb|EEB84628.1| flagellar biosynthetic protein FliP [Roseobacter sp. GAI101]
          Length = 245

 Score =  195 bits (495), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 96/212 (45%), Positives = 141/212 (66%), Gaps = 3/212 (1%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           ++S   ++ F + T+LS+AP + +MVTCFP  + V SILR  +G+   PPN++I+SLALF
Sbjct: 36  ALSARTIQLFVLITVLSLAPGIAVMVTCFPFLVTVLSILRQAIGLQQSPPNMLIVSLALF 95

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           +T+++M P    + E G++PL N QI   TA  +  EPF  FM       D + F  MA 
Sbjct: 96  LTYFIMEPVFTAAWENGLEPLANEQIDVETAFAQAMEPFRQFMVGRL---DPATFTAMAE 152

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
                  +  +      +L+PSFM+SE+ R+F+IGFL+ LPFLIID++VA I+M+MGMMM
Sbjct: 153 LRPDTAGLALDLDAPLSVLVPSFMLSEITRAFQIGFLVYLPFLIIDLVVAAILMSMGMMM 212

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +PP  +SLPFK+ FFV+ DGWSL+  +LV+S+
Sbjct: 213 VPPAVVSLPFKLAFFVVADGWSLIAGSLVRSY 244


>gi|296157442|ref|ZP_06840277.1| flagellar biosynthetic protein FliP [Burkholderia sp. Ch1-1]
 gi|295892214|gb|EFG71997.1| flagellar biosynthetic protein FliP [Burkholderia sp. Ch1-1]
          Length = 279

 Score =  195 bits (495), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 100/234 (42%), Positives = 152/234 (64%), Gaps = 7/234 (2%)

Query: 16  LVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72
           L FA+++     N    P   +  +  V+T  + T+LS  P +++M+T F R IIV S+L
Sbjct: 50  LSFAQAAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTRIIIVLSLL 109

Query: 73  RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132
           R  +G  + PPN V++ LALF+T +VMSP LD++   G +P  +  I   TA+ R   PF
Sbjct: 110 RQALGTTTTPPNQVLVGLALFLTLFVMSPVLDKAYTDGYKPFSDGSIPMETAVNRGLAPF 169

Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192
             FM   TRE DL+LF  ++H++     +   + +   +L+PSF+ SEL+  F+IGF I 
Sbjct: 170 KTFMLRQTRESDLALFARISHAA----PMQGPEDVPLSLLVPSFVTSELKTGFQIGFTIF 225

Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +PFLIIDM+VA+++M+MGMMM+ P +ISLPFK++ FVL+DGW LL+ +L +SF+
Sbjct: 226 IPFLIIDMVVASVLMSMGMMMVSPATISLPFKLMLFVLVDGWQLLLGSLAQSFV 279


>gi|188997535|ref|YP_001931786.1| flagellar biosynthetic protein FliP [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932602|gb|ACD67232.1| flagellar biosynthetic protein FliP [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 337

 Score =  195 bits (495), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 102/196 (52%), Positives = 135/196 (68%), Gaps = 5/196 (2%)

Query: 50  SIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEM 109
           SIAP LLI VT F R +IV S+LR  +G+ + PPN VI+ LALF+T +VM PT D+  E+
Sbjct: 146 SIAPALLISVTAFVRIVIVLSLLRHALGIPTAPPNQVIVGLALFLTIFVMKPTFDKINEV 205

Query: 110 GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169
            I P +  QI++  AI+   EP   FM  NTR++DL LF+D+A     N        I  
Sbjct: 206 SISPYLKKQISDIQAIENAKEPLKEFMLKNTRKEDLKLFLDLA-----NEKPLSPKDISI 260

Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
             LIP+FMISE++ +FEI F+I LPFL+ID IVA+I+M+MGMMM+PP  ISLPFK++ FV
Sbjct: 261 STLIPAFMISEIKTAFEIVFIIYLPFLVIDFIVASILMSMGMMMIPPMFISLPFKLMLFV 320

Query: 230 LIDGWSLLVENLVKSF 245
           L DG+ LLV+ LV S+
Sbjct: 321 LADGFELLVKALVSSY 336


>gi|170019719|ref|YP_001724673.1| flagellar biosynthesis protein FliP [Escherichia coli ATCC 8739]
 gi|187730211|ref|YP_001879727.1| flagellar biosynthesis protein FliP [Shigella boydii CDC 3083-94]
 gi|209919370|ref|YP_002293454.1| flagellar biosynthesis protein FliP [Escherichia coli SE11]
 gi|218705441|ref|YP_002412960.1| flagellar biosynthesis protein FliP [Escherichia coli UMN026]
 gi|260855923|ref|YP_003229814.1| flagellar biosynthesis protein FliP [Escherichia coli O26:H11 str.
           11368]
 gi|260868541|ref|YP_003234943.1| flagellar biosynthesis protein FliP [Escherichia coli O111:H- str.
           11128]
 gi|293405431|ref|ZP_06649423.1| flagellar biosynthetic protein fliP [Escherichia coli FVEC1412]
 gi|298381075|ref|ZP_06990674.1| flagellar biosynthetic protein fliP [Escherichia coli FVEC1302]
 gi|300822282|ref|ZP_07102423.1| flagellar biosynthetic protein FliP [Escherichia coli MS 119-7]
 gi|300899205|ref|ZP_07117481.1| flagellar biosynthetic protein FliP [Escherichia coli MS 198-1]
 gi|300904838|ref|ZP_07122664.1| flagellar biosynthetic protein FliP [Escherichia coli MS 84-1]
 gi|300931161|ref|ZP_07146508.1| flagellar biosynthetic protein FliP [Escherichia coli MS 187-1]
 gi|300951573|ref|ZP_07165406.1| flagellar biosynthetic protein FliP [Escherichia coli MS 116-1]
 gi|300956536|ref|ZP_07168818.1| flagellar biosynthetic protein FliP [Escherichia coli MS 175-1]
 gi|301018202|ref|ZP_07182717.1| flagellar biosynthetic protein FliP [Escherichia coli MS 69-1]
 gi|301304257|ref|ZP_07210372.1| flagellar biosynthetic protein FliP [Escherichia coli MS 124-1]
 gi|301327735|ref|ZP_07220940.1| flagellar biosynthetic protein FliP [Escherichia coli MS 78-1]
 gi|301644593|ref|ZP_07244582.1| flagellar biosynthetic protein FliP [Escherichia coli MS 146-1]
 gi|307312466|ref|ZP_07592100.1| flagellar biosynthetic protein FliP [Escherichia coli W]
 gi|312967145|ref|ZP_07781363.1| flagellar biosynthetic protein FliP [Escherichia coli 2362-75]
 gi|331668639|ref|ZP_08369487.1| flagellar biosynthetic protein FliP [Escherichia coli TA271]
 gi|331673461|ref|ZP_08374229.1| flagellar biosynthetic protein FliP [Escherichia coli TA280]
 gi|169754647|gb|ACA77346.1| flagellar biosynthetic protein FliP [Escherichia coli ATCC 8739]
 gi|187427203|gb|ACD06477.1| flagellar biosynthetic protein FliP [Shigella boydii CDC 3083-94]
 gi|209912629|dbj|BAG77703.1| flagellar biosynthetic protein FliP [Escherichia coli SE11]
 gi|218432538|emb|CAR13431.1| flagellar biosynthesis protein [Escherichia coli UMN026]
 gi|257754572|dbj|BAI26074.1| flagellar biosynthesis protein FliP [Escherichia coli O26:H11 str.
           11368]
 gi|257764897|dbj|BAI36392.1| flagellar biosynthesis protein FliP [Escherichia coli O111:H- str.
           11128]
 gi|291427639|gb|EFF00666.1| flagellar biosynthetic protein fliP [Escherichia coli FVEC1412]
 gi|298278517|gb|EFI20031.1| flagellar biosynthetic protein fliP [Escherichia coli FVEC1302]
 gi|300316636|gb|EFJ66420.1| flagellar biosynthetic protein FliP [Escherichia coli MS 175-1]
 gi|300357186|gb|EFJ73056.1| flagellar biosynthetic protein FliP [Escherichia coli MS 198-1]
 gi|300399789|gb|EFJ83327.1| flagellar biosynthetic protein FliP [Escherichia coli MS 69-1]
 gi|300403265|gb|EFJ86803.1| flagellar biosynthetic protein FliP [Escherichia coli MS 84-1]
 gi|300449200|gb|EFK12820.1| flagellar biosynthetic protein FliP [Escherichia coli MS 116-1]
 gi|300461018|gb|EFK24511.1| flagellar biosynthetic protein FliP [Escherichia coli MS 187-1]
 gi|300525165|gb|EFK46234.1| flagellar biosynthetic protein FliP [Escherichia coli MS 119-7]
 gi|300840514|gb|EFK68274.1| flagellar biosynthetic protein FliP [Escherichia coli MS 124-1]
 gi|300845735|gb|EFK73495.1| flagellar biosynthetic protein FliP [Escherichia coli MS 78-1]
 gi|301077068|gb|EFK91874.1| flagellar biosynthetic protein FliP [Escherichia coli MS 146-1]
 gi|306907637|gb|EFN38140.1| flagellar biosynthetic protein FliP [Escherichia coli W]
 gi|309702237|emb|CBJ01554.1| flagellar biosynthetic protein FliP [Escherichia coli ETEC H10407]
 gi|312288609|gb|EFR16511.1| flagellar biosynthetic protein FliP [Escherichia coli 2362-75]
 gi|315061248|gb|ADT75575.1| flagellar biosynthesis protein [Escherichia coli W]
 gi|315257220|gb|EFU37188.1| flagellar biosynthetic protein FliP [Escherichia coli MS 85-1]
 gi|323152721|gb|EFZ38993.1| flagellar biosynthetic protein FliP [Escherichia coli EPECa14]
 gi|323180799|gb|EFZ66339.1| flagellar biosynthetic protein FliP [Escherichia coli 1180]
 gi|323378175|gb|ADX50443.1| flagellar biosynthetic protein FliP [Escherichia coli KO11]
 gi|323937218|gb|EGB33498.1| flagellar biosynthetic protein FliP [Escherichia coli E1520]
 gi|323940393|gb|EGB36584.1| flagellar biosynthetic protein FliP [Escherichia coli E482]
 gi|323968364|gb|EGB63771.1| flagellar biosynthetic protein FliP [Escherichia coli M863]
 gi|323977871|gb|EGB72957.1| flagellar biosynthetic protein FliP [Escherichia coli TW10509]
 gi|324118997|gb|EGC12886.1| flagellar biosynthetic protein FliP [Escherichia coli E1167]
 gi|327253080|gb|EGE64734.1| flagellar biosynthetic protein FliP [Escherichia coli STEC_7v]
 gi|331063833|gb|EGI35744.1| flagellar biosynthetic protein FliP [Escherichia coli TA271]
 gi|331069659|gb|EGI41046.1| flagellar biosynthetic protein FliP [Escherichia coli TA280]
 gi|332093095|gb|EGI98159.1| flagellar biosynthetic protein FliP [Shigella boydii 5216-82]
          Length = 245

 Score =  195 bits (495), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 103/239 (43%), Positives = 157/239 (65%), Gaps = 9/239 (3%)

Query: 9   LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66
           L+LVTP L FA+  L  + + P      +W   V+T    T L+  P +L+M+T F R I
Sbjct: 12  LWLVTP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +I+   A++
Sbjct: 69  IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           + A+P   FM   TRE DL LF  +A++      +   + +  RIL+P+++ SEL+ +F+
Sbjct: 129 KGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQ 184

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243


>gi|269139497|ref|YP_003296198.1| flagellar biosynthesis pathway, component FliP [Edwardsiella tarda
           EIB202]
 gi|267985158|gb|ACY84987.1| flagellar biosynthesis pathway, component FliP [Edwardsiella tarda
           EIB202]
 gi|304559386|gb|ADM42050.1| Flagellar biosynthesis protein FliP [Edwardsiella tarda FL6-60]
          Length = 246

 Score =  194 bits (494), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 94/206 (45%), Positives = 141/206 (68%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T    T LS  P  L+++T F R IIV  +LR  +G  S PPN V++ LALF+TF++M
Sbjct: 43  VQTLVFLTSLSFLPAALLLMTSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFIM 102

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP LD+  +   QP    +I+  TA+ R A+P   FM   TRE DL+LF  +A    +  
Sbjct: 103 SPVLDKIYQDAYQPFSEQKISMETALDRGAKPLRAFMLRQTRETDLALFSRLA----KQP 158

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           ++   + +  RIL+P+++ SEL+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP +I
Sbjct: 159 EMQGPEDVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATI 218

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 219 SLPFKLMLFVLVDGWQLLLGSLAQSF 244


>gi|325525522|gb|EGD03321.1| flagellar biosynthesis protein FliP [Burkholderia sp. TJI49]
          Length = 229

 Score =  194 bits (494), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 93/206 (45%), Positives = 142/206 (68%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T  + T+LS  P +++M+T F R IIV S+LR  +G  + PPN V++ LALF+TF+VM
Sbjct: 27  VQTMLLLTMLSFLPAMVLMMTSFTRIIIVLSLLRQALGTATTPPNQVLVGLALFLTFFVM 86

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP LDR+   G +P  +  +    A+QR   PF  FM   TRE DL+LF  ++ ++    
Sbjct: 87  SPVLDRAYTDGYKPFSDGSVPMEQAVQRGLAPFKGFMLKQTRETDLALFAKISKAAP--- 143

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +   + +   +L+P+F+ SEL+  F+IGF I +PFLIIDM+VA+++M+MGMMM+ P+++
Sbjct: 144 -MQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPSTV 202

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 203 SLPFKLMLFVLVDGWQLLIGSLAQSF 228


>gi|302343742|ref|YP_003808271.1| flagellar biosynthetic protein FliP [Desulfarculus baarsii DSM
           2075]
 gi|301640355|gb|ADK85677.1| flagellar biosynthetic protein FliP [Desulfarculus baarsii DSM
           2075]
          Length = 258

 Score =  194 bits (494), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 92/202 (45%), Positives = 142/202 (70%), Gaps = 6/202 (2%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T+L++AP +L+M T F R  + FS+LR  +G   VPP  +I+ L+LF+TF++M+P  D
Sbjct: 61  LLTVLTLAPAILVMTTSFVRIAVSFSLLRNALGAPQVPPTQIIVGLSLFLTFFIMAPVFD 120

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +  +  ++P ++  I+++   +  A+P   FM   TR+KDL LFM +A       D  +N
Sbjct: 121 QVHDKALKPYLDGAISQSAFFEEAAKPMREFMLKQTRKKDLGLFMKIA-----GEDRPRN 175

Query: 165 DH-IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
           +  +    L+P+F+ISELR +FEIGFL+ +PFL+IDM+VA+++++MGMMMLPP  ISLPF
Sbjct: 176 EQDVTMSALVPAFVISELRTAFEIGFLLYVPFLVIDMVVASVLLSMGMMMLPPVMISLPF 235

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K++ FVL+DGW LLV +LV+SF
Sbjct: 236 KLMLFVLVDGWYLLVGSLVRSF 257


>gi|16760923|ref|NP_456540.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29141385|ref|NP_804727.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62180554|ref|YP_216971.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161502899|ref|YP_001570011.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|167552788|ref|ZP_02346539.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|168234152|ref|ZP_02659210.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168239219|ref|ZP_02664277.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168462479|ref|ZP_02696410.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168823022|ref|ZP_02835022.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194444637|ref|YP_002041244.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194468817|ref|ZP_03074801.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194737682|ref|YP_002115013.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197247593|ref|YP_002146044.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197264056|ref|ZP_03164130.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|198244709|ref|YP_002215107.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200391063|ref|ZP_03217674.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204931035|ref|ZP_03221861.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|207856508|ref|YP_002243159.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213023112|ref|ZP_03337559.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
 gi|213163376|ref|ZP_03349086.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213417182|ref|ZP_03350326.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213424995|ref|ZP_03357745.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213584779|ref|ZP_03366605.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213650743|ref|ZP_03380796.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213855268|ref|ZP_03383508.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|224583522|ref|YP_002637320.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|25316655|pir||AD0753 flagellar biosynthetic protein FliP [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503220|emb|CAD05727.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29137012|gb|AAO68576.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62128187|gb|AAX65890.1| flagellar biosynthesis [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|160864246|gb|ABX20869.1| hypothetical protein SARI_00958 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|194403300|gb|ACF63522.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194455181|gb|EDX44020.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194713184|gb|ACF92405.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195634044|gb|EDX52396.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197211296|gb|ACH48693.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197242311|gb|EDY24931.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197288073|gb|EDY27460.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197939225|gb|ACH76558.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199603508|gb|EDZ02054.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204320079|gb|EDZ05284.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205322623|gb|EDZ10462.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205331887|gb|EDZ18651.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205340666|gb|EDZ27430.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|206708311|emb|CAR32614.1| flagellar biosynthetic protein flip precursor [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|224468049|gb|ACN45879.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|320085402|emb|CBY95183.1| Flagellar biosynthetic protein fliP Flagellar biosynthetic protein
           mopC [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|322715030|gb|EFZ06601.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|326622855|gb|EGE29200.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 245

 Score =  194 bits (494), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 100/240 (41%), Positives = 155/240 (64%), Gaps = 9/240 (3%)

Query: 8   ALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRF 65
            L+L +P    A + L  +++ P      +W   V+T    T L+  P +L+M+T F R 
Sbjct: 11  GLWLFSPA---AAAQLPGLISQPLAGGGQSWSLSVQTLVFITSLTFLPAILLMMTSFTRI 67

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
           IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +I+   A+
Sbjct: 68  IIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQKISMQEAL 127

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
            + A+P   FM   TRE DL+LF  +A+S      +   + +  RIL+P+++ SEL+ +F
Sbjct: 128 DKGAQPLRAFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSELKTAF 183

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 184 QIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243


>gi|118443404|ref|YP_877989.1| flagellar biosynthesis protein FliP [Clostridium novyi NT]
 gi|118133860|gb|ABK60904.1| flagellar biosynthetic protein fliP [Clostridium novyi NT]
          Length = 257

 Score =  194 bits (494), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 91/201 (45%), Positives = 144/201 (71%), Gaps = 3/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T++S+ P  L+M+T F R I+V   +R  +G    PPN +++ LALF+T ++M+PT  
Sbjct: 58  MLTVISLLPSFLVMMTSFTRIIVVLGFMRNALGTQQAPPNQILVGLALFLTIFIMTPTYK 117

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              +  I+P + N+IT+T A+   A+P   FM   TR+KDL LF+D++ +  +N  ITK 
Sbjct: 118 TINKEAIKPFLENKITQTEALNNAAKPMREFMLKQTRDKDLELFLDVSKTDKKN--ITK- 174

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           +++   ++IPSF+ISEL+ +F+IGFL+ +PFLIID++VA+++M+MGM MLPP  ISLPFK
Sbjct: 175 ENVPMYVVIPSFIISELKTAFKIGFLLFVPFLIIDIVVASVLMSMGMFMLPPVMISLPFK 234

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FV++DGW LLV++LV  +
Sbjct: 235 LLLFVMVDGWYLLVKSLVMGY 255


>gi|325497690|gb|EGC95549.1| flagellar biosynthesis protein FliP [Escherichia fergusonii ECD227]
          Length = 245

 Score =  194 bits (494), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 102/239 (42%), Positives = 156/239 (65%), Gaps = 9/239 (3%)

Query: 9   LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66
           L+LVTP    A + L  ++  P      +W   V+T    T L+  P +L+M+T F R I
Sbjct: 12  LWLVTP---CALAQLPGLVTQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +I+   A++
Sbjct: 69  IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           + A+P   FM   TRE DL+LF  +A++      I   + +  RIL+P+++ SEL+ +F+
Sbjct: 129 KGAQPLREFMLRQTREADLALFARLANTG----PIQGPEAVPMRILLPAYVTSELKTAFQ 184

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243


>gi|322378387|ref|ZP_08052842.1| flagellar biosynthesis protein FliP [Helicobacter suis HS1]
 gi|322380261|ref|ZP_08054481.1| flagellar biosynthesis protein FliP [Helicobacter suis HS5]
 gi|321147298|gb|EFX41978.1| flagellar biosynthesis protein FliP [Helicobacter suis HS5]
 gi|321149200|gb|EFX43645.1| flagellar biosynthesis protein FliP [Helicobacter suis HS1]
          Length = 250

 Score =  194 bits (494), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 99/195 (50%), Positives = 139/195 (71%), Gaps = 6/195 (3%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP L++++T F R I+VFS LRT +G    PP  +++SLAL +TF++M P   +S E  I
Sbjct: 57  APSLVLVMTSFIRLIVVFSFLRTALGTQQTPPTQILVSLALILTFFIMEPAAKQSYESAI 116

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYR 170
           +P +  +I+ T A ++   PF  FM  NTREKDL+LF  +     R  +  KN   +   
Sbjct: 117 KPYLVEKISYTEAFEKGIVPFKEFMLKNTREKDLALFFRI-----RRLENPKNASAVPLN 171

Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230
           IL+P+FMISEL+ +F+IGFL+ LPFL+IDM+V++I+MAMGMMMLPP  ISLPFK++ F+L
Sbjct: 172 ILVPAFMISELKTAFQIGFLLYLPFLVIDMVVSSILMAMGMMMLPPVMISLPFKILVFIL 231

Query: 231 IDGWSLLVENLVKSF 245
           +DG++LLVENLV SF
Sbjct: 232 VDGFNLLVENLVASF 246


>gi|126738561|ref|ZP_01754266.1| flagellar biosynthetic protein FliP [Roseobacter sp. SK209-2-6]
 gi|126720360|gb|EBA17066.1| flagellar biosynthetic protein FliP [Roseobacter sp. SK209-2-6]
          Length = 247

 Score =  194 bits (494), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 97/212 (45%), Positives = 142/212 (66%), Gaps = 3/212 (1%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           SIS   ++   + T+LS+AP +LIM+TCFP  + V SILR G+G+   PPN+++ISLALF
Sbjct: 37  SISARSIQLILLITVLSLAPGMLIMITCFPFLVTVLSILRQGLGLQQAPPNMLMISLALF 96

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           +T++VM P    + + GI PL+  QI   T + R  EPF  FM N           D+  
Sbjct: 97  LTYFVMEPVFTEAWQTGISPLIEEQIDVETGLIRSLEPFRGFMANRLDPDTFYAIADL-R 155

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
            + +  D T +  I   +L+PSF++SE+ R+F+IGFL+ LPFL+ID++VA ++M+MGMMM
Sbjct: 156 PATKGIDPTVDAPIS--VLVPSFLLSEIARAFQIGFLVFLPFLVIDLVVAAVLMSMGMMM 213

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +PP  +SLPFK+ FFV+ DGWSL+   LV+S+
Sbjct: 214 VPPAVVSLPFKLAFFVVADGWSLIATALVRSY 245


>gi|218549273|ref|YP_002383064.1| flagellar biosynthesis protein FliP [Escherichia fergusonii ATCC
           35469]
 gi|218356814|emb|CAQ89442.1| flagellar biosynthesis protein [Escherichia fergusonii ATCC 35469]
          Length = 245

 Score =  194 bits (494), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 102/239 (42%), Positives = 156/239 (65%), Gaps = 9/239 (3%)

Query: 9   LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66
           L+LVTP    A + L  ++  P      +W   V+T    T L+  P +L+M+T F R I
Sbjct: 12  LWLVTP---CALAQLPGLVTQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +I+   A++
Sbjct: 69  IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           + A+P   FM   TRE DL+LF  +A++      I   + +  RIL+P+++ SEL+ +F+
Sbjct: 129 KGAQPLREFMLRQTREADLALFARLANTG----PIQGPEAVPMRILLPAYVTSELKTAFQ 184

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243


>gi|294678995|ref|YP_003579610.1| flagellar biosynthetic protein FliP [Rhodobacter capsulatus SB
           1003]
 gi|294477815|gb|ADE87203.1| flagellar biosynthetic protein FliP [Rhodobacter capsulatus SB
           1003]
          Length = 240

 Score =  194 bits (494), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 100/199 (50%), Positives = 134/199 (67%), Gaps = 3/199 (1%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T+LS+AP L IMVTCFP  + V SILR  MG+   PPN++IISLALF+T++VM PT   S
Sbjct: 44  TLLSLAPGLAIMVTCFPFIVTVLSILRQAMGLQQSPPNMLIISLALFLTWFVMEPTFMAS 103

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
            + GI+PL+  +I   TA +R  EPF +FM   T   D   F  +A      T       
Sbjct: 104 YQAGIEPLIAQKIDIVTAFERGVEPFRIFMAGRT---DPETFTQLAAIREGATYTGTARE 160

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
               IL+PSFM+SE+ R+FEIGFL+ LPFLIID++V+ I+M+MGMMM+PP  ++LPFK+ 
Sbjct: 161 APLSILVPSFMLSEITRAFEIGFLVFLPFLIIDLVVSAILMSMGMMMVPPAVVALPFKLA 220

Query: 227 FFVLIDGWSLLVENLVKSF 245
           FFV+ +GW LL   LV+S+
Sbjct: 221 FFVVANGWVLLSGALVRSY 239


>gi|268679749|ref|YP_003304180.1| flagellar biosynthetic protein FliP [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268617780|gb|ACZ12145.1| flagellar biosynthetic protein FliP [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 238

 Score =  194 bits (494), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 95/195 (48%), Positives = 141/195 (72%), Gaps = 6/195 (3%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP L+ M+T F R +IVFS LR  +G   +PP+ V++SLA+ +TF++M P +  S ++ I
Sbjct: 48  APSLIFMMTSFLRLLIVFSFLRQALGTQQMPPSQVMVSLAMILTFFIMEPVMKESYDVAI 107

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYR 170
           +P +  +++   A ++ + PF  FM  NTREKDL+LF  +     RN +  KN + +   
Sbjct: 108 KPYLAEKMSYQEAFEKGSAPFKAFMIRNTREKDLALFFRI-----RNLENPKNIEDVPLT 162

Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230
           + +P+FMISEL+ +FEIGFL+ LPFL+IDM+V++++MAMGMMMLPP  ISLPFK++ FVL
Sbjct: 163 VAMPAFMISELKTAFEIGFLLYLPFLVIDMVVSSVLMAMGMMMLPPAMISLPFKLLIFVL 222

Query: 231 IDGWSLLVENLVKSF 245
           +DGW+LLV+ LV+SF
Sbjct: 223 VDGWNLLVQRLVESF 237


>gi|317051545|ref|YP_004112661.1| flagellar biosynthetic protein FliP [Desulfurispirillum indicum S5]
 gi|316946629|gb|ADU66105.1| flagellar biosynthetic protein FliP [Desulfurispirillum indicum S5]
          Length = 253

 Score =  194 bits (494), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 96/195 (49%), Positives = 139/195 (71%), Gaps = 4/195 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +L+++T F R +IV S LR  MG    PPN V++SLALF+TFY+M PT  +  ++ +
Sbjct: 61  APSILVLMTSFVRILIVLSFLRQAMGTMQSPPNQVLVSLALFLTFYIMMPTFQQINDVAL 120

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           QP +N +I    A+   A P   FM  +TREKDL+LF+   H S      TK D + +  
Sbjct: 121 QPYLNQEIGTQEALDNAARPLSEFMLKHTREKDLALFV---HFSGDERPATKED-VSFFT 176

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           L+P+F+ISEL+ +F++GF+I +PFLIIDM+VA+ +M+MGMMMLPP  IS+PFKVI FVL+
Sbjct: 177 LVPAFVISELKTAFQMGFMIFIPFLIIDMVVASTLMSMGMMMLPPAMISMPFKVILFVLV 236

Query: 232 DGWSLLVENLVKSFI 246
           DGW+L++ +L++SF+
Sbjct: 237 DGWNLVMSSLLRSFV 251


>gi|296273474|ref|YP_003656105.1| flagellar biosynthetic protein FliP [Arcobacter nitrofigilis DSM
           7299]
 gi|296097648|gb|ADG93598.1| flagellar biosynthetic protein FliP [Arcobacter nitrofigilis DSM
           7299]
          Length = 242

 Score =  194 bits (494), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 97/194 (50%), Positives = 133/194 (68%), Gaps = 6/194 (3%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P LL+MVT F R IIV S+LR  MG+   PPN ++IS+AL +T ++M P    S   GI+
Sbjct: 53  PTLLLMVTSFTRLIIVLSLLRQAMGLQQAPPNQIVISMALILTIFIMEPYAKTSYNEGIK 112

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYRI 171
           P M  +I    A  +  +PF  FM  NTRE+D++LF  +    +      KN D +   +
Sbjct: 113 PYMEEKIGYEEAFAKSVKPFKEFMIKNTREEDIALFYRIKKEKN-----PKNIDDVALTL 167

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           L+P+F++SELR +FEIGFLI LPFL+ID+IVA+I+M++GMMMLPP  ISLP KVIFF++I
Sbjct: 168 LMPAFIVSELRTAFEIGFLIFLPFLVIDIIVASILMSLGMMMLPPVMISLPIKVIFFIII 227

Query: 232 DGWSLLVENLVKSF 245
           DGW L++ NL +SF
Sbjct: 228 DGWQLIIGNLAQSF 241


>gi|146312185|ref|YP_001177259.1| flagellar biosynthesis protein FliP [Enterobacter sp. 638]
 gi|145319061|gb|ABP61208.1| flagellar biosynthetic protein FliP [Enterobacter sp. 638]
          Length = 245

 Score =  194 bits (494), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 96/227 (42%), Positives = 150/227 (66%), Gaps = 6/227 (2%)

Query: 21  SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           + L  +++ P      +W   V+T    T L+  P +L+M+T F R IIVF +LR  +G 
Sbjct: 21  AQLPGLISTPMAGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIIIVFGLLRNALGT 80

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
            S PPN V++ LALF+TF++MSP +D+      QP   ++I+   A+++ A+P   FM  
Sbjct: 81  PSAPPNQVLLGLALFLTFFIMSPVIDKIYADAYQPFSEDKISMQVALEKGAQPLREFMLR 140

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
            TRE DL+LF  +A+       I   + +  RIL+P+++ SEL+ +F+IGF I +PFLII
Sbjct: 141 QTREADLALFARLANEG----PIQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLII 196

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           D+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 197 DLVIASVLMALGMMMVPPATIALPFKIMLFVLVDGWQLLVGSLAQSF 243


>gi|238916764|ref|YP_002930281.1| triacylglycerol lipase [Eubacterium eligens ATCC 27750]
 gi|238872124|gb|ACR71834.1| triacylglycerol lipase [Eubacterium eligens ATCC 27750]
          Length = 267

 Score =  194 bits (493), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 95/201 (47%), Positives = 137/201 (68%), Gaps = 2/201 (0%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T++S+AP +LIM+T F R +IV    R  +G  +VPPN VII L+LF+TF+VMSPT  
Sbjct: 68  VLTVISLAPSILIMLTSFTRIVIVLHFTRAAIGTQTVPPNQVIIGLSLFLTFFVMSPTFT 127

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              +  ++PL NN+I+   A +   +P   FM   T  KDL  F  +A   +    +T  
Sbjct: 128 EIYDSALKPLSNNEISVEEAYETGVKPLKTFMLKQTSTKDLDTFFKIA--GYEEGSVTSE 185

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D I   +L+PSF+ISELR +F IGFLI +PF+IIDM+V++ +M+MGMMMLPPT+IS PFK
Sbjct: 186 DDISMTVLVPSFIISELRIAFIIGFLIYIPFIIIDMVVSSTLMSMGMMMLPPTTISAPFK 245

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FV+ DGW+L++ NL+ +F
Sbjct: 246 ILLFVMADGWNLIIGNLITTF 266


>gi|322806978|emb|CBZ04548.1| flagellar biosynthesis protein FliP [Clostridium botulinum H04402
           065]
          Length = 258

 Score =  194 bits (493), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 97/199 (48%), Positives = 140/199 (70%), Gaps = 4/199 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T+L++ P  ++M+T F R I+VF  LR  MG    PPN V+I LALF+T ++M P     
Sbjct: 63  TVLTLLPSFIVMMTSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEI 122

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
               IQP M N+IT+  A++  A+P   FM   TR+KDL LF+D+A     N  +TK++ 
Sbjct: 123 NTKAIQPYMKNKITQEQAVEIGAKPLRQFMLKQTRQKDLKLFVDLAKP---NFKVTKDNA 179

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
             Y I++P+F+ISEL+ +F+IGFL+ +PFLIID++VA+++M+MGM MLPP  ISLPFK++
Sbjct: 180 PLY-IVVPAFIISELKTAFQIGFLLFIPFLIIDLVVASVLMSMGMFMLPPVMISLPFKLL 238

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FV++DGW LLV++LV SF
Sbjct: 239 LFVMVDGWYLLVKSLVMSF 257


>gi|322616972|gb|EFY13880.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618211|gb|EFY15103.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625882|gb|EFY22701.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322626334|gb|EFY23144.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632749|gb|EFY29494.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322639091|gb|EFY35784.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640407|gb|EFY37063.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647232|gb|EFY43731.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649920|gb|EFY46341.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655528|gb|EFY51836.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660306|gb|EFY56544.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662987|gb|EFY59194.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668172|gb|EFY64331.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674069|gb|EFY70163.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675579|gb|EFY71653.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322683010|gb|EFY79026.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686704|gb|EFY82682.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323195408|gb|EFZ80588.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198064|gb|EFZ83181.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323204464|gb|EFZ89470.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207554|gb|EFZ92502.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211007|gb|EFZ95867.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217539|gb|EGA02258.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220728|gb|EGA05172.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226685|gb|EGA10882.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231561|gb|EGA15674.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236004|gb|EGA20083.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240574|gb|EGA24617.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245466|gb|EGA29466.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247584|gb|EGA31535.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253953|gb|EGA37777.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323255519|gb|EGA39280.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262117|gb|EGA45680.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266240|gb|EGA49730.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323270651|gb|EGA54092.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 245

 Score =  194 bits (493), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 100/240 (41%), Positives = 155/240 (64%), Gaps = 9/240 (3%)

Query: 8   ALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRF 65
            L+L +P    A + L  +++ P      +W   V+T    T L+  P +L+M+T F R 
Sbjct: 11  GLWLFSPT---AAAQLPGLISQPLAGGGQSWSLSVQTLVFITSLTFLPAILLMMTSFTRI 67

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
           IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +I+   A+
Sbjct: 68  IIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQKISMQEAL 127

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
            + A+P   FM   TRE DL+LF  +A+S      +   + +  RIL+P+++ SEL+ +F
Sbjct: 128 DKGAQPLRAFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSELKTAF 183

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 184 QIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243


>gi|15802383|ref|NP_288409.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H7
           EDL933]
 gi|15831941|ref|NP_310714.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str.
           Sakai]
 gi|16129895|ref|NP_416458.1| flagellar biosynthesis protein [Escherichia coli str. K-12 substr.
           MG1655]
 gi|89108780|ref|AP_002560.1| flagellar biosynthesis protein [Escherichia coli str. K-12 substr.
           W3110]
 gi|157156523|ref|YP_001463250.1| flagellar biosynthesis protein FliP [Escherichia coli E24377A]
 gi|168751877|ref|ZP_02776899.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC4113]
 gi|168758262|ref|ZP_02783269.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC4401]
 gi|168764426|ref|ZP_02789433.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC4501]
 gi|168771555|ref|ZP_02796562.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC4486]
 gi|168777375|ref|ZP_02802382.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783345|ref|ZP_02808352.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC4076]
 gi|168790292|ref|ZP_02815299.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC869]
 gi|168802295|ref|ZP_02827302.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC508]
 gi|170081592|ref|YP_001730912.1| flagellar biosynthesis protein [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170682430|ref|YP_001743297.1| flagellar biosynthesis protein FliP [Escherichia coli SMS-3-5]
 gi|191168304|ref|ZP_03030097.1| flagellar biosynthetic protein FliP [Escherichia coli B7A]
 gi|193066380|ref|ZP_03047428.1| flagellar biosynthetic protein FliP [Escherichia coli E22]
 gi|193071148|ref|ZP_03052072.1| flagellar biosynthetic protein FliP [Escherichia coli E110019]
 gi|194429937|ref|ZP_03062447.1| flagellar biosynthetic protein FliP [Escherichia coli B171]
 gi|194439571|ref|ZP_03071644.1| flagellar biosynthetic protein FliP [Escherichia coli 101-1]
 gi|195939254|ref|ZP_03084636.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str.
           EC4024]
 gi|208810650|ref|ZP_03252526.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC4206]
 gi|208816935|ref|ZP_03258055.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819585|ref|ZP_03259905.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400543|ref|YP_002271065.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC4115]
 gi|217328816|ref|ZP_03444897.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           TW14588]
 gi|218554528|ref|YP_002387441.1| flagellar biosynthesis protein FliP [Escherichia coli IAI1]
 gi|218695553|ref|YP_002403220.1| flagellar biosynthesis protein FliP [Escherichia coli 55989]
 gi|237705907|ref|ZP_04536388.1| flagellar biosynthetic protein fliP [Escherichia sp. 3_2_53FAA]
 gi|238901153|ref|YP_002926949.1| flagellar biosynthesis protein [Escherichia coli BW2952]
 gi|253773103|ref|YP_003035934.1| flagellar biosynthesis protein FliP [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254793598|ref|YP_003078435.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str.
           TW14359]
 gi|256017859|ref|ZP_05431724.1| flagellar biosynthesis protein FliP [Shigella sp. D9]
 gi|256022394|ref|ZP_05436259.1| flagellar biosynthesis protein FliP [Escherichia sp. 4_1_40B]
 gi|260844347|ref|YP_003222125.1| flagellar biosynthesis protein FliP [Escherichia coli O103:H2 str.
           12009]
 gi|261227557|ref|ZP_05941838.1| flagellar biosynthesis protein [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261254619|ref|ZP_05947152.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291283125|ref|YP_003499943.1| Flagellar biosynthetic protein fliP precursor [Escherichia coli
           O55:H7 str. CB9615]
 gi|293415258|ref|ZP_06657901.1| flagellar biosynthetic protein FliP [Escherichia coli B185]
 gi|293446328|ref|ZP_06662750.1| flagellar biosynthetic protein FliP [Escherichia coli B088]
 gi|300920167|ref|ZP_07136617.1| flagellar biosynthetic protein FliP [Escherichia coli MS 115-1]
 gi|300923889|ref|ZP_07139904.1| flagellar biosynthetic protein FliP [Escherichia coli MS 182-1]
 gi|301029405|ref|ZP_07192499.1| flagellar biosynthetic protein FliP [Escherichia coli MS 196-1]
 gi|307138615|ref|ZP_07497971.1| flagellar biosynthesis protein FliP [Escherichia coli H736]
 gi|309795945|ref|ZP_07690358.1| flagellar biosynthetic protein FliP [Escherichia coli MS 145-7]
 gi|312973835|ref|ZP_07788007.1| flagellar biosynthetic protein FliP [Escherichia coli 1827-70]
 gi|331642569|ref|ZP_08343704.1| flagellar biosynthetic protein FliP [Escherichia coli H736]
 gi|331677830|ref|ZP_08378505.1| flagellar biosynthetic protein FliP [Escherichia coli H591]
 gi|332278885|ref|ZP_08391298.1| flagellar biosynthesis protein [Shigella sp. D9]
 gi|81175289|sp|P0AC06|FLIP_ECO57 RecName: Full=Flagellar biosynthetic protein fliP; Flags: Precursor
 gi|81175290|sp|P0AC05|FLIP_ECOLI RecName: Full=Flagellar biosynthetic protein fliP; Flags: Precursor
 gi|12516055|gb|AAG56963.1|AE005417_5 flagellar biosynthesis [Escherichia coli O157:H7 str. EDL933]
 gi|347243|gb|AAC36859.1| flagellar protein [Escherichia coli]
 gi|1736614|dbj|BAA15773.1| flagellar biosynthesis protein [Escherichia coli str. K12 substr.
           W3110]
 gi|1788259|gb|AAC75015.1| flagellar biosynthesis protein [Escherichia coli str. K-12 substr.
           MG1655]
 gi|13362155|dbj|BAB36110.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           Sakai]
 gi|157078553|gb|ABV18261.1| flagellar biosynthetic protein FliP [Escherichia coli E24377A]
 gi|169889427|gb|ACB03134.1| flagellar biosynthesis protein [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170520148|gb|ACB18326.1| flagellar biosynthetic protein FliP [Escherichia coli SMS-3-5]
 gi|187767404|gb|EDU31248.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC4196]
 gi|188014148|gb|EDU52270.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999261|gb|EDU68247.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC4076]
 gi|189354902|gb|EDU73321.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC4401]
 gi|189359722|gb|EDU78141.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365562|gb|EDU83978.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370182|gb|EDU88598.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC869]
 gi|189375715|gb|EDU94131.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC508]
 gi|190901676|gb|EDV61432.1| flagellar biosynthetic protein FliP [Escherichia coli B7A]
 gi|192925965|gb|EDV80611.1| flagellar biosynthetic protein FliP [Escherichia coli E22]
 gi|192955543|gb|EDV86022.1| flagellar biosynthetic protein FliP [Escherichia coli E110019]
 gi|194412026|gb|EDX28338.1| flagellar biosynthetic protein FliP [Escherichia coli B171]
 gi|194421480|gb|EDX37494.1| flagellar biosynthetic protein FliP [Escherichia coli 101-1]
 gi|208725166|gb|EDZ74873.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731278|gb|EDZ79967.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739708|gb|EDZ87390.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC4042]
 gi|209161943|gb|ACI39376.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC4115]
 gi|209766788|gb|ACI81706.1| flagellar biosynthetic protein FliP [Escherichia coli]
 gi|209766790|gb|ACI81707.1| flagellar biosynthetic protein FliP [Escherichia coli]
 gi|209766792|gb|ACI81708.1| flagellar biosynthetic protein FliP [Escherichia coli]
 gi|209766794|gb|ACI81709.1| flagellar biosynthetic protein FliP [Escherichia coli]
 gi|209766796|gb|ACI81710.1| flagellar biosynthetic protein FliP [Escherichia coli]
 gi|217318163|gb|EEC26590.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           TW14588]
 gi|218352285|emb|CAU98042.1| flagellar biosynthesis protein [Escherichia coli 55989]
 gi|218361296|emb|CAQ98880.1| flagellar biosynthesis protein [Escherichia coli IAI1]
 gi|226900664|gb|EEH86923.1| flagellar biosynthetic protein fliP [Escherichia sp. 3_2_53FAA]
 gi|238861098|gb|ACR63096.1| flagellar biosynthesis protein [Escherichia coli BW2952]
 gi|253324147|gb|ACT28749.1| flagellar biosynthetic protein FliP [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254592998|gb|ACT72359.1| flagellar biosynthesis protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|257759494|dbj|BAI30991.1| flagellar biosynthesis protein FliP [Escherichia coli O103:H2 str.
           12009]
 gi|260448939|gb|ACX39361.1| flagellar biosynthetic protein FliP [Escherichia coli DH1]
 gi|284921856|emb|CBG34931.1| flagellar biosynthetic protein FliP [Escherichia coli 042]
 gi|290762998|gb|ADD56959.1| Flagellar biosynthetic protein fliP precursor [Escherichia coli
           O55:H7 str. CB9615]
 gi|291323158|gb|EFE62586.1| flagellar biosynthetic protein FliP [Escherichia coli B088]
 gi|291432906|gb|EFF05885.1| flagellar biosynthetic protein FliP [Escherichia coli B185]
 gi|299877709|gb|EFI85920.1| flagellar biosynthetic protein FliP [Escherichia coli MS 196-1]
 gi|300412824|gb|EFJ96134.1| flagellar biosynthetic protein FliP [Escherichia coli MS 115-1]
 gi|300419852|gb|EFK03163.1| flagellar biosynthetic protein FliP [Escherichia coli MS 182-1]
 gi|308120395|gb|EFO57657.1| flagellar biosynthetic protein FliP [Escherichia coli MS 145-7]
 gi|310332430|gb|EFP99665.1| flagellar biosynthetic protein FliP [Escherichia coli 1827-70]
 gi|315136585|dbj|BAJ43744.1| flagellar biosynthetic protein fliP precursor [Escherichia coli
           DH1]
 gi|315286656|gb|EFU46089.1| flagellar biosynthetic protein FliP [Escherichia coli MS 110-3]
 gi|320191922|gb|EFW66569.1| Flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str.
           EC1212]
 gi|320198639|gb|EFW73239.1| Flagellar biosynthesis protein FliP [Escherichia coli EC4100B]
 gi|320641796|gb|EFX11184.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str.
           G5101]
 gi|320647155|gb|EFX15988.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H- str.
           493-89]
 gi|320652439|gb|EFX20737.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H- str.
           H 2687]
 gi|320658041|gb|EFX25803.1| flagellar biosynthesis protein FliP [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320658613|gb|EFX26307.1| flagellar biosynthesis protein FliP [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320668511|gb|EFX35338.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323158573|gb|EFZ44587.1| flagellar biosynthetic protein FliP [Escherichia coli E128010]
 gi|323174672|gb|EFZ60292.1| flagellar biosynthetic protein FliP [Escherichia coli LT-68]
 gi|323183932|gb|EFZ69319.1| flagellar biosynthetic protein FliP [Escherichia coli 1357]
 gi|323948348|gb|EGB44335.1| flagellar biosynthetic protein FliP [Escherichia coli H120]
 gi|323956344|gb|EGB52087.1| flagellar biosynthetic protein FliP [Escherichia coli H263]
 gi|324018857|gb|EGB88076.1| flagellar biosynthetic protein FliP [Escherichia coli MS 117-3]
 gi|326342359|gb|EGD66140.1| Flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str.
           1044]
 gi|326344863|gb|EGD68610.1| Flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str.
           1125]
 gi|331039367|gb|EGI11587.1| flagellar biosynthetic protein FliP [Escherichia coli H736]
 gi|331074290|gb|EGI45610.1| flagellar biosynthetic protein FliP [Escherichia coli H591]
 gi|332101237|gb|EGJ04583.1| flagellar biosynthesis protein [Shigella sp. D9]
          Length = 245

 Score =  194 bits (493), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 102/239 (42%), Positives = 157/239 (65%), Gaps = 9/239 (3%)

Query: 9   LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66
           L+L+TP L FA+  L  + + P      +W   V+T    T L+  P +L+M+T F R I
Sbjct: 12  LWLITP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +I+   A++
Sbjct: 69  IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           + A+P   FM   TRE DL LF  +A++      +   + +  RIL+P+++ SEL+ +F+
Sbjct: 129 KGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQ 184

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243


>gi|26248217|ref|NP_754257.1| flagellar biosynthesis protein FliP [Escherichia coli CFT073]
 gi|110642054|ref|YP_669784.1| flagellar biosynthesis protein FliP [Escherichia coli 536]
 gi|110805917|ref|YP_689437.1| flagellar biosynthesis protein FliP [Shigella flexneri 5 str. 8401]
 gi|161485898|ref|NP_707833.2| flagellar biosynthesis protein FliP [Shigella flexneri 2a str. 301]
 gi|191173282|ref|ZP_03034812.1| flagellar biosynthetic protein FliP [Escherichia coli F11]
 gi|218699491|ref|YP_002407120.1| flagellar biosynthesis protein FliP [Escherichia coli IAI39]
 gi|227885623|ref|ZP_04003428.1| flagellar biosynthesis protein FliP [Escherichia coli 83972]
 gi|300940403|ref|ZP_07154988.1| flagellar biosynthetic protein FliP [Escherichia coli MS 21-1]
 gi|300975537|ref|ZP_07173048.1| flagellar biosynthetic protein FliP [Escherichia coli MS 45-1]
 gi|301050691|ref|ZP_07197552.1| flagellar biosynthetic protein FliP [Escherichia coli MS 185-1]
 gi|306814229|ref|ZP_07448395.1| flagellar biosynthesis protein FliP [Escherichia coli NC101]
 gi|331647542|ref|ZP_08348634.1| flagellar biosynthetic protein FliP [Escherichia coli M605]
 gi|26108621|gb|AAN80824.1|AE016762_77 Flagellar biosynthetic protein fliP precursor [Escherichia coli
           CFT073]
 gi|110343646|gb|ABG69883.1| flagellar biosynthetic protein FliP precursor [Escherichia coli
           536]
 gi|110615465|gb|ABF04132.1| flagellar biosynthetic protein FliP [Shigella flexneri 5 str. 8401]
 gi|190906399|gb|EDV66008.1| flagellar biosynthetic protein FliP [Escherichia coli F11]
 gi|218369477|emb|CAR17242.1| flagellar biosynthesis protein [Escherichia coli IAI39]
 gi|222033687|emb|CAP76428.1| flagellar biosynthetic protein fliP [Escherichia coli LF82]
 gi|227837196|gb|EEJ47662.1| flagellar biosynthesis protein FliP [Escherichia coli 83972]
 gi|281179010|dbj|BAI55340.1| flagellar biosynthetic protein FliP [Escherichia coli SE15]
 gi|300297614|gb|EFJ53999.1| flagellar biosynthetic protein FliP [Escherichia coli MS 185-1]
 gi|300410306|gb|EFJ93844.1| flagellar biosynthetic protein FliP [Escherichia coli MS 45-1]
 gi|300454797|gb|EFK18290.1| flagellar biosynthetic protein FliP [Escherichia coli MS 21-1]
 gi|305852388|gb|EFM52839.1| flagellar biosynthesis protein FliP [Escherichia coli NC101]
 gi|307553961|gb|ADN46736.1| flagellar biosynthetic protein FliP [Escherichia coli ABU 83972]
 gi|312946541|gb|ADR27368.1| flagellar biosynthesis protein FliP [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315290265|gb|EFU49643.1| flagellar biosynthetic protein FliP [Escherichia coli MS 153-1]
 gi|315296482|gb|EFU55779.1| flagellar biosynthetic protein FliP [Escherichia coli MS 16-3]
 gi|320194339|gb|EFW68970.1| Flagellar biosynthesis protein FliP [Escherichia coli WV_060327]
 gi|323186704|gb|EFZ72026.1| flagellar biosynthetic protein FliP [Escherichia coli RN587/1]
 gi|324005853|gb|EGB75072.1| flagellar biosynthetic protein FliP [Escherichia coli MS 57-2]
 gi|324013503|gb|EGB82722.1| flagellar biosynthetic protein FliP [Escherichia coli MS 60-1]
 gi|330911754|gb|EGH40264.1| flagellar biosynthesis protein FliP [Escherichia coli AA86]
 gi|331043266|gb|EGI15404.1| flagellar biosynthetic protein FliP [Escherichia coli M605]
 gi|333004053|gb|EGK23587.1| flagellar biosynthetic protein FliP [Shigella flexneri K-272]
 gi|333017826|gb|EGK37133.1| flagellar biosynthetic protein FliP [Shigella flexneri K-227]
          Length = 245

 Score =  194 bits (493), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 102/239 (42%), Positives = 157/239 (65%), Gaps = 9/239 (3%)

Query: 9   LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66
           L+L+TP L FA+  L  + + P      +W   V+T    T L+  P +L+M+T F R I
Sbjct: 12  LWLITP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +I+   A++
Sbjct: 69  IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           + A+P   FM   TRE DL LF  +A++      +   + +  RIL+P+++ SEL+ +F+
Sbjct: 129 KGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQ 184

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243


>gi|329890585|ref|ZP_08268928.1| flagellar biosynthetic protein FliP [Brevundimonas diminuta ATCC
           11568]
 gi|328845886|gb|EGF95450.1| flagellar biosynthetic protein FliP [Brevundimonas diminuta ATCC
           11568]
          Length = 238

 Score =  194 bits (493), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 95/218 (43%), Positives = 147/218 (67%), Gaps = 4/218 (1%)

Query: 28  NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87
           ++ +   ++  +V+  G+ T+LS+AP ++IM T F R ++V S+LRT +GM   PPN V+
Sbjct: 18  DLGSGAGLTQRVVQLVGLMTVLSLAPSIVIMTTSFVRIVVVLSLLRTALGMQQSPPNAVL 77

Query: 88  ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147
           +SLALF++  VM PT   + + GI+PLM+ Q+    A    +EP   FM    +  DL+L
Sbjct: 78  VSLALFLSAIVMGPTWQDAYDSGIRPLMDQQMELPQAFDAASEPVKTFMLAQVKPDDLAL 137

Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
           F  ++       D+     +  R++ P+FMISEL+ +F IGFL+ +PFL+ID++VA+++M
Sbjct: 138 FTRLSRV-EAPADV---QDLPLRVVTPAFMISELKTAFTIGFLLFVPFLVIDLVVASVLM 193

Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +MGMMMLPP  +SLPFK+IFFVL+DGW L+  +LV+SF
Sbjct: 194 SMGMMMLPPVVVSLPFKLIFFVLVDGWRLVAGSLVESF 231


>gi|167585022|ref|ZP_02377410.1| flagellar biosynthesis protein FliP [Burkholderia ubonensis Bu]
          Length = 253

 Score =  194 bits (493), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 93/206 (45%), Positives = 142/206 (68%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T  + T+LS  P +L+M+T F R IIV S+LR  +G  S PPN V++ LA+F+TF+VM
Sbjct: 51  VQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQALGTSSTPPNQVLVGLAMFLTFFVM 110

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP LDR+   G +P  +  +    A+QR   PF  FM   TRE DL+LF  ++ ++    
Sbjct: 111 SPVLDRAYNDGYKPFSDGSVPMEQAVQRGVAPFKGFMLKQTRETDLALFAKISKAA---- 166

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +   + +   +L+P+F+ SEL+  F+IGF I +PFLIIDM+VA+++M+MGMMM+ P+++
Sbjct: 167 PMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPSTV 226

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FV++DGW LL+ +L +SF
Sbjct: 227 SLPFKLMLFVVVDGWQLLLGSLAQSF 252


>gi|194434965|ref|ZP_03067208.1| flagellar biosynthetic protein FliP [Shigella dysenteriae 1012]
 gi|194416800|gb|EDX32926.1| flagellar biosynthetic protein FliP [Shigella dysenteriae 1012]
 gi|320182735|gb|EFW57619.1| Flagellar biosynthesis protein FliP [Shigella boydii ATCC 9905]
 gi|332095503|gb|EGJ00519.1| flagellar biosynthetic protein FliP [Shigella dysenteriae 155-74]
          Length = 245

 Score =  194 bits (493), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 102/239 (42%), Positives = 157/239 (65%), Gaps = 9/239 (3%)

Query: 9   LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66
           L+L+TP L FA+  L  + + P      +W   V+T    T L+  P +L+M+T F R I
Sbjct: 12  LWLITP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +I+   A++
Sbjct: 69  IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           + A+P   FM   TRE DL LF  +A++      +   + +  RIL+P+++ SEL+ +F+
Sbjct: 129 KGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQ 184

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243


>gi|331657994|ref|ZP_08358956.1| flagellar biosynthetic protein FliP [Escherichia coli TA206]
 gi|331056242|gb|EGI28251.1| flagellar biosynthetic protein FliP [Escherichia coli TA206]
          Length = 245

 Score =  194 bits (493), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 102/239 (42%), Positives = 157/239 (65%), Gaps = 9/239 (3%)

Query: 9   LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66
           L+L+TP L FA+  L  + + P      +W   V+T    T L+  P +L+M+T F R I
Sbjct: 12  LWLITP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +I+   A++
Sbjct: 69  IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           + A+P   FM   TRE DL LF  +A++      +   + +  RIL+P+++ SEL+ +F+
Sbjct: 129 KGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQ 184

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243


>gi|253573534|ref|ZP_04850877.1| flagellar biosynthetic protein FliP [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251847062|gb|EES75067.1| flagellar biosynthetic protein FliP [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 255

 Score =  194 bits (493), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 92/199 (46%), Positives = 141/199 (70%), Gaps = 4/199 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T+LSIAP +L+++T F R ++V   +R+ +G   +PPN V+I LALF+T ++MSPTL   
Sbjct: 59  TVLSIAPAILVLMTSFTRIVVVLGFVRSSLGTQQMPPNQVLIGLALFLTLFIMSPTLSTI 118

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
            E+ +QP +  +IT+T A+ + A P   FM ++TR KDL LFM         +     + 
Sbjct: 119 NEVAVQPYIKGEITQTEALDKAAVPMKKFMYSHTRTKDLQLFMGYTKMEKPKS----YED 174

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
           I   +++P+F ISEL+ +F++GF+I +PFLIID++V++++MAMGMMMLPP  ISLPFK++
Sbjct: 175 IPLSVMVPAFAISELKTAFQMGFMIFIPFLIIDIVVSSVLMAMGMMMLPPVMISLPFKIL 234

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FVL+DGW L+V++L+ SF
Sbjct: 235 LFVLVDGWYLIVKSLLVSF 253


>gi|168244830|ref|ZP_02669762.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194448965|ref|YP_002046030.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|238912448|ref|ZP_04656285.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|194407269|gb|ACF67488.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205336386|gb|EDZ23150.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
          Length = 245

 Score =  194 bits (493), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 97/229 (42%), Positives = 150/229 (65%), Gaps = 6/229 (2%)

Query: 19  AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
           A + L  +++ P      +W   V+T    T L+  P +L+M+T F R IIVF +LR  +
Sbjct: 19  AAAQLPGLISQPLAGGGQSWSLSVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNAL 78

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G  S PPN V++ LALF+TF++MSP +D+      QP    +I+   A+ + A+P   FM
Sbjct: 79  GTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQKISMQEALDKGAQPLRAFM 138

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
              TRE DL+LF  +A+S      +   + +  RIL+P+++ SEL+ +F+IGF I +PFL
Sbjct: 139 LRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFL 194

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 195 IIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243


>gi|296103568|ref|YP_003613714.1| flagellar biosynthesis protein FliP [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058027|gb|ADF62765.1| flagellar biosynthesis protein FliP [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 245

 Score =  194 bits (493), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 94/227 (41%), Positives = 152/227 (66%), Gaps = 6/227 (2%)

Query: 21  SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           + L  +++ P      +W   V+T    T L+  P +L+M+T F R IIVF +LR  +G 
Sbjct: 21  AQLPGLVSTPLAGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIIIVFGLLRNALGT 80

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
            S PPN V++ LALF+TF++MSP +D+      QP   ++I+   A+++ A+P   FM  
Sbjct: 81  PSAPPNQVLLGLALFLTFFIMSPVIDKIYTDAYQPFSEDKISMQEALEKGAQPLREFMLR 140

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
            TRE DL+LF  ++++     ++   + +  RIL+P+++ SEL+ +F+IGF I +PFLII
Sbjct: 141 QTREADLALFARLSNTG----ELQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLII 196

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           D+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 197 DLVIASVLMALGMMMVPPATIALPFKIMLFVLVDGWQLLVSSLAQSF 243


>gi|153941323|ref|YP_001391949.1| flagellar biosynthesis protein FliP [Clostridium botulinum F str.
           Langeland]
 gi|152937219|gb|ABS42717.1| flagellar biosynthetic protein FliP [Clostridium botulinum F str.
           Langeland]
 gi|295319967|gb|ADG00345.1| flagellar biosynthetic protein FliP [Clostridium botulinum F str.
           230613]
          Length = 258

 Score =  194 bits (493), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 97/199 (48%), Positives = 140/199 (70%), Gaps = 4/199 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T+L++ P  ++M+T F R I+VF  LR  MG    PPN V+I LALF+T ++M P     
Sbjct: 63  TVLTLLPSFIVMMTSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMYPVYSEV 122

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
               IQP M N+IT+  A++  A+P   FM   TR+KDL LF+D+A     N  +TK++ 
Sbjct: 123 NTKAIQPYMKNKITQEQAVEIGAKPLRQFMLKQTRQKDLKLFVDLAKP---NFKVTKDNA 179

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
             Y I++P+F+ISEL+ +F+IGFL+ +PFLIID++VA+++M+MGM MLPP  ISLPFK++
Sbjct: 180 PLY-IVVPAFIISELKTAFQIGFLLFIPFLIIDLVVASVLMSMGMFMLPPVMISLPFKLL 238

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FV++DGW LLV++LV SF
Sbjct: 239 LFVMVDGWYLLVKSLVMSF 257


>gi|167834870|ref|ZP_02461753.1| flagellar biosynthesis protein FliP [Burkholderia thailandensis
           MSMB43]
          Length = 253

 Score =  194 bits (493), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 94/206 (45%), Positives = 139/206 (67%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T  + T+LS  P +L+M+T F R IIV S+LR  +G  S PPN V++ LALF+T +VM
Sbjct: 51  VQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQALGTASTPPNQVLVGLALFLTLFVM 110

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP LDR+     +P     +    A+QR A PF  FM   TRE DL+LF  ++ ++    
Sbjct: 111 SPVLDRAYADAYKPFSEGTLQMDQAVQRGAAPFKTFMLKQTRETDLALFAKISKAAP--- 167

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +   + +   +L+P+F+ SEL+  F+IGF I +PFLIIDM+VA+++M+MGMMM+ P ++
Sbjct: 168 -MQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATV 226

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 227 SLPFKLMLFVLVDGWQLLIGSLAQSF 252


>gi|161613452|ref|YP_001587417.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168259734|ref|ZP_02681707.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|161362816|gb|ABX66584.1| hypothetical protein SPAB_01169 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|205351247|gb|EDZ37878.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 245

 Score =  194 bits (493), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 97/229 (42%), Positives = 150/229 (65%), Gaps = 6/229 (2%)

Query: 19  AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
           A + L  +++ P      +W   V+T    T L+  P +L+M+T F R IIVF +LR  +
Sbjct: 19  AAAQLPGLISQPLAGGGQSWSLSVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNAL 78

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G  S PPN V++ LALF+TF++MSP +D+      QP    +I+   A+ + A+P   FM
Sbjct: 79  GTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQKISMQEALDKGAQPLRAFM 138

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
              TRE DL+LF  +A+S      +   + +  RIL+P+++ SEL+ +F+IGF I +PFL
Sbjct: 139 LRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFL 194

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 195 IIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243


>gi|170698077|ref|ZP_02889158.1| flagellar biosynthetic protein FliP [Burkholderia ambifaria
           IOP40-10]
 gi|170137038|gb|EDT05285.1| flagellar biosynthetic protein FliP [Burkholderia ambifaria
           IOP40-10]
          Length = 253

 Score =  194 bits (493), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 97/235 (41%), Positives = 152/235 (64%), Gaps = 7/235 (2%)

Query: 14  PELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
           P L  A+++     N    P   +  +  V+T  + T+LS  P +L+M+T F R IIV S
Sbjct: 22  PALACAQAAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTRIIIVLS 81

Query: 71  ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
           +LR  +G  + PPN V++ LA+F+TF+VMSP LDR+   G +P  +  +    A++R   
Sbjct: 82  LLRQALGTATTPPNQVLVGLAMFLTFFVMSPVLDRAYADGYKPFSDGSMPMEQAVRRGVA 141

Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
           PF  FM   TRE DL+LF  ++ ++     +   + +   +L+P+F+ SEL+  F+IGF 
Sbjct: 142 PFKTFMLKQTRETDLALFAKISKAA----PMQGPEDVPLSLLVPAFVTSELKTGFQIGFT 197

Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           I +PFLIIDM+VA+++M+MGMMM+ P+++SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 198 IFIPFLIIDMVVASVLMSMGMMMVSPSTVSLPFKLMLFVLVDGWQLLIGSLAQSF 252


>gi|292669767|ref|ZP_06603193.1| flagellar biosynthetic protein FliP [Selenomonas noxia ATCC 43541]
 gi|292648564|gb|EFF66536.1| flagellar biosynthetic protein FliP [Selenomonas noxia ATCC 43541]
          Length = 249

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 93/216 (43%), Positives = 151/216 (69%), Gaps = 7/216 (3%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P D++ S   ++   + TI+S+AP +L+M T F R ++V   LR  +   +VPPN V+I+
Sbjct: 40  PQDVATS---MQLLAVLTIVSLAPAILVMTTSFVRIVVVIGFLRNALSTQNVPPNQVVIA 96

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           L+LF++FY+M+P   ++ E GIQP +  +I++  A++ V +P   FM   TRE DL+LF+
Sbjct: 97  LSLFLSFYIMAPYWGQANENGIQPYLAGEISQEQALENVVDPMREFMFRQTRESDLALFV 156

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
           +++ +   +      + +    LIP+F+ISEL+ +F+IGF+I +PF++IDMIVA+ +M+M
Sbjct: 157 NLSDAPRPD----GPEDVSTFTLIPAFIISELKTAFQIGFMIYIPFIVIDMIVASTLMSM 212

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMMLPP  ISLPFK++ FV++DGW LL+++L+ SF
Sbjct: 213 GMMMLPPVMISLPFKILLFVMVDGWHLLIQSLIMSF 248


>gi|251797428|ref|YP_003012159.1| flagellar biosynthetic protein FliP [Paenibacillus sp. JDR-2]
 gi|247545054|gb|ACT02073.1| flagellar biosynthetic protein FliP [Paenibacillus sp. JDR-2]
          Length = 256

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 91/194 (46%), Positives = 140/194 (72%), Gaps = 4/194 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +L+++T F R +IV   +RT +G   +PPN V+I LA+F+TF++M+PT  +  E+ +
Sbjct: 65  APAILVLMTSFTRIVIVLGFVRTSLGTQQMPPNQVLIGLAMFLTFFIMAPTFSQVNEVAL 124

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           QP +  +IT+T A+++ A+P   FM ++TREKDL LF++   +        K   I   +
Sbjct: 125 QPYLKGEITQTVALEKAADPMKKFMISHTREKDLLLFLNYTKTEKPE----KYQDIPITV 180

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           L+P++ ISEL+ +F++GF+I +PFL+IDMIVA+ +MAMGMMMLPP  ISLPFK++ FVL+
Sbjct: 181 LVPAYAISELKTAFQMGFMIFIPFLVIDMIVASTLMAMGMMMLPPVMISLPFKLLLFVLV 240

Query: 232 DGWSLLVENLVKSF 245
           DGW L+V++L+ SF
Sbjct: 241 DGWYLIVKSLLLSF 254


>gi|114764047|ref|ZP_01443286.1| flagellar biosynthetic protein FliP [Pelagibaca bermudensis
           HTCC2601]
 gi|114543405|gb|EAU46420.1| flagellar biosynthetic protein FliP [Roseovarius sp. HTCC2601]
          Length = 241

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 103/245 (42%), Positives = 155/245 (63%), Gaps = 5/245 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           M R    AL L+   L  A ++    +++    S++   ++   + T+LS+AP + IMVT
Sbjct: 1   MWRAALSALILIA--LSTAATAQELRLDLGGGGSLTATSLQLIALITLLSLAPGIAIMVT 58

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
           CFP  + V +ILR  +G+   PPN++I+SLALF+T++VM PT   + + G++PL++ +I+
Sbjct: 59  CFPFLVTVLAILRQAVGLQQSPPNMLIVSLALFLTYFVMEPTFTAAWQDGLRPLIDEEIS 118

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
               ++R   PF  FM   T   D + F  MA      +  T        +LIPSFM+SE
Sbjct: 119 VEEGVERTLVPFRGFMAGRT---DANTFSSMADLRPDASGETLRPEAPLSLLIPSFMLSE 175

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           + R+F++GFLI LPFLIID++VA I+M+MGMMM+PP  +SLPFK+ FFV+ DGWSLL   
Sbjct: 176 IARAFQVGFLIFLPFLIIDLVVAAILMSMGMMMVPPAIVSLPFKLAFFVIADGWSLLAGA 235

Query: 241 LVKSF 245
           LV+S+
Sbjct: 236 LVRSY 240


>gi|221214540|ref|ZP_03587510.1| flagellar biosynthetic protein FliP [Burkholderia multivorans CGD1]
 gi|221165430|gb|EED97906.1| flagellar biosynthetic protein FliP [Burkholderia multivorans CGD1]
          Length = 253

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 93/206 (45%), Positives = 142/206 (68%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T  + T+LS  P +++M+T F R IIV S+LR  +G  + PPN V++ LALF+TF+VM
Sbjct: 51  VQTMLLLTMLSFLPAMVLMMTSFTRIIIVLSLLRQALGTATTPPNQVLVGLALFLTFFVM 110

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP LDR+   G +P  +  +    A+QR   PF  FM   TRE DL+LF  ++ ++    
Sbjct: 111 SPVLDRAYTDGYKPFSDGTLPMEQAVQRGVAPFKGFMLKQTRETDLALFAKISKAA---- 166

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +   + +   +L+P+F+ SEL+  F+IGF I +PFLIIDM+VA+++M+MGMMM+ P+++
Sbjct: 167 PMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPSTV 226

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 227 SLPFKLMLFVLVDGWQLLIGSLAQSF 252


>gi|312172107|emb|CBX80364.1| Flagellar biosynthetic protein FliP precursor [Erwinia amylovora
           ATCC BAA-2158]
          Length = 245

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 101/240 (42%), Positives = 157/240 (65%), Gaps = 9/240 (3%)

Query: 8   ALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRF 65
           ALF++ P  V+A+  L  +++ P      +W   V+T    T L+  P +L+M+T F R 
Sbjct: 11  ALFMLAPN-VYAQ--LPGLISQPTANGGQSWSLPVQTLVFITSLTFLPAILLMMTSFTRI 67

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
           IIVF +LR  +G  S PPN V++ L+LF+TF++M P  D+      QP   ++I+   AI
Sbjct: 68  IIVFGLLRNALGTPSAPPNQVLLGLSLFLTFFIMGPVFDKIYTDAYQPFSEDKISMQEAI 127

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
            + A+P   FM   TRE DL+LF  +A++      I   + +  RIL+P+++ SEL+ +F
Sbjct: 128 DKGAQPLREFMLRQTREADLALFARLANTP----PIAGPEAVPMRILLPAYVTSELKTAF 183

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +IGF + +PFLIID++VA+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 184 QIGFTVFIPFLIIDLVVASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVSSLAQSF 243


>gi|221201779|ref|ZP_03574816.1| flagellar biosynthetic protein FliP [Burkholderia multivorans
           CGD2M]
 gi|221207716|ref|ZP_03580724.1| flagellar biosynthetic protein FliP [Burkholderia multivorans CGD2]
 gi|221172562|gb|EEE05001.1| flagellar biosynthetic protein FliP [Burkholderia multivorans CGD2]
 gi|221178199|gb|EEE10609.1| flagellar biosynthetic protein FliP [Burkholderia multivorans
           CGD2M]
          Length = 253

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 93/206 (45%), Positives = 142/206 (68%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T  + T+LS  P +++M+T F R IIV S+LR  +G  + PPN V++ LALF+TF+VM
Sbjct: 51  VQTMLLLTMLSFLPAMVLMMTSFTRIIIVLSLLRQALGTATTPPNQVLVGLALFLTFFVM 110

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP LDR+   G +P  +  +    A+QR   PF  FM   TRE DL+LF  ++ ++    
Sbjct: 111 SPVLDRAYTDGYKPFSDGTLPMEQAVQRGVAPFKGFMLKQTRETDLALFAKISKAA---- 166

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +   + +   +L+P+F+ SEL+  F+IGF I +PFLIIDM+VA+++M+MGMMM+ P+++
Sbjct: 167 PMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPSTV 226

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 227 SLPFKLMLFVLVDGWQLLIGSLAQSF 252


>gi|148266209|ref|YP_001232915.1| flagellar biosynthesis protein FliP [Geobacter uraniireducens Rf4]
 gi|146399709|gb|ABQ28342.1| flagellar biosynthetic protein FliP [Geobacter uraniireducens Rf4]
          Length = 251

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 94/216 (43%), Positives = 144/216 (66%), Gaps = 7/216 (3%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           PAD+++   +++ F + T+LS+AP LL+M T F R ++V S LR  +G    P N +II 
Sbjct: 42  PADVAV---VLQIFFLMTVLSLAPGLLMMTTSFTRIVVVLSFLRNAIGTQQAPSNQIIIG 98

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           L+LF+TF++M+P   +     +QP     I++  A +R   P   FM +  REKDL+LF+
Sbjct: 99  LSLFLTFFIMAPVWQQINTQALQPYKAQTISQEEAFKRAVAPVRKFMLSQVREKDLALFL 158

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
            ++            D I    LIP++M+SEL+ +F+IGFL+ +PFL++DM+VA+++M+M
Sbjct: 159 SLSKLPRPK----NADDIPTLTLIPAYMVSELKTAFQIGFLVFIPFLVLDMVVASVLMSM 214

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMMLPP  ISLPFK++ FVL+DGW L++ +LVKSF
Sbjct: 215 GMMMLPPVMISLPFKILLFVLVDGWGLVIGSLVKSF 250


>gi|215487148|ref|YP_002329579.1| flagellar biosynthesis protein FliP [Escherichia coli O127:H6 str.
           E2348/69]
 gi|215265220|emb|CAS09610.1| flagellar biosynthesis protein FliP [Escherichia coli O127:H6 str.
           E2348/69]
          Length = 245

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 102/239 (42%), Positives = 157/239 (65%), Gaps = 9/239 (3%)

Query: 9   LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66
           L+LVTP L FA+  L  + + P      +W   V+T    T L+  P +L+M+T F R I
Sbjct: 12  LWLVTP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +I+   A++
Sbjct: 69  IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           + A+P   FM   TRE DL +F  +A++      +   + +  RIL+P+++ SEL+ +F+
Sbjct: 129 KGAQPLREFMLRQTREADLGVFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQ 184

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243


>gi|312173310|emb|CBX81565.1| Flagellar biosynthetic protein FliP precursor [Erwinia amylovora
           ATCC BAA-2158]
          Length = 247

 Score =  193 bits (491), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 92/206 (44%), Positives = 142/206 (68%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T  + + L+  P +L+M+T F R IIV  ++R  +G  + PPN V++ LALF+TFYVM
Sbjct: 44  VQTLVLLSSLTFLPAILLMMTGFTRIIIVLGLMRNALGTPTAPPNQVLVGLALFLTFYVM 103

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP  ++  E   QPL  ++IT   A+++  +P   FM + TRE DL++F  MA +     
Sbjct: 104 SPVFNQIYEQAWQPLQEDKITMEVALEQGVKPLRAFMLDQTRENDLAMFAQMAKAG---- 159

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           +    + +   IL+P+F+ SEL+ +F+IGF I +PFLIID++VA+I+MA+GMMM+PP +I
Sbjct: 160 EFKGPEEVPLGILVPAFVTSELKTAFQIGFTIFIPFLIIDLVVASILMALGMMMVPPATI 219

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           +LPFK++ FVL+DGW LL+ +L +SF
Sbjct: 220 ALPFKLMLFVLVDGWQLLMGSLAQSF 245


>gi|170769417|ref|ZP_02903870.1| flagellar biosynthetic protein FliP [Escherichia albertii TW07627]
 gi|170121741|gb|EDS90672.1| flagellar biosynthetic protein FliP [Escherichia albertii TW07627]
          Length = 245

 Score =  193 bits (491), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 103/238 (43%), Positives = 157/238 (65%), Gaps = 9/238 (3%)

Query: 10  FLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFII 67
           +LVTP L FA+  L  + + P      +W   V+T    T L+  P +L+M+T F R II
Sbjct: 13  WLVTP-LTFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIII 69

Query: 68  VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
           VF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +I+   A+++
Sbjct: 70  VFGLLRNALGTLSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALEK 129

Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
            A+P   FM   TRE DL+LF  +A+S      +   + +  RIL+P+++ SEL+ +F+I
Sbjct: 130 GAQPLREFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSELKTAFQI 185

Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 186 GFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243


>gi|154686052|ref|YP_001421213.1| flagellar biosynthesis protein FliP [Bacillus amyloliquefaciens
           FZB42]
 gi|154351903|gb|ABS73982.1| FliP [Bacillus amyloliquefaciens FZB42]
          Length = 221

 Score =  193 bits (491), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 95/218 (43%), Positives = 150/218 (68%), Gaps = 7/218 (3%)

Query: 28  NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87
           N P ++S +   V+   + T+ S+AP +LI++TCF R +IV S +RT +   ++PPN V+
Sbjct: 11  NSPTEVSST---VKLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATQNMPPNQVL 67

Query: 88  ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147
           I LALF+TF++M+PT     +  + PLM+N+I+   A  +  +P   +M  +TR+KDL+L
Sbjct: 68  IGLALFLTFFIMAPTFSEINKEALTPLMDNKISLDEAYTKAEKPIKEYMSKHTRQKDLAL 127

Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
           FM+ A      +       I    ++P++ ISEL+ +F++GF+I +PFLIIDM+VA+++M
Sbjct: 128 FMNYAKMKKPESI----QDIPLTTMVPAYAISELKTAFQMGFMIFIPFLIIDMVVASVLM 183

Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +MGMMMLPP  ISLPFK++ FVL+DGW L+V++L+ SF
Sbjct: 184 SMGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLLDSF 221


>gi|206889470|ref|YP_002249866.1| flagellar biosynthetic protein FliP [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741408|gb|ACI20465.1| flagellar biosynthetic protein FliP [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 335

 Score =  193 bits (491), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 105/242 (43%), Positives = 155/242 (64%), Gaps = 12/242 (4%)

Query: 6   FFALFLVTPELVFA--KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
           F  L +++P L FA  +S+   +    + + I  +I       T+LS  P +LIM+T F 
Sbjct: 103 FSCLLILSPTLCFAAPQSAQGGLFGFSSAIDILVFI-------TLLSFLPAVLIMMTSFT 155

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
           R +IV S+LR  +G  SVPPN VII LALF+T ++MSPT+DR       PL   +I    
Sbjct: 156 RIVIVLSLLRQALGTPSVPPNQVIIGLALFLTLFIMSPTVDRVYNEAYLPLSKKEINMEE 215

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
           AI + + PF  FM   TREKDL+LF  ++ +  +    T  D +  +I++P+F + EL+R
Sbjct: 216 AISKASVPFKEFMLKQTREKDLALFFKLSKTEVKPA--TPMD-LPMKIVVPAFALGELKR 272

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
           +FEIGFLI LPFL+ID++VA+I+++MGM M+PP  IS+PFK++ FVL+DGW L++ +L  
Sbjct: 273 AFEIGFLIFLPFLVIDIVVASILLSMGMFMVPPVMISMPFKLLLFVLVDGWQLIIGSLAG 332

Query: 244 SF 245
            F
Sbjct: 333 GF 334


>gi|254466138|ref|ZP_05079549.1| flagellar biosynthetic protein FliP [Rhodobacterales bacterium Y4I]
 gi|206687046|gb|EDZ47528.1| flagellar biosynthetic protein FliP [Rhodobacterales bacterium Y4I]
          Length = 247

 Score =  193 bits (491), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 96/212 (45%), Positives = 137/212 (64%), Gaps = 3/212 (1%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           S+S   ++   + T+LS+AP LLIM+TCFP  + V SILR G+G+   PPN+++ISLALF
Sbjct: 37  SVSARSIQLILLITVLSLAPGLLIMITCFPFLVTVLSILRQGIGLQQAPPNMLMISLALF 96

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           +T++VM P    +   GI PL+  Q+    AI R  EPF  FM N     D   F  +A 
Sbjct: 97  LTYFVMEPVFTEAWNSGISPLLEEQLEPGEAISRSLEPFRAFMANRL---DPDTFYAIAD 153

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
                  +          L+PSF++SE+ R+F+IGFL+ LPFL+ID++VA ++M+MGMMM
Sbjct: 154 LRPETQGMDPVPQAPLSALVPSFLLSEIARAFQIGFLVFLPFLVIDLVVAAVLMSMGMMM 213

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +PP  +SLPFK+ FFV+ DGWSL+   LV+S+
Sbjct: 214 VPPAIVSLPFKLAFFVVADGWSLIATALVRSY 245


>gi|324114209|gb|EGC08182.1| flagellar biosynthetic protein FliP [Escherichia fergusonii B253]
          Length = 245

 Score =  193 bits (491), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 102/239 (42%), Positives = 156/239 (65%), Gaps = 9/239 (3%)

Query: 9   LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66
           L+LVTP    A + L  ++  P      +W   V+T    T L+  P +L+M+T F R I
Sbjct: 12  LWLVTP---CALAQLPGLVTQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +I+   A++
Sbjct: 69  IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           + A+P   FM   TRE DL+LF  +A++      I   + +  RIL+P+++ SEL+ +F+
Sbjct: 129 KGAQPLREFMLRQTREADLALFARLANTG----PIQGPEVVPMRILLPAYVTSELKTAFQ 184

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243


>gi|293410304|ref|ZP_06653880.1| flagellar biosynthetic protein FliP [Escherichia coli B354]
 gi|291470772|gb|EFF13256.1| flagellar biosynthetic protein FliP [Escherichia coli B354]
          Length = 245

 Score =  193 bits (491), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 102/239 (42%), Positives = 157/239 (65%), Gaps = 9/239 (3%)

Query: 9   LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66
           L+L+TP L FA+  L  + + P      +W   V+T    T L+  P +L+M+T F R I
Sbjct: 12  LWLITP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +I+   A++
Sbjct: 69  IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           + A+P   FM   TRE DL LF  +A++      +   + +  RIL+P+++ SEL+ +F+
Sbjct: 129 KGAQPLREFMLRQTREADLGLFARLANTG----PLLGPEAVPMRILLPAYVTSELKTAFQ 184

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243


>gi|161523220|ref|YP_001578232.1| flagellar biosynthesis protein FliP [Burkholderia multivorans ATCC
           17616]
 gi|189348923|ref|YP_001944551.1| flagellar biosynthesis protein FliP [Burkholderia multivorans ATCC
           17616]
 gi|160340649|gb|ABX13735.1| flagellar biosynthetic protein FliP [Burkholderia multivorans ATCC
           17616]
 gi|189332945|dbj|BAG42015.1| flagellar biosynthetic protein [Burkholderia multivorans ATCC
           17616]
          Length = 253

 Score =  193 bits (491), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 93/206 (45%), Positives = 142/206 (68%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T  + T+LS  P +++M+T F R IIV S+LR  +G  + PPN V++ LALF+TF+VM
Sbjct: 51  VQTMLLLTMLSFLPAMVLMMTSFTRIIIVLSLLRQALGTATTPPNQVLVGLALFLTFFVM 110

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP LDR+   G +P  +  +    A+QR   PF  FM   TRE DL+LF  ++ ++    
Sbjct: 111 SPVLDRAYTDGYKPFSDGTLPMEQAVQRGVAPFKGFMLKQTRETDLALFAKISKAA---- 166

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +   + +   +L+P+F+ SEL+  F+IGF I +PFLIIDM+VA+++M+MGMMM+ P+++
Sbjct: 167 PMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPSTV 226

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 227 SLPFKLMLFVLVDGWQLLIGSLAQSF 252


>gi|205352327|ref|YP_002226128.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205272108|emb|CAR36961.1| flagellar biosynthetic protein flip precursor [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|326627377|gb|EGE33720.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 245

 Score =  193 bits (491), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 99/240 (41%), Positives = 155/240 (64%), Gaps = 9/240 (3%)

Query: 8   ALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRF 65
            L+L +P    A + L  +++ P      +W +  +T    T L+  P +L+M+T F R 
Sbjct: 11  GLWLFSPA---AAAQLPGLISQPLAGGGQSWSLSAQTLVFITSLTFLPAILLMMTSFTRI 67

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
           IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +I+   A+
Sbjct: 68  IIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQKISMQEAL 127

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
            + A+P   FM   TRE DL+LF  +A+S      +   + +  RIL+P+++ SEL+ +F
Sbjct: 128 DKGAQPLRAFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSELKTAF 183

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 184 QIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243


>gi|126665005|ref|ZP_01735988.1| flagellar biosynthetic protein FliP [Marinobacter sp. ELB17]
 gi|126630375|gb|EBA00990.1| flagellar biosynthetic protein FliP [Marinobacter sp. ELB17]
          Length = 259

 Score =  193 bits (491), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 91/206 (44%), Positives = 141/206 (68%), Gaps = 5/206 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   + T L+  P +L+M+T F R IIVFSILR  +G+ S P N +++ LALF+T ++M
Sbjct: 57  LQILALMTALTFLPAMLMMMTSFTRIIIVFSILRQALGLQSAPSNQILLGLALFLTIFIM 116

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P L+ +  +G+QP +  ++T   A++  +EPF  FM   TRE DL LFM MA     + 
Sbjct: 117 KPVLEEANRVGLQPYLQEELTSLEAVEAASEPFKQFMLAQTRESDLGLFMRMA-----DE 171

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                + + + +L+P+F+ SEL+ +F+IGF++ +PFLIIDM+VA+++MAMGMMML P  I
Sbjct: 172 QFASPEDVTFWVLLPAFVTSELKTAFQIGFILFIPFLIIDMVVASVLMAMGMMMLSPIII 231

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW+L++  L  S+
Sbjct: 232 SLPFKIMLFVLVDGWALIMGTLAASY 257


>gi|16765317|ref|NP_460932.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167993554|ref|ZP_02574648.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|1706856|sp|P54700|FLIP_SALTY RecName: Full=Flagellar biosynthetic protein fliP; Flags: Precursor
 gi|1066863|gb|AAB81319.1| fliP [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|16420514|gb|AAL20891.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|205328373|gb|EDZ15137.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261247145|emb|CBG24968.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267993968|gb|ACY88853.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301158493|emb|CBW18003.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912969|dbj|BAJ36943.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321224624|gb|EFX49687.1| Flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323130258|gb|ADX17688.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332988868|gb|AEF07851.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 245

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 99/240 (41%), Positives = 155/240 (64%), Gaps = 9/240 (3%)

Query: 8   ALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRF 65
            L+L +P    A + L  +++ P      +W   V+T    T L+  P +L+M+T F R 
Sbjct: 11  GLWLFSPA---AAAQLPGLISQPLAGGGQSWSLSVQTLVFITSLTFLPAILLMMTSFTRI 67

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
           IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +I+   A+
Sbjct: 68  IIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQKISMQEAL 127

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
            + A+P   FM   TRE DL+LF  +A+S      +   + +  RIL+P+++ SEL+ +F
Sbjct: 128 DKGAQPLRAFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSELKTAF 183

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LL+ +L +SF
Sbjct: 184 QIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLMGSLAQSF 243


>gi|331006679|ref|ZP_08329957.1| Flagellar biosynthesis protein fliP [gamma proteobacterium
           IMCC1989]
 gi|330419511|gb|EGG93899.1| Flagellar biosynthesis protein fliP [gamma proteobacterium
           IMCC1989]
          Length = 280

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 94/199 (47%), Positives = 137/199 (68%), Gaps = 4/199 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T L+  P +LIM+T F R IIVF+ILR  +G+   P N ++I + LF+T ++M+P ++  
Sbjct: 84  TTLTFIPAILIMMTSFTRIIIVFAILRQALGLQQSPSNQILIGMTLFLTLFIMTPVINEV 143

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
            E  +QP +  QIT   AI +V EPF  FM   TRE DL LFMD+A+    +T     + 
Sbjct: 144 NEQALQPYIAEQITSDQAIDKVIEPFHRFMIGQTRESDLKLFMDIANVPAVDT----REE 199

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
           +   +LIPSF+ SEL+ +F+IGF++ +PFL+ID++VA+++MAMGMMML P  ISLPFK++
Sbjct: 200 VPLTVLIPSFITSELKTAFQIGFILFIPFLVIDLVVASVLMAMGMMMLSPLIISLPFKIM 259

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FVL+DGW++L+  L  SF
Sbjct: 260 LFVLVDGWAMLMGTLAASF 278


>gi|237755394|ref|ZP_04584021.1| flagellar biosynthetic protein FliP [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692435|gb|EEP61416.1| flagellar biosynthetic protein FliP [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 338

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 101/196 (51%), Positives = 138/196 (70%), Gaps = 5/196 (2%)

Query: 50  SIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEM 109
           SIAP LLI VT F R +IV S+LR  +G+ + PPN VI+ LALF+T +VM PT ++  E+
Sbjct: 147 SIAPALLISVTAFVRIVIVLSLLRHALGIPTAPPNQVIVGLALFLTIFVMKPTFEKINEV 206

Query: 110 GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169
            I P +  QI++  AI+   EP   FM  NTR++DL LF+D+A+       ++  D I  
Sbjct: 207 SISPYLKKQISDIQAIENAKEPLKEFMLKNTRKEDLKLFLDLANEK----PLSPKD-ISI 261

Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
             LIP+FMISE++ +FEI F+I LPFL+ID IVA+I+M+MGMMM+PP  ISLPFK++ FV
Sbjct: 262 STLIPAFMISEIKTAFEIVFIIYLPFLVIDFIVASILMSMGMMMIPPMFISLPFKLMLFV 321

Query: 230 LIDGWSLLVENLVKSF 245
           L DG+ LLV+ LV S+
Sbjct: 322 LADGFELLVKALVSSY 337


>gi|295097216|emb|CBK86306.1| flagellar biosynthetic protein FliP [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 247

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 92/193 (47%), Positives = 136/193 (70%), Gaps = 4/193 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +L+M+T F R +IV  ++R  +G  + PPN V++ LALF+TF+VMSP L++  E   Q
Sbjct: 57  PAVLLMMTGFTRIVIVLGLMRNALGTPTAPPNQVLVGLALFLTFFVMSPVLNQIYEQAWQ 116

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           PL  N+IT  TA++   +P   FM   TRE DL++F  +A    +   +T  + +   IL
Sbjct: 117 PLQANKITMETALKEGVKPLRAFMLEQTREADLAMFARIA----KTPTLTGPEDVPLSIL 172

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           +PSF+ SEL+ +F+IGF I +PFLIID++VA+I+MA+GMMM+PP +I+LPFK++ FVL+D
Sbjct: 173 VPSFVTSELKTAFQIGFTIFIPFLIIDLVVASILMALGMMMVPPATIALPFKLMLFVLVD 232

Query: 233 GWSLLVENLVKSF 245
           GW LLV +L +SF
Sbjct: 233 GWQLLVGSLAQSF 245


>gi|171316887|ref|ZP_02906096.1| flagellar biosynthetic protein FliP [Burkholderia ambifaria MEX-5]
 gi|171097968|gb|EDT42786.1| flagellar biosynthetic protein FliP [Burkholderia ambifaria MEX-5]
          Length = 253

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 92/206 (44%), Positives = 142/206 (68%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T  + T+LS  P +L+M+T F R IIV S+LR  +G  + PPN V++ LA+F+TF+VM
Sbjct: 51  VQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQALGTATTPPNQVLVGLAMFLTFFVM 110

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP LDR+   G +P  +  +    A++R   PF  FM   TRE DL+LF  ++ ++    
Sbjct: 111 SPVLDRAYADGYKPFSDGSMPMEQAVRRGVAPFKTFMLKQTRETDLALFAKISKAA---- 166

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +   + +   +L+P+F+ SEL+  F+IGF I +PFLIIDM+VA+++M+MGMMM+ P+++
Sbjct: 167 PMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPSTV 226

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 227 SLPFKLMLFVLVDGWQLLIGSLAQSF 252


>gi|172059104|ref|YP_001806756.1| flagellar biosynthesis protein FliP [Burkholderia ambifaria MC40-6]
 gi|171991621|gb|ACB62540.1| flagellar biosynthetic protein FliP [Burkholderia ambifaria MC40-6]
          Length = 253

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 92/206 (44%), Positives = 142/206 (68%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T  + T+LS  P +L+M+T F R IIV S+LR  +G  + PPN V++ LA+F+TF+VM
Sbjct: 51  VQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQALGTATTPPNQVLVGLAMFLTFFVM 110

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP LDR+   G +P  +  +    A++R   PF  FM   TRE DL+LF  ++ ++    
Sbjct: 111 SPVLDRAYADGYKPFSDGSMPMEQAVRRGVAPFKTFMLKQTRETDLALFAKISKAA---- 166

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +   + +   +L+P+F+ SEL+  F+IGF I +PFLIIDM+VA+++M+MGMMM+ P+++
Sbjct: 167 PMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPSTV 226

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 227 SLPFKLMLFVLVDGWQLLIGSLAQSF 252


>gi|254251034|ref|ZP_04944352.1| Flagellar transport protein FliP [Burkholderia dolosa AUO158]
 gi|124893643|gb|EAY67523.1| Flagellar transport protein FliP [Burkholderia dolosa AUO158]
          Length = 253

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 92/206 (44%), Positives = 142/206 (68%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T  + T+LS  P +L+M+T F R IIV S+LR  +G  + PPN V++ LA+F+TF+VM
Sbjct: 51  VQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQALGTATTPPNQVLVGLAMFLTFFVM 110

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP LD++   G +P  +  +    A+QR   PF  FM   TRE DL+LF  ++ ++    
Sbjct: 111 SPVLDKAYTDGYKPFSDGAMPMEQAVQRGVAPFKSFMLKQTRETDLALFAKISKAA---- 166

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +   + +   +L+P+F+ SEL+  F+IGF I +PFLIIDM+VA+++M+MGMMM+ P+++
Sbjct: 167 PMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPSTV 226

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 227 SLPFKLMLFVLVDGWQLLIGSLAQSF 252


>gi|115350085|ref|YP_771924.1| flagellar biosynthesis protein FliP [Burkholderia ambifaria AMMD]
 gi|115280073|gb|ABI85590.1| flagellar biosynthetic protein FliP [Burkholderia ambifaria AMMD]
          Length = 253

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 92/206 (44%), Positives = 142/206 (68%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T  + T+LS  P +L+M+T F R IIV S+LR  +G  + PPN V++ LA+F+TF+VM
Sbjct: 51  VQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQALGTATTPPNQVLVGLAMFLTFFVM 110

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP LDR+   G +P  +  +    A++R   PF  FM   TRE DL+LF  ++ ++    
Sbjct: 111 SPVLDRAYADGYKPFSDGSMPMEQAVRRGVAPFKTFMLKQTRETDLALFAKISKAA---- 166

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +   + +   +L+P+F+ SEL+  F+IGF I +PFLIIDM+VA+++M+MGMMM+ P+++
Sbjct: 167 PMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPSTV 226

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 227 SLPFKLMLFVLVDGWQLLIGSLAQSF 252


>gi|222053616|ref|YP_002535978.1| flagellar biosynthetic protein FliP [Geobacter sp. FRC-32]
 gi|221562905|gb|ACM18877.1| flagellar biosynthetic protein FliP [Geobacter sp. FRC-32]
          Length = 251

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 96/217 (44%), Positives = 147/217 (67%), Gaps = 9/217 (4%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P D+++   +++ F + T+LS+AP LL+M T F R ++V S LR  +G    P N +II 
Sbjct: 42  PGDVAV---VLQIFFLMTVLSLAPGLLMMTTSFTRIVVVLSFLRNALGTQQAPSNQIIIG 98

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           L+LF+TF++M+P   +     +QP     IT+  A++R   P   FM +  REKDL+LF+
Sbjct: 99  LSLFLTFFIMAPVWQQINVQALQPYRAQTITQDEALKRAVAPVRKFMLSQVREKDLALFI 158

Query: 150 DMAHSSHRNTDITKN-DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
           +++          KN D I    +IP++MISEL+ +F+IGFL+ +PFL++DM+VA+++M+
Sbjct: 159 NLSKLPR-----PKNADDIPTMTIIPAYMISELKTAFQIGFLVYIPFLVLDMVVASVLMS 213

Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MGMMMLPP  ISLPFK++ FVL+DGW L++ +LVKSF
Sbjct: 214 MGMMMLPPVMISLPFKILLFVLVDGWGLIIGSLVKSF 250


>gi|292489152|ref|YP_003532039.1| flagellar biosynthetic protein FliP [Erwinia amylovora CFBP1430]
 gi|292900270|ref|YP_003539639.1| flagellar biosynthetic protein [Erwinia amylovora ATCC 49946]
 gi|291200118|emb|CBJ47244.1| flagellar biosynthetic protein [Erwinia amylovora ATCC 49946]
 gi|291554586|emb|CBA22219.1| Flagellar biosynthetic protein FliP precursor [Erwinia amylovora
           CFBP1430]
          Length = 247

 Score =  192 bits (489), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 92/206 (44%), Positives = 142/206 (68%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T  + + L+  P +L+M+T F R IIV  ++R  +G  + PPN V++ LALF+TFYVM
Sbjct: 44  VQTLVLLSSLTFLPAILLMMTGFTRIIIVLGLMRNALGTPTSPPNQVLVGLALFLTFYVM 103

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP  ++  E   QPL  ++IT   A+++  +P   FM + TRE DL++F  MA +     
Sbjct: 104 SPVFNQIYEQAWQPLQEDKITMEVALEQGVKPLRAFMLDQTRENDLAMFAQMAKAG---- 159

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           +    + +   IL+P+F+ SEL+ +F+IGF I +PFLIID++VA+I+MA+GMMM+PP +I
Sbjct: 160 EFKGPEEVPLGILVPAFVTSELKTAFQIGFTIFIPFLIIDLVVASILMALGMMMVPPATI 219

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           +LPFK++ FVL+DGW LL+ +L +SF
Sbjct: 220 ALPFKLMLFVLVDGWQLLMGSLAQSF 245


>gi|149188095|ref|ZP_01866390.1| flagellar biosynthesis protein P [Vibrio shilonii AK1]
 gi|148838083|gb|EDL55025.1| flagellar biosynthesis protein P [Vibrio shilonii AK1]
          Length = 287

 Score =  192 bits (489), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 97/214 (45%), Positives = 144/214 (67%), Gaps = 8/214 (3%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D SI+  I+    + T+L   P ++I++T F R ++V SILR  MG+   P N VII +A
Sbjct: 80  DYSINLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 136

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           +F+TF++MSP L++  +  IQP +N QIT   A Q+   P   FM   TR KDL  F++M
Sbjct: 137 IFLTFFIMSPVLNQVNDQAIQPYLNEQITAKEAFQQAQGPMKSFMLKQTRVKDLETFVEM 196

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           + S+ +N +      +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+I+MAMGM
Sbjct: 197 SGSTAQNPE-----DVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASILMAMGM 251

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 252 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 285


>gi|260429128|ref|ZP_05783105.1| flagellar biosynthetic protein FliP [Citreicella sp. SE45]
 gi|260419751|gb|EEX13004.1| flagellar biosynthetic protein FliP [Citreicella sp. SE45]
          Length = 242

 Score =  192 bits (489), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 95/219 (43%), Positives = 143/219 (65%), Gaps = 3/219 (1%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
           +N+    S++   ++   + T+LS+AP + IMVTCFP  + V SILR  +G+   PPN++
Sbjct: 26  LNLGEGGSVTAASLQLIALITLLSLAPGIAIMVTCFPFLVTVLSILRQAIGLQQSPPNML 85

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           I+SLALF+T++VM P    +   G+ PL++ QI    A +R  EPF  FM         +
Sbjct: 86  IVSLALFLTYFVMEPVFTEAWTNGVAPLLDEQIEAREAFERTLEPFRGFMATRIDPDTFA 145

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
              D+     R T++     +   +L+PSFM+SE+ R+F++GFLI LPFLIID++VA ++
Sbjct: 146 NIADL-RPDARGTELDPGAPLS--LLVPSFMLSEIARAFQVGFLIFLPFLIIDLVVAAVL 202

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+MGMMM+PP  +SLPFK+ FFV+ DGWSLL  +LV+S+
Sbjct: 203 MSMGMMMVPPAIVSLPFKLAFFVIADGWSLLAGSLVRSY 241


>gi|148380606|ref|YP_001255147.1| flagellar biosynthetic protein FliP [Clostridium botulinum A str.
           ATCC 3502]
 gi|153933100|ref|YP_001384893.1| flagellar biosynthesis protein FliP [Clostridium botulinum A str.
           ATCC 19397]
 gi|153936309|ref|YP_001388362.1| flagellar biosynthesis protein FliP [Clostridium botulinum A str.
           Hall]
 gi|168180927|ref|ZP_02615591.1| flagellar biosynthetic protein FliP [Clostridium botulinum NCTC
           2916]
 gi|168182731|ref|ZP_02617395.1| flagellar biosynthetic protein FliP [Clostridium botulinum Bf]
 gi|226950061|ref|YP_002805152.1| flagellar biosynthetic protein FliP [Clostridium botulinum A2 str.
           Kyoto]
 gi|237796088|ref|YP_002863640.1| flagellar biosynthetic protein FliP [Clostridium botulinum Ba4 str.
           657]
 gi|148290090|emb|CAL84209.1| putative flagellar biosynthetic protein [Clostridium botulinum A
           str. ATCC 3502]
 gi|152929144|gb|ABS34644.1| flagellar biosynthetic protein FliP [Clostridium botulinum A str.
           ATCC 19397]
 gi|152932223|gb|ABS37722.1| flagellar biosynthetic protein FliP [Clostridium botulinum A str.
           Hall]
 gi|182668360|gb|EDT80339.1| flagellar biosynthetic protein FliP [Clostridium botulinum NCTC
           2916]
 gi|182674137|gb|EDT86098.1| flagellar biosynthetic protein FliP [Clostridium botulinum Bf]
 gi|226841463|gb|ACO84129.1| flagellar biosynthetic protein FliP [Clostridium botulinum A2 str.
           Kyoto]
 gi|229260888|gb|ACQ51921.1| flagellar biosynthetic protein FliP [Clostridium botulinum Ba4 str.
           657]
          Length = 258

 Score =  192 bits (489), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 96/199 (48%), Positives = 140/199 (70%), Gaps = 4/199 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T+L++ P  ++M+T F R I+VF  LR  MG    PPN V+I LALF+T ++M P     
Sbjct: 63  TVLTLLPSFIVMMTSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEI 122

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
               IQP M N+IT+  A++  A+P   FM   TR+KDL LF+++A     N  +TK++ 
Sbjct: 123 NTKAIQPYMKNKITQEQAVEIGAKPLRQFMLKQTRQKDLKLFVELAKP---NFKVTKDNA 179

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
             Y I++P+F+ISEL+ +F+IGFL+ +PFLIID++VA+++M+MGM MLPP  ISLPFK++
Sbjct: 180 PLY-IVVPAFIISELKTAFQIGFLLFIPFLIIDLVVASVLMSMGMFMLPPVMISLPFKLL 238

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FV++DGW LLV++LV SF
Sbjct: 239 LFVMVDGWYLLVKSLVMSF 257


>gi|134294170|ref|YP_001117905.1| flagellar biosynthesis protein FliP [Burkholderia vietnamiensis G4]
 gi|134137327|gb|ABO53070.1| flagellar biosynthetic protein FliP [Burkholderia vietnamiensis G4]
          Length = 253

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 96/235 (40%), Positives = 152/235 (64%), Gaps = 7/235 (2%)

Query: 14  PELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
           P L  A+++     N    P   +  +  V+T  + T+LS  P +L+M+T F R IIV S
Sbjct: 22  PALACAQAAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTRIIIVLS 81

Query: 71  ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
           +LR  +G  + PPN V++ LA+F+TF+VMSP LD++   G +P  +  +    A+QR   
Sbjct: 82  LLRQALGTATTPPNQVLLGLAMFLTFFVMSPVLDKAYNDGYKPFSDGSLPMEQAVQRGVA 141

Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
           PF  FM   TRE DL+LF  ++ ++     +   + +   +L+P+F+ SEL+  F+IGF 
Sbjct: 142 PFKGFMLKQTRETDLALFAKISKAA----PMQGPEDVPLSLLVPAFVTSELKTGFQIGFT 197

Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           I +PFLIID++VA+++M+MGMMM+ P+++SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 198 IFIPFLIIDLVVASVLMSMGMMMVSPSTVSLPFKLMLFVLVDGWQLLIGSLAQSF 252


>gi|170755849|ref|YP_001782265.1| flagellar biosynthesis protein FliP [Clostridium botulinum B1 str.
           Okra]
 gi|169121061|gb|ACA44897.1| flagellar biosynthetic protein FliP [Clostridium botulinum B1 str.
           Okra]
          Length = 258

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 96/199 (48%), Positives = 139/199 (69%), Gaps = 4/199 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T+L++ P  ++M+T F R I+VF  LR  MG    PPN V+I LALF+T ++M P     
Sbjct: 63  TVLTLLPSFIVMMTSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEI 122

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
               IQP M N+I +  A++  A+P   FM   TR+KDL LF+D+A     N  +TK++ 
Sbjct: 123 NTKAIQPYMKNKINQEQAVEIGAKPLRQFMLKQTRQKDLKLFVDLAKP---NFKVTKDNA 179

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
             Y I++P+F+ISEL+ +F+IGFL+ +PFLIID++VA+++M+MGM MLPP  ISLPFK++
Sbjct: 180 PLY-IVVPAFIISELKTAFQIGFLLFIPFLIIDLVVASVLMSMGMFMLPPVMISLPFKLL 238

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FV++DGW LLV++LV SF
Sbjct: 239 LFVMVDGWYLLVKSLVMSF 257


>gi|15615005|ref|NP_243308.1| flagellar biosynthesis protein FliP [Bacillus halodurans C-125]
 gi|10175062|dbj|BAB06161.1| flagellar protein required for flagellar formation [Bacillus
           halodurans C-125]
          Length = 233

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 94/194 (48%), Positives = 139/194 (71%), Gaps = 4/194 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +LI++TCF R +IV S +RTG+   ++PPN VII +ALF+TF++M+P      +  +
Sbjct: 43  APSILILMTCFTRVVIVLSFVRTGLATQTMPPNQVIIGIALFITFFIMAPVFAEVNDQAL 102

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
            P ++ +I +  A+ R A P   FM  +TREKDL+LFM   ++ H   +  ++  I    
Sbjct: 103 TPFLDGEIDQQEAMDRAAIPMKEFMAKHTREKDLALFM--GYAGHDRPESIED--IPLTA 158

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           L+P+F ISEL+ +F+IGFLI +PFL+IDMIVA+++M+MGMMMLPP  ISLPFK++ FVL+
Sbjct: 159 LVPAFAISELKTAFQIGFLIFIPFLVIDMIVASVLMSMGMMMLPPIMISLPFKILLFVLV 218

Query: 232 DGWSLLVENLVKSF 245
           DGW L+V++L+ SF
Sbjct: 219 DGWYLVVQSLLLSF 232


>gi|307131599|ref|YP_003883615.1| flagellar biosynthesis protein fliP [Dickeya dadantii 3937]
 gi|306529128|gb|ADM99058.1| Flagellar biosynthesis protein fliP [Dickeya dadantii 3937]
          Length = 258

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 100/248 (40%), Positives = 161/248 (64%), Gaps = 10/248 (4%)

Query: 1   MIRYCFFA-LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLI 57
           ++RY   + L L+ P    A + L  +++ P      +W   ++T    T LS  P +L+
Sbjct: 16  LLRYPAASILLLIAPH---ALAQLPGIISQPLANGGQSWSLPIQTLVFITSLSFIPAVLL 72

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           M+TCF R IIV S+LR  +G  + PPN V++ L+LF+TF+VMSP L+R  +   +P   +
Sbjct: 73  MMTCFTRIIIVLSLLRNALGTPTAPPNQVLLGLSLFLTFFVMSPVLNRIYDEAYRPFSED 132

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
           +I+   AI++ ++P   FM   TRE DL+LF  +A        +   + +  R+L+P+++
Sbjct: 133 KISMEVAIEKGSQPLREFMLRQTREADLALFTRLAQIP----SLQGPEAVPMRVLVPAYV 188

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
            SEL+ +F+IGF I +PFL+ID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL
Sbjct: 189 TSELKTAFQIGFTIFIPFLLIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLL 248

Query: 238 VENLVKSF 245
           + +L +SF
Sbjct: 249 LGSLAQSF 256


>gi|213612735|ref|ZP_03370561.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 206

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 93/206 (45%), Positives = 141/206 (68%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T    T L+  P +L+M+T F R IIVF +LR  +G  S PPN V++ LALF+TF++M
Sbjct: 3   VQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIM 62

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP +D+      QP    +I+   A+ + A+P   FM   TRE DL+LF  +A+S     
Sbjct: 63  SPVIDKIYVDAYQPFSEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSG---- 118

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +   + +  RIL+P+++ SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I
Sbjct: 119 PLQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATI 178

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           +LPFK++ FVL+DGW LLV +L +SF
Sbjct: 179 ALPFKLMLFVLVDGWQLLVGSLAQSF 204


>gi|138894755|ref|YP_001125208.1| flagellar biosynthesis protein FliP [Geobacillus
           thermodenitrificans NG80-2]
 gi|196247623|ref|ZP_03146325.1| flagellar biosynthetic protein FliP [Geobacillus sp. G11MC16]
 gi|134266268|gb|ABO66463.1| Flagellar protein [Geobacillus thermodenitrificans NG80-2]
 gi|196212407|gb|EDY07164.1| flagellar biosynthetic protein FliP [Geobacillus sp. G11MC16]
          Length = 222

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 96/195 (49%), Positives = 139/195 (71%), Gaps = 4/195 (2%)

Query: 51  IAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMG 110
           IAP +LIM+TCF R +IV S +RT +G   +PPN V+I LALF+TF++M+PT     +  
Sbjct: 31  IAPGILIMMTCFTRIVIVLSFVRTSLGTQQMPPNQVLIGLALFLTFFIMAPTWKDINDQA 90

Query: 111 IQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYR 170
           +QPL   +I    A +R A P   FM  +TR++DL+LF+  + +    T    ND I   
Sbjct: 91  LQPLFAEKIDLDEAYERAAIPLKQFMSKHTRQQDLALFLSYSGAEQPKT---VND-IPLT 146

Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230
            L+P+F ISEL+ +F++GF+I +PFL+IDMIVA+++M+MGMMMLPP  ISLPFK++ FVL
Sbjct: 147 ALVPAFAISELKTAFQMGFMIFIPFLVIDMIVASVLMSMGMMMLPPVMISLPFKILLFVL 206

Query: 231 IDGWSLLVENLVKSF 245
           +DGW L+V++L++SF
Sbjct: 207 VDGWYLVVKSLLQSF 221


>gi|157145258|ref|YP_001452577.1| flagellar biosynthesis protein FliP [Citrobacter koseri ATCC
           BAA-895]
 gi|78100273|gb|ABB20928.1| flagellar biosynthesis/transport protein [Citrobacter koseri]
 gi|157082463|gb|ABV12141.1| hypothetical protein CKO_00995 [Citrobacter koseri ATCC BAA-895]
          Length = 245

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 100/247 (40%), Positives = 158/247 (63%), Gaps = 9/247 (3%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           ++     AL+ ++P    A + L  +++ P      +W   V+T    T L+  P +L+M
Sbjct: 4   LLSLTLMALWFISPA---AFAQLPGLVSQPLPGGGQSWSLPVQTLVFITSLTFLPAILLM 60

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +
Sbjct: 61  MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAWQPFSEEK 120

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   A+++ A+P   FM   TRE DL LF  +A+S      +   + +  RIL+P+++ 
Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLGLFARLANSG----PLQGPEAVPMRILLPAYVT 176

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV
Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 237 GSLAQSF 243


>gi|292487982|ref|YP_003530859.1| flagellar biosynthetic protein FliP [Erwinia amylovora CFBP1430]
 gi|292899202|ref|YP_003538571.1| flagellar biosynthetic protein [Erwinia amylovora ATCC 49946]
 gi|291199050|emb|CBJ46161.1| flagellar biosynthetic protein [Erwinia amylovora ATCC 49946]
 gi|291553406|emb|CBA20451.1| Flagellar biosynthetic protein FliP precursor [Erwinia amylovora
           CFBP1430]
          Length = 245

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 100/240 (41%), Positives = 157/240 (65%), Gaps = 9/240 (3%)

Query: 8   ALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRF 65
           ALF++ P  V+A+  L  +++ P      +W   V+T    T L+  P +L+++T F R 
Sbjct: 11  ALFMLAPN-VYAQ--LPGLISQPTANGGQSWSLPVQTLVFITSLTFLPAILLLMTSFTRI 67

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
           IIVF +LR  +G  S PPN V++ L+LF+TF++M P  D+      QP   ++I+   AI
Sbjct: 68  IIVFGLLRNALGTPSAPPNQVLLGLSLFLTFFIMGPVFDKIYTDAYQPFSEDKISMQEAI 127

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
            + A+P   FM   TRE DL+LF  +A++      I   + +  RIL+P+++ SEL+ +F
Sbjct: 128 DKGAQPLREFMLRQTREADLALFARLANTP----PIAGPEAVPMRILLPAYVTSELKTAF 183

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +IGF + +PFLIID++VA+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 184 QIGFTVFIPFLIIDLVVASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVSSLAQSF 243


>gi|170722844|ref|YP_001750532.1| flagellar biosynthesis protein FliP [Pseudomonas putida W619]
 gi|169760847|gb|ACA74163.1| flagellar biosynthetic protein FliP [Pseudomonas putida W619]
          Length = 255

 Score =  192 bits (488), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 95/201 (47%), Positives = 134/201 (66%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           I T LS  P  +I++T F R IIVFSILR  +G+   P N V+  +ALF+T ++M+P  D
Sbjct: 56  IMTALSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQVLTGMALFLTMFIMAPVFD 115

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           R  +  +QP +  Q+T   AI +   P   FM   TR+ DL LFM ++    + TDI   
Sbjct: 116 RVNQDALQPYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDLDLFMRLS----KRTDIAGP 171

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D +   IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA+++MAMGMMML P  ISLPFK
Sbjct: 172 DQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFK 231

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW+L++  L  SF
Sbjct: 232 IMLFVLVDGWALIMGTLAGSF 252


>gi|91211166|ref|YP_541152.1| flagellar biosynthesis protein FliP [Escherichia coli UTI89]
 gi|117624088|ref|YP_853001.1| flagellar biosynthesis protein FliP [Escherichia coli APEC O1]
 gi|218558805|ref|YP_002391718.1| flagellar biosynthesis protein FliP [Escherichia coli S88]
 gi|91072740|gb|ABE07621.1| flagellar assembly protein FliP [Escherichia coli UTI89]
 gi|115513212|gb|ABJ01287.1| flagellar assembly protein FliP [Escherichia coli APEC O1]
 gi|218365574|emb|CAR03301.1| flagellar biosynthesis protein [Escherichia coli S88]
 gi|294490075|gb|ADE88831.1| flagellar biosynthetic protein FliP [Escherichia coli IHE3034]
 gi|307626576|gb|ADN70880.1| flagellar biosynthesis protein FliP [Escherichia coli UM146]
 gi|323952441|gb|EGB48314.1| flagellar biosynthetic protein FliP [Escherichia coli H252]
          Length = 245

 Score =  192 bits (488), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 102/239 (42%), Positives = 156/239 (65%), Gaps = 9/239 (3%)

Query: 9   LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66
           L+LVTP L FA+  L  + + P      +W   V+T    T L+  P +L+M+T F R I
Sbjct: 12  LWLVTP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +I+   A++
Sbjct: 69  IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFNEEKISMQEALE 128

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           +  +P   FM   TRE DL LF  +A++      +   + +  RIL+P+++ SEL+ +F+
Sbjct: 129 KGEQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQ 184

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243


>gi|283832657|ref|ZP_06352398.1| flagellar biosynthetic protein FliP [Citrobacter youngae ATCC
           29220]
 gi|291072331|gb|EFE10440.1| flagellar biosynthetic protein FliP [Citrobacter youngae ATCC
           29220]
          Length = 245

 Score =  192 bits (488), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 97/229 (42%), Positives = 151/229 (65%), Gaps = 6/229 (2%)

Query: 19  AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
           A + L  +++ P      +W   V+T    T L+  P +L+M+T F R IIVF +LR  +
Sbjct: 19  ALAQLPGLVSQPLPGGGQSWSLPVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNAL 78

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G  S PPN V++ LALF+TF++MSP +D+      QP    +I+   A+++ A+P   FM
Sbjct: 79  GTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEAMEKGAQPLREFM 138

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
              TRE DL+LF  +A+S      +   + +  RIL+P+++ SEL+ +F+IGF I +PFL
Sbjct: 139 LRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFL 194

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 195 IIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243


>gi|332756104|gb|EGJ86457.1| flagellar biosynthetic protein FliP [Shigella flexneri 4343-70]
 gi|333003359|gb|EGK22905.1| flagellar biosynthetic protein FliP [Shigella flexneri K-218]
          Length = 245

 Score =  192 bits (488), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 101/239 (42%), Positives = 157/239 (65%), Gaps = 9/239 (3%)

Query: 9   LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66
           L+L+TP L FA+  L  + + P      +W   V+T    T L+  P +L+M+T F R I
Sbjct: 12  LWLITP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IVF +LR  +G  S PPN V++ LALF+TF++MSP +++      QP    +I+   A++
Sbjct: 69  IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVINKIYVDAYQPFSEEKISMQEALE 128

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           + A+P   FM   TRE DL LF  +A++      +   + +  RIL+P+++ SEL+ +F+
Sbjct: 129 KGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQ 184

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243


>gi|162210056|ref|YP_331659.2| flagellar biosynthesis protein FliP [Burkholderia pseudomallei
           1710b]
          Length = 253

 Score =  192 bits (488), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 93/206 (45%), Positives = 138/206 (66%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T  + T+LS  P +L+M+T F R IIV S+LR  +G  S PPN V++ LALF+T +VM
Sbjct: 51  VQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQAIGTASTPPNQVLVGLALFLTLFVM 110

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP LDR+     +P     +    A+QR   PF  FM   TRE DL+LF  ++ ++    
Sbjct: 111 SPVLDRAYNDAYKPFSEGTLQMDQAVQRGTAPFKAFMLKQTRETDLALFAKISKAAP--- 167

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +   + +   +L+P+F+ SEL+  F+IGF I +PFLIIDM+VA+++M+MGMMM+ P ++
Sbjct: 168 -MQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATV 226

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 227 SLPFKLMLFVLVDGWQLLIGSLAQSF 252


>gi|292493587|ref|YP_003529026.1| flagellar biosynthetic protein FliP [Nitrosococcus halophilus Nc4]
 gi|291582182|gb|ADE16639.1| flagellar biosynthetic protein FliP [Nitrosococcus halophilus Nc4]
          Length = 269

 Score =  192 bits (488), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 92/209 (44%), Positives = 141/209 (67%), Gaps = 4/209 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           T  ++  G+ T L++ P  ++M+T F R I+V SILR  +G+   P + ++I L LF+TF
Sbjct: 61  TVTLQILGLMTALTLLPAAVMMMTSFTRIIVVLSILRQALGLAQTPSSQILIGLTLFLTF 120

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           ++M P LD++ + G++P +  +I+ T A+ R  EPF  FM   TRE DL LF ++A    
Sbjct: 121 FIMGPVLDKAYQEGVRPYLQEEISVTEALVRTREPFRHFMMAQTRETDLQLFAEIAGQKA 180

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
             +       + + +L+P+F+ SEL+ +F+IGFL+ +PFLIID++VA+++MAMGMMML P
Sbjct: 181 FESP----AQVPFSLLVPAFITSELKTAFQIGFLLFIPFLIIDLVVASVLMAMGMMMLSP 236

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             +SLPFK++ FVLIDGWSLL+  L  SF
Sbjct: 237 MLVSLPFKLLLFVLIDGWSLLMGTLASSF 265


>gi|304398865|ref|ZP_07380735.1| flagellar biosynthetic protein FliP [Pantoea sp. aB]
 gi|308187300|ref|YP_003931431.1| Flagellar biosynthetic protein fliP [Pantoea vagans C9-1]
 gi|304353569|gb|EFM17946.1| flagellar biosynthetic protein FliP [Pantoea sp. aB]
 gi|308057810|gb|ADO09982.1| Flagellar biosynthetic protein fliP [Pantoea vagans C9-1]
          Length = 244

 Score =  192 bits (488), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 93/206 (45%), Positives = 143/206 (69%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T    T L+  P +L+M+T F R IIVF +LR  +G  S PPN V++ L+LF+TF++M
Sbjct: 41  VQTLVFITALTFIPAVLLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLSLFLTFFIM 100

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +PT D+  +    P   ++I+   AI + A+P   FM   TRE DL+LF  +A+++    
Sbjct: 101 APTFDKIYQDAYLPFSQDKISMDVAIDKGAQPLREFMLRQTREADLALFARLANTA---- 156

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            I   + +  RIL+P+++ SEL+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP SI
Sbjct: 157 PIAGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASI 216

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           +LPFK++ FVL+DGW LLV +L +SF
Sbjct: 217 ALPFKLMLFVLVDGWQLLVGSLAQSF 242


>gi|212709502|ref|ZP_03317630.1| hypothetical protein PROVALCAL_00544 [Providencia alcalifaciens DSM
           30120]
 gi|212687840|gb|EEB47368.1| hypothetical protein PROVALCAL_00544 [Providencia alcalifaciens DSM
           30120]
          Length = 247

 Score =  192 bits (488), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 92/193 (47%), Positives = 134/193 (69%), Gaps = 4/193 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +L+M+T F R IIV  +LR  +G  S PPN V++ LALF+TF+VMSP  D+      Q
Sbjct: 57  PAMLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFVMSPVADQVYREAYQ 116

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P   ++I+  TA+++   P   FM   TRE DL+LF  +A    +  DI +   +  RIL
Sbjct: 117 PFSEDKISLETALEKGTAPLRTFMLGQTRESDLALFARIA----KVGDIQEAKDVPMRIL 172

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           IP+F+ SEL+ +F+IGF I +PFLIID++VA+++MA+GMMM+PP ++SLPFK++ FVL+D
Sbjct: 173 IPAFITSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVD 232

Query: 233 GWSLLVENLVKSF 245
           GW LL+ +L +SF
Sbjct: 233 GWQLLLGSLSQSF 245


>gi|331683500|ref|ZP_08384101.1| flagellar biosynthetic protein FliP [Escherichia coli H299]
 gi|331079715|gb|EGI50912.1| flagellar biosynthetic protein FliP [Escherichia coli H299]
          Length = 245

 Score =  192 bits (487), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 101/239 (42%), Positives = 156/239 (65%), Gaps = 9/239 (3%)

Query: 9   LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66
           L+L+TP L FA+  L  + + P      +W   V+T    T L+  P +L+M+T F R I
Sbjct: 12  LWLITP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +I+   A++
Sbjct: 69  IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           +  +P   FM   TRE DL LF  +A++      +   + +  RIL+P+++ SEL+ +F+
Sbjct: 129 KGVQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQ 184

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243


>gi|212639551|ref|YP_002316071.1| flagellar biosynthesis protein FliP [Anoxybacillus flavithermus
           WK1]
 gi|212561031|gb|ACJ34086.1| Flagellar biosynthesis pathway, component FliP [Anoxybacillus
           flavithermus WK1]
          Length = 221

 Score =  192 bits (487), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 94/195 (48%), Positives = 136/195 (69%), Gaps = 4/195 (2%)

Query: 51  IAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMG 110
           IAP +LIMVT F R +IV S +RT +G   +PPN V+I L+LF+TF++M+PT  +     
Sbjct: 31  IAPGILIMVTSFTRIVIVLSFVRTALGTQQMPPNQVMIGLSLFLTFFIMAPTFQQINRDA 90

Query: 111 IQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYR 170
           +QPL + +I    A +R   P   FM  +TR+KDL+LF+  A +    T       I   
Sbjct: 91  LQPLFDEKINLEQAYERAEAPLKEFMSKHTRQKDLALFLSYAGAEQPKT----VQDIPMS 146

Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230
            L+P+F ISEL+ +F+IGF++ +PFL+IDMIVA+++M+MGMMMLPP  ISLPFK++ FVL
Sbjct: 147 ALVPAFAISELKTAFQIGFMLFIPFLVIDMIVASVLMSMGMMMLPPVMISLPFKILLFVL 206

Query: 231 IDGWSLLVENLVKSF 245
           +DGW L+V++L++SF
Sbjct: 207 VDGWYLVVKSLLESF 221


>gi|308173598|ref|YP_003920303.1| flagellar export protein [Bacillus amyloliquefaciens DSM 7]
 gi|307606462|emb|CBI42833.1| component of the flagellar export machinery [Bacillus
           amyloliquefaciens DSM 7]
 gi|328553470|gb|AEB23962.1| flagellar biosynthesis protein FliP [Bacillus amyloliquefaciens
           TA208]
 gi|328911739|gb|AEB63335.1| component of the flagellar export machinery [Bacillus
           amyloliquefaciens LL3]
          Length = 221

 Score =  192 bits (487), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 92/206 (44%), Positives = 144/206 (69%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+   + T+ S+AP +LI++TCF R +IV S +RT +   ++PPN V+I LALF+TF++M
Sbjct: 20  VKLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATQNMPPNQVLIGLALFLTFFIM 79

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +PT     +  + PLM+N+I+   A  +  +P   +M  +TR+KDL+LFM+ A      +
Sbjct: 80  APTFSEINKDALTPLMDNKISLDEAYTKAEKPIKEYMSKHTRQKDLALFMNYAKMKKPES 139

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                  I    ++P++ ISEL+ +F++GF+I +PFLIIDM+VA+++M+MGMMMLPP  I
Sbjct: 140 I----QDIPLTTMVPAYAISELKTAFQMGFMIFIPFLIIDMVVASVLMSMGMMMLPPVMI 195

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW L+V++L+ SF
Sbjct: 196 SLPFKILLFVLVDGWYLIVKSLLDSF 221


>gi|167813515|ref|ZP_02445195.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei 91]
 gi|167822057|ref|ZP_02453528.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei 9]
 gi|167843670|ref|ZP_02469178.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei
           B7210]
 gi|167892141|ref|ZP_02479543.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei
           7894]
 gi|167900653|ref|ZP_02487858.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei NCTC
           13177]
 gi|167908873|ref|ZP_02495964.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei 112]
 gi|167916912|ref|ZP_02504003.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei
           BCC215]
          Length = 253

 Score =  192 bits (487), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 93/206 (45%), Positives = 138/206 (66%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T  + T+LS  P +L+M+T F R IIV S+LR  +G  S PPN V++ LALF+T +VM
Sbjct: 51  VQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQAIGTASTPPNQVLVGLALFLTLFVM 110

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP LDR+     +P     +    A+QR   PF  FM   TRE DL+LF  ++ ++    
Sbjct: 111 SPVLDRAYNDAYKPFSEGTLQMDQAVQRGTAPFKAFMLKQTRETDLALFAKISKAAP--- 167

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +   + +   +L+P+F+ SEL+  F+IGF I +PFLIIDM+VA+++M+MGMMM+ P ++
Sbjct: 168 -MQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATV 226

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 227 SLPFKLMLFVLVDGWQLLIGSLAQSF 252


>gi|295678047|ref|YP_003606571.1| flagellar biosynthetic protein FliP [Burkholderia sp. CCGE1002]
 gi|295437890|gb|ADG17060.1| flagellar biosynthetic protein FliP [Burkholderia sp. CCGE1002]
          Length = 269

 Score =  192 bits (487), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 93/207 (44%), Positives = 140/207 (67%), Gaps = 4/207 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T  + T+LS  P +++M+T F R +IV S+LR  +G  + PPN V++ LALF+TF+VM
Sbjct: 67  VQTMLLLTMLSFLPAMVLMMTSFTRIVIVLSLLRQALGTTTTPPNQVLVGLALFLTFFVM 126

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP LD++   G +P     +    A+ R   PF  FM   TRE DL+LF  ++H++    
Sbjct: 127 SPVLDKAYNEGYKPFSEGTLPMDQAVSRGVAPFKTFMLRQTRESDLALFARISHAA---- 182

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +   + +   +L+PSF+ SEL+  F IGF I +PFLIIDM+VA+++M+MGMMM+ P +I
Sbjct: 183 PMQGPEDVPLSLLVPSFVTSELKTGFTIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATI 242

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
           SLPFK++ FVL+DGW LL+ +L +SF+
Sbjct: 243 SLPFKLMLFVLVDGWQLLLGSLAQSFV 269


>gi|168186132|ref|ZP_02620767.1| flagellar biosynthetic protein FliP [Clostridium botulinum C str.
           Eklund]
 gi|169295707|gb|EDS77840.1| flagellar biosynthetic protein FliP [Clostridium botulinum C str.
           Eklund]
          Length = 257

 Score =  192 bits (487), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 93/221 (42%), Positives = 151/221 (68%), Gaps = 6/221 (2%)

Query: 25  DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
           D  N P D   +   ++   + T++S+ P  L+M+T F R I+V   +R+ +G    PPN
Sbjct: 41  DQANSPKDYVDN---IKLLVMLTVISLLPSFLVMMTSFTRIIVVLGFMRSALGTQQAPPN 97

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
            +++ +ALF+T ++M+PT     +  I+P + N+IT+T A+   ++P   FM   TR+KD
Sbjct: 98  QILVGIALFLTIFIMAPTYKTINKEAIKPFLENKITQTEALNNASKPMREFMLKQTRDKD 157

Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
           L LF+D++ +    T ITK +++   ++IPSF+ISEL+ +F+IGFL+ +PFLIID++VA+
Sbjct: 158 LELFLDISKTDK--TKITK-ENVPMYVVIPSFIISELKTAFKIGFLLFIPFLIIDIVVAS 214

Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++M+MGM MLPP  ISLPFK++ FV++DGW LLV++LV  +
Sbjct: 215 VLMSMGMFMLPPVMISLPFKLLLFVMVDGWYLLVKSLVMGY 255


>gi|85060034|ref|YP_455736.1| flagellar biosynthesis protein FliP [Sodalis glossinidius str.
           'morsitans']
 gi|84780554|dbj|BAE75331.1| flagellar biosynthesis protein FliP [Sodalis glossinidius str.
           'morsitans']
          Length = 253

 Score =  192 bits (487), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 103/240 (42%), Positives = 153/240 (63%), Gaps = 8/240 (3%)

Query: 8   ALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRF 65
           AL L+     FA+  L  +++ P       W   V+T    T L+  P  L+M+T F R 
Sbjct: 18  ALMLLFAPACFAQ--LPSIISQPLPGGSQNWSLPVQTLVFLTSLTFIPAALLMMTSFTRI 75

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
           IIV  +LR+ +G  S PPN V++ LALF+TF+VMSP LD        PL  N+I+  TA+
Sbjct: 76  IIVLGLLRSAIGTPSAPPNQVLLGLALFLTFFVMSPVLDSIYTEAYLPLSENKISMQTAL 135

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
           +R ++P   FM   TRE DL LF  +A+       +   + +  RIL+P+++ SEL+ +F
Sbjct: 136 ERGSQPLRAFMLRQTREADLGLFARLANVP----PLEGPEAVPMRILLPAYVTSELKTAF 191

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +IGF + +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 192 QIGFTLFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLSSLAQSF 251


>gi|167717397|ref|ZP_02400633.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei
           DM98]
          Length = 244

 Score =  192 bits (487), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 93/206 (45%), Positives = 138/206 (66%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T  + T+LS  P +L+M+T F R IIV S+LR  +G  S PPN V++ LALF+T +VM
Sbjct: 42  VQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQAIGTASTPPNQVLVGLALFLTLFVM 101

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP LDR+     +P     +    A+QR   PF  FM   TRE DL+LF  ++ ++    
Sbjct: 102 SPVLDRAYNDAYKPFSEGTLQMDQAVQRGTAPFKAFMLKQTRETDLALFAKISKAAP--- 158

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +   + +   +L+P+F+ SEL+  F+IGF I +PFLIIDM+VA+++M+MGMMM+ P ++
Sbjct: 159 -MQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATV 217

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 218 SLPFKLMLFVLVDGWQLLIGSLAQSF 243


>gi|237731996|ref|ZP_04562477.1| flagellar biosynthesis protein FliP [Citrobacter sp. 30_2]
 gi|226907535|gb|EEH93453.1| flagellar biosynthesis protein FliP [Citrobacter sp. 30_2]
          Length = 245

 Score =  192 bits (487), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 97/229 (42%), Positives = 150/229 (65%), Gaps = 6/229 (2%)

Query: 19  AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
           A + L  +++ P       W   V+T    T L+  P +L+M+T F R IIVF +LR  +
Sbjct: 19  ALAQLPGLVSQPLPGGGQNWTLPVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNAL 78

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G  S PPN V++ LALF+TF++MSP +D+      QP    +I+   A+++ A+P   FM
Sbjct: 79  GTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEAMEKGAQPLREFM 138

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
              TRE DL+LF  +A+S      +   + +  RIL+P+++ SEL+ +F+IGF I +PFL
Sbjct: 139 LRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFL 194

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 195 IIDLVIASVLMALGMMMVPPATIALPFKMMLFVLVDGWQLLVGSLAQSF 243


>gi|37525861|ref|NP_929205.1| flagellar biosynthesis protein FliP [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36785290|emb|CAE14231.1| flagellar biosynthetic protein FliP [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 244

 Score =  192 bits (487), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 98/229 (42%), Positives = 147/229 (64%), Gaps = 6/229 (2%)

Query: 19  AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
           A + L  +++ P      +W   V+T    T L+  P  L+M+T F R IIV  +LR  +
Sbjct: 18  AAAQLPGIISQPLANGGQSWSLPVQTLVFITALTFIPAALLMMTSFTRIIIVLGLLRNAL 77

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G  S PPN V++ LALFMTF++MSP  D+  +    P   ++I+  TA++  A+P   FM
Sbjct: 78  GTPSAPPNQVLLGLALFMTFFIMSPVFDKVYQDAYLPFSEDKISLETALENGAKPLRQFM 137

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
              TRE DL+LF  +A      T     D +  R+L+P+F+ SEL+ +F+IGF + +PFL
Sbjct: 138 LRQTRENDLALFARLADQPPFET----ADSVPMRVLMPAFITSELKTAFQIGFTLFIPFL 193

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 194 IIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 242


>gi|187778762|ref|ZP_02995235.1| hypothetical protein CLOSPO_02357 [Clostridium sporogenes ATCC
           15579]
 gi|187772387|gb|EDU36189.1| hypothetical protein CLOSPO_02357 [Clostridium sporogenes ATCC
           15579]
          Length = 258

 Score =  192 bits (487), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 94/199 (47%), Positives = 137/199 (68%), Gaps = 4/199 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T+L++ P  ++M+T F R I+VF  LR  MG    PPN V+I LALF+T ++M P     
Sbjct: 63  TVLTLLPSFIVMMTSFVRTIVVFGFLRNAMGTQQSPPNQVMIGLALFLTLFIMRPVYTEI 122

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
               IQP M N+IT+  A++  A+P   FM   TR+KDL LF+D+   + + T     D+
Sbjct: 123 NTKAIQPYMKNKITQEQAVEIGAKPLRQFMLKQTRQKDLKLFVDLGKPNFKVTK----DN 178

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
               I++P+F+ISEL+ +F+IGFL+ +PFLIID++VA+++M+MGM MLPP  ISLPFK++
Sbjct: 179 APLDIVVPAFIISELKTAFQIGFLLFIPFLIIDLVVASVLMSMGMFMLPPVMISLPFKLL 238

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FV++DGW LLV++LV SF
Sbjct: 239 LFVMVDGWYLLVKSLVMSF 257


>gi|254258156|ref|ZP_04949210.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
           1710a]
 gi|254298637|ref|ZP_04966088.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
           406e]
 gi|76580117|gb|ABA49592.1| flagellar biosynthetic protein [Burkholderia pseudomallei 1710b]
 gi|157808588|gb|EDO85758.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
           406e]
 gi|254216845|gb|EET06229.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
           1710a]
          Length = 276

 Score =  192 bits (487), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 93/206 (45%), Positives = 138/206 (66%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T  + T+LS  P +L+M+T F R IIV S+LR  +G  S PPN V++ LALF+T +VM
Sbjct: 74  VQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQAIGTASTPPNQVLVGLALFLTLFVM 133

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP LDR+     +P     +    A+QR   PF  FM   TRE DL+LF  ++ ++    
Sbjct: 134 SPVLDRAYNDAYKPFSEGTLQMDQAVQRGTAPFKAFMLKQTRETDLALFAKISKAAP--- 190

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +   + +   +L+P+F+ SEL+  F+IGF I +PFLIIDM+VA+++M+MGMMM+ P ++
Sbjct: 191 -MQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATV 249

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 250 SLPFKLMLFVLVDGWQLLIGSLAQSF 275


>gi|332524236|ref|ZP_08400462.1| flagellar biosynthesis protein FliP [Rubrivivax benzoatilyticus
           JA2]
 gi|332107571|gb|EGJ08795.1| flagellar biosynthesis protein FliP [Rubrivivax benzoatilyticus
           JA2]
          Length = 252

 Score =  192 bits (487), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 94/207 (45%), Positives = 139/207 (67%), Gaps = 4/207 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++T   FT LS  P LL+++T F R +IV S+LR  +G  + PPN VII ++LF+TF+VM
Sbjct: 49  IQTLLFFTALSFIPALLLLMTGFTRIVIVLSLLRQALGTQAAPPNQVIIGMSLFLTFFVM 108

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SPT DR  +   +P   NQI    A++R   P   FM   TR+ D+ LF  +A       
Sbjct: 109 SPTFDRVYDQAYKPFAENQIAFDEALKRGEVPMREFMLKQTRQSDVQLFAKLAKLPAE-- 166

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
              K++ +  R+L+P+F+ SEL+ +F+IGF+I +PFLIIDMIVA+++M++GMMML P  +
Sbjct: 167 --VKSEDVPLRVLVPAFVTSELKSAFQIGFMIFIPFLIIDMIVASVLMSLGMMMLSPVLV 224

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +LPFK++ FVL DGW+LL+ +L  SF+
Sbjct: 225 ALPFKLMLFVLADGWNLLLGSLAASFV 251


>gi|157164339|ref|YP_001466589.1| flagellar biosynthesis protein FliP [Campylobacter concisus 13826]
 gi|112800704|gb|EAT98048.1| flagellar biosynthetic protein FliP [Campylobacter concisus 13826]
          Length = 243

 Score =  192 bits (487), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 101/194 (52%), Positives = 134/194 (69%), Gaps = 6/194 (3%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P L+ M+T F R +IVFS LR  MG   VPP+ V+ISLA+ +TF++M P   RS + GI+
Sbjct: 54  PSLIFMMTSFLRLVIVFSFLRQAMGTQQVPPSTVLISLAMVLTFFIMEPVGQRSYDEGIK 113

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYRI 171
           P +  QI     + +  +PF  FM  NTREKDL+LF  +     RN     N + I   I
Sbjct: 114 PYIAEQIGYEEMLDKSLKPFKEFMVKNTREKDLALFFRI-----RNLQNPANIEDIPLSI 168

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
            + +FMISEL+ SFEI FL+ LPFL+IDM+V++++MAMGMMMLPP  ISLPFK++ FVL+
Sbjct: 169 AMSAFMISELKTSFEIAFLLYLPFLVIDMVVSSVLMAMGMMMLPPVMISLPFKLLIFVLV 228

Query: 232 DGWSLLVENLVKSF 245
           DGW+LL+ NLVKSF
Sbjct: 229 DGWNLLIGNLVKSF 242


>gi|305674368|ref|YP_003866040.1| flagellar export machinery protein [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|305412612|gb|ADM37731.1| component of the flagellar export machinery [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 221

 Score =  192 bits (487), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 94/206 (45%), Positives = 142/206 (68%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+   + T+ S+AP +LI++TCF R +IV S +RT +   S+PPN V+I LALF+TF++M
Sbjct: 20  VKLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATQSMPPNQVLIGLALFLTFFIM 79

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +PT     +  + PLM+N+I+   A  +  EP   FM  +TR+KDL+LFM+ A      +
Sbjct: 80  APTFSEINKEALTPLMDNKISLDEAYSKAEEPIKEFMSKHTRQKDLALFMNYAKMDKPES 139

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                  I    ++P+F    L+ +F+IGF+I +PFLIIDM+VA+++M+MGMMMLPP  I
Sbjct: 140 ----LKDIPLTTMVPAFATPILKTAFQIGFMIFIPFLIIDMVVASVLMSMGMMMLPPVMI 195

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW L+V++L++SF
Sbjct: 196 SLPFKILLFVLVDGWYLIVKSLLQSF 221


>gi|300717241|ref|YP_003742044.1| flagellar biosynthesis protein [Erwinia billingiae Eb661]
 gi|299063077|emb|CAX60197.1| Flagellar biosynthesis protein [Erwinia billingiae Eb661]
          Length = 244

 Score =  191 bits (486), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 97/227 (42%), Positives = 149/227 (65%), Gaps = 6/227 (2%)

Query: 21  SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           + L  +M+ P      +W   V+T    T L+  P +L+M+T F R IIVF +LR  +G 
Sbjct: 20  AQLPGLMSHPTANGGQSWSLPVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGT 79

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
            S PPN V++ LALF+TF++M P  D+  +    P   ++I+   AI + A+P   FM  
Sbjct: 80  PSAPPNQVLLGLALFLTFFIMGPVFDKIYQDAYLPFSQDKISMQDAIDKGAQPLREFMLR 139

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
            TRE DL+LF  +++S      +   + +  RIL+P+++ SEL+ +F+IGF + +PFLII
Sbjct: 140 QTREADLALFARLSNSP----PLQGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLII 195

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           D++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGWSLLV +L +SF
Sbjct: 196 DLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWSLLVSSLAQSF 242


>gi|310764878|gb|ADP09828.1| Flagellar biosynthetic protein FliP [Erwinia sp. Ejp617]
          Length = 247

 Score =  191 bits (486), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 91/206 (44%), Positives = 142/206 (68%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T  + + L+  P +L+M+T F R IIV  ++R  +G  + PPN V++ LALF+TFYVM
Sbjct: 44  VQTLVLLSSLTFLPAVLLMMTGFTRIIIVLGLMRNALGTPTAPPNQVLVGLALFLTFYVM 103

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP  ++  E   QPL  ++IT   A+++  +P   FM + TRE DL++F  +A +     
Sbjct: 104 SPVFNQIYEQAWQPLQEDKITMEVALEQGVKPLRAFMLDQTRENDLAMFAQIAKAG---- 159

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           +    + +   IL+P+F+ SEL+ +F+IGF I +PFLIID++VA+I+MA+GMMM+PP +I
Sbjct: 160 EFKGPEEVPLGILVPAFVTSELKTAFQIGFTIFIPFLIIDLVVASILMALGMMMVPPATI 219

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           +LPFK++ FVL+DGW LL+ +L +SF
Sbjct: 220 ALPFKLMLFVLVDGWQLLMGSLAQSF 245


>gi|253996309|ref|YP_003048373.1| flagellar biosynthetic protein FliP [Methylotenera mobilis JLW8]
 gi|253982988|gb|ACT47846.1| flagellar biosynthetic protein FliP [Methylotenera mobilis JLW8]
          Length = 251

 Score =  191 bits (486), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 96/209 (45%), Positives = 142/209 (67%), Gaps = 4/209 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           T  ++T  + T L+  P +++M+T F R IIV S+LR  +G  SVPPN V+I LALF+TF
Sbjct: 46  TLSLQTLILLTSLTFLPAIVLMMTGFTRIIIVLSLLRQALGTQSVPPNQVMIGLALFLTF 105

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           +VMSP +D+      +PL  NQI+   A+ +   P   FM   TRE DL+LF+ MA    
Sbjct: 106 FVMSPVIDKIYVDAYKPLSENQISMQEAMDKGVAPLKEFMLKQTREGDLALFVKMAEVEK 165

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
               I   D +  ++L+P+F+ SEL+ +F+IGF I +PFLIIDM+VA+++M+MGMMM+ P
Sbjct: 166 ----IESPDQVPLKVLVPAFVTSELKTAFQIGFAIFIPFLIIDMVVASVLMSMGMMMVSP 221

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             ++LPFK++ FVL+DGW L++ +LV+SF
Sbjct: 222 AIVALPFKLMLFVLVDGWQLILGSLVESF 250


>gi|167034912|ref|YP_001670143.1| flagellar biosynthesis protein FliP [Pseudomonas putida GB-1]
 gi|166861400|gb|ABY99807.1| flagellar biosynthetic protein FliP [Pseudomonas putida GB-1]
          Length = 251

 Score =  191 bits (486), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 94/201 (46%), Positives = 134/201 (66%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           I T LS  P  +I++T F R IIVFSILR  +G+   P N ++  +ALF+T ++M+P  D
Sbjct: 52  IMTALSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQLLTGMALFLTMFIMAPVFD 111

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           R  +  +QP +  Q+T   AI +   P   FM   TR+ DL LFM ++    + TDI   
Sbjct: 112 RVNQDALQPYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDLDLFMRLS----KRTDIAGP 167

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D +   IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA+++MAMGMMML P  ISLPFK
Sbjct: 168 DQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFK 227

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW+L++  L  SF
Sbjct: 228 IMLFVLVDGWALIMGTLASSF 248


>gi|33592492|ref|NP_880136.1| flagellar biosynthesis protein FliP [Bordetella pertussis Tohama I]
 gi|33572138|emb|CAE41681.1| flagellar biosynthetic protein FliP [Bordetella pertussis Tohama I]
 gi|332381910|gb|AEE66757.1| flagellar biosynthesis protein FliP [Bordetella pertussis CS]
          Length = 244

 Score =  191 bits (486), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 101/234 (43%), Positives = 146/234 (62%), Gaps = 6/234 (2%)

Query: 14  PELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
           P    A+++L  +   P      T+ +  +T  + T LS  P  L+M+T F R IIV  +
Sbjct: 13  PSGALAQATLPALTATPGPNGSETYSLSMQTLLLMTSLSFLPAALLMMTGFTRIIIVLGL 72

Query: 72  LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
           LR+ MG    PPN V+I LALF+TFY MSP  D+      QPL    I   TA++R   P
Sbjct: 73  LRSAMGTAMSPPNHVLIGLALFLTFYTMSPVFDKIYTDAYQPLAAGSIPFETAVERAGAP 132

Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
              FM + TRE DL+LF ++A+       +     +  RILIP+F+ SEL+ +F+IGF I
Sbjct: 133 LHNFMLHQTRENDLTLFANLANLP----AMEDPSQVPMRILIPAFITSELKTAFQIGFTI 188

Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            +PFLIID++VA+++MA+GMMM+PP +++LPFK++ FVL DGW LL+ +L +SF
Sbjct: 189 FIPFLIIDLVVASVLMALGMMMVPPVTVALPFKLMLFVLADGWHLLLGSLAQSF 242


>gi|332343674|gb|AEE57008.1| flagellar biosynthetic protein FliP [Escherichia coli UMNK88]
          Length = 245

 Score =  191 bits (486), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 101/239 (42%), Positives = 156/239 (65%), Gaps = 9/239 (3%)

Query: 9   LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66
           L+L+TP L FA+  L  + + P      +W   V+T    T L+  P +L+M+T F R I
Sbjct: 12  LWLITP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +I+   A++
Sbjct: 69  IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           + A+P   FM    RE DL LF  +A++      +   + +  RIL+P+++ SEL+ +F+
Sbjct: 129 KGAQPLREFMLRQIREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQ 184

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243


>gi|126442020|ref|YP_001057087.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei 668]
 gi|126453057|ref|YP_001064317.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei
           1106a]
 gi|134281410|ref|ZP_01768118.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 305]
 gi|217423958|ref|ZP_03455458.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 576]
 gi|226193182|ref|ZP_03788792.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
           Pakistan 9]
 gi|237814425|ref|YP_002898876.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
           MSHR346]
 gi|242316101|ref|ZP_04815117.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
           1106b]
 gi|254184095|ref|ZP_04890686.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
           1655]
 gi|254186561|ref|ZP_04893078.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254194632|ref|ZP_04901063.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei S13]
 gi|42766712|gb|AAS45439.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei]
 gi|126221513|gb|ABN85019.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 668]
 gi|126226699|gb|ABN90239.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
           1106a]
 gi|134247077|gb|EBA47163.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 305]
 gi|157934246|gb|EDO89916.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169651382|gb|EDS84075.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei S13]
 gi|184214627|gb|EDU11670.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
           1655]
 gi|217393021|gb|EEC33043.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 576]
 gi|225934782|gb|EEH30759.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
           Pakistan 9]
 gi|237505052|gb|ACQ97370.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
           MSHR346]
 gi|242139340|gb|EES25742.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
           1106b]
          Length = 276

 Score =  191 bits (486), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 93/206 (45%), Positives = 138/206 (66%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T  + T+LS  P +L+M+T F R IIV S+LR  +G  S PPN V++ LALF+T +VM
Sbjct: 74  VQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQAIGTASTPPNQVLVGLALFLTLFVM 133

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP LDR+     +P     +    A+QR   PF  FM   TRE DL+LF  ++ ++    
Sbjct: 134 SPVLDRAYNDAYKPFSEGTLQMDQAVQRGTAPFKAFMLKQTRETDLALFAKISKAAP--- 190

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +   + +   +L+P+F+ SEL+  F+IGF I +PFLIIDM+VA+++M+MGMMM+ P ++
Sbjct: 191 -MQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATV 249

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 250 SLPFKLMLFVLVDGWQLLIGSLAQSF 275


>gi|253990104|ref|YP_003041460.1| flagellar biosynthesis protein FliP [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253781554|emb|CAQ84717.1| flagellar biosynthetic protein flip precursor [Photorhabdus
           asymbiotica]
          Length = 251

 Score =  191 bits (486), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 98/229 (42%), Positives = 146/229 (63%), Gaps = 6/229 (2%)

Query: 19  AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
           A + L  +++ P      +W   V+T    T L   P  L+M+T F R IIV  +LR  +
Sbjct: 25  AAAQLPGIISQPLANGGQSWSLPVQTLVFITALGFIPAALLMMTSFTRIIIVLGLLRNAL 84

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G  S PPN V++ LALFMTF++MSP  D+  +    P   ++I+  TA++  A+P   FM
Sbjct: 85  GTPSAPPNQVLLGLALFMTFFIMSPVFDKVYQDAYLPFSEDKISLETALENGAKPLRQFM 144

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
              TRE DL+LF  +A      T     D +  R+L+P+F+ SEL+ +F+IGF + +PFL
Sbjct: 145 LRQTRENDLALFARLADQPPFET----ADSVPMRVLMPAFITSELKTAFQIGFTLFIPFL 200

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 201 IIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 249


>gi|333003044|gb|EGK22598.1| flagellar biosynthetic protein FliP [Shigella flexneri VA-6]
          Length = 245

 Score =  191 bits (486), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 101/239 (42%), Positives = 156/239 (65%), Gaps = 9/239 (3%)

Query: 9   LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66
           L+L+ P L FA+  L  + + P      +W   V+T    T L+  P +L+M+T F R I
Sbjct: 12  LWLIMP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +I+   A++
Sbjct: 69  IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           + A+P   FM   TRE DL LF  +A++      +   + +  RIL+P+++ SEL+ +F+
Sbjct: 129 KGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQ 184

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243


>gi|313682238|ref|YP_004059976.1| flagellar biosynthetic protein flip [Sulfuricurvum kujiense DSM
           16994]
 gi|313155098|gb|ADR33776.1| flagellar biosynthetic protein FliP [Sulfuricurvum kujiense DSM
           16994]
          Length = 244

 Score =  191 bits (486), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 93/193 (48%), Positives = 135/193 (69%), Gaps = 4/193 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP L++++T F RF+IVF  LR  +G   VPP  +++ LAL +T +VM P   ++ + GI
Sbjct: 54  APSLVLVMTTFTRFVIVFGFLRQALGTQQVPPTQLLVMLALILTVFVMEPVATKAYDEGI 113

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           +P    +IT   A ++  EPF  FM  NTREKDL+LF+ + H  +  +       +   I
Sbjct: 114 KPYSEEKITYDEAFEKTTEPFKNFMVRNTREKDLALFLRIRHMQNPQSI----KEVPLTI 169

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           +IP+FMISEL+ +FEIGFL+ LPFL+IDM+VA+I+M+MGMMMLPP  IS+PFK++ FV++
Sbjct: 170 VIPAFMISELKTAFEIGFLLFLPFLVIDMVVASILMSMGMMMLPPVMISMPFKILVFVMV 229

Query: 232 DGWSLLVENLVKS 244
           DGW+LL+ NL+ S
Sbjct: 230 DGWNLLIGNLIAS 242


>gi|271500076|ref|YP_003333101.1| flagellar biosynthetic protein FliP [Dickeya dadantii Ech586]
 gi|270343631|gb|ACZ76396.1| flagellar biosynthetic protein FliP [Dickeya dadantii Ech586]
          Length = 258

 Score =  191 bits (486), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 101/248 (40%), Positives = 160/248 (64%), Gaps = 10/248 (4%)

Query: 1   MIRYCFFA-LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLI 57
           ++RY   + L L+ P    A + L  +++ P      +W   V+T    T LS  P +L+
Sbjct: 16  LLRYPAASMLLLIAPH---ALAQLPSIISHPLPNGGQSWSLPVQTLIFITALSFIPAVLL 72

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           M+TCF R IIV S+LR  +G  + PPN V++ L+LF+TF+VMSP L+R  +   +P   +
Sbjct: 73  MMTCFTRIIIVLSLLRNALGTPTAPPNQVLLGLSLFLTFFVMSPVLNRIYDEAYRPFSED 132

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
           +I+   AI + ++P   FM   TRE DL+LF  +A        +   + +  R+L+P+++
Sbjct: 133 KISMEVAIDKGSKPLREFMLRQTREADLALFTRLAQIP----SLQGPEAVPMRVLVPAYV 188

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
            SEL+ +F+IGF I +PFL+ID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL
Sbjct: 189 TSELKTAFQIGFTIFIPFLLIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLL 248

Query: 238 VENLVKSF 245
           + +L +SF
Sbjct: 249 LGSLAQSF 256


>gi|147678411|ref|YP_001212626.1| flagellar biosynthesis protein FliP [Pelotomaculum
           thermopropionicum SI]
 gi|146274508|dbj|BAF60257.1| flagellar biosynthesis pathway, component FliP [Pelotomaculum
           thermopropionicum SI]
          Length = 257

 Score =  191 bits (486), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 94/194 (48%), Positives = 135/194 (69%), Gaps = 4/194 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP  L+M+T F R IIV S+LRT +G+   P N ++I LALF+T ++M+P      +  I
Sbjct: 67  APAFLVMMTSFTRIIIVLSLLRTALGVHQAPANQIVIGLALFLTVFIMAPVYREINDNSI 126

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           QP + NQI++  A +R  +P   FM   TREKDL LF+ +A          K + +   +
Sbjct: 127 QPYLQNQISQEEAQERGVKPLRDFMLRQTREKDLGLFISLAKMEKPE----KPEDVPLHV 182

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           +IPSF+ISEL+ +FEIGFL+ +PFL+IDM+VA+I+M+MGM MLPP  ISLPFK++ FV++
Sbjct: 183 VIPSFIISELKTAFEIGFLLFVPFLVIDMVVASILMSMGMFMLPPVMISLPFKILLFVMV 242

Query: 232 DGWSLLVENLVKSF 245
           DGW L+V++LV+SF
Sbjct: 243 DGWYLVVKSLVESF 256


>gi|317048609|ref|YP_004116257.1| flagellar biosynthetic protein FliP [Pantoea sp. At-9b]
 gi|316950226|gb|ADU69701.1| flagellar biosynthetic protein FliP [Pantoea sp. At-9b]
          Length = 244

 Score =  191 bits (486), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 98/229 (42%), Positives = 150/229 (65%), Gaps = 6/229 (2%)

Query: 19  AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
           A + L  +++ P      +W   V+T    T L+  P +L+M+T F R IIVF +LR  +
Sbjct: 18  AHAQLPGLVSHPLANGGQSWSLPVQTLVFITSLTFIPAVLLMMTSFTRIIIVFGLLRNAL 77

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G  S PPN V++ LALF+TF++M+PT D+       P   ++I+   AI + A+P   FM
Sbjct: 78  GTPSAPPNQVLVGLALFLTFFIMAPTFDKIYSDAYLPFSQDKISMDVAIDKGAQPLREFM 137

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
              TRE DL+LF  +A++      I   + +  RIL+P+++ SEL+ +F+IGF + +PFL
Sbjct: 138 LRQTREADLALFARLANTP----PIEGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFL 193

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LLV +L +SF
Sbjct: 194 IIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLVGSLAQSF 242


>gi|74312488|ref|YP_310907.1| flagellar biosynthesis protein FliP [Shigella sonnei Ss046]
 gi|73855965|gb|AAZ88672.1| flagellar biosynthesis [Shigella sonnei Ss046]
 gi|323168931|gb|EFZ54611.1| flagellar biosynthetic protein FliP [Shigella sonnei 53G]
          Length = 245

 Score =  191 bits (486), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 102/239 (42%), Positives = 156/239 (65%), Gaps = 9/239 (3%)

Query: 9   LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66
           L+LVTP L FA+  L  + + P      +W   V+T    T L+  P +L+M+T F R I
Sbjct: 12  LWLVTP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IVF +LR  +G  S PPN V++ LALF+TF++MS  +D+      QP    +I+   A++
Sbjct: 69  IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSSVIDKIYVDAYQPFSEEKISMQEALE 128

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           + A+P   FM   TRE DL LF  +A++      +   + +  RIL+P+++ SEL+ +F+
Sbjct: 129 KGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQ 184

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243


>gi|325273552|ref|ZP_08139782.1| flagellar biosynthesis protein FliP [Pseudomonas sp. TJI-51]
 gi|324101312|gb|EGB98928.1| flagellar biosynthesis protein FliP [Pseudomonas sp. TJI-51]
          Length = 255

 Score =  191 bits (486), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 94/201 (46%), Positives = 134/201 (66%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           I T LS  P  +I++T F R IIVFSILR  +G+   P N ++  +ALF+T ++M+P  D
Sbjct: 56  IMTALSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQLLTGMALFLTMFIMAPVFD 115

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           R  +  +QP +  Q+T   AI +   P   FM   TR+ DL LFM ++    + TDI   
Sbjct: 116 RVNQDALQPYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDLDLFMRLS----KRTDIAGP 171

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D +   IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA+++MAMGMMML P  ISLPFK
Sbjct: 172 DQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFK 231

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW+L++  L  SF
Sbjct: 232 IMLFVLVDGWALIMGTLASSF 252


>gi|124516299|gb|EAY57807.1| Flagellar biosynthesis protein FliP [Leptospirillum rubarum]
          Length = 265

 Score =  191 bits (486), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 92/193 (47%), Positives = 134/193 (69%), Gaps = 3/193 (1%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +L+M+T F R ++V S LR  MG   VPPN V++ L+LF+TF+VM+P      E  I 
Sbjct: 75  PAILVMMTSFTRIVVVLSFLRQAMGTAQVPPNQVLVGLSLFLTFFVMAPVWKTMDETAIT 134

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P ++ +I    A+ R  +P   FM    R+KD++LF+ +AH     +     D I   +L
Sbjct: 135 PYLDKKIAPDVAVDRAMKPVRAFMFRQVRQKDIALFVRIAHLPRTPS---SPDDIPTYVL 191

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           IP+F++SEL  +FE+GFLI LPFLI+DM+V++++M+MGMMMLPPT +SLPFK++ FVL+D
Sbjct: 192 IPAFVVSELSTAFEMGFLIYLPFLILDMVVSSVLMSMGMMMLPPTVVSLPFKILLFVLVD 251

Query: 233 GWSLLVENLVKSF 245
           GWSL+V +LV+SF
Sbjct: 252 GWSLVVGSLVRSF 264


>gi|26991044|ref|NP_746469.1| flagellar biosynthesis protein FliP [Pseudomonas putida KT2440]
 gi|24986076|gb|AAN69933.1|AE016632_4 flagellar biosynthetic protein FliP [Pseudomonas putida KT2440]
 gi|5921665|gb|AAD01927.2| FliP [Pseudomonas putida]
 gi|313497809|gb|ADR59175.1| FliP [Pseudomonas putida BIRD-1]
          Length = 251

 Score =  191 bits (486), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 94/201 (46%), Positives = 134/201 (66%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           I T LS  P  +I++T F R IIVFSILR  +G+   P N ++  +ALF+T ++M+P  D
Sbjct: 52  IMTALSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQLLTGMALFLTMFIMAPVFD 111

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           R  +  +QP +  Q+T   AI +   P   FM   TR+ DL LFM ++    + TDI   
Sbjct: 112 RVNQDALQPYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDLDLFMRLS----KRTDIAGP 167

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D +   IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA+++MAMGMMML P  ISLPFK
Sbjct: 168 DQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFK 227

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW+L++  L  SF
Sbjct: 228 IMLFVLVDGWALIMGTLASSF 248


>gi|283785718|ref|YP_003365583.1| flagellar biosynthetic protein FliP [Citrobacter rodentium ICC168]
 gi|282949172|emb|CBG88780.1| flagellar biosynthetic protein FliP [Citrobacter rodentium ICC168]
          Length = 245

 Score =  191 bits (486), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 97/229 (42%), Positives = 149/229 (65%), Gaps = 6/229 (2%)

Query: 19  AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
           A + L  ++  P      +W   V+T    T L+  P +L+M+T F R IIVF +LR  +
Sbjct: 19  ALAQLPGLVAQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRIIIVFGLLRNAL 78

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G  S PPN V++ LALF+TF++MSP +D+      QP    +I+   A+ + A+P   FM
Sbjct: 79  GTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVEAYQPFSEEKISMQEALDKGAQPLREFM 138

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
              TRE DL+LF  +A+S      +   + +  RIL+P+++ SEL+ +F+IGF I +PFL
Sbjct: 139 LRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFL 194

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 195 IIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243


>gi|149377875|ref|ZP_01895604.1| flagellar biosynthesis protein P [Marinobacter algicola DG893]
 gi|149357817|gb|EDM46310.1| flagellar biosynthesis protein P [Marinobacter algicola DG893]
          Length = 254

 Score =  191 bits (485), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 94/240 (39%), Positives = 154/240 (64%), Gaps = 20/240 (8%)

Query: 18  FAKSSLHDVMNIPA------------DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65
           +A ++L D+  IPA            + S+S   ++   + T L+  P +L+M+T F R 
Sbjct: 21  WAPAALADIPGIPAFTVTPGEEEGVQEYSVS---LQILALMTALTFLPAMLMMMTSFTRI 77

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
           I+VF+ILR  +G+ S P N +++ L LF+T ++M P L+   E+ +QP M  +++   A+
Sbjct: 78  IVVFAILRQALGLQSTPSNQILLGLTLFLTIFIMKPVLEEVNEVALQPYMQEELSSLEAV 137

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
           ++ ++PF  FM   TRE DL LFM +A   +   +      + + +L+P+F+ SEL+ +F
Sbjct: 138 EQASQPFRKFMLAQTRESDLGLFMRIADEQYDTAE-----DVSFWVLLPAFVTSELKTAF 192

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +IGF++ +PFLIIDM+VA+++MAMGMMML P  ISLPFK++ FVL+DGW+L++  L  S+
Sbjct: 193 QIGFILFIPFLIIDMVVASVLMAMGMMMLSPIIISLPFKIMLFVLVDGWALIMGTLAASY 252


>gi|251789178|ref|YP_003003899.1| flagellar biosynthetic protein FliP [Dickeya zeae Ech1591]
 gi|247537799|gb|ACT06420.1| flagellar biosynthetic protein FliP [Dickeya zeae Ech1591]
          Length = 258

 Score =  191 bits (485), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 97/239 (40%), Positives = 155/239 (64%), Gaps = 9/239 (3%)

Query: 9   LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66
           L L+ P    A + L  +++ P      +W   ++T    T LS  P +L+M+TCF R I
Sbjct: 25  LLLIAPH---ALAQLPGIISQPLANGGQSWSLPIQTLVFITALSFIPAVLLMMTCFTRII 81

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IV S+LR  +G  + PPN V++ L+LF+TF+VMSP L+R  +   +P   ++I+   AI 
Sbjct: 82  IVLSLLRNALGTPTAPPNQVLLGLSLFLTFFVMSPVLNRIYDEAYRPFSEDKISMEVAID 141

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           + ++P   FM   TRE DL+LF  +A        +   + +  R+L+P+++ SEL+ +F+
Sbjct: 142 KGSQPLREFMLRQTREADLALFTRLAQIP----SLQGPEAVPMRVLVPAYVTSELKTAFQ 197

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGF I +PFL+ID++VA+++MA+GMMM+PP +I+LPFK++ FVL+DGW LL+ +L +SF
Sbjct: 198 IGFTIFIPFLLIDLVVASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLLGSLAQSF 256


>gi|291519582|emb|CBK74803.1| flagellar biosynthetic protein FliP [Butyrivibrio fibrisolvens
           16/4]
          Length = 284

 Score =  191 bits (485), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 92/201 (45%), Positives = 138/201 (68%), Gaps = 5/201 (2%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + TIL+++P +LIM+T F R +IV   +R  +G  + PPN V+I LALF+T ++MSP L 
Sbjct: 88  VLTILTLSPSILIMLTSFTRCVIVLHFVRAAIGTNTAPPNQVLIGLALFLTLFIMSPVLT 147

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
                 I P    +IT+  AI     P   FM   T+ KDL+LF D+A  ++      + 
Sbjct: 148 TIKTEAIDPFDAGEITQQEAIDAAIAPVREFMYGQTQTKDLNLFCDIAGITYE-----EY 202

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D + + +++P+F++SELR +F IGFLI +PF++IDM+VA+++M+MGMMMLPPT+ISLPFK
Sbjct: 203 DEVPFTVVVPAFILSELRTAFIIGFLIYVPFIVIDMVVASVLMSMGMMMLPPTTISLPFK 262

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW L++  LVK+F
Sbjct: 263 ILLFVLVDGWDLVIGGLVKTF 283


>gi|329298603|ref|ZP_08255939.1| flagellar biosynthesis protein FliP [Plautia stali symbiont]
          Length = 341

 Score =  191 bits (485), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 94/206 (45%), Positives = 141/206 (68%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T    T L+  P +L+M+T F R IIVF +LR  +G  S PPN V++ LALF+ F++M
Sbjct: 138 VQTLVFITSLTFIPAVLLMITSFTRIIIVFGLLRNALGTPSAPPNQVMLGLALFLNFFIM 197

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +PT D+       P   ++I+   AI + A+P   FM   TRE DL+LF  +A+S+    
Sbjct: 198 APTFDKIYTDAYLPFSQDKISMDVAIDKGAQPLREFMLRQTRETDLALFARLANSA---- 253

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            I   + +  RIL+P+++ SEL+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP +I
Sbjct: 254 PIQGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATI 313

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW LLV +L +SF
Sbjct: 314 SLPFKLMLFVLVDGWQLLVGSLAQSF 339


>gi|312879603|ref|ZP_07739403.1| flagellar biosynthetic protein FliP [Aminomonas paucivorans DSM
           12260]
 gi|310782894|gb|EFQ23292.1| flagellar biosynthetic protein FliP [Aminomonas paucivorans DSM
           12260]
          Length = 258

 Score =  191 bits (485), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 93/216 (43%), Positives = 146/216 (67%), Gaps = 7/216 (3%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P D++++  IV    + T+LS+AP +++M+T F R ++V   +R  MG+  +PPN V+++
Sbjct: 49  PQDVALTLQIV---ALMTVLSMAPAIILMLTSFTRILVVLGFIRNAMGLQQMPPNQVLVT 105

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           LALF+TF+ M+P  D+    G+ P MN QI    A  R  +P   FM   TREK+LSL +
Sbjct: 106 LALFLTFFTMTPVWDQIYGKGLVPYMNGQIPAAQAWDRSIKPLRAFMFRQTREKELSLMV 165

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
            +A            D I  R+L+P+FM+SEL+ +F++G ++ +PF++IDMIV++++M+M
Sbjct: 166 RLAKMPQPKN----QDGIPTRVLMPAFMLSELKTAFQMGVVLFIPFIVIDMIVSSVLMSM 221

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GM+MLPP  ISLPFKV+ FV+ DGW+L++ +LV SF
Sbjct: 222 GMIMLPPMMISLPFKVLLFVMADGWNLVIASLVTSF 257


>gi|218133679|ref|ZP_03462483.1| hypothetical protein BACPEC_01548 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991054|gb|EEC57060.1| hypothetical protein BACPEC_01548 [Bacteroides pectinophilus ATCC
           43243]
          Length = 278

 Score =  191 bits (485), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 93/215 (43%), Positives = 147/215 (68%), Gaps = 2/215 (0%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
            D S    +++   + TI+S+AP +L+++T F R +IV    R  +G+ ++PPN V+I L
Sbjct: 65  GDGSDMASVLQMLLVLTIISLAPSILMLLTSFTRIVIVLHFTRAALGVQTIPPNQVLIGL 124

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           ++F+TF+VMSPT  +  +  I+PL NN+IT   A     +P   FM      KDL  F++
Sbjct: 125 SIFLTFFVMSPTFTQVYDSAIKPLSNNEITTEQAFDAGIKPMRAFMLKQVSTKDLDTFLN 184

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           +A +   +  I   D I   +LIP+F+ISELR +F IGFLI +PF++IDM+V++++M+MG
Sbjct: 185 IAGTEAGS--IENEDDIPLNVLIPAFIISELRIAFIIGFLIYIPFIVIDMVVSSVLMSMG 242

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMMLPPT+IS+PFK++ FV+ DGW+L++ NL+++F
Sbjct: 243 MMMLPPTTISMPFKILLFVMADGWNLVIGNLMQTF 277


>gi|260438790|ref|ZP_05792606.1| flagellar biosynthetic protein FliP [Butyrivibrio crossotus DSM
           2876]
 gi|292808779|gb|EFF67984.1| flagellar biosynthetic protein FliP [Butyrivibrio crossotus DSM
           2876]
          Length = 272

 Score =  191 bits (485), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 93/201 (46%), Positives = 140/201 (69%), Gaps = 2/201 (0%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T++++AP +LIM+T F R IIV    R+ +G  + PPN V++ LALF+TF++M+PT  
Sbjct: 73  VLTVIALAPSILIMLTSFTRIIIVLHFTRSAIGTQTAPPNQVLVGLALFLTFFIMAPTFK 132

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              +  I+PL  N+IT   A     +P   FM   T  KD+ +F+D+A      + +   
Sbjct: 133 TVYDDAIKPLSKNEITSEEAYDVGIKPIRQFMLEQTNTKDIRMFIDIAKVD--TSTLKDY 190

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D I  ++LIPSF++SELR +F IGFLI +PF+IIDM+V++ +M+MGMMMLPPT+ISLPFK
Sbjct: 191 DDIPIQVLIPSFIVSELRIAFIIGFLIYIPFIIIDMVVSSALMSMGMMMLPPTTISLPFK 250

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ F++ DGW+L++ NLVK+F
Sbjct: 251 ILLFIMADGWNLVIGNLVKTF 271


>gi|206603142|gb|EDZ39622.1| Flagellar biosynthesis protein FliP [Leptospirillum sp. Group II
           '5-way CG']
          Length = 265

 Score =  191 bits (485), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 92/193 (47%), Positives = 134/193 (69%), Gaps = 3/193 (1%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +L+M+T F R ++V S LR  MG   VPPN V++ L+LF+TF+VM+P      E  I 
Sbjct: 75  PAILVMMTSFTRIVVVLSFLRQAMGTAQVPPNQVLVGLSLFLTFFVMAPVWKTMDETAIT 134

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P ++ +I    A+ R  +P   FM    R+KD++LF+ +AH     +     D I   +L
Sbjct: 135 PYLDKKIAPDVAVDRAMKPVRAFMFRQVRQKDIALFVRIAHLPRTPS---SPDDIPTYVL 191

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           IP+F++SEL  +FE+GFLI LPFLI+DM+V++++M+MGMMMLPPT +SLPFK++ FVL+D
Sbjct: 192 IPAFVVSELSTAFEMGFLIYLPFLILDMVVSSVLMSMGMMMLPPTVVSLPFKILLFVLVD 251

Query: 233 GWSLLVENLVKSF 245
           GWSL+V +LV+SF
Sbjct: 252 GWSLVVGSLVRSF 264


>gi|56964019|ref|YP_175750.1| flagellar biosynthesis protein FliP [Bacillus clausii KSM-K16]
 gi|56910262|dbj|BAD64789.1| flagellar biosynthetic protein FliP [Bacillus clausii KSM-K16]
          Length = 227

 Score =  191 bits (484), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 96/201 (47%), Positives = 136/201 (67%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T+L+IAP +LIM+TCF R IIV + +R G+   S PPN V+I LALF+T ++M+P + 
Sbjct: 30  LLTVLTIAPGILIMMTCFTRIIIVLAFVRQGLATQSTPPNQVLIGLALFITAFIMAPVIQ 89

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              E    PL + + +   A +    P   FM  +TREKDL+LFM       R   I   
Sbjct: 90  EVYETAYVPLADGEYSSEEAFEAAVVPIKEFMSAHTREKDLALFMGYG-GYDRPASI--- 145

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D +    L+P+F ISEL+ +F+IGFLI +PFL+IDMIVA+++M+MGMMMLPP  I+LPFK
Sbjct: 146 DDVPLTALVPAFAISELKTAFQIGFLIFIPFLVIDMIVASVLMSMGMMMLPPVMIALPFK 205

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           V+ FVL+DGW L+V++L+ S+
Sbjct: 206 VLLFVLVDGWYLVVQSLLISY 226


>gi|259908768|ref|YP_002649124.1| flagellar biosynthesis protein FliP [Erwinia pyrifoliae Ep1/96]
 gi|224964390|emb|CAX55899.1| Flagellar biosynthesis protein [Erwinia pyrifoliae Ep1/96]
 gi|283478744|emb|CAY74660.1| Flagellar biosynthetic protein FliP precursor [Erwinia pyrifoliae
           DSM 12163]
 gi|310767334|gb|ADP12284.1| flagellar biosynthesis protein FliP [Erwinia sp. Ejp617]
          Length = 245

 Score =  191 bits (484), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 95/227 (41%), Positives = 148/227 (65%), Gaps = 6/227 (2%)

Query: 21  SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           + L  +++ P      +W   V+T    T L+  P +L+M+T F R IIVF +LR  +G 
Sbjct: 21  AQLPGLVSQPTANGGQSWSLPVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGT 80

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
            S PPN V++ L+LF+TF++M P  D+      QP   ++I+   AI + A+P   FM  
Sbjct: 81  PSAPPNQVLLGLSLFLTFFIMGPVFDKMYTDAYQPFSEDKISMQEAIDKGAQPLREFMLR 140

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
            TRE DL+LF  +A++      I   + +  RIL+P+++ SEL+ +F+IGF + +PFLII
Sbjct: 141 QTREADLALFARLANTPP----IAGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLII 196

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           D++VA+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 197 DLVVASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVSSLAQSF 243


>gi|332981449|ref|YP_004462890.1| flagellar biosynthetic protein FliP [Mahella australiensis 50-1
           BON]
 gi|332699127|gb|AEE96068.1| flagellar biosynthetic protein FliP [Mahella australiensis 50-1
           BON]
          Length = 257

 Score =  191 bits (484), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 94/196 (47%), Positives = 139/196 (70%), Gaps = 8/196 (4%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +LIM+T F R I+V S +R+ +G+  +PPN VII LALF+TF+ M+P   +  +  +
Sbjct: 67  APAILIMLTSFTRIIVVLSFVRSALGLQQMPPNQVIIGLALFLTFFTMAPVATQINQTAL 126

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA--HSSHRNTDITKNDHIEY 169
           QP MN QI +  AI     P   FM   TREKDL+LF++++      + +DI+       
Sbjct: 127 QPYMNGQIEQQQAIDNAMVPLREFMFKETREKDLNLFVNLSGMDKPEQLSDISST----- 181

Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
            +LIP+F+ISEL+ +F+IGFLI +PF++IDM+VAT +M+MGMMM+PP  ISLPFKV+ F+
Sbjct: 182 -VLIPAFIISELKTAFQIGFLIYVPFIVIDMVVATTLMSMGMMMIPPVMISLPFKVLLFI 240

Query: 230 LIDGWSLLVENLVKSF 245
           ++DGW+L+V++L+ SF
Sbjct: 241 MVDGWNLVVQSLITSF 256


>gi|317492418|ref|ZP_07950847.1| flagellar biosynthetic protein FliP [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316919757|gb|EFV41087.1| flagellar biosynthetic protein FliP [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 248

 Score =  191 bits (484), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 94/206 (45%), Positives = 140/206 (67%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T    T L+  P  L+M+T F R IIV  +LR+ +G  S PPN V++ LALF+TF+VM
Sbjct: 45  VQTLVFLTSLTFLPAALLMMTSFTRIIIVLGLLRSALGTPSAPPNQVMLGLALFLTFFVM 104

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP  D+  +   QP   ++IT   A+ R A+P   FM   TRE DL+L+  +A+      
Sbjct: 105 SPVFDKIYQDAYQPFSQDKITMDVAMDRGAQPLREFMLRQTRETDLALYAKLANLPQ--- 161

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +   + +  RIL+P+++ SEL+ +F+IGF I +PFLIID++VA+++MA+GMMM+PP +I
Sbjct: 162 -MAGPEDVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATI 220

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 221 SLPFKLMLFVLVDGWQLLLGSLAQSF 246


>gi|152986552|ref|YP_001349235.1| flagellar biosynthesis protein FliP [Pseudomonas aeruginosa PA7]
 gi|150961710|gb|ABR83735.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa PA7]
          Length = 255

 Score =  191 bits (484), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 95/201 (47%), Positives = 135/201 (67%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           I T LS  P  ++++T F R IIVFSILR  +G+ S P N V++ LALF+T +VM+P  D
Sbjct: 56  IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFD 115

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           R     +QP +N QI    A+QR   P   FM   TR  DL LF+ ++    + TDI+  
Sbjct: 116 RINSQALQPYLNEQIPAQEALQRAEVPLKAFMLAQTRTSDLELFVRLS----KRTDISGP 171

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           +     IL+P+F+ SEL+ +F+IGF+I +PFLIID++V++++MAMGMMML P  ISLPFK
Sbjct: 172 EATPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMMMLSPLIISLPFK 231

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW+L++  L  SF
Sbjct: 232 IMLFVLVDGWALIIGTLAGSF 252


>gi|300994267|ref|ZP_07180819.1| flagellar biosynthetic protein FliP [Escherichia coli MS 200-1]
 gi|300304932|gb|EFJ59452.1| flagellar biosynthetic protein FliP [Escherichia coli MS 200-1]
          Length = 245

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 101/239 (42%), Positives = 156/239 (65%), Gaps = 9/239 (3%)

Query: 9   LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66
           L+L+TP L FA+  L  + + P      +W   V+T    T L+    +L+M+T F R I
Sbjct: 12  LWLITP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIQAILLMMTSFTRII 68

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +I+   A++
Sbjct: 69  IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           + A+P   FM   TRE DL LF  +A++      +   + +  RIL+P+++ SEL+ +F+
Sbjct: 129 KGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQ 184

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243


>gi|290475714|ref|YP_003468603.1| flagellar biosynthesis protein [Xenorhabdus bovienii SS-2004]
 gi|289175036|emb|CBJ81839.1| flagellar biosynthesis [Xenorhabdus bovienii SS-2004]
          Length = 269

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 96/229 (41%), Positives = 146/229 (63%), Gaps = 6/229 (2%)

Query: 19  AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
           A ++L  +++ P      +W   V+T    T L   P  L+M+T F R IIV  +LR  +
Sbjct: 43  AAAALPGIISQPMANGGQSWSLPVQTLVFITALGFIPAALLMMTSFTRIIIVLGLLRNAL 102

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G  S PPN ++I LALFMTF++MSP  D+  +    P   ++I+   A+ + A+P   FM
Sbjct: 103 GTPSAPPNQIMIGLALFMTFFIMSPVFDKVYQDAYLPFSEDKISLEAALDKGAQPLRQFM 162

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
              TR+ DL+LF  +A      T     D +  R+L+P+F+ SEL+ +F+IGF + +PFL
Sbjct: 163 LRQTRQTDLALFARLADQDAFET----ADSVPIRVLVPAFITSELKTAFQIGFTLFIPFL 218

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 219 IIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 267


>gi|296103629|ref|YP_003613775.1| Flagellar biosynthetic protein FliP [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058088|gb|ADF62826.1| Flagellar biosynthetic protein FliP [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 243

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 93/206 (45%), Positives = 140/206 (67%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T  + +  +  P +L+M+T F R IIV  ++R  +G  + PPN V++ L+LF+TF+VM
Sbjct: 40  VQTLLLLSGFTFIPAILLMMTGFTRIIIVLGLMRNALGTPTAPPNQVLVGLSLFLTFFVM 99

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP   +  E   QPL  N+IT   A+    +P   FM + TRE DL++F  +A    +  
Sbjct: 100 SPVFSQIYEKAWQPLQENKITMEVALTEGVKPLRAFMLDQTRESDLAMFARIA----KTP 155

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           DI   + +   IL+P+F+ SEL+ +F+IGF I +PFLIID++VA+I+MA+GMMM+PPT+I
Sbjct: 156 DIASPEEVPLSILVPAFITSELKTAFQIGFTIFIPFLIIDLVVASILMALGMMMVPPTTI 215

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           +LPFK++ FVL+DGW LLV +L +SF
Sbjct: 216 ALPFKLMLFVLVDGWQLLVGSLAQSF 241


>gi|89098628|ref|ZP_01171510.1| flagellar biosynthesis protein P [Bacillus sp. NRRL B-14911]
 gi|89086590|gb|EAR65709.1| flagellar biosynthesis protein P [Bacillus sp. NRRL B-14911]
          Length = 221

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 91/194 (46%), Positives = 140/194 (72%), Gaps = 4/194 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +LI++TCF R IIV S +RT +    +PPN V++ L+LF+TF++M+PT     E  +
Sbjct: 32  APSILILMTCFTRIIIVLSFVRTALATQQMPPNQVLVGLSLFLTFFIMAPTFQEVNEQAL 91

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
            PL N++I    A ++ + PF  FM  +TR+KDL+LF++  +S     +  ++  I    
Sbjct: 92  TPLFNDEINLEQAYEKASVPFKDFMSAHTRQKDLALFLE--YSGAETPESIQD--IPLTA 147

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           L+P+F ISE++ +F+IGF+I +PFL+IDMIVA+++M+MGMMMLPP  ISLPFK++ FVL+
Sbjct: 148 LVPAFAISEIKTAFQIGFMIFIPFLVIDMIVASVLMSMGMMMLPPVMISLPFKILLFVLV 207

Query: 232 DGWSLLVENLVKSF 245
           DGW L+V++L++SF
Sbjct: 208 DGWYLVVKSLLQSF 221


>gi|167579277|ref|ZP_02372151.1| flagellar biosynthesis protein FliP [Burkholderia thailandensis
           TXDOH]
 gi|167617383|ref|ZP_02386014.1| flagellar biosynthesis protein FliP [Burkholderia thailandensis
           Bt4]
          Length = 253

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 92/206 (44%), Positives = 138/206 (66%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T  + T+LS  P +L+M+T F R IIV S+LR  +G  S PPN V++ LALF+T +VM
Sbjct: 51  VQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQAIGTASTPPNQVLVGLALFLTLFVM 110

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP LD++     +P     +    A+QR   PF  FM   TRE DL+LF  ++ ++    
Sbjct: 111 SPVLDKAYTDAYKPFSEGTLQMDQAVQRGTAPFKTFMLKQTRETDLALFAKISKAAP--- 167

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +   + +   +L+P+F+ SEL+  F+IGF I +PFLIIDM+VA+++M+MGMMM+ P ++
Sbjct: 168 -MQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATV 226

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 227 SLPFKLMLFVLVDGWQLLIGSLAQSF 252


>gi|259907616|ref|YP_002647972.1| Flagellar biosynthetic protein FliP [Erwinia pyrifoliae Ep1/96]
 gi|224963238|emb|CAX54722.1| Flagellar biosynthetic protein FliP [Erwinia pyrifoliae Ep1/96]
 gi|283477458|emb|CAY73374.1| Flagellar biosynthetic protein FliP precursor [Erwinia pyrifoliae
           DSM 12163]
          Length = 247

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 90/206 (43%), Positives = 142/206 (68%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T  + + L+  P +L+M+T F R IIV  ++R  +G  + PPN V++ LALF+TFYVM
Sbjct: 44  VQTLVLLSSLTFLPAVLLMMTGFTRIIIVLGLMRNALGTPTAPPNQVLVGLALFLTFYVM 103

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP  ++  +   QPL  ++IT   A+++  +P   FM + TRE DL++F  +A +     
Sbjct: 104 SPVFNQIYQQAWQPLQEDKITMEVALEQGVKPLRAFMLDQTRENDLAMFAQIAKAG---- 159

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           +    + +   IL+P+F+ SEL+ +F+IGF I +PFLIID++VA+I+MA+GMMM+PP +I
Sbjct: 160 EFKGPEEVPLGILVPAFVTSELKTAFQIGFTIFIPFLIIDLVVASILMALGMMMVPPATI 219

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           +LPFK++ FVL+DGW LL+ +L +SF
Sbjct: 220 ALPFKLMLFVLVDGWQLLMGSLAQSF 245


>gi|167560941|ref|ZP_02353857.1| flagellar biosynthesis protein FliP [Burkholderia oklahomensis
           EO147]
 gi|167568200|ref|ZP_02361074.1| flagellar biosynthesis protein FliP [Burkholderia oklahomensis
           C6786]
          Length = 253

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 92/206 (44%), Positives = 138/206 (66%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T  + T+LS  P +L+M+T F R IIV S+LR  +G  S PPN V++ LALF+T +VM
Sbjct: 51  VQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQALGTASTPPNQVLVGLALFLTLFVM 110

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP LD++     +P     +    A+QR   PF  FM   TRE DL+LF  ++ ++    
Sbjct: 111 SPVLDKAYADAYKPFSEGTLQMDQAVQRGTAPFKGFMLKQTRETDLALFAKISKAAP--- 167

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +   + +   +L+P+F+ SEL+  F+IGF I +PFLIIDM+VA+++M+MGMMM+ P ++
Sbjct: 168 -MQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATV 226

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 227 SLPFKLMLFVLVDGWQLLIGSLAQSF 252


>gi|104782808|ref|YP_609306.1| flagellar biosynthesis protein FliP [Pseudomonas entomophila L48]
 gi|95111795|emb|CAK16519.1| flagellar biosynthetic protein FliP [Pseudomonas entomophila L48]
          Length = 251

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 95/201 (47%), Positives = 134/201 (66%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           I T LS  P  +I++T F R IIVFSILR  +G+   P N V+  +ALF+T ++M+P  +
Sbjct: 52  IMTALSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQVLTGMALFLTMFIMAPVFE 111

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           R  +  IQP +  Q+T   AI +   P   FM   TR+ DL LFM ++    + TDI   
Sbjct: 112 RVNKDAIQPYLAEQMTAQQAIDKAQGPLKDFMLAQTRQSDLDLFMRLS----KRTDIAGP 167

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D +   IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA+++MAMGMMML P  ISLPFK
Sbjct: 168 DQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFK 227

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW+L++  L  SF
Sbjct: 228 IMLFVLVDGWALIMGTLAGSF 248


>gi|299066546|emb|CBJ37736.1| Flagellar biosynthetic protein FliP [Ralstonia solanacearum CMR15]
          Length = 227

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 93/200 (46%), Positives = 138/200 (69%), Gaps = 4/200 (2%)

Query: 46  FTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDR 105
            T+L++ P LL+ VT F R IIV S+LR G+GM   PPN  +I LALF+T + MSPTL++
Sbjct: 31  LTVLAVLPALLVSVTSFLRIIIVLSMLRHGLGMQETPPNTALIGLALFLTLFTMSPTLEQ 90

Query: 106 SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165
                 QP M   I+   A ++ + P   FM   TRE+DL+L ++++ +    +     D
Sbjct: 91  INRQAFQPFMAGTISMEQAYEKGSAPLRDFMVRQTREQDLALMVELSKAKTPQS----MD 146

Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225
            I    LIP++M+SELR +F+IGF++ LPFL+ID++V++I+MA+GMMM+PP+++SLP KV
Sbjct: 147 DISNVQLIPAYMLSELRTAFQIGFVVFLPFLLIDLVVSSILMALGMMMMPPSTVSLPLKV 206

Query: 226 IFFVLIDGWSLLVENLVKSF 245
           + FVL+DGW LL++ LV SF
Sbjct: 207 LMFVLMDGWGLLLKALVGSF 226


>gi|83594162|ref|YP_427914.1| flagellar biosynthesis protein FliP [Rhodospirillum rubrum ATCC
           11170]
 gi|83577076|gb|ABC23627.1| Flagellar transport protein FliP [Rhodospirillum rubrum ATCC 11170]
          Length = 264

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 107/212 (50%), Positives = 155/212 (73%), Gaps = 5/212 (2%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           S +  I++  G+ T+LS+AP LLIMVT F R ++V SILR  +   S PPN+V++SLALF
Sbjct: 55  STTARIIQLVGLLTVLSVAPGLLIMVTSFTRIVVVLSILRQALATQSTPPNMVMVSLALF 114

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           MTF++M+PT  ++ + G+ PL+  QI+E  A  R   PF  FM  + R+KDL LFM    
Sbjct: 115 MTFFIMAPTFQQAWDQGLSPLIQEQISEEEAFTRTVAPFRTFMLAHVRDKDLELFM---- 170

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
           S ++ T    +D +  + LIP+FMISELRR+FEIGFLI LPF++IDM++A+++M+MGMMM
Sbjct: 171 SFNKETAAQPSD-VSTQALIPAFMISELRRAFEIGFLIFLPFVVIDMVIASVLMSMGMMM 229

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LPP  +++PFK+IFFVL+DGW L++ +L+ S+
Sbjct: 230 LPPMMLAMPFKLIFFVLVDGWYLVIGSLLSSY 261


>gi|260432140|ref|ZP_05786111.1| flagellar biosynthetic protein FliP [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415968|gb|EEX09227.1| flagellar biosynthetic protein FliP [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 243

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 95/212 (44%), Positives = 140/212 (66%), Gaps = 3/212 (1%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           SIS   ++   + T+LS+AP L IM+TCFP  + V +ILR G+G+   PPN++I+SLALF
Sbjct: 34  SISARTIQLILLITVLSLAPGLAIMITCFPFLVTVLAILRQGIGLQQSPPNMLIVSLALF 93

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           +T++VM P   ++ E GI+P++   +    A++R   PF  FM       D   F  MA 
Sbjct: 94  LTYFVMEPVFTQAWETGIRPMVEETMEVEPALERALVPFREFMAARL---DAETFQAMAA 150

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
                  +  +      +L+PSFM+SE+ R+F+IGFLI LPFLIID++VA ++M+MGMMM
Sbjct: 151 LRPDGEAMELSPQAPLSVLMPSFMLSEIARAFQIGFLIFLPFLIIDLVVAAVLMSMGMMM 210

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +PP ++SLPFK+ FFV+ DGWSL+   LV+S+
Sbjct: 211 VPPATVSLPFKLAFFVIADGWSLIAGALVRSY 242


>gi|330814980|ref|YP_004358685.1| Flagellar biosynthetic protein FliP [Burkholderia gladioli BSR3]
 gi|327367373|gb|AEA58729.1| Flagellar biosynthetic protein FliP [Burkholderia gladioli BSR3]
          Length = 279

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 94/206 (45%), Positives = 139/206 (67%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T  + T+LS  P +++M+T F R IIV S+LR  +G  + PPN V++ LALF+T +VM
Sbjct: 77  VQTMLLLTMLSFLPAIVLMMTSFTRIIIVLSLLRQALGTTTTPPNQVLVGLALFLTLFVM 136

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP LDR+   G QP     +    A+QR   PF  FM   TRE DL+LF  ++ +     
Sbjct: 137 SPVLDRAYTDGYQPFSAGTLPMDQAVQRGLAPFKTFMLKQTRESDLALFARISKAP---- 192

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +   + +   +L+P+F+ SEL+  F+IGF I +PFLIID++VA+++M+MGMMM+ PT+I
Sbjct: 193 PMQGPEDVPLPLLVPAFLTSELKTGFQIGFTIFIPFLIIDLVVASVLMSMGMMMVSPTTI 252

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 253 SLPFKLMLFVLVDGWQLLIGSLAQSF 278


>gi|163794138|ref|ZP_02188111.1| Flagellar biosynthesis pathway [alpha proteobacterium BAL199]
 gi|159180752|gb|EDP65271.1| Flagellar biosynthesis pathway [alpha proteobacterium BAL199]
          Length = 253

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 104/194 (53%), Positives = 140/194 (72%), Gaps = 4/194 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +L+MVT F R +IV  +LRT +G    PPNLV+ISLALF+T ++M+PTL  +   G+
Sbjct: 59  APGILVMVTSFTRIVIVLGLLRTALGTQQSPPNLVMISLALFLTGFIMTPTLKEAWTNGV 118

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           QPL+  +I E  A   V +PF  FM    REKDL LF DMA      T +    +   ++
Sbjct: 119 QPLIEERIDEIEAFDAVVQPFRGFMLRTVREKDLRLFEDMAQVGPAETGL----NAPLQV 174

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           LIP+FMISELRR+FEIGFL+ LPF+IIDM++A+++M+MGMMM+PP  ISLPFK+IFFVL+
Sbjct: 175 LIPAFMISELRRAFEIGFLLYLPFVIIDMVIASVLMSMGMMMVPPVMISLPFKLIFFVLV 234

Query: 232 DGWSLLVENLVKSF 245
           DGW ++  +LV+SF
Sbjct: 235 DGWYMIAGSLVRSF 248


>gi|260893864|ref|YP_003239961.1| flagellar biosynthetic protein FliP [Ammonifex degensii KC4]
 gi|260866005|gb|ACX53111.1| flagellar biosynthetic protein FliP [Ammonifex degensii KC4]
          Length = 223

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 91/193 (47%), Positives = 135/193 (69%), Gaps = 4/193 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +LI++T F R +IV S+LR+ +G    PPN V++ LALF+T ++M+P  +R  +  I+
Sbjct: 34  PAILILMTSFTRIVIVLSLLRSALGTHQAPPNQVLVGLALFLTVFIMAPVYERINQEAIR 93

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P + NQIT   A  R   P   FM    REKDL+LF+++AH           + +  R++
Sbjct: 94  PYLANQITRQEAQVRGLRPLKEFMLRQVREKDLALFVNLAHLPQP----VNKEELPLRVI 149

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           IP+F+ISEL+ +F +GFL+ LPFL+IDM+VA+++M+MGM MLPP  ISLPFK++ FVL+D
Sbjct: 150 IPAFLISELKTAFAMGFLLYLPFLVIDMVVASVLMSMGMFMLPPVMISLPFKLLLFVLVD 209

Query: 233 GWSLLVENLVKSF 245
           GW L+V++LV+SF
Sbjct: 210 GWYLVVKSLVESF 222


>gi|262166224|ref|ZP_06033961.1| flagellar biosynthesis protein FliP [Vibrio mimicus VM223]
 gi|262025940|gb|EEY44608.1| flagellar biosynthesis protein FliP [Vibrio mimicus VM223]
          Length = 299

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 94/214 (43%), Positives = 141/214 (65%), Gaps = 8/214 (3%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D SI+  I+    + T+L   P ++I++T F R ++V SILR  MG+   P N VII +A
Sbjct: 92  DYSINLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 148

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           LF+TF++M+P  ++  E  +QP +N QI+   A     EP   FM   TR KDL  F++M
Sbjct: 149 LFLTFFIMAPVFNQINEQAVQPYLNEQISARQAFDLAQEPMKAFMLKQTRVKDLETFVEM 208

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           + S      +T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM
Sbjct: 209 SGS-----QVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 263

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 264 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297


>gi|296133033|ref|YP_003640280.1| flagellar biosynthetic protein FliP [Thermincola sp. JR]
 gi|296031611|gb|ADG82379.1| flagellar biosynthetic protein FliP [Thermincola potens JR]
          Length = 262

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 91/199 (45%), Positives = 142/199 (71%), Gaps = 4/199 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           TILS+AP +LIM T F R ++V S +R+ +   + PPN VII LALF+TF++M+PT  + 
Sbjct: 67  TILSLAPAILIMTTAFTRVVVVLSFVRSALSTHTTPPNQVIIGLALFLTFFIMAPTWSQV 126

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
            +  +QP ++ ++++  A+++   P   FM   TREKDL+LF+ MA+     T    +  
Sbjct: 127 NKDALQPYLSGKLSQEQALKKAVTPVRDFMFKQTREKDLALFVKMANIKRPRT----HAD 182

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
           +   +LIP+F ISEL+ +F+IGF+I +PF++IDM++A+ +M+MGM+MLPP  ISLPFK++
Sbjct: 183 VPTYVLIPAFTISELKTAFQIGFMIYIPFIVIDMVIASSLMSMGMIMLPPMMISLPFKLL 242

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FVL+DGW+L+V +L+ SF
Sbjct: 243 LFVLVDGWNLIVRSLIMSF 261


>gi|33601555|ref|NP_889115.1| flagellar biosynthesis protein FliP [Bordetella bronchiseptica
           RB50]
 gi|33575991|emb|CAE33071.1| flagellar biosynthetic protein FliP [Bordetella bronchiseptica
           RB50]
          Length = 263

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 101/234 (43%), Positives = 146/234 (62%), Gaps = 6/234 (2%)

Query: 14  PELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
           P    A+++L  +   P      T+ +  +T  + T LS  P  L+M+T F R IIV  +
Sbjct: 32  PSGALAQATLPALTATPGPNGSETYSLSMQTLLLMTSLSFLPAALLMMTGFTRIIIVLGL 91

Query: 72  LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
           LR+ MG    PPN V+I LALF+TFY MSP  D+      QPL    I   TA++R   P
Sbjct: 92  LRSAMGTAMSPPNHVLIGLALFLTFYTMSPVFDKIYTDAYQPLAAGSIPFETAVERAGSP 151

Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
              FM + TRE DL+LF ++A+       +     +  RILIP+F+ SEL+ +F+IGF I
Sbjct: 152 LHNFMLHQTRENDLTLFANLANLP----AMEDPSQVPMRILIPAFITSELKTAFQIGFTI 207

Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            +PFLIID++VA+++MA+GMMM+PP +++LPFK++ FVL DGW LL+ +L +SF
Sbjct: 208 FIPFLIIDLVVASVLMALGMMMVPPVTVALPFKLMLFVLADGWHLLLGSLAQSF 261


>gi|188534130|ref|YP_001907927.1| flagellar biosynthesis protein FliP [Erwinia tasmaniensis Et1/99]
 gi|188029172|emb|CAO97044.1| Flagellar biosynthesis protein [Erwinia tasmaniensis Et1/99]
          Length = 245

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 92/206 (44%), Positives = 141/206 (68%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T    T L+  P +L+M+T F R IIVF +LR  +G  S PPN V++ L+LF+TF++M
Sbjct: 42  VQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLSLFLTFFIM 101

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P  D+      QP   ++I+   AI + A+P   FM   TRE DL+LF  +A+++    
Sbjct: 102 GPVFDKIYTDAYQPFSEDKISMQEAIDKGAQPLREFMLRQTREADLALFARLANTAP--- 158

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            I   + +  RIL+P+++ SEL+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP +I
Sbjct: 159 -IAGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATI 217

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           +LPFK++ FVL+DGW LLV +L +SF
Sbjct: 218 ALPFKLMLFVLVDGWQLLVGSLAQSF 243


>gi|260767696|ref|ZP_05876631.1| flagellar biosynthesis protein FliP [Vibrio furnissii CIP 102972]
 gi|260617205|gb|EEX42389.1| flagellar biosynthesis protein FliP [Vibrio furnissii CIP 102972]
 gi|315179472|gb|ADT86386.1| flagellar biosynthetic protein FliP [Vibrio furnissii NCTC 11218]
          Length = 299

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 90/206 (43%), Positives = 139/206 (67%), Gaps = 5/206 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   + T+L   P ++I++T F R ++V SILR  MG+   P N VI+ +A+F+TF++M
Sbjct: 97  LQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIVGIAIFLTFFIM 156

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP L++  +  IQP +N QI+   A  R  EP   FM   TR KDL  F+++A +  +N 
Sbjct: 157 SPVLNKINDQAIQPYLNEQISARQAFDRAQEPMKAFMLKQTRVKDLETFVNIAGAEVQNP 216

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           +      +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGMMML P  +
Sbjct: 217 E-----DVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGMMMLSPMIV 271

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 272 SLPFKLMLFVLVDGWNLILSTLAGSF 297


>gi|33596149|ref|NP_883792.1| flagellar biosynthesis protein FliP [Bordetella parapertussis
           12822]
 gi|33573152|emb|CAE36802.1| flagellar biosynthetic protein FliP [Bordetella parapertussis]
          Length = 266

 Score =  190 bits (482), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 101/234 (43%), Positives = 146/234 (62%), Gaps = 6/234 (2%)

Query: 14  PELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
           P    A+++L  +   P      T+ +  +T  + T LS  P  L+M+T F R IIV  +
Sbjct: 35  PSGALAQATLPALTATPGPNGSETYSLSMQTLLLMTSLSFLPAALLMMTGFTRIIIVLGL 94

Query: 72  LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
           LR+ MG    PPN V+I LALF+TFY MSP  D+      QPL    I   TA++R   P
Sbjct: 95  LRSAMGTAMSPPNHVLIGLALFLTFYTMSPVFDKIYTDAYQPLAAGSIPFETAVERAGSP 154

Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
              FM + TRE DL+LF ++A+       +     +  RILIP+F+ SEL+ +F+IGF I
Sbjct: 155 LHNFMLHQTRENDLTLFANLANLP----AMEDPSQVPMRILIPAFITSELKTAFQIGFTI 210

Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            +PFLIID++VA+++MA+GMMM+PP +++LPFK++ FVL DGW LL+ +L +SF
Sbjct: 211 FIPFLIIDLVVASVLMALGMMMVPPVTVALPFKLMLFVLADGWHLLLGSLAQSF 264


>gi|331269328|ref|YP_004395820.1| flagellar biosynthetic protein FliP [Clostridium botulinum
           BKT015925]
 gi|329125878|gb|AEB75823.1| flagellar biosynthetic protein FliP [Clostridium botulinum
           BKT015925]
          Length = 257

 Score =  190 bits (482), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 91/206 (44%), Positives = 143/206 (69%), Gaps = 3/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   + T+LS+ P  L+M+T F R IIV   +R  +G    PPN ++I +ALF+T ++M
Sbjct: 53  IKLLVMLTVLSLLPSFLVMMTSFTRIIIVLGFMRNALGTQQAPPNQILIGIALFLTIFIM 112

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +PT     +  I+P + N+IT   A+   ++P   FM   TR+KDL LF+D++ +    T
Sbjct: 113 APTYKTINKEAIKPFLENKITGQQAMDNASKPMREFMLKQTRDKDLELFLDVSKTDK--T 170

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            ITK D++   ++IPSF+ISEL+ +F+IGFL+ +PFLIID++VA+++M+MGM MLPP  I
Sbjct: 171 KITK-DNVPMYVVIPSFIISELKTAFKIGFLLYIPFLIIDIVVASVLMSMGMFMLPPVMI 229

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FV++DGW LLV++L+  +
Sbjct: 230 SLPFKILLFVMVDGWYLLVKSLIMGY 255


>gi|301165896|emb|CBW25469.1| flagellar biosynthesis protein [Bacteriovorax marinus SJ]
          Length = 252

 Score =  190 bits (482), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 99/231 (42%), Positives = 152/231 (65%), Gaps = 7/231 (3%)

Query: 18  FAKSSLHDVMNIPADLSISTWIVRTFGI---FTILSIAPILLIMVTCFPRFIIVFSILRT 74
           FA+SS  ++  +  +    T +V T  +   FT+L++AP +LI+ TCF R I+V S +R 
Sbjct: 25  FAQSSGVNLPGMAINFGNGTNLVDTIQVLVLFTVLTMAPAILILCTCFTRIIVVLSFMRQ 84

Query: 75  GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134
            +G  S+PPN V+I  ALF++ +VM PT ++  +  I P +  +IT T A+ R+      
Sbjct: 85  AIGTQSMPPNQVLIGFALFLSIFVMQPTGEQIYKNAITPYVEKKITTTVALDRIEFSLRG 144

Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
           FM    R+ D+ LF D+   + R    T ND +    LIP+F+ISEL+ +F+IGFL+ +P
Sbjct: 145 FMTKQVRKADIGLFYDV---TGRKAPNTIND-VPIHFLIPAFIISELKTAFQIGFLLYIP 200

Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           FLI+DM+VA+++MAMGMMMLPP  +SLPFK++ FVL+DGW L+  ++++SF
Sbjct: 201 FLILDMVVASVLMAMGMMMLPPVVVSLPFKLLLFVLVDGWQLVTGSILRSF 251


>gi|315498438|ref|YP_004087242.1| flagellar biosynthetic protein flip [Asticcacaulis excentricus CB
           48]
 gi|315416450|gb|ADU13091.1| flagellar biosynthetic protein FliP [Asticcacaulis excentricus CB
           48]
          Length = 268

 Score =  190 bits (482), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 92/212 (43%), Positives = 145/212 (68%), Gaps = 4/212 (1%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           +++  +V+  G+ T+LS+AP ++IM T F R ++V S+LRT +G+   PPN V+ISLA+F
Sbjct: 53  TLTARVVQMLGLLTVLSLAPSIVIMTTSFIRIVVVLSLLRTALGLQQSPPNAVLISLAMF 112

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           ++  VM+PT   + + GI+PLM+ ++    A    +EP   FM +     DL+LF+ ++ 
Sbjct: 113 LSAVVMAPTYQAAYDAGIRPLMDQEMEMPQAFDAASEPVKTFMLSQVDAGDLNLFIRLSK 172

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
                     N  +   ++ P+FMISEL+ +F IGFL+ +PFL+ID++VA+++M+MGMMM
Sbjct: 173 VEKPK----DNMDLPITVITPAFMISELKTAFLIGFLLFIPFLVIDLVVASVLMSMGMMM 228

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LPP  +SLPFK+IFFVL+DGW L+  +LV+SF
Sbjct: 229 LPPVVVSLPFKLIFFVLVDGWRLVCGSLVESF 260


>gi|323490154|ref|ZP_08095374.1| flagellar biosynthesis protein FliP [Planococcus donghaensis
           MPA1U2]
 gi|323396202|gb|EGA89028.1| flagellar biosynthesis protein FliP [Planococcus donghaensis
           MPA1U2]
          Length = 229

 Score =  190 bits (482), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 96/197 (48%), Positives = 137/197 (69%), Gaps = 10/197 (5%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +LIM+T F R IIV S +RTG+G  S+PPN V++ LALF+TF++MSP +    +  +
Sbjct: 40  APGILIMMTSFTRIIIVLSFVRTGLGTQSMPPNQVLVGLALFLTFFIMSPIVVEMNDTAL 99

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY-- 169
           QP ++ ++ +  A+     P   FM  NTREKDL+LF        +  ++ K D IE   
Sbjct: 100 QPYLDGEMEQQEALDTAVVPLKEFMAKNTREKDLALF-------FKYAELEKPDSIEEIP 152

Query: 170 -RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
              L+P+F ISE++ +F+IGF+I +PFLIIDM+VA+ +MAMGMMMLPP  ISLPFK++ F
Sbjct: 153 LTSLVPAFAISEMKTAFQIGFVIFIPFLIIDMVVASTLMAMGMMMLPPVMISLPFKILLF 212

Query: 229 VLIDGWSLLVENLVKSF 245
           VL+DGW L++E+L+ SF
Sbjct: 213 VLVDGWYLIIESLLVSF 229


>gi|319649551|ref|ZP_08003707.1| flagellar biosynthesis protein P [Bacillus sp. 2_A_57_CT2]
 gi|317398713|gb|EFV79395.1| flagellar biosynthesis protein P [Bacillus sp. 2_A_57_CT2]
          Length = 221

 Score =  190 bits (482), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 90/194 (46%), Positives = 139/194 (71%), Gaps = 4/194 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +LI++TCF R IIV S +RT +    +PPN V+I L+LF+TF++M+PT+    E  +
Sbjct: 32  APSILILMTCFTRIIIVLSFVRTALATQQMPPNQVLIGLSLFLTFFIMAPTMQEVNEQAL 91

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
            PL N +I    A ++ + PF  FM  +TR+KDL+LF+  + +   ++     + I    
Sbjct: 92  TPLFNEEINLEEAYEKASIPFKEFMSAHTRQKDLALFLQYSGAEAPSSI----EDIPLTS 147

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           L+P+F ISE++ +F+IGF+I +PFL+IDM+VA+++M+MGMMMLPP  ISLPFK++ FVL+
Sbjct: 148 LVPAFAISEIKTAFQIGFMIFIPFLVIDMVVASVLMSMGMMMLPPVMISLPFKILLFVLV 207

Query: 232 DGWSLLVENLVKSF 245
           DGW L+V++L++SF
Sbjct: 208 DGWYLVVKSLLQSF 221


>gi|284159406|ref|YP_440590.3| flagellar biosynthesis protein FliP [Burkholderia thailandensis
           E264]
 gi|83653869|gb|ABC37932.1| flagellar biosynthetic protein [Burkholderia thailandensis E264]
          Length = 276

 Score =  190 bits (482), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 92/206 (44%), Positives = 138/206 (66%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T  + T+LS  P +L+M+T F R IIV S+LR  +G  S PPN V++ LALF+T +VM
Sbjct: 74  VQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQAIGTASTPPNQVLVGLALFLTLFVM 133

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP LD++     +P     +    A+QR   PF  FM   TRE DL+LF  ++ ++    
Sbjct: 134 SPVLDKAYTDAYKPFSEGTLQMDQAVQRGTAPFKTFMLKQTRETDLALFAKISKAA---- 189

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +   + +   +L+P+F+ SEL+  F+IGF I +PFLIIDM+VA+++M+MGMMM+ P ++
Sbjct: 190 PMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATV 249

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 250 SLPFKLMLFVLVDGWQLLIGSLAQSF 275


>gi|300854220|ref|YP_003779204.1| flagellar biosynthesis protein FliP [Clostridium ljungdahlii DSM
           13528]
 gi|300434335|gb|ADK14102.1| flagellar biosynthesis protein FliP [Clostridium ljungdahlii DSM
           13528]
          Length = 266

 Score =  190 bits (482), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 92/199 (46%), Positives = 139/199 (69%), Gaps = 2/199 (1%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T++++ P  ++M+T F R I+VF  LR+ MG    PPN ++I LALFMT ++M P   + 
Sbjct: 69  TVITLLPSFVMMMTSFVRIIVVFGFLRSAMGTQQSPPNSILIGLALFMTVFIMYPVYSKM 128

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
               I+P M N+IT+  AI   A+P   FM   T +KDL LF+D A  +++ T   +N  
Sbjct: 129 NTNAIEPYMQNKITQQQAIDEGAKPIRSFMLKQTYKKDLQLFIDQAKLNYKVTADGQNAP 188

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
           +   +++P++MISEL+ +FEIGFLI +PF++IDM+V++++MAMGM MLPPT ISL FK++
Sbjct: 189 L--YVVVPAYMISELKTAFEIGFLIYIPFMVIDMVVSSVLMAMGMFMLPPTMISLAFKLL 246

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FV++DGW LLV++L+ SF
Sbjct: 247 LFVMVDGWYLLVKSLIVSF 265


>gi|148359333|ref|YP_001250540.1| flagellar biosynthetic protein FliP [Legionella pneumophila str.
           Corby]
 gi|148281106|gb|ABQ55194.1| flagellar biosynthetic protein FliP [Legionella pneumophila str.
           Corby]
          Length = 249

 Score =  190 bits (482), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 95/199 (47%), Positives = 138/199 (69%), Gaps = 5/199 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T+L++ P LL+ +T F R IIV SILR  +GM   P N ++I +ALFMT++VMSP  ++ 
Sbjct: 53  TLLTVLPGLLMAMTSFTRIIIVLSILRQAIGMAQTPTNQILIGIALFMTYFVMSPVFNKI 112

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
            E  IQP MN +I  + A+    +P   FM N TR+ DLSLF   AH+  ++ D      
Sbjct: 113 NETAIQPYMNERIDFSLALSNAQKPLRQFMLNQTRKNDLSLFEKFAHNVPKSLD-----E 167

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
           I   +LIP+F+ SEL+ +F+IGF++ LPFLIID++V++++MAMGMMML P  ISLPFK++
Sbjct: 168 IPMSVLIPAFITSELKTAFQIGFILFLPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIM 227

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FV++DGW+L++ +L  SF
Sbjct: 228 LFVMVDGWTLVLGSLASSF 246


>gi|52842016|ref|YP_095815.1| flagellar biosynthesis protein FliP [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|296107380|ref|YP_003619080.1| flagellar biosynthetic protein FliP [Legionella pneumophila 2300/99
           Alcoy]
 gi|52629127|gb|AAU27868.1| flagellar biosynthetic protein FliP [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|295649281|gb|ADG25128.1| flagellar biosynthetic protein FliP [Legionella pneumophila 2300/99
           Alcoy]
 gi|307610489|emb|CBX00061.1| flagellar biosynthetic protein FliP [Legionella pneumophila 130b]
          Length = 249

 Score =  190 bits (482), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 95/199 (47%), Positives = 138/199 (69%), Gaps = 5/199 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T+L++ P LL+ +T F R IIV SILR  +GM   P N ++I +ALFMT++VMSP  ++ 
Sbjct: 53  TLLTVLPGLLMAMTSFTRIIIVLSILRQAIGMAQTPTNQILIGIALFMTYFVMSPVFNKI 112

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
            E  IQP MN +I  + A+    +P   FM N TR+ DLSLF   AH+  ++ D      
Sbjct: 113 NETAIQPYMNERIDFSLALSNAQKPLRQFMLNQTRKNDLSLFEKFAHNVPKSLD-----E 167

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
           I   +LIP+F+ SEL+ +F+IGF++ LPFLIID++V++++MAMGMMML P  ISLPFK++
Sbjct: 168 IPMSVLIPAFITSELKTAFQIGFILFLPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIM 227

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FV++DGW+L++ +L  SF
Sbjct: 228 LFVMVDGWTLVLGSLASSF 246


>gi|53717669|ref|YP_106655.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei
           K96243]
 gi|52208083|emb|CAH34013.1| flagellar biosynthetic protein [Burkholderia pseudomallei K96243]
          Length = 253

 Score =  190 bits (482), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 92/206 (44%), Positives = 138/206 (66%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T  + T+LS  P +L+M+T F R IIV S+LR  +G  S PP+ V++ LALF+T +VM
Sbjct: 51  VQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQAIGTASTPPSQVLVGLALFLTLFVM 110

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP LDR+     +P     +    A+QR   PF  FM   TRE DL+LF  ++ ++    
Sbjct: 111 SPVLDRAYNDAYKPFSEGTLQMDQAVQRGTAPFKAFMLKQTRETDLALFAKISKAAP--- 167

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +   + +   +L+P+F+ SEL+  F+IGF I +PFLIIDM+VA+++M+MGMMM+ P ++
Sbjct: 168 -MQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATV 226

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 227 SLPFKLMLFVLVDGWQLLIGSLAQSF 252


>gi|296186695|ref|ZP_06855097.1| flagellar biosynthetic protein FliP [Clostridium carboxidivorans
           P7]
 gi|296048732|gb|EFG88164.1| flagellar biosynthetic protein FliP [Clostridium carboxidivorans
           P7]
          Length = 258

 Score =  190 bits (482), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 94/199 (47%), Positives = 138/199 (69%), Gaps = 4/199 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           TIL+I P  ++M+T F R I+VF  LR  MG    PPN ++I LALF+T ++M P   + 
Sbjct: 63  TILTILPSFIMMMTSFVRIIVVFGFLRGAMGTQQSPPNTILIGLALFLTVFIMQPVYSKV 122

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
               IQP M N+IT+  AI   A+P   FM   T +KD  LF+D A  +++   ITK++ 
Sbjct: 123 NTNAIQPYMQNKITQEQAIDEGAKPLRQFMLKYTYKKDFQLFIDTAKVNYK---ITKDNA 179

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
             Y +++P+FMISEL+ +F IGF++ +PF+IID++VA+++M+MGM MLPP  +SLPFK++
Sbjct: 180 PLY-VVVPAFMISELKTAFMIGFMLYIPFMIIDLVVASVLMSMGMFMLPPAMVSLPFKLL 238

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FV++DGW LLV++LV SF
Sbjct: 239 LFVMVDGWYLLVKSLVSSF 257


>gi|258621114|ref|ZP_05716148.1| Flagellar biosynthetic protein fliP [Vibrio mimicus VM573]
 gi|258626187|ref|ZP_05721035.1| Flagellar biosynthetic protein fliP [Vibrio mimicus VM603]
 gi|262170890|ref|ZP_06038568.1| flagellar biosynthesis protein FliP [Vibrio mimicus MB-451]
 gi|258581542|gb|EEW06443.1| Flagellar biosynthetic protein fliP [Vibrio mimicus VM603]
 gi|258586502|gb|EEW11217.1| Flagellar biosynthetic protein fliP [Vibrio mimicus VM573]
 gi|261891966|gb|EEY37952.1| flagellar biosynthesis protein FliP [Vibrio mimicus MB-451]
          Length = 299

 Score =  190 bits (482), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 94/214 (43%), Positives = 141/214 (65%), Gaps = 8/214 (3%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D SI+  I+    + T+L   P ++I++T F R ++V SILR  MG+   P N VII +A
Sbjct: 92  DYSINLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 148

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           LF+TF++M+P  ++  E  +QP +N QI+   A     EP   FM   TR KDL  F++M
Sbjct: 149 LFLTFFIMAPVFNQINEQAVQPYLNEQISARQAFDLAQEPMKAFMLKQTRIKDLETFVEM 208

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           + S      +T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM
Sbjct: 209 SGS-----QVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 263

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 264 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297


>gi|209522296|ref|ZP_03270923.1| flagellar biosynthetic protein FliP [Burkholderia sp. H160]
 gi|209497272|gb|EDZ97500.1| flagellar biosynthetic protein FliP [Burkholderia sp. H160]
          Length = 273

 Score =  190 bits (482), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 92/207 (44%), Positives = 139/207 (67%), Gaps = 4/207 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T  + T+LS  P +++M+T F R +IV S+LR  +G  + PPN V++ LALF+T +VM
Sbjct: 71  VQTMLLLTMLSFLPAMVLMMTSFTRIVIVLSLLRQALGTTTTPPNQVLVGLALFLTLFVM 130

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP LD++   G +P     +    A+ R   PF  FM   TRE DL+LF  ++H++    
Sbjct: 131 SPVLDKAYNEGYKPFSEGTMPMDQAVSRGVAPFKTFMLRQTRESDLALFARISHAA---- 186

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +   + +   +L+PSF+ SEL+  F IGF I +PFLIIDM+VA+++M+MGMMM+ P +I
Sbjct: 187 PMQGPEDVPLSLLVPSFVTSELKTGFTIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATI 246

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
           SLPFK++ FVL+DGW LL+ +L +SF+
Sbjct: 247 SLPFKLMLFVLVDGWQLLLGSLAQSFV 273


>gi|242310594|ref|ZP_04809749.1| flagellar biosynthesis protein FliP [Helicobacter pullorum MIT
           98-5489]
 gi|239522992|gb|EEQ62858.1| flagellar biosynthesis protein FliP [Helicobacter pullorum MIT
           98-5489]
          Length = 251

 Score =  190 bits (482), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 98/219 (44%), Positives = 146/219 (66%), Gaps = 9/219 (4%)

Query: 28  NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87
           N P DL     I+    + T+L +AP L++M T F R +IVFS LRT MG    PP  ++
Sbjct: 40  NEPGDL---VAILNIVIVLTLLVLAPSLVLMATSFARILIVFSFLRTAMGTQQSPPTQLL 96

Query: 88  ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147
           +S AL +T ++M P +    E G++P +  +I+   A  R ++PF  FM  NTR KDL+L
Sbjct: 97  VSFALILTMFIMEPVVKEGYEKGVKPYVAKEISYQEAFVRASQPFKDFMIRNTRPKDLAL 156

Query: 148 FMDMAHSSHRNTDITKN-DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
           F  +     R  +  +N   + + I +P+F+ISE++ +F+IGFL+ LPFL+IDM++++I+
Sbjct: 157 FYRI-----RGMENPQNAQEVPFTIALPAFIISEMKTAFQIGFLLYLPFLVIDMVISSIL 211

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MAMGMMMLPPT ISLPFK++ F+L+DG++LL  NLV+SF
Sbjct: 212 MAMGMMMLPPTMISLPFKILIFILVDGFNLLTMNLVESF 250


>gi|330445376|ref|ZP_08309028.1| flagellar biosynthetic protein FliP [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489567|dbj|GAA03525.1| flagellar biosynthetic protein FliP [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 282

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 95/214 (44%), Positives = 143/214 (66%), Gaps = 8/214 (3%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D S++  I+    + T L   P ++I++T F R ++V SILR  MG+   P N VII +A
Sbjct: 75  DYSVTLQIL---ALMTALGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 131

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           LF+TF+VMSP +D+     +QP +N QIT   A+++  +P   FM   TR KDL  F++M
Sbjct: 132 LFLTFFVMSPVIDKINTEAVQPYINEQITAKQALEKAEDPMRQFMLKQTRVKDLETFVNM 191

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           + S+  +       ++   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+I+MAMGM
Sbjct: 192 SGSTADDPQ-----NVPLTVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASILMAMGM 246

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 247 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 280


>gi|159045807|ref|YP_001534601.1| flagellar biosynthesis protein FliP [Dinoroseobacter shibae DFL 12]
 gi|157913567|gb|ABV95000.1| flagellar biosynthesis protein FliP [Dinoroseobacter shibae DFL 12]
          Length = 242

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 97/221 (43%), Positives = 145/221 (65%), Gaps = 1/221 (0%)

Query: 26  VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
            +N+  + S+S    +   + T+LSIAP L IM+TCFP  + V SILR G+G+   PPN+
Sbjct: 23  AINLGDETSLSARTFQIIALITVLSIAPGLAIMITCFPFMVTVLSILRQGIGLQQSPPNM 82

Query: 86  VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145
           +IISLALF+T++VM P    +   GIQP+++  +      +   EPF  FM+  T  + L
Sbjct: 83  LIISLALFLTYFVMDPVFREAWSRGIQPMVDGAVDMEEGFRAALEPFIRFMQARTDPETL 142

Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
           +   ++   +       + D     +LIPSF++SE+ ++F+IGFLI LPFLIID+IVA I
Sbjct: 143 ARLGNLRMETAGVAPF-ELDAPPISVLIPSFLLSEIEKAFQIGFLIFLPFLIIDLIVAAI 201

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +M+MGMMM+PP  +SLPFK+ FFV+ DGW+LL E L++S++
Sbjct: 202 LMSMGMMMVPPAIVSLPFKLAFFVVADGWTLLSEALLRSYM 242


>gi|295399824|ref|ZP_06809805.1| flagellar biosynthetic protein FliP [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312111664|ref|YP_003989980.1| flagellar biosynthetic protein FliP [Geobacillus sp. Y4.1MC1]
 gi|294978227|gb|EFG53824.1| flagellar biosynthetic protein FliP [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311216765|gb|ADP75369.1| flagellar biosynthetic protein FliP [Geobacillus sp. Y4.1MC1]
          Length = 222

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 92/195 (47%), Positives = 137/195 (70%), Gaps = 4/195 (2%)

Query: 51  IAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMG 110
           IAP +LIM+TCF R IIV S +RT +G   +PPN V+I LA+F+TF++M+PT     +  
Sbjct: 31  IAPGILIMMTCFTRIIIVLSFVRTSLGTQQMPPNQVLIGLAMFLTFFIMAPTFKEINDQA 90

Query: 111 IQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYR 170
           +QPL + +I    A +R + P   FM  +TR+KDL+LF+  + +    T       I   
Sbjct: 91  LQPLFSEKINLEQAYERASVPIKEFMSKHTRQKDLALFLSYSGAEKPKT----VQDIPLS 146

Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230
            L+P+F ISE++ +F++G +I +PFL+IDMIVA+++M+MGMMMLPP  ISLPFK++ FVL
Sbjct: 147 TLVPAFAISEIKTAFQMGVMIFIPFLVIDMIVASVLMSMGMMMLPPVMISLPFKILLFVL 206

Query: 231 IDGWSLLVENLVKSF 245
           +DGW L+V++L++SF
Sbjct: 207 VDGWYLVVKSLLESF 221


>gi|323703181|ref|ZP_08114834.1| flagellar biosynthetic protein FliP [Desulfotomaculum nigrificans
           DSM 574]
 gi|323531840|gb|EGB21726.1| flagellar biosynthetic protein FliP [Desulfotomaculum nigrificans
           DSM 574]
          Length = 270

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 91/200 (45%), Positives = 137/200 (68%), Gaps = 6/200 (3%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           ++L++ P  LIM+T F R ++V S LR+ +G    PPN V++ LALF+T ++MSP     
Sbjct: 75  SLLAMVPAFLIMLTSFTRIVVVLSFLRSALGTQQTPPNQVLVGLALFLTIFIMSPVYKDM 134

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-D 165
            +  IQP + NQ+T   A  +  +P   FM   TREKDL LF+ +A       D  KN +
Sbjct: 135 NKNAIQPYLANQLTYEQAADKAIQPLKAFMARQTREKDLGLFISVAK-----MDKPKNIN 189

Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225
            +   +L+P+F+ISEL+ +F+IGF+I +PFL+IDM+VA+ +M+MGM MLPP  +SLPFK+
Sbjct: 190 EVPMSVLVPAFVISELKTAFQIGFIIFVPFLVIDMVVASTLMSMGMFMLPPVMVSLPFKL 249

Query: 226 IFFVLIDGWSLLVENLVKSF 245
           + FV++DGW L+V++LV+SF
Sbjct: 250 LLFVMVDGWYLVVKSLVESF 269


>gi|23099026|ref|NP_692492.1| flagellar biosynthesis protein FliP [Oceanobacillus iheyensis
           HTE831]
 gi|22777254|dbj|BAC13527.1| flagellar protein required for flagellar formation [Oceanobacillus
           iheyensis HTE831]
          Length = 221

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 99/216 (45%), Positives = 143/216 (66%), Gaps = 7/216 (3%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P ++S S   V+   + TI S+AP +LI++T F R IIV S +RT +    +PPN V+I 
Sbjct: 13  PTNISTS---VKLLLLLTIFSLAPGILILMTSFTRIIIVLSFVRTSLATQQMPPNQVLIG 69

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           +ALFM+F++M+PT     E G+ PL N +IT   A +  + P   FM  +TR+KDL LF+
Sbjct: 70  IALFMSFFIMAPTFTEVYEEGLGPLFNEEITLDEAYENASIPLKEFMAQHTRQKDLELFL 129

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
           +   +    T     + I    L+P+F ISEL+ +F++GFLI +PFLIIDM VA+I+M+M
Sbjct: 130 NYTQADPPET----IEDIPLTTLVPAFAISELKTAFQMGFLIFIPFLIIDMAVASILMSM 185

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMMLPP  ISLPFK++ FVL+DGW L+ ++L+  F
Sbjct: 186 GMMMLPPVMISLPFKILLFVLVDGWYLITQSLLGGF 221


>gi|291326353|ref|ZP_06124191.2| flagellar biosynthetic protein FliP [Providencia rettgeri DSM 1131]
 gi|291314687|gb|EFE55140.1| flagellar biosynthetic protein FliP [Providencia rettgeri DSM 1131]
          Length = 215

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 91/193 (47%), Positives = 134/193 (69%), Gaps = 4/193 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P LL+M+T F R IIV  +LR  +G  S PPN V++ LALF+TF+VMSP  D+      Q
Sbjct: 25  PALLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFVMSPVADQVYREAYQ 84

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P   ++I+  TA+++   P   FM   TRE DL+LF  +A    +  +I +   +  RIL
Sbjct: 85  PFSEDKISLETALEKGTAPLRTFMLGQTRESDLALFARIA----KVGEIQEAKDVPLRIL 140

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           +P+F+ SEL+ +F+IGF I +PFLIID++VA+++MA+GMMM+PP ++SLPFK++ FVL+D
Sbjct: 141 VPAFITSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVD 200

Query: 233 GWSLLVENLVKSF 245
           GW LL+ +L +SF
Sbjct: 201 GWQLLLGSLSQSF 213


>gi|300722650|ref|YP_003711940.1| flagellar biosynthesis protein [Xenorhabdus nematophila ATCC 19061]
 gi|297629157|emb|CBJ89753.1| flagellar biosynthesis [Xenorhabdus nematophila ATCC 19061]
          Length = 272

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 96/229 (41%), Positives = 145/229 (63%), Gaps = 6/229 (2%)

Query: 19  AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
           A + L  +++ P      +W   V+T    T L   P  L+M+T F R IIV  +LR  +
Sbjct: 46  AAAELPGIISQPLPNGGQSWSLPVQTLIFITALGFIPAALLMMTSFTRIIIVLGLLRNAL 105

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G  S PPN V++ LALFMTF++M+P  D+  +    P   ++IT   A+ + ++P   FM
Sbjct: 106 GTPSAPPNQVMLGLALFMTFFIMAPVFDKVYQDAYLPYNEDKITLEAALDKGSKPLRQFM 165

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
              TRE DL+LF  +A      T     D +  R+L+P+F+ SEL+ +F+IGF + +PFL
Sbjct: 166 LRQTRENDLALFARLADQEAFET----ADSVPLRVLVPAFITSELKTAFQIGFTLFIPFL 221

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 222 IIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 270


>gi|15642122|ref|NP_231754.1| flagellar biosynthesis protein FliP [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121727223|ref|ZP_01680390.1| flagellar biosynthetic protein FliP [Vibrio cholerae V52]
 gi|147674933|ref|YP_001217644.1| flagellar biosynthesis protein FliP [Vibrio cholerae O395]
 gi|153818972|ref|ZP_01971639.1| flagellar biosynthetic protein FliP [Vibrio cholerae NCTC 8457]
 gi|153822891|ref|ZP_01975558.1| flagellar biosynthetic protein FliP [Vibrio cholerae B33]
 gi|227082248|ref|YP_002810799.1| flagellar biosynthetic protein FliP [Vibrio cholerae M66-2]
 gi|229507792|ref|ZP_04397297.1| flagellar biosynthesis protein FliP [Vibrio cholerae BX 330286]
 gi|229511971|ref|ZP_04401450.1| flagellar biosynthesis protein FliP [Vibrio cholerae B33]
 gi|229513774|ref|ZP_04403236.1| flagellar biosynthesis protein FliP [Vibrio cholerae TMA 21]
 gi|229519107|ref|ZP_04408550.1| flagellar biosynthesis protein FliP [Vibrio cholerae RC9]
 gi|229522076|ref|ZP_04411493.1| flagellar biosynthesis protein FliP [Vibrio cholerae TM 11079-80]
 gi|229524125|ref|ZP_04413530.1| flagellar biosynthesis protein FliP [Vibrio cholerae bv. albensis
           VL426]
 gi|229607337|ref|YP_002877985.1| flagellar biosynthesis protein FliP [Vibrio cholerae MJ-1236]
 gi|254226359|ref|ZP_04919948.1| flagellar biosynthetic protein FliP [Vibrio cholerae V51]
 gi|254291359|ref|ZP_04962152.1| flagellar biosynthetic protein FliP [Vibrio cholerae AM-19226]
 gi|254849208|ref|ZP_05238558.1| flagellar biosynthesis protein FliP [Vibrio cholerae MO10]
 gi|255745138|ref|ZP_05419087.1| flagellar biosynthesis protein FliP [Vibrio cholera CIRS 101]
 gi|262153472|ref|ZP_06028602.1| flagellar biosynthesis protein FliP [Vibrio cholerae INDRE 91/1]
 gi|262167482|ref|ZP_06035188.1| flagellar biosynthesis protein FliP [Vibrio cholerae RC27]
 gi|262191372|ref|ZP_06049562.1| flagellar biosynthesis protein FliP [Vibrio cholerae CT 5369-93]
 gi|297582021|ref|ZP_06943940.1| flagellar biosynthetic protein FliP [Vibrio cholerae RC385]
 gi|298497855|ref|ZP_07007662.1| flagellar biosynthetic protein FliP [Vibrio cholerae MAK 757]
 gi|9656673|gb|AAF95268.1| flagellar biosynthetic protein FliP [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121630468|gb|EAX62861.1| flagellar biosynthetic protein FliP [Vibrio cholerae V52]
 gi|125621109|gb|EAZ49454.1| flagellar biosynthetic protein FliP [Vibrio cholerae V51]
 gi|126510467|gb|EAZ73061.1| flagellar biosynthetic protein FliP [Vibrio cholerae NCTC 8457]
 gi|126519587|gb|EAZ76810.1| flagellar biosynthetic protein FliP [Vibrio cholerae B33]
 gi|146316816|gb|ABQ21355.1| flagellar biosynthetic protein FliP [Vibrio cholerae O395]
 gi|150422689|gb|EDN14643.1| flagellar biosynthetic protein FliP [Vibrio cholerae AM-19226]
 gi|227010136|gb|ACP06348.1| flagellar biosynthetic protein FliP [Vibrio cholerae M66-2]
 gi|227014019|gb|ACP10229.1| flagellar biosynthetic protein FliP [Vibrio cholerae O395]
 gi|229337706|gb|EEO02723.1| flagellar biosynthesis protein FliP [Vibrio cholerae bv. albensis
           VL426]
 gi|229341001|gb|EEO06006.1| flagellar biosynthesis protein FliP [Vibrio cholerae TM 11079-80]
 gi|229343796|gb|EEO08771.1| flagellar biosynthesis protein FliP [Vibrio cholerae RC9]
 gi|229348955|gb|EEO13912.1| flagellar biosynthesis protein FliP [Vibrio cholerae TMA 21]
 gi|229351936|gb|EEO16877.1| flagellar biosynthesis protein FliP [Vibrio cholerae B33]
 gi|229355297|gb|EEO20218.1| flagellar biosynthesis protein FliP [Vibrio cholerae BX 330286]
 gi|229369992|gb|ACQ60415.1| flagellar biosynthesis protein FliP [Vibrio cholerae MJ-1236]
 gi|254844913|gb|EET23327.1| flagellar biosynthesis protein FliP [Vibrio cholerae MO10]
 gi|255736968|gb|EET92364.1| flagellar biosynthesis protein FliP [Vibrio cholera CIRS 101]
 gi|262024054|gb|EEY42749.1| flagellar biosynthesis protein FliP [Vibrio cholerae RC27]
 gi|262030709|gb|EEY49343.1| flagellar biosynthesis protein FliP [Vibrio cholerae INDRE 91/1]
 gi|262032747|gb|EEY51295.1| flagellar biosynthesis protein FliP [Vibrio cholerae CT 5369-93]
 gi|297533716|gb|EFH72558.1| flagellar biosynthetic protein FliP [Vibrio cholerae RC385]
 gi|297542188|gb|EFH78238.1| flagellar biosynthetic protein FliP [Vibrio cholerae MAK 757]
          Length = 299

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 93/214 (43%), Positives = 140/214 (65%), Gaps = 8/214 (3%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D SI+  I+    + T+L   P ++I++T F R ++V SILR  MG+   P N VII +A
Sbjct: 92  DYSINLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 148

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           LF+TF++M+P  ++  E  +QP +N QIT   A     EP   FM   TR  DL  F++M
Sbjct: 149 LFLTFFIMAPVFNQINEQAVQPYLNEQITARQAFDLAQEPLKAFMLKQTRVNDLETFVEM 208

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           + +      +T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM
Sbjct: 209 SGA-----QVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 263

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 264 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297


>gi|261344130|ref|ZP_05971774.1| flagellar biosynthetic protein FliP [Providencia rustigianii DSM
           4541]
 gi|282567722|gb|EFB73257.1| flagellar biosynthetic protein FliP [Providencia rustigianii DSM
           4541]
          Length = 247

 Score =  189 bits (481), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 90/193 (46%), Positives = 134/193 (69%), Gaps = 4/193 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +L+M+T F R IIV  +LR  +G  S PPN V++ LALF+TF+VMSP  D+      Q
Sbjct: 57  PAMLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFVMSPVADQVYREAYQ 116

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P   ++I+  TA+++   P   FM   TRE DL+LF  +A    +  +I +   +  RIL
Sbjct: 117 PFSEDKISLETALEKGTAPLRTFMLGQTRESDLALFARIA----KVGEIQEAKDVPMRIL 172

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           +P+F+ SEL+ +F+IGF I +PFLIID++VA+++MA+GMMM+PP ++SLPFK++ FVL+D
Sbjct: 173 VPAFITSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVD 232

Query: 233 GWSLLVENLVKSF 245
           GW LL+ +L +SF
Sbjct: 233 GWQLLLGSLSQSF 245


>gi|153825580|ref|ZP_01978247.1| flagellar biosynthetic protein FliP [Vibrio cholerae MZO-2]
 gi|149740731|gb|EDM54830.1| flagellar biosynthetic protein FliP [Vibrio cholerae MZO-2]
          Length = 299

 Score =  189 bits (481), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 93/214 (43%), Positives = 140/214 (65%), Gaps = 8/214 (3%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D SI+  I+    + T+L   P ++I++T F R ++V SILR  MG+   P N VII +A
Sbjct: 92  DYSINLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 148

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           LF+TF++M+P  ++  E  +QP +N QIT   A     EP   FM   TR  DL  F++M
Sbjct: 149 LFLTFFIMAPVFNQINEQAVQPYLNEQITARQAFDLAQEPLKAFMLKQTRVNDLETFVEM 208

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           + +      +T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM
Sbjct: 209 SGA-----QVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 263

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 264 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297


>gi|261209859|ref|ZP_05924160.1| flagellar biosynthesis protein FliP [Vibrio sp. RC341]
 gi|260841045|gb|EEX67570.1| flagellar biosynthesis protein FliP [Vibrio sp. RC341]
          Length = 299

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 93/214 (43%), Positives = 141/214 (65%), Gaps = 8/214 (3%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D SI+  I+    + T+L   P ++I++T F R ++V SILR  MG+   P N VII +A
Sbjct: 92  DYSINLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 148

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           LF+TF++M+P  ++  E  +QP +N QI+   A     EP   FM   TR KDL  F++M
Sbjct: 149 LFLTFFIMAPVFNQINEQAVQPYLNEQISARQAFDLAQEPMKAFMLKQTRVKDLETFVEM 208

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           + +      +T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM
Sbjct: 209 SGA-----QVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 263

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 264 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297


>gi|317129193|ref|YP_004095475.1| flagellar biosynthetic protein FliP [Bacillus cellulosilyticus DSM
           2522]
 gi|315474141|gb|ADU30744.1| flagellar biosynthetic protein FliP [Bacillus cellulosilyticus DSM
           2522]
          Length = 222

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 91/195 (46%), Positives = 134/195 (68%), Gaps = 4/195 (2%)

Query: 51  IAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMG 110
           IAP +LI++TCF R ++V S +R+G+    +PPN V++ LALF+TF++M+P      E  
Sbjct: 32  IAPSILILMTCFTRIVVVLSFVRSGLATQQMPPNQVLVGLALFITFFIMAPVFSEVNEQA 91

Query: 111 IQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYR 170
           +QP+   ++T+  A    A P   FM  +TREKDL+LFM  A      T     D I   
Sbjct: 92  LQPMFAGEMTQEEAFDAAALPMKEFMAQHTREKDLALFMGYAGLPRPET----LDDIPLT 147

Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230
            L+P+F ISEL+ +F+IGF+I +PFL+IDM+VA+++M+MGMMMLPP  I+LPFK++ FV+
Sbjct: 148 ALVPAFAISELKTAFQIGFMIFIPFLVIDMVVASVLMSMGMMMLPPVMIALPFKILLFVM 207

Query: 231 IDGWSLLVENLVKSF 245
           +DGW L+V +L+ SF
Sbjct: 208 VDGWHLVVRSLLLSF 222


>gi|253682024|ref|ZP_04862821.1| flagellar biosynthetic protein FliP [Clostridium botulinum D str.
           1873]
 gi|253561736|gb|EES91188.1| flagellar biosynthetic protein FliP [Clostridium botulinum D str.
           1873]
          Length = 257

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 91/206 (44%), Positives = 142/206 (68%), Gaps = 3/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   + T+LS+ P  L+M+T F R IIV   +R  +G    PPN ++I +ALF+T ++M
Sbjct: 53  IKLLVMLTVLSLLPSFLVMMTSFTRIIIVLGFMRNALGTQQAPPNQILIGIALFLTIFIM 112

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +PT     +  I+P + N+IT   AI   ++P   FM   TR+KDL LF+D++ +     
Sbjct: 113 APTYKTINKEAIKPFIENKITGQQAIDNASKPMREFMLKQTRDKDLELFLDISKTDK--A 170

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            ITK D++   ++IPSF+ISEL+ +F+IGFL+ +PFLIID++VA+++M+MGM MLPP  I
Sbjct: 171 KITK-DNVPMYVVIPSFIISELKTAFKIGFLLYIPFLIIDIVVASVLMSMGMFMLPPVMI 229

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FV++DGW LLV++L+  +
Sbjct: 230 SLPFKILLFVMVDGWYLLVKSLIMGY 255


>gi|262404469|ref|ZP_06081024.1| flagellar biosynthesis protein FliP [Vibrio sp. RC586]
 gi|262349501|gb|EEY98639.1| flagellar biosynthesis protein FliP [Vibrio sp. RC586]
          Length = 299

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 93/214 (43%), Positives = 141/214 (65%), Gaps = 8/214 (3%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D SI+  I+    + T+L   P ++I++T F R ++V SILR  MG+   P N VII +A
Sbjct: 92  DYSINLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 148

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           LF+TF++M+P  ++  E  +QP +N QI+   A     EP   FM   TR KDL  F++M
Sbjct: 149 LFLTFFIMAPVFNQINEQAVQPYLNEQISARQAFDLAQEPMKAFMLKQTRVKDLETFVEM 208

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           + +      +T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM
Sbjct: 209 SGA-----QVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 263

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 264 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297


>gi|89056669|ref|YP_512120.1| flagellar biosynthesis protein FliP [Jannaschia sp. CCS1]
 gi|88866218|gb|ABD57095.1| flagellar biosynthetic protein FliP [Jannaschia sp. CCS1]
          Length = 243

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 97/213 (45%), Positives = 141/213 (66%), Gaps = 10/213 (4%)

Query: 36  STWIVRTF---GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
           S+   R+F    + ++LS+AP L +MVTCFP  + V SILR  +G+   PPN++I+SLAL
Sbjct: 37  SSLTARSFQLIALISVLSLAPGLAVMVTCFPFVVTVLSILRQAIGLQQSPPNMLIVSLAL 96

Query: 93  FMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
           F+T++VM+P  + +   GI PL+  ++T   AI  + EPF  FM N     D S  + +A
Sbjct: 97  FLTYFVMAPVFEEAYRAGIAPLIAGELTPDAAIPLIYEPFRGFMLNRV---DTSTLVSLA 153

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
                  D    D     +LIPSFM+SE+ R+F+IGFL+ LPFL+ID++VA I+M+MGMM
Sbjct: 154 EL-RPGADAANPDP---SVLIPSFMLSEVERAFQIGFLVFLPFLVIDLVVAAILMSMGMM 209

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+PP  +SLPFK+ FFV+ DGW+L+   LV+S+
Sbjct: 210 MVPPAIVSLPFKLAFFVVADGWALITGALVRSY 242


>gi|254462066|ref|ZP_05075482.1| flagellar biosynthetic protein FliP [Rhodobacterales bacterium
           HTCC2083]
 gi|206678655|gb|EDZ43142.1| flagellar biosynthetic protein FliP [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 256

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 89/207 (42%), Positives = 141/207 (68%), Gaps = 4/207 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   + T L+I P  L+ +T F R IIV SILR  MG    PPN V+IS+ALF+TFY+M
Sbjct: 53  LQILALMTALTILPSFLLGITAFTRVIIVLSILRQAMGTQQTPPNQVLISIALFLTFYIM 112

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +PT ++  E  I P +N Q+    AI+  A     F+  NTRE +L++F +MA  +   +
Sbjct: 113 APTFEQIYEKAISPYLNGQMQPVAAIETGAAILSEFLILNTRESELAMFAEMAGDAPYES 172

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
               N+ + Y +L+P+F+ SEL+ +F+IGFL+ LPFL+ID+++A+I+MA+GMMML P  +
Sbjct: 173 ----NEDVPYTVLMPAFITSELKTAFQIGFLLFLPFLVIDLVIASILMALGMMMLSPMLV 228

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
           SLPFK++ FVL+DGW++ + ++  +++
Sbjct: 229 SLPFKLLLFVLVDGWAMTIGSIASTYV 255


>gi|171057713|ref|YP_001790062.1| flagellar biosynthesis protein FliP [Leptothrix cholodnii SP-6]
 gi|170775158|gb|ACB33297.1| flagellar biosynthetic protein FliP [Leptothrix cholodnii SP-6]
          Length = 262

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 94/206 (45%), Positives = 137/206 (66%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++T   FT LS  P +L+M+T F R +IV  +LR  +G  + PPN VI+ L+LF+TF+VM
Sbjct: 59  IQTLLFFTALSFLPAVLLMMTGFTRIVIVLGLLRQALGTQAAPPNQVIVGLSLFLTFFVM 118

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +PTLDR      +P   NQI    AI R   P   FM   TR+ DL+LF  +A    +  
Sbjct: 119 APTLDRVYADAYKPYAANQIGFEEAIARGEVPMRQFMLKQTRQSDLALFARLA----KLD 174

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
              K++    R+L+P+F+ SEL+ +F+IGFLI +PFL+IDM+VA+++M++GMMML P  +
Sbjct: 175 PAVKSEQAPLRVLVPAFVTSELKSAFQIGFLIFIPFLVIDMVVASVLMSLGMMMLSPVLV 234

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           +LPFK++ FVL DGW+LL+ +L  SF
Sbjct: 235 ALPFKLMLFVLADGWNLLLGSLAASF 260


>gi|254491717|ref|ZP_05104896.1| flagellar biosynthetic protein FliP [Methylophaga thiooxidans
           DMS010]
 gi|224463195|gb|EEF79465.1| flagellar biosynthetic protein FliP [Methylophaga thiooxydans
           DMS010]
          Length = 244

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 101/246 (41%), Positives = 153/246 (62%), Gaps = 6/246 (2%)

Query: 2   IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMV 59
           +R     L L  P L  A+  +  V     +    ++ V  +   + T+L++ P  L+M+
Sbjct: 1   MRVLLACLLLFAPLLAVAEPGIPAVTVTGNEDGGQSYTVTLQILALMTVLTLLPAALMMM 60

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R IIV +ILR  MG+ S P N ++I LALF+T ++M P  ++S +  + P M+ +I
Sbjct: 61  TSFTRIIIVLAILRQAMGVQSTPSNQILIGLALFLTIFIMHPVFNQSYQNAVVPYMDGEI 120

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
             TTA ++ ++PF  FM   TRE D+ LF  +        ++   + I + +L+PSF+ S
Sbjct: 121 EFTTAFEQASQPFKEFMIAQTRETDIELFASIGGYE----ELQSAEDIPFSLLLPSFVTS 176

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+ +F+IGFLI +PFLIID++VA+++MAMGMMML P  ISLPFK++ FVLIDGW+LL+ 
Sbjct: 177 ELKTAFQIGFLIFIPFLIIDLVVASVLMAMGMMMLSPMLISLPFKLMLFVLIDGWALLMG 236

Query: 240 NLVKSF 245
            L  SF
Sbjct: 237 TLASSF 242


>gi|238025697|ref|YP_002909928.1| flagellar biosynthesis protein FliP [Burkholderia glumae BGR1]
 gi|237874891|gb|ACR27224.1| Flagellar biosynthetic protein FliP [Burkholderia glumae BGR1]
          Length = 266

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 92/206 (44%), Positives = 139/206 (67%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T  + T+LS  P +++M+T F R IIV S++R  +G  + PPN V++ LALF+T +VM
Sbjct: 64  VQTMLLLTMLSFLPAIVLMMTSFTRIIIVLSLMRQALGTATTPPNQVLVGLALFLTLFVM 123

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP +DR+   G +P     +    A+QR   PF  FM   TRE DL+LF  +A +     
Sbjct: 124 SPVIDRAYNDGYKPFSAGTLPMDQAVQRGLAPFKTFMLKQTREGDLALFAKIAKAPA--- 180

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +   + +   +L+P+F+ SEL+  F+IGF I +PFLIID++VA+++M+MGMMM+ PT+I
Sbjct: 181 -MQGPEDVPLPLLVPAFVTSELKTGFQIGFTIFIPFLIIDLVVASVLMSMGMMMVSPTTI 239

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 240 SLPFKLMLFVLVDGWQLLIGSLAQSF 265


>gi|229528865|ref|ZP_04418255.1| flagellar biosynthesis protein FliP [Vibrio cholerae 12129(1)]
 gi|229332639|gb|EEN98125.1| flagellar biosynthesis protein FliP [Vibrio cholerae 12129(1)]
 gi|327484651|gb|AEA79058.1| Flagellar biosynthesis protein FliP [Vibrio cholerae LMA3894-4]
          Length = 299

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 93/214 (43%), Positives = 140/214 (65%), Gaps = 8/214 (3%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D SI+  I+    + T+L   P ++I++T F R ++V SILR  MG+   P N VII +A
Sbjct: 92  DYSINLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 148

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           LF+TF++M+P  ++  E  +QP +N QIT   A     EP   FM   TR  DL  F++M
Sbjct: 149 LFLTFFIMAPVFNQINEQAVQPYLNEQITARQAFDLAQEPLKAFMLKQTRVNDLETFVEM 208

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           + +      +T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM
Sbjct: 209 SGA-----QVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 263

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 264 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297


>gi|153213266|ref|ZP_01948678.1| flagellar biosynthetic protein FliP [Vibrio cholerae 1587]
 gi|124116066|gb|EAY34886.1| flagellar biosynthetic protein FliP [Vibrio cholerae 1587]
          Length = 287

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 93/214 (43%), Positives = 140/214 (65%), Gaps = 8/214 (3%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D SI+  I+    + T+L   P ++I++T F R ++V SILR  MG+   P N VII +A
Sbjct: 80  DYSINLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 136

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           LF+TF++M+P  ++  E  +QP +N QIT   A     EP   FM   TR  DL  F++M
Sbjct: 137 LFLTFFIMAPVFNQINEQAVQPYLNEQITARQAFDLAQEPLKAFMLKQTRVNDLETFVEM 196

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           + +      +T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM
Sbjct: 197 SGA-----QVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 251

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 252 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 285


>gi|153828653|ref|ZP_01981320.1| flagellar biosynthetic protein FliP [Vibrio cholerae 623-39]
 gi|148875924|gb|EDL74059.1| flagellar biosynthetic protein FliP [Vibrio cholerae 623-39]
          Length = 299

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 93/214 (43%), Positives = 140/214 (65%), Gaps = 8/214 (3%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D SI+  I+    + T+L   P ++I++T F R ++V SILR  MG+   P N VII +A
Sbjct: 92  DYSINLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 148

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           LF+TF++M+P  ++  E  +QP +N QIT   A     EP   FM   TR  DL  F++M
Sbjct: 149 LFLTFFIMAPVFNQINEQAVQPYLNEQITALQAFDLAQEPLKAFMLKQTRVNDLETFVEM 208

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           + +      +T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM
Sbjct: 209 SGA-----QVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 263

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 264 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297


>gi|302392379|ref|YP_003828199.1| flagellar biosynthetic protein FliP [Acetohalobium arabaticum DSM
           5501]
 gi|302204456|gb|ADL13134.1| flagellar biosynthetic protein FliP [Acetohalobium arabaticum DSM
           5501]
          Length = 257

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 91/201 (45%), Positives = 141/201 (70%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T+LS+AP +LIM+T F R  +V S++R  +    +PPN VII LA+F+T +VM+P   
Sbjct: 60  LLTVLSLAPAILIMLTSFVRIAVVLSLIRRALATRRMPPNQVIIGLAIFLTIFVMAPVWG 119

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +  +  +QP ++++I +  A ++  +P   FM   TREKD++LF+D+         +   
Sbjct: 120 QIYDTAVQPYLDDEINQMQAYEQGIKPLRKFMFKQTREKDIALFVDLGEIERPQNQM--- 176

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
             I   +LIP+F+ISELR +F+IGF+I LPF++IDMIVA+ +M+MGMMMLPP  ISLPFK
Sbjct: 177 -EIPTYVLIPAFIISELRIAFQIGFIIYLPFIVIDMIVASTLMSMGMMMLPPVMISLPFK 235

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW L++++L+K+F
Sbjct: 236 ILLFVLVDGWYLVIKSLIKTF 256


>gi|226327730|ref|ZP_03803248.1| hypothetical protein PROPEN_01603 [Proteus penneri ATCC 35198]
 gi|225203434|gb|EEG85788.1| hypothetical protein PROPEN_01603 [Proteus penneri ATCC 35198]
          Length = 256

 Score =  189 bits (479), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 100/248 (40%), Positives = 155/248 (62%), Gaps = 11/248 (4%)

Query: 3   RYCFFA---LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLI 57
           R+  FA   + L+ P   FA+     ++  P      +W   V+T    T L   P +L+
Sbjct: 13  RWRLFASVLVLLLLPTSAFAQ--FPGIITQPLPGGGQSWSLPVQTLIFITALGFIPAVLL 70

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           M+T F R IIV  +LR  +G  S PPN V++ LALFMTF++M+P  D+  +    P   +
Sbjct: 71  MMTSFTRIIIVLGLLRNALGTPSAPPNQVVLGLALFMTFFIMAPVFDKIYQDAYMPFTED 130

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
           QIT   A++  ++P   FM   TRE DL+LF  +A +    T     + +  RIL+P+++
Sbjct: 131 QITFEQALENGSKPLRQFMMQQTRETDLALFARLADAPAFET----RESVPMRILVPAYI 186

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
            SEL+ +F+IGF+I +PFLIID++VA+++MA+GMMM+PP ++SLPFK++ FVL+DGW L+
Sbjct: 187 TSELKTAFQIGFMIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGWQLI 246

Query: 238 VENLVKSF 245
           + +L +SF
Sbjct: 247 LGSLAQSF 254


>gi|224373184|ref|YP_002607556.1| flagellar biosynthesis protein FliP [Nautilia profundicola AmH]
 gi|223589473|gb|ACM93209.1| flagellar biosynthetic protein FliP [Nautilia profundicola AmH]
          Length = 242

 Score =  189 bits (479), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 93/194 (47%), Positives = 133/194 (68%), Gaps = 4/194 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +++++T F R ++VF  LR  +G    PP  +++SLAL +TF++M P   ++   GI
Sbjct: 52  APSIILVMTSFVRLLVVFGFLRQALGTPQSPPTTLLVSLALVLTFFIMEPYAKQAYNTGI 111

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           +P M  +I    A     +PF  FM  NTREKDL+LF  + H  +  T     D +   I
Sbjct: 112 KPYMEEKIGYDQAFNNAVKPFKKFMIKNTREKDLALFFRIRHLPNPKTI----DDVPLTI 167

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           L+P+FM+SEL+ +FEIGFLI LPFLIIDM+V++I+M++GMMMLPP  ISLPFK++ FVL+
Sbjct: 168 LVPAFMLSELKTAFEIGFLIFLPFLIIDMVVSSILMSLGMMMLPPVMISLPFKILVFVLV 227

Query: 232 DGWSLLVENLVKSF 245
           DGW+L+V  LV+SF
Sbjct: 228 DGWNLIVMGLVQSF 241


>gi|298530624|ref|ZP_07018026.1| flagellar biosynthetic protein FliP [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509998|gb|EFI33902.1| flagellar biosynthetic protein FliP [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 236

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 92/202 (45%), Positives = 139/202 (68%), Gaps = 4/202 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + TILS+AP +++ +TCF R IIVFS +R  +G   +PPN V+ +LA+F+T  +M+P   
Sbjct: 39  LLTILSVAPAIVLTITCFTRIIIVFSFIRHAIGTQQMPPNQVLAALAIFLTVAIMAPIGS 98

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              +  +QP +N +I    A+ R   P   FM  +TRE+DLS+F  +       +     
Sbjct: 99  EINQTALQPYLNEEIGHEEALSRAEGPMREFMFKHTRERDLSVFYSITGMERPES----R 154

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           + +   +LIP+FMISEL+ +F+IGFLI +PFLI+DM+VA+I+++MGMMMLPP  IS+PFK
Sbjct: 155 EDVPTMLLIPAFMISELKTAFQIGFLIYIPFLILDMVVASILLSMGMMMLPPVMISMPFK 214

Query: 225 VIFFVLIDGWSLLVENLVKSFI 246
           V+ F+++DGW+LLV +LV SF+
Sbjct: 215 VLLFIMVDGWNLLVGSLVNSFV 236


>gi|153803026|ref|ZP_01957612.1| flagellar biosynthetic protein FliP [Vibrio cholerae MZO-3]
 gi|124121424|gb|EAY40167.1| flagellar biosynthetic protein FliP [Vibrio cholerae MZO-3]
          Length = 299

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 93/214 (43%), Positives = 140/214 (65%), Gaps = 8/214 (3%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D SI+  I+    + T+L   P ++I++T F R ++V SILR  MG+   P N VII +A
Sbjct: 92  DYSINLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 148

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           LF+TF++M+P  ++  E  +QP +N QIT   A     EP   FM   TR  DL  F++M
Sbjct: 149 LFLTFFIMAPVFNQINEQAVQPYLNEQITARQAFDLAQEPLKAFMLKQTRVNDLETFVEM 208

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           + +      +T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM
Sbjct: 209 SGA-----QVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 263

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 264 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297


>gi|124265768|ref|YP_001019772.1| flagellar biosynthesis protein FliP [Methylibium petroleiphilum
           PM1]
 gi|124258543|gb|ABM93537.1| flagellar biosynthesis protein [Methylibium petroleiphilum PM1]
          Length = 254

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 95/206 (46%), Positives = 136/206 (66%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++T   FT LS  P +L+M+T F R +IV S+LR  +G  SVPPN V+I L+LF+T +VM
Sbjct: 51  IQTLLFFTALSFLPAVLLMMTGFTRIVIVLSLLRQALGTQSVPPNQVLIGLSLFLTLFVM 110

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            PT+D+      +P   NQI    A+ R   P   FM   TR+ DL LF  +A    +  
Sbjct: 111 GPTIDKVYSEAYKPFAANQIAFDEALARGEAPMRSFMLKQTRQSDLMLFARLA----KLD 166

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
              K +   +R+L+P+F+ SEL+ +F+IGFLI +PFLIIDMIVA+++M++GMMML P  +
Sbjct: 167 PAVKGEDAPFRVLVPAFVTSELKSAFQIGFLIFIPFLIIDMIVASVLMSLGMMMLSPVLV 226

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           +LPFK++ FVL DGW+LL+ +L  SF
Sbjct: 227 ALPFKLMLFVLADGWNLLLGSLAASF 252


>gi|24052334|gb|AAN43540.1| flagellar biosynthesis [Shigella flexneri 2a str. 301]
 gi|313650170|gb|EFS14583.1| flagellar biosynthetic protein FliP [Shigella flexneri 2a str.
           2457T]
 gi|332757282|gb|EGJ87619.1| flagellar biosynthetic protein FliP [Shigella flexneri 2747-71]
 gi|332757514|gb|EGJ87849.1| flagellar biosynthetic protein FliP [Shigella flexneri K-671]
 gi|332766686|gb|EGJ96890.1| flagellar biosynthetic protein FliP [Shigella flexneri 2930-71]
 gi|333017554|gb|EGK36866.1| flagellar biosynthetic protein FliP [Shigella flexneri K-304]
          Length = 204

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 91/205 (44%), Positives = 140/205 (68%), Gaps = 4/205 (1%)

Query: 41  RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100
           +T    T L+  P +L+M+T F R IIVF +LR  +G  S PPN V++ LALF+TF++MS
Sbjct: 2   QTLVFITSLTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMS 61

Query: 101 PTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD 160
           P +D+      QP    +I+   A+++ A+P   FM   TRE DL LF  +A++      
Sbjct: 62  PVIDKIYVDAYQPFSEEKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTG----P 117

Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
           +   + +  RIL+P+++ SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+
Sbjct: 118 LQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIA 177

Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245
           LPFK++ FVL+DGW LLV +L +SF
Sbjct: 178 LPFKLMLFVLVDGWQLLVGSLAQSF 202


>gi|270262391|ref|ZP_06190662.1| flagellar biosynthetic protein FliP [Serratia odorifera 4Rx13]
 gi|270043075|gb|EFA16168.1| flagellar biosynthetic protein FliP [Serratia odorifera 4Rx13]
          Length = 241

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 97/239 (40%), Positives = 154/239 (64%), Gaps = 9/239 (3%)

Query: 9   LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66
           L LV+P    A + L  +++ P      +W   V+T  + T LS  P +L+M+T F R I
Sbjct: 8   LLLVSPA---ALAQLPGLISQPLADGGQSWSLPVQTLVLLTSLSFLPAMLLMMTSFTRII 64

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IV  +LR  +G  S PPN V++ LALF+TF++MSP  D+  +    P   ++I+   A+ 
Sbjct: 65  IVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISLDAALD 124

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           + ++P   FM   TRE DL+L+  +A+       +   + +  RIL+P+++ SEL+ +F+
Sbjct: 125 KGSQPLREFMLRQTRETDLALYARLAN----QPPLAGPEAVPMRILLPAYVTSELKTAFQ 180

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGF + +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 181 IGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 239


>gi|121586791|ref|ZP_01676573.1| flagellar biosynthetic protein FliP [Vibrio cholerae 2740-80]
 gi|121548958|gb|EAX58997.1| flagellar biosynthetic protein FliP [Vibrio cholerae 2740-80]
          Length = 299

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 93/214 (43%), Positives = 140/214 (65%), Gaps = 8/214 (3%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D SI+  I+    + T+L   P ++I++T F R ++V SILR  MG+   P N VII +A
Sbjct: 92  DYSINLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 148

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           LF+TF++M+P  ++  E  +QP +N QIT   A     EP   FM   TR  DL  F++M
Sbjct: 149 LFLTFFIMAPVFNQINEQAVQPYLNEQITARQAFDLAQEPLKAFMLKQTRVNDLETFVEM 208

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           + +      +T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM
Sbjct: 209 SGA-----QVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 263

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 264 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297


>gi|220932509|ref|YP_002509417.1| flagellar biosynthetic protein FliP [Halothermothrix orenii H 168]
 gi|219993819|gb|ACL70422.1| flagellar biosynthetic protein FliP [Halothermothrix orenii H 168]
          Length = 254

 Score =  188 bits (478), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 95/194 (48%), Positives = 133/194 (68%), Gaps = 4/194 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP LL+MVT F R I+V  ++R  +    +PPN V+I LALF+T ++M+P      E  +
Sbjct: 64  APALLVMVTSFTRVIVVLGLIRQALATRRMPPNQVLIGLALFLTVFIMAPVWQDINEQAL 123

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           QP +NN+IT   A  R  +P   FM   TREKDL+LF++M               I   +
Sbjct: 124 QPYLNNEITTQQAYDRGIKPIRDFMFKQTREKDLALFVNMTGIERPEN----RADIPTYV 179

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           LIP+F+ISEL+ +F+IGFLI LPFL+IDM+VA+I+M+MGM+MLPP  ISLPFK++ F+L+
Sbjct: 180 LIPAFVISELKTAFQIGFLIYLPFLMIDMVVASILMSMGMLMLPPIIISLPFKLLLFILV 239

Query: 232 DGWSLLVENLVKSF 245
           DGW L++E+LVK+F
Sbjct: 240 DGWYLVIESLVKTF 253


>gi|148546750|ref|YP_001266852.1| flagellar biosynthesis protein FliP [Pseudomonas putida F1]
 gi|148510808|gb|ABQ77668.1| flagellar biosynthetic protein FliP [Pseudomonas putida F1]
          Length = 251

 Score =  188 bits (478), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 93/201 (46%), Positives = 134/201 (66%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           I T LS  P  +I++T F R IIVFSILR  +G+   P N ++  +ALF+T ++M+P  +
Sbjct: 52  IMTALSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQLLNGMALFLTMFIMAPVFE 111

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           R  +  +QP +  Q+T   AI +   P   FM   TR+ DL LFM ++    + TDI   
Sbjct: 112 RVNQDALQPYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDLDLFMRLS----KRTDIAGP 167

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D +   IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA+++MAMGMMML P  ISLPFK
Sbjct: 168 DQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFK 227

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW+L++  L  SF
Sbjct: 228 IMLFVLVDGWALIMGTLASSF 248


>gi|253998478|ref|YP_003050541.1| flagellar biosynthesis protein FliP [Methylovorus sp. SIP3-4]
 gi|253985157|gb|ACT50014.1| flagellar biosynthetic protein FliP [Methylovorus sp. SIP3-4]
          Length = 258

 Score =  188 bits (478), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 90/193 (46%), Positives = 135/193 (69%), Gaps = 4/193 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +L+M+T F R IIV S+LR  +G  + PPN V++ LALF+TF+VMSP +D+      Q
Sbjct: 69  PAVLLMMTGFTRIIIVLSLLRQALGTPTSPPNQVLVGLALFLTFFVMSPVMDKIYVEAYQ 128

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           PL  N+IT   A+++ A P   FM   TRE D++LFM ++    R+  +   +    R+L
Sbjct: 129 PLSENKITLQEALEKGAAPLKTFMLKQTREADIALFMRIS----RSDAVDGPEQTPLRVL 184

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           +P+FM SEL+ +F+IGF I +PFLIIDM+VA+++M+MGMMM+ P  ++LPFK++ FVL+D
Sbjct: 185 VPAFMTSELKTAFQIGFAIFIPFLIIDMVVASVLMSMGMMMVSPAIVALPFKLMLFVLVD 244

Query: 233 GWSLLVENLVKSF 245
           GW L++ +L +SF
Sbjct: 245 GWQLVLGSLAESF 257


>gi|311086976|gb|ADP67056.1| putative bifunctional flagellar biosynthesis protein FliO/FliP
           [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)]
          Length = 379

 Score =  188 bits (478), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 100/217 (46%), Positives = 143/217 (65%), Gaps = 8/217 (3%)

Query: 32  DLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           D    TW V  +T    T L+  P  L+M+T F R +IVF +LR  +G    PPN +++ 
Sbjct: 166 DDGSQTWSVPVQTLVFLTSLTFLPAFLLMMTSFTRIVIVFGLLRNALGTPYAPPNQILLG 225

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           LALF+TF++MSPT ++  +    P    ++    AI + + P   FM N  R  DL LF 
Sbjct: 226 LALFLTFFIMSPTFEKIYKDAYVPFSQEKMNMEDAILKGSMPLKKFMLNQIRTPDLELFS 285

Query: 150 DMAH-SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
            +AH SS++N    KND I  RIL+PSF+ SEL+ +F+IGF I +PFLIID++VA+++MA
Sbjct: 286 KLAHISSYKN----KND-IPMRILLPSFITSELKTAFQIGFTIFIPFLIIDLVVASVLMA 340

Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +GMMM+PP++ISLPFK++ FVL+DGW LL+ +L  SF
Sbjct: 341 LGMMMVPPSTISLPFKLMLFVLVDGWQLLITSLAHSF 377


>gi|219681460|ref|YP_002467845.1| flagellar biosynthetic protein FliP [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471135|ref|ZP_05635134.1| type III secretion system protein [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219624303|gb|ACL30458.1| flagellar biosynthetic protein FliP [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 379

 Score =  188 bits (478), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 100/217 (46%), Positives = 143/217 (65%), Gaps = 8/217 (3%)

Query: 32  DLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           D    TW V  +T    T L+  P  L+M+T F R +IVF +LR  +G    PPN +++ 
Sbjct: 166 DDGSQTWSVPVQTLVFLTSLTFLPAFLLMMTSFTRIVIVFGLLRNALGTPYAPPNQILLG 225

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           LALF+TF++MSPT ++  +    P    ++    AI + + P   FM N  R  DL LF 
Sbjct: 226 LALFLTFFIMSPTFEKIYKDAYVPFSQEKMNMEDAILKGSMPLKKFMLNQIRTPDLELFS 285

Query: 150 DMAH-SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
            +AH SS++N    KND I  RIL+PSF+ SEL+ +F+IGF I +PFLIID++VA+++MA
Sbjct: 286 KLAHISSYKN----KND-IPMRILLPSFITSELKTAFQIGFTIFIPFLIIDLVVASVLMA 340

Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +GMMM+PP++ISLPFK++ FVL+DGW LL+ +L  SF
Sbjct: 341 LGMMMVPPSTISLPFKLMLFVLVDGWQLLITSLAHSF 377


>gi|219682016|ref|YP_002468400.1| flagellar biosynthetic protein FliP [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219621749|gb|ACL29905.1| flagellar biosynthetic protein FliP [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|311085824|gb|ADP65906.1| putative bifunctional flagellar biosynthesis protein FliO/FliP
           [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)]
 gi|311086397|gb|ADP66478.1| putative bifunctional flagellar biosynthesis protein FliO/FliP
           [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)]
 gi|311087553|gb|ADP67632.1| putative bifunctional flagellar biosynthesis protein FliO/FliP
           [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)]
          Length = 379

 Score =  188 bits (478), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 100/217 (46%), Positives = 143/217 (65%), Gaps = 8/217 (3%)

Query: 32  DLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           D    TW V  +T    T L+  P  L+M+T F R +IVF +LR  +G    PPN +++ 
Sbjct: 166 DDGSQTWSVPVQTLVFLTSLTFLPAFLLMMTSFTRIVIVFGLLRNALGTPYAPPNQILLG 225

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           LALF+TF++MSPT ++  +    P    ++    AI + + P   FM N  R  DL LF 
Sbjct: 226 LALFLTFFIMSPTFEKIYKDAYVPFSQEKMNMEDAILKGSMPLKKFMLNQIRTPDLELFS 285

Query: 150 DMAH-SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
            +AH SS++N    KND I  RIL+PSF+ SEL+ +F+IGF I +PFLIID++VA+++MA
Sbjct: 286 KLAHISSYKN----KND-IPMRILLPSFITSELKTAFQIGFTIFIPFLIIDLVVASVLMA 340

Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +GMMM+PP++ISLPFK++ FVL+DGW LL+ +L  SF
Sbjct: 341 LGMMMVPPSTISLPFKLMLFVLVDGWQLLITSLAHSF 377


>gi|74317628|ref|YP_315368.1| flagellar biosynthesis protein FliP [Thiobacillus denitrificans
           ATCC 25259]
 gi|74057123|gb|AAZ97563.1| flagellar transport protein FliP [Thiobacillus denitrificans ATCC
           25259]
          Length = 253

 Score =  188 bits (478), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 95/193 (49%), Positives = 130/193 (67%), Gaps = 4/193 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P  L+M+T F R IIV S+LR  +G  S PPN V+I LALF+T +VM PT D+      Q
Sbjct: 64  PAALLMMTSFTRIIIVLSLLRHALGTQSSPPNQVLIGLALFLTLFVMGPTFDKIYVEAYQ 123

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           PL  N+I    A+ + A P   FM   TRE DL+LF+ M+ S    T       I  R+L
Sbjct: 124 PLAENRIQMQEALDKGAVPLRAFMLKQTRESDLALFVKMSRSPAPKT----AADIPMRVL 179

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           IP+++ SEL+ +F+IGF + +PFLIIDM+VA+I+MAMGMMM+ P  ++LPFK+I FVL+D
Sbjct: 180 IPAYITSELKTAFQIGFAVFIPFLIIDMVVASILMAMGMMMVSPAIVALPFKIILFVLVD 239

Query: 233 GWSLLVENLVKSF 245
           GW+LL+ +L +SF
Sbjct: 240 GWNLLLGSLAQSF 252


>gi|237752332|ref|ZP_04582812.1| flagellar biosynthesis protein FliP [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375821|gb|EEO25912.1| flagellar biosynthesis protein FliP [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 249

 Score =  188 bits (478), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 99/216 (45%), Positives = 142/216 (65%), Gaps = 7/216 (3%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P DL  +  IV    I T+L +AP L++M T F R +IVFS LRT MG    PP  +++S
Sbjct: 40  PGDLVTTLNIVV---ILTLLVLAPSLILMATSFARILIVFSFLRTAMGTQQSPPTQLLVS 96

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
            AL +T ++M P      E GI+P +  +I    A  R ++PF  FM  NTR KDL+LF 
Sbjct: 97  FALILTMFIMEPVAKEGYEKGIKPYIAKEIPYDEAFLRASQPFKDFMIRNTRPKDLALFY 156

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
            + +  +  T       +   I +P+F+ISE++ +F+IGFL+ LPFL+IDM++++I+MAM
Sbjct: 157 RIRNLENPQT----AQDVPLSIALPAFIISEMKTAFQIGFLLYLPFLVIDMVISSILMAM 212

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMMLPPT ISLPFK++ F+L+DG++LL  NLV+SF
Sbjct: 213 GMMMLPPTMISLPFKILIFILVDGFNLLTMNLVQSF 248


>gi|327441040|dbj|BAK17405.1| flagellar biosynthesis pathway, component FliP [Solibacillus
           silvestris StLB046]
          Length = 221

 Score =  188 bits (478), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 89/194 (45%), Positives = 136/194 (70%), Gaps = 4/194 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP LLI++T F R +IV S  RT +    +PPN VII LALF+TF++M+PT  +  E  +
Sbjct: 32  APSLLILMTSFARIVIVLSFTRTALATNQMPPNQVIIGLALFLTFFIMAPTFQQVNEQAL 91

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           QPL + +I    A  R   PF  FM  +TR+KDL LF++   + + ++     + I   +
Sbjct: 92  QPLFDEEINLEEAYDRATIPFKQFMAQHTRQKDLELFIEYNQAEYPDS----IEEIPMTL 147

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           L+P+F +SE++ +F++GF+I +PFL+IDM+VA+ +M+MGMMMLPP  ISLPFK++ FVL+
Sbjct: 148 LVPAFALSEIKTAFQMGFMIFIPFLVIDMVVASTLMSMGMMMLPPVMISLPFKILLFVLV 207

Query: 232 DGWSLLVENLVKSF 245
           DGW L++++L++SF
Sbjct: 208 DGWYLVMKSLLQSF 221


>gi|15616704|ref|NP_239916.1| type III secretion system protein [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|12644517|sp|P57184|FLIP_BUCAI RecName: Full=Flagellar biosynthetic protein fliP
 gi|25403546|pir||B84939 flagellar biosynthetic protein fliP [imported] - Buchnera sp.
           (strain APS)
 gi|10038767|dbj|BAB12802.1| flagellar biosynthetic protein fliP [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 379

 Score =  188 bits (478), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 100/217 (46%), Positives = 143/217 (65%), Gaps = 8/217 (3%)

Query: 32  DLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           D    TW V  +T    T L+  P  L+M+T F R +IVF +LR  +G    PPN +++ 
Sbjct: 166 DDGSQTWSVPVQTLVFLTSLTFLPAFLLMMTSFTRIVIVFGLLRNALGTPYAPPNQILLG 225

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           LALF+TF++MSPT ++  +    P    ++    AI + + P   FM N  R  DL LF 
Sbjct: 226 LALFLTFFIMSPTFEKIYKDAYVPFSQEKMNMEDAILKGSMPLKKFMLNQIRTPDLELFS 285

Query: 150 DMAH-SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
            +AH SS++N    KND I  RIL+PSF+ SEL+ +F+IGF I +PFLIID++VA+++MA
Sbjct: 286 KLAHISSYKN----KND-IPMRILLPSFITSELKTAFQIGFTIFIPFLIIDLVVASVLMA 340

Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +GMMM+PP++ISLPFK++ FVL+DGW LL+ +L  SF
Sbjct: 341 LGMMMVPPSTISLPFKLMLFVLVDGWQLLITSLAHSF 377


>gi|288573013|ref|ZP_06391370.1| flagellar biosynthetic protein FliP [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288568754|gb|EFC90311.1| flagellar biosynthetic protein FliP [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 256

 Score =  188 bits (477), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 90/216 (41%), Positives = 148/216 (68%), Gaps = 7/216 (3%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P D+S S  IV    + T+LS+AP +L+MVT F R ++V   +R  +G+   PPN VI++
Sbjct: 47  PQDVSTSLQIV---ALLTVLSVAPAILLMVTSFTRVLVVLGFVRNALGLQQTPPNQVIVT 103

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           LALF++ ++M+PT D     G+ P M  +I    A++ V  P   FM + TRE++LSL +
Sbjct: 104 LALFLSLFIMAPTWDVMYSQGLSPYMEGRIGSMEALENVTTPLRRFMLSQTREEELSLMV 163

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
            M+     ++     D I  ++L+P++M+SEL+ +F++G +I +PF+++DMI+++++M+M
Sbjct: 164 SMSGLERPSSA----DDIPNKVLLPAYMLSELKSAFQMGIVIYVPFIVVDMIISSVLMSM 219

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GM+MLPP  ISLPFKV+ FV+ DGW+L+V +L++SF
Sbjct: 220 GMIMLPPMMISLPFKVLLFVMADGWNLVVVSLIRSF 255


>gi|332531133|ref|ZP_08407047.1| flagellar biosynthesis protein FliP [Hylemonella gracilis ATCC
           19624]
 gi|332039418|gb|EGI75830.1| flagellar biosynthesis protein FliP [Hylemonella gracilis ATCC
           19624]
          Length = 267

 Score =  188 bits (477), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 94/206 (45%), Positives = 135/206 (65%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++T   FT LS  P +L+M+T F R +IV S+LR  +G  S PPN VII L+LF+TF+VM
Sbjct: 64  IQTLLFFTALSFLPAVLLMMTGFTRIVIVLSLLRQALGTQSAPPNQVIIGLSLFLTFFVM 123

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            PT DR      QP   N +T   A+ R   P   FM   TR+ DL+LF+ ++      T
Sbjct: 124 GPTFDRVYAEAYQPYTRNALTFEQAVDRAEVPVREFMSKQTRQSDLALFVRLSKLDAATT 183

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                ++   R+LIP+F+ SEL+ +F+ GFLI +PFL+IDM+VA+++M++GMMML P  +
Sbjct: 184 ----AENAPMRVLIPAFVTSELKTAFQFGFLIFIPFLVIDMVVASVLMSLGMMMLSPVLV 239

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           +LPFK++ FVL DGW+LL+ +L  SF
Sbjct: 240 ALPFKLMLFVLADGWNLLIGSLAASF 265


>gi|85058021|ref|YP_453723.1| flagellar biosynthesis protein FliP [Sodalis glossinidius str.
           'morsitans']
 gi|84778541|dbj|BAE73318.1| flagellar protein FliP [Sodalis glossinidius str. 'morsitans']
          Length = 256

 Score =  188 bits (477), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 92/206 (44%), Positives = 138/206 (66%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T  + T L+  P  L++++ F R IIV SILR  +G  S PPN +++ LAL +TF+VM
Sbjct: 53  VQTLVLLTSLTFLPAALLLMSGFTRIIIVLSILRNALGTPSAPPNQILLGLALCLTFFVM 112

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP LD        P   +QI   TAI+R A+P   FM   TRE DLSL+  +     +  
Sbjct: 113 SPVLDSIYRDAYLPFSQDQIDMDTAIERAAQPLRQFMLTQTRETDLSLYARLG----KQA 168

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                + +  +IL+P+F+ SEL+ +F+IGF + +PFLIID+++A+++MA+GMMMLPPT++
Sbjct: 169 AFAGPEQVPMQILLPAFVTSELKTAFQIGFTLFIPFLIIDLVIASVLMALGMMMLPPTTV 228

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FV++DGW LL+ +L +SF
Sbjct: 229 SLPFKLMLFVMVDGWQLLLGSLAQSF 254


>gi|134300235|ref|YP_001113731.1| flagellar biosynthesis protein FliP [Desulfotomaculum reducens
           MI-1]
 gi|134052935|gb|ABO50906.1| flagellar biosynthetic protein FliP [Desulfotomaculum reducens
           MI-1]
          Length = 257

 Score =  188 bits (477), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 92/200 (46%), Positives = 139/200 (69%), Gaps = 6/200 (3%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T+LS+ P  L+M+T F R I+V S LR+ +G    PPN V+I LALF+T ++M+P     
Sbjct: 62  TLLSMVPAFLMMLTSFTRIIVVLSFLRSALGTQQTPPNQVLIGLALFLTIFIMNPVYQDI 121

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-D 165
            +  IQP + NQ+T   A  + A+P   FM   TREKDL LF+++A       D  KN +
Sbjct: 122 NKNSIQPYLANQLTYEQATDQAAKPLRNFMVRQTREKDLGLFLNIAK-----MDKPKNAN 176

Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225
            +   +L+P+F+ISEL+ +F+IGF++ +PFL+IDM+VA+ +M+MGM MLPP  ++LPFK+
Sbjct: 177 EVPMSVLVPAFVISELKTAFQIGFILFVPFLVIDMVVASTLMSMGMFMLPPVMVALPFKL 236

Query: 226 IFFVLIDGWSLLVENLVKSF 245
           + FV++DGW L+V++LV+SF
Sbjct: 237 LLFVMVDGWYLVVKSLVESF 256


>gi|188589499|ref|YP_001920217.1| flagellar biosynthetic protein FliP [Clostridium botulinum E3 str.
           Alaska E43]
 gi|251778351|ref|ZP_04821271.1| flagellar biosynthetic protein FliP [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|188499780|gb|ACD52916.1| flagellar biosynthetic protein FliP [Clostridium botulinum E3 str.
           Alaska E43]
 gi|243082666|gb|EES48556.1| flagellar biosynthetic protein FliP [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 259

 Score =  188 bits (477), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 92/200 (46%), Positives = 142/200 (71%), Gaps = 3/200 (1%)

Query: 46  FTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDR 105
           FTIL++ P ++IM+T F R +IVFS +++ MG+    PN ++  LALF+T ++MSP  + 
Sbjct: 62  FTILAVLPSIVIMLTSFTRIVIVFSFIKSAMGVQQAIPNQILTGLALFLTIFIMSPVYNE 121

Query: 106 SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165
                 QP +   IT+  AI+  ++P   FM   TREKDL LF+++ +      ++T+ +
Sbjct: 122 VNTKAFQPYIEQSITQEEAIEIGSKPIKDFMLKQTREKDLELFVEINNVDKE--ELTR-E 178

Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225
           +I +  LIP+F ISEL+ +F+IGFLI LPF++IDM+VA+++M+MGMMMLPP  +SLPFK+
Sbjct: 179 NIPFTTLIPAFAISELKTAFQIGFLIYLPFIVIDMVVASVLMSMGMMMLPPAMVSLPFKL 238

Query: 226 IFFVLIDGWSLLVENLVKSF 245
           + FV++DGW LLV++L+ SF
Sbjct: 239 LLFVMVDGWYLLVKSLIMSF 258


>gi|158320529|ref|YP_001513036.1| flagellar biosynthetic protein FliP [Alkaliphilus oremlandii
           OhILAs]
 gi|158140728|gb|ABW19040.1| flagellar biosynthetic protein FliP [Alkaliphilus oremlandii
           OhILAs]
          Length = 269

 Score =  188 bits (477), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 88/197 (44%), Positives = 141/197 (71%), Gaps = 8/197 (4%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +LIMVT F R IIV S LR  +     PP  V+I LALF+TF++M+P      +  +
Sbjct: 77  APAILIMVTSFTRIIIVLSFLRNALATQQTPPTQVLIGLALFLTFFIMAPVASEINQNAL 136

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN---DHIE 168
           QP +N +IT+  A++   +P   FM   TREKDL+LF++ +     N+++++N   + I+
Sbjct: 137 QPFLNQEITQQQAVEEAMDPLREFMFRQTREKDLALFIEAS-----NSEVSENFQVEDIK 191

Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
              LIP+F+ISEL+ +F++GF++ +PF+++DM+VA+++M+MGMMMLPP  ISLPFK++ F
Sbjct: 192 TTTLIPAFIISELKTAFQMGFVLFIPFIVLDMVVASVLMSMGMMMLPPAMISLPFKLMLF 251

Query: 229 VLIDGWSLLVENLVKSF 245
           V++DGW++L+++L+ SF
Sbjct: 252 VMVDGWNVLIKSLLLSF 268


>gi|15596643|ref|NP_250137.1| flagellar biosynthesis protein FliP [Pseudomonas aeruginosa PAO1]
 gi|107100880|ref|ZP_01364798.1| hypothetical protein PaerPA_01001910 [Pseudomonas aeruginosa PACS2]
 gi|116049391|ref|YP_791806.1| flagellar biosynthesis protein FliP [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218892681|ref|YP_002441550.1| flagellar biosynthesis protein FliP [Pseudomonas aeruginosa LESB58]
 gi|254234545|ref|ZP_04927868.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa C3719]
 gi|254239796|ref|ZP_04933118.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa 2192]
 gi|296390187|ref|ZP_06879662.1| flagellar biosynthesis protein FliP [Pseudomonas aeruginosa PAb1]
 gi|313106445|ref|ZP_07792676.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa 39016]
 gi|12230927|sp|Q51468|FLIP_PSEAE RecName: Full=Flagellar biosynthetic protein fliP
 gi|9947397|gb|AAG04835.1|AE004574_6 flagellar biosynthetic protein FliP [Pseudomonas aeruginosa PAO1]
 gi|115584612|gb|ABJ10627.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126166476|gb|EAZ51987.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa C3719]
 gi|126193174|gb|EAZ57237.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa 2192]
 gi|218772909|emb|CAW28721.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa LESB58]
 gi|310879178|gb|EFQ37772.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa 39016]
          Length = 255

 Score =  188 bits (477), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 93/201 (46%), Positives = 134/201 (66%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           I T LS  P  ++++T F R IIVFSILR  +G+ S P N V++ LALF+T +VM+P  D
Sbjct: 56  IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFD 115

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +     +QP +N QI    A+Q+   P   FM   TR  DL LF+ ++    + TDI   
Sbjct: 116 KINSQALQPYLNEQIPAQEALQKAEVPLKAFMLAQTRTSDLELFVRLS----KRTDIGSP 171

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           +     IL+P+F+ SEL+ +F+IGF+I +PFLIID++V++++MAMGMMML P  ISLPFK
Sbjct: 172 EATPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSVLMAMGMMMLSPLIISLPFK 231

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW+L++  L  SF
Sbjct: 232 IMLFVLVDGWALIIGTLAGSF 252


>gi|197285499|ref|YP_002151371.1| flagellar biosynthetic protein [Proteus mirabilis HI4320]
 gi|194682986|emb|CAR43419.1| flagellar biosynthetic protein [Proteus mirabilis HI4320]
          Length = 256

 Score =  188 bits (477), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 101/248 (40%), Positives = 154/248 (62%), Gaps = 11/248 (4%)

Query: 3   RYCFFALFLVT---PELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLI 57
           R+  FA  L+    P   FA+     V++ P      +W   V+T    T L   P +L+
Sbjct: 13  RWPLFASVLILSLLPSHAFAQ--FPSVISHPLPGGGQSWSLPVQTLIFITALGFIPAVLL 70

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           M+T F R IIV  +LR  +G  S PPN V++ LALFMTF++M+P  D+  +    P   +
Sbjct: 71  MMTSFTRIIIVLGLLRNALGTPSAPPNQVVLGLALFMTFFIMAPVFDKIYQDAYLPFSED 130

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
           +IT   A+   ++P   FM   TRE DL+LF  +A +    T     D +  RIL+P+++
Sbjct: 131 KITFEQALDNGSQPLRQFMMQQTRETDLALFARLADAPAFET----RDSVPMRILVPAYI 186

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
            SEL+ +F+IGF+I +PFLIID++VA+++MA+GMMM+PP ++SLPFK++ FVL+DGW L+
Sbjct: 187 TSELKTAFQIGFMIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGWQLI 246

Query: 238 VENLVKSF 245
           + +L +SF
Sbjct: 247 LGSLAQSF 254


>gi|313200553|ref|YP_004039211.1| flagellar biosynthetic protein flip [Methylovorus sp. MP688]
 gi|312439869|gb|ADQ83975.1| flagellar biosynthetic protein FliP [Methylovorus sp. MP688]
          Length = 270

 Score =  188 bits (477), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 90/193 (46%), Positives = 135/193 (69%), Gaps = 4/193 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +L+M+T F R IIV S+LR  +G  + PPN V++ LALF+TF+VMSP +D+      Q
Sbjct: 81  PAVLLMMTGFTRIIIVLSLLRQALGTPTSPPNQVLVGLALFLTFFVMSPVMDKIYVEAYQ 140

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           PL  N+IT   A+++ A P   FM   TRE D++LFM ++    R+  +   +    R+L
Sbjct: 141 PLSENKITLQEALEKGAAPLKTFMLKQTREADIALFMRIS----RSDAVDGPEQTPLRVL 196

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           +P+FM SEL+ +F+IGF I +PFLIIDM+VA+++M+MGMMM+ P  ++LPFK++ FVL+D
Sbjct: 197 VPAFMTSELKTAFQIGFAIFIPFLIIDMVVASVLMSMGMMMVSPAIVALPFKLMLFVLVD 256

Query: 233 GWSLLVENLVKSF 245
           GW L++ +L +SF
Sbjct: 257 GWQLVLGSLAESF 269


>gi|261407968|ref|YP_003244209.1| flagellar biosynthetic protein FliP [Paenibacillus sp. Y412MC10]
 gi|329929296|ref|ZP_08283049.1| flagellar biosynthetic protein FliP [Paenibacillus sp. HGF5]
 gi|261284431|gb|ACX66402.1| flagellar biosynthetic protein FliP [Paenibacillus sp. Y412MC10]
 gi|328936665|gb|EGG33108.1| flagellar biosynthetic protein FliP [Paenibacillus sp. HGF5]
          Length = 250

 Score =  187 bits (476), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 89/194 (45%), Positives = 135/194 (69%), Gaps = 4/194 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +L+++T F R +IV   +RT +G    PPN V+I LALF+T +VM+PTL    E+ +
Sbjct: 59  APAILVLMTSFTRIVIVLGFVRTSLGTQQTPPNQVLIGLALFLTLFVMAPTLSSMNEVAL 118

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           QP +  +IT+  A+ +  +P   FM  +TREKDL LFM+   +    +     + I   +
Sbjct: 119 QPYLKGEITQAEALDKAQDPMKKFMFAHTREKDLLLFMNYTGAEKPES----YEDIPLTV 174

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           L+P+F ISEL+  F++GF+I +PFL+ID++VA+++MAMGMMMLPP  ISLPFK++ FVL+
Sbjct: 175 LVPAFAISELKTGFQMGFMIFIPFLVIDIVVASVLMAMGMMMLPPVMISLPFKILLFVLV 234

Query: 232 DGWSLLVENLVKSF 245
           DGW L+V++++ SF
Sbjct: 235 DGWYLVVKSMLMSF 248


>gi|82702484|ref|YP_412050.1| flagellar biosynthesis protein FliP [Nitrosospira multiformis ATCC
           25196]
 gi|82410549|gb|ABB74658.1| flagellar biosynthetic protein FliP [Nitrosospira multiformis ATCC
           25196]
          Length = 262

 Score =  187 bits (476), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 87/193 (45%), Positives = 134/193 (69%), Gaps = 4/193 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +L+M+T F R IIV S+LR  +G  S PPN V++ LALF+TF+VMSP  D+  +   Q
Sbjct: 73  PAVLLMMTGFTRVIIVLSLLRQALGTQSSPPNQVLVGLALFLTFFVMSPVFDKIYQDAYQ 132

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P + N++T   A+++ A P   FM   TRE DL+LF+ ++     N      + +  R+L
Sbjct: 133 PYVENRMTMEQALEKGAVPLKAFMLKQTRETDLALFVKLSGRPQLNGP----EEVSLRVL 188

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           +P+F+ SEL+ +F+IGF + +PFLIIDM+VA+++M+MGMMM+ P  ++LPFK++ FVL+D
Sbjct: 189 VPAFVTSELKTAFQIGFAVFIPFLIIDMVVASVLMSMGMMMVSPALVALPFKIMLFVLVD 248

Query: 233 GWSLLVENLVKSF 245
           GW +L+ +L +SF
Sbjct: 249 GWHMLIGSLAESF 261


>gi|167464152|ref|ZP_02329241.1| flagellar biosynthesis protein FliP [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 257

 Score =  187 bits (476), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 87/194 (44%), Positives = 137/194 (70%), Gaps = 4/194 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP  LI++T F R +IV   +RT +G   +PPN V++ LALF+T ++M+PTL    ++ +
Sbjct: 66  APAFLILMTSFTRIVIVLGFVRTSLGTQQMPPNQVLVGLALFLTLFIMAPTLGDINQVAV 125

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           QP +  ++ +T A+++ AEP   FM ++TR KDL LF+D +++   N      +      
Sbjct: 126 QPYIKGELNQTQALEKAAEPIKKFMWSHTRPKDLQLFLDYSNAEKPNGP----EDTPIAA 181

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           L+P+F ISEL+ +F++GF+I +PFL+IDMI+++ +MAMGMMMLPP  ISLPFK++ FVL+
Sbjct: 182 LVPAFAISELKTAFQMGFMIFIPFLVIDMIISSTLMAMGMMMLPPVMISLPFKILLFVLV 241

Query: 232 DGWSLLVENLVKSF 245
           DGW L+V++L+ S+
Sbjct: 242 DGWYLVVKSLLVSY 255


>gi|293395593|ref|ZP_06639876.1| flagellar biosynthetic protein FliP [Serratia odorifera DSM 4582]
 gi|291421912|gb|EFE95158.1| flagellar biosynthetic protein FliP [Serratia odorifera DSM 4582]
          Length = 259

 Score =  187 bits (476), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 94/229 (41%), Positives = 150/229 (65%), Gaps = 6/229 (2%)

Query: 19  AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
           A + L  +++ P      +W   V+T  + T LS  P +L+M+T F R IIV  +LR  +
Sbjct: 33  AIAQLPGLISQPLAGGGQSWTLPVQTLVLLTSLSFLPAMLLMMTSFTRIIIVLGLLRNAL 92

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G  + PPN V++ LALF+TF++M+P  D+  +    P   ++I+  TAI + A+P   FM
Sbjct: 93  GTPTAPPNQVMLGLALFLTFFIMAPVFDKVYQDAYLPFSQDKISMETAIDQGAQPLREFM 152

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
              TRE DL+L+  +A+       +   + +  RIL+P+++ SEL+ +F+IGF + +PFL
Sbjct: 153 LRQTREADLALYARLANLP----PLAGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFL 208

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 209 IIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 257


>gi|90579937|ref|ZP_01235745.1| flagellar biosynthesis protein [Vibrio angustum S14]
 gi|90438822|gb|EAS64005.1| flagellar biosynthesis protein [Vibrio angustum S14]
          Length = 282

 Score =  187 bits (476), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 92/206 (44%), Positives = 137/206 (66%), Gaps = 5/206 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   + T L   P ++I++T F R ++V SILR  MG+   P N VII +ALF+TF+VM
Sbjct: 80  LQILALMTALGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFVM 139

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP +D+     +QP +N QIT   A+ +  +P   FM   TR KDL  F++M+ S+  + 
Sbjct: 140 SPVIDKINANAVQPYINEQITAKEALAKAEDPMRQFMLKQTRVKDLETFVNMSGSTADDP 199

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                  +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+I+MAMGMMML P  +
Sbjct: 200 Q-----TVPLTVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASILMAMGMMMLSPMIV 254

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 255 SLPFKLMLFVLVDGWNLILSTLAGSF 280


>gi|85859180|ref|YP_461382.1| flagellar biosynthesis protein FliP [Syntrophus aciditrophicus SB]
 gi|85722271|gb|ABC77214.1| flagellar biosynthetic protein [Syntrophus aciditrophicus SB]
          Length = 262

 Score =  187 bits (476), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 90/207 (43%), Positives = 140/207 (67%), Gaps = 4/207 (1%)

Query: 39  IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
           +++   I T+LS+ P +L+M+T F R +IV S+LR  MG   +P N +II L+LF+TF++
Sbjct: 59  VIQLLFILTVLSLTPAILLMLTSFTRIVIVLSLLRQAMGTQQMPSNQIIIGLSLFLTFFI 118

Query: 99  MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
           MSP         ++P  + +I+   AI+R   P   FM   TREKD++LF+ ++      
Sbjct: 119 MSPVWQSVHSEALKPYYDEEISGEQAIERAVIPVKAFMLKQTREKDIALFLQISKGKRPE 178

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
               K   +   +L+P+F+ISEL+ +F+IGFL+ LPF IIDM+VA+++++MGMMMLPP  
Sbjct: 179 ----KPADLALSVLVPAFVISELKTAFQIGFLLFLPFFIIDMVVASVLLSMGMMMLPPIM 234

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +SLPFK++ FVL+DGW L++ +LV+SF
Sbjct: 235 MSLPFKLLLFVLVDGWYLIIGSLVQSF 261


>gi|188025878|ref|ZP_02997695.1| hypothetical protein PROSTU_02049 [Providencia stuartii ATCC 25827]
 gi|188020828|gb|EDU58868.1| hypothetical protein PROSTU_02049 [Providencia stuartii ATCC 25827]
          Length = 185

 Score =  187 bits (476), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 89/186 (47%), Positives = 129/186 (69%), Gaps = 4/186 (2%)

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R IIV  +LR  +G  S PPN V++ LALF+TF+VMSP  D++     QP   ++I
Sbjct: 2   TSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFVMSPVADQAYREAYQPFSEDKI 61

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           +  TA++R   PF  FM   TRE DL+LF  +A       +I +   +  RIL+P+F+ S
Sbjct: 62  SLETALERGTAPFRTFMLGQTRESDLALFARIAKVG----EIQEAKDVPMRILVPAFITS 117

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+ +F+IGF I +PFLIID++VA+++MA+GMMM+PP ++SLPFK++ FVL+DGW LL+ 
Sbjct: 118 ELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGWQLLLG 177

Query: 240 NLVKSF 245
           +L +SF
Sbjct: 178 SLSQSF 183


>gi|322382378|ref|ZP_08056285.1| flagellar biosynthesis protein FliP [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321153731|gb|EFX46106.1| flagellar biosynthesis protein FliP [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 255

 Score =  187 bits (476), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 87/194 (44%), Positives = 137/194 (70%), Gaps = 4/194 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP  LI++T F R +IV   +RT +G   +PPN V++ LALF+T ++M+PTL    ++ +
Sbjct: 64  APAFLILMTSFTRIVIVLGFVRTSLGTQQMPPNQVLVGLALFLTLFIMAPTLGDINQVAV 123

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           QP +  ++ +T A+++ AEP   FM ++TR KDL LF+D +++   N      +      
Sbjct: 124 QPYIKGELNQTQALEKAAEPIKKFMWSHTRPKDLQLFLDYSNAEKPNGP----EDTPIAA 179

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           L+P+F ISEL+ +F++GF+I +PFL+IDMI+++ +MAMGMMMLPP  ISLPFK++ FVL+
Sbjct: 180 LVPAFAISELKTAFQMGFMIFIPFLVIDMIISSTLMAMGMMMLPPVMISLPFKILLFVLV 239

Query: 232 DGWSLLVENLVKSF 245
           DGW L+V++L+ S+
Sbjct: 240 DGWYLVVKSLLVSY 253


>gi|308068668|ref|YP_003870273.1| flagellar biosynthetic protein fliP [Paenibacillus polymyxa E681]
 gi|310641559|ref|YP_003946317.1| flagellar transport protein flip [Paenibacillus polymyxa SC2]
 gi|305857947|gb|ADM69735.1| Flagellar biosynthetic protein fliP [Paenibacillus polymyxa E681]
 gi|309246509|gb|ADO56076.1| Flagellar transport protein FliP [Paenibacillus polymyxa SC2]
          Length = 251

 Score =  187 bits (476), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 89/202 (44%), Positives = 141/202 (69%), Gaps = 6/202 (2%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T++S+AP LL+++T F R +IV   +RT +G   +PPN V++ LALF+T ++M+PT  
Sbjct: 53  LITVISVAPALLVLMTSFTRIVIVLGFVRTSLGTQQMPPNQVLVGLALFLTLFIMAPTFS 112

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              E  +QP +   IT++ A+ + + P   FM ++TREKDL LFM      +   +  KN
Sbjct: 113 AMNETALQPYLKGDITQSQALDKASVPIKTFMFSHTREKDLLLFMK-----YTKMEKPKN 167

Query: 165 -DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
              I   +++P++ ISEL+ +F++GF+I +PFL+ID++V++ +MAMGMMMLPP  ISLPF
Sbjct: 168 YQDIPLTVMVPAYAISELKTAFQMGFMIFIPFLVIDIVVSSTLMAMGMMMLPPVMISLPF 227

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K++ FVL+DGW L+V++L+ SF
Sbjct: 228 KILLFVLVDGWYLVVKSLLLSF 249


>gi|20807873|ref|NP_623044.1| flagellar biosynthesis protein FliP [Thermoanaerobacter
           tengcongensis MB4]
 gi|20516437|gb|AAM24648.1| Flagellar biosynthesis/type III secretory pathway protein
           [Thermoanaerobacter tengcongensis MB4]
          Length = 221

 Score =  187 bits (476), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 101/225 (44%), Positives = 153/225 (68%), Gaps = 8/225 (3%)

Query: 21  SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
           S+L   +  P++LS S  IV      T+L++AP +LIM+T F R +IV + LR  +G+  
Sbjct: 4   SNLVSSVTSPSNLSTSLQIVLLL---TVLTLAPSILIMMTSFTRIVIVLAFLRNALGLQQ 60

Query: 81  VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
           +PPN V+I LALF+TFY+M+P         I+P +  QI +  A QR  +P   FM   T
Sbjct: 61  MPPNQVLIGLALFLTFYIMAPVGYDINNNAIKPYVEGQINQYEAYQRAIKPLKNFMLRQT 120

Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
           R+ DL+LF+++A        + K + +  R++IP+F+ISEL+ +FEIGF+I +PFL+ID+
Sbjct: 121 RQNDLALFVNLAK-----IKVDKVEDLPMRVVIPAFIISELKTAFEIGFIIYIPFLVIDI 175

Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IVA+++M+MGM MLPP  ISLPFKV+ F+L+DGW+L+V++L+  F
Sbjct: 176 IVASVLMSMGMFMLPPVLISLPFKVLLFILVDGWNLVVKSLILGF 220


>gi|89075523|ref|ZP_01161934.1| flagellar biosynthesis protein [Photobacterium sp. SKA34]
 gi|89048795|gb|EAR54366.1| flagellar biosynthesis protein [Photobacterium sp. SKA34]
          Length = 282

 Score =  187 bits (476), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 92/206 (44%), Positives = 137/206 (66%), Gaps = 5/206 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   + T L   P ++I++T F R ++V SILR  MG+   P N VII +ALF+TF+VM
Sbjct: 80  LQILALMTALGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFVM 139

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP +D+     +QP +N QIT   A+ +  +P   FM   TR KDL  F++M+ S+  + 
Sbjct: 140 SPVIDKINADAVQPYINEQITAKEALAKAEDPMRQFMLKQTRVKDLETFVNMSGSTADDP 199

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                  +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+I+MAMGMMML P  +
Sbjct: 200 QT-----VPLTVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASILMAMGMMMLSPMIV 254

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 255 SLPFKLMLFVLVDGWNLILSTLAGSF 280


>gi|221640808|ref|YP_002527070.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides KD131]
 gi|221161589|gb|ACM02569.1| Type III secretion system inner membrane P protein [Rhodobacter
           sphaeroides KD131]
          Length = 238

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 92/212 (43%), Positives = 137/212 (64%), Gaps = 5/212 (2%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           S++T  V+   + T+LS+ P L +M+TCFP  + V SILR  +G+   PPN++I+SLALF
Sbjct: 31  SLATRSVQLIAVITLLSLVPALAMMITCFPFIVTVLSILRQAIGLQQAPPNMLIVSLALF 90

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           +T+YVM P    +   GI PL  N++    A+   A PF  FM        L+     A 
Sbjct: 91  LTWYVMDPVFTEAWTKGIAPLTRNELDLPQALAAAAIPFRSFMAGRIDPDTLA-----AL 145

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
            + R         + + +L+PSF++SE++R+FEIGFLI LPFLIID++V+ ++M+MGMMM
Sbjct: 146 QALRPGPAAPPSEVSFSVLVPSFLLSEIQRAFEIGFLIYLPFLIIDLVVSAVLMSMGMMM 205

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +PP  +S+PFK+ FFV+ DGWSL+   LV+S+
Sbjct: 206 VPPAVVSMPFKLAFFVVADGWSLISGALVRSY 237


>gi|315648123|ref|ZP_07901224.1| flagellar biosynthetic protein FliP [Paenibacillus vortex V453]
 gi|315276769|gb|EFU40112.1| flagellar biosynthetic protein FliP [Paenibacillus vortex V453]
          Length = 250

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 89/194 (45%), Positives = 137/194 (70%), Gaps = 4/194 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +L+++T F R +IV   +RT +G    PPN V+I LALF+T +VM+PTL    ++ +
Sbjct: 59  APAILVLMTSFTRIVIVLGFVRTSLGTMQTPPNQVLIGLALFLTLFVMAPTLSSINDVAL 118

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           QP +  +I++T A+ +  +P   FM ++TREKDL LFM+   +    T     + I   +
Sbjct: 119 QPYLKGEISQTEALDKAQDPMKKFMFSHTREKDLLLFMNYTGAEKPET----YEDIPLTV 174

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           L+P+F ISEL+  F++GF+I +PFL+ID++VA+++MAMGMMMLPP  ISLPFK++ FVL+
Sbjct: 175 LVPAFAISELKTGFQMGFMIFIPFLVIDIVVASVLMAMGMMMLPPVMISLPFKILLFVLV 234

Query: 232 DGWSLLVENLVKSF 245
           DGW L+V++++ SF
Sbjct: 235 DGWYLVVKSMLMSF 248


>gi|227355990|ref|ZP_03840382.1| flagellar biosynthetic protein [Proteus mirabilis ATCC 29906]
 gi|227163978|gb|EEI48880.1| flagellar biosynthetic protein [Proteus mirabilis ATCC 29906]
          Length = 256

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 101/248 (40%), Positives = 153/248 (61%), Gaps = 11/248 (4%)

Query: 3   RYCFFALFLVT---PELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLI 57
           R+  FA  L+    P   FA+     V++ P       W   V+T    T L   P +L+
Sbjct: 13  RWPLFASVLILSLLPSHAFAQ--FPSVISHPLPGGGQNWSLPVQTLIFITALGFIPAVLL 70

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           M+T F R IIV  +LR  +G  S PPN V++ LALFMTF++M+P  D+  +    P   +
Sbjct: 71  MMTSFTRIIIVLGLLRNALGTPSAPPNQVVLGLALFMTFFIMAPVFDKIYQDAYLPFSED 130

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
           +IT   A+   ++P   FM   TRE DL+LF  +A +    T     D +  RIL+P+++
Sbjct: 131 KITFEQALDNGSQPLRQFMMQQTRETDLALFARLADAPAFET----RDSVPMRILVPAYI 186

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
            SEL+ +F+IGF+I +PFLIID++VA+++MA+GMMM+PP ++SLPFK++ FVL+DGW L+
Sbjct: 187 TSELKTAFQIGFMIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGWQLI 246

Query: 238 VENLVKSF 245
           + +L +SF
Sbjct: 247 LGSLAQSF 254


>gi|148976423|ref|ZP_01813129.1| flagellar biosynthesis protein P [Vibrionales bacterium SWAT-3]
 gi|145964246|gb|EDK29502.1| flagellar biosynthesis protein P [Vibrionales bacterium SWAT-3]
          Length = 309

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 94/218 (43%), Positives = 143/218 (65%), Gaps = 8/218 (3%)

Query: 28  NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87
           N   D SI+  I+    + T+L   P ++I++T F R ++V SILR  MG+   P N VI
Sbjct: 98  NGGEDYSINLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVI 154

Query: 88  ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147
           I +A+F+TF++MSP +++  E  +QP +N QIT   A      P   FM   TR KDL  
Sbjct: 155 IGIAIFLTFFIMSPVINQVNEQAVQPYLNEQITARQAFDVAQGPIKSFMLKQTRIKDLET 214

Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
           F++++ S     ++T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++M
Sbjct: 215 FVEISGS-----EVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLM 269

Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           AMGMMML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 270 AMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 307


>gi|256830495|ref|YP_003159223.1| flagellar biosynthetic protein FliP [Desulfomicrobium baculatum DSM
           4028]
 gi|256579671|gb|ACU90807.1| flagellar biosynthetic protein FliP [Desulfomicrobium baculatum DSM
           4028]
          Length = 231

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 94/217 (43%), Positives = 139/217 (64%), Gaps = 4/217 (1%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           PA+       +    + T+LS+AP  ++ VT F R IIVF  LR  MG   +PPN V+ S
Sbjct: 19  PAEPQKVAVALEIMALLTMLSMAPAFVLTVTSFTRIIIVFHFLRQAMGTQQMPPNQVLAS 78

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           LA+FMT  +M PT     +  +QP +N +I    A++R   P   F+  +TREKDLS+F 
Sbjct: 79  LAIFMTVVIMMPTGRTINDTALQPYLNEEIGYGEALERAETPLRTFLFKHTREKDLSVFF 138

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
            +             D +   IL+P+++ISEL+  F+IGFLI +PFLI+DM+VA+I+++M
Sbjct: 139 SITGLERPQ----NKDEVPTMILVPAYLISELKTGFQIGFLIYIPFLILDMVVASILLSM 194

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           GMMMLPP  +SLPFK++ FV++DGW+L++ +LV SF+
Sbjct: 195 GMMMLPPVMVSLPFKILLFVMVDGWNLIIGSLVNSFV 231


>gi|120554901|ref|YP_959252.1| flagellar biosynthesis protein FliP [Marinobacter aquaeolei VT8]
 gi|120324750|gb|ABM19065.1| flagellar biosynthetic protein FliP [Marinobacter aquaeolei VT8]
          Length = 253

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 88/206 (42%), Positives = 143/206 (69%), Gaps = 5/206 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   + T L+  P +L+M+T F R I+VF+ILR  +G+ + P N +++ LALF++ ++M
Sbjct: 51  LQILALMTALTFLPAMLMMMTSFTRIIVVFAILRQALGLQATPSNQILLGLALFLSIFIM 110

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P L+ +  +G+QP +  ++T   A++  ++PF  FM   TRE DL+LFM +A   +   
Sbjct: 111 KPVLEEANRVGLQPYLQEEVTSLEAVELASQPFRKFMLEQTREDDLALFMRIADVQYE-- 168

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
             T  D + + IL+P+F+ SEL+ +F+IGF++ +PFLIIDM+VA+++MAMGMMML P  I
Sbjct: 169 --TPQD-VSFWILMPAFVTSELKTAFQIGFILFIPFLIIDMVVASVLMAMGMMMLSPIII 225

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW+L++  L  S+
Sbjct: 226 SLPFKIMLFVLVDGWALIMGTLAASY 251


>gi|163738043|ref|ZP_02145459.1| flagellar biosynthetic protein FliP [Phaeobacter gallaeciensis
           BS107]
 gi|163742561|ref|ZP_02149947.1| flagellar biosynthetic protein FliP [Phaeobacter gallaeciensis
           2.10]
 gi|161384146|gb|EDQ08529.1| flagellar biosynthetic protein FliP [Phaeobacter gallaeciensis
           2.10]
 gi|161388659|gb|EDQ13012.1| flagellar biosynthetic protein FliP [Phaeobacter gallaeciensis
           BS107]
          Length = 247

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 93/212 (43%), Positives = 136/212 (64%), Gaps = 3/212 (1%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           SIS   ++   + T+LS+AP LLIM+TCFP  + V SILR  +G+   PPN+++ISLALF
Sbjct: 37  SISARSIQLILLITVLSLAPGLLIMITCFPFLVTVLSILRQAIGLQQAPPNMLMISLALF 96

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           +T++VM P    +   GI PL+  Q+   T ++R  +PF VFM       D   F  +A 
Sbjct: 97  LTYFVMEPVFTEAWTTGINPLIEEQLDVETGLERALQPFRVFMAARL---DPDTFYAIAD 153

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
                  I          L+ SFM+SE+ R+F++GFL+ LPFL+ID++VA ++M+MGMMM
Sbjct: 154 LRPSTAGIDPTADAPLSTLVSSFMLSEIARAFQVGFLVFLPFLVIDLVVAAVLMSMGMMM 213

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +PP  +S+PFK+ FFV+ DGWSL+   LV+S+
Sbjct: 214 VPPAVVSMPFKLAFFVVADGWSLIASALVRSY 245


>gi|332799191|ref|YP_004460690.1| flagellar biosynthetic protein FliP [Tepidanaerobacter sp. Re1]
 gi|332696926|gb|AEE91383.1| flagellar biosynthetic protein FliP [Tepidanaerobacter sp. Re1]
          Length = 258

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 95/201 (47%), Positives = 139/201 (69%), Gaps = 3/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + TILS+AP +L ++T F R IIV S +R G+G+  VPP  V+I LALF+T +VM+P   
Sbjct: 60  LLTILSLAPSILTLLTSFTRTIIVLSFVRNGLGVQQVPPTQVLIGLALFITVFVMAPVWT 119

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
                 IQP MN +I  + A++R   P   FM   TREKDL+LF+   H +   T +   
Sbjct: 120 EINSEAIQPYMNQEIDTSEALRRSQIPLRNFMFRQTREKDLALFV---HYAKLETPLNTL 176

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D I   +LIPSF+ISEL+ +F++GF+I +PFL+IDMIV++ +M+MGM+MLPP  ISLPFK
Sbjct: 177 DDIPTYVLIPSFIISELKTAFQMGFIIFIPFLVIDMIVSSTLMSMGMLMLPPIMISLPFK 236

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FV++DGW+L++ +++  F
Sbjct: 237 ILLFVMVDGWNLVINSILAGF 257


>gi|90411033|ref|ZP_01219047.1| flagellar biosynthesis protein [Photobacterium profundum 3TCK]
 gi|90328246|gb|EAS44557.1| flagellar biosynthesis protein [Photobacterium profundum 3TCK]
          Length = 284

 Score =  187 bits (474), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 96/214 (44%), Positives = 141/214 (65%), Gaps = 8/214 (3%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D S++  I+   G+ T L   P ++I++T F R ++V SILR  MG+   P N VII +A
Sbjct: 77  DYSVTLQIL---GLMTALGFLPAIVILMTSFTRIVVVLSILRQAMGLQQTPSNQVIIGIA 133

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           LFMTF+VMSP +D+     +QP +N +IT   A +    P   FM   TR KDL  F++M
Sbjct: 134 LFMTFFVMSPVIDKVNIDAVQPYINEEITAAQAFETAQVPLRQFMLKQTRVKDLESFVNM 193

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           + S+      T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM
Sbjct: 194 SGSTA-----TAPEDVPITVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 248

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 249 MMLSPMIVSLPFKLMLFVLVDGWNLILTTLAGSF 282


>gi|269961630|ref|ZP_06175992.1| Flagellar biosynthetic protein fliP [Vibrio harveyi 1DA3]
 gi|269833671|gb|EEZ87768.1| Flagellar biosynthetic protein fliP [Vibrio harveyi 1DA3]
          Length = 289

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 92/214 (42%), Positives = 140/214 (65%), Gaps = 8/214 (3%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D S++  I+    + T+L   P ++I++T F R ++V SILR  MG+   P N VII +A
Sbjct: 82  DYSVTLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 138

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           LF+TF++MSP L+   +  +QP +N Q+T   A      P   FM   TR KDL  F++M
Sbjct: 139 LFLTFFIMSPVLNEINDQAVQPYLNEQVTAREAFDAAQAPMKAFMLKQTRIKDLETFVNM 198

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           +       ++T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM
Sbjct: 199 SGE-----EVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 253

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 254 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287


>gi|319944172|ref|ZP_08018448.1| flagellar biosynthetic protein FliP [Lautropia mirabilis ATCC
           51599]
 gi|319742467|gb|EFV94878.1| flagellar biosynthetic protein FliP [Lautropia mirabilis ATCC
           51599]
          Length = 245

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 98/240 (40%), Positives = 153/240 (63%), Gaps = 3/240 (1%)

Query: 8   ALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRF 65
           AL    P  V+A+++L       AD   +TW V  +T   F+ LS  P +L+++T F R 
Sbjct: 5   ALLAGAPLDVWAQATLSLQSTAAAD-GGTTWSVPVQTLLFFSALSFIPAVLLLMTSFTRI 63

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
           IIV S+LR  +G+ + PPN V++ ++LF+T ++MSPTLDR      QPL   +I   TA+
Sbjct: 64  IIVLSLLRQALGLQASPPNQVLVGISLFLTAFIMSPTLDRIYTEAYQPLAEKRIDFETAL 123

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
           Q+ + P   FM   TR  DL LF  +A     +        + ++ ++P+F+ISEL+ +F
Sbjct: 124 QKGSVPLRDFMLKQTRASDLELFARLARVKAPDDKPLSAQDMPFKAIVPAFVISELKTAF 183

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +IGF+I +PF++ID+I A+++M++GMMM+ P  ++LPFK++ FVL DGW+LLV +LV SF
Sbjct: 184 QIGFMIFIPFILIDLICASVLMSLGMMMVSPVLVALPFKLVLFVLADGWNLLVGSLVASF 243


>gi|260772332|ref|ZP_05881248.1| flagellar biosynthesis protein FliP [Vibrio metschnikovii CIP
           69.14]
 gi|260611471|gb|EEX36674.1| flagellar biosynthesis protein FliP [Vibrio metschnikovii CIP
           69.14]
          Length = 299

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 94/214 (43%), Positives = 143/214 (66%), Gaps = 8/214 (3%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D SI+  I+    + T+L   P ++I++T F R ++V SILR  MG+   P N VII +A
Sbjct: 92  DYSINLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 148

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           +F+TF++MSP L++  +  +QP +N QI+   A     +P   FM   TR KDL  F+++
Sbjct: 149 IFLTFFIMSPVLNQINDQAVQPYLNEQISARQAFDLAQDPMKSFMLKQTRLKDLETFVNI 208

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           A S+ +N +      +   ILIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM
Sbjct: 209 AGSNAQNPE-----DVSMAILIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 263

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 264 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297


>gi|311695203|gb|ADP98076.1| flagellar biosynthesis protein FliP [marine bacterium HP15]
          Length = 258

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 88/206 (42%), Positives = 143/206 (69%), Gaps = 5/206 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   + T L+  P +L+M+T F R I+VF+ILR  +G+ S P N +++ LALF++ ++M
Sbjct: 56  LQILALMTALTFLPAMLMMMTSFTRIIVVFAILRQAIGLQSTPSNQILLGLALFLSIFIM 115

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P L+ +  + +QP M  ++T   A++  ++PF  FM   TRE DL+LFM ++ + +   
Sbjct: 116 KPVLEEANRVALQPYMQEEVTSLEAVELASQPFRKFMLEQTRESDLALFMRISDTQYE-- 173

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
             T  D + + IL+P+F+ SEL+ +F+IGF++ +PFLIIDM+VA+++MAMGMMML P  I
Sbjct: 174 --TPQD-VSFWILMPAFVTSELKTAFQIGFILFIPFLIIDMVVASVLMAMGMMMLSPIII 230

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW+L++  L  S+
Sbjct: 231 SLPFKIMLFVLVDGWALIMGTLAASY 256


>gi|308273529|emb|CBX30131.1| Flagellar biosynthetic protein fliP [uncultured Desulfobacterium
           sp.]
          Length = 225

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 96/217 (44%), Positives = 146/217 (67%), Gaps = 7/217 (3%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P  +S+   +++   + T+LS+AP +LIM+T F R  IVFS LR  +G    P N +I  
Sbjct: 16  PEQVSV---LIQILFLLTVLSLAPAILIMMTPFTRLAIVFSFLRQALGTQQTPSNQIIAG 72

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           L+LF+TF++M P         +QP +  +I++ TA++    P   FM   TREKDL++F+
Sbjct: 73  LSLFITFFIMMPQWQEINNNALQPYLEKKISQETALKEAMIPIRKFMFRQTREKDLAIFV 132

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
            M+ S   N+     + I    LIP+F+ISEL+ +F IGF++ +PFLIIDM+VA+++++M
Sbjct: 133 KMSKSEKPNSP----EDISMTTLIPAFVISELKTAFIIGFVLFVPFLIIDMVVASVLLSM 188

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           GMMMLPP  ISLPFK++ FVL+DGW+L+V ++VKSF+
Sbjct: 189 GMMMLPPILISLPFKLMLFVLVDGWNLIVGSMVKSFV 225


>gi|34558376|ref|NP_908191.1| flagellar biosynthesis protein FliP [Wolinella succinogenes DSM
           1740]
 gi|34484095|emb|CAE11091.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Wolinella succinogenes]
          Length = 247

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 96/194 (49%), Positives = 137/194 (70%), Gaps = 4/194 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP L++++T F R IIVFS LRT MG    PP  +++SLA+ +TF++M P   +S E+GI
Sbjct: 57  APSLVLVMTSFTRLIIVFSFLRTAMGTQQSPPTQLLVSLAMVLTFFIMEPIAKQSYEIGI 116

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           +P +  +I    A  +   PF  FM  NTREKDL+LF  +    +  T     + I   +
Sbjct: 117 KPYLAKEIPYDVAFVKSVGPFKEFMIRNTREKDLALFYRIRGMENPQTI----EDIPLTM 172

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           +IP+FMISE++ +F+IGFLI LPFL+IDM++++I+MAMGMMMLPP  ISLPFK++ FVL+
Sbjct: 173 VIPAFMISEMKTAFQIGFLIYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFVLV 232

Query: 232 DGWSLLVENLVKSF 245
           DG++LLV +LV+SF
Sbjct: 233 DGFNLLVGSLVESF 246


>gi|163801855|ref|ZP_02195752.1| flagellar biosynthesis protein P [Vibrio sp. AND4]
 gi|159174363|gb|EDP59167.1| flagellar biosynthesis protein P [Vibrio sp. AND4]
          Length = 289

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 95/214 (44%), Positives = 139/214 (64%), Gaps = 8/214 (3%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D S++  I+    + T+L   P ++I++T F R ++V SILR  MG+   P N VII +A
Sbjct: 82  DYSVTLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 138

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           LF+TF+VMSP L+   +  IQP +N Q+T   A      P   FM   TR KDL  F+DM
Sbjct: 139 LFLTFFVMSPVLNEINDNAIQPYLNEQLTARQAFDTAQVPMKAFMLKQTRIKDLETFVDM 198

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           +        +T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM
Sbjct: 199 SGE-----QVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 253

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 254 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287


>gi|297584051|ref|YP_003699831.1| flagellar biosynthetic protein FliP [Bacillus selenitireducens
           MLS10]
 gi|297142508|gb|ADH99265.1| flagellar biosynthetic protein FliP [Bacillus selenitireducens
           MLS10]
          Length = 226

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 92/194 (47%), Positives = 132/194 (68%), Gaps = 4/194 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +LI++T F R +IV S +R G+    +PPN VII LALF+TF+VM+PT     E  +
Sbjct: 37  APAILILMTSFTRIVIVLSFVRNGLATQQMPPNQVIIGLALFLTFFVMAPTFSEVNEAAL 96

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           QPL +  I++  A      P   FM  +TRE+DL+LFM  A      +     + I    
Sbjct: 97  QPLFDGDISQEEAFDEATIPMKEFMAQHTRERDLALFMGYAGQERPES----LEDIPLTS 152

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           L+P+F+ISEL+ +F+IGF+I +PFL+IDM+VA+++M+MGMMMLPP  I+LPFKV+ FVL+
Sbjct: 153 LVPAFVISELKTAFQIGFMIFVPFLVIDMVVASVLMSMGMMMLPPVMIALPFKVLLFVLV 212

Query: 232 DGWSLLVENLVKSF 245
           DGW L+V +L+ +F
Sbjct: 213 DGWHLVVRSLLYTF 226


>gi|330828809|ref|YP_004391761.1| flagellar biosynthetic protein FliP [Aeromonas veronii B565]
 gi|328803945|gb|AEB49144.1| Flagellar biosynthetic protein FliP [Aeromonas veronii B565]
          Length = 257

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 92/206 (44%), Positives = 138/206 (66%), Gaps = 5/206 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   + T LS  P ++IM+T F R I+V  ILR  +G+   P N V+I +ALFM+F++M
Sbjct: 52  LQVLALMTALSFLPAMVIMMTSFTRIIVVLGILRQAIGLQQSPSNQVLIGIALFMSFFIM 111

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP LDR  +  +QP +   I    A++R   P   FM   TR KDL+ FM++A     N 
Sbjct: 112 SPVLDRINDEALQPYLAETIQAKEALERAELPIHQFMLAQTRIKDLNTFMEIA-----NV 166

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            + K   +  R+LIP+F+ SEL+ +F+IGF++ LPFL+ID++VA+I+MAMGMMML P  +
Sbjct: 167 QVEKPADVPLRVLIPAFVTSELKTAFQIGFMLFLPFLVIDLVVASILMAMGMMMLSPMIV 226

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FV++DGW+L++ +L  SF
Sbjct: 227 SLPFKLMLFVMVDGWNLILGSLANSF 252


>gi|329901241|ref|ZP_08272766.1| Flagellar biosynthesis protein fliP [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549173|gb|EGF33765.1| Flagellar biosynthesis protein fliP [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 251

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/193 (46%), Positives = 131/193 (67%), Gaps = 4/193 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P  L+M+T F R IIV S+LR  +G  S PPN V++ LALF+T +VM P  D+       
Sbjct: 62  PAALLMMTSFTRIIIVLSLLRQALGTQSAPPNQVMVGLALFLTLFVMGPVFDKIYADAYL 121

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           PL  N+I  T A++R A P   FM   TR+ DL+L++ M++S      +   D +  RIL
Sbjct: 122 PLQENKINMTQAMERGAAPLKAFMMKQTRQADLALYVKMSNSPA----LQGPDDVPLRIL 177

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           +P+F+ SEL+ +F+I F I +PFLIIDM+VA+++M+MGMMM+ P+ +SLPFK++ FVL+D
Sbjct: 178 VPAFITSELKTAFQISFAIFIPFLIIDMVVASVLMSMGMMMVSPSIVSLPFKLMLFVLVD 237

Query: 233 GWSLLVENLVKSF 245
           GW LL+ +L +SF
Sbjct: 238 GWQLLIGSLAQSF 250


>gi|152997437|ref|YP_001342272.1| flagellar biosynthesis protein FliP [Marinomonas sp. MWYL1]
 gi|150838361|gb|ABR72337.1| flagellar biosynthetic protein FliP [Marinomonas sp. MWYL1]
          Length = 245

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 102/247 (41%), Positives = 159/247 (64%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIP-ADLSIS-TWIVRTFGIFTILSIAPILLIM 58
           MIR+    L LV P   +A+  L  V  +  AD S   T  ++   I T L++ P  L+M
Sbjct: 1   MIRFVSL-LLLVFPAFSWAEVGLPAVKVVTNADGSQDYTVSLQILFIMTALTLLPAALMM 59

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R I+V +ILR  +G+   P N ++I +ALF+T ++M+PTLDR  E+ +QP +  +
Sbjct: 60  MTAFTRIIVVLAILRQAIGLQQTPSNQIMIGMALFLTLFIMTPTLDRVNEVALQPYLKEE 119

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           +T   A++  + P   FM   TRE D++LF+ +A    +   I   + + + IL+P+F+ 
Sbjct: 120 MTSIQAVEAASVPVRDFMLAQTREDDIALFVKLAG---KEGTIQSMETLPFTILMPAFVT 176

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF+I +PFLI+DM+VA+++MAMGMMML P  ISLPFK++ FV++DGWS+++
Sbjct: 177 SELKTAFQIGFMIFIPFLIVDMVVASVLMAMGMMMLSPIIISLPFKIMLFVMVDGWSMIM 236

Query: 239 ENLVKSF 245
             L  SF
Sbjct: 237 GTLAASF 243


>gi|326319061|ref|YP_004236733.1| flagellar biosynthetic protein FliP [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375897|gb|ADX48166.1| flagellar biosynthetic protein FliP [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 259

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 95/207 (45%), Positives = 135/207 (65%), Gaps = 4/207 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++T   FT LS  P LL+M+T F R +IV S++R  +G  S PPN VII L+LF+TF+VM
Sbjct: 56  IQTLLFFTALSFLPALLLMMTGFTRIVIVLSLIRQAIGTQSAPPNQVIIGLSLFLTFFVM 115

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            PT DR       P  NN IT   A++R   P   FM   TR+ D +LF  +A      T
Sbjct: 116 GPTFDRVYADAYLPYSNNTITFEQAVERAEAPMRSFMLKQTRQSDFALFARLAKLPSGAT 175

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
             T       R+L+P+F+ SEL+ +F+IGF+I +PFL+IDM+V++I+M++GMMML P  +
Sbjct: 176 AETA----PMRVLVPAFVTSELKSAFQIGFMIFIPFLVIDMVVSSILMSLGMMMLSPVLV 231

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +LPFK++ FVL DGW+LL+ +L  SF+
Sbjct: 232 ALPFKLMLFVLADGWNLLLGSLAASFV 258


>gi|90021817|ref|YP_527644.1| flagellar biosynthesis protein FliP [Saccharophagus degradans 2-40]
 gi|89951417|gb|ABD81432.1| flagellar biosynthetic protein FliP [Saccharophagus degradans 2-40]
          Length = 280

 Score =  186 bits (472), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 91/199 (45%), Positives = 135/199 (67%), Gaps = 4/199 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T L+  P +LIM+T F R IIVFSILR  +G+   P N ++I L LF+TF++M+P +++ 
Sbjct: 84  TALTFLPAILIMMTAFTRIIIVFSILRQALGLQQSPSNQILIGLTLFLTFFIMTPVIEKV 143

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
            +  +QP +  QIT   A++   +P   FM  NTRE DL LF  +A      T     + 
Sbjct: 144 NQNALQPYIAEQITAQQALEETKKPVRKFMLANTRESDLELFFRIASLEPVATP----EE 199

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
           I + +L+PSF+ SEL+ +F+IGF++ +PFL+ID++VA+++MAMGMMML P  ISLPFK++
Sbjct: 200 IPFSVLVPSFITSELKTAFQIGFILFIPFLVIDIVVASVLMAMGMMMLSPLIISLPFKIM 259

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FVL+DGW+L++  L  SF
Sbjct: 260 LFVLVDGWALIIGTLAASF 278


>gi|187935306|ref|YP_001885056.1| flagellar biosynthetic protein FliP [Clostridium botulinum B str.
           Eklund 17B]
 gi|187723459|gb|ACD24680.1| flagellar biosynthetic protein FliP [Clostridium botulinum B str.
           Eklund 17B]
          Length = 259

 Score =  186 bits (472), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/200 (45%), Positives = 140/200 (70%), Gaps = 3/200 (1%)

Query: 46  FTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDR 105
           FTIL++ P ++IM+T F R +IVFS +++ MG+    PN ++  LALF+T ++MSP  + 
Sbjct: 62  FTILAVLPSIVIMLTSFTRIVIVFSFIKSAMGVQQAIPNQILTGLALFLTIFIMSPVYNE 121

Query: 106 SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165
                 QP +   IT+  AI+  ++P   FM   TREKDL LF+++   ++ N +    +
Sbjct: 122 VNTKAFQPYVEQSITQEEAIEIGSKPIKDFMLKQTREKDLELFVEI---NNVNKEELTRE 178

Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225
            + +  LIP+F ISEL+ +F++GFLI LPF++IDM+VA+++M+MGMMMLPP  +SLPFK+
Sbjct: 179 SVPFTTLIPAFAISELKTAFQMGFLIYLPFIVIDMVVASVLMSMGMMMLPPAMVSLPFKL 238

Query: 226 IFFVLIDGWSLLVENLVKSF 245
           + FV++DGW LLV++L+ SF
Sbjct: 239 LLFVMVDGWYLLVKSLIMSF 258


>gi|146307834|ref|YP_001188299.1| flagellar biosynthesis protein FliP [Pseudomonas mendocina ymp]
 gi|145576035|gb|ABP85567.1| flagellar biosynthetic protein FliP [Pseudomonas mendocina ymp]
          Length = 261

 Score =  186 bits (472), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 93/201 (46%), Positives = 135/201 (67%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           I T LS  P  ++++T F R IIVFSILR  +G+   P N +++ LALF+T ++M+P  D
Sbjct: 62  IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILVGLALFLTLFIMAPIFD 121

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           R     +QP +N +I    A+ R   P   FM   TRE DL+LF+ ++    + TD+   
Sbjct: 122 RINTDALQPYLNEEIVAQEALTRAEGPIRDFMLAQTRESDLALFVRLS----KRTDLAGV 177

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           + +   IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA+I+MAMGMMML P  ISLPFK
Sbjct: 178 EDVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASILMAMGMMMLSPLIISLPFK 237

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW+L++  L  SF
Sbjct: 238 IMLFVLVDGWALIMGTLAASF 258


>gi|302670736|ref|YP_003830696.1| flagellar biosynthetic protein FliP [Butyrivibrio proteoclasticus
           B316]
 gi|302395209|gb|ADL34114.1| flagellar biosynthetic protein FliP [Butyrivibrio proteoclasticus
           B316]
          Length = 314

 Score =  186 bits (472), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 93/199 (46%), Positives = 136/199 (68%), Gaps = 4/199 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T++S+AP LL+M+T F R I+     RT +G  + PPNLV++ +ALFMT ++M PTL   
Sbjct: 119 TLISLAPTLLVMMTSFTRIIVALHFTRTAIGTQTSPPNLVMLGIALFMTLFIMQPTLTTV 178

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
               + P  N ++ +    +   +PF  FM   T++KD+ LFM++           + D 
Sbjct: 179 YNEAVIPFENGEMDQQEFFEEAMDPFRQFMYGQTQKKDVILFMNIDGIEWDG----ELDS 234

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
           I   +LIPSF++SELR +F IGF+I +PF++IDM+VA+++M+MGMMMLPPT+ISLPFK++
Sbjct: 235 IPNVVLIPSFIVSELRTAFIIGFMIYIPFIVIDMVVASVLMSMGMMMLPPTTISLPFKIL 294

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FVL DGWSL++ NLVKSF
Sbjct: 295 LFVLADGWSLIIGNLVKSF 313


>gi|34498582|ref|NP_902797.1| flagellar biosynthesis protein FliP [Chromobacterium violaceum ATCC
           12472]
 gi|34104436|gb|AAQ60794.1| probable flagellar biosynthetic protein fliP [Chromobacterium
           violaceum ATCC 12472]
          Length = 250

 Score =  186 bits (472), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 88/199 (44%), Positives = 137/199 (68%), Gaps = 4/199 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T L+  P +++M+T F R +IV S+LR  +G    PPN VI+ LALF+T +VM PT D+ 
Sbjct: 53  TALTFIPAMMLMMTAFTRIVIVLSLLRQALGTTQSPPNQVIVGLALFLTLFVMGPTFDQV 112

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
                 P  +++I+   A+   ++P   FM   TREKDL+ F++++ S    +     + 
Sbjct: 113 YAKAWVPFSDDKISFNQALDEGSKPMKAFMLRQTREKDLAFFIEISQSPKPQS----KEE 168

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
           +  + LIP+F +SEL+ +F+IGF+I +PF+IID++VA+I+MAMGMMM+ P +ISLPFK++
Sbjct: 169 VSMKTLIPAFAVSELKTAFQIGFMIFIPFMIIDLVVASILMAMGMMMVSPVTISLPFKMM 228

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FVL+DGW+LL+ +LV+SF
Sbjct: 229 LFVLVDGWTLLMGSLVQSF 247


>gi|229591840|ref|YP_002873959.1| flagellar biosynthesis protein FliP [Pseudomonas fluorescens SBW25]
 gi|229363706|emb|CAY51090.1| flagellar biosynthesis [Pseudomonas fluorescens SBW25]
          Length = 247

 Score =  186 bits (472), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/201 (44%), Positives = 133/201 (66%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           I T LS  P  ++++T F R IIVFSILR  +G+   P N ++  +ALF+T ++M+P  D
Sbjct: 48  IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTLFIMAPVFD 107

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +  +  +QP +  ++T   AI +   P   FM + TR  DL LFM ++    + TDI   
Sbjct: 108 KVNQQALQPYLAEKMTAQDAIDKAQGPIKDFMLSQTRSSDLELFMRLS----KRTDIATP 163

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D     IL+P+F+ SEL+ +F+IGF+I +PFLIID++VA+++MAMGMMML P  ISLPFK
Sbjct: 164 DQAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK 223

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW+L++  L  SF
Sbjct: 224 IMLFVLVDGWALIIGTLASSF 244


>gi|27904581|ref|NP_777707.1| putative bifunctional flagellar biosynthesis protein FliO/FliP
           [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
 gi|46395829|sp|Q89AZ2|FLIP_BUCBP RecName: Full=Flagellar biosynthetic protein fliP
 gi|27903978|gb|AAO26812.1| flagellar biosynthetic protein FliP [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 360

 Score =  186 bits (472), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 97/243 (39%), Positives = 157/243 (64%), Gaps = 10/243 (4%)

Query: 5   CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCF 62
           C F LF  +    +A + + DV++  +      W +  +T    T L+  P +L+M+T F
Sbjct: 124 CVFLLFCPS----YAYAGIPDVISHTSSDGGQIWSIPIQTLVFITSLTFIPTVLLMMTSF 179

Query: 63  PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122
            R +IVFS+LR+ +G    PPN +++ L+L +TF++M+P  D+  +    P   ++I+  
Sbjct: 180 SRIVIVFSLLRSALGTPYSPPNQILVGLSLILTFFIMAPIFDKIYQDSYLPFSEDKISID 239

Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182
           TAI R A+P   FM N TR+ DL  F  +A+ S      ++ + I  R+L+PSF+ SEL+
Sbjct: 240 TAIVRGAKPLHKFMVNQTRQVDLEFFSKLANIS----TFSRKEEIPMRVLLPSFITSELK 295

Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
            +F+IGF I +PFLIID++V++++M++GMMM+PP++ISLPFK++ FVL+DGW LL+ +L 
Sbjct: 296 TAFQIGFTIFIPFLIIDLVVSSVLMSLGMMMVPPSTISLPFKLMLFVLVDGWQLLITSLT 355

Query: 243 KSF 245
            SF
Sbjct: 356 HSF 358


>gi|326204610|ref|ZP_08194466.1| flagellar biosynthetic protein FliP [Clostridium papyrosolvens DSM
           2782]
 gi|325985177|gb|EGD46017.1| flagellar biosynthetic protein FliP [Clostridium papyrosolvens DSM
           2782]
          Length = 243

 Score =  186 bits (472), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 96/204 (47%), Positives = 135/204 (66%), Gaps = 5/204 (2%)

Query: 46  FTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDR 105
            T+LSIAP +LIM+T F R II+ S LR  +G   +PPN V+I LALF+T +VMSP L  
Sbjct: 39  LTVLSIAPSILIMMTGFTRIIIILSFLRNALGTQQMPPNQVLIGLALFITLFVMSPVLSD 98

Query: 106 SIEMGIQPLMNNQITETTAIQRVAEPF--WVFMR--NNTREKDLSLFMDMAHSSHRNTDI 161
             E   QP  N +IT+  AI + ++    W+  +  +N REKDL LFM +         +
Sbjct: 99  INENAFQPYTNGKITQQQAIDKSSQSIKTWMVKQIFSNKREKDLELFMTLG-GQKEPVKV 157

Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
                +   ++ P+F+ISEL  +F+ GFLI LPFLIIDM+V++ +M+MGMMMLPP  ISL
Sbjct: 158 QDASKLSLTMVAPAFLISELTVAFKFGFLIFLPFLIIDMVVSSALMSMGMMMLPPIMISL 217

Query: 222 PFKVIFFVLIDGWSLLVENLVKSF 245
           PFK++ FVL+DGWS+L ++++ SF
Sbjct: 218 PFKILLFVLVDGWSMLTQSIITSF 241


>gi|291286235|ref|YP_003503051.1| flagellar biosynthetic protein FliP [Denitrovibrio acetiphilus DSM
           12809]
 gi|290883395|gb|ADD67095.1| flagellar biosynthetic protein FliP [Denitrovibrio acetiphilus DSM
           12809]
          Length = 243

 Score =  186 bits (472), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 95/218 (43%), Positives = 144/218 (66%), Gaps = 7/218 (3%)

Query: 28  NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87
           N P D++++  I+    + T +SIAP  L+++T F R +IVFS+LRT MG   +PPN V+
Sbjct: 32  NSPQDVAVTIQIML---LMTFISIAPGFLVLMTSFTRIVIVFSLLRTAMGTSQMPPNQVL 88

Query: 88  ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147
           +SLAL +TFY+M+P        G+ P     IT    +  V +P   FM  NTR++D+  
Sbjct: 89  LSLALILTFYIMNPVFTEMYNKGLGPYFEETITFQEMVSEVKKPLRKFMLYNTRKQDVRT 148

Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
           F+ ++  +   T     D I   +L+ SF++SEL  +F++GFL+ LPFLIID +VA++++
Sbjct: 149 FLSISGEARPKT----ADDIPDLVLLSSFVVSELTTAFQMGFLLFLPFLIIDFVVASVLL 204

Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +MGMMMLPP  IS+PFK++ FVL+DGW L+V ++VKSF
Sbjct: 205 SMGMMMLPPVMISVPFKIMLFVLVDGWGLIVTSIVKSF 242


>gi|238794007|ref|ZP_04637625.1| Flagellar biosynthetic protein fliP [Yersinia intermedia ATCC
           29909]
 gi|238726639|gb|EEQ18175.1| Flagellar biosynthetic protein fliP [Yersinia intermedia ATCC
           29909]
          Length = 273

 Score =  186 bits (472), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 98/231 (42%), Positives = 149/231 (64%), Gaps = 8/231 (3%)

Query: 17  VFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74
           VFA+  L  +++ P      +W   V+T    T LS  P  L+M+T F R IIV  +LR 
Sbjct: 47  VFAQ--LPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLLRN 104

Query: 75  GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134
            +G  S PPN V++ LALF+TF++MSP  D+  +    P   ++I+   AI + A+P   
Sbjct: 105 ALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAIDKGAQPLRE 164

Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
           FM   TRE DL+L+  +A+       +   + +  RIL+P+++ SEL+ +F+IGF + +P
Sbjct: 165 FMLRQTRESDLALYARLANLP----PLEGPEVVPMRILLPAYVTSELKTAFQIGFTVFIP 220

Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           FLIID++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 221 FLIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 271


>gi|218288310|ref|ZP_03492609.1| flagellar biosynthetic protein FliP [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218241669|gb|EED08842.1| flagellar biosynthetic protein FliP [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 272

 Score =  186 bits (471), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 85/188 (45%), Positives = 129/188 (68%)

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           ++TCF R I+V S +R  + + + PPN V++ LALF+T +VM PTL ++    +QP +  
Sbjct: 83  LMTCFTRVIVVLSFVRNALSLQTSPPNQVLVGLALFITLFVMQPTLQQANTQALQPYLRG 142

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
           QI++T AI+R   PF VFM   TR +DL LF+   H +         + I    L+P+F 
Sbjct: 143 QISQTAAIERAEAPFKVFMAKQTRAQDLELFLAYRHETLTAEMERHPEAIAMSALVPAFT 202

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
           +SEL+ +F+IGF+I LPFL+ID++V+T +M+MGMMMLPP  ISLPFKV+ FV+++GW L+
Sbjct: 203 LSELQTAFQIGFMIYLPFLVIDLVVSTTLMSMGMMMLPPVMISLPFKVLLFVMVNGWYLV 262

Query: 238 VENLVKSF 245
           V++L+  +
Sbjct: 263 VKSLLAGY 270


>gi|28899013|ref|NP_798618.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260365241|ref|ZP_05777798.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus K5030]
 gi|260878791|ref|ZP_05891146.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus
           AN-5034]
 gi|260897386|ref|ZP_05905882.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus
           Peru-466]
 gi|28807232|dbj|BAC60502.1| polar flagellar assembly protein FliP [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308088270|gb|EFO37965.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus
           Peru-466]
 gi|308094309|gb|EFO44004.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus
           AN-5034]
 gi|308115428|gb|EFO52968.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus K5030]
          Length = 289

 Score =  186 bits (471), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 94/214 (43%), Positives = 139/214 (64%), Gaps = 8/214 (3%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D S++  I+    + T+L   P ++I++T F R ++V SILR  MG+   P N VII +A
Sbjct: 82  DYSVTLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 138

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           LF+TF+VMSP L+   +  IQP +N Q+T   A      P   FM   TR KDL  F++M
Sbjct: 139 LFLTFFVMSPVLNEINDTAIQPYLNEQVTAREAFDAAQVPMKAFMLKQTRIKDLETFVNM 198

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           +        +T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM
Sbjct: 199 SGE-----QVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 253

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 254 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287


>gi|312962263|ref|ZP_07776755.1| flagellar biosynthetic protein FliP [Pseudomonas fluorescens WH6]
 gi|311283600|gb|EFQ62189.1| flagellar biosynthetic protein FliP [Pseudomonas fluorescens WH6]
          Length = 247

 Score =  186 bits (471), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 90/201 (44%), Positives = 133/201 (66%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           I T LS  P  ++++T F R IIVFSILR  +G+   P N ++  +ALF+T ++M+P  D
Sbjct: 48  IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFD 107

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +  +  +QP +  ++T   AI +   P   FM + TR  DL LFM ++    + TDI   
Sbjct: 108 KVNQQALQPYLAEKMTAQDAIDKAQGPIKDFMLSQTRSSDLELFMRLS----KRTDIASP 163

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D     IL+P+F+ SEL+ +F+IGF+I +PFLIID++VA+++MAMGMMML P  ISLPFK
Sbjct: 164 DQAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK 223

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW+L++  L  SF
Sbjct: 224 IMLFVLVDGWALIIGTLASSF 244


>gi|304311110|ref|YP_003810708.1| Flagellar transport protein FliP [gamma proteobacterium HdN1]
 gi|301796843|emb|CBL45055.1| Flagellar transport protein FliP [gamma proteobacterium HdN1]
          Length = 253

 Score =  186 bits (471), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 91/212 (42%), Positives = 139/212 (65%), Gaps = 5/212 (2%)

Query: 36  STWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
            +W V  +  G  T+L++ P +++M+T F R IIVFSILR  +G+   P N +++ LALF
Sbjct: 43  ESWSVSLQVLGFMTVLTLLPAIVLMMTAFTRIIIVFSILRQAIGLQQAPSNQILVGLALF 102

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           +T +VM P  D    + ++P    +I    AIQ  + P   FM    RE DL+LF+++A 
Sbjct: 103 LTLFVMRPVFDEINRVAVEPYQAEKIDGMQAIQAASGPLRKFMMAQIREADLTLFIELAG 162

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
              R  ++   D +   I+IP+F+ SEL+ +F+IGFL+ +PFLIIDM+VA+++MAMGMMM
Sbjct: 163 EQDRYHEV---DEVPLTIIIPAFITSELKTAFQIGFLLFIPFLIIDMVVASVLMAMGMMM 219

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           L P  ISLPFK++ FV +DGW+++V +L  S+
Sbjct: 220 LSPMIISLPFKIMLFVFVDGWAMVVGSLAASY 251


>gi|330502776|ref|YP_004379645.1| flagellar biosynthesis protein FliP [Pseudomonas mendocina NK-01]
 gi|328917062|gb|AEB57893.1| flagellar biosynthesis protein FliP [Pseudomonas mendocina NK-01]
          Length = 261

 Score =  186 bits (471), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 93/201 (46%), Positives = 135/201 (67%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           I T LS  P  ++++T F R IIVFSILR  +G+   P N +++ LALF+T ++M+P  D
Sbjct: 62  IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILVGLALFLTMFIMAPVFD 121

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           R     +QP +N +I    A+ R   P   FM   TRE DL+LF+ ++    + TD+   
Sbjct: 122 RINTDALQPYLNEEIIAQEALTRAEGPIRDFMLAQTRESDLALFVRLS----KRTDLAGV 177

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           + +   IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA+I+MAMGMMML P  ISLPFK
Sbjct: 178 EDVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASILMAMGMMMLSPLIISLPFK 237

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW+L++  L  SF
Sbjct: 238 IMLFVLVDGWALIMGTLAASF 258


>gi|269103167|ref|ZP_06155864.1| flagellar biosynthesis protein FliP [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163065|gb|EEZ41561.1| flagellar biosynthesis protein FliP [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 272

 Score =  186 bits (471), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 92/214 (42%), Positives = 141/214 (65%), Gaps = 8/214 (3%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D S++  I+    + T L   P ++I++T F R ++V SILR  +G+   P N VII +A
Sbjct: 65  DYSVTLQIL---ALMTALGFLPAIVILMTSFTRIVVVMSILRQALGLQQTPSNQVIIGIA 121

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           LF+TF+VMSP LDR     +QP +N QIT   A+++   P   FM   TR KDL  F+++
Sbjct: 122 LFLTFFVMSPVLDRINAQAVQPYINEQITAPQALEKAKVPMREFMLKQTRVKDLETFVNI 181

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           + +      ++    +   +LIP+F+ SEL+ +F+IGF++ LPFL+ID++VA+++MAMGM
Sbjct: 182 SGA-----KVSDPQQVPMTVLIPAFITSELKTAFQIGFMLFLPFLVIDLVVASVLMAMGM 236

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 237 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 270


>gi|120613021|ref|YP_972699.1| flagellar biosynthesis protein FliP [Acidovorax citrulli AAC00-1]
 gi|120591485|gb|ABM34925.1| flagellar biosynthetic protein FliP [Acidovorax citrulli AAC00-1]
          Length = 262

 Score =  186 bits (471), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 94/207 (45%), Positives = 135/207 (65%), Gaps = 4/207 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++T   FT LS  P +L+M+T F R +IV S++R  +G  S PPN VII L+LF+TF+VM
Sbjct: 59  IQTLLFFTALSFLPAVLLMMTGFTRIVIVLSLIRQAIGTQSAPPNQVIIGLSLFLTFFVM 118

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            PT DR       P  NN IT   A++R   P   FM   TR+ D +LF  +A      T
Sbjct: 119 GPTFDRVYADAYLPYSNNTITFEQAVERAEAPMRSFMLKQTRQSDFALFARLAKLPSGAT 178

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
             T       R+L+P+F+ SEL+ +F+IGF+I +PFL+IDM+V++I+M++GMMML P  +
Sbjct: 179 AETA----PMRVLVPAFVTSELKSAFQIGFMIFIPFLVIDMVVSSILMSLGMMMLSPVLV 234

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +LPFK++ FVL DGW+LL+ +L  SF+
Sbjct: 235 ALPFKLMLFVLADGWNLLLGSLAASFV 261


>gi|54308125|ref|YP_129145.1| flagellar biosynthesis protein FliP [Photobacterium profundum SS9]
 gi|46912551|emb|CAG19343.1| Putative polar flagellar assembly protein, FliP [Photobacterium
           profundum SS9]
          Length = 284

 Score =  186 bits (471), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 94/214 (43%), Positives = 140/214 (65%), Gaps = 8/214 (3%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D S++  I+   G+ T L   P ++I++T F R ++V SILR  MG+   P N VII +A
Sbjct: 77  DYSVTLQIL---GLMTALGFLPAIIILMTSFTRIVVVLSILRQAMGLQQTPSNQVIIGIA 133

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           LF+T +VMSP +D+     +QP +N +IT   A +    P   FM   TR KDL  F++M
Sbjct: 134 LFLTLFVMSPVIDKVNADAVQPYINEEITAAQAFETAQVPLRQFMLKQTRVKDLESFVNM 193

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           + S+      T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM
Sbjct: 194 SGSTA-----TAPEDVPITVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 248

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 249 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 282


>gi|222112240|ref|YP_002554504.1| flagellar biosynthesis protein flip [Acidovorax ebreus TPSY]
 gi|221731684|gb|ACM34504.1| flagellar biosynthetic protein FliP [Acidovorax ebreus TPSY]
          Length = 251

 Score =  186 bits (471), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 95/206 (46%), Positives = 134/206 (65%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++T   FT LS  P +L+M+T F R +IV S+LR  +G  S PPN VII L+LF+T +VM
Sbjct: 48  IQTLLFFTALSFLPAVLLMMTGFTRIVIVLSLLRQAIGTQSAPPNQVIIGLSLFLTLFVM 107

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            PTLD+  +    P   N IT   AIQR   P   FM   TR+ D +LF  +A      T
Sbjct: 108 GPTLDKVYQEAYVPYTTNAITFEQAIQRAEAPMRGFMLKQTRQSDFALFARLAKLDEGVT 167

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
             T       R+L+P+F+ SEL+ +F+IGF+I +PFLIIDM+V++++M++GMMML P  +
Sbjct: 168 AETA----PLRVLVPAFVTSELKSAFQIGFMIFIPFLIIDMVVSSVLMSLGMMMLSPVLV 223

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           +LPFK++ FVL DGW+LL+ +L  SF
Sbjct: 224 ALPFKLMLFVLADGWNLLIGSLAASF 249


>gi|328474450|gb|EGF45255.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus 10329]
          Length = 289

 Score =  186 bits (471), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 94/214 (43%), Positives = 139/214 (64%), Gaps = 8/214 (3%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D S++  I+    + T+L   P ++I++T F R ++V SILR  MG+   P N VII +A
Sbjct: 82  DYSVTLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 138

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           LF+TF+VMSP L+   +  IQP +N Q+T   A      P   FM   TR KDL  F++M
Sbjct: 139 LFLTFFVMSPVLNEINDTAIQPYLNEQVTAREAFDAAQVPMKAFMLKQTRIKDLETFVNM 198

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           +        +T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM
Sbjct: 199 SGE-----QVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 253

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 254 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287


>gi|327481256|gb|AEA84566.1| flagellar biosynthesis protein FliP [Pseudomonas stutzeri DSM 4166]
          Length = 258

 Score =  185 bits (470), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 94/201 (46%), Positives = 131/201 (65%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           I T LS  P  ++++T F R IIVFSILR  +G+   P N ++I L LF+T ++M+P  D
Sbjct: 59  IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILIGLTLFLTLFIMAPVFD 118

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           R  +  +QP ++ QI    AI R   P   FM   TRE DL LF+ ++      TDI   
Sbjct: 119 RINQDALQPYLSEQIPAQEAIARAEVPLKNFMLAQTRESDLELFVRLSQ----RTDIASP 174

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           +     IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA+++MAMGMMML P  ISLPFK
Sbjct: 175 EAAPMTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFK 234

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW L++  L  SF
Sbjct: 235 IMLFVLVDGWGLIIGTLAGSF 255


>gi|156975420|ref|YP_001446327.1| flagellar biosynthesis protein FliP [Vibrio harveyi ATCC BAA-1116]
 gi|156527014|gb|ABU72100.1| hypothetical protein VIBHAR_03151 [Vibrio harveyi ATCC BAA-1116]
          Length = 289

 Score =  185 bits (470), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 94/214 (43%), Positives = 139/214 (64%), Gaps = 8/214 (3%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D S++  I+    + T+L   P ++I++T F R ++V SILR  MG+   P N VII +A
Sbjct: 82  DYSVTLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 138

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           LF+TF+VMSP L+   +  IQP +N Q+T   A      P   FM   TR KDL  F++M
Sbjct: 139 LFLTFFVMSPVLNEINDNAIQPYLNEQVTARQAFDAAQVPMKAFMLKQTRIKDLETFVNM 198

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           +        +T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM
Sbjct: 199 SGE-----QVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 253

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 254 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287


>gi|257484903|ref|ZP_05638944.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|289629020|ref|ZP_06461974.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289651610|ref|ZP_06482953.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298487821|ref|ZP_07005861.1| Flagellar biosynthesis protein fliP [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157546|gb|EFH98626.1| Flagellar biosynthesis protein fliP [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330866458|gb|EGH01167.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330986502|gb|EGH84605.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331011077|gb|EGH91133.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 250

 Score =  185 bits (470), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 104/248 (41%), Positives = 153/248 (61%), Gaps = 23/248 (9%)

Query: 9   LFLVTPELVFAKSSLHDVMNIPA-----------DLSISTWIVRTFGIFTILSIAPILLI 57
           L +VTP ++ A     D ++IPA           + S+S  I+    I T LS  P  ++
Sbjct: 12  LVMVTPAVLAA-----DPLSIPAITLSNGADGQQEYSVSLQILL---IMTALSFIPAFVM 63

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           ++T F R IIVFSILR  +G+   P N ++  +ALF+T ++M+P  DR  +  +QP +  
Sbjct: 64  LMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAE 123

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
           ++T   A+ +   P   FM   TR  DL LFM ++    + TDI   D     IL+P+F+
Sbjct: 124 KLTAQDAVAKAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTPDAAPLTILVPAFV 179

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
           ISEL+ +F+IGF+I +PFLIID++VA+++MAMGMMML P  ISLPFK++ FVL+DGW+L+
Sbjct: 180 ISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALI 239

Query: 238 VENLVKSF 245
           V  L  SF
Sbjct: 240 VGTLAGSF 247


>gi|262276385|ref|ZP_06054194.1| flagellar biosynthesis protein FliP [Grimontia hollisae CIP 101886]
 gi|262220193|gb|EEY71509.1| flagellar biosynthesis protein FliP [Grimontia hollisae CIP 101886]
          Length = 277

 Score =  185 bits (470), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 92/214 (42%), Positives = 140/214 (65%), Gaps = 8/214 (3%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D S++  I     + T L   P ++I++T F R ++V +ILR  MG+   P N VII +A
Sbjct: 71  DYSVTLQI---LALMTALGFLPAIVILMTSFTRIVVVMAILRQAMGLQQTPSNQVIIGIA 127

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           +F+T ++MSP +DR     +QP +N +IT   A  RV  P   FM   TR KDL  F++M
Sbjct: 128 MFLTLFIMSPVIDRMNVAAVQPYLNEEITAREAFDRVQVPLREFMLQQTRVKDLETFVNM 187

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           + +      +T+ + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM
Sbjct: 188 SGA-----QVTEAEQVPMTVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 242

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 243 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 276


>gi|260899945|ref|ZP_05908340.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus
           AQ4037]
 gi|308107285|gb|EFO44825.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus
           AQ4037]
          Length = 289

 Score =  185 bits (470), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 94/214 (43%), Positives = 139/214 (64%), Gaps = 8/214 (3%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D S++  I+    + T+L   P ++I++T F R ++V SILR  MG+   P N VII +A
Sbjct: 82  DYSVTLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 138

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           LF+TF+VMSP L+   +  IQP +N Q+T   A      P   FM   TR KDL  F++M
Sbjct: 139 LFLTFFVMSPVLNEINDTAIQPYLNEQVTAREAFDAAQVPMKAFMLKQTRIKDLETFVNM 198

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           +        +T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM
Sbjct: 199 SGE-----QVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 253

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 254 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287


>gi|153834137|ref|ZP_01986804.1| flagellar biosynthesis protein [Vibrio harveyi HY01]
 gi|148869507|gb|EDL68505.1| flagellar biosynthesis protein [Vibrio harveyi HY01]
          Length = 280

 Score =  185 bits (470), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 94/214 (43%), Positives = 139/214 (64%), Gaps = 8/214 (3%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D S++  I+    + T+L   P ++I++T F R ++V SILR  MG+   P N VII +A
Sbjct: 73  DYSVTLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 129

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           LF+TF+VMSP L+   +  IQP +N Q+T   A      P   FM   TR KDL  F++M
Sbjct: 130 LFLTFFVMSPVLNEINDNAIQPYLNEQVTARQAFDAAQVPMKAFMLKQTRIKDLETFVNM 189

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           +        +T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM
Sbjct: 190 SGE-----QVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 244

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 245 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 278


>gi|153953789|ref|YP_001394554.1| flagellar biosynthesis protein FliP [Clostridium kluyveri DSM 555]
 gi|219854405|ref|YP_002471527.1| hypothetical protein CKR_1062 [Clostridium kluyveri NBRC 12016]
 gi|146346670|gb|EDK33206.1| FliP [Clostridium kluyveri DSM 555]
 gi|219568129|dbj|BAH06113.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 258

 Score =  185 bits (470), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 90/193 (46%), Positives = 136/193 (70%), Gaps = 4/193 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +++M+T F R ++VF  LRT MG    PPN V++ LALF+T ++M P   +     IQ
Sbjct: 69  PSIIMMMTSFVRIVVVFGFLRTAMGTQQSPPNQVLVGLALFLTVFIMLPVYGKINSEAIQ 128

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P + N IT+  A++R A+P   FM   TR+KDL LF+D A     N ++TK++   Y ++
Sbjct: 129 PYLQNGITQEQAVERGAKPLREFMLKQTRQKDLKLFVDEAK---LNYEVTKDNAPLY-VV 184

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           IP+++ISEL+ +F+IGFL+ +PF+IID++V +++M+MGM MLPP  ISLPFK++ FV+ D
Sbjct: 185 IPAYIISELKTAFQIGFLLYIPFMIIDLVVGSVLMSMGMFMLPPVMISLPFKLLLFVMTD 244

Query: 233 GWSLLVENLVKSF 245
           GW LLV++L+ SF
Sbjct: 245 GWYLLVKSLIISF 257


>gi|4322007|gb|AAD15910.1| polar flagellar assembly protein FliP [Vibrio parahaemolyticus]
          Length = 289

 Score =  185 bits (470), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 94/214 (43%), Positives = 139/214 (64%), Gaps = 8/214 (3%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D S++  I+    + T+L   P ++I++T F R ++V SILR  MG+   P N VII +A
Sbjct: 82  DYSVTLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 138

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           LF+TF+VMSP L+   +  IQP +N Q+T   A      P   FM   TR KDL  F++M
Sbjct: 139 LFLTFFVMSPVLNEINDTAIQPYLNEQVTAREAFDAAQVPMKAFMLKQTRIKDLETFVNM 198

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           +        +T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM
Sbjct: 199 SGE-----QVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 253

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 254 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287


>gi|218778860|ref|YP_002430178.1| flagellar biosynthetic protein FliP [Desulfatibacillum alkenivorans
           AK-01]
 gi|218760244|gb|ACL02710.1| Flagellar biosynthetic protein FliP [Desulfatibacillum alkenivorans
           AK-01]
          Length = 256

 Score =  185 bits (470), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 94/216 (43%), Positives = 146/216 (67%), Gaps = 7/216 (3%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P  +S+   +++   + T+L++AP +L+++T F R  +VFS LR  +G   +PPN V++ 
Sbjct: 45  PEQVSV---LLQIVALLTVLTLAPAILMLMTSFTRLAVVFSFLRHALGTQQMPPNQVMVG 101

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           LALF+T ++M P         +QP +N +I +  AI++   P   FM  +TREKDL+LF+
Sbjct: 102 LALFLTVFIMMPVWKDINTNALQPYLNEEIGDQEAIEKAVTPLREFMFRHTREKDLALFV 161

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
            ++  +  N+       +    LIP+F+ISEL  +F IGF+I +PFLIIDM+VA+++++M
Sbjct: 162 KISGEAKPNSP----KDVTIWTLIPAFVISELTTAFMIGFIIYVPFLIIDMVVASVLLSM 217

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMMLPP  ISLPFK++ FVL+DGWSL+V +LV+SF
Sbjct: 218 GMMMLPPVMISLPFKLMLFVLVDGWSLIVGSLVQSF 253


>gi|289829471|ref|ZP_06547083.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 186

 Score =  185 bits (470), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 87/188 (46%), Positives = 131/188 (69%), Gaps = 4/188 (2%)

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           M+T F R IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    
Sbjct: 1   MMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQ 60

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
           +I+   A+ + A+P   FM   TRE DL+LF  +A+S      +   + +  RIL+P+++
Sbjct: 61  KISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGP----LQGPEAVPMRILLPAYV 116

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
            SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LL
Sbjct: 117 TSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLL 176

Query: 238 VENLVKSF 245
           V +L +SF
Sbjct: 177 VGSLAQSF 184


>gi|169831899|ref|YP_001717881.1| flagellar biosynthetic protein FliP [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638743|gb|ACA60249.1| flagellar biosynthetic protein FliP [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 260

 Score =  185 bits (470), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 93/206 (45%), Positives = 138/206 (66%), Gaps = 5/206 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           VR     T++S+ P  L+MVT F R ++V + LR G+G+   PP  V+I LALF+T ++M
Sbjct: 59  VRLLLFLTVISLLPAFLVMVTSFTRIVVVLAFLRAGLGIYQAPPGSVLIGLALFLTVFIM 118

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +P   +  E  I+P +  +I +  A +R A P   FM  +TREKDL LF+ MA   +   
Sbjct: 119 APVYAQVNEQAIEPFLRGEIDQVEAQERAAGPLREFMLRHTREKDLDLFVRMAEIEN--- 175

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                + +   ++IP+F+ISEL+ +F +GF++ LPFLIIDM+VA+I+++MGM MLPP  I
Sbjct: 176 --PVPNELPLTVVIPAFIISELKTAFTMGFMLYLPFLIIDMVVASILLSMGMFMLPPVMI 233

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW L+V +LV+SF
Sbjct: 234 SLPFKLLLFVLVDGWYLVVRSLVESF 259


>gi|254478865|ref|ZP_05092229.1| flagellar biosynthetic protein FliP [Carboxydibrachium pacificum
           DSM 12653]
 gi|214035178|gb|EEB75888.1| flagellar biosynthetic protein FliP [Carboxydibrachium pacificum
           DSM 12653]
          Length = 221

 Score =  185 bits (470), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 102/228 (44%), Positives = 153/228 (67%), Gaps = 14/228 (6%)

Query: 21  SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
           S+L   +  P++LS S  IV      T+L++AP +LIM+T F R +IV + LR  +G+  
Sbjct: 4   SNLVSSVTSPSNLSTSLQIVLLL---TVLTLAPSILIMMTSFTRIVIVLAFLRNALGLQQ 60

Query: 81  VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
           +PPN V+I LALF+TFY+M+P         I+P +  QI +  A +R  +P   FM   T
Sbjct: 61  MPPNQVLIGLALFLTFYIMAPVGYDINNNAIKPYVEGQINQYEAYERAIKPLKSFMLRQT 120

Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIE---YRILIPSFMISELRRSFEIGFLIILPFLI 197
           R+ DL+LF+++A          K D +E    R++IP+F+ISEL+ +FEIGF+I +PFL+
Sbjct: 121 RQNDLALFVNLAK--------IKADKVEDLPMRVVIPAFIISELKTAFEIGFIIYIPFLV 172

Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ID+IVA+++M+MGM MLPP  ISLPFKV+ F+L+DGW+L+V++L+  F
Sbjct: 173 IDIIVASVLMSMGMFMLPPVLISLPFKVLLFILVDGWNLVVKSLILGF 220


>gi|161484783|ref|NP_669792.2| flagellar biosynthesis protein FliP [Yersinia pestis KIM 10]
 gi|161511402|ref|NP_992929.2| flagellar biosynthesis protein FliP [Yersinia pestis biovar
           Microtus str. 91001]
 gi|161760581|ref|YP_070220.2| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis IP
           32953]
 gi|162100177|ref|YP_651108.2| flagellar biosynthesis protein FliP [Yersinia pestis Antiqua]
 gi|162139435|ref|YP_648231.2| flagellar biosynthesis protein FliP [Yersinia pestis Nepal516]
 gi|167401077|ref|ZP_02306580.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|115347552|emb|CAL20461.1| flagellar biosynthetic protein FliP [Yersinia pestis CO92]
 gi|167049466|gb|EDR60874.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua
           str. UG05-0454]
          Length = 246

 Score =  185 bits (470), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 94/227 (41%), Positives = 146/227 (64%), Gaps = 6/227 (2%)

Query: 21  SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           + L  +++ P      +W   V+T    T LS  P  L+M+T F R IIV  +LR  MG 
Sbjct: 22  AQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLLRNAMGT 81

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
            S PPN V++ LALF+TF++MSP  D+  +    P   ++I+   A+ + ++P   FM  
Sbjct: 82  PSAPPNQVMLGLALFLTFFIMSPVFDKVYQEAYLPFSQDKISMDVALDKGSQPLREFMLR 141

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
            TRE DL+L+  +A+       +   + +  RIL+P+++ SEL+ +F+IGF + +PFLII
Sbjct: 142 QTRESDLALYARLANLP----PLEGPEMVPMRILLPAYVTSELKTAFQIGFTVFIPFLII 197

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           D++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 198 DLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 244


>gi|74055044|gb|AAZ95849.1| FliP [Aeromonas hydrophila]
          Length = 259

 Score =  185 bits (470), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 92/206 (44%), Positives = 137/206 (66%), Gaps = 5/206 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   + T LS  P ++IM+T F R IIV  ILR  +G+   P N V+I +ALFM+F++M
Sbjct: 53  LQVLALMTALSFLPAMVIMMTSFTRIIIVLGILRQAIGLQQSPSNQVLIGIALFMSFFIM 112

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP LDR     +QP +   I    A+++   P   FM   TR KDL+ FM++A     N 
Sbjct: 113 SPVLDRINNEALQPYLAETIQAKEALEKAELPIHQFMLAQTRIKDLNTFMEIA-----NV 167

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            + K   +  R+LIP+F+ SEL+ +F+IGF++ LPFL+ID++VA+I+MAMGMMML P  +
Sbjct: 168 QVDKPAEVPLRVLIPAFVTSELKTAFQIGFMLFLPFLVIDLVVASILMAMGMMMLSPMLV 227

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FV++DGW+L++ +L  SF
Sbjct: 228 SLPFKLMLFVMVDGWNLILGSLANSF 253


>gi|27365290|ref|NP_760818.1| flagellar biosynthesis protein FliP [Vibrio vulnificus CMCP6]
 gi|37680655|ref|NP_935264.1| flagellar biosynthesis protein FliP [Vibrio vulnificus YJ016]
 gi|320155674|ref|YP_004188053.1| flagellar biosynthesis protein FliP [Vibrio vulnificus MO6-24/O]
 gi|27361437|gb|AAO10345.1| flagellar biosynthetic protein FliP [Vibrio vulnificus CMCP6]
 gi|37199404|dbj|BAC95235.1| flagellar biosynthesis pathway, component FliP [Vibrio vulnificus
           YJ016]
 gi|319930986|gb|ADV85850.1| flagellar biosynthesis protein FliP [Vibrio vulnificus MO6-24/O]
          Length = 289

 Score =  185 bits (469), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 89/206 (43%), Positives = 134/206 (65%), Gaps = 5/206 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   + T+L   P ++I++T F R ++V SILR  MG+   P N VII +ALF+TF++M
Sbjct: 87  LQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFIM 146

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP ++   E  +QP +N Q+T   A      P   FM   TR KDL  F++M+     N 
Sbjct: 147 SPVINEVNEQAVQPYLNEQLTAREAFDAAQGPMKAFMLKQTRVKDLETFVNMSGEQATNP 206

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           +      +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGMMML P  +
Sbjct: 207 E-----DVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGMMMLSPMIV 261

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 262 SLPFKLMLFVLVDGWNLILSTLAGSF 287


>gi|258511388|ref|YP_003184822.1| flagellar biosynthetic protein FliP [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478114|gb|ACV58433.1| flagellar biosynthetic protein FliP [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 272

 Score =  185 bits (469), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 85/188 (45%), Positives = 129/188 (68%)

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           ++TCF R I+V S +R  + + + PPN V++ LALF+T +VM PTL ++    +QP +  
Sbjct: 83  LMTCFTRVIVVLSFVRNALSLQTSPPNQVLVGLALFITLFVMQPTLQQANTQALQPYLRG 142

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
           QI++T AI+R   PF VFM   TR +DL LF+   H +         + I    L+P+F 
Sbjct: 143 QISQTAAIERAEAPFKVFMAKQTRAQDLELFLAYRHETLTAEMERHPEAIAMSALVPAFT 202

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
           +SEL+ +F+IGF+I LPFL+ID++V+T +M+MGMMMLPP  ISLPFKV+ FV+++GW L+
Sbjct: 203 LSELQTAFQIGFMIYLPFLVIDLVVSTTLMSMGMMMLPPVMISLPFKVLLFVMVNGWYLV 262

Query: 238 VENLVKSF 245
           V++L+  +
Sbjct: 263 VKSLLVGY 270


>gi|150390469|ref|YP_001320518.1| flagellar biosynthetic protein FliP [Alkaliphilus metalliredigens
           QYMF]
 gi|149950331|gb|ABR48859.1| flagellar biosynthetic protein FliP [Alkaliphilus metalliredigens
           QYMF]
          Length = 267

 Score =  185 bits (469), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 92/201 (45%), Positives = 137/201 (68%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + TILSIAP +LIM+T F R +IV S LR  +     PP  +II LALF+TF+ M+P   
Sbjct: 70  LLTILSIAPAILIMMTSFTRIVIVLSFLRNAIATQQTPPTQIIIGLALFLTFFTMAPIAT 129

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
                 +QP +  ++ +  A++R  EP   FM   TREKDL+LF+++++S       T+ 
Sbjct: 130 DINTNALQPYLAEELGQEEALERAMEPIREFMFRQTREKDLALFIEVSNSEMP----TEV 185

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
             I    LIP+F+ISEL+ +F++GF++ +PF++IDM+VA+ +MAMGMMMLPP  ISLPFK
Sbjct: 186 ADIATSTLIPAFIISELKTAFQMGFILFIPFIVIDMVVASTLMAMGMMMLPPAMISLPFK 245

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ F+++DGW++LV  L+ SF
Sbjct: 246 LLLFIMVDGWNILVRALIMSF 266


>gi|311992339|gb|ADQ26743.1| flagellar export component [Aeromonas hydrophila]
          Length = 258

 Score =  185 bits (469), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 92/206 (44%), Positives = 137/206 (66%), Gaps = 5/206 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   + T LS  P ++IM+T F R IIV  ILR  +G+   P N V+I +ALFM+F++M
Sbjct: 52  LQVLALMTALSFLPAMVIMMTSFTRIIIVLGILRQAIGLQQSPSNQVLIGIALFMSFFIM 111

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP LDR     +QP +   I    A+++   P   FM   TR KDL+ FM++A     N 
Sbjct: 112 SPVLDRINNEALQPYLAETIQAKEALEKAELPIHQFMLAQTRIKDLNTFMEIA-----NV 166

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            + K   +  R+LIP+F+ SEL+ +F+IGF++ LPFL+ID++VA+I+MAMGMMML P  +
Sbjct: 167 QVDKPADVPLRVLIPAFVTSELKTAFQIGFMLFLPFLVIDLVVASILMAMGMMMLSPMLV 226

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FV++DGW+L++ +L  SF
Sbjct: 227 SLPFKLMLFVMVDGWNLILGSLANSF 252


>gi|291558213|emb|CBL35330.1| flagellar biosynthetic protein FliP [Eubacterium siraeum V10Sc8a]
          Length = 296

 Score =  185 bits (469), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 91/208 (43%), Positives = 130/208 (62%), Gaps = 9/208 (4%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T+LS+AP LL+M+T F R II FS LRT M   S PPN+V+  L+LF+T ++M P     
Sbjct: 87  TVLSLAPSLLVMMTSFARIIICFSFLRTAMQTQSTPPNMVLTGLSLFLTIFIMWPVFSEI 146

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
            E   QP    ++T   AI    +P   FM   T   D+  F+D+   S  +      D+
Sbjct: 147 NETAYQPYAAGEMTMEQAIDAAGKPLKTFMLKQTTNDDMKFFLDLKGQSMSDVTGGATDN 206

Query: 167 IE---------YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
           I          +  +IP+F++SEL+R+F++GFLI +PFL+ID++V++ +MAMGMMMLPP 
Sbjct: 207 ITLENYSEKLGFETVIPAFIVSELKRAFQMGFLIFIPFLVIDLVVSSTLMAMGMMMLPPA 266

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
            ISLPFK+I FVL+DGW L+V  +V S+
Sbjct: 267 MISLPFKIILFVLVDGWQLMVGTIVNSY 294


>gi|167750712|ref|ZP_02422839.1| hypothetical protein EUBSIR_01690 [Eubacterium siraeum DSM 15702]
 gi|167656391|gb|EDS00521.1| hypothetical protein EUBSIR_01690 [Eubacterium siraeum DSM 15702]
          Length = 307

 Score =  185 bits (469), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 91/208 (43%), Positives = 130/208 (62%), Gaps = 9/208 (4%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T+LS+AP LL+M+T F R II FS LRT M   S PPN+V+  L+LF+T ++M P     
Sbjct: 98  TVLSLAPSLLVMMTSFARIIICFSFLRTAMQTQSTPPNMVLTGLSLFLTIFIMWPVFSEI 157

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
            E   QP    ++T   AI    +P   FM   T   D+  F+D+   S  +      D+
Sbjct: 158 NETAYQPYAAGEMTMEQAIDAAGKPLKTFMLKQTTNDDMKFFLDLKGQSMSDVTGGATDN 217

Query: 167 IE---------YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
           I          +  +IP+F++SEL+R+F++GFLI +PFL+ID++V++ +MAMGMMMLPP 
Sbjct: 218 ITLENYSEKLGFETVIPAFIVSELKRAFQMGFLIFIPFLVIDLVVSSTLMAMGMMMLPPA 277

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
            ISLPFK+I FVL+DGW L+V  +V S+
Sbjct: 278 MISLPFKIILFVLVDGWQLMVGTIVNSY 305


>gi|153836933|ref|ZP_01989600.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus
           AQ3810]
 gi|149749706|gb|EDM60451.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus
           AQ3810]
          Length = 276

 Score =  185 bits (469), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 94/214 (43%), Positives = 139/214 (64%), Gaps = 8/214 (3%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D S++  I+    + T+L   P ++I++T F R ++V SILR  MG+   P N VII +A
Sbjct: 69  DYSVTLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 125

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           LF+TF+VMSP L+   +  IQP +N Q+T   A      P   FM   TR KDL  F++M
Sbjct: 126 LFLTFFVMSPVLNEINDTAIQPYLNEQVTAREAFDVAQVPMKAFMLKQTRIKDLETFVNM 185

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           +        +T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM
Sbjct: 186 SGE-----QVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 240

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 241 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 274


>gi|117618724|ref|YP_855914.1| flagellar biosynthesis protein FliP [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560131|gb|ABK37079.1| flagellar biosynthetic protein FliP [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 259

 Score =  185 bits (469), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 92/206 (44%), Positives = 137/206 (66%), Gaps = 5/206 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   + T LS  P ++IM+T F R IIV  ILR  +G+   P N V+I +ALFM+F++M
Sbjct: 53  LQVLALMTALSFLPAIVIMMTSFTRIIIVLGILRQAIGLQQSPSNQVLIGIALFMSFFIM 112

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP LDR     +QP +   I    A+++   P   FM   TR KDL+ FM++A     N 
Sbjct: 113 SPVLDRINNEALQPYLAETIQAKEALEKAELPIHQFMLAQTRIKDLNTFMEIA-----NV 167

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            + K   +  R+LIP+F+ SEL+ +F+IGF++ LPFL+ID++VA+I+MAMGMMML P  +
Sbjct: 168 QVDKPADVPLRVLIPAFVTSELKTAFQIGFMLFLPFLVIDLVVASILMAMGMMMLSPMLV 227

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FV++DGW+L++ +L  SF
Sbjct: 228 SLPFKLMLFVMVDGWNLILGSLANSF 253


>gi|269836609|ref|YP_003318837.1| flagellar biosynthetic protein FliP [Sphaerobacter thermophilus DSM
           20745]
 gi|269785872|gb|ACZ38015.1| flagellar biosynthetic protein FliP [Sphaerobacter thermophilus DSM
           20745]
          Length = 274

 Score =  185 bits (469), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 91/203 (44%), Positives = 134/203 (66%), Gaps = 4/203 (1%)

Query: 43  FGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT 102
           F + T L++ P LL+MVT F R IIV S  R  +G+  +PPN V++ LALF+T ++M+P 
Sbjct: 75  FVLLTFLALLPTLLMMVTSFTRVIIVLSFARNAIGVPQLPPNQVLLGLALFLTIFIMAPV 134

Query: 103 LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT 162
                   +QP +  +I +  A+ R   P   FM   TRE+DL+LFM +       T   
Sbjct: 135 WQEVNRTALQPYLAGEIAQAEAMDRAVRPLREFMLRQTRERDLALFMQLGQQPRPRTP-- 192

Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
             D +   +L+PSF++SEL+ +F++GF+I +PFLIIDMIV++ +M+MGM+MLPP  +SLP
Sbjct: 193 --DDVPTWVLVPSFIVSELKTAFQMGFVIFIPFLIIDMIVSSALMSMGMIMLPPVIVSLP 250

Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245
           FKV+ FV++DGW L+V +LV SF
Sbjct: 251 FKVLLFVMVDGWDLIVRSLVMSF 273


>gi|84388121|ref|ZP_00991017.1| flagellar biosynthesis protein [Vibrio splendidus 12B01]
 gi|84377188|gb|EAP94058.1| flagellar biosynthesis protein [Vibrio splendidus 12B01]
          Length = 309

 Score =  185 bits (469), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 92/218 (42%), Positives = 143/218 (65%), Gaps = 8/218 (3%)

Query: 28  NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87
           N   D SI+  I+    + T+L   P ++I++T F R ++V SILR  MG+   P N VI
Sbjct: 98  NGGEDYSINLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVI 154

Query: 88  ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147
           I +A+F+TF++MSP +++  E  +QP +N QI+   A      P   FM   TR KDL  
Sbjct: 155 IGIAIFLTFFIMSPVINQVNEQAVQPYLNEQISARQAFDVAQGPIKSFMLKQTRIKDLET 214

Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
           F++++ +     ++T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++M
Sbjct: 215 FVEISGA-----EVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLM 269

Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           AMGMMML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 270 AMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 307


>gi|332559786|ref|ZP_08414108.1| FliP2 [Rhodobacter sphaeroides WS8N]
 gi|332277498|gb|EGJ22813.1| FliP2 [Rhodobacter sphaeroides WS8N]
          Length = 238

 Score =  185 bits (469), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 91/212 (42%), Positives = 136/212 (64%), Gaps = 5/212 (2%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           S++   V+   + T+LS+ P L +M+TCFP  + V SILR  +G+   PPN++I+SLALF
Sbjct: 31  SLTARSVQLIAVITLLSLVPALAMMITCFPFIVTVLSILRQAIGLQQAPPNMLIVSLALF 90

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           +T+YVM P    +   GI PL  N++    A+   A PF  FM        L+     A 
Sbjct: 91  LTWYVMDPVFTEAWTRGIGPLTRNELDLPQALAAAAVPFRGFMTGRIDPDTLA-----AL 145

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
            + R         + + +L+PSF++SE++R+FEIGFLI LPFLIID++V+ ++M+MGMMM
Sbjct: 146 QALRPGPAAPPSEVSFSVLVPSFLLSEIQRAFEIGFLIYLPFLIIDLVVSAVLMSMGMMM 205

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +PP  +S+PFK+ FFV+ DGWSL+   LV+S+
Sbjct: 206 VPPAVVSMPFKLAFFVVADGWSLISGALVRSY 237


>gi|77464887|ref|YP_354391.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides 2.4.1]
 gi|77389305|gb|ABA80490.1| Type III secretion system inner membrane P protein [Rhodobacter
           sphaeroides 2.4.1]
          Length = 239

 Score =  185 bits (469), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 91/212 (42%), Positives = 136/212 (64%), Gaps = 5/212 (2%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           S++   V+   + T+LS+ P L +M+TCFP  + V SILR  +G+   PPN++I+SLALF
Sbjct: 32  SLTARSVQLIAVITLLSLVPALAMMITCFPFIVTVLSILRQAIGLQQAPPNMLIVSLALF 91

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           +T+YVM P    +   GI PL  N++    A+   A PF  FM        L+     A 
Sbjct: 92  LTWYVMDPVFTEAWTRGIGPLTRNELDLPQALAAAAVPFRGFMTGRIDPDTLA-----AL 146

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
            + R         + + +L+PSF++SE++R+FEIGFLI LPFLIID++V+ ++M+MGMMM
Sbjct: 147 QALRPGPAAPPSEVSFSVLVPSFLLSEIQRAFEIGFLIYLPFLIIDLVVSAVLMSMGMMM 206

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +PP  +S+PFK+ FFV+ DGWSL+   LV+S+
Sbjct: 207 VPPAVVSMPFKLAFFVVADGWSLISGALVRSY 238


>gi|330808228|ref|YP_004352690.1| flagellar biosynthetic protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376336|gb|AEA67686.1| Flagellar biosynthetic protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 249

 Score =  185 bits (469), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 92/201 (45%), Positives = 132/201 (65%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           I T LS  P  ++++T F R IIVFSILR  +G+   P N ++  +ALF+T ++M+P  D
Sbjct: 50  IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFD 109

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           R  +  +QP +  +IT   A+ +   P   FM   TR  DL LFM ++    + TDI   
Sbjct: 110 RVNQDALQPYLAEKITAQDAVAKAEVPIKDFMLAQTRSSDLELFMRLS----KRTDIPSA 165

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D     IL+P+F+ SEL+ +F+IGF+I +PFLIID++VA+I+MAMGMMML P  ISLPFK
Sbjct: 166 DQAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASILMAMGMMMLSPLIISLPFK 225

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW+L++  L  SF
Sbjct: 226 IMLFVLVDGWALIIGTLAGSF 246


>gi|145298356|ref|YP_001141197.1| flagellar biosynthesis protein FliP [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851128|gb|ABO89449.1| Flagellar biosynthesis protein FliP [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 249

 Score =  185 bits (469), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 91/206 (44%), Positives = 139/206 (67%), Gaps = 5/206 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   + T LS  P ++IM+T F R IIV  ILR  +G+   P N V+I +ALFM+F++M
Sbjct: 43  LQVLALMTALSFLPAVVIMMTSFTRIIIVLGILRQAIGLQQSPSNQVLIGIALFMSFFIM 102

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP LDR  +  +QP +   I    A+++   P   FM + TR KDL+ FM++A     + 
Sbjct: 103 SPVLDRINDEALQPYLAETIQAREALEKAELPIHQFMLSQTRIKDLNTFMEIA-----DV 157

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            + K   +  R+LIP+F+ SEL+ +F+IGF++ LPFL+ID++VA+I+MAMGMMML P  +
Sbjct: 158 QVDKPAEVPLRVLIPAFVTSELKTAFQIGFMLFLPFLVIDLVVASILMAMGMMMLSPMLV 217

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FV++DGW+L++ +L  SF
Sbjct: 218 SLPFKLMLFVMVDGWNLILGSLANSF 243


>gi|330940696|gb|EGH43707.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 250

 Score =  184 bits (468), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 92/201 (45%), Positives = 133/201 (66%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           I T LS  P  ++++T F R IIVFSILR  +G+   P N ++  +ALF+T ++M+P  D
Sbjct: 51  IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQAPSNQILTGMALFLTMFIMAPVFD 110

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           R  +  +QP +  +++   A+ +   P   FM   TR  DL LFM ++    + TDI   
Sbjct: 111 RVNQDALQPYLAEKLSAQDAVAKAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTP 166

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D     IL+P+F+ISEL+ +F+IGF+I +PFLIIDM+VA+++MAMGMMML P  ISLPFK
Sbjct: 167 DAAPLTILVPAFVISELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFK 226

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW+L+V  L  SF
Sbjct: 227 IMLFVLVDGWALIVGTLAGSF 247


>gi|284007164|emb|CBA72448.1| flagellar biosynthesis protein FliP [Arsenophonus nasoniae]
          Length = 245

 Score =  184 bits (468), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 96/231 (41%), Positives = 143/231 (61%), Gaps = 12/231 (5%)

Query: 23  LHDVMNIPADLSI------STWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74
           LH    IPA  S        +W   V+T    T L   P LL+M T F R IIV  +LR 
Sbjct: 17  LHAYAAIPAITSQPLANGGQSWSLPVQTLIFITALGFIPALLLMTTSFTRIIIVLGLLRN 76

Query: 75  GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134
            +G  + PPN +++ LALFMTF+VMSP  D+  +    P    +IT    +   A+P   
Sbjct: 77  ALGTPTAPPNQILLGLALFMTFFVMSPVFDKIYQNAYLPFSEEKITIEVDLSEGAKPLRQ 136

Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
           FM   TR+ DL+LF  +A+ S   T       +  RIL+P+F+ SEL+ +F+IGF++ +P
Sbjct: 137 FMLQQTRQPDLALFARLANDSEYQT----QADVPMRILVPAFITSELKTAFQIGFMLFIP 192

Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           FLIID++VA+++MA+GMMM+PP ++++PFK++ FVL+DGW L++ +L +SF
Sbjct: 193 FLIIDLVVASVLMALGMMMVPPATVAMPFKLMLFVLVDGWQLILGSLAQSF 243


>gi|160880831|ref|YP_001559799.1| flagellar biosynthetic protein FliP [Clostridium phytofermentans
           ISDg]
 gi|160429497|gb|ABX43060.1| flagellar biosynthetic protein FliP [Clostridium phytofermentans
           ISDg]
          Length = 281

 Score =  184 bits (468), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 91/194 (46%), Positives = 134/194 (69%), Gaps = 4/194 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +LIM+T F R I+V   +R+ +G  + PPN V+I LALF+T ++MSP +       +
Sbjct: 91  APSILIMLTSFIRIIVVLHFVRSALGTQTTPPNQVLIGLALFLTLFIMSPIITNINTNAV 150

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           QPL   +IT+  A  +  EP   FM + T EKD+ LF+D+A      T++     +    
Sbjct: 151 QPLSKGEITQEQAFTQGMEPLRDFMFDQTNEKDMQLFLDIAGV----TEVNDRADVPSTA 206

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           LIP+F+ISELR +F IGFLI +PFLIIDM+VA+ +M+MGMMMLPPT+IS+PFK++ F++ 
Sbjct: 207 LIPAFIISELRAAFIIGFLIYIPFLIIDMVVASTLMSMGMMMLPPTTISMPFKILLFIMA 266

Query: 232 DGWSLLVENLVKSF 245
           DGW+L++ +++KSF
Sbjct: 267 DGWNLIIGSVIKSF 280


>gi|254474923|ref|ZP_05088309.1| flagellar biosynthetic protein FliP [Ruegeria sp. R11]
 gi|214029166|gb|EEB70001.1| flagellar biosynthetic protein FliP [Ruegeria sp. R11]
          Length = 247

 Score =  184 bits (468), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 93/212 (43%), Positives = 136/212 (64%), Gaps = 3/212 (1%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           S+S   ++   + T+LS+AP LLIMVTCFP  + V SILR  +G+   PPN+++ISLALF
Sbjct: 37  SLSARSIQLILLITVLSLAPGLLIMVTCFPFLVTVLSILRQAIGLQQAPPNMMMISLALF 96

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           +T++VM P  + + + GI PL+  QI   T ++R   PF  FM       D   F  +A 
Sbjct: 97  LTYFVMEPVFNEAWQTGINPLIEEQIDVETGMERALVPFREFM---AARLDPDTFYAIAD 153

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
                  I          L+ SF++SE+ R+F++GFL+ LPFL+ID++VA ++M+MGMMM
Sbjct: 154 LRPGTAGIDPTPDAPLSTLVSSFLLSEIARAFQVGFLVFLPFLVIDLVVAAVLMSMGMMM 213

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +PP  +SLPFK+ FFV+ DGWSL+   LV+S+
Sbjct: 214 VPPAVVSLPFKLAFFVVADGWSLIASALVRSY 245


>gi|121596084|ref|YP_987980.1| flagellar biosynthesis protein FliP [Acidovorax sp. JS42]
 gi|120608164|gb|ABM43904.1| flagellar biosynthetic protein FliP [Acidovorax sp. JS42]
          Length = 251

 Score =  184 bits (468), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 94/206 (45%), Positives = 134/206 (65%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++T   FT LS  P +L+M+T F R +IV S+LR  +G  S PPN VII L+LF+T +VM
Sbjct: 48  IQTLLFFTALSFLPAVLLMMTGFTRIVIVLSLLRQAIGTQSAPPNQVIIGLSLFLTLFVM 107

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            PTLD+  +    P   N IT   AIQ+   P   FM   TR+ D +LF  +A      T
Sbjct: 108 GPTLDKVYQEAYVPYTTNAITFEQAIQKAEAPMRGFMLKQTRQSDFALFARLAKLDEGVT 167

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
             T       R+L+P+F+ SEL+ +F+IGF+I +PFLIIDM+V++++M++GMMML P  +
Sbjct: 168 AETA----PLRVLVPAFVTSELKSAFQIGFMIFIPFLIIDMVVSSVLMSLGMMMLSPVLV 223

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           +LPFK++ FVL DGW+LL+ +L  SF
Sbjct: 224 ALPFKLMLFVLADGWNLLIGSLAASF 249


>gi|323705431|ref|ZP_08117006.1| flagellar biosynthetic protein FliP [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535333|gb|EGB25109.1| flagellar biosynthetic protein FliP [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 249

 Score =  184 bits (468), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 90/194 (46%), Positives = 136/194 (70%), Gaps = 5/194 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +LIM+T F R I+V S LR  +G+  +PPN V+I LALF+TF++M+P   +  +  I
Sbjct: 60  APSILIMMTSFTRIIVVLSFLRNALGLQQMPPNQVLIGLALFLTFFIMAPVGSQINKDSI 119

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           QP M  +IT   A  +  +P   FM   TR+ DL+LF++++    ++ +      +  R+
Sbjct: 120 QPYMQGKITPQEAYVKARDPLKNFMLKQTRKNDLNLFINLSKLKVKSVN-----DVPLRV 174

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           +IPSF+ISEL+ +FEIGF+I +PFLIIDM+VA+++M+MGM MLPP  ISLPFK++ F+L+
Sbjct: 175 VIPSFIISELKTAFEIGFIIYIPFLIIDMVVASVLMSMGMFMLPPVLISLPFKLLLFILV 234

Query: 232 DGWSLLVENLVKSF 245
           DGW++L ++LV  F
Sbjct: 235 DGWNILAKSLVIGF 248


>gi|157371197|ref|YP_001479186.1| flagellar biosynthesis protein FliP [Serratia proteamaculans 568]
 gi|157322961|gb|ABV42058.1| flagellar biosynthetic protein FliP [Serratia proteamaculans 568]
          Length = 274

 Score =  184 bits (468), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 89/206 (43%), Positives = 140/206 (67%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T  + T LS  P +L+M+T F R IIV  +LR  +G  S PPN V++ LALF+TF++M
Sbjct: 71  VQTLVLLTSLSFLPAMLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFIM 130

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP  D+  +    P   ++I+   A+ + ++P   FM   TRE DL+L+  +A+      
Sbjct: 131 SPVFDKVYQDAYLPFSQDKISLDVAMDKGSQPLREFMLRQTRETDLALYAKLANLP---- 186

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +   + +  RIL+P+++ SEL+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP +I
Sbjct: 187 PLAGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATI 246

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 247 SLPFKLMLFVLVDGWQLLLGSLAQSF 272


>gi|145598592|ref|YP_001162668.1| flagellar biosynthesis protein FliP [Yersinia pestis Pestoides F]
 gi|149366232|ref|ZP_01888267.1| flagellar biosynthetic protein FliP [Yersinia pestis CA88-4125]
 gi|153950312|ref|YP_001401271.1| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis IP
           31758]
 gi|165925983|ref|ZP_02221815.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938702|ref|ZP_02227257.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010952|ref|ZP_02231850.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166210900|ref|ZP_02236935.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167420038|ref|ZP_02311791.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425832|ref|ZP_02317585.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170024627|ref|YP_001721132.1| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis
           YPIII]
 gi|186895134|ref|YP_001872246.1| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis
           PB1/+]
 gi|218928941|ref|YP_002346816.1| flagellar biosynthesis protein FliP [Yersinia pestis CO92]
 gi|229896265|ref|ZP_04511435.1| flagellar biosynthetic protein FliP [Yersinia pestis Pestoides A]
 gi|229897202|ref|ZP_04512358.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229897929|ref|ZP_04513080.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229902840|ref|ZP_04517957.1| flagellar biosynthetic protein FliP [Yersinia pestis Nepal516]
 gi|270486627|ref|ZP_06203701.1| flagellar biosynthetic protein FliP [Yersinia pestis KIM D27]
 gi|294504013|ref|YP_003568075.1| flagellar biosynthesis protein [Yersinia pestis Z176003]
 gi|21959354|gb|AAM86043.1|AE013852_5 flagellar biosynthesis protein [Yersinia pestis KIM 10]
 gi|45436250|gb|AAS61806.1| flagellar biosynthesis protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51589311|emb|CAH20932.1| flagellar biosynthetic protein FliP [Yersinia pseudotuberculosis IP
           32953]
 gi|108776112|gb|ABG18631.1| flagellar biosynthetic protein FliP [Yersinia pestis Nepal516]
 gi|108779105|gb|ABG13163.1| flagellar biosynthetic protein FliP [Yersinia pestis Antiqua]
 gi|145210288|gb|ABP39695.1| flagellar biosynthetic protein FliP [Yersinia pestis Pestoides F]
 gi|149292645|gb|EDM42719.1| flagellar biosynthetic protein FliP [Yersinia pestis CA88-4125]
 gi|152961807|gb|ABS49268.1| flagellar biosynthetic protein FliP [Yersinia pseudotuberculosis IP
           31758]
 gi|165913316|gb|EDR31938.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922187|gb|EDR39364.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990296|gb|EDR42597.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166208080|gb|EDR52560.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166961733|gb|EDR57754.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167055231|gb|EDR65028.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169751161|gb|ACA68679.1| flagellar biosynthetic protein FliP [Yersinia pseudotuberculosis
           YPIII]
 gi|186698160|gb|ACC88789.1| flagellar biosynthetic protein FliP [Yersinia pseudotuberculosis
           PB1/+]
 gi|229680287|gb|EEO76386.1| flagellar biosynthetic protein FliP [Yersinia pestis Nepal516]
 gi|229688970|gb|EEO81035.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229693539|gb|EEO83588.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229701188|gb|EEO89217.1| flagellar biosynthetic protein FliP [Yersinia pestis Pestoides A]
 gi|262361801|gb|ACY58522.1| flagellar biosynthesis protein [Yersinia pestis D106004]
 gi|262366063|gb|ACY62620.1| flagellar biosynthesis protein [Yersinia pestis D182038]
 gi|270335131|gb|EFA45908.1| flagellar biosynthetic protein FliP [Yersinia pestis KIM D27]
 gi|294354472|gb|ADE64813.1| flagellar biosynthesis protein [Yersinia pestis Z176003]
 gi|320015442|gb|ADV99013.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 274

 Score =  184 bits (468), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 94/227 (41%), Positives = 146/227 (64%), Gaps = 6/227 (2%)

Query: 21  SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           + L  +++ P      +W   V+T    T LS  P  L+M+T F R IIV  +LR  MG 
Sbjct: 50  AQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLLRNAMGT 109

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
            S PPN V++ LALF+TF++MSP  D+  +    P   ++I+   A+ + ++P   FM  
Sbjct: 110 PSAPPNQVMLGLALFLTFFIMSPVFDKVYQEAYLPFSQDKISMDVALDKGSQPLREFMLR 169

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
            TRE DL+L+  +A+       +   + +  RIL+P+++ SEL+ +F+IGF + +PFLII
Sbjct: 170 QTRESDLALYARLANLP----PLEGPEMVPMRILLPAYVTSELKTAFQIGFTVFIPFLII 225

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           D++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 226 DLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 272


>gi|330972449|gb|EGH72515.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 250

 Score =  184 bits (468), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 92/201 (45%), Positives = 133/201 (66%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           I T LS  P  ++++T F R IIVFSILR  +G+   P N ++  +ALF+T ++M+P  D
Sbjct: 51  IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFD 110

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           R  +  +QP +  +++   A+ +   P   FM   TR  DL LFM ++    + TDI   
Sbjct: 111 RVNQDALQPYLAEKLSAQDAVAKAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTP 166

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D     IL+P+F+ISEL+ +F+IGF+I +PFLIIDM+VA+++MAMGMMML P  ISLPFK
Sbjct: 167 DAAPLTILVPAFVISELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFK 226

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW+L+V  L  SF
Sbjct: 227 IMLFVLVDGWALIVGTLAGSF 247


>gi|326796455|ref|YP_004314275.1| flagellar biosynthetic protein FliP [Marinomonas mediterranea
           MMB-1]
 gi|326547219|gb|ADZ92439.1| flagellar biosynthetic protein FliP [Marinomonas mediterranea
           MMB-1]
          Length = 251

 Score =  184 bits (468), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 89/201 (44%), Positives = 138/201 (68%), Gaps = 3/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           I T L++ P  LIM+T F R IIV SILR  +G+   P N +I+ +ALF+T ++M PTLD
Sbjct: 52  IMTALTLLPSALIMMTSFTRIIIVLSILRQALGLQQAPSNQIILGMALFLTLFIMGPTLD 111

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +  E  +QP +++ +T   A++  + P   FM   TRE D++LF+ +A    +   I   
Sbjct: 112 QINESALQPYLSDNMTSLQAVKAASIPIREFMLGQTREDDIALFVKLAG---KEGQIPSL 168

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           + + + IL+P+F+ SEL+ +F+IGF++ +PFLI+DM+VA+++MAMGMMML P  ISLPFK
Sbjct: 169 EDLPFTILMPAFVTSELKTAFQIGFMLFIPFLIVDMVVASVLMAMGMMMLSPIIISLPFK 228

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FV++DGWS+++  L  SF
Sbjct: 229 IMLFVMVDGWSMIMGTLAASF 249


>gi|238755315|ref|ZP_04616658.1| Flagellar biosynthetic protein fliP [Yersinia ruckeri ATCC 29473]
 gi|238706451|gb|EEP98825.1| Flagellar biosynthetic protein fliP [Yersinia ruckeri ATCC 29473]
          Length = 262

 Score =  184 bits (468), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 94/227 (41%), Positives = 146/227 (64%), Gaps = 6/227 (2%)

Query: 21  SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           + L  +++ P      +W   V+T  + T LS  P  L+M+T F R IIV  +LR  +G 
Sbjct: 38  AQLPGIISQPLANGGQSWSLPVQTLVLITSLSFLPAALLMMTSFTRIIIVLGLLRNALGT 97

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
            S PPN V++ LALF+TF++MSP  D+  +    P   ++I+   AI + A+P   FM  
Sbjct: 98  PSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMDIAIDKGAQPLREFMLR 157

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
            TRE DL+L+  +A+           + +  RIL+P+++ SEL+ +F+IGF + +PFLII
Sbjct: 158 QTRETDLALYARLANMPA----FEGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLII 213

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           D++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 214 DLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 260


>gi|260222420|emb|CBA31966.1| Flagellar biosynthetic protein fliP [Curvibacter putative symbiont
           of Hydra magnipapillata]
          Length = 218

 Score =  184 bits (467), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 92/207 (44%), Positives = 135/207 (65%), Gaps = 4/207 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++T   FT LS  P +L+M+T F R +IV S+LR  +G  S PPN VI+ L+LF+TF+VM
Sbjct: 15  IQTLLFFTALSFIPAVLLMMTGFTRIVIVLSLLRQALGTQSAPPNQVIVGLSLFLTFFVM 74

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            PT DR      QP     ++   A+Q+   P   FM   TR+ D SLF  +A       
Sbjct: 75  GPTFDRIYADAYQPYSQGTMSFDQALQKAEVPIRNFMVKQTRQSDFSLFAKLAKLPPD-- 132

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
              K D    R+L+P+F+ISEL+ +F+IGF+I +PFL+ID++VA+++M++GMMML P  +
Sbjct: 133 --MKADTAPIRVLVPAFVISELKSAFQIGFMIFIPFLVIDIVVASVLMSLGMMMLSPVLV 190

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +LPFK++ FVL DGW+LL+ +L  SF+
Sbjct: 191 ALPFKLMLFVLADGWNLLIGSLAASFV 217


>gi|330964683|gb|EGH64943.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 250

 Score =  184 bits (467), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 92/201 (45%), Positives = 133/201 (66%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           I T LS  P  ++++T F R IIVFSILR  +G+   P N ++  +ALF+T ++M+P  D
Sbjct: 51  IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFD 110

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           R  +  +QP +  ++T   A+ +   P   FM   TR  DL LFM ++    + TDI   
Sbjct: 111 RVNQDALQPYLAGKLTAQDAVAKAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTP 166

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D     IL+P+F+ISEL+ +F+IGF+I +PFLIID++VA+++MAMGMMML P  ISLPFK
Sbjct: 167 DAAPLTILVPAFVISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK 226

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW+L+V  L  SF
Sbjct: 227 IMLFVLVDGWALIVGTLAGSF 247


>gi|116694514|ref|YP_728725.1| flagellar biosynthesis protein FliP [Ralstonia eutropha H16]
 gi|113529013|emb|CAJ95360.1| flagellar biosynthesis protein [Ralstonia eutropha H16]
          Length = 261

 Score =  184 bits (467), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 98/224 (43%), Positives = 148/224 (66%), Gaps = 6/224 (2%)

Query: 25  DVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82
            V++ PA      W   V+T  + T LS  P  ++++T F R IIV  +LR+ +G  + P
Sbjct: 41  GVISKPAPGGGQIWSLPVQTLVLLTSLSFLPAAMLLMTGFTRIIIVLGLLRSALGTATSP 100

Query: 83  PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142
           PN V++ L+LF+TF+VM+P  DR      +PL  N+I+   A  + AEP   FM   TRE
Sbjct: 101 PNQVLVGLSLFLTFFVMAPVFDRVYNDAYKPLSENKISLEAAAAKAAEPLKAFMLRQTRE 160

Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202
           KDL++F  MA +     ++   + +   IL+P+F+ SEL+ +F+IGF I +PFLIID++V
Sbjct: 161 KDLAMFAQMAKAP----EMQGPEEVPLSILVPAFVTSELKTAFQIGFTIFIPFLIIDLVV 216

Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           A+++MAMGMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF+
Sbjct: 217 ASVLMAMGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSFM 260


>gi|224418310|ref|ZP_03656316.1| flagellar biosynthesis protein FliP [Helicobacter canadensis MIT
           98-5491]
 gi|253827632|ref|ZP_04870517.1| flagellar biosynthesis protein [Helicobacter canadensis MIT
           98-5491]
 gi|313141841|ref|ZP_07804034.1| flagellar biosynthesis protein [Helicobacter canadensis MIT
           98-5491]
 gi|253511038|gb|EES89697.1| flagellar biosynthesis protein [Helicobacter canadensis MIT
           98-5491]
 gi|313130872|gb|EFR48489.1| flagellar biosynthesis protein [Helicobacter canadensis MIT
           98-5491]
          Length = 250

 Score =  184 bits (467), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 97/218 (44%), Positives = 144/218 (66%), Gaps = 7/218 (3%)

Query: 28  NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87
           N PADL     I+    + T+L +AP L++M T F R +IVFS LRT +G    PP  ++
Sbjct: 39  NEPADL---VAILNIVVVLTLLVLAPSLILMATSFARLLIVFSFLRTALGTQQSPPTQLL 95

Query: 88  ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147
           +S AL +T ++M P      E G++P +  +I+   A  R ++PF  FM  NTR KDL+L
Sbjct: 96  VSFALILTMFIMEPVFKEGYEQGVKPYVAKEISYQEAFVRASQPFKDFMIRNTRPKDLAL 155

Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
           F  +    +  T       + + I +P+F+ISE++ +F+IGFL+ LPFL+IDM++++I+M
Sbjct: 156 FYRIRGMENPQT----AQDVPFTIALPAFIISEMKTAFQIGFLLYLPFLVIDMVISSILM 211

Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           AMGMMMLPPT ISLPFK++ F+L+DG++LL  NLV+SF
Sbjct: 212 AMGMMMLPPTMISLPFKILIFILVDGFNLLTMNLVESF 249


>gi|146282916|ref|YP_001173069.1| flagellar biosynthetic protein FliP [Pseudomonas stutzeri A1501]
 gi|145571121|gb|ABP80227.1| flagellar biosynthetic protein FliP [Pseudomonas stutzeri A1501]
          Length = 199

 Score =  184 bits (467), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 93/199 (46%), Positives = 130/199 (65%), Gaps = 4/199 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T LS  P  ++++T F R IIVFSILR  +G+   P N ++I L LF+T ++M+P  DR 
Sbjct: 2   TALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILIGLTLFLTLFIMAPVFDRI 61

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
            +  +QP ++ QI    AI R   P   FM   TRE DL LF+ ++      TDI   + 
Sbjct: 62  NQDALQPYLSEQIPAQEAIARAEVPLKNFMLAQTRESDLELFVRLSQ----RTDIASPEA 117

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
               IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA+++MAMGMMML P  ISLPFK++
Sbjct: 118 APMTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIM 177

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FVL+DGW L++  L  SF
Sbjct: 178 LFVLVDGWGLIIGTLAGSF 196


>gi|68343342|gb|AAY90948.1| flagellar biosynthetic protein FliP [Pseudomonas fluorescens Pf-5]
          Length = 241

 Score =  184 bits (467), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 90/201 (44%), Positives = 132/201 (65%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           I T LS  P  ++++T F R IIVFSILR  +G+   P N ++  +ALF+T ++M+P  D
Sbjct: 42  IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFD 101

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           R  +  +QP +  ++T   A+ +   P   FM   TR  DL LFM ++    + TDI   
Sbjct: 102 RVNQDALQPYLAEKLTAQDAVAKAQVPIKDFMLAQTRSSDLELFMRLS----KRTDIASP 157

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D     IL+P+F+ SEL+ +F+IGF+I +PFLIID++VA+++MAMGMMML P  ISLPFK
Sbjct: 158 DQAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK 217

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW+L++  L  SF
Sbjct: 218 IMLFVLVDGWALIIGTLAGSF 238


>gi|330961233|gb|EGH61493.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 250

 Score =  184 bits (467), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 92/201 (45%), Positives = 133/201 (66%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           I T LS  P  ++++T F R IIVFSILR  +G+   P N ++  +ALF+T ++M+P  D
Sbjct: 51  IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFD 110

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           R  +  +QP +  ++T   A+ +   P   FM   TR  DL LFM ++    + TDI   
Sbjct: 111 RVNQDALQPYLAEKLTAQDAVAKAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTP 166

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D     IL+P+F+ISEL+ +F+IGF+I +PFLIID++VA+++MAMGMMML P  ISLPFK
Sbjct: 167 DAAPLTILVPAFVISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK 226

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW+L+V  L  SF
Sbjct: 227 IMLFVLVDGWALIVGTLAGSF 247


>gi|71735211|ref|YP_275528.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555764|gb|AAZ34975.1| flagellar biosynthetic protein FliP [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320325127|gb|EFW81196.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329386|gb|EFW85379.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330889047|gb|EGH21708.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 250

 Score =  184 bits (467), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 103/248 (41%), Positives = 153/248 (61%), Gaps = 23/248 (9%)

Query: 9   LFLVTPELVFAKSSLHDVMNIPA-----------DLSISTWIVRTFGIFTILSIAPILLI 57
           L +VTP ++ A     D ++IPA           + S+S  I+    I T LS  P  ++
Sbjct: 12  LVMVTPAVLAA-----DPLSIPAITLSNGADGQQEYSVSLQILL---IMTALSFIPAFVM 63

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           ++T F R IIVFSILR  +G+   P N ++  +ALF+T ++M+P  DR  +  +QP +  
Sbjct: 64  LMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAE 123

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
           +++   A+ +   P   FM   TR  DL LFM ++    + TDI   D     IL+P+F+
Sbjct: 124 KLSAQDAVAKAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTPDAAPLTILVPAFV 179

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
           ISEL+ +F+IGF+I +PFLIID++VA+++MAMGMMML P  ISLPFK++ FVL+DGW+L+
Sbjct: 180 ISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALI 239

Query: 238 VENLVKSF 245
           V  L  SF
Sbjct: 240 VGTLAGSF 247


>gi|327399031|ref|YP_004339900.1| flagellar biosynthetic protein FliP [Hippea maritima DSM 10411]
 gi|327181660|gb|AEA33841.1| flagellar biosynthetic protein FliP [Hippea maritima DSM 10411]
          Length = 249

 Score =  184 bits (467), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 92/195 (47%), Positives = 134/195 (68%), Gaps = 4/195 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +LIM+T F R IIV +ILR  +G   +PPN ++I +ALF+T ++MSP ++   +   
Sbjct: 58  APSILIMMTSFTRIIIVLAILRQALGTQQMPPNQILIGIALFLTLFIMSPQINTIYKTAY 117

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
            PL  N+IT   A +   +P   FM   TR+KDL+LF+ +A   +          +   I
Sbjct: 118 LPLQKNEITLEGAYKNATKPLKTFMLKQTRQKDLALFLRIAKKPNPKNP----QELSMDI 173

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           +IP+F+ISEL+ +FE+GF+I +PFLIIDM+V++I+M+MGMMMLPP  ISLPFK++ FVL 
Sbjct: 174 VIPAFIISELKTAFEMGFIIYIPFLIIDMVVSSILMSMGMMMLPPIMISLPFKLLIFVLA 233

Query: 232 DGWSLLVENLVKSFI 246
           DGW+L+V +L KSF+
Sbjct: 234 DGWNLVVMSLFKSFM 248


>gi|328496288|gb|AEB21292.1| FliP [Yersinia ruckeri]
          Length = 263

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 94/227 (41%), Positives = 146/227 (64%), Gaps = 6/227 (2%)

Query: 21  SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           + L  +++ P      +W   V+T  + T LS  P  L+M+T F R IIV  +LR  +G 
Sbjct: 39  AQLPGIISQPLANGGQSWSLPVQTLVLITSLSFLPAALLMMTSFTRIIIVLGLLRNALGT 98

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
            S PPN V++ LALF+TF++MSP  D+  +    P   ++I+   AI + A+P   FM  
Sbjct: 99  PSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMDIAIDKGAQPLREFMLR 158

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
            TRE DL+L+  +A+           + +  RIL+P+++ SEL+ +F+IGF + +PFLII
Sbjct: 159 QTRETDLALYARLANMPA----FEGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLII 214

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           D++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 215 DLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 261


>gi|237750901|ref|ZP_04581381.1| flagellar biosynthesis protein FliP [Helicobacter bilis ATCC 43879]
 gi|229373346|gb|EEO23737.1| flagellar biosynthesis protein FliP [Helicobacter bilis ATCC 43879]
          Length = 275

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 93/202 (46%), Positives = 134/202 (66%), Gaps = 8/202 (3%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP L++M+T F R +IV   LRT +G    PP  V++SLA+ +TF++M P +  +  +GI
Sbjct: 71  APSLVLMMTSFTRILIVLGFLRTALGTQQSPPTQVLVSLAMILTFFIMEPVIKDAYNVGI 130

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD--ITKN----- 164
           +P M  +I    A +    PF  FM  NTR  D++LF  + +      D   TK      
Sbjct: 131 KPYMEEKIGYEEAFEETMRPFKKFMLMNTRHSDIALFYKIRNEEPPQMDNITTKEQFEAL 190

Query: 165 -DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
            D +   I++PSFMISEL+ +F+IGFL+ LPFL+IDM++A+++MAMGMMMLPP  ISLPF
Sbjct: 191 IDKVSLSIILPSFMISELKTAFQIGFLLYLPFLVIDMVIASVLMAMGMMMLPPVMISLPF 250

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K++ FVL+DG++LL+ NLV+SF
Sbjct: 251 KILIFVLVDGFNLLIWNLVRSF 272


>gi|123442774|ref|YP_001006751.1| flagellar biosynthesis protein FliP [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089735|emb|CAL12588.1| flagellar biosynthetic protein FliP [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 228

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 94/229 (41%), Positives = 147/229 (64%), Gaps = 6/229 (2%)

Query: 19  AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
           A + L  +++ P      +W   V+T    T LS  P  L+M+T F R IIV  +LR  +
Sbjct: 2   AMAQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLLRNAL 61

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G  S PPN V++ LALF+TF++MSP  D+  +    P   ++I+   A+ + ++P   FM
Sbjct: 62  GTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAMDKGSQPLREFM 121

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
              TRE DL+L+  +A+       +   + +  RIL+P+++ SEL+ +F+IGF + +PFL
Sbjct: 122 LRQTRESDLALYARLANLPP----LEGPEVVPLRILLPAYVTSELKTAFQIGFTVFIPFL 177

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IID++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 178 IIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 226


>gi|238758099|ref|ZP_04619279.1| Flagellar biosynthetic protein fliP [Yersinia aldovae ATCC 35236]
 gi|238703637|gb|EEP96174.1| Flagellar biosynthetic protein fliP [Yersinia aldovae ATCC 35236]
          Length = 249

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 95/229 (41%), Positives = 146/229 (63%), Gaps = 6/229 (2%)

Query: 19  AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
           A + L  +++ P      +W   V+T    T LS  P  L+M+T F R IIV  +LR  +
Sbjct: 23  ALAQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLLRNAL 82

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G  S PPN V++ L LF+TF++MSP  D+  +    P   ++I+   AI + A+P   FM
Sbjct: 83  GTPSAPPNQVMLGLTLFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAIDKGAQPLREFM 142

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
              TRE DL+L+  +A+       +   + +  RIL+P+++ SEL+ +F+IGF + +PFL
Sbjct: 143 LRQTRESDLALYARLANLPP----LEGPEVVPMRILLPAYVTSELKTAFQIGFTVFIPFL 198

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IID++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 199 IIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 247


>gi|254228442|ref|ZP_04921868.1| flagellar biosynthetic protein FliP, putative [Vibrio sp. Ex25]
 gi|262393598|ref|YP_003285452.1| flagellar biosynthesis protein FliP [Vibrio sp. Ex25]
 gi|151939030|gb|EDN57862.1| flagellar biosynthetic protein FliP, putative [Vibrio sp. Ex25]
 gi|262337192|gb|ACY50987.1| flagellar biosynthesis protein FliP [Vibrio sp. Ex25]
          Length = 289

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 93/214 (43%), Positives = 137/214 (64%), Gaps = 8/214 (3%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D S++  I+    + T+L   P ++I++T F R ++V SILR  MG+   P N VII +A
Sbjct: 82  DYSVTLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 138

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           LF+TF+VMSP L+   +  +QP +N Q+T   A      P   FM   TR KDL  F+ M
Sbjct: 139 LFLTFFVMSPVLNEINDKAVQPYLNEQVTAREAFDAAQAPMKAFMLKQTRIKDLETFVTM 198

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           +     N +      +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM
Sbjct: 199 SGEQVENPE-----DVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 253

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 254 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287


>gi|91223555|ref|ZP_01258820.1| flagellar biosynthesis protein P [Vibrio alginolyticus 12G01]
 gi|91191641|gb|EAS77905.1| flagellar biosynthesis protein P [Vibrio alginolyticus 12G01]
          Length = 289

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 93/214 (43%), Positives = 137/214 (64%), Gaps = 8/214 (3%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D S++  I+    + T+L   P ++I++T F R ++V SILR  MG+   P N VII +A
Sbjct: 82  DYSVTLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 138

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           LF+TF+VMSP L+   +  +QP +N Q+T   A      P   FM   TR KDL  F+ M
Sbjct: 139 LFLTFFVMSPVLNEINDKAVQPYLNEQVTAREAFDAAQAPMKAFMLKQTRIKDLETFVTM 198

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           +     N +      +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM
Sbjct: 199 SGEQVENPE-----DVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 253

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 254 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287


>gi|330876029|gb|EGH10178.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|331016991|gb|EGH97047.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 250

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 92/201 (45%), Positives = 133/201 (66%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           I T LS  P  ++++T F R IIVFSILR  +G+   P N ++  +ALF+T ++M+P  D
Sbjct: 51  IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFD 110

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           R  +  +QP +  ++T   A+ +   P   FM   TR  DL LFM ++    + TDI   
Sbjct: 111 RVNQDALQPYLAEKLTAQDAVAKAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTP 166

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D     IL+P+F+ISEL+ +F+IGF+I +PFLIID++VA+++MAMGMMML P  ISLPFK
Sbjct: 167 DAAPLTILVPAFVISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK 226

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW+L+V  L  SF
Sbjct: 227 IMLFVLVDGWALIVGTLAGSF 247


>gi|28869176|ref|NP_791795.1| flagellar biosynthetic protein FliP [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213967547|ref|ZP_03395695.1| flagellar biosynthetic protein FliP [Pseudomonas syringae pv.
           tomato T1]
 gi|301382884|ref|ZP_07231302.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           tomato Max13]
 gi|302061094|ref|ZP_07252635.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           tomato K40]
 gi|302131290|ref|ZP_07257280.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|28852416|gb|AAO55490.1| flagellar biosynthetic protein FliP [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213927848|gb|EEB61395.1| flagellar biosynthetic protein FliP [Pseudomonas syringae pv.
           tomato T1]
          Length = 250

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 92/201 (45%), Positives = 133/201 (66%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           I T LS  P  ++++T F R IIVFSILR  +G+   P N ++  +ALF+T ++M+P  D
Sbjct: 51  IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFD 110

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           R  +  +QP +  ++T   A+ +   P   FM   TR  DL LFM ++    + TDI   
Sbjct: 111 RVNQDALQPYLAEKLTAQDAVAKAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTP 166

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D     IL+P+F+ISEL+ +F+IGF+I +PFLIID++VA+++MAMGMMML P  ISLPFK
Sbjct: 167 DAAPLTILVPAFVISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK 226

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW+L+V  L  SF
Sbjct: 227 IMLFVLVDGWALIVGTLAGSF 247


>gi|258592488|emb|CBE68797.1| Flagellar transport protein FliP [NC10 bacterium 'Dutch sediment']
          Length = 243

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 88/201 (43%), Positives = 135/201 (67%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T+L++AP L+IM+T F R IIV S LRT MG   +PPN V+I L LF+TF+VM+P  +
Sbjct: 46  LLTLLAMAPALVIMLTSFSRIIIVLSFLRTAMGTQQMPPNQVLIGLTLFLTFFVMAPVGE 105

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +     +QP ++ Q+ +  A++R  +P   FM   TRE+DL+L + +A            
Sbjct: 106 QINREALQPYLSRQLAQEAALERALQPLRTFMFKQTRERDLALMVHLARLERPKDRAAVP 165

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
            H    +L+P++ ISELR +F+IGF++ +PFL+IDM+V++++++MGM+ LPP  IS PFK
Sbjct: 166 TH----VLVPAYAISELRTAFQIGFVLFIPFLVIDMVVSSVLISMGMLFLPPPVISFPFK 221

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL DGW L+V +LV  F
Sbjct: 222 LLLFVLADGWHLVVRSLVIGF 242


>gi|330861094|emb|CBX71361.1| flagellar biosynthetic protein fliP [Yersinia enterocolitica
           W22703]
          Length = 237

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 94/229 (41%), Positives = 147/229 (64%), Gaps = 6/229 (2%)

Query: 19  AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
           A + L  +++ P      +W   V+T    T LS  P  L+M+T F R IIV  +LR  +
Sbjct: 11  AMAQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLLRNAL 70

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G  S PPN V++ LALF+TF++MSP  D+  +    P   ++I+   A+ + ++P   FM
Sbjct: 71  GTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAMDKGSQPLREFM 130

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
              TRE DL+L+  +A+       +   + +  RIL+P+++ SEL+ +F+IGF + +PFL
Sbjct: 131 LRQTRESDLALYARLANLP----PLEGPEVVPLRILLPAYVTSELKTAFQIGFTVFIPFL 186

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IID++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 187 IIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 235


>gi|258514015|ref|YP_003190237.1| flagellar biosynthesis protein FliP [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257777720|gb|ACV61614.1| flagellar biosynthetic protein FliP [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 256

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 90/193 (46%), Positives = 131/193 (67%), Gaps = 4/193 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +L+M+T F R +IV S LR  +G    PPN V+I LALF+T ++M P  +   E  ++
Sbjct: 67  PAILLMMTSFTRIVIVLSFLRNALGTQQTPPNQVLIGLALFLTVFIMKPVYNDLNEQALK 126

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P + NQIT+  A  R A P   FM   TRE DL+LF+ +A +        +ND +   ++
Sbjct: 127 PYLANQITQEEAQNRAAGPLKEFMLKQTRESDLALFIGVAKAQKPQN---RND-VPLHLV 182

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           IP+F+ISEL+ SF++GFLI +PFL+ID +VA+ +M+MGM MLPP   SLPFK++ FV++D
Sbjct: 183 IPAFIISELKTSFQMGFLIYIPFLVIDAVVASTLMSMGMFMLPPAMFSLPFKLLLFVMVD 242

Query: 233 GWSLLVENLVKSF 245
           GW L+V++LV+SF
Sbjct: 243 GWYLVVKSLVESF 255


>gi|328958270|ref|YP_004375656.1| flagellar biosynthesis protein FliP [Carnobacterium sp. 17-4]
 gi|328674594|gb|AEB30640.1| flagellar biosynthesis protein FliP [Carnobacterium sp. 17-4]
          Length = 254

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 98/249 (39%), Positives = 157/249 (63%), Gaps = 16/249 (6%)

Query: 7   FALFLVT----PELVFAK------SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILL 56
           F LFL++    P++V A       S L + +   ++   ++ +V+ F + T LS+AP  L
Sbjct: 11  FTLFLMSSLLFPQVVTAAEITDGLSGLSEALG--SETGETSQVVQLFLLTTALSLAPTFL 68

Query: 57  IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
           ++ TCF R I+V S +R+ +G    PPNLV++ +ALF++ ++M P     +   I P +N
Sbjct: 69  VLTTCFTRIIVVLSFVRSSLGTQQNPPNLVLMGIALFLSLFIMQPVYTDVMNEAITPYIN 128

Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
            +I+   A +    P   FM   TR++D+ LF+D++ ++ +  D+     +   + IP+F
Sbjct: 129 EEISGQAAFESAELPIKEFMYKQTRDEDIQLFLDISETA-KPADV---KELPLTVAIPAF 184

Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
           +ISELR +F IGFLI +PFL+ID++VA+I+M+MGM ML P  ISLPFK++ FVL+DGW L
Sbjct: 185 IISELRTAFSIGFLIFIPFLVIDIVVASILMSMGMFMLSPVMISLPFKLLLFVLVDGWYL 244

Query: 237 LVENLVKSF 245
           +VE+LV  F
Sbjct: 245 VVESLVTGF 253


>gi|238788324|ref|ZP_04632118.1| Flagellar biosynthetic protein fliP [Yersinia frederiksenii ATCC
           33641]
 gi|238723570|gb|EEQ15216.1| Flagellar biosynthetic protein fliP [Yersinia frederiksenii ATCC
           33641]
          Length = 243

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 94/229 (41%), Positives = 147/229 (64%), Gaps = 6/229 (2%)

Query: 19  AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
           A + L  +++ P      +W   V+T    T LS  P  L+M+T F R IIV  +LR  +
Sbjct: 17  ALAQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLLRNAL 76

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G  S PPN V++ LALF+TF++MSP  D+  +    P   ++I+   A+ + ++P   FM
Sbjct: 77  GTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAMDKGSQPLREFM 136

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
              TRE DL+L+  +A+       +   + +  RIL+P+++ SEL+ +F+IGF + +PFL
Sbjct: 137 LRQTRESDLALYARLANIPA----LEGPEVVPMRILLPAYVTSELKTAFQIGFTVFIPFL 192

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IID++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 193 IIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 241


>gi|188592196|ref|YP_001796794.1| flagellar biosynthesis protein flip [Cupriavidus taiwanensis LMG
           19424]
 gi|170938570|emb|CAP63557.1| fliP: flagellar biosynthesis protein. fliP/mopC/spaP family
           [Cupriavidus taiwanensis LMG 19424]
          Length = 274

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 98/224 (43%), Positives = 147/224 (65%), Gaps = 6/224 (2%)

Query: 25  DVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82
            V++ PA      W   V+T  + T LS  P  ++M+T F R IIV  +LR  +G  + P
Sbjct: 54  GVISKPAPGGGQIWSLPVQTLVLLTSLSFLPAAMLMMTGFTRVIIVLGLLRNALGTATSP 113

Query: 83  PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142
           PN V++ L+LF+TF+VM+P  DR      +PL  N+++   A  + AEP   FM   TRE
Sbjct: 114 PNQVLVGLSLFLTFFVMAPVFDRVYNDAYKPLSENKLSLEAAAAKAAEPLKAFMLRQTRE 173

Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202
           KDL++F  MA +     ++   + +   IL+P+F+ SEL+ +F+IGF I +PFLIID++V
Sbjct: 174 KDLAMFAQMAKAP----EMQGPEEVPLSILVPAFVTSELKTAFQIGFTIFIPFLIIDLVV 229

Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           A+++MAMGMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF+
Sbjct: 230 ASVLMAMGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSFM 273


>gi|161501973|ref|YP_258777.2| flagellar biosynthesis protein FliP [Pseudomonas fluorescens Pf-5]
          Length = 249

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 90/201 (44%), Positives = 132/201 (65%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           I T LS  P  ++++T F R IIVFSILR  +G+   P N ++  +ALF+T ++M+P  D
Sbjct: 50  IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFD 109

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           R  +  +QP +  ++T   A+ +   P   FM   TR  DL LFM ++    + TDI   
Sbjct: 110 RVNQDALQPYLAEKLTAQDAVAKAQVPIKDFMLAQTRSSDLELFMRLS----KRTDIASP 165

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D     IL+P+F+ SEL+ +F+IGF+I +PFLIID++VA+++MAMGMMML P  ISLPFK
Sbjct: 166 DQAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK 225

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW+L++  L  SF
Sbjct: 226 IMLFVLVDGWALIIGTLAGSF 246


>gi|89899371|ref|YP_521842.1| flagellar biosynthesis protein FliP [Rhodoferax ferrireducens T118]
 gi|89344108|gb|ABD68311.1| flagellar biosynthetic protein FliP [Rhodoferax ferrireducens T118]
          Length = 260

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 93/217 (42%), Positives = 141/217 (64%), Gaps = 5/217 (2%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P+ +S S  I +T   FT LS  P +L+M+T F R +IV S++R  +G  S PPN VI+ 
Sbjct: 48  PSGVSFSVPI-QTLLFFTALSFLPAVLLMMTGFTRIVIVLSLMRQALGTQSAPPNQVIVG 106

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           L+LF+TF VM PTLD+       P  N+ +    A+ +  +P   FM   TR+ DL+LF 
Sbjct: 107 LSLFLTFLVMGPTLDKVYSEAYLPYTNSGMPFEQALAKAEDPLRQFMSKQTRQSDLALFA 166

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
            +A      T  T    +  R+L+P+F+ SEL+ +F+IGF+I +PFL+ID++VA+++M++
Sbjct: 167 KLAKLEPGATAQT----VPMRVLVPAFVTSELKSAFQIGFMIFIPFLVIDIVVASVLMSL 222

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           GMMML P  ++LPFK++ FVL DGW+LL+ +L  SF+
Sbjct: 223 GMMMLSPVLVALPFKLMLFVLADGWNLLIGSLAASFV 259


>gi|254457934|ref|ZP_05071361.1| flagellar biosynthetic protein FliP [Campylobacterales bacterium GD
           1]
 gi|207085327|gb|EDZ62612.1| flagellar biosynthetic protein FliP [Campylobacterales bacterium GD
           1]
          Length = 244

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 92/193 (47%), Positives = 133/193 (68%), Gaps = 4/193 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +++++T F RF+IVF  LR  +G   VPP  +++ LA+ +TF+VM P   ++ + GI
Sbjct: 54  APSMVLVMTTFTRFVIVFGFLRQALGTQQVPPTQLLVMLAMILTFFVMEPIGQKAYDNGI 113

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           +P +  +I    A ++   PF  FM  NTREKDL+LF  +    +  T       +   +
Sbjct: 114 KPYIEEKIGYEEAFEKSTLPFKNFMIRNTREKDLALFFRIRGMENPAT----VSDVPLSV 169

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           +IPSF+ISEL+ +FEIGFL+ LPFL+IDM+VA+I+M+MGMMMLPP  ISLPFK++ FVLI
Sbjct: 170 IIPSFVISELKTAFEIGFLLFLPFLVIDMVVASILMSMGMMMLPPVMISLPFKILVFVLI 229

Query: 232 DGWSLLVENLVKS 244
           DGWSLL+ NL+ +
Sbjct: 230 DGWSLLIGNLIAT 242


>gi|307264883|ref|ZP_07546445.1| flagellar biosynthetic protein FliP [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|326389467|ref|ZP_08211034.1| flagellar biosynthetic protein FliP [Thermoanaerobacter ethanolicus
           JW 200]
 gi|306920141|gb|EFN50353.1| flagellar biosynthetic protein FliP [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|325994472|gb|EGD52897.1| flagellar biosynthetic protein FliP [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 221

 Score =  183 bits (465), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 90/194 (46%), Positives = 132/194 (68%), Gaps = 5/194 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +LIM+T F R ++V S LR  +G+  +PPN V+I LALF+T Y+M+P         I
Sbjct: 32  APSILIMMTSFTRIVVVLSFLRNALGLQQMPPNQVLIGLALFLTLYIMAPVGQDINNNAI 91

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           +P    +IT+  A Q   +P   FM   TR+ DL+LF+ +A     N +      +  R+
Sbjct: 92  KPYTEGKITQEEAYQNAIKPLKNFMLKQTRQSDLNLFVSLAKIKVNNAE-----DLPMRV 146

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           +IPSF+ISEL+ +FEIGF+I +PFLIID++VA+++M+MGM MLPP  ISLPFKV+ F+L+
Sbjct: 147 VIPSFIISELKTAFEIGFIIYIPFLIIDIVVASVLMSMGMFMLPPVLISLPFKVLLFILV 206

Query: 232 DGWSLLVENLVKSF 245
           DGW+L+V++L+  F
Sbjct: 207 DGWNLVVKSLILGF 220


>gi|126463729|ref|YP_001044843.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides ATCC
           17029]
 gi|126105393|gb|ABN78071.1| flagellar biosynthetic protein FliP [Rhodobacter sphaeroides ATCC
           17029]
          Length = 238

 Score =  183 bits (465), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 91/212 (42%), Positives = 135/212 (63%), Gaps = 5/212 (2%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           S++   V+   + T+LS+ P L +M+TCFP  + V SILR  +G+   PPN++I+SLALF
Sbjct: 31  SLTARSVQLIAVITLLSLVPALAMMITCFPFIVTVLSILRQAIGLQQAPPNMLIVSLALF 90

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           +T+YVM P    +   GI PL  N++    A+   A PF  FM        L+     A 
Sbjct: 91  LTWYVMDPVFTEAWTRGIGPLTRNELDLPQALAAAAVPFRGFMTGRIDPDTLA-----AL 145

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
            + R           + +L+PSF++SE++R+FEIGFLI LPFLIID++V+ ++M+MGMMM
Sbjct: 146 QALRPGPAAPPSEASFSVLVPSFLLSEIQRAFEIGFLIYLPFLIIDLVVSAVLMSMGMMM 205

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +PP  +S+PFK+ FFV+ DGWSL+   LV+S+
Sbjct: 206 VPPAVVSMPFKLAFFVVADGWSLISGALVRSY 237


>gi|260776473|ref|ZP_05885368.1| flagellar biosynthesis protein FliP [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607696|gb|EEX33961.1| flagellar biosynthesis protein FliP [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 244

 Score =  183 bits (465), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 91/206 (44%), Positives = 136/206 (66%), Gaps = 5/206 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   + T+L   P ++I++T F R ++V SILR  MG+   P N VII +A+F+TF++M
Sbjct: 42  LQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIAIFLTFFIM 101

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP L+   +  IQP +N QIT   A      P   FM   TR KDL  F++++ S     
Sbjct: 102 SPVLNEINDKAIQPYINEQITARQAFDVAQAPMKDFMLKQTRVKDLETFVNISGS----- 156

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           D T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGMMML P  +
Sbjct: 157 DATAPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGMMMLSPMIV 216

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 217 SLPFKLMLFVLVDGWNLILSTLAGSF 242


>gi|304316893|ref|YP_003852038.1| flagellar biosynthetic protein FliP [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778395|gb|ADL68954.1| flagellar biosynthetic protein FliP [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 249

 Score =  183 bits (465), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 93/194 (47%), Positives = 136/194 (70%), Gaps = 5/194 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +LIM+T F R I+V S LR  +G+  +PPN V+I L+LF+TF++M+P   +     I
Sbjct: 60  APSILIMMTSFTRIIVVLSFLRNALGLQQMPPNQVLIGLSLFLTFFIMAPVGVQINNDSI 119

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           QP M  +IT   A  +  +P   FM   TR+ DL+LF+++A    ++     ND I  R+
Sbjct: 120 QPYMQGKITPQVAYVKARDPLKNFMLKQTRKNDLNLFINLAKIKVKSV----ND-IPLRV 174

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           +IPSF+ISEL+ +FEIGF+I +PFLIIDM+VA+++M+MGM MLPP  ISLPFK++ F+L+
Sbjct: 175 VIPSFIISELKTAFEIGFIIYIPFLIIDMVVASVLMSMGMFMLPPVLISLPFKLLLFILV 234

Query: 232 DGWSLLVENLVKSF 245
           DGW++L ++LV  F
Sbjct: 235 DGWNILAKSLVIGF 248


>gi|30248477|ref|NP_840547.1| flagellar biosynthesis protein FliP [Nitrosomonas europaea ATCC
           19718]
 gi|30138363|emb|CAD84372.1| Flagella transport protein FliP family [Nitrosomonas europaea ATCC
           19718]
          Length = 268

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 87/193 (45%), Positives = 134/193 (69%), Gaps = 4/193 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +++M++ F R IIV S+LR  MG  S PPN V++ LALF++F++MSP +D+       
Sbjct: 78  PAVILMMSSFTRIIIVLSLLRQAMGTQSSPPNQVLLGLALFLSFFIMSPVIDKVYTEAYL 137

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P   ++I+   A+++  +P   FM   TRE D++LF  +A     N +I   D +  +IL
Sbjct: 138 PFSEDKISIVEAMEKAGDPLKSFMLRQTREADIALFARIAE----NGEIESPDQVPMKIL 193

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           +P+++ SEL+ +F+IGF++ +PFLIIDM+VA+ +MAMGMMML P  ISLPFK++ FVL+D
Sbjct: 194 VPAYITSELKTAFQIGFVVFIPFLIIDMVVASTLMAMGMMMLSPMIISLPFKLMLFVLVD 253

Query: 233 GWSLLVENLVKSF 245
           GW+LL+ +L +SF
Sbjct: 254 GWNLLIGSLTQSF 266


>gi|251772432|gb|EES52999.1| flagellar biosynthetic protein FliP [Leptospirillum
           ferrodiazotrophum]
          Length = 272

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 91/194 (46%), Positives = 135/194 (69%), Gaps = 3/194 (1%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +L+M+T F R ++V S LR  +G   VPPN V++ L+LF+TF++M+P         I
Sbjct: 81  APAILVMMTSFTRIVVVLSFLRQALGTAQVPPNQVMVGLSLFLTFFIMAPVWQTMNRTAI 140

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           QP +  +I    A+ R   P   FM    R+KDL++F  +AH     T  +++D   Y +
Sbjct: 141 QPYLAKEIAPDVALTRGMAPVRDFMFRQVRKKDLAMFERIAHLP--ETPASRDDIPTY-V 197

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           LIP+F++SEL  +FE+GFLI LPFLI+D++V++++M+MGMMMLPPT +SLPFK++ FVL+
Sbjct: 198 LIPAFVVSELSTAFEMGFLIYLPFLILDVVVSSVLMSMGMMMLPPTVVSLPFKILLFVLV 257

Query: 232 DGWSLLVENLVKSF 245
           DGWSL+V +LV+SF
Sbjct: 258 DGWSLIVGSLVQSF 271


>gi|299068762|emb|CBJ40002.1| fliP: flagellar biosynthesis protein. fliP/mopC/spaP family
           [Ralstonia solanacearum CMR15]
          Length = 249

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 95/206 (46%), Positives = 134/206 (65%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T    T L   P +L+M++ F R IIV S+LR  +G  + PPN V+I LALF+TF+VM
Sbjct: 46  VQTLVFLTSLGFLPAILLMMSSFTRIIIVLSLLRHALGTQTTPPNQVLIGLALFLTFFVM 105

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP LD+       PL +++I+   A+   A P   FM   TRE DL+LF  M +      
Sbjct: 106 SPVLDKVYTDAYLPLRDSKISVEQALDTAATPLRQFMLKQTREPDLALFAKMGNLP---- 161

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            I   D +  R LIP+F+ SEL+ SF+IGF I +PFL+ID++VA ++M+MGMMM+ P+  
Sbjct: 162 PIASPDQVPMRALIPAFVTSELKTSFQIGFAIFIPFLVIDIVVAAVLMSMGMMMVTPSIF 221

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 222 SLPFKIMLFVLVDGWHLLLGSLAQSF 247


>gi|66046673|ref|YP_236514.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           syringae B728a]
 gi|289678972|ref|ZP_06499862.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           syringae FF5]
 gi|63257380|gb|AAY38476.1| Flagellar transport protein FliP [Pseudomonas syringae pv. syringae
           B728a]
 gi|330899441|gb|EGH30860.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           japonica str. M301072PT]
 gi|330976008|gb|EGH76074.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 250

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 91/201 (45%), Positives = 133/201 (66%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           I T LS  P  ++++T F R IIVFSILR  +G+   P N ++  +ALF+T ++M+P  D
Sbjct: 51  IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQAPSNQILTGMALFLTMFIMAPVFD 110

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           R  +  +QP +  +++   A+ +   P   FM   TR  DL LFM ++    + TDI   
Sbjct: 111 RVNQDALQPYLAEKLSAQDAVAKAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTP 166

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D     IL+P+F+ISEL+ +F+IGF+I +PFLIID++VA+++MAMGMMML P  ISLPFK
Sbjct: 167 DAAPLTILVPAFVISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK 226

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW+L+V  L  SF
Sbjct: 227 IMLFVLVDGWALIVGTLAGSF 247


>gi|254506844|ref|ZP_05118983.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus 16]
 gi|219550129|gb|EED27115.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus 16]
          Length = 244

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 89/206 (43%), Positives = 138/206 (66%), Gaps = 5/206 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   + T+L   P ++I++T F R ++V SILR  MG+   P N VII +A+F+TF++M
Sbjct: 42  LQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIAIFLTFFIM 101

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP L++  ++ +QP +N QIT   A      P   FM   TR KDL  F++++ S+    
Sbjct: 102 SPVLNKINDVAVQPYINEQITAREAFDLAQAPMKDFMLKQTRVKDLETFVNISGSTA--- 158

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
             T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGMMML P  +
Sbjct: 159 --TAPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGMMMLSPMIV 216

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 217 SLPFKLMLFVLVDGWNLILSTLAGSF 242


>gi|238782830|ref|ZP_04626859.1| Flagellar biosynthetic protein fliP [Yersinia bercovieri ATCC
           43970]
 gi|238716253|gb|EEQ08236.1| Flagellar biosynthetic protein fliP [Yersinia bercovieri ATCC
           43970]
          Length = 257

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 100/238 (42%), Positives = 158/238 (66%), Gaps = 13/238 (5%)

Query: 8   ALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67
           +++    +L+ A+S+  +  ++P         V+T  + T L+  P +L+M+T F R II
Sbjct: 31  SVWAANADLMVARSADGENWSLP---------VQTLVLLTSLTFLPAILLMMTGFTRIII 81

Query: 68  VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
           V  +LR  +G  S PPN V+++LALF+TFYVMSP  ++  +   QPL  ++I+  TA++R
Sbjct: 82  VLGLLRNALGTPSTPPNQVLLALALFLTFYVMSPVFNQIYKEAWQPLSEDKISMETALER 141

Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
             +P  VFM   TRE DL+L+  MA    +  +    D +  R+L+P+F+ SEL+  F+I
Sbjct: 142 GVQPLRVFMLEQTRESDLALYARMA----KEENFQSKDDVPLRVLLPAFVTSELKTGFQI 197

Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GF + +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 198 GFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLMGSLAQSF 255


>gi|238764402|ref|ZP_04625352.1| Flagellar biosynthetic protein fliP [Yersinia kristensenii ATCC
           33638]
 gi|238697428|gb|EEP90195.1| Flagellar biosynthetic protein fliP [Yersinia kristensenii ATCC
           33638]
          Length = 243

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 94/229 (41%), Positives = 147/229 (64%), Gaps = 6/229 (2%)

Query: 19  AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
           A + L  +++ P      +W   V+T    T LS  P  L+M+T F R IIV  +LR  +
Sbjct: 17  ALAQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLLRNAL 76

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G  S PPN V++ LALF+TF++MSP  D+  +    P   ++I+   A+ + ++P   FM
Sbjct: 77  GTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAMDKGSQPLREFM 136

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
              TRE DL+L+  +A+       +   + +  RIL+P+++ SEL+ +F+IGF + +PFL
Sbjct: 137 LRQTRESDLALYARLANLPP----LEGPEVVPMRILLPAYVTSELKTAFQIGFTVFIPFL 192

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IID++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 193 IIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 241


>gi|169827136|ref|YP_001697294.1| flagellar biosynthesis protein FliP [Lysinibacillus sphaericus
           C3-41]
 gi|168991624|gb|ACA39164.1| Flagellar biosynthetic protein [Lysinibacillus sphaericus C3-41]
          Length = 221

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 89/194 (45%), Positives = 135/194 (69%), Gaps = 4/194 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +LI++T F R +IV S +RT +    +PPN VI+ LALF+TF++M+PT     +  +
Sbjct: 32  APSILILMTSFARIVIVLSFVRTALATQQMPPNQVIVGLALFLTFFIMAPTFQEVNKEAL 91

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           QPL + +I    A  R + PF  FM  +TR+KDL LF+    S ++       + I   +
Sbjct: 92  QPLFSEEIGLEEAYDRASLPFKEFMSKHTRQKDLDLFL----SYNQAEKPASVEEIPLTM 147

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           L+P+F +SE++ +F+IGF+I +PFL+IDMIVA+ +M+MGMMMLPP  ISLPFK++ FVL+
Sbjct: 148 LVPAFALSEIKTAFQIGFMIFIPFLVIDMIVASTLMSMGMMMLPPVMISLPFKILLFVLV 207

Query: 232 DGWSLLVENLVKSF 245
           DGW L++++L++SF
Sbjct: 208 DGWYLVMKSLLQSF 221


>gi|226941268|ref|YP_002796342.1| flagellar biosynthesis protein FliP [Laribacter hongkongensis
           HLHK9]
 gi|226716195|gb|ACO75333.1| FliP [Laribacter hongkongensis HLHK9]
          Length = 251

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 89/199 (44%), Positives = 138/199 (69%), Gaps = 4/199 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T L+  P LL+M+T F R +IV S+LR  +G+   PPN VI+ L+LF+T +VM+P  D++
Sbjct: 54  TSLTFIPALLLMMTAFTRIVIVLSLLRQAIGLMQSPPNQVIVGLSLFLTLFVMAPVFDQA 113

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
                 P  ++Q+    A ++  +PF  FM   TREKDL+ F+++A  +   T       
Sbjct: 114 YREAWLPYSDSQMNFMQAAEKGVQPFKGFMLKQTREKDLAFFVEIAREAPPATP----AD 169

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
           +  + LIP+F++SEL+ +F+IGF++ +PFLIID++VA+++MAMGMMM+ P  ISLPFK++
Sbjct: 170 VSLKTLIPAFVVSELKTAFQIGFMVFIPFLIIDLVVASVLMAMGMMMVSPVIISLPFKLM 229

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FVL+DGW+LL+ +LV+SF
Sbjct: 230 LFVLVDGWTLLIGSLVQSF 248


>gi|207728358|ref|YP_002256752.1| flagellar biosynthetic protein flip [Ralstonia solanacearum MolK2]
 gi|206591604|emb|CAQ57216.1| flagellar biosynthetic protein flip [Ralstonia solanacearum MolK2]
          Length = 252

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 95/206 (46%), Positives = 134/206 (65%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T    T L   P +L+M++ F R IIV S+LR  +G  + PPN V+I LALF+TF+VM
Sbjct: 49  VQTLVFLTSLGFLPAILLMMSSFTRIIIVLSLLRHALGTQTTPPNQVLIGLALFLTFFVM 108

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP LD+       PL +++I+   A+   A P   FM   TRE DL+LF  M +      
Sbjct: 109 SPVLDKVYTDAYVPLRDSKISVEQALDTAATPLRQFMLKQTREPDLALFAKMGNLP---- 164

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            I   D +  R LIP+F+ SEL+ SF+IGF I +PFL+ID++VA ++M+MGMMM+ P+  
Sbjct: 165 PIASPDQVPMRALIPAFVTSELKTSFQIGFAIFIPFLVIDIVVAAVLMSMGMMMVTPSIF 224

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 225 SLPFKIMLFVLVDGWHLLLGSLAQSF 250


>gi|119476307|ref|ZP_01616658.1| flagellar biosynthesis protein [marine gamma proteobacterium
           HTCC2143]
 gi|119450171|gb|EAW31406.1| flagellar biosynthesis protein [marine gamma proteobacterium
           HTCC2143]
          Length = 270

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 87/209 (41%), Positives = 141/209 (67%), Gaps = 4/209 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           T  ++   + T+L++ P  L+M+T F R I+V +ILR  +G+ S P N +I+ LA+F+T 
Sbjct: 64  TVTIQILAVMTVLTLLPSFLMMMTAFTRVIVVLAILRQAIGLQSTPSNQIILGLAIFLTI 123

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           ++M P  +++    +QP MN +IT   AI   ++PF  FM + TRE DL LFM ++++  
Sbjct: 124 FIMLPVFEQANTQALQPYMNEKITSLEAIDAASKPFHEFMLSQTRETDLDLFMRISNT-- 181

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
             T I   +   + +L P+F+ SEL+ +F++GF++ +PFL+ID++VA+++MAMGMMML P
Sbjct: 182 --TGIQTPEETPFFVLAPAFLTSELKTAFQMGFVLFIPFLVIDLVVASVLMAMGMMMLSP 239

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             ISLPFK++ FVL+DGW ++V  L  S+
Sbjct: 240 IIISLPFKIMLFVLVDGWVMIVGTLAASY 268


>gi|220929452|ref|YP_002506361.1| flagellar biosynthesis protein FliP [Clostridium cellulolyticum
           H10]
 gi|219999780|gb|ACL76381.1| flagellar biosynthetic protein FliP [Clostridium cellulolyticum
           H10]
          Length = 266

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 98/206 (47%), Positives = 137/206 (66%), Gaps = 9/206 (4%)

Query: 46  FTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDR 105
            T+L+IAP +LIM+T F R II+ S LR  +G   +PPN V+I LALF+T +VMSP L  
Sbjct: 62  LTVLAIAPSILIMMTGFTRIIIILSFLRNALGTQQMPPNQVLIGLALFITLFVMSPVLSD 121

Query: 106 SIEMGIQPLMNNQITETTAIQRVAEPFWVFMR----NNTREKDLSLFMDMAHSSH--RNT 159
             E   QP  + +IT+  AI + ++    +M     +N REKDL LFM +       R  
Sbjct: 122 INENAFQPYSDGKITQQQAIDKSSQTIKTWMVKQIFSNNREKDLELFMTLGGQKDPIRVQ 181

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           D +K   +   I+ P+F+ISEL  +F+ GFLI LPFLIIDM+V++ +M+MGMMMLPP  I
Sbjct: 182 DASK---LSLTIVAPAFLISELTIAFKFGFLIFLPFLIIDMVVSSALMSMGMMMLPPIMI 238

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGWS+L ++++ SF
Sbjct: 239 SLPFKILLFVLVDGWSMLTQSIITSF 264


>gi|15895419|ref|NP_348768.1| flagellar biosynthesis protein FliP [Clostridium acetobutylicum
           ATCC 824]
 gi|15025142|gb|AAK80108.1|AE007715_13 Flagellar biosynthesis protein FliP [Clostridium acetobutylicum
           ATCC 824]
 gi|325509565|gb|ADZ21201.1| flagellar biosynthesis protein FliP [Clostridium acetobutylicum EA
           2018]
          Length = 261

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 89/193 (46%), Positives = 136/193 (70%), Gaps = 4/193 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +++M+T F R I+V   LRT MG    PPN V+I LALF+T ++M PT  +  +  IQ
Sbjct: 71  PSIIMMMTSFTRIIVVLGFLRTSMGTQQSPPNQVLIGLALFLTMFIMMPTYKQINKNAIQ 130

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P +N  I++  A+  + +P   FM   T +KDL LF+D+ + S +   ITK D + +  +
Sbjct: 131 PYLNKSISQQQALLEMEKPLRTFMYKQTYQKDLKLFIDLDNQSGK---ITK-DTVPFHDI 186

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           +P+F+ISEL+ +F IGFL+ +PFLIID++VA+I+M+MGMMMLPP  +S+PFK++ F+++D
Sbjct: 187 VPAFIISELKTAFTIGFLLYIPFLIIDLVVASILMSMGMMMLPPVMVSMPFKLLLFIMVD 246

Query: 233 GWSLLVENLVKSF 245
           GW L+V++LV SF
Sbjct: 247 GWYLIVKSLVLSF 259


>gi|83747643|ref|ZP_00944679.1| FliP [Ralstonia solanacearum UW551]
 gi|207739724|ref|YP_002258117.1| flagellar biosynthetic protein flip [Ralstonia solanacearum
           IPO1609]
 gi|83725695|gb|EAP72837.1| FliP [Ralstonia solanacearum UW551]
 gi|206593106|emb|CAQ60012.1| flagellar biosynthetic protein flip [Ralstonia solanacearum
           IPO1609]
          Length = 249

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 95/206 (46%), Positives = 134/206 (65%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T    T L   P +L+M++ F R IIV S+LR  +G  + PPN V+I LALF+TF+VM
Sbjct: 46  VQTLVFLTSLGFLPAILLMMSSFTRIIIVLSLLRHALGTQTTPPNQVLIGLALFLTFFVM 105

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP LD+       PL +++I+   A+   A P   FM   TRE DL+LF  M +      
Sbjct: 106 SPVLDKVYTDAYVPLRDSKISVEQALDTAATPLRQFMLKQTREPDLALFAKMGNLP---- 161

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            I   D +  R LIP+F+ SEL+ SF+IGF I +PFL+ID++VA ++M+MGMMM+ P+  
Sbjct: 162 PIASPDQVPMRALIPAFVTSELKTSFQIGFAIFIPFLVIDIVVAAVLMSMGMMMVTPSIF 221

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 222 SLPFKIMLFVLVDGWHLLLGSLAQSF 247


>gi|300696945|ref|YP_003747606.1| fliP: flagellar biosynthesis protein. fliP/mopC/spaP family
           [Ralstonia solanacearum CFBP2957]
 gi|299073669|emb|CBJ53189.1| fliP: flagellar biosynthesis protein. fliP/mopC/spaP family
           [Ralstonia solanacearum CFBP2957]
          Length = 249

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 95/206 (46%), Positives = 134/206 (65%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T    T L   P +L+M++ F R IIV S+LR  +G  + PPN V+I LALF+TF+VM
Sbjct: 46  VQTLVFLTSLGFLPAILLMMSSFTRIIIVLSLLRHALGTQTTPPNQVLIGLALFLTFFVM 105

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP LD+       PL +++I+   A+   A P   FM   TRE DL+LF  M +      
Sbjct: 106 SPVLDKVYTDAYVPLRDSKISVEQALDTAATPLRQFMLKQTREPDLALFAKMGNLP---- 161

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            I   D +  R LIP+F+ SEL+ SF+IGF I +PFL+ID++VA ++M+MGMMM+ P+  
Sbjct: 162 PIASPDQVPMRALIPAFVTSELKTSFQIGFAIFIPFLVIDIVVAAVLMSMGMMMVTPSIF 221

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 222 SLPFKIMLFVLVDGWHLLLGSLAQSF 247


>gi|237799248|ref|ZP_04587709.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022103|gb|EGI02160.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 250

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 103/245 (42%), Positives = 152/245 (62%), Gaps = 17/245 (6%)

Query: 9   LFLVTPELVFAKSSLHDVMNIPA-DLSISTWIVRTFG-------IFTILSIAPILLIMVT 60
           L +V P ++ A     D ++IPA  LS ST   + +        I T LS  P  ++++T
Sbjct: 12  LVMVAPAVLAA-----DPLSIPAITLSNSTDGQQEYSVSLQILLIMTALSFIPAFVMLMT 66

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R IIVFSILR  +G+   P N ++  +ALF+T ++M+P  DR  +  +QP +  +++
Sbjct: 67  SFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKLS 126

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A+ +   P   FM   TR  DL LFM ++    + TDI   D     IL+P+F+ISE
Sbjct: 127 AQDAVAKAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTPDAAPLTILVPAFVISE 182

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +F+IGF+I +PFLIID++VA+++MAMGMMML P  ISLPFK++ FVL+DGW+L+V  
Sbjct: 183 LKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIVGT 242

Query: 241 LVKSF 245
           L  SF
Sbjct: 243 LAGSF 247


>gi|241763645|ref|ZP_04761695.1| flagellar biosynthetic protein FliP [Acidovorax delafieldii 2AN]
 gi|241367120|gb|EER61486.1| flagellar biosynthetic protein FliP [Acidovorax delafieldii 2AN]
          Length = 263

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 91/207 (43%), Positives = 138/207 (66%), Gaps = 4/207 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++T   FT LS  P +L+M+T F R +IV S+LR  +G  S PPN VII L+LF+TF+VM
Sbjct: 60  IQTLLFFTALSFLPAVLLMMTGFTRIVIVLSLLRQALGTQSAPPNQVIIGLSLFLTFFVM 119

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            PTLD+  +    P   N I+   A+++   P   FM   TR+ D +LF  +A     + 
Sbjct: 120 GPTLDKVYQDAYLPYTTNTISFEAALEKAEAPMRSFMLKQTRQSDFALFSRLAK---LDV 176

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +T  +    R+L+P+F+ SEL+ +F+IGF+I +PFL+IDM+V++I+M++GMMML P  +
Sbjct: 177 SVTA-ETAPLRVLVPAFVTSELKSAFQIGFMIFIPFLVIDMVVSSILMSLGMMMLSPVLV 235

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +LPFK++ FVL DGW+LL+ +L  SF+
Sbjct: 236 ALPFKLMLFVLADGWNLLIGSLAASFV 262


>gi|330953762|gb|EGH54022.1| flagellar biosynthesis protein FliP [Pseudomonas syringae Cit 7]
          Length = 250

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 91/201 (45%), Positives = 133/201 (66%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           I T LS  P  ++++T F R IIVFSILR  +G+   P N ++  +ALF+T ++M+P  D
Sbjct: 51  IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFD 110

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           R  +  +QP +  +++   A+ +   P   FM   TR  DL LFM ++    + TDI   
Sbjct: 111 RVNQDALQPYLAEKLSAQDAVAKAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTP 166

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D     IL+P+F+ISEL+ +F+IGF+I +PFLIID++VA+++MAMGMMML P  ISLPFK
Sbjct: 167 DAAPLTILVPAFVISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK 226

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW+L+V  L  SF
Sbjct: 227 IMLFVLVDGWALIVGTLAGSF 247


>gi|126653733|ref|ZP_01725651.1| flagellar biosynthesis protein P [Bacillus sp. B14905]
 gi|126589697|gb|EAZ83833.1| flagellar biosynthesis protein P [Bacillus sp. B14905]
          Length = 221

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 89/194 (45%), Positives = 135/194 (69%), Gaps = 4/194 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +LI++T F R +IV S +RT +    +PPN VI+ LALF+TF++M+PT     +  +
Sbjct: 32  APSILILMTSFARIVIVLSFVRTALATQQMPPNQVIVGLALFLTFFIMAPTFQEVNKEAL 91

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           QPL + +I    A  R + PF  FM  +TR+KDL LF+    S ++       + I   +
Sbjct: 92  QPLFSEEIGLDEAYDRASLPFKEFMSKHTRQKDLDLFL----SYNQAEKPASVEEIPLTM 147

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           L+P+F +SE++ +F+IGF+I +PFL+IDMIVA+ +M+MGMMMLPP  ISLPFK++ FVL+
Sbjct: 148 LVPAFALSEIKTAFQIGFMIFIPFLVIDMIVASTLMSMGMMMLPPVMISLPFKILLFVLV 207

Query: 232 DGWSLLVENLVKSF 245
           DGW L++++L++SF
Sbjct: 208 DGWYLVMKSLLQSF 221


>gi|302185375|ref|ZP_07262048.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           syringae 642]
          Length = 250

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 91/201 (45%), Positives = 133/201 (66%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           I T LS  P  ++++T F R IIVFSILR  +G+   P N ++  +ALF+T ++M+P  D
Sbjct: 51  IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFD 110

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           R  +  +QP +  +++   A+ +   P   FM   TR  DL LFM ++    + TDI   
Sbjct: 111 RVNQDALQPYLAEKLSAQDAVAKAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTP 166

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D     IL+P+F+ISEL+ +F+IGF+I +PFLIID++VA+++MAMGMMML P  ISLPFK
Sbjct: 167 DAAPLTILVPAFVISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK 226

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW+L+V  L  SF
Sbjct: 227 IMLFVLVDGWALIVGTLAGSF 247


>gi|160896097|ref|YP_001561679.1| flagellar biosynthesis protein FliP [Delftia acidovorans SPH-1]
 gi|160361681|gb|ABX33294.1| flagellar biosynthetic protein FliP [Delftia acidovorans SPH-1]
          Length = 261

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 91/206 (44%), Positives = 135/206 (65%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++T   FT LS  P +L+M+T F R +IV S++R  +G  S PPN VII L+LF+T +VM
Sbjct: 58  IQTLLFFTALSFLPAILLMMTGFTRIVIVLSLMRQALGTQSAPPNQVIIGLSLFLTLFVM 117

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            PTLDR  +    P   N +T   AI++   P   FM   TR+ D +LF  +A      T
Sbjct: 118 GPTLDRVYQEAYVPYTTNAVTFEQAIEKAEAPMRDFMLKQTRQSDFALFARLAKLDAGVT 177

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
               ++    R+L+P+F+ SEL+ +F+IGF+I +PFL+IDM+V++I+M++GMMML P  +
Sbjct: 178 ----SETAPLRVLVPAFVTSELKTAFQIGFMIFIPFLVIDMVVSSILMSLGMMMLSPVLV 233

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           +LPFK++ FVL DGW+LL+ +L  SF
Sbjct: 234 ALPFKLMLFVLADGWNLLIGSLAASF 259


>gi|91776320|ref|YP_546076.1| flagellar biosynthesis protein FliP [Methylobacillus flagellatus
           KT]
 gi|91710307|gb|ABE50235.1| flagellar biosynthetic protein FliP [Methylobacillus flagellatus
           KT]
          Length = 250

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 97/214 (45%), Positives = 137/214 (64%), Gaps = 9/214 (4%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
            LSI T I     + T L+  P  L+M+T F R IIV S+LR  +G  S PPN V++ LA
Sbjct: 45  SLSIQTLI-----LLTSLTFLPAALLMMTGFTRIIIVLSLLRQALGTQSSPPNQVLVGLA 99

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           LF+TF+VM P  +R      QP    +IT   A+ R + P   FM   TRE DL+LF  M
Sbjct: 100 LFLTFFVMGPVFERIYTEAYQPFDEERITMQEAMVRGSIPLKEFMLKQTRESDLALFFKM 159

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           +    R   +   + +  R+L+P+F+ SEL+ +F+IGF I +PFLIIDM+VA+I+M+MGM
Sbjct: 160 S----RADAVATPEEVPLRVLVPAFVTSELKTAFQIGFAIFIPFLIIDMVVASILMSMGM 215

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MM+ P  ++LPFK++ FVL+DGW LL+ +L +SF
Sbjct: 216 MMVSPAIVALPFKLMLFVLVDGWQLLLGSLAQSF 249


>gi|77457776|ref|YP_347281.1| flagellar biosynthesis protein FliP [Pseudomonas fluorescens Pf0-1]
 gi|77381779|gb|ABA73292.1| flagellar biosynthesis protein [Pseudomonas fluorescens Pf0-1]
          Length = 252

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 90/201 (44%), Positives = 132/201 (65%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           I T LS  P  +I++T F R IIVFSILR  +G+   P N ++  +ALF+T ++M+P  D
Sbjct: 51  IMTALSFIPAAVILMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTLFIMAPVFD 110

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           R     +QP +  ++T   A+++   P   FM   TR  DL LF+ ++    + TDI   
Sbjct: 111 RVNNDALQPYLAEKLTAQQAVEKAQVPIKDFMLAQTRSSDLELFVRLS----KRTDIATP 166

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D     IL+P+F+ SEL+ +F+IGF+I +PFLIID++VA+++MAMGMMML P  ISLPFK
Sbjct: 167 DAAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK 226

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW+L++  L  SF
Sbjct: 227 IMLFVLVDGWALIIGTLASSF 247


>gi|85710189|ref|ZP_01041254.1| Flagellar transport protein FliP [Erythrobacter sp. NAP1]
 gi|85688899|gb|EAQ28903.1| Flagellar transport protein FliP [Erythrobacter sp. NAP1]
          Length = 243

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 90/201 (44%), Positives = 134/201 (66%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + ++L+I P +++M+T F R +IV SILR  +G+   PP  V++ L+LF++ +VM+PTLD
Sbjct: 46  VISLLTILPAIVLMMTSFLRILIVLSILRQALGLQGSPPTQVLVGLSLFLSLFVMAPTLD 105

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              E+ I+P     I    AI    E F  FM   TRE +L +F D+A            
Sbjct: 106 TVSELAIEPYSAGTIGADAAIASAGEAFHTFMLRQTREANLVMFADIAGIGA----FADA 161

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D I + IL+P+F+ SEL  +F+IGF++ LPFL+ID++VA+++M++GMMML PT ISLPFK
Sbjct: 162 DAIPFSILLPAFVTSELETAFQIGFMLFLPFLVIDLVVASVLMSLGMMMLSPTIISLPFK 221

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGWSLL+ +L  SF
Sbjct: 222 LLLFVLVDGWSLLMGSLAMSF 242


>gi|187926923|ref|YP_001893268.1| flagellar biosynthetic protein FliP [Ralstonia pickettii 12J]
 gi|241665252|ref|YP_002983611.1| flagellar biosynthesis protein FliP [Ralstonia pickettii 12D]
 gi|187728677|gb|ACD29841.1| flagellar biosynthetic protein FliP [Ralstonia pickettii 12J]
 gi|240867279|gb|ACS64939.1| flagellar biosynthetic protein FliP [Ralstonia pickettii 12D]
          Length = 249

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 95/210 (45%), Positives = 136/210 (64%), Gaps = 4/210 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           T  V+T    T L   P +++M++ F R IIV S+LR  +G  + PPN V+I LALF+TF
Sbjct: 43  TLPVQTLIFLTSLGFLPAIILMMSSFTRIIIVLSLLRHALGTQTTPPNQVLIGLALFLTF 102

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           +VMSP LD+       PL +N+IT   A+   A P   FM   TRE DL+LF+ M +   
Sbjct: 103 FVMSPVLDKVYTDAYVPLRDNKITVEQAMDTAATPLRQFMLKQTREPDLALFVKMGNMPA 162

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
               I   +    R LIP+F+ SEL+ +F+IGF I +PFL+ID++VA ++M+MGMMM+ P
Sbjct: 163 ----IASPEQTPMRALIPAFVTSELKSAFQIGFAIFIPFLVIDIVVAAVLMSMGMMMVTP 218

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +  SLPFK++ FVL+DGW LL+ +L +SF+
Sbjct: 219 SIFSLPFKIMLFVLVDGWHLLLGSLAQSFV 248


>gi|83815985|ref|YP_446686.1| flagellar biosynthesis protein FliP [Salinibacter ruber DSM 13855]
 gi|83757379|gb|ABC45492.1| flagellar biosynthetic protein FliP [Salinibacter ruber DSM 13855]
          Length = 279

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 88/194 (45%), Positives = 134/194 (69%), Gaps = 4/194 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP ++I++T F R ++VFSILR  +G+   PP  V+I L+LF++ ++M P L+   +  +
Sbjct: 87  APAIIILMTSFTRLVVVFSILRRALGLQRSPPRQVVIGLSLFLSLFIMQPVLETVHQDAL 146

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           +P ++N+IT+  A  R + P   FM  +TR+KDL LFMDM             D     +
Sbjct: 147 RPYLDNEITQQEAFDRASTPMKRFMLTHTRDKDLMLFMDMGEIES----FEGPDEAPLYV 202

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           ++P+F+ISELR +F+IGF+I LPFLI+D++VA+I+M+MGMMMLPP  ISLP K++ FVL 
Sbjct: 203 VVPAFVISELRIAFQIGFMIFLPFLIVDLVVASILMSMGMMMLPPVMISLPIKLLLFVLT 262

Query: 232 DGWSLLVENLVKSF 245
           DGW L+VE+L++ +
Sbjct: 263 DGWYLIVESLMQGY 276


>gi|323496545|ref|ZP_08101599.1| flagellar biosynthesis protein FliP [Vibrio sinaloensis DSM 21326]
 gi|323318389|gb|EGA71346.1| flagellar biosynthesis protein FliP [Vibrio sinaloensis DSM 21326]
          Length = 291

 Score =  182 bits (463), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 92/214 (42%), Positives = 141/214 (65%), Gaps = 8/214 (3%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D SI+  I+    + T+L   P ++I++T F R ++V SILR  MG+   P N VII +A
Sbjct: 84  DYSINLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 140

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           +F+TF++MSP L++  E  +QP +N QI+   A      P   FM   TR KDL  F+++
Sbjct: 141 IFLTFFIMSPVLNKINEAAVQPYINEQISAREAFDLAQAPMKDFMLKQTRVKDLETFVNI 200

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           + ++  N +      +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM
Sbjct: 201 SGATVNNPE-----DVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 255

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 256 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 289


>gi|330880585|gb|EGH14734.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 226

 Score =  182 bits (463), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 91/201 (45%), Positives = 133/201 (66%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           I T LS  P  ++++T F R IIVFSILR  +G+   P N ++  +ALF+T ++M+P  D
Sbjct: 27  IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFD 86

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           R  +  +QP +  +++   A+ +   P   FM   TR  DL LFM ++    + TDI   
Sbjct: 87  RVNQDALQPYLAEKLSAQDAVAKAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTP 142

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D     IL+P+F+ISEL+ +F+IGF+I +PFLIID++VA+++MAMGMMML P  ISLPFK
Sbjct: 143 DAAPLTILVPAFVISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK 202

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW+L+V  L  SF
Sbjct: 203 IMLFVLVDGWALIVGTLAGSF 223


>gi|332161332|ref|YP_004297909.1| flagellar biosynthesis protein FliP [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318605253|emb|CBY26751.1| flagellar biosynthesis protein FliP [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325665562|gb|ADZ42206.1| flagellar biosynthesis protein FliP [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 250

 Score =  182 bits (463), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 93/227 (40%), Positives = 146/227 (64%), Gaps = 6/227 (2%)

Query: 21  SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           + L  +++ P      +W   V+T    T LS  P  L+M+T F R IIV  +LR  +G 
Sbjct: 26  AQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLLRNALGT 85

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
            S PPN V++ LALF+TF++MSP  D+  +    P   ++I+   A+ + ++P   FM  
Sbjct: 86  PSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAMDKGSQPLREFMLR 145

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
            TRE DL+L+  +A+       +   + +  RIL+P+++ SEL+ +F+IGF + +PFLII
Sbjct: 146 QTRESDLALYARLANLPP----LEGPEVVPLRILLPAYVTSELKTAFQIGFTVFIPFLII 201

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           D++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 202 DLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 248


>gi|294508622|ref|YP_003572681.1| flagellar biosynthetic protein FliP [Salinibacter ruber M8]
 gi|294344951|emb|CBH25729.1| flagellar biosynthetic protein FliP [Salinibacter ruber M8]
          Length = 284

 Score =  182 bits (463), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 88/194 (45%), Positives = 134/194 (69%), Gaps = 4/194 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP ++I++T F R ++VFSILR  +G+   PP  V+I L+LF++ ++M P L+   +  +
Sbjct: 92  APAIIILMTSFTRLVVVFSILRRALGLQRSPPRQVVIGLSLFLSLFIMQPVLETVHQDAL 151

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           +P ++N+IT+  A  R + P   FM  +TR+KDL LFMDM             D     +
Sbjct: 152 RPYLDNEITQQEAFDRASTPMKRFMLTHTRDKDLMLFMDMGEIE----SFEGPDEAPLYV 207

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           ++P+F+ISELR +F+IGF+I LPFLI+D++VA+I+M+MGMMMLPP  ISLP K++ FVL 
Sbjct: 208 VVPAFVISELRIAFQIGFMIFLPFLIVDLVVASILMSMGMMMLPPVMISLPIKLLLFVLT 267

Query: 232 DGWSLLVENLVKSF 245
           DGW L+VE+L++ +
Sbjct: 268 DGWYLIVESLMQGY 281


>gi|90406809|ref|ZP_01215001.1| flagellar biosynthesis protein [Psychromonas sp. CNPT3]
 gi|90312046|gb|EAS40139.1| flagellar biosynthesis protein [Psychromonas sp. CNPT3]
          Length = 249

 Score =  182 bits (463), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 88/206 (42%), Positives = 137/206 (66%), Gaps = 5/206 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++     T LS  P +L+++T F R ++V SILR  +G+   P N VI  +ALF+TF++M
Sbjct: 46  LQVLAFMTALSFLPAMLVLMTSFTRIVVVMSILRQALGLQQTPSNQVINGIALFLTFFIM 105

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +P  D+  E  +QP +N  +    AI++  +P   FM   TR KDL  F+++A     N 
Sbjct: 106 TPVFDKINEEALQPYLNEDMNIVQAIEQGKKPLMAFMLAQTRLKDLETFLEIA-----NV 160

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +   + + + +LIP+F+ SEL+ +F+IGF+I +PFLIID++VA+I+MAMGMMML P  +
Sbjct: 161 QVDTPEEVPFTVLIPAFVTSELKTAFQIGFMIFIPFLIIDLVVASILMAMGMMMLSPMIV 220

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW+L++ +L  SF
Sbjct: 221 SLPFKLMLFVLVDGWNLIMGSLANSF 246


>gi|78777215|ref|YP_393530.1| flagellar biosynthesis protein FliP [Sulfurimonas denitrificans DSM
           1251]
 gi|78497755|gb|ABB44295.1| Flagellar transport protein FliP [Sulfurimonas denitrificans DSM
           1251]
          Length = 246

 Score =  182 bits (463), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 91/193 (47%), Positives = 133/193 (68%), Gaps = 4/193 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +++++T F RF+IVF  LR  +G   VPP  +++ L + +TF+VM P   ++ E GI
Sbjct: 56  APSMVLVMTTFTRFVIVFGFLRQALGTQQVPPTQLLVMLGMILTFFVMEPVGIKAYEDGI 115

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           +P +  +I    A  + A PF  FM  NTREKDL+LF  +     +  + T    +   I
Sbjct: 116 KPYIEEKIGYEEAFDKTALPFKNFMIRNTREKDLALFFRI----RKMQNPTTIAEVPLSI 171

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           +IP+F+ISEL+ +FEIGFL+ LPFL+IDM+VA+I+M+MGMMMLPP  I+LPFK++ F+LI
Sbjct: 172 IIPAFVISELKTAFEIGFLLFLPFLVIDMVVASILMSMGMMMLPPVMIALPFKILIFILI 231

Query: 232 DGWSLLVENLVKS 244
           DGW+LL+ NL+ S
Sbjct: 232 DGWNLLIGNLIAS 244


>gi|224826623|ref|ZP_03699724.1| flagellar biosynthetic protein FliP [Lutiella nitroferrum 2002]
 gi|224601224|gb|EEG07406.1| flagellar biosynthetic protein FliP [Lutiella nitroferrum 2002]
          Length = 248

 Score =  182 bits (463), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 93/199 (46%), Positives = 134/199 (67%), Gaps = 4/199 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T LS  P LL+M+T F R IIV S+LR  MG    PPN V++ LALF+T +VM PT D+ 
Sbjct: 51  TALSFIPALLLMMTSFTRIIIVLSLLRQAMGTMQAPPNQVLVGLALFLTLFVMGPTFDQV 110

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
                 P   ++I     ++  ++P   FM   TREKDL+ F++++ S    T       
Sbjct: 111 YSKAWVPFSEDKIGFAQMLEEGSKPMREFMLKQTREKDLAFFIEVSQSPAPPTP----AE 166

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
           +  + LIP+F+ISEL+ +F+IGF++ +PFLIID++VA+I+MAMGMMM+ P  ISLPFK++
Sbjct: 167 VSMKTLIPAFVISELKTAFQIGFMVFIPFLIIDLVVASILMAMGMMMVSPVIISLPFKLM 226

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FVL+DGW+LL+ +LV+SF
Sbjct: 227 LFVLVDGWTLLMGSLVRSF 245


>gi|17548596|ref|NP_521936.1| flagellar biosynthesis protein FliP [Ralstonia solanacearum
           GMI1000]
 gi|17430844|emb|CAD17526.1| probable flagellar biosynthetic flip transmembrane protein
           [Ralstonia solanacearum GMI1000]
          Length = 249

 Score =  182 bits (463), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 94/206 (45%), Positives = 134/206 (65%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T    T L   P +L+M++ F R IIV S+LR  +G  + PPN V+I LALF+TF+VM
Sbjct: 46  VQTLVFLTSLGFLPAILLMMSSFTRIIIVLSLLRHALGTQTTPPNQVLIGLALFLTFFVM 105

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP LD+       PL +++I+   A+   A P   FM   TRE DL+LF  M +      
Sbjct: 106 SPVLDKVYTDAYLPLRDSKISVEQALDTAATPLRQFMLKQTREPDLALFAKMGNLP---- 161

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            I   D +  R LIP+F+ SEL+ +F+IGF I +PFL+ID++VA ++M+MGMMM+ P+  
Sbjct: 162 PIASPDQVPMRALIPAFVTSELKTAFQIGFAIFIPFLVIDIVVAAVLMSMGMMMVTPSIF 221

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 222 SLPFKIMLFVLVDGWHLLLGSLAQSF 247


>gi|260574384|ref|ZP_05842388.1| flagellar biosynthetic protein FliP [Rhodobacter sp. SW2]
 gi|259023280|gb|EEW26572.1| flagellar biosynthetic protein FliP [Rhodobacter sp. SW2]
          Length = 242

 Score =  182 bits (463), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 94/219 (42%), Positives = 142/219 (64%), Gaps = 5/219 (2%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
           +N+    S+S   ++   + T+LS+ P L +M+TCFP  + V SILR  +G+   PPN++
Sbjct: 28  LNLGDQGSLSARSIQLLVLITVLSLVPGLAVMITCFPFIVTVLSILRQAIGLQQSPPNML 87

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           I+SLALF+T+YVM P    +   G++PL   +    TAI  +  PF VFM   +   D  
Sbjct: 88  IVSLALFLTWYVMDPVFTEAWTTGMEPLTRGETDLQTAIPAILAPFRVFM---SARMDAD 144

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
            F  M   + R  + +        +++PSF++SE++R+FEIGFLI LPFLIID++VA ++
Sbjct: 145 TFAAM--QALRPGESSSVAQAPLSLMVPSFLLSEIQRAFEIGFLIFLPFLIIDLVVAAVL 202

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+MGMMM+PP+ +SLPFK+ FFV+ DGWSL+   LV+S+
Sbjct: 203 MSMGMMMVPPSIVSLPFKLAFFVVADGWSLVSGALVRSY 241


>gi|238785487|ref|ZP_04629470.1| Flagellar biosynthetic protein fliP [Yersinia bercovieri ATCC
           43970]
 gi|238713589|gb|EEQ05618.1| Flagellar biosynthetic protein fliP [Yersinia bercovieri ATCC
           43970]
          Length = 249

 Score =  182 bits (463), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 96/231 (41%), Positives = 149/231 (64%), Gaps = 8/231 (3%)

Query: 17  VFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74
           VFA+  L  +++ P      +W   V+T    T LS  P  L+M+T F R IIV  +LR 
Sbjct: 23  VFAQ--LPGLISQPLANGGQSWSLPVQTLVFITALSFLPAALLMMTSFTRIIIVLGLLRN 80

Query: 75  GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134
            +G  S PPN V++ LALF+TF++MSP  D+  +    P   ++I+   A+ + ++P   
Sbjct: 81  ALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAMDKGSQPLRE 140

Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
           FM   TRE DL+L+  +A+       +   + +  RIL+P+++ SEL+ +F+IGF + +P
Sbjct: 141 FMLRQTRESDLALYARLANLP----PLEGPEVVPMRILLPAYVTSELKTAFQIGFTVFIP 196

Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           FLIID++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 197 FLIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 247


>gi|291532049|emb|CBK97634.1| flagellar biosynthetic protein FliP [Eubacterium siraeum 70/3]
          Length = 307

 Score =  182 bits (463), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 90/208 (43%), Positives = 129/208 (62%), Gaps = 9/208 (4%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T+LS+AP LL+M+T F R II FS LRT M     PPN+V+  L+LF+T ++M P     
Sbjct: 98  TVLSLAPSLLVMMTSFARIIICFSFLRTAMQTQPTPPNMVLTGLSLFLTIFIMWPVFSEI 157

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
            E   QP    ++T   AI    +P   FM   T   D+  F+D+   S  +      D+
Sbjct: 158 NETAYQPYAAGEMTMEQAIDAAGKPLKTFMLKQTTNDDMKFFLDLKGQSMSDVTGGATDN 217

Query: 167 IE---------YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
           I          +  +IP+F++SEL+R+F++GFLI +PFL+ID++V++ +MAMGMMMLPP 
Sbjct: 218 ITLENYSEKLGFETVIPAFIVSELKRAFQMGFLIFIPFLVIDLVVSSTLMAMGMMMLPPA 277

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
            ISLPFK+I FVL+DGW L+V  +V S+
Sbjct: 278 MISLPFKIILFVLVDGWQLMVGTIVNSY 305


>gi|269965693|ref|ZP_06179806.1| Flagellar biosynthetic protein fliP [Vibrio alginolyticus 40B]
 gi|269829761|gb|EEZ83997.1| Flagellar biosynthetic protein fliP [Vibrio alginolyticus 40B]
          Length = 289

 Score =  182 bits (463), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 92/214 (42%), Positives = 137/214 (64%), Gaps = 8/214 (3%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D S++  I+    + T+L   P ++I++T F R ++V SILR  MG+   P N VII +A
Sbjct: 82  DYSVTLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 138

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           LF+TF+VMSP L+   +  +QP +N Q+T   A      P   FM   TR KDL  F+ M
Sbjct: 139 LFLTFFVMSPVLNEINDKAVQPYLNEQVTAREAFDAAQAPMKAFMLKQTRIKDLETFVTM 198

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           +        +   + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM
Sbjct: 199 SGE-----QVEDPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 253

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 254 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287


>gi|87119473|ref|ZP_01075370.1| Flagellar transport protein FliP [Marinomonas sp. MED121]
 gi|86164949|gb|EAQ66217.1| Flagellar transport protein FliP [Marinomonas sp. MED121]
          Length = 249

 Score =  182 bits (463), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 88/214 (41%), Positives = 144/214 (67%), Gaps = 6/214 (2%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D S+S  I+    I T L++ P  L M+T F R ++V +ILR  +G+   P N +++ +A
Sbjct: 40  DYSVSLQILF---IMTALTLLPAALTMMTAFTRIVVVLAILRQAIGLQQTPSNQIMVGMA 96

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           LF+T ++M+PTLD+   + +QP +  +IT   AI++ + P   FM   TRE D++LF+ +
Sbjct: 97  LFLTLFIMTPTLDKINAVALQPYLEEEITSIQAIEKASVPIRDFMLAQTRESDIALFVKL 156

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           A    +   I   + + + IL+P+F+ SEL+ +F+IGF+I +PFL++DM+VA+++MAMGM
Sbjct: 157 AG---KEGQIESLETLPFTILMPAFVASELKTAFQIGFMIFIPFLVLDMVVASVLMAMGM 213

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MML P  ISLPFK++ FV++DGW++++  L  SF
Sbjct: 214 MMLSPIIISLPFKIMLFVMVDGWAMIMGTLAASF 247


>gi|85711032|ref|ZP_01042092.1| flagellar biosynthesis protein [Idiomarina baltica OS145]
 gi|85694945|gb|EAQ32883.1| flagellar biosynthesis protein [Idiomarina baltica OS145]
          Length = 249

 Score =  182 bits (462), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 97/243 (39%), Positives = 145/243 (59%), Gaps = 6/243 (2%)

Query: 5   CFFALFLVTPELVFAKSSLH--DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCF 62
           CF  L L+ P++  A   +    V   P      +  ++   I T L+  P ++IM+T F
Sbjct: 9   CFVLLALLLPDVANAMQDISAVTVKTNPDGSEEYSVTLQILAIMTALTFIPAMVIMMTSF 68

Query: 63  PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122
            R I+V +ILR  +G+   P N V+I + LF+TF++MSP L    +  +QP +N ++T  
Sbjct: 69  TRIIVVLAILRQAIGLQQSPSNQVLIGITLFLTFFIMSPVLTEINDKALQPYLNEEVTSM 128

Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182
            A+ R   P   FM   TR  D+  F D+A      T+I   +     ILIPSF+ SEL+
Sbjct: 129 EAVDRAKAPLKAFMLAQTRVTDIQTFADIAG----ETNIQSPEDTPMSILIPSFITSELK 184

Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
            +F+IGF++ +PFLIID++VA+++MAMGMMML P  +SLPFK++ FVL+DGW+L +  L 
Sbjct: 185 TAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLTMSTLA 244

Query: 243 KSF 245
            SF
Sbjct: 245 GSF 247


>gi|238751771|ref|ZP_04613259.1| Flagellar biosynthetic protein fliP [Yersinia rohdei ATCC 43380]
 gi|238710042|gb|EEQ02272.1| Flagellar biosynthetic protein fliP [Yersinia rohdei ATCC 43380]
          Length = 243

 Score =  182 bits (462), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 93/227 (40%), Positives = 146/227 (64%), Gaps = 6/227 (2%)

Query: 21  SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           + L  +++ P      +W   V+T    T LS  P  L+M+T F R IIV  +LR  +G 
Sbjct: 19  AQLPGIISQPLANGGQSWSLPVQTLVFITALSFLPAALLMMTSFTRIIIVLGLLRNALGT 78

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
            S PPN V++ LALF+TF++MSP  D+  +    P   ++I+   A+ + ++P   FM  
Sbjct: 79  PSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAMDKGSQPLREFMLR 138

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
            TRE DL+L+  +A+       +   + +  RIL+P+++ SEL+ +F+IGF + +PFLII
Sbjct: 139 QTRETDLALYARLANLPP----LEGPEVVPMRILLPAYVTSELKTAFQIGFTVFIPFLII 194

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           D++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 195 DLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 241


>gi|323491455|ref|ZP_08096639.1| flagellar biosynthesis protein FliP [Vibrio brasiliensis LMG 20546]
 gi|323314324|gb|EGA67404.1| flagellar biosynthesis protein FliP [Vibrio brasiliensis LMG 20546]
          Length = 291

 Score =  182 bits (462), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 94/214 (43%), Positives = 140/214 (65%), Gaps = 8/214 (3%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D SI+  I+    + T+L   P ++I++T F R ++V SILR  MG+   P N VII +A
Sbjct: 84  DYSINLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIA 140

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           +F+TF++MSP L +  +  IQP +N QIT   A      P   FM   TR KDL  F+++
Sbjct: 141 IFLTFFIMSPVLSKINDDAIQPYINEQITARQAFDLAQTPMKDFMLKQTRVKDLETFVNI 200

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           + S+      T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGM
Sbjct: 201 SGSTA-----TAPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGM 255

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 256 MMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 289


>gi|323700135|ref|ZP_08112047.1| flagellar biosynthetic protein FliP [Desulfovibrio sp. ND132]
 gi|323460067|gb|EGB15932.1| flagellar biosynthetic protein FliP [Desulfovibrio desulfuricans
           ND132]
          Length = 252

 Score =  182 bits (462), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 96/201 (47%), Positives = 132/201 (65%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + TILSIAP +L+ +T F R IIVF  +R  MG   +PPN ++ +LA+FMT  +M P   
Sbjct: 55  LLTILSIAPAILLTMTSFTRIIIVFHFIRQAMGTQQMPPNQILAALAIFMTMVIMYPVGK 114

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              E  +QP MN  I  T A+ R   P   FM  +TREKDLS+F    +S  +       
Sbjct: 115 TINETALQPYMNETINFTEALTRAQVPIRQFMFKHTREKDLSIF----YSITKEPRPENK 170

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           + +   +L+ ++ ISEL+  F IGFLI +PFLI+DM+VA+I++AMGMMMLPP  ISLPFK
Sbjct: 171 EEVPTIMLVAAYTISELKTGFTIGFLIYIPFLILDMVVASILLAMGMMMLPPVMISLPFK 230

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ F+LIDGW+LLV +LV +F
Sbjct: 231 ILLFILIDGWNLLVGSLVNTF 251


>gi|134095087|ref|YP_001100162.1| flagellar biosynthesis protein FliP [Herminiimonas arsenicoxydans]
 gi|133738990|emb|CAL62038.1| Flagellar biosynthetic protein FliP Precursor [Herminiimonas
           arsenicoxydans]
          Length = 252

 Score =  182 bits (462), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 89/193 (46%), Positives = 130/193 (67%), Gaps = 4/193 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +L+M+T F R IIV S+LR  +G  S PPN VII L+LF+T +VMSP LD+      Q
Sbjct: 63  PAVLLMMTSFTRIIIVLSLLRQALGTQSSPPNQVIIGLSLFLTLFVMSPVLDKIYVDAYQ 122

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P   N+I    A+ +   P   FM   TRE DL+L++ M+    +  ++   + I  RIL
Sbjct: 123 PFSANKIQMGEALDKAVAPLKTFMIKQTRESDLALYVKMS----KGPELQGPEDIPLRIL 178

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           +P+F+ SEL+ +F+I F I +PFLIIDM+VA+++M+MGMMM+ P  ++LPFK++ FVL+D
Sbjct: 179 VPAFITSELKTAFQISFAIFIPFLIIDMVVASVLMSMGMMMVSPAIVALPFKLMLFVLVD 238

Query: 233 GWSLLVENLVKSF 245
           GW LL+ +L +SF
Sbjct: 239 GWQLLIGSLAQSF 251


>gi|299534771|ref|ZP_07048101.1| flagellar biosynthesis protein FliP [Lysinibacillus fusiformis ZC1]
 gi|298729859|gb|EFI70404.1| flagellar biosynthesis protein FliP [Lysinibacillus fusiformis ZC1]
          Length = 221

 Score =  182 bits (462), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 90/195 (46%), Positives = 135/195 (69%), Gaps = 6/195 (3%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +LI++T F R +IV S +RT +    +PPN VII LALF+TF++M+PT     +  +
Sbjct: 32  APSILILMTSFARIVIVLSFVRTALATQQMPPNQVIIGLALFLTFFIMAPTFQEVNKEAL 91

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYR 170
           QPL   +I    A  R + PF  FM  +TR+KDL LF+     ++   D   + + I   
Sbjct: 92  QPLFAEEIGIEEAYDRASVPFKEFMSKHTRQKDLDLFL-----TYNQADKPASVEEIPLT 146

Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230
           +L+P+F +SE++ +F+IGF+I +PFL+IDMIVA+ +M+MGMMMLPP  ISLPFK++ FVL
Sbjct: 147 MLVPAFALSEIKTAFQIGFMIFIPFLVIDMIVASTLMSMGMMMLPPVMISLPFKILLFVL 206

Query: 231 IDGWSLLVENLVKSF 245
           +DGW L++++L++SF
Sbjct: 207 VDGWYLVMKSLLQSF 221


>gi|119385379|ref|YP_916435.1| flagellar biosynthesis protein FliP [Paracoccus denitrificans
           PD1222]
 gi|119375146|gb|ABL70739.1| flagellar biosynthetic protein FliP [Paracoccus denitrificans
           PD1222]
          Length = 241

 Score =  182 bits (462), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 89/203 (43%), Positives = 136/203 (66%), Gaps = 7/203 (3%)

Query: 43  FGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT 102
             + T LS+AP + IMVTCFP  + V SILR  +G+   PPN++I+SLA+F+T++VM+P 
Sbjct: 45  LAVMTALSLAPGIAIMVTCFPFIVTVLSILRQSLGLQQSPPNMLIVSLAMFLTWFVMNPV 104

Query: 103 LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT 162
           L  + ++   PL + +IT   A +R   PF  FM + T  + L+   ++A       D  
Sbjct: 105 LTEAWDVAGAPLRDGRITVEQAFERGIVPFRGFMEHRTDPEMLATLAEIAPDPEAAPD-- 162

Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
                   +LIP+FMISE++R+FEIGFL+ LPFLIID++V+ ++M+MGMMM+PP  ++LP
Sbjct: 163 -----RLSVLIPAFMISEIQRAFEIGFLVALPFLIIDLVVSAVLMSMGMMMVPPVVVALP 217

Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245
           FK+ FFV++DGW ++   LV+S+
Sbjct: 218 FKLAFFVVVDGWGMIAAALVRSY 240


>gi|86146126|ref|ZP_01064452.1| flagellar biosynthesis protein [Vibrio sp. MED222]
 gi|218708833|ref|YP_002416454.1| flagellar biosynthesis protein FliP [Vibrio splendidus LGP32]
 gi|85836073|gb|EAQ54205.1| flagellar biosynthesis protein [Vibrio sp. MED222]
 gi|218321852|emb|CAV17828.1| Flagellar biosynthetic protein fliP [Vibrio splendidus LGP32]
          Length = 309

 Score =  182 bits (462), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 92/218 (42%), Positives = 141/218 (64%), Gaps = 8/218 (3%)

Query: 28  NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87
           N   D SI+  I+    + T+L   P ++I++T F R ++V SILR  MG+   P N VI
Sbjct: 98  NGGEDYSINLQIL---ALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVI 154

Query: 88  ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147
           I +A+F+TF++MSP + +  E  +QP +N QI+   A      P   FM   TR KDL  
Sbjct: 155 IGIAIFLTFFIMSPVISQVNEQAVQPYLNEQISARQAFDVAQGPIKSFMLKQTRIKDLET 214

Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
           F++++ +      +T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++M
Sbjct: 215 FVEISGA-----QVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLM 269

Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           AMGMMML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 270 AMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 307


>gi|332187877|ref|ZP_08389610.1| flagellar biosynthetic protein FliP [Sphingomonas sp. S17]
 gi|332012038|gb|EGI54110.1| flagellar biosynthetic protein FliP [Sphingomonas sp. S17]
          Length = 293

 Score =  182 bits (462), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 89/201 (44%), Positives = 136/201 (67%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           I  +L+I P +++M+T F R +IV +ILR  +G+   PPN V+I LA+F++ ++M+PT+ 
Sbjct: 95  IMGLLTILPGIILMMTSFTRIVIVLAILRQALGLQQTPPNQVLIGLAMFLSLFIMAPTIS 154

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +     IQP    ++  T  I+    P   FM   TR KD+++F  MA S    +    N
Sbjct: 155 QMNANAIQPYAEGRLPGTEMIKAAGAPLHAFMAKQTRVKDVTMFAQMAKSGPYAS---PN 211

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D I Y +L+P+F+ SEL+ +F+IGFLI LPF++ID++VAT++MA+GMMML P+ ISLPFK
Sbjct: 212 D-IPYAVLLPAFVTSELKTAFQIGFLIFLPFIVIDLVVATVLMALGMMMLSPSIISLPFK 270

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW+L + +L  SF
Sbjct: 271 LLLFVLVDGWALTMGSLANSF 291


>gi|291613058|ref|YP_003523215.1| flagellar biosynthetic protein FliP [Sideroxydans lithotrophicus
           ES-1]
 gi|291583170|gb|ADE10828.1| flagellar biosynthetic protein FliP [Sideroxydans lithotrophicus
           ES-1]
          Length = 248

 Score =  182 bits (462), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 96/242 (39%), Positives = 150/242 (61%), Gaps = 7/242 (2%)

Query: 7   FALFLVTPELVFAKSSLHDVMN---IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
           FAL        FA  S    +N    P      T  ++T  + + L+  P +L+M+T F 
Sbjct: 9   FALLFAMSTSAFAAESGLLALNSTPTPGGGQTYTLSLQTLILISSLTFLPAILLMMTGFT 68

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
           R IIV  +LR+ +G  S PPN V++ LALF+TF+VM+P  D+       P   N+I+   
Sbjct: 69  RIIIVLGLLRSAIGTPSSPPNQVLVGLALFLTFFVMAPVFDKIYSDAYLPYSENKISLQQ 128

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
           A ++ + P   FM   TRE DL+LF+ +++S      +   + +  +IL+P+++ SEL+ 
Sbjct: 129 AYEKGSAPLKAFMLRQTRETDLALFVRISNSE----PLQSAEDVPMKILVPAYVTSELKT 184

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
           +F+IGF++ +PFLIIDM+VA+++M+MGMMM+ P   SLPFK++ FVL DGW+LL+ +LV+
Sbjct: 185 AFQIGFVVFIPFLIIDMVVASVLMSMGMMMVSPAVFSLPFKIMLFVLADGWNLLIGSLVQ 244

Query: 244 SF 245
           SF
Sbjct: 245 SF 246


>gi|114777577|ref|ZP_01452558.1| flagellar biosynthetic protein fliP [Mariprofundus ferrooxydans
           PV-1]
 gi|114552048|gb|EAU54565.1| flagellar biosynthetic protein fliP [Mariprofundus ferrooxydans
           PV-1]
          Length = 249

 Score =  182 bits (461), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 92/206 (44%), Positives = 136/206 (66%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   + TIL++AP +L+M+T F R +IVF+ LR  +G    PPN ++I L+LF+T ++M
Sbjct: 46  LKILAMLTILTLAPSILVMMTSFTRILIVFAFLRQALGTQQAPPNQILIGLSLFLTLFIM 105

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P   +     + P +N +I ++ A +R   P   FM   TRE DL LF++ A       
Sbjct: 106 MPVWQKIDTTALTPYLNEEINQSVAFERGIAPLRDFMLKQTREDDLLLFLNAAKLKK--- 162

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
              K + +   +LIPSF+ISELR +FEIGFLI +PF+++D+IVA+++M+MGMMMLPP  I
Sbjct: 163 -PAKAEDMPMHVLIPSFVISELRTAFEIGFLIYIPFIVLDLIVASVLMSMGMMMLPPVMI 221

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLP K+I FVL+DGW L+  NL+ SF
Sbjct: 222 SLPLKIILFVLVDGWHLITANLIASF 247


>gi|300693349|ref|YP_003749322.1| flip: flagellar biosynthesis protein. flip/mopc/spap family
           [Ralstonia solanacearum PSI07]
 gi|299075386|emb|CBJ34681.1| fliP: flagellar biosynthesis protein. fliP/mopC/spaP family
           [Ralstonia solanacearum PSI07]
          Length = 249

 Score =  182 bits (461), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 94/206 (45%), Positives = 134/206 (65%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T    T L   P +L+M++ F R IIV S+LR  +G  + PPN V+I LALF+TF+VM
Sbjct: 46  VQTLVFLTSLGFLPAILLMMSSFTRIIIVLSLLRHALGTQTTPPNQVLIGLALFLTFFVM 105

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP LD+       PL +++I+   A+   A P   FM   TRE DL+LF  M +      
Sbjct: 106 SPVLDKVYTDAYVPLRDSKISVEQALDTAATPMRQFMLKQTREPDLALFAKMGNLP---- 161

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            I   D +  R LIP+F+ SEL+ +F+IGF I +PFL+ID++VA ++M+MGMMM+ P+  
Sbjct: 162 PIASPDQVPMRALIPAFVTSELKTAFQIGFAIFIPFLVIDIVVAAVLMSMGMMMVTPSIF 221

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 222 SLPFKIMLFVLVDGWHLLLGSLAQSF 247


>gi|163789635|ref|ZP_02184073.1| flagellar biosynthesis protein P [Carnobacterium sp. AT7]
 gi|159875167|gb|EDP69233.1| flagellar biosynthesis protein P [Carnobacterium sp. AT7]
          Length = 254

 Score =  182 bits (461), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 101/248 (40%), Positives = 159/248 (64%), Gaps = 14/248 (5%)

Query: 7   FALFLVT----PELVFAKSSLHDVMNIPADL-----SISTWIVRTFGIFTILSIAPILLI 57
           F+LFL +    P+ V + + L D ++   DL       ++ +V+ F + T LS+AP  L+
Sbjct: 11  FSLFLTSFVLFPQ-VASAAELTDGLDGITDLFGKQSGGTSEVVQLFLLTTALSLAPTFLV 69

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           + TCF R I+V S +R+ +G    PPNLV++ +ALF++ ++M P     ++  I P +N 
Sbjct: 70  LTTCFTRIIVVLSFVRSSLGTQQNPPNLVLMGIALFLSLFIMQPVYTDVMDEAITPYINE 129

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
           +I+   A +    P   FM   TR++D+ LF+D++ +  +  D+  ND +   + IP+F+
Sbjct: 130 EISGIEAFELAELPIKEFMYKQTRDEDIQLFLDISKT-EKPADV--ND-LPLTVAIPAFI 185

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
           ISELR +F IGFLI +PFL+ID++VA+I+M+MGM ML P  ISLPFK++ FVL+DGW L+
Sbjct: 186 ISELRTAFTIGFLIFIPFLVIDIVVASILMSMGMFMLSPVMISLPFKLLLFVLVDGWYLV 245

Query: 238 VENLVKSF 245
           VE+LV  F
Sbjct: 246 VESLVTGF 253


>gi|225159018|ref|ZP_03725328.1| Triacylglycerol lipase [Opitutaceae bacterium TAV2]
 gi|224802397|gb|EEG20659.1| Triacylglycerol lipase [Opitutaceae bacterium TAV2]
          Length = 297

 Score =  182 bits (461), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 85/216 (39%), Positives = 147/216 (68%), Gaps = 8/216 (3%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P ++S+   IV    + T+L++AP L++++T F R +IV  ++RT +G+ + P N ++I 
Sbjct: 88  PGEISVGLQIVV---VMTLLTVAPSLILLMTSFTRLVIVLGLVRTALGVPNAPANQIVIG 144

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           L+LF+T ++M P + R+ +  +QP M  ++    A+ + AEP   FM   TR +DL  F+
Sbjct: 145 LSLFLTIFIMGPVIQRANQEALQPYMAGEMRSADALAKAAEPVKEFMLKQTRTRDLEFFL 204

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
            +          T+   +  R++IP+F+ISEL+ +F++GFL+ LPFL+ID++V++ +M++
Sbjct: 205 QLGRFPP-----TRVQDLPLRVVIPAFVISELQTAFQMGFLLFLPFLVIDLLVSSTLMSL 259

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMM+PP  +SLPFK++ FVL+DGW L+V++LV+SF
Sbjct: 260 GMMMMPPAIVSLPFKLLLFVLVDGWHLVVKSLVESF 295


>gi|167037653|ref|YP_001665231.1| flagellar biosynthesis protein FliP [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116068|ref|YP_004186227.1| flagellar biosynthetic protein FliP [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166856487|gb|ABY94895.1| flagellar biosynthetic protein FliP [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929159|gb|ADV79844.1| flagellar biosynthetic protein FliP [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 221

 Score =  182 bits (461), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 90/194 (46%), Positives = 132/194 (68%), Gaps = 5/194 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +LIM+T F R +IV S LR  +G+  +PPN V+I LALF+T ++M+P         I
Sbjct: 32  APSILIMMTSFTRIVIVLSFLRNALGLQQMPPNQVLIGLALFLTLFIMAPIGQDINNNAI 91

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           +P    +IT+  A Q   +P   FM   TR+ DL+LF+ +A     N +      +  R+
Sbjct: 92  KPYTEGKITQEEAYQNAIKPLKNFMLKQTRQSDLNLFVSLAKIKVNNAE-----DLPMRV 146

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           +IPSF+ISEL+ +FEIGF+I +PFLIID++VA+++M+MGM MLPP  ISLPFKV+ F+L+
Sbjct: 147 VIPSFIISELKTAFEIGFIIYIPFLIIDIVVASVLMSMGMFMLPPVLISLPFKVLLFILV 206

Query: 232 DGWSLLVENLVKSF 245
           DGW+L+V++L+  F
Sbjct: 207 DGWNLVVKSLILGF 220


>gi|152979946|ref|YP_001353121.1| flagellar biosynthesis protein FliP [Janthinobacterium sp.
           Marseille]
 gi|151280023|gb|ABR88433.1| Flip component of flagellar biosynthesis pathway [Janthinobacterium
           sp. Marseille]
          Length = 252

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 88/193 (45%), Positives = 130/193 (67%), Gaps = 4/193 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +L+M+T F R IIV S+LR  +G  S PPN VII L+LF+T +VMSP LD+      Q
Sbjct: 63  PAVLLMMTSFTRIIIVLSLLRQALGTQSSPPNQVIIGLSLFLTLFVMSPVLDKIYVDAYQ 122

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P   N+I    A+ +   P   FM   TRE DL+L++ ++    +  ++   + I  RIL
Sbjct: 123 PFSQNKIQMQEALDKAVAPLKTFMIKQTRESDLALYVKLS----KGPELQGPEDIPLRIL 178

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           +P+F+ SEL+ +F+I F I +PFLIIDM+VA+++M+MGMMM+ P  ++LPFK++ FVL+D
Sbjct: 179 VPAFVTSELKTAFQISFAIFIPFLIIDMVVASVLMSMGMMMVSPAIVALPFKLMLFVLVD 238

Query: 233 GWSLLVENLVKSF 245
           GW LL+ +L +SF
Sbjct: 239 GWQLLIGSLAQSF 251


>gi|160876167|ref|YP_001555483.1| flagellar biosynthesis protein FliP [Shewanella baltica OS195]
 gi|217972626|ref|YP_002357377.1| flagellar biosynthesis protein FliP [Shewanella baltica OS223]
 gi|160861689|gb|ABX50223.1| flagellar biosynthetic protein FliP [Shewanella baltica OS195]
 gi|217497761|gb|ACK45954.1| flagellar biosynthetic protein FliP [Shewanella baltica OS223]
 gi|315268363|gb|ADT95216.1| flagellar biosynthetic protein FliP [Shewanella baltica OS678]
          Length = 248

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 90/201 (44%), Positives = 135/201 (67%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T LS  P +LIM+T F R IIV SILR  +G+   P N V+I ++LFMTF++M+P  D
Sbjct: 51  LMTSLSFLPAMLIMLTSFTRIIIVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFD 110

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           R  + G++P +  Q+T   A ++  EP   FM    R  DL  F+++  S ++N  I   
Sbjct: 111 RIYDEGVKPYIEEQLTLQQAFEKGKEPLKGFMLGQVRTTDLKTFIEI--SGYKN--IKSP 166

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           +     +LIP+F+ SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P  +SLPFK
Sbjct: 167 EEAPMSVLIPAFITSELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFK 226

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGWSL++  L  SF
Sbjct: 227 IMLFVLVDGWSLVLGTLANSF 247


>gi|325981181|ref|YP_004293583.1| flagellar biosynthetic protein FliP [Nitrosomonas sp. AL212]
 gi|325530700|gb|ADZ25421.1| flagellar biosynthetic protein FliP [Nitrosomonas sp. AL212]
          Length = 248

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 86/193 (44%), Positives = 135/193 (69%), Gaps = 4/193 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P L++M++ F R IIV S+LR  +G  S PPN V++ LALF+TF++MSP +DR       
Sbjct: 58  PALVLMMSSFTRIIIVLSLLRMALGTQSSPPNQVLLGLALFLTFFIMSPVIDRVYSEAYL 117

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P   ++I+   A ++ + P   FM + TRE DL+LF+ ++ S     ++   D +  +IL
Sbjct: 118 PFSEDKISIMEAAEKASVPLKSFMLHQTRETDLALFVQISESE----ELESRDQVPLKIL 173

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           +P+++ SEL+ +F+IGF+I +PFLIID++V++++MAMGMMML P  ISLPFK++ FVL+D
Sbjct: 174 VPAYITSELKTAFQIGFVIFIPFLIIDLVVSSVLMAMGMMMLSPMIISLPFKLMLFVLVD 233

Query: 233 GWSLLVENLVKSF 245
           GW L++ +L +SF
Sbjct: 234 GWHLIIGSLTQSF 246


>gi|167770202|ref|ZP_02442255.1| hypothetical protein ANACOL_01545 [Anaerotruncus colihominis DSM
           17241]
 gi|167667524|gb|EDS11654.1| hypothetical protein ANACOL_01545 [Anaerotruncus colihominis DSM
           17241]
          Length = 270

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 99/240 (41%), Positives = 148/240 (61%), Gaps = 10/240 (4%)

Query: 16  LVFAKSSLHDVMNIPADLSISTWIVRTFG------IFTILSIAPILLIMVTCFPRFIIVF 69
           LV    + H    +  DL         FG      + T+L++AP +LIM+T F R IIV 
Sbjct: 30  LVCCTITAHAAPMVTVDLGSGDASGNAFGLIDMLFVVTLLALAPSILIMMTSFTRIIIVL 89

Query: 70  SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129
           S LR  +G+   PPN V+I LALF+T ++M P +++  E   QP    QIT+  A+ R  
Sbjct: 90  SFLRNALGIQQTPPNQVLIGLALFLTLFIMFPVINQINEEAYQPYRQGQITQEEAVTRGI 149

Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSS---HRNTDITKN-DHIEYRILIPSFMISELRRSF 185
            P   FM   TR  D++LF+ +A+      +   I ++   +   I+IP+F+ SEL+++F
Sbjct: 150 RPLKEFMIRQTRTDDVNLFLSIANDKRPPEQAITIPEDLTELGMEIVIPAFITSELKQAF 209

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            IGFL+ +PFLIIDM+V++ +M+MGM+MLPP+ ISLPFK++ FV++DGW LL+ NLV+ F
Sbjct: 210 MIGFLLFIPFLIIDMVVSSTLMSMGMVMLPPSMISLPFKIMMFVMVDGWGLLLGNLVRGF 269


>gi|55977145|gb|AAV68366.1| FliP [Herminiimonas arsenicoxydans]
          Length = 271

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 89/193 (46%), Positives = 130/193 (67%), Gaps = 4/193 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +L+M+T F R IIV S+LR  +G  S PPN VII L+LF+T +VMSP LD+      Q
Sbjct: 82  PAVLLMMTSFTRIIIVLSLLRQALGTQSSPPNQVIIGLSLFLTLFVMSPVLDKIYVDAYQ 141

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P   N+I    A+ +   P   FM   TRE DL+L++ M+    +  ++   + I  RIL
Sbjct: 142 PFSANKIQMGEALDKAVAPLKTFMIKQTRESDLALYVKMS----KGPELQGPEDIPLRIL 197

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           +P+F+ SEL+ +F+I F I +PFLIIDM+VA+++M+MGMMM+ P  ++LPFK++ FVL+D
Sbjct: 198 VPAFITSELKTAFQISFAIFIPFLIIDMVVASVLMSMGMMMVSPAIVALPFKLMLFVLVD 257

Query: 233 GWSLLVENLVKSF 245
           GW LL+ +L +SF
Sbjct: 258 GWQLLIGSLAQSF 270


>gi|126175118|ref|YP_001051267.1| flagellar biosynthesis protein FliP [Shewanella baltica OS155]
 gi|153001442|ref|YP_001367123.1| flagellar biosynthesis protein FliP [Shewanella baltica OS185]
 gi|125998323|gb|ABN62398.1| flagellar biosynthetic protein FliP [Shewanella baltica OS155]
 gi|151366060|gb|ABS09060.1| flagellar biosynthetic protein FliP [Shewanella baltica OS185]
          Length = 248

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 90/201 (44%), Positives = 135/201 (67%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T LS  P +LIM+T F R IIV SILR  +G+   P N V+I ++LFMTF++M+P  D
Sbjct: 51  LMTSLSFLPAMLIMLTSFTRIIIVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFD 110

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           R  + G++P +  Q+T   A ++  EP   FM    R  DL  F+++  S ++N  I   
Sbjct: 111 RIYDEGVKPYIEEQLTLQQAFEKGKEPLKGFMLGQVRTTDLKTFIEI--SGYKN--IKSP 166

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           +     +LIP+F+ SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P  +SLPFK
Sbjct: 167 EEAPMSVLIPAFITSELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFK 226

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGWSL++  L  SF
Sbjct: 227 IMLFVLVDGWSLVLGTLANSF 247


>gi|28211318|ref|NP_782262.1| flagellar biosynthesis protein FliP [Clostridium tetani E88]
 gi|28203758|gb|AAO36199.1| flagellar biosynthetic protein fliP [Clostridium tetani E88]
          Length = 261

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 89/206 (43%), Positives = 144/206 (69%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++ F + T LSI P  ++M+T F R  +VF  LR  MG    PPN V++ LALF+T ++M
Sbjct: 59  LKLFLMITALSILPSFIVMMTSFVRISVVFGFLRNAMGTQQSPPNQVLVGLALFLTIFIM 118

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +P      +  IQP + ++I +  A +  ++P   FM   TREKDL LF+++   S+ + 
Sbjct: 119 TPVYQIINKEAIQPFVKSEINQEQAFETGSKPLREFMLKQTREKDLKLFVEI---SNIDK 175

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           +ITK +++   +++PSF+ISEL+ +F+IGFL+ +PFL+ID++VA+++M+MGM MLPP  +
Sbjct: 176 NITK-ENVPLYVVVPSFIISELKTAFQIGFLLYIPFLVIDLVVASVLMSMGMFMLPPVMV 234

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FV++DGW LL+++L+ SF
Sbjct: 235 SLPFKLLLFVMVDGWHLLIKSLIMSF 260


>gi|289578418|ref|YP_003477045.1| flagellar biosynthetic protein FliP [Thermoanaerobacter italicus
           Ab9]
 gi|297544694|ref|YP_003676996.1| flagellar biosynthetic protein FliP [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|289528131|gb|ADD02483.1| flagellar biosynthetic protein FliP [Thermoanaerobacter italicus
           Ab9]
 gi|296842469|gb|ADH60985.1| flagellar biosynthetic protein FliP [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 221

 Score =  181 bits (460), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 89/194 (45%), Positives = 134/194 (69%), Gaps = 5/194 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +LIM+T F R +IV S LR  +G+  +PPN V+I LALF+T ++M+P         I
Sbjct: 32  APSILIMMTSFTRIVIVLSFLRNALGLQQMPPNQVLIGLALFLTLFIMAPIGQDINNNAI 91

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           +P    +IT+  A Q   +P   FM   TR+ DL+LF+ +A       +++  + +  R+
Sbjct: 92  KPYTEGKITQEEAYQNAIKPLKSFMLKQTRQNDLNLFVSLAK-----INVSNVEDLPMRV 146

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           +IP+F+ISEL+ +FEIGF+I +PFLIID+IVA+++M+MGM MLPP  ISLPFKV+ F+L+
Sbjct: 147 VIPAFIISELKTAFEIGFIIYIPFLIIDIIVASVLMSMGMFMLPPVLISLPFKVLLFILV 206

Query: 232 DGWSLLVENLVKSF 245
           DGW+L+V++L+  F
Sbjct: 207 DGWNLVVKSLILGF 220


>gi|83646770|ref|YP_435205.1| flagellar biosynthesis protein FliP [Hahella chejuensis KCTC 2396]
 gi|83634813|gb|ABC30780.1| flagellar biosynthetic protein FliP [Hahella chejuensis KCTC 2396]
          Length = 243

 Score =  181 bits (460), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 92/206 (44%), Positives = 138/206 (66%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   + T+LS+AP LLI +T F R +IV S+LR   GM   PPN VII+L+LF+T + M
Sbjct: 41  LQVLAVLTVLSLAPALLIALTSFTRIVIVLSMLRYAFGMQQTPPNTVIIALSLFLTLFTM 100

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +P  ++  +  +QP +  ++  T A+     P   FM   TREKDL+L ++MA      T
Sbjct: 101 APVFNKIDQQAVQPYLAGELVFTEAVNAGLAPMREFMVRQTREKDLALAIEMAGEESPET 160

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
               ND I    LI +FM+SEL+ +F+IGF+I LPFL+ID++ A+++M+MGM+M+PP +I
Sbjct: 161 ---LND-ISNTSLITAFMLSELQTAFQIGFVIFLPFLLIDLVSASVLMSMGMIMVPPLTI 216

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLP K++ FVLI+GW+L+ + LV SF
Sbjct: 217 SLPVKILMFVLIEGWTLVAQALVGSF 242


>gi|168334561|ref|ZP_02692717.1| flagellar biosynthetic protein FliP [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 243

 Score =  181 bits (460), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 98/232 (42%), Positives = 144/232 (62%), Gaps = 4/232 (1%)

Query: 14  PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73
           P  VF+  +L+ +   P      T +   F I T L + P LL++ T F R II    L+
Sbjct: 14  PTRVFSLDALNSITQSP---EFGTSLQLVFFI-TFLGLIPTLLLVSTSFTRIIITLYFLK 69

Query: 74  TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133
           T MG   +PPN V+I LALF+TF+VMSP +       I P    QI++   +++ A P  
Sbjct: 70  TAMGTQQMPPNQVVIGLALFLTFFVMSPVVSTINTEAIVPYSEGQISQMEFLEQAAAPIK 129

Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
            FM   TR +D+ LFMD+++      +      + Y I++P+F+ISE+R  F IGFL+ L
Sbjct: 130 EFMVMQTRXEDIKLFMDLSNQPAIVDETNILAQLPYHIVVPAFIISEIRAGFVIGFLMYL 189

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           PF+IIDM+VA+++MAMGMMMLPP  ISLPFK++ F+++DGW L++  LV++F
Sbjct: 190 PFIIIDMVVASVLMAMGMMMLPPAMISLPFKILIFIIVDGWHLIIGELVETF 241


>gi|149193956|ref|ZP_01871054.1| flagellar biosynthesis protein P [Caminibacter mediatlanticus TB-2]
 gi|149135909|gb|EDM24387.1| flagellar biosynthesis protein P [Caminibacter mediatlanticus TB-2]
          Length = 243

 Score =  181 bits (460), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 96/199 (48%), Positives = 136/199 (68%), Gaps = 4/199 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           TIL +AP ++++ T F R ++VF  LR  +G    PP  +++SL+L +TF++M P    +
Sbjct: 48  TILVLAPSIVLVATSFVRLLVVFGFLRQALGTPQSPPTTLLVSLSLVLTFFIMEPYAKEA 107

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
            + GI+P M  +I    A  R  +PF  FM  NTREKDL+LF  + H  +  T     D 
Sbjct: 108 YKSGIKPYMEQKIGYEEAFNRAVKPFKRFMIKNTREKDLALFFRIRHLPNPKTI----DD 163

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
           +   IL+P+FMISEL+ +FEIGFLI LPFLIIDM+V++I+M++GMMMLPP  ISLPFK++
Sbjct: 164 VPLSILVPAFMISELKTAFEIGFLIFLPFLIIDMVVSSILMSLGMMMLPPVMISLPFKIL 223

Query: 227 FFVLIDGWSLLVENLVKSF 245
            F+L+DGW+L+V  LV SF
Sbjct: 224 VFILVDGWNLIVMGLVNSF 242


>gi|312884901|ref|ZP_07744591.1| flagellar biosynthesis protein FliP [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367378|gb|EFP94940.1| flagellar biosynthesis protein FliP [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 290

 Score =  181 bits (460), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 90/206 (43%), Positives = 136/206 (66%), Gaps = 5/206 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   + T+L   P ++I++T F R ++V SILR  MG+   P N VI+ +A+F+TF++M
Sbjct: 88  LQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIVGIAIFLTFFIM 147

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP L++  E  IQP +N QIT   A      P   FM   TR KDL  F++++ S+    
Sbjct: 148 SPVLNKINEDAIQPYINEQITARKAFDLAQIPMRDFMLKQTRVKDLETFVNISGSTA--- 204

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
             T    +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGMMML P  +
Sbjct: 205 --TATSDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGMMMLSPMIV 262

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 263 SLPFKLMLFVLVDGWNLILSTLAGSF 288


>gi|254785480|ref|YP_003072909.1| flagellar biosynthesis protein FliP [Teredinibacter turnerae T7901]
 gi|237683712|gb|ACR10976.1| flagellar biosynthetic protein FliP [Teredinibacter turnerae T7901]
          Length = 283

 Score =  181 bits (460), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 90/201 (44%), Positives = 132/201 (65%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T L+  P +L+M+T F R IIVF+ILR  MG+   P N ++I LALF+T ++M+P LD
Sbjct: 85  LMTALTFLPAILMMMTSFTRIIIVFAILRQAMGLQQSPSNQILIGLALFLTLFIMTPVLD 144

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
                 +QP MN Q++   A+     PF  FM  NTRE DL LF  +   +     +   
Sbjct: 145 EVNRTALQPYMNEQMSARQALDNAKLPFHAFMIANTRESDLDLFFRIGDIAP----VATP 200

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
             + + +L+P+F+ SEL+ +F+IGF+I +PFL+ID++VA+++MAMGMMML P  ISLPFK
Sbjct: 201 QDVPFTVLMPAFVTSELKTAFQIGFIIFIPFLVIDIVVASVLMAMGMMMLSPLIISLPFK 260

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW L++  L  SF
Sbjct: 261 IMLFVLVDGWGLIMGTLAASF 281


>gi|146278775|ref|YP_001168934.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557016|gb|ABP71629.1| flagellar biosynthetic protein FliP [Rhodobacter sphaeroides ATCC
           17025]
          Length = 236

 Score =  181 bits (460), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 94/212 (44%), Positives = 141/212 (66%), Gaps = 5/212 (2%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           S++T  V+   + T+LS+ P L +M+TCFP  + V SILR  +G+   PPN++I+SLALF
Sbjct: 29  SLTTRSVQLIVLITLLSLVPALGMMITCFPFIVTVLSILRQAIGLQQAPPNMLIVSLALF 88

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           +T+Y+M P    +   GI+PL  N+I    A+   + PF  FM       DL  F  +  
Sbjct: 89  LTWYIMDPVFTEAWTRGIEPLTRNEIDIQQALVLASAPFRGFMAARL---DLETFSTL-- 143

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
            + R  +I+      + +L+PSF++SE++R+FEIGFLI LPFLIID++VA ++M+MGMMM
Sbjct: 144 QALRPGEISPPLEAPFSVLVPSFLLSEIQRAFEIGFLIFLPFLIIDLVVAAVLMSMGMMM 203

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +PP  +S+PFK+ FFV+ DGWSL+   LV+S+
Sbjct: 204 VPPAVVSMPFKLAFFVVGDGWSLISGALVRSY 235


>gi|89094445|ref|ZP_01167385.1| flagellar biosynthetic protein FliP [Oceanospirillum sp. MED92]
 gi|89081337|gb|EAR60569.1| flagellar biosynthetic protein FliP [Oceanospirillum sp. MED92]
          Length = 250

 Score =  181 bits (459), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 87/201 (43%), Positives = 136/201 (67%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T+L+  P +L+M+T F R IIVF+ILR  +G+   P N +++ +A+F+T ++M+P LD
Sbjct: 52  LMTMLTFLPAMLMMMTSFARIIIVFAILRQALGLQQTPSNQIMVGMAMFLTLFIMTPVLD 111

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +      QP MN ++    A+Q  + PF  FM    RE DL LFM ++ +    T     
Sbjct: 112 QIYIQAAQPYMNEEMNVLEALQAASIPFREFMMLQVRESDLELFMRISGTPAVETP---- 167

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           + I + +L+P+F+ SEL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P  ISLPFK
Sbjct: 168 EQIPFTVLVPAFVTSELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPVIISLPFK 227

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW+L++  L  SF
Sbjct: 228 IMLFVLVDGWALVIGTLAASF 248


>gi|126734123|ref|ZP_01749870.1| flagellar biosynthetic protein FliP [Roseobacter sp. CCS2]
 gi|126716989|gb|EBA13853.1| flagellar biosynthetic protein FliP [Roseobacter sp. CCS2]
          Length = 243

 Score =  181 bits (459), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 90/214 (42%), Positives = 135/214 (63%), Gaps = 3/214 (1%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D S++T  ++   + T+LS+ P + IMVTCFP  I VF+ILR  +G+   PPN++I+SLA
Sbjct: 31  DGSLATRSIQLLILITVLSLVPGIAIMVTCFPFIITVFAILRQAIGLQQSPPNMLIVSLA 90

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           LF+T++VM P    +   GI PL+  QI       R  EP  VFM         +   D+
Sbjct: 91  LFLTYFVMEPVFREAWSNGIDPLIQGQIALEEGFVRTIEPLQVFMLTRIDPDTFTALADL 150

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
                 N   +        I++PSF++SE+ R+F++GFLI +PFLIID++VA ++M+MGM
Sbjct: 151 RPDVSGNGPASDA---PLSIVVPSFLLSEMERAFQVGFLIFMPFLIIDLVVAAVLMSMGM 207

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MM+PP  +SLPFK+ FFV+ DGW+L+  +LV+ +
Sbjct: 208 MMVPPAIVSLPFKLAFFVVADGWTLIATSLVQGY 241


>gi|317121829|ref|YP_004101832.1| flagellar biosynthetic protein FliP [Thermaerobacter marianensis
           DSM 12885]
 gi|315591809|gb|ADU51105.1| flagellar biosynthetic protein FliP [Thermaerobacter marianensis
           DSM 12885]
          Length = 227

 Score =  181 bits (459), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 84/194 (43%), Positives = 132/194 (68%), Gaps = 4/194 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +LIM+T F R ++  S LR+ +G    PPN V++ LALF+T +VM+P   +  +   
Sbjct: 34  APAILIMMTGFTRIVVALSFLRSALGTQQAPPNQVLVGLALFLTVFVMAPVWQQVYQDAW 93

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
            P  + QI +  A+QR  +P   FM   TRE+DL+LF++++        +   D +   +
Sbjct: 94  VPYRDGQIGQVEALQRAQQPVREFMFRYTRERDLALFLELSGRG----PVESRDQVPTYV 149

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           LIP+F ISEL+ +F+IGF++ +PFL+IDM+VA+ +M+MGM+M+PP  +SLPFK++ FVL+
Sbjct: 150 LIPAFAISELKTAFQIGFILYVPFLVIDMVVASTLMSMGMLMVPPMLVSLPFKILLFVLV 209

Query: 232 DGWSLLVENLVKSF 245
           DGW+L+V +L+ SF
Sbjct: 210 DGWNLVVRSLLASF 223


>gi|195953030|ref|YP_002121320.1| flagellar biosynthesis protein FliP [Hydrogenobaculum sp. Y04AAS1]
 gi|195932642|gb|ACG57342.1| flagellar biosynthetic protein FliP [Hydrogenobaculum sp. Y04AAS1]
          Length = 252

 Score =  181 bits (458), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 96/210 (45%), Positives = 144/210 (68%), Gaps = 3/210 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           T  +R   I T+LS+AP ++IM T F R + V S+LR  +G+ +VPPN VI SLALF+TF
Sbjct: 44  TEAIRLILILTVLSLAPSIIIMTTSFIRIVTVLSVLRQAIGLPNVPPNQVITSLALFLTF 103

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           YVM P +++  +  +QP + ++IT+   IQ   EP   FM  NT+      F+    S+ 
Sbjct: 104 YVMYPVINQINQNALQPYLQHKITDKQFIQNTIEPIKDFMVRNTKVSTERTFL--LASNI 161

Query: 157 RNTDITKN-DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
            N D  KN + +   ++IP+FM+SEL  +F+I FL+ LPFLIIDM+V+ I++AMG++M+P
Sbjct: 162 PNKDNIKNINDLPLSVVIPAFMVSELSIAFQIIFLLYLPFLIIDMVVSAILLAMGIIMIP 221

Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           PT ISLPFK++ FVL++GW L++ +LV+S+
Sbjct: 222 PTVISLPFKIMLFVLVNGWELVILSLVRSY 251


>gi|221639477|ref|YP_002525739.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides KD131]
 gi|221160258|gb|ACM01238.1| Flagellar biosynthetic protein fliP [Rhodobacter sphaeroides KD131]
          Length = 249

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 89/206 (43%), Positives = 135/206 (65%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   + T L++ P L++ ++ F R IIV SILR  +G    PPN V+I+LALF+TF+VM
Sbjct: 45  LQILALMTALTVLPSLVLGMSAFTRIIIVLSILRQALGTQQTPPNQVLIALALFLTFFVM 104

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            PTL    E  + P ++ QI    AI+R       F+  NTR+ DL +F D+A +     
Sbjct: 105 QPTLGALYEQSLSPFLDGQIEAQPAIERGGAIMKDFLIANTRQNDLLMFSDLAGAGPY-- 162

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
              +   + +  L+P+FM SEL+ +F+IGFL+ LPFL+IDM++A+I+MA+GMMML P  +
Sbjct: 163 --AEPTEVPFSTLLPAFMTSELKTAFQIGFLLFLPFLVIDMVIASILMALGMMMLSPMLV 220

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW+L V +L  ++
Sbjct: 221 SLPFKLLLFVLVDGWALTVGSLAATY 246


>gi|120598260|ref|YP_962834.1| flagellar biosynthesis protein FliP [Shewanella sp. W3-18-1]
 gi|146293662|ref|YP_001184086.1| flagellar biosynthesis protein FliP [Shewanella putrefaciens CN-32]
 gi|120558353|gb|ABM24280.1| flagellar biosynthetic protein FliP [Shewanella sp. W3-18-1]
 gi|145565352|gb|ABP76287.1| flagellar biosynthetic protein FliP [Shewanella putrefaciens CN-32]
 gi|319427061|gb|ADV55135.1| flagellar biosynthetic protein FliP [Shewanella putrefaciens 200]
          Length = 248

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 86/199 (43%), Positives = 133/199 (66%), Gaps = 4/199 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T LS  P ++IM+T F R I+V SILR  +G+   P N V+I ++LFMTF++M+P  D+ 
Sbjct: 53  TSLSFLPAMVIMLTSFTRIIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDKI 112

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
            + G++P ++ Q+T   A  +  EP   FM    R  DL  F+D+  S ++N  I   + 
Sbjct: 113 YDQGVKPYIDEQLTLQQAFDKGKEPLRAFMLGQVRTTDLKTFIDI--SGYQN--INSPEE 168

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
               +L+P+F+ SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P  +SLPFK++
Sbjct: 169 APMSVLVPAFITSELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIM 228

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FVL+DGW L++  L  SF
Sbjct: 229 LFVLVDGWGLVLGTLANSF 247


>gi|114332025|ref|YP_748247.1| flagellar biosynthesis protein FliP [Nitrosomonas eutropha C91]
 gi|114309039|gb|ABI60282.1| flagellar biosynthetic protein FliP [Nitrosomonas eutropha C91]
          Length = 261

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 97/244 (39%), Positives = 155/244 (63%), Gaps = 7/244 (2%)

Query: 5   CFFALFLVTPELVFA-KSSLHDVMNIPADLSISTWIVRTFGIFTILSIA--PILLIMVTC 61
           C   L +V    VFA K+ L  + + PA    +T+ +    +  + S+   P  ++M++ 
Sbjct: 20  CIILLLVVGISPVFAQKAGLPAITSTPAAGGGTTYSLSLQTLLLLTSMTFLPATVLMMSS 79

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F R IIV S+LR  +G  S PPN V++ LALF++F++MSP +D+       P   ++I+ 
Sbjct: 80  FTRIIIVLSLLRQALGTQSSPPNQVLVGLALFLSFFIMSPVIDKMYTEAYLPFSEDKISI 139

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
             A+ + ++P  +FM   TRE D++LF  ++ S     +I   D +  +IL+P+++ SEL
Sbjct: 140 IEAMDKASDPLKIFMLRQTRETDIALFARISGSE----EIESPDQVPMKILVPAYITSEL 195

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
           + +F+IGF++ +PFLIIDM+VA+ +MAMGMMML P  ISLPFK++ FVL+DGW LL+ +L
Sbjct: 196 KTAFQIGFIVFIPFLIIDMVVASTLMAMGMMMLSPMIISLPFKLMLFVLVDGWHLLIGSL 255

Query: 242 VKSF 245
            +SF
Sbjct: 256 TQSF 259


>gi|113969635|ref|YP_733428.1| flagellar biosynthesis protein FliP [Shewanella sp. MR-4]
 gi|113884319|gb|ABI38371.1| flagellar biosynthetic protein FliP [Shewanella sp. MR-4]
          Length = 248

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 86/201 (42%), Positives = 134/201 (66%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T LS  P ++IM+T F R I+V SILR  +G+   P N V+I ++LFMTF++M+P  D
Sbjct: 51  LMTSLSFIPAMVIMLTSFTRIIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFD 110

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +  + G++P ++ Q+T   A  +  EP   FM    R  DL  F+D+  S ++N  I   
Sbjct: 111 KIYDQGVKPYIDEQLTLQQAFDKGKEPLRAFMLGQVRTTDLKTFIDI--SGYQN--INSP 166

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           +     +L+P+F+ SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P  +SLPFK
Sbjct: 167 EEAPMSVLVPAFITSELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFK 226

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW L++  L  SF
Sbjct: 227 IMLFVLVDGWGLVMGTLANSF 247


>gi|160939626|ref|ZP_02086974.1| hypothetical protein CLOBOL_04518 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437417|gb|EDP15181.1| hypothetical protein CLOBOL_04518 [Clostridium bolteae ATCC
           BAA-613]
          Length = 258

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 86/203 (42%), Positives = 135/203 (66%), Gaps = 2/203 (0%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           +F  L++ P L+IM+T F R +IV S LR  +G    PPN +++ LALF+T ++MSP + 
Sbjct: 55  LFLFLAVVPSLIIMMTSFTRIVIVLSFLRNALGTQQSPPNQILVGLALFLTLFIMSPVIA 114

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
                  QP    QIT   A +R  EP   FM   T +K L LF+ ++ +   +    + 
Sbjct: 115 SVNTQAYQPYREGQITREQAFERAQEPMKEFMLKQTEKKSLDLFLSISKAQPPDISQGQE 174

Query: 165 DHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
            +++  +  ++PSF++SEL ++F +GFLI +PFLIID++V++ +M+MGM+MLPPT I+LP
Sbjct: 175 GYMKLGLTTIVPSFILSELNKAFTMGFLIFIPFLIIDLVVSSTLMSMGMVMLPPTMIALP 234

Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245
           FK++ FVL+DGWSL+++ LV+SF
Sbjct: 235 FKIMMFVLVDGWSLVIKTLVQSF 257


>gi|56460298|ref|YP_155579.1| flagellar biosynthesis protein FliP [Idiomarina loihiensis L2TR]
 gi|56179308|gb|AAV82030.1| Flagellar biosynthesis protein FliP [Idiomarina loihiensis L2TR]
          Length = 248

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 94/243 (38%), Positives = 147/243 (60%), Gaps = 6/243 (2%)

Query: 5   CFFALFLVTPELVFAKSSLH--DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCF 62
           C  A+  + PE  FA   L    V   P      +  ++   I T L+  P ++IM+T F
Sbjct: 8   CILAVLCLLPEQAFAWQDLTAVTVKTNPDGSEEYSVTLQILAIMTALTFIPAMVIMMTSF 67

Query: 63  PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122
            R IIV +ILR  +G+   P N V++ +ALF++F++M+P L+   +  +QP +N +I   
Sbjct: 68  TRIIIVLAILRQAIGLQQSPSNQVLLGIALFLSFFIMTPVLNEINDKALQPYLNEEIQSM 127

Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182
            A+ R   P   FM   TR  DL  F++++ +      + + + +   +LIPSF+ SEL+
Sbjct: 128 EAVDRAKAPIKAFMLAQTRLTDLETFVEISGTEG----VQEPEDVPMSVLIPSFITSELK 183

Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
            +F+IGF++ +PFLIID++VA+++MAMGMMML P  +SLPFK++ FVL+DGWSL +  L 
Sbjct: 184 TAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWSLTMSTLA 243

Query: 243 KSF 245
            SF
Sbjct: 244 GSF 246


>gi|114046865|ref|YP_737415.1| flagellar biosynthesis protein FliP [Shewanella sp. MR-7]
 gi|113888307|gb|ABI42358.1| flagellar biosynthetic protein FliP [Shewanella sp. MR-7]
          Length = 248

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 86/201 (42%), Positives = 134/201 (66%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T LS  P ++IM+T F R I+V SILR  +G+   P N V+I ++LFMTF++M+P  D
Sbjct: 51  LMTSLSFIPAMVIMLTSFTRIIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFD 110

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +  + G++P ++ Q+T   A  +  EP   FM    R  DL  F+D+  S ++N  I   
Sbjct: 111 KIYDQGVKPYIDEQLTLQQAFDKGKEPLRAFMLGQVRTTDLKTFIDI--SGYQN--INSP 166

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           +     +L+P+F+ SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P  +SLPFK
Sbjct: 167 EEAPMSVLVPAFITSELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFK 226

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW L++  L  SF
Sbjct: 227 IMLFVLVDGWGLVMGTLANSF 247


>gi|332558490|ref|ZP_08412812.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides WS8N]
 gi|332276202|gb|EGJ21517.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides WS8N]
          Length = 267

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 90/206 (43%), Positives = 135/206 (65%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   + T L++ P L++ ++ F R IIV SILR  +G    PPN V+I+LALF+TF+VM
Sbjct: 63  LQILALMTALTVLPSLVLGMSAFTRIIIVLSILRQALGTQQTPPNQVLIALALFLTFFVM 122

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            PTL    E  + P ++ QI    AI+R       F+  NTR+ DL +F D+A +     
Sbjct: 123 QPTLGALYEQSLSPFLDGQIEAQPAIERGGAIMKDFLIANTRQNDLLMFSDLAGAG---- 178

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
              +   + +  L+P+FM SEL+ +F+IGFL+ LPFL+IDM++A+I+MA+GMMML P  +
Sbjct: 179 PYAEPTEVPFSTLLPAFMTSELKTAFQIGFLLFLPFLVIDMVIASILMALGMMMLSPMLV 238

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW+L V +L  S+
Sbjct: 239 SLPFKLLLFVLVDGWALTVGSLAASY 264


>gi|24374730|ref|NP_718773.1| flagellar biosynthesis protein FliP [Shewanella oneidensis MR-1]
 gi|24349390|gb|AAN56217.1|AE015759_9 flagellar biosynthetic protein FliP [Shewanella oneidensis MR-1]
          Length = 247

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 86/199 (43%), Positives = 133/199 (66%), Gaps = 4/199 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T LS  P ++IM+T F R I+V SILR  +G+   P N V+I ++LFMTF++M+P  D+ 
Sbjct: 52  TSLSFIPAMVIMLTSFTRIIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDKI 111

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
            + G++P ++ Q+T   A  +  EP   FM    R  DL  F+D+  S ++N  I   + 
Sbjct: 112 YDQGVKPYIDEQLTLQQAFDKGKEPLRAFMLGQVRTTDLKTFIDI--SGYQN--INSPEE 167

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
               +L+P+F+ SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P  +SLPFK++
Sbjct: 168 APMSVLVPAFITSELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIM 227

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FVL+DGW L++  L  SF
Sbjct: 228 LFVLVDGWGLVMGTLANSF 246


>gi|157737241|ref|YP_001489924.1| flagellar biosynthesis protein FliP [Arcobacter butzleri RM4018]
 gi|157699095|gb|ABV67255.1| flagellar biosynthetic protein FliP [Arcobacter butzleri RM4018]
          Length = 241

 Score =  180 bits (457), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 89/188 (47%), Positives = 128/188 (68%), Gaps = 4/188 (2%)

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           MVT F R IIVFS+LR  MG+   PP+ +IISL+L +T ++M P   ++ +  I P M+ 
Sbjct: 57  MVTSFTRLIIVFSLLRQAMGLQQTPPSQIIISLSLILTIFIMEPYAKKAWDDAIVPYMDE 116

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
           +I    A  +   PF  FM  NTRE DL+LF    +   +  +    + +   +L+P+F+
Sbjct: 117 KIGYEVAFDKGVAPFKEFMIKNTREADLALF----YRIKKEPNPKNIEAVPLTLLMPAFI 172

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
           +SELR +FEIGFLI LPFL+ID+IVA+I+M++GMMMLPP  ISLP K+IFF+++DGW L+
Sbjct: 173 VSELRTAFEIGFLIFLPFLVIDIIVASILMSLGMMMLPPVMISLPIKIIFFIVVDGWQLI 232

Query: 238 VENLVKSF 245
           + NL +SF
Sbjct: 233 IGNLAQSF 240


>gi|117919800|ref|YP_868992.1| flagellar biosynthesis protein FliP [Shewanella sp. ANA-3]
 gi|117612132|gb|ABK47586.1| flagellar biosynthetic protein FliP [Shewanella sp. ANA-3]
          Length = 248

 Score =  180 bits (457), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 86/201 (42%), Positives = 134/201 (66%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T LS  P ++IM+T F R I+V SILR  +G+   P N V+I ++LFMTF++M+P  D
Sbjct: 51  LMTSLSFIPAMVIMLTSFTRIIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFD 110

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +  + G++P ++ Q+T   A  +  EP   FM    R  DL  F+D+  S ++N  I   
Sbjct: 111 KIYDQGVKPYIDEQLTLQQAFDKGKEPLRAFMLGQVRTTDLKTFIDI--SGYQN--INSP 166

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           +     +L+P+F+ SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P  +SLPFK
Sbjct: 167 EEAPMSVLVPAFITSELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFK 226

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW L++  L  SF
Sbjct: 227 IMLFVLVDGWGLVMGTLANSF 247


>gi|225181595|ref|ZP_03735036.1| flagellar biosynthetic protein FliP [Dethiobacter alkaliphilus AHT
           1]
 gi|225167703|gb|EEG76513.1| flagellar biosynthetic protein FliP [Dethiobacter alkaliphilus AHT
           1]
          Length = 257

 Score =  180 bits (457), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 84/193 (43%), Positives = 133/193 (68%), Gaps = 4/193 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P  L ++T F R ++V   +R  +     PPN VII LALF+TF++M+P   +  E  IQ
Sbjct: 68  PAFLALMTSFTRIVVVLGFVRNALATQQTPPNQVIIGLALFLTFFIMAPIYTQVNETAIQ 127

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P +  +IT+  A+   A+P   FM + TREKDL+LF+++++     T     D +   +L
Sbjct: 128 PYLEEEITQEEALAIGAQPLREFMFHQTREKDLALFVNISNGERPET----RDDVPMHVL 183

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           +P+F+ISEL+ +F++GF++ +PF+IIDM+VA+ +M+MGM MLPP  +SLPFK++ FV++D
Sbjct: 184 VPAFVISELKTAFQMGFMLFIPFVIIDMVVASTLMSMGMFMLPPVMVSLPFKLLLFVMVD 243

Query: 233 GWSLLVENLVKSF 245
           GW L+V++LV+SF
Sbjct: 244 GWHLVVKSLVESF 256


>gi|242281272|ref|YP_002993401.1| flagellar biosynthesis protein FliP [Desulfovibrio salexigens DSM
           2638]
 gi|242124166|gb|ACS81862.1| flagellar biosynthetic protein FliP [Desulfovibrio salexigens DSM
           2638]
          Length = 252

 Score =  180 bits (457), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 96/239 (40%), Positives = 146/239 (61%), Gaps = 8/239 (3%)

Query: 11  LVTPELVFAKSSLHDV-MNIPADLSISTWIVRTFGIF---TILSIAPILLIMVTCFPRFI 66
           L+ P   FA+ ++  + +N+ A       + +   I    TIL +AP +L+ +T F R I
Sbjct: 17  LLIPAAAFAQETVPTLTLNLAAGQEEPEQVAKLLEILFLLTILGMAPSILLTMTSFTRII 76

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IVF  LR  MG   +PPN ++ SLA+FMT  +M PT     +  +QP +N +I  + AI 
Sbjct: 77  IVFHFLRQAMGTQQMPPNQILASLAIFMTVVIMMPTGKAINDSALQPYLNEEIGFSEAID 136

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           R   P   F+  +TREKDLS+F  +       T     + +   +L+ ++ ISEL+  F 
Sbjct: 137 RAQVPIRTFLFKHTREKDLSIFYSITGEKRPET----KEDVNTMLLVAAYTISELKTGFT 192

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGFLI +PFLI+DM++A+I++AMGMMMLPP  +SLPFK++ F+++DGWSLL  ++V +F
Sbjct: 193 IGFLIYVPFLILDMVIASILLAMGMMMLPPAMVSLPFKILLFIMVDGWSLLTGSIVNTF 251


>gi|59712449|ref|YP_205225.1| flagellar biosynthesis protein FliP [Vibrio fischeri ES114]
 gi|197336177|ref|YP_002156668.1| flagellar biosynthesis protein [Vibrio fischeri MJ11]
 gi|59480550|gb|AAW86337.1| flagellar biosynthesis protein FliP [Vibrio fischeri ES114]
 gi|197317667|gb|ACH67114.1| flagellar biosynthesis protein [Vibrio fischeri MJ11]
          Length = 289

 Score =  180 bits (457), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 92/218 (42%), Positives = 139/218 (63%), Gaps = 8/218 (3%)

Query: 28  NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87
           N   D S++  I+   G+ T+L   P ++I++T F R ++V SILR  MG+   P N VI
Sbjct: 78  NGGEDYSVNLQIL---GLMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVI 134

Query: 88  ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147
           I +A+F+TF++M+P  D+     IQP +N +IT   A      P   FM   TR KDL  
Sbjct: 135 IGIAMFLTFFIMAPVFDKVNNTAIQPYINEEITAREAFDVAQVPMKEFMLAQTRVKDLET 194

Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
           F++M+     N +      +   ++IP+F+ SEL+ +F+IGF++ LPFLIID++VA+++M
Sbjct: 195 FVNMSGVEAENPE-----DVPITVVIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLM 249

Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           AMGMMML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 250 AMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287


>gi|315636956|ref|ZP_07892180.1| flagellar biosynthetic protein FliP [Arcobacter butzleri JV22]
 gi|315478786|gb|EFU69495.1| flagellar biosynthetic protein FliP [Arcobacter butzleri JV22]
          Length = 241

 Score =  180 bits (457), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 89/188 (47%), Positives = 128/188 (68%), Gaps = 4/188 (2%)

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           MVT F R IIVFS+LR  MG+   PP+ +IISL+L +T ++M P   ++ +  I P M+ 
Sbjct: 57  MVTSFTRLIIVFSLLRQAMGLQQTPPSQIIISLSLILTIFIMEPYAKKAWDDAIVPYMDE 116

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
           +I    A  +   PF  FM  NTRE DL+LF    +   +  +    + +   +L+P+F+
Sbjct: 117 KIGYEVAFDKGVAPFKEFMIKNTREADLALF----YRIKKEPNPKNIEAVPLTLLMPAFI 172

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
           +SELR +FEIGFLI LPFL+ID+IVA+I+M++GMMMLPP  ISLP K+IFF+++DGW L+
Sbjct: 173 VSELRTAFEIGFLIFLPFLVIDIIVASILMSLGMMMLPPVMISLPIKIIFFIVVDGWQLI 232

Query: 238 VENLVKSF 245
           + NL +SF
Sbjct: 233 IGNLAQSF 240


>gi|309779459|ref|ZP_07674220.1| flagellar biosynthetic protein FliP [Ralstonia sp. 5_7_47FAA]
 gi|308921700|gb|EFP67336.1| flagellar biosynthetic protein FliP [Ralstonia sp. 5_7_47FAA]
          Length = 249

 Score =  180 bits (457), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 93/207 (44%), Positives = 135/207 (65%), Gaps = 4/207 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T    T L   P +++M++ F R IIV S+LR  +G  + PPN V+I LALF+TF+VM
Sbjct: 46  VQTLVFLTSLGFLPAIILMMSSFTRIIIVLSLLRHALGTQTSPPNQVLIGLALFLTFFVM 105

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP LD+       PL +++IT   A+   A P   FM   TRE DL+LF+ M +      
Sbjct: 106 SPVLDKVYTDAYVPLRDSKITVEQAMDTAATPLRQFMLKQTREPDLALFVKMGNMPA--- 162

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            I   +    R LIP+F+ SEL+ +F+IGF I +PFL+ID++VA ++M+MGMMM+ P+  
Sbjct: 163 -IASPEQTPMRALIPAFVTSELKSAFQIGFAIFIPFLVIDIVVAAVLMSMGMMMVTPSIF 221

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
           SLPFK++ FVL+DGW LL+ +L +SF+
Sbjct: 222 SLPFKIMLFVLVDGWHLLLGSLAQSFV 248


>gi|229918642|ref|YP_002887288.1| flagellar biosynthetic protein FliP [Exiguobacterium sp. AT1b]
 gi|229470071|gb|ACQ71843.1| flagellar biosynthetic protein FliP [Exiguobacterium sp. AT1b]
          Length = 221

 Score =  180 bits (457), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 93/224 (41%), Positives = 147/224 (65%), Gaps = 5/224 (2%)

Query: 21  SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
           ++   ++N+    S ST I +   + T+L++AP  LI++TCF R ++V S +R  +G   
Sbjct: 2   TTFEQLINLETPDSTSTSI-KLLILLTLLTLAPSFLILMTCFTRVVVVLSFIRPALGTQQ 60

Query: 81  VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
            PPN +I+ LALF+T +VMSP L    E  ++P ++++I++  A    +     FM   T
Sbjct: 61  TPPNQLIVGLALFITLFVMSPVLSDLNENALKPYLDDKISQDEAFDEASGTMKEFMSKYT 120

Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
           R++DL LF+   +     T     D +    L+P++ ISEL+ +F+IGF+I LPFLIIDM
Sbjct: 121 RQEDLQLFLKYGNYEQPET----LDDVPLLALVPAYAISELKTAFQIGFMIFLPFLIIDM 176

Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           +VA+++M+MGMMMLPP  I+LPFK++ FVL+DGW L+VE+L++S
Sbjct: 177 VVASVLMSMGMMMLPPVMIALPFKLLLFVLVDGWHLIVESLLRS 220


>gi|268316332|ref|YP_003290051.1| flagellar biosynthetic protein FliP [Rhodothermus marinus DSM 4252]
 gi|262333866|gb|ACY47663.1| flagellar biosynthetic protein FliP [Rhodothermus marinus DSM 4252]
          Length = 269

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 91/195 (46%), Positives = 141/195 (72%), Gaps = 4/195 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP ++I+ T F R +++FSILRT +G+   PP  V+I LALF+T ++M P  D+  +  +
Sbjct: 77  APAIIILTTSFTRLVVIFSILRTALGLQQSPPTQVLIGLALFLTLFIMYPVFDQIHDEAL 136

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           +P ++ +IT+  A++R A P   FM   TREKDL LFMD+A+    +    + + + + I
Sbjct: 137 RPYLDGEITQQVALERAAAPLRAFMLRQTREKDLMLFMDLANVEAFD----RPEDVPFYI 192

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           L+P+F+ISELR +F+IGF+I LPFL++D+IVA+++M+MGMMMLPP  ISLP K++ FVL 
Sbjct: 193 LVPAFVISELRIAFQIGFMIFLPFLLVDLIVASVLMSMGMMMLPPVMISLPLKLLLFVLA 252

Query: 232 DGWSLLVENLVKSFI 246
           DGW L+VE++V+ ++
Sbjct: 253 DGWYLVVESVVRGYL 267


>gi|253688962|ref|YP_003018152.1| flagellar biosynthetic protein FliP [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251755540|gb|ACT13616.1| flagellar biosynthetic protein FliP [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 258

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 108/247 (43%), Positives = 158/247 (63%), Gaps = 10/247 (4%)

Query: 2   IRYCF-FALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           +RY    +L L+ P  V+A+  L  ++  P      +W   V+T    T L+  P  L+M
Sbjct: 17  LRYGLAISLLLLAPS-VWAQ--LPGIVTQPLPNGGQSWTLSVQTLVFLTSLTFIPAALLM 73

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIV S+LR  +G  + PPN V++ L LF+TF+VMSP L+R  E    P   +Q
Sbjct: 74  MTSFTRIIIVLSLLRNALGTPTAPPNQVLLGLTLFLTFFVMSPVLNRVYEEAYLPFSQDQ 133

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   AI+R AEP   FM   TRE DL+LF  +A       +I   + +  R+L+P+F+ 
Sbjct: 134 ISMEVAIERGAEPVREFMLRQTRETDLALFTRLAEIP----EIQGPEAVPMRVLLPAFVT 189

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF I +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+
Sbjct: 190 SELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLL 249

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 250 GSLAQSF 256


>gi|304409949|ref|ZP_07391568.1| flagellar biosynthetic protein FliP [Shewanella baltica OS183]
 gi|307302338|ref|ZP_07582096.1| flagellar biosynthetic protein FliP [Shewanella baltica BA175]
 gi|304351358|gb|EFM15757.1| flagellar biosynthetic protein FliP [Shewanella baltica OS183]
 gi|306914376|gb|EFN44797.1| flagellar biosynthetic protein FliP [Shewanella baltica BA175]
          Length = 248

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 89/201 (44%), Positives = 135/201 (67%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T LS  P +LIM+T F R IIV SILR  +G+   P N V+I ++LFMTF++M+P  +
Sbjct: 51  LMTSLSFLPAMLIMLTSFTRIIIVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFE 110

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           R  + G++P +  Q+T   A ++  EP   FM    R  DL  F+++  S ++N  I   
Sbjct: 111 RIYDEGVKPYIEEQLTLQQAFEKGKEPLKGFMLGQVRTTDLKTFIEI--SGYKN--IKSP 166

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           +     +LIP+F+ SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P  +SLPFK
Sbjct: 167 EEAPMSVLIPAFITSELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFK 226

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGWSL++  L  SF
Sbjct: 227 IMLFVLVDGWSLVLGTLANSF 247


>gi|149908447|ref|ZP_01897110.1| flagellar biosynthesis protein [Moritella sp. PE36]
 gi|149808610|gb|EDM68545.1| flagellar biosynthesis protein [Moritella sp. PE36]
          Length = 248

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 89/206 (43%), Positives = 134/206 (65%), Gaps = 5/206 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   + T LS  P  LIM+T F R IIV SILR  +G+   P N V++ + LF++F++M
Sbjct: 46  LQILAMMTALSFLPAALIMMTSFTRIIIVLSILRQALGLQQSPSNQVLVGITLFLSFFIM 105

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP  DR  +  +QP ++ ++T   A ++   P   FM   TR  DL  FM +A       
Sbjct: 106 SPVFDRINDNALQPYLSEELTSMQAFEQAKLPMQQFMLAQTRVTDLDTFMRIAK-----V 160

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           +    + + +R+LIP+F+ SEL+ +F+IGF++ +PFLIID++VA+I+MAMGMMML P  +
Sbjct: 161 EADSPEEVPFRVLIPAFVTSELKTAFQIGFMVFIPFLIIDLVVASILMAMGMMMLSPMIV 220

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGWSL++  L  SF
Sbjct: 221 SLPFKLMLFVLVDGWSLILGTLANSF 246


>gi|307721191|ref|YP_003892331.1| flagellar biosynthetic protein FliP [Sulfurimonas autotrophica DSM
           16294]
 gi|306979284|gb|ADN09319.1| flagellar biosynthetic protein FliP [Sulfurimonas autotrophica DSM
           16294]
          Length = 245

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 90/193 (46%), Positives = 132/193 (68%), Gaps = 4/193 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +++++T F RF+IVF  LR  +G   VPP  +++ LA+ +TF+VM P   ++   GI
Sbjct: 55  APAMVLVMTTFTRFVIVFGFLRQALGTQQVPPTQLLVMLAMILTFFVMEPIGTKAYNQGI 114

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           +P +  +I    A  +   PF  FM  NTREKDL+LF+ +    +  +       +   I
Sbjct: 115 KPYVAKEIGYEEAFTKTTLPFKNFMIRNTREKDLALFLRIRKMQNPKSV----ADVPLSI 170

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           +IP+F+ISE++ +FEIGFL+ LPFL+IDM+VA+I+M+MGMMMLPP  ISLPFK++ FVLI
Sbjct: 171 VIPAFIISEMKTAFEIGFLLFLPFLVIDMVVASILMSMGMMMLPPVMISLPFKILVFVLI 230

Query: 232 DGWSLLVENLVKS 244
           DGW+LL+ NL+ S
Sbjct: 231 DGWNLLIGNLIFS 243


>gi|269792928|ref|YP_003317832.1| flagellar biosynthetic protein FliP [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100563|gb|ACZ19550.1| flagellar biosynthetic protein FliP [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 247

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 92/215 (42%), Positives = 142/215 (66%), Gaps = 9/215 (4%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D++++  IV    + T+LS+AP +++M+T F R ++V   +R  MG+  +PPN VI SLA
Sbjct: 40  DVALTLQIV---ALMTVLSMAPAIILMLTSFTRILVVLGFVRNAMGLQQMPPNQVIASLA 96

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           LF+TF+ MSP  D+  +  + P M  +I+   A   V  P   FM   TRE +LSL + +
Sbjct: 97  LFLTFFTMSPVWDQVYKGALVPYMRGEISAQRAFDGVEGPVRAFMLRQTREPELSLMVRL 156

Query: 152 AHSSHRNTDITKN-DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           A          KN   +  R+LIP+F+ISEL+ +F++G +I +PF+++DMIV++++M+MG
Sbjct: 157 AKMKQ-----PKNPSEVPTRVLIPAFVISELKTAFQMGVVIFIPFIVVDMIVSSVLMSMG 211

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+MLPP  ISLPFKV+ FV+ DGW L++ +LV SF
Sbjct: 212 MIMLPPMMISLPFKVLLFVMADGWDLVIASLVSSF 246


>gi|239909255|ref|YP_002955997.1| flagellar biosynthetic protein FliP [Desulfovibrio magneticus RS-1]
 gi|239799122|dbj|BAH78111.1| flagellar biosynthetic protein FliP [Desulfovibrio magneticus RS-1]
          Length = 253

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 92/199 (46%), Positives = 133/199 (66%), Gaps = 4/199 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T+LS+AP  ++ VT F R I+VFS LR  MG+  VPP  ++ SLA+F+T  +M PT    
Sbjct: 56  TVLSLAPSFVLTVTSFTRIIVVFSFLRQAMGVQQVPPTQILASLAIFLTAVIMYPTGKAI 115

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
            +  +QP MN +I  T A+++   P   F+  +TREKDLS+F  +     R  D      
Sbjct: 116 NDNALQPYMNEEIGFTEALKKAEAPLREFLFKHTREKDLSVFYTITKM-ERPKD---KGE 171

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
           +   +L   FMISEL+ +F IGFLI +PFLI+DM++++I++AMGMMMLPP +I++PFK++
Sbjct: 172 VPTIMLAAGFMISELKTAFTIGFLIYIPFLILDMVISSILLAMGMMMLPPATIAMPFKLL 231

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FVL+DGW L+V +LV SF
Sbjct: 232 LFVLVDGWGLIVASLVNSF 250


>gi|88813211|ref|ZP_01128451.1| flagellar biosynthesis protein [Nitrococcus mobilis Nb-231]
 gi|88789533|gb|EAR20660.1| flagellar biosynthesis protein [Nitrococcus mobilis Nb-231]
          Length = 245

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 98/246 (39%), Positives = 150/246 (60%), Gaps = 6/246 (2%)

Query: 2   IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMV 59
           +R     + L  P +  A+ +  + + + +     TW V  +   + T L++ P  L+M+
Sbjct: 1   MRALLMVVLLWVPGVALAQGTGIEAVTVQSAGDGETWSVSLQILAVMTALTLLPAALLMM 60

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R IIV +ILR  +G  S P N V+I LALF+T +VMSP L +  E+ +QP +N  +
Sbjct: 61  TAFTRIIIVLAILRQAIGTTSTPSNQVLIGLALFLTVFVMSPVLTQINEVALQPYLNEGM 120

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
               A++  A P   FM   TREKD+ LF+++A +      +     + +  L+P+FM S
Sbjct: 121 DAEQAVRAAAGPLRAFMLAQTREKDIGLFLNIADAGP----VASPQEVPFSTLVPAFMTS 176

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL  +F+IGF++ LPFL+ID++VA+ +M+MGM+ML P  ISLPFK++ FVLIDGWSL++ 
Sbjct: 177 ELETAFQIGFIVFLPFLVIDLVVASTLMSMGMLMLSPMLISLPFKIMLFVLIDGWSLIMG 236

Query: 240 NLVKSF 245
            L  SF
Sbjct: 237 TLAGSF 242


>gi|254438171|ref|ZP_05051665.1| flagellar biosynthetic protein FliP [Octadecabacter antarcticus
           307]
 gi|198253617|gb|EDY77931.1| flagellar biosynthetic protein FliP [Octadecabacter antarcticus
           307]
          Length = 258

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 95/251 (37%), Positives = 151/251 (60%), Gaps = 17/251 (6%)

Query: 5   CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI---------VRTFGIFTILSIAPIL 55
           C    F + P   F      D   +PA L+IST           ++   + T+L+I P  
Sbjct: 15  CVILAFCIVP---FGSVYAQDGGGLPA-LNISTGADGETTYSLSLQILALMTVLTILPSF 70

Query: 56  LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115
           L+ VT F R IIV SILR  +G    PPN V++S+ALF+TFYVM+PT +      I P +
Sbjct: 71  LLGVTAFTRIIIVLSILRQALGTQQTPPNQVLLSIALFLTFYVMAPTFEDIYNNAISPYL 130

Query: 116 NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPS 175
              +    AI+  A     F+  NTRE +L++F +MA     +     N+ + Y +L+P+
Sbjct: 131 AGDLPPVAAIEGAAGILSEFLVVNTREAELAMFAEMAG----DEPYASNEDVPYTVLLPA 186

Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235
           F+ SEL+ +F+IGFL+ LPFL+ID+++A+I+M++GMMML P  ++LPFK++ FVL+DGW+
Sbjct: 187 FITSELKTAFQIGFLLFLPFLVIDLVIASILMSLGMMMLSPMLVALPFKLLLFVLVDGWA 246

Query: 236 LLVENLVKSFI 246
           + + ++  +++
Sbjct: 247 MTIGSIASTYV 257


>gi|126730033|ref|ZP_01745845.1| flagellar biosynthetic protein FliP [Sagittula stellata E-37]
 gi|126709413|gb|EBA08467.1| flagellar biosynthetic protein FliP [Sagittula stellata E-37]
          Length = 245

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 89/194 (45%), Positives = 126/194 (64%), Gaps = 3/194 (1%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP + IMVTCFP  + V +ILR  +G+   PPN++I+SLALF+T++VM P    + + G+
Sbjct: 54  APGIAIMVTCFPFMVTVLAILRQAVGLQQSPPNMLIVSLALFLTYFVMEPVFTEAWDTGV 113

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           QPL+  QI    A  R   PF  FM   T         D+     R T +     +   +
Sbjct: 114 QPLIEEQIEVEEAAIRTLAPFRDFMAGRTDPDTYRAMADL-RPDARETVLAPEAPLS--V 170

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           L+PSFM+SE+ R+F++GFLI LPFLIID++VA ++M+MGMMM+PP  +SLPFK+ FFV+ 
Sbjct: 171 LVPSFMLSEVARAFQVGFLIFLPFLIIDLVVAAVLMSMGMMMVPPAIVSLPFKLAFFVVA 230

Query: 232 DGWSLLVENLVKSF 245
           DGWSLL  +LV+ +
Sbjct: 231 DGWSLLAGSLVRGY 244


>gi|51246523|ref|YP_066407.1| flagellar biosynthesis protein FliP [Desulfotalea psychrophila
           LSv54]
 gi|50877560|emb|CAG37400.1| probable flagellar biosynthetic protein (FliP) [Desulfotalea
           psychrophila LSv54]
          Length = 260

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 87/201 (43%), Positives = 139/201 (69%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + TI+S+AP +++M+TCF R +IV   +R  MG  ++PPN ++I  ALF+TF++MSPT++
Sbjct: 63  VLTIISVAPAIVLMMTCFTRIVIVLGFVRQAMGTQNMPPNQIVIGFALFLTFFIMSPTIN 122

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +  +  +QP +  +I++  A+         FM +  +E +LS    MA  +       K 
Sbjct: 123 KINDTALQPYLAKEISQGKALDLTVFSMREFMFSQVQESELSF---MAELTIEKEPKDKA 179

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D I    LIP++M+SEL+ +F +GF++ +PFL+IDMIVA+++M+MGMMMLPP  IS+PFK
Sbjct: 180 D-IPTTTLIPAYMLSELKTAFSMGFMVYIPFLVIDMIVASVLMSMGMMMLPPVIISMPFK 238

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ F+L+DGW+L+V +LVKSF
Sbjct: 239 LLLFILVDGWTLIVGSLVKSF 259


>gi|221069288|ref|ZP_03545393.1| flagellar biosynthetic protein FliP [Comamonas testosteroni KF-1]
 gi|220714311|gb|EED69679.1| flagellar biosynthetic protein FliP [Comamonas testosteroni KF-1]
          Length = 249

 Score =  179 bits (455), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 89/206 (43%), Positives = 137/206 (66%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++T   FT LS  P +L+++T F R +IV S+LR  +G  S PPN V+I L+LF+T +VM
Sbjct: 46  IQTLLFFTALSFLPAILLLMTGFTRIVIVLSLLRQALGTQSAPPNQVVIGLSLFLTMFVM 105

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            PTLD+  +    P   N I+   AI++   P   FM   TR+ D +LF  +A     + 
Sbjct: 106 GPTLDKVYQDAYLPYTQNSISFEQAIEKAEAPMRGFMLKQTRQSDFALFKRLAK---LDA 162

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           ++T  +    R+L+P+F+ SEL+ +F+IGF+I +PFLIIDM+V++I+M++GMMML P  +
Sbjct: 163 NVTA-ETAPLRVLVPAFVTSELKTAFQIGFMIFIPFLIIDMVVSSILMSLGMMMLSPVLV 221

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           +LPFK++ FVL DGW+L++ +L  SF
Sbjct: 222 ALPFKLMLFVLADGWNLIIGSLAASF 247


>gi|261252332|ref|ZP_05944905.1| flagellar biosynthesis protein FliP [Vibrio orientalis CIP 102891]
 gi|260935723|gb|EEX91712.1| flagellar biosynthesis protein FliP [Vibrio orientalis CIP 102891]
          Length = 275

 Score =  179 bits (455), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 88/206 (42%), Positives = 137/206 (66%), Gaps = 5/206 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   + T+L   P ++I++T F R ++V SILR  MG+   P N VII +A+F+TF++M
Sbjct: 73  LQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIAIFLTFFIM 132

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP L++  +  IQP +N QI+   A      P   FM   TR KDL  F++++ S+    
Sbjct: 133 SPVLNKINDDAIQPYINEQISARQAFDLAQIPMKDFMLKQTRVKDLETFVNISGSTA--- 189

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
             T  + +   +LIP+F+ SEL+ +F+IGF++ LPFL+ID++VA+++MAMGMMML P  +
Sbjct: 190 --TAPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLVIDLVVASVLMAMGMMMLSPMIV 247

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 248 SLPFKLMLFVLVDGWNLILSTLAGSF 273


>gi|310816848|ref|YP_003964812.1| flagellar biosynthesis protein FliP [Ketogulonicigenium vulgare
           Y25]
 gi|308755583|gb|ADO43512.1| flagellar biosynthesis protein FliP [Ketogulonicigenium vulgare
           Y25]
          Length = 244

 Score =  179 bits (455), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 98/243 (40%), Positives = 148/243 (60%), Gaps = 9/243 (3%)

Query: 8   ALFLVTPELVFAKSSLH--DVMNIPADL---SISTWIVRTFGIFTILSIAPILLIMVTCF 62
           ALF V   L+   +     D+ ++  D    S++   V+   + T++S+ P L IM T F
Sbjct: 5   ALFSVALTLLAGAAGAQGVDIQSLGLDFGEGSVAGRSVQLLVMVTLISLVPALAIMFTSF 64

Query: 63  PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122
           P  + V SILR G+G    PPN++I++LALF+T+YVM+P  D +   GI PL+ +++   
Sbjct: 65  PFMVTVLSILRQGLGTQQSPPNMLIVTLALFLTWYVMAPVFDEAWANGIAPLLEDRLPVD 124

Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182
            A++    PF  FM       D + +  MA        +   D      L+PSF++SEL 
Sbjct: 125 AALRAAMAPFQTFMSGRV---DPTTYQTMASLRPDTVGVAVTDA-PLSTLVPSFLLSELS 180

Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
           R+F+IGFLI LPFLIID++VA ++M+MGMMM+PP  ++LPFK+ FFV+ DGWSLL  +LV
Sbjct: 181 RAFQIGFLIFLPFLIIDLVVAAVLMSMGMMMVPPAVVALPFKLAFFVVADGWSLLASSLV 240

Query: 243 KSF 245
           +++
Sbjct: 241 RNY 243


>gi|239815267|ref|YP_002944177.1| flagellar biosynthetic protein FliP [Variovorax paradoxus S110]
 gi|239801844|gb|ACS18911.1| flagellar biosynthetic protein FliP [Variovorax paradoxus S110]
          Length = 326

 Score =  179 bits (455), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 90/200 (45%), Positives = 135/200 (67%), Gaps = 4/200 (2%)

Query: 46  FTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDR 105
            T+L+I P LL+ +T F R I+V S+LR  +GM   PPN V+I LALF+T + MSP L +
Sbjct: 130 LTVLAILPALLVCLTSFLRIIVVLSMLRHAIGMNETPPNTVLIGLALFLTLFTMSPVLQK 189

Query: 106 SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165
             +   +P M  +++      +   P   FM   TRE DL+L ++++ +    +     +
Sbjct: 190 VNQDAFEPFMAGKLSMQDGYGKGIAPLREFMVRQTREADLALMVELSKAPTPKS----ME 245

Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225
            I    LIPSFM+SELR +F+IGF+I LPFL+ID+IV++I+MA+GMMM+PPT+I+LP K+
Sbjct: 246 DISNVQLIPSFMLSELRAAFQIGFVIFLPFLLIDLIVSSILMALGMMMMPPTTIALPLKI 305

Query: 226 IFFVLIDGWSLLVENLVKSF 245
           + F+L+DGWSL+++ LV SF
Sbjct: 306 LMFILVDGWSLVLKALVGSF 325


>gi|332140592|ref|YP_004426330.1| flagellar biosynthesis protein FliP [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327550614|gb|AEA97332.1| flagellar biosynthesis protein FliP [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 251

 Score =  179 bits (455), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 88/209 (42%), Positives = 136/209 (65%), Gaps = 3/209 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           T  ++   I T LS+ P  ++M+T F R I+V SILR  +G+   P N ++I ++LF++ 
Sbjct: 42  TMTLQALFIMTALSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSM 101

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           ++M+P  +   E  +QP +N Q+T   A+++   P   FM + TR KDL  F+ +A    
Sbjct: 102 FIMAPVFEEVNERALQPYLNEQLTSLDALEQAKGPMRAFMLSQTRVKDLETFVRIAGDEG 161

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
           +  D    D +   ILIP+F+ SEL+ +F+IGF++ +PFLIID++VA+I+MAMGMMML P
Sbjct: 162 KYAD---TDEVPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVASILMAMGMMMLSP 218

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             +SLPFK++ FVL+DGW+L+   L  SF
Sbjct: 219 MIVSLPFKLMLFVLVDGWNLIFGTLATSF 247


>gi|308048762|ref|YP_003912328.1| flagellar biosynthetic protein FliP [Ferrimonas balearica DSM 9799]
 gi|307630952|gb|ADN75254.1| flagellar biosynthetic protein FliP [Ferrimonas balearica DSM 9799]
          Length = 251

 Score =  179 bits (455), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 85/206 (41%), Positives = 139/206 (67%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++  G+ T+L+  P ++I++T F R I+V +ILR  +G+   P N V++ +ALF++ ++M
Sbjct: 45  LQILGLMTLLTFLPAMVILMTSFTRIIVVLAILRQALGLQQTPSNQVLLGMALFLSLFIM 104

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +P LDR  E  + P M  QI    A++R   P   FM + TR  D++ F++++      T
Sbjct: 105 TPVLDRVYEDALVPYMGEQIGALEAMERAKAPVKDFMLSQTRITDINTFVEISG----RT 160

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           DI   D +   +LIP+F+ SEL+ +F+IGF++ +PFL+ID++VA+++MAMGMMML P  +
Sbjct: 161 DIASVDEVPMTVLIPAFVTSELKTAFQIGFMLFVPFLVIDLVVASVLMAMGMMMLSPMIV 220

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 221 SLPFKIMLFVLVDGWNLVMGTLATSF 246


>gi|284041537|ref|YP_003391877.1| flagellar biosynthetic protein FliP [Conexibacter woesei DSM 14684]
 gi|283945758|gb|ADB48502.1| flagellar biosynthetic protein FliP [Conexibacter woesei DSM 14684]
          Length = 213

 Score =  179 bits (454), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 92/202 (45%), Positives = 137/202 (67%), Gaps = 6/202 (2%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
           G FT++   P  L  +T F R +IV   +RT +G  + PPN V++ +ALF+T +VM+PT 
Sbjct: 17  GAFTLI---PAGLFCLTGFTRILIVLGFIRTAIGTPTAPPNQVLVGIALFLTLFVMAPTF 73

Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163
            +  E    PL   +I    A++R  EP   FM   TR KDL+LF+ ++ +  R    T+
Sbjct: 74  TQIKETAWDPLEAGRINTAQAVRRAEEPLRQFMFEQTRTKDLALFVRLSRT--REQPRTR 131

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
            D I   +LIP+F++SEL+ +F+IGF+I LPFL+ID+IVA+ +M+MGM+MLPP  ISLPF
Sbjct: 132 AD-IPTTVLIPAFIVSELKTAFQIGFMIFLPFLVIDLIVASTLMSMGMIMLPPVFISLPF 190

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K++ FVL+DGW+L+ ++LV+SF
Sbjct: 191 KILLFVLVDGWALITDSLVRSF 212


>gi|167040314|ref|YP_001663299.1| flagellar biosynthesis protein FliP [Thermoanaerobacter sp. X514]
 gi|256750756|ref|ZP_05491641.1| flagellar biosynthetic protein FliP [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300914398|ref|ZP_07131714.1| flagellar biosynthetic protein FliP [Thermoanaerobacter sp. X561]
 gi|307724366|ref|YP_003904117.1| flagellar biosynthetic protein FliP [Thermoanaerobacter sp. X513]
 gi|166854554|gb|ABY92963.1| flagellar biosynthetic protein FliP [Thermoanaerobacter sp. X514]
 gi|256750339|gb|EEU63358.1| flagellar biosynthetic protein FliP [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300889333|gb|EFK84479.1| flagellar biosynthetic protein FliP [Thermoanaerobacter sp. X561]
 gi|307581427|gb|ADN54826.1| flagellar biosynthetic protein FliP [Thermoanaerobacter sp. X513]
          Length = 221

 Score =  179 bits (454), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 87/194 (44%), Positives = 133/194 (68%), Gaps = 5/194 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +LIM+T F R +IV S LR  +G+  +PPN V+I LALF+T ++M+P         I
Sbjct: 32  APSILIMMTSFTRIVIVLSFLRNALGLQQMPPNQVLIGLALFLTLFIMAPIGQDINNNAI 91

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           +P    +IT+  A Q   +P   FM   TR+ DL+LF+ +A  +  N +      +  R+
Sbjct: 92  KPYTEGKITQEEAYQNTIKPLKNFMLKQTRQNDLNLFVSLAKININNVE-----ELPMRV 146

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           +IP+F+ISEL+ +F+IGF++ +PFLIID++VA+++M+MGM MLPP  ISLPFKV+ F+L+
Sbjct: 147 VIPAFIISELKTAFQIGFILYIPFLIIDIVVASVLMSMGMFMLPPVLISLPFKVLLFILV 206

Query: 232 DGWSLLVENLVKSF 245
           DGW+L+V++L+  F
Sbjct: 207 DGWNLVVKSLILGF 220


>gi|7387672|sp|O85133|FLIP_RHOSH RecName: Full=Flagellar biosynthetic protein fliP
 gi|3435109|gb|AAC32322.1| flagellar protein FliP [Rhodobacter sphaeroides]
          Length = 301

 Score =  179 bits (454), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 90/206 (43%), Positives = 135/206 (65%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   + T L++ P L++ ++ F R IIV SILR  +G    PPN V+I+LALF+TF+VM
Sbjct: 97  LQILALMTALTVLPSLVLGMSAFTRIIIVLSILRQALGTQQTPPNQVLIALALFLTFFVM 156

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            PTL    E  + P ++ QI    AI+R       F+  NTR+ DL +F D+A +     
Sbjct: 157 QPTLGALYEQSLSPFLDGQIEAQPAIERGGAIMKDFLIANTRQNDLLMFSDLAGAG---- 212

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
              +   + +  L+P+FM SEL+ +F+IGFL+ LPFL+IDM++A+I+MA+GMMML P  +
Sbjct: 213 PYAEPTEVPFSTLLPAFMTSELKTAFQIGFLLFLPFLVIDMVIASILMALGMMMLSPMLV 272

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW+L V +L  S+
Sbjct: 273 SLPFKLLLFVLVDGWALTVGSLAASY 298


>gi|302387779|ref|YP_003823601.1| flagellar biosynthetic protein FliP [Clostridium saccharolyticum
           WM1]
 gi|302198407|gb|ADL05978.1| flagellar biosynthetic protein FliP [Clostridium saccharolyticum
           WM1]
          Length = 220

 Score =  179 bits (454), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 93/223 (41%), Positives = 145/223 (65%), Gaps = 9/223 (4%)

Query: 27  MNIPADLSISTWIVRTFGIF---TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPP 83
           MN  A ++I+   V T  +F   TI+S+ P +L+M+T F R +I+ S  R  MG+   PP
Sbjct: 1   MNTDALVNINGGRVPTLELFLILTIISLLPSILVMMTSFTRIVIILSFTRNAMGIQQTPP 60

Query: 84  NLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREK 143
           N+V++ +ALF+T ++M P +        QP +  +I++  A++R   P   FM   T + 
Sbjct: 61  NMVLVGIALFLTLFIMDPVIKDVNTNAYQPYIKEEISQGEALKRAQVPMKRFMLKQTEKT 120

Query: 144 DLSLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202
            L+LF DM+     NTD+ +N + +   ++IPSFM SEL+R+F  GF+I LPF+++D++V
Sbjct: 121 TLTLFTDMS-----NTDMPENIEDLPMTVVIPSFMTSELKRAFTAGFMIFLPFMLVDIVV 175

Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++ +M+MGM+MLPP  ISLPFK++ FV ++GW LL  NLVKSF
Sbjct: 176 SSTLMSMGMVMLPPAMISLPFKLLLFVTVNGWELLFTNLVKSF 218


>gi|313901464|ref|ZP_07834920.1| flagellar biosynthetic protein FliP [Thermaerobacter subterraneus
           DSM 13965]
 gi|313468270|gb|EFR63728.1| flagellar biosynthetic protein FliP [Thermaerobacter subterraneus
           DSM 13965]
          Length = 227

 Score =  179 bits (453), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 84/194 (43%), Positives = 131/194 (67%), Gaps = 4/194 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP LL+M+T F R ++  S LR  +G    PPN V++ LALF+T +VM+P   +  +   
Sbjct: 34  APALLVMMTGFTRIVVALSFLRGALGTQQAPPNQVLVGLALFLTVFVMAPVWQQVYQDAW 93

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
            P  + +I +  A+QR  EP   FM   TRE+DL+LF++++        +   D +   +
Sbjct: 94  IPYRDGRIGQVEALQRAQEPVREFMFRYTRERDLALFLELSGRG----PVASPDQVPTYV 149

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           LIP+F ISEL+ +F+IGF++ +PFL+IDM+VA+ +M+MGM+M+PP  +SLPFK++ FVL+
Sbjct: 150 LIPAFAISELKTAFQIGFILYVPFLVIDMVVASTLMSMGMLMVPPMLVSLPFKILLFVLV 209

Query: 232 DGWSLLVENLVKSF 245
           DGW+L+V +L+ SF
Sbjct: 210 DGWNLVVRSLLASF 223


>gi|264676604|ref|YP_003276510.1| flagellar biosynthetic protein FliP [Comamonas testosteroni CNB-2]
 gi|262207116|gb|ACY31214.1| flagellar biosynthetic protein FliP [Comamonas testosteroni CNB-2]
          Length = 249

 Score =  179 bits (453), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 87/206 (42%), Positives = 137/206 (66%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++T   FT LS  P +L+++T F R +IV S+LR  +G  S PPN V+I L+LF+T +VM
Sbjct: 46  IQTLLFFTALSFLPAILLLMTGFTRIVIVLSLLRQALGTQSAPPNQVVIGLSLFLTMFVM 105

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            PTLD+  +    P   N I+   A+++   P   FM   TR+ D +LF  +A     + 
Sbjct: 106 GPTLDKVYQDAYLPYTQNSISFEQAMEKAEAPMRGFMLKQTRQSDFALFKRLAK---LDA 162

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           ++T  +    R+L+P+F+ SEL+ +F+IGF+I +PFL+IDM+V++I+M++GMMML P  +
Sbjct: 163 NVTA-ETAPLRVLVPAFVTSELKTAFQIGFMIFIPFLVIDMVVSSILMSLGMMMLSPVLV 221

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           +LPFK++ FVL DGW+L++ +L  SF
Sbjct: 222 ALPFKLMLFVLADGWNLIIGSLAASF 247


>gi|261821163|ref|YP_003259269.1| flagellar biosynthesis protein FliP [Pectobacterium wasabiae
           WPP163]
 gi|261605176|gb|ACX87662.1| flagellar biosynthetic protein FliP [Pectobacterium wasabiae
           WPP163]
          Length = 258

 Score =  179 bits (453), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 100/227 (44%), Positives = 147/227 (64%), Gaps = 6/227 (2%)

Query: 21  SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           + L  ++  P      +W   V+T    T L+  P  L+M+T F R IIV S+LR  +G 
Sbjct: 34  AQLPGIVTQPLPNGGQSWTLPVQTLVFLTSLTFIPAALLMMTSFTRIIIVLSLLRNALGT 93

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
            + PPN V++ L LF+TF+VMSP L+R  E    P   +QI+   AI+R AEP   FM  
Sbjct: 94  PTAPPNQVLLGLTLFLTFFVMSPVLNRVYEEAYLPFSQDQISMEVAIERGAEPVREFMLR 153

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
            TRE DL+LF  +A       +I   + +  R+L+P+F+ SEL+ +F+IGF + +PFLII
Sbjct: 154 QTRETDLALFTRLAEIP----EIQGPEAVPMRVLLPAFVTSELKTAFQIGFTVFIPFLII 209

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           D++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 210 DLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 256


>gi|299531251|ref|ZP_07044661.1| flagellar biosynthesis protein FliP [Comamonas testosteroni S44]
 gi|298720658|gb|EFI61605.1| flagellar biosynthesis protein FliP [Comamonas testosteroni S44]
          Length = 249

 Score =  179 bits (453), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 87/206 (42%), Positives = 137/206 (66%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++T   FT LS  P +L+++T F R +IV S+LR  +G  S PPN V+I L+LF+T +VM
Sbjct: 46  IQTLLFFTALSFLPAILLLMTGFTRIVIVLSLLRQALGTQSAPPNQVVIGLSLFLTMFVM 105

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            PTLD+  +    P   N I+   A+++   P   FM   TR+ D +LF  +A     + 
Sbjct: 106 GPTLDKVYQDAYLPYTQNSISFEQAMEKAEAPMRGFMLKQTRQSDFALFKRLAK---LDA 162

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           ++T  +    R+L+P+F+ SEL+ +F+IGF+I +PFL+IDM+V++I+M++GMMML P  +
Sbjct: 163 NVTA-ETAPLRVLVPAFVTSELKTAFQIGFMIFIPFLVIDMVVSSILMSLGMMMLSPVLV 221

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           +LPFK++ FVL DGW+L++ +L  SF
Sbjct: 222 ALPFKLMLFVLADGWNLIIGSLAASF 247


>gi|126462466|ref|YP_001043580.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides ATCC
           17029]
 gi|126104130|gb|ABN76808.1| flagellar biosynthetic protein FliP [Rhodobacter sphaeroides ATCC
           17029]
          Length = 301

 Score =  178 bits (452), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 89/203 (43%), Positives = 133/203 (65%), Gaps = 4/203 (1%)

Query: 43  FGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT 102
             + T L++ P L++ ++ F R IIV SILR  +G    PPN V+I+LALF+TF+VM PT
Sbjct: 100 LALMTALTVLPSLVLGMSAFTRIIIVLSILRQALGTQQTPPNQVLIALALFLTFFVMQPT 159

Query: 103 LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT 162
           L    E  + P ++ QI    AI+R       F+  NTR+ DL +F D+A +        
Sbjct: 160 LGALYEQSLSPFLDGQIEAQPAIERGGAIMKDFLIANTRQNDLLMFSDLAGAG----PYA 215

Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
           +   + +  L+P+FM SEL+ +F+IGFL+ LPFL+IDM++A+I+MA+GMMML P  +SLP
Sbjct: 216 EPTEVPFSTLLPAFMTSELKTAFQIGFLLFLPFLVIDMVIASILMALGMMMLSPMLVSLP 275

Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245
           FK++ FVL+DGW+L V +L  ++
Sbjct: 276 FKLLLFVLVDGWALTVGSLAATY 298


>gi|224370774|ref|YP_002604938.1| FliP [Desulfobacterium autotrophicum HRM2]
 gi|223693491|gb|ACN16774.1| FliP [Desulfobacterium autotrophicum HRM2]
          Length = 258

 Score =  178 bits (452), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 92/216 (42%), Positives = 141/216 (65%), Gaps = 7/216 (3%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P D+++   ++    + TIL++AP +LI++T F R I+VF  LR  +G  S PPN V++ 
Sbjct: 48  PEDVAV---VLEIIALLTILALAPAILILMTPFTRIIVVFHFLRQAIGTQSSPPNQVVVG 104

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           LALF+TF+++ P      +  + P +  QI    A      P   F+  NTRE D++LF+
Sbjct: 105 LALFLTFFIIKPVALDVYQNALNPYLERQIDYNEAFTAAQVPIRNFLLVNTREADIALFV 164

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
             A  +  +T     + +   +LIP+++ISEL+ +F IGF+I +PFL+IDM+VA++++AM
Sbjct: 165 KGAGVAKPDT----REDVSLMLLIPAYVISELKTAFIIGFVIYVPFLVIDMVVASVLLAM 220

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMMLPP  ISLPFK++ FVL+DGW LL  +L+KSF
Sbjct: 221 GMMMLPPVMISLPFKLMLFVLVDGWHLLTGSLLKSF 256


>gi|221635440|ref|YP_002523316.1| flagellar biosynthetic protein FliP [Thermomicrobium roseum DSM
           5159]
 gi|221158046|gb|ACM07164.1| flagellar biosynthetic protein FliP [Thermomicrobium roseum DSM
           5159]
          Length = 271

 Score =  178 bits (452), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 86/201 (42%), Positives = 140/201 (69%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T++S+ P +LI++T F R +IV S +R+ +G+  +PPN V+I LALF+T +VM+PT  
Sbjct: 72  LLTLVSLLPTILIVMTSFTRIVIVLSFVRSAIGVPQLPPNQVLIGLALFLTVFVMAPTWQ 131

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
                 +QP +  +I + TA++R  +P   FM   TRE+D++LFM + +     T     
Sbjct: 132 AVNRDALQPYLRGEINQRTALERGLQPLRTFMFRQTRERDIALFMSLGNLPRPRTP---- 187

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           + +   +L+P+F++SEL+ +F +GF++ +PFL+ID+IV++ +MAMGM+M+PP  ISLPFK
Sbjct: 188 EDVPTWVLVPAFILSELKTAFTMGFVLFIPFLVIDLIVSSTLMAMGMIMVPPVVISLPFK 247

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FV++DGW LLV +LV SF
Sbjct: 248 LLLFVMVDGWDLLVRSLVVSF 268


>gi|117926839|ref|YP_867456.1| flagellar biosynthesis protein FliP [Magnetococcus sp. MC-1]
 gi|117610595|gb|ABK46050.1| flagellar biosynthetic protein FliP [Magnetococcus sp. MC-1]
          Length = 260

 Score =  178 bits (452), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 100/216 (46%), Positives = 142/216 (65%), Gaps = 7/216 (3%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P  +SI+   ++     T+ S+AP +L+MVT F R I+V S +R  MG+   PPN V+I+
Sbjct: 51  PEQVSIA---LQILAFMTLFSLAPGILVMVTSFTRVIVVMSFVRQAMGLQGQPPNQVLIA 107

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           LALF+T +VM P +D+  +  + P +N QI    A      P   FM   TRE DL LFM
Sbjct: 108 LALFVTMFVMGPVMDKVWDTALNPYLNKQIGGEQAWDNAVIPVKDFMLRQTRESDLGLFM 167

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
            +A        + K D    R++IP+FM+SEL+ +F+IGF++ LPFLI+DM+VA++VM+M
Sbjct: 168 RLAGMEQ----VEKRDEAPLRLVIPAFMVSELKTAFQIGFMVYLPFLIVDMVVASVVMSM 223

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMMLPP  IS+P K+I FVL+DGW L+V +LV+SF
Sbjct: 224 GMMMLPPLVISMPIKLILFVLVDGWVLVVGSLVQSF 259


>gi|325295421|ref|YP_004281935.1| flagellar biosynthetic protein FliP [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065869|gb|ADY73876.1| flagellar biosynthetic protein FliP [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 242

 Score =  178 bits (452), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 105/249 (42%), Positives = 165/249 (66%), Gaps = 12/249 (4%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMN--IP--ADLSISTWIVRTFGIFTILSIAPILL 56
           M +Y   A+  +   L++  +S  + +N  +P   +L I+   ++   + TILS+AP +L
Sbjct: 1   MKKYSQVAIVAIAINLLYISTSYGETVNDFLPQLGNLDIT---LKILFLITILSLAPAIL 57

Query: 57  IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
           I VT F R +I+ S+LR  +G    PPN VII+L+LF+T + M+PT  +  E+ IQP +N
Sbjct: 58  ITVTSFTRIVIILSLLRHALGTPQTPPNQVIIALSLFLTLFTMAPTFQQIDELAIQPYIN 117

Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
            +I++  AI+R +EP   FM  NTR++DL LF+D+     RN   +    I    LIP+F
Sbjct: 118 KKISDVEAIKRASEPIKNFMLRNTRKEDLKLFLDI-----RNEKPSSPQEISMLTLIPAF 172

Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
           M+SE+R + E+ F+I LPF++ID++VA+I+M+MGMMM+PP  +SLPFK+I FVL DGW L
Sbjct: 173 MVSEIRTALEVVFVIFLPFIVIDLLVASILMSMGMMMIPPMMLSLPFKLILFVLSDGWEL 232

Query: 237 LVENLVKSF 245
           L+++++ S+
Sbjct: 233 LIKSIILSY 241


>gi|77463634|ref|YP_353138.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides 2.4.1]
 gi|77388052|gb|ABA79237.1| Flagellar transport protein FliP [Rhodobacter sphaeroides 2.4.1]
          Length = 301

 Score =  178 bits (452), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 89/203 (43%), Positives = 133/203 (65%), Gaps = 4/203 (1%)

Query: 43  FGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT 102
             + T L++ P L++ ++ F R IIV SILR  +G    PPN V+I+LALF+TF+VM PT
Sbjct: 100 LALMTALTVLPSLVLGMSAFTRIIIVLSILRQALGTQQTPPNQVLIALALFLTFFVMQPT 159

Query: 103 LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT 162
           L    E  + P ++ QI    AI+R       F+  NTR+ DL +F D+A +        
Sbjct: 160 LGALYEQSLSPFLDGQIEAQPAIERGGAIMKDFLIANTRQNDLLMFSDLAGAG----PYA 215

Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
           +   + +  L+P+FM SEL+ +F+IGFL+ LPFL+IDM++A+I+MA+GMMML P  +SLP
Sbjct: 216 EPTEVPFSTLLPAFMTSELKTAFQIGFLLFLPFLVIDMVIASILMALGMMMLSPMLVSLP 275

Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245
           FK++ FVL+DGW+L V +L  ++
Sbjct: 276 FKLLLFVLVDGWALTVGSLAATY 298


>gi|125973002|ref|YP_001036912.1| flagellar biosynthesis protein FliP [Clostridium thermocellum ATCC
           27405]
 gi|256004799|ref|ZP_05429774.1| flagellar biosynthetic protein FliP [Clostridium thermocellum DSM
           2360]
 gi|281417213|ref|ZP_06248233.1| flagellar biosynthetic protein FliP [Clostridium thermocellum JW20]
 gi|125713227|gb|ABN51719.1| flagellar biosynthetic protein FliP [Clostridium thermocellum ATCC
           27405]
 gi|255991249|gb|EEU01356.1| flagellar biosynthetic protein FliP [Clostridium thermocellum DSM
           2360]
 gi|281408615|gb|EFB38873.1| flagellar biosynthetic protein FliP [Clostridium thermocellum JW20]
 gi|316940762|gb|ADU74796.1| flagellar biosynthetic protein FliP [Clostridium thermocellum DSM
           1313]
          Length = 260

 Score =  178 bits (452), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 96/219 (43%), Positives = 143/219 (65%), Gaps = 8/219 (3%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P D+S +  I+    + TILS+AP +LIM+T F R IIV S  R  +G   +PPN V+I 
Sbjct: 47  PQDVSTTIQIIV---LLTILSLAPSILIMMTSFVRIIIVLSFFRNAIGTQQMPPNQVLIG 103

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           LALF+T ++M P L    E   +P  N +IT+  A++R ++    FM   T + DL LF+
Sbjct: 104 LALFLTLFIMRPVLTEINETAFKPYTNQEITQEVALERSSDIIKRFMLKQTSKNDLGLFV 163

Query: 150 DMAHSSHRNTDITKND--HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
            +   S   T I + D   +   I+IP+F+ISEL  +F+IGFLI +PFL+IDM+V++ +M
Sbjct: 164 SL---SGMETPIKEEDIPKLPLTIVIPAFIISELTIAFKIGFLIYIPFLVIDMVVSSTLM 220

Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +MGMMMLPP  ISLPFK++ F+++ GW+L+ + +V SF+
Sbjct: 221 SMGMMMLPPVMISLPFKILLFIMVGGWNLMTQMIVNSFV 259


>gi|209695730|ref|YP_002263660.1| flagellar biosynthesis protein FliP [Aliivibrio salmonicida
           LFI1238]
 gi|208009683|emb|CAQ79982.1| polar flagellar assembly protein FliP [Aliivibrio salmonicida
           LFI1238]
          Length = 289

 Score =  178 bits (451), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 86/206 (41%), Positives = 135/206 (65%), Gaps = 5/206 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++  G+ T+L   P ++I++T F R ++V SILR  MG+   P N VII +A+F+TF++M
Sbjct: 87  LQILGLMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIAMFLTFFIM 146

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +P  D+  E  IQP +  +IT   A      P   FM   TR KDL  F++M+       
Sbjct: 147 APVFDKVNETAIQPYIGEEITAREAFDAAQIPMKEFMLAQTRVKDLETFVNMS-----GV 201

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           ++   + +   ++IP+F+ SEL+ +F++GF++ LPFLIID++VA+++MAMGMMML P  +
Sbjct: 202 EVENPEDVPITVVIPAFITSELKTAFQMGFMLFLPFLIIDLVVASVLMAMGMMMLSPMIV 261

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 262 SLPFKLMLFVLVDGWNLILSTLAGSF 287


>gi|317151987|ref|YP_004120035.1| flagellar biosynthetic protein FliP [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316942238|gb|ADU61289.1| flagellar biosynthetic protein FliP [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 256

 Score =  178 bits (451), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 102/247 (41%), Positives = 146/247 (59%), Gaps = 11/247 (4%)

Query: 5   CFFALFLVTPELVFAKSSL--HDVMNIPADLS----ISTWIVRTFGIFTILSIAPILLIM 58
           C F    + P L  A+  +     M + A  +    +ST +   F + T+LS+AP +++ 
Sbjct: 14  CLFGALALFPALSLAQDPVIPKLTMELAAGQAEPGEVSTLLEILF-LLTVLSMAPAIMLT 72

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIVF  LR  MG   +PPN ++  LA+FMT  +M P         +QP +  +
Sbjct: 73  MTSFTRIIIVFHFLRQAMGTQQMPPNQILAGLAIFMTVVIMMPVGKAINSTALQPYLAEE 132

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I    A++R   P   FM  +TREKDLS+F  +      N      D +   +L+ ++ I
Sbjct: 133 IRFDEALERAQVPIREFMFKHTREKDLSIFYSITKEERPN----NRDEVNTIMLVAAYTI 188

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+  F IGFLI +PFLI+DM+VA+I++AMGMMMLPP  ISLPFK++ FVLIDGW+LLV
Sbjct: 189 SELKTGFTIGFLIYIPFLILDMVVASILLAMGMMMLPPVMISLPFKILLFVLIDGWNLLV 248

Query: 239 ENLVKSF 245
            +LV +F
Sbjct: 249 GSLVNTF 255


>gi|152965632|ref|YP_001361416.1| flagellar biosynthesis protein FliP [Kineococcus radiotolerans
           SRS30216]
 gi|151360149|gb|ABS03152.1| flagellar biosynthetic protein FliP [Kineococcus radiotolerans
           SRS30216]
          Length = 287

 Score =  178 bits (451), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 84/200 (42%), Positives = 132/200 (66%), Gaps = 4/200 (2%)

Query: 46  FTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDR 105
            TILS+AP LL++ TCF + +IV  + R  +G+   PPN V+  LALF+T +VM+PT   
Sbjct: 90  LTILSVAPALLLLTTCFTKILIVLGLTRNALGLQGTPPNQVLAGLALFLTMFVMAPTFGA 149

Query: 106 SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165
             +  +QP +  + T T A    ++P   FM   TR ++L+L   M  ++ R+   T+ +
Sbjct: 150 INDTAVQPYLKGEKTATVAFTDGSQPLKEFMLKQTRPEELAL---MTKAAKRDLPATR-E 205

Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225
                 L+P+F +SELR +F IGF+I +PFL+ID++V+  +M++GMMMLPP ++SLPFK+
Sbjct: 206 ETPLTTLVPAFALSELRSAFIIGFVIFIPFLVIDIVVSGALMSLGMMMLPPVTVSLPFKL 265

Query: 226 IFFVLIDGWSLLVENLVKSF 245
           + FV+IDGW L+++ LV S+
Sbjct: 266 LLFVMIDGWGLIIKALVSSY 285


>gi|32490799|ref|NP_871053.1| flagellar biosynthesis protein FliP [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166005|dbj|BAC24196.1| fliP [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 263

 Score =  178 bits (451), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 89/206 (43%), Positives = 138/206 (66%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T    T L+  P L+++++ F R IIV SILR  +G  + PPN ++I L+L +T ++M
Sbjct: 59  VQTLLFLTSLTFIPALILLMSSFTRIIIVLSILRNALGTPTAPPNQILIGLSLCLTIFIM 118

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP L++       P   N+I    AI    +P   FM + TREKDL+ +  ++ ++  N+
Sbjct: 119 SPVLEKIYYDSYLPFYQNKINLQKAIIYAEQPIKEFMISQTREKDLAFYSKISKTNEINS 178

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                  +  +ILIP+F+ SEL+ +F+IGF + +PFLIIDM+VA+I+MA+GMMMLPPT++
Sbjct: 179 P----KEVPIKILIPAFVTSELKTAFQIGFTLFIPFLIIDMVVASILMALGMMMLPPTTV 234

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FV+ DGW +L+ +LV+SF
Sbjct: 235 SLPFKLMLFVMADGWQILLGSLVQSF 260


>gi|303246798|ref|ZP_07333075.1| flagellar biosynthetic protein FliP [Desulfovibrio fructosovorans
           JJ]
 gi|302491815|gb|EFL51695.1| flagellar biosynthetic protein FliP [Desulfovibrio fructosovorans
           JJ]
          Length = 252

 Score =  178 bits (451), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 91/199 (45%), Positives = 134/199 (67%), Gaps = 4/199 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T+LS+AP  ++ VT F R IIVFS LR  MG+  VPP+ ++ SLA+F+T  +M PT    
Sbjct: 56  TVLSLAPAFVLTVTSFTRIIIVFSFLRQAMGVPQVPPSQILASLAIFLTCVIMYPTGKAI 115

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
            +  +QP +N QI  T A+++   P   F+  +TREKDLS+F  +     R  D      
Sbjct: 116 NDDALQPYLNEQIGFTEALKKAETPLREFLFKHTREKDLSVFYTVTKM-ERPKD---KAE 171

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
           +   +L   F+ISEL+ +F IGFLI +PFLI+DM++++I++AMGMMMLPP +I++PFK++
Sbjct: 172 VPTTMLAAGFIISELKTAFTIGFLIYIPFLILDMVISSILLAMGMMMLPPATIAMPFKLL 231

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FVL+DGW L+V ++V SF
Sbjct: 232 LFVLVDGWGLMVGSIVNSF 250


>gi|227112531|ref|ZP_03826187.1| flagellar biosynthesis protein FliP [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
 gi|227328348|ref|ZP_03832372.1| flagellar biosynthesis protein FliP [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 258

 Score =  177 bits (450), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 99/227 (43%), Positives = 148/227 (65%), Gaps = 6/227 (2%)

Query: 21  SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           + L  ++  P      +W   V+T  + T L+  P  L+M+T F R IIV S+LR  +G 
Sbjct: 34  AQLPGIVTQPLPNGGQSWTLSVQTLVLLTSLTFIPAALLMMTSFTRIIIVLSLLRNALGT 93

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
            + PPN V++ L LF+TF+VMSP L+R  +    P   +QI+   AI+R AEP   FM  
Sbjct: 94  PTAPPNQVLLGLTLFLTFFVMSPVLNRVYDEAYLPFSQDQISMEVAIERGAEPVREFMLR 153

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
            TRE DL+LF  +A       +I   + +  R+L+P+F+ SEL+ +F+IGF + +PFLII
Sbjct: 154 QTRETDLALFTRLAEIP----EIQGPEAVPMRVLLPAFVTSELKTAFQIGFTVFIPFLII 209

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           D++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 210 DLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 256


>gi|239628946|ref|ZP_04671977.1| flagellar biosynthesis protein FliP [Clostridiales bacterium
           1_7_47_FAA]
 gi|239519092|gb|EEQ58958.1| flagellar biosynthesis protein FliP [Clostridiales bacterium
           1_7_47FAA]
          Length = 255

 Score =  177 bits (450), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 86/203 (42%), Positives = 133/203 (65%), Gaps = 2/203 (0%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           +F  L++ P L+IM+T F R +IV S LR  +G    PPN +++ LALF+T ++M+P   
Sbjct: 52  LFLFLAVVPSLIIMMTSFTRIVIVLSFLRNALGTQQSPPNQILVGLALFLTLFIMAPVFT 111

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
                  QP  +  IT   A  R  EP   FM   T +K L LF+ ++ +   +T     
Sbjct: 112 SVNVQAYQPYKSGTITREEAFDRAQEPMKEFMLKQTEKKSLDLFLSISKTDPPDTSKGPE 171

Query: 165 DHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
            ++E  +  ++PSF++SEL ++F +GFLI +PFLIID++V++ +M+MGM+MLPPT I+LP
Sbjct: 172 GYMELGLTTIVPSFILSELNKAFTMGFLIFIPFLIIDLVVSSTLMSMGMVMLPPTMIALP 231

Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245
           FK++ FVL+DGWSL+++ LV+SF
Sbjct: 232 FKIMMFVLVDGWSLVIKTLVQSF 254


>gi|462610|sp|P34200|FLIP_PECCC RecName: Full=Flagellar biosynthetic protein fliP; AltName:
           Full=Flagellar biosynthetic protein mopC
 gi|296055|emb|CAA51476.1| mopC [Pectobacterium carotovorum]
          Length = 258

 Score =  177 bits (450), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 99/227 (43%), Positives = 148/227 (65%), Gaps = 6/227 (2%)

Query: 21  SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           + L  ++  P      +W   V+T  + T L+  P  L+M+T F R IIV S+LR  +G 
Sbjct: 34  AQLPGIVTQPLPNGGQSWTLSVQTLVLLTSLTFLPAALLMMTSFTRIIIVLSLLRNALGT 93

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
            + PPN V++ L LF+TF+VMSP L+R  +    P   +QI+   AI+R AEP   FM  
Sbjct: 94  PTAPPNQVLLGLTLFLTFFVMSPVLNRVYDEAYLPFSQDQISMEVAIERGAEPVREFMLR 153

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
            TRE DL+LF  +A       +I   + +  R+L+P+F+ SEL+ +F+IGF + +PFLII
Sbjct: 154 QTRETDLALFTRLAEIP----EIQGPEAVPMRVLLPAFVTSELKTAFQIGFTVFIPFLII 209

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           D++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 210 DLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 256


>gi|121533746|ref|ZP_01665573.1| flagellar biosynthetic protein FliP [Thermosinus carboxydivorans
           Nor1]
 gi|121307737|gb|EAX48652.1| flagellar biosynthetic protein FliP [Thermosinus carboxydivorans
           Nor1]
          Length = 253

 Score =  177 bits (450), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 98/216 (45%), Positives = 147/216 (68%), Gaps = 7/216 (3%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P D+++S  ++ T    T+LS+AP +LIM+T F R IIV S LR+ +     PPN V+I 
Sbjct: 44  PKDVALSLQVLFT---LTVLSLAPSILIMMTSFTRIIIVLSFLRSALATQQTPPNQVLIG 100

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           LALF+TFY MSP  D+  +  +QP +   I++ TA+    +P   FM   TRE DL+LF+
Sbjct: 101 LALFLTFYTMSPYWDQINQNALQPYLAGTISQDTAMSEAMKPLRQFMLKQTRENDLALFV 160

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
           +++     N+     + I    LIP+F+ISEL+ +F+IGFLI +PF++IDM+VA+ +M+M
Sbjct: 161 NLSEGPRPNSP----EDITTSTLIPAFIISELKTAFQIGFLIYIPFIVIDMVVASTLMSM 216

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMM+PP  ISLPFK++ F+L+DGW L++ +L+ SF
Sbjct: 217 GMMMVPPVMISLPFKLLLFILVDGWHLIIRSLITSF 252


>gi|289548901|ref|YP_003473889.1| flagellar biosynthetic protein FliP [Thermocrinis albus DSM 14484]
 gi|289182518|gb|ADC89762.1| flagellar biosynthetic protein FliP [Thermocrinis albus DSM 14484]
          Length = 236

 Score =  177 bits (450), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 88/194 (45%), Positives = 137/194 (70%), Gaps = 4/194 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +LIM T F R +IV S+LR  +G+ +VPPN VI+SLA+F+TF+VM PT D+  +  +
Sbjct: 46  APSILIMTTAFVRIVIVLSLLRQAIGVPTVPPNQVIVSLAMFLTFFVMKPTWDKINQQAL 105

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           QPL+N QIT+   ++R +     FM  NT+ + L  F+  A +  R  ++     +   +
Sbjct: 106 QPLLNKQITDVEFLERTSSIMKEFMLRNTKRETLQAFLK-ASTVQRGEEV---RDVPMHV 161

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           LIP+FM+SE+  +F+I FL+ LPFLI+DM+VA+I+++MG++M+PP  ISLPFK++ FVL 
Sbjct: 162 LIPAFMVSEISVAFQIVFLLYLPFLIVDMVVASILISMGVLMVPPQIISLPFKLMLFVLA 221

Query: 232 DGWSLLVENLVKSF 245
           +GW L++ +LV+S+
Sbjct: 222 NGWELVILSLVRSY 235


>gi|239997094|ref|ZP_04717618.1| flagellar biosynthesis protein FliP [Alteromonas macleodii ATCC
           27126]
          Length = 251

 Score =  177 bits (450), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 86/201 (42%), Positives = 133/201 (66%), Gaps = 3/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           I T LS+ P  ++M+T F R I+V SILR  +G+   P N ++I ++LF++ ++M+P  +
Sbjct: 50  IMTALSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPVFE 109

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              E  +QP +N Q+T   A+++   P   FM + TR KDL  F+ +A    +  D    
Sbjct: 110 EVNERALQPYLNEQLTSLDALEQAKGPMRAFMLSQTRVKDLETFVRIAGDEGKYAD---T 166

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           + +   ILIP+F+ SEL+ +F+IGF++ +PFLIID++VA+I+MAMGMMML P  +SLPFK
Sbjct: 167 NEVPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVASILMAMGMMMLSPMIVSLPFK 226

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW+L+   L  SF
Sbjct: 227 LMLFVLVDGWNLIFGTLATSF 247


>gi|300311365|ref|YP_003775457.1| flagellar biosynthetic protein FliP [Herbaspirillum seropedicae
           SmR1]
 gi|300074150|gb|ADJ63549.1| flagellar biosynthetic protein FliP precursor protein
           [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 96/221 (43%), Positives = 143/221 (64%), Gaps = 4/221 (1%)

Query: 25  DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
           + M  P   +  +  ++T  + T LS  P  L+M+TCF R +IV S+LR  +G  S PP 
Sbjct: 27  NSMPAPGGGTNYSLPIQTMLLLTSLSFLPAALLMMTCFTRIVIVLSLLRQALGTQSTPPT 86

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
            V++ L+LF+TF+VMSP  DR      QP   N+I    A+ + A+P   FM   TRE D
Sbjct: 87  QVLVGLSLFLTFFVMSPVFDRIYTDAYQPFAENKIQMMEALDKGAQPLKEFMLKQTRESD 146

Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
           L+L++ ++    R   +   + +  R+L+P+F+ SEL+ +F+IGF I LPFLIIDM+VA+
Sbjct: 147 LALYVKLS----RGPALQGPEDVPLRLLVPAFVTSELKTAFQIGFAIFLPFLIIDMVVAS 202

Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           I+M+MGMMM+ P  +SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 203 ILMSMGMMMMSPALVSLPFKLMLFVLVDGWQLLIGSLAQSF 243


>gi|50120649|ref|YP_049816.1| flagellar biosynthesis protein FliP [Pectobacterium atrosepticum
           SCRI1043]
 gi|49611175|emb|CAG74621.1| flagellar biosynthetic protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 258

 Score =  177 bits (449), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 99/227 (43%), Positives = 147/227 (64%), Gaps = 6/227 (2%)

Query: 21  SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           + L  ++  P      +W   V+T    T L+  P  L+M+T F R IIV S+LR  +G 
Sbjct: 34  AQLPGIVTQPLPNGGQSWTLSVQTLVFLTSLTFLPAALLMMTSFTRIIIVLSLLRNALGT 93

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
            + PPN V++ L LF+TF+VMSP L+R  +    P   +QI+   AI+R AEP   FM  
Sbjct: 94  PTAPPNQVLLGLTLFLTFFVMSPVLNRVYDEAYLPFSQDQISMEVAIERGAEPLREFMLR 153

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
            TRE DL+LF  +A       +I   + +  R+L+P+F+ SEL+ +F+IGF + +PFLII
Sbjct: 154 QTRETDLALFTRLAEIP----EIQGPEAVPMRVLLPAFVTSELKTAFQIGFTVFIPFLII 209

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           D++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 210 DLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 256


>gi|325288789|ref|YP_004264970.1| flagellar biosynthetic protein FliP [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324964190|gb|ADY54969.1| flagellar biosynthetic protein FliP [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 250

 Score =  177 bits (449), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 106/232 (45%), Positives = 151/232 (65%), Gaps = 6/232 (2%)

Query: 14  PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73
           P+ V A     D+ N P + + S   ++ F I T+LS+ P +L+++T F R I+V S +R
Sbjct: 24  PQGVRAAGINLDLGNTPVEQTSSA--IQIFLIMTVLSLVPAILVLMTSFTRIIVVLSFVR 81

Query: 74  TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133
             MG   +PPN VII LAL +TF+VM+PT  +     I+P + NQI+   A+ R   P  
Sbjct: 82  NAMGTQQLPPNQVIIGLALILTFFVMAPTFSQVNTNAIKPYIENQISREEALTRAEAPLR 141

Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
            FM   TREKDL+LF+ ++      T       I   +L+PSF+ISEL+ +F+IGF I +
Sbjct: 142 EFMIKQTREKDLALFVGLSQIPQPKT----YRDIPTYVLVPSFVISELKTAFQIGFAIFI 197

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           PF+IIDMIVA+ +M+MGMMMLPP  ISLPFK++ FV++DGW L+V++LV SF
Sbjct: 198 PFMIIDMIVASTLMSMGMMMLPPMMISLPFKILLFVIVDGWYLIVQSLVASF 249


>gi|332994111|gb|AEF04166.1| flagellar biosynthesis protein FliP [Alteromonas sp. SN2]
          Length = 252

 Score =  177 bits (449), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 86/201 (42%), Positives = 133/201 (66%), Gaps = 3/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           I T LS+ P  ++M+T F R I+V SILR  +G+   P N +++ ++LF++ ++M+P  +
Sbjct: 51  IMTALSLIPAFIMMMTSFTRIIVVLSILRQAIGLQQSPSNQILVGVSLFLSMFIMAPVFE 110

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              E  +QP ++ Q+T   AI++   P   FM + TR KDL  F+ +A    +  D    
Sbjct: 111 EINERALQPYLSEQMTSLDAIEQAKGPMRAFMLSQTRVKDLETFVRIAGDEGKYAD---T 167

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D +   ILIP+F+ SEL+ +F+IGF++ +PFLIID++VA+I+MAMGMMML P  +SLPFK
Sbjct: 168 DEVPLTILIPAFVTSELKTAFQIGFMLFIPFLIIDLVVASILMAMGMMMLSPMIVSLPFK 227

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW+L+   L  SF
Sbjct: 228 LMLFVLVDGWNLIFGTLATSF 248


>gi|283853451|ref|ZP_06370695.1| flagellar biosynthetic protein FliP [Desulfovibrio sp. FW1012B]
 gi|283571171|gb|EFC19187.1| flagellar biosynthetic protein FliP [Desulfovibrio sp. FW1012B]
          Length = 262

 Score =  177 bits (448), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 91/199 (45%), Positives = 134/199 (67%), Gaps = 4/199 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T+LS+AP  ++ VT F R IIVFS LR  MG+  VPP  ++ SLA+F+T  +M PT  + 
Sbjct: 66  TVLSLAPSFILTVTSFTRIIIVFSFLRQAMGVPQVPPTQILASLAIFLTCVIMYPTGKQI 125

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
            +  +QP +  +I  T A+++   P   F+  +TREKDLS+F  +     R  D      
Sbjct: 126 NDDALQPYLEERIGFTEALKKAEAPLREFLFKHTREKDLSVFYTVTKM-ERPKD---KAE 181

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
           +   +L   FMISEL+ +F IGFLI +PFLI+DM++++I++AMGMMMLPP +I++PFK++
Sbjct: 182 VPTMMLAAGFMISELKTAFTIGFLIYIPFLILDMVISSILLAMGMMMLPPATIAMPFKLL 241

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FVL+DGW+L+V +LV SF
Sbjct: 242 LFVLVDGWALMVGSLVNSF 260


>gi|94495439|ref|ZP_01302019.1| flagellar transport protein [Sphingomonas sp. SKA58]
 gi|94424827|gb|EAT09848.1| flagellar transport protein [Sphingomonas sp. SKA58]
          Length = 255

 Score =  177 bits (448), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 89/199 (44%), Positives = 131/199 (65%), Gaps = 4/199 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           ++L++ P L++M+T F R IIV S+LR  +G+   PPN V++ LALF++ +VM P +D  
Sbjct: 59  SLLTVLPSLVLMMTSFTRIIIVLSLLRQALGLQQTPPNQVLVGLALFLSLFVMRPAIDTI 118

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
                 P    QI+   A+ R A+    FM   TRE DL LF ++A +    T       
Sbjct: 119 NAQAFDPYGKGQISIEEAVGRSAKVLHGFMSKQTRESDLKLFANLAQAPAFRTPA----D 174

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
           I + IL+P+F+ SEL+ +F+IGF+I LPFLIID++VA+ +MA+GMMML PT IS+PFK++
Sbjct: 175 IPFSILLPAFVTSELKTAFQIGFMIFLPFLIIDLVVASTLMALGMMMLSPTIISMPFKLL 234

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FVL+DGW+L + +L  SF
Sbjct: 235 LFVLVDGWALTMGSLAGSF 253


>gi|88800467|ref|ZP_01116031.1| flagellar biosynthetic protein FliP [Reinekea sp. MED297]
 gi|88776797|gb|EAR08008.1| flagellar biosynthetic protein FliP [Reinekea sp. MED297]
          Length = 221

 Score =  177 bits (448), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 89/206 (43%), Positives = 132/206 (64%), Gaps = 3/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   I T L+  P  L+M+T F R I+VF+ILR  +G+   P N ++I LALF+TF++M
Sbjct: 17  IQILAIMTALTFIPAALMMMTSFTRIIVVFAILRQAIGLQQTPSNQMLIGLALFLTFFIM 76

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +P  +      IQP +   I    A+ R  EP   FM   TRE DL LF+ +A       
Sbjct: 77  APVFNEVNANAIQPYIAEDILPLEAVDRAVEPMKRFMLAQTRESDLGLFIRLADEEGNFD 136

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           D      +   IL+P+F+ SEL+ +F+IGFL+ +PFLIID+++A+I+MAMGMMML P  I
Sbjct: 137 D---PQQVPLNILMPAFVTSELKTAFQIGFLLFIPFLIIDLVIASILMAMGMMMLSPIII 193

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW++++ ++  SF
Sbjct: 194 SLPFKIMLFVLVDGWAMVMGSVAASF 219


>gi|127512307|ref|YP_001093504.1| flagellar biosynthesis protein FliP [Shewanella loihica PV-4]
 gi|126637602|gb|ABO23245.1| flagellar biosynthetic protein FliP [Shewanella loihica PV-4]
          Length = 255

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 93/236 (39%), Positives = 144/236 (61%), Gaps = 7/236 (2%)

Query: 13  TPELVFAKSSLHDVMNIPADLSISTWIVRTFGIF---TILSIAPILLIMVTCFPRFIIVF 69
            P+L  A+  +   + +      ST    T  I    T LS  P ++IM+T F R I+V 
Sbjct: 22  APQLALAQDGILPAVTVTTGADGSTQYSVTMQILLLMTALSFLPAMVIMLTSFTRIIVVL 81

Query: 70  SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129
           SILR  +G+   P N V+I ++LFMTF++M+P  D+  +  ++P ++  +T   A  +  
Sbjct: 82  SILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDKIYDQAVKPYIDETMTIEQAYDKGK 141

Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189
           EP   FM   TR  DL  F+ +  S ++N  I   +     +LIP+F+ SEL+ +F+IGF
Sbjct: 142 EPLRAFMLAQTRLTDLETFVQI--SGYQN--IQSPEDAPMSVLIPAFITSELKTAFQIGF 197

Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++ +PFL++D++VA+I+MAMGMMML P  +SLPFK++ FVL+DGWSL++  L  SF
Sbjct: 198 MLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVMGTLANSF 253


>gi|289523556|ref|ZP_06440410.1| flagellar biosynthetic protein FliP [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289503248|gb|EFD24412.1| flagellar biosynthetic protein FliP [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 252

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 86/216 (39%), Positives = 143/216 (66%), Gaps = 7/216 (3%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P+D++++  I+    + TILS+AP +++MVT F R I+V   +R  +G+  +PPN V+++
Sbjct: 43  PSDVALTLQII---ALITILSLAPAIVLMVTSFTRIIVVLGFVRQSIGLQQLPPNQVLVT 99

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           LALF+TF+ MSP   +     I P M  +I    A  +   P   FM +  ++++LSL +
Sbjct: 100 LALFLTFFTMSPVWQKIYSESINPYMAGEIATQEAYAKAIGPIRDFMFSQVKDEELSLMV 159

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
            ++           +D +  R+LIP+FMI EL+++F++G LI +PF+++DMIVA+++++M
Sbjct: 160 SLSDLPQPQ----NHDDVPTRVLIPAFMIGELKKAFQMGILIFIPFIVVDMIVASVLLSM 215

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GM+MLPP  ISLPFKV+ FV+ DGW L++ ++V SF
Sbjct: 216 GMIMLPPMLISLPFKVLLFVVADGWDLVIYSVVSSF 251


>gi|332702322|ref|ZP_08422410.1| flagellar biosynthetic protein FliP [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552471|gb|EGJ49515.1| flagellar biosynthetic protein FliP [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 263

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 102/236 (43%), Positives = 146/236 (61%), Gaps = 9/236 (3%)

Query: 14  PELVFAKSSLHDVMNI----PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVF 69
           P L +A+   H  M+I    P    +S  +   F + T+LS+AP +++ +T F R IIVF
Sbjct: 31  PGLAWAQDIPHFSMSISGGQPEPEQVSLLLEIIF-LLTVLSLAPAIIMTMTSFTRIIIVF 89

Query: 70  SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129
             LR  +G   +PP+ ++ISLA+FMTF +M PT        +QP M  +I    A+    
Sbjct: 90  HFLRQALGTQQMPPSQILISLAIFMTFVIMMPTAMAINNTALQPYMEERIGFKEALDNAQ 149

Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189
           +P   FM  +TREKDLS+F  +A     +      + +   +L  +F+ISEL+  F IGF
Sbjct: 150 KPLREFMFKHTREKDLSVFYSIAKIERPD----NREQVPTMLLTAAFVISELKTGFIIGF 205

Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LI +PFLI+DM+VA+I++AMGMMMLPP  ISLPFKV+ FV++DGW+LL  +LV SF
Sbjct: 206 LIYIPFLILDMVVASILLAMGMMMLPPVMISLPFKVLLFVMVDGWNLLTASLVNSF 261


>gi|219670147|ref|YP_002460582.1| flagellar biosynthesis protein FliP [Desulfitobacterium hafniense
           DCB-2]
 gi|219540407|gb|ACL22146.1| flagellar biosynthetic protein FliP [Desulfitobacterium hafniense
           DCB-2]
          Length = 259

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 105/235 (44%), Positives = 155/235 (65%), Gaps = 6/235 (2%)

Query: 11  LVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
           LV  + V A     D     A+ + ST  ++   + T++SIAP +L+++T F R IIV S
Sbjct: 30  LVNTDSVLAAGLTLDFGTTTAEQTSST--LQILLLLTVISIAPAILVLMTSFTRTIIVLS 87

Query: 71  ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
            +R  +G   +PPN V+I L+LF+TF+VM+PT +      +QP M NQIT+  A+Q+   
Sbjct: 88  FVRNALGTQQLPPNQVLIGLSLFLTFFVMAPTWNEINTQALQPYMQNQITQAEALQQAEA 147

Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
           P   FM   TREKDL+LF+ +A      T       I   +LIP+F+ISEL+ +F++GF 
Sbjct: 148 PLRQFMFEQTREKDLTLFVGLARMEQPQT----YGDIPTYVLIPAFVISELKTAFQMGFA 203

Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           I +PF++IDM+VA+++M+MGMMMLPP  +SLPFK++ FVL+DGW L+V++LV SF
Sbjct: 204 IFIPFMVIDMLVASVLMSMGMMMLPPMMVSLPFKILLFVLVDGWHLVVQSLVTSF 258


>gi|319764505|ref|YP_004128442.1| flagellar biosynthetic protein flip [Alicycliphilus denitrificans
           BC]
 gi|317119066|gb|ADV01555.1| flagellar biosynthetic protein FliP [Alicycliphilus denitrificans
           BC]
          Length = 251

 Score =  176 bits (446), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 85/206 (41%), Positives = 132/206 (64%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++T   FT LS  P +L+M+T F R +IV S+LR  +G    PPN V++ L+LF+T +VM
Sbjct: 48  IQTLLFFTALSFLPAVLLMMTGFTRIVIVLSLLRQAIGTQQAPPNQVVVGLSLFLTLFVM 107

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            PTLD+  +    P   N ++   A+ +   P   FM   TR+ D +LF  +A      T
Sbjct: 108 GPTLDKVYQEAYVPYTTNALSFEQALAKAEAPMRGFMLKQTRQSDFTLFARLAKLDEGVT 167

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                +    R+L+P+F+ SEL+ +F+IGF++ +PFLIIDM+V++++M++GMMML P  +
Sbjct: 168 ----AETAPLRVLVPAFVTSELKTAFQIGFMVFIPFLIIDMVVSSVLMSLGMMMLSPVLV 223

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           +LPFK++ FVL DGW+LL+ +L  SF
Sbjct: 224 ALPFKLMLFVLADGWNLLIGSLAASF 249


>gi|255264563|ref|ZP_05343905.1| flagellar biosynthetic protein FliP [Thalassiobium sp. R2A62]
 gi|255106898|gb|EET49572.1| flagellar biosynthetic protein FliP [Thalassiobium sp. R2A62]
          Length = 243

 Score =  176 bits (446), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 96/234 (41%), Positives = 140/234 (59%), Gaps = 6/234 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           +IR+ F AL L +   V A+      ++   D S++   ++   + TILSI P L IM+T
Sbjct: 4   LIRFSFLALALFSATSVTAQ---EISLSFGDDASLAGRSIQLLALVTILSIVPGLAIMIT 60

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
           CFP  + V +ILR  +G+   PPN++I+SLALF+T++VM P    S  +GI PL   ++ 
Sbjct: 61  CFPFIVTVLAILRQAIGLQQSPPNMLIVSLALFLTYFVMEPVFIESWTLGIGPLSTGELE 120

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A+     PF  FM             D+   S  + DI         ++IPSF++SE
Sbjct: 121 IEPALANAISPFRDFMALRIDPNTFQTLTDIRPQSSTSEDIASA---PLSLMIPSFLLSE 177

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234
           + R+F++GFLI LPFLIID++VA I+M+MGMMM+PP  +SLPFK+ FFV+ DGW
Sbjct: 178 IERAFQVGFLIFLPFLIIDLVVAAILMSMGMMMVPPAIVSLPFKLAFFVIADGW 231


>gi|330826721|ref|YP_004390024.1| flagellar biosynthetic protein FliP [Alicycliphilus denitrificans
           K601]
 gi|329312093|gb|AEB86508.1| flagellar biosynthetic protein FliP [Alicycliphilus denitrificans
           K601]
          Length = 251

 Score =  176 bits (446), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 86/206 (41%), Positives = 132/206 (64%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++T   FT LS  P +L+M+T F R +IV S+LR  +G    PPN V++ L+LF+T +VM
Sbjct: 48  IQTLLFFTALSFLPAVLLMMTGFTRIVIVLSLLRQAIGTQQAPPNQVVVGLSLFLTLFVM 107

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            PTLD+  +    P   N ++   A+ +   P   FM   TR+ D +LF  +A      T
Sbjct: 108 GPTLDKVYQEAYVPYTTNALSFEQALAKAEAPMRGFMLKQTRQSDFALFARLAKLDEGVT 167

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
             T       R+L+P+F+ SEL+ +F+IGF++ +PFLIIDM+V++++M++GMMML P  +
Sbjct: 168 AETA----PLRVLVPAFVTSELKTAFQIGFMVFIPFLIIDMVVSSVLMSLGMMMLSPVLV 223

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           +LPFK++ FVL DGW+LL+ +L  SF
Sbjct: 224 ALPFKLMLFVLADGWNLLIGSLAASF 249


>gi|73532546|dbj|BAE19831.1| flagellar biosynthesis protein [Edwardsiella tarda]
          Length = 231

 Score =  176 bits (446), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 89/194 (45%), Positives = 132/194 (68%), Gaps = 5/194 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T    T LS  P  L+++T F R IIV  +LRT  G  S PPN V++ LALF+TF++M
Sbjct: 43  VQTLVFLTSLSFLPAALLLMTSFTRIIIVLGLLRTP-GHPSAPPNQVLLGLALFLTFFIM 101

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP LD+  +   QP    +I+  TA+ R A+P   FM   TRE DL+LF  +A    +  
Sbjct: 102 SPVLDKIYQDAYQPFSEQKISMETALDRGAKPLRAFMLRQTRETDLALFSRLA----KQP 157

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           ++   + +  RIL+P+++ SEL+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP +I
Sbjct: 158 EMQGPEDVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATI 217

Query: 220 SLPFKVIFFVLIDG 233
           SLPFK++ FVL+DG
Sbjct: 218 SLPFKLMLFVLVDG 231


>gi|291617858|ref|YP_003520600.1| FliP [Pantoea ananatis LMG 20103]
 gi|291152888|gb|ADD77472.1| FliP [Pantoea ananatis LMG 20103]
 gi|327394275|dbj|BAK11697.1| flagellar biosynthetic protein FliP precursor [Pantoea ananatis
           AJ13355]
          Length = 244

 Score =  176 bits (445), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 96/229 (41%), Positives = 151/229 (65%), Gaps = 6/229 (2%)

Query: 19  AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
           A + L  +++ P      +W   V+T    T L+  P +L+M+T F R IIVF +LR  +
Sbjct: 18  AHAQLPGLVSQPLANGGQSWSLPVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNAL 77

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G  S PPN V++ L LF+TF++M+PT D+  +    P   ++I+   AI + A+P   FM
Sbjct: 78  GTPSAPPNQVLLGLTLFLTFFIMAPTFDKIYQDAYLPFSQDKISMDVAIDKGAQPLREFM 137

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
              TRE DL+LF  +A+++     I   + +  RIL+P+++ SEL+ +F+IGF + +PFL
Sbjct: 138 LRQTREADLALFARLANTA----PIAGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFL 193

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IID++VA+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 194 IIDLVVASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 242


>gi|317133473|ref|YP_004092787.1| flagellar biosynthetic protein FliP [Ethanoligenens harbinense
           YUAN-3]
 gi|315471452|gb|ADU28056.1| flagellar biosynthetic protein FliP [Ethanoligenens harbinense
           YUAN-3]
          Length = 267

 Score =  176 bits (445), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 92/193 (47%), Positives = 124/193 (64%), Gaps = 4/193 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +LIM+T F R II  S LR  +G    PPN V++ +ALF++ ++MSP +++      Q
Sbjct: 78  PSILIMMTSFTRIIIFLSFLRNALGTQQTPPNQVLVGIALFLSLFIMSPVINQINTTAYQ 137

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           PL+N QIT   A     +P   FM   T    L  F+ MA +      +   D+I   +L
Sbjct: 138 PLVNGQITTEQAEVNAMKPLRQFMFKQTENASLKTFLSMAGTP----TVKSLDNIPNSVL 193

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           IP+F+ISEL+R+F +GFLI LPFLIID+IV T +M+MGMMMLPPT ISLP K+  FVL+D
Sbjct: 194 IPAFVISELKRAFMMGFLIYLPFLIIDVIVGTTLMSMGMMMLPPTMISLPLKLALFVLVD 253

Query: 233 GWSLLVENLVKSF 245
           GW L V++LV SF
Sbjct: 254 GWGLTVQSLVYSF 266


>gi|226313054|ref|YP_002772948.1| flagellar biosynthetic protein FliP precursor [Brevibacillus brevis
           NBRC 100599]
 gi|226096002|dbj|BAH44444.1| flagellar biosynthetic protein FliP precursor [Brevibacillus brevis
           NBRC 100599]
          Length = 253

 Score =  176 bits (445), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 94/201 (46%), Positives = 139/201 (69%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           I T+LS+AP +L+++T F R IIV S +R  +    +PPN V+I+LALFMTF++M+PTL 
Sbjct: 57  ILTVLSVAPAILLLMTSFARIIIVLSFVRNALATQQMPPNQVLIALALFMTFFIMAPTLG 116

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +  E  +QP M  ++T+  A      PF  FM   TREKDL+LF++   +    T     
Sbjct: 117 QVNETAVQPFMQGKLTQQQAFDAAVIPFKQFMAKQTREKDLALFLEYTKAERPKT----I 172

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
             I    L+P++ ISEL+ +F+IGF+I +PFL+IDMI+++I+M MGMMMLPP  ISLPFK
Sbjct: 173 QDIPLNALVPAYAISELKTAFQIGFMIFIPFLVIDMIISSILMGMGMMMLPPVMISLPFK 232

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ F+++DGW L+V++L+ SF
Sbjct: 233 ILLFIMVDGWYLIVKSLLTSF 253


>gi|296135631|ref|YP_003642873.1| flagellar biosynthetic protein FliP [Thiomonas intermedia K12]
 gi|295795753|gb|ADG30543.1| flagellar biosynthetic protein FliP [Thiomonas intermedia K12]
          Length = 255

 Score =  176 bits (445), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 96/207 (46%), Positives = 146/207 (70%), Gaps = 4/207 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T    T L   P +L+M+T F R IIV S+L+  +G  +VPP+ VI+ L+LF+TF+VM
Sbjct: 52  VQTLLFMTALVFLPAMLLMMTAFTRIIIVLSLLKQALGTTTVPPSQVIVGLSLFLTFFVM 111

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP L++  ++ I+PLM+NQIT   A+Q  A P   FM   TR++DL+LF+ +  S H+  
Sbjct: 112 SPVLNQVNDVAIKPLMDNQITMQQALQTGAAPLRTFMLGQTRQEDLALFVKL--SGHKAL 169

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           D  K +     +LIP+F+ SEL+ +F+IGF+I +PFLIIDM+VA ++M+MGMMML P ++
Sbjct: 170 D--KPEDTPMTLLIPAFVTSELKTAFQIGFVIFIPFLIIDMVVAAVLMSMGMMMLSPVTV 227

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
           S P K++ FVL+ GW L++ +L++SF+
Sbjct: 228 SFPLKLMLFVLVGGWELVIGSLMQSFV 254


>gi|121997286|ref|YP_001002073.1| flagellar biosynthesis protein FliP [Halorhodospira halophila SL1]
 gi|121588691|gb|ABM61271.1| flagellar biosynthetic protein FliP [Halorhodospira halophila SL1]
          Length = 246

 Score =  176 bits (445), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 86/193 (44%), Positives = 128/193 (66%), Gaps = 4/193 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +++M+T F R I+V +ILR  +G  S P N V+I LALF+T +VM P  D   E  +Q
Sbjct: 56  PAMVLMMTAFTRIIVVLAILRQALGTASTPSNQVLIGLALFLTLFVMMPVFDEINETALQ 115

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P M  ++    A+++ +EP   FM   TRE D++LF+ +A       ++   D +   +L
Sbjct: 116 PYMAEEMGAEEALEQASEPMREFMIRQTREDDIALFLRIADYG----EVDSPDDVPMSVL 171

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           IP+FM SEL+ +F IGF++ LPFL+ID++VA+ +M+MGM+ML P  ISLPFK++ FVL+D
Sbjct: 172 IPAFMTSELKTAFIIGFVLYLPFLVIDLVVASTLMSMGMLMLSPMIISLPFKIMLFVLVD 231

Query: 233 GWSLLVENLVKSF 245
           GWSL++  L  SF
Sbjct: 232 GWSLIMGTLASSF 244


>gi|297617154|ref|YP_003702313.1| flagellar biosynthetic protein FliP [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144991|gb|ADI01748.1| flagellar biosynthetic protein FliP [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 259

 Score =  176 bits (445), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 97/206 (47%), Positives = 141/206 (68%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   + TILS+AP +LI++T F R I+V S +R+ +    +PPN +++ LALF+TF+VM
Sbjct: 57  LQILALLTILSLAPAILILLTSFTRIIVVLSFVRSALATQQMPPNQILVGLALFLTFFVM 116

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +PT     E  +QP    +IT+  A  R   P   FM   TREKDL+LF+ MA      T
Sbjct: 117 APTWKEVNEKALQPYFQGEITQDQAFTRGMAPLRTFMFKQTREKDLALFVKMAKIQRPRT 176

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                D   Y +LIP+F+ISEL+ +FEIGF+I +PFL+IDM+V++ +M+MGM+MLPP  I
Sbjct: 177 ---YGDVPNY-VLIPAFVISELKTAFEIGFIIFVPFLVIDMVVSSALMSMGMLMLPPMMI 232

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW+L+V +L+ SF
Sbjct: 233 SLPFKILLFVLVDGWNLVVNSLLMSF 258


>gi|229827384|ref|ZP_04453453.1| hypothetical protein GCWU000182_02772 [Abiotrophia defectiva ATCC
           49176]
 gi|229788322|gb|EEP24436.1| hypothetical protein GCWU000182_02772 [Abiotrophia defectiva ATCC
           49176]
          Length = 283

 Score =  175 bits (444), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 85/200 (42%), Positives = 136/200 (68%), Gaps = 4/200 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T+L +AP +LI++T F R I+V   +R+ +   + PPN V++ LALF+T+++M+P   + 
Sbjct: 87  TVLGLAPSILILLTSFTRIIVVLHFVRSALTTQTTPPNQVLVGLALFLTWFIMAPIFMQI 146

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
               ++PL + +I    A +   +P   FM   T  KD+ LF+D+A       ++   + 
Sbjct: 147 NTEALKPLTDGKINFEQAYEVGIKPLRTFMYKQTNTKDIRLFLDIAGID----EVKDMEE 202

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
           I   +LIP+F+ISELR +F IGF I +PFL+IDM+V++ +M+MGMMMLPPT+IS+PFK++
Sbjct: 203 IPTNVLIPAFIISELRAAFIIGFCIYIPFLVIDMVVSSTLMSMGMMMLPPTTISMPFKIL 262

Query: 227 FFVLIDGWSLLVENLVKSFI 246
            F+++DGW L++ NLVKSF+
Sbjct: 263 LFIMVDGWDLVIGNLVKSFV 282


>gi|255022051|ref|ZP_05294057.1| Flagellar biosynthesis pathway, component FliP [Acidithiobacillus
           caldus ATCC 51756]
 gi|254968537|gb|EET26093.1| Flagellar biosynthesis pathway, component FliP [Acidithiobacillus
           caldus ATCC 51756]
          Length = 231

 Score =  175 bits (444), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 90/206 (43%), Positives = 138/206 (66%), Gaps = 3/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T  + T+L+  P +++M+T F R IIV S+LR G+G+ ++PPN+V+I LALF+TF+VM
Sbjct: 25  VQTVILMTVLTFLPAIVLMMTGFTRIIIVLSLLRQGLGLSTMPPNIVLIGLALFLTFFVM 84

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            PT        + PL   +++ T A+    +P  +FMRNNT +  ++ F+ M     + T
Sbjct: 85  QPTWSSINHQALIPLEQGKVSVTRALAIAEKPLRIFMRNNTTKDSVAQFLRM--DGIKKT 142

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
             ++ D I  R+LIP+F +S+L   FE+GFL+ LPFLIID++VA ++MAMGMMM+ P +I
Sbjct: 143 LRSEKD-IPMRVLIPAFAVSQLESGFELGFLVYLPFLIIDLLVAAVLMAMGMMMVSPQTI 201

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           S+P K++ F L  GW L+   LV+SF
Sbjct: 202 SIPIKLLLFALGGGWLLVTGTLVRSF 227


>gi|288870652|ref|ZP_06114850.2| flagellar biosynthetic protein FliP [Clostridium hathewayi DSM
           13479]
 gi|288866388|gb|EFC98686.1| flagellar biosynthetic protein FliP [Clostridium hathewayi DSM
           13479]
          Length = 259

 Score =  175 bits (444), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 87/203 (42%), Positives = 130/203 (64%), Gaps = 2/203 (0%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           +F  L++ P LLIM+T F R +IV S LR  +G    PPN V+I LALF+T ++MSP   
Sbjct: 56  LFLFLAVVPSLLIMMTSFTRIVIVLSFLRNALGTQQSPPNQVMIGLALFLTLFIMSPVFA 115

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +      +P     IT   A  R  EP   FM   T +K L LF+ ++ +   +      
Sbjct: 116 KVNTQAYEPYKAGAITREEAFTRAQEPMKEFMLKQTEKKSLDLFLSISKTEVPDVSGGPE 175

Query: 165 DHIEYR--ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
            +++    +L+PSF++SEL ++F +GFLI +PFLIID++V++ +M+MGM+MLPPT I+LP
Sbjct: 176 GYMKLGLTVLVPSFILSELNKAFTMGFLIYIPFLIIDLVVSSTLMSMGMVMLPPTMIALP 235

Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245
           FK++ FVL+DGWSL+++ LV  F
Sbjct: 236 FKIMMFVLVDGWSLVIKTLVTGF 258


>gi|119775422|ref|YP_928162.1| flagellar biosynthesis protein FliP [Shewanella amazonensis SB2B]
 gi|119767922|gb|ABM00493.1| flagellar biosynthetic protein FliP [Shewanella amazonensis SB2B]
          Length = 249

 Score =  175 bits (444), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 86/201 (42%), Positives = 131/201 (65%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T LS  P ++IM+T F R I+  S+LR  +G+   P N V+I L+LFMTF++M+P  D
Sbjct: 51  LMTALSFLPAMVIMLTSFTRIIVTLSLLRQAIGLQQAPSNQVLIGLSLFMTFFIMAPVFD 110

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +  E G++P M   +    A +R  EP   FM +  R  DL  F+++A   +    I   
Sbjct: 111 KIYEQGVKPYMEETLPIDQAFERGKEPLKAFMLSQVRITDLETFVNIAGYDN----IKSP 166

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           +     ++IP+F+ SEL+ +F+IGF++ +PFL+ID++VA+I+MAMGMMML P  +SLPFK
Sbjct: 167 EEAPMTVIIPAFITSELKTAFQIGFMLFVPFLVIDLVVASILMAMGMMMLSPMIVSLPFK 226

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGWSL++  L  SF
Sbjct: 227 IMLFVLVDGWSLVMGTLANSF 247


>gi|254519408|ref|ZP_05131464.1| flagellar biosynthetic protein FliP [Clostridium sp. 7_2_43FAA]
 gi|226913157|gb|EEH98358.1| flagellar biosynthetic protein FliP [Clostridium sp. 7_2_43FAA]
          Length = 257

 Score =  175 bits (443), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 86/193 (44%), Positives = 133/193 (68%), Gaps = 3/193 (1%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P ++IM+T F R I+VFS L++ +G     PN ++I LALF+T ++M P          +
Sbjct: 66  PSIIIMMTSFTRIIVVFSFLKSALGAQQSIPNQILIGLALFLTIFIMQPVYSEINNNAFK 125

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P M N IT+  A++  ++P   FM   TR+KDL LF++   S     +IT+ D+I   ++
Sbjct: 126 PFMENTITQDEAMEAGSKPLREFMLKQTRQKDLELFIE--TSKLDKEEITR-DNIPLTVV 182

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           IP+F ISEL+ +F+IGFL+ LPFLIIDM+VA+++M+MGM M+PP  ++LPFK++ FV++D
Sbjct: 183 IPAFAISELKTAFQIGFLLFLPFLIIDMVVASVLMSMGMFMVPPVMVALPFKLLLFVMVD 242

Query: 233 GWSLLVENLVKSF 245
           GW L+V++L+ SF
Sbjct: 243 GWYLMVKSLIMSF 255


>gi|146277690|ref|YP_001167849.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555931|gb|ABP70544.1| flagellar biosynthetic protein FliP [Rhodobacter sphaeroides ATCC
           17025]
          Length = 246

 Score =  175 bits (443), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 86/206 (41%), Positives = 133/206 (64%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   + T L++ P L++ ++ F R IIV SILR  +G    PPN V+I+LALF+TF+VM
Sbjct: 42  LQILALMTALTVLPSLVLGMSAFTRIIIVLSILRQALGTQQTPPNQVLIALALFLTFFVM 101

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            PTL       + P ++ ++    AI+R       F+  NTR+ DL +F D+A +     
Sbjct: 102 QPTLGTLYAEALSPFLDGRLAAEPAIERGGAIMKEFLIANTRQNDLLMFSDLAGAGPYE- 160

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                  + +  L+P+FM SEL+ +F+IGFL+ LPFL+IDM++A+I+MA+GMMML P  +
Sbjct: 161 ---DPRDVPFSTLLPAFMTSELKTAFQIGFLLFLPFLVIDMVIASILMALGMMMLSPMLV 217

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW+L V +L  ++
Sbjct: 218 SLPFKLLLFVLVDGWALTVGSLAATY 243


>gi|157376188|ref|YP_001474788.1| flagellar biosynthesis protein FliP [Shewanella sediminis HAW-EB3]
 gi|157318562|gb|ABV37660.1| Triacylglycerol lipase [Shewanella sediminis HAW-EB3]
          Length = 248

 Score =  175 bits (443), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 95/245 (38%), Positives = 148/245 (60%), Gaps = 8/245 (3%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIF---TILSIAPILLIMVT 60
           +  F+L L++PE  F++  +   + +       T    T  I    T LS  P ++IM+T
Sbjct: 7   FIAFSLLLISPE-AFSQGGVLPAVTVTTGPQGETQYSVTMQILLLMTSLSFLPAMVIMLT 65

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R I+V SILR  +G+   P N V+I ++LF+TF++MSP  D+  +  ++P M   + 
Sbjct: 66  SFTRIIVVLSILRQAIGLQQAPSNQVLIGMSLFLTFFIMSPVFDKVYDDAVKPYMEESMG 125

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A  +  EP   FM   TR  DL  F+ +  S ++N  I   +     ++IPSF+ SE
Sbjct: 126 IEEAFNKGKEPIKTFMLAQTRVTDLDTFIQI--SGYQN--INSPEEAPMSVIIPSFITSE 181

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P  +SLPFK++ FVL+DGWSL++  
Sbjct: 182 LKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVMGT 241

Query: 241 LVKSF 245
           L  SF
Sbjct: 242 LANSF 246


>gi|307293814|ref|ZP_07573658.1| flagellar biosynthetic protein FliP [Sphingobium chlorophenolicum
           L-1]
 gi|306879965|gb|EFN11182.1| flagellar biosynthetic protein FliP [Sphingobium chlorophenolicum
           L-1]
          Length = 273

 Score =  174 bits (442), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 88/199 (44%), Positives = 131/199 (65%), Gaps = 4/199 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           ++L++ P L++M+T F R IIV S+LR  +G+   PPN V++ L+LF++ +VM P +D+ 
Sbjct: 77  SLLTVLPSLILMMTSFTRIIIVLSLLRQALGLQQTPPNQVLVGLSLFLSLFVMRPAIDQI 136

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
                 P    QI    A+ R A+    FM   TRE DL LF ++A +    T       
Sbjct: 137 NAQAFDPYGKGQIPIEEAVGRSAKVLHGFMTKQTRETDLKLFQNLAEAPAFRTPA----D 192

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
           I + IL+P+F+ SEL+ +F+IGF+I LPFLIID++VA+ +MA+GMMML PT IS+PFK++
Sbjct: 193 IPFSILLPAFVTSELKTAFQIGFMIFLPFLIIDLVVASTLMALGMMMLSPTIISMPFKLL 252

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FVL+DGW+L + +L  SF
Sbjct: 253 LFVLVDGWALTMGSLAGSF 271


>gi|15606937|ref|NP_214318.1| flagellar biosynthesis protein FliP [Aquifex aeolicus VF5]
 gi|6225367|sp|O67750|FLIP_AQUAE RecName: Full=Flagellar biosynthetic protein fliP
 gi|2984179|gb|AAC07711.1| flagellar biosynthetic protein FliP [Aquifex aeolicus VF5]
          Length = 239

 Score =  174 bits (442), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 90/207 (43%), Positives = 140/207 (67%), Gaps = 4/207 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +R     TILS+ P +LIM T F R ++V S+LR  +G    PPN VII+L+LF+TF++M
Sbjct: 35  IRLLIFLTILSLVPSILIMFTSFTRLVVVLSLLRQAIGTPQAPPNQVIIALSLFLTFFIM 94

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            PT+D+     +QP +  +I++    +RV      FM  +TR++ L  F+ +A       
Sbjct: 95  KPTIDKINSEALQPYIREEISDEEFFKRVEFYAKDFMLKHTRKETLEAFLSIAKIPK--- 151

Query: 160 DITKNDH-IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
           D  K  H I  R++IP+FM+SEL+ +FEI FL+ +PFLI+D++VA+I+++MG++M+PP  
Sbjct: 152 DSVKEPHEIPLRVVIPAFMVSELKTAFEIVFLLYIPFLIVDLVVASILISMGIIMIPPQL 211

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ISLPFK++ FVL +GW L+V +LV+S+
Sbjct: 212 ISLPFKIMLFVLANGWELVVLSLVRSY 238


>gi|294013059|ref|YP_003546519.1| flagellar biosynthetic protein FliP [Sphingobium japonicum UT26S]
 gi|292676389|dbj|BAI97907.1| flagellar biosynthetic protein FliP [Sphingobium japonicum UT26S]
          Length = 288

 Score =  174 bits (442), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 87/199 (43%), Positives = 131/199 (65%), Gaps = 4/199 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           ++L++ P L++M+T F R IIV S+LR  +G+   PPN V++ L+LF++ +VM P +D+ 
Sbjct: 92  SLLTVLPSLILMMTSFTRIIIVLSLLRQALGLQQTPPNQVLVGLSLFLSLFVMRPAIDQI 151

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
                 P    QI+   A+ R  +    FM   TRE DL LF ++A +    T       
Sbjct: 152 NGQAFDPYGKGQISIEEAVGRSGKVLHGFMTKQTRETDLKLFQNLAEAPAFRTPA----D 207

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
           I + IL+P+F+ SEL+ +F+IGF+I LPFLIID++VA+ +MA+GMMML PT IS+PFK++
Sbjct: 208 IPFSILLPAFVTSELKTAFQIGFMIFLPFLIIDLVVASTLMALGMMMLSPTIISMPFKLL 267

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FVL+DGW+L + +L  SF
Sbjct: 268 LFVLVDGWALTMGSLAGSF 286


>gi|294339800|emb|CAZ88163.1| Flagellar biosynthetic protein FliP [Thiomonas sp. 3As]
          Length = 255

 Score =  174 bits (441), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 96/207 (46%), Positives = 145/207 (70%), Gaps = 4/207 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T    T L   P +L+M+T F R IIV S+L+  +G  +VPP+ VI+ L+LF+TF+VM
Sbjct: 52  VQTLLFMTALVFLPAMLLMMTAFTRIIIVLSLLKQALGTTTVPPSQVIVGLSLFLTFFVM 111

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP L++  ++ I+PLM+NQIT   A+Q  A P   FM   TR++DL+LF+ +  S H+  
Sbjct: 112 SPVLNQVNDVAIKPLMDNQITMQQALQMGAAPLRTFMLGQTRQEDLALFVKL--SGHKAL 169

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           D  K       +L+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA ++M+MGMMML P ++
Sbjct: 170 D--KPADTPMSLLVPAFVTSELKTAFQIGFVIFIPFLIIDMVVAAVLMSMGMMMLSPVTV 227

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
           S P K++ FVL+ GW L++ +L++SFI
Sbjct: 228 SFPLKLMLFVLVGGWELVIGSLMQSFI 254


>gi|170725983|ref|YP_001760009.1| flagellar biosynthesis protein FliP [Shewanella woodyi ATCC 51908]
 gi|169811330|gb|ACA85914.1| flagellar biosynthetic protein FliP [Shewanella woodyi ATCC 51908]
          Length = 248

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 88/201 (43%), Positives = 132/201 (65%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T LS  P +LIM+T F R IIV SILR  +G+   P N V+I +++F+TF++MSP  D
Sbjct: 50  LMTALSFLPAMLIMLTSFTRIIIVLSILRQAIGLQQTPSNQVLIGMSMFLTFFIMSPVFD 109

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +  +  ++P MN  +    A     EP   FM   TR  DL  F+++  S ++N  I   
Sbjct: 110 KVYDSAVKPYMNESMNIEQAFHVGKEPIKEFMLAQTRVTDLETFVEI--SGYQN--INSV 165

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D     ++IP+F+ SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P  +SLPFK
Sbjct: 166 DEAPMSVIIPAFITSELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFK 225

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGWSL++  L  SF
Sbjct: 226 IMLFVLVDGWSLVMGTLANSF 246


>gi|323341374|ref|ZP_08081618.1| flagellar biosynthetic protein FliP [Lactobacillus ruminis ATCC
           25644]
 gi|323091251|gb|EFZ33879.1| flagellar biosynthetic protein FliP [Lactobacillus ruminis ATCC
           25644]
          Length = 268

 Score =  174 bits (440), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 106/255 (41%), Positives = 152/255 (59%), Gaps = 11/255 (4%)

Query: 1   MIRYCFFALFLVT---PELVFAKSSLHDVMNI------PADLSISTWIVRTFGIFTILSI 51
           ++ +   A FL+    P+ V A S+  DV N         D   S+ IV TF I T+LSI
Sbjct: 14  LVLFGMMACFLIAVRLPDHVAAVST-SDVTNTVNKLINGNDQGSSSKIVDTFVIMTLLSI 72

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
            P++LIM T F R I+V S +R+ +G    PPN V+I LALF+T + M P  +      I
Sbjct: 73  IPLILIMTTSFTRIIVVLSFVRSSLGTQQNPPNQVLIGLALFLTLFTMRPVYNDIYHNAI 132

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT-DITKNDHIEYR 170
           QP   N+IT+     R       FM     +KD+ LF D+   + R          I + 
Sbjct: 133 QPYNENKITQQEVFDRSENRMKEFMYKQANKKDVKLFKDLDQKNERKKIKYRTYKDIPFT 192

Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230
           ++ P+F++SEL+ +F IGFL+ +PF+IID++VA+I+M+MGM+ML P  ISLPFK++ FVL
Sbjct: 193 VMAPAFILSELKTAFSIGFLLFIPFMIIDLVVASILMSMGMIMLSPIMISLPFKILLFVL 252

Query: 231 IDGWSLLVENLVKSF 245
           +DGW LLVE+LV+SF
Sbjct: 253 VDGWYLLVESLVQSF 267


>gi|149200773|ref|ZP_01877748.1| Flagellar transport protein FliP [Roseovarius sp. TM1035]
 gi|149145106|gb|EDM33132.1| Flagellar transport protein FliP [Roseovarius sp. TM1035]
          Length = 246

 Score =  174 bits (440), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 84/206 (40%), Positives = 135/206 (65%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   + T L++ P L++ +T F R IIV SILR  MG    PPN V+I++ALF++F+VM
Sbjct: 41  LQILALMTALTVLPSLVLGMTAFTRIIIVLSILRQAMGTMQTPPNQVLIAIALFLSFFVM 100

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P L    +  + P ++ Q+    A++   +    FM  NTR+ DL +F ++A  +   +
Sbjct: 101 QPVLTEVYDTALSPYLDGQMAPDVAVRLAWDKLSGFMLANTRQNDLLMFAELAGDAPYAS 160

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           D      +   +L+P+++ SEL+ +F+IGFL+ LPFL+IDM++A+I+MA+GMMML P  +
Sbjct: 161 DA----EVPVAVLLPAYITSELKTAFQIGFLLFLPFLVIDMVIASILMALGMMMLSPMIV 216

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW+L + +L  SF
Sbjct: 217 SLPFKLLLFVLVDGWALTMGSLASSF 242


>gi|302874603|ref|YP_003843236.1| flagellar biosynthetic protein FliP [Clostridium cellulovorans
           743B]
 gi|307690786|ref|ZP_07633232.1| flagellar biosynthesis protein FliP [Clostridium cellulovorans
           743B]
 gi|302577460|gb|ADL51472.1| flagellar biosynthetic protein FliP [Clostridium cellulovorans
           743B]
          Length = 257

 Score =  174 bits (440), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 85/193 (44%), Positives = 130/193 (67%), Gaps = 4/193 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +L+ +T F R  IV S L+  +G    PP+ V+I L+LF+TF+VMSPT+ +     +Q
Sbjct: 68  PSILLTMTSFTRISIVLSFLKNAIGTQQTPPSQVLIGLSLFLTFFVMSPTISKVNTNALQ 127

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P +NNQI++  AI         FM   TR+KDL LF D+   +      TK + ++  ++
Sbjct: 128 PYLNNQISQQQAIDIGTTEMKTFMLKQTRKKDLKLFRDIRGVAEE----TKPEDLKMEVV 183

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           IPSF+ISEL+ +F IGF I +PFLIID +VA+++M+MGM M+ P  +S+PFK++ F+++D
Sbjct: 184 IPSFIISELKTAFTIGFFIYIPFLIIDFVVASVLMSMGMFMISPMMVSIPFKILLFIMVD 243

Query: 233 GWSLLVENLVKSF 245
           GW+L+V++LV SF
Sbjct: 244 GWNLIVKSLVLSF 256


>gi|255021382|ref|ZP_05293430.1| Flagellar biosynthesis protein fliP [Acidithiobacillus caldus ATCC
           51756]
 gi|254969245|gb|EET26759.1| Flagellar biosynthesis protein fliP [Acidithiobacillus caldus ATCC
           51756]
          Length = 223

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 86/207 (41%), Positives = 137/207 (66%), Gaps = 4/207 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++T    T+L   P LL+M+T F R IIV S+L+  +G   +PP+ V++ LALF+TF+VM
Sbjct: 20  IQTLLFMTVLVFLPALLLMMTAFTRIIIVLSLLKQALGSTQMPPSQVMVGLALFLTFFVM 79

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +P   +     +QPL +N+I    A+ +   P   FM + TR  DL+LF+ +  S H+  
Sbjct: 80  APVFQQINTEALQPLNDNKIDLVQAMAKAEGPLRNFMLSQTRPDDLALFVKL--SGHKAL 137

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           +  K       +L+P+F+ SEL+  F+IGFLI +PF+IID++VA ++M++GMMML P ++
Sbjct: 138 E--KPSDTPLSLLVPAFITSELKTGFQIGFLIFIPFVIIDLVVAAVLMSLGMMMLSPVTV 195

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
           S P K++ FVL+DGW L++ +LV+SF+
Sbjct: 196 SFPLKLMLFVLVDGWDLVIGSLVQSFV 222


>gi|172057873|ref|YP_001814333.1| flagellar biosynthetic protein FliP [Exiguobacterium sibiricum
           255-15]
 gi|171990394|gb|ACB61316.1| flagellar biosynthetic protein FliP [Exiguobacterium sibiricum
           255-15]
          Length = 222

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 83/193 (43%), Positives = 127/193 (65%), Gaps = 4/193 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP LLI++TCF R I+V S +R+ +G    PPN +++ LALF+T +VM+P L       +
Sbjct: 32  APSLLILMTCFTRVIVVLSFVRSALGTQQTPPNQLLVGLALFITLFVMAPVLTELNTTAL 91

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           QP M+ +I++  A  +       FM   TR  DL LF+   +         K + I    
Sbjct: 92  QPYMDEKISQDEAFDQAGGTMKRFMSQYTRSNDLELFLKYGNYEKPE----KVEDIPLVA 147

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           L+P++ ISEL+ +F+IGF+I +PFL+IDM+V++++M+MGMMMLPP  I+LPFK++ F+L+
Sbjct: 148 LVPAYAISELKTAFQIGFMIFIPFLVIDMVVSSVLMSMGMMMLPPVMIALPFKLLLFILV 207

Query: 232 DGWSLLVENLVKS 244
           DGW L+VE+L+ S
Sbjct: 208 DGWHLIVESLLVS 220


>gi|83589638|ref|YP_429647.1| flagellar biosynthesis protein FliP [Moorella thermoacetica ATCC
           39073]
 gi|83572552|gb|ABC19104.1| flagellar biosynthetic protein FliP [Moorella thermoacetica ATCC
           39073]
          Length = 317

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 84/186 (45%), Positives = 127/186 (68%), Gaps = 4/186 (2%)

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R I+V S +R+ +     PPN ++I LALF+TF++M+P  ++     I P +  +I
Sbjct: 136 TSFTRIIVVLSFVRSALATQQTPPNQILIGLALFLTFFIMAPVYNQVKTQAIDPYLAGRI 195

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           T+  A+   A P   FM   TREKDL+LF+ M+  +   T     D +   +LIP+F+IS
Sbjct: 196 TQEQALAAGARPVREFMYRQTREKDLALFVHMSGMAQPRT----RDDVPLHVLIPAFIIS 251

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+ +F++GFLI +PFLIID+++A+ +MAMGM M+PP  ISLPFK++ FVL+DGW L+V+
Sbjct: 252 ELKTAFQMGFLIYIPFLIIDLVIASTLMAMGMFMVPPVMISLPFKLMLFVLVDGWYLVVK 311

Query: 240 NLVKSF 245
           +L++SF
Sbjct: 312 SLLESF 317


>gi|114562370|ref|YP_749883.1| flagellar biosynthesis protein FliP [Shewanella frigidimarina NCIMB
           400]
 gi|114333663|gb|ABI71045.1| flagellar biosynthetic protein FliP [Shewanella frigidimarina NCIMB
           400]
          Length = 253

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 84/201 (41%), Positives = 132/201 (65%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T +S  P ++IM+T F R I+V SILR  +G+   P N V+I ++LFMTF++M+P  D
Sbjct: 55  LMTAMSFIPAMVIMLTSFTRIIVVLSILRQALGLQQTPSNQVLIGISLFMTFFIMAPVFD 114

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +     ++P +N  +T T A     EP   FM +  R  DL  F+++  S ++  DI   
Sbjct: 115 KIYAEAVEPYINETMTLTQAYDVGKEPIKTFMLSQVRTTDLQTFIEI--SGYK--DIQSP 170

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           +     ++IP+F+ SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P  +SLPFK
Sbjct: 171 EQAPMSVVIPAFITSELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFK 230

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW L++  L  SF
Sbjct: 231 IMLFVLVDGWGLVMGTLANSF 251


>gi|332305669|ref|YP_004433520.1| flagellar biosynthetic protein FliP [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172998|gb|AEE22252.1| flagellar biosynthetic protein FliP [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 251

 Score =  173 bits (438), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 87/209 (41%), Positives = 134/209 (64%), Gaps = 3/209 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           T  ++   I T LS+ P  ++M+T F R IIV SILR  +G+   P N ++I ++LF++ 
Sbjct: 42  TMTLQVVAIMTALSLLPAFIMMMTSFTRIIIVLSILRQAIGLQQSPSNQILIGVSLFLSM 101

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           ++M+P  ++  E  +QP +N QIT   A +   EP   FM   TR KDL  F+++     
Sbjct: 102 FIMAPVFEKINETALQPYLNEQITSIQAYELAKEPLRGFMLAQTRVKDLETFVEIGGYED 161

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
           +     +   +   ILIP+F+ SEL+ +F+IGF++ +PFLI+D++VA+I+MAMGMMML P
Sbjct: 162 Q---FQEPADVPMNILIPAFVTSELKTAFQIGFMLFIPFLILDLVVASILMAMGMMMLSP 218

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             +SLPFK++ FVL+DGW+L+   L  SF
Sbjct: 219 MIVSLPFKLMLFVLVDGWNLIFGTLANSF 247


>gi|220934504|ref|YP_002513403.1| flagellar biosynthetic protein FliP [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995814|gb|ACL72416.1| flagellar biosynthetic protein FliP [Thioalkalivibrio sp. HL-EbGR7]
          Length = 247

 Score =  172 bits (437), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 88/193 (45%), Positives = 129/193 (66%), Gaps = 4/193 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P  LIM+T F R IIV +ILR G+G    P N ++I LALF+T +VM+P  DR     IQ
Sbjct: 57  PSALIMMTSFTRIIIVLAILRQGLGTTQTPSNQILIGLALFLTLFVMTPVFDRIHVEAIQ 116

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P M   ++   A+Q  ++P   FM   TRE DL++F   A  S R    +  D + + +L
Sbjct: 117 PYMEESLSMEEAVQTASQPIRQFMLAQTRESDLAMF---ARISGREGFESPED-VPFTLL 172

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           + SF+ SEL+ +F+IGF++++PFLIID++VA+++M+MGM+ML P  ISLPFK++ FVL+D
Sbjct: 173 MASFLTSELKTAFQIGFMLLIPFLIIDLVVASVLMSMGMVMLSPLIISLPFKIMLFVLVD 232

Query: 233 GWSLLVENLVKSF 245
           GW+L++  L  SF
Sbjct: 233 GWALIMGTLAASF 245


>gi|188586035|ref|YP_001917580.1| flagellar biosynthetic protein FliP [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350722|gb|ACB84992.1| flagellar biosynthetic protein FliP [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 255

 Score =  172 bits (437), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 89/193 (46%), Positives = 127/193 (65%), Gaps = 4/193 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P LLI+ T F R +IV S +R  +    +PPN V+I LALF+TF++MSP      +   +
Sbjct: 66  PALLILTTSFTRVVIVLSFIRNALATQQMPPNQVLIGLALFLTFFIMSPVWGDVYQEAWE 125

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P     IT+  AI+   EP   FM   TRE DL+LF++ +   +  T     + +   ++
Sbjct: 126 PYREGDITQEEAIENGLEPVREFMYQQTREDDLALFVEYSDIENPAT----IEDVPTHVI 181

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           IP+F+ISEL+ +F+IGF+I +PFLIIDMIVA+ +M+MGM+MLPP  ISLPFKV+ FVL+D
Sbjct: 182 IPAFVISELKTAFQIGFMIFVPFLIIDMIVASTLMSMGMLMLPPVMISLPFKVLLFVLVD 241

Query: 233 GWSLLVENLVKSF 245
           GW L+  +L+ SF
Sbjct: 242 GWFLITRSLLISF 254


>gi|304321125|ref|YP_003854768.1| flagellar biosynthetic protein FliP [Parvularcula bermudensis
           HTCC2503]
 gi|303300027|gb|ADM09626.1| flagellar biosynthetic protein FliP [Parvularcula bermudensis
           HTCC2503]
          Length = 246

 Score =  172 bits (435), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 81/194 (41%), Positives = 125/194 (64%), Gaps = 3/194 (1%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +L+M+TC P  +IVFS LR  +G+   PP+++I++LALF+TF+VM P   ++ E GI
Sbjct: 54  APGILMMITCLPLMVIVFSFLRQALGIPQSPPSMMIMALALFLTFFVMEPVFQQAWEAGI 113

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
            P    +I E TA +    PF VFM     +  ++    ++ S     D    + +   +
Sbjct: 114 APYQEGEIDEQTAFREAIAPFRVFMEARVHDSTIA---ALSESLPERWDEDVMETVPLSL 170

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           L+PSFM+SE++ +F+IGF + LPFL ID++ A ++MAMGMMM+PP  +SLPFK+ FFV+ 
Sbjct: 171 LVPSFMLSEIKTAFQIGFAVFLPFLAIDLVTAAVLMAMGMMMVPPAVVSLPFKLAFFVMA 230

Query: 232 DGWSLLVENLVKSF 245
           DGW+ L   L++ +
Sbjct: 231 DGWTKLSAALLRGY 244


>gi|114320138|ref|YP_741821.1| flagellar biosynthesis protein FliP [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226532|gb|ABI56331.1| flagellar biosynthetic protein FliP [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 250

 Score =  172 bits (435), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 85/188 (45%), Positives = 121/188 (64%), Gaps = 4/188 (2%)

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           M+T F R IIV +ILR  MG  S P N V+I LALF+T +VM+P      +  + P +  
Sbjct: 65  MMTSFTRIIIVLAILRQAMGTASTPSNQVLIGLALFLTLFVMAPVFQEVHDTALAPYLAE 124

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
           ++    A++  +EP   FM   TRE DL LF+ +A        +   D + + +L+P+FM
Sbjct: 125 EMAPDEALEAASEPMRGFMIAQTRESDLGLFLRIAGYDQ----VDSPDDVPFTVLVPAFM 180

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
            SEL+ +F IGF+I LPFL+ID++VA+ +M+MGM+ML P  ISLPFK++ FVL+DGWSLL
Sbjct: 181 TSELKTAFTIGFIIYLPFLVIDLVVASTLMSMGMLMLSPMIISLPFKILLFVLVDGWSLL 240

Query: 238 VENLVKSF 245
           +  L  SF
Sbjct: 241 MGTLASSF 248


>gi|163750540|ref|ZP_02157778.1| flagellar biosynthesis protein [Shewanella benthica KT99]
 gi|161329695|gb|EDQ00684.1| flagellar biosynthesis protein [Shewanella benthica KT99]
          Length = 248

 Score =  172 bits (435), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 96/248 (38%), Positives = 148/248 (59%), Gaps = 9/248 (3%)

Query: 2   IRYCF-FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIF---TILSIAPILLI 57
           + YCF  +L L++P   FA   +   + +       T    T  I    T +S  P ++I
Sbjct: 4   LSYCFILSLLLISPG-AFALDGVLPALIVTTTADGGTQYSVTMQILLLMTAMSFLPAMII 62

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           M+T F R I+V SILR  +G+   P N V+I +++FMTF++M+P  D+     +QP +  
Sbjct: 63  MLTSFTRIIVVLSILRQAIGLQQTPSNQVLIGISMFMTFFIMAPVFDKIYAEAVQPYIAE 122

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
            +    A     EP   FM   TR  DL  F+++  S ++N  I   + +   +LIPSF+
Sbjct: 123 TMNIEQAFNIGKEPIKTFMLAQTRVTDLDTFIEI--SGYQN--INSPEDVPMSVLIPSFI 178

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
            SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P  +SLPFK++ FVL+DGWSL+
Sbjct: 179 TSELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLV 238

Query: 238 VENLVKSF 245
           +  L  SF
Sbjct: 239 MGTLANSF 246


>gi|163781853|ref|ZP_02176853.1| flagellar biosynthetic protein FliP [Hydrogenivirga sp. 128-5-R1-1]
 gi|159883073|gb|EDP76577.1| flagellar biosynthetic protein FliP [Hydrogenivirga sp. 128-5-R1-1]
          Length = 225

 Score =  171 bits (434), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 87/194 (44%), Positives = 128/194 (65%), Gaps = 1/194 (0%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +LIM T F R ++V S+LR  +G+  VPPN VI+SLALF+TF++M P  +      +Q
Sbjct: 31  PSILIMTTSFIRIVVVLSVLRQALGVPQVPPNQVIVSLALFLTFFIMKPVFENINTNALQ 90

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH-SSHRNTDITKNDHIEYRI 171
           P M  QI++     RV      FM   TR+  + +FM++A         I K   I   I
Sbjct: 91  PYMKEQISDQEFFNRVTGSLKGFMLKQTRKDTVEVFMEVAKLKKEEREKIRKPSDIPLSI 150

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           LIP+FM+SEL  +FEI FL+ +PFLI+D++VA+I+++MG++M+PP  ISLPFK++ FVL 
Sbjct: 151 LIPAFMVSELTTAFEIVFLLYIPFLIVDIVVASILISMGIIMIPPQIISLPFKIMLFVLA 210

Query: 232 DGWSLLVENLVKSF 245
           +GW L+V +LV+S+
Sbjct: 211 NGWELVVLSLVRSY 224


>gi|332533116|ref|ZP_08408985.1| flagellar biosynthetic protein FliP [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332037398|gb|EGI73852.1| flagellar biosynthetic protein FliP [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 246

 Score =  171 bits (434), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 85/206 (41%), Positives = 130/206 (63%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   I T LS  P  +IM+T F R I+V +ILR  +G+   P N V++ ++LF++ ++M
Sbjct: 41  LQVLAIMTALSFIPAAIIMMTSFTRIIVVLAILRQAIGLQQTPSNQVLLGMSLFLSIFIM 100

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +P   +  E  I+P +N Q+T   A++   EP   FM +  R KDL  F  +A     N+
Sbjct: 101 APIYQQVNERAIEPYLNEQVTSVEALELAKEPMKAFMLSQVRLKDLETFAKIAGYDQLNS 160

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                      +LIP+F+ SEL+ +F IGF+  +PFLI+D++VA+++MAMGMMML P  +
Sbjct: 161 P----QDTPLIVLIPAFVTSELQTAFIIGFMFFIPFLIVDLVVASVLMAMGMMMLSPMIV 216

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGWSL++  L KSF
Sbjct: 217 SLPFKIMLFVLVDGWSLVMGTLAKSF 242


>gi|307546958|ref|YP_003899437.1| flagellar biosynthesis protein FliP [Halomonas elongata DSM 2581]
 gi|307218982|emb|CBV44252.1| flagellar biosynthesis protein FliP [Halomonas elongata DSM 2581]
          Length = 273

 Score =  171 bits (434), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 88/193 (45%), Positives = 126/193 (65%), Gaps = 4/193 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P  L+M+T F R IIV S+LRT MG  + PPN V++ LALF+TF++M+P           
Sbjct: 83  PAALLMMTSFTRIIIVLSLLRTAMGTQATPPNQVLLGLALFLTFFIMAPVFGEVHAQAWV 142

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           PL N  I     +++   P   FM   TRE DL+LF  +A       ++     +  RIL
Sbjct: 143 PLSNGDINFPEFLRQAQGPLREFMMAQTREPDLALFARLADIG----ELQGPADVPMRIL 198

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           +PSF+ SEL+ +F+IGF I +PFLIID++VA+ +M++GMMM+PP +ISLPFK++ FVL+D
Sbjct: 199 VPSFVTSELKTAFQIGFTIFIPFLIIDLVVASTLMSLGMMMVPPITISLPFKLMLFVLVD 258

Query: 233 GWSLLVENLVKSF 245
           GW LL+ +L +SF
Sbjct: 259 GWQLLIGSLAESF 271


>gi|322833206|ref|YP_004213233.1| flagellar biosynthetic protein FliP [Rahnella sp. Y9602]
 gi|321168407|gb|ADW74106.1| flagellar biosynthetic protein FliP [Rahnella sp. Y9602]
          Length = 260

 Score =  171 bits (433), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 89/206 (43%), Positives = 138/206 (66%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++T    T L++ P +L+M T F R IIV  +LR  +G  S PPN V++ L LF+TF+VM
Sbjct: 57  IQTLVFITTLTLLPAMLLMCTSFTRIIIVLGLLRNALGTPSAPPNQVLLGLGLFLTFFVM 116

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +P  D+      QP   N+IT   A+ + A+P   FM   TRE DL+L+  +A+      
Sbjct: 117 APVFDKIYSDAYQPFSENKITMQEAMDKGAQPLRQFMLRQTRESDLALYARLANIP---- 172

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +   + +  RIL+P+++ SEL+ +F+IGF + +PF+IID++VA+++MA+GMMM+PP +I
Sbjct: 173 PLAGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFMIIDLVVASVLMALGMMMVPPATI 232

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 233 SLPFKLMLFVLVDGWQLLLGSLAQSF 258


>gi|226944502|ref|YP_002799575.1| flagellar biosynthetic protein [Azotobacter vinelandii DJ]
 gi|226719429|gb|ACO78600.1| flagellar biosynthetic protein [Azotobacter vinelandii DJ]
          Length = 252

 Score =  171 bits (433), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 89/193 (46%), Positives = 135/193 (69%), Gaps = 4/193 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P LL+M+T F R IIV  +LRT +G  + PPN V++ LALF+T ++MSP LDR+ +    
Sbjct: 62  PALLLMMTAFTRIIIVLGLLRTAIGTPAAPPNQVLLGLALFLTLFIMSPVLDRTYQSAWL 121

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P   ++I     ++  ++PF  FM   TRE DL+LF  +A    R  ++   + +  R+L
Sbjct: 122 PFSRDEIGFEQFLETGSQPFREFMLAQTRESDLALFARLA----RLGELEGPEQVPLRVL 177

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           +P+F+ SEL+ +F+IGF I +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+D
Sbjct: 178 MPAFVTSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVD 237

Query: 233 GWSLLVENLVKSF 245
           GW LL+ +L +SF
Sbjct: 238 GWQLLIGSLAQSF 250


>gi|220913717|ref|YP_002489026.1| flagellar biosynthetic protein FliP [Arthrobacter chlorophenolicus
           A6]
 gi|219860595|gb|ACL40937.1| flagellar biosynthetic protein FliP [Arthrobacter chlorophenolicus
           A6]
          Length = 262

 Score =  171 bits (433), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 90/214 (42%), Positives = 136/214 (63%), Gaps = 5/214 (2%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D   ST +V   GI T+LS+AP LL+M+T F +  +V ++ R  + + S+PPN V+  LA
Sbjct: 53  DGQPSTAVVTLIGI-TLLSVAPALLLMMTSFTKIFVVLAMTRNALSLPSIPPNQVLAGLA 111

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           LF++ +VM P L       +QP +N  +    A    A P   FM  +TRE+D++L    
Sbjct: 112 LFLSLFVMWPVLTEINTDAVQPYLNGNLDFNGAFSAGAGPLQQFMLGHTREEDIALMTRA 171

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           A    R  +      +  + LIP+FMISELR +F IGF+I +PFL+ID++V+  +M+MGM
Sbjct: 172 A----RMPNPENPGAVPLQTLIPAFMISELRAAFIIGFVIFIPFLVIDLVVSAALMSMGM 227

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMLPP  ISLPFK++ F+L+DGW L++ +L++S+
Sbjct: 228 MMLPPVMISLPFKILLFILVDGWGLVITSLIQSY 261


>gi|291562035|emb|CBL40851.1| flagellar biosynthetic protein FliP [butyrate-producing bacterium
           SS3/4]
          Length = 218

 Score =  171 bits (433), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 83/203 (40%), Positives = 132/203 (65%), Gaps = 8/203 (3%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T  ++ P +++M++ F R II+ S  R  MG+   PPN+V+  +ALF++ Y+MSP + 
Sbjct: 21  LLTFAALLPSIVVMMSSFMRIIIILSFTRNAMGVQQTPPNMVLTGMALFLSLYIMSPVIG 80

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +   +  +P  N +IT+  A+ R+A+P   FM  NT +  L  F+ M+          K 
Sbjct: 81  QINTVAYEPYKNGEITQQEAVSRMADPLKQFMLRNTEKDTLDHFVQMSKQE------VKK 134

Query: 165 DHIEY--RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
           D  EY   +++P+FM SEL++ F  GFLI LPFL+ID++V+T +M+MGM+MLPPT +SLP
Sbjct: 135 DVKEYPLTVVVPAFMTSELKKGFLAGFLIYLPFLLIDIVVSTTLMSMGMVMLPPTMVSLP 194

Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245
           FK++ F+ ++GW LL  +LV+SF
Sbjct: 195 FKLLLFITVNGWELLFSSLVQSF 217


>gi|148553144|ref|YP_001260726.1| flagellar biosynthesis protein FliP [Sphingomonas wittichii RW1]
 gi|148498334|gb|ABQ66588.1| flagellar biosynthetic protein FliP [Sphingomonas wittichii RW1]
          Length = 278

 Score =  170 bits (431), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 86/201 (42%), Positives = 132/201 (65%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + ++L++ P L++M++ F R IIV S+LR  +G+   PPN V++ LA+F++ +VM P++D
Sbjct: 80  LMSLLTVLPSLVLMMSSFTRIIIVLSLLRQALGLQQTPPNQVLVGLAMFLSLFVMRPSID 139

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +      +P    QIT   AI R       FM   TR+ DL LF D+A +        + 
Sbjct: 140 QINADAFKPYGAGQITIEEAITRSGAVLHRFMVLQTRQTDLKLFADLAKAPK----FARP 195

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
             I + IL+P+F+ SEL+ +F+IGFLI LPFLIID++VA+ +M++GMMML P  IS+PFK
Sbjct: 196 ADIPFSILLPAFVTSELKTAFQIGFLIFLPFLIIDLVVASTLMSLGMMMLSPAIISMPFK 255

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW+L + +L  SF
Sbjct: 256 LLLFVLVDGWALTMGSLAASF 276


>gi|89895724|ref|YP_519211.1| flagellar biosynthesis protein FliP [Desulfitobacterium hafniense
           Y51]
 gi|89335172|dbj|BAE84767.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 236

 Score =  170 bits (431), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 106/235 (45%), Positives = 154/235 (65%), Gaps = 6/235 (2%)

Query: 11  LVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
           LV  + V A     D     A+ + ST  +    + T+LSIAP +L+++T F R IIV S
Sbjct: 7   LVNTDAVLAAGLTLDFGTTTAEQTSSTLQILL--LLTVLSIAPAILVLMTSFTRTIIVLS 64

Query: 71  ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
            +R  +G   +PPN V+I L+LF+TF+VM+PT +      +QP M NQIT+  A+Q+   
Sbjct: 65  FVRNALGTQQLPPNQVLIGLSLFLTFFVMAPTWNEINTQALQPYMQNQITQAEALQQAEA 124

Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
           P   FM   TREKDL+LF+ +A      T       I   +LIP+F+ISEL+ +F++GF 
Sbjct: 125 PLRQFMFEQTREKDLTLFVGLARMEQPQT----YGDIPTYVLIPAFVISELKTAFQMGFA 180

Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           I +PF++IDM+VA+++M+MGMMMLPP  +SLPFK++ FVL+DGW L+V++LV SF
Sbjct: 181 IFIPFMVIDMLVASVLMSMGMMMLPPMMVSLPFKILLFVLVDGWHLVVQSLVTSF 235


>gi|53724243|ref|YP_104210.1| flagellar biosynthesis protein FliP [Burkholderia mallei ATCC
           23344]
 gi|67641568|ref|ZP_00440344.1| flagellar biosynthetic protein FliP [Burkholderia mallei GB8 horse
           4]
 gi|167001619|ref|ZP_02267413.1| flagellar biosynthetic protein FliP [Burkholderia mallei PRL-20]
 gi|254201283|ref|ZP_04907647.1| flagellar biosynthetic protein FliP [Burkholderia mallei FMH]
 gi|254206625|ref|ZP_04912976.1| flagellar biosynthetic protein FliP [Burkholderia mallei JHU]
 gi|254357358|ref|ZP_04973632.1| flagellar biosynthetic protein FliP [Burkholderia mallei
           2002721280]
 gi|52427666|gb|AAU48259.1| flagellar biosynthetic protein FliP, interruption-C [Burkholderia
           mallei ATCC 23344]
 gi|147747177|gb|EDK54253.1| flagellar biosynthetic protein FliP [Burkholderia mallei FMH]
 gi|147752167|gb|EDK59233.1| flagellar biosynthetic protein FliP [Burkholderia mallei JHU]
 gi|148026422|gb|EDK84507.1| flagellar biosynthetic protein FliP [Burkholderia mallei
           2002721280]
 gi|238522521|gb|EEP85965.1| flagellar biosynthetic protein FliP [Burkholderia mallei GB8 horse
           4]
 gi|243062629|gb|EES44815.1| flagellar biosynthetic protein FliP [Burkholderia mallei PRL-20]
          Length = 175

 Score =  170 bits (431), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 79/176 (44%), Positives = 118/176 (67%), Gaps = 4/176 (2%)

Query: 70  SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129
           S+LR  +G  S PPN V++ LALF+T +VMSP LDR+     +P     +    A+QR  
Sbjct: 3   SLLRQAIGTASTPPNQVLVGLALFLTLFVMSPVLDRAYNDAYKPFSEGTLQMDQAVQRGT 62

Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189
            PF  FM   TRE DL+LF  ++ ++     +   + +   +L+P+F+ SEL+  F+IGF
Sbjct: 63  APFKAFMLKQTRETDLALFAKISKAAP----MQGPEDVPLSLLVPAFVTSELKTGFQIGF 118

Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            I +PFLIIDM+VA+++M+MGMMM+ P ++SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 119 TIFIPFLIIDMVVASVLMSMGMMMVSPATVSLPFKLMLFVLVDGWQLLIGSLAQSF 174


>gi|54294676|ref|YP_127091.1| flagellar biosynthesis protein FliP [Legionella pneumophila str.
           Lens]
 gi|53754508|emb|CAH15992.1| Flagellar biosynthetic protein FliP [Legionella pneumophila str.
           Lens]
          Length = 249

 Score =  170 bits (431), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 95/199 (47%), Positives = 137/199 (68%), Gaps = 5/199 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T+L++ P LL+ +T F R IIV SILR  +GM   P N ++I +ALFMT++VMSP  ++ 
Sbjct: 53  TLLTVLPGLLMAMTSFTRIIIVLSILRQAIGMAQTPTNQILIGIALFMTYFVMSPVFNKI 112

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
            E  IQP MN +I  + A+    +P   FM N TR+ DLSLF   AH+  +  D      
Sbjct: 113 NETAIQPYMNERIDFSLALSNAQKPLRQFMLNQTRKNDLSLFEKFAHNVPKTLD-----E 167

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
           I   +LIP+F+ SEL+ +F+IGF++ LPFLIID++V++++MAMGMMML P  ISLPFK++
Sbjct: 168 IPMSVLIPAFITSELKTAFQIGFILFLPFLIIDLVVSSLLMAMGMMMLSPLIISLPFKIM 227

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FV++DGW+L++ +L  SF
Sbjct: 228 LFVMVDGWTLVLGSLASSF 246


>gi|119469996|ref|ZP_01612801.1| flagellar biosynthesis protein P [Alteromonadales bacterium TW-7]
 gi|119446706|gb|EAW27979.1| flagellar biosynthesis protein P [Alteromonadales bacterium TW-7]
          Length = 246

 Score =  170 bits (431), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 83/206 (40%), Positives = 131/206 (63%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   I T LS  P  +IM+T F R I+V +ILR  +G+   P N V++ ++LF++ ++M
Sbjct: 41  LQVLAIMTALSFIPAAIIMMTSFTRIIVVLAILRQAIGLQQTPSNQVLLGMSLFLSIFIM 100

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +P   +  ++ I+P +N Q+T   A++   EP   FM +  R KDL  F  +A      +
Sbjct: 101 APIYQKVNDVAIEPYLNEQVTSVQALELAKEPMKAFMLSQVRLKDLETFAKIAGYDKLES 160

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                +     +LIP+F+ SEL+ +F IGF+  +PFLI+D++VA+++MAMGMMML P  +
Sbjct: 161 P----EETPLIVLIPAFVTSELQTAFIIGFMFFIPFLIVDLVVASVLMAMGMMMLSPMIV 216

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGWSL++  L KSF
Sbjct: 217 SLPFKIMLFVLVDGWSLVMGTLAKSF 242


>gi|88858098|ref|ZP_01132740.1| flagellar biosynthesis [Pseudoalteromonas tunicata D2]
 gi|88819715|gb|EAR29528.1| flagellar biosynthesis [Pseudoalteromonas tunicata D2]
          Length = 247

 Score =  170 bits (431), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 94/251 (37%), Positives = 151/251 (60%), Gaps = 14/251 (5%)

Query: 1   MIRYCFF-ALFLVTPELVFAKSSLHDV-----MNIPADLSISTWIVRTFGIFTILSIAPI 54
           MI++    ALF ++P L  A+  L  +      +   D S+S   ++   I T LS  P 
Sbjct: 1   MIKWIILIALFTLSPSLS-AEQGLQALTVTTNADGTQDYSVS---LQVLAIMTALSFIPA 56

Query: 55  LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
            +IM+T F R I+V +ILR  +G+ S P N V++ +++FM+ ++M+P   +  E  I P 
Sbjct: 57  AVIMMTSFTRIIVVLAILRQAIGLQSTPSNQVLVGMSVFMSIFIMAPIYQQIHEAAIDPY 116

Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
           +  ++T   A+++  +P   FM   TR  DL  F  +A     +    K +   + ++IP
Sbjct: 117 LKEELTSIQALEKAKDPLKTFMLRQTRISDLETFAQIAGLEKLD----KPEDAPFIVVIP 172

Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234
           +F+ SEL+ +F IGF+  +PFLI+D++VA+++MAMGMMML P  +SLPFK++ FVL+DGW
Sbjct: 173 AFITSELQTAFIIGFMFFIPFLIVDLVVASVLMAMGMMMLSPMIVSLPFKIMLFVLVDGW 232

Query: 235 SLLVENLVKSF 245
           SL++  L KSF
Sbjct: 233 SLVMGTLAKSF 243


>gi|254497497|ref|ZP_05110290.1| truncated flagellar biosynthesis protein FliP [Legionella
           drancourtii LLAP12]
 gi|254353312|gb|EET12054.1| truncated flagellar biosynthesis protein FliP [Legionella
           drancourtii LLAP12]
          Length = 189

 Score =  170 bits (431), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 85/191 (44%), Positives = 129/191 (67%), Gaps = 5/191 (2%)

Query: 55  LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
           +L+ +T F R IIV SILR  +G+   P N V+I +ALFMT++VM+PT ++  +  +QP 
Sbjct: 1   MLMAMTAFTRIIIVLSILRQAIGLAQAPTNQVLIGIALFMTYFVMAPTFNKINDTALQPY 60

Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
           +   I    A+    EP   FM N TR+ DL+LF   A+    +     ND +   ++IP
Sbjct: 61  LAETIKFPQAMANAQEPLRDFMLNQTRKNDLALFEKFANKQPASL----ND-VPMSVIIP 115

Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234
           +F+ SEL+ +F+IGF++ LPFLIID++V++++MAMGMMML P  ISLPFK++ FV++DGW
Sbjct: 116 AFITSELKTAFQIGFILFLPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIMLFVMVDGW 175

Query: 235 SLLVENLVKSF 245
           +L++ +L  SF
Sbjct: 176 TLILGSLASSF 186


>gi|260752858|ref|YP_003225751.1| flagellar biosynthesis protein FliP [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258552221|gb|ACV75167.1| flagellar biosynthetic protein FliP [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 316

 Score =  170 bits (431), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 87/194 (44%), Positives = 122/194 (62%), Gaps = 4/194 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +++M+T F R IIV S+LR  +G+   PPN V+I LALF++ +VM P LD+       
Sbjct: 126 PSIILMMTSFTRIIIVLSLLRQAIGLQQTPPNQVLIGLALFLSLFVMRPVLDQINTTAFS 185

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P    +I    AI R       FM   TR+ DL LF D+AH    +      + I + +L
Sbjct: 186 PYGRGEIQIEEAIMRSGTALHGFMTKQTRKNDLQLFTDLAH----HPRYENAESIPFTVL 241

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           +PSF+ SEL+ +FEIGFLI LPF+IID++VA  + A+GMMML P  IS PFK++ F+++D
Sbjct: 242 VPSFVTSELKTAFEIGFLIFLPFIIIDIVVACTLTALGMMMLSPQIISAPFKLLLFIMVD 301

Query: 233 GWSLLVENLVKSFI 246
           GW+L V +L  SFI
Sbjct: 302 GWALTVGSLAGSFI 315


>gi|241761180|ref|ZP_04759269.1| flagellar biosynthetic protein FliP [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241374799|gb|EER64260.1| flagellar biosynthetic protein FliP [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 316

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 87/194 (44%), Positives = 122/194 (62%), Gaps = 4/194 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +++M+T F R IIV S+LR  +G+   PPN V+I LALF++ +VM P LD+       
Sbjct: 126 PSIILMMTSFTRIIIVLSLLRQAIGLQQTPPNQVLIGLALFLSLFVMRPVLDQINTTAFS 185

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P    +I    AI R       FM   TR+ DL LF D+AH    +      + I + +L
Sbjct: 186 PYGRGEIQIEEAIMRSGTALHGFMTKQTRKNDLQLFTDLAH----HPRYENAESIPFTVL 241

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           +PSF+ SEL+ +FEIGFLI LPF+IID++VA  + A+GMMML P  IS PFK++ F+++D
Sbjct: 242 VPSFVTSELKTAFEIGFLIFLPFIIIDIVVACTLTALGMMMLSPQIISAPFKLLLFIMVD 301

Query: 233 GWSLLVENLVKSFI 246
           GW+L V +L  SFI
Sbjct: 302 GWALTVGSLAGSFI 315


>gi|56551543|ref|YP_162382.1| flagellar biosynthesis protein FliP [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|56543117|gb|AAV89271.1| flagellar biosynthetic protein FliP [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 316

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 87/194 (44%), Positives = 122/194 (62%), Gaps = 4/194 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +++M+T F R IIV S+LR  +G+   PPN V+I LALF++ +VM P LD+       
Sbjct: 126 PSIILMMTSFTRIIIVLSLLRQAIGLQQTPPNQVLIGLALFLSLFVMRPVLDQINTTAFS 185

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P    +I    AI R       FM   TR+ DL LF D+AH    +      + I + +L
Sbjct: 186 PYGRGEIQIEEAIMRSGTALHGFMTKQTRKNDLQLFTDLAH----HPRYENAESIPFTVL 241

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           +PSF+ SEL+ +FEIGFLI LPF+IID++VA  + A+GMMML P  IS PFK++ F+++D
Sbjct: 242 VPSFVTSELKTAFEIGFLIFLPFIIIDIVVACTLTALGMMMLSPQIISAPFKLLLFIMVD 301

Query: 233 GWSLLVENLVKSFI 246
           GW+L V +L  SFI
Sbjct: 302 GWALTVGSLAGSFI 315


>gi|109899342|ref|YP_662597.1| flagellar biosynthesis protein FliP [Pseudoalteromonas atlantica
           T6c]
 gi|109701623|gb|ABG41543.1| flagellar biosynthetic protein FliP [Pseudoalteromonas atlantica
           T6c]
          Length = 251

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 85/209 (40%), Positives = 134/209 (64%), Gaps = 3/209 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           T  ++   I T LS+ P  ++M+T F R IIV SILR  +G+   P N ++I ++LF++ 
Sbjct: 42  TMTLQVVAIMTALSLLPAFIMMMTSFTRIIIVLSILRQAIGLQQSPSNQILIGVSLFLSM 101

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           ++M+P  ++  E  +QP ++ QIT   A +   EP   FM   TR KDL  F+++     
Sbjct: 102 FIMAPVFEKINETALQPYLSEQITSIQAYELAKEPLRGFMLAQTRIKDLETFVEIGGYED 161

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
           +     +   +   +LIP+F+ SEL+ +F+IGF++ +PFLI+D++VA+I+MAMGMMML P
Sbjct: 162 Q---FQEPADVPMNVLIPAFVTSELKTAFQIGFMLFIPFLILDLVVASILMAMGMMMLSP 218

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             +SLPFK++ FVL+DGW+L+   L  SF
Sbjct: 219 MIVSLPFKLMLFVLVDGWNLIFGTLANSF 247


>gi|54297702|ref|YP_124071.1| flagellar biosynthesis protein FliP [Legionella pneumophila str.
           Paris]
 gi|53751487|emb|CAH12905.1| Flagellar biosynthetic protein FliP [Legionella pneumophila str.
           Paris]
          Length = 249

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 95/199 (47%), Positives = 137/199 (68%), Gaps = 5/199 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T+L++ P LL+ +T F R IIV SILR  +GM   P N ++I +ALFMT++VMSP  ++ 
Sbjct: 53  TLLTVLPGLLMAMTSFTRIIIVLSILRQAIGMAQTPTNQILIGIALFMTYFVMSPVFNKI 112

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
            E  IQP MN +I  + A+    +P   FM N TR+ DLSLF   AH+  +  D      
Sbjct: 113 NETAIQPYMNERIDFSLALSNAQKPLRQFMLNQTRKNDLSLFEKFAHNVPKTLD-----E 167

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
           I   +LIP+F+ SEL+ +F+IGF++ LPFLIID++V++++MAMGMMML P  ISLPFK++
Sbjct: 168 IPMSVLIPAFITSELKTAFQIGFVLFLPFLIIDLVVSSLLMAMGMMMLSPLIISLPFKIM 227

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FV++DGW+L++ +L  SF
Sbjct: 228 LFVMVDGWTLVLGSLASSF 246


>gi|309388834|gb|ADO76714.1| flagellar biosynthetic protein FliP [Halanaerobium praevalens DSM
           2228]
          Length = 254

 Score =  169 bits (429), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 86/194 (44%), Positives = 130/194 (67%), Gaps = 4/194 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP ++I+ T F R IIVFSIL+  + + ++PPN V+I +A+F+T ++M+P      +  +
Sbjct: 64  APAIIILFTSFTRIIIVFSILKRALALNNMPPNQVLIGIAIFLTIFIMAPVWQGVNQDAL 123

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           QP +   I+   A +    P   FM N   E+ L+LF ++A      +     D +   I
Sbjct: 124 QPYLAQDISLEQAYENTITPVREFMFNQVDERSLALFTNIAEIERPES----RDDLPTYI 179

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           LIP+F+I+E++ +F+IGFLI +PFL+IDMIVA+I+M+MGMMMLPP  ISLPFK++ FVL 
Sbjct: 180 LIPAFLINEIKIAFQIGFLIYIPFLMIDMIVASILMSMGMMMLPPVIISLPFKILLFVLA 239

Query: 232 DGWSLLVENLVKSF 245
           DGW +L+ +LVK+F
Sbjct: 240 DGWHILIGSLVKTF 253


>gi|289208347|ref|YP_003460413.1| flagellar biosynthetic protein FliP [Thioalkalivibrio sp. K90mix]
 gi|288943978|gb|ADC71677.1| flagellar biosynthetic protein FliP [Thioalkalivibrio sp. K90mix]
          Length = 256

 Score =  169 bits (427), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 82/189 (43%), Positives = 124/189 (65%), Gaps = 4/189 (2%)

Query: 57  IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
           IM+T F R ++V +ILR G+G    P N ++I LA F+T +VM+P  D   E  + P MN
Sbjct: 70  IMMTAFTRILVVLAILRQGLGTTQTPSNQILIGLAFFLTLFVMAPVFDEIYETAVVPYMN 129

Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
            ++     +Q   +P   FM  +TRE D+ +F ++      +      D I  R+L+P+F
Sbjct: 130 EEMGTEEVLQAGVQPLREFMLAHTRESDIRMFAEINGIDGFD----DADDIPLRLLVPAF 185

Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
           + SEL+ +F+IGFLI++PFLIID++VA+++M+MGM+ML P  ISLPFKV+ FVL+DGW+L
Sbjct: 186 VTSELKTAFQIGFLILIPFLIIDLVVASVLMSMGMVMLSPLIISLPFKVMLFVLVDGWAL 245

Query: 237 LVENLVKSF 245
           ++  L  SF
Sbjct: 246 MMNTLATSF 254


>gi|262273547|ref|ZP_06051361.1| flagellar biosynthesis protein FliP [Grimontia hollisae CIP 101886]
 gi|262222525|gb|EEY73836.1| flagellar biosynthesis protein FliP [Grimontia hollisae CIP 101886]
          Length = 243

 Score =  169 bits (427), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 85/205 (41%), Positives = 130/205 (63%), Gaps = 4/205 (1%)

Query: 41  RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100
           + F + T+LS  P +L+MVT F R IIV  ILR  +G+   PPN V++ +AL +T + M 
Sbjct: 42  QIFLLMTMLSFLPAMLLMVTSFTRIIIVLGILRQAIGLQQSPPNTVLVGIALILTLFTMR 101

Query: 101 PTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD 160
           P L    E  ++P  N  ++   A+    +P   FM   TRE DL   + +A+       
Sbjct: 102 PVLTDIHENAVKPYQNGTLSLQQAVSVAEKPLKAFMLQQTRETDLDQILRIANEPPHQA- 160

Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
               + I+  +L+P+F++SEL+ +F+IGF++ +PFLIID++V++++MAMGMMML P  IS
Sbjct: 161 ---GEDIDLLLLMPAFVLSELKTAFQIGFMLFVPFLIIDIVVSSVLMAMGMMMLSPLIIS 217

Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245
           LPFK++ FV++DGWS+LV  L  SF
Sbjct: 218 LPFKLMIFVMVDGWSMLVGTLTASF 242


>gi|294140213|ref|YP_003556191.1| flagellar biosynthetic protein FliP [Shewanella violacea DSS12]
 gi|293326682|dbj|BAJ01413.1| flagellar biosynthetic protein FliP [Shewanella violacea DSS12]
          Length = 248

 Score =  168 bits (426), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 84/199 (42%), Positives = 131/199 (65%), Gaps = 4/199 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T +S  P ++IM+T F R I+V SILR  +G+   P N V+I +++FMTF++M+P  D+ 
Sbjct: 52  TAMSFLPAMIIMLTSFTRIIVVLSILRQAIGLQQTPSNQVLIGISMFMTFFIMAPVFDKI 111

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
            +  ++P +   +    A     EP   FM   TR  DL  F+++  S ++N D    + 
Sbjct: 112 YDEAVKPYIAETMDIEQAFNIGKEPIKTFMLAQTRLTDLDTFIEI--SGYQNID--SPED 167

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
           +   +LIPSF+ SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P  +SLPFK++
Sbjct: 168 VPMSVLIPSFITSELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIM 227

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FVL+DGWSL++  L  SF
Sbjct: 228 LFVLVDGWSLVMGTLANSF 246


>gi|167630307|ref|YP_001680806.1| flagellar biosynthetic protein flip [Heliobacterium modesticaldum
           Ice1]
 gi|167593047|gb|ABZ84795.1| flagellar biosynthetic protein flip [Heliobacterium modesticaldum
           Ice1]
          Length = 243

 Score =  168 bits (426), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 94/216 (43%), Positives = 148/216 (68%), Gaps = 7/216 (3%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P ++S S   ++   + TILS+AP +LIM+TCF R I+V    RT + + ++PPN V+I 
Sbjct: 34  PTEVSTS---LQILFLLTILSLAPSILIMMTCFTRIIVVLHFTRTALALQTMPPNQVLIG 90

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           L LF+TF++M+PT     +  +QP +   +++  A+++ + P   FM   TREKDL+LF+
Sbjct: 91  LTLFLTFFIMAPTWSAINDQALQPYLAGTLSQEQALEKASTPLREFMLKQTREKDLALFV 150

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
           +M+      T       I  +++IP+F++SEL+ +F+IG +I LPF++IDMIV +++M+M
Sbjct: 151 NMSDMEQPQT----YRDIPIKVVIPAFILSELKTAFQIGAVIYLPFIVIDMIVGSVLMSM 206

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMMLPP  ISLPFKV+ FVL+DGW L+V +L+ S+
Sbjct: 207 GMMMLPPMMISLPFKVLVFVLVDGWYLIVRSLILSY 242


>gi|157961199|ref|YP_001501233.1| flagellar biosynthesis protein FliP [Shewanella pealeana ATCC
           700345]
 gi|157846199|gb|ABV86698.1| flagellar biosynthetic protein FliP [Shewanella pealeana ATCC
           700345]
          Length = 249

 Score =  168 bits (425), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 93/240 (38%), Positives = 145/240 (60%), Gaps = 8/240 (3%)

Query: 9   LFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIF---TILSIAPILLIMVTCFPRF 65
           L L  P   FA++ +   + +      ST    T  I    T LS  P ++IM+T F R 
Sbjct: 13  LCLAAPA-AFAENGILPAVTVSTGADGSTQYSVTMQILLLMTALSFIPAMVIMLTSFTRI 71

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
           I+V SILR  +G+   P N V+I +++FMTF++MSP  D+  +  +QP +   +    A 
Sbjct: 72  IVVLSILRQAIGLQQTPSNQVLIGISMFMTFFIMSPVFDKIYDQAVQPYIEQGMPLQDAF 131

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
            +   P   FM   TR  DL  F+++  S ++N  I + +     ++IP+F+ SEL+ +F
Sbjct: 132 TKGQGPLKDFMLAQTRLTDLDTFIEI--SGYQN--INEPEDAPMTVIIPAFITSELKTAF 187

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +IGF++ +PFL++D++VA+I+MAMGMMML P  +SLPFK++ FVL+DGWSL++  L  SF
Sbjct: 188 QIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVMGTLANSF 247


>gi|152990381|ref|YP_001356103.1| flagellar transport protein FliP [Nitratiruptor sp. SB155-2]
 gi|151422242|dbj|BAF69746.1| flagellar transport protein FliP [Nitratiruptor sp. SB155-2]
          Length = 236

 Score =  168 bits (425), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 91/206 (44%), Positives = 146/206 (70%), Gaps = 5/206 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   +FTILS+AP +LI +T F R +IV  +LR  +G+   PPN VII+L+LF+TF++M
Sbjct: 35  LKILALFTILSLAPAILITMTSFTRIVIVLGLLRQALGIPQSPPNQVIIALSLFLTFFIM 94

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P  D+     +QP M +++ +  A++    P   F+ NNT++++L LF+D+  ++ ++ 
Sbjct: 95  KPVFDQIYVDAVQPYMQHKLNDMQAVEAAMRPIKKFLVNNTQKEELKLFLDINKTTPKDY 154

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
               ND I   +L+P+F++SE++ +FEI F+I LPFL+IDM+VA+I+M+MGMMM+PP  I
Sbjct: 155 ----ND-ISLSVLLPAFLVSEIKIAFEIAFVIFLPFLVIDMLVASILMSMGMMMIPPMMI 209

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK+I F+L DGW LL++ L+K +
Sbjct: 210 SLPFKLILFILSDGWELLIKALIKGY 235


>gi|302878289|ref|YP_003846853.1| flagellar biosynthetic protein FliP [Gallionella capsiferriformans
           ES-2]
 gi|302581078|gb|ADL55089.1| flagellar biosynthetic protein FliP [Gallionella capsiferriformans
           ES-2]
          Length = 249

 Score =  168 bits (425), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 91/206 (44%), Positives = 142/206 (68%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++T  I T LS  P +L+M+T F R IIV S+LR+ +G  + PPN V+I L+LF+TF++M
Sbjct: 46  LQTLLILTSLSFLPAMLLMMTSFTRIIIVLSMLRSALGTQASPPNQVLIGLSLFLTFFIM 105

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP  D+       P   N+I    A+++   P   FM   TR+ DL+LF+ +++S     
Sbjct: 106 SPVFDKIYTDAYLPYSENRIELQEAVEKGVIPLKTFMLRQTRQADLALFVKISNSD---- 161

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           ++   + +  R+L+P+++ SEL+ +F+IGF++ +PFLIIDM+VA+I+M+MGMMML P+ I
Sbjct: 162 ELQSAEEVPMRLLVPAYVTSELKTAFQIGFVVFIPFLIIDMVVASILMSMGMMMLSPSII 221

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL DGW+LL+ +L +SF
Sbjct: 222 SLPFKIMLFVLADGWNLLIGSLAQSF 247


>gi|71906402|ref|YP_283989.1| flagellar biosynthesis protein FliP [Dechloromonas aromatica RCB]
 gi|71846023|gb|AAZ45519.1| Flagellar transport protein FliP [Dechloromonas aromatica RCB]
          Length = 248

 Score =  168 bits (425), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 96/229 (41%), Positives = 149/229 (65%), Gaps = 6/229 (2%)

Query: 19  AKSSLHDVMNIPADLSISTW--IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
           A   L  V + PA    +T+   ++T  + T L+  P +++M+T F R +IV S+LR  +
Sbjct: 22  AAGGLPAVTSTPAAGGGTTYSLTIQTLLLMTALTFIPAIVLMMTGFTRIVIVLSLLRHAL 81

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G  + PPN V++ L+LF+TF+VMSP L++       PL  N+I    A +R A P   FM
Sbjct: 82  GTQTAPPNQVVVGLSLFLTFFVMSPVLEKVYTDAYVPLSENKINIMQAGERAAIPMRSFM 141

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
              TRE DL+LF  +A    +   I   +    RIL+P+F+ISEL+ +F+IGF++ +PFL
Sbjct: 142 LKQTRESDLALFAGIA----KIDKIETPEDTPLRILVPAFVISELKTAFQIGFILFIPFL 197

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +IDM+VA+++M+MGMMM+ P  ++LPFK++ FVL+DGW L++ +LV+SF
Sbjct: 198 VIDMVVASLLMSMGMMMMSPVMVALPFKLMLFVLVDGWHLVIGSLVQSF 246


>gi|212634377|ref|YP_002310902.1| flagellar biosynthesis protein FliP [Shewanella piezotolerans WP3]
 gi|212555861|gb|ACJ28315.1| Flagellar biosynthetic protein FliP [Shewanella piezotolerans WP3]
          Length = 249

 Score =  167 bits (424), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 93/247 (37%), Positives = 149/247 (60%), Gaps = 8/247 (3%)

Query: 2   IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIF---TILSIAPILLIM 58
           + +   AL L++P  V A++ +   + +      ST    T  I    T LS  P  +IM
Sbjct: 6   VLFGGLALSLISPT-VLAETGILPAVTVSTGADGSTQYSVTMQILLLMTALSFIPAAVIM 64

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R I+V SILR  +G+   P N ++I +++FMTF++MSP  D+  E  ++P +   
Sbjct: 65  LTSFTRIIVVLSILRQAIGLQQAPSNQILIGISMFMTFFIMSPVFDKIYEQAVKPYIEQG 124

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           +    A      P   FM + TR  DL  F+++  S ++N  I + +     ++IP+F+ 
Sbjct: 125 MPIQDAFNTGKGPLKDFMLSQTRLTDLDTFIEI--SGYQN--INEPEDAPMSVIIPAFIT 180

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P  +SLPFK++ FVL+DGWSL++
Sbjct: 181 SELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVM 240

Query: 239 ENLVKSF 245
             L  SF
Sbjct: 241 GTLANSF 247


>gi|77359751|ref|YP_339326.1| flagellar biosynthesis protein FliP [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874662|emb|CAI85883.1| flagellar biosynthesis [Pseudoalteromonas haloplanktis TAC125]
          Length = 246

 Score =  167 bits (424), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 83/206 (40%), Positives = 131/206 (63%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   I T LS  P  +IM+T F R I+V +ILR  +G+   P N V++ ++LF++ ++M
Sbjct: 41  LQVLAIMTALSFIPAAIIMMTSFTRIIVVLAILRQAIGLQQTPSNQVLLGMSLFLSIFIM 100

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +P   +  E  I+P ++ Q+T   A++   EP   FM +  R KDL  F  +A     ++
Sbjct: 101 APIYQQVNERAIEPYLSEQVTSMEALELAKEPMKAFMLSQVRIKDLETFAKIAGYDQLDS 160

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                +     +LIP+F+ SEL+ +F IGF+  +PFLI+D++VA+++MAMGMMML P  +
Sbjct: 161 P----EATPLIVLIPAFVTSELQTAFIIGFMFFIPFLIVDLVVASVLMAMGMMMLSPMIV 216

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGWSL++  L KSF
Sbjct: 217 SLPFKIMLFVLVDGWSLVMGTLAKSF 242


>gi|256833225|ref|YP_003161952.1| flagellar biosynthetic protein FliP [Jonesia denitrificans DSM
           20603]
 gi|256686756|gb|ACV09649.1| flagellar biosynthetic protein FliP [Jonesia denitrificans DSM
           20603]
          Length = 276

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 86/210 (40%), Positives = 137/210 (65%), Gaps = 5/210 (2%)

Query: 36  STWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMT 95
           ++ IV   GI T+LS+AP LL+++T F + ++V SI R  +G+ SVPPN V+  +ALF++
Sbjct: 71  TSSIVVLLGI-TLLSVAPSLLLLMTSFTKILVVLSITRNALGLQSVPPNQVLAGIALFLS 129

Query: 96  FYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSS 155
            ++M P L    ++ +QP +   +    A+ + + P   FM  +TRE D++L    A + 
Sbjct: 130 IFIMGPVLTSINDIAVQPFLAGDLDFAGALDQGSGPLRDFMLAHTRESDIALITRAAEAE 189

Query: 156 HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
           +          +    LIP+F++SELR +F IGF+I LPFL+ID++++  +M++GMMMLP
Sbjct: 190 NP----ADPQSVPLMTLIPAFLLSELRAAFIIGFVIFLPFLVIDLVISASLMSLGMMMLP 245

Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           P  ISLPFK++ FVL+DGWSL+V  L+ S+
Sbjct: 246 PIIISLPFKLLLFVLVDGWSLIVTALIGSY 275


>gi|294084391|ref|YP_003551149.1| flagellar biosynthetic protein FliP [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663964|gb|ADE39065.1| flagellar biosynthetic protein FliP [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 261

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 85/208 (40%), Positives = 135/208 (64%), Gaps = 8/208 (3%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   + T L++ P L++ +T F R IIV SILR  MG    PPN V++++ALF+TF++M
Sbjct: 57  LQILALMTALTVLPSLVLGMTSFTRIIIVLSILRQAMGTQQTPPNQVLVAIALFLTFFIM 116

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +PT  +  +M + P M   +   TA+         F+  NTR  DL +F +MA       
Sbjct: 117 APTFTQLNDMALSPYMEGTMPMETALSDGTNIMKDFLVQNTRVTDLVMFTEMAG------ 170

Query: 160 DITKND--HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
           D T  D   +   +L+P+F+ SEL+ +F+IGFL+ LPFL+IDM++A+I+M++GMMML P 
Sbjct: 171 DTTYEDPKDVPLTVLLPAFITSELKTAFQIGFLLFLPFLVIDMVIASILMSLGMMMLSPM 230

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
            ++LPFK++ FVL+DGW++ V +LV ++
Sbjct: 231 LVALPFKLLLFVLVDGWAMTVGSLVATY 258


>gi|89069801|ref|ZP_01157136.1| flagellar biosynthetic protein FliP [Oceanicola granulosus
           HTCC2516]
 gi|89044602|gb|EAR50718.1| flagellar biosynthetic protein FliP [Oceanicola granulosus
           HTCC2516]
          Length = 246

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 86/219 (39%), Positives = 136/219 (62%), Gaps = 4/219 (1%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
           +++  D S++T  ++   + T+LS+ P L IM+TCFP  + V +ILR  +G+   PPN++
Sbjct: 31  LSLGEDGSLATRSIQLLLLVTLLSLVPGLAIMITCFPFIVTVLAILRQAIGLQQSPPNML 90

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           I++LALF+T++VM P    + E G  PL   + +   A      PF  FM        L+
Sbjct: 91  IVTLALFLTYFVMEPVFRAAWEAGGAPLAAGEASLEEAFAGAIAPFRTFMAARVDPSALA 150

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
              D+  S+               +L+PSF++SE+ R+F++GFL+ LPFLIID++VA ++
Sbjct: 151 SLADLRGSAPPPAPEAAP----LSVLVPSFLLSEIERAFQVGFLLFLPFLIIDLVVAAVL 206

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+MGMMM+PP  +SLPFK+ FFV+ DGW+L+ E LV+ +
Sbjct: 207 MSMGMMMVPPAIVSLPFKLAFFVVADGWTLVAEALVRGY 245


>gi|283834476|ref|ZP_06354217.1| flagellar biosynthetic protein FliP [Citrobacter youngae ATCC
           29220]
 gi|291070023|gb|EFE08132.1| flagellar biosynthetic protein FliP [Citrobacter youngae ATCC
           29220]
          Length = 252

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 85/200 (42%), Positives = 129/200 (64%), Gaps = 6/200 (3%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T++ I P L++M+TCF RFIIV S+LR  +G+   PPN ++I +AL +T  VM P   
Sbjct: 52  LMTLVGILPTLVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWI 111

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              +  + P  N+QIT   A+   A P   FM   T +K ++  M +A++     D    
Sbjct: 112 NIYDHAVVPFENDQITLPDALSTAASPLKRFMLAQTNKKAIAQIMTIANAKGNAADQ--- 168

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
              +  I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P  +SLPFK
Sbjct: 169 ---DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFK 225

Query: 225 VIFFVLIDGWSLLVENLVKS 244
           ++ FVLIDGW+L V  L  S
Sbjct: 226 LMLFVLIDGWALTVGTLTSS 245


>gi|317406210|gb|EFV86458.1| flagellar biosynthetic protein FliP [Achromobacter xylosoxidans
           C54]
          Length = 168

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/170 (46%), Positives = 115/170 (67%), Gaps = 4/170 (2%)

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVF 135
           MG    PPN V+I LALF+TFY MSP  D+      +PL    I    A++R A P   F
Sbjct: 1   MGTAMSPPNHVLIGLALFLTFYTMSPVFDKIYTDAYKPLSEGSIQFEAAVERAAGPLRTF 60

Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195
           M + TRE DL+LF ++A    +   +     +  RIL+P+F+ SEL+ +F+IGF I +PF
Sbjct: 61  MLHQTRENDLALFANLA----KQPALEDPSQVPLRILVPAFITSELKTAFQIGFTIFIPF 116

Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LIID++VA+++MA+GMMM+PP +++LPFK++ FVL DGW+LL+ +L +SF
Sbjct: 117 LIIDLVVASVLMALGMMMVPPVTVALPFKLMLFVLADGWNLLMGSLAQSF 166


>gi|313905144|ref|ZP_07838513.1| flagellar biosynthetic protein FliP [Eubacterium cellulosolvens 6]
 gi|313470047|gb|EFR65380.1| flagellar biosynthetic protein FliP [Eubacterium cellulosolvens 6]
          Length = 224

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 81/200 (40%), Positives = 128/200 (64%), Gaps = 4/200 (2%)

Query: 46  FTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDR 105
            T++++ P ++IM+T F R II+ S  R  +G+   PPN+V++ ++LF+T ++M+PT+ +
Sbjct: 28  LTLVALLPSIVIMMTSFVRTIIILSFTRNALGVQQSPPNMVLVGISLFLTLFIMTPTITQ 87

Query: 106 SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165
             E   QP    +IT+  AI+R+  P   FM  NT  K L+ F+ MA +      +    
Sbjct: 88  INEEAYQPYQRGEITQEQAIERMQVPMKEFMLKNTETKTLNKFVKMAKTKK----LKNPK 143

Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225
                I+ P+FM SEL+R F  GFLI LPFL++D++VAT +M+MGM M+PPT +S+PFK+
Sbjct: 144 DYPLTIVTPAFMTSELKRGFMAGFLIYLPFLLLDVVVATTLMSMGMAMMPPTMVSMPFKL 203

Query: 226 IFFVLIDGWSLLVENLVKSF 245
           + FV ++GW LL   ++ SF
Sbjct: 204 LLFVSVNGWELLFSTIISSF 223


>gi|254499102|ref|ZP_05111792.1| flagellar biosynthesis protein FliP [Legionella drancourtii LLAP12]
 gi|254351641|gb|EET10486.1| flagellar biosynthesis protein FliP [Legionella drancourtii LLAP12]
          Length = 241

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 87/206 (42%), Positives = 137/206 (66%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++ F + T+LS+AP +LIM++ F R ++V S+LR  +G+   PPN VIISL+LF+T + M
Sbjct: 39  LQAFAVLTVLSLAPSILIMLSSFTRIVVVLSMLRNALGLQQTPPNTVIISLSLFLTLFTM 98

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P           P   +Q+   T++    +P   FM   TREKD+++ + +A     ++
Sbjct: 99  MPVAKTIYNEAYLPYEAHQMNTETSLNNAIKPLKKFMLQQTREKDMNVILQLAKEPMPSS 158

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                + I++  LIP+F++SEL+ +F+IGF+I LPFL++D+IV+ I+M +GMMM+PP SI
Sbjct: 159 A----EKIKFYQLIPAFLLSELQTAFQIGFMIFLPFLLVDLIVSGILMTVGMMMMPPMSI 214

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLP K++ F+LIDGW L+V+ LV SF
Sbjct: 215 SLPVKILLFILIDGWDLVVQALVGSF 240


>gi|298346006|ref|YP_003718693.1| flagellar biosynthesis protein FliP [Mobiluncus curtisii ATCC
           43063]
 gi|298236067|gb|ADI67199.1| flagellar biosynthesis protein FliP [Mobiluncus curtisii ATCC
           43063]
          Length = 422

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 86/214 (40%), Positives = 139/214 (64%), Gaps = 5/214 (2%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D + ST ++  F + T+LSIAP LL+M+T F +  IV ++ R  MG+  +PPN VI  LA
Sbjct: 213 DKAPSTAVL-VFLLITVLSIAPSLLLMMTSFTKIFIVLAMARNAMGLNQIPPNQVISGLA 271

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           +F++ ++MSPT+    +  +QP M+ +I      +   +P   FM   TRE+D++L   M
Sbjct: 272 IFLSLFIMSPTITSIWQDAVQPYMDGKIQVQDMFKLAEKPVREFMGPLTREEDIAL---M 328

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
             ++ R  +    +   +  L+P+FMISE+R +F IGF++ +PFL+ID++V   +M+MGM
Sbjct: 329 TRAADR-PNPPSLEETPFTTLVPAFMISEVRSAFIIGFVVFIPFLVIDLVVGAALMSMGM 387

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMLPP  +S+PFKV+ FV++DGW LL + L+ ++
Sbjct: 388 MMLPPVMVSMPFKVLLFVMVDGWGLLTKTLIGTY 421


>gi|168704086|ref|ZP_02736363.1| flagellar biosynthetic protein FliP [Gemmata obscuriglobus UQM
           2246]
          Length = 224

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 86/227 (37%), Positives = 139/227 (61%), Gaps = 7/227 (3%)

Query: 21  SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
             L D +N P  L+       V+T  +  + ++ P  L+ +TCF R +IV S +R G+G 
Sbjct: 2   GDLADFVNGPNGLNFQNLSPPVQTALMLGLSALLPAALMTMTCFTRVVIVLSFVRQGLGA 61

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
            +VPPNLV+  LALF+T +VM PT     +   QP +  QIT   A +   + +  FM  
Sbjct: 62  QNVPPNLVLTGLALFITLFVMQPTFAEIDQKAYQPYLQKQITGPQAFKTGTDIYKQFMLR 121

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
            TR++DL+LF+ +  S H    + K +   +  ++P+F+ISEL+ +F +GF I LPFL++
Sbjct: 122 QTRKQDLALFLHL--SKHT---VEKAEDAPFLTVVPAFLISELKTAFIMGFCIYLPFLMV 176

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           D++V++++ +MGM+M+PP +IS PFK++ FVL DGW L+   +  S+
Sbjct: 177 DLVVSSVLTSMGMVMMPPVTISAPFKILLFVLADGWHLVTYAIALSY 223


>gi|167623389|ref|YP_001673683.1| flagellar biosynthesis protein FliP [Shewanella halifaxensis
           HAW-EB4]
 gi|167353411|gb|ABZ76024.1| flagellar biosynthetic protein FliP [Shewanella halifaxensis
           HAW-EB4]
          Length = 249

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 84/201 (41%), Positives = 131/201 (65%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T LS  P ++IM+T F R I+V SILR  +G+   P N V+I +++FMTF++MSP  D
Sbjct: 51  LMTALSFIPAMVIMLTSFTRIIVVLSILRQAIGLQQTPSNQVLIGISMFMTFFIMSPVFD 110

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +     +QP +   +    A      P   FM   TR  DL+ F+++  S ++N  I + 
Sbjct: 111 KIYVQAVQPYIEQGMPLQDAFTTGQGPLKDFMLAQTRNSDLNTFIEI--SGYQN--INEP 166

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           +     ++IP+F+ SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P  +SLPFK
Sbjct: 167 EDAPMTVIIPAFITSELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFK 226

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGWSL++  L  SF
Sbjct: 227 IMLFVLVDGWSLVMGTLANSF 247


>gi|315654594|ref|ZP_07907500.1| flagellar biosynthetic protein FliP [Mobiluncus curtisii ATCC
           51333]
 gi|315491058|gb|EFU80677.1| flagellar biosynthetic protein FliP [Mobiluncus curtisii ATCC
           51333]
          Length = 422

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 86/214 (40%), Positives = 139/214 (64%), Gaps = 5/214 (2%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D + ST ++  F + T+LSIAP LL+M+T F +  IV ++ R  MG+  +PPN VI  LA
Sbjct: 213 DKAPSTAVL-VFLLITVLSIAPSLLLMMTSFTKIFIVLAMARNAMGLNQIPPNQVISGLA 271

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           +F++ ++MSPT+    +  +QP M+ +I      +   +P   FM   TRE+D++L   M
Sbjct: 272 IFLSLFIMSPTITSIWQDAVQPYMDGKIQVQDMFKLAEKPVREFMGPLTREEDIAL---M 328

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
             ++ R  +    +   +  L+P+FMISE+R +F IGF++ +PFL+ID++V   +M+MGM
Sbjct: 329 TRAADR-PNPPSLEETPFTTLVPAFMISEVRSAFIIGFVVFIPFLVIDLVVGAALMSMGM 387

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMLPP  +S+PFKV+ FV++DGW LL + L+ ++
Sbjct: 388 MMLPPVMVSMPFKVLLFVMVDGWGLLTKTLIGTY 421


>gi|315657501|ref|ZP_07910383.1| flagellar biosynthetic protein FliP [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315491973|gb|EFU81582.1| flagellar biosynthetic protein FliP [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 422

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 86/214 (40%), Positives = 139/214 (64%), Gaps = 5/214 (2%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D + ST ++  F + T+LSIAP LL+M+T F +  IV ++ R  MG+  +PPN VI  LA
Sbjct: 213 DKAPSTAVL-VFLLITVLSIAPSLLLMMTSFTKIFIVLAMARNAMGLNQIPPNQVISGLA 271

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           +F++ ++MSPT+    +  +QP M+ +I      +   +P   FM   TRE+D++L   M
Sbjct: 272 IFLSLFIMSPTITSIWQDAVQPYMDGKIQVQDMFKLAEKPVREFMGPLTREEDIAL---M 328

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
             ++ R  +    +   +  L+P+FMISE+R +F IGF++ +PFL+ID++V   +M+MGM
Sbjct: 329 TRAADR-PNPPSLEETPFTTLVPAFMISEVRSAFIIGFVVFIPFLVIDLVVGAALMSMGM 387

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMLPP  +S+PFKV+ FV++DGW LL + L+ ++
Sbjct: 388 MMLPPVMVSMPFKVLLFVMVDGWGLLTKTLIGTY 421


>gi|117928065|ref|YP_872616.1| flagellar biosynthesis protein FliP [Acidothermus cellulolyticus
           11B]
 gi|117648528|gb|ABK52630.1| flagellar biosynthetic protein FliP [Acidothermus cellulolyticus
           11B]
          Length = 318

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 86/201 (42%), Positives = 138/201 (68%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T+L++AP  LI+ T F + I+V S+ R  +G+ ++PPN V++ LALF++ +VMSPTL 
Sbjct: 121 LMTVLAVAPAALILTTSFTKVIVVLSLTRNALGLQTIPPNQVLVGLALFLSLFVMSPTLS 180

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              +  +QP +   IT + A     +P   FM N TR+ DL+L +D   +SH++   +  
Sbjct: 181 AMNKDAVQPYLKGHITASQAYDAGVQPLKTFMLNQTRKDDLALMID---ASHQSRPASPK 237

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D +    L+P+F++SELR +F IGF+I +PFLIID++V++ +M+MGMMMLPP+ ISLPFK
Sbjct: 238 D-VSMTTLVPAFVLSELRAAFIIGFVIFVPFLIIDLVVSSSLMSMGMMMLPPSIISLPFK 296

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ F+++DGW L+   L+ S+
Sbjct: 297 LLLFIMVDGWGLIARTLLSSY 317


>gi|323975949|gb|EGB71043.1| FliP family protein [Escherichia coli TW10509]
          Length = 250

 Score =  166 bits (419), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 83/200 (41%), Positives = 128/200 (64%), Gaps = 6/200 (3%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T++ + P +++M+TCF RFIIV S+LR  +G+   PPN ++I +AL +T  VM P   
Sbjct: 50  LMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTLLVMRPVWL 109

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              +  + P  N+QIT T A+   A P   FM   T +K ++  M +  +     D    
Sbjct: 110 NIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKGNAADQ--- 166

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
              +  I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P  +SLPFK
Sbjct: 167 ---DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFK 223

Query: 225 VIFFVLIDGWSLLVENLVKS 244
           ++ FVLIDGWSL +  L  S
Sbjct: 224 LMLFVLIDGWSLTIGTLTTS 243


>gi|15645308|ref|NP_207479.1| flagellar biosynthesis protein FliP [Helicobacter pylori 26695]
 gi|4580427|gb|AAD14890.2| flagellar biosynthetic protein (fliP) [Helicobacter pylori 26695]
          Length = 153

 Score =  166 bits (419), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 78/152 (51%), Positives = 114/152 (75%), Gaps = 4/152 (2%)

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           +TF++M P+L ++ + GI+P M+ +I+ T A ++ A PF  FM  NTREKDL+LF  + +
Sbjct: 3   LTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRN 62

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
             +  T     D +   +LIP+FMISEL+ +F+IGFL+ LPFL+IDM++++I+MAMGMMM
Sbjct: 63  LPNPKTP----DEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMM 118

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LPP  ISLPFK++ F+L+DG++LL ENLV SF
Sbjct: 119 LPPVMISLPFKILVFILVDGFNLLTENLVASF 150


>gi|327254531|gb|EGE66147.1| flagellar biosynthetic protein FliP [Escherichia coli STEC_7v]
          Length = 250

 Score =  166 bits (419), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 83/200 (41%), Positives = 128/200 (64%), Gaps = 6/200 (3%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T++ + P +++M+TCF RFIIV S+LR  +G+   PPN ++I +AL +T  VM P   
Sbjct: 50  LMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTLLVMRPVWL 109

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              +  + P  N+QIT T A+   A P   FM   T +K ++  M +  +     D    
Sbjct: 110 NIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKGNAADQ--- 166

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
              +  I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P  +SLPFK
Sbjct: 167 ---DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFK 223

Query: 225 VIFFVLIDGWSLLVENLVKS 244
           ++ FVLIDGWSL +  L  S
Sbjct: 224 LMLFVLIDGWSLTIGTLTTS 243


>gi|315127309|ref|YP_004069312.1| flagellar biosynthesis protein FliP [Pseudoalteromonas sp. SM9913]
 gi|315015823|gb|ADT69161.1| flagellar biosynthesis protein FliP [Pseudoalteromonas sp. SM9913]
          Length = 246

 Score =  166 bits (419), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 82/206 (39%), Positives = 131/206 (63%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   I T +S  P  +IM+T F R I+V +ILR  +G+   P N V++ ++LF++ ++M
Sbjct: 41  LQVLAIMTAMSFIPAAIIMMTSFTRIIVVLAILRQAIGLQQTPSNQVLLGMSLFLSIFIM 100

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +P  ++  E  I+P ++ Q+T   A+    EP   FM +  R KDL  F  +A     ++
Sbjct: 101 APIYEQINERAIEPYLSEQVTSLEALDLAKEPMKAFMLSQVRIKDLETFAKIAGYDQLDS 160

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                +     +LIP+F+ SEL+ +F IGF+  +PFLI+D++VA+++MAMGMMML P  +
Sbjct: 161 P----EATPMVVLIPAFVTSELQTAFIIGFMFFIPFLIVDLVVASVLMAMGMMMLSPMIV 216

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGWSL++  L KSF
Sbjct: 217 SLPFKIMLFVLVDGWSLVMGTLAKSF 242


>gi|319790413|ref|YP_004152046.1| flagellar biosynthetic protein FliP [Thermovibrio ammonificans
           HB-1]
 gi|317114915|gb|ADU97405.1| flagellar biosynthetic protein FliP [Thermovibrio ammonificans
           HB-1]
          Length = 232

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 86/199 (43%), Positives = 141/199 (70%), Gaps = 5/199 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T+L++ P LLI +T F R +I+ S+LR  +G    PPN V+I+L+LF+TF+ M+PT ++ 
Sbjct: 38  TLLAVVPSLLIALTSFTRIVIILSLLRHALGTPQTPPNQVVIALSLFLTFFTMAPTFEKI 97

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
            +  ++P +N QIT   A++R + P   FM +NTR++DL LF+D+     RN      + 
Sbjct: 98  DKEALKPYLNGQITAVEAVERASRPLKEFMLHNTRKEDLKLFLDI-----RNERPKGPEE 152

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
           + +  L+P+FM+SE++ +FE  F+I LPF++ID++VA+I+M+MGMMM+PP  +SLPFK+I
Sbjct: 153 VSFVTLVPAFMVSEIKTAFEFVFVIFLPFMVIDLLVASILMSMGMMMIPPMMLSLPFKLI 212

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FV+  GW LL+++++ S+
Sbjct: 213 LFVVSGGWELLIKSIIVSY 231


>gi|300817291|ref|ZP_07097509.1| flagellar biosynthetic protein FliP [Escherichia coli MS 107-1]
 gi|300530267|gb|EFK51329.1| flagellar biosynthetic protein FliP [Escherichia coli MS 107-1]
          Length = 276

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 83/200 (41%), Positives = 128/200 (64%), Gaps = 6/200 (3%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T++ + P +++M+TCF RFIIV S+LR  +G+   PPN ++I +AL +T  VM P   
Sbjct: 50  LMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWL 109

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              +  + P  N+QIT T A+   A P   FM   T +K ++  M +  +     D    
Sbjct: 110 NIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKGHAADQ--- 166

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
              +  I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P  +SLPFK
Sbjct: 167 ---DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFK 223

Query: 225 VIFFVLIDGWSLLVENLVKS 244
           ++ FVLIDGWSL +  L  S
Sbjct: 224 LMLFVLIDGWSLTIGTLTTS 243


>gi|91792694|ref|YP_562345.1| flagellar biosynthesis protein FliP [Shewanella denitrificans
           OS217]
 gi|91714696|gb|ABE54622.1| flagellar biosynthetic protein FliP [Shewanella denitrificans
           OS217]
          Length = 247

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 83/199 (41%), Positives = 131/199 (65%), Gaps = 4/199 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T +S  P ++IM+T F R I+V SILR  +G+   P N V+I ++LFMTF++MSP  D+ 
Sbjct: 51  TAMSFIPAMVIMLTSFTRIIVVLSILRQALGLQQTPSNQVLIGISLFMTFFIMSPVFDKI 110

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
               ++P +N  +T   + +    P   FM +  R  DL  F+++  S ++   IT  + 
Sbjct: 111 YTEAVEPYINETMTLQQSYEVGKLPIKSFMLSQLRLTDLQTFVEI--SGYKG--ITSPEE 166

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
               ++IP+F+ SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P  +SLPFK++
Sbjct: 167 APMSVIIPAFITSELKTAFQIGFMLFIPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIM 226

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FVL+DGWSL++  L  SF
Sbjct: 227 LFVLVDGWSLVMGTLANSF 245


>gi|304390236|ref|ZP_07372190.1| flagellar biosynthesis protein FliP [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304326718|gb|EFL93962.1| flagellar biosynthesis protein FliP [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 422

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 86/214 (40%), Positives = 139/214 (64%), Gaps = 5/214 (2%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D + ST ++  F + T+LSIAP LL+M+T F +  IV ++ R  MG+  +PPN VI  LA
Sbjct: 213 DKAPSTAVL-VFLLITVLSIAPSLLLMMTSFTKIFIVLAMARNAMGLNQLPPNQVISGLA 271

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           +F++ ++MSPT+    +  +QP M+ +I      +   +P   FM   TRE+D++L   M
Sbjct: 272 IFLSLFIMSPTITSIWQDAVQPYMDGKIQVQDMFKLAEKPVREFMGPLTREEDIAL---M 328

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
             ++ R  +    +   +  L+P+FMISE+R +F IGF++ +PFL+ID++V   +M+MGM
Sbjct: 329 TRAADR-PNPPSLEETPFTTLVPAFMISEVRSAFIIGFVVFIPFLVIDLVVGAALMSMGM 387

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMLPP  +S+PFKV+ FV++DGW LL + L+ ++
Sbjct: 388 MMLPPVMVSMPFKVLLFVMVDGWGLLTKTLIGTY 421


>gi|323191516|gb|EFZ76777.1| flagellar biosynthetic protein FliP [Escherichia coli RN587/1]
          Length = 250

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 83/200 (41%), Positives = 128/200 (64%), Gaps = 6/200 (3%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T++ + P +++M+TCF RFIIV S+LR  +G+   PPN ++I +AL +T  VM P   
Sbjct: 50  LMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTLLVMRPIWL 109

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              +  + P  N+QIT T A+   A P   FM   T +K ++  M +  +     D    
Sbjct: 110 NIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKGNAADQ--- 166

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
              +  I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P  +SLPFK
Sbjct: 167 ---DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFK 223

Query: 225 VIFFVLIDGWSLLVENLVKS 244
           ++ FVLIDGWSL +  L  S
Sbjct: 224 LMLFVLIDGWSLTIGTLTTS 243


>gi|306813325|ref|ZP_07447518.1| flagellar biosynthesis protein FliP [Escherichia coli NC101]
 gi|305854088|gb|EFM54527.1| flagellar biosynthesis protein FliP [Escherichia coli NC101]
          Length = 250

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 83/200 (41%), Positives = 128/200 (64%), Gaps = 6/200 (3%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T++ + P +++M+TCF RFIIV S+LR  +G+   PPN ++I +AL +T  VM P   
Sbjct: 50  LMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTLLVMRPIWL 109

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              +  + P  N+QIT T A+   A P   FM   T +K ++  M +  +     D    
Sbjct: 110 NIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKGNAADQ--- 166

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
              +  I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P  +SLPFK
Sbjct: 167 ---DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFK 223

Query: 225 VIFFVLIDGWSLLVENLVKS 244
           ++ FVLIDGWSL +  L  S
Sbjct: 224 LMLFVLIDGWSLTIGTLTTS 243


>gi|218703506|ref|YP_002411025.1| flagellar biosynthesis protein FliP [Escherichia coli UMN026]
 gi|293403337|ref|ZP_06647428.1| fliP [Escherichia coli FVEC1412]
 gi|298378948|ref|ZP_06988829.1| fliP [Escherichia coli FVEC1302]
 gi|300898060|ref|ZP_07116429.1| flagellar biosynthetic protein FliP [Escherichia coli MS 198-1]
 gi|59889762|emb|CAH19117.1| Lateral flagellar export/assembly protein (FliP-like) [Escherichia
           coli]
 gi|218430603|emb|CAR11469.1| Lateral flagellar export/assembly protein, FliP-like [Escherichia
           coli UMN026]
 gi|284920026|emb|CBG33082.1| lateral flagellar export/assembly protein (FliP-like) [Escherichia
           coli 042]
 gi|291429190|gb|EFF02210.1| fliP [Escherichia coli FVEC1412]
 gi|298280061|gb|EFI21565.1| fliP [Escherichia coli FVEC1302]
 gi|300358238|gb|EFJ74108.1| flagellar biosynthetic protein FliP [Escherichia coli MS 198-1]
          Length = 250

 Score =  165 bits (418), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 83/200 (41%), Positives = 128/200 (64%), Gaps = 6/200 (3%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T++ + P +++M+TCF RFIIV S+LR  +G+   PPN ++I +AL +T  VM P   
Sbjct: 50  LMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPVWL 109

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              +  + P  N+QIT T A+   A P   FM   T +K ++  M +  +     D    
Sbjct: 110 NIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKGNAADQ--- 166

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
              +  I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P  +SLPFK
Sbjct: 167 ---DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFK 223

Query: 225 VIFFVLIDGWSLLVENLVKS 244
           ++ FVLIDGWSL +  L  S
Sbjct: 224 LMLFVLIDGWSLTIGTLTTS 243


>gi|51894127|ref|YP_076818.1| flagellar biosynthesis protein FliP [Symbiobacterium thermophilum
           IAM 14863]
 gi|51857816|dbj|BAD41974.1| flagellar biosynthesis protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 253

 Score =  165 bits (418), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 88/194 (45%), Positives = 130/194 (67%), Gaps = 4/194 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP ++I+ T F R I+VF  +RT +G+   PPN V+I LALF+T  VM PT     +  +
Sbjct: 62  APAIIILCTSFTRIIVVFGFIRTALGLQQTPPNQVLIGLALFLTAAVMMPTFSEINQTAV 121

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           QP +  +I +  AI+R A P   FM   TRE DL L ++++            + + +  
Sbjct: 122 QPYLAGEIDQVEAIERGALPLKAFMLRQTREADLGLMLEVSGQPAPE----GPEDVSFLT 177

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           ++P+F +SEL+ +F +GFLI LPF+IID+I A+++M++GMMM+PPT ISLPFKV+ FVL+
Sbjct: 178 VVPAFALSELKTAFTMGFLIYLPFIIIDLITASLMMSLGMMMVPPTLISLPFKVLLFVLV 237

Query: 232 DGWSLLVENLVKSF 245
           DGW L+VE+LV+SF
Sbjct: 238 DGWHLVVESLVRSF 251


>gi|256020209|ref|ZP_05434074.1| flagellar biosynthesis protein FliP [Shigella sp. D9]
 gi|260853448|ref|YP_003227339.1| putative lateral flagellar biosynthesis protein [Escherichia coli
           O26:H11 str. 11368]
 gi|260866394|ref|YP_003232796.1| putative lateral flagellar biosynthesis protein [Escherichia coli
           O111:H- str. 11128]
 gi|307315216|ref|ZP_07594795.1| flagellar biosynthetic protein FliP [Escherichia coli W]
 gi|332281371|ref|ZP_08393784.1| lateral flagellar export/assembly protein [Shigella sp. D9]
 gi|257752097|dbj|BAI23599.1| predicted lateral flagellar biosynthesis protein [Escherichia coli
           O26:H11 str. 11368]
 gi|257762750|dbj|BAI34245.1| predicted lateral flagellar biosynthesis protein [Escherichia coli
           O111:H- str. 11128]
 gi|306905397|gb|EFN35934.1| flagellar biosynthetic protein FliP [Escherichia coli W]
 gi|315059469|gb|ADT73796.1| Lateral flagellar export/assembly protein [Escherichia coli W]
 gi|323158013|gb|EFZ44114.1| flagellar biosynthetic protein FliP [Escherichia coli EPECa14]
 gi|323178514|gb|EFZ64092.1| flagellar biosynthetic protein FliP [Escherichia coli 1180]
 gi|323181527|gb|EFZ66947.1| flagellar biosynthetic protein FliP [Escherichia coli 1357]
 gi|323379973|gb|ADX52241.1| flagellar biosynthetic protein FliP [Escherichia coli KO11]
 gi|332103723|gb|EGJ07069.1| lateral flagellar export/assembly protein [Shigella sp. D9]
          Length = 250

 Score =  165 bits (418), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 83/200 (41%), Positives = 128/200 (64%), Gaps = 6/200 (3%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T++ + P +++M+TCF RFIIV S+LR  +G+   PPN ++I +AL +T  VM P   
Sbjct: 50  LMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWL 109

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              +  + P  N+QIT T A+   A P   FM   T +K ++  M +  +     D    
Sbjct: 110 NIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKGHAADQ--- 166

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
              +  I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P  +SLPFK
Sbjct: 167 ---DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFK 223

Query: 225 VIFFVLIDGWSLLVENLVKS 244
           ++ FVLIDGWSL +  L  S
Sbjct: 224 LMLFVLIDGWSLTIGTLTTS 243


>gi|170684182|ref|YP_001742352.1| flagellar biosynthesis protein FliP [Escherichia coli SMS-3-5]
 gi|170521900|gb|ACB20078.1| lateral flagellar export/assembly protein LfiP [Escherichia coli
           SMS-3-5]
          Length = 250

 Score =  165 bits (418), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 83/200 (41%), Positives = 128/200 (64%), Gaps = 6/200 (3%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T++ + P +++M+TCF RFIIV S+LR  +G+   PPN ++I +AL +T  VM P   
Sbjct: 50  LMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPVWL 109

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              +  + P  N+QIT T A+   A P   FM   T +K ++  M +  +     D    
Sbjct: 110 NIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKGNAADQ--- 166

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
              +  I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P  +SLPFK
Sbjct: 167 ---DLTIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFK 223

Query: 225 VIFFVLIDGWSLLVENLVKS 244
           ++ FVLIDGWSL +  L  S
Sbjct: 224 LMLFVLIDGWSLTIGTLTTS 243


>gi|293408348|ref|ZP_06652187.1| fliP [Escherichia coli B354]
 gi|291471526|gb|EFF14009.1| fliP [Escherichia coli B354]
          Length = 250

 Score =  165 bits (417), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 83/200 (41%), Positives = 128/200 (64%), Gaps = 6/200 (3%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T++ + P +++M+TCF RFIIV S+LR  +G+   PPN ++I +AL +T  VM P   
Sbjct: 50  LMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWL 109

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              +  + P  N+QIT T A+   A P   FM   T +K ++  M +  +     D    
Sbjct: 110 NIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKGNAADQ--- 166

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
              +  I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P  +SLPFK
Sbjct: 167 ---DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFK 223

Query: 225 VIFFVLIDGWSLLVENLVKS 244
           ++ FVLIDGWSL +  L  S
Sbjct: 224 LMLFVLIDGWSLTIGTLTTS 243


>gi|331671782|ref|ZP_08372578.1| flagellar biosynthetic protein FliP [Escherichia coli TA280]
 gi|331070771|gb|EGI42130.1| flagellar biosynthetic protein FliP [Escherichia coli TA280]
          Length = 250

 Score =  165 bits (417), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 83/200 (41%), Positives = 128/200 (64%), Gaps = 6/200 (3%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T++ + P +++M+TCF RFIIV S+LR  +G+   PPN ++I +AL +T  VM P   
Sbjct: 50  LMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWL 109

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              +  + P  N+QIT T A+   A P   FM   T +K ++  M +  +     D    
Sbjct: 110 NIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKGNAADQ--- 166

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
              +  I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P  +SLPFK
Sbjct: 167 ---DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFK 223

Query: 225 VIFFVLIDGWSLLVENLVKS 244
           ++ FVLIDGWSL +  L  S
Sbjct: 224 LMLFVLIDGWSLTIGTLTTS 243


>gi|256370973|ref|YP_003108797.1| flagellar biosynthetic protein FliP [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256007557|gb|ACU53124.1| flagellar biosynthetic protein FliP [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 229

 Score =  165 bits (417), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 78/200 (39%), Positives = 130/200 (65%), Gaps = 5/200 (2%)

Query: 46  FTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDR 105
            T+LS+AP LL++ T F   ++V SI R  +G+ + PPN V+  LALF++ +VM+PTL  
Sbjct: 34  LTVLSLAPTLLVLFTGFVEIVVVLSITRNALGLSTTPPNQVLAGLALFLSLFVMAPTLGI 93

Query: 106 SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165
                + P ++  I+   A+ R   P  ++M  +TR ++L+LF  + H +         D
Sbjct: 94  VEHQAVLPYLHGHISAVVALDRAEGPIKLWMLRHTRTQELALFDVVTHHAGVAPAAAPLD 153

Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225
            +     +P+F++SEL  +F +GF+I +PFL+ID++V++++M++GMMMLPPT +SLPFK+
Sbjct: 154 AV-----VPAFILSELHSAFVMGFIIYVPFLVIDLVVSSVLMSLGMMMLPPTLVSLPFKL 208

Query: 226 IFFVLIDGWSLLVENLVKSF 245
           + FVL+DGW+L+   L+ S 
Sbjct: 209 LLFVLVDGWTLVAHALLVSL 228


>gi|296282256|ref|ZP_06860254.1| flagellar biosynthesis protein FliP [Citromicrobium bathyomarinum
           JL354]
          Length = 258

 Score =  165 bits (417), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 91/241 (37%), Positives = 146/241 (60%), Gaps = 22/241 (9%)

Query: 24  HDVMNIPADLSISTWIVRTFG------------------IFTILSIAPILLIMVTCFPRF 65
           H    +P D + +  + R FG                  +  +L+  P +L+M+T F R 
Sbjct: 22  HAATAVPTDSAAAGALDRAFGELGGAGGEPLSLSLQLLLVMGLLTFLPAILLMMTSFTRI 81

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
           I+V +ILR  +G+   PPN V+I ++LF++ ++M+PTLDR     I+P    QI    AI
Sbjct: 82  IVVLAILRQALGLQQSPPNQVLIGISLFLSLFIMAPTLDRVNTAAIEPYSAGQINAEVAI 141

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
           +R    F  FM   TRE DL +F D+A++            + + IL+P+F+ SEL+ +F
Sbjct: 142 ERAGGEFHKFMIRQTRENDLQMFADIANAPK----FASPQDVPFSILLPAFVTSELKTAF 197

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +IGF++ LPFL+ID++V++++M++GMMM+ P  +SLPFK++ FVL+DGWSLL+ +L  SF
Sbjct: 198 QIGFMLFLPFLVIDLVVSSVLMSLGMMMMSPMLVSLPFKLLLFVLVDGWSLLMGSLASSF 257

Query: 246 I 246
           +
Sbjct: 258 V 258


>gi|283784010|ref|YP_003363875.1| lateral flagellar export/assembly protein [Citrobacter rodentium
           ICC168]
 gi|282947464|emb|CBG87011.1| lateral flagellar export/assembly protein [Citrobacter rodentium
           ICC168]
          Length = 252

 Score =  165 bits (417), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 84/200 (42%), Positives = 128/200 (64%), Gaps = 6/200 (3%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T++ + P L++M+TCF RFIIV S+LR  +G+   PPN ++I +AL +T  VM P   
Sbjct: 52  LMTLVGLLPTLVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALCLTMLVMRPIWL 111

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              +  + P  N+Q+T + A+   A P   FM   T +K ++  M +A       D    
Sbjct: 112 NIYDRAVVPFENDQMTLSDALSTAATPLKRFMLAQTNKKAMAQIMTIADVKGDAADQ--- 168

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
              +  I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P  +SLPFK
Sbjct: 169 ---DLTIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFK 225

Query: 225 VIFFVLIDGWSLLVENLVKS 244
           ++ FVLIDGWSL V  L  S
Sbjct: 226 LMLFVLIDGWSLTVGTLTSS 245


>gi|301646791|ref|ZP_07246645.1| flagellar biosynthetic protein FliP [Escherichia coli MS 146-1]
 gi|307136838|ref|ZP_07496194.1| flagellar biosynthesis protein FliP [Escherichia coli H736]
 gi|331640694|ref|ZP_08341841.1| flagellar biosynthetic protein FliP [Escherichia coli H736]
 gi|301075026|gb|EFK89832.1| flagellar biosynthetic protein FliP [Escherichia coli MS 146-1]
 gi|315616847|gb|EFU97464.1| flagellar biosynthetic protein FliP [Escherichia coli 3431]
 gi|331040068|gb|EGI12276.1| flagellar biosynthetic protein FliP [Escherichia coli H736]
          Length = 250

 Score =  165 bits (417), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 83/200 (41%), Positives = 127/200 (63%), Gaps = 6/200 (3%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T++ + P + +M+TCF RFIIV S+LR  +G+   PPN ++I +AL +T  VM P   
Sbjct: 50  LMTLVGLLPTMALMMTCFARFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWL 109

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              +  + P  N+QIT T A+   A P   FM   T +K ++  M +  +     D    
Sbjct: 110 NIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKGNAADQ--- 166

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
              +  I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P  +SLPFK
Sbjct: 167 ---DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFK 223

Query: 225 VIFFVLIDGWSLLVENLVKS 244
           ++ FVLIDGWSL +  L  S
Sbjct: 224 LMLFVLIDGWSLTIGTLTTS 243


>gi|284989540|ref|YP_003408094.1| flagellar biosynthetic protein FliP [Geodermatophilus obscurus DSM
           43160]
 gi|284062785|gb|ADB73723.1| flagellar biosynthetic protein FliP [Geodermatophilus obscurus DSM
           43160]
          Length = 277

 Score =  165 bits (417), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 79/199 (39%), Positives = 126/199 (63%), Gaps = 4/199 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T+LS+AP +L++ T F + I+V S+ R  +GM   PPN V+  +ALF+T +VM P     
Sbjct: 82  TVLSVAPAVLLLATSFTKIIVVLSLTRNALGMQMSPPNTVLTGIALFLTLFVMGPVFSEM 141

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
            E  +QP +N  +T T A      P   F+ +NTRE +LSL + ++         T    
Sbjct: 142 NETAVQPYLNGAMTMTQAYDVGVVPLREFLLDNTREDELSLMVGLSGEEAP----TDAAA 197

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
           +    L+P+F++SEL+ +F IG ++ +PFL++DM+V+  +M+MGMMM+PP  +SLPFK++
Sbjct: 198 VSMTTLVPAFVLSELKSAFIIGLVVFIPFLVLDMLVSAALMSMGMMMVPPVIVSLPFKLL 257

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FV++DGW+L+   LV S+
Sbjct: 258 LFVVVDGWALITTALVGSY 276


>gi|238762376|ref|ZP_04623347.1| Lateral flagellar export/assembly protein (FliP-like) [Yersinia
           kristensenii ATCC 33638]
 gi|238699361|gb|EEP92107.1| Lateral flagellar export/assembly protein (FliP-like) [Yersinia
           kristensenii ATCC 33638]
          Length = 248

 Score =  164 bits (416), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 85/194 (43%), Positives = 124/194 (63%), Gaps = 10/194 (5%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           PI+++M+TCF RFIIV +ILR  +G+   PPN V+  +AL +T  VM P   +  +  + 
Sbjct: 59  PIMMLMMTCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKVHQDAVI 118

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH--RNTDITKNDHIEYR 170
           P  N++IT   A+ R   P   +M   T  K L   MD+A  S   +  D+T        
Sbjct: 119 PFQNDEITLPQALARAEIPLKNYMLAQTSNKSLDQMMDIAQVSGEPQQQDLT-------- 170

Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230
           I+ P++++SEL+ +F+IGF+I +PFL+ID+IVA+I+MAMGMMML P  +SLPFK++ FVL
Sbjct: 171 IVTPAYLLSELKTAFQIGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVL 230

Query: 231 IDGWSLLVENLVKS 244
            DGW+L+V  L  S
Sbjct: 231 CDGWTLIVGTLTAS 244


>gi|188496180|ref|ZP_03003450.1| flagellar biosynthetic protein FliP [Escherichia coli 53638]
 gi|188491379|gb|EDU66482.1| flagellar biosynthetic protein FliP [Escherichia coli 53638]
          Length = 250

 Score =  164 bits (416), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 83/200 (41%), Positives = 127/200 (63%), Gaps = 6/200 (3%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T++ + P + +M+TCF RFIIV S+LR  +G+   PPN ++I +AL +T  VM P   
Sbjct: 50  LMTLVGLLPTMALMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWL 109

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              +  + P  N+QIT T A+   A P   FM   T +K ++  M +  +     D    
Sbjct: 110 NIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKGNAADQ--- 166

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
              +  I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P  +SLPFK
Sbjct: 167 ---DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFK 223

Query: 225 VIFFVLIDGWSLLVENLVKS 244
           ++ FVLIDGWSL +  L  S
Sbjct: 224 LMLFVLIDGWSLTIGTLTTS 243


>gi|71282453|ref|YP_268254.1| flagellar biosynthesis protein FliP [Colwellia psychrerythraea 34H]
 gi|71148193|gb|AAZ28666.1| flagellar biosynthetic protein FliP [Colwellia psychrerythraea 34H]
          Length = 252

 Score =  164 bits (416), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 85/199 (42%), Positives = 125/199 (62%), Gaps = 4/199 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T LS  P  +IM+T F R ++V +ILR   G+   P N VII L LFMT ++M+P  ++ 
Sbjct: 54  TALSFIPAAVIMMTSFTRIVVVMAILRQAFGLQQTPSNQVIIGLTLFMTLFIMTPVYNQI 113

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
               IQP ++  +T T AI     P   FM   TR KDL     MA        + +   
Sbjct: 114 DRTAIQPYLSENLTSTEAINLGKIPLRAFMLEQTRVKDLDTLAAMAGIDA----VDEPTD 169

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
           +   ++IP+F+ISEL+ +F+IGF++ +PFLIID++VA+I+MAMGMMML P  +SLPFK++
Sbjct: 170 LPMTVIIPAFIISELKTAFQIGFILFIPFLIIDLVVASILMAMGMMMLSPMIVSLPFKLM 229

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FVL+DGW+L++  +  S+
Sbjct: 230 LFVLVDGWNLVIGTIATSY 248


>gi|84514806|ref|ZP_01002169.1| Flagellar transport protein FliP [Loktanella vestfoldensis SKA53]
 gi|84510965|gb|EAQ07419.1| Flagellar transport protein FliP [Loktanella vestfoldensis SKA53]
          Length = 252

 Score =  164 bits (415), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 84/207 (40%), Positives = 139/207 (67%), Gaps = 4/207 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   + T+L+I P  L+ +T F R II+ SILR  MG    PPN V+IS+ALF+TFYVM
Sbjct: 49  LQILALMTVLTILPSFLLGITAFTRIIIILSILRQAMGTQQTPPNQVLISIALFLTFYVM 108

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +PT +      I P +  +++   AI+  A     F+  NTRE +L++F +MA     + 
Sbjct: 109 APTFEEIYSTTISPYLAGELSAVAAIEGSANIMRGFLILNTREAELAMFAEMAG----DA 164

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
               N+ + Y +L+P+F+ SEL+ +F+IGFL+ LPFL+ID+++A+I+M++GMMML P  +
Sbjct: 165 PYASNEDVPYAVLLPAFITSELKTAFQIGFLLFLPFLVIDLVIASILMSLGMMMLSPMLV 224

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +LPFK++ FVL+DGW++ + ++  +++
Sbjct: 225 ALPFKLLLFVLVDGWAMTIGSIASTYV 251


>gi|330809248|ref|YP_004353710.1| flagellar biosynthetic protein fliP [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327377356|gb|AEA68706.1| Putative flagellar biosynthetic protein fliP [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 240

 Score =  164 bits (415), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 82/206 (39%), Positives = 134/206 (65%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V    + T LS  P L+I +T F R I+V S+ R  +G+   PPN+V+I L++F+T + M
Sbjct: 38  VSIVALLTALSFLPFLVISLTTFTRNIVVLSLARQALGLQQTPPNIVLIVLSMFLTLFAM 97

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +PTL+++ + GI+P + N++    A  +   P   FM   T E+DL L  ++A       
Sbjct: 98  APTLEKAYDAGIKPFLANKVGLDGAALQGWVPIRDFMIRQTHEEDLRLIYELAKDPLPQA 157

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                + +    L+P+FM+SEL+ +F+IGF+I LPFLIID++VA+I+M++GM+M+PP +I
Sbjct: 158 P----EGLSPVKLVPAFMLSELKLAFQIGFMIFLPFLIIDLVVASILMSLGMIMVPPITI 213

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLP K++ F+LIDGW L+ + L+++ 
Sbjct: 214 SLPLKIMLFLLIDGWGLIAQTLMRNL 239


>gi|331645397|ref|ZP_08346501.1| flagellar biosynthetic protein FliP [Escherichia coli M605]
 gi|331045559|gb|EGI17685.1| flagellar biosynthetic protein FliP [Escherichia coli M605]
          Length = 250

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 83/200 (41%), Positives = 127/200 (63%), Gaps = 6/200 (3%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T++ + P +++M+TCF R IIV S+LR  +G+   PPN ++I +AL +T  VM P   
Sbjct: 50  LMTLVGLLPTMVLMMTCFTRLIIVLSLLRQALGLQQTPPNRILIGIALSLTLLVMRPIWL 109

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              +  I P  N+QIT T A+   A P   FM   T +K ++  M +  +     D    
Sbjct: 110 NIYDHAIVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKGNAADQ--- 166

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
              +  I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P  +SLPFK
Sbjct: 167 ---DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFK 223

Query: 225 VIFFVLIDGWSLLVENLVKS 244
           ++ FVLIDGWSL +  L  S
Sbjct: 224 LMLFVLIDGWSLTIGTLTTS 243


>gi|327537629|gb|EGF24341.1| flagellar biosynthesis protein FliP [Rhodopirellula baltica WH47]
          Length = 316

 Score =  164 bits (414), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 88/207 (42%), Positives = 135/207 (65%), Gaps = 8/207 (3%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T+LS+AP +L+M TC+ R IIV  +LR  +G+ S+PP+ V+ S+ALFMT +VM+P   
Sbjct: 108 LLTVLSLAPAILLMTTCYVRIIIVLGLLRQAIGLQSLPPSQVMTSVALFMTLFVMTPVWT 167

Query: 105 RSIEMGIQPLMNNQITET--TAIQRVAEPFWVFM----RNNTREKDLSLFMDMAHSSHRN 158
           R  +  I+P  + ++  T   A ++ A P   FM    R    E D+ LF    +     
Sbjct: 168 RVYDDAIKPYTDPEVEMTLEEAFEKGAIPIREFMAWQIREARNEDDVVLFY--GYMDPDA 225

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
              +  D +  R+L+P+F++SEL+ SF +GF I LPFLI+D++VA++ ++MGM+MLPP  
Sbjct: 226 VVPSTFDDVPLRVLLPAFILSELKTSFLMGFQIYLPFLIVDLVVASVTISMGMLMLPPAV 285

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           I+LPFK++ FVL+DGW L+VE L+ SF
Sbjct: 286 IALPFKLLLFVLVDGWRLVVEMLMNSF 312


>gi|332162918|ref|YP_004299495.1| Lateral flagellar export/assembly protein [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|325667148|gb|ADZ43792.1| Lateral flagellar export/assembly protein [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330862337|emb|CBX72497.1| flagellar biosynthetic protein fliP [Yersinia enterocolitica
           W22703]
          Length = 256

 Score =  164 bits (414), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 84/194 (43%), Positives = 124/194 (63%), Gaps = 10/194 (5%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           PI+++M+TCF RFIIV +ILR  +G+   PPN V+  +AL +T  VM P   +  +  + 
Sbjct: 67  PIMMLMMTCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKVHQDAVI 126

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH--RNTDITKNDHIEYR 170
           P  N++IT   A+ R   P   +M   T  K L   MD+A  S   +  D+T        
Sbjct: 127 PFQNDEITLPQALARAEVPLKNYMLAQTSTKSLDQMMDIAQVSGEPQQQDLT-------- 178

Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230
           ++ P++++SEL+ +F+IGF+I +PFL+ID+IVA+I+MAMGMMML P  +SLPFK++ FVL
Sbjct: 179 VVTPAYLLSELKTAFQIGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVL 238

Query: 231 IDGWSLLVENLVKS 244
            DGW+L+V  L  S
Sbjct: 239 CDGWTLIVGTLTAS 252


>gi|32471369|ref|NP_864362.1| flagellar biosynthesis protein FliP [Rhodopirellula baltica SH 1]
 gi|32443210|emb|CAD72041.1| flagellar biosynthetic protein fliP-putative tr FT ansporter of
           flagellar proteins [Rhodopirellula baltica SH 1]
          Length = 336

 Score =  164 bits (414), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 89/210 (42%), Positives = 137/210 (65%), Gaps = 14/210 (6%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T+LS+AP +L+M TC+ R IIV  +LR  +G+ S+PP+ V+ S+ALFMT +VM+P   
Sbjct: 128 LLTVLSLAPAILLMTTCYVRIIIVLGLLRQAIGLQSLPPSQVMTSVALFMTLFVMTPVWT 187

Query: 105 RSIEMGIQPLMNNQITET--TAIQRVAEPFWVFM----RNNTREKDLSLFMDMAHSSHRN 158
           R  +  I+P  + ++  T   A ++ A P   FM    R    E D+ LF       + +
Sbjct: 188 RVYDDAIKPYTDPEVEMTLEEAFEKGAIPIREFMAWQIREARNEDDVVLFY-----GYMD 242

Query: 159 TDI---TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
            D    +  D +  R+L+P+F++SEL+ SF +GF I LPFLI+D++VA++ ++MGM+MLP
Sbjct: 243 PDAVVPSTFDDVPLRVLLPAFILSELKTSFLMGFQIYLPFLIVDLVVASVTISMGMLMLP 302

Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           P  I+LPFK++ FVL+DGW L+VE L+ SF
Sbjct: 303 PAVIALPFKLLLFVLVDGWRLVVEMLMNSF 332


>gi|149928152|ref|ZP_01916398.1| flagellar biosynthesis protein P [Limnobacter sp. MED105]
 gi|149823137|gb|EDM82375.1| flagellar biosynthesis protein P [Limnobacter sp. MED105]
          Length = 256

 Score =  164 bits (414), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 93/193 (48%), Positives = 132/193 (68%), Gaps = 4/193 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P LL+M+T F R +IV S+LR  +G  + PPN VII L++F+TF++M+P  DR  E    
Sbjct: 66  PALLLMMTGFTRIVIVMSLLRMALGTQNSPPNQVIIGLSMFLTFFIMAPVFDRVYENAYL 125

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P  NN+I      +R + P   FM   TRE DL+LFM +    +    +   + +  R+L
Sbjct: 126 PFSNNEIEFQEMTERASVPMKDFMLKQTREPDLALFMRLGKVEN----VENPEDVPLRVL 181

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           IP+F+ SEL+ +F+IGF+I LPFL+ID+IVA+++M+MGMMML P  ISLPFK++ FVL+D
Sbjct: 182 IPAFVTSELKTAFQIGFMIFLPFLVIDLIVASVLMSMGMMMLSPMLISLPFKIMLFVLVD 241

Query: 233 GWSLLVENLVKSF 245
           GW+LLV +LV SF
Sbjct: 242 GWTLLVGSLVASF 254


>gi|256376457|ref|YP_003100117.1| flagellar biosynthesis protein FliP [Actinosynnema mirum DSM 43827]
 gi|255920760|gb|ACU36271.1| flagellar biosynthetic protein FliP [Actinosynnema mirum DSM 43827]
          Length = 293

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 75/200 (37%), Positives = 127/200 (63%), Gaps = 4/200 (2%)

Query: 46  FTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDR 105
            T+LS+AP LL++ T F +  +V SI R  +G+ +VPPN V+  LALF++ ++M P    
Sbjct: 97  LTVLSVAPALLLLCTSFTKVFVVLSITRNALGLTTVPPNQVLAGLALFLSLFIMGPVASE 156

Query: 106 SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165
             + GIQP +  + +   A +  ++P   FM   TR ++++LF  ++            +
Sbjct: 157 VNDQGIQPYLKGEKSTEQAFEDGSKPLREFMVKQTRPEEIALFTKVSGQEKP----ANAE 212

Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225
            +    LIP+F++SELR +  IGF++ +PFL+IDM+V+  +M++GMMMLPP +++LPFK+
Sbjct: 213 SVPLTTLIPAFVLSELRAAMIIGFVLYIPFLVIDMVVSAALMSLGMMMLPPVTVALPFKL 272

Query: 226 IFFVLIDGWSLLVENLVKSF 245
           + FVL +GW L++  LV ++
Sbjct: 273 LLFVLANGWGLVITALVATY 292


>gi|261855324|ref|YP_003262607.1| flagellar biosynthesis protein FliP [Halothiobacillus neapolitanus
           c2]
 gi|261835793|gb|ACX95560.1| flagellar biosynthetic protein FliP [Halothiobacillus neapolitanus
           c2]
          Length = 274

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 85/186 (45%), Positives = 128/186 (68%), Gaps = 4/186 (2%)

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R IIV S++R  +G+   P N ++I LALF+T ++M+P   +S + GI+P M+ +I
Sbjct: 85  TSFTRIIIVLSLMRQALGLTQTPSNQILIGLALFLTLFIMAPVFQKSYDEGIKPYMDQKI 144

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           T   AI++ AEP   FM N TR+ D++LF ++ H     T       + Y +L+ +F+ S
Sbjct: 145 TANVAIEKAAEPLRTFMLNQTRQSDIALFQNIGHYPAFETP----KDVPYTVLMAAFITS 200

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+ +FEIGFLI +PFLIID++VA+++M+MGMMML P  +SLPFK++ FVL+DGW+L++ 
Sbjct: 201 ELKTAFEIGFLIFIPFLIIDLVVASVLMSMGMMMLSPMIVSLPFKLMLFVLVDGWTLIMG 260

Query: 240 NLVKSF 245
            L  SF
Sbjct: 261 TLASSF 266


>gi|68164510|gb|AAY87239.1| predicted flagellar biosynthesis protein [uncultured bacterium
           BAC17H8]
          Length = 256

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 81/193 (41%), Positives = 127/193 (65%), Gaps = 4/193 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P L++ +T F R IIV SILR  MG    PPN V++++ALF+TF++M+PTL       I 
Sbjct: 65  PSLVLGMTSFTRIIIVLSILRQAMGTQQTPPNQVLVAIALFLTFFIMAPTLTTLNSDVIS 124

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P ++ Q+   TA+    E    F+  NTR  DL +F +M      +      + +   +L
Sbjct: 125 PYLDGQLPAETALANGTEVMKRFLVQNTRVNDLVMFTEMIG----DQPYASAEDVPLSVL 180

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           +P+F+ SEL+ +F+IGFL+ LPFL+IDM++A+I+M++GMMML P  ++LPFK++ FVL+D
Sbjct: 181 LPAFITSELKTAFQIGFLLFLPFLVIDMVIASILMSLGMMMLSPMLVALPFKLLLFVLVD 240

Query: 233 GWSLLVENLVKSF 245
           GW++ V +LV ++
Sbjct: 241 GWAMTVGSLVATY 253


>gi|170021379|ref|YP_001726333.1| flagellar biosynthesis protein FliP [Escherichia coli ATCC 8739]
 gi|169756307|gb|ACA79006.1| flagellar biosynthetic protein FliP [Escherichia coli ATCC 8739]
          Length = 250

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 82/200 (41%), Positives = 128/200 (64%), Gaps = 6/200 (3%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T++ + P +++M+TCF RFIIV S+LR  +G+   PPN ++I +AL +T  VM P   
Sbjct: 50  LMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWL 109

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              +  + P  N++IT T A+   A P   FM   T +K ++  M +  +     D    
Sbjct: 110 NIYDHAVVPFENDRITLTDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKGNAADQ--- 166

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
              +  I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P  +SLPFK
Sbjct: 167 ---DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFK 223

Query: 225 VIFFVLIDGWSLLVENLVKS 244
           ++ FVLIDGWSL +  L  S
Sbjct: 224 LMLFVLIDGWSLTIGTLTTS 243


>gi|103488403|ref|YP_617964.1| flagellar biosynthesis protein FliP [Sphingopyxis alaskensis
           RB2256]
 gi|98978480|gb|ABF54631.1| flagellar biosynthetic protein FliP [Sphingopyxis alaskensis
           RB2256]
          Length = 256

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 82/188 (43%), Positives = 120/188 (63%), Gaps = 4/188 (2%)

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           M+T F R IIV SILR  +G+   PPN V++ L+LF++ +VM P +     + I+P    
Sbjct: 71  MMTSFTRIIIVLSILRHALGLQQTPPNQVLVGLSLFLSLFVMQPVISEVNRVAIEPYGQE 130

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
           QI    A+ R  +    FM   TR+ DL +F  +A    R         + + IL+P+F+
Sbjct: 131 QIDIGEAVSRSGDALHGFMMKQTRKTDLMMFAKIA----RAPAYASPKDVPFSILLPAFV 186

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
            SEL+ +F+IGFLI LPFL+ID+IVA+ +M++GMMML PT IS+PFK++ FVL+DGW+L 
Sbjct: 187 TSELKTAFQIGFLIFLPFLVIDLIVASALMSLGMMMLSPTIISMPFKLLLFVLVDGWALT 246

Query: 238 VENLVKSF 245
           + +L  SF
Sbjct: 247 MGSLAASF 254


>gi|91200236|emb|CAJ73280.1| strongly similar to polar flagellar assembly protein FliP
           [Candidatus Kuenenia stuttgartiensis]
          Length = 254

 Score =  163 bits (412), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 80/185 (43%), Positives = 123/185 (66%), Gaps = 4/185 (2%)

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R IIV S +R  +   ++PPN ++I +ALF+TF+VM+P         +QP +  +I
Sbjct: 72  TSFTRIIIVLSFVRKALSFHTLPPNQILIGIALFLTFFVMTPVWTAINSDALQPYIKEEI 131

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           T+  A+++  EP   FM   TR+KD++LF ++A      +       I   ILIP+F+ S
Sbjct: 132 TQDEALKKGIEPVRKFMLKQTRKKDIALFSNIAKVEKPFS----ASDIPMHILIPAFVTS 187

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+ SF++GFL+ LPFL+ID++VA ++ +MGM MLPP  IS+PFK+I FVL+DGW L+++
Sbjct: 188 ELKTSFQMGFLLFLPFLVIDLVVACVLTSMGMFMLPPVMISMPFKLILFVLVDGWQLIIQ 247

Query: 240 NLVKS 244
           +L+ S
Sbjct: 248 SLITS 252


>gi|254973925|ref|ZP_05270397.1| flagellar biosynthesis protein FliP [Clostridium difficile
           QCD-66c26]
 gi|255091312|ref|ZP_05320790.1| flagellar biosynthesis protein FliP [Clostridium difficile CIP
           107932]
 gi|255305286|ref|ZP_05349458.1| flagellar biosynthesis protein FliP [Clostridium difficile ATCC
           43255]
 gi|255312969|ref|ZP_05354552.1| flagellar biosynthesis protein FliP [Clostridium difficile
           QCD-76w55]
 gi|255515728|ref|ZP_05383404.1| flagellar biosynthesis protein FliP [Clostridium difficile
           QCD-97b34]
 gi|255648822|ref|ZP_05395724.1| flagellar biosynthesis protein FliP [Clostridium difficile
           QCD-37x79]
 gi|260682041|ref|YP_003213326.1| flagellar biosynthesis protein FliP [Clostridium difficile CD196]
 gi|260685639|ref|YP_003216772.1| flagellar biosynthesis protein FliP [Clostridium difficile R20291]
 gi|306518937|ref|ZP_07405284.1| flagellar biosynthesis protein FliP [Clostridium difficile
           QCD-32g58]
 gi|260208204|emb|CBA60554.1| flagellar biosynthetic protein [Clostridium difficile CD196]
 gi|260211655|emb|CBE01917.1| flagellar biosynthetic protein [Clostridium difficile R20291]
          Length = 221

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 78/205 (38%), Positives = 129/205 (62%), Gaps = 3/205 (1%)

Query: 41  RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100
           + F   T L   P ++ M+T F R +I  S L++ +G     P+ +++ LA+ +T ++M 
Sbjct: 19  QLFLFLTALMFLPFVMFMMTSFVRIVISLSFLKSALGAQQAIPSQILVGLAIVLTIFIMR 78

Query: 101 PTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD 160
           P L+   E  +QP M  ++T   A++    P   F+   TR+ DL LF++ A    +   
Sbjct: 79  PVLNEINEKALQPYMKEEVTMEEAMKEAEGPIKEFLLKQTRQTDLDLFVEQAGLKEKKLT 138

Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
               ++I   +++P+F ISEL+ +F+IGFLI +PFLIID++VA+++M+MGM MLPP  IS
Sbjct: 139 ---RENIPLSVVVPAFAISELKTAFQIGFLIYIPFLIIDLVVASVLMSMGMFMLPPVMIS 195

Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245
           LPFK++ FV++DGW+L+V+ L+  F
Sbjct: 196 LPFKLLLFVMVDGWNLIVKTLILGF 220


>gi|238752883|ref|ZP_04614348.1| Lateral flagellar export/assembly protein (FliP-like) [Yersinia
           rohdei ATCC 43380]
 gi|238708922|gb|EEQ01175.1| Lateral flagellar export/assembly protein (FliP-like) [Yersinia
           rohdei ATCC 43380]
          Length = 248

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 84/194 (43%), Positives = 124/194 (63%), Gaps = 10/194 (5%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           PI+++M+TCF RFIIV +ILR  +G+   PPN V+  +AL +T  VM P   +  E  + 
Sbjct: 59  PIMMLMMTCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKIHEDAVI 118

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH--SSHRNTDITKNDHIEYR 170
           P  N++IT   A++R   P   +M   T  K L   MD+A      +  D+T        
Sbjct: 119 PFQNDEITLPQALRRAEIPLKNYMLAQTSTKSLEQMMDIAQVTGEPQQQDLT-------- 170

Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230
           ++ P++++SEL+ +F+IGF+I +PFL+ID+IVA+I+MAMGMMML P  +SLPFK++ FVL
Sbjct: 171 VVTPAYVLSELKTAFQIGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVL 230

Query: 231 IDGWSLLVENLVKS 244
            DGW+L+V  L  S
Sbjct: 231 CDGWTLIVGTLTAS 244


>gi|126697832|ref|YP_001086729.1| flagellar biosynthesis protein FliP [Clostridium difficile 630]
 gi|255099428|ref|ZP_05328405.1| flagellar biosynthesis protein FliP [Clostridium difficile
           QCD-63q42]
 gi|115249269|emb|CAJ67082.1| Flagellar biosynthesis protein FliP [Clostridium difficile]
          Length = 221

 Score =  162 bits (410), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 78/205 (38%), Positives = 129/205 (62%), Gaps = 3/205 (1%)

Query: 41  RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100
           + F   T L   P ++ M+T F R +I  S L++ +G     P+ +++ LA+ +T ++M 
Sbjct: 19  QLFLFLTALMFLPFVMFMMTSFVRIVISLSFLKSALGAQQAIPSQILVGLAIVLTIFIMR 78

Query: 101 PTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD 160
           P L+   E  +QP M  ++T   A++    P   F+   TR+ DL LF++ A    +   
Sbjct: 79  PVLNEINEKALQPYMKEEVTMEEAMKEAEGPIKEFLLTQTRQTDLDLFVEQAGLKEKKLT 138

Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
               ++I   +++P+F ISEL+ +F+IGFLI +PFLIID++VA+++M+MGM MLPP  IS
Sbjct: 139 ---RENIPLSVVVPAFAISELKTAFQIGFLIYIPFLIIDLVVASVLMSMGMFMLPPVMIS 195

Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245
           LPFK++ FV++DGW+L+V+ L+  F
Sbjct: 196 LPFKLLLFVMVDGWNLIVKTLILGF 220


>gi|323171041|gb|EFZ56690.1| flagellar biosynthetic protein FliP [Escherichia coli LT-68]
          Length = 250

 Score =  162 bits (410), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 82/200 (41%), Positives = 127/200 (63%), Gaps = 6/200 (3%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T++ + P +++M+TCF RFIIV S+LR  +G+   PPN ++I +AL +T  VM P   
Sbjct: 50  LMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWL 109

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              +  + P  N+QI  + A+   A P   FM   T +K ++  M +  +     D    
Sbjct: 110 NIYDHAVVPFENDQIPLSDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKGNAADQ--- 166

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
              +  I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P  +SLPFK
Sbjct: 167 ---DLTIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFK 223

Query: 225 VIFFVLIDGWSLLVENLVKS 244
           +I FVLIDGWSL +  L  S
Sbjct: 224 LILFVLIDGWSLTIGTLTTS 243


>gi|307824489|ref|ZP_07654714.1| flagellar biosynthetic protein FliP [Methylobacter tundripaludum
           SV96]
 gi|307734473|gb|EFO05325.1| flagellar biosynthetic protein FliP [Methylobacter tundripaludum
           SV96]
          Length = 252

 Score =  162 bits (409), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 85/186 (45%), Positives = 130/186 (69%), Gaps = 4/186 (2%)

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R +IV S+LRT +G GS P N V++ L++F+T ++M P  D+     +QP +  +I
Sbjct: 68  TSFTRIMIVLSLLRTALGTGSAPSNQVLLGLSMFLTIFIMMPVFDKVNAEAVQPYLEEKI 127

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
             T AI++ +EPF  FM   TRE DL LF+ ++  +    ++   +++ + +L+P+F+ S
Sbjct: 128 DVTVAIEKASEPFRQFMLKQTREADLELFIRISGKA----ELESAENVPFSLLLPAFVTS 183

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+ +F+IGFLI LPFL+ID++VA+++M+MGMMML P  ISLPFK++ FVL DGWSL++E
Sbjct: 184 ELKTAFQIGFLIFLPFLVIDLVVASVLMSMGMMMLSPMIISLPFKIMLFVLADGWSLIME 243

Query: 240 NLVKSF 245
            L  SF
Sbjct: 244 MLAASF 249


>gi|114798811|ref|YP_758976.1| flagellar biosynthesis protein FliP [Hyphomonas neptunium ATCC
           15444]
 gi|114738985|gb|ABI77110.1| flagellar biosynthetic protein FliP [Hyphomonas neptunium ATCC
           15444]
          Length = 252

 Score =  161 bits (408), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 87/227 (38%), Positives = 144/227 (63%), Gaps = 5/227 (2%)

Query: 19  AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           A ++L  ++N   D  +S+ +V+   + T+LS+ P + +MVTC P  +IVFS +R  +G+
Sbjct: 29  APAALDGLLNPSGDGQLSSSVVQLVLLVTVLSLVPGIAMMVTCLPFMVIVFSFMRQAIGV 88

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
              PPN++I++LA+F+TF+VM P    + E GI P M+  + E  A     +PF  FM  
Sbjct: 89  QQAPPNMMIMALAMFLTFFVMEPVFMSAWENGISPYMDGVLDEQQAWALSTDPFRAFMMQ 148

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
            T  + L    D       N  + + +   + +L  +FM+SE++ +F+IGF+I LPF++I
Sbjct: 149 RTDPEALLTLGDAV-----NRPVVEGEDPAFSLLATAFMLSEIKHAFQIGFVIFLPFMVI 203

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           D++VA+++MA+GMMM+PPT +SLPFK+ FFVL DGW  + E +++ +
Sbjct: 204 DLVVASVLMAVGMMMVPPTVVSLPFKLGFFVLADGWLKITEAVLRGY 250


>gi|331666527|ref|ZP_08367401.1| flagellar biosynthetic protein FliP [Escherichia coli TA271]
 gi|331065751|gb|EGI37635.1| flagellar biosynthetic protein FliP [Escherichia coli TA271]
          Length = 250

 Score =  161 bits (408), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 81/200 (40%), Positives = 127/200 (63%), Gaps = 6/200 (3%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T++ + P +++M+TCF RFIIV S+LR  +G+   PPN ++I +AL +T  VM P   
Sbjct: 50  LMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWL 109

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              +  + P  N+QI  + A+   A P   FM   T +K ++  M +  +     D    
Sbjct: 110 NIYDHAVVPFENDQIPLSDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKGHAADQ--- 166

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
              +  I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P  +SLPFK
Sbjct: 167 ---DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFK 223

Query: 225 VIFFVLIDGWSLLVENLVKS 244
           ++ FVLIDGWSL +  L  S
Sbjct: 224 LMLFVLIDGWSLTIGTLTTS 243


>gi|326386956|ref|ZP_08208569.1| flagellar biosynthesis protein FliP [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208565|gb|EGD59369.1| flagellar biosynthesis protein FliP [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 300

 Score =  161 bits (408), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 86/194 (44%), Positives = 128/194 (65%), Gaps = 4/194 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P L++M+T F R +IV ++LR  +G+   PPN V+I L+LF++ +VM PTLDR     IQ
Sbjct: 111 PSLVLMMTSFTRILIVLALLRQALGLQQSPPNPVLIGLSLFLSLFVMGPTLDRVNANAIQ 170

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P     I    A       F  FM   TRE DL +F DMAH+            + + IL
Sbjct: 171 PYSAGTINAEQAFVNGGREFHAFMIRQTREHDLLMFADMAHAPR----FASPADVPWTIL 226

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           +P+F+ SEL+ +F+IGF++ LPFL+ID++V++++M++GMMM+ PT ISLPFK++ FVL+D
Sbjct: 227 LPAFVTSELKTAFQIGFMLFLPFLVIDLVVSSVLMSLGMMMMSPTVISLPFKLLLFVLVD 286

Query: 233 GWSLLVENLVKSFI 246
           GW+LL+ +L  SF+
Sbjct: 287 GWALLMGSLASSFV 300


>gi|257095348|ref|YP_003168989.1| flagellar biosynthesis protein FliP [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047872|gb|ACV37060.1| flagellar biosynthetic protein FliP [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 250

 Score =  161 bits (407), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 92/193 (47%), Positives = 132/193 (68%), Gaps = 4/193 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P  L+M+T F R IIV S+LR  +G  + PPN V++ L+LF+TF++MSP LD        
Sbjct: 60  PAALLMMTSFTRIIIVLSLLRHALGTQTSPPNQVLLGLSLFLTFFIMSPVLDTVYTEAYL 119

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           PL  N+IT   AI+R A P   FM   TRE D++LF  M ++    +     D I  R+L
Sbjct: 120 PLSENRITYLQAIERGAVPLRKFMLKQTREADIALFARMTNAPRFQS----TDDIPMRLL 175

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           IP+F+ SEL+ +F+IGF+I +PFLI+DM+VA+++M+MGMMM+ P  ++LPFK++ FVL+D
Sbjct: 176 IPAFVTSELKTAFQIGFIIFIPFLIVDMVVASVLMSMGMMMMSPVMVALPFKLMLFVLVD 235

Query: 233 GWSLLVENLVKSF 245
           GW LL+ +LV SF
Sbjct: 236 GWHLLLGSLVASF 248


>gi|306817703|ref|ZP_07451445.1| flagellar biosynthetic protein FliP [Mobiluncus mulieris ATCC
           35239]
 gi|304649517|gb|EFM46800.1| flagellar biosynthetic protein FliP [Mobiluncus mulieris ATCC
           35239]
          Length = 425

 Score =  161 bits (407), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 82/209 (39%), Positives = 136/209 (65%), Gaps = 4/209 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           T  V  F + T+LS+AP LL+M+T F +  IV ++ R  +G+  +PP  V+  LA+F++ 
Sbjct: 220 TTTVLVFLLITVLSVAPSLLLMMTSFTKIFIVLAMARNALGLNQIPPTQVLSGLAIFLSL 279

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           ++M+PT++      +QPL + +I      +   +PF  FM   TRE+D++L   M  +++
Sbjct: 280 FIMAPTVNTLWTDVVQPLTDGKIEVQEVFKLGEKPFRDFMGPLTREEDIAL---MTRAAN 336

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
           R  +    D   +  L+P+FMISE+R +F IGF++ +PFL+ID++V   +M+MGMMMLPP
Sbjct: 337 R-PNPESLDKTPFTTLVPAFMISEVRSAFIIGFVVFIPFLVIDLVVGAALMSMGMMMLPP 395

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             +SLPFKV+ FV++DGW +L + L+ ++
Sbjct: 396 VMVSLPFKVLLFVMVDGWGMLTQTLIGTY 424


>gi|322432985|ref|YP_004210234.1| flagellar biosynthetic protein FliP [Acidobacterium sp. MP5ACTX9]
 gi|321165212|gb|ADW70916.1| flagellar biosynthetic protein FliP [Acidobacterium sp. MP5ACTX9]
          Length = 236

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 77/203 (37%), Positives = 130/203 (64%), Gaps = 8/203 (3%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T LS+ P LL+ +T F R +IVF  LR  +G+ + P N  +I L++ MTF++M P   
Sbjct: 39  LLTFLSLIPSLLLCITPFARLLIVFHFLRQALGLQTTPSNQTLIGLSMIMTFFLMQPVGA 98

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSS--HRNTDIT 162
              +  + PL    IT   A++R   P   FM +  R+KD++LF+++A     H   D++
Sbjct: 99  VIYDTAVTPLQAGTITPLQALERAGTPMRQFMAHYVRDKDVALFLELAKEPRPHNVQDLS 158

Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
                 +R+++P++++SEL+  F+IG ++ LPFL++DM+VA+I  ++GMM LPP  IS P
Sbjct: 159 ------FRVMLPAYILSELKAGFQIGTVLFLPFLVVDMVVASITTSVGMMQLPPVVISTP 212

Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245
            K++ F+++DGW LL+ +L++SF
Sbjct: 213 LKLLLFLMVDGWHLLISSLMRSF 235


>gi|307701549|ref|ZP_07638566.1| flagellar biosynthetic protein FliP [Mobiluncus mulieris FB024-16]
 gi|307613228|gb|EFN92480.1| flagellar biosynthetic protein FliP [Mobiluncus mulieris FB024-16]
          Length = 462

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 82/209 (39%), Positives = 136/209 (65%), Gaps = 4/209 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           T  V  F + T+LS+AP LL+M+T F +  IV ++ R  +G+  +PP  V+  LA+F++ 
Sbjct: 257 TTTVLVFLLITVLSVAPSLLLMMTSFTKIFIVLAMARNALGLNQIPPTQVLSGLAIFLSL 316

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           ++M+PT++      +QPL + +I      +   +PF  FM   TRE+D++L   M  +++
Sbjct: 317 FIMAPTVNTLWTDVVQPLTDGKIEVQEVFKLGEKPFRDFMGPLTREEDIAL---MTRAAN 373

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
           R  +    D   +  L+P+FMISE+R +F IGF++ +PFL+ID++V   +M+MGMMMLPP
Sbjct: 374 R-PNPESLDKTPFTTLVPAFMISEVRSAFIIGFVVFIPFLVIDLVVGAALMSMGMMMLPP 432

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             +SLPFKV+ FV++DGW +L + L+ ++
Sbjct: 433 VMVSLPFKVLLFVMVDGWGMLTQTLIGTY 461


>gi|183221911|ref|YP_001839907.1| flagellar biosynthesis protein FliP [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189911980|ref|YP_001963535.1| flagellar biosynthesis protein FliP [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167776656|gb|ABZ94957.1| Endoflagellar biosynthesis pathway protein [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167780333|gb|ABZ98631.1| Flagellar biosynthetic protein FliP; putative membrane protein;
           putative signal peptide [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 269

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 84/219 (38%), Positives = 147/219 (67%), Gaps = 10/219 (4%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P + S+S  I+    + TILS+AP +++ VT F + +IVF  +R  + + ++PPN V++ 
Sbjct: 57  PKETSLSLMILF---LVTILSLAPAIVMSVTSFTKVVIVFDFVRRALSLQNLPPNQVMMG 113

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM-RNNTRE--KDLS 146
           LALF+TF++M+PT+ +  +  +QP +N +I ++  ++   +    FM R   ++  KD++
Sbjct: 114 LALFVTFFIMAPTIGKVNDEALQPYLNGKIDQSAFMEGSMKHLRQFMIRQLGKDGTKDVA 173

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
           LF+ +     +  ++   + +   +L+P+FM+SE++++F IG  I +PF++ID+IVA+ +
Sbjct: 174 LFLKIG----KVQNVKSFEDVPSYVLVPAFMLSEIKKAFIIGIYIFIPFIVIDLIVASAL 229

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +AMG MMLPP  ISLP K+I F+LIDGW+LLV  LV+S+
Sbjct: 230 LAMGFMMLPPVMISLPLKLILFILIDGWNLLVLELVRSY 268


>gi|227873535|ref|ZP_03991780.1| flagellar biosynthesis protein FliP [Oribacterium sinus F0268]
 gi|227840625|gb|EEJ51010.1| flagellar biosynthesis protein FliP [Oribacterium sinus F0268]
          Length = 218

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 80/203 (39%), Positives = 127/203 (62%), Gaps = 8/203 (3%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T++++ P ++IM+T F R II+ S  R  MG+   PPN+V+  +A F+T Y+MSPTL+
Sbjct: 21  LLTLVALLPSIVIMMTSFTRIIIILSFTRNAMGVQQTPPNMVLAGIAFFLTLYIMSPTLN 80

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +      +P     +T+  A+  + +    FM  NT +  L  F+ M+          + 
Sbjct: 81  KINTEAYEPYKKGTVTQEEALNIMGKDMKEFMLRNTEKATLDRFVSMSKVE------LQK 134

Query: 165 DHIEY--RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
           D  +Y   ++ P+FM SEL+R F  GFLI LPFL+ID++V+T +MAMGM+MLPP  +S+P
Sbjct: 135 DPKDYPLTVVTPAFMTSELKRGFTAGFLIYLPFLLIDVVVSTTLMAMGMVMLPPAMVSMP 194

Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245
           FK++ F+ +DGW+LL  ++V SF
Sbjct: 195 FKLLLFITVDGWNLLFSSVVNSF 217


>gi|300936103|ref|ZP_07151044.1| flagellar biosynthetic protein FliP [Escherichia coli MS 21-1]
 gi|300458752|gb|EFK22245.1| flagellar biosynthetic protein FliP [Escherichia coli MS 21-1]
          Length = 194

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 81/188 (43%), Positives = 120/188 (63%), Gaps = 6/188 (3%)

Query: 57  IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
           +M+TCF RFIIV S+LR  +G+   PPN ++I +AL +T  VM P      +  + P  N
Sbjct: 6   LMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTLLVMRPIWLNIYDHAVVPFEN 65

Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
           +QIT T A+   A P   FM   T +K ++  M +  +     D       +  I++P++
Sbjct: 66  DQITLTDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKGNAADQ------DLSIVVPAY 119

Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
           ++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P  +SLPFK++ FVLIDGWSL
Sbjct: 120 VLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWSL 179

Query: 237 LVENLVKS 244
            +  L  S
Sbjct: 180 TIGTLTTS 187


>gi|227876756|ref|ZP_03994865.1| possible flagellar biosynthesis protein FliP [Mobiluncus mulieris
           ATCC 35243]
 gi|227842653|gb|EEJ52853.1| possible flagellar biosynthesis protein FliP [Mobiluncus mulieris
           ATCC 35243]
          Length = 502

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 80/203 (39%), Positives = 134/203 (66%), Gaps = 4/203 (1%)

Query: 43  FGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT 102
           F + T+LS+AP LL+M+T F +  IV ++ R  +G+  +PP  V+  LA+F++ ++M+PT
Sbjct: 303 FLLITVLSVAPSLLLMMTSFTKIFIVLAMARNALGLNQIPPTQVLSGLAIFLSLFIMAPT 362

Query: 103 LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT 162
           ++      +QPL + +I      +   +PF  FM   TRE+D++L   M  +++R  +  
Sbjct: 363 VNTLWTDVVQPLTDGKIEVQEVFKLGEKPFRDFMGPLTREEDIAL---MTRAANR-PNPE 418

Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
             D   +  L+P+FMISE+R +F IGF++ +PFL+ID++V   +M+MGMMMLPP  +SLP
Sbjct: 419 SLDKTPFTTLVPAFMISEVRSAFIIGFVVFIPFLVIDLVVGAALMSMGMMMLPPVMVSLP 478

Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245
           FKV+ FV++DGW +L + L+ ++
Sbjct: 479 FKVLLFVMVDGWGMLTQTLIGTY 501


>gi|269976283|ref|ZP_06183279.1| flagellar biosynthesis protein FliP [Mobiluncus mulieris 28-1]
 gi|269935612|gb|EEZ92150.1| flagellar biosynthesis protein FliP [Mobiluncus mulieris 28-1]
          Length = 528

 Score =  159 bits (403), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 79/203 (38%), Positives = 132/203 (65%), Gaps = 4/203 (1%)

Query: 43  FGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT 102
           F + T+LS+AP LL+M+T F +  IV ++ R  +G+  +PP  V+  LA+F++ ++M+PT
Sbjct: 329 FLLITVLSVAPSLLLMMTSFTKIFIVLAMARNALGLNQIPPTQVLSGLAIFLSLFIMAPT 388

Query: 103 LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT 162
           ++      +QPL + +I      +   +PF  FM   TRE+D++L    A+  +  +   
Sbjct: 389 VNTLWTDVVQPLTDGKIEVQEVFKLGEKPFRDFMGPLTREEDIALMTRAANRPNPES--- 445

Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
             D   +  L+P+FMISE+R +F IGF++ +PFL+ID++V   +M+MGMMMLPP  +SLP
Sbjct: 446 -LDKTPFTTLVPAFMISEVRSAFIIGFVVFIPFLVIDLVVGAALMSMGMMMLPPVMVSLP 504

Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245
           FKV+ FV++DGW +L + L+ ++
Sbjct: 505 FKVLLFVMVDGWGMLTQTLIGTY 527


>gi|332294877|ref|YP_004436800.1| flagellar biosynthetic protein FliP [Thermodesulfobium narugense
           DSM 14796]
 gi|332177980|gb|AEE13669.1| flagellar biosynthetic protein FliP [Thermodesulfobium narugense
           DSM 14796]
          Length = 248

 Score =  159 bits (403), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 94/216 (43%), Positives = 142/216 (65%), Gaps = 7/216 (3%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P D++ S   ++   I TIL+ AP+LL+M T F R +IVF  LR  +G+  + P  +II 
Sbjct: 38  PNDIANS---LKVLFILTILAFAPLLLLMTTSFLRLVIVFGFLRNALGIQQIIPGQIIIG 94

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           L+LF+T ++M+P + +  +    P    QIT   AI+R   P   FM +NTR+ DLSL +
Sbjct: 95  LSLFLTLFIMTPIIQKIEQDAYTPYQKGQITFQDAIERGYIPLRDFMLHNTRKSDLSLMI 154

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
           +++ +   N+     + I   ++I +F++SEL+ SF IG +I LPF+IID+ VA+I+M+M
Sbjct: 155 ELSRTPRPNSV----NEIAPTVVISAFVLSELKTSFIIGIVIYLPFVIIDLAVASILMSM 210

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMM+PP  ISLP K++ FVL DGWSLLV++L+ SF
Sbjct: 211 GMMMIPPVMISLPLKILLFVLADGWSLLVKSLIASF 246


>gi|94968670|ref|YP_590718.1| flagellar biosynthesis protein FliP [Candidatus Koribacter
           versatilis Ellin345]
 gi|94550720|gb|ABF40644.1| flagellar biosynthetic protein FliP [Candidatus Koribacter
           versatilis Ellin345]
          Length = 244

 Score =  159 bits (402), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 87/242 (35%), Positives = 147/242 (60%), Gaps = 12/242 (4%)

Query: 5   CFFALFLVTPELVFAKSSLHDVMNIPADLSIST-WIVRTFGIFTILSIAPILLIMVTCFP 63
           CF  L +  P L     + H V N+PA  + +T W +    + T +++ P +L+ +T F 
Sbjct: 13  CFGMLSISRPAL----GADHGV-NLPAIGNNATPWTIVV--LLTAVTLLPAVLLCMTPFV 65

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
           R ++VF  LR  +G  + P N  ++ L L +T ++M P +    +  + P+   +I+ T 
Sbjct: 66  RLLVVFHFLRQALGTQTAPTNQTLVGLTLILTLFLMQPVITHIQQDALTPMQQGKISVTE 125

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
           AI R AEP   FM   +REKDL+LF+++A      T    +  + +R++ P++++SEL+ 
Sbjct: 126 AISRGAEPVRQFMLRFSREKDLALFVELAKLPPPKT----SQDLPFRVVAPAYILSELKA 181

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
            F+IG ++ LPFL+ID+++A I  ++GMM LPP  IS P K++ FV++DGW+LL+ +L+K
Sbjct: 182 GFQIGAVLFLPFLVIDLVIAAITTSVGMMQLPPVVISTPVKILLFVMVDGWNLLIASLMK 241

Query: 244 SF 245
           SF
Sbjct: 242 SF 243


>gi|94496750|ref|ZP_01303325.1| Type III secretory pathway, component EscR [Sphingomonas sp. SKA58]
 gi|94423763|gb|EAT08789.1| Type III secretory pathway, component EscR [Sphingomonas sp. SKA58]
          Length = 216

 Score =  158 bits (400), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 73/203 (35%), Positives = 127/203 (62%), Gaps = 1/203 (0%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           +  ++++AP   +MVT F + ++V S+LR  +G+  VPPN+V+  +AL ++ YVM PT+ 
Sbjct: 14  VVVLIALAPFFAVMVTSFTKIVVVLSLLRNALGLQQVPPNVVLNGMALVLSVYVMYPTMQ 73

Query: 105 RSIEMGIQPLMNNQITET-TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163
           +      Q  + +Q +E  +A  R  EP   F+  ++   + + F+       + +    
Sbjct: 74  QMAAASGQQAVPSQTSEIFSAADRAKEPLRAFLIKHSAADERAFFLRTQQRVAKQSGTQA 133

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
               ++ +++P+F++ EL  +F+IGFLI LPFL+ID++++ I++AMGMMML P +ISLPF
Sbjct: 134 ASATDFIVVVPAFVVRELTVAFQIGFLIFLPFLVIDLVISNILLAMGMMMLSPVTISLPF 193

Query: 224 KVIFFVLIDGWSLLVENLVKSFI 246
           K++ FVL+DGW  L   LV S++
Sbjct: 194 KILLFVLVDGWVKLSHGLVLSYV 216


>gi|325109027|ref|YP_004270095.1| flagellar biosynthetic protein FliP [Planctomyces brasiliensis DSM
           5305]
 gi|324969295|gb|ADY60073.1| flagellar biosynthetic protein FliP [Planctomyces brasiliensis DSM
           5305]
          Length = 340

 Score =  158 bits (400), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 90/212 (42%), Positives = 128/212 (60%), Gaps = 20/212 (9%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP L+IM TCF R I+V  +LR  +G   +PPN V++SL+LFMT  +M P    S   G+
Sbjct: 108 APSLVIMTTCFVRMIVVLGLLRQALGTQQLPPNQVLVSLSLFMTIMIMWPVWQESYRAGV 167

Query: 112 QPLMNNQITETTA---------IQRVAEPFWVFMRNN----TREKDLSLFMDMAHSSHRN 158
           QP  ++   ETTA         ++R  EP   FM +       E  + +F+D    +   
Sbjct: 168 QPY-SSSTYETTADQEEGLQLALERSLEPIRNFMSDQIYRTGNENAVWMFIDYQKPAEGT 226

Query: 159 ------TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
                 T+      +   +LIP+FM+SEL+ +F IGF I LPF+IIDM++A+I+++MGMM
Sbjct: 227 AAAETWTEPQSFADVPTTVLIPAFMMSELKTAFVIGFQIYLPFIIIDMVIASILISMGMM 286

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           MLPP  ISLPFK++ FVL+DGW L VE L++S
Sbjct: 287 MLPPVLISLPFKLLLFVLVDGWYLTVEMLLQS 318


>gi|153950465|ref|YP_001399618.1| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis IP
           31758]
 gi|152961960|gb|ABS49421.1| flagellar biosynthetic protein FliP [Yersinia pseudotuberculosis IP
           31758]
          Length = 256

 Score =  158 bits (400), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 80/192 (41%), Positives = 121/192 (63%), Gaps = 6/192 (3%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           PI+++M+TCF RFIIV +ILR  +G+   PPN V+  +AL +T  VM P   +  +  + 
Sbjct: 67  PIMMLMMTCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKIHQDAVI 126

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P   ++IT + A+ R   P   +M   T  K L   M +A  S       +    +  ++
Sbjct: 127 PFQQDEITLSQALGRAEVPLKNYMLAQTSTKSLDQMMAIAQVSG------EPQQQDLSVV 180

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
            P++++SEL+ +F+IGF+I +PFL+ID+IVA+I+MAMGMMML P  +SLPFK++ FVL D
Sbjct: 181 TPAYVLSELKTAFQIGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCD 240

Query: 233 GWSLLVENLVKS 244
           GW+L+V  L  S
Sbjct: 241 GWTLMVGTLTAS 252


>gi|261341515|ref|ZP_05969373.1| flagellar biosynthetic protein FliP [Enterobacter cancerogenus ATCC
           35316]
 gi|288316313|gb|EFC55251.1| flagellar biosynthetic protein FliP [Enterobacter cancerogenus ATCC
           35316]
          Length = 250

 Score =  158 bits (400), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 82/194 (42%), Positives = 121/194 (62%), Gaps = 10/194 (5%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P++L+M+TCF RFIIV +ILR  +G+   PPN ++  +AL +T  VM P      +  I 
Sbjct: 61  PVMLMMMTCFTRFIIVLAILRQALGLQQSPPNKILTGIALALTLLVMRPVWTTIYQDAIV 120

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH--SSHRNTDITKNDHIEYR 170
           P  N++IT   A  +   P   FM   T  K +S  M +A      +  D+T        
Sbjct: 121 PFQNDEITMKQAFGKAEAPLKNFMLAQTSNKAMSQMMTIAGVTGDPKEQDLT-------- 172

Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230
           ++ P++++SEL+ +F+IGF+I +PFL+ID+IVA+I+MAMGMMML P  +SLPFK++ FVL
Sbjct: 173 VVTPAYLLSELKTAFQIGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVL 232

Query: 231 IDGWSLLVENLVKS 244
            DGW+L+V  L  S
Sbjct: 233 CDGWTLIVGTLTSS 246


>gi|186896787|ref|YP_001873899.1| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis
           PB1/+]
 gi|186699813|gb|ACC90442.1| flagellar biosynthetic protein FliP [Yersinia pseudotuberculosis
           PB1/+]
          Length = 256

 Score =  158 bits (399), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 79/192 (41%), Positives = 121/192 (63%), Gaps = 6/192 (3%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           PI+++M+TCF RFIIV +ILR  +G+   PPN V+  +AL +T  VM P   +  +  + 
Sbjct: 67  PIMMLMMTCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKIHQDAVI 126

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P   ++IT + A+ R   P   +M   T  K L   M +A  S       +    +  ++
Sbjct: 127 PFQQDEITLSQALGRAEAPLKNYMLAQTSTKSLDQMMAIAQVSG------EPQQQDLSVV 180

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
            P++++SEL+ +F++GF+I +PFL+ID+IVA+I+MAMGMMML P  +SLPFK++ FVL D
Sbjct: 181 TPAYVLSELKTAFQMGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCD 240

Query: 233 GWSLLVENLVKS 244
           GW+L+V  L  S
Sbjct: 241 GWTLMVGTLTAS 252


>gi|22127344|ref|NP_670767.1| flagellar biosynthesis protein FliP [Yersinia pestis KIM 10]
 gi|45442780|ref|NP_994319.1| flagellar biosynthesis protein FliP [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51597653|ref|YP_071844.1| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis IP
           32953]
 gi|108809075|ref|YP_652991.1| flagellar biosynthesis protein FliP [Yersinia pestis Antiqua]
 gi|108810732|ref|YP_646499.1| flagellar biosynthesis protein FliP [Yersinia pestis Nepal516]
 gi|145597801|ref|YP_001161877.1| flagellar biosynthesis protein FliP [Yersinia pestis Pestoides F]
 gi|150260265|ref|ZP_01916993.1| lateral flagellar export and assembly protein [Yersinia pestis
           CA88-4125]
 gi|162418133|ref|YP_001604861.1| flagellar biosynthesis protein FliP [Yersinia pestis Angola]
 gi|165925078|ref|ZP_02220910.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165939035|ref|ZP_02227587.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008695|ref|ZP_02229593.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166211840|ref|ZP_02237875.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399704|ref|ZP_02305228.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167418889|ref|ZP_02310642.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425117|ref|ZP_02316870.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167466357|ref|ZP_02331061.1| flagellar biosynthetic protein FliP [Yersinia pestis FV-1]
 gi|170022955|ref|YP_001719460.1| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis
           YPIII]
 gi|218927896|ref|YP_002345771.1| flagellar biosynthesis protein FliP [Yersinia pestis CO92]
 gi|229837392|ref|ZP_04457555.1| Flagellar biosynthesis protein fliP [Yersinia pestis Pestoides A]
 gi|229840605|ref|ZP_04460764.1| Flagellar biosynthesis protein fliP [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842844|ref|ZP_04462996.1| Flagellar biosynthesis protein fliP [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229900929|ref|ZP_04516053.1| Flagellar biosynthesis protein fliP [Yersinia pestis Nepal516]
 gi|270487690|ref|ZP_06204764.1| flagellar biosynthetic protein FliP [Yersinia pestis KIM D27]
 gi|294502773|ref|YP_003566835.1| putative flagellar assembly protein [Yersinia pestis Z176003]
 gi|21960427|gb|AAM87018.1|AE013950_3 flagellar biosynthesis protein [Yersinia pestis KIM 10]
 gi|45437646|gb|AAS63196.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51590935|emb|CAH22591.1| Putative flagellar assembly/export protein, fliP [Yersinia
           pseudotuberculosis IP 32953]
 gi|108774380|gb|ABG16899.1| flagellar assembly protein [Yersinia pestis Nepal516]
 gi|108780988|gb|ABG15046.1| putative flagellar assembly protein [Yersinia pestis Antiqua]
 gi|115346507|emb|CAL19383.1| putative flagellar assembly protein [Yersinia pestis CO92]
 gi|145209497|gb|ABP38904.1| flagellar assembly protein [Yersinia pestis Pestoides F]
 gi|149289673|gb|EDM39750.1| lateral flagellar export and assembly protein [Yersinia pestis
           CA88-4125]
 gi|162350948|gb|ABX84896.1| flagellar biosynthetic protein FliP [Yersinia pestis Angola]
 gi|165912991|gb|EDR31616.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165923278|gb|EDR40429.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992034|gb|EDR44335.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166206586|gb|EDR51066.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166962883|gb|EDR58904.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167052208|gb|EDR63616.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055880|gb|EDR65661.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169749489|gb|ACA67007.1| flagellar biosynthetic protein FliP [Yersinia pseudotuberculosis
           YPIII]
 gi|229682268|gb|EEO78360.1| Flagellar biosynthesis protein fliP [Yersinia pestis Nepal516]
 gi|229690111|gb|EEO82168.1| Flagellar biosynthesis protein fliP [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696971|gb|EEO87018.1| Flagellar biosynthesis protein fliP [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229705515|gb|EEO91525.1| Flagellar biosynthesis protein fliP [Yersinia pestis Pestoides A]
 gi|262360805|gb|ACY57526.1| putative flagellar assembly protein [Yersinia pestis D106004]
 gi|262364750|gb|ACY61307.1| putative flagellar assembly protein [Yersinia pestis D182038]
 gi|270336194|gb|EFA46971.1| flagellar biosynthetic protein FliP [Yersinia pestis KIM D27]
 gi|294353232|gb|ADE63573.1| putative flagellar assembly protein [Yersinia pestis Z176003]
 gi|320016727|gb|ADW00299.1| Flagellar biosynthesis protein fliP [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 256

 Score =  158 bits (399), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 79/192 (41%), Positives = 121/192 (63%), Gaps = 6/192 (3%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           PI+++M+TCF RFIIV +ILR  +G+   PPN V+  +AL +T  VM P   +  +  + 
Sbjct: 67  PIMMLMMTCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKIHQDAVI 126

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P   ++IT + A+ R   P   +M   T  K L   M +A  S       +    +  ++
Sbjct: 127 PFQQDEITLSQALGRAEAPLKNYMLAQTSTKSLDQMMAIAQVSG------EPQQQDLSVV 180

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
            P++++SEL+ +F++GF+I +PFL+ID+IVA+I+MAMGMMML P  +SLPFK++ FVL D
Sbjct: 181 TPAYVLSELKTAFQMGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCD 240

Query: 233 GWSLLVENLVKS 244
           GW+L+V  L  S
Sbjct: 241 GWTLMVGTLTAS 252


>gi|325567519|ref|ZP_08144186.1| flagellar biosynthetic protein FliP [Enterococcus casseliflavus
           ATCC 12755]
 gi|325158952|gb|EGC71098.1| flagellar biosynthetic protein FliP [Enterococcus casseliflavus
           ATCC 12755]
          Length = 254

 Score =  158 bits (399), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 103/239 (43%), Positives = 155/239 (64%), Gaps = 8/239 (3%)

Query: 11  LVTPELVFAKSSLHDVM----NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
           L+ P+  FA  +  DV     N+ ++ + S+  + TF + T+LS+ P+LLIM+T F R I
Sbjct: 19  LMLPQTAFALDT-EDVSSTINNLLSNGNGSSDTINTFLLLTLLSLLPVLLIMMTSFTRII 77

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           +V S +R+ +G    PPN V+I LALF+TF++M P      +  I+P    +I++  A  
Sbjct: 78  MVLSFVRSSLGTQQNPPNQVLIGLALFLTFFIMKPVYTDVYQQAIEPFDRQEISQAEAFD 137

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           R  +    FM   TREKD++LF   A +         +D +   +++P+F+ISELR +F 
Sbjct: 138 RSEKRIKAFMMVQTREKDIALF---AEADGETEKYHSSDDVPLTVMVPAFIISELRTAFS 194

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGFLI +PFLIID++V++I+M+MGMMML P  ISLPFK++ FVL+DGW L+VE+L+KSF
Sbjct: 195 IGFLIFIPFLIIDLVVSSILMSMGMMMLSPIMISLPFKILLFVLVDGWYLIVESLIKSF 253


>gi|192359973|ref|YP_001982204.1| flagellar biosynthesis protein FliP [Cellvibrio japonicus Ueda107]
 gi|190686138|gb|ACE83816.1| Flagellar biosynthetic protein fliP [Cellvibrio japonicus Ueda107]
          Length = 279

 Score =  158 bits (399), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 94/209 (44%), Positives = 141/209 (67%), Gaps = 4/209 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           T  ++   + T LS  P +L+M+T F R IIVFSILR  +G+   P N ++I LALF+T 
Sbjct: 73  TVTLQILALMTALSFLPAILMMMTSFTRIIIVFSILRQALGLQQSPSNQILIGLALFLTL 132

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           ++M P  D++    +QP +N QI+   A+ + A PF  FM   TRE D+ LF+ +A    
Sbjct: 133 FIMKPVFDQANHDALQPYINGQISAQEALAKTAAPFHRFMLAQTRESDILLFVGIA---- 188

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
           ++  I   + I + IL P+F+ISEL+ +F+IGF+I +PFLIID++V++++MAMGMMML P
Sbjct: 189 KHPPIATPEDIPFTILAPAFIISELKTAFQIGFIIFIPFLIIDIVVSSVLMAMGMMMLSP 248

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             ISLPFK++ FVL+DGW+++V  L  S+
Sbjct: 249 LIISLPFKIMLFVLVDGWAMIVGTLAASY 277


>gi|54307253|ref|YP_128273.1| flagellar biosynthesis protein FliP [Photobacterium profundum SS9]
 gi|46911673|emb|CAG18471.1| Putative flagellar assembly protein [Photobacterium profundum SS9]
          Length = 242

 Score =  157 bits (398), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 81/206 (39%), Positives = 129/206 (62%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++ F + T L+  P +L+M T F R IIV  ILR  MG+   PPN V++ +AL ++ ++M
Sbjct: 40  LQIFLLMTALAFLPAMLLMTTSFTRIIIVLGILRQAMGLQQSPPNRVLVGIALTLSLFIM 99

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P +    +  + P    ++T   A +   +P   FM   TRE DL   + +A     + 
Sbjct: 100 RPVIYDIHDNAVVPYQKGEMTMFEAAKVAEQPLRQFMLQQTRETDLEQILRIADEPTPD- 158

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                D +++ +++P+F++SEL+ +F+IGF++ +PFLIIDM+VA+++MAMGMMML P  I
Sbjct: 159 ---NVDDLDFLLVMPAFILSELKTAFQIGFMLFIPFLIIDMVVASVLMAMGMMMLSPLII 215

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FV++DGWS+ V  L  SF
Sbjct: 216 SLPFKLMVFVMVDGWSMTVGTLSASF 241


>gi|257866390|ref|ZP_05646043.1| flagellar biosynthesis protein P [Enterococcus casseliflavus EC30]
 gi|257871301|ref|ZP_05650954.1| flagellar biosynthesis protein P [Enterococcus gallinarum EG2]
 gi|257873094|ref|ZP_05652747.1| flagellar biosynthesis protein P [Enterococcus casseliflavus EC10]
 gi|257876003|ref|ZP_05655656.1| flagellar biosynthesis protein P [Enterococcus casseliflavus EC20]
 gi|257800348|gb|EEV29376.1| flagellar biosynthesis protein P [Enterococcus casseliflavus EC30]
 gi|257805465|gb|EEV34287.1| flagellar biosynthesis protein P [Enterococcus gallinarum EG2]
 gi|257807258|gb|EEV36080.1| flagellar biosynthesis protein P [Enterococcus casseliflavus EC10]
 gi|257810169|gb|EEV38989.1| flagellar biosynthesis protein P [Enterococcus casseliflavus EC20]
          Length = 271

 Score =  157 bits (398), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 103/239 (43%), Positives = 155/239 (64%), Gaps = 8/239 (3%)

Query: 11  LVTPELVFAKSSLHDVM----NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
           L+ P+  FA  +  DV     N+ ++ + S+  + TF + T+LS+ P+LLIM+T F R I
Sbjct: 36  LMLPQTAFALDT-EDVSSTINNLLSNGNGSSDTINTFLLLTLLSLLPVLLIMMTSFTRII 94

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           +V S +R+ +G    PPN V+I LALF+TF++M P      +  I+P    +I++  A  
Sbjct: 95  MVLSFVRSSLGTQQNPPNQVLIGLALFLTFFIMKPVYTDVYQQAIEPFDRQEISQAEAFD 154

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           R  +    FM   TREKD++LF   A +         +D +   +++P+F+ISELR +F 
Sbjct: 155 RSEKRIKAFMMVQTREKDIALF---AEADGETEKYHSSDDVPLTVMVPAFIISELRTAFS 211

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGFLI +PFLIID++V++I+M+MGMMML P  ISLPFK++ FVL+DGW L+VE+L+KSF
Sbjct: 212 IGFLIFIPFLIIDLVVSSILMSMGMMMLSPIMISLPFKILLFVLVDGWYLIVESLIKSF 270


>gi|288942627|ref|YP_003444867.1| flagellar biosynthetic protein FliP [Allochromatium vinosum DSM
           180]
 gi|288897999|gb|ADC63835.1| flagellar biosynthetic protein FliP [Allochromatium vinosum DSM
           180]
          Length = 249

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/249 (42%), Positives = 153/249 (61%), Gaps = 9/249 (3%)

Query: 1   MIRYCFFALFLVTPELVFAK-SSLH--DVMNIPADLSISTWIVRTFGIFTILSIAPILLI 57
           + R+      L+ P LV A+   L+   V   P    + +  ++   I T++++ P  LI
Sbjct: 4   LARWGLVLAGLLAPGLVLAQIGGLNAVTVTTAPDGGQVYSVTLQILIIMTLMTLLPSALI 63

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           M+T F R IIV  ILR G+G    P N +++ LALF+T +VMSP      +  IQP M  
Sbjct: 64  MMTSFTRIIIVLGILRQGLGTTQTPSNQILLGLALFLTLFVMSPIFQEIYDTAIQPYMEE 123

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYRILIPSF 176
           Q+    A+ +  +P   FM   TRE DL+LF     +  R  D  ++ D I   +LIPSF
Sbjct: 124 QLGTEEALAKAVKPLRTFMLAQTRESDLALF-----AGIRGIDGFESPDDIPLTLLIPSF 178

Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
           +ISEL+ +F+IGFLI++PFLIID++VA+++M+MGMMML P  ISLPFK++ FVL+DGWSL
Sbjct: 179 VISELKTAFQIGFLILIPFLIIDLVVASVLMSMGMMMLSPLIISLPFKLMLFVLVDGWSL 238

Query: 237 LVENLVKSF 245
           L+  L +SF
Sbjct: 239 LLGTLARSF 247


>gi|119503675|ref|ZP_01625758.1| flagellar biosynthetic protein [marine gamma proteobacterium
           HTCC2080]
 gi|119460737|gb|EAW41829.1| flagellar biosynthetic protein [marine gamma proteobacterium
           HTCC2080]
          Length = 248

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 82/193 (42%), Positives = 124/193 (64%), Gaps = 4/193 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +LI +T F R +IV +ILR  MG    P N +I+ L+LF++ ++M+P  D +    ++
Sbjct: 58  PAMLITMTSFTRVLIVLAILRQAMGTAQTPSNQIILGLSLFLSLFIMAPVFDVAWTTALK 117

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P ++       A++    PF  FM   TR+ DL++F +M             D +   +L
Sbjct: 118 PFLDGGTDFEGALEAAKIPFREFMFTQTRDSDLTMFAEMGGYGA----FASQDDVPMFVL 173

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           +PSF++SEL+ +F+IGFL+ +PFL+ID++VA I+MAMGMMML P  ISLPFK++ FVLID
Sbjct: 174 LPSFLVSELKTAFQIGFLLFVPFLVIDLVVAAILMAMGMMMLSPIIISLPFKLMLFVLID 233

Query: 233 GWSLLVENLVKSF 245
           GW+L+   LV+SF
Sbjct: 234 GWALVTSTLVRSF 246


>gi|197122898|ref|YP_002134849.1| flagellar biosynthesis protein FliP [Anaeromyxobacter sp. K]
 gi|196172747|gb|ACG73720.1| flagellar biosynthetic protein FliP [Anaeromyxobacter sp. K]
          Length = 236

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 87/206 (42%), Positives = 132/206 (64%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+ F + T LS A  LL+ VT F R +IV S LR  +G   VPPN V+I LAL ++F+VM
Sbjct: 34  VKLFLVLTALSFATALLVSVTSFTRIVIVLSFLRQALGTPQVPPNQVLIGLALVLSFFVM 93

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SPT  R     + P ++++I +  A++R + P   FM   TR++DL+LF +++ +    +
Sbjct: 94  SPTATRVYADALGPYLDDRIGQAEALERASGPVREFMLRQTRDQDLALFYEISATPRPAS 153

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                D I   I +P+FMISEL  +F +G  + +P L++D++V+ I+M+MGMMM+PPT I
Sbjct: 154 ----GDAIPMSIAVPAFMISELTTAFRMGLFLYVPLLLVDLLVSAILMSMGMMMVPPTLI 209

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           +LP K+  FV+ DGW L+V  L +SF
Sbjct: 210 ALPVKIGLFVMADGWRLVVGALARSF 235


>gi|157147125|ref|YP_001454444.1| flagellar biosynthesis protein FliP [Citrobacter koseri ATCC
           BAA-895]
 gi|157084330|gb|ABV14008.1| hypothetical protein CKO_02902 [Citrobacter koseri ATCC BAA-895]
          Length = 250

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 81/194 (41%), Positives = 120/194 (61%), Gaps = 10/194 (5%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           PI+++M+TCF RFIIV +ILR  +G+   PPN ++  +AL +T  VM P         I 
Sbjct: 61  PIMVLMMTCFTRFIIVLAILRQALGLQQSPPNKILTGIALALTLLVMRPVWTTIYTDAID 120

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA--HSSHRNTDITKNDHIEYR 170
           P   ++IT   A+ +   P   +M   T  K ++  M +A      R  D+T        
Sbjct: 121 PFQKDEITLKQALAKAEVPLKNYMLAQTNNKAMAQMMSIAGIEGDAREQDLT-------- 172

Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230
           I+ P++++SEL+ +F+IGF+I +PFL+ID+IVA+I+MAMGMMML P  +SLPFK++ FVL
Sbjct: 173 IVTPAYLLSELKTAFQIGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVL 232

Query: 231 IDGWSLLVENLVKS 244
            DGW+L+V  L  S
Sbjct: 233 CDGWTLIVGTLASS 246


>gi|116626498|ref|YP_828654.1| flagellar biosynthesis protein FliP [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229660|gb|ABJ88369.1| flagellar biosynthetic protein FliP [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 245

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/201 (36%), Positives = 131/201 (65%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T++++ P  ++ +T F R ++V   LR  +G  S P N V+I LALF+   VM P + 
Sbjct: 48  LLTLMTLLPAAVMSITPFLRIVVVLHFLRQALGTQSTPSNQVLIGLALFLALLVMQPVIA 107

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
                G +P+   Q++   A+++ + P   F+    REKD+ LF++++H+    T     
Sbjct: 108 DMYHQGWEPMEAGQLSPERALEQGSVPLHNFLAKFAREKDIHLFVEISHAPAPRTP---- 163

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
             +E ++LIP++++SEL+  F+IG ++ LPFLIID+++A++ +++GM+ LPP  IS PFK
Sbjct: 164 ADLEMKVLIPAYILSELKTGFQIGAVLFLPFLIIDLVIASVTLSIGMVQLPPVMISAPFK 223

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW+L+V +L++SF
Sbjct: 224 ILLFVLVDGWNLVVGSLMRSF 244


>gi|258622510|ref|ZP_05717532.1| flagellar assembly protein [Vibrio mimicus VM573]
 gi|262173376|ref|ZP_06041053.1| flagellar biosynthesis protein FliP [Vibrio mimicus MB-451]
 gi|258585210|gb|EEW09937.1| flagellar assembly protein [Vibrio mimicus VM573]
 gi|261890734|gb|EEY36721.1| flagellar biosynthesis protein FliP [Vibrio mimicus MB-451]
          Length = 252

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 83/202 (41%), Positives = 125/202 (61%), Gaps = 6/202 (2%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T LS  P  ++M T F R I+V +ILR  +G+   PPN V++ +AL +T  +M P   
Sbjct: 55  LMTALSFLPAFILMATSFTRIIVVLAILRQALGLQQTPPNRVLVGIALTLTLLIMRPVWT 114

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              +   QP  N +IT   A     +P   FM   T +  L   + +A     N  I +N
Sbjct: 115 DIYKNAFQPYDNGEITLVQAFSVAEKPVREFMLAQTHQNSLEQMLRIA-----NEPIDQN 169

Query: 165 -DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
            + I + I++P+F+ISEL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P  ISLPF
Sbjct: 170 VEDISFAIVLPAFVISELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPF 229

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K++ FVL+DGW++ V +L  SF
Sbjct: 230 KLVVFVLVDGWAMTVGSLSASF 251


>gi|260767960|ref|ZP_05876894.1| flagellar biosynthesis protein FliP [Vibrio furnissii CIP 102972]
 gi|260615990|gb|EEX41175.1| flagellar biosynthesis protein FliP [Vibrio furnissii CIP 102972]
          Length = 252

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 81/202 (40%), Positives = 124/202 (61%), Gaps = 6/202 (2%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T LS  P  ++M T F R I+V +ILR  +G+   PPN V++ +AL ++  +M P   
Sbjct: 54  LMTALSFLPAFILMATSFTRIIVVLAILRQALGLQQSPPNRVLVGIALALSLLIMRPVWS 113

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              E   +P    QIT   A     +P   FM   T++  L   + +A     N  + +N
Sbjct: 114 EVYEHAFKPYDQGQITLMQAFSVAEKPVRNFMLAQTQQSSLEQMLRIA-----NEPLDQN 168

Query: 165 -DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
            D I + +++P+F+ISEL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P  ISLPF
Sbjct: 169 VDDISFAVVLPAFVISELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPF 228

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K++ FVL+DGW++ V  L  SF
Sbjct: 229 KLVVFVLVDGWAMTVGTLSASF 250


>gi|258624667|ref|ZP_05719602.1| flagellar assembly protein [Vibrio mimicus VM603]
 gi|258583059|gb|EEW07873.1| flagellar assembly protein [Vibrio mimicus VM603]
          Length = 256

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 83/202 (41%), Positives = 125/202 (61%), Gaps = 6/202 (2%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T LS  P  ++M T F R I+V +ILR  +G+   PPN V++ +AL +T  +M P   
Sbjct: 59  LMTALSFLPAFILMATSFTRIIVVLAILRQALGLQQTPPNRVLVGIALTLTLLIMRPVWT 118

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              +   QP  N +IT   A     +P   FM   T +  L   + +A     N  I +N
Sbjct: 119 DIYKNAFQPYDNGEITLVQAFSVAEKPVREFMLAQTHQNSLEQMLRIA-----NEPIDQN 173

Query: 165 -DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
            + I + I++P+F+ISEL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P  ISLPF
Sbjct: 174 VEDISFAIVLPAFVISELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPF 233

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K++ FVL+DGW++ V +L  SF
Sbjct: 234 KLVVFVLVDGWAMTVGSLSASF 255


>gi|119899016|ref|YP_934229.1| flagellar biosynthesis protein FliP [Azoarcus sp. BH72]
 gi|119671429|emb|CAL95342.1| flagellar biosynthetic protein FliP [Azoarcus sp. BH72]
          Length = 258

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 91/206 (44%), Positives = 144/206 (69%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T  + T+LS  P L++M+T F R IIVFS+LR  +G  + PPN V++ LALF+TF++M
Sbjct: 55  VQTLALLTLLSFIPALVLMMTSFTRIIIVFSLLRQAIGTQTSPPNQVLLGLALFLTFFIM 114

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +P  D+      QP+   +I+   A++R   P   FM    RE DLSLF  +A    ++ 
Sbjct: 115 APVADKVYLEAYQPMSEGRISFEQALERATVPVKAFMLKQVREPDLSLFTGLA----KHP 170

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            + K + +  R+++P+F+ SEL+ +F+IGF++ +PF+IIDM+VA+++M+MGMMM+ P  +
Sbjct: 171 PVEKAEDLPMRVVVPAFVTSELKTAFQIGFIVFIPFIIIDMVVASVLMSMGMMMMSPVIV 230

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW+LL+ +LV+SF
Sbjct: 231 SLPFKIMLFVLVDGWTLLIGSLVQSF 256


>gi|310659027|ref|YP_003936748.1| flagellar export machinery protein [Clostridium sticklandii DSM
           519]
 gi|308825805|emb|CBH21843.1| component of the flagellar export machinery [Clostridium
           sticklandii]
          Length = 262

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 91/238 (38%), Positives = 154/238 (64%), Gaps = 13/238 (5%)

Query: 18  FAKSSLHDVMNI---------PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIV 68
           +A++   ++ +I         P DLS S   +    +FT+L++ P +LIM+T F R I++
Sbjct: 27  YAENLTTNIPDISLEINGSENPRDLSNS---IEMLMLFTVLTLLPSILIMMTSFTRVIVI 83

Query: 69  FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128
            S L+  MG+    P+ VI+ L+LF+TF++M+P         ++P  +N+IT+  A +  
Sbjct: 84  LSFLKNAMGVQQAIPSQVIVGLSLFLTFFIMAPVGSEVYSEALRPYFDNEITQEEAFETA 143

Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSH-RNTDITKNDHIEYRILIPSFMISELRRSFEI 187
             P   FM   TREKD+ LFMD++ +    N++    ++I   ++IP+F+ISEL+  F++
Sbjct: 144 MVPVREFMMKQTREKDIKLFMDLSKNEELANSEDLVLENIPNTVIIPAFIISELKTGFQV 203

Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GFL+ +PF++IDM+VA+ +M+MGMMMLPP  ISLPFK++ FVL+DGW +++++++  F
Sbjct: 204 GFLLFIPFIVIDMVVASTLMSMGMMMLPPMMISLPFKILLFVLVDGWDMVIKSIIVGF 261


>gi|315179664|gb|ADT86578.1| flagellar biosynthesis protein FliP [Vibrio furnissii NCTC 11218]
          Length = 252

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 81/202 (40%), Positives = 124/202 (61%), Gaps = 6/202 (2%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T LS  P  ++M T F R I+V +ILR  +G+   PPN V++ +AL ++  +M P   
Sbjct: 54  LMTALSFLPAFILMATSFTRIIVVLAILRQALGLQQSPPNRVLVGIALALSLLIMRPVWS 113

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              E   +P    QIT   A     +P   FM   T++  L   + +A     N  + +N
Sbjct: 114 EVYEHAFKPYDQGQITLMQAFSVAEKPVRNFMLAQTQQSSLEQMLRIA-----NEPLDQN 168

Query: 165 -DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
            D I + +++P+F+ISEL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P  ISLPF
Sbjct: 169 VDDISFAVVLPAFVISELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPF 228

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K++ FVL+DGW++ V  L  SF
Sbjct: 229 KLVVFVLVDGWAMTVGTLSASF 250


>gi|306820131|ref|ZP_07453779.1| flagellar biosynthetic protein FliP [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551909|gb|EFM39852.1| flagellar biosynthetic protein FliP [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 264

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 84/200 (42%), Positives = 138/200 (69%)

Query: 46  FTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDR 105
           FT+LS+ P +LIM+TCF R +++ S L+  +G     P+ V++ LALF+TF++M+P   +
Sbjct: 64  FTLLSVLPSILIMMTCFTRIVVILSFLKQAIGAQQTIPSQVMVGLALFLTFFIMAPVGKQ 123

Query: 106 SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165
           + + G++P  + QI +  A++ V +P   FM   TR+ D+ LF++++       D    +
Sbjct: 124 AYDGGLKPYFDKQIKQEQAVENVMKPVREFMFKQTRQSDIKLFLELSKDEQLKKDNVTLE 183

Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225
           +I   +LIP+F ISEL+  F+IGFL+ +PF+IIDM+V++ +M+MGMMMLPP  IS+PFK+
Sbjct: 184 NIPNSVLIPAFCISELKTGFQIGFLLFIPFIIIDMVVSSTLMSMGMMMLPPMMISMPFKL 243

Query: 226 IFFVLIDGWSLLVENLVKSF 245
           + FVL+DGW L++ ++V  F
Sbjct: 244 LLFVLVDGWDLVIRSIVMGF 263


>gi|254444823|ref|ZP_05058299.1| flagellar biosynthetic protein FliP [Verrucomicrobiae bacterium
           DG1235]
 gi|198259131|gb|EDY83439.1| flagellar biosynthetic protein FliP [Verrucomicrobiae bacterium
           DG1235]
          Length = 257

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 81/194 (41%), Positives = 131/194 (67%), Gaps = 5/194 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
            P +++++T F R IIV   +RT +G+   P N +I+ L+L +TF++M P L    +  +
Sbjct: 67  GPSIVVLMTSFTRIIIVLGFVRTAIGVHQAPSNQIIVGLSLIITFFIMQPVLSNVNDNAL 126

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           QPLM  +IT   A +  + P   FM N TR +D+  F+D++     N   T    +  R+
Sbjct: 127 QPLMAKEITTAQAFEAGSGPLREFMLNQTRLQDIEFFLDLS-----NYGPTTASELPMRV 181

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           ++P+F++SE+R +F++GFLI LPF+++D +V T +MAMGMMM+PP  ISLPFK++ FVL+
Sbjct: 182 VVPAFVMSEIRTAFKMGFLIFLPFIMVDFLVGTTLMAMGMMMMPPVVISLPFKLLLFVLV 241

Query: 232 DGWSLLVENLVKSF 245
           DGW+L++++LV+SF
Sbjct: 242 DGWTLVIKSLVQSF 255


>gi|329889296|ref|ZP_08267639.1| hypothetical protein BDIM_09760 [Brevundimonas diminuta ATCC 11568]
 gi|328844597|gb|EGF94161.1| hypothetical protein BDIM_09760 [Brevundimonas diminuta ATCC 11568]
          Length = 219

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 81/206 (39%), Positives = 129/206 (62%), Gaps = 10/206 (4%)

Query: 48  ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107
           +L++AP + +MVT F + ++V S+LR  +G+  VPPN+V+  +AL +T YVM P   R  
Sbjct: 17  LLALAPFVAVMVTSFTKIVVVLSLLRNALGLQQVPPNIVLNGMALILTLYVMFPVGQRMA 76

Query: 108 EMGIQPLMNNQITETTAI----QRVAEPFWVFMRNNTREKDLSLFMDMAH---SSHRNTD 160
           E          +++T  +        EP   F+  ++ E++ + F+  A    +  +  +
Sbjct: 77  EATNHMPPTAALSDTQQLFAYADSAKEPLRDFLIKHSSERERAFFLRTAQRISTPEKRAE 136

Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
           IT  D   + +++P+F +SEL  +F+IGFLI LPFLIID++V+ I++AMGMMML PT++S
Sbjct: 137 ITARD---FLVVVPAFTVSELATAFQIGFLIFLPFLIIDLVVSNILLAMGMMMLSPTTVS 193

Query: 221 LPFKVIFFVLIDGWSLLVENLVKSFI 246
           LPFK++ FVLIDGW  L   LV S++
Sbjct: 194 LPFKLLLFVLIDGWVKLSHGLVLSYV 219


>gi|269796382|ref|YP_003315837.1| flagellar biosynthetic protein FliP [Sanguibacter keddieii DSM
           10542]
 gi|269098567|gb|ACZ23003.1| flagellar biosynthetic protein FliP [Sanguibacter keddieii DSM
           10542]
          Length = 283

 Score =  155 bits (392), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 91/210 (43%), Positives = 138/210 (65%), Gaps = 5/210 (2%)

Query: 36  STWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMT 95
           S+ IV   GI T+LS+AP LL+M+T F +  +V ++ R  +G+  VPPN V+  LALF++
Sbjct: 78  SSSIVVLLGI-TLLSVAPSLLLMMTSFTKIFVVLALTRNALGLQGVPPNQVLAGLALFLS 136

Query: 96  FYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSS 155
            ++M+P + +  E+G+QP +N  +    A++  + P   FM   TRE+D++L    A   
Sbjct: 137 LFIMAPIIGQVNELGVQPYVNGGLDFGAAVEAGSAPLREFMLGQTREEDIALMTRAADQP 196

Query: 156 HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
           +     T    +    LIPSFM+SELR +F IGF+I +PFL+ID++V+  +M+MGMMMLP
Sbjct: 197 NP----TDPSTVPMLTLIPSFMLSELRAAFIIGFVIFIPFLVIDLVVSASLMSMGMMMLP 252

Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           P  ISLPFK++ FVL+DGW ++V  LV S+
Sbjct: 253 PVMISLPFKILLFVLVDGWGMIVTALVGSY 282


>gi|28901397|ref|NP_801052.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153835929|ref|ZP_01988596.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus
           AQ3810]
 gi|260362951|ref|ZP_05775820.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus K5030]
 gi|260880238|ref|ZP_05892593.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus
           AN-5034]
 gi|260895355|ref|ZP_05903851.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus
           Peru-466]
 gi|28809944|dbj|BAC62885.1| putative flagellar assembly protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149750683|gb|EDM61428.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus
           AQ3810]
 gi|308085562|gb|EFO35257.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus
           Peru-466]
 gi|308092077|gb|EFO41772.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus
           AN-5034]
 gi|308112304|gb|EFO49844.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus K5030]
 gi|328469331|gb|EGF40277.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus 10329]
          Length = 252

 Score =  155 bits (391), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 80/201 (39%), Positives = 122/201 (60%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T LS  P  ++M T F R I+V +ILR  +G+   PPN V++ +AL +T  +M P   
Sbjct: 55  LMTALSFLPAFILMATSFTRIIVVLAILRQALGLQQSPPNRVLVGIALTLTLLIMRPVWT 114

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              E   QP  N +IT   A     +P   FM   T +  L   + +A+         K 
Sbjct: 115 DIYENAFQPYDNGEITLVQAFSVAEKPVRNFMLAQTHQSSLEQMLRIANEPLDQ----KV 170

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           + I + +++P+F+ISEL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P  +SLPFK
Sbjct: 171 EDISFAVVLPAFVISELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIVSLPFK 230

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW++ V  L  SF
Sbjct: 231 LVVFVLVDGWAMTVGTLSASF 251


>gi|260901180|ref|ZP_05909575.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus
           AQ4037]
 gi|308109389|gb|EFO46929.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus
           AQ4037]
          Length = 252

 Score =  155 bits (391), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 80/201 (39%), Positives = 122/201 (60%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T LS  P  ++M T F R I+V +ILR  +G+   PPN V++ +AL +T  +M P   
Sbjct: 55  LMTALSFLPAFILMATSFTRIIVVLAILRQALGLQQSPPNRVLVGIALTLTLLIMRPVWT 114

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              E   QP  N +IT   A     +P   FM   T +  L   + +A+         K 
Sbjct: 115 DIYENAFQPYDNGEITLVQAFSVAEKPVRNFMLAQTHQSSLEQMLRIANEPLDQ----KL 170

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           + I + +++P+F+ISEL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P  +SLPFK
Sbjct: 171 EDISFAVVLPAFVISELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIVSLPFK 230

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW++ V  L  SF
Sbjct: 231 LVVFVLVDGWAMTVGTLSASF 251


>gi|91223205|ref|ZP_01258471.1| putative flagellar assembly protein [Vibrio alginolyticus 12G01]
 gi|269967106|ref|ZP_06181173.1| flagellar assembly protein [Vibrio alginolyticus 40B]
 gi|91192018|gb|EAS78281.1| putative flagellar assembly protein [Vibrio alginolyticus 12G01]
 gi|269828243|gb|EEZ82510.1| flagellar assembly protein [Vibrio alginolyticus 40B]
          Length = 252

 Score =  155 bits (391), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 79/202 (39%), Positives = 124/202 (61%), Gaps = 6/202 (2%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T LS  P  ++M T F R ++V +ILR  +G+   PPN V++ +AL +T  +M P   
Sbjct: 55  LMTALSFLPAFILMATSFTRIVVVLAILRQALGLQQSPPNRVLVGIALALTLLIMRPVWS 114

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              E   QP  N +IT   A     +P   FM   T +  L   + +A     N  + +N
Sbjct: 115 DIYENAFQPYDNGEITLIQAFSVAEKPVREFMLAQTHQSSLEQMLRIA-----NEPLDQN 169

Query: 165 -DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
            + I + +++P+F+ISEL+ +F+IGF++ +PFL+ID++VA+++MAMGMMML P  +SLPF
Sbjct: 170 VEDISFAVVLPAFVISELKTAFQIGFMLFIPFLVIDLVVASVLMAMGMMMLSPLIVSLPF 229

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K++ FVL+DGW++ V  L  SF
Sbjct: 230 KLVVFVLVDGWAMTVGTLSASF 251


>gi|225871936|ref|YP_002753390.1| flagellar biosynthetic protein FliP [Acidobacterium capsulatum ATCC
           51196]
 gi|225794472|gb|ACO34562.1| flagellar biosynthetic protein FliP [Acidobacterium capsulatum ATCC
           51196]
          Length = 228

 Score =  154 bits (390), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 78/201 (38%), Positives = 122/201 (60%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T++++ P +LI +T   R ++VF  LR  +G  + P N V++ L L MT+++M P L 
Sbjct: 32  VLTLITVLPAILISITPMVRLLVVFHFLRQALGTQTAPSNQVLLGLGLMMTWFLMQPVLT 91

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +  +  ++P    QI+   A++R   P   FM     EKDL LF   A +S      T+ 
Sbjct: 92  QIDQQAVEPYRAGQISGMQALERATAPPKAFMLRYASEKDLELF---AAASMVKRPATRA 148

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D +    +IP++M+SEL+  FEIG ++ LPFL++DM+VA I  ++GM  LPP  IS P K
Sbjct: 149 D-LPLSAVIPAYMLSELKAGFEIGAILFLPFLLVDMVVAAITTSIGMFQLPPVVISTPLK 207

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FV++DGW LL  +L+KSF
Sbjct: 208 ILLFVMVDGWHLLAASLLKSF 228


>gi|78485085|ref|YP_391010.1| flagellar biosynthesis protein FliP [Thiomicrospira crunogena
           XCL-2]
 gi|78363371|gb|ABB41336.1| flagellar biosynthetic protein FliP [Thiomicrospira crunogena
           XCL-2]
          Length = 252

 Score =  154 bits (390), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 86/194 (44%), Positives = 127/194 (65%), Gaps = 5/194 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P  LI +T F R ++V ++LR  +G    P N V+I LALF+T ++MSP LD+  +  + 
Sbjct: 58  PAALIAMTSFLRIVVVLALLRQALGTMQTPSNQVLIGLALFLTLFIMSPVLDKIYDTAVS 117

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P +  QI    AI     P   FM   TR  DL +F +MA     +  +T  + + +++L
Sbjct: 118 PYLEEQIKFKEAIDVAKTPIHQFMIQQTRADDLGMFAEMA-----DIQLTDPESVPFKVL 172

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           IP++M SEL+ +F+IGF+I +PFLIID++VAT++M+MGMMML P  ISLPFK++ FVLID
Sbjct: 173 IPAYMTSELKTAFQIGFMIFIPFLIIDLVVATLLMSMGMMMLSPMIISLPFKIMLFVLID 232

Query: 233 GWSLLVENLVKSFI 246
           GW+L++  L  SF+
Sbjct: 233 GWALIMGTLANSFV 246


>gi|254228804|ref|ZP_04922227.1| flagellar biosynthetic protein FliP [Vibrio sp. Ex25]
 gi|262396477|ref|YP_003288330.1| flagellar biosynthesis protein FliP [Vibrio sp. Ex25]
 gi|151938751|gb|EDN57586.1| flagellar biosynthetic protein FliP [Vibrio sp. Ex25]
 gi|262340071|gb|ACY53865.1| flagellar biosynthesis protein FliP [Vibrio sp. Ex25]
          Length = 252

 Score =  154 bits (390), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 79/201 (39%), Positives = 122/201 (60%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T LS  P  ++M T F R I+V +ILR  +G+   PPN V++ +AL +T  +M P   
Sbjct: 55  LMTALSFLPAFILMATSFTRIIVVLAILRQALGLQQSPPNRVLVGIALALTLLIMRPVWS 114

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              E   QP  N +IT   A     +P   FM   T +  L   + +A+         K 
Sbjct: 115 DIHENAFQPYDNGEITLIQAFSVAEKPVREFMLAQTHQSSLEQMLRIANEPLDQ----KV 170

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           + I + +++P+F+ISEL+ +F+IGF++ +PFL+ID++VA+++MAMGMMML P  +SLPFK
Sbjct: 171 EDISFAVVLPAFVISELKTAFQIGFMLFIPFLVIDLVVASVLMAMGMMMLSPLIVSLPFK 230

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW++ V  L  SF
Sbjct: 231 LVVFVLVDGWAMTVGTLSASF 251


>gi|149908778|ref|ZP_01897438.1| putative flagellar assembly protein [Moritella sp. PE36]
 gi|149808052|gb|EDM67993.1| putative flagellar assembly protein [Moritella sp. PE36]
          Length = 246

 Score =  154 bits (390), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 78/193 (40%), Positives = 122/193 (63%), Gaps = 4/193 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +L+M+T F R ++V +ILR  +G+   PPN V++ +AL +T  +M P   +  E    
Sbjct: 56  PAMLLMLTSFTRIVVVLAILRQAIGLQQSPPNRVLVGIALTLTILIMRPVWTQIHEDAFL 115

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P  +  +T   A+ +   P   FM   TRE DL   + + +       +T  D I + +L
Sbjct: 116 PYDSGSMTLIEALGKAEIPLRTFMLKQTRETDLEQMLKIGN----EPPVTSVDDIPFVVL 171

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           +P+F++SEL+ +F+IGF++ LPFL+ID++VA+++MAMGMMML P  ISLPFK++ FVL+D
Sbjct: 172 MPAFVLSELKTAFQIGFMLFLPFLVIDLVVASVLMAMGMMMLSPLIISLPFKLMIFVLVD 231

Query: 233 GWSLLVENLVKSF 245
           GW++ V  L  SF
Sbjct: 232 GWAMTVGTLTASF 244


>gi|220917690|ref|YP_002492994.1| flagellar biosynthetic protein FliP [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219955544|gb|ACL65928.1| flagellar biosynthetic protein FliP [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 236

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 86/206 (41%), Positives = 131/206 (63%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+ F + T LS A  LL+ VT F R +IV S LR  +G   VPPN V+I LAL ++ +VM
Sbjct: 34  VKLFLVLTALSFATALLVSVTSFTRIVIVLSFLRQALGTPQVPPNQVLIGLALVLSCFVM 93

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SPT  R     + P ++++I +  A++R + P   FM   TR++DL+LF +++ +    +
Sbjct: 94  SPTATRVYGDALGPYLDDRIGQAEALERASGPVREFMLRQTRDQDLALFYEISATPRPAS 153

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                D I   I +P+FMISEL  +F +G  + +P L++D++V+ I+M+MGMMM+PPT I
Sbjct: 154 ----GDAIPMSIAVPAFMISELTTAFRMGLFLYVPLLLVDLLVSAILMSMGMMMVPPTLI 209

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           +LP K+  FV+ DGW L+V  L +SF
Sbjct: 210 ALPVKIGLFVMADGWRLVVGALARSF 235


>gi|86157788|ref|YP_464573.1| flagellar biosynthesis protein FliP [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85774299|gb|ABC81136.1| flagellar biosynthetic protein FliP [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 236

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 85/206 (41%), Positives = 130/206 (63%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+ F + T LS A  LL+ VT F R +IV S LR  +G   VPPN V++ LAL ++ +VM
Sbjct: 34  VKLFLVLTALSFATALLVSVTSFTRIVIVLSFLRQALGTPQVPPNQVLVGLALVLSCFVM 93

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SPT  R     + P ++++I +  A++R + P   FM   TR++DL+LF +++ +     
Sbjct: 94  SPTATRVYADALGPYLDDRIGQAEALERASGPVREFMLRQTRDQDLALFYEISATPRP-- 151

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                D I   I +P+FMISEL  +F +G  + +P L++D++V+ I+M+MGMMM+PPT I
Sbjct: 152 --AAGDAIPMSIAVPAFMISELTTAFRMGLFLYVPLLLVDLLVSAILMSMGMMMVPPTLI 209

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           +LP K+  FV+ DGW L+V  L +SF
Sbjct: 210 ALPVKIGLFVMADGWRLVVGALARSF 235


>gi|94500290|ref|ZP_01306823.1| Flagellar transport protein FliP [Oceanobacter sp. RED65]
 gi|94427589|gb|EAT12566.1| Flagellar transport protein FliP [Oceanobacter sp. RED65]
          Length = 251

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 87/206 (42%), Positives = 132/206 (64%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   I TIL++ P L+IM+T F R I+VF+ILR  +G+   P N +++ L LF+T ++M
Sbjct: 48  IQILAIMTILTVLPSLVIMMTSFTRIIVVFAILRQALGLQQTPSNQILLGLTLFLTLFIM 107

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P  +   E  IQP +  +I    A+     P   FM    RE DL++F+ ++  +   T
Sbjct: 108 MPIFNVINETAIQPYLEEKILPKEALDLAIIPIKEFMLAQVRETDLNMFVRLSGETGIQT 167

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +    HI    LIP+F+ SEL+ +F+IGF+I +PFLIID++VA+I+MAMGMMML P  I
Sbjct: 168 PMDTPLHI----LIPAFITSELKTAFQIGFMIFIPFLIIDLVVASILMAMGMMMLSPIII 223

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW +++  L  S+
Sbjct: 224 SLPFKIMLFVLVDGWVMIIGTLAASY 249


>gi|303326581|ref|ZP_07357024.1| flagellar biosynthetic protein FliP [Desulfovibrio sp. 3_1_syn3]
 gi|302864497|gb|EFL87428.1| flagellar biosynthetic protein FliP [Desulfovibrio sp. 3_1_syn3]
          Length = 225

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/203 (43%), Positives = 138/203 (67%), Gaps = 6/203 (2%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T+LS+AP +++ VT F R IIVFS LR  MG+  +PP  ++ SLA+FMT  +M P   
Sbjct: 27  LLTVLSVAPAIMLTVTSFTRIIIVFSFLRQAMGVQQLPPTQILASLAIFMTVVIMFPVGK 86

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +  +  +QP +N QI    A+ R   P   FM  +TREKDLS+F  +        ++ KN
Sbjct: 87  QINDQALQPYLNEQIDYKVALDRAQAPLRTFMFKHTREKDLSVFYAITQ-----MELPKN 141

Query: 165 -DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
            + +   +L  +++ISEL+ +F IGFLI +PFL++DM+++++++AMGMMMLPP  +S+PF
Sbjct: 142 KEEVPTMLLAAAYVISELKTAFTIGFLIYIPFLVLDMVISSVLLAMGMMMLPPMMVSMPF 201

Query: 224 KVIFFVLIDGWSLLVENLVKSFI 246
           K++ FV++DGW+LLV +LV SF+
Sbjct: 202 KLLLFVMVDGWNLLVGSLVNSFL 224


>gi|237653572|ref|YP_002889886.1| flagellar biosynthesis protein FliP [Thauera sp. MZ1T]
 gi|237624819|gb|ACR01509.1| flagellar biosynthetic protein FliP [Thauera sp. MZ1T]
          Length = 257

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 95/227 (41%), Positives = 150/227 (66%), Gaps = 6/227 (2%)

Query: 21  SSLHDVMNIPADLSISTW--IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
            +L  +   PA    +T+   ++T  + T+LS  P L++M TCF R +IVFS+LR  MG 
Sbjct: 33  QALPALTTSPAAGGGTTYSLTIQTLMLMTLLSFIPALVLMTTCFTRIVIVFSLLRQAMGT 92

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
            + PPN V++ LALF+TF+VM+P  +R       P+   +I    A++R + P   FM  
Sbjct: 93  QTAPPNQVLLGLALFLTFFVMAPVGERVYTEAYLPMSEGRIQFDEALERASVPVKGFMLK 152

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
             RE DL+LF  +A    +   + K + +  R++IP+F+ SEL+ +F+IGF++ +PF+II
Sbjct: 153 QVREPDLALFAGLA----KLPPVDKAEDLPMRVVIPAFVTSELKTAFQIGFIVFIPFIII 208

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           DM+VA+++M+MGMMM+ P  +SLPFK++ FVL+DGW+LL+ +LV+SF
Sbjct: 209 DMVVASVLMSMGMMMMSPVIVSLPFKIMLFVLVDGWTLLIGSLVQSF 255


>gi|90415342|ref|ZP_01223276.1| Flagella transport protein FliP family protein [marine gamma
           proteobacterium HTCC2207]
 gi|90332665|gb|EAS47835.1| Flagella transport protein FliP family protein [marine gamma
           proteobacterium HTCC2207]
          Length = 256

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/185 (44%), Positives = 124/185 (67%), Gaps = 4/185 (2%)

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R IIVFS+LR  +G    PPN V++ LALF+T ++MSP L    +  I P    QI+
Sbjct: 73  SFVRIIIVFSLLRQALGTAQTPPNQVLVGLALFLTLFIMSPVLTSVYDDAITPYFEEQIS 132

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
             TA+     P   FM N TRE D+ +F+++A     NT++ +   + +  L+P+F+ SE
Sbjct: 133 FETAVAAAEAPVRTFMLNQTRESDIGMFLEIAD----NTEVIEPADVPFLTLVPAFITSE 188

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +F IGFLI +PF+IID++VA+++M+MGMMML P  IS+PFK++ FVL+DGW+L++ +
Sbjct: 189 LKSAFSIGFLIYIPFVIIDLVVASVLMSMGMMMLSPMMISMPFKLMLFVLVDGWTLIMGS 248

Query: 241 LVKSF 245
           L  SF
Sbjct: 249 LTASF 253


>gi|296125240|ref|YP_003632492.1| flagellar biosynthetic protein FliP [Brachyspira murdochii DSM
           12563]
 gi|296017056|gb|ADG70293.1| flagellar biosynthetic protein FliP [Brachyspira murdochii DSM
           12563]
          Length = 262

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 83/208 (39%), Positives = 132/208 (63%), Gaps = 7/208 (3%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + TILS++P ++IM T F R  IV S ++  + +   PP  +I+ L+LF+TF++M PTL 
Sbjct: 54  LLTILSLSPSIIIMTTSFIRVSIVLSFVQRALSLQETPPRALIMGLSLFLTFFIMMPTLT 113

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE----KDLSLFMDMAHSSHRNTD 160
           +     +QP +N  I       R  +P  +FM N+ R     K L LF+ ++ ++ R  D
Sbjct: 114 QVNNEALQPYLNGSIGVNELYSRGIQPIRMFMFNSLRGENGMKSLDLFLSISDTNIRLRD 173

Query: 161 ITKND---HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
           I   D    I   +++P+F+I+EL  +F++G  + +PF++ID++VA+I+MAMGM+MLPP 
Sbjct: 174 IQTVDDLNRIPTIVVVPAFIINELTIAFKMGIYLFIPFIVIDLVVASILMAMGMIMLPPI 233

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
            ISLP K+I FV +DGW LL+  +V+SF
Sbjct: 234 MISLPLKIILFVAVDGWKLLILQIVQSF 261


>gi|89072284|ref|ZP_01158863.1| putative flagellar assembly protein [Photobacterium sp. SKA34]
 gi|89051816|gb|EAR57268.1| putative flagellar assembly protein [Photobacterium sp. SKA34]
          Length = 263

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 84/201 (41%), Positives = 123/201 (61%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T LS  P  L+M T F R IIV SILR  +G+   PPN +++ +AL +T  +M P   
Sbjct: 66  LMTALSFIPAFLLMATSFTRIIIVLSILRQALGLQQSPPNRILVGIALSLTILIMRPVWT 125

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              +    P  N  IT   A     +P   FM   T +  L   M +A+    + D+   
Sbjct: 126 DVYDNAFVPYDNGDITLLQAFDTAEKPVRDFMLKQTHQSALEQMMRIANEP-LDQDV--- 181

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           ++I + I++P+F+ISEL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P  ISLPFK
Sbjct: 182 ENISFAIVLPAFVISELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK 241

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           +I FVL DGW++ V +L  SF
Sbjct: 242 LIVFVLADGWTMTVGSLSASF 262


>gi|149184188|ref|ZP_01862506.1| flagellar biosynthetic protein FliP [Erythrobacter sp. SD-21]
 gi|148831508|gb|EDL49941.1| flagellar biosynthetic protein FliP [Erythrobacter sp. SD-21]
          Length = 255

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 80/188 (42%), Positives = 127/188 (67%), Gaps = 4/188 (2%)

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           M+T F R I+V +ILR  +G+   PPN V+I ++LF++ ++M+PTL+R  E  I P    
Sbjct: 71  MMTSFTRIIVVLAILRQALGLQQSPPNQVLIGISLFLSLFIMTPTLERVNEAAIAPYSAG 130

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
           +I    AI+R  + F  FM   TRE DL +F D+A +            + + IL+P+F+
Sbjct: 131 EIGAEVAIERAGDQFHAFMIRQTREYDLEMFADIAGAGQ----FASPQDVPFSILLPAFV 186

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
            SEL+ +F+IGF++ LPFL+ID++V++++M++GMMM+ P  +SLPFK++ FVL+DGW+LL
Sbjct: 187 TSELKTAFQIGFMLFLPFLVIDLVVSSVLMSLGMMMMSPMMVSLPFKLLLFVLVDGWALL 246

Query: 238 VENLVKSF 245
           + +L  SF
Sbjct: 247 MGSLAASF 254


>gi|269960157|ref|ZP_06174533.1| flagellar assembly protein [Vibrio harveyi 1DA3]
 gi|269835128|gb|EEZ89211.1| flagellar assembly protein [Vibrio harveyi 1DA3]
          Length = 255

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 81/202 (40%), Positives = 124/202 (61%), Gaps = 6/202 (2%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T LS  P  ++M T F R I+V +ILR  +G+   PPN V++ +AL +T  +M P   
Sbjct: 58  LMTALSFLPAFILMATSFTRIIVVLAILRQALGLQQSPPNRVLVGIALALTLLIMRPVWT 117

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              +   +P  N +IT   A     +P   FM   T +  L   + +A     N  I +N
Sbjct: 118 DIHDNAFKPYDNGEITLMQAFSVAEKPVRNFMLAQTHQSSLEQMLRIA-----NEPIDQN 172

Query: 165 -DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
            + I + +++P+F+ISEL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P  ISLPF
Sbjct: 173 VEDISFAVVLPAFVISELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPF 232

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K++ FVL+DGW++ V  L  SF
Sbjct: 233 KLVVFVLVDGWAMTVGTLSASF 254


>gi|300871793|ref|YP_003786666.1| flagellar biosynthesis protein FliP [Brachyspira pilosicoli
           95/1000]
 gi|300689494|gb|ADK32165.1| flagellar biosynthesis protein, FliP [Brachyspira pilosicoli
           95/1000]
          Length = 266

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 83/208 (39%), Positives = 132/208 (63%), Gaps = 7/208 (3%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + TILS++P ++IM T F R  IV S ++  + +   PP  +I+ L+LF+TF++M PTL 
Sbjct: 58  LLTILSLSPSIIIMTTSFVRVSIVLSFVQRALSLQETPPRALIMGLSLFLTFFIMMPTLT 117

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE----KDLSLFMDMAHSSHRNTD 160
           +     +QP +N  I       R  +P  +FM N+ R     K L LF+ ++ ++ R  D
Sbjct: 118 QINNEALQPYLNGTIGVNDLYSRGIQPIRMFMFNSLRGENGMKSLDLFLSISDTNVRLRD 177

Query: 161 ITKND---HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
           I   +    I   +++P+F+I+EL  +F++G  + +PF++ID++VA+I+MAMGM+MLPP 
Sbjct: 178 IQSVEDLAKIPTIVVVPAFIINELTIAFKMGIYLFVPFIVIDLVVASILMAMGMIMLPPI 237

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
            ISLP K+I FV +DGW LL+  LV+SF
Sbjct: 238 MISLPLKIILFVAVDGWKLLILQLVQSF 265


>gi|320175462|gb|EFW50561.1| Flagellar biosynthesis protein FliP [Shigella dysenteriae CDC
           74-1112]
          Length = 220

 Score =  152 bits (384), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 91/239 (38%), Positives = 135/239 (56%), Gaps = 34/239 (14%)

Query: 9   LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66
           L+LVTP L FA+  L  + + P      +W   V+T    T L+  P +L+M+T F R I
Sbjct: 12  LWLVTP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +I+   A++
Sbjct: 69  IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           + A+P   FM   TRE DL LF  +A++      +   + +  RIL+P+++ SEL     
Sbjct: 129 KGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSEL----- 179

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
                               MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 180 --------------------MALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 218


>gi|90577375|ref|ZP_01233186.1| putative flagellar assembly protein [Vibrio angustum S14]
 gi|90440461|gb|EAS65641.1| putative flagellar assembly protein [Vibrio angustum S14]
          Length = 243

 Score =  152 bits (384), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 84/201 (41%), Positives = 122/201 (60%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T LS  P  L+M T F R IIV SILR  +G+   PPN +++ +AL +T  +M P   
Sbjct: 46  LMTALSFIPAFLLMATSFTRIIIVLSILRQALGLQQSPPNRILVGIALSLTILIMRPVWT 105

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              +    P  N  IT   A     +P   FM   T +  L   M +A+    + D+   
Sbjct: 106 DVYDNAFVPYDNGDITLLQAFDTAEKPVRDFMLKQTHQSALEQMMRIANEP-LDQDV--- 161

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           + I + I++P+F+ISEL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P  ISLPFK
Sbjct: 162 EDISFAIVLPAFVISELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK 221

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           +I FVL DGW++ V +L  SF
Sbjct: 222 LIVFVLADGWTMTVGSLSASF 242


>gi|153831725|ref|ZP_01984392.1| flagellar biosynthetic protein FliP [Vibrio harveyi HY01]
 gi|148872235|gb|EDL71052.1| flagellar biosynthetic protein FliP [Vibrio harveyi HY01]
          Length = 259

 Score =  152 bits (384), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 81/202 (40%), Positives = 124/202 (61%), Gaps = 6/202 (2%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T LS  P  ++M T F R I+V +ILR  +G+   PPN V++ +AL +T  +M P   
Sbjct: 62  LMTALSFLPAFILMATSFTRIIVVLAILRQALGLQQSPPNRVLVGIALALTLLIMRPVWT 121

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              +   +P  N +IT   A     +P   FM   T +  L   + +A     N  I +N
Sbjct: 122 DIHDNAFKPYDNGEITLMQAFSVAEKPVRNFMLAQTHQSSLEQMLRIA-----NEPIDQN 176

Query: 165 -DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
            + I + +++P+F+ISEL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P  ISLPF
Sbjct: 177 VEDISFAVVLPAFVISELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPF 236

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K++ FVL+DGW++ V  L  SF
Sbjct: 237 KLVVFVLVDGWAMTVGTLSASF 258


>gi|260779323|ref|ZP_05888215.1| flagellar biosynthesis protein FliP [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605487|gb|EEX31782.1| flagellar biosynthesis protein FliP [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 252

 Score =  152 bits (384), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 79/201 (39%), Positives = 123/201 (61%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T LS  P  ++M T F R I+V +ILR  +G+   PPN V++ +AL ++  +M P   
Sbjct: 55  LMTALSFLPAFILMATSFTRIIVVLAILRQALGLQQSPPNRVLVGIALALSLLIMRPVWT 114

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              +   QP  N +IT   A     +P   FM   T++  L   + +A+        T  
Sbjct: 115 DIYQNAFQPYDNGEITLMQAFSVAEKPVRNFMLAQTQQTSLEQMLRIANEPLD----TAL 170

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           + I + +++P+F+ISEL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P  ISLPFK
Sbjct: 171 EDISFAVVLPAFVISELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK 230

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW++ V  L  SF
Sbjct: 231 LVVFVLVDGWAMTVGTLSASF 251


>gi|296124299|ref|YP_003632077.1| flagellar biosynthetic protein FliP [Planctomyces limnophilus DSM
           3776]
 gi|296016639|gb|ADG69878.1| flagellar biosynthetic protein FliP [Planctomyces limnophilus DSM
           3776]
          Length = 339

 Score =  152 bits (384), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 89/215 (41%), Positives = 127/215 (59%), Gaps = 15/215 (6%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T+L++AP +L+M TCF RF+IV  +LR  +G   +PPN VI SL LF+TF VM+P   
Sbjct: 120 LLTVLTLAPSILMMTTCFIRFVIVLGLLRQALGTQQLPPNQVITSLCLFLTFLVMAPIWQ 179

Query: 105 RSIEMGIQPLM-----NNQITETTAIQRVAEPFWVFMRNNTREKDLS----LFMDMAHSS 155
            + E GI+P          I E TA  R   P   FM         S    +F+D     
Sbjct: 180 EAYEAGIRPYTAPRAGEAAIDEWTAFNRTLVPIRRFMAEQIDRTGSSDSVWMFIDFMRPP 239

Query: 156 HRN------TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
             +       + T  + +    L+P++++SEL+ SF I F I LPFLIIDM++++I+++M
Sbjct: 240 QDSPALSTWKEPTTYEDVPLVALLPAYVLSELKVSFLIAFQIYLPFLIIDMVISSILISM 299

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           GMMMLPP  ISLPFK++ FV+IDGW L V  L++S
Sbjct: 300 GMMMLPPVLISLPFKLLLFVMIDGWFLTVGMLLES 334


>gi|163800128|ref|ZP_02194029.1| putative flagellar assembly protein [Vibrio sp. AND4]
 gi|159175571|gb|EDP60365.1| putative flagellar assembly protein [Vibrio sp. AND4]
          Length = 255

 Score =  152 bits (384), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 81/202 (40%), Positives = 124/202 (61%), Gaps = 6/202 (2%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T LS  P  ++M T F R I+V +ILR  +G+   PPN V++ +AL +T  +M P   
Sbjct: 58  LMTALSFLPAFILMATSFTRIIVVLAILRQALGLQQSPPNRVLVGIALALTLLIMRPVWT 117

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              +   +P  N +IT   A     +P   FM   T +  L   + +A     N  I +N
Sbjct: 118 DIHDNAFKPYDNGEITLMQAFSVAEKPVRNFMLAQTHQSSLEQMLRIA-----NEPIDQN 172

Query: 165 -DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
            + I + +++P+F+ISEL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P  ISLPF
Sbjct: 173 IEDISFAVVLPAFVISELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPF 232

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K++ FVL+DGW++ V  L  SF
Sbjct: 233 KLVIFVLVDGWAMTVGTLSASF 254


>gi|330447937|ref|ZP_08311585.1| flagellar biosynthetic protein FliP [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328492128|dbj|GAA06082.1| flagellar biosynthetic protein FliP [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 254

 Score =  152 bits (384), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 83/201 (41%), Positives = 122/201 (60%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T LS  P  L+M T F R IIV SILR  +G+   PPN +++ +AL +T  +M P   
Sbjct: 57  LMTALSFIPAFLLMATSFTRIIIVLSILRQALGLQQSPPNRILVGIALSLTILIMRPVWS 116

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              +    P  N  IT   A     +P   FM   T +  L   M +A+    + D+   
Sbjct: 117 DVYDNAFVPYDNGDITLLQAFDTAEKPVRDFMLKQTHQSALEQMMRIANEP-LDQDV--- 172

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           + I + I++P+F++SEL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P  ISLPFK
Sbjct: 173 EDISFAIVLPAFVVSELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK 232

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           +I FVL DGW++ V +L  SF
Sbjct: 233 LIVFVLADGWTMTVGSLSASF 253


>gi|520562|gb|AAA67717.1| FLIP [Sinorhizobium meliloti]
          Length = 136

 Score =  152 bits (384), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 70/136 (51%), Positives = 104/136 (76%), Gaps = 1/136 (0%)

Query: 1   MIRYCFFALFLVT-PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           M+R+  F + ++    +  A+S   D++N P D S+++WI+RTFG+ T+LS+AP +LIMV
Sbjct: 1   MLRFATFIIAMMAMSGIAGAQSFPADILNTPVDGSVASWIIRTFGLLTVLSVAPGILIMV 60

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T FPRF+I F+ILR+GMG+ + P N++++SLALFMTFYVM+PT DR+   GI PL+ N+I
Sbjct: 61  TSFPRFVIAFAILRSGMGLATTPSNMIMVSLALFMTFYVMAPTFDRAWRDGIDPLLKNEI 120

Query: 120 TETTAIQRVAEPFWVF 135
           +ET A+QR++EPF  F
Sbjct: 121 SETDAMQRMSEPFREF 136


>gi|156976196|ref|YP_001447102.1| flagellar biosynthesis protein FliP [Vibrio harveyi ATCC BAA-1116]
 gi|156527790|gb|ABU72875.1| hypothetical protein VIBHAR_04967 [Vibrio harveyi ATCC BAA-1116]
          Length = 255

 Score =  152 bits (384), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 81/202 (40%), Positives = 124/202 (61%), Gaps = 6/202 (2%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T LS  P  ++M T F R I+V +ILR  +G+   PPN V++ +AL +T  +M P   
Sbjct: 58  LMTALSFLPAFILMATSFTRIIVVLAILRQALGLQQSPPNRVLVGIALALTLLIMRPVWT 117

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              +   +P  N +IT   A     +P   FM   T +  L   + +A     N  I +N
Sbjct: 118 DIHDNAFKPYDNGEITLMQAFSVAEKPVRNFMLAQTHQSSLEQMLRIA-----NEPIDQN 172

Query: 165 -DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
            + I + +++P+F+ISEL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P  ISLPF
Sbjct: 173 VEDISFAVVLPAFVISELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPF 232

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K++ FVL+DGW++ V  L  SF
Sbjct: 233 KLVVFVLVDGWAMTVGTLSASF 254


>gi|323493116|ref|ZP_08098247.1| flagellar biosynthesis protein FliP [Vibrio brasiliensis LMG 20546]
 gi|323312587|gb|EGA65720.1| flagellar biosynthesis protein FliP [Vibrio brasiliensis LMG 20546]
          Length = 252

 Score =  152 bits (383), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 79/201 (39%), Positives = 122/201 (60%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T LS  P  ++M T F R I+V +ILR  +G+   PPN V++ +AL ++  +M P   
Sbjct: 55  LMTALSFLPAFILMATSFTRIIVVLAILRQALGLQQSPPNRVLVGIALALSLLIMRPVWT 114

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
                  QP  N +IT   A     +P   FM   T++  L   + +A+        T  
Sbjct: 115 DIYHNAFQPYDNGEITLMQAFSVAEKPVRNFMLAQTQQTSLEQMLRIANEPLD----TSV 170

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           + I + +++P+F+ISEL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P  ISLPFK
Sbjct: 171 EDISFAVVLPAFVISELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK 230

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW++ V  L  SF
Sbjct: 231 LVVFVLVDGWAMTVGTLSASF 251


>gi|225619290|ref|YP_002720516.1| flagellar biosynthesis protein FliP [Brachyspira hyodysenteriae
           WA1]
 gi|225214109|gb|ACN82843.1| flagellar biosynthesis protein FliP [Brachyspira hyodysenteriae
           WA1]
          Length = 257

 Score =  152 bits (383), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 82/208 (39%), Positives = 132/208 (63%), Gaps = 7/208 (3%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + TILS++P ++IM T F R  IV S ++  + +   PP  +I+ L+LF+TF++M PTL 
Sbjct: 49  LLTILSLSPSIIIMTTSFIRVSIVLSFVQRALSLQETPPRALIMGLSLFLTFFIMMPTLT 108

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE----KDLSLFMDMAHSSHRNTD 160
           +     +QP +N  I       R  +P  +FM N+ R     K L LF+ ++++  R  +
Sbjct: 109 QVNNEALQPYLNGTIGVNELYSRGIQPIRMFMFNSLRGENGMKSLDLFLSISNTDIRLRE 168

Query: 161 ITKND---HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
           I   D    I   +++P+F+I+EL  +F++G  + +PF++ID++VA+I+MAMGM+MLPP 
Sbjct: 169 IQTVDDLNRIPTIVVVPAFIINELTIAFKMGIYLFIPFIVIDLVVASILMAMGMIMLPPI 228

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
            ISLP K+I FV +DGW LL+  +V+SF
Sbjct: 229 MISLPLKIILFVAVDGWKLLILQIVQSF 256


>gi|182412233|ref|YP_001817299.1| flagellar biosynthetic protein FliP [Opitutus terrae PB90-1]
 gi|177839447|gb|ACB73699.1| flagellar biosynthetic protein FliP [Opitutus terrae PB90-1]
          Length = 302

 Score =  151 bits (382), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 89/219 (40%), Positives = 144/219 (65%), Gaps = 8/219 (3%)

Query: 28  NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87
           N    +S++  IV    + T+LS+AP +++++T F R +IV   +RT +G  S P N ++
Sbjct: 91  NQQGQVSVAVQIVL---VMTLLSVAPSIVLLMTTFTRLVIVLGFVRTALGTPSAPSNQIV 147

Query: 88  ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147
           I LALF+TF++M P  DR  +  ++P ++ QIT T A+     P   FM   TR +D+  
Sbjct: 148 IGLALFLTFFLMGPVFDRVNQEALRPYLDGQITATQALDHATVPLKEFMLKQTRTRDIEY 207

Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
           F+ +          T    +  R++IP+F+ISEL+ +F++GFL+ LPFL+ID +VA+++M
Sbjct: 208 FLQLGGFGP-----TAVKDLPIRVVIPAFVISELQTAFQMGFLLFLPFLVIDFLVASVLM 262

Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           AMGMMM+PP +++LP K++ FVL+DGW L+V +LV+SF+
Sbjct: 263 AMGMMMMPPVTVALPLKLLLFVLVDGWHLVVRSLVQSFV 301


>gi|145297437|ref|YP_001140278.1| flagellar biosynthesis protein FliP [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850209|gb|ABO88530.1| lateral flagellar assembly protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 244

 Score =  151 bits (382), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 80/185 (43%), Positives = 116/185 (62%), Gaps = 4/185 (2%)

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R IIV +ILR  MG+   PPN V+I ++L +T  ++ P      +    P   N+I+
Sbjct: 60  SFTRIIIVLAILRQAMGLQQSPPNRVLIGISLILTIVIIRPVWTDMYQHAFIPYDQNEIS 119

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
            +  I R  +P   FM   TRE DL     M   S   T +TK D + + +L+P+F++SE
Sbjct: 120 LSEGIARAEKPLRHFMLAQTREPDLE---QMLRISGEPTSLTK-DEVPFGVLLPAFVLSE 175

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L  +F+IGF++ +PFL+ID++VA+++MAMGMMML P  ISLPFK++ FVL+DGWS+ V  
Sbjct: 176 LNTAFQIGFMLFIPFLVIDLVVASVLMAMGMMMLSPLIISLPFKLMVFVLVDGWSMTVGT 235

Query: 241 LVKSF 245
           L  SF
Sbjct: 236 LAASF 240


>gi|328948400|ref|YP_004365737.1| flagellar biosynthetic protein FliP [Treponema succinifaciens DSM
           2489]
 gi|328448724|gb|AEB14440.1| flagellar biosynthetic protein FliP [Treponema succinifaciens DSM
           2489]
          Length = 281

 Score =  151 bits (382), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 80/192 (41%), Positives = 120/192 (62%), Gaps = 6/192 (3%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP + I++TCF RF IV   ++  + +  VPP  V+  +A+FMT + M PT  +      
Sbjct: 88  APSIFILMTCFLRFSIVLDFIKRALSLQQVPPTAVLNGIAIFMTLFCMWPTFRQIYTDSF 147

Query: 112 QPLMNNQITETTAIQRVAEPFWVFM-RNNTREKD-LSLFMDMAHSSHRNTDITKNDHIEY 169
           QPL NN+IT T AI++   P  +FM R    +K+ +  FM MA              +  
Sbjct: 148 QPLSNNEITLTEAIEKAESPIRIFMFRQMGNDKNSIRTFMTMAGLGRP----ANASDVPT 203

Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
            +LIP++++ EL  +F+IG L+ +PF++IDM+VA+I+M+MGMMMLPP  IS+PFK++ FV
Sbjct: 204 YVLIPAYILHELTVAFKIGILLYIPFIVIDMVVASILMSMGMMMLPPVQISMPFKLMLFV 263

Query: 230 LIDGWSLLVENL 241
           L+DGW LL + L
Sbjct: 264 LVDGWHLLTQQL 275


>gi|160902840|ref|YP_001568421.1| flagellar biosynthesis protein FliP [Petrotoga mobilis SJ95]
 gi|160360484|gb|ABX32098.1| flagellar biosynthetic protein FliP [Petrotoga mobilis SJ95]
          Length = 249

 Score =  151 bits (382), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 82/204 (40%), Positives = 129/204 (63%), Gaps = 9/204 (4%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T+LS+AP  L++ T F R ++V S LR  MG    PPN V+++LALF+T  +M P  +  
Sbjct: 49  TVLSLAPGFLMLFTSFTRIVVVLSFLRQAMGTRQAPPNQVMLALALFLTIMIMFPVFNGV 108

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRN----NTREKDLSLFMDMAHSSHRNTDIT 162
            +  I P   N+I+   AIQ     F  FM +    +  E D+ +      SS  N +I 
Sbjct: 109 YQEAIIPYNQNEISYEEAIQISWLQFKDFMISEIVAHKNEDDIYML-----SSSMNVEID 163

Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
             +   ++IL+P+F ISEL  +F++  L+ LPF+I+DM+VA+I+++MGM+M+PP  ISLP
Sbjct: 164 NIEETPFQILVPAFAISELEIAFKMSILLYLPFIIVDMVVASILLSMGMIMIPPILISLP 223

Query: 223 FKVIFFVLIDGWSLLVENLVKSFI 246
           FK++ FV+++GW L++  LV+SF+
Sbjct: 224 FKIMIFVMVNGWDLIIGGLVRSFV 247


>gi|332669209|ref|YP_004452217.1| flagellar biosynthetic protein FliP [Cellulomonas fimi ATCC 484]
 gi|332338247|gb|AEE44830.1| flagellar biosynthetic protein FliP [Cellulomonas fimi ATCC 484]
          Length = 240

 Score =  151 bits (382), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 83/199 (41%), Positives = 132/199 (66%), Gaps = 4/199 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T+LS+AP L++M T F +  +V S  R  +G+  VPPN V+  LALF++ +VM+P +   
Sbjct: 42  TLLSVAPALILMTTSFTKIFVVLSFTRNALGLQGVPPNQVLAGLALFLSLFVMAPVVSDI 101

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
             +G+QP ++  +T + A+   + P   FM   TRE+DL+L    A   +  +     + 
Sbjct: 102 NSVGVQPYLDGSLTFSQAVDVGSGPLREFMLGQTREQDLALLTRAADQENPASP----ED 157

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
           + +  L+P+F++SELR +F +GF+I +PFL+ID++V+  +M+MGMMMLPP  ISLPFK++
Sbjct: 158 VPFATLVPAFLLSELRSAFIMGFVIFVPFLVIDLVVSASLMSMGMMMLPPVMISLPFKIL 217

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FVL+DGW L+V +LV S+
Sbjct: 218 LFVLVDGWGLVVTSLVGSY 236


>gi|312884811|ref|ZP_07744503.1| flagellar biosynthesis protein FliP [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367463|gb|EFP95023.1| flagellar biosynthesis protein FliP [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 251

 Score =  151 bits (382), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 80/201 (39%), Positives = 121/201 (60%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T LS  P  ++M T F R I+V +ILR  +G+   PPN V++ +AL +T  +M P   
Sbjct: 54  LMTALSFLPAFILMATSFTRIIVVLAILRQALGLQQSPPNRVLVGIALALTLLIMRPVWS 113

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              +    P     IT + A     +P   FM   T++  L   M +A+        T  
Sbjct: 114 DIHQNAFLPYEAGTITLSQAFSIAEKPVRQFMLRQTQQNSLEQMMRIANEPMD----TSL 169

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D I + +++P+F+ISEL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P  ISLPFK
Sbjct: 170 DDISFAVILPAFVISELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFK 229

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW++ V  L  SF
Sbjct: 230 LVVFVLVDGWAMTVGTLSASF 250


>gi|260768789|ref|ZP_05877723.1| flagellar biosynthesis protein FliP [Vibrio furnissii CIP 102972]
 gi|260616819|gb|EEX42004.1| flagellar biosynthesis protein FliP [Vibrio furnissii CIP 102972]
 gi|315180492|gb|ADT87406.1| flagellar biosynthesis protein P [Vibrio furnissii NCTC 11218]
          Length = 249

 Score =  151 bits (382), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 86/199 (43%), Positives = 126/199 (63%), Gaps = 4/199 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T+LS  P  +IM TCF R IIV SILR  +G+   PPN V++ LAL  T  +M P     
Sbjct: 51  TMLSFVPAFIIMCTCFTRIIIVLSILRQALGLQQSPPNQVLVGLALVFTLLIMRPVWTEI 110

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
                QP M  +IT + AI   A+P   +M   T+ + L     +A  S    D    D 
Sbjct: 111 YADAYQPYMQEKITLSEAISTGAKPLHHYMLAQTQVQTLEQVTKIAGESLAEND----DD 166

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
           I + IL+P++++SEL+ +F+IGF++ LPFL+ID++VA+++M+MGMMML P  +SLPFK++
Sbjct: 167 IPFLILLPAYVLSELKIAFQIGFMVFLPFLVIDLVVASVLMSMGMMMLSPLIVSLPFKLL 226

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FV++DGW +LV +L +SF
Sbjct: 227 VFVVVDGWGMLVSSLSQSF 245


>gi|148269377|ref|YP_001243837.1| flagellar biosynthesis protein FliP [Thermotoga petrophila RKU-1]
 gi|170288035|ref|YP_001738273.1| flagellar biosynthetic protein FliP [Thermotoga sp. RQ2]
 gi|281411926|ref|YP_003346005.1| flagellar biosynthetic protein FliP [Thermotoga naphthophila
           RKU-10]
 gi|147734921|gb|ABQ46261.1| flagellar biosynthetic protein FliP [Thermotoga petrophila RKU-1]
 gi|170175538|gb|ACB08590.1| flagellar biosynthetic protein FliP [Thermotoga sp. RQ2]
 gi|281373029|gb|ADA66591.1| flagellar biosynthetic protein FliP [Thermotoga naphthophila
           RKU-10]
          Length = 249

 Score =  151 bits (382), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 84/205 (40%), Positives = 123/205 (60%), Gaps = 25/205 (12%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +L++ T F R I+VFS+ R  +G    PPN V+I LALF+TF +M P  +      I 
Sbjct: 56  PSILVLFTSFTRIIVVFSLFRNALGTRQTPPNQVMIGLALFLTFLIMQPVWNDIYNNAIT 115

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD----ITKNDHIE 168
           P +N +I      QRV          NTR ++   FM     +H N D    + KN  IE
Sbjct: 116 PYLNKEIGYQEMFQRV----------NTRIRE---FMINELKNHHNEDNVFMLAKNSGIE 162

Query: 169 --------YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
                     +LIP+F++ EL  +F++G ++ +PF++IDMIVA+I++AMGM+M+PP  +S
Sbjct: 163 IAKIEEAPNAVLIPAFVLGELEVAFKMGVVLYVPFIVIDMIVASILLAMGMIMIPPVFVS 222

Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245
           LPFK++ FV+ +GW LLVE L+KSF
Sbjct: 223 LPFKILIFVMANGWDLLVEGLIKSF 247


>gi|74101640|gb|AAZ99730.1| FliPL [Aeromonas hydrophila]
          Length = 244

 Score =  151 bits (381), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 80/185 (43%), Positives = 115/185 (62%), Gaps = 4/185 (2%)

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R IIV +ILR  MG+   PPN V+I ++L +T  +M P      +    P   N+I+
Sbjct: 60  SFTRIIIVLAILRQAMGLQQSPPNRVLIGISLILTIVIMRPVWTDMYQHAFIPYDQNEIS 119

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
            +  I R  +P   FM   TRE DL     M   S     +TK D + + +L+P+F++SE
Sbjct: 120 LSEGIARAEKPLRHFMLAQTREPDLE---QMLRISGEPISLTK-DEVPFGVLLPAFVLSE 175

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L  +F+IGF++ +PFL+ID++VA+++MAMGMMML P  ISLPFK++ FVL+DGWS+ V  
Sbjct: 176 LNTAFQIGFMLFIPFLVIDLVVASVLMAMGMMMLSPLIISLPFKLMVFVLVDGWSMTVGT 235

Query: 241 LVKSF 245
           L  SF
Sbjct: 236 LAASF 240


>gi|303240272|ref|ZP_07326791.1| flagellar biosynthetic protein FliP [Acetivibrio cellulolyticus
           CD2]
 gi|302592182|gb|EFL61911.1| flagellar biosynthetic protein FliP [Acetivibrio cellulolyticus
           CD2]
          Length = 269

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 85/197 (43%), Positives = 133/197 (67%), Gaps = 5/197 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +L+M+T F R IIV S LR  +G   +PPN V+I LALF+T ++M+P +    E   
Sbjct: 75  APSILMMMTSFTRVIIVLSFLRNALGTQQMPPNQVLIGLALFLTLFIMNPVITEINETAY 134

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND--HIEY 169
           +P  N +IT+  A++R ++    FM   T +KDL+LF+ +   S   T I + +  ++  
Sbjct: 135 KPYSNKEITQQVALERSSKTIKTFMLKQTEKKDLALFVSL---SGTKTPIKEQEVPNLPL 191

Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
             +IP+F+ISEL  +F++GFLI LPFL+ID++V++ +M+MGMMML P  ISLPFK++ F+
Sbjct: 192 TTIIPAFLISELTTAFKMGFLIYLPFLVIDLVVSSTLMSMGMMMLSPVMISLPFKILLFI 251

Query: 230 LIDGWSLLVENLVKSFI 246
           ++ GW+LL + +V SF+
Sbjct: 252 MVGGWNLLSQMIVNSFV 268


>gi|285018170|ref|YP_003375881.1| flagellar biosynthetic protein flip [Xanthomonas albilineans GPE
           PC73]
 gi|283473388|emb|CBA15893.1| probable flagellar biosynthetic protein flip [Xanthomonas
           albilineans]
          Length = 271

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 88/206 (42%), Positives = 128/206 (62%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++T  + T +++ P +L+++T F R  IV  +LR  MG G  P N V++ LALF+T  VM
Sbjct: 67  LQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQAMGTGQTPSNQVLMGLALFLTALVM 126

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P  +++ + G+ P +N QI   TA     +P   FM    RE DL  F  MA     N 
Sbjct: 127 MPVWEKAWDHGMSPYLNGQIDFQTAWTLTTQPLRAFMLAQIRESDLMTFAGMAG----NG 182

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
             +  D I + +L+ SF+ SEL+ +FEIGFLI +PF+IID++VA+++M+MGMMM+ P  I
Sbjct: 183 TYSSPDAIPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLVVASVLMSMGMMMMSPMLI 242

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           S PFK++ FVL+DGW L V  L  SF
Sbjct: 243 SAPFKILLFVLVDGWVLTVGTLAASF 268


>gi|91791432|ref|YP_561083.1| flagellar biosynthesis protein FliP [Shewanella denitrificans
           OS217]
 gi|91713434|gb|ABE53360.1| flagellar biosynthetic protein FliP [Shewanella denitrificans
           OS217]
          Length = 229

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 80/200 (40%), Positives = 126/200 (63%), Gaps = 8/200 (4%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108
           L++ P+ +I +T F R IIV S++R  +G+   PPN V+I+L+LF+T + MS   ++   
Sbjct: 36  LTLIPVFVIAMTAFTRIIIVLSLVRQALGLQQTPPNSVLIALSLFLTIFAMSGVFEQINN 95

Query: 109 MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSS--HRNTDITKNDH 166
             + P  N  I  + A+    EP   FM + T E      +DMA       + D++    
Sbjct: 96  KALLPYANGSIELSAAVSNGIEPLKGFMLSQTDEVHFIRVLDMAKVPVPQSSADVSLTH- 154

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
                L+P+FM+SEL  +F++ FLI LPFL+ID++VA+ +MA+GM+M+PP ++SLP K++
Sbjct: 155 -----LVPAFMLSELTLAFKMAFLIFLPFLMIDLLVASCLMALGMIMVPPITVSLPLKIM 209

Query: 227 FFVLIDGWSLLVENLVKSFI 246
            FVLIDGWSL+  +LV+SF+
Sbjct: 210 VFVLIDGWSLITGSLVQSFM 229


>gi|220903656|ref|YP_002478968.1| flagellar biosynthesis protein FliP [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219867955|gb|ACL48290.1| flagellar biosynthetic protein FliP [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 225

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/203 (43%), Positives = 139/203 (68%), Gaps = 6/203 (2%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + TILS+AP +++ VT F R IIVFS LR  MG+  +PP  ++ SLA+FMT  +M P   
Sbjct: 27  LLTILSVAPAIMLTVTSFTRIIIVFSFLRQAMGVQQLPPTQILASLAIFMTVVIMFPVGR 86

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +  +  +QP +N +I    A+ +   P   FM  +TREKDLS+F  ++     N +  KN
Sbjct: 87  QINDDALQPYLNERIDYREALDKAQAPLRSFMFKHTREKDLSIFYSIS-----NMEAPKN 141

Query: 165 -DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
            + +   +L  +++ISEL+ +F IGFLI +PFL++DM+++++++AMGMMMLPP  +S+PF
Sbjct: 142 KEEVPTMLLAAAYVISELKTAFTIGFLIYIPFLVLDMVISSVLLAMGMMMLPPMMVSMPF 201

Query: 224 KVIFFVLIDGWSLLVENLVKSFI 246
           K++ FV++DGW+LLV +LV SF+
Sbjct: 202 KLLLFVMVDGWNLLVGSLVNSFL 224


>gi|218513456|ref|ZP_03510296.1| flagellar biosynthesis protein FliP [Rhizobium etli 8C-3]
          Length = 124

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/100 (70%), Positives = 87/100 (87%), Gaps = 2/100 (2%)

Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195
           M  NTR+KDL+LF+D+A    R  +I  +D I+YR+LIP+FMISE+RR FEIGFL++LPF
Sbjct: 1   MAANTRDKDLALFVDLAR--ERGQNIQTSDPIDYRVLIPAFMISEIRRGFEIGFLVVLPF 58

Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235
           L+ID+IVATI MAMGMMMLPPTSISLPFK++FFVLIDGW+
Sbjct: 59  LVIDLIVATITMAMGMMMLPPTSISLPFKILFFVLIDGWN 98


>gi|222100861|ref|YP_002535429.1| Flagellar biosynthesis protein FliP [Thermotoga neapolitana DSM
           4359]
 gi|221573251|gb|ACM24063.1| Flagellar biosynthesis protein FliP [Thermotoga neapolitana DSM
           4359]
          Length = 249

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 77/198 (38%), Positives = 124/198 (62%), Gaps = 9/198 (4%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +L++ T F R I+VFS+ R  +G    PPN V+I LALF+TF +M P  +      I
Sbjct: 55  APSILVLFTSFTRIIVVFSLFRNALGTRQTPPNQVMIGLALFLTFLIMQPVWNDIYNNAI 114

Query: 112 QPLMNNQITETTAIQRVAEPFWVFM----RNNTREKDLSLFMDMAHSSHRNTDITKNDHI 167
            P +  +I      QR+      FM    +N+  E ++ +      + + N +IT+ +  
Sbjct: 115 TPYLEREIGYQEMFQRINNRIREFMIKELKNHHNEDNVFML-----AQNANLEITRVEEA 169

Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227
              +LIP+F++ EL  +F++G ++ +PF++IDMIVA+I+++MGM+M+PP  +SLPFK++ 
Sbjct: 170 PNSVLIPAFVLGELEIAFKMGVVLYVPFIVIDMIVASILLSMGMIMIPPVFVSLPFKILI 229

Query: 228 FVLIDGWSLLVENLVKSF 245
           FV+ +GW LLVE L+KSF
Sbjct: 230 FVMANGWDLLVEGLIKSF 247


>gi|320184486|gb|EFW59290.1| Flagellar biosynthesis protein FliP [Shigella flexneri CDC 796-83]
 gi|332096919|gb|EGJ01908.1| flagellar biosynthetic protein FliP [Shigella boydii 3594-74]
          Length = 222

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 84/208 (40%), Positives = 130/208 (62%), Gaps = 9/208 (4%)

Query: 9   LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66
           L+LVTP L FA+  L  + + P      +W   V+T    T L+  P +L+M+T F R I
Sbjct: 12  LWLVTP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +I+   A++
Sbjct: 69  IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           + A+P   FM   TRE DL LF  +A++      +   + +  RIL P+++ SEL+ +F+
Sbjct: 129 KGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILRPAYVTSELKTAFQ 184

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMML 214
           IGF I +PFLIID+++A+++MA+GMMM+
Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMV 212


>gi|149178714|ref|ZP_01857297.1| flagellar biosynthetic protein fliP-putative transporter of
           flagellar protein [Planctomyces maris DSM 8797]
 gi|148842412|gb|EDL56792.1| flagellar biosynthetic protein fliP-putative transporter of
           flagellar protein [Planctomyces maris DSM 8797]
          Length = 330

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 83/207 (40%), Positives = 126/207 (60%), Gaps = 14/207 (6%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +LIM T F RF+IVF +LR  +G   +PPN V+ SL+LF+T  VM+P  +++ E GI
Sbjct: 119 APSILIMTTSFIRFVIVFGLLRQALGTQQLPPNQVLTSLSLFLTIMVMAPIWEKAYEEGI 178

Query: 112 QPLMNNQ----ITETTAIQRVAEPFWVFMRNN---TREKD-LSLFMDMAH------SSHR 157
            P  N      ++   A Q+   P   FM +    T   D + +F+D          +  
Sbjct: 179 VPYTNQTQQAPVSLEAAFQKTVAPLRKFMSDQIELTGNSDTVWMFLDYQQPLPGSPGAES 238

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
                  D +   +L+P++M+SE++ +F IGF + LPF++IDM++++I+++MGMMMLPP 
Sbjct: 239 YQPPRDYDEVPLTVLLPAYMLSEVKTAFLIGFQLYLPFIVIDMVISSILISMGMMMLPPV 298

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKS 244
            ISLPFK++ FVLIDGW L V  L++S
Sbjct: 299 LISLPFKILLFVLIDGWLLTVGMLLES 325


>gi|212637763|ref|YP_002314288.1| flagellar biosynthesis protein FliP [Shewanella piezotolerans WP3]
 gi|212559247|gb|ACJ31701.1| Flagellar transport protein FliP [Shewanella piezotolerans WP3]
          Length = 242

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/202 (43%), Positives = 127/202 (62%), Gaps = 4/202 (1%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            + T+LS  P LL+M+T F R I+V +ILR  +G+   PPN V+I +AL MT ++M P  
Sbjct: 44  ALMTVLSFLPALLMMLTSFTRIIVVLAILRQALGLQQSPPNKVLIGIALVMTIFIMRPVG 103

Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163
               +    P    QI  T A+ +   P   FM   TRE DL   + +A      T    
Sbjct: 104 QAIYDEAFLPYDLGQIELTEAVVKAEVPLRKFMLAQTRETDLEQMLKIADEPTTLT---- 159

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
            D I + +L+P+F++SEL+ +F+IGFL+ LPFL+ID++VA+++M+MGMMML P  ISLPF
Sbjct: 160 ADEIPFFVLMPAFVLSELKTAFQIGFLLFLPFLVIDLVVASVLMSMGMMMLSPLIISLPF 219

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K++ FVL+DGWS+ V  LV S+
Sbjct: 220 KLMVFVLVDGWSMTVSTLVASY 241


>gi|149189860|ref|ZP_01868140.1| flagellar biosynthesis protein P [Vibrio shilonii AK1]
 gi|148836346|gb|EDL53303.1| flagellar biosynthesis protein P [Vibrio shilonii AK1]
          Length = 261

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 80/201 (39%), Positives = 121/201 (60%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T LS  P  ++M T F R I+V +ILR  +G+   PPN V+I +AL ++  +M P   
Sbjct: 62  LMTALSFLPAFILMATSFTRIIVVLAILRQALGLQQSPPNRVLIGIALSLSILIMRPVWS 121

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              E    P    +IT   A     +P   FM   T+   L     M   ++   D +K 
Sbjct: 122 DVYEHAFVPYDQGEITLMQAFATAEKPVRNFMLAQTQRNSLE---QMLRIANEPVD-SKV 177

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           + I + I++P+F+ISEL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P  +SLPFK
Sbjct: 178 EDISFAIVLPAFVISELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIVSLPFK 237

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW++ V  L  SF
Sbjct: 238 LVVFVLVDGWAMTVGTLSASF 258


>gi|83647782|ref|YP_436217.1| type III secretion system protein [Hahella chejuensis KCTC 2396]
 gi|83635825|gb|ABC31792.1| Type III secretory pathway, component EscR [Hahella chejuensis KCTC
           2396]
          Length = 215

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 78/206 (37%), Positives = 122/206 (59%), Gaps = 6/206 (2%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT- 102
           G   +LS+ P + IM T F +  +VFS+LR  +G+  +PPN+ +  LA+ ++ Y+M+P  
Sbjct: 11  GTLVLLSLIPFIAIMTTSFIKLAVVFSLLRNALGIQQIPPNMALYGLAIVLSIYIMAPVG 70

Query: 103 ---LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
               D   E G     +  + E        +P   F+  ++ EK+   F++ A +     
Sbjct: 71  YQIADTVKEKGFDLSQSESLKELA--NSAIDPMSEFLTKHSSEKERGFFLESAETLWPKE 128

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
              + D     +L+PSF ISEL+ +FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ P +I
Sbjct: 129 YAARLDTNSMLVLVPSFTISELKSAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTI 188

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW+ L   LV S+
Sbjct: 189 SLPFKLLLFVLLDGWTRLTHGLVLSY 214


>gi|15643461|ref|NP_228507.1| flagellar biosynthesis protein FliP [Thermotoga maritima MSB8]
 gi|4981221|gb|AAD35780.1|AE001741_13 flagellar biosynthesis protein FliP [Thermotoga maritima MSB8]
          Length = 249

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 83/205 (40%), Positives = 122/205 (59%), Gaps = 25/205 (12%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +L++ T F R I+VFS+ R  +G    PPN V+I LALF+TF +M P  +      I 
Sbjct: 56  PSILVLFTSFTRIIVVFSLFRNALGTRQTPPNQVMIGLALFLTFLIMQPVWNDIYNNAIT 115

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD----ITKNDHIE 168
           P +N +       QRV          NTR ++   FM     +H N D    + KN  IE
Sbjct: 116 PYLNKETGYQEMFQRV----------NTRIRE---FMINELKNHHNEDNVFMLAKNSGIE 162

Query: 169 --------YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
                     +LIP+F++ EL  +F++G ++ +PF++IDMIVA+I++AMGM+M+PP  +S
Sbjct: 163 IAKIEEAPNAVLIPAFVLGELEVAFKMGVVLYVPFIVIDMIVASILLAMGMIMIPPVFVS 222

Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245
           LPFK++ FV+ +GW LLVE L+KSF
Sbjct: 223 LPFKILIFVMANGWDLLVEGLIKSF 247


>gi|108758905|ref|YP_633786.1| type III secretion system protein [Myxococcus xanthus DK 1622]
 gi|108462785|gb|ABF87970.1| type III secretion apparatus protein YscR/HrcR [Myxococcus xanthus
           DK 1622]
          Length = 218

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 125/206 (60%), Gaps = 4/206 (1%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
           G+  ++S+ P  ++M+T F +  +V S+ R+ MG    PP +V+  LA  +T ++M+P +
Sbjct: 12  GMLAVMSLLPFAVLMLTSFSKIAVVLSLARSAMGTQQAPPTIVLTGLAAVLTGHIMAPVM 71

Query: 104 DRSIEMG----IQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +R  + G     +    +     +A  RV+EP   F+  +   ++ + F+D+A       
Sbjct: 72  ERMYDAGQVAYAEVASGSGAEMLSAASRVSEPLRAFLIKHGSAEERARFVDLARELRPVE 131

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           ++      +  I+IP+F+I+EL+ +F+IGFL+ LPFL++DM++A +++A+GM  L P+ +
Sbjct: 132 EMDAVRETDLFIVIPAFVITELKEAFQIGFLVFLPFLVLDMVIANVLLALGMQTLSPSQV 191

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FV +DGWSLL   L+  +
Sbjct: 192 SLPFKILLFVAVDGWSLLARGLILGY 217


>gi|225569962|ref|ZP_03778987.1| hypothetical protein CLOHYLEM_06057 [Clostridium hylemonae DSM
           15053]
 gi|225161432|gb|EEG74051.1| hypothetical protein CLOHYLEM_06057 [Clostridium hylemonae DSM
           15053]
          Length = 220

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 137/222 (61%), Gaps = 7/222 (3%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIA---PILLIMVTCFPRFIIVFSILRTGMGMGSVPP 83
           MN  A ++I+   V T  I  ++++    P +++M+T F R II+ S  R  +G+   PP
Sbjct: 1   MNTGALVNINGGQVPTLEILVMMTVVMLLPSIVVMMTSFVRIIIILSFTRNAIGVQQTPP 60

Query: 84  NLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREK 143
           N+V++ +ALF+T ++M P +        +P  N +I +  A+ R   P   FM   T   
Sbjct: 61  NMVLVGIALFLTLFIMDPVIKDINTEAYEPYKNGEIAQEEALDRATVPMKKFMLKQTEVS 120

Query: 144 DLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVA 203
            L+L++DMA    +    T  + +  R++IPSFM SEL+R F  G L+ +PFL+ID+IV+
Sbjct: 121 TLNLYVDMAGIEEK----TAPEDLPMRVVIPSFMTSELKRGFMAGLLLFIPFLLIDIIVS 176

Query: 204 TIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           + +M+MGM+MLPP +I+LPFK++ FV ++GW LL  ++V+SF
Sbjct: 177 STLMSMGMIMLPPATIALPFKLLLFVTLNGWELLFSSIVQSF 218


>gi|115377840|ref|ZP_01465028.1| type III secretion apparatus protein, YscR/HrcR family [Stigmatella
           aurantiaca DW4/3-1]
 gi|310820307|ref|YP_003952665.1| type III secretion system inner membrane p family protein
           [Stigmatella aurantiaca DW4/3-1]
 gi|115365172|gb|EAU64219.1| type III secretion apparatus protein, YscR/HrcR family [Stigmatella
           aurantiaca DW4/3-1]
 gi|309393379|gb|ADO70838.1| Type III secretion system inner membrane P family protein
           [Stigmatella aurantiaca DW4/3-1]
          Length = 277

 Score =  149 bits (376), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 76/203 (37%), Positives = 128/203 (63%), Gaps = 9/203 (4%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP---TLDRSIEM 109
           P +L+MVT F +  +V SI+R+ +G   +PP  VI  LA+ +T Y+M+P    + ++ ++
Sbjct: 75  PFMLMMVTSFVKISVVLSIVRSALGTQQIPPTQVITGLAVILTVYIMAPVGQEMYKAAKV 134

Query: 110 GI----QPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163
            I      L++++   T   A  R  EP   F+    + KD +LF  +A    +  D   
Sbjct: 135 DIWAKGPSLLSSETVGTLLEAADRSKEPLRDFLVKKVKNKDRALFFHLAKKMRKAEDRKD 194

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
               ++ I+IP+F++SEL+ +F+IGFL+ +PF++IDM+VA I++A+GM ML PT+IS+PF
Sbjct: 195 IGDRDFMIIIPAFVVSELKEAFQIGFLLFVPFIVIDMVVANILLALGMHMLSPTTISMPF 254

Query: 224 KVIFFVLIDGWSLLVENLVKSFI 246
           K++ FVL+DGW L+ + LV  ++
Sbjct: 255 KLLLFVLVDGWYLIAKGLVVGYL 277


>gi|226225725|ref|YP_002759831.1| flagellar biosynthetic protein FliP [Gemmatimonas aurantiaca T-27]
 gi|226088916|dbj|BAH37361.1| flagellar biosynthetic protein FliP [Gemmatimonas aurantiaca T-27]
          Length = 255

 Score =  149 bits (375), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 78/185 (42%), Positives = 115/185 (62%), Gaps = 4/185 (2%)

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R +IV   L+  MG  S PP  ++  +AL +T +VM PTL       I P ++ QIT
Sbjct: 74  GFTRILIVLQFLKQAMGTQSAPPGALLAGMALLLTGFVMGPTLSEVNRTAITPWLDGQIT 133

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
           +   ++   +P   FM   TR+ D+  F+ ++     NT     D +   +L+ +F+ SE
Sbjct: 134 QVEMMKTGVQPLRTFMLKQTRQSDVETFVKLSRMPQPNT----VDDVPLHVLMSAFVASE 189

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           LR +F+IGF I LPF+IID +VA+++M+MGM MLPP  ISLPFK++ FVL+DGWSL + +
Sbjct: 190 LRTAFQIGFAIYLPFIIIDAVVASVLMSMGMFMLPPAMISLPFKLLLFVLVDGWSLTITS 249

Query: 241 LVKSF 245
           LV+SF
Sbjct: 250 LVQSF 254


>gi|167626138|ref|YP_001676432.1| flagellar biosynthesis protein FliP [Shewanella halifaxensis
           HAW-EB4]
 gi|167356160|gb|ABZ78773.1| flagellar biosynthetic protein FliP [Shewanella halifaxensis
           HAW-EB4]
          Length = 242

 Score =  148 bits (374), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 88/202 (43%), Positives = 126/202 (62%), Gaps = 4/202 (1%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            + T+LS  P LL+M+T F R I+V +ILR  +G+   PPN V+I +AL MT ++M P  
Sbjct: 44  ALMTVLSFLPALLMMLTSFTRIIVVLAILRQALGLQQSPPNKVLIGIALVMTIFIMRPVG 103

Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163
               +    P    QI    A+ R   P   FM   TRE DL   + +A      T    
Sbjct: 104 QEIYDDAFLPYDMGQIELPEAVARGEVPLRQFMLAQTRETDLEQMLKIADEPITLT---- 159

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
            D I + +L+P+F++SEL+ +F+IGFL+ LPFL+ID++VA+++M+MGMMML P  ISLPF
Sbjct: 160 ADEIPFFVLMPAFVLSELKTAFQIGFLLFLPFLVIDLVVASVLMSMGMMMLSPLIISLPF 219

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K++ FVL+DGWS+ V  LV S+
Sbjct: 220 KLMVFVLVDGWSMTVSTLVASY 241


>gi|157959919|ref|YP_001499953.1| flagellar biosynthesis protein FliP [Shewanella pealeana ATCC
           700345]
 gi|157844919|gb|ABV85418.1| flagellar biosynthetic protein FliP [Shewanella pealeana ATCC
           700345]
          Length = 242

 Score =  147 bits (372), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 85/202 (42%), Positives = 127/202 (62%), Gaps = 4/202 (1%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            + T+LS  P +L+M+T F R I+V  ILR  +G+   PPN V+I +AL MT ++M P  
Sbjct: 44  ALMTVLSFLPAMLMMLTSFTRIIVVLGILRQALGLQQSPPNKVLIGIALVMTIFIMRPVG 103

Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163
           +   E    P     I    A++R  +P   FM   TRE DL   + +A      T    
Sbjct: 104 EEIYEKAFLPYDQGIIELPEAVERGEKPLRQFMLAQTRETDLEQMLKIADEPTTLT---- 159

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
            + I + +L+P++++SEL+ +F+IGFL+ LPFL+ID++VA+++M+MGMMML P  ISLPF
Sbjct: 160 AEEIPFFVLMPAYVLSELKTAFQIGFLLFLPFLVIDLVVASVLMSMGMMMLSPLIISLPF 219

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K++ FVL+DGWS+ V  LV S+
Sbjct: 220 KLMVFVLVDGWSMTVSTLVASY 241


>gi|22124444|ref|NP_667867.1| type III secretion system protein [Yersinia pestis KIM 10]
 gi|108810002|ref|YP_653918.1| type III secretion system protein [Yersinia pestis Antiqua]
 gi|108813557|ref|YP_649324.1| type III secretion system protein [Yersinia pestis Nepal516]
 gi|145600947|ref|YP_001165023.1| type III secretion system protein [Yersinia pestis Pestoides F]
 gi|161511452|ref|NP_991819.2| type III secretion system protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|161760592|ref|YP_068873.2| type III secretion system protein [Yersinia pseudotuberculosis IP
           32953]
 gi|165936558|ref|ZP_02225126.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|170026115|ref|YP_001722620.1| type III secretion system protein [Yersinia pseudotuberculosis
           YPIII]
 gi|186893685|ref|YP_001870797.1| type III secretion system protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|21957231|gb|AAM84118.1|AE013654_7 putative type III secretion system component [Yersinia pestis KIM
           10]
 gi|108777205|gb|ABG19724.1| type III secretion apparatus protein [Yersinia pestis Nepal516]
 gi|108781915|gb|ABG15973.1| putative type III secretion apparatus protein [Yersinia pestis
           Antiqua]
 gi|145212643|gb|ABP42050.1| type III secretion apparatus protein [Yersinia pestis Pestoides F]
 gi|165915674|gb|EDR34283.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|169752649|gb|ACA70167.1| Yop virulence translocation R [Yersinia pseudotuberculosis YPIII]
 gi|186696711|gb|ACC87340.1| Yop virulence translocation R [Yersinia pseudotuberculosis PB1/+]
          Length = 236

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 81/203 (39%), Positives = 130/203 (64%), Gaps = 6/203 (2%)

Query: 48  ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRS 106
           +LS+ P+L++M T F +  +VFS+LR  +G+  VPPN+ I  LAL +T ++M+P  LD  
Sbjct: 36  MLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQ 95

Query: 107 IEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSS--HRNTDITK 163
             +  + L N+       I Q    P+  F++ NT  + ++ F D+  +    R  D  K
Sbjct: 96  ARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVK 155

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
            D +   IL+P+F +S+L  +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P ++SLPF
Sbjct: 156 PDSL--LILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPF 213

Query: 224 KVIFFVLIDGWSLLVENLVKSFI 246
           K++ FVL+DGWSL++  LV S++
Sbjct: 214 KLLVFVLVDGWSLVLGQLVGSYL 236


>gi|157363490|ref|YP_001470257.1| flagellar biosynthesis protein FliP [Thermotoga lettingae TMO]
 gi|157314094|gb|ABV33193.1| flagellar biosynthetic protein FliP [Thermotoga lettingae TMO]
          Length = 250

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 82/203 (40%), Positives = 126/203 (62%), Gaps = 5/203 (2%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           I T+L++AP +LI+ T F R I+VFS LR  +G    PP+ V+I LALF+TF++M P  +
Sbjct: 49  IITVLALAPSILILFTSFTRIIVVFSFLRNALGTRQTPPSQVLIGLALFLTFFIMQPVWN 108

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN--TREKDLSLFMDMAHSSHRNTDIT 162
                 + P M  +I       R+      FM         + ++F+ +A S  +  D  
Sbjct: 109 DIYNDALTPYMEKEIGYEELFSRMIGRVRQFMLKELVDHHNEDNVFL-LASSVGKKFD-- 165

Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
           K +     ILIP+F++ EL   F++G L+ +PF++IDMIV++I++AMGM+M+PP  ISLP
Sbjct: 166 KIEDAPNSILIPAFVLGELEIGFKMGVLLYIPFIVIDMIVSSILLAMGMIMIPPVLISLP 225

Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245
           FKV+ F++++GW LLV  L+KSF
Sbjct: 226 FKVLLFIVVNGWDLLVSGLIKSF 248


>gi|150260681|ref|ZP_01917409.1| putative type III secretion apparatus protein [Yersinia pestis
           CA88-4125]
 gi|153950632|ref|YP_001402768.1| type III secretion system protein [Yersinia pseudotuberculosis IP
           31758]
 gi|162418478|ref|YP_001608228.1| type III secretion system protein [Yersinia pestis Angola]
 gi|165926714|ref|ZP_02222546.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|166010511|ref|ZP_02231409.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166213909|ref|ZP_02239944.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167402211|ref|ZP_02307684.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167419036|ref|ZP_02310789.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167426164|ref|ZP_02317917.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|218927477|ref|YP_002345352.1| type III secretion system protein [Yersinia pestis CO92]
 gi|229836525|ref|ZP_04456691.1| putative type III secretion apparatus protein [Yersinia pestis
           Pestoides A]
 gi|229840133|ref|ZP_04460292.1| putative type III secretion apparatus protein [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229842214|ref|ZP_04462369.1| putative type III secretion apparatus protein [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229904047|ref|ZP_04519160.1| putative type III secretion apparatus protein [Yersinia pestis
           Nepal516]
 gi|294502343|ref|YP_003566405.1| putative type III secretion apparatus protein [Yersinia pestis
           Z176003]
 gi|51587964|emb|CAH19567.1| putative type III secretion apparatus protein, YscR/EscR [Yersinia
           pseudotuberculosis IP 32953]
 gi|115346088|emb|CAL18956.1| putative type III secretion apparatus protein [Yersinia pestis
           CO92]
 gi|149290089|gb|EDM40166.1| putative type III secretion apparatus protein [Yersinia pestis
           CA88-4125]
 gi|152962127|gb|ABS49588.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
           pseudotuberculosis IP 31758]
 gi|162351293|gb|ABX85241.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
           pestis Angola]
 gi|165921337|gb|EDR38561.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165990601|gb|EDR42902.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166204884|gb|EDR49364.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166963030|gb|EDR59051.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167048392|gb|EDR59800.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167054875|gb|EDR64677.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|229679817|gb|EEO75920.1| putative type III secretion apparatus protein [Yersinia pestis
           Nepal516]
 gi|229690524|gb|EEO82578.1| putative type III secretion apparatus protein [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229696499|gb|EEO86546.1| putative type III secretion apparatus protein [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229706209|gb|EEO92217.1| putative type III secretion apparatus protein [Yersinia pestis
           Pestoides A]
 gi|262360423|gb|ACY57144.1| putative type III secretion apparatus protein [Yersinia pestis
           D106004]
 gi|262364373|gb|ACY60930.1| putative type III secretion apparatus protein [Yersinia pestis
           D182038]
 gi|294352802|gb|ADE63143.1| putative type III secretion apparatus protein [Yersinia pestis
           Z176003]
          Length = 216

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 81/203 (39%), Positives = 130/203 (64%), Gaps = 6/203 (2%)

Query: 48  ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRS 106
           +LS+ P+L++M T F +  +VFS+LR  +G+  VPPN+ I  LAL +T ++M+P  LD  
Sbjct: 16  MLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQ 75

Query: 107 IEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSS--HRNTDITK 163
             +  + L N+       I Q    P+  F++ NT  + ++ F D+  +    R  D  K
Sbjct: 76  ARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVK 135

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
            D +   IL+P+F +S+L  +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P ++SLPF
Sbjct: 136 PDSL--LILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPF 193

Query: 224 KVIFFVLIDGWSLLVENLVKSFI 246
           K++ FVL+DGWSL++  LV S++
Sbjct: 194 KLLVFVLVDGWSLVLGQLVGSYL 216


>gi|261884803|ref|ZP_06008842.1| flagellar biosynthesis protein FliP [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 190

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 80/165 (48%), Positives = 106/165 (64%), Gaps = 4/165 (2%)

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R IIVFS LR  MG   +PP  V+ISLAL +TF++M P   +S   GI+P +  +I
Sbjct: 30  TSFLRLIIVFSFLRQAMGTQQMPPTNVLISLALILTFFIMEPVAKQSYNEGIKPYLEEKI 89

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
               A    A+PF  FM  NTREKDL+LF  +    + NT     D I + I  P+F+IS
Sbjct: 90  GYQDAFALGAKPFKEFMVRNTREKDLALFYRIRALPNPNT----VDDIPFTIAAPAFIIS 145

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           EL+ +FEIGF++ LP L+IDM+V +++M+MGMM LPP  ISL FK
Sbjct: 146 ELKTAFEIGFMLYLPVLVIDMVVNSVLMSMGMMTLPPEMISLTFK 190


>gi|78358622|ref|YP_390071.1| flagellar biosynthesis protein FliP [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78221027|gb|ABB40376.1| flagellar biosynthetic protein FliP [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 237

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 91/203 (44%), Positives = 133/203 (65%), Gaps = 6/203 (2%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T+LS+AP +++ VT F R IIVF  +R  MG+ ++PPN V+ SLA+FMT  +M P   
Sbjct: 39  LLTVLSLAPAIMLTVTSFTRIIIVFHFVRQAMGLPTLPPNQVLASLAIFMTVVIMMPVGK 98

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH-RNTDITK 163
              +  +QP ++ +I    A+    EP   FM  +TREKDLS+F  +      RN     
Sbjct: 99  EINDRALQPYLDERIGFREALTVAQEPLREFMFKHTREKDLSVFYGITGMERPRN----- 153

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
            D +   +L   ++ISEL+  F IGFLI +PFL++DM+VA+I++AMGMMMLPP  +S+PF
Sbjct: 154 KDDVPTVMLAAGYVISELKTGFTIGFLIYIPFLVLDMVVASILLAMGMMMLPPMMVSMPF 213

Query: 224 KVIFFVLIDGWSLLVENLVKSFI 246
           K++ FV++DGWSLL  +LV SF+
Sbjct: 214 KILLFVMVDGWSLLTTSLVNSFM 236


>gi|45435136|gb|AAS60696.1| putative type III secretion apparatus protein [Yersinia pestis
           biovar Microtus str. 91001]
          Length = 201

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 81/203 (39%), Positives = 130/203 (64%), Gaps = 6/203 (2%)

Query: 48  ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRS 106
           +LS+ P+L++M T F +  +VFS+LR  +G+  VPPN+ I  LAL +T ++M+P  LD  
Sbjct: 1   MLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQ 60

Query: 107 IEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSS--HRNTDITK 163
             +  + L N+       I Q    P+  F++ NT  + ++ F D+  +    R  D  K
Sbjct: 61  ARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVK 120

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
            D +   IL+P+F +S+L  +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P ++SLPF
Sbjct: 121 PDSL--LILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPF 178

Query: 224 KVIFFVLIDGWSLLVENLVKSFI 246
           K++ FVL+DGWSL++  LV S++
Sbjct: 179 KLLVFVLVDGWSLVLGQLVGSYL 201


>gi|308050042|ref|YP_003913608.1| flagellar biosynthetic protein FliP [Ferrimonas balearica DSM 9799]
 gi|307632232|gb|ADN76534.1| flagellar biosynthetic protein FliP [Ferrimonas balearica DSM 9799]
          Length = 243

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/202 (40%), Positives = 126/202 (62%), Gaps = 4/202 (1%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            + T LS  P +L+M+T F R I+V ++LR  +G+   PPN ++I +AL +T ++M P  
Sbjct: 43  ALMTALSFLPAMLLMMTSFTRIIVVLAVLRQALGLQQSPPNKLLIGIALVLTLFIMRPVW 102

Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163
               E    P  N ++T   A+     P   FM   TRE DL   + +A  S +      
Sbjct: 103 TEIHEQAFLPYDNGELTLKQAVAVAEVPLRTFMLGQTRETDLEQMLKIAGESTQ----LS 158

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
            + + + +L+P+F++SEL+ +F+IGFL+ +PFL+ID++VA+++M+MGMMML P  ISLPF
Sbjct: 159 AEEVPFSVLMPAFVLSELKTAFQIGFLLFIPFLVIDLVVASVLMSMGMMMLSPLIISLPF 218

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K++ FVL+DGWS+ V  L  SF
Sbjct: 219 KLMVFVLVDGWSMTVGTLAASF 240


>gi|188991607|ref|YP_001903617.1| flagellar biosynthesis protein FliP [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167733367|emb|CAP51568.1| Flagellar biosynthetic protein fliP [Xanthomonas campestris pv.
           campestris]
          Length = 280

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 86/206 (41%), Positives = 127/206 (61%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++T  + T +++ P +L+++T F R  IV  +LR  +G G  P N V++ LA+F+T  VM
Sbjct: 76  LQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQTPSNQVLLGLAMFLTALVM 135

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P   +    G+QP +NNQI  +TA     +P   FM    RE DL  F  MA       
Sbjct: 136 MPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIRETDLMTFAGMAGDGKY-- 193

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++VA+++M+MGMMML P  I
Sbjct: 194 --AGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLVVASVLMSMGMMMLSPMLI 251

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           S PFK++ F+L+DGW L+V  L  SF
Sbjct: 252 SAPFKILLFILVDGWVLVVGTLAASF 277


>gi|325928699|ref|ZP_08189871.1| flagellar biosynthetic protein FliP [Xanthomonas perforans 91-118]
 gi|325540931|gb|EGD12501.1| flagellar biosynthetic protein FliP [Xanthomonas perforans 91-118]
          Length = 270

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 86/206 (41%), Positives = 127/206 (61%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++T  + T +++ P +L+++T F R  IV  +LR  +G G  P N V++ LA+F+T  VM
Sbjct: 66  LQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQTPSNQVLLGLAMFLTALVM 125

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P   +    G+QP +NNQI  +TA     +P   FM    RE DL  F  MA       
Sbjct: 126 MPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIRETDLMTFAGMAGDGKY-- 183

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++VA+++M+MGMMML P  I
Sbjct: 184 --AGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLVVASVLMSMGMMMLSPMLI 241

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           S PFK++ F+L+DGW L+V  L  SF
Sbjct: 242 SAPFKILLFILVDGWVLVVGTLAASF 267


>gi|21231364|ref|NP_637281.1| flagellar biosynthesis protein FliP [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66768583|ref|YP_243345.1| flagellar biosynthesis protein FliP [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21113027|gb|AAM41205.1| flagellar biosynthetic protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573915|gb|AAY49325.1| flagellar biosynthetic protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 280

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 86/206 (41%), Positives = 127/206 (61%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++T  + T +++ P +L+++T F R  IV  +LR  +G G  P N V++ LA+F+T  VM
Sbjct: 76  LQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQTPSNQVLLGLAMFLTALVM 135

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P   +    G+QP +NNQI  +TA     +P   FM    RE DL  F  MA       
Sbjct: 136 MPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIRETDLMTFAGMAGDGKY-- 193

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++VA+++M+MGMMML P  I
Sbjct: 194 --AGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLVVASVLMSMGMMMLSPMLI 251

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           S PFK++ F+L+DGW L+V  L  SF
Sbjct: 252 SAPFKILLFILVDGWVLVVGTLAASF 277


>gi|21242688|ref|NP_642270.1| flagellar biosynthesis protein FliP [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21108161|gb|AAM36806.1| flagellar biosynthetic protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 262

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 86/206 (41%), Positives = 127/206 (61%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++T  + T +++ P +L+++T F R  IV  +LR  +G G  P N V++ LA+F+T  VM
Sbjct: 58  LQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQTPSNQVLLGLAMFLTALVM 117

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P   +    G+QP +NNQI  +TA     +P   FM    RE DL  F  MA       
Sbjct: 118 MPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIRETDLMTFAGMAGDGKY-- 175

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++VA+++M+MGMMML P  I
Sbjct: 176 --AGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLVVASVLMSMGMMMLSPMLI 233

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           S PFK++ F+L+DGW L+V  L  SF
Sbjct: 234 SAPFKILLFILVDGWVLVVGTLAASF 259


>gi|319795616|ref|YP_004157256.1| yop virulence translocation r [Variovorax paradoxus EPS]
 gi|315598079|gb|ADU39145.1| Yop virulence translocation R [Variovorax paradoxus EPS]
          Length = 219

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 75/205 (36%), Positives = 125/205 (60%), Gaps = 12/205 (5%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108
           L +     +MVT + + IIVF +LRT +G+   PPN+V+  +A+ ++ Y+M+P     +E
Sbjct: 18  LGVTSFAALMVTSYTKLIIVFGLLRTALGLQQTPPNMVLNGIAIILSVYIMAPV---GME 74

Query: 109 MGIQPLMNNQITET--------TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD 160
           +G   L N  + +           I     P   F++ +TRE++   F+  A S      
Sbjct: 75  VG-DALRNRTLGQKGEGLNDIVAVIDAAKVPLKEFLQKHTRERERQFFLKSASSMWPQAR 133

Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
             +    ++ +L+PSF +SEL R+F+IGF+I L F+++D+IVAT+++A+GM M+ PT+IS
Sbjct: 134 AAQLQPDDFMVLVPSFTLSELTRAFQIGFVIYLVFVVVDLIVATVLLALGMSMIAPTTIS 193

Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245
           LPFK++ FV++DGW+ LV  LV S+
Sbjct: 194 LPFKLLLFVMLDGWTRLVHGLVLSY 218


>gi|294664068|ref|ZP_06729470.1| flagellar biosynthesis pathway component FliP [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|292606171|gb|EFF49420.1| flagellar biosynthesis pathway component FliP [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
          Length = 281

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 86/206 (41%), Positives = 127/206 (61%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++T  + T +++ P +L+++T F R  IV  +LR  +G G  P N V++ LA+F+T  VM
Sbjct: 77  LQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQTPSNQVLLGLAMFLTALVM 136

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P   +    G+QP +NNQI  +TA     +P   FM    RE DL  F  MA       
Sbjct: 137 MPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIRETDLMTFAGMAGDGKY-- 194

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++VA+++M+MGMMML P  I
Sbjct: 195 --AGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLVVASVLMSMGMMMLSPMLI 252

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           S PFK++ F+L+DGW L+V  L  SF
Sbjct: 253 SAPFKILLFILVDGWVLVVGTLAASF 278


>gi|78047544|ref|YP_363719.1| flagellar biosynthesis protein FliP [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78035974|emb|CAJ23665.1| flagellar biosynthesis pathway component FliP [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 281

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 86/206 (41%), Positives = 127/206 (61%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++T  + T +++ P +L+++T F R  IV  +LR  +G G  P N V++ LA+F+T  VM
Sbjct: 77  LQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQTPSNQVLLGLAMFLTALVM 136

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P   +    G+QP +NNQI  +TA     +P   FM    RE DL  F  MA       
Sbjct: 137 MPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIRETDLMTFAGMAGDGKY-- 194

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++VA+++M+MGMMML P  I
Sbjct: 195 --AGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLVVASVLMSMGMMMLSPMLI 252

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           S PFK++ F+L+DGW L+V  L  SF
Sbjct: 253 SAPFKILLFILVDGWVLVVGTLAASF 278


>gi|325917745|ref|ZP_08179932.1| flagellar biosynthetic protein FliP [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536044|gb|EGD07853.1| flagellar biosynthetic protein FliP [Xanthomonas vesicatoria ATCC
           35937]
          Length = 280

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 86/206 (41%), Positives = 127/206 (61%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++T  + T +++ P +L+++T F R  IV  +LR  +G G  P N V++ LA+F+T  VM
Sbjct: 76  LQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQTPSNQVLLGLAMFLTALVM 135

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P   +    G+QP +NNQI  +TA     +P   FM    RE DL  F  MA       
Sbjct: 136 MPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIRETDLMTFAGMAGDGKY-- 193

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++VA+++M+MGMMML P  I
Sbjct: 194 --AGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLVVASVLMSMGMMMLSPMLI 251

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           S PFK++ F+L+DGW L+V  L  SF
Sbjct: 252 SAPFKILLFILVDGWVLVVGTLAASF 277


>gi|9663066|emb|CAC01098.1| FliP flagellar protein [Helicobacter pylori]
 gi|9663068|emb|CAC01099.1| FliP flagellar protein [Helicobacter pylori]
 gi|9663074|emb|CAC01102.1| FliP flagellar protein [Helicobacter pylori]
 gi|9663076|emb|CAC01103.1| FliP flagellar protein [Helicobacter pylori]
 gi|9663084|emb|CAC01105.1| FliP flagellar protein [Helicobacter pylori]
 gi|9663086|emb|CAC01106.1| FliP flagellar protein [Helicobacter pylori]
 gi|9663088|emb|CAC01107.1| FliP flagellar protein [Helicobacter pylori]
 gi|9663092|emb|CAC01109.1| FliP flagellar protein [Helicobacter pylori]
 gi|9663094|emb|CAC01110.1| FliP flagellar protein [Helicobacter pylori]
 gi|9663096|emb|CAC01111.1| FliP flagellar protein [Helicobacter pylori]
 gi|9663104|emb|CAC01115.1| FliP flagellar protein [Helicobacter pylori]
 gi|9663106|emb|CAC01116.1| FliP flagellar protein [Helicobacter pylori]
          Length = 160

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 69/156 (44%), Positives = 107/156 (68%), Gaps = 4/156 (2%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            + T+L +AP L++++T F R I+VFS LRT +G    PP  +++SL+L +TF++M P+L
Sbjct: 9   ALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL 68

Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163
            ++ + GI+P M+ +I+ T A ++ A PF  FM  NTREKDL+LF  + +  +  T    
Sbjct: 69  KKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTP--- 125

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
            D +   +LIP+FMISEL+ +F+IGFL+ LPFL+ID
Sbjct: 126 -DEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVID 160


>gi|94987081|ref|YP_595014.1| flagellar biosynthesis protein FliP [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731330|emb|CAJ54693.1| Flagellar biosynthesis pathway, component FliP [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 262

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 87/200 (43%), Positives = 134/200 (67%), Gaps = 4/200 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T+LS+AP +++ VT F R IIVF  LR  MG+  +PP  ++ SLA+FMT  +M P   + 
Sbjct: 66  TVLSLAPAIMLTVTSFTRIIIVFHFLRQAMGIQQIPPTQILASLAIFMTVIIMFPVGKQI 125

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
            +  +QP ++ ++  + A+ R   P   F+  +TREKDLS+F  +A    R       D 
Sbjct: 126 NDTALQPYLDERLGFSEALTRAQAPLRTFLFKHTREKDLSIFYSIA----RMEQPKNKDD 181

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
           +   +L  +++ISEL+  F IGFLI +PFLI+DM+V+++++AMGMMMLPP  +S+PFK++
Sbjct: 182 VPTILLSAAYVISELKTGFIIGFLIYIPFLIVDMVVSSVLLAMGMMMLPPMMVSMPFKLL 241

Query: 227 FFVLIDGWSLLVENLVKSFI 246
            FV+IDGW+LL+ +LV SF+
Sbjct: 242 LFVMIDGWNLLIGSLVNSFL 261


>gi|87307408|ref|ZP_01089553.1| flagellar biosynthetic protein fliP-putative transporter of
           flagellar proteins [Blastopirellula marina DSM 3645]
 gi|87290148|gb|EAQ82037.1| flagellar biosynthetic protein fliP-putative transporter of
           flagellar proteins [Blastopirellula marina DSM 3645]
          Length = 317

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 83/228 (36%), Positives = 127/228 (55%), Gaps = 27/228 (11%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T+LS+AP +L+M T F R IIV  +LR  +G   +PP+ V+ ++ALFMT  +M PT  
Sbjct: 86  LLTVLSLAPAILLMTTGFIRIIIVLGLLRQALGTQQLPPSQVVTAIALFMTILLMYPTWQ 145

Query: 105 RSIEMGIQPLMNNQITETTAIQ---------------------RVAEPFWVFMRNN---- 139
              E  + P    ++   T  Q                     +  +P   FM       
Sbjct: 146 EVYEESVGPYTREEVNPDTGQQYKLFAVEDPATGEMGPDEAWEKGTKPIRHFMSKQIDIA 205

Query: 140 TREKDLSLFMDMAHSSHRNT--DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197
               D+ +F +      ++   +    D +  + LIP+F++SEL+ +F IGF I LPFLI
Sbjct: 206 GNSDDVWMFFEFLPQGTKDKIGEPQSYDDVPLQALIPAFILSELKTAFLIGFQIYLPFLI 265

Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +D++VA+I ++MGMMMLPP  ISLPFK++ FVL+DGW+L+V  L++SF
Sbjct: 266 LDIVVASITISMGMMMLPPVMISLPFKLLLFVLVDGWTLVVGMLLQSF 313


>gi|120597289|ref|YP_961863.1| flagellar biosynthesis protein FliP [Shewanella sp. W3-18-1]
 gi|146294566|ref|YP_001184990.1| flagellar biosynthesis protein FliP [Shewanella putrefaciens CN-32]
 gi|120557382|gb|ABM23309.1| flagellar biosynthetic protein FliP [Shewanella sp. W3-18-1]
 gi|145566256|gb|ABP77191.1| flagellar biosynthetic protein FliP [Shewanella putrefaciens CN-32]
          Length = 244

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 83/202 (41%), Positives = 128/202 (63%), Gaps = 3/202 (1%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            + T +S  P++L+M+T F R IIV +ILR  +G+   PPN V++ +AL +T ++M P  
Sbjct: 45  ALMTAISFLPVMLMMLTSFTRIIIVLAILRQALGLQQSPPNRVLVGIALILTIFIMRPVG 104

Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163
           D+  +    P    +I    AI     P   FM   TRE DL   + +A+     T +  
Sbjct: 105 DKIYKEAYLPYDQGKIELMEAISIAKVPLTRFMLAQTRETDLEQMLKIANEP---THMKT 161

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
            + + + +L+P+F++SEL+ +F+IGFLI LPFL+ID++VA+++M+MGMMML P  ISLPF
Sbjct: 162 AEEVPFFVLMPAFVLSELKTAFQIGFLIFLPFLVIDLVVASVLMSMGMMMLSPLIISLPF 221

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K++ FVL+DGW++ V  L  SF
Sbjct: 222 KLMIFVLVDGWAMTVSTLTASF 243


>gi|221200568|ref|ZP_03573610.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia multivorans CGD2M]
 gi|221209245|ref|ZP_03582235.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia multivorans CGD2]
 gi|221170901|gb|EEE03358.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia multivorans CGD2]
 gi|221179909|gb|EEE12314.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia multivorans CGD2M]
          Length = 224

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 134/219 (61%), Gaps = 21/219 (9%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V    +   L IAP   +MVT + + ++V  +LR+ +G+  VPPNLV+  +AL ++ ++M
Sbjct: 8   VALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIM 67

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAE----------PFWVFMRNNTREKDLSLFM 149
           +P     + M I+  +  +  +T+     A+          P   F+ ++TR++D   F+
Sbjct: 68  AP-----VGMSIRDALQARHFDTSGQLSTADVGVLADAALPPIKDFLVSHTRQRDRDFFV 122

Query: 150 DMAHS---SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
             A S    +R  DI  +D +   +L+PSF ++EL ++F+IGF+I + F+++D++VA I+
Sbjct: 123 RTATSVWPKNRADDIKDDDLL---VLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANIL 179

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +A+GM M+ PT+IS+PFK++ FV +DGWSLLV  LV S+
Sbjct: 180 LALGMQMISPTTISVPFKLLLFVALDGWSLLVHGLVLSY 218


>gi|9663064|emb|CAC01097.1| FliP flagellar protein [Helicobacter pylori]
 gi|9663070|emb|CAC01100.1| FliP flagellar protein [Helicobacter pylori]
 gi|9663082|emb|CAC01104.1| FliP flagellar protein [Helicobacter pylori]
 gi|9663108|emb|CAC01117.1| FliP flagellar protein [Helicobacter pylori]
          Length = 160

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 69/156 (44%), Positives = 107/156 (68%), Gaps = 4/156 (2%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            + T+L +AP L++++T F R I+VFS LRT +G    PP  +++SL+L +TF++M P+L
Sbjct: 9   ALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL 68

Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163
            ++ + GI+P M+ +I+ T A ++ A PF  FM  NTREKDL+LF  + +  +  T    
Sbjct: 69  KKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTP--- 125

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
            D +   +LIP+FMISEL+ +F+IGFL+ LPFL+ID
Sbjct: 126 -DDVSLSVLIPAFMISELKTAFQIGFLLYLPFLVID 160


>gi|291086629|ref|ZP_06356304.2| type III secretion apparatus protein, YscR/HrcR family [Citrobacter
           youngae ATCC 29220]
 gi|291067492|gb|EFE05601.1| type III secretion apparatus protein, YscR/HrcR family [Citrobacter
           youngae ATCC 29220]
          Length = 218

 Score =  145 bits (366), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/199 (36%), Positives = 125/199 (62%), Gaps = 2/199 (1%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRSI 107
           LS+ P +++  T F +  IVFS+LR  +G+  +PPN+ I  LAL ++ ++M+P  +  + 
Sbjct: 20  LSVLPFIVVSCTSFIKLAIVFSLLRNALGIQQIPPNMSIYGLALILSLFIMAPVGMQIND 79

Query: 108 EMGIQPLMNNQITETTAIQR-VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
            +  +P+  N +     +   V +P+ VF++ NT+EK +  F  + H +       + + 
Sbjct: 80  NVQKEPISFNDVNLYERLDNSVLQPYLVFLQRNTKEKQIRYFSRIGHQTWPKKYQERLNK 139

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
               +++P+F I++L  +F+IG LI LPF+ ID+IV+ I++AMGMMM+ PT+ISLPFK++
Sbjct: 140 NSLFVMLPAFGITQLDEAFKIGLLIYLPFIAIDLIVSNILLAMGMMMVSPTTISLPFKIM 199

Query: 227 FFVLIDGWSLLVENLVKSF 245
            F++  GW  L+E LV SF
Sbjct: 200 LFIIAGGWQFLIEKLVLSF 218


>gi|9663100|emb|CAC01113.1| FliP flagellar protein [Helicobacter pylori]
          Length = 160

 Score =  145 bits (366), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 69/156 (44%), Positives = 106/156 (67%), Gaps = 4/156 (2%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            + T+L +AP L++++T F R I+VFS LRT +G    PP  +++SL+L +TF++M P L
Sbjct: 9   ALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPNL 68

Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163
            ++ + GI+P M+ +I+ T A ++ A PF  FM  NTREKDL+LF  + +  +  T    
Sbjct: 69  KKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTP--- 125

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
            D +   +LIP+FMISEL+ +F+IGFL+ LPFL+ID
Sbjct: 126 -DEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVID 160


>gi|302338093|ref|YP_003803299.1| flagellar biosynthetic protein FliP [Spirochaeta smaragdinae DSM
           11293]
 gi|301635278|gb|ADK80705.1| flagellar biosynthetic protein FliP [Spirochaeta smaragdinae DSM
           11293]
          Length = 260

 Score =  145 bits (366), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 76/202 (37%), Positives = 127/202 (62%), Gaps = 8/202 (3%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
            +++++P ++I+ TCF R  IVF  ++  + +  VPPN V++ +A+F+T ++M PT ++ 
Sbjct: 63  AVITLSPSIIILTTCFLRIAIVFDFIKRSLSLQQVPPNQVMMGVAIFLTIFIMWPTGEQI 122

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFM--RNNTREKDLSLFMDMAHSSHRNTDITKN 164
            +   +P  + +I         A P  +FM  + +   +++ LFM M     R     +N
Sbjct: 123 YQNSFRPFADGEIGIQEMYDEAAAPLRLFMYRQMDGDHENIQLFMRM-----RGLGKPEN 177

Query: 165 -DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
              +   +LIPSF++ EL  +F+IG L+ +PF+IIDM+VA+ +M+MGM+MLPP  ISLPF
Sbjct: 178 FSQVPTYVLIPSFVLHELTVAFKIGILLFVPFIIIDMVVASTLMSMGMIMLPPVMISLPF 237

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K+I FVL+DGW L+ + L+ SF
Sbjct: 238 KLILFVLVDGWDLITQQLILSF 259


>gi|289666110|ref|ZP_06487691.1| flagellar biosynthesis protein FliP [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 281

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 85/206 (41%), Positives = 127/206 (61%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++T  + T +++ P +L+++T F R  IV  +LR  +G G  P N V++ L++F+T  VM
Sbjct: 77  LQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQTPSNQVLLGLSMFLTALVM 136

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P   +    G+QP +NNQI  +TA     +P   FM    RE DL  F  MA       
Sbjct: 137 MPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIRETDLMTFAGMAGDGKY-- 194

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++VA+++M+MGMMML P  I
Sbjct: 195 --AGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLVVASVLMSMGMMMLSPMLI 252

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           S PFK++ F+L+DGW L+V  L  SF
Sbjct: 253 SAPFKILLFILVDGWVLVVGTLAASF 278


>gi|289670559|ref|ZP_06491634.1| flagellar biosynthesis protein FliP [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 276

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 85/206 (41%), Positives = 127/206 (61%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++T  + T +++ P +L+++T F R  IV  +LR  +G G  P N V++ L++F+T  VM
Sbjct: 72  LQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQTPSNQVLLGLSMFLTALVM 131

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P   +    G+QP +NNQI  +TA     +P   FM    RE DL  F  MA       
Sbjct: 132 MPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIRETDLMTFAGMAGDGKY-- 189

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++VA+++M+MGMMML P  I
Sbjct: 190 --AGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLVVASVLMSMGMMMLSPMLI 247

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           S PFK++ F+L+DGW L+V  L  SF
Sbjct: 248 SAPFKILLFILVDGWVLVVGTLAASF 273


>gi|126176172|ref|YP_001052321.1| flagellar biosynthesis protein FliP [Shewanella baltica OS155]
 gi|125999377|gb|ABN63452.1| flagellar biosynthetic protein FliP [Shewanella baltica OS155]
          Length = 244

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 87/246 (35%), Positives = 143/246 (58%), Gaps = 5/246 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           ++R    ++ L  P+ + ++      ++   D       +    + T +S  PI+L+M+T
Sbjct: 2   IVRVLLLSILLFAPQALASEGLTLFTLDSAQDSQAVNIKLEILALMTAISFLPIMLMMLT 61

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R IIV +ILR  +G+   PPN V++ +AL +T ++M P  D+  +    P    +I 
Sbjct: 62  SFTRIIIVLAILRQALGLQQSPPNRVLVGIALILTIFIMRPVGDKIYKEAYLPYDQGKIE 121

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS-SHRNTDITKNDHIEYRILIPSFMIS 179
              A+     P   FM   TR  DL   + +A+  +H  T     + + + +L+P+F++S
Sbjct: 122 LMEAVSIAKVPLTRFMLAQTRATDLEQMLKIANEPTHMKT----AEEVPFFVLMPAFVLS 177

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+ +F+IGFL+ LPFL+ID++VA+++M+MGMMML P  ISLPFK++ FVL+DGWS+ V 
Sbjct: 178 ELKTAFQIGFLLFLPFLVIDLVVASVLMSMGMMMLSPLIISLPFKLMVFVLVDGWSMTVS 237

Query: 240 NLVKSF 245
            L  SF
Sbjct: 238 TLTASF 243


>gi|327478782|gb|AEA82092.1| flagellar biosynthesis protein FliP [Pseudomonas stutzeri DSM 4166]
          Length = 251

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 83/200 (41%), Positives = 126/200 (63%), Gaps = 4/200 (2%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           I T+L   P +L+M+TCF RFIIV +ILR  +G+   PPN V+I +AL +T  VM P   
Sbjct: 52  IMTLLGFLPAMLMMMTCFTRFIIVLAILRQAIGLQQSPPNQVLIGIALIVTLLVMRPVWQ 111

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
                  +P  N++IT   A+         FM   T +  L   + +A       D+   
Sbjct: 112 EIHSQAYEPFHNDEITLEQALDSAKGSLAGFMLAQTNKNSLETMVALA-GEQLPEDL--- 167

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D +++ +L+P+F++SEL+ +F++GF+I +PFL+ID++VA+++MAMGMMML P  ISLPFK
Sbjct: 168 DELDFSLLLPAFVLSELKTAFQLGFMIFVPFLVIDLVVASVLMAMGMMMLSPMMISLPFK 227

Query: 225 VIFFVLIDGWSLLVENLVKS 244
           ++ FVL+DGW+LL+  L  S
Sbjct: 228 LMVFVLVDGWALLMGTLTTS 247


>gi|294828142|ref|NP_712792.2| flagellar biosynthesis protein FliP [Leptospira interrogans serovar
           Lai str. 56601]
 gi|293385989|gb|AAN49810.2| flagellar biosynthesis protein FliP [Leptospira interrogans serovar
           Lai str. 56601]
          Length = 251

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 78/202 (38%), Positives = 133/202 (65%), Gaps = 7/202 (3%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           TILS+AP +++ +T F + +IV   +R  + + ++PPN V++ LALFMTF++M+PTL+  
Sbjct: 53  TILSLAPAIVMSLTSFTKIVIVLDFVRRALSIQNLPPNQVMMGLALFMTFFIMAPTLNTV 112

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMR---NNTREKDLSLFMDMAHSSHRNTDITK 163
            E  + P +  +I      ++   P   FM      +  KD++LF+ +         +  
Sbjct: 113 NEKALGPYLEGKIDTNAFFEKGMIPIREFMMRQIGTSGAKDVALFLKIGKVEK----VES 168

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
            D +   +LIP+FM+SE++++F IG +I +PF++ID++VA+ +++MG+MMLPP  +SLPF
Sbjct: 169 FDDVPSYVLIPAFMLSEIKKAFWIGIVIFIPFIVIDLVVASALLSMGLMMLPPVMVSLPF 228

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K+I FVL+DGW+L+V  LV+S+
Sbjct: 229 KLILFVLVDGWNLIVYELVRSY 250


>gi|187918149|ref|YP_001883712.1| flagellar biosynthesis protein FliP [Borrelia hermsii DAH]
 gi|119860997|gb|AAX16792.1| flagellar biosynthetic protein FliP [Borrelia hermsii DAH]
          Length = 254

 Score =  145 bits (365), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 80/199 (40%), Positives = 125/199 (62%), Gaps = 9/199 (4%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           +P  L+++T F R  IV   +R  + +   PPN VI+ LALF+T + M PT +   +   
Sbjct: 61  SPAFLVLMTSFLRIAIVLDFIRRALSLQQSPPNQVIMGLALFLTLFTMWPTFNIIYKDAY 120

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMR---NNTREKDLSLFMDMAHSSHRNTDITKN-DHI 167
            PL +++I+      R   P   FM    +N++ +++ LFM +++ S       KN   +
Sbjct: 121 LPLKDSKISFNEFYDRGIAPLRNFMYKQMSNSKHEEIKLFMSISNYSR-----PKNFSEV 175

Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227
              +LI SF++ EL+ +F++G LI LPF++ID+IVA ++MAMGM+MLPP  ISLPFK+I 
Sbjct: 176 PTHVLIASFVLHELKVAFKMGILIFLPFIVIDIIVAAVLMAMGMIMLPPVMISLPFKLIL 235

Query: 228 FVLIDGWSLLVENLVKSFI 246
           FV++DGW+L+   LVKSF+
Sbjct: 236 FVMVDGWTLITSGLVKSFM 254


>gi|163802009|ref|ZP_02195905.1| translocation protein in type III secretion [Vibrio sp. AND4]
 gi|159174150|gb|EDP58958.1| translocation protein in type III secretion [Vibrio sp. AND4]
          Length = 216

 Score =  144 bits (364), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 73/201 (36%), Positives = 128/201 (63%), Gaps = 2/201 (0%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
            +L++ P + +M T F +  +VFS+LR  +G+  +PPN+ +  LA+ ++ ++M+P    +
Sbjct: 15  ALLALIPFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFET 74

Query: 107 IEMGIQPLMNNQITETTA--IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
            +   Q  ++ + +ET    I+   +P+  F++ + RE + + F D A +      + + 
Sbjct: 75  YDYVKQHDISLEDSETIEGLIESGLQPYREFLKKHIRETESAFFTDAAKTLWPQKYVDRL 134

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           +     +L+P+F +SEL R+FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK
Sbjct: 135 ESDSLLLLLPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISLPFK 194

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW+ L   LV S+
Sbjct: 195 LLLFVLLDGWTKLTHGLVLSY 215


>gi|114566400|ref|YP_753554.1| flagellar biosynthesis protein FliP [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114337335|gb|ABI68183.1| flagellar biosynthetic protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 240

 Score =  144 bits (364), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 98/218 (44%), Positives = 148/218 (67%), Gaps = 11/218 (5%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P DLS++  ++    + T+L++AP +LIM+T F R ++V + +RT +    +PPN ++I 
Sbjct: 31  PQDLSVALQLII---LITVLTLAPAILIMLTSFTRIMVVLAFIRTSLATQQMPPNQLLIG 87

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           +ALF+TF+VM+PT        +QP    +IT+  A ++   P   FM   TREKDL+LF+
Sbjct: 88  MALFLTFFVMAPTFQEVNSQALQPYFKGKITQEQAFEKGMNPLRSFMFKQTREKDLALFV 147

Query: 150 DMA--HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
            M+     H   DI         +LIPSF+ISEL+ +F+IGF+I +PFLIIDM+VA+ +M
Sbjct: 148 KMSKMERPHNFKDIPN------YVLIPSFVISELKTAFQIGFIIFIPFLIIDMVVASALM 201

Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +MGMMMLPP  ISLPFK++ FVL+DGW+L++++L+ SF
Sbjct: 202 SMGMMMLPPMMISLPFKILLFVLVDGWNLVIQSLILSF 239


>gi|45657250|ref|YP_001336.1| flagellar biosynthesis protein FliP [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45600488|gb|AAS69973.1| flagellar protein export system [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 267

 Score =  144 bits (364), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 78/202 (38%), Positives = 133/202 (65%), Gaps = 7/202 (3%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           TILS+AP +++ +T F + +IV   +R  + + ++PPN V++ LALFMTF++M+PTL+  
Sbjct: 69  TILSLAPAIVMSLTSFTKIVIVLDFVRRALSIQNLPPNQVMMGLALFMTFFIMAPTLNTV 128

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN---TREKDLSLFMDMAHSSHRNTDITK 163
            E  + P +  +I      ++   P   FM      +  KD++LF+ +         +  
Sbjct: 129 NEKALGPYLEGKIDTNAFFEKGMIPIREFMMRQIGTSGAKDVALFLKIGKVEK----VES 184

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
            D +   +LIP+FM+SE++++F IG +I +PF++ID++VA+ +++MG+MMLPP  +SLPF
Sbjct: 185 FDDVPSYVLIPAFMLSEIKKAFWIGIVIFIPFIVIDLVVASALLSMGLMMLPPVMVSLPF 244

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K+I FVL+DGW+L+V  LV+S+
Sbjct: 245 KLILFVLVDGWNLIVYELVRSY 266


>gi|166712022|ref|ZP_02243229.1| flagellar biosynthesis protein FliP [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 281

 Score =  144 bits (364), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 85/206 (41%), Positives = 127/206 (61%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++T  + T +++ P +L+++T F R  IV  +LR  +G G  P N V++ L++F+T  VM
Sbjct: 77  LQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQTPSNQVLLGLSMFLTALVM 136

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P   +    G+QP +NNQI  +TA     +P   FM    RE DL  F  MA       
Sbjct: 137 MPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIRETDLMTFAGMAGDGKY-- 194

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++VA+++M+MGMMML P  I
Sbjct: 195 --VGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLVVASVLMSMGMMMLSPMLI 252

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           S PFK++ F+L+DGW L+V  L  SF
Sbjct: 253 SAPFKILLFILVDGWVLVVGTLAASF 278


>gi|58582234|ref|YP_201250.1| flagellar biosynthesis protein FliP [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84624127|ref|YP_451499.1| flagellar biosynthesis protein FliP [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|58426828|gb|AAW75865.1| flagellar biosynthetic protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84368067|dbj|BAE69225.1| flagellar biosynthetic protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 281

 Score =  144 bits (364), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 85/206 (41%), Positives = 127/206 (61%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++T  + T +++ P +L+++T F R  IV  +LR  +G G  P N V++ L++F+T  VM
Sbjct: 77  LQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQTPSNQVLLGLSMFLTALVM 136

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P   +    G+QP +NNQI  +TA     +P   FM    RE DL  F  MA       
Sbjct: 137 MPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIRETDLMTFAGMAGDGKY-- 194

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++VA+++M+MGMMML P  I
Sbjct: 195 --VGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLVVASVLMSMGMMMLSPMLI 252

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           S PFK++ F+L+DGW L+V  L  SF
Sbjct: 253 SAPFKILLFILVDGWVLVVGTLAASF 278


>gi|332298229|ref|YP_004440151.1| flagellar biosynthetic protein FliP [Treponema brennaborense DSM
           12168]
 gi|332181332|gb|AEE17020.1| flagellar biosynthetic protein FliP [Treponema brennaborense DSM
           12168]
          Length = 277

 Score =  144 bits (364), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 76/197 (38%), Positives = 118/197 (59%), Gaps = 6/197 (3%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +LI++TCF RF IV   ++  + +  VPP  V+  +A FMT ++M PT     +   
Sbjct: 84  APSILILLTCFLRFSIVLDFIKRALSLQQVPPTAVLNGIAFFMTLFIMWPTFTDIYDNSF 143

Query: 112 QPLMNNQITETTAIQRVAEPFWVFM--RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169
           +PL + +I    A      P  +FM  +  T    ++LFM M       T      H+  
Sbjct: 144 KPLSDGEIGIEAAFTEAEAPLRIFMFKQMGTNTDYITLFMSMGGLDRPQTLADVPSHV-- 201

Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
             LIP+++++EL  +F+IG L+ +PF++IDM+VA+++M+MGM+MLPP  IS+PFK++ FV
Sbjct: 202 --LIPAYILNELTVAFKIGVLLYIPFIVIDMVVASVLMSMGMIMLPPVQISMPFKLMLFV 259

Query: 230 LIDGWSLLVENLVKSFI 246
           LIDGW LL + L  S +
Sbjct: 260 LIDGWGLLTQQLFNSIV 276


>gi|10955564|ref|NP_052405.1| type III secretion system protein [Yersinia enterocolitica]
 gi|28373022|ref|NP_783679.1| type III secretion system protein [Yersinia enterocolitica]
 gi|32470292|ref|NP_863527.1| type III secretion system protein [Yersinia enterocolitica]
 gi|122815816|ref|YP_001004082.1| type III secretion system protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|332163586|ref|YP_004424928.1| type III secretion system protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|14579350|gb|AAK69227.1|AF336309_22 YscR [Yersinia enterocolitica]
 gi|4324351|gb|AAD16828.1| YscR [Yersinia enterocolitica W22703]
 gi|23630594|gb|AAN37550.1| YscR [Yersinia enterocolitica]
 gi|121663690|emb|CAL10052.1| putative type III secretion protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|310923235|emb|CBW54701.1| YscR, T3SS component [Yersinia enterocolitica (type O:8)]
 gi|318608197|emb|CBY78171.1| type III secretion inner membrane protein
           (YscR,SpaR,HrcR,EscR,homologous to flagellar export
           components) [Yersinia enterocolitica subsp. palearctica
           Y11]
 gi|325667816|gb|ADZ44459.1| type III secretion system protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 217

 Score =  144 bits (364), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 74/198 (37%), Positives = 123/198 (62%), Gaps = 16/198 (8%)

Query: 57  IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
           +M T F +F +VFS+LR  +G+  +PPN+ +  LA+ ++ YVM+P     +    Q  + 
Sbjct: 25  VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAP-----VGFATQDYLQ 79

Query: 117 NQITETTAIQRVAE-------PFWVFMRNNTREKDLSLFMDMAHS--SHRNTDITKNDHI 167
                 T I+ V +       P+ +F++ + + ++ S F+D        +  D  ++D +
Sbjct: 80  ANEVSLTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSL 139

Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227
              IL+P+F +SEL R+FEIGFLI LPF++ID++++ I++AMGMMM+ P +ISLPFK++ 
Sbjct: 140 --FILLPAFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISLPFKLLL 197

Query: 228 FVLIDGWSLLVENLVKSF 245
           FVL+DGW+ L   LV S+
Sbjct: 198 FVLLDGWTRLTHGLVISY 215


>gi|46578461|ref|YP_009269.1| flagellar biosynthesis protein FliP [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120603955|ref|YP_968355.1| flagellar biosynthesis protein FliP [Desulfovibrio vulgaris DP4]
 gi|46447872|gb|AAS94528.1| flagellar biosynthetic protein fliP [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120564184|gb|ABM29928.1| flagellar biosynthetic protein FliP [Desulfovibrio vulgaris DP4]
          Length = 235

 Score =  144 bits (364), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 85/202 (42%), Positives = 134/202 (66%), Gaps = 4/202 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T+LS+AP +++ VT F R IIVF  +R  +G+ ++PP+ V+ SLA+FMT  +M+P   
Sbjct: 37  MLTVLSLAPAIMLTVTSFTRIIIVFHFVRQALGVQALPPSQVLASLAIFMTVVIMTPVGK 96

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              +  +QP +  +I    A+++   P   FM  +TREKDLS+F    ++  +       
Sbjct: 97  EINDNALQPYLREEIGFNEALKKAEAPMRTFMFKHTREKDLSVF----YAVTKMEQPRSK 152

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D +   +L   ++ISEL+  F IGFLI +PFLI+DM++++I++AMGMMMLPP  +S+PFK
Sbjct: 153 DDVPTIMLAAGYVISELKTGFTIGFLIYIPFLILDMVISSILLAMGMMMLPPMMVSMPFK 212

Query: 225 VIFFVLIDGWSLLVENLVKSFI 246
           ++ FV++DGW LLV +LV SF+
Sbjct: 213 LLLFVMVDGWGLLVGSLVNSFM 234


>gi|188576794|ref|YP_001913723.1| flagellar biosynthesis protein FliP [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188576986|ref|YP_001913915.1| flagellar biosynthesis protein FliP [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188521246|gb|ACD59191.1| flagellar biosynthetic protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188521438|gb|ACD59383.1| flagellar biosynthetic protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 281

 Score =  144 bits (364), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 85/206 (41%), Positives = 127/206 (61%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++T  + T +++ P +L+++T F R  IV  +LR  +G G  P N V++ L++F+T  VM
Sbjct: 77  LQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQTPSNQVLLGLSMFLTALVM 136

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P   +    G+QP +NNQI  +TA     +P   FM    RE DL  F  MA       
Sbjct: 137 MPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIRETDLMTFAGMAGDGKY-- 194

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++VA+++M+MGMMML P  I
Sbjct: 195 --VGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLVVASVLMSMGMMMLSPMLI 252

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           S PFK++ F+L+DGW L+V  L  SF
Sbjct: 253 SAPFKILLFILVDGWVLVVGTLAASF 278


>gi|254523353|ref|ZP_05135408.1| flagellar biosynthetic protein FliP [Stenotrophomonas sp. SKA14]
 gi|219720944|gb|EED39469.1| flagellar biosynthetic protein FliP [Stenotrophomonas sp. SKA14]
          Length = 259

 Score =  144 bits (364), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 88/207 (42%), Positives = 130/207 (62%), Gaps = 6/207 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++T  + T +++ P +L+++T F R IIV  +LR  +G G  P N V++ LALF+T  VM
Sbjct: 55  LQTLLLMTAITLIPSMLLVLTSFTRIIIVLGLLRQALGTGQTPSNQVLLGLALFLTAMVM 114

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-HSSHRN 158
            PT D++   G+ P +N +I   TA      P   FM    RE DL  F  +A H ++ +
Sbjct: 115 MPTWDKAWSTGMAPYLNGEIDFQTAWTLTTTPLRGFMLAQIRETDLMTFAGIAGHGTYAS 174

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
                 D I + +L+ SF+ SEL+ +FEIGFLI +PF+IID++VA+++M+MGMMML P  
Sbjct: 175 -----PDAIPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLVVASVLMSMGMMMLSPML 229

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +S PFK++ FVL+DGW L V  L  SF
Sbjct: 230 VSAPFKILLFVLVDGWVLTVGTLAASF 256


>gi|108763107|ref|YP_630667.1| type III secretion system protein [Myxococcus xanthus DK 1622]
 gi|108466987|gb|ABF92172.1| FliP/MopC/SpaP family protein [Myxococcus xanthus DK 1622]
          Length = 231

 Score =  144 bits (364), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 72/207 (34%), Positives = 124/207 (59%), Gaps = 9/207 (4%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP---TLDR 105
           + + P  L+M T F +  +V SI+R+ +G   +PP  VI  LA+ +T Y+M+P    + R
Sbjct: 25  MGLVPFALMMATSFVKISVVLSIVRSALGTQQIPPTQVITGLAIILTVYIMAPVGQQMYR 84

Query: 106 SIEMGIQPLMNNQITETT------AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +  + I        +  T      A  +  EP   ++      KD +LF ++A    +  
Sbjct: 85  AAGLDIWAKGPGVFSSETVGSMLGAANKSKEPLREWLIKKVTTKDRALFFNLAKKMRKGE 144

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           D    +  ++ ++IP+F++SEL+ +F+IGFL+ +PF++IDM+VA I++A+GM ML PT+I
Sbjct: 145 DRDAVESNDFMVIIPAFVVSELKEAFQIGFLLFVPFIVIDMVVANILLALGMHMLSPTTI 204

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
           S+PFK++ FVL+DGW L+ + LV  ++
Sbjct: 205 SMPFKLLLFVLVDGWYLIAKGLVVGYL 231


>gi|150020821|ref|YP_001306175.1| flagellar biosynthesis protein FliP [Thermosipho melanesiensis
           BI429]
 gi|149793342|gb|ABR30790.1| flagellar biosynthetic protein FliP [Thermosipho melanesiensis
           BI429]
          Length = 251

 Score =  144 bits (364), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 74/198 (37%), Positives = 121/198 (61%), Gaps = 9/198 (4%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +LI+ T F R I+VFS +R  +G    PPN ++I LALF+TF++M P  +      I
Sbjct: 56  APSILILFTSFTRIIVVFSFVRNALGTRQTPPNQILIGLALFLTFFIMQPVWNDIYNNAI 115

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTR----EKDLSLFMDMAHSSHRNTDITKNDHI 167
            P +N++I       R  +    FM    +    E ++ +  +       N + T N   
Sbjct: 116 TPYLNSEIGYEEMFSRSMDRLRTFMLTEIKIHHNEDNIYILAENVKKQIDNIEDTPNS-- 173

Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227
              ILIP+F+I EL   F++G L+ +PF+++DM+VA+I++++GM+M+PP  +SLPFK++ 
Sbjct: 174 ---ILIPAFVIGELEIGFKMGILLYIPFIVMDMVVASILLSLGMIMIPPVLVSLPFKILL 230

Query: 228 FVLIDGWSLLVENLVKSF 245
           FVL++GW +L+ +L+KSF
Sbjct: 231 FVLVNGWDILIGSLIKSF 248


>gi|16082732|ref|NP_395178.1| type III secretion system protein [Yersinia pestis CO92]
 gi|31795277|ref|NP_857738.1| type III secretion system protein [Yersinia pestis KIM]
 gi|31795479|ref|NP_857933.1| type III secretion system protein [Yersinia pestis KIM]
 gi|45478540|ref|NP_995367.1| type III secretion system protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51593913|ref|YP_068480.1| type III secretion system protein [Yersinia pseudotuberculosis IP
           32953]
 gi|108793660|ref|YP_636810.1| type III secretion system protein [Yersinia pestis Antiqua]
 gi|145597138|ref|YP_001154602.1| type III secretion system protein [Yersinia pestis Pestoides F]
 gi|149192695|ref|YP_001293927.1| type III secretion system protein [Yersinia pestis CA88-4125]
 gi|162417761|ref|YP_001604476.1| type III secretion system protein [Yersinia pestis Angola]
 gi|165927798|ref|ZP_02223630.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165940058|ref|ZP_02228592.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011710|ref|ZP_02232608.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166214467|ref|ZP_02240502.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401968|ref|ZP_02307454.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167422404|ref|ZP_02314157.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167422439|ref|ZP_02314192.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167422881|ref|ZP_02314634.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426865|ref|ZP_02318618.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|186897578|ref|YP_001874689.1| type III secretion system protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|229896860|ref|ZP_04512020.1| putative Yop secretion membrane protein [Yersinia pestis Pestoides
           A]
 gi|229900215|ref|ZP_04515351.1| putative Yop secretion membrane protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|294496839|ref|YP_003560536.1| needle complex export protein [Yersinia pestis Z176003]
 gi|322836570|ref|YP_004210066.1| type III secretion apparatus protein YscR [Yersinia pestis Java 9]
 gi|57015234|sp|P69980|YSCR_YERPE RecName: Full=Yop proteins translocation protein R
 gi|57015235|sp|P69981|YSCR_YERPS RecName: Full=Yop proteins translocation protein R
 gi|475123|gb|AAA27678.1| yscR [Yersinia pseudotuberculosis]
 gi|2465659|gb|AAB72201.1| YscR [Yersinia pestis]
 gi|2996237|gb|AAC62560.1| Yop proteins translocation protein R homolog [Yersinia pestis KIM
           10]
 gi|3822067|gb|AAC69787.1| type III secretion protein [Yersinia pestis KIM 10]
 gi|5832464|emb|CAB54921.1| putative Yop secretion membrane protein [Yersinia pestis CO92]
 gi|45357162|gb|AAS58558.1| putative Yop secretion membrane protein YscR [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51591610|emb|CAF25414.1| yscR; putative Yop secretion membrane protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|108782207|gb|ABG16262.1| Yop secretion membrane protein [Yersinia pestis Antiqua]
 gi|145212906|gb|ABP42312.1| Yop secretion membrane protein [Yersinia pestis Pestoides F]
 gi|148872353|gb|ABR14843.1| putative Yop secretion membrane protein [Yersinia pestis CA88-4125]
 gi|162354781|gb|ABX88728.1| type III secretion apparatus protein YscR [Yersinia pestis Angola]
 gi|165911968|gb|EDR30611.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165920234|gb|EDR37535.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989317|gb|EDR41618.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166204360|gb|EDR48840.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166958171|gb|EDR55192.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|166958641|gb|EDR55662.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|166958676|gb|EDR55697.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048696|gb|EDR60104.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167054164|gb|EDR63991.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|186700604|gb|ACC91232.1| Yop virulence translocation R [Yersinia pseudotuberculosis PB1/+]
 gi|229686735|gb|EEO78815.1| putative Yop secretion membrane protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229700131|gb|EEO88170.1| putative Yop secretion membrane protein [Yersinia pestis Pestoides
           A]
 gi|262363850|gb|ACY60570.1| needle complex export protein [Yersinia pestis D106004]
 gi|262364007|gb|ACY64344.1| needle complex export protein [Yersinia pestis D182038]
 gi|294352427|gb|ADE66484.1| needle complex export protein [Yersinia pestis Z176003]
 gi|317374480|gb|ADV16655.1| type III secretion inner membrane protein [Yersinia pestis]
 gi|321161344|gb|ADW67050.1| type III secretion apparatus protein YscR [Yersinia pestis Java 9]
          Length = 217

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 74/198 (37%), Positives = 123/198 (62%), Gaps = 16/198 (8%)

Query: 57  IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
           +M T F +F +VFS+LR  +G+  +PPN+ +  LA+ ++ YVM+P     +    Q  + 
Sbjct: 25  VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAP-----VGFATQDYLQ 79

Query: 117 NQITETTAIQRVAE-------PFWVFMRNNTREKDLSLFMDMAHS--SHRNTDITKNDHI 167
                 T I+ V +       P+ +F++ + + ++ S F+D        +  D  ++D +
Sbjct: 80  ANEVSLTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSL 139

Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227
              IL+P+F +SEL R+FEIGFLI LPF++ID++++ I++AMGMMM+ P +ISLPFK++ 
Sbjct: 140 --FILLPAFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISLPFKLLL 197

Query: 228 FVLIDGWSLLVENLVKSF 245
           FVL+DGW+ L   LV S+
Sbjct: 198 FVLLDGWTRLTHGLVISY 215


>gi|190574229|ref|YP_001972074.1| flagellar biosynthesis protein FliP [Stenotrophomonas maltophilia
           K279a]
 gi|194365647|ref|YP_002028257.1| flagellar biosynthesis protein FliP [Stenotrophomonas maltophilia
           R551-3]
 gi|190012151|emb|CAQ45774.1| putative flagellar biosynthetic protein [Stenotrophomonas
           maltophilia K279a]
 gi|194348451|gb|ACF51574.1| flagellar biosynthetic protein FliP [Stenotrophomonas maltophilia
           R551-3]
          Length = 259

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 88/207 (42%), Positives = 130/207 (62%), Gaps = 6/207 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++T  + T +++ P +L+++T F R IIV  +LR  +G G  P N V++ LALF+T  VM
Sbjct: 55  LQTLLLMTAITLIPSMLLVLTSFTRIIIVLGLLRQALGTGQTPSNQVLLGLALFLTAMVM 114

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-HSSHRN 158
            PT D++   G+ P +N +I   TA      P   FM    RE DL  F  +A H ++ +
Sbjct: 115 MPTWDKAWSTGMAPYLNGEIDFQTAWTLTTTPLRGFMLAQIRETDLMTFAGIAGHGTYAS 174

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
                 D I + +L+ SF+ SEL+ +FEIGFLI +PF+IID++VA+++M+MGMMML P  
Sbjct: 175 -----PDAIPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLVVASVLMSMGMMMLSPML 229

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +S PFK++ FVL+DGW L V  L  SF
Sbjct: 230 VSAPFKILLFVLVDGWVLTVGTLAASF 256


>gi|9663102|emb|CAC01114.1| FliP flagellar protein [Helicobacter pylori]
          Length = 160

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 68/156 (43%), Positives = 106/156 (67%), Gaps = 4/156 (2%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            + T+L +AP L++++T F R I+VFS LRT +G    PP  +++SL+L +TF++M P+L
Sbjct: 9   ALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL 68

Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163
            ++ + GI+P M+ +I+ T A ++   PF  FM  NTREKDL+LF  + +  +  T    
Sbjct: 69  KKAYDTGIKPYMDKKISYTEAFEKSTLPFKEFMLKNTREKDLALFFRIRNLPNPKTP--- 125

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
            D +   +LIP+FMISEL+ +F+IGFL+ LPFL+ID
Sbjct: 126 -DEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVID 160


>gi|311232389|gb|ADP85243.1| flagellar biosynthetic protein FliP [Desulfovibrio vulgaris RCH1]
          Length = 232

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/202 (42%), Positives = 134/202 (66%), Gaps = 4/202 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T+LS+AP +++ VT F R IIVF  +R  +G+ ++PP+ V+ SLA+FMT  +M+P   
Sbjct: 34  MLTVLSLAPAIMLTVTSFTRIIIVFHFVRQALGVQALPPSQVLASLAIFMTVVIMTPVGK 93

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              +  +QP +  +I    A+++   P   FM  +TREKDLS+F    ++  +       
Sbjct: 94  EINDNALQPYLREEIGFNEALKKAEAPMRTFMFKHTREKDLSVF----YAVTKMEQPRSK 149

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D +   +L   ++ISEL+  F IGFLI +PFLI+DM++++I++AMGMMMLPP  +S+PFK
Sbjct: 150 DDVPTIMLAAGYVISELKTGFTIGFLIYIPFLILDMVISSILLAMGMMMLPPMMVSMPFK 209

Query: 225 VIFFVLIDGWSLLVENLVKSFI 246
           ++ FV++DGW LLV +LV SF+
Sbjct: 210 LLLFVMVDGWGLLVGSLVNSFM 231


>gi|225552062|ref|ZP_03773002.1| flagellar biosynthetic protein FliP [Borrelia sp. SV1]
 gi|225371060|gb|EEH00490.1| flagellar biosynthetic protein FliP [Borrelia sp. SV1]
          Length = 254

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 76/199 (38%), Positives = 123/199 (61%), Gaps = 9/199 (4%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           +P  L+++T F R  IV   +R  + +   PP  +++ LALF+T + M PT +   E   
Sbjct: 61  SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNSMYEQAY 120

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMR---NNTREKDLSLFMDMAHSSHRNTDITKN-DHI 167
            PL  ++I       +   P  +FM    ++ R +++ LFM M+     N D  KN   +
Sbjct: 121 LPLKESKINFNEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSMS-----NYDRPKNFSEV 175

Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227
              +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP  ISLPFK+I 
Sbjct: 176 PTHVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLIL 235

Query: 228 FVLIDGWSLLVENLVKSFI 246
           FV++DGW+L+   L+KSF+
Sbjct: 236 FVMVDGWTLITSGLIKSFM 254


>gi|153003617|ref|YP_001377942.1| type III secretion system protein [Anaeromyxobacter sp. Fw109-5]
 gi|152027190|gb|ABS24958.1| Yop virulence translocation R [Anaeromyxobacter sp. Fw109-5]
          Length = 223

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 115/189 (60%), Gaps = 2/189 (1%)

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           M+T F + ++V SI R+ +G   VPPN  +  LAL +T  VM+P  +R++         +
Sbjct: 34  MLTSFLKIVVVLSIARSALGAPQVPPNTAVTGLALVLTALVMAPVGERAVAAMRAAPAGH 93

Query: 118 QITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
            +  T A ++R ++P   F+    R  D + F+D+A    R  D       +  +L P+F
Sbjct: 94  GVAGTLAQLERGSDPLRGFLLRFARADDRAAFVDVARR-LRGPDAAPPAERDLAVLAPAF 152

Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
           ++SELRR+F IGFL+ +PFL++D++V+ +++A+G+  L PTSI+LPFK++ FV +DGW L
Sbjct: 153 VVSELRRAFTIGFLVFVPFLVVDLVVSNVLLALGLTQLSPTSIALPFKLLLFVAVDGWKL 212

Query: 237 LVENLVKSF 245
           L   L  S+
Sbjct: 213 LARALALSY 221


>gi|304412524|ref|ZP_07394130.1| flagellar biosynthetic protein FliP [Shewanella baltica OS183]
 gi|307307183|ref|ZP_07586921.1| flagellar biosynthetic protein FliP [Shewanella baltica BA175]
 gi|304349166|gb|EFM13578.1| flagellar biosynthetic protein FliP [Shewanella baltica OS183]
 gi|306910422|gb|EFN40853.1| flagellar biosynthetic protein FliP [Shewanella baltica BA175]
          Length = 244

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/204 (40%), Positives = 128/204 (62%), Gaps = 5/204 (2%)

Query: 43  FGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT 102
             + T +S  PI+L+M+T F R IIV +ILR  +G+   PPN V++ +AL +T ++M P 
Sbjct: 44  LALMTAISFLPIMLMMLTSFTRIIIVLAILRQALGLQQSPPNRVLVGIALILTIFIMRPV 103

Query: 103 LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS-SHRNTDI 161
            D+  +    P    +I    A+     P   FM   TR  DL   + +A+  +H  T  
Sbjct: 104 GDKIYKEAYLPYDQGKIELMEAVSIAKVPLTRFMLAQTRATDLEQMLKIANEPTHMKT-- 161

Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
              + + + +L+P+F++SEL+ +F+IGFL+ LPFL+ID++VA+++M+MGMMML P  ISL
Sbjct: 162 --AEEVPFFVLMPAFVLSELKTAFQIGFLLFLPFLVIDLVVASVLMSMGMMMLSPLIISL 219

Query: 222 PFKVIFFVLIDGWSLLVENLVKSF 245
           PFK++ FVL+DGWS+ V  L  SF
Sbjct: 220 PFKLMVFVLVDGWSMTVSTLTASF 243


>gi|226320576|ref|ZP_03796136.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 29805]
 gi|226233995|gb|EEH32716.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 29805]
          Length = 254

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 76/199 (38%), Positives = 123/199 (61%), Gaps = 9/199 (4%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           +P  L+++T F R  IV   +R  + +   PP  +++ LALF+T + M PT +   E   
Sbjct: 61  SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNSIYEQAY 120

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMR---NNTREKDLSLFMDMAHSSHRNTDITKN-DHI 167
            PL  ++I       +   P  +FM    ++ R +++ LFM M+     N D  KN   +
Sbjct: 121 LPLKESKINFNEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSMS-----NYDRPKNFSEV 175

Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227
              +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP  ISLPFK+I 
Sbjct: 176 PTHVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLIL 235

Query: 228 FVLIDGWSLLVENLVKSFI 246
           FV++DGW+L+   L+KSF+
Sbjct: 236 FVMVDGWTLITSGLIKSFM 254


>gi|15594620|ref|NP_212409.1| flagellar biosynthesis protein FliP [Borrelia burgdorferi B31]
 gi|218249847|ref|YP_002374798.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi ZS7]
 gi|226321593|ref|ZP_03797119.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi Bol26]
 gi|2494561|sp|Q44763|FLIP_BORBU RecName: Full=Flagellar biosynthetic protein fliP
 gi|1165260|gb|AAA85599.1| FliP [Borrelia burgdorferi]
 gi|2688191|gb|AAC66673.1| flagellar biosynthesis protein (fliP) [Borrelia burgdorferi B31]
 gi|218165035|gb|ACK75096.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi ZS7]
 gi|226232782|gb|EEH31535.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi Bol26]
 gi|312149165|gb|ADQ29236.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi N40]
          Length = 254

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 76/199 (38%), Positives = 123/199 (61%), Gaps = 9/199 (4%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           +P  L+++T F R  IV   +R  + +   PP  +++ LALF+T + M PT +   E   
Sbjct: 61  SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNSIYEQAY 120

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMR---NNTREKDLSLFMDMAHSSHRNTDITKN-DHI 167
            PL  ++I       +   P  +FM    ++ R +++ LFM M+     N D  KN   +
Sbjct: 121 LPLKESKINFNEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSMS-----NYDRPKNFSEV 175

Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227
              +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP  ISLPFK+I 
Sbjct: 176 PTHVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLIL 235

Query: 228 FVLIDGWSLLVENLVKSFI 246
           FV++DGW+L+   L+KSF+
Sbjct: 236 FVMVDGWTLITSGLIKSFM 254


>gi|329897649|ref|ZP_08272173.1| Flagellar biosynthesis protein fliP [gamma proteobacterium
           IMCC3088]
 gi|328921098|gb|EGG28507.1| Flagellar biosynthesis protein fliP [gamma proteobacterium
           IMCC3088]
          Length = 250

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/208 (43%), Positives = 137/208 (65%), Gaps = 7/208 (3%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++  G+ TIL++ P LL+M+T F R IIV S+LR  MG    PPN V++ LALF+T ++M
Sbjct: 45  LQLLGLMTILTLLPSLLLMMTSFTRIIIVLSLLRQAMGTAQTPPNQVLLGLALFLTIFIM 104

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +P      E  IQP +N++I    A+ R   P   F+   TRE D+  F+     S  N 
Sbjct: 105 TPVATVVNEEAIQPYVNSEIGLEDALLRAQVPIKTFLLQQTRESDIQTFI-----SLLND 159

Query: 160 DITKN--DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
           D+  N  + +   IL+P+F+ SEL+ +F IGF++ +PF++ID++VA+I+M+MGMMML P 
Sbjct: 160 DVQYNTPNDLPLNILVPAFIASELKSAFTIGFMLYIPFVVIDLVVASILMSMGMMMLSPM 219

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
            ISLPFK++ FV++DGW+LL+ +L  SF
Sbjct: 220 MISLPFKLLLFVMVDGWNLLIGSLAGSF 247


>gi|9663072|emb|CAC01101.1| FliP flagellar protein [Helicobacter pylori]
          Length = 160

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/156 (43%), Positives = 106/156 (67%), Gaps = 4/156 (2%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            + T+L +AP L++++T F R I+VFS LRT +G    PP  +++SL+L +TF++M P+L
Sbjct: 9   ALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL 68

Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163
            ++ + GI+P M+ +I+ T A ++   PF  FM  NTREKDL+LF  + +  +  T    
Sbjct: 69  KKAYDTGIKPYMDKKISYTEAFEKSTLPFKEFMLKNTREKDLALFFRIRNLPNPKTP--- 125

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
            D +   +LIP+FMISEL+ +F+IGFL+ LPFL+ID
Sbjct: 126 -DDVSLSVLIPAFMISELKTAFQIGFLLYLPFLVID 160


>gi|107025882|ref|YP_623393.1| type III secretion system protein [Burkholderia cenocepacia AU
           1054]
 gi|116692934|ref|YP_838467.1| type III secretion system protein [Burkholderia cenocepacia HI2424]
 gi|170737801|ref|YP_001779061.1| Yop virulence translocation R [Burkholderia cenocepacia MC0-3]
 gi|206563883|ref|YP_002234646.1| type III secretion system protein [Burkholderia cenocepacia J2315]
 gi|254250206|ref|ZP_04943526.1| Yop virulence translocation protein R [Burkholderia cenocepacia
           PC184]
 gi|18092662|gb|AAK50140.1| BcscR [Burkholderia cenocepacia]
 gi|105895256|gb|ABF78420.1| Yop virulence translocation R [Burkholderia cenocepacia AU 1054]
 gi|116650934|gb|ABK11574.1| Yop virulence translocation R [Burkholderia cenocepacia HI2424]
 gi|124876707|gb|EAY66697.1| Yop virulence translocation protein R [Burkholderia cenocepacia
           PC184]
 gi|169819989|gb|ACA94571.1| Yop virulence translocation R [Burkholderia cenocepacia MC0-3]
 gi|198039923|emb|CAR55900.1| type III secretion system protein [Burkholderia cenocepacia J2315]
          Length = 224

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/215 (36%), Positives = 136/215 (63%), Gaps = 13/215 (6%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V    +   L IAP   +MVT + + ++V  +LR+ +G+  VPPNLV+  +AL ++ ++M
Sbjct: 8   VALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIM 67

Query: 100 SPTLDRSIEMGIQPL---MNNQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMA 152
           +P +  SI   +Q      + Q++ T+ I  +A+    P   F+ ++TR++D   F+  A
Sbjct: 68  AP-VGMSIRDALQARHFDASGQLS-TSDIGALADAALPPIKDFLVSHTRQRDREFFVRTA 125

Query: 153 HS--SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
            S       D  K+D  +  +L+PSF ++EL ++F+IGF+I + F+++D++VA I++A+G
Sbjct: 126 TSVWPKNRADGIKDD--DLLVLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANILLALG 183

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M M+ PT+IS+PFK++ FV +DGWSLLV  LV S+
Sbjct: 184 MQMISPTTISVPFKLLLFVALDGWSLLVHGLVLSY 218


>gi|9663098|emb|CAC01112.1| FliP flagellar protein [Helicobacter pylori]
          Length = 160

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/156 (43%), Positives = 106/156 (67%), Gaps = 4/156 (2%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            + T+L +AP L++++T F R I+VFS LRT +G    PP  +++SL+L +TF++M P+L
Sbjct: 9   ALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSL 68

Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163
            ++ + GI+P M+ +I+   A ++ A PF  FM  NTREKDL+LF  + +  +  T    
Sbjct: 69  KKAYDTGIKPYMDKKISYIEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTP--- 125

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
            D +   +LIP+FMISEL+ +F+IGFL+ LPFL+ID
Sbjct: 126 -DEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVID 160


>gi|217077267|ref|YP_002334985.1| flagellar biosynthesis protein FliP [Thermosipho africanus TCF52B]
 gi|217037122|gb|ACJ75644.1| flagellar biosynthetic protein FliP [Thermosipho africanus TCF52B]
          Length = 251

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 74/196 (37%), Positives = 122/196 (62%), Gaps = 5/196 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +LI+ T F R IIVFS LR  +G    PPN ++I LALF+TF++M P  +      I
Sbjct: 56  APSILILFTSFTRIIIVFSFLRNALGTRQTPPNQILIGLALFLTFFIMQPVWNDIYNNAI 115

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTR--EKDLSLFMDMAHSSHRNTDITKNDHIEY 169
            P +N++I       R  +    FM    +    + ++FM    + +   +I   +    
Sbjct: 116 TPYLNSEIGYEELFSRSMDRLRTFMITELKIHHNEDNVFM---LADNVGKEIDSVEEAPN 172

Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
            +LIP+F+I EL   F++G L+ +PF+++DM+VA+I++++GM+M+PP  +SLPFK++ FV
Sbjct: 173 SVLIPAFVIGELEIGFKMGILLYIPFIVMDMVVASILLSLGMIMIPPVLVSLPFKILLFV 232

Query: 230 LIDGWSLLVENLVKSF 245
           L++GW +L+ +L+KSF
Sbjct: 233 LVNGWDMLIGSLIKSF 248


>gi|54124952|gb|AAV30220.1| AscR [Aeromonas hydrophila]
          Length = 217

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 127/206 (61%), Gaps = 12/206 (5%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
            +L++ P + +M T F +  +VFS+LR  +G+  +PPN+ +  LA+ ++ YVM+P     
Sbjct: 15  ALLALLPFIAVMATSFVKLAVVFSLLRNALGVQQIPPNMAMYGLAIILSIYVMAP----- 69

Query: 107 IEMGIQPLMNNQ---ITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +    Q  ++     +T++ ++++  +    P+  F++   + ++ + F+D       + 
Sbjct: 70  VGFATQGYLHQNEVSLTKSESVEKFLDEGMAPYRAFLKKQIKPREHAFFIDSTKQLWPSE 129

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
              + +     IL+P+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P +I
Sbjct: 130 YADRLEPDSLLILLPAFTVSELSRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTI 189

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW+ L   LV S+
Sbjct: 190 SLPFKLLLFVLLDGWARLTHGLVTSY 215


>gi|254254345|ref|ZP_04947662.1| Type III secretory pathway component EscR [Burkholderia dolosa
           AUO158]
 gi|124898990|gb|EAY70833.1| Type III secretory pathway component EscR [Burkholderia dolosa
           AUO158]
          Length = 224

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 78/215 (36%), Positives = 135/215 (62%), Gaps = 13/215 (6%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V    +   L IAP   +MVT + + ++V  +LR+ +G+  VPPNLV+  +AL ++ ++M
Sbjct: 8   VALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIM 67

Query: 100 SPTLDRSIEMGIQPL---MNNQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMA 152
           +P +  SI   +Q      + Q++ T  +  +A+    P   F+ ++TR++D   F+  A
Sbjct: 68  AP-VGMSIRDALQARHFDASGQLS-TADVGALADAALPPIKEFLVSHTRQRDREFFVRTA 125

Query: 153 HS--SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
            S   +   D  K+D  +  +L+PSF ++EL ++F IGF+I + F+++D++VA I++A+G
Sbjct: 126 TSVWPNNRADAIKDD--DLLVLVPSFTLAELTKAFHIGFVIYIVFIVVDLLVANILLALG 183

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M M+ PT+IS+PFK++ FV +DGWSLLV  LV S+
Sbjct: 184 MQMIAPTTISVPFKLLLFVALDGWSLLVHGLVLSY 218


>gi|161503487|ref|YP_001570599.1| type III secretion system protein [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864834|gb|ABX21457.1| hypothetical protein SARI_01563 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 215

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 78/212 (36%), Positives = 128/212 (60%), Gaps = 11/212 (5%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++  GI  +LSI P++++M T F +  +VFSILR  +G+  VPPN+ +  LAL ++ ++M
Sbjct: 8   LQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIM 67

Query: 100 SPTL----DR--SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
            PTL    +R   +++   P   ++        +   P+  F++ N+ EK+ S F ++  
Sbjct: 68  GPTLLAVKERWHPVQVADAPFWMSEWDS-----KALAPYRQFLQKNSEEKEASYFRNLIK 122

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
            +       K       ILIP+F +S+L ++F IG LI LPFL ID++++ I++AMGMMM
Sbjct: 123 RTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMM 182

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           + P +ISLPFK++ F+L  GW L +  LV+SF
Sbjct: 183 VSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF 214


>gi|161520303|ref|YP_001583730.1| type III secretion system protein [Burkholderia multivorans ATCC
           17616]
 gi|189353518|ref|YP_001949145.1| type III secretion system protein [Burkholderia multivorans ATCC
           17616]
 gi|160344353|gb|ABX17438.1| Yop virulence translocation R [Burkholderia multivorans ATCC 17616]
 gi|189337540|dbj|BAG46609.1| type III secretion protein SctR [Burkholderia multivorans ATCC
           17616]
          Length = 224

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 78/215 (36%), Positives = 135/215 (62%), Gaps = 13/215 (6%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V    +   L IAP   +MVT + + ++V  +LR+ +G+  VPPNLV+  +AL ++ ++M
Sbjct: 8   VALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGVQQVPPNLVLNGIALILSLFIM 67

Query: 100 SPTLDRSIEMGIQPL---MNNQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMA 152
           +P +  SI   +Q      + Q++ T  +  +A+    P   F+ ++TR++D   F+  A
Sbjct: 68  AP-VGMSIRDALQARHFDASGQLS-TADVGALADAALPPIKDFLVSHTRQRDREFFVRTA 125

Query: 153 HS--SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
            S       D  K+D  +  +L+PSF ++EL ++F+IGF+I + F+++D++VA I++A+G
Sbjct: 126 TSVWPKNRADGIKDD--DLLVLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANILLALG 183

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M M+ PT+IS+PFK++ FV +DGWSLLV  LV S+
Sbjct: 184 MQMISPTTISVPFKLLLFVALDGWSLLVHGLVLSY 218


>gi|195941371|ref|ZP_03086753.1| flagellar biosynthesis protein FliP [Borrelia burgdorferi 80a]
 gi|224533102|ref|ZP_03673702.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi WI91-23]
 gi|224511829|gb|EEF82230.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi WI91-23]
          Length = 254

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 76/199 (38%), Positives = 123/199 (61%), Gaps = 9/199 (4%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           +P  L+++T F R  IV   +R  + +   PP  +++ LALF+T + M PT +   E   
Sbjct: 61  SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNSIYEQAY 120

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMR---NNTREKDLSLFMDMAHSSHRNTDITKN-DHI 167
            PL  ++I       +   P  +FM    ++ R +++ LFM M+     N D  KN   +
Sbjct: 121 LPLKESKINFNEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSMS-----NYDRPKNFSEV 175

Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227
              +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP  ISLPFK+I 
Sbjct: 176 PTHVLIVAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLIL 235

Query: 228 FVLIDGWSLLVENLVKSFI 246
           FV++DGW+L+   L+KSF+
Sbjct: 236 FVMVDGWTLITSGLIKSFM 254


>gi|16764769|ref|NP_460384.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|56413610|ref|YP_150685.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62180010|ref|YP_216427.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161614164|ref|YP_001588129.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167551612|ref|ZP_02345366.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|167995053|ref|ZP_02576143.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168233614|ref|ZP_02658672.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|168239303|ref|ZP_02664361.1| type III secretion apparatus protein, YscR/HrcR family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168240932|ref|ZP_02665864.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168263749|ref|ZP_02685722.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168463171|ref|ZP_02697102.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|194448961|ref|YP_002045422.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194472648|ref|ZP_03078632.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194736899|ref|YP_002114432.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197266014|ref|ZP_03166088.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197362534|ref|YP_002142171.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|198242436|ref|YP_002215713.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200390900|ref|ZP_03217511.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204927846|ref|ZP_03219047.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|224584070|ref|YP_002637868.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238913178|ref|ZP_04657015.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|2494570|sp|P74890|YSCR_SALTY RecName: Full=Virulence protein yscR
 gi|1526985|emb|CAA68199.1| secretion system apparatus, SsaR [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|16419940|gb|AAL20343.1| secretion system apparatus protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|56127867|gb|AAV77373.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62127643|gb|AAX65346.1| Secretion system apparatus SsaR [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161363528|gb|ABX67296.1| hypothetical protein SPAB_01906 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194407265|gb|ACF67484.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194459012|gb|EDX47851.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194712401|gb|ACF91622.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|195634326|gb|EDX52678.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197094011|emb|CAR59507.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197244269|gb|EDY26889.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197288009|gb|EDY27396.1| type III secretion apparatus protein, YscR/HrcR family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197936952|gb|ACH74285.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|199603345|gb|EDZ01891.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204323188|gb|EDZ08384.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205323559|gb|EDZ11398.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205327197|gb|EDZ13961.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205332323|gb|EDZ19087.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|205339292|gb|EDZ26056.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205347547|gb|EDZ34178.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|224468597|gb|ACN46427.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261246625|emb|CBG24435.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267993308|gb|ACY88193.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157954|emb|CBW17449.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912404|dbj|BAJ36378.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321224041|gb|EFX49104.1| Type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|322615097|gb|EFY12020.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619938|gb|EFY16811.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622250|gb|EFY19095.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627772|gb|EFY24562.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632883|gb|EFY29627.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636626|gb|EFY33329.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641181|gb|EFY37823.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644884|gb|EFY41417.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650280|gb|EFY46694.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655853|gb|EFY52155.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660179|gb|EFY56418.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665255|gb|EFY61443.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669512|gb|EFY65660.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673438|gb|EFY69540.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677366|gb|EFY73430.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322679971|gb|EFY76010.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687443|gb|EFY83415.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322714477|gb|EFZ06048.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323129691|gb|ADX17121.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323194104|gb|EFZ79303.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198585|gb|EFZ83686.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202911|gb|EFZ87946.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208631|gb|EFZ93569.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211167|gb|EFZ96014.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217608|gb|EGA02323.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323218957|gb|EGA03467.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323223787|gb|EGA08091.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229410|gb|EGA13533.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323232633|gb|EGA16729.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240329|gb|EGA24373.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242682|gb|EGA26703.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323245893|gb|EGA29881.1| type III secretion system protein YscR [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252457|gb|EGA36304.1| type III secretion system protein YscR [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256476|gb|EGA40209.1| type III secretion system protein YscR [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260039|gb|EGA43664.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323271479|gb|EGA54900.1| type III secretion system protein YscR [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326623460|gb|EGE29805.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|332988306|gb|AEF07289.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 215

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 77/212 (36%), Positives = 128/212 (60%), Gaps = 11/212 (5%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++  GI  +LSI P++++M T F +  +VFSILR  +G+  VPPN+ +  LAL ++ ++M
Sbjct: 8   LQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIM 67

Query: 100 SPTL----DR--SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
            PTL    +R   +++   P   ++        +   P+  F++ N+ EK+ + F ++  
Sbjct: 68  GPTLLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLIK 122

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
            +       K       ILIP+F +S+L ++F IG LI LPFL ID++++ I++AMGMMM
Sbjct: 123 RTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMM 182

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           + P +ISLPFK++ F+L  GW L +  LV+SF
Sbjct: 183 VSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF 214


>gi|15596890|ref|NP_250384.1| type III secretion system protein [Pseudomonas aeruginosa PAO1]
 gi|116049643|ref|YP_791552.1| type III secretion system protein [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|254234792|ref|ZP_04928115.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           C3719]
 gi|254240038|ref|ZP_04933360.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           2192]
 gi|313110379|ref|ZP_07796268.1| LOW QUALITY PROTEIN: translocation protein in type III secretion
           [Pseudomonas aeruginosa 39016]
 gi|9947666|gb|AAG05082.1|AE004596_8 translocation protein in type III secretion [Pseudomonas aeruginosa
           PAO1]
 gi|115584864|gb|ABJ10879.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126166723|gb|EAZ52234.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           C3719]
 gi|126193416|gb|EAZ57479.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           2192]
 gi|310882770|gb|EFQ41364.1| LOW QUALITY PROTEIN: translocation protein in type III secretion
           [Pseudomonas aeruginosa 39016]
          Length = 217

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 72/200 (36%), Positives = 124/200 (62%), Gaps = 12/200 (6%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P + +M T F +  +VFS+LR  +G+  +PPN+ +  LA+ ++ YVM+P     +    +
Sbjct: 21  PFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAP-----VGFATR 75

Query: 113 PLMNNQ---ITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165
             + N    ++++ +++R  +    P+  F++   +E++ + FM+       +    + D
Sbjct: 76  DYLRNHDVSLSDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLD 135

Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225
                IL+P+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P +ISLPFK+
Sbjct: 136 PDSLLILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISLPFKL 195

Query: 226 IFFVLIDGWSLLVENLVKSF 245
           + FVL+DGW+ L   LV S+
Sbjct: 196 LLFVLLDGWARLTHGLVISY 215


>gi|221209604|ref|ZP_03582585.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia multivorans CGD1]
 gi|221170292|gb|EEE02758.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia multivorans CGD1]
          Length = 224

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 75/218 (34%), Positives = 132/218 (60%), Gaps = 19/218 (8%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V    +   L IAP   +MVT + + ++V  +LR+ +G+  VPPNLV+  +AL ++ ++M
Sbjct: 8   VALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIM 67

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAE----------PFWVFMRNNTREKDLSLFM 149
           +P     + M I+  +  +  +T+     A+          P   F+ ++TR++D   F+
Sbjct: 68  AP-----VGMSIRDALQARHFDTSGQLSTADVGVLADAALPPIKDFLVSHTRQRDRDFFV 122

Query: 150 DMAHS--SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
             A S       D  ++D  +  +L+PSF ++EL ++F+IGF+I + F+++D++VA I++
Sbjct: 123 RTATSVWPKNRADAIRDD--DLLVLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANILL 180

Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           A+GM M+ PT+IS+PFK++ FV +DGWSLLV  LV S+
Sbjct: 181 ALGMQMISPTTISVPFKLLLFVALDGWSLLVHGLVLSY 218


>gi|325920564|ref|ZP_08182486.1| flagellar biosynthetic protein FliP [Xanthomonas gardneri ATCC
           19865]
 gi|325548957|gb|EGD19889.1| flagellar biosynthetic protein FliP [Xanthomonas gardneri ATCC
           19865]
          Length = 279

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 84/206 (40%), Positives = 126/206 (61%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++T  + T +++ P +L+++T F R  IV  +LR  +G G  P N V++ L++F+T  VM
Sbjct: 75  LQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQTPSNQVLLGLSMFLTALVM 134

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P   +    G+ P +NNQI  +TA     +P   FM    RE DL  F  MA       
Sbjct: 135 MPVWQKMWGAGLSPYLNNQIDFSTAWTLTTQPLRAFMLAQIRETDLMTFAGMAGDGKY-- 192

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++VA+++M+MGMMML P  I
Sbjct: 193 --AGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLVVASVLMSMGMMMLSPMLI 250

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           S PFK++ F+L+DGW L+V  L  SF
Sbjct: 251 SAPFKILLFILVDGWVLVVGTLAASF 276


>gi|216264896|ref|ZP_03436888.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 156a]
 gi|221217753|ref|ZP_03589221.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 72a]
 gi|223888889|ref|ZP_03623480.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 64b]
 gi|224533771|ref|ZP_03674359.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi CA-11.2a]
 gi|225549012|ref|ZP_03769987.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 94a]
 gi|225550173|ref|ZP_03771133.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 118a]
 gi|215981369|gb|EEC22176.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 156a]
 gi|221192430|gb|EEE18649.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 72a]
 gi|223885705|gb|EEF56804.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 64b]
 gi|224513064|gb|EEF83427.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi CA-11.2a]
 gi|225369285|gb|EEG98738.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 118a]
 gi|225370238|gb|EEG99676.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 94a]
 gi|312148186|gb|ADQ30845.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi JD1]
          Length = 254

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 75/199 (37%), Positives = 123/199 (61%), Gaps = 9/199 (4%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           +P  L+++T F R  IV   +R  + +   PP  +++ LALF+T + M PT +   E   
Sbjct: 61  SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNSIYEQAY 120

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMR---NNTREKDLSLFMDMAHSSHRNTDITKN-DHI 167
            PL  ++I       +   P  +FM    ++ R +++ LFM M+     N D  +N   +
Sbjct: 121 LPLKESKINFNEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSMS-----NYDRPRNFSEV 175

Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227
              +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP  ISLPFK+I 
Sbjct: 176 PTHVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLIL 235

Query: 228 FVLIDGWSLLVENLVKSFI 246
           FV++DGW+L+   L+KSF+
Sbjct: 236 FVMVDGWTLITSGLIKSFM 254


>gi|262284525|gb|ACY41062.1| VscR [Vibrio alginolyticus]
          Length = 216

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 73/203 (35%), Positives = 126/203 (62%), Gaps = 6/203 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP----T 102
            +L++ P + +M T F +  +VFS+LR  +G+  +PPN+ +  LA+ ++ ++M+P    T
Sbjct: 15  ALLALIPFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFET 74

Query: 103 LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT 162
            D   +  I   + +  +    I+   +P+  F++ + RE ++  F D A +      + 
Sbjct: 75  YDYVKQHDIS--LEDSASVEGLIESGLQPYREFLKKHIRETEVIFFTDAARTLWPQKYVD 132

Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
           + +     +L+P+F +SEL R+FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ P +ISLP
Sbjct: 133 RLESDSLLLLLPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISLP 192

Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245
           FK++ FVL+DGW+ L   LV S+
Sbjct: 193 FKLLLFVLLDGWTKLTHGLVLSY 215


>gi|197248361|ref|YP_002146623.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197212064|gb|ACH49461.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
          Length = 215

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 77/212 (36%), Positives = 128/212 (60%), Gaps = 11/212 (5%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++  GI  +LSI P++++M T F +  +VFSILR  +G+  VPPN+ +  LAL ++ ++M
Sbjct: 8   LQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIM 67

Query: 100 SPTL----DR--SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
            PTL    +R   +++   P   ++        +   P+  F++ N+ EK+ + F ++  
Sbjct: 68  GPTLLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLIK 122

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
            +       K       ILIP+F +S+L ++F IG LI LPFL ID++++ I++AMGMMM
Sbjct: 123 RTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMM 182

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           + P +ISLPFK++ F+L  GW L +  LV+SF
Sbjct: 183 VSPMTISLPFKLLIFLLAGGWDLTLAKLVQSF 214


>gi|134294005|ref|YP_001117741.1| type III secretion system protein [Burkholderia vietnamiensis G4]
 gi|134137162|gb|ABO58276.1| Yop virulence translocation R [Burkholderia vietnamiensis G4]
          Length = 224

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 78/214 (36%), Positives = 133/214 (62%), Gaps = 11/214 (5%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V    +   L IAP   +MVT + + ++V  +LR+ +G+  VPPNLV+  +AL ++ ++M
Sbjct: 8   VALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIM 67

Query: 100 SPTLDRSIEMGIQPLMNNQITE--TTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAH 153
           +P +  SI   +Q    +   +  T  I  +A+    P   F+ ++TR++D   F+  A 
Sbjct: 68  AP-VGMSIRDALQARHFDAAGQLSTADIGVLADAALPPIKDFLVSHTRQRDREFFVRTAT 126

Query: 154 S--SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           S       D  K+D  +  +L+PSF ++EL ++F+IGF+I + F+++D++VA I++A+GM
Sbjct: 127 SVWPKNRADGIKDD--DLLVLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANILLALGM 184

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            M+ PT+IS+PFK++ FV +DGWSLLV  LV S+
Sbjct: 185 QMISPTTISVPFKLLLFVALDGWSLLVHGLVLSY 218


>gi|296389923|ref|ZP_06879398.1| type III secretion system protein [Pseudomonas aeruginosa PAb1]
          Length = 219

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 72/200 (36%), Positives = 124/200 (62%), Gaps = 12/200 (6%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P + +M T F +  +VFS+LR  +G+  +PPN+ +  LA+ ++ YVM+P     +    +
Sbjct: 21  PFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAP-----VGFATR 75

Query: 113 PLMNNQ---ITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165
             + N    ++++ +++R  +    P+  F++   +E++ + FM+       +    + D
Sbjct: 76  DYLRNHDVSLSDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLD 135

Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225
                IL+P+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P +ISLPFK+
Sbjct: 136 PDSLLILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISLPFKL 195

Query: 226 IFFVLIDGWSLLVENLVKSF 245
           + FVL+DGW+ L   LV S+
Sbjct: 196 LLFVLLDGWARLTHGLVISY 215


>gi|49078404|gb|AAT49781.1| PA1693 [synthetic construct]
          Length = 218

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 72/200 (36%), Positives = 124/200 (62%), Gaps = 12/200 (6%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P + +M T F +  +VFS+LR  +G+  +PPN+ +  LA+ ++ YVM+P     +    +
Sbjct: 21  PFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAP-----VGFATR 75

Query: 113 PLMNNQ---ITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165
             + N    ++++ +++R  +    P+  F++   +E++ + FM+       +    + D
Sbjct: 76  DYLRNHDVSLSDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLD 135

Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225
                IL+P+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P +ISLPFK+
Sbjct: 136 PDSLLILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISLPFKL 195

Query: 226 IFFVLIDGWSLLVENLVKSF 245
           + FVL+DGW+ L   LV S+
Sbjct: 196 LLFVLLDGWARLTHGLVISY 215


>gi|153832450|ref|ZP_01985117.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio
           harveyi HY01]
 gi|156974015|ref|YP_001444922.1| type III secretion system protein [Vibrio harveyi ATCC BAA-1116]
 gi|41834184|gb|AAS13322.1| VscR [Vibrio harveyi]
 gi|148871245|gb|EDL70117.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio
           harveyi HY01]
 gi|156525609|gb|ABU70695.1| hypothetical protein VIBHAR_01726 [Vibrio harveyi ATCC BAA-1116]
          Length = 216

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 72/201 (35%), Positives = 127/201 (63%), Gaps = 2/201 (0%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
            +L++ P + +M T F +  +VFS+LR  +G+  +PPN+ +  LA+ ++ ++M+P    +
Sbjct: 15  ALLALIPFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFET 74

Query: 107 IEMGIQPLMNNQITETTA--IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
            +   Q  ++ + +E+    I+   +P+  F++ + RE +   F D A +      + + 
Sbjct: 75  YDYVTQHEISLEDSESIEGLIESGLQPYREFLKKHIRETESVFFTDAARTLWPQKYVDRL 134

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           +     +L+P+F +SEL R+FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK
Sbjct: 135 ESDSLLLLLPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISLPFK 194

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW+ L   LV S+
Sbjct: 195 LLLFVLLDGWTKLTHGLVLSY 215


>gi|320538198|ref|ZP_08038093.1| flagellar biosynthetic protein FliP [Treponema phagedenis F0421]
 gi|320145015|gb|EFW36736.1| flagellar biosynthetic protein FliP [Treponema phagedenis F0421]
          Length = 273

 Score =  142 bits (359), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 79/200 (39%), Positives = 120/200 (60%), Gaps = 6/200 (3%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108
           ++IAP LL+++T F R  IV   ++  + +  VPP  V+  +ALF+T ++M P  +    
Sbjct: 78  IAIAPSLLLLMTSFLRISIVLDFIKRALSLQQVPPTQVLNGIALFLTLFIMWPVFNEVYT 137

Query: 109 MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD--LSLFMDMAHSSHRNTDITKNDH 166
              +P+ + +I   TA     +P  +FM          ++L M MA     NT      H
Sbjct: 138 NSFKPMADGEINIETAYTEAEKPIRLFMYKQMAHDSSYITLCMSMAKLPKPNTLADVPTH 197

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
           I    LIP+F++ EL  +F+IG  + LPF+IIDM+VA+I+M+MGM+MLPP  IS+PFK+I
Sbjct: 198 I----LIPAFILHELTIAFQIGIFLYLPFIIIDMVVASILMSMGMIMLPPVQISMPFKLI 253

Query: 227 FFVLIDGWSLLVENLVKSFI 246
            FVL+DGW+LL+  L  SF+
Sbjct: 254 LFVLVDGWNLLIGQLFYSFL 273


>gi|269105051|ref|ZP_06157746.1| yop virulence translocation protein R [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268160686|gb|EEZ39184.1| yop virulence translocation protein R [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 216

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 72/201 (35%), Positives = 127/201 (63%), Gaps = 2/201 (0%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
            +L++ P + +M T F +  +VFS+LR  +G+  +PPN+ +  LA+ ++ ++M+P    +
Sbjct: 15  ALLALIPFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMAMYGLAIILSIFIMAPVGFET 74

Query: 107 IEMGIQPLMNNQITETTA--IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
            +   Q  ++ + +E+    I+   +P+  F++ + RE +   F D A +      + + 
Sbjct: 75  YDYVTQHEISLEDSESIEGLIESGLQPYREFLKKHIRETESVFFTDAARTLWPQKYVDRL 134

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           +     +L+P+F +SEL R+FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK
Sbjct: 135 ESDSLLLLLPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISLPFK 194

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW+ L   LV S+
Sbjct: 195 LLLFVLLDGWTKLTHGLVLSY 215


>gi|115358964|ref|YP_776102.1| type III secretion system protein [Burkholderia ambifaria AMMD]
 gi|170704157|ref|ZP_02894758.1| Yop virulence translocation R [Burkholderia ambifaria IOP40-10]
 gi|171323089|ref|ZP_02911721.1| Yop virulence translocation R [Burkholderia ambifaria MEX-5]
 gi|172063756|ref|YP_001811407.1| Yop virulence translocation R [Burkholderia ambifaria MC40-6]
 gi|115284252|gb|ABI89768.1| Yop virulence translocation R [Burkholderia ambifaria AMMD]
 gi|170130935|gb|EDS99661.1| Yop virulence translocation R [Burkholderia ambifaria IOP40-10]
 gi|171091518|gb|EDT37148.1| Yop virulence translocation R [Burkholderia ambifaria MEX-5]
 gi|171996273|gb|ACB67191.1| Yop virulence translocation R [Burkholderia ambifaria MC40-6]
          Length = 224

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 79/215 (36%), Positives = 136/215 (63%), Gaps = 13/215 (6%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V    +   L IAP   +MVT + + ++V  +LR+ +G+  VPPNLV+  +AL ++ ++M
Sbjct: 8   VALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIM 67

Query: 100 SPTLDRSIEMGIQPL---MNNQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMA 152
           +P +  SI   +Q      + Q++ T+ I  +A+    P   F+ ++TR++D   F+  A
Sbjct: 68  AP-VGMSIRDALQSRHFDASGQLS-TSDIGVLADAALPPIKDFLVSHTRQRDREFFVRTA 125

Query: 153 HS--SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
            S       D  K+D  +  +L+PSF ++EL ++F+IGF+I + F+++D++VA I++A+G
Sbjct: 126 TSVWPKNRADGIKDD--DLLVLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANILLALG 183

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M M+ PT+IS+PFK++ FV +DGWSLLV  LV S+
Sbjct: 184 MQMISPTTISVPFKLLLFVALDGWSLLVHGLVLSY 218


>gi|91795011|ref|YP_564662.1| flagellar biosynthesis protein FliP [Shewanella denitrificans
           OS217]
 gi|91717013|gb|ABE56939.1| flagellar biosynthetic protein FliP [Shewanella denitrificans
           OS217]
          Length = 243

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 84/203 (41%), Positives = 126/203 (62%), Gaps = 4/203 (1%)

Query: 43  FGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT 102
             + T LS  P +L+M+T F R ++V +ILR  +G+   PPN V+I +AL +T ++M P 
Sbjct: 44  LALMTALSFLPAMLMMLTSFTRIVVVLAILRQALGLQQSPPNKVLIGIALVLTLFIMRPV 103

Query: 103 LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT 162
            D   +    P    +I    AI     P   FM   TRE DL     M   ++   D+T
Sbjct: 104 GDSIYKEAYLPYDQGKIELMAAIDIAKVPLSQFMLAQTRETDLE---QMLKIANEPIDLT 160

Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
             + I + +L+P+F++SEL+ +F+IGFL+ LPFL+ID++VA+++M+MGMMML P  ISLP
Sbjct: 161 PAE-IPFLVLMPAFVLSELKTAFQIGFLLFLPFLVIDLVVASVLMSMGMMMLSPLIISLP 219

Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245
           FK++ FVL+DGW++ V  L  SF
Sbjct: 220 FKLMIFVLVDGWAMTVSTLTASF 242


>gi|257457603|ref|ZP_05622770.1| flagellar biosynthetic protein FliP [Treponema vincentii ATCC
           35580]
 gi|257444989|gb|EEV20065.1| flagellar biosynthetic protein FliP [Treponema vincentii ATCC
           35580]
          Length = 269

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 77/197 (39%), Positives = 117/197 (59%), Gaps = 6/197 (3%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +L+++T F R  I    ++  + +  VPP  V+  +ALF+T ++M PT     +   
Sbjct: 77  APSILLLMTSFLRLSIALDFIKRALSLQQVPPTQVLNGIALFLTIFIMWPTFTEIYDKSF 136

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTRE--KDLSLFMDMAHSSHRNTDITKNDHIEY 169
           +P+ + QI   TA     +P  +FM          + L M +A     NT      H+  
Sbjct: 137 KPMADGQINIETAYTEAEKPLRLFMYKQMAHDPSHIRLCMSLARMDKPNTLADVPTHV-- 194

Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
             LIP+F++ EL  +F+IG  + LPF+IIDM+VA+I+M+MGM+MLPP  IS+PFK+I FV
Sbjct: 195 --LIPAFILHELTVAFQIGIFLYLPFIIIDMVVASILMSMGMIMLPPVQISMPFKLILFV 252

Query: 230 LIDGWSLLVENLVKSFI 246
           L+DGW+LLV  L +SF+
Sbjct: 253 LVDGWNLLVGQLFQSFL 269


>gi|238752375|ref|ZP_04613853.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia
           rohdei ATCC 43380]
 gi|238709416|gb|EEQ01656.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia
           rohdei ATCC 43380]
          Length = 216

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 80/195 (41%), Positives = 122/195 (62%), Gaps = 6/195 (3%)

Query: 56  LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRSIEMGIQPL 114
           ++M T F +  IVFS+LR  +G+  VPPN+ I  LAL +T ++M+P  LD    +  +PL
Sbjct: 24  MVMGTSFLKLSIVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVHARLQDEPL 83

Query: 115 MNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHSS--HRNTDITKNDHIEYRI 171
            N        I   A EP+  F++ NT  +    F D+  +    R  D  K++ +   I
Sbjct: 84  PNEIGALLHHIDEHALEPYRDFLQRNTDVEQAKFFNDIVQTKWPERYRDTIKSNSL--LI 141

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           L+P+F +S+L  +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK++ F+LI
Sbjct: 142 LMPAFTLSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMVSPITISLPFKLLIFILI 201

Query: 232 DGWSLLVENLVKSFI 246
           DGW LL+  LV S++
Sbjct: 202 DGWGLLLGQLVGSYL 216


>gi|269963170|ref|ZP_06177505.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832134|gb|EEZ86258.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 216

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 72/201 (35%), Positives = 127/201 (63%), Gaps = 2/201 (0%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
            +L++ P + +M T F +  +VFS+LR  +G+  +PPN+ +  LA+ ++ ++M+P    +
Sbjct: 15  ALLALIPFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFET 74

Query: 107 IEMGIQPLMNNQITETTA--IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
            +   Q  ++ + +E+    I+   +P+  F++ + RE +   F D A +      + + 
Sbjct: 75  YDYVTQHEISLEDSESIEGLIESGLQPYREFLKTHIRETESVFFTDAARTLWPQKYVDRL 134

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           +     +L+P+F +SEL R+FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK
Sbjct: 135 ESDSLLLLLPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISLPFK 194

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW+ L   LV S+
Sbjct: 195 LLLFVLLDGWTKLTHGLVLSY 215


>gi|107101125|ref|ZP_01365043.1| hypothetical protein PaerPA_01002157 [Pseudomonas aeruginosa PACS2]
          Length = 217

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 72/200 (36%), Positives = 123/200 (61%), Gaps = 12/200 (6%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P + +M T F +  +VFS+LR  +G+  +PPN+ +  LA+ ++ YVM+P     +    +
Sbjct: 21  PFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAP-----VGFATR 75

Query: 113 PLMNNQ---ITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165
             + N    + ++ +++R  +    P+  F++   +E++ + FM+       +    + D
Sbjct: 76  DYLRNHDVSLNDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLD 135

Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225
                IL+P+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P +ISLPFK+
Sbjct: 136 PDSLLILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISLPFKL 195

Query: 226 IFFVLIDGWSLLVENLVKSF 245
           + FVL+DGW+ L   LV S+
Sbjct: 196 LLFVLLDGWARLTHGLVISY 215


>gi|168822289|ref|ZP_02834289.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194445968|ref|YP_002040671.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|205352865|ref|YP_002226666.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207857075|ref|YP_002243726.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|194404631|gb|ACF64853.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|205272646|emb|CAR37556.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205341300|gb|EDZ28064.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|206708878|emb|CAR33208.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|309243393|gb|ADO51969.1| SsaR [Salmonella enterica subsp. enterica serovar Gallinarum]
 gi|320086102|emb|CBY95876.1| Virulence protein yscR [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|326627937|gb|EGE34280.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 215

 Score =  142 bits (358), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 77/212 (36%), Positives = 127/212 (59%), Gaps = 11/212 (5%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++  GI  +LSI P++++M T F +  +VFSILR  +G+  VPPN+ +  LAL ++ ++M
Sbjct: 8   LQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIM 67

Query: 100 SPTL----DR--SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
            PTL    +R   +++   P   ++        +   P+  F++ N+ EK+ + F  +  
Sbjct: 68  GPTLLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRSLIK 122

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
            +       K       ILIP+F +S+L ++F IG LI LPFL ID++++ I++AMGMMM
Sbjct: 123 RTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMM 182

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           + P +ISLPFK++ F+L  GW L +  LV+SF
Sbjct: 183 VSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF 214


>gi|218670285|ref|ZP_03519956.1| flagellar biosynthesis protein FliP [Rhizobium etli GR56]
          Length = 96

 Score =  142 bits (357), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/97 (70%), Positives = 85/97 (87%), Gaps = 2/97 (2%)

Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
           +D+A    R  +I  +D I+YR+LIP+FMISE+RR FEIGFL++LPFL+ID+IVATI MA
Sbjct: 1   VDLAR--ERGQNIQTSDPIDYRVLIPAFMISEIRRGFEIGFLVVLPFLVIDLIVATITMA 58

Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MGMMMLPPTSISLPFK++FFVLIDGW+LLV +LV+SF
Sbjct: 59  MGMMMLPPTSISLPFKILFFVLIDGWNLLVGSLVRSF 95


>gi|218887305|ref|YP_002436626.1| flagellar biosynthesis protein FliP [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758259|gb|ACL09158.1| flagellar biosynthetic protein FliP [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 293

 Score =  142 bits (357), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 85/201 (42%), Positives = 132/201 (65%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T+LS+AP +++ VT F R IIVF  +R  +G+  +PP+ V+ SLA+FMT  +M P   
Sbjct: 95  MLTVLSLAPAIMLTVTSFTRIIIVFHFIRQALGVQQLPPSQVLASLAIFMTVVIMMPVGK 154

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +  +  +QP +  +I    A+ +   P   FM  +TREKDLS+F  +       T     
Sbjct: 155 QINDTALQPYLEERIGFNEALDKAQVPLRSFMFKHTREKDLSIFYAITKMEQPRT----K 210

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           + +   +L  +++ISEL+  F IGFLI +PFL++DM+V++I++AMGMMMLPP  +S+PFK
Sbjct: 211 EEVPTVMLAAAYVISELKTGFTIGFLIYIPFLVLDMVVSSILLAMGMMMLPPMMVSMPFK 270

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FV++DGW+LLV +LV SF
Sbjct: 271 LLLFVMVDGWALLVGSLVNSF 291


>gi|28898446|ref|NP_798051.1| type III secretion system protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|91224470|ref|ZP_01259732.1| translocation protein in type III secretion [Vibrio alginolyticus
           12G01]
 gi|153836136|ref|ZP_01988803.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio
           parahaemolyticus AQ3810]
 gi|254228243|ref|ZP_04921672.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio sp.
           Ex25]
 gi|260365110|ref|ZP_05777681.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio
           parahaemolyticus K5030]
 gi|260876607|ref|ZP_05888962.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio
           parahaemolyticus AN-5034]
 gi|260895032|ref|ZP_05903528.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio
           parahaemolyticus Peru-466]
 gi|260900957|ref|ZP_05909352.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio
           parahaemolyticus AQ4037]
 gi|262394133|ref|YP_003285987.1| yop virulence translocation protein R [Vibrio sp. Ex25]
 gi|269967239|ref|ZP_06181303.1| translocation protein in type III secretion [Vibrio alginolyticus
           40B]
 gi|28806663|dbj|BAC59935.1| translocation protein in type III secretion [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|91190812|gb|EAS77079.1| translocation protein in type III secretion [Vibrio alginolyticus
           12G01]
 gi|149750411|gb|EDM61156.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio
           parahaemolyticus AQ3810]
 gi|151939316|gb|EDN58145.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio sp.
           Ex25]
 gi|262337727|gb|ACY51522.1| yop virulence translocation protein R [Vibrio sp. Ex25]
 gi|269828095|gb|EEZ82365.1| translocation protein in type III secretion [Vibrio alginolyticus
           40B]
 gi|308085950|gb|EFO35645.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio
           parahaemolyticus Peru-466]
 gi|308093573|gb|EFO43268.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio
           parahaemolyticus AN-5034]
 gi|308110848|gb|EFO48388.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio
           parahaemolyticus AQ4037]
 gi|308111579|gb|EFO49119.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio
           parahaemolyticus K5030]
 gi|328468941|gb|EGF39901.1| type III secretion system protein YscR [Vibrio parahaemolyticus
           10329]
          Length = 216

 Score =  142 bits (357), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 73/203 (35%), Positives = 125/203 (61%), Gaps = 6/203 (2%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP----T 102
            +L++ P + +M T F +  +VFS+LR  +G+  +PPN+ +  LA+ ++ ++M+P    T
Sbjct: 15  ALLALIPFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIMAPVGFET 74

Query: 103 LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT 162
            D   +  I   + +  +    I+   +P+  F++ + RE +   F D A +      + 
Sbjct: 75  YDYVKQHDIS--LEDSASVEGLIESGLQPYREFLKKHIRETEAIFFTDAARTLWPQKYVD 132

Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
           + +     +L+P+F +SEL R+FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ P +ISLP
Sbjct: 133 RLESDSLLLLLPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISLP 192

Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245
           FK++ FVL+DGW+ L   LV S+
Sbjct: 193 FKLLLFVLLDGWTKLTHGLVLSY 215


>gi|325519943|gb|EGC99198.1| type III secretion system protein YscR [Burkholderia sp. TJI49]
          Length = 224

 Score =  142 bits (357), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 78/216 (36%), Positives = 136/216 (62%), Gaps = 15/216 (6%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V    +   L IAP   +MVT + + ++V  +LR+ +G+  VPPNLV+  +AL ++ ++M
Sbjct: 8   VALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIM 67

Query: 100 SPTLDRSIEMGIQPL---MNNQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMA 152
           +P +  SI   +Q      + Q++ T  +  +A+    P   F+ ++TR++D   F+  A
Sbjct: 68  AP-VGMSIRDALQARHFDASGQLS-TADVGALADAALPPIKDFLVSHTRQRDREFFVRTA 125

Query: 153 HS---SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
            S    +R   I  +D +   +L+PSF ++EL ++F+IGF+I + F+++D++VA I++A+
Sbjct: 126 TSVWPKNRADGIRDDDLL---VLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANILLAL 182

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GM M+ PT+IS+PFK++ FV +DGWSLLV  LV S+
Sbjct: 183 GMQMISPTTISVPFKLLLFVALDGWSLLVHGLVLSY 218


>gi|38639349|gb|AAR25815.1| BcscR [Burkholderia multivorans E243]
          Length = 224

 Score =  142 bits (357), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 76/217 (35%), Positives = 132/217 (60%), Gaps = 17/217 (7%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V    +   L IAP   +MVT + + ++V  +LR+ +G+  VPPNLV+  +AL ++ ++M
Sbjct: 8   VALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIM 67

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAE----------PFWVFMRNNTREKDLSLFM 149
           +P     + M I+  +  +  +T+     A+          P   F+ ++TR++D   F+
Sbjct: 68  AP-----VGMSIRDALQARHFDTSGQLSTADVGVLADAALPPIKDFLVSHTRQRDRDFFV 122

Query: 150 DMAHSS-HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
             A S   +N      DH +  +L+PSF ++EL ++F+IGF+I + F+++D++V  I++A
Sbjct: 123 RTATSVWPKNRADAIRDH-DLLVLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVPNILLA 181

Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +GM M+ PT+IS+PFK++ FVL+DGWSLLV  LV S+
Sbjct: 182 LGMQMISPTTISVPFKLLLFVLLDGWSLLVHGLVLSY 218


>gi|119953074|ref|YP_945283.1| flagellar biosynthesis protein FliP [Borrelia turicatae 91E135]
 gi|119861845|gb|AAX17613.1| flagellar biosynthetic protein FliP [Borrelia turicatae 91E135]
          Length = 256

 Score =  141 bits (356), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 79/199 (39%), Positives = 123/199 (61%), Gaps = 9/199 (4%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           +P  L+++T F R  IV   +R  + +   PPN VI+ LALF+T + M PT +   +   
Sbjct: 63  SPAFLVLMTSFLRIAIVLDFIRRALSLQQSPPNQVIMGLALFLTLFTMWPTFNIIYKEAY 122

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMR---NNTREKDLSLFMDMAHSSHRNTDITKN-DHI 167
            PL +++I       R   P   FM    +N++ +++ LFM ++     N    KN   +
Sbjct: 123 LPLQDSKIGFNEFYDRGIAPLRNFMYKQMSNSKHEEIRLFMSIS-----NYPRPKNFSEV 177

Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227
              +LI SF++ EL+ +F++G LI LPF++ID+IVA ++MAMGM+MLPP  ISLPFK++ 
Sbjct: 178 PTHVLIASFVLHELKVAFKMGILIFLPFIVIDIIVAAVLMAMGMIMLPPVMISLPFKLML 237

Query: 228 FVLIDGWSLLVENLVKSFI 246
           FV++DGW+L+   LVKSF+
Sbjct: 238 FVMVDGWTLITSGLVKSFM 256


>gi|320107033|ref|YP_004182623.1| flagellar biosynthetic protein FliP [Terriglobus saanensis SP1PR4]
 gi|319925554|gb|ADV82629.1| flagellar biosynthetic protein FliP [Terriglobus saanensis SP1PR4]
          Length = 271

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 71/193 (36%), Positives = 118/193 (61%), Gaps = 4/193 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +++ +T   R ++VF  LR  +G  + P N V+++L L MT++++ P + +  +  I 
Sbjct: 83  PAIILAMTPMVRLLVVFHFLRQALGTQTAPSNQVLMALGLMMTWFLIQPVVVQIEQQAIA 142

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P     IT    + R + P   ++    REKDL+LF     S    T +     I  RI+
Sbjct: 143 PYRAETITLEECMDRTSVPIKQYLLKYAREKDLALFASAGMSIRPQTRL----DIPLRIV 198

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           IP++++SEL+  F+IG ++ LPFL+ID++VA+I  ++GM+ LPP  IS P K++ FV++D
Sbjct: 199 IPAYILSELKAGFQIGAVLFLPFLLIDLVVASITTSVGMLQLPPVVISTPIKILLFVMVD 258

Query: 233 GWSLLVENLVKSF 245
           GW+LL  +L+KSF
Sbjct: 259 GWNLLAGSLLKSF 271


>gi|39545585|gb|AAR27892.1| AscR [Aeromonas hydrophila]
          Length = 217

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 128/206 (62%), Gaps = 12/206 (5%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
            +L++ P + +M T F +  +VFS+LR  +G+  +PPN+ +  LA+ ++ YVM+P     
Sbjct: 15  ALLALLPFIAVMATSFVKLAVVFSLLRNALGVQQIPPNMAMYGLAIILSIYVMAP----- 69

Query: 107 IEMGIQP-LMNNQIT--ETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +    Q  L  N+++  ++ ++++  +    P+  F++   + ++ + F+D       + 
Sbjct: 70  VGFATQDYLRQNEVSLAKSESVEKFLDEGMAPYRTFLKKQIKPREHAFFIDSTKQLWPSE 129

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
              + +     IL+P+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P +I
Sbjct: 130 YADRLESDSLLILLPAFTVSELSRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTI 189

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW+ L   LV S+
Sbjct: 190 SLPFKLLLFVLLDGWARLTHGLVISY 215


>gi|157373224|ref|YP_001471824.1| flagellar biosynthesis protein FliP [Shewanella sediminis HAW-EB3]
 gi|157315598|gb|ABV34696.1| Triacylglycerol lipase [Shewanella sediminis HAW-EB3]
          Length = 242

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 86/202 (42%), Positives = 124/202 (61%), Gaps = 4/202 (1%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            + T+LS  P LL+M+T F R I+V +ILR  +G+   PPN V++ +AL +T +VM P  
Sbjct: 44  ALMTVLSFLPALLMMLTSFTRIIVVLAILRQALGLQQSPPNKVLLGIALVLTLFVMRPVG 103

Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163
               +    P     I    A+     P   FM   TRE DL   + +A      T    
Sbjct: 104 QVMYDEAYLPYDQGLIELPEAVNIGVVPLRKFMLAQTRETDLEQMLKIADEPVTLT---- 159

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
            D I + +L+P+F++SEL+ +F+IGFL+ LPFL+ID++VA+++M+MGMMML P  ISLPF
Sbjct: 160 ADEIPFFVLMPAFVLSELKTAFQIGFLLFLPFLVIDLVVASVLMSMGMMMLSPLIISLPF 219

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K++ FVL+DGWS+ V  LV SF
Sbjct: 220 KLMVFVLVDGWSMTVSTLVASF 241


>gi|253988529|ref|YP_003039885.1| type III secretion system protein [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211637889|emb|CAR66518.1| type iii secretion component protein sctr [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253779979|emb|CAQ83140.1| type iii secretion component protein sctr [Photorhabdus
           asymbiotica]
          Length = 217

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 125/206 (60%), Gaps = 12/206 (5%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
            +LS+ P + +M T F +  +VFS+LR  +G+  +PPN+ +  LA+ +T YVM+P     
Sbjct: 15  ALLSLLPFIAVMATSFLKLAVVFSLLRNALGVQQIPPNMAMYGLAIILTIYVMAP----- 69

Query: 107 IEMGIQP-LMNNQITETTA------IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +    Q  L  N+++ + A      ++    P+  F++ + +  + + F+D       + 
Sbjct: 70  VGFATQDYLRQNEVSFSNAQSVEKFLEEGMAPYRNFLKQHIKSSERTFFIDSTRQIWPSQ 129

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
              + +     IL+P+F +SEL R+FEIGFL+ LPF+ ID+I++ I++AMGMMM+ P +I
Sbjct: 130 YANRLEPDSLLILLPAFTVSELTRAFEIGFLLYLPFIAIDLIISNILLAMGMMMVSPMTI 189

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW+ L   LV S+
Sbjct: 190 SLPFKLLLFVLLDGWTRLTHGLVISY 215


>gi|83646012|ref|YP_434447.1| type III secretion system protein [Hahella chejuensis KCTC 2396]
 gi|83634055|gb|ABC30022.1| Type III secretory pathway, component EscR [Hahella chejuensis KCTC
           2396]
          Length = 215

 Score =  141 bits (355), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 76/207 (36%), Positives = 126/207 (60%), Gaps = 5/207 (2%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
           T G+  I ++ P   +M T F +  +V  +LR  +G+  +PPN+ +  LA+ +T Y+M+P
Sbjct: 10  TLGLAGI-ALIPFFAVMATSFVKIAVVLGLLRNALGIQQIPPNMALYGLAIILTAYIMAP 68

Query: 102 T-LDRSIEMGIQPLMNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
             +    E+  +P+      E  A+   A +P+  F++ +  E + + F + A +     
Sbjct: 69  VGISAYNELSTKPISLENTQELKALMDTASQPYKEFLQRHGSEDEQTFFHETA-AEIWPE 127

Query: 160 DITKN-DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
           D+ K  +   + +LIP+F  SEL  +FEIGFLI LPFL ID+I++ I++AMGMMM+ P +
Sbjct: 128 DVAKGLEKDSFFVLIPAFTASELTSAFEIGFLIYLPFLAIDLIISNILLAMGMMMVSPMT 187

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ISLPFK++ FVL+DGW+ L+  LV ++
Sbjct: 188 ISLPFKLLLFVLMDGWTRLIHGLVLAY 214


>gi|332159962|ref|YP_004296539.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325664192|gb|ADZ40836.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330862413|emb|CBX72572.1| virulence protein yscR [Yersinia enterocolitica W22703]
          Length = 216

 Score =  141 bits (355), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 80/195 (41%), Positives = 122/195 (62%), Gaps = 6/195 (3%)

Query: 56  LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRSIEMGIQPL 114
           ++M T F +  IVFS+LR  +G+  VPPN+ I  LAL +T ++M+P  LD    +  +PL
Sbjct: 24  MVMGTSFLKLSIVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVHARLQDEPL 83

Query: 115 MNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHSSH--RNTDITKNDHIEYRI 171
            N+       I   A EP+  F++ NT    +  F D+  +    R  D  K + +   I
Sbjct: 84  PNDLGALLYHIDEHALEPYRDFLQRNTDAAQVHFFNDIVQTKWPVRYRDTIKPNSL--LI 141

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           L+P+F +S+L  +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK++ F+LI
Sbjct: 142 LMPAFTLSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMVSPITISLPFKLLIFILI 201

Query: 232 DGWSLLVENLVKSFI 246
           DGW LL+  LV S++
Sbjct: 202 DGWGLLLGQLVGSYL 216


>gi|46398252|gb|AAS91806.1| AcrR [Aeromonas hydrophila]
          Length = 217

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 78/207 (37%), Positives = 128/207 (61%), Gaps = 14/207 (6%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP----T 102
            +L++ P + +M T F +  +VFS+LR  +G+  +PPN+ +  LA+ ++ YVM+P    T
Sbjct: 15  ALLALLPFIAVMATSFVKMAVVFSLLRNALGVQQIPPNMAMYGLAIILSIYVMAPVGFAT 74

Query: 103 LD--RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS--SHRN 158
            D  R  E+    L  ++  E    + +A P+  F++   + ++ + F+D        + 
Sbjct: 75  QDYLRQNEVS---LAKSESVEKFLDEGIA-PYRAFLKKQIKPREHAFFIDSTKQLWPSKY 130

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
            D  + D +   IL+P+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P +
Sbjct: 131 ADRLEPDSL--LILLPAFTVSELSRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMT 188

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ISLPFK++ FVL+DGW+ L   LV S+
Sbjct: 189 ISLPFKLLLFVLLDGWARLTHGLVISY 215


>gi|218892351|ref|YP_002441218.1| type III secretion system protein [Pseudomonas aeruginosa LESB58]
 gi|218772577|emb|CAW28360.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           LESB58]
          Length = 217

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 71/196 (36%), Positives = 122/196 (62%), Gaps = 12/196 (6%)

Query: 57  IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
           +M T F +  +VFS+LR  +G+  +PPN+ +  LA+ ++ YVM+P     +    +  + 
Sbjct: 25  VMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAP-----VGFATRDYLR 79

Query: 117 NQ---ITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169
           N    ++++ +++R  +    P+  F++   +E++ + FM+       +    + D    
Sbjct: 80  NHDVSLSDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSL 139

Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
            IL+P+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P +ISLPFK++ FV
Sbjct: 140 LILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISLPFKLLLFV 199

Query: 230 LIDGWSLLVENLVKSF 245
           L+DGW+ L   LV S+
Sbjct: 200 LLDGWARLTHGLVISY 215


>gi|115379117|ref|ZP_01466241.1| type III secretion apparatus protein, YscR/HrcR family [Stigmatella
           aurantiaca DW4/3-1]
 gi|115363900|gb|EAU63011.1| type III secretion apparatus protein, YscR/HrcR family [Stigmatella
           aurantiaca DW4/3-1]
          Length = 241

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 141/247 (57%), Gaps = 9/247 (3%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           M R+C  A++++         +L         L++         +  +LS+ P  ++M+T
Sbjct: 1   MTRFCLAAVWVLPGWAAAGGETLAQASQAGNPLTM-------MAVLAVLSLLPFAVVMLT 53

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F +  +V S+ R+ MG    PP +V+  LA  ++ ++MSP + R  E+G +   + +  
Sbjct: 54  SFSKIAVVLSLARSAMGTQQAPPTVVLTGLAAVLSAHIMSPVMARMYEVGREAARDAESG 113

Query: 121 ET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
                A++R AEP   F+  +   ++ S F+++A       + T+    +  +++P+F+I
Sbjct: 114 AQILAAVERTAEPLRAFLVKHGSAEERSRFVELARELRPPEEATQVQEGDLFVVVPAFVI 173

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           +EL+ +F++GFL+ LPFL++DM++A I++A+GM  L P+ +SLPFK++ FV +DGW LL 
Sbjct: 174 TELKEAFQMGFLLFLPFLVLDMVIANILLALGMQSLSPSQVSLPFKILLFVTVDGWPLLA 233

Query: 239 ENLVKSF 245
           + L++ +
Sbjct: 234 QGLIQGY 240


>gi|16760492|ref|NP_456109.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29141748|ref|NP_805090.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213416630|ref|ZP_03349774.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213426016|ref|ZP_03358766.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213581367|ref|ZP_03363193.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213647287|ref|ZP_03377340.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213854184|ref|ZP_03382716.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289827206|ref|ZP_06545929.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25316659|pir||AI0696 probable type III secretion protein yscR [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16502788|emb|CAD01946.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29137376|gb|AAO68939.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 215

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 76/208 (36%), Positives = 125/208 (60%), Gaps = 11/208 (5%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
           GI  +LSI P++++M T F +  +VFSILR  +G+  VPPN+ +   AL ++ ++M PTL
Sbjct: 12  GILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTL 71

Query: 104 ----DR--SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
               +R   +++   P   ++        +   P+  F++ N+ EK+ + F ++   +  
Sbjct: 72  LAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLIKRTWP 126

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
                K       ILIP+F +S+L ++F IG LI LPFL ID++++ I++AMGMMM+ P 
Sbjct: 127 EDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPM 186

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +ISLPFK++ F+L  GW L +  LV+SF
Sbjct: 187 TISLPFKLLIFLLAGGWDLTLAQLVQSF 214


>gi|171320712|ref|ZP_02909725.1| flagellar biosynthetic protein FliP [Burkholderia ambifaria MEX-5]
 gi|171094039|gb|EDT39137.1| flagellar biosynthetic protein FliP [Burkholderia ambifaria MEX-5]
          Length = 259

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 81/214 (37%), Positives = 136/214 (63%), Gaps = 4/214 (1%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D   ++  VR   + T+LSI P L++ +T F R +IV S++R   GM   PP  V+ISLA
Sbjct: 49  DRDGASEAVRIAVLLTLLSIGPALVVSMTAFIRIVIVLSMIRHAFGMPETPPTPVLISLA 108

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           LF+T +VM P  D      +QP M+ +I    A++  A P   FM    R+ +L L  ++
Sbjct: 109 LFLTAFVMMPAFDTLHHDALQPFMDGRIAVDRALELGAAPLRDFMLRQVRDDELRLMYEL 168

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           +     ++     D +    L P+F+++ELR +F+IGF+++LPFL++D++V+T+++++GM
Sbjct: 169 SRKPLPDS----ADEVGLLQLTPAFILNELRVAFQIGFVVLLPFLLLDLVVSTVLLSLGM 224

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +M+PP++ISLP K++ FVLIDGW L++  ++  F
Sbjct: 225 LMVPPSTISLPLKILMFVLIDGWGLVMRGVLGGF 258


>gi|312883878|ref|ZP_07743595.1| type III secretion system protein [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368336|gb|EFP95871.1| type III secretion system protein [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 216

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 72/201 (35%), Positives = 125/201 (62%), Gaps = 2/201 (0%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
            +L++ P + +M T F +  +VFS+LR  +G+  +PPN+ +  LA+ ++ ++M+P    +
Sbjct: 15  ALLALVPFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMAMYGLAIILSIFIMAPVGFET 74

Query: 107 IEMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
            +   Q  ++ +  E+    I    +P+  F++ + RE +   F D A +      + + 
Sbjct: 75  YDYVKQNEISLEDPESIEGVIDNGLQPYREFLKKHIRETESVFFTDAARALWPKKYVERL 134

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           +     +L+P+F +SEL R+FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK
Sbjct: 135 ETDSLLLLLPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISLPFK 194

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW+ L   LV S+
Sbjct: 195 LLLFVLLDGWTKLTHGLVLSY 215


>gi|238764052|ref|ZP_04625007.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia
           kristensenii ATCC 33638]
 gi|238697723|gb|EEP90485.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia
           kristensenii ATCC 33638]
          Length = 216

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/194 (40%), Positives = 122/194 (62%), Gaps = 6/194 (3%)

Query: 57  IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRSIEMGIQPLM 115
           +M T F +  IVFS+LR  +G+  VPPN+ I  LAL +T ++M+P  LD    +  +PL 
Sbjct: 25  VMGTSFLKLSIVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVHARLQDEPLP 84

Query: 116 NNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHSS--HRNTDITKNDHIEYRIL 172
           N+       I   A  P+  F++ NT  + ++ F D+  +    R  D  K + +   IL
Sbjct: 85  NDIGALLHHIDESALGPYRDFLQRNTDAEQVNFFNDIVKTKWPERYRDTIKPNSL--LIL 142

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           +P+F +S+L  +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK++ F+LID
Sbjct: 143 MPAFTLSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMVSPITISLPFKLLIFILID 202

Query: 233 GWSLLVENLVKSFI 246
           GW LL+  LV S++
Sbjct: 203 GWGLLLGQLVGSYL 216


>gi|254517017|ref|ZP_05129075.1| flagellar biosynthetic protein FliP [gamma proteobacterium NOR5-3]
 gi|219674522|gb|EED30890.1| flagellar biosynthetic protein FliP [gamma proteobacterium NOR5-3]
          Length = 247

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/193 (45%), Positives = 123/193 (63%), Gaps = 4/193 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P  LI +T F R +IV +ILR  +G    P N +I+ L+LF++ ++M+P  + +    +Q
Sbjct: 57  PAALITMTSFTRILIVLAILRQALGTAQTPSNQIILGLSLFLSLFIMAPVFEVAWSTALQ 116

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P MN  +  T A+     PF  FM   TRE DL LF ++      NT     D +   +L
Sbjct: 117 PYMNETVGFTEALDAAKIPFREFMFGQTRETDLLLFAELGGYGAFNTP----DDVPMVVL 172

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           +PSF+ SEL+ +F+IGFL+ +PFLIID++VA ++M+MGMMML P  ISLPFK++ FVLID
Sbjct: 173 LPSFLTSELKTAFQIGFLMFVPFLIIDLVVAAVLMSMGMMMLSPMLISLPFKLMLFVLID 232

Query: 233 GWSLLVENLVKSF 245
           GWSL+   LV SF
Sbjct: 233 GWSLVAATLVTSF 245


>gi|307947532|ref|ZP_07662865.1| type III secretion apparatus protein, YscR/HrcR family [Roseibium
           sp. TrichSKD4]
 gi|307769350|gb|EFO28578.1| type III secretion apparatus protein, YscR/HrcR family [Roseibium
           sp. TrichSKD4]
          Length = 217

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 74/213 (34%), Positives = 126/213 (59%), Gaps = 11/213 (5%)

Query: 41  RTFGIFTI---LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFY 97
            +FG+  +   ++  PI+ + VT F +  +V  I+R   G+ ++PPN+V+  LA+ ++ Y
Sbjct: 7   NSFGVIALVFFMAFLPIIAVTVTAFAKIAVVLMIVRNATGLQNLPPNVVMYGLAIILSAY 66

Query: 98  VMSPTLDRSIEMGIQ--PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH-- 153
           +  P +  S E   Q  P +        A Q  + P   F++ +  EK  + F+      
Sbjct: 67  IAFPVVADSFERVQQTVPELETAQDWIKAGQEGSAPLKEFLKKHADEKQTAFFLASTRKI 126

Query: 154 -SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
                  D T  D     IL+PSF++SEL ++FEIGFL+ LPF+ ID+IV T+++A+GMM
Sbjct: 127 WGDKYAQDATPED---LAILVPSFLLSELTKAFEIGFLLFLPFIAIDIIVTTVLIALGMM 183

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+PP++IS+PFK++ FV ++GWS +V+ L+ ++
Sbjct: 184 MVPPSTISIPFKLMLFVFVEGWSKIVQGLLLTY 216


>gi|325474550|gb|EGC77736.1| flagellar biosynthetic protein fliP [Treponema denticola F0402]
          Length = 259

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 77/200 (38%), Positives = 118/200 (59%), Gaps = 2/200 (1%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T++SIAP LL+++T F R  IV   ++  + +  VPP  V+  +A F+T ++M PT  + 
Sbjct: 62  TLISIAPSLLLLMTSFLRLSIVLDFVKRALSLQQVPPTQVLNGIAFFLTLFIMWPTFTQI 121

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
                +P+   QI    A +   +P   FM    ++    +   MA S     D   +  
Sbjct: 122 YNNAYKPMSEGQIGIEEAYREAEKPMRYFMYKQMQKNPAHIRTFMAMSKLPKPDTLAD-- 179

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
           +   ILI +F++ EL  +F+IG  + LPF+IIDMIVA+I+M+MGM+MLPP  IS+PFK+I
Sbjct: 180 VPTHILIAAFILHELTIAFQIGIFLYLPFIIIDMIVASILMSMGMIMLPPVQISMPFKLI 239

Query: 227 FFVLIDGWSLLVENLVKSFI 246
            FV++DGW LL   L +SF+
Sbjct: 240 LFVMVDGWGLLFGKLFESFL 259


>gi|42528260|ref|NP_973358.1| flagellar biosynthesis protein FliP [Treponema denticola ATCC
           35405]
 gi|7387675|sp|Q9X5A6|FLIP_TREDE RecName: Full=Flagellar biosynthetic protein fliP
 gi|4426951|gb|AAD20625.1| flagellar export protein FliP [Treponema denticola]
 gi|41819530|gb|AAS13277.1| flagellar biosynthesis protein FliP [Treponema denticola ATCC
           35405]
          Length = 271

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 77/200 (38%), Positives = 118/200 (59%), Gaps = 2/200 (1%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T++SIAP LL+++T F R  IV   ++  + +  VPP  V+  +A F+T ++M PT  + 
Sbjct: 74  TLISIAPSLLLLMTSFLRLSIVLDFVKRALSLQQVPPTQVLNGIAFFLTLFIMWPTFTQI 133

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
                +P+   QI    A +   +P   FM    ++    +   MA S     D   +  
Sbjct: 134 YNNAYKPMSEGQIGIEEAYREAEKPMRYFMYKQMQKNPTHIRTFMAMSKLPKPDTLAD-- 191

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
           +   ILI +F++ EL  +F+IG  + LPF+IIDMIVA+I+M+MGM+MLPP  IS+PFK+I
Sbjct: 192 VPTHILIAAFILHELTIAFQIGIFLYLPFIIIDMIVASILMSMGMIMLPPVQISMPFKLI 251

Query: 227 FFVLIDGWSLLVENLVKSFI 246
            FV++DGW LL   L +SF+
Sbjct: 252 LFVMVDGWGLLFGKLFESFL 271


>gi|145301463|ref|YP_001144302.1| type III secretion system protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|38201229|emb|CAD56764.1| ascR protein [Aeromonas salmonicida subsp. salmonicida]
 gi|66947958|emb|CAE83095.1| AscR protein [Aeromonas salmonicida subsp. salmonicida]
 gi|142856345|gb|ABO92554.1| AscR protein [Aeromonas salmonicida subsp. salmonicida A449]
 gi|145284338|gb|ABP51919.1| AscR [Aeromonas veronii bv. sobria]
          Length = 217

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/207 (37%), Positives = 128/207 (61%), Gaps = 14/207 (6%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP----T 102
            +L++ P + +M T F +  +VFS+LR  +G+  +PPN+ +  LA+ ++ YVM+P    T
Sbjct: 15  ALLALLPFIAVMATSFVKLAVVFSLLRNALGVQQIPPNMAMYGLAIILSIYVMAPVGFAT 74

Query: 103 LD--RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS--SHRN 158
            D  R  E+    L  ++  E    + +A P+  F++   + ++ + F+D        + 
Sbjct: 75  QDYLRQNEVS---LAKSESVEKFLDEGIA-PYRDFLKKQIKPREHAFFIDSTKQLWPSKY 130

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
            D  + D +   IL+P+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P +
Sbjct: 131 ADRLEPDSL--LILLPAFTVSELSRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMT 188

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ISLPFK++ FVL+DGW+ L   LV S+
Sbjct: 189 ISLPFKLLLFVLLDGWARLTHGLVISY 215


>gi|319787090|ref|YP_004146565.1| flagellar biosynthetic protein FliP [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465602|gb|ADV27334.1| flagellar biosynthetic protein FliP [Pseudoxanthomonas suwonensis
           11-1]
          Length = 257

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/207 (40%), Positives = 129/207 (62%), Gaps = 6/207 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++T  + T +++ P LL+++TCF R IIV ++LR  MG G  P N +++ L+LF+T  +M
Sbjct: 53  LQTLLLMTGITLLPSLLLVMTCFTRIIIVMALLRQAMGTGQTPSNQILVGLSLFLTAMIM 112

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-HSSHRN 158
            P   ++ + G  P +N +I   +A      P   FM    RE DL  F  +A H ++ +
Sbjct: 113 MPVWQKAWDAGFAPYLNGEIDFRSAWDLGTAPLRAFMLAQVRETDLMTFAGLAGHDTYAS 172

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
            +      + + +L  SF+ SEL+ +FEIGFLI +PF+IID++VA+++M+MGMMML P  
Sbjct: 173 PE-----AVPFPVLAASFVTSELKTAFEIGFLIFIPFVIIDLVVASVLMSMGMMMLSPML 227

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IS PFK++ FVL+DGW L V  L  SF
Sbjct: 228 ISAPFKILLFVLVDGWVLTVGTLAASF 254


>gi|148976243|ref|ZP_01812967.1| putative flagellar assembly protein [Vibrionales bacterium SWAT-3]
 gi|145964337|gb|EDK29592.1| putative flagellar assembly protein [Vibrionales bacterium SWAT-3]
          Length = 246

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/201 (37%), Positives = 125/201 (62%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T+LS  P  +IM T F R +IV +ILR  +G+   PPN V++ +AL  T  +M P   
Sbjct: 46  LMTLLSFVPAFVIMCTSFTRIVIVLAILRQALGLQQTPPNQVLVGIALIFTLLIMRPVWT 105

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +  +    P   +++T   A+    +P   +M + T+ K L     +A      T I  +
Sbjct: 106 KIYDTAYIPYSKDEVTLMEALATAEKPLRRYMLDQTQRKALEQVSKIAG----ETAIESD 161

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
             I + +L+P++++SEL+ +F+IGF++ LPFL+ID++VA+++M+MGMMML P  +SLPFK
Sbjct: 162 QDIPFLVLLPAYLLSELKAAFQIGFMLFLPFLVIDLVVASVLMSMGMMMLSPLIVSLPFK 221

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FV++DGW LL+ +L  SF
Sbjct: 222 LLVFVIVDGWGLLMGSLANSF 242


>gi|9663090|emb|CAC01108.1| FliP flagellar protein [Helicobacter pylori]
          Length = 160

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 66/147 (44%), Positives = 101/147 (68%), Gaps = 4/147 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P L++++T F R I+VFS LRT +G    PP  +++SL+L +TF++M P+L ++ + GI+
Sbjct: 18  PSLILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIK 77

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P M+ +I+ T A ++ A PF  FM  NTREKDL+LF  + +  +  T     D +   +L
Sbjct: 78  PYMDKKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKTP----DEVSLSVL 133

Query: 173 IPSFMISELRRSFEIGFLIILPFLIID 199
           IP+FMISEL+ +F+IGFL+ LPFL+ID
Sbjct: 134 IPAFMISELKTAFQIGFLLYLPFLVID 160


>gi|167590548|ref|ZP_02382936.1| Yop virulence translocation R [Burkholderia ubonensis Bu]
          Length = 222

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/216 (34%), Positives = 136/216 (62%), Gaps = 15/216 (6%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V    +   L IAP   +MVT + + ++V  +LR+ +G+  VPPNLV+  +AL ++ ++M
Sbjct: 8   VALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIM 67

Query: 100 SPTLDRSIEMGIQPL---MNNQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMA 152
           +P +  SI   +Q      + Q++ T  +  +A+    P   F+ ++TR++D   F+  A
Sbjct: 68  AP-VGMSIRDALQQRHFDASGQLS-TADVGALADAALPPIKDFLVSHTRQRDREFFVRTA 125

Query: 153 HS---SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
            S    +R   +  +D +   +L+PSF ++EL ++F+IGF+I + F+++D++VA I++A+
Sbjct: 126 TSVWPKNRAEGVKDDDLL---VLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANILLAL 182

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GM M+ PT+IS+PFK++ FV +DGW++LV  LV S+
Sbjct: 183 GMQMISPTTISVPFKLLLFVALDGWAMLVHGLVLSY 218


>gi|15639705|ref|NP_219155.1| flagellar biosynthesis protein FliP [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189025943|ref|YP_001933715.1| flagellar biosynthesis protein FliP [Treponema pallidum subsp.
           pallidum SS14]
 gi|2494564|sp|P74930|FLIP_TREPA RecName: Full=Flagellar biosynthetic protein fliP
 gi|973197|gb|AAB00546.1| FliP [Treponema pallidum]
 gi|3323020|gb|AAC65684.1| flagellar biosynthetic protein (fliP) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189018518|gb|ACD71136.1| flagellar biosynthetic protein [Treponema pallidum subsp. pallidum
           SS14]
 gi|291060082|gb|ADD72817.1| flagellar biosynthetic protein FliP [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 271

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/195 (38%), Positives = 116/195 (59%), Gaps = 2/195 (1%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +L+++T F R  IV   ++  + +  VPP  V+  +ALF+  ++M P          
Sbjct: 79  APSILLLMTAFLRLSIVLDFIKRALSLQQVPPTQVLHGIALFLALFIMWPVFTEIYAKSF 138

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           +PL + Q+   TA      P  VFM         S+ + M+ +     D T  D   Y +
Sbjct: 139 KPLTDGQVDIQTAYTEAERPLRVFMYRQMAHDPSSVRLCMSMAKLPKPD-TLADVPTY-V 196

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           LIP+F++ EL  +F+IG  + LPF+I+DM+VA+I+M+MGM+MLPP  ISLPFK++ FVL+
Sbjct: 197 LIPAFILHELTVAFQIGIFLYLPFIIVDMVVASILMSMGMIMLPPVQISLPFKLVLFVLV 256

Query: 232 DGWSLLVENLVKSFI 246
           DGW+LL++ L  SF+
Sbjct: 257 DGWNLLIDRLFHSFL 271


>gi|237678817|emb|CAQ57544.1| RHCR protein [Bradyrhizobium elkanii]
          Length = 221

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/195 (38%), Positives = 114/195 (58%), Gaps = 8/195 (4%)

Query: 56  LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115
           ++  T F +  +V  ++R  +G  S+PPN+V+   AL +T ++ +P  +++      P +
Sbjct: 25  VVTTTAFIKVSVVLFLVRNALGTQSIPPNIVLYGAALILTVFISAPVFEQTYNRLTDPQL 84

Query: 116 NNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH---SSHRNTDITKNDHIEYR 170
             Q  +   TA +   EP    ++  T E+    F+  A    S       T +D +   
Sbjct: 85  RYQTFDDWVTAAKEGQEPLRAHLKKFTNEEQRRFFLSSAEHVWSEEMRGSATADDFV--- 141

Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230
           IL+PSF+ISEL+R FEIGFL+ LPF+ ID+IV TI+MAMGM M+ PT IS+PFK+  FV 
Sbjct: 142 ILVPSFLISELKRGFEIGFLLYLPFITIDLIVTTILMAMGMSMVSPTVISVPFKLFLFVT 201

Query: 231 IDGWSLLVENLVKSF 245
           IDGWS L+  LV S+
Sbjct: 202 IDGWSRLMHGLVLSY 216


>gi|171915734|ref|ZP_02931204.1| type III secretion system protein [Verrucomicrobium spinosum DSM
           4136]
          Length = 222

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 73/201 (36%), Positives = 130/201 (64%), Gaps = 2/201 (0%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           ++L++ P L +MVT + + ++V S++R  +G+  +PPN+V+  +A+ +T Y+M+P   ++
Sbjct: 17  SVLALIPFLAVMVTSYVKLVVVLSLVRNALGVQQIPPNMVLNGIAVILTIYIMAPIGQQT 76

Query: 107 -IEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              +  + L N  +     I  R + P   F+  +T +++ + F+D A     +    K 
Sbjct: 77  FANLEKEDLKNLSVESIKGIMDRSSTPIRKFLAYHTADREKAFFLDTARRLWGDKAQVKI 136

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D  ++ +LIP+F +SEL  +F+IGFL+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK
Sbjct: 137 DKDDFFVLIPAFTVSELTAAFQIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISLPFK 196

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW+ L+  LV ++
Sbjct: 197 LLLFVLVDGWARLIHGLVITY 217


>gi|116328498|ref|YP_798218.1| flagellar biosynthesis protein FliP [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116331228|ref|YP_800946.1| flagellar biosynthesis protein FliP [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116121242|gb|ABJ79285.1| Endoflagellar biosynthesis pathway protein [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116124917|gb|ABJ76188.1| Endoflagellar biosynthesis pathway protein [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 260

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 145/221 (65%), Gaps = 10/221 (4%)

Query: 28  NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87
           N P + S+S  ++    + TILS+AP +++ +T F + +IV   +R  + + ++PPN V+
Sbjct: 46  NSPRETSLSLMVL---FLVTILSLAPAIVMSLTSFTKIVIVLDFVRRALSIQNLPPNQVM 102

Query: 88  ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN---TREKD 144
           + LALFMTF++M+PTL+   E  + P +  +I   +  ++   P   FM      +  KD
Sbjct: 103 MGLALFMTFFIMAPTLNTVNERALAPYLEGKIDTNSFFEKGMVPIREFMMRQIGTSGAKD 162

Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
           ++LF+ +     +  ++   D +   +LIP+FM+SE++++F IG +I +PF++ID++VA+
Sbjct: 163 VALFLKIG----KVEEVESFDDVPSYVLIPAFMLSEIKKAFWIGIIIFIPFIVIDLVVAS 218

Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            +++MG+MMLPP  +SLPFK+I FVL+DGW+L+V  LV+S+
Sbjct: 219 ALLSMGLMMLPPVMVSLPFKLILFVLVDGWNLIVYELVRSY 259


>gi|238787477|ref|ZP_04631275.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia
           frederiksenii ATCC 33641]
 gi|238724264|gb|EEQ15906.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia
           frederiksenii ATCC 33641]
          Length = 216

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 79/195 (40%), Positives = 121/195 (62%), Gaps = 6/195 (3%)

Query: 56  LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRSIEMGIQPL 114
           ++M T F +  IVFS+LR  +G+  VPPN+ I  LAL +T ++M+P  LD    +  +PL
Sbjct: 24  MVMGTSFLKLSIVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVHARLQDEPL 83

Query: 115 MNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHSS--HRNTDITKNDHIEYRI 171
            N        I   A  P+  F++ NT  +    F D+  +    R  D  K++ +   I
Sbjct: 84  PNEIGPLLHHIDEHALGPYRDFLQRNTDAEQTHFFTDIVQTKWPERYRDTIKSNSL--LI 141

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           L+P+F +S+L  +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK++ F+LI
Sbjct: 142 LMPAFTLSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMVSPITISLPFKLLIFILI 201

Query: 232 DGWSLLVENLVKSFI 246
           DGW LL+  LV S++
Sbjct: 202 DGWGLLLGQLVGSYL 216


>gi|51598535|ref|YP_072723.1| flagellar biosynthesis protein FliP [Borrelia garinii PBi]
 gi|51573106|gb|AAU07131.1| flagellar biosynthesis protein [Borrelia garinii PBi]
          Length = 254

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 74/199 (37%), Positives = 123/199 (61%), Gaps = 9/199 (4%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           +P  L+++T F R  IV   +R  + +   PP  +++ LALF+T + M PT +   +   
Sbjct: 61  SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNVIYKQAY 120

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMR---NNTREKDLSLFMDMAHSSHRNTDITKN-DHI 167
            PL  ++I       +   P  +FM    ++ R +++ LFM ++     N D  KN   +
Sbjct: 121 LPLKESKINFDEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSIS-----NYDRPKNFSEV 175

Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227
              +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP  ISLPFK+I 
Sbjct: 176 PTHVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLIL 235

Query: 228 FVLIDGWSLLVENLVKSFI 246
           FV++DGW+L+   L+KSF+
Sbjct: 236 FVMVDGWTLITSGLIKSFM 254


>gi|170766856|ref|ZP_02901309.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           albertii TW07627]
 gi|170124294|gb|EDS93225.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           albertii TW07627]
 gi|315617513|gb|EFU98119.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli 3431]
          Length = 217

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/201 (37%), Positives = 127/201 (63%), Gaps = 12/201 (5%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           +F +LS+ PI +++ T F +  IV  IL+  +G+  VPPN+ + S++L +T ++MSP + 
Sbjct: 17  VFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPII- 75

Query: 105 RSIEMGIQPLMNNQITETTA--IQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRN 158
             I   I      QI+ T +   Q+V E    P+ VF+  NT +++++ F ++A     N
Sbjct: 76  LQINDNIS---QEQISYTDSDFFQKVDEKILSPYRVFLEKNTDKENVAFFENVAQKKLGN 132

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
             I K D +   IL+P+F + +L  +F+IGFL+ LPF+ ID+I++ I++A+GMMM+ P +
Sbjct: 133 ETILKKDSL--FILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVT 190

Query: 219 ISLPFKVIFFVLIDGWSLLVE 239
           IS+PFK++ F+L+ GW  L E
Sbjct: 191 ISIPFKILLFILVGGWQKLFE 211


>gi|304311653|ref|YP_003811251.1| Type III secretory pathway protein [gamma proteobacterium HdN1]
 gi|301797386|emb|CBL45606.1| Type III secretory pathway protein [gamma proteobacterium HdN1]
          Length = 221

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 123/206 (59%), Gaps = 16/206 (7%)

Query: 51  IAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMG 110
           +AP + +MVT F + ++V S+LR  +G+   PPN+V+  LA+ ++ YVM P L     + 
Sbjct: 20  MAPFVAVMVTAFTKLVVVLSLLRNSLGLQQTPPNVVLNGLAIILSLYVMYPVL-----LQ 74

Query: 111 IQPLMNNQITETT----AIQRVAE-------PFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            Q L+ + + ET      + R+ E       P   F+  +++E +   F++ A       
Sbjct: 75  TQSLITSHLKETPEAKLTVDRLIEIFDVGKKPLKDFLIRHSKESERHFFLESARQLLPEE 134

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           D       ++ +++P+F +SEL  +F+IGFL+ LPFLIID++V+ ++MA+G+ ML PT +
Sbjct: 135 DRNNIHEDDFLVIVPAFTVSELSAAFQIGFLLFLPFLIIDLLVSNLLMALGIAMLSPTQV 194

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FV I GW+ L+  LV ++
Sbjct: 195 SLPFKLLLFVFISGWTQLIHGLVLTY 220


>gi|219684692|ref|ZP_03539635.1| flagellar biosynthetic protein FliP [Borrelia garinii PBr]
 gi|219685749|ref|ZP_03540560.1| flagellar biosynthetic protein FliP [Borrelia garinii Far04]
 gi|219672054|gb|EED29108.1| flagellar biosynthetic protein FliP [Borrelia garinii PBr]
 gi|219672688|gb|EED29716.1| flagellar biosynthetic protein FliP [Borrelia garinii Far04]
          Length = 254

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 74/199 (37%), Positives = 123/199 (61%), Gaps = 9/199 (4%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           +P  L+++T F R  IV   +R  + +   PP  +++ LALF+T + M PT +   +   
Sbjct: 61  SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNVIYKQAY 120

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMR---NNTREKDLSLFMDMAHSSHRNTDITKN-DHI 167
            PL  ++I       +   P  +FM    ++ R +++ LFM ++     N D  KN   +
Sbjct: 121 LPLKESKINFDEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSIS-----NYDRPKNFSEV 175

Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227
              +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP  ISLPFK+I 
Sbjct: 176 PTHVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLIL 235

Query: 228 FVLIDGWSLLVENLVKSFI 246
           FV++DGW+L+   L+KSF+
Sbjct: 236 FVMVDGWTLITSGLIKSFM 254


>gi|310823554|ref|YP_003955912.1| type III secretion apparatus protein yscr/hrcr [Stigmatella
           aurantiaca DW4/3-1]
 gi|309396626|gb|ADO74085.1| Type III secretion apparatus protein YscR/HrcR [Stigmatella
           aurantiaca DW4/3-1]
          Length = 206

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 127/204 (62%), Gaps = 2/204 (0%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            +  +LS+ P  ++M+T F +  +V S+ R+ MG    PP +V+  LA  ++ ++MSP +
Sbjct: 2   AVLAVLSLLPFAVVMLTSFSKIAVVLSLARSAMGTQQAPPTVVLTGLAAVLSAHIMSPVM 61

Query: 104 DRSIEMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
            R  E+G +   + +       A++R AEP   F+  +   ++ S F+++A       + 
Sbjct: 62  ARMYEVGREAARDAESGAQILAAVERTAEPLRAFLVKHGSAEERSRFVELARELRPPEEA 121

Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
           T+    +  +++P+F+I+EL+ +F++GFL+ LPFL++DM++A I++A+GM  L P+ +SL
Sbjct: 122 TQVQEGDLFVVVPAFVITELKEAFQMGFLLFLPFLVLDMVIANILLALGMQSLSPSQVSL 181

Query: 222 PFKVIFFVLIDGWSLLVENLVKSF 245
           PFK++ FV +DGW LL + L++ +
Sbjct: 182 PFKILLFVTVDGWPLLAQGLIQGY 205


>gi|149191147|ref|ZP_01869405.1| flagellar biosynthesis protein P [Vibrio shilonii AK1]
 gi|148834985|gb|EDL51964.1| flagellar biosynthesis protein P [Vibrio shilonii AK1]
          Length = 245

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 79/201 (39%), Positives = 124/201 (61%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T+LS  P  +IM T F R IIV +ILR  +G+   PPN V+I +AL  T  +M P   
Sbjct: 45  LMTMLSFVPAFVIMCTSFTRIIIVLAILRQALGLQQTPPNQVLIGIALIFTLLIMRPVWT 104

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +  +    P   + IT   A+    +P   +M + T+ K L     +A      +D    
Sbjct: 105 KIYDTAYVPYSTDDITLMEALASAEKPLRRYMLDQTQRKALEQVTKIAGEKTLASD---- 160

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           + I + IL+P++++SEL+ +F+IGF++ LPFL+ID++VA+++M+MGMMML P  +SLPFK
Sbjct: 161 EKIPFLILLPAYLLSELKVAFQIGFMLFLPFLVIDLVVASVLMSMGMMMLSPLIVSLPFK 220

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FV++DGW LL+ +L  SF
Sbjct: 221 LLVFVIVDGWGLLMGSLANSF 241


>gi|318607487|emb|CBY28985.1| type III secretion inner membrane protein
           (YscR,SpaR,HrcR,EscR,homologous to flagellar export
           components) [Yersinia enterocolitica subsp. palearctica
           Y11]
          Length = 216

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 79/195 (40%), Positives = 121/195 (62%), Gaps = 6/195 (3%)

Query: 56  LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRSIEMGIQPL 114
           ++M T F +  IV S+LR  +G+  VPPN+ I  LAL +T ++M+P  LD    +  +PL
Sbjct: 24  MVMGTSFLKLSIVLSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVHARLQDEPL 83

Query: 115 MNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHSSH--RNTDITKNDHIEYRI 171
            N+       I   A EP+  F++ NT    +  F D+  +    R  D  K + +   I
Sbjct: 84  PNDLGALLYHIDEHALEPYRDFLQRNTDAAQVHFFNDIVQTKWPVRYRDTIKPNSL--LI 141

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           L+P+F +S+L  +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK++ F+LI
Sbjct: 142 LMPAFTLSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMVSPITISLPFKLLIFILI 201

Query: 232 DGWSLLVENLVKSFI 246
           DGW LL+  LV S++
Sbjct: 202 DGWGLLLGQLVGSYL 216


>gi|213029393|ref|ZP_03343840.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 203

 Score =  138 bits (348), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 75/207 (36%), Positives = 124/207 (59%), Gaps = 11/207 (5%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL- 103
           I  +LSI P++++M T F +  +VFSILR  +G+  VPPN+ +   AL ++ ++M PTL 
Sbjct: 1   ILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLL 60

Query: 104 ---DR--SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
              +R   +++   P   ++        +   P+  F++ N+ EK+ + F ++   +   
Sbjct: 61  AVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLIKRTWPE 115

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
               K       ILIP+F +S+L ++F IG LI LPFL ID++++ I++AMGMMM+ P +
Sbjct: 116 DIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMT 175

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ISLPFK++ F+L  GW L +  LV+SF
Sbjct: 176 ISLPFKLLIFLLAGGWDLTLAQLVQSF 202


>gi|88704277|ref|ZP_01101991.1| flagellar biosynthetic protein FliP [Congregibacter litoralis KT71]
 gi|88701328|gb|EAQ98433.1| flagellar biosynthetic protein FliP [Congregibacter litoralis KT71]
          Length = 248

 Score =  138 bits (348), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 86/193 (44%), Positives = 123/193 (63%), Gaps = 4/193 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P  LI +T F R +IV +ILR  +G    P N +I+ L+LF++ ++M+P  + +    +Q
Sbjct: 58  PAALITMTSFTRILIVLAILRQALGTAQTPSNQIILGLSLFLSLFIMAPVFETAWVTALQ 117

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P MN  +  + A+     PF  FM   TRE DL LF ++      NT     D +   +L
Sbjct: 118 PYMNETVGFSEALDAAKIPFREFMFGQTRETDLLLFAELGGYEPFNT----RDDVPMVVL 173

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           +PSF+ SEL+ +F+IGFL+ +PFLIID++VA ++M+MGMMML P  ISLPFK++ FVLID
Sbjct: 174 LPSFLTSELKTAFQIGFLMFVPFLIIDLVVAAVLMSMGMMMLSPMLISLPFKLMLFVLID 233

Query: 233 GWSLLVENLVKSF 245
           GWSL+   LV SF
Sbjct: 234 GWSLIAATLVTSF 246


>gi|33596843|ref|NP_884486.1| type III secretion system protein [Bordetella parapertussis 12822]
 gi|33600617|ref|NP_888177.1| type III secretion system protein [Bordetella bronchiseptica RB50]
 gi|6708104|gb|AAF25801.1|AF172245_3 BscR [Bordetella bronchiseptica]
 gi|33568216|emb|CAE32129.1| putative type III secretion protein [Bordetella bronchiseptica
           RB50]
 gi|33573544|emb|CAE37535.1| putative type III secretion protein [Bordetella parapertussis]
          Length = 223

 Score =  138 bits (348), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 71/207 (34%), Positives = 124/207 (59%), Gaps = 18/207 (8%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P++++M T F +  +V +++R  +G+  VPPN+ +  LAL ++ YVM+P + R I   +Q
Sbjct: 20  PLIVVMTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHR-IGTEVQ 78

Query: 113 PLMNNQITETTA-----------IQRVAEPFWVFMRNNTREKDLSLFMDMAH---SSHRN 158
            L        TA           ++R   P   FM  N++      F+  A        +
Sbjct: 79  ALTAQAGESGTAAPMALDAVLGVVERGVAPLRAFMLRNSQPAQRDFFLRTARHLWGEEAS 138

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
            D+++++ +   +L P+F++SEL  +F++GFL+ LPF+IID+IV+ I++AMGMMM+ P +
Sbjct: 139 RDLSEDNLL---VLTPAFLVSELTAAFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVT 195

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IS+P K+  FV++DGW+ L++ LV S+
Sbjct: 196 ISMPLKLFLFVMVDGWTRLIQGLVLSY 222


>gi|46562139|ref|YP_009162.1| type III secretion system protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120586838|ref|YP_961183.1| type III secretion system protein [Desulfovibrio vulgaris subsp.
           vulgaris DP4]
 gi|46447676|gb|AAS94342.1| type III secretion system protein, YscR family [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120564252|gb|ABM29995.1| Yop virulence translocation R [Desulfovibrio vulgaris DP4]
 gi|311235512|gb|ADP88365.1| Yop virulence translocation R [Desulfovibrio vulgaris RCH1]
          Length = 216

 Score =  138 bits (348), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 77/207 (37%), Positives = 132/207 (63%), Gaps = 13/207 (6%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP----T 102
            +L +AP  L+MVT + + ++V S++R  +G+  VPP +V+  LA+ ++ ++M+P    T
Sbjct: 14  ALLGLAPFFLMMVTSYVKIVVVTSLVRNALGVQQVPPTMVMNGLAIILSIFIMAPVASGT 73

Query: 103 LDRSIEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRN 158
           LD    M I P  +    E  A+  + + P   F+  N  +K +++FM  A     + ++
Sbjct: 74  LDLMQNMKIGP--DPAPREIIALLDKASPPLRGFLERNADDKVVTVFMSTAKRIWPADQH 131

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
             I++++ +   ILIPSF ISEL R+F+IGFL+ LPF+ ID++++ I++AMGMMM+ P +
Sbjct: 132 ASISRDNLL---ILIPSFTISELTRAFQIGFLLYLPFVAIDLVISNILLAMGMMMVSPMT 188

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ISLPFK++ FV +DGW  + + L+ S+
Sbjct: 189 ISLPFKLLLFVTLDGWLKVSQGLLLSY 215


>gi|331653360|ref|ZP_08354365.1| flagellar biosynthetic protein FliP [Escherichia coli M718]
 gi|331049458|gb|EGI21530.1| flagellar biosynthetic protein FliP [Escherichia coli M718]
          Length = 145

 Score =  138 bits (347), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 64/147 (43%), Positives = 101/147 (68%), Gaps = 4/147 (2%)

Query: 99  MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
           MSP +D+      QP    +I+   A+++ A+P   FM   TRE DL LF  +A++    
Sbjct: 1   MSPVIDKIYVDAYQPFSEEKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGP-- 58

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
             +   + +  RIL+P+++ SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +
Sbjct: 59  --LQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPAT 116

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 117 IALPFKLMLFVLVDGWQLLVGSLAQSF 143


>gi|1185059|gb|AAB58968.1| flagellar export protein [Borrelia burgdorferi]
          Length = 254

 Score =  138 bits (347), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 74/199 (37%), Positives = 121/199 (60%), Gaps = 9/199 (4%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           +P  L+++T F R  IV   +R  + +   PP  +++ LALF+T + M PT +   E   
Sbjct: 61  SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNSIYEQAY 120

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMR---NNTREKDLSLFMDMAHSSHRNTDITKN-DHI 167
            PL  ++I       +   P  +FM    ++ R +++ L M M+     N D  KN   +
Sbjct: 121 LPLKESKINFNEFYNKGIAPLRIFMYKQMSDGRHEEIRLLMSMS-----NYDRPKNFSEV 175

Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227
              +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP  ISL FK+I 
Sbjct: 176 PSHVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLHFKLIL 235

Query: 228 FVLIDGWSLLVENLVKSFI 246
           FV++DGW+L+   L+KSF+
Sbjct: 236 FVMVDGWTLITSGLIKSFM 254


>gi|154249381|ref|YP_001410206.1| flagellar biosynthesis protein FliP [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153317|gb|ABS60549.1| flagellar biosynthetic protein FliP [Fervidobacterium nodosum
           Rt17-B1]
          Length = 251

 Score =  138 bits (347), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 79/197 (40%), Positives = 123/197 (62%), Gaps = 7/197 (3%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +LI+ T F R IIVFS  R  +G   VPPN V+I LAL +TF++M PT +      +
Sbjct: 57  APSILILFTSFTRIIIVFSFTRNALGTRQVPPNQVLIGLALILTFFIMQPTWNEINTNAL 116

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRN---NTREKDLSLFMDMAHSSHRNTDITKNDHIE 168
            P M+ +IT      R       FM N   N   +D ++F  +A++  +N  +TK +   
Sbjct: 117 TPYMDGKITYQEFFSRTMASVRKFMINELVNHHNED-NVF-TIANALKQN--VTKIEEAP 172

Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
             +L  +F++ E+   F++G LI +PF++IDM+VA+I++++GM+M+PP  +SLPFKV+ F
Sbjct: 173 DSLLTAAFVLGEVEIGFKMGILIYIPFIVIDMVVASILLSLGMIMIPPVLVSLPFKVLVF 232

Query: 229 VLIDGWSLLVENLVKSF 245
           VL +GW  ++ +LVKSF
Sbjct: 233 VLANGWESIIVSLVKSF 249


>gi|238793338|ref|ZP_04636964.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia
           intermedia ATCC 29909]
 gi|238727307|gb|EEQ18835.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia
           intermedia ATCC 29909]
          Length = 216

 Score =  137 bits (346), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 78/200 (39%), Positives = 127/200 (63%), Gaps = 16/200 (8%)

Query: 56  LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRSIEMGIQPL 114
           ++M T F +  IVFS+LR  +G+  VPPN+ I  LAL +T ++M+P  LD    +  +PL
Sbjct: 24  MVMGTSFLKLSIVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVHARLQDEPL 83

Query: 115 MNNQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSS----HRNTDITKNDH 166
            N+       +Q + E    P+  F++ NT  + ++ F D+  +     +RN+ +  N  
Sbjct: 84  PND---IGALLQHIDEHALVPYRDFLQRNTDTEQVTFFNDIVQTKWPERYRNS-VKPNSL 139

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
           +   IL+P+F +++L  +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK++
Sbjct: 140 L---ILMPAFTLTQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMVSPITISLPFKLL 196

Query: 227 FFVLIDGWSLLVENLVKSFI 246
            F+LIDGW LL+  LV S++
Sbjct: 197 IFILIDGWGLLLGQLVGSYL 216


>gi|27376930|ref|NP_768459.1| type III secretion system protein [Bradyrhizobium japonicum USDA
           110]
 gi|12620526|gb|AAG60802.1|AF322012_107 RhcR [Bradyrhizobium japonicum]
 gi|27350072|dbj|BAC47084.1| RhcR protein [Bradyrhizobium japonicum USDA 110]
          Length = 221

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/202 (37%), Positives = 116/202 (57%), Gaps = 8/202 (3%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108
           L +    ++  T F +  +V  ++R  +G  S+PPN+V+   AL +T ++ +P  +++  
Sbjct: 18  LGLLAFAVVTTTAFIKVSVVLFLVRNALGTQSIPPNIVLYGAALILTVFISAPVFEQTYN 77

Query: 109 MGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH---SSHRNTDITK 163
               P +  Q  +    A +   EP  V ++  T E+    F+       S      +T 
Sbjct: 78  RLTDPQLRYQSFDDWVMAAKEGQEPLRVHLKKFTNEEQRRFFLSSTEHVWSEEMRGSVTA 137

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
           +D   + IL+PSF+ISEL+R FEIGFL+ LPF+ ID+IV TI+MAMGM M+ PT IS+PF
Sbjct: 138 DD---FSILVPSFLISELKRGFEIGFLLYLPFITIDLIVTTILMAMGMSMVSPTVISVPF 194

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K+  FV IDGWS L+  LV S+
Sbjct: 195 KLFLFVTIDGWSRLMHGLVLSY 216


>gi|330505666|ref|YP_004382535.1| flagellar biosynthesis protein FliP [Pseudomonas mendocina NK-01]
 gi|328919952|gb|AEB60783.1| flagellar biosynthesis protein FliP [Pseudomonas mendocina NK-01]
          Length = 250

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/200 (41%), Positives = 123/200 (61%), Gaps = 4/200 (2%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           I T+L   P LL+M+TCF RFIIV +ILR  +G+   PPN V+I +AL +T  VM P   
Sbjct: 51  IMTLLGFLPALLMMMTCFTRFIIVLAILRQAIGLQQSPPNPVLIGIALCLTLLVMRPVWQ 110

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
                   P   +QI+    +         FM   T +  L   + +A     + D+ + 
Sbjct: 111 EMYTEAYVPFEADQISLEQGLGEGKRIISQFMLAQTSKNSLETLVALADEEMPD-DLAQL 169

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D   + +L+P+F++SEL+ +F++GF+I +PFL+ID++VA+++MAMGMMML P  ISLPFK
Sbjct: 170 D---FSLLLPAFVLSELKTAFQLGFMIFVPFLVIDLVVASVLMAMGMMMLSPMMISLPFK 226

Query: 225 VIFFVLIDGWSLLVENLVKS 244
           ++ FVL+DGW+LLV  L  S
Sbjct: 227 LLVFVLVDGWTLLVGTLTTS 246


>gi|224531662|ref|ZP_03672294.1| flagellar biosynthetic protein FliP [Borrelia valaisiana VS116]
 gi|224511127|gb|EEF81533.1| flagellar biosynthetic protein FliP [Borrelia valaisiana VS116]
          Length = 254

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 74/199 (37%), Positives = 122/199 (61%), Gaps = 9/199 (4%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           +P  L+++T F R  IV   +R  + +   PP  +I+ LALF+T + M PT +   +   
Sbjct: 61  SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIIMGLALFLTIFTMWPTFNVIYKQAY 120

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMR---NNTREKDLSLFMDMAHSSHRNTDITKN-DHI 167
            PL  ++I       +   P  +FM    ++   +++ LFM ++     N D  KN   +
Sbjct: 121 LPLKESKINFDEFYNKGIAPLRIFMYKQMSDGSHEEIRLFMSIS-----NYDRPKNFSEV 175

Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227
              +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP  ISLPFK+I 
Sbjct: 176 PTHVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLIL 235

Query: 228 FVLIDGWSLLVENLVKSFI 246
           FV++DGW+L+   L+KSF+
Sbjct: 236 FVMVDGWTLITSGLIKSFM 254


>gi|224534252|ref|ZP_03674830.1| flagellar biosynthetic protein FliP [Borrelia spielmanii A14S]
 gi|224514354|gb|EEF84670.1| flagellar biosynthetic protein FliP [Borrelia spielmanii A14S]
          Length = 254

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 73/199 (36%), Positives = 123/199 (61%), Gaps = 9/199 (4%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           +P  L+++T F R  IV   +R  + +   PP  +++ LALF+T + M PT +   +   
Sbjct: 61  SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNVIYKQAY 120

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMR---NNTREKDLSLFMDMAHSSHRNTDITKN-DHI 167
            PL  ++I       +   P  +FM    ++ R +++ LFM ++     + D  KN   +
Sbjct: 121 LPLKESKINFDEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSIS-----SYDRPKNFSEV 175

Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227
              +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP  ISLPFK+I 
Sbjct: 176 PTHVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLIL 235

Query: 228 FVLIDGWSLLVENLVKSFI 246
           FV++DGW+L+   L+KSF+
Sbjct: 236 FVMVDGWTLITSGLIKSFM 254


>gi|119947195|ref|YP_944875.1| flagellar biosynthesis protein FliP [Psychromonas ingrahamii 37]
 gi|119865799|gb|ABM05276.1| flagellar biosynthetic protein FliP [Psychromonas ingrahamii 37]
          Length = 245

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/201 (39%), Positives = 122/201 (60%), Gaps = 4/201 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T LS  P  ++M TCF R IIV +ILR  +G+   PPN V++ +AL ++  +M P   
Sbjct: 48  LMTALSFIPAFILMCTCFTRIIIVLAILRQALGLQQSPPNQVLLGIALALSILIMKPVWT 107

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              +    P     I+  TA     +P   FM   T    L   M++A          K 
Sbjct: 108 DVYDNAFVPYDAGDISLLTAASIAEKPVREFMLRQTHSSSLEQMMNIAGEDEN----VKP 163

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           + I + I++P+F+ISEL+ +F+IGF++ +PFLIID++VA+++M+MGMMML P  +SLPFK
Sbjct: 164 EDISFAIILPAFVISELKTAFQIGFMLFMPFLIIDLVVASVLMSMGMMMLSPLIVSLPFK 223

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FVL+DGW++LV +L  SF
Sbjct: 224 LLAFVLVDGWTMLVGSLSTSF 244


>gi|283782107|ref|YP_003372862.1| flagellar biosynthetic protein FliP [Pirellula staleyi DSM 6068]
 gi|283440560|gb|ADB19002.1| flagellar biosynthetic protein FliP [Pirellula staleyi DSM 6068]
          Length = 297

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/207 (39%), Positives = 127/207 (61%), Gaps = 6/207 (2%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T+LS+AP +L+M T F R ++V  +LR  +G   +PP+ VI +LA+F+T  +M+PT +
Sbjct: 87  LLTVLSLAPAILLMTTSFVRIVVVLGLLRQALGTNQLPPSQVITALAMFLTLLIMTPTWN 146

Query: 105 RSIEMGIQPLMNN-QITETTAIQRVAEPFWVFMRNN----TREKDLSLFMDMAHSSHRNT 159
                 I+P  +   +T   A  R + P   FM           D+ LF +     +R  
Sbjct: 147 SVYHEAIEPYTSGADLTPEEAWNRGSLPIKRFMSRQIEVAGNSDDVWLFYEYLPEENRPA 206

Query: 160 DITKN-DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
              +  D +   +L+P+FM+SEL+ SF IGF I LPFLI+D++V+++ ++MGMMMLPP  
Sbjct: 207 KPPETYDEVPLSVLLPAFMLSELKTSFLIGFQIYLPFLILDLVVSSVTISMGMMMLPPVM 266

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ISLP K++ FVL+DGW+L V  L++SF
Sbjct: 267 ISLPLKLLLFVLVDGWTLTVRMLLESF 293


>gi|76097667|gb|ABA39515.1| flagellar protein [Paenibacillus larvae subsp. larvae]
          Length = 140

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/144 (44%), Positives = 101/144 (70%), Gaps = 4/144 (2%)

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           ++ LALF T ++M+PTL    ++ +QP +  ++ +T A+++ AEP   FM ++TR KDL 
Sbjct: 1   LVGLALFPTLFIMAPTLGDINQVAVQPYIKGELNQTQALEKAAEPIKKFMWSHTRPKDLQ 60

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
           LF+D +++   N      +      L+P+F ISEL+ +F++GF+I +PFL+IDMI+++ +
Sbjct: 61  LFLDYSNAEKPNGP----EDTPIAALVPAFAISELKTAFQMGFMIFIPFLVIDMIISSTL 116

Query: 207 MAMGMMMLPPTSISLPFKVIFFVL 230
           MAMGMMMLPP  ISLPFK++ FVL
Sbjct: 117 MAMGMMMLPPVMISLPFKILLFVL 140


>gi|33593240|ref|NP_880884.1| type III secretion system protein [Bordetella pertussis Tohama I]
 gi|29603234|emb|CAC79579.1| bscR [Bordetella pertussis Tohama I]
 gi|33563615|emb|CAE42516.1| putative type III secretion protein [Bordetella pertussis Tohama I]
 gi|332382649|gb|AEE67496.1| type III secretion system protein [Bordetella pertussis CS]
          Length = 223

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/207 (34%), Positives = 123/207 (59%), Gaps = 18/207 (8%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P++++M T F +  +V +++R  +G+  VPPN+ +  LAL ++ YVM+P + R I   +Q
Sbjct: 20  PLIVVMTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHR-IGTEVQ 78

Query: 113 PLMNNQITETTAI-----------QRVAEPFWVFMRNNTREKDLSLFMDMAH---SSHRN 158
            L        TA            +R   P   FM  N++      F+  A        +
Sbjct: 79  ALTAQAGESGTAAPMALDAVLGVAERGVGPLRAFMLRNSQPAQRDFFLRTARHLWGEEAS 138

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
            D+++++ +   +L P+F++SEL  +F++GFL+ LPF+IID+IV+ I++AMGMMM+ P +
Sbjct: 139 RDLSEDNLL---VLTPAFLVSELTAAFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVT 195

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IS+P K+  FV++DGW+ L++ LV S+
Sbjct: 196 ISMPLKLFLFVMVDGWTRLIQGLVLSY 222


>gi|216264092|ref|ZP_03436086.1| flagellar biosynthetic protein FliP [Borrelia afzelii ACA-1]
 gi|215980136|gb|EEC20958.1| flagellar biosynthetic protein FliP [Borrelia afzelii ACA-1]
          Length = 254

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 73/199 (36%), Positives = 123/199 (61%), Gaps = 9/199 (4%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           +P  L+++T F R  IV   +R  + +   PP  +++ LALF+T + M PT +   +   
Sbjct: 61  SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNVIYKQAY 120

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMR---NNTREKDLSLFMDMAHSSHRNTDITKN-DHI 167
            PL  ++I       +   P  +FM    ++ R +++ LFM ++     + D  KN   +
Sbjct: 121 LPLKESKINFDEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSIS-----SYDRPKNFSEV 175

Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227
              +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP  ISLPFK+I 
Sbjct: 176 PTHVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLIL 235

Query: 228 FVLIDGWSLLVENLVKSFI 246
           FV++DGW+L+   L+KSF+
Sbjct: 236 FVMVDGWTLITSGLIKSFM 254


>gi|297620337|ref|YP_003708474.1| type III secretion inner membrane protein SctR [Waddlia
           chondrophila WSU 86-1044]
 gi|297375638|gb|ADI37468.1| type III secretion inner membrane protein SctR [Waddlia
           chondrophila WSU 86-1044]
          Length = 296

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/216 (34%), Positives = 125/216 (57%), Gaps = 17/216 (7%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            + TILS+ P +++++T F + +IV S+LR  +G+   PPN +I  + L ++ ++M PT+
Sbjct: 83  AVLTILSMLPFIVMILTSFMKIVIVLSLLRNALGVQQAPPNQIINGVGLMLSMFIMYPTV 142

Query: 104 DRSIEMGIQPLMNNQITET-----------TAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
               E+  +     Q  ++           T      EP   F+ +N+  +  +LF  MA
Sbjct: 143 VEMYEVSQKATQEMQAPDSVISSGSSTYILTIADATKEPLRTFLIDNSSVRHRALFFRMA 202

Query: 153 HS---SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
           +         ++   D I   I++PSF+ S+L+ +FEIG LI +PF +ID++ + I++AM
Sbjct: 203 YKVLPEKYRPNLKPEDFI---IVVPSFITSQLKDAFEIGVLIYIPFFVIDLVTSNILLAM 259

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMML P +IS+P K+   V++DGW+LLVE LV +F
Sbjct: 260 GMMMLSPVTISMPLKLFLLVMLDGWTLLVEGLVNTF 295


>gi|320193801|gb|EFW68434.1| type III secretion system protein [Escherichia coli WV_060327]
          Length = 217

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/199 (36%), Positives = 123/199 (61%), Gaps = 8/199 (4%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           +F +LS+ PI +++ T F +  IV  IL+  +G+  VPPN+ + S++L +T ++MSP + 
Sbjct: 17  VFFLLSLLPIFVVVGTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIIL 76

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNTD 160
           +  +   Q  +N   T++   Q+V E    P+  F+  NT + ++  F   A     N  
Sbjct: 77  QINDNISQEQIN--YTDSDFFQKVDEKILSPYRGFLEKNTEKDNVEFFERAAQKKLGNET 134

Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
           I K D +   IL+P+F + +L  +F+IGFL+ LPF+ ID+I++ I++A+GMMM+ P +IS
Sbjct: 135 ILKKDSL--FILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTIS 192

Query: 221 LPFKVIFFVLIDGWSLLVE 239
           +PFK++ F+L+ GW  L E
Sbjct: 193 IPFKILLFILVGGWQKLFE 211


>gi|194426341|ref|ZP_03058896.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli B171]
 gi|260845712|ref|YP_003223490.1| T3SS structure protein EscR [Escherichia coli O103:H2 str. 12009]
 gi|260858247|ref|YP_003232138.1| T3SS structure protein EscR [Escherichia coli O26:H11 str. 11368]
 gi|13447701|gb|AAK26700.1|AF200363_8 EscR [Escherichia coli]
 gi|18034505|gb|AAL57527.1|AF453441_11 EscR [Escherichia coli]
 gi|17384635|emb|CAC81847.1| EscR protein [Escherichia coli]
 gi|57434472|emb|CAI43889.1| EscR protein [Escherichia coli]
 gi|189473194|gb|ACD99645.1| putative EscR [Escherichia coli]
 gi|194415649|gb|EDX31916.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli B171]
 gi|195183213|dbj|BAG66758.1| T3SS structure protein EscR [Escherichia coli O111:H-]
 gi|254692325|emb|CAR47966.1| EscR protein [Escherichia coli]
 gi|254692393|emb|CAR48036.1| EscR protein [Escherichia coli]
 gi|257756896|dbj|BAI28398.1| T3SS structure protein EscR [Escherichia coli O26:H11 str. 11368]
 gi|257760859|dbj|BAI32356.1| T3SS structure protein EscR [Escherichia coli O103:H2 str. 12009]
          Length = 217

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/200 (36%), Positives = 124/200 (62%), Gaps = 10/200 (5%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-L 103
           +F +LS+ PI +++ T F +  IV  IL+  +G+  VPPN+ + S++L +T ++MSP  L
Sbjct: 17  VFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIIL 76

Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
             +  +  +P+     T++   Q+V E    P+  F+  NT ++++  F   A     N 
Sbjct: 77  QINDNISQEPI---NYTDSDFFQKVDEKILSPYRGFLEKNTEKENVEFFERAAQKKLGNE 133

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            I K D +   IL+P+F + +L  +F+IGFL+ LPF+ ID+I++ I++A+GMMM+ P +I
Sbjct: 134 TILKKDSL--FILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTI 191

Query: 220 SLPFKVIFFVLIDGWSLLVE 239
           S+PFK++ F+L+ GW  L E
Sbjct: 192 SIPFKILLFILVGGWQKLFE 211


>gi|27550057|gb|AAO18040.1| LscR [Photorhabdus luminescens]
          Length = 217

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 73/196 (37%), Positives = 121/196 (61%), Gaps = 12/196 (6%)

Query: 57  IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQP-LM 115
           +M T F +  +VFS+LR  +G+  +PPN+ +  LA+ +T YVM+P     +    Q  L 
Sbjct: 25  VMATSFLKLAVVFSLLRNALGVQQIPPNMAMYGLAIILTIYVMAP-----VGFATQDYLR 79

Query: 116 NNQITETTA--IQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169
            N+++ + A  +++  E    P+  F++ + +  + + F+D       +    + +    
Sbjct: 80  QNEVSFSNAQSVEKFVEEGLTPYRNFLKQHIKPSERTFFIDSTRQIWPSQYADRLEPDSL 139

Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
            IL+PSF +SEL R+FEIGFL+ LPF+ ID+I++ I++AMGMMM+ P +ISLPFK++ FV
Sbjct: 140 LILLPSFTVSELTRAFEIGFLLYLPFIAIDLIISNILLAMGMMMVSPMTISLPFKLLLFV 199

Query: 230 LIDGWSLLVENLVKSF 245
           L+DGW+ L   LV S+
Sbjct: 200 LLDGWTRLTHGLVISY 215


>gi|146309436|ref|YP_001189901.1| flagellar biosynthesis protein FliP [Pseudomonas mendocina ymp]
 gi|145577637|gb|ABP87169.1| flagellar biosynthetic protein FliP [Pseudomonas mendocina ymp]
          Length = 250

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/200 (41%), Positives = 122/200 (61%), Gaps = 4/200 (2%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           I T+L   P +L+M+TCF RFIIV +ILR  +G+   PPN V+I +AL +T  VM P   
Sbjct: 51  IMTLLGFLPAMLMMMTCFTRFIIVLAILRQAIGLQQSPPNPVLIGIALCLTLLVMRPVWQ 110

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
                   P   +QI+    +         FM   T +  L   + +A       D+ + 
Sbjct: 111 EMYTEAYVPFEADQISLEQGLGEGKRIISQFMLAQTSKNSLETLVALA-GEELPEDLAQL 169

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D   + +L+P+F++SEL+ +F++GF+I +PFL+ID++VA+++MAMGMMML P  ISLPFK
Sbjct: 170 D---FSLLLPAFVLSELKTAFQLGFMIFVPFLVIDLVVASVLMAMGMMMLSPMMISLPFK 226

Query: 225 VIFFVLIDGWSLLVENLVKS 244
           ++ FVL+DGW+LLV  L  S
Sbjct: 227 LLVFVLVDGWTLLVGTLTSS 246


>gi|238785155|ref|ZP_04629149.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia
           bercovieri ATCC 43970]
 gi|238713970|gb|EEQ05988.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia
           bercovieri ATCC 43970]
          Length = 216

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 77/194 (39%), Positives = 120/194 (61%), Gaps = 6/194 (3%)

Query: 57  IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRSIEMGIQPLM 115
           +M T F +  IVFS+LR  +G+  VPPN+ I  LAL +T ++M+P  LD    +  +PL 
Sbjct: 25  VMGTSFLKLSIVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVHARLQDEPLP 84

Query: 116 NNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHSS--HRNTDITKNDHIEYRIL 172
           N        I + A  P+  F++ NT  +  + F D+  +    R  D  K   +   IL
Sbjct: 85  NEIGALLEHIDKHALGPYRDFLQRNTDAEQATFFNDIVQTKWPERLRDSVKPSSL--LIL 142

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           +P+F +S+L  +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK++ F+L++
Sbjct: 143 MPAFTLSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMVSPITISLPFKLLIFILVN 202

Query: 233 GWSLLVENLVKSFI 246
           GW LL+  LV S++
Sbjct: 203 GWGLLMGQLVGSYL 216


>gi|15804244|ref|NP_290283.1| type III secretion system protein [Escherichia coli O157:H7 EDL933]
 gi|168748640|ref|ZP_02773662.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC4113]
 gi|168753533|ref|ZP_02778540.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC4401]
 gi|168759830|ref|ZP_02784837.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC4501]
 gi|168766130|ref|ZP_02791137.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC4486]
 gi|168772321|ref|ZP_02797328.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC4196]
 gi|168779865|ref|ZP_02804872.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC4076]
 gi|168785598|ref|ZP_02810605.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC869]
 gi|168798679|ref|ZP_02823686.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC508]
 gi|193069204|ref|ZP_03050161.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli E110019]
 gi|195936266|ref|ZP_03081648.1| type III secretion system protein [Escherichia coli O157:H7 str.
           EC4024]
 gi|208806674|ref|ZP_03249011.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC4206]
 gi|208812050|ref|ZP_03253379.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC4045]
 gi|208819434|ref|ZP_03259754.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC4042]
 gi|209398112|ref|YP_002273179.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC4115]
 gi|215488994|ref|YP_002331425.1| type III secretion system protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217324318|ref|ZP_03440402.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. TW14588]
 gi|254795658|ref|YP_003080495.1| type III secretion system protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|260869701|ref|YP_003236103.1| T3SS structure protein EscR [Escherichia coli O111:H- str. 11128]
 gi|261225802|ref|ZP_05940083.1| LEE-encoded type III secretion system factor [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261258847|ref|ZP_05951380.1| T3SS structure protein EscR [Escherichia coli O157:H7 str. FRIK966]
 gi|291285071|ref|YP_003501889.1| Type III secretion system EscR protein [Escherichia coli O55:H7
           str. CB9615]
 gi|312967934|ref|ZP_07782146.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|12518477|gb|AAG58847.1|AE005597_5 escR [Escherichia coli O157:H7 str. EDL933]
 gi|3414917|gb|AAC31528.1| L0049 [Escherichia coli]
 gi|54311600|emb|CAG17515.1| EscR protein [Escherichia coli]
 gi|187771664|gb|EDU35508.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC4196]
 gi|188016994|gb|EDU55116.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC4113]
 gi|189002477|gb|EDU71463.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC4076]
 gi|189358993|gb|EDU77412.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC4401]
 gi|189364379|gb|EDU82798.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC4486]
 gi|189369636|gb|EDU88052.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC4501]
 gi|189374319|gb|EDU92735.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC869]
 gi|189378860|gb|EDU97276.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC508]
 gi|192957528|gb|EDV87974.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli E110019]
 gi|195957534|gb|ACG59645.1| type III secretion system protein EscR [Escherichia coli O157:H7]
 gi|195957593|gb|ACG59703.1| type III secretion system protein EscR [Escherichia coli]
 gi|195957650|gb|ACG59759.1| type III secretion system protein EscR [Escherichia coli]
 gi|208726475|gb|EDZ76076.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC4206]
 gi|208733327|gb|EDZ82014.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC4045]
 gi|208739557|gb|EDZ87239.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC4042]
 gi|209159512|gb|ACI36945.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC4115]
 gi|215267066|emb|CAS11511.1| T3SS structure protein EscR [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217320539|gb|EEC28963.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. TW14588]
 gi|221361440|emb|CAX18593.1| Type III secretion system, LEE associated [Escherichia coli]
 gi|221361497|emb|CAX18668.1| Type III secretion system, LEE associated [Escherichia coli]
 gi|221361558|emb|CAX18748.1| Type III secretion system, LEE associated [Escherichia coli]
 gi|254595058|gb|ACT74419.1| LEE-encoded type III secretion system factor [Escherichia coli
           O157:H7 str. TW14359]
 gi|255348331|gb|ACU09473.1| type III secretion system protein EscR [Escherichia coli]
 gi|257766057|dbj|BAI37552.1| T3SS structure protein EscR [Escherichia coli O111:H- str. 11128]
 gi|290764944|gb|ADD58905.1| Type III secretion system EscR protein [Escherichia coli O55:H7
           str. CB9615]
 gi|312287495|gb|EFR15403.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|320639373|gb|EFX08988.1| type III secretion system protein YscR [Escherichia coli O157:H7
           str. G5101]
 gi|320644817|gb|EFX13853.1| type III secretion system protein YscR [Escherichia coli O157:H-
           str. 493-89]
 gi|320650081|gb|EFX18577.1| type III secretion system protein YscR [Escherichia coli O157:H-
           str. H 2687]
 gi|320655428|gb|EFX23363.1| type III secretion system protein YscR [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320661054|gb|EFX28490.1| type III secretion system protein YscR [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320666180|gb|EFX33186.1| type III secretion system protein YscR [Escherichia coli O157:H7
           str. LSU-61]
          Length = 217

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 72/200 (36%), Positives = 123/200 (61%), Gaps = 10/200 (5%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-L 103
           +F +LS+ PI +++ T F +  IV  IL+  +G+  VPPN+ + S++L +T ++MSP  L
Sbjct: 17  VFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIIL 76

Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
             +  +  +P+     T++   Q+V E    P+  F+  NT + ++  F   A     N 
Sbjct: 77  QINDNISQEPI---NYTDSDFFQKVDEKILSPYRGFLEKNTEKDNVEFFERAAQKKLGNE 133

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            I K D +   IL+P+F + +L  +F+IGFL+ LPF+ ID+I++ I++A+GMMM+ P +I
Sbjct: 134 TILKKDSL--FILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTI 191

Query: 220 SLPFKVIFFVLIDGWSLLVE 239
           S+PFK++ F+L+ GW  L E
Sbjct: 192 SIPFKILLFILVGGWQKLFE 211


>gi|317407761|gb|EFV87688.1| type III secretion protein [Achromobacter xylosoxidans C54]
          Length = 230

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 127/221 (57%), Gaps = 25/221 (11%)

Query: 46  FTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDR 105
            +++++ P+ ++M T F +  +V  ++R  +G+   PPN+ +  LA+ ++ YVM+P +  
Sbjct: 13  LSMVALVPLAVVMTTSFLKISVVLVLVRNALGIQQAPPNMALYGLAVILSAYVMAP-VGY 71

Query: 106 SIEMGIQPLMNNQITETTA------------------IQRVAEPFWVFMRNNTREKDLSL 147
            I   ++ + +   TE+ A                    R AEP   FM  N+R +    
Sbjct: 72  QISAELRAVASAPATESGAPGTQGAQAGSSLENFLDVAARAAEPMRGFMLKNSRAEQRDF 131

Query: 148 FMDMAH---SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
           F+  A       +   + + D I   +L+P+F++SEL  +F++GFL+ LPF++ID+IV+ 
Sbjct: 132 FVRTARQLWGPEQAAALRETDLI---VLVPAFLLSELTVAFQVGFLLYLPFVVIDLIVSN 188

Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           I+MAMGMMM+ P +IS+P K+  FV++DGWS L++ LV S+
Sbjct: 189 ILMAMGMMMVSPVTISMPLKLFLFVMVDGWSRLIQGLVLSY 229


>gi|86157131|ref|YP_463916.1| type III secretion system protein [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85773642|gb|ABC80479.1| type III secretion system inner membrane P protein
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 225

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 71/189 (37%), Positives = 113/189 (59%), Gaps = 2/189 (1%)

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           M+T F +  +V SI R+ +G   VPPN V+  LAL +T  VM+P  +R+  +        
Sbjct: 36  MLTSFLKISVVLSIARSALGAPQVPPNTVVTGLALVLTLLVMAPVAERAAALARPAPGER 95

Query: 118 QITET-TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
            +  T  A+QR A P   F+    R  D + F+D+A    R  D       +  +L P+F
Sbjct: 96  GLPATLAALQRGAGPVKAFLARFARPDDRAAFLDVARR-LRAPDAAAPADDDLAVLAPAF 154

Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
           ++SELRR+F IGFL+ +PFL++D++++ +++A+G+  L PTS++LPFK++ FV +DGW L
Sbjct: 155 VVSELRRAFTIGFLVFVPFLVVDLVISNVLLALGLTQLSPTSVALPFKLLLFVAVDGWKL 214

Query: 237 LVENLVKSF 245
           L   L  S+
Sbjct: 215 LARALALSY 223


>gi|317486826|ref|ZP_07945642.1| YscR/HrcR family type III secretion apparatus protein [Bilophila
           wadsworthia 3_1_6]
 gi|316921989|gb|EFV43259.1| YscR/HrcR family type III secretion apparatus protein [Bilophila
           wadsworthia 3_1_6]
          Length = 216

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 69/205 (33%), Positives = 132/205 (64%), Gaps = 9/205 (4%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
            +L +AP  L+MVT + + ++V S++R  +G+  VPP +V+  LA+ ++ ++M+P +  +
Sbjct: 14  ALLGLAPFFLMMVTSYVKIVVVTSLVRNALGVQQVPPAMVMNGLAIILSLFIMAPMMMST 73

Query: 107 IEMGIQPLMNNQITETTAI---QRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTD 160
           +++  +  ++ + +    I    +++ P   F+ +NT +  L  FM  A       ++  
Sbjct: 74  MDIAGKLQISAEPSPKEVIGIVDKLSPPLRKFLSDNTEDGVLRAFMSTAKRIWPKEQHDQ 133

Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
           I+K++ +   IL+P+F ISEL ++F++GFL+ LPF+ ID+I++ I++AMGMMM+ P +IS
Sbjct: 134 ISKDNML---ILVPAFTISELTKAFQVGFLLYLPFIAIDLIISNILLAMGMMMVSPMTIS 190

Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245
           LPFK++ FV +DGW  + + L+ S+
Sbjct: 191 LPFKLLLFVTLDGWLKISQGLLLSY 215


>gi|320103855|ref|YP_004179446.1| type III secretion system inner membrane P protein [Isosphaera
           pallida ATCC 43644]
 gi|319751137|gb|ADV62897.1| type III secretion system inner membrane P protein [Isosphaera
           pallida ATCC 43644]
          Length = 247

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 123/222 (55%), Gaps = 8/222 (3%)

Query: 29  IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
           +P DL+ S     + G+  I S+AP  ++M+T + R  IV ++LR  +G   +P N V++
Sbjct: 27  LPPDLARSA---ASVGVVAIASLAPAAVLMLTAYVRISIVLALLRQALGSPQIPGNQVVM 83

Query: 89  SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN----TREKD 144
            L++ +T  VM P  D   E  I+P    ++    A    AEP   FM       + E+ 
Sbjct: 84  MLSILLTILVMKPVADVVAERAIRPFAAGELDYAQAFAAGAEPVKRFMVKQIVACSNERY 143

Query: 145 LSLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVA 203
           L    D+A      T   +  D +  R++  +F+ISE+  +  +GF I LPFL+ID++ A
Sbjct: 144 LITLHDLAEPPETRTHQPEYLDELPLRVVAAAFLISEINVALWMGFAIYLPFLVIDLVTA 203

Query: 204 TIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            ++ AMG+ +LPP  +++P K++ FVL +GW L+ + L++SF
Sbjct: 204 AVLAAMGLYLLPPAQVAIPLKLMVFVLAEGWWLVAQTLLRSF 245


>gi|37527633|ref|NP_930977.1| type III secretion system protein [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787068|emb|CAE16143.1| Type III secretion component protein SctR [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 217

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 71/196 (36%), Positives = 119/196 (60%), Gaps = 12/196 (6%)

Query: 57  IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQP-LM 115
           +M T F +  +VFS+LR  +G+  +PPN+ +  LA+ +T YVM+P     +    Q  L 
Sbjct: 25  VMATSFLKLAVVFSLLRNALGVQQIPPNMAMYGLAIILTIYVMAP-----VGFATQDYLR 79

Query: 116 NNQITETTA------IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169
            N+++ + A      ++    P+  F++ + +  + + F+D       +    + +    
Sbjct: 80  QNEVSFSNAQSVDKFVEEGLTPYRNFLKQHIKPSERTFFIDSTRQIWPSQYADRLEPDSL 139

Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
            IL+P+F +SEL R+FEIGFL+ LPF+ ID+I++ I++AMGMMM+ P +ISLPFK++ FV
Sbjct: 140 LILLPAFTVSELTRAFEIGFLLYLPFIAIDLIISNILLAMGMMMVSPMTISLPFKLLLFV 199

Query: 230 LIDGWSLLVENLVKSF 245
           L+DGW+ L   LV S+
Sbjct: 200 LLDGWTRLTHGLVISY 215


>gi|218887527|ref|YP_002436848.1| type III secretion system protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758481|gb|ACL09380.1| Yop virulence translocation R [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 216

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 75/208 (36%), Positives = 131/208 (62%), Gaps = 15/208 (7%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP----T 102
            +L +AP  L+MVT + + ++V S++R  +G+  VPP +V+  LA+ ++ ++M+P    T
Sbjct: 14  ALLGLAPFFLMMVTSYVKIVVVTSLVRNALGVQQVPPAMVMNGLAIILSIFIMAPMVEST 73

Query: 103 LD--RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHR 157
           LD  +++ +  QP    ++ E   + R + P   F+  N  +K ++ FM  A       R
Sbjct: 74  LDILKTVRVSEQP-EPREVVEL--LDRASPPLRDFLSRNADDKVITAFMGTAKRIWPKER 130

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
           +  I + + +   IL+P+F ISEL ++F+IGFL+ LPF+ ID+I++ I++AMGMMM+ P 
Sbjct: 131 HDTIRRENLL---ILVPAFTISELTKAFQIGFLLYLPFVAIDLIISNILLAMGMMMVSPM 187

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +ISLPFK++ FV +DGW  + + L+ S+
Sbjct: 188 TISLPFKLLLFVTLDGWLKISQGLLLSY 215


>gi|74317113|ref|YP_314853.1| flagellar biosynthesis protein FliP [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056608|gb|AAZ97048.1| flagellar transport protein FliP [Thiobacillus denitrificans ATCC
           25259]
          Length = 241

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 74/186 (39%), Positives = 114/186 (61%), Gaps = 4/186 (2%)

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R  +V  +LR G+G  + PPNLV+  LA+ +T +VMSP L        +P +   +
Sbjct: 60  TAFTRIAVVLFLLRQGIGSPTAPPNLVLTGLAVLLTLFVMSPALKTINADAYEPYLAGTL 119

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
               A    A P   FM + TR +DL+LF++         D  + + +    L P+F+ S
Sbjct: 120 ALDEAAAEAAAPLKRFMLHQTRAEDLALFVE----DDPTVDPRRAETVPLAALAPAFLTS 175

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+ +F+IGF+++LPFL+ID++VA ++ A+GM+MLPP  +SLP K++ FV +DGW LLV 
Sbjct: 176 ELKTAFQIGFMVVLPFLVIDLVVAAVLTALGMIMLPPQLVSLPLKLLLFVAVDGWHLLVG 235

Query: 240 NLVKSF 245
           +L+ SF
Sbjct: 236 SLIGSF 241


>gi|16520044|ref|NP_444164.1| type III secretion system protein [Sinorhizobium fredii NGR234]
 gi|2494571|sp|P55720|Y4YL_RHISN RecName: Full=Probable translocation protein y4yL
 gi|2182737|gb|AAB91951.1| innermembrane protein RhcR; component of type III secretion
           apparatus [Sinorhizobium fredii NGR234]
          Length = 222

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 71/195 (36%), Positives = 117/195 (60%), Gaps = 8/195 (4%)

Query: 56  LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115
           ++  T F +  +V  ++R  +G  ++PPN+V+ + AL +T +V +P  +++ +    P +
Sbjct: 25  VVTTTAFVKVSVVLFLVRNALGTQTIPPNIVLYAAALILTMFVSAPVAEQTYDRITDPRL 84

Query: 116 NNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYR 170
             Q  +    A +  ++P    ++  T E+    F+              +T +D   + 
Sbjct: 85  RYQSLDDWAEAAKAGSQPLLEHLKKFTNEEQRRFFLSSTEKVWPEEMRAGVTADD---FA 141

Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230
           IL+PSF+ISEL+R+FEIGFL+ LPF++ID+IV TI+MAMGM M+ PT I++PFK+  FV 
Sbjct: 142 ILVPSFLISELKRAFEIGFLLYLPFIVIDLIVTTILMAMGMSMVSPTIIAVPFKLFLFVA 201

Query: 231 IDGWSLLVENLVKSF 245
           IDGWS L+  LV S+
Sbjct: 202 IDGWSRLMHGLVLSY 216


>gi|282891201|ref|ZP_06299704.1| type III secretion inner membrane protein SctR [Parachlamydia
           acanthamoebae str. Hall's coccus]
 gi|281498894|gb|EFB41210.1| type III secretion inner membrane protein SctR [Parachlamydia
           acanthamoebae str. Hall's coccus]
          Length = 319

 Score =  135 bits (339), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 84/265 (31%), Positives = 148/265 (55%), Gaps = 35/265 (13%)

Query: 12  VTPELVFAKSSLH-DVMNIPADLSISTWIVRTFG---------------IFTILSIAPIL 55
            TP +  A S+ +    N+P   S++  ++   G               + TILS+ P +
Sbjct: 58  ATPAVPRASSTSNPSTRNLPKKQSVTEQLLNNQGGMDDIKRPSLITQAIVLTILSLLPFI 117

Query: 56  LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-------DRSIE 108
           ++++T F + +IV S+LR+ +G+   PPN +I  +A  ++ ++M PT+          IE
Sbjct: 118 IMILTSFLKIVIVLSLLRSALGVQQAPPNQIINGVAFMLSLFIMYPTVLKMYDAAQSVIE 177

Query: 109 MGIQPLMNNQITETTAIQRVA----EPFWVFMRNNTREKDLSLFMDMAH----SSHRNTD 160
               P     +  +  I  VA    EP  +F++ N+  K  +LF  MA+     ++R T 
Sbjct: 178 STRAPDSLVSVESSKYIVDVADASKEPLRMFLKRNSSVKHQALFYRMAYRILPENYRAT- 236

Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
             K D  ++ I++P+++ S+L+ +FEIG LI +PF +ID++ + I++AMGMMML P +IS
Sbjct: 237 -LKPD--DFMIVVPAYITSQLKDAFEIGVLIYIPFFVIDLVTSNILLAMGMMMLSPVTIS 293

Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245
           +P K+   V++DGW+LL++ LV +F
Sbjct: 294 MPLKLFLLVMLDGWTLLIDGLVNTF 318


>gi|197121155|ref|YP_002133106.1| type III secretion system protein [Anaeromyxobacter sp. K]
 gi|220915856|ref|YP_002491160.1| type III secretion system inner membrane P protein
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|196171004|gb|ACG71977.1| type III secretion system inner membrane P protein
           [Anaeromyxobacter sp. K]
 gi|219953710|gb|ACL64094.1| type III secretion system inner membrane P protein
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 225

 Score =  134 bits (338), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 113/189 (59%), Gaps = 2/189 (1%)

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           M+T F +  +V SI R+ +G   VPPN V+  LAL +T  VM+P  +R+  +        
Sbjct: 36  MLTSFLKISVVLSIARSALGAPQVPPNTVVTGLALVLTMLVMAPVAERAAALARPAPGER 95

Query: 118 QITET-TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
            +  +  A+QR A P   F+    R  D + F+D+A    R  D       +  +L P+F
Sbjct: 96  GLAASLAALQRGAGPVKAFLARFARPDDRAAFLDVARR-LRAPDAAPPADDDLAVLAPAF 154

Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
           ++SELRR+F IGFL+ +PFL++D++++ +++A+G+  L PTS++LPFK++ FV +DGW L
Sbjct: 155 VVSELRRAFTIGFLVFVPFLVVDLVISNVLLALGLTQLSPTSVALPFKLLLFVAVDGWKL 214

Query: 237 LVENLVKSF 245
           L   L  S+
Sbjct: 215 LARALALSY 223


>gi|111115100|ref|YP_709718.1| flagellar biosynthesis protein FliP [Borrelia afzelii PKo]
 gi|110890374|gb|ABH01542.1| flagellar biosynthesis protein [Borrelia afzelii PKo]
          Length = 254

 Score =  134 bits (338), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 72/199 (36%), Positives = 122/199 (61%), Gaps = 9/199 (4%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           +P  L+++T F R  IV   +R  + +   PP  +++ LALF+T + M PT +   +   
Sbjct: 61  SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNVIYKQAY 120

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMR---NNTREKDLSLFMDMAHSSHRNTDITKN-DHI 167
            PL  ++I       +   P  +FM    ++ R +++ LFM ++     + D  KN   +
Sbjct: 121 LPLKESKINFDEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSIS-----SYDRPKNFSEV 175

Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227
              +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP  ISLP K+I 
Sbjct: 176 PTHVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPLKLIL 235

Query: 228 FVLIDGWSLLVENLVKSFI 246
           FV++DGW+L+   L+KSF+
Sbjct: 236 FVMVDGWTLITSGLIKSFM 254


>gi|283786652|ref|YP_003366517.1| T3SS structural protein EscR [Citrobacter rodentium ICC168]
 gi|15723907|gb|AAL06354.1|AF311901_6 EscR [Citrobacter rodentium]
 gi|282950106|emb|CBG89741.1| T3SS structural protein EscR [Citrobacter rodentium ICC168]
          Length = 217

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 70/195 (35%), Positives = 122/195 (62%), Gaps = 10/195 (5%)

Query: 50  SIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRSIE 108
           S+ PI +++ T F +  IV  IL+  +G+  VPPN+ + S++L +T ++MSP  L  +  
Sbjct: 22  SLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTIFIMSPIILQINDN 81

Query: 109 MGIQPLMNNQITETTAIQRVA----EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +  +P+     T++   Q+V      P+ +F+ NNT ++++  F ++A     N    K 
Sbjct: 82  ISQEPI---NYTDSDFYQKVDGKIISPYRIFLENNTNKENIDFFENVAKKKLGNETSLKK 138

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D +   IL+P+F + +L  +F+IGFL+ LPF+ ID+I++ I++A+GMMM+ P +IS+PFK
Sbjct: 139 DSL--FILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFK 196

Query: 225 VIFFVLIDGWSLLVE 239
           ++ F+LI GW  L E
Sbjct: 197 ILLFILIGGWQKLFE 211


>gi|212702682|ref|ZP_03310810.1| hypothetical protein DESPIG_00710 [Desulfovibrio piger ATCC 29098]
 gi|212673954|gb|EEB34437.1| hypothetical protein DESPIG_00710 [Desulfovibrio piger ATCC 29098]
          Length = 218

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/201 (37%), Positives = 125/201 (62%), Gaps = 13/201 (6%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP-TLDRSIEMGI 111
           P LL+MVT + + ++V S++R  +G+  VPP +V+  LA+ +T ++M+P  +D    +  
Sbjct: 22  PFLLMMVTSYVKIVVVTSLVRNALGVQQVPPAMVMNGLAIILTVFIMAPVAMDTKALLEE 81

Query: 112 QPLMNN----QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKN 164
           Q    N    ++ ET  +Q V+ P   F+  NT    L  FM  A      H+   IT++
Sbjct: 82  QRFSANPKPSEMLET--LQAVSPPLRQFLEKNTSPAILQEFMGTAQRIWPEHQRQSITRD 139

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           +     IL+P+F I+EL ++F+IGFL+ LPF+ ID+I++ +++AMGMMM+ P +ISLPFK
Sbjct: 140 NLF---ILVPAFTITELTKAFQIGFLLYLPFVAIDLIISNVLLAMGMMMVSPMTISLPFK 196

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FV +DGW  + + L+ S+
Sbjct: 197 LLLFVTLDGWLKISQGLLLSY 217


>gi|167841181|ref|ZP_02467865.1| type III secretion system protein [Burkholderia thailandensis
           MSMB43]
          Length = 216

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/205 (38%), Positives = 125/205 (60%), Gaps = 14/205 (6%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT----LD 104
           LSI P+L+++ + F +  +VF++LR  +G   +PPN+ +  LAL +T ++M+P      D
Sbjct: 17  LSILPLLMVLGSSFLKLAVVFALLRNALGTQQIPPNIALYGLALVLTLFIMAPVGLAIQD 76

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSS----HRNTD 160
              E  +Q L + Q T+      +A P+  F+  NT    +  F D+ H +    +RN  
Sbjct: 77  NLAEHPVQ-LDDKQFTQQVETTILA-PYRDFLARNTARAQVRFFADIGHRTWPEPYRNR- 133

Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
           I  +  I   +LIP+F IS+L  +F+IG L+ LPF+ ID+IV+ +++AMGMMM+ P +I+
Sbjct: 134 IPDDSLI---VLIPAFAISQLIEAFKIGLLLFLPFVAIDLIVSNVLLAMGMMMVSPMTIA 190

Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245
           LP K++ FVLI+GW  L+  LV SF
Sbjct: 191 LPLKLLVFVLINGWEKLLGQLVLSF 215


>gi|1648936|gb|AAB17684.1| putative [Sinorhizobium fredii]
          Length = 249

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/195 (36%), Positives = 117/195 (60%), Gaps = 8/195 (4%)

Query: 56  LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115
           ++  T F +  +V  ++R  +G  ++PPN+V+ + AL +T +V +P  +++ +    P +
Sbjct: 52  VVTTTAFVKVSVVLFLVRNALGTQTIPPNIVLYAAALILTMFVSAPIAEQTYDRITDPRL 111

Query: 116 NNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYR 170
             Q  +    A +  ++P    ++  T E+    F+              +T +D   + 
Sbjct: 112 RYQSLDDWAEAAKAGSQPLLEHLKKFTNEEQRRFFLSSTEKVWPEEMRARVTADD---FA 168

Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230
           IL+PSF+ISEL+R+FEIGFL+ LPF++ID+IV TI+MAMGM M+ PT I++PFK+  FV 
Sbjct: 169 ILVPSFLISELKRAFEIGFLLYLPFIVIDLIVTTILMAMGMSMVSPTIIAVPFKLFLFVA 228

Query: 231 IDGWSLLVENLVKSF 245
           IDGWS L+  LV S+
Sbjct: 229 IDGWSRLMHGLVLSY 243


>gi|193062099|ref|ZP_03043195.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli E22]
 gi|192932319|gb|EDV84917.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli E22]
          Length = 217

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/200 (35%), Positives = 123/200 (61%), Gaps = 10/200 (5%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-L 103
           +F +LS+ PI +++ T F +  IV  IL+  +G+  VPPN+ + S++L +T ++MSP  L
Sbjct: 17  VFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIIL 76

Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
             +  +  +P+     T++   Q+V E    P+  F+  N  ++++  F   A     N 
Sbjct: 77  QINDNISQEPI---NYTDSDFFQKVDEKILSPYRGFLEKNIEKENVEFFERAAQKKLGNE 133

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            I K D +   IL+P+F + +L  +F+IGFL+ LPF+ ID+I++ I++A+GMMM+ P +I
Sbjct: 134 TILKKDSL--FILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTI 191

Query: 220 SLPFKVIFFVLIDGWSLLVE 239
           S+PFK++ F+L+ GW  L E
Sbjct: 192 SIPFKILLFILVGGWQKLFE 211


>gi|19749328|gb|AAL98698.1| Y4yL [Sinorhizobium fredii]
 gi|52631921|gb|AAU85371.1| RhcR [Sinorhizobium fredii]
          Length = 222

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/195 (36%), Positives = 117/195 (60%), Gaps = 8/195 (4%)

Query: 56  LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115
           ++  T F +  +V  ++R  +G  ++PPN+V+ + AL +T +V +P  +++ +    P +
Sbjct: 25  VVTTTAFVKVSVVLFLVRNALGTQTIPPNIVLYAAALILTMFVSAPIAEQTYDRITDPRL 84

Query: 116 NNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYR 170
             Q  +    A +  ++P    ++  T E+    F+              +T +D   + 
Sbjct: 85  RYQSLDDWAEAAKAGSQPLLEHLKKFTNEEQRRFFLSSTEKVWPEEMRARVTADD---FA 141

Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230
           IL+PSF+ISEL+R+FEIGFL+ LPF++ID+IV TI+MAMGM M+ PT I++PFK+  FV 
Sbjct: 142 ILVPSFLISELKRAFEIGFLLYLPFIVIDLIVTTILMAMGMSMVSPTIIAVPFKLFLFVA 201

Query: 231 IDGWSLLVENLVKSF 245
           IDGWS L+  LV S+
Sbjct: 202 IDGWSRLMHGLVLSY 216


>gi|194292014|ref|YP_002007921.1| type III secretion system protein [Cupriavidus taiwanensis LMG
           19424]
 gi|193225918|emb|CAQ71865.1| SctR: non flagellar T3S system inner membrane conserved protein.
           FliP/mopC/spaP family [Cupriavidus taiwanensis LMG
           19424]
          Length = 219

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/217 (36%), Positives = 135/217 (62%), Gaps = 22/217 (10%)

Query: 39  IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
           I+ TFGI      AP + +MVT + + +IVF +LR  +G+  VPPN+V+  +A+ +T Y+
Sbjct: 14  IILTFGI------APFVALMVTSYTKLVIVFGLLRAALGLQQVPPNMVLNGIAIILTAYI 67

Query: 99  MSP-------TLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           M+P        + R  +      +N+ +T   A   V+ P   F+  +T E++ + F+  
Sbjct: 68  MAPIGSDAFDAIKRRADANAAFNVNDVVTVYDA---VSGPLKEFLVKHTEERNRTFFVQS 124

Query: 152 AHS---SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
           A       R  D+  +D +   +LIPSF +SEL R+F+IGF++ L F+++D+IVA I++A
Sbjct: 125 AKRIWPEGRADDLKSDDMM---VLIPSFTLSELTRAFQIGFVVYLVFVVVDLIVAAILLA 181

Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +GM M+ PT+IS+PFK++ FV+++GW+ L++ LV S+
Sbjct: 182 LGMSMVAPTTISVPFKLLLFVMLEGWTQLIQGLVLSY 218


>gi|15833837|ref|NP_312610.1| type III secretion system protein [Escherichia coli O157:H7 str.
           Sakai]
 gi|13364058|dbj|BAB38006.1| type III secretion system EscR protein [Escherichia coli O157:H7
           str. Sakai]
          Length = 217

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/200 (36%), Positives = 122/200 (61%), Gaps = 10/200 (5%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-L 103
           +F +LS+ PI + + T F +  IV  IL+  +G+  VPPN+ + S++L +T ++MSP  L
Sbjct: 17  VFFLLSLLPIFVGIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIIL 76

Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
             +  +  +P+     T++   Q+V E    P+  F+  NT + ++  F   A     N 
Sbjct: 77  QINDNISQEPI---NYTDSDFFQKVDEKILSPYRGFLEKNTEKDNVEFFERAAQKKLGNE 133

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            I K D +   IL+P+F + +L  +F+IGFL+ LPF+ ID+I++ I++A+GMMM+ P +I
Sbjct: 134 TILKKDSL--FILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTI 191

Query: 220 SLPFKVIFFVLIDGWSLLVE 239
           S+PFK++ F+L+ GW  L E
Sbjct: 192 SIPFKILLFILVGGWQKLFE 211


>gi|294141001|ref|YP_003556979.1| type III secretion system EscR protein [Shewanella violacea DSS12]
 gi|293327470|dbj|BAJ02201.1| type III secretion system EscR protein [Shewanella violacea DSS12]
          Length = 216

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/201 (35%), Positives = 124/201 (61%), Gaps = 6/201 (2%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP-TLDRSI 107
           LSI P+  +M T F +  IV S+LR  +G+  +PPN+ I  L+L +T ++M+P  ++ + 
Sbjct: 17  LSILPLFAVMGTSFLKLSIVLSMLRNALGIQQIPPNMAIYGLSLILTLFIMAPIGMEIND 76

Query: 108 EMGIQPLMNNQITETTAIQRVAE-PFWVFMRNNTREKDLSLFMDMAHSS--HRNTDITKN 164
            + + P++ +       +  +A  P+  F+  NT +  L  F ++ H +   +  D+   
Sbjct: 77  NLKVHPIVFDSANIIEQVNTLAIIPYRDFLEKNTSKTQLDFFANIGHKTWPDKYQDVLSK 136

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D +   +++P+F +S+L  +F+IG LI LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK
Sbjct: 137 DSL--FVMLPAFTMSQLIEAFKIGLLIYLPFVAIDLIVSNILLAMGMMMVSPMTISLPFK 194

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ F+L+ GW  LV  L+ SF
Sbjct: 195 LLIFILMGGWEKLVSQLMVSF 215


>gi|2865276|gb|AAC38369.1| EscR [Escherichia coli]
          Length = 217

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 71/200 (35%), Positives = 122/200 (61%), Gaps = 10/200 (5%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-L 103
           +F +LS+ PI +++ T F +  IV  IL+  +G+  VPPN+ + S++L +T ++MSP  L
Sbjct: 17  VFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIIL 76

Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
             +  +  +P+     T++   Q+V E    P+   +  NT + ++  F   A     N 
Sbjct: 77  QINDNISQEPI---NYTDSDFFQKVDEKILSPYRGILEKNTEKDNVEFFERAAQKKLGNE 133

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            I K D +   IL+P+F + +L  +F+IGFL+ LPF+ ID+I++ I++A+GMMM+ P +I
Sbjct: 134 TILKKDSL--FILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTI 191

Query: 220 SLPFKVIFFVLIDGWSLLVE 239
           S+PFK++ F+L+ GW  L E
Sbjct: 192 SIPFKILLFILVGGWQKLFE 211


>gi|312884595|ref|ZP_07744299.1| type III secretion system protein [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367907|gb|EFP95455.1| type III secretion system protein [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 216

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/208 (34%), Positives = 124/208 (59%), Gaps = 20/208 (9%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT------ 102
           LS+ P+  +M T F +  IV S+LR  +G+  +PPN+ I  LAL +T + M+P       
Sbjct: 17  LSLLPLFAVMGTSFLKLSIVLSMLRNALGIQQIPPNMAIYGLALILTMFTMAPVGMAIRD 76

Query: 103 --LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHR 157
                 +E    P + +QI+E     +V  P++ F+ +NT +K +  F  + H       
Sbjct: 77  NLAAHPVEWA-SPDVFHQISE-----QVIAPYYKFLSHNTSDKQIQFFSQIGHKIWPEQY 130

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
             +++K   +   +++P+F +S+L  +F+IGFL+ LPF+ ID++V+ I++AMGMMM+ P 
Sbjct: 131 QHELSKESLL---VMVPAFTMSQLIEAFKIGFLLYLPFVAIDLVVSNILLAMGMMMVSPM 187

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +I+LPFK++ F+L+ GW  L+  L+ SF
Sbjct: 188 TIALPFKLLIFILMGGWDKLIGQLMGSF 215


>gi|284007639|emb|CBA73298.1| type III secretion inner membrane protein YscR,SpaR,HrcR,EscR
           [Arsenophonus nasoniae]
          Length = 209

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 75/203 (36%), Positives = 123/203 (60%), Gaps = 10/203 (4%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108
           LSI P+  +M T F +  IV S+LR  +G+  +PPN+ I  LAL +T + M+P +  +I 
Sbjct: 10  LSIMPLFAVMGTSFLKISIVLSMLRNALGIQQIPPNMAIYGLALILTLFTMAP-VGFAIR 68

Query: 109 MGI--QPLMNNQITETTAIQR-VAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDIT 162
             I  QP+  N +     I   V  P+  F++ NT E+ +  F  + +        T ++
Sbjct: 69  DNIKAQPIDWNSVNSMEQIDSSVITPYRDFLKKNTSEEQIKFFTQIGYKIWPKQYQTSLS 128

Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
            N  +   +++P+F +S+L  +F+IGFLI LPF+ ID+IV+ +++AMGMMM+ P +I+LP
Sbjct: 129 PNSLL---VMVPAFTMSQLIAAFKIGFLIYLPFVAIDLIVSNVLLAMGMMMVSPMTIALP 185

Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245
           FK++ F+L+ GW  L+  L+ SF
Sbjct: 186 FKLLIFILMGGWDKLIGQLMVSF 208


>gi|13475305|ref|NP_106869.1| type III secretion system protein [Mesorhizobium loti MAFF303099]
 gi|14026056|dbj|BAB52655.1| translocation protein in type III secretion system; HrcR
           [Mesorhizobium loti MAFF303099]
          Length = 221

 Score =  132 bits (333), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 69/187 (36%), Positives = 114/187 (60%), Gaps = 2/187 (1%)

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F +  +V  ++R  +G  ++PPN+ + ++AL +T ++ +P ++++ +    P ++ Q  
Sbjct: 30  AFVKVSVVLFLVRNALGTQTIPPNIALYAVALILTMFLSAPVVEQTYDRMTDPKLHYQTF 89

Query: 121 E--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           +   +A +  +EP    ++  T E+    F+             K    +  IL+PSF+I
Sbjct: 90  DDWVSAAKSGSEPLRDHLKKFTNEEQRQFFLSSTEKVWPAEMRAKATVDDLSILVPSFLI 149

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+R+FEIGFL+ LPF++ID+IV TI+MAMGM M+ PT IS+PFK+  FV IDGWS L+
Sbjct: 150 SELKRAFEIGFLLYLPFIVIDLIVTTILMAMGMSMVSPTLISVPFKLFVFVAIDGWSKLM 209

Query: 239 ENLVKSF 245
             LV S+
Sbjct: 210 HGLVLSY 216


>gi|34498062|ref|NP_902277.1| type III secretion system protein [Chromobacterium violaceum ATCC
           12472]
 gi|34332839|gb|AAQ60277.2| type III secretion system EscR protein [Chromobacterium violaceum
           ATCC 12472]
          Length = 216

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 73/205 (35%), Positives = 124/205 (60%), Gaps = 14/205 (6%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP-TLDRSI 107
           LSI P+L+++ T F +  +VF++LR  +G+  +PPN+ +  LAL +T ++M+P  L+   
Sbjct: 17  LSILPLLVVLGTSFLKLAVVFALLRNALGIQQIPPNIALYGLALILTLFIMAPIGLEIQD 76

Query: 108 EMGIQPLMNNQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHS---SHRNTD 160
            +   P+   +I     IQ+V      P+ VF+  NT  + +  F D+ H          
Sbjct: 77  NLIAHPI---KIESPAFIQQVESGVFTPYRVFLERNTAPEQVHFFADIGHQIWPEKYQQR 133

Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
           I  N  +   +L+P+F +S+L  +F+IG L+ LPF+ ID++V+ +++AMGMMM+ P +IS
Sbjct: 134 IPDNSLL---VLMPAFTVSQLIEAFKIGLLLFLPFVAIDLVVSNVLLAMGMMMVSPMTIS 190

Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245
           +P K++ FVL++GW  L+  LV SF
Sbjct: 191 MPLKLLVFVLMNGWEKLLGQLVLSF 215


>gi|254511334|ref|ZP_05123401.1| flagellar biosynthetic protein FliP [Rhodobacteraceae bacterium
           KLH11]
 gi|221535045|gb|EEE38033.1| flagellar biosynthetic protein FliP [Rhodobacteraceae bacterium
           KLH11]
          Length = 146

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 64/148 (43%), Positives = 93/148 (62%), Gaps = 3/148 (2%)

Query: 99  MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
           M P    + E GIQP++   +    A++R   PF  FM       D   F  MA      
Sbjct: 1   MEPVFSEAWEAGIQPMVEETLDVEPALERALVPFRSFMAARL---DADTFQAMAALRPDG 57

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
           T +  +      +L+PSFM+SE+ R+F+IGFLI LPFLIID++VA ++M+MGMMM+PP +
Sbjct: 58  TQMQLSPEAPLSVLMPSFMLSEIARAFQIGFLIFLPFLIIDLVVAAVLMSMGMMMVPPAT 117

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +SLPFK+ FFV+ DGW+L+   LV+S++
Sbjct: 118 VSLPFKLAFFVIADGWALIASALVRSYV 145


>gi|260775667|ref|ZP_05884563.1| YYop virulence translocation protein R [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608083|gb|EEX34252.1| YYop virulence translocation protein R [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 216

 Score =  132 bits (332), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 124/206 (60%), Gaps = 14/206 (6%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD---- 104
           +S+ P++ I  T F +  +V  I+R  +G+  VPP++ + S+AL  TF+VM+P       
Sbjct: 17  MSLIPLMFITTTAFLKIAMVLMIVRNALGVQQVPPSMAVYSIALAATFFVMAPVFSEIQN 76

Query: 105 --RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS--SHRNTD 160
             +  E G   L  +QI ET  I R+  P   FM +N   +        A      R + 
Sbjct: 77  SVKGTESG--ALNEDQIVET--IDRIKTPLMGFMASNVDTQISERLKSTAREMWPARMSQ 132

Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
              N+   + IL+PSF+ISEL+  F+IGFLI +PF++ID+IV+ I++A+GM M+ P +++
Sbjct: 133 SMTNES--FFILLPSFVISELQAGFKIGFLIYIPFVVIDLIVSNILLALGMQMVAPITVT 190

Query: 221 LPFKVIFFVLIDGWSLLVENLVKSFI 246
           +P K++ FVL+DGW+ L+E+L+ +++
Sbjct: 191 VPIKILLFVLVDGWAKLLESLIYTYL 216


>gi|326794362|ref|YP_004312182.1| Yop virulence translocation R [Marinomonas mediterranea MMB-1]
 gi|326545126|gb|ADZ90346.1| Yop virulence translocation R [Marinomonas mediterranea MMB-1]
          Length = 217

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 75/212 (35%), Positives = 120/212 (56%), Gaps = 26/212 (12%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108
           LS+ PI+LI+ + F +  +V  I R  MG+  VPPN+ I  +AL  T +VM+P       
Sbjct: 18  LSLLPIMLIVCSAFLKISMVLMITRNAMGVQQVPPNMAIYGIALAATMFVMAPVFSD--- 74

Query: 109 MGIQPLMNNQITET-----------TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS--- 154
                 + N++ ET           T+  ++  P   FM  N+     +  MD       
Sbjct: 75  ------IGNKVKETPPDFSSLEGMQTSANKIVGPLQAFMSRNSNPDVTTHMMDNTARLWP 128

Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
               + +TK+D +   I+IPSFM+SEL+   +IGFLI +PF++ID+IV+ +++A+GM M+
Sbjct: 129 KEMASKVTKDDLM---IVIPSFMLSELKAGLQIGFLIYIPFIVIDLIVSNLLLALGMQMV 185

Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
            P +ISLP K++ FVL+DGW  L++ L  ++I
Sbjct: 186 SPMTISLPLKILLFVLVDGWGRLLDGLFYTYI 217


>gi|296162490|ref|ZP_06845281.1| Yop virulence translocation R [Burkholderia sp. Ch1-1]
 gi|295887303|gb|EFG67130.1| Yop virulence translocation R [Burkholderia sp. Ch1-1]
          Length = 211

 Score =  132 bits (331), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 72/207 (34%), Positives = 119/207 (57%), Gaps = 4/207 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++T  +F +L + P+ + M T F +F IV ++LR+ +G+   P NLVI  LAL  T  VM
Sbjct: 8   LQTISLFFMLGLMPLAVAMTTSFTKFSIVLTLLRSALGVQQAPSNLVISGLALAATLVVM 67

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +PT+ + IE  +          T  +Q V  P   FM  ++R  +    +  A       
Sbjct: 68  APTISK-IEAALDNGDGAMPRATELLQAVRGPLGDFMLKHSRADERQFLVGAAKRIDPER 126

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           +  + D    ++LIP+F+ISE+   FE GFL+ + FL++D++VA ++ AMGMMML P+++
Sbjct: 127 EARETD---MQLLIPAFLISEISSGFEAGFLLYIAFLVVDLVVANVLSAMGMMMLSPSTV 183

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
           S+P K+  FV + G S L+  L+ S++
Sbjct: 184 SIPLKLFIFVSVSGMSKLMHGLIVSYV 210


>gi|238023706|ref|YP_002907938.1| type III secretion system protein [Burkholderia glumae BGR1]
 gi|237878371|gb|ACR30703.1| Type III secretion-associated protein [Burkholderia glumae BGR1]
          Length = 216

 Score =  132 bits (331), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 125/203 (61%), Gaps = 10/203 (4%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP---TLDR 105
           +S+ P + ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ ++ YVM+P      +
Sbjct: 17  ISLLPFVAMVVTSYAKVVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYVMAPIGMQASK 76

Query: 106 SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH---SSHRNTDIT 162
           S+E G Q           A     EPF  F+  +T+E++   F+  A       +   ++
Sbjct: 77  SLE-GQQLASQPSQALIQAFGAAREPFRAFLEKHTQEREKRFFLRSAAVVWPKEQAQQLS 135

Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
           ++D I   +L PSF +SEL  +F+IGFL+ + F+++D+I+A +++A+G+  + PT++++P
Sbjct: 136 EHDLI---VLAPSFTLSELTDAFKIGFLLYIAFIVVDLIIANVLLALGLNQVTPTNVAIP 192

Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245
           FK++ FV++DGWS L+  LV ++
Sbjct: 193 FKLLLFVVMDGWSTLIHGLVMTY 215


>gi|312602787|ref|YP_004022632.1| type III secretion inner membrane protein SctR [Burkholderia
           rhizoxinica HKI 454]
 gi|306431590|emb|CBK52142.1| type III secretion inner membrane protein SctR [Burkholderia
           rhizoxinica HKI 454]
 gi|312170101|emb|CBW77113.1| type III secretion inner membrane protein SctR [Burkholderia
           rhizoxinica HKI 454]
          Length = 230

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 124/206 (60%), Gaps = 16/206 (7%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108
           +S+ P++ +++T + + ++V S+LR  +G   VPPN+V+  +A+ ++ Y+M+P     I 
Sbjct: 31  ISVVPLVAVVITSYTKIVVVLSLLRNALGAQQVPPNMVLNGIAILVSLYIMAP-----IG 85

Query: 109 MGIQPLMNNQITETTAIQRV-------AEPFWVFMRNNTREKDLSLFMDMAHS--SHRNT 159
           M     + NQ    T  Q V        EPF  F++ +  +++   FM  A         
Sbjct: 86  MAAAKQLENQPNAGTPSQSVVQAFSAAQEPFRAFLKQHANKREKRFFMRTATVIWPKEVA 145

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           D  + D  ++ +L P+F +SEL  +F+IGFL+ + F++ID+I+A +++AMG+  + PT++
Sbjct: 146 DGLRED--DFIVLAPAFTLSELTDAFKIGFLLYITFVVIDLIIANVLLAMGLNQVMPTNV 203

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++PFK++ FV++DGWS L+  L+ ++
Sbjct: 204 AIPFKLLLFVVMDGWSTLIHGLILTY 229


>gi|82524597|ref|YP_406192.1| surface presentation of antigens protein SpaP [Shigella dysenteriae
           Sd197]
 gi|187734451|ref|YP_001883216.1| type III secretion apparatus protein, YscR/HrcR family [Shigella
           boydii CDC 3083-94]
 gi|32307046|gb|AAP79016.1| Spa24 [Shigella flexneri]
 gi|81243995|gb|ABB64704.1| Spa24 [Shigella dysenteriae Sd197]
 gi|187426947|gb|ACD06222.1| type III secretion apparatus protein, YscR/HrcR family [Shigella
           boydii CDC 3083-94]
 gi|320182865|gb|EFW57740.1| surface presentation of antigens protein SpaP [Shigella flexneri
           CDC 796-83]
          Length = 216

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 127/213 (59%), Gaps = 12/213 (5%)

Query: 39  IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
           ++ T   FT+L   P L+   TC+ +F IVF ++R  +G+  VP N+ +  +AL M  +V
Sbjct: 7   LIATLSFFTLL---PFLVAAGTCYIKFSIVFVMVRNALGLQQVPSNMTLNGIALIMALFV 63

Query: 99  MSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWV-FMRNNTREKDLSLFMDMAHSS 155
           M P     IE G +  +N   +    + I R ++   + + +   +  DL L      S 
Sbjct: 64  MKPI----IEAGYENYLNGPQKFDTISDIVRFSDSGLIEYKQYLKKHTDLELARFFQRSE 119

Query: 156 HRNTDITKNDHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
             N D+   ++ +Y +  L+P++ +SE++ +F+IGF + LPF+++D+++++I++A+GMMM
Sbjct: 120 EENADLKSAENNDYSLFSLLPAYALSEIKDAFKIGFYLYLPFIVVDLVISSILLALGMMM 179

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           + P +IS+P K++ FV +DGW +L + L++ +I
Sbjct: 180 MSPITISVPIKLVLFVALDGWGILSKALIEQYI 212


>gi|238757865|ref|ZP_04619047.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia
           aldovae ATCC 35236]
 gi|238703850|gb|EEP96385.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia
           aldovae ATCC 35236]
          Length = 215

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 68/192 (35%), Positives = 117/192 (60%), Gaps = 3/192 (1%)

Query: 57  IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
           +M T F +  +VFSILR  +G+  VPPN+ +  LAL ++ ++M+PT+  +++    P+ +
Sbjct: 25  VMGTSFLKLAVVFSILRNALGIQQVPPNMALYGLALVLSMFIMAPTV-LAVKAQWHPVAD 83

Query: 117 NQ--ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
               +  +        P+  F++ N+ EK+   F ++   +       +       IL+P
Sbjct: 84  ASTPVWMSGWDGHALGPYRQFLQKNSDEKEARYFRNLIAKTWPEDARRRVKPDSLLILLP 143

Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234
           +F +S+L ++F IG LI LPFL ID++V+ I++AMGMMM+ P +ISLPFK++ F+L  GW
Sbjct: 144 AFTVSQLTQAFRIGLLIYLPFLAIDLLVSNILLAMGMMMVSPMTISLPFKLLIFLLAGGW 203

Query: 235 SLLVENLVKSFI 246
            L++  LV+SF+
Sbjct: 204 DLILSQLVQSFV 215


>gi|307725660|ref|YP_003908873.1| Yop virulence translocation R [Burkholderia sp. CCGE1003]
 gi|307586185|gb|ADN59582.1| Yop virulence translocation R [Burkholderia sp. CCGE1003]
          Length = 216

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 126/202 (62%), Gaps = 8/202 (3%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108
           +S+ P + ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ ++ YVM+P   ++++
Sbjct: 17  ISLVPFVAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGVAILVSIYVMAPVGMQAMQ 76

Query: 109 MGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAH---SSHRNTDITK 163
                 +  Q T+          EPF  F++ +T E++   F+  A+        + + +
Sbjct: 77  SMQGQAIAGQPTQALIQVFSAAREPFRTFLQKHTNEREKRFFIRSANVVWPKEAASSLHE 136

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
           ND I   +L P+F ++EL  +F+IGFL+ + F++ID+I+A +++AMG+  + PT++++PF
Sbjct: 137 NDLI---VLAPAFTLTELTDAFKIGFLLYIAFIVIDLIIANVLLAMGLNQVTPTNVAIPF 193

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K++ FV++DGWS L+  LV ++
Sbjct: 194 KLLLFVVMDGWSTLIHGLVMTY 215


>gi|167567944|ref|ZP_02360860.1| type III secretion system protein [Burkholderia oklahomensis EO147]
 gi|167573182|ref|ZP_02366056.1| type III secretion system protein [Burkholderia oklahomensis C6786]
          Length = 216

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 124/204 (60%), Gaps = 4/204 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP--- 101
           I   +S+ P + ++VT + + ++V  +LR  +G+  VPPN+V+  +A+  + YVM+P   
Sbjct: 13  IVVAISLLPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILASLYVMAPVGM 72

Query: 102 TLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
              +S++ G Q    +      A+    EPF  F+  +T+E++   F+  A       + 
Sbjct: 73  QAAKSLD-GQQLASQSSQALIQALSAAREPFRAFLEKHTQEREKRFFIRSATVIWPKDEA 131

Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
           ++    +  +L P+F +SEL  +F+IGFL+ + F+I+D+++A +++A+G+  + PT++++
Sbjct: 132 SRLSEHDLVVLAPAFALSELTDAFKIGFLLYITFIIVDLVIANVLLALGLNQVTPTNVAI 191

Query: 222 PFKVIFFVLIDGWSLLVENLVKSF 245
           PFK++ FV++DGWS L+  LV ++
Sbjct: 192 PFKLLLFVVMDGWSALIHGLVMTY 215


>gi|330819399|ref|YP_004348261.1| Type III secretion inner membrane protein SctR [Burkholderia
           gladioli BSR3]
 gi|327371394|gb|AEA62749.1| Type III secretion inner membrane protein SctR [Burkholderia
           gladioli BSR3]
          Length = 216

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 124/203 (61%), Gaps = 10/203 (4%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP---TLDR 105
           +S+ P + ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ ++ YVM+P      +
Sbjct: 17  ISLLPFVAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSIYVMAPIGMQASK 76

Query: 106 SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH---SSHRNTDIT 162
           ++E G Q           A     EPF  F+  +T E++   F+  A       +   ++
Sbjct: 77  ALE-GQQLASQPSQALIQAFGAAKEPFRAFLVKHTAEREKRFFLRSAAVVWPKEQAQQLS 135

Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
           +ND I   +L PSF +SEL  +F+IGFL+ + F+++D+I+A +++A+G+  + PT++++P
Sbjct: 136 ENDLI---VLAPSFTLSELTDAFKIGFLLYIAFIVVDLIIANVLLALGLNQVTPTNVAIP 192

Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245
           FK++ FV++DGWS L+  LV ++
Sbjct: 193 FKLLLFVVMDGWSTLIHGLVMTY 215


>gi|254469150|ref|ZP_05082555.1| type III secretion apparatus protein, YscR/HrcR family
           [Pseudovibrio sp. JE062]
 gi|211960985|gb|EEA96180.1| type III secretion apparatus protein, YscR/HrcR family
           [Pseudovibrio sp. JE062]
          Length = 214

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 123/204 (60%), Gaps = 8/204 (3%)

Query: 48  ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS- 106
           ++++ P L I+ T F +  +V  ++R  +G+  +PPN+ + +LA+ ++ Y+M P   ++ 
Sbjct: 14  VVALVPFLAIVATSFIKLSVVLLLVRNALGVQQIPPNMALNALAIILSGYIMLPVFLQTF 73

Query: 107 --IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS--SHRNTDIT 162
             +E G   +   +  +TT +     P   F+  +   K+ + F++ +         D  
Sbjct: 74  EILEKGNYSIATVEDMKTTFVAAKG-PLEKFLAKHADSKEKAFFLEASRQLWPAEVADSM 132

Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
             D I   IL+P++ +S+LR +FEIGFL+ LPFL ID++V+ I++AMGMMM+ P +ISLP
Sbjct: 133 SADSIA--ILLPAYTVSQLREAFEIGFLLYLPFLAIDLVVSNILLAMGMMMVSPLTISLP 190

Query: 223 FKVIFFVLIDGWSLLVENLVKSFI 246
           FK+  FV +DGWS L+  L+K+++
Sbjct: 191 FKLFLFVAVDGWSRLILGLIKTYV 214


>gi|167467561|ref|ZP_02332265.1| type III secretion system protein [Yersinia pestis FV-1]
          Length = 333

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/191 (39%), Positives = 119/191 (62%), Gaps = 7/191 (3%)

Query: 48  ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRS 106
           +LS+ P+L++M T F +  +VFS+LR  +G+  VPPN+ I  LAL +T ++M+P  LD  
Sbjct: 36  MLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQ 95

Query: 107 IEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSS--HRNTDITK 163
             +  + L N+       I Q    P+  F++ NT  + ++ F D+  +    R  D  K
Sbjct: 96  ARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVK 155

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
            D +   IL+P+F +S+L  +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P ++SLPF
Sbjct: 156 PDSL--LILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPF 213

Query: 224 KVIFFVLIDGW 234
           K++ FVL  GW
Sbjct: 214 KLLVFVL-SGW 223


>gi|167572947|ref|ZP_02365821.1| type III secretion system protein [Burkholderia oklahomensis C6786]
          Length = 216

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/203 (35%), Positives = 123/203 (60%), Gaps = 10/203 (4%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRSI 107
           LSI P+L+++ T F +  +VF++LR  +G   +PPN+ +  LAL +T +VM+P  L    
Sbjct: 17  LSILPLLVVLGTSFLKLSVVFALLRNALGTQQIPPNIALHGLALVLTMFVMAPVGLAIQD 76

Query: 108 EMGIQPLMNNQITETTAIQR-VAEPFWVFMRNNTREKDLSLFMDMAHSS----HRNTDIT 162
            +   P+  +    T  +++ +  P+  F+  NT    +  F D+ H +    +RN  I 
Sbjct: 77  NLAAHPVRIDDKDFTQQVEKTILAPYRAFLERNTAPDQVRFFADVGHRTWPEPYRNR-IP 135

Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
            +  I   +L+P+F +S+L  +F+IG L+ LPF+ ID+IV+ +++AMGMMM+ P +I+LP
Sbjct: 136 DDSLI---VLLPAFTVSQLIEAFKIGLLLFLPFIAIDLIVSNVLLAMGMMMVSPMTIALP 192

Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245
            K++ FVLI GW  L+  L+ SF
Sbjct: 193 LKLLVFVLIHGWEKLIGQLLLSF 215


>gi|284006888|emb|CBA72157.1| type III secretion component protein SctR [Arsenophonus nasoniae]
          Length = 192

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/197 (37%), Positives = 115/197 (58%), Gaps = 16/197 (8%)

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           M T F +  +VFS+LR  +G+  +PPN+ I  L++ +T YVM+P     + +  +  +N 
Sbjct: 1   MATSFVKMAMVFSLLRNALGVQQIPPNMAIYGLSIILTLYVMAP-----VALATKDFLNE 55

Query: 118 QITETTA-------IQRVAEPFWVFMRN--NTREKDLSLFMDMAHSSHRNTDITKNDHIE 168
                +A        +   +P+  F+    N REK+        +   +  +   +D + 
Sbjct: 56  NPISLSANASLEYFFEEGTKPYKSFLTKHINPREKEFFNENIAKYWPAKYANSVSSDSL- 114

Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
             IL+P+F ISEL R+FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK++ F
Sbjct: 115 -FILLPAFTISELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISLPFKLLLF 173

Query: 229 VLIDGWSLLVENLVKSF 245
           V+ DGWS L   LV S+
Sbjct: 174 VMFDGWSRLSHGLVLSY 190


>gi|167568050|ref|ZP_02360966.1| type III secretion system protein [Burkholderia oklahomensis EO147]
          Length = 216

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/203 (35%), Positives = 123/203 (60%), Gaps = 10/203 (4%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRSI 107
           LSI P+L+++ T F +  +VF++LR  +G   +PPN+ +  LAL +T +VM+P  L    
Sbjct: 17  LSILPLLVVLGTSFLKLSVVFALLRNALGTQQIPPNIALHGLALVLTMFVMAPVGLAIQD 76

Query: 108 EMGIQPLMNNQITETTAIQR-VAEPFWVFMRNNTREKDLSLFMDMAHSS----HRNTDIT 162
            +   P+  +    T  +++ +  P+  F+  NT    +  F D+ H +    +RN  I 
Sbjct: 77  NLAAHPVGIDDKDFTQQVEKTILAPYRAFLERNTAPDQVRFFADVGHRTWPEPYRNR-IP 135

Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
            +  I   +L+P+F +S+L  +F+IG L+ LPF+ ID+IV+ +++AMGMMM+ P +I+LP
Sbjct: 136 DDSLI---VLLPAFTVSQLIEAFKIGLLLFLPFIAIDLIVSNVLLAMGMMMVSPMTIALP 192

Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245
            K++ FVLI GW  L+  L+ SF
Sbjct: 193 LKLLVFVLIHGWEKLIGQLLLSF 215


>gi|74314952|ref|YP_313370.1| surface presentation of antigens protein SpaP [Shigella sonnei
           Ss046]
 gi|73858429|gb|AAZ91135.1| Spa24 [Shigella sonnei Ss046]
          Length = 216

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 129/216 (59%), Gaps = 18/216 (8%)

Query: 39  IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
           ++ T   FT+L   P L+   TC+ +F IVF ++R  +G+  VP N+ +  +AL M  +V
Sbjct: 7   LIATLSFFTLL---PFLVAAGTCYIKFSIVFVMVRNALGLQQVPSNMTLNGIALIMALFV 63

Query: 99  MSPTLDRSIEMGIQPLMN--NQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMA 152
           M P     IE G +  +N   +    + I R ++     +  +++ +T   DL L     
Sbjct: 64  MKPI----IEAGYENYLNGPQKFDTISDIVRFSDSGLMEYKQYLKKHT---DLELARFFQ 116

Query: 153 HSSHRNTDITKNDHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
            S   N D+   ++ +Y +  L+P++ +SE++ +F+IGF + LPF+++D+++++I++A+G
Sbjct: 117 RSEEENADLKSAENNDYSLFSLLPAYALSEIKDAFKIGFYLYLPFVVVDLVISSILLALG 176

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           MMM+ P +IS+P K++ FV +DGW +L + L++ +I
Sbjct: 177 MMMMSPITISVPIKLVLFVALDGWGILSKALIEQYI 212


>gi|323530325|ref|YP_004232477.1| Yop virulence translocation R [Burkholderia sp. CCGE1001]
 gi|323387327|gb|ADX59417.1| Yop virulence translocation R [Burkholderia sp. CCGE1001]
          Length = 216

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 125/202 (61%), Gaps = 8/202 (3%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108
           +S+ P + ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ ++ YVM+P   ++++
Sbjct: 17  ISLVPFVAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGVAILVSLYVMAPVGMQAMQ 76

Query: 109 MGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAH---SSHRNTDITK 163
                 +  Q T+          EPF  F++ +T E++   F+  A+          + +
Sbjct: 77  SMQGQAIAGQPTQALIQVFSAAREPFRTFLQKHTNEREKRFFIRSANVVWPKDAAASLHE 136

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
           ND I   +L P+F ++EL  +F+IGFL+ + F++ID+I+A +++AMG+  + PT++++PF
Sbjct: 137 NDLI---VLAPAFTLTELTDAFKIGFLLYIAFIVIDLIIANVLLAMGLNQVTPTNVAIPF 193

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K++ FV++DGWS L+  LV ++
Sbjct: 194 KLLLFVVMDGWSTLIHGLVMTY 215


>gi|13449100|ref|NP_085316.1| Type III secretion protein [Shigella flexneri 5a]
 gi|31983543|ref|NP_858286.1| surface presentation of antigens protein SpaP [Shigella flexneri 2a
           str. 301]
 gi|60415913|sp|P0A1L3|SPAP_SHIFL RecName: Full=Surface presentation of antigens protein spaP;
           AltName: Full=Spa24 protein
 gi|60415914|sp|P0A1L4|SPAP_SHISO RecName: Full=Surface presentation of antigens protein spaP;
           AltName: Full=Spa24 protein
 gi|13310648|gb|AAK18472.1|AF348706_161 Type III secretion protein [Shigella flexneri 5a]
 gi|152795|gb|AAA26544.1| spa24 [Shigella flexneri]
 gi|303893|dbj|BAA02829.1| spa24 [Shigella flexneri]
 gi|829080|dbj|BAA09162.1| ORF22 [Shigella sonnei]
 gi|12329097|emb|CAC05828.1| Spa24, component of the Mxi-Spa secretion machinery [Shigella
           flexneri]
 gi|18462535|gb|AAL72307.1| Spa24, component of the Mxi-Spa secretion machinery [Shigella
           flexneri 2a str. 301]
 gi|281603908|gb|ADA76891.1| surface presentation of antigens protein SpaP [Shigella flexneri
           2002017]
          Length = 216

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 129/216 (59%), Gaps = 18/216 (8%)

Query: 39  IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
           ++ T   FT+L   P L+   TC+ +F IVF ++R  +G+  VP N+ +  +AL M  +V
Sbjct: 7   LIATLSFFTLL---PFLVAAGTCYIKFSIVFVMVRNALGLQQVPSNMTLNGIALIMALFV 63

Query: 99  MSPTLDRSIEMGIQPLMN--NQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMA 152
           M P     IE G +  +N   +    + I R ++     +  +++ +T   DL L     
Sbjct: 64  MKPI----IEAGYENYLNGPQKFDTISDIVRFSDSGLMEYKQYLKKHT---DLELARFFQ 116

Query: 153 HSSHRNTDITKNDHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
            S   N D+   ++ +Y +  L+P++ +SE++ +F+IGF + LPF+++D+++++I++A+G
Sbjct: 117 RSEEENADLKSAENNDYSLFSLLPAYALSEIKDAFKIGFYLYLPFVVVDLVISSILLALG 176

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           MMM+ P +IS+P K++ FV +DGW +L + L++ +I
Sbjct: 177 MMMMSPITISVPIKLVLFVALDGWGILSKALIEQYI 212


>gi|5679188|gb|AAD46902.1|AF160974_5 HrcR homolog [Xanthomonas campestris pv. glycines]
          Length = 201

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 118/203 (58%), Gaps = 8/203 (3%)

Query: 48  ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107
           +L + P   ++VT + + ++V  +LR  +G+  VPPN+V+  +AL ++ +VM+P    + 
Sbjct: 1   MLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF 60

Query: 108 EMGIQPLMNNQITETTAI--QRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDIT 162
           +   Q            +      EPF  F+  +TRE++ + FM  A       +   + 
Sbjct: 61  KAAAQNYGAGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLK 120

Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
            +D +   +L P+F +SEL  +F IGFL+ L F++ID++VA  +MAMG+  + PT++++P
Sbjct: 121 SDDLL---VLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIP 177

Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245
           FK++ FV +DGWS+L+  LV S+
Sbjct: 178 FKLLLFVAMDGWSMLIHGLVLSY 200


>gi|213162230|ref|ZP_03347940.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 190

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/194 (36%), Positives = 114/194 (58%), Gaps = 11/194 (5%)

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL----DR--SIEMGI 111
           M T F +  +VFSILR  +G+  VPPN+ +   AL ++ ++M PTL    +R   +++  
Sbjct: 1   MGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKERWHPVQVAG 60

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
            P   ++        +   P+  F++ N+ EK+ + F ++   +       K       I
Sbjct: 61  APFWTSEWDS-----KALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLI 115

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           LIP+F +S+L ++F IG LI LPFL ID++++ I++AMGMMM+ P +ISLPFK++ F+L 
Sbjct: 116 LIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLA 175

Query: 232 DGWSLLVENLVKSF 245
            GW L +  LV+SF
Sbjct: 176 GGWDLTLAQLVQSF 189


>gi|224825752|ref|ZP_03698856.1| flagellar biosynthetic protein FliP [Lutiella nitroferrum 2002]
 gi|224601976|gb|EEG08155.1| flagellar biosynthetic protein FliP [Lutiella nitroferrum 2002]
          Length = 252

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/215 (37%), Positives = 127/215 (59%), Gaps = 7/215 (3%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P D ++ T I+    I T+L + P+L++M+T F RF+IV S+LR  +G+    PN ++  
Sbjct: 41  PVDFTVKTQILI---IMTLLGLLPVLMLMMTSFTRFVIVLSLLRQALGLQQGLPNRLVTG 97

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           +AL +T  VM P         + P   ++IT   A+    +P   FM   T +  L+   
Sbjct: 98  VALILTLLVMRPVGLEVWNKAMLPFDQDKITMQQALDVAQQPISRFMLAQTSKAALA--- 154

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
            +A  S         DH  + + + +F++SEL+ +F+IG ++ +PFL+ID++V++++MAM
Sbjct: 155 QVAKLSGEENVARPQDH-AFAVKLAAFVLSELKTAFQIGCMLFIPFLVIDLVVSSVLMAM 213

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           GMMML P  ISLP K++ FVL+DGWSL V  LV S
Sbjct: 214 GMMMLSPLVISLPLKLLMFVLVDGWSLTVNTLVTS 248


>gi|332526333|ref|ZP_08402460.1| type III secretion system protein YscR [Rubrivivax benzoatilyticus
           JA2]
 gi|332110470|gb|EGJ10793.1| type III secretion system protein YscR [Rubrivivax benzoatilyticus
           JA2]
          Length = 220

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/207 (36%), Positives = 119/207 (57%), Gaps = 12/207 (5%)

Query: 48  ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT----L 103
           +L++AP + +MVT F + ++V S+LR  +G+  VPPN+V+  +AL ++ YVM P      
Sbjct: 17  LLALAPFVGVMVTSFTKIVVVLSLLRNALGLQQVPPNVVLNGMALVLSIYVMYPVGLQMA 76

Query: 104 DRSIEMGIQPLMNNQITETTAIQRV--AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
           +R  +   Q     + TE          EP   F+  ++   +   F++   +  RN   
Sbjct: 77  ERVGQSQSQSQAAGRGTEALLAAADAAKEPLREFLIQHSNPDERRFFLE---TLRRNLSP 133

Query: 162 TKNDHIEYRILIPSFMI---SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
            +   +  R L+        +EL  +F+IGFLI LPFL+ID++V+ I+MA+GMMML PT+
Sbjct: 134 AQQQALSERDLVVVVPAFVVNELSVAFQIGFLIFLPFLVIDLVVSNILMALGMMMLSPTT 193

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +SLPFK++ FVL+DGW  L   LV S+
Sbjct: 194 VSLPFKLLLFVLVDGWVKLSHGLVLSY 220


>gi|238918894|ref|YP_002932408.1| type III secretion system protein [Edwardsiella ictaluri 93-146]
 gi|238868462|gb|ACR68173.1| type III secretion apparatus protein, YscR/HrcR family, putative
           [Edwardsiella ictaluri 93-146]
          Length = 215

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 119/196 (60%), Gaps = 11/196 (5%)

Query: 56  LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115
           ++M T F +  +VF++LR  +G+  +PPNL +  LAL +T ++M+P     +   +Q  +
Sbjct: 24  IVMGTSFLKLSVVFALLRNALGIQQIPPNLALYGLALILTLFIMTP-----VGTAVQARL 78

Query: 116 NNQ--ITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169
            +     +TT + R+++    P+  F+R +T  K L  F  +A  S   +   K      
Sbjct: 79  ADAPAQAQTTLLSRLSDNTLDPYRQFLRQHTSAKQLKFFRQVATKSWPASVREKISDNSL 138

Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
            +L+P+F +S+L  +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +IS+PFK++ F+
Sbjct: 139 LLLMPAFAVSQLVEAFQIGLLLFLPFIAIDLIVSNILLAMGMMMVSPMTISMPFKLLVFI 198

Query: 230 LIDGWSLLVENLVKSF 245
           L+ GW  ++  L+ S+
Sbjct: 199 LVGGWDKILGQLLLSY 214


>gi|160875390|ref|YP_001554706.1| type III secretion system protein [Shewanella baltica OS195]
 gi|160860912|gb|ABX49446.1| Yop virulence translocation R [Shewanella baltica OS195]
 gi|315267590|gb|ADT94443.1| Yop virulence translocation R [Shewanella baltica OS678]
          Length = 216

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 70/202 (34%), Positives = 121/202 (59%), Gaps = 8/202 (3%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRSI 107
           LS+ P+  +M T F +  IVFS+LR  +G+  +PPN+ I  LAL +T + M+P  +  + 
Sbjct: 17  LSLLPLFAVMGTSFLKLAIVFSMLRNALGIQQIPPNMAIYGLALILTLFTMAPVGMAIND 76

Query: 108 EMGIQPLMNN--QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS--SHRNTDITK 163
            +   P++ +   + E    + +A P+  F+  NT    +  F ++ H     +   +  
Sbjct: 77  NLKATPIVFDAPNVFEQINTEAIA-PYRAFLEKNTSNTQIEFFANIGHKVWPEKYQQVLT 135

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
            D +   +++P+F +S+L  +F+IG LI LPF+ ID+IV+ I++AMGMMM+ P +I+LPF
Sbjct: 136 KDSL--LVMVPAFTMSQLIEAFKIGLLIYLPFVAIDLIVSNILLAMGMMMVSPMTIALPF 193

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K++ F+L+ GW  L+  L+ SF
Sbjct: 194 KLLIFILMGGWEKLISQLMMSF 215


>gi|1346805|sp|P37828|PRO2_XANCG RecName: Full=Pathogenicity-related ORF2
 gi|901847|gb|AAA69968.1| pathogenicity protein [Xanthomonas campestris]
          Length = 216

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 118/203 (58%), Gaps = 8/203 (3%)

Query: 48  ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107
           +L + P   ++VT + + ++V  +LR  +G+  VPPN+V+  +AL ++ +VM+P    + 
Sbjct: 16  MLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF 75

Query: 108 EMGIQPLMNNQITETTAI--QRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDIT 162
           +   Q            +      EPF  F+  +TRE++ + FM  A       +   + 
Sbjct: 76  KAAAQNYGAGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLK 135

Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
            +D +   +L P+F +SEL  +F IGFL+ L F++ID++VA  +MAMG+  + PT++++P
Sbjct: 136 SDDLL---VLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIP 192

Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245
           FK++ FV +DGWS+L+  LV S+
Sbjct: 193 FKLLLFVAMDGWSMLIHGLVLSY 215


>gi|330812430|ref|YP_004356892.1| type III secretion protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|312597801|gb|ADQ89916.1| RscR [Pseudomonas fluorescens]
 gi|327380538|gb|AEA71888.1| putative type III secretion protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 217

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 126/204 (61%), Gaps = 10/204 (4%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108
           +S+ P+LLI+ + F +  IV +I R  +G+  VPPN+ + ++AL  T ++M+P      E
Sbjct: 18  ISLVPLLLIICSAFLKIAIVLTITRNAIGVQQVPPNMALYAIALAATLFIMAPVGHNIAE 77

Query: 109 -MGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDIT 162
            +  +PL   N +  + +A+  + +P   FM  NT    L+  ++         R    +
Sbjct: 78  QVKERPLDFSNTEALQGSALNAI-KPLQAFMSRNTNPDILAHLLENTQRMWPKERAEQAS 136

Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
           ++D +   +LIP+FM+SEL   F++GFLI +PF++ID+IV+ +++A+GM M+ P +ISLP
Sbjct: 137 RDDLM---LLIPAFMLSELEAGFQMGFLIYIPFIVIDLIVSNLLLALGMQMVAPMTISLP 193

Query: 223 FKVIFFVLIDGWSLLVENLVKSFI 246
            K++ FVL+ GW+ L+++L  S++
Sbjct: 194 LKLLIFVLVQGWTQLLDSLFYSYL 217


>gi|222082189|ref|YP_002541554.1| type III secretion system protein [Agrobacterium radiobacter K84]
 gi|221726868|gb|ACM29957.1| type III secretion apparatus protein, YscR/HrcR family
           [Agrobacterium radiobacter K84]
          Length = 218

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 69/199 (34%), Positives = 121/199 (60%), Gaps = 2/199 (1%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108
           +SI P++ ++ T F +  +V  I+R  +G+   PPNL++ ++A+ ++ +VM+P L +  +
Sbjct: 18  ISILPVIAVVATSFTKIAVVLLIVRNAIGIQQTPPNLLVFAIAIVLSAFVMNPILQQCWQ 77

Query: 109 MGIQPLMN-NQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
           + ++  ++ + I    A +  V  P   FM   + E+    F++ +     +T       
Sbjct: 78  VLLRADVHFDTINGLAAGLSEVGAPLKAFMMKFSDEEVRQFFVNSSQRIWGDTATLPASP 137

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
            +  +L PSF++SEL R+FEIGFL+ LPFL+ID  V+ I++A+GM M+ PT +S PFK++
Sbjct: 138 DDITVLTPSFLVSELTRAFEIGFLLYLPFLMIDFAVSAILVALGMQMMSPTVVSTPFKLL 197

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FV +DGW  L+E LV S+
Sbjct: 198 LFVGVDGWRRLLEGLVLSY 216


>gi|82470758|gb|ABB77410.1| HrcR [Pantoea stewartii subsp. stewartii]
          Length = 217

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/214 (35%), Positives = 132/214 (61%), Gaps = 15/214 (7%)

Query: 42  TFGIF-TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100
           TF +F   LS+ PIL+I+ TCF +  +V  I R  +G+  VPPN+ +  +AL  T +VM+
Sbjct: 10  TFALFLGALSLIPILMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMA 69

Query: 101 PTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR- 157
           P  ++  +   Q   +  N     T+I     P   FM +NT   D  + + +  +S R 
Sbjct: 70  PVFNQMQQQFSQAPADFSNVDNLRTSITNGVTPLQKFMAHNT---DPDILIHLQENSVRM 126

Query: 158 -----NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
                + +I+K++ +   ++IP+F++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM 
Sbjct: 127 WPKSMSENISKDNLL---LVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQ 183

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           M+ P ++SLP K++ FVLI+GW+ L++ L  S++
Sbjct: 184 MVAPMTLSLPLKMLLFVLINGWTRLLDGLFYSYL 217


>gi|76152316|gb|ABA39817.1| HrcR [Erwinia pyrifoliae]
          Length = 217

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 73/211 (34%), Positives = 129/211 (61%), Gaps = 9/211 (4%)

Query: 42  TFGIF-TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100
           TF +F   LS+ P+L+I+ TCF +  +V  I R  +G+  VPPN+ +  +AL  T +VM+
Sbjct: 10  TFALFLGALSLIPMLMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMA 69

Query: 101 PTLDRSIEMGIQ--PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
           P  ++  +   Q    +++     T++     P   FM +NT   D  + + +  +S R 
Sbjct: 70  PVFNQMQQQFSQVPADLSSMDNLKTSVSNGVAPLQKFMTHNT---DPDILIHLQENSVRM 126

Query: 159 TDITKNDHIEYR---ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
                +D +  R   ++IP+F++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ 
Sbjct: 127 WPKEMSDSVSKRHVLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVA 186

Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           P ++SLP K++ FVLI+GW+ L++ L  S++
Sbjct: 187 PMTLSLPLKMLLFVLINGWTRLLDGLFYSYL 217


>gi|323143897|ref|ZP_08078559.1| type III secretion apparatus protein, YscR/HrcR family
           [Succinatimonas hippei YIT 12066]
 gi|322416324|gb|EFY06996.1| type III secretion apparatus protein, YscR/HrcR family
           [Succinatimonas hippei YIT 12066]
          Length = 222

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 127/206 (61%), Gaps = 10/206 (4%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
            ++ + P  L + T + + I+V  ++R  +G+  VPP +V+  LA+ ++ +VM+P   ++
Sbjct: 18  ALMGLVPFFLTLATSYIKIIVVIYLIRNALGIQQVPPGMVLSGLAMILSIFVMAPVGVKT 77

Query: 107 IEMGIQPLMNNQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHS---SHRNT 159
            ++  Q  ++   T    +  +A+    P   F+++NT E+ L+ F + A        + 
Sbjct: 78  YDLLQQQDVSTVETSPYNVLEIADNVSGPLKDFLQHNTDERILNAFTNTAQRIWPQEIHN 137

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            I+K+  I    +IPSF+ISEL ++F+IGFL+ LPF+ ID+I++ I++AMGMMM+ P +I
Sbjct: 138 VISKDSLI---FIIPSFVISELTKAFQIGFLLYLPFIAIDLIISNILLAMGMMMVSPMTI 194

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FV +DGW  L + L+ S+
Sbjct: 195 SLPFKLMLFVTLDGWLKLSQGLLYSY 220


>gi|91782703|ref|YP_557909.1| type III secretion system protein [Burkholderia xenovorans LB400]
 gi|91686657|gb|ABE29857.1| Putative type III secretion protein, YscR-like protein
           [Burkholderia xenovorans LB400]
          Length = 211

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 72/207 (34%), Positives = 119/207 (57%), Gaps = 6/207 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   +F +L + P+ + M T F +F IV ++LR+ +G+   P NLVI  +AL  T  VM
Sbjct: 8   LQNISLFFMLGLLPLAVAMTTSFTKFSIVLTLLRSALGVQQAPSNLVISGMALAATLVVM 67

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +PTL + IE  +          T  +Q V  P   FM  ++R ++    +    S+ +  
Sbjct: 68  APTLSK-IEAALDTGDGAMPRPTELVQAVRGPLGEFMLKHSRLEERQFLV----SAAKRI 122

Query: 160 DITKNDH-IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
           D     H  + ++LIP+F+ISE+   FE GFL+ + FL++D++VA ++ AMGMMML P++
Sbjct: 123 DPEHEAHDTDLQLLIPAFLISEISSGFEAGFLLYIAFLVVDLVVANVLSAMGMMMLSPST 182

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +S+P K+  FV   G S L+  L+ S+
Sbjct: 183 VSIPLKLFIFVSASGMSKLMHGLIVSY 209


>gi|260778660|ref|ZP_05887552.1| yop virulence translocation protein R [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260604824|gb|EEX31119.1| yop virulence translocation protein R [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 216

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 69/212 (32%), Positives = 128/212 (60%), Gaps = 10/212 (4%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   +   +S+ P+  +M T F +  IV S+LR  +G+  +PPN+ I  LAL +T + M
Sbjct: 8   IQLIAVLFFMSLLPLFAVMGTSFLKLSIVLSMLRNALGIQQIPPNMAIYGLALILTMFTM 67

Query: 100 SPT-LDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS-- 154
           +P  L     +   P+   + ++    + Q +A P+  F+ +NT +  +  F ++ H   
Sbjct: 68  APVGLAIRDNLAAHPVDWASPEVFSQISDQIIA-PYHQFLSHNTSDTQIQFFSEIGHKIW 126

Query: 155 -SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
                ++++K+  +   +++P+F +S+L  +F+IGFL+ LPF+ ID+IV+ I++AMGMMM
Sbjct: 127 PEQYQSELSKDSLL---VMVPAFTMSQLIEAFKIGFLLYLPFVAIDLIVSNILLAMGMMM 183

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           + P +I+LPFK++ F+L+ GW  L+  L+ SF
Sbjct: 184 VSPMTIALPFKLLIFILMGGWDKLIGQLMGSF 215


>gi|126174198|ref|YP_001050347.1| type III secretion system protein [Shewanella baltica OS155]
 gi|304408581|ref|ZP_07390202.1| Yop virulence translocation R [Shewanella baltica OS183]
 gi|307305409|ref|ZP_07585157.1| Yop virulence translocation R [Shewanella baltica BA175]
 gi|125997403|gb|ABN61478.1| Yop virulence translocation R [Shewanella baltica OS155]
 gi|304352402|gb|EFM16799.1| Yop virulence translocation R [Shewanella baltica OS183]
 gi|306911712|gb|EFN42137.1| Yop virulence translocation R [Shewanella baltica BA175]
          Length = 216

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 70/202 (34%), Positives = 121/202 (59%), Gaps = 8/202 (3%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRSI 107
           LS+ P+  +M T F +  IVFS+LR  +G+  +PPN+ I  LAL +T + M+P  +  + 
Sbjct: 17  LSLLPLFAVMGTSFLKLAIVFSMLRNALGIQQIPPNMAIYGLALILTLFTMAPVGMAIND 76

Query: 108 EMGIQPLMNN--QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS--SHRNTDITK 163
            +   P++ +   + E    + +A P+  F+  NT    +  F ++ H     +   +  
Sbjct: 77  NLKATPIVFDAPNVFEQINTEAIA-PYRAFLDKNTSNTQIEFFANIGHKVWPEKYQQVLT 135

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
            D +   +++P+F +S+L  +F+IG LI LPF+ ID+IV+ I++AMGMMM+ P +I+LPF
Sbjct: 136 KDSL--LVMVPAFTMSQLIEAFKIGLLIYLPFVAIDLIVSNILLAMGMMMVSPMTIALPF 193

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K++ F+L+ GW  L+  L+ SF
Sbjct: 194 KLLIFILMGGWEKLISQLMMSF 215


>gi|48256988|gb|AAT41683.1| type three secretion apparatus protein R [Edwardsiella ictaluri]
 gi|84663102|gb|ABC60084.1| EsaR [Edwardsiella ictaluri 93-146]
          Length = 250

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 119/196 (60%), Gaps = 11/196 (5%)

Query: 56  LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115
           ++M T F +  +VF++LR  +G+  +PPNL +  LAL +T ++M+P     +   +Q  +
Sbjct: 59  IVMGTSFLKLSVVFALLRNALGIQQIPPNLALYGLALILTLFIMTP-----VGTAVQARL 113

Query: 116 NNQ--ITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169
            +     +TT + R+++    P+  F+R +T  K L  F  +A  S   +   K      
Sbjct: 114 ADAPAQAQTTLLSRLSDNTLDPYRQFLRQHTSAKQLKFFRQVATKSWPASVREKISDNSL 173

Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
            +L+P+F +S+L  +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +IS+PFK++ F+
Sbjct: 174 LLLMPAFAVSQLVEAFQIGLLLFLPFIAIDLIVSNILLAMGMMMVSPMTISMPFKLLVFI 233

Query: 230 LIDGWSLLVENLVKSF 245
           L+ GW  ++  L+ S+
Sbjct: 234 LVGGWDKILGQLLLSY 249


>gi|110632472|ref|YP_672680.1| type III secretion system protein [Mesorhizobium sp. BNC1]
 gi|110283456|gb|ABG61515.1| Yop virulence translocation R [Chelativorans sp. BNC1]
          Length = 220

 Score =  128 bits (322), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 74/201 (36%), Positives = 118/201 (58%), Gaps = 6/201 (2%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108
           LS  P +++M T F +  IV  +LR  +G+   P  LVI S+AL +T +VM P  +  I 
Sbjct: 20  LSFIPFIVVMGTAFTKISIVLMLLRNAIGVQQAPSGLVINSIALTLTVFVMVPVGNAIIT 79

Query: 109 MGIQPLMN----NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              Q  +       +++  ++  V+E F  +++  +  ++L  FMD A      T   + 
Sbjct: 80  QVQQQQLGFTGWENVSQLYSV--VSEAFTGYLKQFSSPRELQFFMDAARKMWPETLHGQI 137

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
                 IL+P+ + SEL R+F+I FLI LPF+++DM+V+ I++AMG MM+PP  +SLP K
Sbjct: 138 TTDNVFILLPAHVTSELTRAFQIAFLIFLPFVVVDMVVSNILLAMGAMMVPPMLVSLPIK 197

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FV  DGW+LL+ NLV S+
Sbjct: 198 ILLFVAADGWALLLHNLVLSY 218


>gi|289663757|ref|ZP_06485338.1| type III secretion system protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289668179|ref|ZP_06489254.1| type III secretion system protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 214

 Score =  128 bits (322), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 69/199 (34%), Positives = 116/199 (58%), Gaps = 11/199 (5%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP----TLDRSIE 108
           P   ++VT + +  +V  +LR  +G+  VPPN+V+  +AL ++ +VM+P        +  
Sbjct: 20  PFAAMVVTSYTKIAVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAFKAAQN 79

Query: 109 MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS--SHRNTDITKNDH 166
            G     N  +    A +   EPF  F+  +TRE++ + FM  A         D  K+D 
Sbjct: 80  YGAGSENNRVVVLLDACR---EPFRQFLLKHTREREKAFFMRSAQQIWPKDKADALKSDD 136

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
           +   +L P+F +SEL  +F IGFL+ L F++ID++VA  +MAMG+  + PT++++PFK++
Sbjct: 137 L--LVLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLL 194

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FV +DGWS+L+  LV S+
Sbjct: 195 LFVAMDGWSMLIHGLVLSY 213


>gi|270285645|ref|ZP_06195039.1| type III secretion system protein [Chlamydia muridarum Nigg]
          Length = 271

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 73/211 (34%), Positives = 126/211 (59%), Gaps = 17/211 (8%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT------ 102
           L+++P L++++T + + II   +LR  +G+   PP+ V+  +AL ++ YVM PT      
Sbjct: 63  LALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGMAMYN 122

Query: 103 -LDRSIEMGIQP--LMNNQITETT--AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSS-- 155
              + IE    P  L + +  ET   A+ +  EP   F+ NNT +  +  F  ++  +  
Sbjct: 123 DAKKGIESDAVPRDLFSAEGAETVFVALNKSKEPLRSFLINNTPKPQIQSFYKISQKTFP 182

Query: 156 -HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
                 +T +D +   ++IP+F++ +++ +FEIG LI LPF +ID++ A +++AM MMML
Sbjct: 183 PELRQQLTPSDFV---VVIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQMMML 239

Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            P SISLP K++  V++DGW+LL+E L+ SF
Sbjct: 240 SPLSISLPLKLLLVVMVDGWTLLLEGLMISF 270


>gi|15835465|ref|NP_297224.1| type III secretion system protein [Chlamydia muridarum Nigg]
 gi|270289654|ref|ZP_06195956.1| type III secretion system protein [Chlamydia muridarum Weiss]
 gi|301337041|ref|ZP_07225243.1| type III secretion system protein [Chlamydia muridarum MopnTet14]
 gi|8163334|gb|AAF73610.1| type III secretion inner membrane protein SctR [Chlamydia muridarum
           Nigg]
          Length = 311

 Score =  128 bits (321), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 73/211 (34%), Positives = 126/211 (59%), Gaps = 17/211 (8%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT------ 102
           L+++P L++++T + + II   +LR  +G+   PP+ V+  +AL ++ YVM PT      
Sbjct: 103 LALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGMAMYN 162

Query: 103 -LDRSIEMGIQP--LMNNQITETT--AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSS-- 155
              + IE    P  L + +  ET   A+ +  EP   F+ NNT +  +  F  ++  +  
Sbjct: 163 DAKKGIESDAVPRDLFSAEGAETVFVALNKSKEPLRSFLINNTPKPQIQSFYKISQKTFP 222

Query: 156 -HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
                 +T +D +   ++IP+F++ +++ +FEIG LI LPF +ID++ A +++AM MMML
Sbjct: 223 PELRQQLTPSDFV---VVIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQMMML 279

Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            P SISLP K++  V++DGW+LL+E L+ SF
Sbjct: 280 SPLSISLPLKLLLVVMVDGWTLLLEGLMISF 310


>gi|238798580|ref|ZP_04642057.1| Flagellar biosynthetic protein fliP [Yersinia mollaretii ATCC
           43969]
 gi|238717600|gb|EEQ09439.1| Flagellar biosynthetic protein fliP [Yersinia mollaretii ATCC
           43969]
          Length = 207

 Score =  128 bits (321), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 67/187 (35%), Positives = 112/187 (59%), Gaps = 6/187 (3%)

Query: 21  SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           + L  +++ P      +W   ++T  + T LS  P  L+M+T F R IIV  +LR  +G 
Sbjct: 25  AQLPGIISQPLANGGQSWSLPIQTLVLITSLSFLPAALLMMTSFTRIIIVLGLLRNALGT 84

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
            S PPN V++ LALF+TF++MSP  D+  +    P   ++I+   A+ + A+P   FM  
Sbjct: 85  PSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAMDKGAQPLREFMLR 144

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
            TRE DL+L+  +A+       +   + +  RIL+P+++ SEL+ +F+IGF + +PFLII
Sbjct: 145 QTRESDLALYARLANLPP----LEGPEMVPLRILLPAYVTSELKTAFQIGFTVFIPFLII 200

Query: 199 DMIVATI 205
           D++VA++
Sbjct: 201 DLVVASV 207


>gi|76574805|gb|ABA47279.1| HrcR [Pseudomonas cichorii]
          Length = 209

 Score =  128 bits (321), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 72/209 (34%), Positives = 130/209 (62%), Gaps = 20/209 (9%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108
           LS+ P+L+I+ T F +  +V  I R  +G+   PPN+ +  +AL  T ++M+P  +   E
Sbjct: 10  LSLVPLLMIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFN---E 66

Query: 109 MG--IQPL---MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR------ 157
           MG  ++ L   ++N     +A + V EP  +FM   TR  D  +   +  ++ R      
Sbjct: 67  MGQRVKKLPERLDNFAAMESAGKHVIEPLRLFM---TRNIDPDIQTHLLENTQRMWPKEM 123

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
           ++  +++D +   +++P+F++SEL+  F+IGFLI +PF++ID+IV+ I++A+GM M+ P 
Sbjct: 124 SSQASRDDLL---LVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPM 180

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +ISLP K++ FVL+DGW+ L++ L  S++
Sbjct: 181 TISLPLKILLFVLVDGWTRLLDGLFYSYM 209


>gi|85059283|ref|YP_454985.1| type III secretion system protein [Sodalis glossinidius str.
           'morsitans']
 gi|84779803|dbj|BAE74580.1| putative type III secretion apparatus [Sodalis glossinidius str.
           'morsitans']
          Length = 215

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/190 (35%), Positives = 112/190 (58%), Gaps = 3/190 (1%)

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           M T F +  +V SILR  +G+  VPPN+ +  LAL ++ ++M+PT   +++    P+   
Sbjct: 26  MGTSFLKLAVVLSILRNALGIQQVPPNMALYGLALILSLFIMAPT-ALAVKAQWHPVAAP 84

Query: 118 QITETTAI--QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPS 175
             T   +    +   P+  F+R N  EK++  F  +   +       +       IL+P+
Sbjct: 85  GDTPWASGWDGKALMPYRQFLRRNADEKEIRYFHQLVTKTWPEEARRRVRPDSLLILLPA 144

Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235
           F +S+L ++F IG LI LPFL ID++V+ +++AMGMMM+ P +ISLPFK++ F+L  GW 
Sbjct: 145 FTVSQLSQAFRIGLLIYLPFLAIDLLVSNVLLAMGMMMVSPMTISLPFKLLIFMLAGGWD 204

Query: 236 LLVENLVKSF 245
           L++  LV+SF
Sbjct: 205 LILSQLVQSF 214


>gi|30524904|gb|AAP34349.1|AF499777_17 HrcR [Xanthomonas axonopodis pv. glycines]
          Length = 200

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 119/202 (58%), Gaps = 7/202 (3%)

Query: 48  ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107
           +L + P   ++VT + + ++V  +LR  +G+  VPPN+V+  +AL ++ +VM+P    + 
Sbjct: 1   MLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF 60

Query: 108 EMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITK 163
           +        +  +    +     EPF  F+  +TRE++ + FM  A       +   +  
Sbjct: 61  KAAQNYGAGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLKS 120

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
           +D +   +L P+F +SEL  +F IGFL+ L F++ID++VA  +MAMG+  + PT++++PF
Sbjct: 121 DDLL---VLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPF 177

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K++ FV +DGWS+L+  LV S+
Sbjct: 178 KLLLFVAMDGWSMLIHGLVLSY 199


>gi|21230683|ref|NP_636600.1| type III secretion system protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769322|ref|YP_244084.1| type III secretion system protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188992474|ref|YP_001904484.1| type III secretion system protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|325921929|ref|ZP_08183740.1| HrcR [Xanthomonas gardneri ATCC 19865]
 gi|21112271|gb|AAM40524.1| HrcR protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66574654|gb|AAY50064.1| HrcR protein [Xanthomonas campestris pv. campestris str. 8004]
 gi|167734234|emb|CAP52442.1| HrcR protein [Xanthomonas campestris pv. campestris]
 gi|325547631|gb|EGD18674.1| HrcR [Xanthomonas gardneri ATCC 19865]
          Length = 214

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 119/202 (58%), Gaps = 7/202 (3%)

Query: 48  ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107
           +L + P   ++VT + + ++V  +LR  +G+  VPPN+V+  +AL ++ +VM+P    + 
Sbjct: 15  MLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF 74

Query: 108 EMG--IQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS--SHRNTDITK 163
           +      P  +N       +    EPF  F+  +TRE++ + F+  A         D  K
Sbjct: 75  KAAQNYSPGADNSRV-VVLLDACREPFRQFLLKHTREREKAFFIRSAQQIWPKDKADTLK 133

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
            D  +  +L P+F +SEL  +F IGFL+ L F++ID++VA  +MAMG+  + PT++++PF
Sbjct: 134 PD--DLLVLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPF 191

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K++ FV +DGWS+L+  LV S+
Sbjct: 192 KLLLFVALDGWSMLIHGLVLSY 213


>gi|166714030|ref|ZP_02245237.1| type III secretion system protein [Xanthomonas oryzae pv. oryzicola
           BLS256]
 gi|111146915|gb|ABH07400.1| HrcR [Xanthomonas oryzae pv. oryzicola]
          Length = 214

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 66/202 (32%), Positives = 119/202 (58%), Gaps = 7/202 (3%)

Query: 48  ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107
           +L + P   ++VT + + ++V  +LR  +G+  VPPN+V+  +AL ++ +VM+P    + 
Sbjct: 15  MLGLLPFAALVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF 74

Query: 108 EMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITK 163
           +        +  +    +     EPF  F+  +TRE++ + FM  A       +   +  
Sbjct: 75  KAAQNYGAGSDNSRIVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLKS 134

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
           +D +   IL P+F +SEL  +F IGFL+ L F++ID++VA  +MAMG+  + PT++++PF
Sbjct: 135 DDLL---ILAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPF 191

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K++ FV +DGWS+L+  LV S+
Sbjct: 192 KLLLFVAMDGWSILIHGLVLSY 213


>gi|21241175|ref|NP_640757.1| type III secretion system protein [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|78045978|ref|YP_362153.1| type III secretion system protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325927673|ref|ZP_08188901.1| HrcR protein [Xanthomonas perforans 91-118]
 gi|4494848|gb|AAD21321.1| HrcR [Xanthomonas euvesicatoria]
 gi|21106482|gb|AAM35293.1| HrcR protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|78034408|emb|CAJ22053.1| HrcR protein [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|325541874|gb|EGD13388.1| HrcR protein [Xanthomonas perforans 91-118]
          Length = 214

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 119/202 (58%), Gaps = 7/202 (3%)

Query: 48  ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107
           +L + P   ++VT + + ++V  +LR  +G+  VPPN+V+  +AL ++ +VM+P    + 
Sbjct: 15  MLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF 74

Query: 108 EMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITK 163
           +        +  +    +     EPF  F+  +TRE++ + FM  A       +   +  
Sbjct: 75  KAAQNYGAGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLKS 134

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
           +D +   +L P+F +SEL  +F IGFL+ L F++ID++VA  +MAMG+  + PT++++PF
Sbjct: 135 DDLL---VLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPF 191

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K++ FV +DGWS+L+  LV S+
Sbjct: 192 KLLLFVAMDGWSMLIHGLVLSY 213


>gi|307718614|ref|YP_003874146.1| hypothetical protein STHERM_c09260 [Spirochaeta thermophila DSM
           6192]
 gi|306532339|gb|ADN01873.1| hypothetical protein STHERM_c09260 [Spirochaeta thermophila DSM
           6192]
          Length = 258

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/197 (38%), Positives = 118/197 (59%), Gaps = 6/197 (3%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +L++ T F R  +V   +R  +G+  VPP  V++ ++LF+T +VM PT     +   
Sbjct: 66  APSILVLTTSFLRIALVLDFIRRALGLQQVPPTQVLMGISLFLTLFVMWPTFQEVYDDSF 125

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTRE--KDLSLFMDMAHSSHRNTDITKNDHIEY 169
            PL   +I    A  R   P  +FM    +   + + LFM M+     +T      HI  
Sbjct: 126 VPLSRGEIGVEEAYGRAVGPLRIFMYRQMQNDVEPIRLFMRMSGLPRPDTLADVPTHI-- 183

Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
             LIP+F++ EL  +F+IG ++ +PF+IIDM+VA+ +M+MGM+MLPP  IS PFK++ FV
Sbjct: 184 --LIPAFILHELTVAFKIGIILYIPFIIIDMVVASTLMSMGMIMLPPVMISFPFKLLLFV 241

Query: 230 LIDGWSLLVENLVKSFI 246
           L+DGW+L+ + L+ SF+
Sbjct: 242 LVDGWTLITQQLLGSFV 258


>gi|15605291|ref|NP_220077.1| type III secretion system protein [Chlamydia trachomatis D/UW-3/CX]
 gi|76789299|ref|YP_328385.1| type III secretion system protein [Chlamydia trachomatis A/HAR-13]
 gi|166155652|ref|YP_001653907.1| type III secretion system protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|237802991|ref|YP_002888185.1| type III secretion system protein [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237804913|ref|YP_002889067.1| type III secretion system protein [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255311381|ref|ZP_05353951.1| type III secretion system protein [Chlamydia trachomatis 6276]
 gi|255317682|ref|ZP_05358928.1| type III secretion system protein [Chlamydia trachomatis 6276s]
 gi|3329003|gb|AAC68164.1| Yop proteins translocation protein R [Chlamydia trachomatis
           D/UW-3/CX]
 gi|76167829|gb|AAX50837.1| SctR [Chlamydia trachomatis A/HAR-13]
 gi|165931640|emb|CAP07216.1| type III secretion system, membrane protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|231273213|emb|CAX10126.1| type III secretion system, membrane protein [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231274225|emb|CAX11019.1| type III secretion system, membrane protein [Chlamydia trachomatis
           B/Jali20/OT]
 gi|296436096|gb|ADH18270.1| type III secretion system protein [Chlamydia trachomatis G/9768]
 gi|296437024|gb|ADH19194.1| type III secretion system protein [Chlamydia trachomatis G/11222]
 gi|296437956|gb|ADH20117.1| type III secretion system protein [Chlamydia trachomatis G/11074]
 gi|297140457|gb|ADH97215.1| type III secretion system protein [Chlamydia trachomatis G/9301]
          Length = 306

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/215 (34%), Positives = 126/215 (58%), Gaps = 17/215 (7%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-- 102
           I   L+++P L++++T + + II   +LR  +G+   PP+ V+  +AL ++ YVM PT  
Sbjct: 94  ILLFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGV 153

Query: 103 -----LDRSIEMGIQP--LMNNQITETT--AIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
                  + IE    P  L + +  ET   A+ +  EP   F+  NT +  +  F  ++ 
Sbjct: 154 AMYNDAKKGIESSAVPRDLFSAEGAETVFVALNKSKEPLRSFLIKNTPKPQIQSFYKISQ 213

Query: 154 SS---HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
            +        +T +D   + I+IP+F++ +++ +FEIG LI LPF +ID++ A +++AM 
Sbjct: 214 KTFPPELRQQLTPSD---FMIIIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQ 270

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMML P SISLP K++  V++DGW+LL+E L+ SF
Sbjct: 271 MMMLSPLSISLPLKLLLVVMVDGWTLLLEGLMISF 305


>gi|315186373|gb|EFU20133.1| flagellar biosynthetic protein FliP [Spirochaeta thermophila DSM
           6578]
          Length = 258

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/197 (38%), Positives = 118/197 (59%), Gaps = 6/197 (3%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +L++ T F R  +V   +R  +G+  VPP  V++ ++LF+T +VM PT     +   
Sbjct: 66  APSILVLTTSFLRIALVLDFIRRALGLQQVPPTQVLMGISLFLTLFVMWPTFQEVYDDSF 125

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTRE--KDLSLFMDMAHSSHRNTDITKNDHIEY 169
            PL   +I    A  R   P  +FM    +   + + LFM M+     +T      HI  
Sbjct: 126 VPLSRGEIDVEEAYGRAVGPLRIFMYRQMQNNVEPIRLFMRMSGLPRPDTLADVPTHI-- 183

Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
             LIP+F++ EL  +F+IG ++ +PF+IIDM+VA+ +M+MGM+MLPP  IS PFK++ FV
Sbjct: 184 --LIPAFILHELTVAFKIGIILYIPFIIIDMVVASTLMSMGMIMLPPVMISFPFKLLLFV 241

Query: 230 LIDGWSLLVENLVKSFI 246
           L+DGW+L+ + L+ SF+
Sbjct: 242 LVDGWTLITQQLLGSFV 258


>gi|166154777|ref|YP_001654895.1| type III secretion system protein [Chlamydia trachomatis 434/Bu]
 gi|301336052|ref|ZP_07224296.1| type III secretion system protein [Chlamydia trachomatis L2tet1]
 gi|165930765|emb|CAP04262.1| type III secretion system, membrane protein [Chlamydia trachomatis
           434/Bu]
          Length = 306

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/215 (34%), Positives = 126/215 (58%), Gaps = 17/215 (7%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-- 102
           I   L+++P L++++T + + II   +LR  +G+   PP+ V+  +AL ++ YVM PT  
Sbjct: 94  ILLFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGV 153

Query: 103 -----LDRSIEMGIQP--LMNNQITETT--AIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
                  + IE    P  L + +  ET   A+ +  EP   F+  NT +  +  F  ++ 
Sbjct: 154 AMYHDAKKGIESSAVPRDLFSAEGAETVFVALNKSKEPLRSFLIKNTPKPQIQSFYKISQ 213

Query: 154 SS---HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
            +        +T +D   + I+IP+F++ +++ +FEIG LI LPF +ID++ A +++AM 
Sbjct: 214 KTFPPELRQQLTPSD---FMIIIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQ 270

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMML P SISLP K++  V++DGW+LL+E L+ SF
Sbjct: 271 MMMLSPLSISLPLKLLLVVMVDGWTLLLEGLMISF 305


>gi|255348943|ref|ZP_05380950.1| type III secretion system protein [Chlamydia trachomatis 70]
 gi|255503482|ref|ZP_05381872.1| type III secretion system protein [Chlamydia trachomatis 70s]
 gi|255507160|ref|ZP_05382799.1| type III secretion system protein [Chlamydia trachomatis D(s)2923]
 gi|289525607|emb|CBJ15085.1| type III secretion system, membrane protein [Chlamydia trachomatis
           Sweden2]
 gi|296435168|gb|ADH17346.1| type III secretion system protein [Chlamydia trachomatis E/150]
 gi|296438888|gb|ADH21041.1| type III secretion system protein [Chlamydia trachomatis E/11023]
          Length = 306

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/215 (34%), Positives = 126/215 (58%), Gaps = 17/215 (7%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-- 102
           I   L+++P L++++T + + II   +LR  +G+   PP+ V+  +AL ++ YVM PT  
Sbjct: 94  ILLFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGV 153

Query: 103 -----LDRSIEMGIQP--LMNNQITETT--AIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
                  + IE    P  L + +  ET   A+ +  EP   F+  NT +  +  F  ++ 
Sbjct: 154 AMYNDAKKGIESSAVPRDLFSAEGAETVFVALNKSKEPLRSFLIKNTPKPQIQSFYKISQ 213

Query: 154 SS---HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
            +        +T +D   + I+IP+F++ +++ +FEIG LI LPF +ID++ A +++AM 
Sbjct: 214 KTFPPELRQQLTPSD---FMIIIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQ 270

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMML P SISLP K++  V++DGW+LL+E L+ SF
Sbjct: 271 MMMLSPLSISLPLKLLLVVMVDGWTLLLEGLMISF 305


>gi|297748692|gb|ADI51238.1| type III secretion inner membrane protein SctR [Chlamydia
           trachomatis D-EC]
 gi|297749572|gb|ADI52250.1| type III secretion inner membrane protein SctR [Chlamydia
           trachomatis D-LC]
          Length = 309

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/215 (34%), Positives = 126/215 (58%), Gaps = 17/215 (7%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-- 102
           I   L+++P L++++T + + II   +LR  +G+   PP+ V+  +AL ++ YVM PT  
Sbjct: 97  ILLFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGV 156

Query: 103 -----LDRSIEMGIQP--LMNNQITETT--AIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
                  + IE    P  L + +  ET   A+ +  EP   F+  NT +  +  F  ++ 
Sbjct: 157 AMYNDAKKGIESSAVPRDLFSAEGAETVFVALNKSKEPLRSFLIKNTPKPQIQSFYKISQ 216

Query: 154 SS---HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
            +        +T +D   + I+IP+F++ +++ +FEIG LI LPF +ID++ A +++AM 
Sbjct: 217 KTFPPELRQQLTPSD---FMIIIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQ 273

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMML P SISLP K++  V++DGW+LL+E L+ SF
Sbjct: 274 MMMLSPLSISLPLKLLLVVMVDGWTLLLEGLMISF 308


>gi|15618734|ref|NP_225020.1| type III secretion system protein [Chlamydophila pneumoniae CWL029]
 gi|15836358|ref|NP_300882.1| type III secretion system protein [Chlamydophila pneumoniae J138]
 gi|16752215|ref|NP_445583.1| type III secretion system protein [Chlamydophila pneumoniae AR39]
 gi|33242185|ref|NP_877126.1| type III secretion system protein [Chlamydophila pneumoniae TW-183]
 gi|4377137|gb|AAD18962.1| Yop proteins translocation protein R [Chlamydophila pneumoniae
           CWL029]
 gi|6672012|dbj|BAA88643.1| Yop translocation R [Chlamydophila pneumoniae]
 gi|7189960|gb|AAF38821.1| type III secretion inner membrane protein SctR [Chlamydophila
           pneumoniae AR39]
 gi|8979199|dbj|BAA99033.1| Yop translocation R [Chlamydophila pneumoniae J138]
 gi|33236696|gb|AAP98783.1| YscR [Chlamydophila pneumoniae TW-183]
          Length = 306

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/215 (34%), Positives = 125/215 (58%), Gaps = 17/215 (7%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-- 102
           I   L+++P L++++T + + II   +LR  +G+   PP+ V+  +AL ++ YVM PT  
Sbjct: 94  ILIFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGV 153

Query: 103 -----LDRSIEMGI--QPLMNNQITETT--AIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
                  + IE     Q L   +  ET   A+ +  EP   F+  NT +  +  F  ++ 
Sbjct: 154 AMYKDARKEIEANTIPQSLFTAEGAETVFVALNKSKEPLRSFLIRNTPKAQIQSFYKISQ 213

Query: 154 S---SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
               S     +T +D +   I+IP+F++ +++ +FEIG LI LPF +ID++ A +++AM 
Sbjct: 214 KTFPSEIRAHLTASDFV---IIIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQ 270

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMML P SISLP K++  V++DGW+LL++ L+ SF
Sbjct: 271 MMMLSPLSISLPLKLLLIVMVDGWTLLLQGLMISF 305


>gi|21492903|ref|NP_659978.1| type III secretion system protein [Rhizobium etli CFN 42]
 gi|218508018|ref|ZP_03505896.1| type III secretion system protein [Rhizobium etli Brasil 5]
 gi|218674847|ref|ZP_03524516.1| type III secretion system protein [Rhizobium etli GR56]
 gi|21467328|gb|AAM54991.1| type III secretion system translocation protein [Rhizobium etli CFN
           42]
          Length = 217

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/209 (33%), Positives = 119/209 (56%), Gaps = 2/209 (0%)

Query: 39  IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
           + ++      +S+ P++ ++ T F +  +V  I+R  +G+   PPNL++ ++A+ ++ +V
Sbjct: 7   LAQSLAAMAAISMLPVIAVIATSFTKISVVLLIVRNAIGIQQTPPNLLVFAIAIVLSAFV 66

Query: 99  MSPTLDRSIEMGIQPLMNNQITETTA--IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           M+P L  S ++ +    +       A  + +VA P   FM   +  +    F+  +    
Sbjct: 67  MNPVLQNSWQLLLAHSGDFGTVSGMADGMIKVAAPLKDFMLKFSDAEVRDFFVQASQKIW 126

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
            N   T     +  +L PSF++SEL R+FEIGFLI LPFL+ID  V+ I++A+GM M+ P
Sbjct: 127 ANAPATPIASDDITVLTPSFLVSELTRAFEIGFLIYLPFLMIDFAVSAILVALGMQMMSP 186

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           T +S P K++ FV IDGW  L+E LV S+
Sbjct: 187 TVVSTPLKLLLFVSIDGWRRLLEGLVLSY 215


>gi|187919910|ref|YP_001888941.1| type III secretion system protein [Burkholderia phytofirmans PsJN]
 gi|187718348|gb|ACD19571.1| Yop virulence translocation R [Burkholderia phytofirmans PsJN]
          Length = 215

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/204 (34%), Positives = 119/204 (58%), Gaps = 8/204 (3%)

Query: 46  FTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDR 105
           F +L + P+++ M T F +F IV ++LR+ +G+   P N+ I +LAL  T  VM+PT+++
Sbjct: 14  FFVLGLLPLIVTMTTSFTKFSIVLTLLRSAVGVQQAPGNMAISALALAATLVVMAPTMEK 73

Query: 106 ---SIEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
               + +G + +   Q  + T + Q V  P   FM  ++R  + +  +  A       D 
Sbjct: 74  IGGDLSLG-ERVERGQFPDVTEVYQAVRGPLGEFMMEHSRPSERAFLVTAAKRIDPARDA 132

Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
            + D   + +LIP+FMISE+   FE GFL+ + FLIID+++A ++ AMGM+ML PT++S 
Sbjct: 133 QETD---FSLLIPAFMISEISSGFEAGFLLYMAFLIIDLVIANVLTAMGMVMLSPTTVST 189

Query: 222 PFKVIFFVLIDGWSLLVENLVKSF 245
           P K+   V + G S L+  L+ S+
Sbjct: 190 PLKLFVLVSVSGISKLMHGLIVSY 213


>gi|289805125|ref|ZP_06535754.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 117

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/119 (47%), Positives = 88/119 (73%), Gaps = 4/119 (3%)

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           + A+P   FM   TRE DL+LF  +A+S      +   + +  RIL+P+++ SEL+ +F+
Sbjct: 1   KGAQPLRAFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSELKTAFQ 56

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 57  IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 115


>gi|294665992|ref|ZP_06731255.1| HrcR protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292604240|gb|EFF47628.1| HrcR protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 214

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 119/202 (58%), Gaps = 7/202 (3%)

Query: 48  ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107
           +L + P   ++VT + + ++V  +LR  +G+  VPPN+V+  +AL ++ +VM+P    + 
Sbjct: 15  MLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF 74

Query: 108 EMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITK 163
           +        +  +    +     EPF  F+  +TRE++ + FM  A       +   +  
Sbjct: 75  KAAQNYGAGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLKS 134

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
           +D +   +L P+F +SEL  +F IGFL+ L F++ID++VA  +MAMG+  + PT++++PF
Sbjct: 135 DDLL---VLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPF 191

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K++ FV +DGWS+L+  LV S+
Sbjct: 192 KLLLFVAMDGWSMLMHGLVLSY 213


>gi|190894060|ref|YP_001984354.1| type III secretion system translocation protein [Rhizobium etli
           CIAT 652]
 gi|190699721|gb|ACE93804.1| type III secretion system translocation protein [Rhizobium etli
           CIAT 652]
          Length = 217

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/199 (35%), Positives = 116/199 (58%), Gaps = 2/199 (1%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108
           +S+ P++ ++ T F +  +V  I+R  +G+   PPNL++ ++A+ ++ +VM+P L  S +
Sbjct: 17  ISMLPVIAVIATSFTKISVVLLIVRNAIGIQQTPPNLLVFAIAIVLSAFVMNPVLQNSWQ 76

Query: 109 MGIQPLMNNQITETTA--IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
           + +    +       A  + +VA P   FM   +  +    F+  +     N   T    
Sbjct: 77  LLLAHSGDFGTVSGMADGMIKVAAPLKDFMLKFSDAEVRDFFVQASQKIWANAPATSIAS 136

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
            +  +L PSF++SEL R+FEIGFLI LPFL+ID  V+ I++A+GM M+ PT +S P K++
Sbjct: 137 DDITVLTPSFLVSELTRAFEIGFLIYLPFLMIDFAVSAILVALGMQMMSPTVVSTPLKLL 196

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FV IDGW  L+E LV S+
Sbjct: 197 LFVSIDGWRRLLEGLVLSY 215


>gi|227820525|ref|YP_002824496.1| type III secretion system protein [Sinorhizobium fredii NGR234]
 gi|227339524|gb|ACP23743.1| translocation protein in type III secretion RhcR [Sinorhizobium
           fredii NGR234]
          Length = 217

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/204 (35%), Positives = 118/204 (57%), Gaps = 8/204 (3%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD-- 104
           + + + P+ ++ +T F +  IV  ++R  +G+   PPNLV+  +AL +T YV +P +   
Sbjct: 16  STIGLIPLAVVTMTGFLKISIVLFLIRNALGIQQSPPNLVLYGVALILTVYVTTPLVGEM 75

Query: 105 -RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS--SHRNTDI 161
            R++    Q  M +  +   A  ++  P    +   T E +   F+       S      
Sbjct: 76  YRTLS-SEQVDMQSMDSMVRAANQLRAPLQAHLTRYTDENERQFFLQATERIWSEEARAS 134

Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
            K D +   IL+P+F+ SEL R+FEIGFL+ LPFL+ID+IV+T++MAMGMMM+ PT IS+
Sbjct: 135 VKTDSL--LILVPAFVSSELTRAFEIGFLLYLPFLVIDLIVSTVLMAMGMMMVSPTLISI 192

Query: 222 PFKVIFFVLIDGWSLLVENLVKSF 245
           P K+  FV ++GWS L+  L+ S+
Sbjct: 193 PLKIFLFVAVNGWSRLMHGLILSY 216


>gi|269302615|gb|ACZ32715.1| type III secretion apparatus protein, YscR/HrcR family
           [Chlamydophila pneumoniae LPCoLN]
          Length = 306

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/215 (34%), Positives = 125/215 (58%), Gaps = 17/215 (7%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-- 102
           I   L+++P L++++T + + II   +LR  +G+   PP+ V+  +AL ++ YVM PT  
Sbjct: 94  ILIFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGV 153

Query: 103 -----LDRSIEMGI--QPLMNNQITETT--AIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
                  + IE     Q L   +  ET   A+ +  EP   F+  NT +  +  F  ++ 
Sbjct: 154 AMYKDARKEIEANTIPQSLFTAEGAETVFVALNKSKEPLRSFLIRNTPKAQIQSFYKISQ 213

Query: 154 S---SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
               S     +T +D +   I+IP+F++ +++ +FEIG LI LPF +ID++ A +++AM 
Sbjct: 214 KTFPSEIREHLTASDFV---IIIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQ 270

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMML P SISLP K++  V++DGW+LL++ L+ SF
Sbjct: 271 MMMLSPLSISLPLKLLLIVMVDGWTLLLQGLMISF 305


>gi|53722431|ref|YP_111416.1| type III secretion system protein [Burkholderia pseudomallei
           K96243]
 gi|76818756|ref|YP_335589.1| type III secretion system protein [Burkholderia pseudomallei 1710b]
 gi|126444935|ref|YP_001062995.1| type III secretion system protein [Burkholderia pseudomallei 668]
 gi|126456985|ref|YP_001075942.1| type III secretion system protein [Burkholderia pseudomallei 1106a]
 gi|134282501|ref|ZP_01769205.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 305]
 gi|167724022|ref|ZP_02407258.1| type III secretion system protein [Burkholderia pseudomallei DM98]
 gi|167742991|ref|ZP_02415765.1| type III secretion system protein [Burkholderia pseudomallei 14]
 gi|167820162|ref|ZP_02451842.1| type III secretion system protein [Burkholderia pseudomallei 91]
 gi|167828537|ref|ZP_02460008.1| type III secretion system protein [Burkholderia pseudomallei 9]
 gi|167849995|ref|ZP_02475503.1| type III secretion system protein [Burkholderia pseudomallei B7210]
 gi|167898604|ref|ZP_02486005.1| type III secretion system protein [Burkholderia pseudomallei 7894]
 gi|167906946|ref|ZP_02494151.1| type III secretion system protein [Burkholderia pseudomallei NCTC
           13177]
 gi|167915305|ref|ZP_02502396.1| type III secretion system protein [Burkholderia pseudomallei 112]
 gi|167923138|ref|ZP_02510229.1| type III secretion system protein [Burkholderia pseudomallei
           BCC215]
 gi|217425350|ref|ZP_03456844.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 576]
 gi|226199064|ref|ZP_03794626.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei Pakistan 9]
 gi|237510373|ref|ZP_04523088.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei MSHR346]
 gi|242313556|ref|ZP_04812573.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 1106b]
 gi|254183805|ref|ZP_04890397.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 1655]
 gi|254186719|ref|ZP_04893235.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254194021|ref|ZP_04900453.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei S13]
 gi|254264816|ref|ZP_04955681.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 1710a]
 gi|254301600|ref|ZP_04969044.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 406e]
 gi|4206078|gb|AAD11411.1| SctR [Burkholderia pseudomallei]
 gi|52212845|emb|CAH38879.1| putative type III secretion-associated protein [Burkholderia
           pseudomallei K96243]
 gi|76583229|gb|ABA52703.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 1710b]
 gi|126224426|gb|ABN87931.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 668]
 gi|126230753|gb|ABN94166.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 1106a]
 gi|134246058|gb|EBA46148.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 305]
 gi|157810966|gb|EDO88136.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 406e]
 gi|157934403|gb|EDO90073.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|169650772|gb|EDS83465.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei S13]
 gi|184214338|gb|EDU11381.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 1655]
 gi|217391601|gb|EEC31629.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 576]
 gi|225928839|gb|EEH24864.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei Pakistan 9]
 gi|235002578|gb|EEP52002.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei MSHR346]
 gi|242136795|gb|EES23198.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 1106b]
 gi|254215818|gb|EET05203.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 1710a]
          Length = 216

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 124/199 (62%), Gaps = 2/199 (1%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108
           +S+ P + ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ ++ YVM+P   ++ +
Sbjct: 17  ISLLPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYVMAPIGMQAAK 76

Query: 109 MGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
              +  + +Q ++    A+    EPF  F+  +T E++   F+  A       + +  + 
Sbjct: 77  ALDEQQLASQSSQAIIQALGSAREPFRSFLEKHTPEREKRFFIRSASVIWPKEEASLLNE 136

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
            +  +L P+F +SEL  +F+IGFL+ + F+I+D+++A +++A+G+  + PT++++PFK++
Sbjct: 137 RDLIVLAPAFALSELTDAFKIGFLLYIVFIIVDLVIANVLLALGLNQITPTNVAIPFKLL 196

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FV +DGWS L+  LV ++
Sbjct: 197 LFVAMDGWSTLIHGLVMTY 215


>gi|259909718|ref|YP_002650074.1| type III secretion system protein [Erwinia pyrifoliae Ep1/96]
 gi|224965340|emb|CAX56872.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
           pathway-harpin secretion protein [Erwinia pyrifoliae
           Ep1/96]
 gi|283479804|emb|CAY75720.1| Harpin secretion protein HrcR [Erwinia pyrifoliae DSM 12163]
 gi|310766418|gb|ADP11368.1| type III secretion system protein [Erwinia sp. Ejp617]
          Length = 217

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/211 (34%), Positives = 128/211 (60%), Gaps = 9/211 (4%)

Query: 42  TFGIF-TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100
           TF +F   LS+ P+L+I+ TCF +  +V  I R  +G+  VPPN+ +  +AL  T +VM+
Sbjct: 10  TFALFLGALSLIPMLMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMA 69

Query: 101 PTLDRSIEMGIQ--PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
           P  ++  +   Q    +++     T++     P   FM +NT   D  + + +  +S R 
Sbjct: 70  PVFNQMQQQFSQVPADLSSMDNLKTSVSNGVAPLQKFMTHNT---DPDILIHLQENSVRM 126

Query: 159 TDITKNDHIEYR---ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
                +D +      ++IP+F++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ 
Sbjct: 127 WPKEMSDSVSKDNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVA 186

Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           P ++SLP K++ FVLI+GW+ L++ L  S++
Sbjct: 187 PMTLSLPLKMLLFVLINGWTRLLDGLFYSYL 217


>gi|294625840|ref|ZP_06704456.1| HrcR protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292599868|gb|EFF43989.1| HrcR protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 214

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 67/209 (32%), Positives = 122/209 (58%), Gaps = 21/209 (10%)

Query: 48  ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107
           +L + P   ++VT + + ++V  +LR  +G+  VPPN+V+  +AL ++ +VM+P      
Sbjct: 15  MLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAP------ 68

Query: 108 EMGIQPLMNNQITETTA--------IQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SH 156
            +G++     Q   T +        +    EPF  F+  +TRE++ + FM  A       
Sbjct: 69  -VGMEAFKAAQNYGTGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKD 127

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
           +   +  +D +   +L P+F +SEL  +F IGFL+ + F++ID++VA  +MAMG+  + P
Sbjct: 128 KAATLKSDDLL---VLAPAFTLSELTEAFRIGFLLYMVFIVIDLVVANALMAMGLSQVTP 184

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           T++++PFK++ FV +DGWS+L+  LV S+
Sbjct: 185 TNVAIPFKLLLFVAMDGWSMLMHGLVLSY 213


>gi|170738279|ref|YP_001779539.1| Yop virulence translocation R [Burkholderia cenocepacia MC0-3]
 gi|169820467|gb|ACA95049.1| Yop virulence translocation R [Burkholderia cenocepacia MC0-3]
          Length = 216

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 64/199 (32%), Positives = 120/199 (60%), Gaps = 10/199 (5%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P + ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ +T YVM+P    + +    
Sbjct: 21  PFVAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVTLYVMAPIGMSAADTMRH 80

Query: 113 PLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH----SSHRNTDITKNDH 166
             + N   E    A      PF  F++ ++RE++   FM  AH     S  N  + ++D 
Sbjct: 81  EQLANSPAEIMVQAFGASQAPFRTFLKAHSRERERLFFMRSAHVIWPESLANA-LHEDDL 139

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
           I   +L P+F ++EL  +F+IGFL+ + F+I+D ++A +++AMG+  + PT++++PFK++
Sbjct: 140 I---VLAPAFTLTELADAFKIGFLLYIAFIIVDFVIANVLLAMGLNQIQPTNVAIPFKLL 196

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FV +DGWS L+  L+ ++
Sbjct: 197 LFVAMDGWSALIHGLILTY 215


>gi|292487016|ref|YP_003529886.1| Harpin secretion protein HrcR [Erwinia amylovora CFBP1430]
 gi|292900599|ref|YP_003539968.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|114152817|sp|Q46646|HRCR_ERWAM RecName: Full=Harpin secretion protein hrcR
 gi|89474870|gb|AAB06005.2| HrcR [Erwinia amylovora]
 gi|291200447|emb|CBJ47576.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291552433|emb|CBA19478.1| Harpin secretion protein HrcR [Erwinia amylovora CFBP1430]
 gi|312171085|emb|CBX79344.1| Harpin secretion protein HrcR [Erwinia amylovora ATCC BAA-2158]
          Length = 217

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/211 (34%), Positives = 128/211 (60%), Gaps = 9/211 (4%)

Query: 42  TFGIF-TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100
           TF +F   LS+ P+L+I+ TCF +  +V  I R  +G+  VPPN+ +  +AL  T +VM+
Sbjct: 10  TFALFLGALSLIPMLMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMA 69

Query: 101 PTLDRSIEMGIQ--PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
           P  ++  +   Q    +++     T++     P   FM +NT   D  + + +  +S R 
Sbjct: 70  PVFNQMQQQFSQVPADLSSMDNLKTSVTNGVAPLQKFMTHNT---DPDILIHLQENSVRM 126

Query: 159 TDITKNDHIEYR---ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
                +D +      ++IP+F++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ 
Sbjct: 127 WPKEMSDSVNKDNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVA 186

Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           P ++SLP K++ FVLI+GW+ L++ L  S++
Sbjct: 187 PMTLSLPLKMLLFVLINGWTRLLDGLFYSYL 217


>gi|327192841|gb|EGE59767.1| type III secretion system protein [Rhizobium etli CNPAF512]
          Length = 204

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 70/199 (35%), Positives = 116/199 (58%), Gaps = 2/199 (1%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108
           +S+ P++ ++ T F +  +V  I+R  +G+   PPNL++ ++A+ ++ +VM+P L  S +
Sbjct: 4   ISMLPVIAVIATSFTKISVVLLIVRNAIGIQQTPPNLLVFAIAIVLSAFVMNPVLQNSWQ 63

Query: 109 MGIQPLMNNQITETTA--IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
           + +    +       A  + +VA P   FM   +  +    F+  +     N   T    
Sbjct: 64  LLLAHSGDFGTVSGMADGMIKVAAPLKDFMLKFSDAEVRDFFVQASQKIWANAPATPIAS 123

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
            +  +L PSF++SEL R+FEIGFLI LPFL+ID  V+ I++A+GM M+ PT +S P K++
Sbjct: 124 DDITVLTPSFLVSELTRAFEIGFLIYLPFLMIDFAVSAILVALGMQMMSPTVVSTPLKLL 183

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FV IDGW  L+E LV S+
Sbjct: 184 LFVSIDGWRRLLEGLVLSY 202


>gi|159024057|gb|ABW87285.1| HrcR [Xanthomonas fuscans subsp. fuscans]
          Length = 214

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 68/209 (32%), Positives = 121/209 (57%), Gaps = 21/209 (10%)

Query: 48  ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107
           +L + P   ++VT + + ++V  +LR  +G+  VPPN+V+  +AL ++ +VM+P      
Sbjct: 15  MLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAP------ 68

Query: 108 EMGIQPLMNNQITETTA--------IQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SH 156
            +G++     Q   T +        +    EPF  F+  +TRE++   FM  A       
Sbjct: 69  -VGMEAFKAAQNYGTGSDNSRVVVLLDACREPFRQFLLKHTREREKVFFMRSAQQIWPKD 127

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
           +   +  +D +   +L P+F +SEL  +F IGFL+ L F++ID++VA  +MAMG+  + P
Sbjct: 128 KAATLKSDDLL---VLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTP 184

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           T++++PFK++ FV +DGWS+L+  LV S+
Sbjct: 185 TNVAIPFKLLLFVAMDGWSMLMHGLVLSY 213


>gi|269138236|ref|YP_003294936.1| type three secretion apparatus protein R [Edwardsiella tarda
           EIB202]
 gi|61743015|gb|AAX55235.1| EsaR [Edwardsiella tarda]
 gi|62199649|gb|AAX76923.1| EsaR [Edwardsiella tarda]
 gi|267983896|gb|ACY83725.1| type three secretion apparatus protein R [Edwardsiella tarda
           EIB202]
 gi|304558279|gb|ADM40943.1| EsaR [Edwardsiella tarda FL6-60]
          Length = 215

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 66/196 (33%), Positives = 118/196 (60%), Gaps = 11/196 (5%)

Query: 56  LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115
           ++M T F +  +VF++LR  +G+  +PPN+ +  LAL +T ++M+P     +   +Q  +
Sbjct: 24  IVMGTSFLKLSVVFALLRNALGIQQIPPNIALYGLALILTLFIMTP-----VGTAVQARL 78

Query: 116 NNQITE--TTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169
            +   E  TT + R+++    P+  F+R +T    L  F  +A  S   +   +      
Sbjct: 79  ADAPAEAQTTLLARLSDNTLDPYRQFLRQHTSATQLHFFRQVATKSWPASVREQISDDSL 138

Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
            +L+P+F +S+L  +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +IS+PFK++ F+
Sbjct: 139 LLLMPAFAVSQLVEAFQIGLLLFLPFIAIDLIVSNILLAMGMMMVSPMTISMPFKLLVFI 198

Query: 230 LIDGWSLLVENLVKSF 245
           L+ GW  L+  L+ S+
Sbjct: 199 LVGGWDKLLGQLLLSY 214


>gi|119714990|ref|YP_921955.1| flagellar biosynthesis protein FliP [Nocardioides sp. JS614]
 gi|119535651|gb|ABL80268.1| flagellar biosynthetic protein FliP [Nocardioides sp. JS614]
          Length = 266

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 85/212 (40%), Positives = 139/212 (65%), Gaps = 5/212 (2%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           S ST +    G+ T++S+ P +L+  T F +  +V  + R  +G+   PPN V+  LALF
Sbjct: 58  SPSTSVTVLIGL-TLISLLPAILLSCTAFTKIFVVLGLTRNALGLQQTPPNQVLAGLALF 116

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           ++ +VM P L    E+G+QP +N   T + AIQ   EP   FM +NT + +L L  ++A 
Sbjct: 117 LSLFVMGPVLSDINEVGLQPYLNGDKTTSVAIQDGIEPLRDFMLDNTDDDELMLLTNVA- 175

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
              R+    + D +    LIP+F+++EL+++F IGF+I +PFL+ID++V+  +MA+GMMM
Sbjct: 176 --GRDLPEDRAD-VSTATLIPAFVLTELKQAFIIGFIIFIPFLVIDLVVSGALMALGMMM 232

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +PP  +SLPFK++ FVL+DGW+L++++LV S+
Sbjct: 233 MPPVMVSLPFKLLLFVLVDGWALVIKSLVASY 264


>gi|58579704|ref|YP_198720.1| type III secretion system protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58424298|gb|AAW73335.1| hrpD2 [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 226

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 66/202 (32%), Positives = 119/202 (58%), Gaps = 7/202 (3%)

Query: 48  ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107
           +L + P   ++VT + + ++V  +LR  +G+  VPPN+V+  +AL ++ +VM+P    + 
Sbjct: 27  MLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF 86

Query: 108 EMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITK 163
           +        +  +    +     EPF  F+  +T E++ + FM  A       + T +  
Sbjct: 87  KAAQNYGAGSDNSRIVVLLDACREPFRQFLLKHTPEREKAFFMRSAQQIWPKDKATTLKS 146

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
           +D +   IL P+F +SEL  +F IGFL+ L F++ID++VA  +MAMG+  + PT++++PF
Sbjct: 147 DDLL---ILAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPF 203

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K++ FV +DGWS+L+  LV S+
Sbjct: 204 KLLLFVAMDGWSMLIHGLVLSY 225


>gi|46445836|ref|YP_007201.1| type III secretion system protein [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399477|emb|CAF22926.1| putative type III secretion inner membrane protein SctR [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 323

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 123/208 (59%), Gaps = 19/208 (9%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +++++T F + ++V S+LRT +G+   PPN +I  +A  ++ ++M PT  +  +    
Sbjct: 119 PFIIMILTSFLKIVVVLSLLRTALGVQQAPPNQIINGVAFLLSLFIMYPTAIKMYDAAQT 178

Query: 113 PLMNNQITET-------TAIQRVAE----PFWVFMRNNTREKDLSLFMDMAH----SSHR 157
            +    + E+       T +  VA     P   +++ N+  +  +LF  + +      +R
Sbjct: 179 AINQPNVPESFLSPGSSTYVIEVASAASGPMKEYLKRNSSSRHQALFYRLVYRGLPEDYR 238

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
            T +  +D I   +L+PS++  +L+ +FEIG LI +PF +ID++ + I++AMGMMML P 
Sbjct: 239 ET-LKPDDFI---VLVPSYITGQLKDAFEIGVLIYIPFFVIDLVTSNILLAMGMMMLSPV 294

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +IS+P K+   V++DGW++L+E LVK+F
Sbjct: 295 TISMPLKLFLLVMLDGWTILIEGLVKTF 322


>gi|34498458|ref|NP_902673.1| flagellar biosynthesis protein FliP [Chromobacterium violaceum ATCC
           12472]
 gi|34104313|gb|AAQ60672.1| flagellar biosynthetic protein fliP [Chromobacterium violaceum ATCC
           12472]
          Length = 248

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 81/213 (38%), Positives = 128/213 (60%), Gaps = 7/213 (3%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D +I T I+    + T L + P+L++M+T F RF+IV S+LR  +G+    PN +I  +A
Sbjct: 39  DFTIKTQILI---LMTALGLLPVLVLMMTSFTRFVIVLSLLRQALGLQQGLPNRLITGVA 95

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           L +T  VM P   +     + P   ++IT   A++  A+P   FM   T +  L+    +
Sbjct: 96  LILTLLVMRPVGLQVWNEAMVPFDQDKITMQQALEIAAKPVSRFMLAQTGKTALA---QV 152

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           A  S         DH  + + + +F++SEL+ +F+IG ++ +PFL+ID++V++++MAMGM
Sbjct: 153 ARLSGEENVARPEDH-AFTVKLAAFVLSELKTAFQIGCMLFIPFLVIDLVVSSVLMAMGM 211

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           MML P  ISLP K++ FVL+DGWSL V  LV S
Sbjct: 212 MMLSPLVISLPLKLLLFVLVDGWSLTVNTLVTS 244


>gi|12802687|gb|AAK08058.1|AF320050_2 HrcR [Xanthomonas oryzae pv. oryzae]
 gi|9711593|dbj|BAB07862.1| HrcR [Xanthomonas oryzae pv. oryzae]
 gi|24251298|gb|AAN46417.1| HrcR [Xanthomonas oryzae pv. oryzae]
          Length = 200

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 66/202 (32%), Positives = 119/202 (58%), Gaps = 7/202 (3%)

Query: 48  ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107
           +L + P   ++VT + + ++V  +LR  +G+  VPPN+V+  +AL ++ +VM+P    + 
Sbjct: 1   MLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF 60

Query: 108 EMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITK 163
           +        +  +    +     EPF  F+  +T E++ + FM  A       + T +  
Sbjct: 61  KAAQNYGAGSDNSRIVVLLDACREPFRQFLLKHTPEREKAFFMRSAQQIWPKDKATTLKS 120

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
           +D +   IL P+F +SEL  +F IGFL+ L F++ID++VA  +MAMG+  + PT++++PF
Sbjct: 121 DDLL---ILAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPF 177

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K++ FV +DGWS+L+  LV S+
Sbjct: 178 KLLLFVAMDGWSMLIHGLVLSY 199


>gi|188532666|ref|YP_001906463.1| type III secretion system protein [Erwinia tasmaniensis Et1/99]
 gi|188027708|emb|CAO95561.1| HrcR protein (hrp cluster) [Erwinia tasmaniensis Et1/99]
          Length = 217

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 127/220 (57%), Gaps = 27/220 (12%)

Query: 42  TFGIF-TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100
           TF +F   LS+ P+L+I+ TCF +  +V  I R  +G+  VPPN+ +  +AL  T +VM+
Sbjct: 10  TFALFLGALSLIPMLMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMA 69

Query: 101 PTLDRSIEMGIQPLMNNQITETTA-----------IQRVAEPFWVFMRNNTREKDLSLFM 149
           P  ++         M  Q +++ A           +     P   FM +NT   D  + +
Sbjct: 70  PVFNQ---------MQQQFSQSPADLSSMDSLKNSVTHGVAPLQKFMTHNT---DPDILI 117

Query: 150 DMAHSSHRNTDITKNDHIEYR---ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
            +  +S R      +D +      ++IP+F++SEL+  F+IGFLI +PF++ID+IV+ ++
Sbjct: 118 HLQENSVRMWPKEMSDSVSKDNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVL 177

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +A+GM M+ P ++SLP K++ FVLI+GW+ L++ L  S++
Sbjct: 178 LALGMQMVAPMTLSLPLKMLLFVLINGWTRLLDGLFYSYL 217


>gi|84621752|ref|YP_449124.1| type III secretion system protein [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|188574345|ref|YP_001911274.1| type III secretion system protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|7288131|dbj|BAA92826.1| hrpD2 [Xanthomonas oryzae pv. oryzae]
 gi|50428356|dbj|BAD29993.1| HrcR [Xanthomonas oryzae pv. oryzae]
 gi|84365692|dbj|BAE66850.1| HrcR protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188518797|gb|ACD56742.1| type III secretion apparatus protein, YscR/HrcR family [Xanthomonas
           oryzae pv. oryzae PXO99A]
          Length = 214

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 66/202 (32%), Positives = 119/202 (58%), Gaps = 7/202 (3%)

Query: 48  ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107
           +L + P   ++VT + + ++V  +LR  +G+  VPPN+V+  +AL ++ +VM+P    + 
Sbjct: 15  MLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF 74

Query: 108 EMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITK 163
           +        +  +    +     EPF  F+  +T E++ + FM  A       + T +  
Sbjct: 75  KAAQNYGAGSDNSRIVVLLDACREPFRQFLLKHTPEREKAFFMRSAQQIWPKDKATTLKS 134

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
           +D +   IL P+F +SEL  +F IGFL+ L F++ID++VA  +MAMG+  + PT++++PF
Sbjct: 135 DDLL---ILAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPF 191

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K++ FV +DGWS+L+  LV S+
Sbjct: 192 KLLLFVAMDGWSMLIHGLVLSY 213


>gi|315126005|ref|YP_004068008.1| flagellar biosynthesis protein FliP [Pseudoalteromonas sp. SM9913]
 gi|315014519|gb|ADT67857.1| flagellar biosynthesis protein FliP [Pseudoalteromonas sp. SM9913]
          Length = 250

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 75/193 (38%), Positives = 117/193 (60%), Gaps = 4/193 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P LL+++T F R IIV +ILR  MG+   PPN ++I ++L +T  +M P      +    
Sbjct: 58  PALLMVLTSFTRIIIVLAILRQAMGLQQSPPNKILIGISLMLTMLIMRPVWQDIYQNAYT 117

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P     I    A+    +P   FM   TRE +L   + +A+     T     + I + +L
Sbjct: 118 PFQQQTIGLEDALLTAEKPLRAFMLRQTRESELRQVLLIANEPTTLT----AEEIPFEVL 173

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           +P+F++SEL  +F+IGF++ +PFLIID++V++++M+MGMMML P  ISLPFK++ FVL D
Sbjct: 174 MPAFVLSELTTAFQIGFMLFIPFLIIDLVVSSVLMSMGMMMLSPLIISLPFKLMVFVLAD 233

Query: 233 GWSLLVENLVKSF 245
           GWS++   L  +F
Sbjct: 234 GWSMIAGTLAATF 246


>gi|325917011|ref|ZP_08179250.1| HrcR protein [Xanthomonas vesicatoria ATCC 35937]
 gi|325536762|gb|EGD08519.1| HrcR protein [Xanthomonas vesicatoria ATCC 35937]
          Length = 214

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 118/202 (58%), Gaps = 7/202 (3%)

Query: 48  ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107
           +L + P   ++VT + + ++V  +LR  +G+  VPPN+V+  +AL ++ +VM+P    + 
Sbjct: 15  MLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF 74

Query: 108 EMG--IQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS--SHRNTDITK 163
           +      P  +N       +    EPF  F+  +T E++ + F+  A         D  K
Sbjct: 75  KAAQNYSPGADNSRV-VVLLDACREPFRQFLLKHTHEREKAFFIRSAQQIWPKDKADTLK 133

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
            D  +  +L P+F +SEL  +F IGFL+ L F++ID++VA  +MAMG+  + PT++++PF
Sbjct: 134 PD--DLLVLAPAFTLSELTDAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPF 191

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K++ FV +DGWS+L+  LV S+
Sbjct: 192 KLLLFVALDGWSMLIHGLVLSY 213


>gi|171322880|ref|ZP_02911585.1| Yop virulence translocation R [Burkholderia ambifaria MEX-5]
 gi|171091754|gb|EDT37284.1| Yop virulence translocation R [Burkholderia ambifaria MEX-5]
          Length = 216

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 124/203 (61%), Gaps = 8/203 (3%)

Query: 48  ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107
           ++S+ P + ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ ++ Y+M+P    + 
Sbjct: 16  VMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAPIGFAAQ 75

Query: 108 EMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAH---SSHRNTDIT 162
           +      ++ Q T+    A     EPF  F+  ++RE++   F+  A           + 
Sbjct: 76  QQLQGQTLSPQPTQAMLQAFGAAKEPFRQFLAAHSREREKRFFLRSASVIWPKAAAAQLR 135

Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
           ++D I   +L P+F ++++  +F IGF++ + F+I+D+++A ++M+MGM  + PT++++P
Sbjct: 136 EDDLI---VLAPAFTLAQMTDAFRIGFILYIAFIIVDLVIANVLMSMGMNQVQPTNVAIP 192

Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245
           FK++ FV++DGWS LV  LV ++
Sbjct: 193 FKLMLFVVMDGWSTLVHGLVLTY 215


>gi|206895630|ref|YP_002246700.1| flagellar biosynthetic protein FliP [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738247|gb|ACI17325.1| flagellar biosynthetic protein FliP [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 218

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 114/201 (56%), Gaps = 8/201 (3%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T+ ++AP  ++  T F R ++VF+ +R+ +G+   PP  V  +LAL +TF +M P   
Sbjct: 25  LLTVFTLAPSFIMFFTSFLRILVVFAFMRSALGLQQFPPAQVFTALALILTFLIMGPVFS 84

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
           +  +    P    Q+     +    +P   +M    + ++L+    ++ +  +N + T  
Sbjct: 85  QVYQQAWVPYSQGQMDFQQFLSAAEKPVGDWMLKQVKPEELNTMASISGTDPKNPNFTT- 143

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
                  L  +FM+SEL+ +F +G L+ LPF+ +D+I+A+++M++GM M+PP  ISLP K
Sbjct: 144 -------LASAFMVSELKTAFTMGLLLYLPFIALDVIIASVLMSLGMFMIPPAMISLPLK 196

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FV  +GW  ++  LV+SF
Sbjct: 197 ILLFVAANGWDTVIMGLVRSF 217


>gi|238899257|ref|YP_002924940.1| type III secretion system protein [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229467018|gb|ACQ68792.1| type III secretion system protein [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 216

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 76/202 (37%), Positives = 129/202 (63%), Gaps = 6/202 (2%)

Query: 48  ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRS 106
           +LSI P+L++M TCF +  +VFS+LR  +G+   PPN+ I  LAL +T ++M+P  L+ +
Sbjct: 16  LLSIFPLLVVMGTCFLKLSVVFSLLRNALGVQQTPPNIAIYGLALVLTIFIMAPVGLEVN 75

Query: 107 IEMGIQPLMNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHSS--HRNTDITK 163
             +  + L  +  T    I   A +P+  F+ +NT  + ++ F DM  ++   +  D   
Sbjct: 76  ESLKGEKLSQDFGTFVEQINSKALDPYRQFLLHNTSSEQINFFSDMIKNNWPKKYRDKVA 135

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
           +D +   IL+P+F +S+L  +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPF
Sbjct: 136 SDSL--LILMPAFTVSQLIEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMMSPMTISLPF 193

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K++ F+L+ GW +++  L  S+
Sbjct: 194 KILIFLLVGGWDMILGQLAGSY 215


>gi|167828878|ref|ZP_02460349.1| type III secretion system protein [Burkholderia pseudomallei 9]
 gi|226198433|ref|ZP_03794001.1| type III secretion inner membrane protein SctR [Burkholderia
           pseudomallei Pakistan 9]
 gi|225929490|gb|EEH25509.1| type III secretion inner membrane protein SctR [Burkholderia
           pseudomallei Pakistan 9]
          Length = 216

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 121/200 (60%), Gaps = 2/200 (1%)

Query: 48  ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107
           ++S+ P + ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ ++ Y+M+P    + 
Sbjct: 16  VMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAPIGFAAQ 75

Query: 108 EMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165
           +      M+ Q T+    A     EPF  F+  ++RE++   F+  A          +  
Sbjct: 76  QQLQGQAMSPQPTQAMLQAFGAAKEPFRRFLAAHSREREKRFFLRSASVIWPQAAAAQLR 135

Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225
             +  +L P+F ++++  +F IGF++ + F+I+D+++A ++M+MGM  + PT++++PFK+
Sbjct: 136 DDDLIVLAPAFTLAQMTDAFRIGFILYIAFIIVDLVIANVLMSMGMNQVQPTNVAIPFKL 195

Query: 226 IFFVLIDGWSLLVENLVKSF 245
           + FV++DGWS LV  LV ++
Sbjct: 196 MLFVVMDGWSTLVHGLVLTY 215


>gi|256259402|gb|ACU65039.1| HrcR [Pseudomonas syringae pv. syringae]
          Length = 208

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/212 (35%), Positives = 123/212 (58%), Gaps = 26/212 (12%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108
           LS+ P LL++ T F +   V  I R  +G+  VPPN+ +  +AL  T +VM+P       
Sbjct: 9   LSLLPFLLVVCTSFLKIASVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVFSEIAT 68

Query: 109 MGI-QPLMNNQITETTAIQRVAE----PFWVFMRNNT--------REKDLSLF-MDMAHS 154
           +    PL   Q+ +T  + R A+    P   FM +N          E  L ++  DMA +
Sbjct: 69  IAQDNPL---QLRDTRDLTRSAKALLAPLQAFMNHNVDPDVLTHLHENALRMWPKDMAAA 125

Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
           + R          +  +LIP+F++SEL+ +FEIGFLI +PF++ID+IV+ +++A+GM M+
Sbjct: 126 ASRG---------DLLLLIPAFVLSELQAAFEIGFLIYIPFIVIDLIVSNLLLALGMQMV 176

Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
            P +ISLP K++ FVL+ GW+ L+++L  S++
Sbjct: 177 SPMTISLPLKILLFVLVSGWTRLLDSLFYSYM 208


>gi|323972752|gb|EGB67952.1| flagellar biosynthetic protein FliP [Escherichia coli TA007]
          Length = 221

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/189 (38%), Positives = 111/189 (58%), Gaps = 9/189 (4%)

Query: 9   LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66
           L+L+TP L FA+  L  + + P      +W   V+T    T L+  P +L+M+T F R I
Sbjct: 12  LWLITP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +I+   A++
Sbjct: 69  IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           + A+P   FM   TRE DL LF  +A++      +   + +  RIL+P+++ SEL+ +F+
Sbjct: 129 KGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQ 184

Query: 187 IGFLIILPF 195
           IGF I  PF
Sbjct: 185 IGFTIFHPF 193


>gi|302185358|ref|ZP_07262031.1| type III secretion system protein [Pseudomonas syringae pv.
           syringae 642]
          Length = 217

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/212 (35%), Positives = 123/212 (58%), Gaps = 26/212 (12%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108
           LS+ P LL++ T F +   V  I R  +G+  VPPN+ +  +AL  T +VM+P       
Sbjct: 18  LSLLPFLLVVCTSFLKIASVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVFSEIAT 77

Query: 109 MGI-QPLMNNQITETTAIQRVAE----PFWVFMRNNT--------REKDLSLF-MDMAHS 154
           +    PL   Q+ +T  + R A+    P   FM +N          E  L ++  DMA +
Sbjct: 78  IAQDNPL---QLRDTRDLTRSAKALLAPLQAFMNHNVDPDVLTHLHENALRMWPKDMAAA 134

Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
           + R          +  +LIP+F++SEL+ +FEIGFLI +PF++ID+IV+ +++A+GM M+
Sbjct: 135 ASRG---------DLLLLIPAFVLSELQAAFEIGFLIYIPFIVIDLIVSNLLLALGMQMV 185

Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
            P +ISLP K++ FVL+ GW+ L+++L  S++
Sbjct: 186 SPMTISLPLKILLFVLVSGWTRLLDSLFYSYM 217


>gi|94986979|ref|YP_594912.1| type III secretion system protein [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731228|emb|CAJ54591.1| translocation protein in type III secretion [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 216

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 124/203 (61%), Gaps = 9/203 (4%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108
           L +AP +++MVT + + ++V S++R  +G+  VPP +V+  LA+ ++ ++M+P   +  +
Sbjct: 16  LGLAPFVIMMVTSYVKIVVVTSLIRNALGVQQVPPAIVMNGLAIILSIFIMAPVYMKMED 75

Query: 109 MGIQ---PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDIT 162
           + ++   P     +    A+     P   F+  N  E  +   M  A       ++  I+
Sbjct: 76  LYLKTALPSSPAALEVIKALYDATPPLREFLIRNADESTIRGLMVTAKRIWPKDQHETIS 135

Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
           +N+ +   I+IP+F I+EL +SF+IGFL+ LPF+ ID++V+ I++AMGMMM+ P +ISLP
Sbjct: 136 RNNLL---IIIPAFTITELTKSFQIGFLLYLPFVAIDLVVSNILLAMGMMMVSPMTISLP 192

Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245
           FK++ FV +DGW  + + L+ S+
Sbjct: 193 FKLLLFVTLDGWLKISQGLMLSY 215


>gi|329902179|ref|ZP_08273068.1| type III secretion protein HrcR [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548850|gb|EGF33479.1| type III secretion protein HrcR [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 217

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 116/204 (56%), Gaps = 4/204 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           +  +L++ P++++  T F +  +V  + R  +G+  VPP L I  +AL +T +VMSPT+ 
Sbjct: 14  LLAMLALVPLIVVTTTSFLKIALVMLVTRNALGVQQVPPTLAIYGIALSLTLFVMSPTV- 72

Query: 105 RSIEMGIQPLMNNQITETTAI---QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
           + I   +  +   Q T    +   Q   EP   FM  + + +   +F+  A         
Sbjct: 73  QEIGNHVAAMEAEQTTTKRGVADAQIAFEPLRTFMLKHCKPEQREIFLASAKKLWPKEFA 132

Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
            +    +  +L+P+F++SEL+  +E+ FLI +PF++ID++V+ ++MA+GM  + P +I++
Sbjct: 133 AEAKSTDVLVLVPAFVVSELQTGYEVAFLIYIPFVVIDLLVSNLLMALGMQQVSPQTITV 192

Query: 222 PFKVIFFVLIDGWSLLVENLVKSF 245
           P K++ FV++DGW  L+  L  S+
Sbjct: 193 PLKLLLFVMVDGWGKLLNALAMSY 216


>gi|323388136|gb|ADX60332.1| type III secretion protein RscR [Pseudomonas fluorescens]
          Length = 217

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/216 (34%), Positives = 127/216 (58%), Gaps = 34/216 (15%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108
           LS+ P+LLI+ T F + +IV  I R  +G+  VPP++ I  +AL  T ++M+P       
Sbjct: 18  LSLMPMLLIICTSFLKIVIVLMITRNAIGVQQVPPSMAINGIALAATLFIMAP------- 70

Query: 109 MGIQPLMNNQIT--ETTAIQRVAE-------PFWVFMRNNTREKDLSLFMD--------- 150
           +G Q   N + +  +T+++Q + E       P   FM  NT    L+  ++         
Sbjct: 71  VGYQIAENVKASPVDTSSVQSLLETGQAAIQPLRAFMLRNTDADVLTHLLENSARMWPPE 130

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           MA S+ R   I         +L+P+F++S+L+  FEIGFLI +PF++ID+IV+ +++A+G
Sbjct: 131 MAQSTQREDLI---------LLVPAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALG 181

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           M M+ P +ISLP K++ FV++ GWS L+++L  S++
Sbjct: 182 MQMVSPMTISLPLKLLLFVMVSGWSRLLDSLFLSYL 217


>gi|167840284|ref|ZP_02466968.1| type III secretion system protein [Burkholderia thailandensis
           MSMB43]
          Length = 216

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 121/200 (60%), Gaps = 2/200 (1%)

Query: 48  ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107
           ++S+ P + ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ ++ Y+M+P    + 
Sbjct: 16  VMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAPIGFAAQ 75

Query: 108 EMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165
           +      ++ Q T+    A     EPF  F+  ++RE++   F+  A          +  
Sbjct: 76  QQLQGQALSPQPTQAMLQAFGAAKEPFRRFLAAHSREREKRFFLRSASVIWPKAAAAQLR 135

Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225
             +  +L P+F ++++  +F IGFL+ + F+I+D+++A ++M+MGM  + PT++++PFK+
Sbjct: 136 DDDLIVLAPAFTLAQMTDAFRIGFLLYIAFIIVDLVIANVLMSMGMNQVQPTNVAIPFKL 195

Query: 226 IFFVLIDGWSLLVENLVKSF 245
           + FV++DGWS LV  LV ++
Sbjct: 196 MLFVVMDGWSTLVHGLVLTY 215


>gi|171316782|ref|ZP_02905993.1| Yop virulence translocation R [Burkholderia ambifaria MEX-5]
 gi|171098040|gb|EDT42856.1| Yop virulence translocation R [Burkholderia ambifaria MEX-5]
          Length = 216

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 121/204 (59%), Gaps = 10/204 (4%)

Query: 48  ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP---TLD 104
           ++S+ P + ++VT + + ++V  +LR  +G+  VPPN+VI  +A+ ++ YVM+P   +  
Sbjct: 16  LISLVPFVAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVINGIAILVSVYVMAPVGMSAL 75

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH---SSHRNTDI 161
           R IE    P  N        +    EPF  F+  +   ++   F+  A           +
Sbjct: 76  RDIESK-PPAGNASEAVIQILGNAREPFREFLAKHAATREKRFFLRSASIVWPKEAAAAL 134

Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
            +ND I   +L P+F +++L  +F+IGFL+ + F+++D+++A +++AMG+  + PT++++
Sbjct: 135 QENDLI---VLAPAFALTQLTDAFKIGFLLYIAFIVLDLVIANVLLAMGLNQVNPTNVAI 191

Query: 222 PFKVIFFVLIDGWSLLVENLVKSF 245
           PFK++ FV++DGWS L+  L+ SF
Sbjct: 192 PFKLLLFVVMDGWSTLIHGLIVSF 215


>gi|29840693|ref|NP_829799.1| type III secretion system protein [Chlamydophila caviae GPIC]
 gi|29835043|gb|AAP05677.1| type III secretion inner membrane protein SctR [Chlamydophila
           caviae GPIC]
          Length = 303

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 123/212 (58%), Gaps = 11/212 (5%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-- 102
           I   L+++P L++++T + + II   +LR  +G+   PP+ V+  +AL ++ YVM PT  
Sbjct: 91  ILIFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGV 150

Query: 103 -----LDRSIEMGIQP--LMNNQITETT--AIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
                  + I+    P  L + +  ET   A+ +  EP   F+  NT +  +  F  ++ 
Sbjct: 151 AMYNDARKEIQGNAIPRDLFSAEGAETVFVALNKSKEPLRSFLIRNTPKAQIQSFYKISQ 210

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
            +            ++ I+IP+F++ +++ +FEIG LI LPF +ID++ A +++AM MMM
Sbjct: 211 KTFPQEIREHMTASDFVIIIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQMMM 270

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           L P SISLP K++  V++DGW+LL++ L+ SF
Sbjct: 271 LSPLSISLPLKLLLVVMVDGWTLLLQGLMISF 302


>gi|83718233|ref|YP_438951.1| type III secretion system protein [Burkholderia thailandensis E264]
 gi|167577333|ref|ZP_02370207.1| type III secretion system protein [Burkholderia thailandensis
           TXDOH]
 gi|167615481|ref|ZP_02384116.1| type III secretion system protein [Burkholderia thailandensis Bt4]
 gi|257142055|ref|ZP_05590317.1| type III secretion system protein [Burkholderia thailandensis E264]
 gi|83652058|gb|ABC36122.1| type III secretion inner membrane protein SctR [Burkholderia
           thailandensis E264]
          Length = 216

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 121/200 (60%), Gaps = 2/200 (1%)

Query: 48  ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107
           ++S+ P + ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ ++ Y+M+P    + 
Sbjct: 16  VMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAPIGFAAQ 75

Query: 108 EMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165
           +      ++ Q T+    A     EPF  F+  ++RE++   F+  A          +  
Sbjct: 76  QQLQGQALSPQPTQAMLQAFGAAKEPFRQFLAAHSREREKRFFLRSASVVWPKAAAAQLR 135

Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225
             +  +L P+F ++++  +F IGF++ + F+I+D+++A ++M+MGM  + PT++++PFK+
Sbjct: 136 EDDLIVLAPAFTLAQMTDAFRIGFILYIAFVIVDLVIANVLMSMGMNQVQPTNVAIPFKL 195

Query: 226 IFFVLIDGWSLLVENLVKSF 245
           + FV++DGWS LV  LV ++
Sbjct: 196 MLFVVMDGWSTLVHGLVLTY 215


>gi|330443947|ref|YP_004376933.1| YscR/HrcR family type III secretion apparatus protein
           [Chlamydophila pecorum E58]
 gi|328807057|gb|AEB41230.1| type III secretion apparatus protein, YscR/HrcR family
           [Chlamydophila pecorum E58]
          Length = 305

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/212 (33%), Positives = 121/212 (57%), Gaps = 11/212 (5%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-- 102
           I   L+++P L++++T + + II   +LR  +G+   PP+ V+  +AL ++ YVM PT  
Sbjct: 93  ILIFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGA 152

Query: 103 -----LDRSIEMGIQP--LMNNQITETT--AIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
                  + IE    P  L   +  ET   A  +  EP   F+  NT +  +  F  ++ 
Sbjct: 153 AMYKDAKKEIEANTIPRNLFTAEGAETVFVAFNKSKEPLRNFLIRNTPKAQIQSFYKISQ 212

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
            +            ++ I+IP+F++ +++ +FEIG +I LPF +ID++ A I++AM MMM
Sbjct: 213 KTFPAEIREHLSATDFVIVIPAFIMGQIKNAFEIGVMIYLPFFVIDLVTANILVAMQMMM 272

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           L P SISLP K++  V++DGW+LL++ L+ SF
Sbjct: 273 LSPLSISLPLKLLLVVMVDGWTLLLQGLMISF 304


>gi|15042142|gb|AAK81923.1|AF292566_7 RscR [Pseudomonas fluorescens]
          Length = 217

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/204 (34%), Positives = 125/204 (61%), Gaps = 10/204 (4%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT---LDR 105
           LS+ P+LL++ T F + +IV  I R  +G+  VPP++ I  +AL  T ++M+P    +  
Sbjct: 18  LSLMPMLLVVCTAFLKIVIVLMITRNAIGVQQVPPSMAINGIALATTLFIMAPVGYEIAE 77

Query: 106 SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDIT 162
           S++     L N Q    TA + + +P   FM  N   + L+  ++       +    ++ 
Sbjct: 78  SVKALPLDLSNVQTLLQTANEAI-KPLRAFMLRNIDPEVLTHLLENTARLWPAQMAQEVQ 136

Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
           + D I   +LIP+F++S+L+  FEIGFLI +PF++ID+IV+ +++A+GM M+ P +ISLP
Sbjct: 137 REDLI---LLIPAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTISLP 193

Query: 223 FKVIFFVLIDGWSLLVENLVKSFI 246
            K++ FV++ GWS L+++L  S++
Sbjct: 194 LKLLLFVMVSGWSRLLDSLFLSYL 217


>gi|167566298|ref|ZP_02359214.1| type III secretion system protein [Burkholderia oklahomensis EO147]
 gi|167573400|ref|ZP_02366274.1| type III secretion system protein [Burkholderia oklahomensis C6786]
          Length = 216

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 121/200 (60%), Gaps = 2/200 (1%)

Query: 48  ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107
           ++S+ P + ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ ++ Y+M+P    + 
Sbjct: 16  VMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAPIGFAAQ 75

Query: 108 EMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165
           +      ++ Q T+    A     EPF  F+  ++RE++   F+  A          +  
Sbjct: 76  QQLQGQALSPQPTQAMLQAFGAAKEPFRQFLAAHSREREKRFFLRSASVIWPKAAAAQLR 135

Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225
             +  +L P+F ++++  +F IGF++ + F+I+D+++A ++M+MGM  + PT++++PFK+
Sbjct: 136 EDDLIVLAPAFTLAQMTDAFRIGFILYIAFIIVDLVIANVLMSMGMNQVQPTNVAIPFKL 195

Query: 226 IFFVLIDGWSLLVENLVKSF 245
           + FV++DGWS LV  LV ++
Sbjct: 196 MLFVVMDGWSTLVHGLVLTY 215


>gi|172064928|ref|YP_001815640.1| Yop virulence translocation R [Burkholderia ambifaria MC40-6]
 gi|171997170|gb|ACB68087.1| Yop virulence translocation R [Burkholderia ambifaria MC40-6]
          Length = 218

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 119/201 (59%), Gaps = 4/201 (1%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108
           +S+ P + ++ T + + ++V  +LR  +G+  VPPN+V+  +A+ ++ YVM+P   ++++
Sbjct: 17  ISLIPFVAMVATSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAVLVSAYVMAPIGMQAMQ 76

Query: 109 ----MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
               M   P  +  +    A     EPF  F++ +  E++   F+  A          K 
Sbjct: 77  TMQTMHRTPGSDTSLVVLDAFDAAKEPFRAFLKKHAHEREKRFFVRSATVVWPKDMAAKV 136

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
              +  +L P+F ++E+  +F+IGFL+ + F+++D+++A ++MAMG+  + PT++++PFK
Sbjct: 137 REDDLIVLAPAFTLTEMADAFKIGFLLYIAFIVVDLVIANVLMAMGLNQVQPTNVAIPFK 196

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FV++ GWS L+  LV ++
Sbjct: 197 LLLFVVMSGWSTLIHGLVMTY 217


>gi|53716433|ref|YP_106203.1| type III secretion system protein [Burkholderia mallei ATCC 23344]
 gi|53722640|ref|YP_111625.1| type III secretion system protein [Burkholderia pseudomallei
           K96243]
 gi|76819625|ref|YP_335835.1| type III secretion system protein [Burkholderia pseudomallei 1710b]
 gi|124381437|ref|YP_001025753.1| type III secretion system protein [Burkholderia mallei NCTC 10229]
 gi|126447834|ref|YP_001077838.1| type III secretion system protein [Burkholderia mallei NCTC 10247]
 gi|126457083|ref|YP_001076228.1| type III secretion system protein [Burkholderia pseudomallei 1106a]
 gi|134282115|ref|ZP_01768821.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 305]
 gi|167004563|ref|ZP_02270321.1| type III secretion inner membrane protein SctR [Burkholderia mallei
           PRL-20]
 gi|167724361|ref|ZP_02407597.1| type III secretion system protein [Burkholderia pseudomallei DM98]
 gi|167820506|ref|ZP_02452186.1| type III secretion system protein [Burkholderia pseudomallei 91]
 gi|167850341|ref|ZP_02475849.1| type III secretion system protein [Burkholderia pseudomallei B7210]
 gi|167907266|ref|ZP_02494471.1| type III secretion system protein [Burkholderia pseudomallei NCTC
           13177]
 gi|167915628|ref|ZP_02502719.1| type III secretion system protein [Burkholderia pseudomallei 112]
 gi|238563924|ref|ZP_04610801.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia mallei GB8 horse 4]
 gi|242311808|ref|ZP_04810825.1| type III secretion inner membrane protein SctR [Burkholderia
           pseudomallei 1106b]
 gi|254176224|ref|ZP_04882882.1| type III secretion inner membrane protein SctR [Burkholderia mallei
           ATCC 10399]
 gi|254185081|ref|ZP_04891670.1| type III secretion inner membrane protein SctR [Burkholderia
           pseudomallei 1655]
 gi|254186948|ref|ZP_04893464.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254194505|ref|ZP_04900937.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei S13]
 gi|254201084|ref|ZP_04907449.1| type III secretion inner membrane protein SctR [Burkholderia mallei
           FMH]
 gi|254205049|ref|ZP_04911402.1| type III secretion inner membrane protein SctR [Burkholderia mallei
           JHU]
 gi|254262389|ref|ZP_04953254.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 1710a]
 gi|254301371|ref|ZP_04968815.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 406e]
 gi|254359170|ref|ZP_04975442.1| type III secretion inner membrane protein SctR [Burkholderia mallei
           2002721280]
 gi|52213054|emb|CAH39092.1| putative type III secretion protein [Burkholderia pseudomallei
           K96243]
 gi|52422403|gb|AAU45973.1| type III secretion inner membrane protein SctR [Burkholderia mallei
           ATCC 23344]
 gi|76584098|gb|ABA53572.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 1710b]
 gi|126230851|gb|ABN94264.1| type III secretion inner membrane protein SctR [Burkholderia
           pseudomallei 1106a]
 gi|126240688|gb|ABO03800.1| type III secretion inner membrane protein SctR [Burkholderia mallei
           NCTC 10247]
 gi|134246644|gb|EBA46732.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 305]
 gi|147748696|gb|EDK55771.1| type III secretion inner membrane protein SctR [Burkholderia mallei
           FMH]
 gi|147754635|gb|EDK61699.1| type III secretion inner membrane protein SctR [Burkholderia mallei
           JHU]
 gi|148028357|gb|EDK86317.1| type III secretion inner membrane protein SctR [Burkholderia mallei
           2002721280]
 gi|157811552|gb|EDO88722.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 406e]
 gi|157934632|gb|EDO90302.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|160697266|gb|EDP87236.1| type III secretion inner membrane protein SctR [Burkholderia mallei
           ATCC 10399]
 gi|169651256|gb|EDS83949.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei S13]
 gi|184215673|gb|EDU12654.1| type III secretion inner membrane protein SctR [Burkholderia
           pseudomallei 1655]
 gi|238519668|gb|EEP83137.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia mallei GB8 horse 4]
 gi|242135047|gb|EES21450.1| type III secretion inner membrane protein SctR [Burkholderia
           pseudomallei 1106b]
 gi|243060178|gb|EES42364.1| type III secretion inner membrane protein SctR [Burkholderia mallei
           PRL-20]
 gi|254213391|gb|EET02776.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 1710a]
 gi|261826319|gb|ABM99126.2| type III secretion inner membrane protein SctR [Burkholderia mallei
           NCTC 10229]
          Length = 216

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 121/200 (60%), Gaps = 2/200 (1%)

Query: 48  ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107
           ++S+ P + ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ ++ Y+M+P    + 
Sbjct: 16  VMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAPIGFAAQ 75

Query: 108 EMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165
           +      ++ Q T+    A     EPF  F+  ++RE++   F+  A          +  
Sbjct: 76  QQLQGQALSPQPTQAMLQAFGAAKEPFRRFLAAHSREREKRFFLRSASVIWPQAAAAQLR 135

Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225
             +  +L P+F ++++  +F IGF++ + F+I+D+++A ++M+MGM  + PT++++PFK+
Sbjct: 136 EDDLIVLAPAFTLAQMTDAFRIGFILYIAFIIVDLVIANVLMSMGMNQVQPTNVAIPFKL 195

Query: 226 IFFVLIDGWSLLVENLVKSF 245
           + FV++DGWS LV  LV ++
Sbjct: 196 MLFVVMDGWSTLVHGLVLTY 215


>gi|115360604|ref|YP_777741.1| type III secretion system protein [Burkholderia ambifaria AMMD]
 gi|170698360|ref|ZP_02889434.1| Yop virulence translocation R [Burkholderia ambifaria IOP40-10]
 gi|254253710|ref|ZP_04947027.1| Type III secretory pathway component EscR [Burkholderia dolosa
           AUO158]
 gi|115285932|gb|ABI91407.1| Yop virulence translocation R [Burkholderia ambifaria AMMD]
 gi|124898355|gb|EAY70198.1| Type III secretory pathway component EscR [Burkholderia dolosa
           AUO158]
 gi|170136699|gb|EDT04953.1| Yop virulence translocation R [Burkholderia ambifaria IOP40-10]
          Length = 218

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 122/204 (59%), Gaps = 10/204 (4%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108
           +S+ P + ++ T + + ++V  +LR  +G+  VPPN+V+  +A+ ++ YVM+P   ++++
Sbjct: 17  ISLIPFVAMVATSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAVLVSAYVMAPIGMQAMQ 76

Query: 109 ----MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH---SSHRNTDI 161
               M   P  +  +    A     EPF  F++ +  E++   F+  A           I
Sbjct: 77  TMQTMHRTPGSDTSLVVLDAFDAAKEPFRAFLKKHAHEREKRFFVRSATVVWPKDMAAKI 136

Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
            ++D I   +L P+F ++E+  +F+IGFL+ + F+++D+++A ++MAMG+  + PT++++
Sbjct: 137 REDDLI---VLAPAFTLTEMADAFKIGFLLYIAFIVVDLVIANVLMAMGLNQVQPTNVAI 193

Query: 222 PFKVIFFVLIDGWSLLVENLVKSF 245
           PFK++ FV++ GWS L+  LV ++
Sbjct: 194 PFKLLLFVVMSGWSTLIHGLVMTY 217


>gi|329943276|ref|ZP_08292050.1| hypothetical protein G5Q_0966 [Chlamydophila psittaci Cal10]
 gi|332287854|ref|YP_004422755.1| secretion and cellular translocation protein R [Chlamydophila
           psittaci 6BC]
 gi|84785894|gb|ABC62086.1| secretion and cellular translocation protein R [Chlamydophila
           psittaci]
 gi|313848426|emb|CBY17430.1| putative type III export protein [Chlamydophila psittaci RD1]
 gi|325506962|gb|ADZ18600.1| secretion and cellular translocation protein R [Chlamydophila
           psittaci 6BC]
 gi|328814823|gb|EGF84813.1| hypothetical protein G5Q_0966 [Chlamydophila psittaci Cal10]
 gi|328915116|gb|AEB55949.1| type III secretion inner membrane protein SctR [Chlamydophila
           psittaci 6BC]
          Length = 305

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/215 (33%), Positives = 126/215 (58%), Gaps = 17/215 (7%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-- 102
           I   L+++P L++++T + + II   +LR  +G+   PP+ V+  +AL ++ YVM PT  
Sbjct: 93  ILIFLALSPFLMMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGV 152

Query: 103 -----LDRSIEMGIQP--LMNNQITETT--AIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
                  + I+    P  L + +  ET   A+ +  EP   F+  NT +  +  F  ++ 
Sbjct: 153 AMYNDARKEIQGNAIPRDLFSAEGAETVFVALNKSKEPLRSFLIRNTPKSQIQSFYKISQ 212

Query: 154 SS---HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
            +        +T +D +   I+IP+F++ +++ +FEIG LI LPF +ID++ A +++AM 
Sbjct: 213 KTFPPEIREHMTASDFV---IVIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQ 269

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMML P SISLP K++  V++DGW+LL++ L+ SF
Sbjct: 270 MMMLSPLSISLPLKLLLVVMVDGWTLLLQGLMISF 304


>gi|167584013|ref|ZP_02376401.1| type III secretion system protein [Burkholderia ubonensis Bu]
          Length = 216

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 121/200 (60%), Gaps = 2/200 (1%)

Query: 48  ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107
           ++S+ P + ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ ++ Y+M+P    + 
Sbjct: 16  VMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAPIGFAAQ 75

Query: 108 EMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165
           +      ++ Q T+    A     EPF  F+  ++RE++   F+  A          +  
Sbjct: 76  QQLQGQALSPQPTQAMLQAFGAAKEPFRQFLAAHSREREKRFFLRSASVIWPKAAAAQLR 135

Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225
             +  +L P+F ++++  +F IGF++ + F+I+D+++A ++M+MGM  + PT++++PFK+
Sbjct: 136 DDDLIVLAPAFTLAQMTDAFRIGFILYIAFIIVDLVIANVLMSMGMNQVQPTNVAIPFKL 195

Query: 226 IFFVLIDGWSLLVENLVKSF 245
           + FV++DGWS LV  LV ++
Sbjct: 196 MLFVVMDGWSTLVHGLVLTY 215


>gi|118592626|ref|ZP_01550016.1| Type III secretory pathway, component EscR [Stappia aggregata IAM
           12614]
 gi|118434677|gb|EAV41328.1| Type III secretory pathway, component EscR [Stappia aggregata IAM
           12614]
          Length = 212

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 67/197 (34%), Positives = 116/197 (58%), Gaps = 4/197 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P + ++ T F +  +V  ++R  +G+  +PPN+ + +LA+ ++ Y+M+P   ++  +  +
Sbjct: 17  PFMAVVATSFIKIAVVLLLVRNALGVQQIPPNMALNALAIILSGYIMAPVFFQTFMIVQE 76

Query: 113 PLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK-NDHIEY 169
              N  N      A      P   F+  +   ++  LF   A +     D+    D    
Sbjct: 77  GNFNFGNLEGLQEAYNASKGPLIEFLDKHAEGRE-KLFFLKATAELWPADLAAMADENSI 135

Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
            +++P+F IS+LR +FEIGFL+ LPF+ ID++V+ I++AMGMMM+ P +ISLPFK+  FV
Sbjct: 136 FVILPAFTISQLREAFEIGFLLYLPFVAIDLVVSNILLAMGMMMVSPLTISLPFKLFLFV 195

Query: 230 LIDGWSLLVENLVKSFI 246
           ++DGWS L+  LVK++I
Sbjct: 196 MVDGWSRLILGLVKTYI 212


>gi|62185507|ref|YP_220292.1| type III secretion system protein [Chlamydophila abortus S26/3]
 gi|62148574|emb|CAH64346.1| putative type III export protein [Chlamydophila abortus S26/3]
          Length = 305

 Score =  122 bits (306), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 72/215 (33%), Positives = 126/215 (58%), Gaps = 17/215 (7%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-- 102
           I   L+++P L++++T + + II   +LR  +G+   PP+ V+  +AL ++ YVM PT  
Sbjct: 93  ILIFLALSPFLMMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGV 152

Query: 103 -----LDRSIEMGIQP--LMNNQITETT--AIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
                  + I+    P  L + +  ET   A+ +  EP   F+  NT +  +  F  ++ 
Sbjct: 153 AMYNDARKEIQGNAIPRDLFSAEGAETVFVALNKSKEPLRSFLIRNTPKSQIQSFYKISQ 212

Query: 154 SS---HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
            +        +T +D +   I+IP+F++ +++ +FEIG LI LPF +ID++ A +++AM 
Sbjct: 213 KTFPPEIREHMTASDFV---IVIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQ 269

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMML P SISLP K++  V++DGW+LL++ L+ SF
Sbjct: 270 MMMLSPLSISLPLKLLLVVMVDGWTLLLQGLMISF 304


>gi|126444918|ref|YP_001063272.1| type III secretion system protein [Burkholderia pseudomallei 668]
 gi|167743328|ref|ZP_02416102.1| type III secretion system protein [Burkholderia pseudomallei 14]
 gi|167898938|ref|ZP_02486339.1| type III secretion system protein [Burkholderia pseudomallei 7894]
 gi|167923471|ref|ZP_02510562.1| type III secretion system protein [Burkholderia pseudomallei
           BCC215]
 gi|217422186|ref|ZP_03453689.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 576]
 gi|237510472|ref|ZP_04523187.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei MSHR346]
 gi|126224409|gb|ABN87914.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 668]
 gi|217394417|gb|EEC34436.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 576]
 gi|235002677|gb|EEP52101.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei MSHR346]
          Length = 216

 Score =  122 bits (306), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 121/200 (60%), Gaps = 2/200 (1%)

Query: 48  ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107
           ++S+ P + ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ ++ Y+M+P    + 
Sbjct: 16  VMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAPIGFAAQ 75

Query: 108 EMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165
           +      ++ Q T+    A     EPF  F+  ++RE++   F+  A          +  
Sbjct: 76  QQLQGQALSPQPTQAMLQAFGAAKEPFRRFLAAHSREREKRFFLRSASVIWPQAAAAQLR 135

Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225
             +  +L P+F ++++  +F IGF++ + F+I+D+++A ++M+MGM  + PT++++PFK+
Sbjct: 136 DDDLIVLAPAFTLAQMTDAFRIGFILYIAFIIVDLVIANVLMSMGMNQVQPTNVAIPFKL 195

Query: 226 IFFVLIDGWSLLVENLVKSF 245
           + FV++DGWS LV  LV ++
Sbjct: 196 MLFVVMDGWSTLVHGLVLTY 215


>gi|229588261|ref|YP_002870380.1| type III secretion system protein [Pseudomonas fluorescens SBW25]
 gi|229360127|emb|CAY46984.1| putative hairpin type III secretion protein [Pseudomonas
           fluorescens SBW25]
          Length = 217

 Score =  122 bits (306), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 71/204 (34%), Positives = 124/204 (60%), Gaps = 10/204 (4%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT---LDR 105
           LS+ P+LL++ T F + +IV  I R  +G+  VPP++ I  +AL  T ++M+P    +  
Sbjct: 18  LSLMPMLLVVCTAFLKIVIVLMITRNAIGVQQVPPSMAINGIALATTLFIMAPVGYEIAE 77

Query: 106 SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDIT 162
           S++     L N Q    TA + + +P   FM  N     L+  ++       +    ++ 
Sbjct: 78  SVKALPLDLSNVQTLLQTANEAI-KPLRAFMLRNIDPDVLTHLLENTARLWPAQMAQEVQ 136

Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
           + D I   +LIP+F++S+L+  FEIGFLI +PF++ID+IV+ +++A+GM M+ P +ISLP
Sbjct: 137 REDLI---LLIPAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTISLP 193

Query: 223 FKVIFFVLIDGWSLLVENLVKSFI 246
            K++ FV++ GWS L+++L  S++
Sbjct: 194 LKLLLFVMVSGWSRLLDSLFLSYL 217


>gi|17549081|ref|NP_522421.1| type III secretion system protein [Ralstonia solanacearum GMI1000]
 gi|2494568|sp|Q52488|HRCR_RALSO RecName: Full=Hypersensitivity response secretion protein hrcR
 gi|6066701|emb|CAB58247.1| HrpT protein [Ralstonia solanacearum]
 gi|17431332|emb|CAD18011.1| hrp conserved hrcr transmembrane protein [Ralstonia solanacearum
           GMI1000]
 gi|219566950|dbj|BAH04981.1| Hrp conserved transmembrane protein [Ralstonia solanacearum]
 gi|1097280|prf||2113360F hrpT gene
          Length = 217

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 123/204 (60%), Gaps = 10/204 (4%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108
           +++ P   ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ ++ +VM+P    +++
Sbjct: 16  IALLPFAAMVVTSYTKIVVVLGLLRNALGVQQVPPNMVLNGIAMIVSCFVMAPVGMEAMQ 75

Query: 109 MG---IQPLMNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDI 161
                I       IT+   +   A +PF  F+  +T  ++ + FM  A       +   +
Sbjct: 76  RAHVQINAQGGTNITQVMPLLDAARDPFREFLNKHTNAREKAFFMRSAQQLWPPAKAAQL 135

Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
             +D I   +L P+F ++EL  +F IGFL+ L F++ID+++A ++MA+G+  + P+++++
Sbjct: 136 KDDDLI---VLAPAFTLTELTSAFRIGFLLYLAFIVIDLVIANLLMALGLSQVTPSNVAI 192

Query: 222 PFKVIFFVLIDGWSLLVENLVKSF 245
           PFK++ FV++DGWS+L+  LV ++
Sbjct: 193 PFKLLLFVVMDGWSVLIHGLVNTY 216


>gi|304414276|ref|ZP_07395644.1| type III secretion system protein [Candidatus Regiella insecticola
           LSR1]
 gi|304283490|gb|EFL91886.1| type III secretion system protein [Candidatus Regiella insecticola
           LSR1]
          Length = 216

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 70/202 (34%), Positives = 116/202 (57%), Gaps = 22/202 (10%)

Query: 56  LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT----LDRSIEMGI 111
           ++M T F +  +VFS+LR  +G+  VPPN+ I   AL +T ++M+P      DR      
Sbjct: 24  MVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGFALVLTLFIMAPVGFDVYDR------ 77

Query: 112 QPLMNNQITETTA--IQRVAE----PFWVFMRNNTREKDLSLFMDMAHSS--HRNTDITK 163
             L    + +     +Q + E    P+  F+  NT  +  + F ++       +  D  K
Sbjct: 78  --LQGEALPDDIGAFMQHIDEKALVPYRAFLVRNTSVEQTNFFAEIIKKDWPEKYRDKIK 135

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
            D +   I++P+F +S+L  +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPF
Sbjct: 136 PDSL--LIMMPAFTVSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMVSPMTISLPF 193

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K++ F+++ GW LL+  LV S+
Sbjct: 194 KLLIFIMVGGWHLLLGQLVGSY 215


>gi|203284196|ref|YP_002221936.1| flagellar biosynthesis protein [Borrelia duttonii Ly]
 gi|203287735|ref|YP_002222750.1| flagellar biosynthesis protein [Borrelia recurrentis A1]
 gi|201083639|gb|ACH93230.1| flagellar biosynthesis protein [Borrelia duttonii Ly]
 gi|201084955|gb|ACH94529.1| flagellar biosynthesis protein [Borrelia recurrentis A1]
          Length = 254

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 80/198 (40%), Positives = 122/198 (61%), Gaps = 9/198 (4%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P  L+++T F R  IV   +R  + +   PPN VI+ LALF+T + M PT +   +    
Sbjct: 62  PAFLVLMTSFLRIAIVLDFIRRALSLQQSPPNQVIMGLALFLTLFTMWPTFNIIYKDAYL 121

Query: 113 PLMNNQITETTAIQRVAEPFWVFMR---NNTREKDLSLFMDMAHSSHRNTDITKN-DHIE 168
           PL +++I       R   P   FM    +N+R +++ LFM ++  +       KN   + 
Sbjct: 122 PLRDSKINFNEFYDRGIAPLRNFMYKQMSNSRHEEIRLFMSISDYAK-----PKNFSEVP 176

Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
             +LI SF++ EL+ +F++G LI LPF+IID+IVA ++MAMGM+MLPP  ISLPFK+I F
Sbjct: 177 THVLIASFILHELKVAFKMGILIFLPFIIIDIIVAAVLMAMGMIMLPPVIISLPFKLILF 236

Query: 229 VLIDGWSLLVENLVKSFI 246
           V++DGW+L+   L+KSF+
Sbjct: 237 VMVDGWTLITSGLIKSFM 254


>gi|149926086|ref|ZP_01914349.1| Yop virulence translocation protein R [Limnobacter sp. MED105]
 gi|149825374|gb|EDM84585.1| Yop virulence translocation protein R [Limnobacter sp. MED105]
          Length = 217

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 115/202 (56%), Gaps = 6/202 (2%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108
           LS+ P++ +  T F +   V  ILR  +G+  VP N+V+  +++ MT  VM   L  + +
Sbjct: 17  LSVLPLVAVTATSFLKISAVLLILRNAIGVQQVPSNMVLYGISMVMTLLVMGSILTEAGQ 76

Query: 109 M----GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
                G  P+   ++ E+  I     PF  FM  N     L+ F + A    +  D  + 
Sbjct: 77  RFAPDGKMPVSGTEVLES--INASVPPFKKFMLANVNPGYLNSFHETAQKFQKKYDAPEV 134

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           +  +  +++P+F+ SEL  +F IG  + LPF+IID+ V++ +MA+GMMM+ P S+++P K
Sbjct: 135 EKTDLFVVLPAFVASELAEAFRIGLYLYLPFVIIDLAVSSALMALGMMMVSPMSLTVPAK 194

Query: 225 VIFFVLIDGWSLLVENLVKSFI 246
           ++ FV ++GW+ +++ LV S++
Sbjct: 195 IVLFVAVEGWAKVLQGLVNSYL 216


>gi|120609152|ref|YP_968830.1| type III secretion system protein [Acidovorax citrulli AAC00-1]
 gi|120587616|gb|ABM31056.1| Yop virulence translocation R [Acidovorax citrulli AAC00-1]
 gi|251825694|gb|ACT20915.1| type III secretion system structural protein [Acidovorax citrulli]
 gi|255047057|gb|AAW81014.2| HrcR [Acidovorax citrulli]
          Length = 220

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 119/200 (59%), Gaps = 10/200 (5%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP-TLDRSIEMGI 111
           P   ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ ++ YVM+P  ++ S  M +
Sbjct: 23  PFAAMIVTSYTKVVVVLGLLRNALGVQQVPPNMVLNGIAIIISVYVMAPVAMEASDRMQM 82

Query: 112 QP---LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKND 165
            P     +N      A     EPF  F+  +    + + F+  A +     R   +  +D
Sbjct: 83  LPPSAQSSNTQQMLAAASAAREPFRKFLDKHADAAEKAFFLKSAQALWPEERARSLQADD 142

Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225
            +   +L P+F+++EL  +F IGFL+ L F+I+++++A +++AMG+  + PT++++PFK+
Sbjct: 143 LV---VLAPAFLLTELTAAFRIGFLLYLAFIIVELVIANVLLAMGLSQVSPTNVAIPFKL 199

Query: 226 IFFVLIDGWSLLVENLVKSF 245
           + FV++DGWS ++  LV ++
Sbjct: 200 LLFVVLDGWSQVMHGLVMTY 219


>gi|326315333|ref|YP_004233005.1| Yop virulence translocation R [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|89111159|dbj|BAE80249.1| HrcR [Acidovorax avenae subsp. avenae]
 gi|89111192|dbj|BAE80281.1| HrcR [Acidovorax avenae subsp. avenae]
 gi|323372169|gb|ADX44438.1| Yop virulence translocation R [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 220

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 119/200 (59%), Gaps = 10/200 (5%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP-TLDRSIEMGI 111
           P   ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ ++ YVM+P  ++ S  M +
Sbjct: 23  PFAAMIVTSYTKVVVVLGLLRNALGVQQVPPNMVLNGIAIIISVYVMAPVAMEASDRMQM 82

Query: 112 QP---LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKND 165
            P     +N      A     EPF  F+  +    + + F+  A +     R   +  +D
Sbjct: 83  LPPSAQSSNTQQMLAAASAAREPFRKFLDKHADAAEKAFFLKSAQALWPEDRARSLQADD 142

Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225
            +   +L P+F+++EL  +F IGFL+ L F+I+++++A +++AMG+  + PT++++PFK+
Sbjct: 143 LV---VLAPAFLLTELTAAFRIGFLLYLAFIIVELVIANVLLAMGLSQVSPTNVAIPFKL 199

Query: 226 IFFVLIDGWSLLVENLVKSF 245
           + FV++DGWS ++  LV ++
Sbjct: 200 LLFVVLDGWSQVMHGLVMTY 219


>gi|89897883|ref|YP_514993.1| type III secretion system protein [Chlamydophila felis Fe/C-56]
 gi|89331255|dbj|BAE80848.1| type III secretion flagellar biosynthesis inner membrane protein
           [Chlamydophila felis Fe/C-56]
          Length = 305

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/215 (33%), Positives = 126/215 (58%), Gaps = 17/215 (7%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-- 102
           I   L+++P L++++T + + II   +LR  +G+   PP+ V+  +AL ++ YVM PT  
Sbjct: 93  ILIFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGV 152

Query: 103 -----LDRSIEMGIQP--LMNNQITETT--AIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
                  + I+    P  L + +  ET   A+ +  EP   F+  NT +  +  F  ++ 
Sbjct: 153 AMYNDARKEIQGNAIPRDLFSAEGAETVFVALNKSKEPLRSFLIRNTPKSQIQSFYKISQ 212

Query: 154 SS---HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
            +        +T +D +   I++P+F++ +++ +FEIG LI LPF +ID++ A +++AM 
Sbjct: 213 KTFPPEIREHLTVSDFV---IIVPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQ 269

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMML P SISLP K++  V++DGW+LL++ L+ SF
Sbjct: 270 MMMLSPLSISLPLKLLLVVMVDGWTLLLQGLMISF 304


>gi|300693806|ref|YP_003749779.1| hypersensitivity response secretion protein hrcr, type III
           secretion system [Ralstonia solanacearum PSI07]
 gi|299075843|emb|CBJ35152.1| Hypersensitivity response secretion protein hrcR, type III
           secretion system [Ralstonia solanacearum PSI07]
          Length = 217

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 123/203 (60%), Gaps = 8/203 (3%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108
           +++ P   ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ ++ ++M+P    +++
Sbjct: 16  IALLPFAAMVVTSYTKIVVVLGLLRNALGVQQVPPNMVLNGIAMIVSCFIMAPVGMEAMQ 75

Query: 109 MG---IQPLMNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHS--SHRNTDIT 162
                I       IT+   +   A +PF  F+  +T  ++ + FM  A          + 
Sbjct: 76  RAHVQINAQGGTNITQVMPLLDAARDPFREFLNKHTNAREKAFFMRSAQQLWPPAKAALL 135

Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
           K+D  +  +L P+F ++EL  +F IGFL+ L F++ID+++A ++MA+G+  + P+++++P
Sbjct: 136 KDD--DLIVLAPAFTLTELTSAFRIGFLLYLAFIVIDLVIANLLMALGLSQVTPSNVAIP 193

Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245
           FK++ FV++DGWS+LV  LV ++
Sbjct: 194 FKLLLFVVMDGWSVLVHGLVNTY 216


>gi|207724580|ref|YP_002254977.1| hrp protein hrcr [Ralstonia solanacearum MolK2]
 gi|207739216|ref|YP_002257609.1| hrp protein hrcr [Ralstonia solanacearum IPO1609]
 gi|206589802|emb|CAQ36763.1| hrp conserved protein hrcr [Ralstonia solanacearum MolK2]
 gi|206592589|emb|CAQ59495.1| hrp conserved protein hrcr [Ralstonia solanacearum IPO1609]
          Length = 217

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 128/206 (62%), Gaps = 14/206 (6%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP----TLD 104
           +++ P   ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ ++ ++M+P     + 
Sbjct: 16  IALLPFAAMVVTSYTKIVVVLGLLRNALGVQQVPPNMVLNGIAMIVSCFIMAPVGMEAMQ 75

Query: 105 RS-IEMGIQPLMNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHS---SHRNT 159
           R+ +++  Q   N  IT+   +   A +PF  F+  +T  ++ + FM  A       +  
Sbjct: 76  RAHVQLNAQGGAN--ITQVMPLLDAARDPFREFLNKHTNAREKAFFMRSAQQLWPPAKAA 133

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            + ++D I   +L P+F ++EL  +F IGFL+ L F++ID+++A ++MA+G+  + P+++
Sbjct: 134 LLKEDDLI---VLAPAFTLTELTSAFRIGFLLYLAFIVIDLVIANLLMALGLSQVTPSNV 190

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++PFK++ FV++DGWS+LV  LV ++
Sbjct: 191 AIPFKLLLFVVMDGWSVLVHGLVNTY 216


>gi|285018283|ref|YP_003375994.1| xanthomonas secretion apparatus protein [Xanthomonas albilineans
           GPE PC73]
 gi|283473501|emb|CBA16004.1| probable xanthomonas secretion apparatus protein [Xanthomonas
           albilineans]
          Length = 231

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 126/219 (57%), Gaps = 20/219 (9%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            +  ++++ P L    TCF +F +VF +LR  +GM  VP N+V+ S+AL +  +VM P +
Sbjct: 11  ALIAVMALIPFLFASGTCFLKFSVVFVLLRNAIGMQQVPSNMVLNSIALMLAAFVMQPVI 70

Query: 104 DRSIEMGIQPLMNNQITETTAI----QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
             +     +    +Q+T    +      V  P+  ++     +K+L  F     S+ +NT
Sbjct: 71  TSTFHAFQE---TDQVTSMDEVGPYLTTVLTPYRQYLAKYA-DKELVEFFQRVPSTVQNT 126

Query: 160 DIT-----KNDHIEYRI-------LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
             T      N    +++       L+P++ ++ELR +F IGF + LPF++ID+IV+ +++
Sbjct: 127 PTTPGQGTANQSAIHQVQQPSLYALLPAYGLTELRDAFRIGFYLYLPFVVIDLIVSNVLL 186

Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           A+GMMM+ P +IS+P K+I FV +DGW+L+ ++L++ ++
Sbjct: 187 ALGMMMMSPVTISMPIKLILFVALDGWTLVSKDLMEPYM 225


>gi|191166033|ref|ZP_03027869.1| type III secretion apparatus protein EpaP [Escherichia coli B7A]
 gi|190903981|gb|EDV63694.1| type III secretion apparatus protein EpaP [Escherichia coli B7A]
          Length = 221

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 124/214 (57%), Gaps = 20/214 (9%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            I ++ ++ P ++   TCF +F IVF I+R  +G+  VP N+ +  +AL ++ +VM P  
Sbjct: 9   AILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMP-- 66

Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAE----------PFWVFMRNNTREKDLSLF--MDM 151
                +G + + NN   E  +   VA            +  ++  ++  + +S F  +  
Sbjct: 67  -----VG-KEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKHSEPELVSFFEKIQK 120

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
            +SS  N +I  +D+I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GM
Sbjct: 121 VNSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGM 180

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MM+ P +IS P K+I FV +DGW++L + L+  +
Sbjct: 181 MMMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214


>gi|167567196|ref|ZP_02360112.1| flagellar biosynthesis protein FliP [Burkholderia oklahomensis
           EO147]
 gi|167574620|ref|ZP_02367494.1| flagellar biosynthesis protein FliP [Burkholderia oklahomensis
           C6786]
          Length = 249

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/220 (36%), Positives = 126/220 (57%), Gaps = 7/220 (3%)

Query: 25  DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
           + + +P+D S+ T I+      T+L + P+L I+ T F RF+IV ++LR  +G+    P 
Sbjct: 33  ESLGLPSDYSVKTQILLFM---TLLGLLPMLAIVTTSFLRFVIVLALLRQALGLQQGLPT 89

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
            V+  +AL +T  VM P         I+P   ++IT   A+ R   P   FM   T +  
Sbjct: 90  RVVAGVALLLTLLVMRPVGLDVWRNAIEPYDLDKITFREAVDRAQLPLSRFMLAQTNKAS 149

Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
           L     +A       D+ + +   + +   +FM+SEL+ +F+IG ++ LPFLIID++VA+
Sbjct: 150 LEQIARLAG----EKDLARPEDHAFVVKAAAFMLSELKTAFQIGSMLFLPFLIIDLVVAS 205

Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
            +MAMGMMML P  ISLP K++ FVL+DGW+L V+ L  S
Sbjct: 206 TLMAMGMMMLSPLVISLPLKLLLFVLVDGWTLTVDTLATS 245


>gi|83747860|ref|ZP_00944893.1| HrcR [Ralstonia solanacearum UW551]
 gi|83725507|gb|EAP72652.1| HrcR [Ralstonia solanacearum UW551]
          Length = 252

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 128/206 (62%), Gaps = 14/206 (6%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP----TLD 104
           +++ P   ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ ++ ++M+P     + 
Sbjct: 51  IALLPFAAMVVTSYTKIVVVLGLLRNALGVQQVPPNMVLNGIAMIVSCFIMAPVGMEAMQ 110

Query: 105 RS-IEMGIQPLMNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHS---SHRNT 159
           R+ +++  Q   N  IT+   +   A +PF  F+  +T  ++ + FM  A       +  
Sbjct: 111 RAHVQLNAQGGAN--ITQVMPLLDAARDPFREFLNKHTNAREKAFFMRSAQQLWPPAKAA 168

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            + ++D I   +L P+F ++EL  +F IGFL+ L F++ID+++A ++MA+G+  + P+++
Sbjct: 169 LLKEDDLI---VLAPAFTLTELTSAFRIGFLLYLAFIVIDLVIANLLMALGLSQVTPSNV 225

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++PFK++ FV++DGWS+LV  LV ++
Sbjct: 226 AIPFKLLLFVVMDGWSVLVHGLVNTY 251


>gi|182440971|dbj|BAG24096.1| HrcR [Pseudomonas cichorii]
          Length = 193

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 122/202 (60%), Gaps = 20/202 (9%)

Query: 56  LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMG----- 110
           +I+ T F +  +V  I R  +G+   PPN+ +  +AL  T ++M+P  +   EMG     
Sbjct: 1   MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFN---EMGQRVKK 57

Query: 111 IQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR------NTDITKN 164
           +   ++N     +A + V EP  +FM   TR  D  +   +  ++ R      ++  +++
Sbjct: 58  LPERLDNFAAMESAGKHVIEPLRLFM---TRNIDPDIQTHLLENTQRMWPKEMSSQASRD 114

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           D +   +++P+F++SEL+  F+IGFLI +PF++ID+IV+ I++A+GM M+ P +ISLP K
Sbjct: 115 DLL---LVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLK 171

Query: 225 VIFFVLIDGWSLLVENLVKSFI 246
           ++ FVL+DGW+ L++ L  S++
Sbjct: 172 ILLFVLVDGWTRLLDGLFYSYM 193


>gi|85060062|ref|YP_455764.1| surface presentation of antigens protein SpaP [Sodalis glossinidius
           str. 'morsitans']
 gi|45504775|gb|AAS66865.1| SpaP [Sodalis glossinidius]
 gi|84780582|dbj|BAE75359.1| type III secretion apparatus SpaP [Sodalis glossinidius str.
           'morsitans']
          Length = 233

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 129/224 (57%), Gaps = 12/224 (5%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
           +++P D+ +        GI  + ++ P ++   TC+ +F IVF ++R  +G+  VP NL 
Sbjct: 5   LDLPNDMGL-------IGILALATLLPFIIASGTCYIKFSIVFVMVRNALGLQQVPSNLT 57

Query: 87  IISLALFMTFYVMSP-TLDRSIEMGIQPL-MNNQITETTAIQRVAEPFWVFMRNNTREKD 144
           +  +AL +  ++M P   D       QP+ + +  +    ++   E +  +++     + 
Sbjct: 58  LNGIALMLAMFIMGPIAGDAYNAYQEQPVALGSAASVLEFLENSMESYRHYLQKYADPR- 116

Query: 145 LSLFMDMAHSSHRNT-DITKNDHIEYRI-LIPSFMISELRRSFEIGFLIILPFLIIDMIV 202
           L+ F D AH       D   + H    + L+P++ +SE++ SF IGF + LPF+++D+++
Sbjct: 117 LTEFFDRAHGGGGAAHDAPASGHAPSMLALLPAYALSEIKDSFRIGFYLYLPFVVVDLLI 176

Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +++++A+GMMM+ P ++S+P K++ FV++DGW+LL + LV  ++
Sbjct: 177 SSVLLALGMMMMSPITLSVPIKLVLFVMLDGWTLLSQGLVLQYL 220


>gi|237800781|ref|ZP_04589242.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331023639|gb|EGI03696.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 218

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 116/208 (55%), Gaps = 12/208 (5%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           +   + + P+ ++ +T F +  +V  ++R  +G+   PPNLV+  +AL ++ YV +P + 
Sbjct: 14  VVATIGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIALILSVYVTTPLIG 73

Query: 105 ---RSIEMGIQPLMN-NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH---SSHR 157
              R +E     L N  Q+ E  +  R   P    +     E +   F+       S   
Sbjct: 74  DMYRQVEGRDLSLQNVQQLEELGSALR--PPLQAHLSKFANESERGFFVQATETIWSPEA 131

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
             D+  +D +   +LIP+F+ SEL R+FEIGFL+ +PFL++D++V+ ++MAMGM M+ PT
Sbjct: 132 RADLRDDDLV---VLIPAFVSSELTRAFEIGFLLYIPFLVVDLLVSNVLMAMGMSMVSPT 188

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
            IS+P K+  FV + GWS L+  L+ S+
Sbjct: 189 LISIPLKIFLFVALSGWSRLMHGLILSY 216


>gi|299069226|emb|CBJ40486.1| Hypersensitivity response secretion protein hrcR, type III
           secretion system [Ralstonia solanacearum CMR15]
          Length = 217

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 121/204 (59%), Gaps = 10/204 (4%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108
           +++ P   ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ ++ +VM+P    +++
Sbjct: 16  IALLPFAAMVVTSYTKIVVVLGLLRNALGVQQVPPNMVLNGIAMIVSCFVMAPVGMEAMQ 75

Query: 109 MGIQPLMNNQITETTAI----QRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDI 161
                L     T  T +        +PF  F+  +T  ++ + FM  A       +   +
Sbjct: 76  RAHVQLNAQGGTTITQVMPLLDAARDPFREFLNKHTNPREKAFFMRSAQQLWPPAKAAQL 135

Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
             +D I   +L P+F ++EL  +F IGFL+ L F++ID+++A ++MA+G+  + P+++++
Sbjct: 136 KDDDLI---VLAPAFTLTELTSAFRIGFLLYLVFIVIDLVIANLLMALGLSQVTPSNVAI 192

Query: 222 PFKVIFFVLIDGWSLLVENLVKSF 245
           PFK++ FV++DGWS+LV  LV ++
Sbjct: 193 PFKLLLFVVMDGWSVLVHGLVNTY 216


>gi|218679632|ref|ZP_03527529.1| flagellar biosynthesis protein FliP [Rhizobium etli CIAT 894]
          Length = 105

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 58/100 (58%), Positives = 77/100 (77%), Gaps = 1/100 (1%)

Query: 1   MIRY-CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           MIR   F A  +V PEL  A+    D++N+P D S++ WI+RTFG+ T+LS+AP +LIMV
Sbjct: 1   MIRLIVFLAAMMVVPELAVAQQLPTDLLNVPVDGSVAAWIIRTFGLLTVLSVAPGILIMV 60

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           T FPRFII FSILR+GMG+ S P N++++SL+LFMTFYVM
Sbjct: 61  TSFPRFIIAFSILRSGMGLSSTPSNMILLSLSLFMTFYVM 100


>gi|193063605|ref|ZP_03044694.1| type III secretion apparatus protein EpaP [Escherichia coli E22]
 gi|193071824|ref|ZP_03052713.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli E110019]
 gi|194426470|ref|ZP_03059025.1| fliP family protein [Escherichia coli B171]
 gi|209920317|ref|YP_002294401.1| surface presentation of antigens protein SpaP [Escherichia coli
           SE11]
 gi|218555411|ref|YP_002388324.1| surface presentation of antigens protein SpaP [Escherichia coli
           IAI1]
 gi|218706362|ref|YP_002413881.1| surface presentation of antigens protein SpaP [Escherichia coli
           UMN026]
 gi|260845525|ref|YP_003223303.1| type III secretion protein EpaP [Escherichia coli O103:H2 str.
           12009]
 gi|260856977|ref|YP_003230868.1| type III secretion protein EpaP [Escherichia coli O26:H11 str.
           11368]
 gi|260869540|ref|YP_003235942.1| type III secretion protein EpaP [Escherichia coli O111:H- str.
           11128]
 gi|293406354|ref|ZP_06650280.1| surface presentation antigens protein SpaP [Escherichia coli
           FVEC1412]
 gi|293412212|ref|ZP_06654935.1| YscR/HrcR family type III secretion apparatus protein [Escherichia
           coli B354]
 gi|293449185|ref|ZP_06663606.1| YscR/HrcR family type III secretion apparatus protein [Escherichia
           coli B088]
 gi|298382089|ref|ZP_06991686.1| spaP protein [Escherichia coli FVEC1302]
 gi|300815709|ref|ZP_07095933.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 107-1]
 gi|300820661|ref|ZP_07100812.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 119-7]
 gi|300898067|ref|ZP_07116435.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 198-1]
 gi|307310520|ref|ZP_07590168.1| Yop virulence translocation R [Escherichia coli W]
 gi|309793922|ref|ZP_07688347.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 145-7]
 gi|331664426|ref|ZP_08365332.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli TA143]
 gi|331678847|ref|ZP_08379521.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli H591]
 gi|14422435|dbj|BAB60842.1| epaP [Escherichia coli]
 gi|62085063|gb|AAX62928.1| putative type III secretion apparatus integral membrane protein
           component [Escherichia coli]
 gi|192930882|gb|EDV83487.1| type III secretion apparatus protein EpaP [Escherichia coli E22]
 gi|192954864|gb|EDV85378.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli E110019]
 gi|194415778|gb|EDX32045.1| fliP family protein [Escherichia coli B171]
 gi|209913576|dbj|BAG78650.1| putative type III secretion protein [Escherichia coli SE11]
 gi|218362179|emb|CAQ99796.1| putative type III secretion system protein EpaP [Escherichia coli
           IAI1]
 gi|218433459|emb|CAR14361.1| putative type III secretion system protein EpaP [Escherichia coli
           UMN026]
 gi|257755626|dbj|BAI27128.1| type III secretion protein EpaP [Escherichia coli O26:H11 str.
           11368]
 gi|257760672|dbj|BAI32169.1| type III secretion protein EpaP [Escherichia coli O103:H2 str.
           12009]
 gi|257765896|dbj|BAI37391.1| type III secretion protein EpaP [Escherichia coli O111:H- str.
           11128]
 gi|291322275|gb|EFE61704.1| YscR/HrcR family type III secretion apparatus protein [Escherichia
           coli B088]
 gi|291426360|gb|EFE99392.1| surface presentation antigens protein SpaP [Escherichia coli
           FVEC1412]
 gi|291468983|gb|EFF11474.1| YscR/HrcR family type III secretion apparatus protein [Escherichia
           coli B354]
 gi|298277229|gb|EFI18745.1| spaP protein [Escherichia coli FVEC1302]
 gi|300358205|gb|EFJ74075.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 198-1]
 gi|300526925|gb|EFK47994.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 119-7]
 gi|300531638|gb|EFK52700.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 107-1]
 gi|306909415|gb|EFN39910.1| Yop virulence translocation R [Escherichia coli W]
 gi|308122329|gb|EFO59591.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 145-7]
 gi|315062167|gb|ADT76494.1| type III secretion system protein [Escherichia coli W]
 gi|323153851|gb|EFZ40087.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli EPECa14]
 gi|323180305|gb|EFZ65857.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli 1180]
 gi|323377249|gb|ADX49517.1| Yop virulence translocation R [Escherichia coli KO11]
 gi|331058357|gb|EGI30338.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli TA143]
 gi|331073677|gb|EGI44998.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli H591]
          Length = 221

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 123/214 (57%), Gaps = 20/214 (9%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            I ++ ++ P ++   TCF +F IVF I+R  +G+  VP N+ +  +AL ++ +VM P  
Sbjct: 9   AILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMP-- 66

Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAE----------PFWVFMRNNTREKDLSLF--MDM 151
                +G + + NN   E  +   VA            +  ++   +  + +S F  +  
Sbjct: 67  -----VG-KEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQK 120

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
            +SS  N +I  +D+I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GM
Sbjct: 121 VNSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGM 180

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MM+ P +IS P K+I FV +DGW++L + L+  +
Sbjct: 181 MMMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214


>gi|300697461|ref|YP_003748122.1| Hypersensitivity response secretion protein hrcR, type III
           secretion system [Ralstonia solanacearum CFBP2957]
 gi|299074185|emb|CBJ53730.1| Hypersensitivity response secretion protein hrcR, type III
           secretion system [Ralstonia solanacearum CFBP2957]
          Length = 217

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 127/206 (61%), Gaps = 14/206 (6%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP----TLD 104
           +++ P   ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ ++ ++M+P     + 
Sbjct: 16  IALLPFAAMVVTSYTKIVVVLGLLRNALGVQQVPPNMVLNGIAMIVSCFIMAPVGMEAMQ 75

Query: 105 RS-IEMGIQPLMNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHS---SHRNT 159
           R+ +++  Q      IT+   +   A +PF  F+  +T  ++ + FM  A       +  
Sbjct: 76  RAHVQLNAQG--GATITQVMPLLDAARDPFREFLNKHTNAREKAFFMRSAQQLWPPAKAA 133

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            + ++D I   +L P+F ++EL  +F IGFL+ L F++ID+++A ++MA+G+  + P+++
Sbjct: 134 LLKEDDLI---VLAPAFTLTELTSAFRIGFLLYLAFIVIDLVIANLLMALGLSQVTPSNV 190

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++PFK++ FV++DGWS+LV  LV ++
Sbjct: 191 AIPFKLLLFVVMDGWSVLVHGLVNTY 216


>gi|157159039|ref|YP_001464197.1| surface presentation of antigens protein SpaP [Escherichia coli
           E24377A]
 gi|157081069|gb|ABV20777.1| type III secretion apparatus protein EpaP [Escherichia coli
           E24377A]
          Length = 221

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 123/214 (57%), Gaps = 20/214 (9%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            I ++ ++ P ++   TCF +F IVF I+R  +G+  VP N+ +  +AL ++ +VM P  
Sbjct: 9   AILSLFTLLPFIIASGTCFIKFSIVFVIVRKALGLQQVPSNMTLNGVALLLSMFVMMP-- 66

Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAE----------PFWVFMRNNTREKDLSLF--MDM 151
                +G + + NN   E  +   VA            +  ++   +  + +S F  +  
Sbjct: 67  -----VG-KEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQK 120

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
            +SS  N +I  +D+I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GM
Sbjct: 121 VNSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGM 180

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MM+ P +IS P K+I FV +DGW++L + L+  +
Sbjct: 181 MMMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214


>gi|298487104|ref|ZP_07005154.1| type III secretion system inner membrane protein [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298158347|gb|EFH99417.1| type III secretion system inner membrane protein [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 218

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 116/208 (55%), Gaps = 12/208 (5%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           +   + + P+ ++ +T F +  +V  ++R  +G+   PPNLV+  +AL ++ YV +P + 
Sbjct: 14  VVATIGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIALILSVYVTTPLIG 73

Query: 105 ---RSIEMGIQPLMN-NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH---SSHR 157
              R ++     L N  Q+ E  +  R   P    +     E +   F+       S   
Sbjct: 74  DMYREVQGRDLSLQNVQQLEELGSALR--PPLQAHLSKFANESERGFFVQATETIWSPEA 131

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
             D+  +D +   +LIP+F+ SEL R+FEIGFL+ +PFL++D++V+ ++MAMGM M+ PT
Sbjct: 132 RADLCDDDLV---VLIPAFVSSELTRAFEIGFLLYIPFLVVDLLVSNVLMAMGMSMVSPT 188

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
            IS+P K+  FV + GWS L+  L+ S+
Sbjct: 189 LISIPLKIFLFVALSGWSRLMHGLILSY 216


>gi|330953282|gb|EGH53542.1| type III secretion system protein YscR [Pseudomonas syringae Cit 7]
          Length = 218

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 116/208 (55%), Gaps = 12/208 (5%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           +   + + P+ ++ +T F +  +V  ++R  +G+   PPNLV+  +AL ++ YV +P + 
Sbjct: 14  VVATIGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIALILSVYVTTPLIG 73

Query: 105 ---RSIEMGIQPLMN-NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH---SSHR 157
              R ++     L N  Q+ E  +  R   P    +     E +   F+       S   
Sbjct: 74  DMYRQVQGRDLSLQNVQQLEELGSALR--PPLQAHLSKFANESERGFFVQATETIWSPEA 131

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
             D+  +D +   +LIP+F+ SEL R+FEIGFL+ +PFL++D++V+ ++MAMGM M+ PT
Sbjct: 132 RADLRDDDLV---VLIPAFVSSELTRAFEIGFLLYIPFLVVDLLVSNVLMAMGMSMVSPT 188

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
            IS+P K+  FV + GWS L+  L+ S+
Sbjct: 189 LISIPLKIFLFVALSGWSRLMHGLILSY 216


>gi|257487956|ref|ZP_05641997.1| type III secretion system protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|289646626|ref|ZP_06477969.1| type III secretion system protein [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|320324517|gb|EFW80594.1| type III secretion system protein [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320328890|gb|EFW84889.1| type III secretion system protein [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330879022|gb|EGH13171.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|331008645|gb|EGH88701.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 218

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 116/208 (55%), Gaps = 12/208 (5%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           +   + + P+ ++ +T F +  +V  ++R  +G+   PPNLV+  +AL ++ YV +P + 
Sbjct: 14  VVATIGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIALILSVYVTTPLIG 73

Query: 105 ---RSIEMGIQPLMN-NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH---SSHR 157
              R ++     L N  Q+ E  +  R   P    +     E +   F+       S   
Sbjct: 74  DMYREVQGRDLSLQNVQQLEELGSALR--PPLQAHLSKFANESERGFFVQATETIWSPEA 131

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
             D+  +D +   +LIP+F+ SEL R+FEIGFL+ +PFL++D++V+ ++MAMGM M+ PT
Sbjct: 132 RADLRDDDLV---VLIPAFVSSELTRAFEIGFLLYIPFLVVDLLVSNVLMAMGMSMVSPT 188

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
            IS+P K+  FV + GWS L+  L+ S+
Sbjct: 189 LISIPLKIFLFVALSGWSRLMHGLILSY 216


>gi|330876194|gb|EGH10343.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330963708|gb|EGH63968.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 218

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 116/208 (55%), Gaps = 12/208 (5%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           +   + + P+ ++ +T F +  +V  ++R  +G+   PPNLV+  +AL ++ YV +P + 
Sbjct: 14  VVATIGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIALILSVYVTTPLIG 73

Query: 105 ---RSIEMGIQPLMN-NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH---SSHR 157
              R ++     L N  Q+ E  +  R   P    +     E +   F+       S   
Sbjct: 74  DMYREVQGRDLSLQNVQQLEELGSALR--PPLQAHLSKFANESERGFFVQATETIWSPEA 131

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
             D+  +D +   +LIP+F+ SEL R+FEIGFL+ +PFL++D++V+ ++MAMGM M+ PT
Sbjct: 132 RADLRDDDLV---VLIPAFVSSELTRAFEIGFLLYIPFLVVDLLVSNVLMAMGMSMVSPT 188

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
            IS+P K+  FV + GWS L+  L+ S+
Sbjct: 189 LISIPLKIFLFVALSGWSRLMHGLILSY 216


>gi|15803389|ref|NP_289422.1| surface presentation of antigens protein SpaP [Escherichia coli
           O157:H7 EDL933]
 gi|15832979|ref|NP_311752.1| surface presentation of antigens protein SpaP [Escherichia coli
           O157:H7 str. Sakai]
 gi|168747669|ref|ZP_02772691.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7
           str. EC4113]
 gi|168753791|ref|ZP_02778798.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7
           str. EC4401]
 gi|168759981|ref|ZP_02784988.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7
           str. EC4501]
 gi|168766846|ref|ZP_02791853.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7
           str. EC4486]
 gi|168775730|ref|ZP_02800737.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7
           str. EC4196]
 gi|168778867|ref|ZP_02803874.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7
           str. EC4076]
 gi|168785699|ref|ZP_02810706.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7
           str. EC869]
 gi|168799986|ref|ZP_02824993.1| fliP family protein [Escherichia coli O157:H7 str. EC508]
 gi|195936471|ref|ZP_03081853.1| surface presentation of antigens protein SpaP [Escherichia coli
           O157:H7 str. EC4024]
 gi|208806889|ref|ZP_03249226.1| fliP family protein [Escherichia coli O157:H7 str. EC4206]
 gi|208812978|ref|ZP_03254307.1| fliP family protein [Escherichia coli O157:H7 str. EC4045]
 gi|208820470|ref|ZP_03260790.1| fliP family protein [Escherichia coli O157:H7 str. EC4042]
 gi|209399259|ref|YP_002272331.1| fliP family protein [Escherichia coli O157:H7 str. EC4115]
 gi|217326775|ref|ZP_03442858.1| fliP family protein [Escherichia coli O157:H7 str. TW14588]
 gi|254794806|ref|YP_003079643.1| surface presentation of antigens protein SpaP [Escherichia coli
           O157:H7 str. TW14359]
 gi|261226166|ref|ZP_05940447.1| putative integral membrane protein-component of typeIII secretion
           apparatus [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256580|ref|ZP_05949113.1| putative integral membrane protein-component of typeIII secretion
           apparatus [Escherichia coli O157:H7 str. FRIK966]
 gi|12517367|gb|AAG57981.1|AE005515_3 putative integral membrane protein-component of typeIII secretion
           apparatus [Escherichia coli O157:H7 str. EDL933]
 gi|13363197|dbj|BAB37148.1| type III secretion protein EpaP [Escherichia coli O157:H7 str.
           Sakai]
 gi|187768768|gb|EDU32612.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7
           str. EC4196]
 gi|188017894|gb|EDU56016.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7
           str. EC4113]
 gi|189003561|gb|EDU72547.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7
           str. EC4076]
 gi|189358717|gb|EDU77136.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7
           str. EC4401]
 gi|189363672|gb|EDU82091.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7
           str. EC4486]
 gi|189369400|gb|EDU87816.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7
           str. EC4501]
 gi|189373795|gb|EDU92211.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7
           str. EC869]
 gi|189377645|gb|EDU96061.1| fliP family protein [Escherichia coli O157:H7 str. EC508]
 gi|208726690|gb|EDZ76291.1| fliP family protein [Escherichia coli O157:H7 str. EC4206]
 gi|208734255|gb|EDZ82942.1| fliP family protein [Escherichia coli O157:H7 str. EC4045]
 gi|208740593|gb|EDZ88275.1| fliP family protein [Escherichia coli O157:H7 str. EC4042]
 gi|209160659|gb|ACI38092.1| fliP family protein [Escherichia coli O157:H7 str. EC4115]
 gi|217319142|gb|EEC27567.1| fliP family protein [Escherichia coli O157:H7 str. TW14588]
 gi|254594206|gb|ACT73567.1| putative integral membrane protein-component of typeIII secretion
           apparatus [Escherichia coli O157:H7 str. TW14359]
          Length = 221

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 122/207 (58%), Gaps = 6/207 (2%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            I ++ ++ P ++   TCF +F IVF I+R  +G+  VP N+ +  +AL ++ +VM P +
Sbjct: 9   AILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMP-V 67

Query: 104 DRSIEMGIQP---LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF--MDMAHSSHRN 158
            + I    Q      NN  +    ++     +  ++   +  + +S F  +   +SS  N
Sbjct: 68  GKEIYYNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQKVNSSEDN 127

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
            +I  +D+I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMMM+ P +
Sbjct: 128 EEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMMMMSPVT 187

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IS P K+I FV +DGW++L + L+  +
Sbjct: 188 ISTPIKLILFVAMDGWTMLSKGLILQY 214


>gi|238755993|ref|ZP_04617318.1| Surface presentation of antigens protein spaP [Yersinia ruckeri
           ATCC 29473]
 gi|238705782|gb|EEP98174.1| Surface presentation of antigens protein spaP [Yersinia ruckeri
           ATCC 29473]
          Length = 218

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 120/211 (56%), Gaps = 14/211 (6%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            I  + ++ P ++   TCF +  IV  ++R  MG+  +P N+ +  +AL ++ +VM P +
Sbjct: 9   AIVALTTLLPFIIAAGTCFLKISIVLIMVRNAMGVQQIPSNIALNGIALLLSLFVMMPVI 68

Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAE-------PFWVFMRNNTREKDLSLFMDMAHS-S 155
           +      I   +  Q  E T +  V          +  +++  +  + LS F  +    S
Sbjct: 69  ND-----INDYVREQKVEMTDVDSVNRFVDGGLGGYKSYLKKYSDPELLSFFESVQRGRS 123

Query: 156 HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
               D+ K +   + +L P++ +SE++ +FEIGF I LPF++ID+++++I++A+GMMM+ 
Sbjct: 124 EHEIDVEKEEVTLFSLL-PAYALSEIKSAFEIGFYIYLPFVVIDLVISSILLALGMMMMS 182

Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           P +IS+P K+I FV +DGW+L+ + LV  +I
Sbjct: 183 PVTISVPIKLILFVAMDGWALISKGLVMQYI 213


>gi|171319016|ref|ZP_02908143.1| Yop virulence translocation R [Burkholderia ambifaria MEX-5]
 gi|171095771|gb|EDT40724.1| Yop virulence translocation R [Burkholderia ambifaria MEX-5]
          Length = 213

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 66/198 (33%), Positives = 111/198 (56%), Gaps = 2/198 (1%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDR-SI 107
           L I P   ++VT + +  IVF++++  +G+   P  LV  +LAL +T +VM+P L   S 
Sbjct: 16  LGIVPAACVLVTSYTKISIVFALVKNAIGIQQTPSALVTNALALIVTMFVMAPVLTEVSR 75

Query: 108 EMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHI 167
            M   P       E  +   V +P   FM+ +   ++ +  +  A               
Sbjct: 76  NMASGPSREQSRIEWVS-NAVGKPVGEFMKKHVDPREQARLIASAERIWPEAMAKAAKPD 134

Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227
           ++ IL P+F ISE+  +F+IGF++ L F+ ID+IVA I+MAMGM+M  PT +S+P K++ 
Sbjct: 135 DFFILAPAFAISEITAAFKIGFVLYLAFVAIDLIVANILMAMGMIMFSPTIVSIPLKIVL 194

Query: 228 FVLIDGWSLLVENLVKSF 245
           F + DGWS L+++L+ ++
Sbjct: 195 FAMADGWSRLIQSLILTY 212


>gi|331674342|ref|ZP_08375102.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli TA280]
 gi|331068436|gb|EGI39831.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli TA280]
          Length = 221

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 121/214 (56%), Gaps = 20/214 (9%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            I ++ ++ P ++   TCF +F IVF I+R  +G+  VP N+ +  +AL ++ +VM P  
Sbjct: 9   AILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMPVG 68

Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAE----------PFWVFMRNNTREKDLSLF--MDM 151
                   + + NN   E  +   VA            +  ++   +  + +S F  +  
Sbjct: 69  --------KEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQK 120

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
            +SS  N +I  +++I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GM
Sbjct: 121 GNSSEDNEEIIDDENISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGM 180

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MM+ P +IS P K+I FV +DGW++L + L+  +
Sbjct: 181 MMMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214


>gi|34498079|ref|NP_902294.1| surface presentation of antigens protein SpaP [Chromobacterium
           violaceum ATCC 12472]
 gi|34103934|gb|AAQ60294.1| surface presentation of antigens; secretory proteins
           [Chromobacterium violaceum ATCC 12472]
          Length = 220

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 113/201 (56%), Gaps = 9/201 (4%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P L+   TCF +F IVF ++R  +G+  VP N+ +  +AL ++ +VM P   ++   G  
Sbjct: 18  PFLIASGTCFVKFSIVFVMVRNALGLQQVPSNMTLNGIALMLSMFVMLPVAQQA--YGYY 75

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRN---NTREKDLSLFMDMAHSSHRNTDITK----ND 165
                  T   A+    E      R       + +L+ F + A S     D  +    +D
Sbjct: 76  QEERVSFTSVEAVNNFVENGLDGYRGYLQKYSDPELTRFFEKAQSQRSERDGGEAAAPDD 135

Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225
                 L+P++ +SE++ +F+IGF + LPF+++D++++++++A+GMMM+ P +IS+P K+
Sbjct: 136 KPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVISSVLLALGMMMMSPVTISVPIKL 195

Query: 226 IFFVLIDGWSLLVENLVKSFI 246
           + FV +DGW+LL + LV  ++
Sbjct: 196 VLFVALDGWTLLSKGLVLQYL 216


>gi|126442614|ref|YP_001061222.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei 668]
 gi|134280834|ref|ZP_01767544.1| FliP family [Burkholderia pseudomallei 305]
 gi|167725906|ref|ZP_02409142.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei
           DM98]
 gi|167905065|ref|ZP_02492270.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei NCTC
           13177]
 gi|254182913|ref|ZP_04889506.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
           1655]
 gi|254299708|ref|ZP_04967157.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
           406e]
 gi|125657197|gb|ABN48685.1| FliP [Burkholderia pseudomallei]
 gi|126222105|gb|ABN85610.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 668]
 gi|134247856|gb|EBA47940.1| FliP family [Burkholderia pseudomallei 305]
 gi|157809347|gb|EDO86517.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
           406e]
 gi|184213447|gb|EDU10490.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
           1655]
          Length = 255

 Score =  118 bits (295), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 78/192 (40%), Positives = 111/192 (57%), Gaps = 4/192 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P L I++T F RF IV ++LR  +G+    P  VI  +AL +T  VM P         I+
Sbjct: 64  PALAIVMTSFLRFAIVLALLRQALGLQQGLPARVITGVALLLTLLVMRPVGLDVWRHAIE 123

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P   ++IT   AI R  +P   FM   T +  L     +  S  R  D+ K +   + + 
Sbjct: 124 PYDRDEITFREAIARAEQPVSRFMLAQTSKASLEQISRL--SGER--DVAKPEDHAFVVK 179

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
             +FM+SEL+ +F+IG ++ LPFLIID++VA+ +MAMGMMML P  ISLP K++ FVL+D
Sbjct: 180 AAAFMMSELKTAFQIGAMLFLPFLIIDLVVASTLMAMGMMMLSPLVISLPLKLLLFVLVD 239

Query: 233 GWSLLVENLVKS 244
           GW+L V  L  S
Sbjct: 240 GWTLTVNTLTTS 251


>gi|300310129|ref|YP_003774221.1| type III secretion HrcR transmembrane protein [Herbaspirillum
           seropedicae SmR1]
 gi|300072914|gb|ADJ62313.1| type III secretion HrcR transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 220

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 117/207 (56%), Gaps = 5/207 (2%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           +  ++++ P++++  T F +  +V  +LR  +G+  VPP L I  +AL ++ ++M+PT+ 
Sbjct: 14  LLALMALVPLMVVTTTSFLKISLVLLVLRNAIGVQQVPPTLAIYGIALALSVFIMAPTVQ 73

Query: 105 ----RSIEMGI-QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
               R++ + +  P  +  +      Q   +P   FM   +  +   +F+  A       
Sbjct: 74  EVGKRAMAVDVSHPAASRTVPILERAQDAFDPLRKFMLKMSHAEQREMFLASAKKLWPKE 133

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                   +  ILIP+F++SEL+  +EIGFLI +PF++ID++++ ++MA+GM  + P +I
Sbjct: 134 AAKDAQPTDALILIPAFVVSELQTGYEIGFLIYIPFVVIDLLISNLLMALGMQQVSPQTI 193

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
           ++P K++ F L+ GW+ L+  L  S++
Sbjct: 194 TIPLKLLLFTLVGGWAKLLNALAMSYV 220


>gi|284922803|emb|CBG35891.1| type III secretion system protein [Escherichia coli 042]
          Length = 221

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 123/214 (57%), Gaps = 20/214 (9%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            I ++ ++ P ++   TCF +F IVF I+R  +G+  VP N+ +  +AL ++ +VM P  
Sbjct: 9   AILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGIALLLSMFVMMP-- 66

Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAE----------PFWVFMRNNTREKDLSLF--MDM 151
                +G + + NN   E  +   VA            +  ++   +  + +S F  +  
Sbjct: 67  -----VG-KEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQK 120

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
            +SS  N +I  +++I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GM
Sbjct: 121 VNSSEDNEEIIDDENISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGM 180

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MM+ P +IS P K+I FV +DGW++L + L+  +
Sbjct: 181 MMMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214


>gi|300936202|ref|ZP_07151138.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 21-1]
 gi|300458659|gb|EFK22152.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 21-1]
          Length = 221

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 121/214 (56%), Gaps = 20/214 (9%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            I ++ ++ P ++   TCF +F IVF I+R  +G+  VP N+ +  +AL ++ +VM P  
Sbjct: 9   AILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMPVG 68

Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAE----------PFWVFMRNNTREKDLSLF--MDM 151
                   + + NN   E  +   VA            +  ++   +  + +S F  +  
Sbjct: 69  --------KEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFGKIQK 120

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
            +SS  N +I  +++I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GM
Sbjct: 121 VNSSEDNEEIIDDENISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGM 180

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MM+ P +IS P K+I FV +DGW++L + L+  +
Sbjct: 181 MMMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214


>gi|301027456|ref|ZP_07190793.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 69-1]
 gi|300394964|gb|EFJ78502.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 69-1]
 gi|323966655|gb|EGB62087.1| YscR/HrcR family protein type III secretion lipoprotein
           [Escherichia coli M863]
 gi|323978518|gb|EGB73600.1| YscR/HrcR family protein type III secretion lipoprotein
           [Escherichia coli TW10509]
          Length = 221

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 123/214 (57%), Gaps = 20/214 (9%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            I ++ ++ P ++   TCF +F IVF I+R  +G+  VP N+ +  +AL ++ +VM P  
Sbjct: 9   AILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMP-- 66

Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAE----------PFWVFMRNNTREKDLSLF--MDM 151
                +G + + NN   E  +   VA            +  ++   +  + +S F  +  
Sbjct: 67  -----VG-KEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQK 120

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
            +SS  N +I  +++I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GM
Sbjct: 121 VNSSEDNEEIIDDENISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGM 180

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MM+ P +IS P K+I FV +DGW++L + L+  +
Sbjct: 181 MMMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214


>gi|51103119|gb|AAT96262.1| HrcR [Pseudomonas viridiflava]
 gi|51103161|gb|AAT96303.1| HrcR [Pseudomonas viridiflava]
 gi|51103202|gb|AAT96343.1| HrcR [Pseudomonas viridiflava]
          Length = 193

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/199 (33%), Positives = 116/199 (58%), Gaps = 14/199 (7%)

Query: 56  LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMG--IQP 113
           +I+ T F +  +V  I R  +G+   PPN+ +  +AL  T ++M+P      EMG  ++ 
Sbjct: 1   MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFS---EMGDRVKK 57

Query: 114 L---MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR---NTDITKNDHI 167
           L   ++      +A + V EP   FM   TR  D  +   +  ++ R        K    
Sbjct: 58  LPEHLDTFAAMESAGKHVVEPLRTFM---TRNLDPDIQTHLLENTQRMWPKEMADKASRD 114

Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227
           +  +++P+F++SEL+  F+IGFLI +PF++ID+IV+ I++A+GM M+ P +ISLP K++ 
Sbjct: 115 DLLLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILL 174

Query: 228 FVLIDGWSLLVENLVKSFI 246
           FVL+DGW+ L++ L  S++
Sbjct: 175 FVLVDGWTRLLDGLFYSYM 193


>gi|268592375|ref|ZP_06126596.1| type III secretion apparatus protein, YscR/HrcR family [Providencia
           rettgeri DSM 1131]
 gi|291312161|gb|EFE52614.1| type III secretion apparatus protein, YscR/HrcR family [Providencia
           rettgeri DSM 1131]
          Length = 232

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 122/235 (51%), Gaps = 32/235 (13%)

Query: 35  ISTWIVRTFGIFTILSIAPILLIMV------------TCFPRFIIVFSILRTGMGMGSVP 82
           +S W+++ F + TI    P+L I+             TC+ +  IV  ++R  MG+  VP
Sbjct: 2   LSVWVIKEFNMPTIPDGIPLLAIIAFSTLLPFVIAAGTCYLKISIVLIMVRNAMGVQQVP 61

Query: 83  PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN--- 139
             +V+  +AL ++ +VM P L           +NN + +        E    F+ N    
Sbjct: 62  STMVLNGIALLLSIFVMMPVLQD---------VNNHMRQEQVDFSNVESIDNFVENGLGG 112

Query: 140 -------TREKDLSLFMDMAHSSHRNTDITKNDHIEYRI-LIPSFMISELRRSFEIGFLI 191
                    +  L  F +         +IT ++       L+P++ +SE++ +FEIGF I
Sbjct: 113 YKSYLKKYSDPQLVTFFESIQQGRSEEEITADEGKATLFSLLPAYALSEIKSAFEIGFYI 172

Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
            LPF+++D+++++I++A+GMMM+ P +IS+P K+I FV IDGWSL+ + LV  +I
Sbjct: 173 YLPFVVVDLVISSILLALGMMMMSPVTISIPVKLILFVAIDGWSLISKGLVMQYI 227


>gi|289624375|ref|ZP_06457329.1| type III secretion system protein [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|330868641|gb|EGH03350.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 218

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 115/208 (55%), Gaps = 12/208 (5%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           +   + + P+ ++ +T F +  +V  ++R  +G+   PPNLV+  +AL ++ YV +P + 
Sbjct: 14  VVATIGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIALILSVYVTTPLIG 73

Query: 105 ---RSIEMGIQPLMN-NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH---SSHR 157
              R ++     L N  Q+ E  +  R   P    +     E +   F+       S   
Sbjct: 74  DMYREVQGRDLSLQNVQQLEELGSALR--PPLQAHLSKFANESERGFFVQATETIWSPEA 131

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
             D+  +D +   +LIP+F+ SEL R+FEIGFL+ +PFL++D++V+ ++M MGM M+ PT
Sbjct: 132 RADLRDDDLV---VLIPAFVSSELTRAFEIGFLLYIPFLVVDLLVSNVLMTMGMSMVSPT 188

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
            IS+P K+  FV + GWS L+  L+ S+
Sbjct: 189 LISIPLKIFLFVALSGWSRLMHGLILSY 216


>gi|116872065|ref|YP_848846.1| flagellar biosynthesis protein FliP [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116740943|emb|CAK20063.1| flagellar biosynthesis protein FliP [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 255

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 114/200 (57%), Gaps = 4/200 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V  F + T+LS++  +++M T F   IIV  + R G+G  ++PPN V++ LALF++ ++M
Sbjct: 52  VALFVLVTVLSLSASIVLMFTHFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMM 111

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P +    +   +P    + T +            ++  NT + D+++ +     +    
Sbjct: 112 QPLITAWYDDVYKPSQKEEWTASKVWDETKPLLTKYVAENTYKHDINMML----KAEGED 167

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            ITK +      L+P+F+++++ + F  G  I L F+ ID+IV+T++M +GMMM+PP +I
Sbjct: 168 PITKKEDAPLMALMPAFILTQITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTI 227

Query: 220 SLPFKVIFFVLIDGWSLLVE 239
           SLPFK++ F+ I G+ L+  
Sbjct: 228 SLPFKILVFIFIGGYGLITN 247


>gi|259908638|ref|YP_002648994.1| surface presentation of antigens protein SpaP [Erwinia pyrifoliae
           Ep1/96]
 gi|224964260|emb|CAX55767.1| type III secretion apparatus [Erwinia pyrifoliae Ep1/96]
          Length = 223

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 122/210 (58%), Gaps = 10/210 (4%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
           G+ +  ++ P L+   TCF +F IV  ++R  +G+  VP NL +  +AL ++ +VM P  
Sbjct: 10  GVLSFFTLLPFLIAGGTCFIKFSIVLVMMRNALGIQQVPSNLTLNGIALILSAFVMMPVC 69

Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN---NTREKDLSLFMDMAHSSHRNT- 159
            R I   ++   +    ++ AI ++ +      R    +  + DL  F +       +  
Sbjct: 70  QR-IADDVES-RHIDFNQSGAIPQLMDDGLGSYREYLVHYSDHDLIHFFNKVQKKRNDDN 127

Query: 160 --DITKND--HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
             DIT+++   +    L+P++ +SE++ +F+I F I +PF++IDM+V++I++A+GMMM+ 
Sbjct: 128 EVDITEHELRRLPLMTLMPAYALSEIQSAFKIAFYIYIPFVVIDMVVSSILLALGMMMMS 187

Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           P +IS+P K+I FV +DGWSLL + L+  +
Sbjct: 188 PVTISIPIKLILFVAMDGWSLLAKGLITQY 217


>gi|283478610|emb|CAY74526.1| Surface presentation of antigens protein SpaP [Erwinia pyrifoliae
           DSM 12163]
          Length = 229

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 66/210 (31%), Positives = 122/210 (58%), Gaps = 10/210 (4%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
           G+ +  ++ P L+   TCF +F IV  ++R  +G+  VP NL +  +AL ++ +VM P  
Sbjct: 16  GVLSFFTLLPFLIAGGTCFIKFSIVLVMMRNALGIQQVPSNLTLNGIALILSAFVMMPVC 75

Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN---NTREKDLSLFMDMAHSSHRN-- 158
            R I   ++   +    ++ AI ++ +      R    +  + DL  F +       +  
Sbjct: 76  QR-IADDVES-RHIDFNQSGAIPQLMDDGLGSYREYLVHYSDHDLIHFFNKVQKKRNDDN 133

Query: 159 -TDITKND--HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
             DIT+++   +    L+P++ +SE++ +F+I F I +PF++IDM+V++I++A+GMMM+ 
Sbjct: 134 EVDITEHELRRLPLMTLMPAYALSEIQSAFKIAFYIYIPFVVIDMVVSSILLALGMMMMS 193

Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           P +IS+P K+I FV +DGWSLL + L+  +
Sbjct: 194 PVTISIPIKLILFVAMDGWSLLAKGLITQY 223


>gi|152975180|ref|YP_001374697.1| flagellar biosynthesis protein FliP [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023932|gb|ABS21702.1| Triacylglycerol lipase [Bacillus cytotoxicus NVH 391-98]
          Length = 252

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 111/186 (59%), Gaps = 6/186 (3%)

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F  F+IV  I R G+G+ ++PPN V++ LALF++ + M P L +       P+   +I
Sbjct: 70  THFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKGDVWDPMTKEKI 129

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMI 178
           T + A ++ A     +M  +T + DL + + +     R  ++ KN   I    L+PSF +
Sbjct: 130 TVSQAAEKTAPIMKEYMAKHTYKHDLKMMLKV-----RGEELPKNMKDISLFTLVPSFTL 184

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           +++++    G  I L F+ ID+I++T++M +GMMM+PP  +SLPFK++ F+ + G++ +V
Sbjct: 185 TQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFIYLGGYTKIV 244

Query: 239 ENLVKS 244
           + + K+
Sbjct: 245 DIMFKT 250


>gi|227357591|ref|ZP_03841944.1| flagellar biosynthesis protein FliP [Proteus mirabilis ATCC 29906]
 gi|227162301|gb|EEI47305.1| flagellar biosynthesis protein FliP [Proteus mirabilis ATCC 29906]
          Length = 219

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 120/199 (60%), Gaps = 8/199 (4%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P ++   TC+ +F IV  + R  +G+  VP N+V+ ++AL M  +VM+P         I+
Sbjct: 18  PFIIAAGTCYLKFSIVLVMTRNALGVQQVPSNMVLNAIALMMALFVMTPITKNICYYVIE 77

Query: 113 PLMNNQITETTAIQRVA-EPFWVFMRN--NTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169
             ++  ++   AI+  + E    + +   +  + DL  F + A  +  N+D  K ++IE 
Sbjct: 78  NKVD--MSSPDAIESFSNEALGDYKKYLYHYSDPDLLAFFEQAQENRPNSDGDK-ENIEN 134

Query: 170 RIL--IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227
            +L  +P++ +SE++ +F IGF + LPF++ID++V+ I++A+GMMM+ P ++S+P K+I 
Sbjct: 135 SLLSLLPAYALSEIKSAFIIGFYLYLPFIVIDLVVSCILLALGMMMMSPITLSVPLKLIL 194

Query: 228 FVLIDGWSLLVENLVKSFI 246
           F+ +DGW LL + L+  ++
Sbjct: 195 FIAMDGWGLLSKGLINQYL 213


>gi|71735866|ref|YP_274731.1| type III secretion system protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71556419|gb|AAZ35630.1| type III secretion component, putative [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 218

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 65/207 (31%), Positives = 113/207 (54%), Gaps = 10/207 (4%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           +   + + P+ ++ +T F +  +V  ++R  +G+   PPNLV+  +AL ++ YV +P + 
Sbjct: 14  VVATIGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIALILSVYVTTPLIG 73

Query: 105 ---RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH---SSHRN 158
              R ++     L N Q  E      +       +     E +   F+       S    
Sbjct: 74  DMYREVQGRDLSLQNVQQLEELG-SALCPTLQAHLSKFANESERGFFVQATETIWSPEAR 132

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
            D+  +D +   +LIP+F+ SEL R+FEIGFL+ +PFL++D++V+ ++MAMGM M+ PT 
Sbjct: 133 ADLRDDDLV---VLIPAFVSSELTRAFEIGFLLYIPFLVVDLLVSNVLMAMGMSMVSPTL 189

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IS+P K+  FV + GWS L+  L+ S+
Sbjct: 190 ISIPLKIFLFVALSGWSRLMHGLILSY 216


>gi|312172195|emb|CBX80452.1| Surface presentation of antigens protein SpaP [Erwinia amylovora
           ATCC BAA-2158]
          Length = 229

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 118/210 (56%), Gaps = 10/210 (4%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            + +  ++ P ++   TCF +F IV  ++R  +G+  VP NL +  ++L +T ++M P  
Sbjct: 16  AVLSFFTLLPFIIAGGTCFIKFSIVLVMMRNALGIQQVPSNLTLNGISLILTAFIMMPVC 75

Query: 104 DRSIE-MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT 162
            R I+ +  + +  NQ +  +  Q V +    +        D  L         RN D T
Sbjct: 76  QRIIDDVETRHIDFNQSSAFS--QFVNDGLDGYREYLVHYSDHDLIHFFNKVQQRNNDDT 133

Query: 163 KNDHIEYRI-------LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
             +  E+ +       L+P++ +SE++ +F+I F I +PF++IDM+V++I++A+GMMM+ 
Sbjct: 134 VANTFEHELTRLPLMTLMPAYALSEIQSAFKIAFYIYIPFVVIDMVVSSILLALGMMMMS 193

Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           P +IS+P K+I FV +DGWSLL + L+  +
Sbjct: 194 PVTISIPIKLILFVAMDGWSLLTKGLIAQY 223


>gi|307944366|ref|ZP_07659707.1| type III secretion apparatus protein, YscR/HrcR family [Roseibium
           sp. TrichSKD4]
 gi|307772712|gb|EFO31932.1| type III secretion apparatus protein, YscR/HrcR family [Roseibium
           sp. TrichSKD4]
          Length = 212

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 113/205 (55%), Gaps = 3/205 (1%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
           G+  + SI P  ++  T F +   +  ILR  +G+   PPN+ + ++ L +  ++ +P  
Sbjct: 9   GMLILASIVPFFIVGTTAFIKIATILFILRNAIGLQQTPPNMALYAITLALVAFIQAPVF 68

Query: 104 DRSIE-MGIQPL-MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
             + + +   P+  N+  +   A  +  +P   FM  +    D + F+D  +  ++ + +
Sbjct: 69  VATYDILAALPIDFNSPASLQDAFVKGLQPISDFMNKHVTLADKTFFLDAGNELYKGSRL 128

Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
              ++  + +L+P+FM +EL  + + G LI LPFL ID++V  I+ A+GM M+ P  ISL
Sbjct: 129 KVTEN-SFLVLLPAFMNAELNAALQAGVLIFLPFLAIDIVVTNILSALGMSMVSPMVISL 187

Query: 222 PFKVIFFVLIDGWSLLVENLVKSFI 246
           PFKV+ FV  DGWS L  +L+ S+I
Sbjct: 188 PFKVLLFVAADGWSKLTHSLILSYI 212


>gi|289433954|ref|YP_003463826.1| flagellar biosynthesis protein FliP [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289170198|emb|CBH26738.1| flagellar biosynthesis protein FliP [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|313639091|gb|EFS04067.1| flagellar biosynthesis protein FliP [Listeria seeligeri FSL S4-171]
          Length = 255

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 113/198 (57%), Gaps = 4/198 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V  F + TILS++  +++M T F   IIV  + R G+G  ++PPN V++ LALF++ ++M
Sbjct: 52  VALFVLVTILSLSASIVLMFTHFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMM 111

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P +    +   +P    + + +            ++  NT + D+    +M   +    
Sbjct: 112 QPLITAWYDDVYKPSQTEEWSASKVWDETKPLLTKYVAENTYKHDI----NMMLKAEGEK 167

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +TK +      L+P+F+++++ + F  G  I L F+ ID+IV+T++M +GMMM+PP +I
Sbjct: 168 PVTKKEDAPLMALMPAFILTQITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTI 227

Query: 220 SLPFKVIFFVLIDGWSLL 237
           SLPFK++ F+ I G+ L+
Sbjct: 228 SLPFKILVFIFIGGYGLI 245


>gi|197286517|ref|YP_002152389.1| surface presentation of antigens protein SpaP [Proteus mirabilis
           HI4320]
 gi|194684004|emb|CAR45294.1| type III secretion system protein [Proteus mirabilis HI4320]
          Length = 219

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 120/199 (60%), Gaps = 8/199 (4%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P ++   TC+ +F IV  + R  +G+  VP N+V+ ++AL M  +VM+P         I+
Sbjct: 18  PFIIAAGTCYLKFSIVLVMTRNALGVQQVPSNMVLNAIALMMALFVMTPITKNICYYIIE 77

Query: 113 PLMNNQITETTAIQRVA-EPFWVFMRN--NTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169
             ++  ++   AI+  + E    + +   +  + DL  F + A  +  N+D  K ++IE 
Sbjct: 78  NKVD--MSSPDAIESFSNEALGDYKKYLYHYSDPDLLAFFEQAQENRPNSDGDK-ENIEN 134

Query: 170 RIL--IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227
            +L  +P++ +SE++ +F IGF + LPF++ID++V+ I++A+GMMM+ P ++S+P K+I 
Sbjct: 135 SLLSLLPAYALSEIKSAFIIGFYLYLPFIVIDLVVSCILLALGMMMMSPITLSVPLKLIL 194

Query: 228 FVLIDGWSLLVENLVKSFI 246
           F+ +DGW LL + L+  ++
Sbjct: 195 FIAMDGWGLLSKGLINQYL 213


>gi|313634413|gb|EFS01000.1| flagellar biosynthesis protein FliP [Listeria seeligeri FSL N1-067]
          Length = 255

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 114/198 (57%), Gaps = 4/198 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V  F + TILS++  +++M T F   IIV  + R G+G  ++PPN V++ LALF++ ++M
Sbjct: 52  VALFVLVTILSLSASIVLMFTHFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMM 111

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P +    +   +P    + + +            ++  NT + D+++ +     +    
Sbjct: 112 QPLITAWYDDVYKPSQTEEWSASKVWDETKPLLTKYVAENTYKHDINMMLK----AEGEE 167

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +TK +      L+P+F+++++ + F  G  I L F+ ID+IV+T++M +GMMM+PP +I
Sbjct: 168 PVTKKEDAPLMALMPAFILTQITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTI 227

Query: 220 SLPFKVIFFVLIDGWSLL 237
           SLPFK++ F+ I G+ L+
Sbjct: 228 SLPFKILVFIFIGGYGLI 245


>gi|315301906|ref|ZP_07872919.1| flagellar biosynthesis protein FliP [Listeria ivanovii FSL F6-596]
 gi|313629722|gb|EFR97842.1| flagellar biosynthesis protein FliP [Listeria ivanovii FSL F6-596]
          Length = 255

 Score =  115 bits (288), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 113/200 (56%), Gaps = 4/200 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V  F + T+LS++  +++M T F   IIV  + R G+G  ++PPN V++ LALF++ ++M
Sbjct: 52  VALFVLVTVLSLSASIVLMFTHFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMM 111

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P +    +   +P    + + +            ++  NT + D+    +M   +    
Sbjct: 112 QPLITAWYDDVYKPSQTEEWSASKVWDETKPLLTKYVAENTYKHDI----NMMLKAEGEK 167

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +TK +      L+P+F+++++ + F  G  I L F+ ID+IV+T++M +GMMM+PP +I
Sbjct: 168 PVTKKEDAPLMALMPAFILTQITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTI 227

Query: 220 SLPFKVIFFVLIDGWSLLVE 239
           SLPFK++ F+ I G+ L+  
Sbjct: 228 SLPFKILVFIFIGGYGLITN 247


>gi|254255057|ref|ZP_04948374.1| Type III secretory pathway component EscR [Burkholderia dolosa
           AUO158]
 gi|124899702|gb|EAY71545.1| Type III secretory pathway component EscR [Burkholderia dolosa
           AUO158]
          Length = 278

 Score =  115 bits (288), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 122/220 (55%), Gaps = 29/220 (13%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP-- 101
           G+   +S+ P +L   TC+ +F IVF I+R  +G+  VP NLV+ ++AL M+ +VM P  
Sbjct: 66  GLLAFVSLLPFVLAAGTCYLKFSIVFVIVRNAIGLQQVPSNLVLNAVALMMSIFVMMPVG 125

Query: 102 ------TLDRSIEM----GIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMD 150
                  LD  ++      +Q  ++  +      +QR ++P            +L+ F  
Sbjct: 126 KAIYDQQLDNPVDFTSRESVQQFVDGGLGGYRQYLQRYSDP------------ELTAFFQ 173

Query: 151 MAH----SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
                      +     ++      L+P++ +SE++ +F+IGF I LPF+I+D++V++++
Sbjct: 174 KIQVDRAVDADHAADASDEEPAIAALLPAYALSEIKSAFKIGFYIYLPFIIVDLVVSSVL 233

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +A+GMMM+ P  IS+P K+I FV +DGWS+L + LVK ++
Sbjct: 234 LALGMMMMSPVVISVPIKLILFVSLDGWSILSKGLVKQYL 273


>gi|313624918|gb|EFR94826.1| flagellar biosynthesis protein FliP [Listeria innocua FSL J1-023]
          Length = 255

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 114/198 (57%), Gaps = 4/198 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V  F + T+LS++  +++M T F   IIV  + R G+G  ++PPN V++ LALF++ ++M
Sbjct: 52  VALFVLVTVLSLSASIVLMFTHFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMM 111

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P +    +   +P    + + +            ++  NT + D+++ +     +    
Sbjct: 112 QPLITAWYDDVYKPSQKEEWSASKVWDETQPLLTKYVAENTYKHDINMML----KAEGEE 167

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +TK +      L+P+F+++++ + F  G  I L F+ ID+IV+T++M +GMMM+PP +I
Sbjct: 168 PVTKKEDAPLMALMPAFILTQITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTI 227

Query: 220 SLPFKVIFFVLIDGWSLL 237
           SLPFK++ F+ I G+ L+
Sbjct: 228 SLPFKILVFIFIGGYGLI 245


>gi|16799759|ref|NP_470027.1| flagellar biosynthesis protein FliP [Listeria innocua Clip11262]
 gi|16413136|emb|CAC95916.1| lin0684 [Listeria innocua Clip11262]
 gi|313620096|gb|EFR91601.1| flagellar biosynthesis protein FliP [Listeria innocua FSL S4-378]
          Length = 255

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 114/198 (57%), Gaps = 4/198 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V  F + T+LS++  +++M T F   IIV  + R G+G  ++PPN V++ LALF++ ++M
Sbjct: 52  VALFVLVTVLSLSASIVLMFTHFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMM 111

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P +    +   +P    + + +            ++  NT + D+++ +     +    
Sbjct: 112 QPLITAWYDDVYKPSQKEEWSASKVWDETQPLLTKYVAENTYKHDINMML----KAEGED 167

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +TK +      L+P+F+++++ + F  G  I L F+ ID+IV+T++M +GMMM+PP +I
Sbjct: 168 PVTKKEDAPLMALMPAFILTQITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTI 227

Query: 220 SLPFKVIFFVLIDGWSLL 237
           SLPFK++ F+ I G+ L+
Sbjct: 228 SLPFKILVFIFIGGYGLI 245


>gi|315281327|ref|ZP_07869975.1| flagellar biosynthetic protein FliP [Listeria marthii FSL S4-120]
 gi|313615025|gb|EFR88521.1| flagellar biosynthetic protein FliP [Listeria marthii FSL S4-120]
          Length = 219

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 114/200 (57%), Gaps = 4/200 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V  F + T+LS++  +++M T F   IIV  + R G+G  ++PPN V++ LALF++ ++M
Sbjct: 16  VALFVLVTVLSLSASIVLMFTHFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMM 75

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P +    +   +P    + + +            ++  NT + D+++ +     +    
Sbjct: 76  QPLITAWYDDVYKPSQKEEWSASKVWDETQPLLTKYVAENTYKHDINMML----KAEGED 131

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +TK +      L+P+F+++++ + F  G  I L F+ ID+IV+T++M +GMMM+PP +I
Sbjct: 132 PVTKKEDAPLMALMPAFILTQITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTI 191

Query: 220 SLPFKVIFFVLIDGWSLLVE 239
           SLPFK++ F+ I G+ L+  
Sbjct: 192 SLPFKILVFIFIGGYGLITN 211


>gi|46906927|ref|YP_013316.1| flagellar biosynthesis protein FliP [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47091639|ref|ZP_00229435.1| flagellar biosynthesis protein FliP [Listeria monocytogenes str. 4b
           H7858]
 gi|226223307|ref|YP_002757414.1| flagellar biosynthesic protein FliP [Listeria monocytogenes
           Clip81459]
 gi|254824044|ref|ZP_05229045.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
           J1-194]
 gi|254853119|ref|ZP_05242467.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
           R2-503]
 gi|254932044|ref|ZP_05265403.1| flagellar biosynthesis protein FliP [Listeria monocytogenes
           HPB2262]
 gi|255521627|ref|ZP_05388864.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
           J1-175]
 gi|300764487|ref|ZP_07074480.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
           N1-017]
 gi|46880193|gb|AAT03493.1| flagellar biosynthesis protein FliP [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47019958|gb|EAL10695.1| flagellar biosynthesis protein FliP [Listeria monocytogenes str. 4b
           H7858]
 gi|225875769|emb|CAS04472.1| Putative flagellar biosynthesic protein FliP [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258606470|gb|EEW19078.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
           R2-503]
 gi|293583597|gb|EFF95629.1| flagellar biosynthesis protein FliP [Listeria monocytogenes
           HPB2262]
 gi|293593273|gb|EFG01034.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
           J1-194]
 gi|300514841|gb|EFK41895.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
           N1-017]
 gi|328467245|gb|EGF38325.1| flagellar biosynthesis protein FliP [Listeria monocytogenes 1816]
 gi|328475641|gb|EGF46390.1| flagellar biosynthesis protein FliP [Listeria monocytogenes 220]
 gi|332311101|gb|EGJ24196.1| Flagellar biosynthesis protein FliP [Listeria monocytogenes str.
           Scott A]
          Length = 255

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 114/198 (57%), Gaps = 4/198 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V  F + T+LS++  +++M T F   IIV  + R G+G  ++PPN V++ LALF++ ++M
Sbjct: 52  VALFVLVTVLSLSASIVLMFTHFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMM 111

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P +    +   +P    + + +            ++  NT + D+++ +     +    
Sbjct: 112 QPLITAWYDDVYKPSQKEEWSASKVWDETKPLLTKYVAENTYKHDINMML----KAEGED 167

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +TK +      L+P+F+++++ + F  G  I L F+ ID+IV+T++M +GMMM+PP +I
Sbjct: 168 PVTKKEDAPLMALMPAFILTQITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTI 227

Query: 220 SLPFKVIFFVLIDGWSLL 237
           SLPFK++ F+ I G+ L+
Sbjct: 228 SLPFKILVFIFIGGYGLI 245


>gi|313610171|gb|EFR85472.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
           F2-208]
          Length = 252

 Score =  115 bits (287), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 114/198 (57%), Gaps = 4/198 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V  F + T+LS++  +++M T F   IIV  + R G+G  ++PPN V++ LALF++ ++M
Sbjct: 52  VALFVLVTVLSLSASIVLMFTHFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMM 111

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P +    +   +P    + + +            ++  NT + D+++ +     +    
Sbjct: 112 QPLITAWYDDVYKPSQKEEWSASKVWDETQPLLTKYVAENTYKHDINMML----KAEGED 167

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +TK +      L+P+F+++++ + F  G  I L F+ ID+IV+T++M +GMMM+PP +I
Sbjct: 168 PVTKKEDAPLMALMPAFILTQITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTI 227

Query: 220 SLPFKVIFFVLIDGWSLL 237
           SLPFK++ F+ I G+ L+
Sbjct: 228 SLPFKILVFIFIGGYGLI 245


>gi|47095241|ref|ZP_00232852.1| flagellar biosynthesis protein FliP [Listeria monocytogenes str.
           1/2a F6854]
 gi|224498759|ref|ZP_03667108.1| flagellar biosynthesis protein FliP [Listeria monocytogenes Finland
           1988]
 gi|254829333|ref|ZP_05234020.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
           N3-165]
 gi|254900088|ref|ZP_05260012.1| flagellar biosynthesis protein FliP [Listeria monocytogenes J0161]
 gi|254911359|ref|ZP_05261371.1| flagellar biosynthesis protein FliP [Listeria monocytogenes J2818]
 gi|254935686|ref|ZP_05267383.1| flagellar biosynthesis protein FliP [Listeria monocytogenes F6900]
 gi|284801006|ref|YP_003412871.1| flagellar biosynthesis protein FliP [Listeria monocytogenes
           08-5578]
 gi|284994148|ref|YP_003415916.1| flagellar biosynthesis protein FliP [Listeria monocytogenes
           08-5923]
 gi|47016312|gb|EAL07234.1| flagellar biosynthesis protein FliP [Listeria monocytogenes str.
           1/2a F6854]
 gi|258601745|gb|EEW15070.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
           N3-165]
 gi|258608268|gb|EEW20876.1| flagellar biosynthesis protein FliP [Listeria monocytogenes F6900]
 gi|284056568|gb|ADB67509.1| flagellar biosynthesis protein FliP [Listeria monocytogenes
           08-5578]
 gi|284059615|gb|ADB70554.1| flagellar biosynthesis protein FliP [Listeria monocytogenes
           08-5923]
 gi|293589295|gb|EFF97629.1| flagellar biosynthesis protein FliP [Listeria monocytogenes J2818]
          Length = 255

 Score =  115 bits (287), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 114/198 (57%), Gaps = 4/198 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V  F + T+LS++  +++M T F   IIV  + R G+G  ++PPN V++ LALF++ ++M
Sbjct: 52  VALFVLVTVLSLSASIVLMFTHFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMM 111

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P +    +   +P    + + +            ++  NT + D+++ +     +    
Sbjct: 112 QPLITAWYDDVYKPSQKEEWSASKVWDETQPLLTKYVAENTYKHDINMML----KAEGED 167

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +TK +      L+P+F+++++ + F  G  I L F+ ID+IV+T++M +GMMM+PP +I
Sbjct: 168 PVTKKEDAPLMALMPAFILTQITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTI 227

Query: 220 SLPFKVIFFVLIDGWSLL 237
           SLPFK++ F+ I G+ L+
Sbjct: 228 SLPFKILVFIFIGGYGLI 245


>gi|299822252|ref|ZP_07054138.1| flagellar biosynthesis protein FliP [Listeria grayi DSM 20601]
 gi|299815781|gb|EFI83019.1| flagellar biosynthesis protein FliP [Listeria grayi DSM 20601]
          Length = 255

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 111/200 (55%), Gaps = 4/200 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V  F I T+LS++  +++M T F   IIV  + R G+G  ++PPN V++ LALF+  ++M
Sbjct: 52  VSLFLIVTLLSLSASIVLMFTHFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLAIFMM 111

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P  +   +   +P    +   +   +        ++  NT   D+++ +     +    
Sbjct: 112 QPVANEWYQDVWKPGQKEEWKASKVWKETQPILTTYIAKNTYRHDINMMLK----AEGKK 167

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            + K +      L+P+F+++++ + F  G  I L F+ ID++V+T++M +GMMM+PP +I
Sbjct: 168 AVAKKEDASLMALMPAFILTQITQGFLTGMFIYLAFVFIDLVVSTLLMYLGMMMVPPMTI 227

Query: 220 SLPFKVIFFVLIDGWSLLVE 239
           SLPFK++ F+ I G+ L+  
Sbjct: 228 SLPFKILVFIFIGGYGLITN 247


>gi|16802718|ref|NP_464203.1| flagellar biosynthesis protein FliP [Listeria monocytogenes EGD-e]
 gi|224502019|ref|ZP_03670326.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
           R2-561]
 gi|16410065|emb|CAC98754.1| lmo0676 [Listeria monocytogenes EGD-e]
          Length = 255

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 114/198 (57%), Gaps = 4/198 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V  F + T+LS++  +++M T F   IIV  + R G+G  ++PPN V++ LALF++ ++M
Sbjct: 52  VALFVLVTVLSLSASIVLMFTHFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMM 111

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P +    +   +P    + + +            ++  NT + D+++ +     +    
Sbjct: 112 QPLITAWYDDVYKPSQKEEWSASKVWDETQPLLTKYVAENTYKHDINMML----KAEGED 167

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +TK +      L+P+F+++++ + F  G  I L F+ ID+IV+T++M +GMMM+PP +I
Sbjct: 168 PVTKKEDAPLMALMPAFILTQITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTI 227

Query: 220 SLPFKVIFFVLIDGWSLL 237
           SLPFK++ F+ I G+ L+
Sbjct: 228 SLPFKILVFIFIGGYGLI 245


>gi|290892876|ref|ZP_06555867.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
           J2-071]
 gi|290557688|gb|EFD91211.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
           J2-071]
          Length = 255

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 114/198 (57%), Gaps = 4/198 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V  F + T+LS++  +++M T F   IIV  + R G+G  ++PPN V++ LALF++ ++M
Sbjct: 52  VALFVMVTVLSLSASIVLMFTHFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMM 111

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P +    +   +P    + + +            ++  NT + D+++ +     +    
Sbjct: 112 QPLITAWYDDVYKPSQKEEWSASKVWDETQPLLTKYVAENTYKHDINMML----KAEGED 167

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +TK +      L+P+F+++++ + F  G  I L F+ ID+IV+T++M +GMMM+PP +I
Sbjct: 168 PVTKKEDAPLMALMPAFILTQITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTI 227

Query: 220 SLPFKVIFFVLIDGWSLL 237
           SLPFK++ F+ I G+ L+
Sbjct: 228 SLPFKILVFIFIGGYGLI 245


>gi|293416351|ref|ZP_06658990.1| YscR/HrcR family type III secretion apparatus protein [Escherichia
           coli B185]
 gi|291431707|gb|EFF04690.1| YscR/HrcR family type III secretion apparatus protein [Escherichia
           coli B185]
          Length = 220

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 116/198 (58%), Gaps = 4/198 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P ++   TCF +F +VF ++R  +G+  VP N+V+  +AL ++ +VM P   ++++    
Sbjct: 18  PFIIASGTCFVKFSVVFIMMRNALGLQQVPSNMVLNGVALMLSAFVMYPVTQQALDYYQN 77

Query: 113 PLMNNQITETTA--IQRVAEPFWVFMRNNTREKDLSLFMDMAHS--SHRNTDITKNDHIE 168
             +N +  ++ +  ++     +  ++   + ++ ++ F D  H   S       + +   
Sbjct: 78  NSVNFRDADSVSDFVEHGLGRYREYLSRYSDKELVAFFEDAQHQRVSREEALAAEGEQTS 137

Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
              L+P++ +SE++ +F I F + LPF+++D++++++++A+GMMM+ P +IS P K+I F
Sbjct: 138 ILSLLPAYALSEIKSAFRICFYLYLPFVVVDLVISSVLLALGMMMMSPVTISTPVKLILF 197

Query: 229 VLIDGWSLLVENLVKSFI 246
           V +DGW+LL   LV  ++
Sbjct: 198 VAMDGWTLLSRGLVMQYM 215


>gi|256019339|ref|ZP_05433204.1| surface presentation of antigens protein SpaP [Shigella sp. D9]
 gi|332280453|ref|ZP_08392866.1| type III secretion protein EpaP [Shigella sp. D9]
 gi|332102805|gb|EGJ06151.1| type III secretion protein EpaP [Shigella sp. D9]
          Length = 220

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 122/214 (57%), Gaps = 21/214 (9%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            I ++ ++ P ++   TCF +F IVF I+R  +G+  VP N+ +  +AL ++ +VM P  
Sbjct: 9   AILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMP-- 66

Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAE----------PFWVFMRNNTREKDLSLF--MDM 151
                +G + + NN   E  +   VA            +  ++   +  + +S F  +  
Sbjct: 67  -----VG-KEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQK 120

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
            +SS  N +I  +D+I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GM
Sbjct: 121 VNSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGM 180

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MM  P +IS P K+I FV +DGW++L + L+  +
Sbjct: 181 MM-SPVTISTPIKLILFVAMDGWTMLSKGLILQY 213


>gi|188534036|ref|YP_001907833.1| surface presentation of antigens protein SpaP [Erwinia tasmaniensis
           Et1/99]
 gi|188029078|emb|CAO96946.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99]
          Length = 223

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 118/212 (55%), Gaps = 12/212 (5%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            + +  ++ P ++   TCF +F IV  ++R  +G+  VP NL +  +AL +T +VM P  
Sbjct: 10  ALLSFFTLLPFIIAGGTCFIKFSIVLVMMRNALGIQQVPSNLTLNGVALVLTAFVMMPVC 69

Query: 104 DRSIEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT 162
            R    G     +    E  A+ Q + E    +     R  D +L +   +  HRN ++T
Sbjct: 70  QRI--SGYIEAKSLDFNERGALSQLMNEGIESYREYLVRYSDHNLILFFNNVEHRN-EVT 126

Query: 163 KND--------HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
             D         +    L+P++ +SE++ +F I F + +PF++ID++V++I++A+GMMM+
Sbjct: 127 LEDRVPDEELSQLSLLTLMPAYALSEIQSAFRIAFYLYIPFVVIDLVVSSILLALGMMMM 186

Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
            P +IS+P K+I FV +DGW+LL + L+  ++
Sbjct: 187 SPVTISIPIKLILFVAMDGWALLAKGLITQYL 218


>gi|46203617|ref|ZP_00051259.2| COG1338: Flagellar biosynthesis pathway, component FliP
           [Magnetospirillum magnetotacticum MS-1]
          Length = 210

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/150 (40%), Positives = 93/150 (62%), Gaps = 2/150 (1%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T+L++AP +L+M T F R ++V SILR+ +G  + PPN VI+SLALF+T +VM+PT  
Sbjct: 51  LITVLALAPSVLVMATAFTRIVVVLSILRSALGTQTAPPNAVIVSLALFLTAFVMAPTAR 110

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
            +   GI+PLM  QI+++ A +R + PF   +    R ++ S  +    +  R   I + 
Sbjct: 111 EAYRAGIEPLMAGQISQSQAFERASGPFQ-DLHGAQRPREGSETVPRHGAPARPGRIQEA 169

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILP 194
                + L P+FMI  LRR+FEIGFL+ +P
Sbjct: 170 VGPGDQSL-PAFMIFGLRRAFEIGFLLFIP 198


>gi|310767462|gb|ADP12412.1| surface presentation of antigens protein SpaP [Erwinia sp. Ejp617]
          Length = 223

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 123/210 (58%), Gaps = 10/210 (4%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            + +  ++ P L+   TCF +F IV  ++R  +G+  VP NL +  +AL ++ +VM P  
Sbjct: 10  AVLSFFTLLPFLIAGGTCFIKFSIVLVMMRNALGIQQVPSNLTLNGIALILSAFVMMPVC 69

Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            R I   ++   +    ++ AI ++ +     +  ++ + +    +  F ++    + + 
Sbjct: 70  QR-IADDVES-RHIDFNQSGAIPQLMDDGLGSYREYLVHYSDHDLIHFFNNVQKKRNDDN 127

Query: 160 DITKNDHIEYRI----LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
           ++   +H   R+    L+P++ +SE++ +F+I F I +PF++IDM+V++I++A+GMMM+ 
Sbjct: 128 EVDITEHELRRLPLMTLMPAYALSEIQSAFKIAFYIYIPFVVIDMVVSSILLALGMMMMS 187

Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           P +IS+P K+I FV +DGWSLL + L+  +
Sbjct: 188 PVTISIPIKLILFVAMDGWSLLAKGLITQY 217


>gi|217965226|ref|YP_002350904.1| flagellar biosynthesis protein [Listeria monocytogenes HCC23]
 gi|217334496|gb|ACK40290.1| flagellar biosynthesis protein [Listeria monocytogenes HCC23]
 gi|307570215|emb|CAR83394.1| flagellar biosynthesis protein [Listeria monocytogenes L99]
          Length = 255

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 113/200 (56%), Gaps = 4/200 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V  F + T+LS++  +++M T F   IIV  + R G+G  ++PPN V++ LALF++ ++M
Sbjct: 52  VALFVMVTVLSLSASIVLMFTHFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMM 111

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P +    +   +P      + +            ++  NT + D+++ +     +    
Sbjct: 112 QPLITAWYDDVYKPSQKEDWSASKVWDETQPLLTKYVAENTYKHDINMML----KAEGED 167

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +TK +      L+P+F+++++ + F  G  I L F+ ID+IV+T++M +GMMM+PP +I
Sbjct: 168 PVTKKEDAPLMALMPAFILTQITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTI 227

Query: 220 SLPFKVIFFVLIDGWSLLVE 239
           SLPFK++ F+ I G+ L+  
Sbjct: 228 SLPFKILVFIFIGGYGLITN 247


>gi|292488067|ref|YP_003530944.1| surface presentation of antigens protein SpaP [Erwinia amylovora
           CFBP1430]
 gi|291553491|emb|CBA20536.1| Surface presentation of antigens protein SpaP [Erwinia amylovora
           CFBP1430]
          Length = 229

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 116/210 (55%), Gaps = 10/210 (4%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            + +  ++ P ++   TCF +F IV  ++R  +G+  VP NL +  ++L +T ++M P  
Sbjct: 16  AVLSFFTLLPFIIAGGTCFIKFSIVLVMMRNALGIQQVPSNLTLNGISLILTAFIMMPVC 75

Query: 104 DRSIE-MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT 162
            R I+ +  + +  NQ +  +  Q V +    +        D  L         RN D  
Sbjct: 76  QRIIDDVETRHIDFNQSSAFS--QFVNDGLDGYREYLVHYSDHDLIHFFNKVQQRNNDDN 133

Query: 163 KNDHIEYRI-------LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
             +  E+ +       L+P++ +SE++ +F I F I +PF++IDM+V++I++A+GMMM+ 
Sbjct: 134 VANTFEHELTRLPLMTLMPAYALSEIQSAFRIAFYIYIPFVVIDMVVSSILLALGMMMMS 193

Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           P +IS+P K+I FV +DGWSLL + L+  +
Sbjct: 194 PVTISIPIKLILFVAMDGWSLLTKGLIAQY 223


>gi|292899278|ref|YP_003538647.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291199126|emb|CBJ46240.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
          Length = 223

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 116/210 (55%), Gaps = 10/210 (4%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            + +  ++ P ++   TCF +F IV  ++R  +G+  VP NL +  ++L +T ++M P  
Sbjct: 10  AVLSFFTLLPFIIAGGTCFIKFSIVLVMMRNALGIQQVPSNLTLNGISLILTAFIMMPVC 69

Query: 104 DRSIE-MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT 162
            R I+ +  + +  NQ +  +  Q V +    +        D  L         RN D  
Sbjct: 70  QRIIDDVETRHIDFNQSSAFS--QFVNDGLDGYREYLVHYSDHDLIHFFNKVQQRNNDDN 127

Query: 163 KNDHIEYRI-------LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
             +  E+ +       L+P++ +SE++ +F I F I +PF++IDM+V++I++A+GMMM+ 
Sbjct: 128 VANTFEHELTRLPLMTLMPAYALSEIQSAFRIAFYIYIPFVVIDMVVSSILLALGMMMMS 187

Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           P +IS+P K+I FV +DGWSLL + L+  +
Sbjct: 188 PVTISIPIKLILFVAMDGWSLLTKGLIAQY 217


>gi|167030914|gb|ABZ05782.1| HrcR [Pectobacterium carotovorum subsp. carotovorum]
          Length = 217

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/203 (35%), Positives = 125/203 (61%), Gaps = 8/203 (3%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSI 107
           LS+ P+++I+ TCF +  IV  I R  +G+  VPPN+ +  +AL  T +VM+P   D S 
Sbjct: 18  LSLIPLMMIVCTCFLKIAIVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVFQDISK 77

Query: 108 EMGIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
            +  +PL    IT   A +    EP   FM   +R  D  +   +  +S  N   + ++ 
Sbjct: 78  RVQEKPLDMTDITSLQASVTYGLEPLQTFM---SRNVDPDILTHLHENSLHNVACSLSEK 134

Query: 167 IEYR---ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
           +  +   ++IP+F++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP 
Sbjct: 135 VNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPL 194

Query: 224 KVIFFVLIDGWSLLVENLVKSFI 246
           K++ FVL++GW+ L++ L  S++
Sbjct: 195 KLLLFVLVNGWTRLLDGLFYSYL 217


>gi|300906599|ref|ZP_07124290.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 84-1]
 gi|301303009|ref|ZP_07209136.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 124-1]
 gi|71388159|gb|AAZ31293.1| EpaP [Escherichia coli]
 gi|300401638|gb|EFJ85176.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 84-1]
 gi|300841673|gb|EFK69433.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 124-1]
 gi|315256734|gb|EFU36702.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 85-1]
          Length = 221

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 121/214 (56%), Gaps = 20/214 (9%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            I T+ ++ P ++   T F +F IVF I+R  +G+  VP N+ +  +AL ++ +VM P  
Sbjct: 9   AILTLFTLLPFIIASGTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMP-- 66

Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAE----------PFWVFMRNNTREKDLSLF--MDM 151
                +G +   N+Q  E  +   VA            +  ++   +  + +S F  +  
Sbjct: 67  -----VGTEIYYNSQ-NENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQK 120

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
            +SS  N +I  +D+I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GM
Sbjct: 121 VNSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGM 180

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MM+ P  IS P K+I FV +DGW++L + L+  +
Sbjct: 181 MMMSPVIISTPIKLILFVAMDGWTMLSKGLILQY 214


>gi|218696459|ref|YP_002404126.1| surface presentation of antigens protein SpaP [Escherichia coli
           55989]
 gi|218353191|emb|CAU99085.1| putative type III secretion system protein EpaP [Escherichia coli
           55989]
          Length = 221

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 121/214 (56%), Gaps = 20/214 (9%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            I T+ ++ P ++   T F +F IVF I+R  +G+  VP N+ +  +AL ++ +VM P  
Sbjct: 9   AILTLFTLLPFIIASGTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMP-- 66

Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAE----------PFWVFMRNNTREKDLSLF--MDM 151
                +G +   N+Q  E  +   VA            +  ++   +  + +S F  +  
Sbjct: 67  -----VGTEIYYNSQ-NENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQK 120

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
            +SS  N +I  +D+I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GM
Sbjct: 121 VNSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGM 180

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MM+ P  IS P K+I FV +DGW++L + L+  +
Sbjct: 181 MMMSPVIISTPIKLILFVAMDGWTMLSKGLILQY 214


>gi|30261770|ref|NP_844147.1| flagellar biosynthesis protein FliP [Bacillus anthracis str. Ames]
 gi|47527003|ref|YP_018352.1| flagellar biosynthesis protein FliP [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184604|ref|YP_027856.1| flagellar biosynthesis protein FliP [Bacillus anthracis str.
           Sterne]
 gi|65319047|ref|ZP_00392006.1| COG1338: Flagellar biosynthesis pathway, component FliP [Bacillus
           anthracis str. A2012]
 gi|165869274|ref|ZP_02213933.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
           str. A0488]
 gi|167638785|ref|ZP_02397060.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
           str. A0193]
 gi|170706438|ref|ZP_02896898.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
           str. A0389]
 gi|177650630|ref|ZP_02933597.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
           str. A0174]
 gi|190566255|ref|ZP_03019173.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
           Tsiankovskii-I]
 gi|227815461|ref|YP_002815470.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
           str. CDC 684]
 gi|229600042|ref|YP_002866159.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
           str. A0248]
 gi|254734621|ref|ZP_05192333.1| flagellar biosynthesis protein FliP [Bacillus anthracis str.
           Western North America USA6153]
 gi|254755273|ref|ZP_05207307.1| flagellar biosynthesis protein FliP [Bacillus anthracis str.
           Vollum]
 gi|254759809|ref|ZP_05211833.1| flagellar biosynthesis protein FliP [Bacillus anthracis str.
           Australia 94]
 gi|30255998|gb|AAP25633.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
           str. Ames]
 gi|47502151|gb|AAT30827.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49178531|gb|AAT53907.1| flagellar biosynthetic protein FliP, putative [Bacillus anthracis
           str. Sterne]
 gi|164714714|gb|EDR20232.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
           str. A0488]
 gi|167513249|gb|EDR88620.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
           str. A0193]
 gi|170128536|gb|EDS97403.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
           str. A0389]
 gi|172083774|gb|EDT68834.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
           str. A0174]
 gi|190562390|gb|EDV16357.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
           Tsiankovskii-I]
 gi|227003763|gb|ACP13506.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
           str. CDC 684]
 gi|229264450|gb|ACQ46087.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
           str. A0248]
          Length = 252

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 110/186 (59%), Gaps = 6/186 (3%)

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F  F+IV  I R G+G+ ++PPN V++ LALF++ + M P L +       P+   +I
Sbjct: 70  THFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKI 129

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMI 178
           T + A +  A     +M  +T + DL + + +     R  ++ K+   +    L+PSF +
Sbjct: 130 TVSQAAETTAPIMKEYMSKHTYKHDLKMMLKV-----RGEELPKDLKDLSLFTLVPSFTL 184

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           +++++    G  I L F+ ID+I++T++M +GMMM+PP  +SLPFK++ FV + G++ +V
Sbjct: 185 TQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILIFVYLGGYTKIV 244

Query: 239 ENLVKS 244
           + + K+
Sbjct: 245 DIMFKT 250


>gi|123443727|ref|YP_001007698.1| surface presentation of antigens protein SpaP [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|15088594|gb|AAK84105.1|AF369954_3 YsaR [Yersinia enterocolitica]
 gi|122090688|emb|CAL13564.1| type III secretion apparatus protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 224

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 116/206 (56%), Gaps = 14/206 (6%)

Query: 50  SIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEM 109
           S+ P ++   TC+ +  IV  ++R  MG+  VP  L +  +AL ++ +VM P +      
Sbjct: 19  SLLPFVIAAGTCYLKISIVLIMVRNAMGVQQVPSGLALNGIALLLSLFVMMPVIQD---- 74

Query: 110 GIQPLMNNQITETTAIQRVAE-------PFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT 162
            +   M  +  + + +  V +        +  +++  +  + L+ F  +         + 
Sbjct: 75  -VNHYMRTEKVDFSNVDSVDKFIDGGLGSYTAYLKKYSDPELLNFFESLQQGRSEEESMA 133

Query: 163 KNDHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
           + D  E  +  L+P++ +SE++ +FEIGF I LPF++ID+I+++I++A+GMMM+ P +IS
Sbjct: 134 EADTREPALFSLLPAYALSEIKSAFEIGFYIYLPFVVIDLIISSILLALGMMMMSPVTIS 193

Query: 221 LPFKVIFFVLIDGWSLLVENLVKSFI 246
           +P K+I FV IDGW+L+ + L+  ++
Sbjct: 194 VPVKLILFVAIDGWALISKGLIMQYM 219


>gi|42780859|ref|NP_978106.1| flagellar biosynthesis protein FliP [Bacillus cereus ATCC 10987]
 gi|49477322|ref|YP_035885.1| flagellar biosynthesis protein FliP [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52143691|ref|YP_083136.1| flagellar biosynthesis protein FliP [Bacillus cereus E33L]
 gi|167633258|ref|ZP_02391583.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
           str. A0442]
 gi|170686220|ref|ZP_02877442.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
           str. A0465]
 gi|196033278|ref|ZP_03100690.1| putative flagellar biosynthetic protein FliP [Bacillus cereus W]
 gi|196039146|ref|ZP_03106453.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
           NVH0597-99]
 gi|196045067|ref|ZP_03112300.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
           03BB108]
 gi|206974770|ref|ZP_03235685.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
           H3081.97]
 gi|217959249|ref|YP_002337797.1| flagellar biosynthesis protein FliP [Bacillus cereus AH187]
 gi|218902880|ref|YP_002450714.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
           AH820]
 gi|254683268|ref|ZP_05147129.1| flagellar biosynthesis protein FliP [Bacillus anthracis str.
           CNEVA-9066]
 gi|254723851|ref|ZP_05185637.1| flagellar biosynthesis protein FliP [Bacillus anthracis str. A1055]
 gi|254741030|ref|ZP_05198718.1| flagellar biosynthesis protein FliP [Bacillus anthracis str. Kruger
           B]
 gi|300117310|ref|ZP_07055100.1| flagellar biosynthesis protein FliP [Bacillus cereus SJ1]
 gi|42736779|gb|AAS40714.1| flagellar biosynthetic protein FliP, putative [Bacillus cereus ATCC
           10987]
 gi|49328878|gb|AAT59524.1| flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51977160|gb|AAU18710.1| flagellar biosynthetic protein P [Bacillus cereus E33L]
 gi|167531296|gb|EDR93974.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
           str. A0442]
 gi|170669917|gb|EDT20658.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
           str. A0465]
 gi|195993712|gb|EDX57668.1| putative flagellar biosynthetic protein FliP [Bacillus cereus W]
 gi|196024069|gb|EDX62743.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
           03BB108]
 gi|196030291|gb|EDX68891.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
           NVH0597-99]
 gi|206746789|gb|EDZ58181.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
           H3081.97]
 gi|217065617|gb|ACJ79867.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
           AH187]
 gi|218539563|gb|ACK91961.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
           AH820]
 gi|298725145|gb|EFI65797.1| flagellar biosynthesis protein FliP [Bacillus cereus SJ1]
 gi|324325784|gb|ADY21044.1| flagellar biosynthesis protein FliP [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 252

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 110/186 (59%), Gaps = 6/186 (3%)

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F  F+IV  I R G+G+ ++PPN V++ LALF++ + M P L +       P+   +I
Sbjct: 70  THFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKI 129

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMI 178
           T + A +  A     +M  +T + DL + + +     R  ++ K+   +    L+PSF +
Sbjct: 130 TVSQAAETTAPIMKEYMSKHTYKHDLKMMLKV-----RGEELPKDLKDLSLFTLVPSFTL 184

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           +++++    G  I L F+ ID+I++T++M +GMMM+PP  +SLPFK++ FV + G++ +V
Sbjct: 185 TQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIV 244

Query: 239 ENLVKS 244
           + + K+
Sbjct: 245 DIMFKT 250


>gi|301053304|ref|YP_003791515.1| flagellar biosynthesis protein [Bacillus anthracis CI]
 gi|300375473|gb|ADK04377.1| flagellar biosynthesis protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 252

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 110/186 (59%), Gaps = 6/186 (3%)

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F  F+IV  I R G+G+ ++PPN V++ LALF++ + M P L +       P+   +I
Sbjct: 70  THFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKI 129

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMI 178
           T + A +  A     +M  +T + DL + + +     R  ++ K+   +    L+PSF +
Sbjct: 130 TVSQAAETTAPIMKEYMSKHTYKHDLKMMLKV-----RGEELPKDLKDLSLFTLVPSFTL 184

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           +++++    G  I L F+ ID+I++T++M +GMMM+PP  +SLPFK++ FV + G++ +V
Sbjct: 185 TQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIV 244

Query: 239 ENLVKS 244
           + + K+
Sbjct: 245 DIMFKT 250


>gi|30019811|ref|NP_831442.1| flagellar biosynthesis protein FliP [Bacillus cereus ATCC 14579]
 gi|75763363|ref|ZP_00743101.1| Flagellar biosynthetic protein fliP [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|118477199|ref|YP_894350.1| flagellar biosynthesis protein FliP [Bacillus thuringiensis str. Al
           Hakam]
 gi|218235808|ref|YP_002366451.1| flagellar biosynthesis protein FliP [Bacillus cereus B4264]
 gi|218896700|ref|YP_002445111.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
           G9842]
 gi|225863624|ref|YP_002749002.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
           03BB102]
 gi|296502367|ref|YP_003664067.1| flagellar biosynthesis protein FliP [Bacillus thuringiensis BMB171]
 gi|29895356|gb|AAP08643.1| Flagellar biosynthetic protein fliP [Bacillus cereus ATCC 14579]
 gi|74489154|gb|EAO52632.1| Flagellar biosynthetic protein fliP [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|118416424|gb|ABK84843.1| flagellar biosynthetic protein P [Bacillus thuringiensis str. Al
           Hakam]
 gi|218163765|gb|ACK63757.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
           B4264]
 gi|218545099|gb|ACK97493.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
           G9842]
 gi|225787593|gb|ACO27810.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
           03BB102]
 gi|296323419|gb|ADH06347.1| flagellar biosynthesis protein FliP [Bacillus thuringiensis BMB171]
 gi|326939379|gb|AEA15275.1| flagellar biosynthesis protein FliP [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 252

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 110/186 (59%), Gaps = 6/186 (3%)

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F  F+IV  I R G+G+ ++PPN V++ LALF++ + M P L +       P+   +I
Sbjct: 70  THFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKI 129

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMI 178
           T + A +  A     +M  +T + DL + + +     R  ++ K+   +    L+PSF +
Sbjct: 130 TVSQAAETTAPIMKEYMSKHTYKHDLKMMLKV-----RGEELPKDLKDLSLFTLVPSFTL 184

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           +++++    G  I L F+ ID+I++T++M +GMMM+PP  +SLPFK++ FV + G++ +V
Sbjct: 185 TQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIV 244

Query: 239 ENLVKS 244
           + + K+
Sbjct: 245 DIMFKT 250


>gi|206970774|ref|ZP_03231726.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
           AH1134]
 gi|206734410|gb|EDZ51580.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
           AH1134]
          Length = 252

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 110/186 (59%), Gaps = 6/186 (3%)

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F  F+IV  I R G+G+ ++PPN V++ LALF++ + M P L +       P+   +I
Sbjct: 70  THFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKI 129

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMI 178
           T + A +  A     +M  +T + DL + + +     R  ++ K+   +    L+PSF +
Sbjct: 130 TVSQAAETTAPIMKEYMSKHTYKHDLKMMLKV-----RGEELPKDLKDLSLFTLVPSFTL 184

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           +++++    G  I L F+ ID+I++T++M +GMMM+PP  +SLPFK++ FV + G++ +V
Sbjct: 185 TQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIV 244

Query: 239 ENLVKS 244
           + + K+
Sbjct: 245 DIMFKT 250


>gi|47565435|ref|ZP_00236476.1| flagellar biosynthetic protein fliP [Bacillus cereus G9241]
 gi|47557425|gb|EAL15752.1| flagellar biosynthetic protein fliP [Bacillus cereus G9241]
          Length = 252

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 110/186 (59%), Gaps = 6/186 (3%)

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F  F+IV  I R G+G+ ++PPN V++ LALF++ + M P L +       P+   +I
Sbjct: 70  THFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKTDVWDPMTKEKI 129

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMI 178
           T + A +  A     +M  +T + DL + + +     R  ++ K+   +    L+PSF +
Sbjct: 130 TVSQAAETTAPIMKEYMSKHTYKHDLKMMLKV-----RGEELPKDLKDLSLFTLVPSFTL 184

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           +++++    G  I L F+ ID+I++T++M +GMMM+PP  +SLPFK++ FV + G++ +V
Sbjct: 185 TQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIV 244

Query: 239 ENLVKS 244
           + + K+
Sbjct: 245 DIMFKT 250


>gi|254830333|ref|ZP_05234988.1| flagellar biosynthesis protein FliP [Listeria monocytogenes 10403S]
          Length = 255

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 113/198 (57%), Gaps = 4/198 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V  F + T+LS++  +++M T F   IIV  + R G+G  ++PPN V++ LALF++ ++M
Sbjct: 52  VALFVLVTVLSLSASIVLMFTHFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMM 111

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P +    +   +P    + + +            ++  NT + D+++ +     +    
Sbjct: 112 QPLITAWYDDVYKPSQKEEWSASKVWDETQPLLTKYVAENTYKHDINMML----KAEGED 167

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +T  +      L+P+F+++++ + F  G  I L F+ ID+IV+T++M +GMMM+PP +I
Sbjct: 168 PVTNKEDAPLMALMPAFILTQITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTI 227

Query: 220 SLPFKVIFFVLIDGWSLL 237
           SLPFK++ F+ I G+ L+
Sbjct: 228 SLPFKILVFIFIGGYGLI 245


>gi|163939576|ref|YP_001644460.1| flagellar biosynthesis protein FliP [Bacillus weihenstephanensis
           KBAB4]
 gi|163861773|gb|ABY42832.1| Triacylglycerol lipase [Bacillus weihenstephanensis KBAB4]
          Length = 252

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 110/186 (59%), Gaps = 6/186 (3%)

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F  F+IV  I R G+G+ ++PPN V++ LALF++ + M P L +       P+   +I
Sbjct: 70  THFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKI 129

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMI 178
           T + A +  A     +M  +T + DL + + +     R  ++ K+   +    L+PSF +
Sbjct: 130 TVSQAAETTAPIMKDYMSKHTYKHDLKMMLKV-----RGEELPKDLKDLSLFTLVPSFTL 184

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           +++++    G  I L F+ ID+I++T++M +GMMM+PP  +SLPFK++ FV + G++ +V
Sbjct: 185 TQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIV 244

Query: 239 ENLVKS 244
           + + K+
Sbjct: 245 DIMFKT 250


>gi|53716462|ref|YP_106126.1| surface presentation of antigens protein SpaP [Burkholderia mallei
           ATCC 23344]
 gi|53722558|ref|YP_111543.1| surface presentation of antigens protein SpaP [Burkholderia
           pseudomallei K96243]
 gi|67641437|ref|ZP_00440216.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia mallei GB8 horse 4]
 gi|76819720|ref|YP_335736.1| surface presentation of antigens protein SpaP [Burkholderia
           pseudomallei 1710b]
 gi|124382629|ref|YP_001025864.1| surface presentation of antigens protein SpaP [Burkholderia mallei
           NCTC 10229]
 gi|126442644|ref|YP_001063161.1| surface presentation of antigens protein SpaP [Burkholderia
           pseudomallei 668]
 gi|126447432|ref|YP_001077949.1| surface presentation of antigens protein SpaP [Burkholderia mallei
           NCTC 10247]
 gi|126458099|ref|YP_001076112.1| surface presentation of antigens protein SpaP [Burkholderia
           pseudomallei 1106a]
 gi|167004216|ref|ZP_02269983.1| type III secretion system protein BsaW [Burkholderia mallei PRL-20]
 gi|167724226|ref|ZP_02407462.1| surface presentation of antigens protein SpaP [Burkholderia
           pseudomallei DM98]
 gi|167743201|ref|ZP_02415975.1| surface presentation of antigens protein SpaP [Burkholderia
           pseudomallei 14]
 gi|167820375|ref|ZP_02452055.1| surface presentation of antigens protein SpaP [Burkholderia
           pseudomallei 91]
 gi|167828747|ref|ZP_02460218.1| surface presentation of antigens protein SpaP [Burkholderia
           pseudomallei 9]
 gi|167850202|ref|ZP_02475710.1| surface presentation of antigens protein SpaP [Burkholderia
           pseudomallei B7210]
 gi|167898809|ref|ZP_02486210.1| surface presentation of antigens protein SpaP [Burkholderia
           pseudomallei 7894]
 gi|167907137|ref|ZP_02494342.1| surface presentation of antigens protein SpaP [Burkholderia
           pseudomallei NCTC 13177]
 gi|167915491|ref|ZP_02502582.1| surface presentation of antigens protein SpaP [Burkholderia
           pseudomallei 112]
 gi|167923336|ref|ZP_02510427.1| surface presentation of antigens protein SpaP [Burkholderia
           pseudomallei BCC215]
 gi|217425211|ref|ZP_03456706.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 576]
 gi|226196071|ref|ZP_03791657.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei Pakistan 9]
 gi|237509960|ref|ZP_04522675.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei MSHR346]
 gi|242313875|ref|ZP_04812892.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 1106b]
 gi|254176249|ref|ZP_04882907.1| type III secretion system protein BsaW [Burkholderia mallei ATCC
           10399]
 gi|254186856|ref|ZP_04893372.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254193764|ref|ZP_04900196.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei S13]
 gi|254200992|ref|ZP_04907357.1| type III secretion system protein BsaW [Burkholderia mallei FMH]
 gi|254204956|ref|ZP_04911309.1| type III secretion system protein BsaW [Burkholderia mallei JHU]
 gi|254265439|ref|ZP_04956304.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 1710a]
 gi|254301456|ref|ZP_04968900.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 406e]
 gi|254359075|ref|ZP_04975347.1| type III secretion system protein BsaW [Burkholderia mallei
           2002721280]
 gi|52212972|emb|CAH39010.1| surface presentation of antigens protein [Burkholderia pseudomallei
           K96243]
 gi|52422432|gb|AAU46002.1| type III secretion system protein BsaW [Burkholderia mallei ATCC
           23344]
 gi|76584193|gb|ABA53667.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 1710b]
 gi|126222135|gb|ABN85640.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 668]
 gi|126231867|gb|ABN95280.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 1106a]
 gi|126240286|gb|ABO03398.1| type III secretion system protein BsaW [Burkholderia mallei NCTC
           10247]
 gi|147748604|gb|EDK55679.1| type III secretion system protein BsaW [Burkholderia mallei FMH]
 gi|147754542|gb|EDK61606.1| type III secretion system protein BsaW [Burkholderia mallei JHU]
 gi|148028262|gb|EDK86222.1| type III secretion system protein BsaW [Burkholderia mallei
           2002721280]
 gi|157811160|gb|EDO88330.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 406e]
 gi|157934540|gb|EDO90210.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|160697291|gb|EDP87261.1| type III secretion system protein BsaW [Burkholderia mallei ATCC
           10399]
 gi|169650515|gb|EDS83208.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei S13]
 gi|217391816|gb|EEC31843.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 576]
 gi|225931964|gb|EEH27965.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei Pakistan 9]
 gi|235002165|gb|EEP51589.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei MSHR346]
 gi|238522377|gb|EEP85822.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia mallei GB8 horse 4]
 gi|242137114|gb|EES23517.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 1106b]
 gi|243060411|gb|EES42597.1| type III secretion system protein BsaW [Burkholderia mallei PRL-20]
 gi|254216441|gb|EET05826.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 1710a]
 gi|261826900|gb|ABM99812.2| type III secretion system protein BsaW [Burkholderia mallei NCTC
           10229]
          Length = 226

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 124/214 (57%), Gaps = 14/214 (6%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T  ++ P ++   +CF +F IV  ++R  +G+  VP NL + S+AL M+ +VM P   
Sbjct: 11  LLTAATLVPFVVAAGSCFIKFSIVLVLVRNALGIQQVPSNLALNSIALIMSLFVMMPVAQ 70

Query: 105 RSIE-MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL--FMDMAHSSHRNTDI 161
            +   +   PL  + ++  +  + +      + R  TR  D  L  F + A ++    D 
Sbjct: 71  SAYRYLQHHPL--DVMSGASVNEFIDGGLGDYKRYLTRYSDPELVRFFERAQTARLKGDD 128

Query: 162 TKN-------DHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
                     D ++  +  L+P++ ++E++ +F+IGF + LPFL++DM+V+++++A+GMM
Sbjct: 129 ADAADADDAPDGLDNSLFSLLPAYALTEIKSAFKIGFYLYLPFLVVDMVVSSVLLALGMM 188

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           M+ P +IS+P K+I FV +DGW+L+ + L++ ++
Sbjct: 189 MMSPVTISVPIKLILFVAMDGWTLICKGLIEQYL 222


>gi|11276516|gb|AAG33884.1| HrcR [Pseudomonas syringae pv. tomato]
          Length = 208

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/209 (34%), Positives = 121/209 (57%), Gaps = 20/209 (9%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL----- 103
           +S+ P LLI+ T F +  +   I R  +G+  VPPN+ +  +AL  T +VM+P       
Sbjct: 9   MSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVAHEMQQ 68

Query: 104 ---DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHR 157
              D  +E+G     N +  + +A + V EP   FM  NT    ++  +D          
Sbjct: 69  RVHDHPLELG-----NTEKLQASA-RTVIEPLQRFMTRNTDPDVVAHLLDNTQRMWPKEM 122

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
               +KND +   + IP+F++SEL+  FEIGFLI +PF++ID+IV+ +++A+GM M+ P 
Sbjct: 123 ADQASKNDLL---LAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPM 179

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           ++SLP K++ FV++ GWS L+++L  S++
Sbjct: 180 TLSLPLKLLLFVMVSGWSRLLDSLFYSYM 208


>gi|207109546|ref|ZP_03243708.1| flagellar biosynthesis protein FliP [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 99

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 73/90 (81%), Gaps = 1/90 (1%)

Query: 157 RNTDITKN-DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
           RN    K  D +   +LIP+FMISEL+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLP
Sbjct: 7   RNLPNPKTPDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLP 66

Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           P  ISLPFK++ F+L+DG++LL ENLV SF
Sbjct: 67  PVMISLPFKILVFILVDGFNLLTENLVASF 96


>gi|301381807|ref|ZP_07230225.1| type III secretion system protein [Pseudomonas syringae pv. tomato
           Max13]
 gi|302061998|ref|ZP_07253539.1| type III secretion system protein [Pseudomonas syringae pv. tomato
           K40]
 gi|302135080|ref|ZP_07261070.1| type III secretion system protein [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|330872918|gb|EGH07067.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330963055|gb|EGH63315.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           actinidiae str. M302091]
 gi|331015103|gb|EGH95159.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 217

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/209 (34%), Positives = 121/209 (57%), Gaps = 20/209 (9%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL----- 103
           +S+ P LLI+ T F +  +   I R  +G+  VPPN+ +  +AL  T +VM+P       
Sbjct: 18  MSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVAHEMQQ 77

Query: 104 ---DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHR 157
              D  +E+G     N +  + +A + V EP   FM  NT    ++  +D          
Sbjct: 78  RVHDHPLELG-----NTEKLQASA-RTVIEPLQRFMTRNTDPDVVAHLLDNTQRMWPKEM 131

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
               +KND +   + IP+F++SEL+  FEIGFLI +PF++ID+IV+ +++A+GM M+ P 
Sbjct: 132 ADQASKNDLL---LAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPM 188

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           ++SLP K++ FV++ GWS L+++L  S++
Sbjct: 189 TLSLPLKLLLFVMVSGWSRLLDSLFYSYM 217


>gi|323166471|gb|EFZ52235.1| surface presentation of antigens protein spaP [Shigella sonnei 53G]
          Length = 181

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 111/184 (60%), Gaps = 15/184 (8%)

Query: 71  ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN--NQITETTAIQRV 128
           ++R  +G+  VP N+ +  +AL M  +VM P     IE G +  +N   +    + I R 
Sbjct: 1   MVRNALGLQQVPSNMTLNGIALIMALFVMKPI----IEAGYENYLNGPQKFDTISDIVRF 56

Query: 129 AE----PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI--LIPSFMISELR 182
           ++     +  +++ +T   DL L      S   N D+   ++ +Y +  L+P++ +SE++
Sbjct: 57  SDSGLMEYKQYLKKHT---DLELARFFQRSEEENADLKSAENNDYSLFSLLPAYALSEIK 113

Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
            +F+IGF + LPF+++D+++++I++A+GMMM+ P +IS+P K++ FV +DGW +L + L+
Sbjct: 114 DAFKIGFYLYLPFVVVDLVISSILLALGMMMMSPITISVPIKLVLFVALDGWGILSKALI 173

Query: 243 KSFI 246
           + +I
Sbjct: 174 EQYI 177


>gi|238759389|ref|ZP_04620554.1| Surface presentation of antigens protein spaP [Yersinia aldovae
           ATCC 35236]
 gi|238702416|gb|EEP94968.1| Surface presentation of antigens protein spaP [Yersinia aldovae
           ATCC 35236]
          Length = 223

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 122/228 (53%), Gaps = 21/228 (9%)

Query: 28  NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87
            IP D+ +         I    ++ P ++   TC+ +  IV  ++R  MG+  VP +L +
Sbjct: 3   TIPGDIPL-------LAIIAFSTLLPFIIAAGTCYLKISIVLIMVRNAMGVQQVPSSLTL 55

Query: 88  ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE-------PFWVFMRNNT 140
             +AL ++ +VM P +       +   M  +  + + +  V          +  +++  +
Sbjct: 56  NGIALLLSLFVMMPVIQD-----VNQYMRTEQVDFSNVDSVDNFVEGGLGSYKAYLKKYS 110

Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRI--LIPSFMISELRRSFEIGFLIILPFLII 198
             + L+ F  +         + + D  E  +  L+P++ +SE++ +FEIGF I LPF++I
Sbjct: 111 DPELLNFFESLQQGRSEEQAMDEADTREPTLFSLLPAYALSEIKSAFEIGFYIYLPFVVI 170

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           D+I+++I++A+GMMM+ P +IS+P K+I FV IDGWSL+ + L+  ++
Sbjct: 171 DLIISSILLALGMMMMSPVTISVPVKLILFVAIDGWSLISKGLIMQYM 218


>gi|162533077|ref|NP_791222.3| type III secretion protein HrcR [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213968264|ref|ZP_03396408.1| type III secretion protein HrcR [Pseudomonas syringae pv. tomato
           T1]
 gi|28851841|gb|AAO54917.1| type III secretion protein HrcR [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213926902|gb|EEB60453.1| type III secretion protein HrcR [Pseudomonas syringae pv. tomato
           T1]
          Length = 200

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/209 (34%), Positives = 121/209 (57%), Gaps = 20/209 (9%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL----- 103
           +S+ P LLI+ T F +  +   I R  +G+  VPPN+ +  +AL  T +VM+P       
Sbjct: 1   MSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVAHEMQQ 60

Query: 104 ---DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHR 157
              D  +E+G     N +  + +A + V EP   FM  NT    ++  +D          
Sbjct: 61  RVHDHPLELG-----NTEKLQASA-RTVIEPLQRFMTRNTDPDVVAHLLDNTQRMWPKEM 114

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
               +KND +   + IP+F++SEL+  FEIGFLI +PF++ID+IV+ +++A+GM M+ P 
Sbjct: 115 ADQASKNDLL---LAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPM 171

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           ++SLP K++ FV++ GWS L+++L  S++
Sbjct: 172 TLSLPLKLLLFVMVSGWSRLLDSLFYSYM 200


>gi|256024631|ref|ZP_05438496.1| surface presentation of antigens protein SpaP [Escherichia sp.
           4_1_40B]
 gi|300950614|ref|ZP_07164516.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 116-1]
 gi|300958195|ref|ZP_07170349.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 175-1]
 gi|301026123|ref|ZP_07189597.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 196-1]
 gi|301643799|ref|ZP_07243836.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 146-1]
 gi|307139550|ref|ZP_07498906.1| surface presentation of antigens protein SpaP [Escherichia coli
           H736]
 gi|62085079|gb|AAX62943.1| type III secretion apparatus protein [Escherichia coli]
 gi|299879818|gb|EFI88029.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 196-1]
 gi|300315147|gb|EFJ64931.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 175-1]
 gi|300450094|gb|EFK13714.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 116-1]
 gi|301077832|gb|EFK92638.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 146-1]
 gi|323941617|gb|EGB37797.1| YscR/HrcR family protein type III secretion lipoprotein
           [Escherichia coli E482]
          Length = 221

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 121/207 (58%), Gaps = 6/207 (2%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            I ++ ++ P ++   T F +F IVF I+R  +G+  VP N+ +  +AL ++ +VM P +
Sbjct: 9   AILSLFTLLPFIIASGTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMP-V 67

Query: 104 DRSIEMGIQP---LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF--MDMAHSSHRN 158
            + I    Q      NN  +    ++     +  ++   +  + ++ F  +   +SS  N
Sbjct: 68  GKEIYYNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVNFFEKIQKVNSSEDN 127

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
            +I  +D+I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMMM+ P +
Sbjct: 128 EEIFDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMMMMSPVT 187

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IS P K+I FV +DGW++L + L+  +
Sbjct: 188 ISTPIKLILFVAMDGWTMLSKGLILQY 214


>gi|222095389|ref|YP_002529449.1| flagellar biosynthesis protein flip [Bacillus cereus Q1]
 gi|221239447|gb|ACM12157.1| flagellar biosynthetic protein FliP [Bacillus cereus Q1]
          Length = 252

 Score =  112 bits (279), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 110/186 (59%), Gaps = 6/186 (3%)

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F  F+IV  I R G+G+ ++PPN V++ LALF++ + M P L +       P+   +I
Sbjct: 70  THFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKI 129

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMI 178
           T + A +  A     +M  +T + DL + + +     R  ++ K+   +    L+PSF +
Sbjct: 130 TVSQAAETTAPIMKEYMSKHTYKHDLKMMLKV-----RGEELPKDLKDLSLFTLVPSFTL 184

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           +++++    G  I L F+ ID+I++T++M +GM+M+PP  +SLPFK++ FV + G++ +V
Sbjct: 185 TQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMLMVPPMILSLPFKILVFVYLGGYTKIV 244

Query: 239 ENLVKS 244
           + + K+
Sbjct: 245 DIMFKT 250


>gi|167573308|ref|ZP_02366182.1| surface presentation of antigens protein SpaP [Burkholderia
           oklahomensis C6786]
          Length = 229

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 122/217 (56%), Gaps = 17/217 (7%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T  ++ P ++   +CF +F IV  ++R  +G+  VP NL + S+AL M+ +VM P   
Sbjct: 11  LLTAATLVPFVVAAGSCFIKFSIVLVLVRNALGIQQVPSNLALNSIALIMSLFVMMPVAQ 70

Query: 105 RSIE-MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL--FMDMAHSSHRN--- 158
            +   +   PL  + +  T+    +      + R  TR  D  L  F + A +S      
Sbjct: 71  SAYRYLQHHPL--DVMNGTSVNDFIDGGLGDYKRYLTRYSDPELVRFFERAQASRLKGDD 128

Query: 159 -------TDITKNDHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
                      + D  +  +  L+P++ ++E++ +F+IGF + LPFL++DM+V+++++A+
Sbjct: 129 ADAADADVAGDEPDGFDNSLFTLLPAYALTEIKSAFKIGFYLYLPFLVVDMVVSSVLLAL 188

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           GMMM+ P +IS+P K+I FV +DGW+L+ + L++ ++
Sbjct: 189 GMMMMSPVTISVPIKLILFVAMDGWTLISKGLIEQYL 225


>gi|170018891|ref|YP_001723845.1| surface presentation of antigens protein SpaP [Escherichia coli
           ATCC 8739]
 gi|169753819|gb|ACA76518.1| Yop virulence translocation R [Escherichia coli ATCC 8739]
          Length = 221

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 121/207 (58%), Gaps = 6/207 (2%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            I ++ ++ P ++   T F +F IVF I+R  +G+  VP N+ +  +AL ++ +VM P +
Sbjct: 9   AILSLFTLLPFIIASGTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMP-V 67

Query: 104 DRSIEMGIQPL---MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF--MDMAHSSHRN 158
            + I    Q      NN  +    ++     +  ++   +  + ++ F  +   +SS  N
Sbjct: 68  GKEIYYNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVNFFEKIQKVNSSEDN 127

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
            +I  +D+I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMMM+ P +
Sbjct: 128 EEIFDDDNIPIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMMMMSPVT 187

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IS P K+I FV +DGW++L + L+  +
Sbjct: 188 ISTPIKLILFVAMDGWTMLSKGLILQY 214


>gi|134282034|ref|ZP_01768740.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 305]
 gi|134246563|gb|EBA46651.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 305]
          Length = 226

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 123/214 (57%), Gaps = 14/214 (6%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T  ++ P ++   +CF +F IV  ++R  +G+  VP NL + S+AL M+ +VM P   
Sbjct: 11  LLTAATLVPFVVAAGSCFIKFSIVLVLVRNALGIQQVPSNLALNSIALIMSLFVMMPVAQ 70

Query: 105 RSIE-MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL--FMDMAHSSHRNTDI 161
            +   +   PL  + ++  +  + +      + R   R  D  L  F + A ++    D 
Sbjct: 71  SAYRYLQHHPL--DVMSGASVNEFIDGGLGDYKRYLARYSDPELVRFFERAQTARLKGDD 128

Query: 162 TKN-------DHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
                     D ++  +  L+P++ ++E++ +F+IGF + LPFL++DM+V+++++A+GMM
Sbjct: 129 ADAADADDAPDGLDNSLFSLLPAYALTEIKSAFKIGFYLYLPFLVVDMVVSSVLLALGMM 188

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           M+ P +IS+P K+I FV +DGW+L+ + L++ ++
Sbjct: 189 MMSPVTISVPIKLILFVAMDGWTLICKGLIEQYL 222


>gi|167840168|ref|ZP_02466852.1| surface presentation of antigens protein SpaP [Burkholderia
           thailandensis MSMB43]
          Length = 229

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 122/212 (57%), Gaps = 17/212 (8%)

Query: 50  SIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE- 108
           ++ P ++   +CF +F IV  ++R  +G+  VP NL + S+AL M+ +VM P    +   
Sbjct: 16  TLVPFVVAAGSCFIKFSIVLVLVRNALGIQQVPSNLALNSIALIMSLFVMMPVAQSAYRY 75

Query: 109 MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL--FMDMAHSSHRNTDITKN-- 164
           +   PL  + +   +    +      + R  TR  D +L  F + A ++   +D      
Sbjct: 76  LQHHPL--DVMNGASVNDFIDGGLGGYKRYLTRYSDPALVRFFERAQAARLKSDDADAAD 133

Query: 165 --------DHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
                   D ++  +  L+P++ ++E++ +F+IGF + LPFL++DM+V+++++A+GMMM+
Sbjct: 134 ADVAGDGPDGLDNSLFSLLPAYALTEIKSAFKIGFYLYLPFLVVDMVVSSVLLALGMMMM 193

Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
            P +IS+P K+I FV +DGW+L+ + L++ ++
Sbjct: 194 SPVTISVPIKLILFVAMDGWTLICKGLIEQYL 225


>gi|157162320|ref|YP_001459638.1| surface presentation of antigens protein SpaP [Escherichia coli HS]
 gi|157068000|gb|ABV07255.1| type III secretion apparatus protein EpaP [Escherichia coli HS]
          Length = 221

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 120/207 (57%), Gaps = 6/207 (2%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            I ++ ++ P ++   T F +F IVF I+R  +G+  VP N+ +  +AL ++ +VM P +
Sbjct: 9   AILSLFTLLPFIIASGTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMP-V 67

Query: 104 DRSIEMGIQP---LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF--MDMAHSSHRN 158
            + I    Q      NN  +    ++     +  ++   +  + ++ F  +   +SS  N
Sbjct: 68  GKEIYYNSQNENLSFNNLASVVNFVETGMSGYKSYLIKYSEPELVNFFEKIQKVNSSEDN 127

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
            +I  +D+I    L+P++ +SE++ +F IGF I LPF+++D++++ +++ +GMMM+ P +
Sbjct: 128 EEIFDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISIVLLTLGMMMMSPVT 187

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IS P K+I FV +DGW++L + L+  +
Sbjct: 188 ISTPIKLILFVAMDGWTMLSKGLILQY 214


>gi|83718329|ref|YP_439033.1| surface presentation of antigens protein SpaP [Burkholderia
           thailandensis E264]
 gi|167577439|ref|ZP_02370313.1| surface presentation of antigens protein SpaP [Burkholderia
           thailandensis TXDOH]
 gi|167615590|ref|ZP_02384225.1| surface presentation of antigens protein SpaP [Burkholderia
           thailandensis Bt4]
 gi|257142141|ref|ZP_05590403.1| surface presentation of antigens protein SpaP [Burkholderia
           thailandensis E264]
 gi|83652154|gb|ABC36218.1| type III secretion system protein BsaW [Burkholderia thailandensis
           E264]
          Length = 230

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 124/218 (56%), Gaps = 18/218 (8%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T  ++ P ++   +CF +F IV  ++R  +G+  VP NL + S+AL M+ +VM P   
Sbjct: 11  LLTAATLVPFVVAAGSCFIKFSIVLVLVRNALGIQQVPSNLALNSIALIMSLFVMMPVAQ 70

Query: 105 RSIE-MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL--FMDMAHSSHRNTDI 161
            +   +   PL  + +  ++    +      + R  TR  D  L  F + A ++    D 
Sbjct: 71  SAYRYLQHHPL--DVMNGSSVNDFIDGGLGDYKRYLTRYSDPELVRFFERAQAARLKRDD 128

Query: 162 -----------TKNDHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
                       + D ++  +  L+P++ ++E++ +F+IGF + LPFL++DM+V+++++A
Sbjct: 129 ADAADADADAGDEPDGLDNSLFSLLPAYALTEIKSAFKIGFYLYLPFLVVDMVVSSVLLA 188

Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +GMMM+ P +IS+P K+I FV +DGW+L+ + L++ ++
Sbjct: 189 LGMMMMSPVTISVPIKLILFVAMDGWTLICKGLIEQYL 226


>gi|167566198|ref|ZP_02359114.1| surface presentation of antigens protein SpaP [Burkholderia
           oklahomensis EO147]
          Length = 229

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 123/217 (56%), Gaps = 17/217 (7%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T  ++ P ++   +CF +F IV  ++R  +G+  VP NL + S+AL M+ +VM P   
Sbjct: 11  LLTAATLVPFVVAAGSCFIKFSIVLVLVRNALGIQQVPSNLALNSIALIMSLFVMMPVAQ 70

Query: 105 RSIE-MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL--FMDMAHSSHRNTDI 161
            +   +   PL  + +  T+    +      + R  TR  D  L  F + A ++    D 
Sbjct: 71  SAYRYLQHHPL--DVMNGTSVNDFIDGGLGDYKRYLTRYSDPELVRFFERAQAARLKGDD 128

Query: 162 T----------KNDHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
                      + D  +  +  L+P++ ++E++ +F+IGF + LPFL++DM+V+++++A+
Sbjct: 129 ADAADADVAGDEPDGFDNSLFTLLPAYALTEIKSAFKIGFYLYLPFLVVDMVVSSVLLAL 188

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           GMMM+ P +IS+P K+I FV +DGW+L+ + L++ ++
Sbjct: 189 GMMMMSPVTISVPIKLILFVAMDGWTLISKGLIEQYL 225


>gi|170698145|ref|ZP_02889224.1| Yop virulence translocation R [Burkholderia ambifaria IOP40-10]
 gi|170136910|gb|EDT05159.1| Yop virulence translocation R [Burkholderia ambifaria IOP40-10]
          Length = 223

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 116/207 (56%), Gaps = 13/207 (6%)

Query: 50  SIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEM 109
           ++ P ++   TC+ +F IV  ++R  +G+  VP NLV+ S+AL ++ +VM P   R+   
Sbjct: 16  TLLPFVIASGTCYVKFSIVLVLVRNALGIQQVPSNLVLNSIALILSLFVMMPVSYRA--Y 73

Query: 110 GIQPLMNNQITETTAIQR-VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI------- 161
           G        +T + ++   V      +     R  D SL    AH+              
Sbjct: 74  GYLQTHQVDMTNSQSLHDFVDGGLGDYKHYLERYADPSLVKFFAHAQAPRDADDGAATDD 133

Query: 162 --TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
             +  +H    +L+P++ +SE++ +F+IGF + +PFL++D+IV+ +++A+GMMM+ P +I
Sbjct: 134 DPSAREH-ALTVLLPAYALSEIKSAFKIGFYLYVPFLVVDLIVSNVLLALGMMMMSPVTI 192

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
           S+P K+I FV +DGW+L+ + L+  ++
Sbjct: 193 SVPIKLILFVAMDGWTLICKGLILQYM 219


>gi|179742375|gb|ACB86738.1| HrcR [uncultured soil bacterium]
          Length = 155

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/157 (38%), Positives = 91/157 (57%), Gaps = 8/157 (5%)

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT-----AIQRVAEP 131
           G+  VPPN+V+  LAL M+ YVM P      EMG +      I  +T     A     EP
Sbjct: 2   GVQQVPPNVVLNGLALVMSVYVMYPV---GTEMGARMQGLKDIGGSTQSMLKAADSAKEP 58

Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
              F+  ++R  +   FM  A  + +          ++ +++P+F +SEL  +FEIGFLI
Sbjct: 59  LREFLVKHSRPLERGFFMKTAQKALKPEQAATLTDRDFLVIVPAFTVSELSVAFEIGFLI 118

Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
            LPFL+ID++++ I+MAMGMMML PT++S+P K++ F
Sbjct: 119 FLPFLVIDLVISNILMAMGMMMLSPTTVSMPLKLLLF 155


>gi|254185167|ref|ZP_04891756.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 1655]
 gi|184215759|gb|EDU12740.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 1655]
          Length = 226

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 123/214 (57%), Gaps = 14/214 (6%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + T  ++ P ++   +CF +F IV  ++R  +G+  VP NL + S+AL M+ +VM P   
Sbjct: 11  LLTAATLVPFVVAAGSCFIKFSIVLVLVRNALGIQQVPSNLALNSIALIMSLFVMMPIAQ 70

Query: 105 RSIE-MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL--FMDMAHSSHRNTDI 161
            +   +   PL  + ++  +  + +      + R   R  D  L  F + A ++    D 
Sbjct: 71  SAYRYLQHHPL--DVMSGASVNEFIDGGLGDYKRYLARYSDPELVRFFERAQTARLKGDD 128

Query: 162 TKN-------DHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
                     D ++  +  L+P++ ++E++ +F+IGF + LPFL++DM+V+++++A+GMM
Sbjct: 129 ADAADADDAPDGLDNSLFSLLPAYALTEIKSAFKIGFYLYLPFLVVDMVVSSVLLALGMM 188

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           M+ P +IS+P K+I FV +DGW+L+ + L++ ++
Sbjct: 189 MMSPVTISVPIKLILFVAMDGWTLICKGLIEQYL 222


>gi|309703222|emb|CBJ02557.1| type III secretion system protein [Escherichia coli ETEC H10407]
          Length = 221

 Score =  109 bits (273), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 120/207 (57%), Gaps = 6/207 (2%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            I ++ ++ P ++   T F +F IVF I+R  +G+  VP N+ +  +AL ++ +VM P +
Sbjct: 9   AILSLFTLLPFIIASGTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMP-V 67

Query: 104 DRSIEMGIQP---LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF--MDMAHSSHRN 158
            + I    Q      NN  +    ++     +  ++   +  + ++ F  +   +SS  N
Sbjct: 68  GKEIYYNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVNFFEKIQKVNSSEDN 127

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
             I  +D+I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMMM+ P +
Sbjct: 128 EVIFDDDNISIISLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMMMMSPVT 187

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IS P K+I FV +DGW++L + L+  +
Sbjct: 188 ISTPIKLILFVAMDGWTMLSKGLILQY 214


>gi|2494567|sp|Q47856|HRCR_PANAY RecName: Full=Harpin secretion protein hrcR
 gi|1483322|emb|CAA68098.1| HrcR protein [Pantoea agglomerans]
          Length = 217

 Score =  109 bits (272), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/212 (34%), Positives = 129/212 (60%), Gaps = 15/212 (7%)

Query: 42  TFGIF-TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100
           TF +F   LS+ PIL+I+ TCF +  +V  I R  +G+  VPPN+ +  +AL  T +VM+
Sbjct: 10  TFALFLGALSLIPILMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMA 69

Query: 101 PTLDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR- 157
           P  ++  +   Q    M+N     T+I     P   FM +NT   D  + + +  +S + 
Sbjct: 70  PVFNQMQQQFSQAPADMSNMDNLKTSITNGVAPLQKFMTHNT---DPDILIHLQENSVKM 126

Query: 158 -----NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
                + D++K++ +   ++IP+F++SEL+  F+IGFLI +PF++ID+IV+ +++ +GM 
Sbjct: 127 WPKPMSDDVSKDNLL---LVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLTLGMQ 183

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           M+ P ++SLP K++  +LI+GW+ L++ L  S
Sbjct: 184 MVTPMTLSLPLKMLLLILINGWTRLLDGLFYS 215


>gi|229160728|ref|ZP_04288720.1| Flagellar biosynthetic protein FliP [Bacillus cereus R309803]
 gi|228622743|gb|EEK79577.1| Flagellar biosynthetic protein FliP [Bacillus cereus R309803]
          Length = 177

 Score =  109 bits (272), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 107/180 (59%), Gaps = 6/180 (3%)

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
           +IV  I R G+G+ ++PPN V++ LALF++ + M P L +       P+   QIT + A 
Sbjct: 1   MIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEQITVSQAA 60

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMISELRRS 184
           +  A     +M  +T + DL + + +     R  ++ K+   +    L+PSF ++++++ 
Sbjct: 61  ETTAPIMKDYMSKHTYKHDLKMMLKV-----RGEELPKDLKDLSLFTLVPSFTLTQIQKG 115

Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
              G  I L F+ ID+I++T++M +GMMM+PP  +SLPFK++ FV + G++ +V+ + K+
Sbjct: 116 LLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIVDIMFKT 175


>gi|229096251|ref|ZP_04227224.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock3-29]
 gi|229102365|ref|ZP_04233073.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock3-28]
 gi|229115206|ref|ZP_04244616.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock1-3]
 gi|228668346|gb|EEL23778.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock1-3]
 gi|228681012|gb|EEL35181.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock3-28]
 gi|228687211|gb|EEL41116.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock3-29]
          Length = 177

 Score =  109 bits (272), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 107/180 (59%), Gaps = 6/180 (3%)

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
           +IV  I R G+G+ ++PPN V++ LALF++ + M P L +       P+   QIT + A 
Sbjct: 1   MIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEQITVSQAA 60

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMISELRRS 184
           +  A     +M  +T + DL + + +     R  ++ K+   +    L+PSF ++++++ 
Sbjct: 61  ETTAPIMKDYMAKHTYKHDLKMMLKV-----RGEELPKDLKDLSLFTLVPSFTLTQIQKG 115

Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
              G  I L F+ ID+I++T++M +GMMM+PP  +SLPFK++ FV + G++ +V+ + K+
Sbjct: 116 LLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIVDIMFKT 175


>gi|261344591|ref|ZP_05972235.1| type III secretion apparatus protein, YscR/HrcR family [Providencia
           rustigianii DSM 4541]
 gi|282567505|gb|EFB73040.1| type III secretion apparatus protein, YscR/HrcR family [Providencia
           rustigianii DSM 4541]
          Length = 221

 Score =  108 bits (271), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 114/205 (55%), Gaps = 22/205 (10%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P ++   TC+ +  IV  ++R  MG+  VP  + +  +AL ++ +VM P L        Q
Sbjct: 21  PFIIAAGTCYLKISIVLIMVRNAMGVQQVPSTMALNGIALLLSIFVMMPIL--------Q 72

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNN-TREKD---------LSLFMDMAHSSHRNTDIT 162
            + N+  +E      V E    F+ N   R KD         L  F +         +++
Sbjct: 73  DVNNHMRSERVDFSNV-ESIDNFVDNGLGRYKDYLVKYSDPQLVTFFESVQQGKSEAEVS 131

Query: 163 KNDHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
           + +  E  +  L+P++ +SE++ +FEIGF I LPF++ID+++++I++A+GMMM+ P +IS
Sbjct: 132 E-EQAEPTLFSLLPAYALSEIKSAFEIGFYIYLPFVVIDLVISSILLALGMMMMSPVTIS 190

Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245
           +P K+I FV IDGWSL+ + LV  +
Sbjct: 191 VPVKLILFVAIDGWSLISKGLVMQY 215


>gi|188026435|ref|ZP_02962073.2| hypothetical protein PROSTU_04166 [Providencia stuartii ATCC 25827]
 gi|188019857|gb|EDU57897.1| hypothetical protein PROSTU_04166 [Providencia stuartii ATCC 25827]
          Length = 227

 Score =  108 bits (271), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 129/229 (56%), Gaps = 26/229 (11%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           ++SI +  +    + ++ ++ P ++   TC+ +  IV  ++R  MG+  VP  + +  +A
Sbjct: 6   NMSIVSNEIPMLALVSLATLLPFIIAAGTCYLKISIVLIMVRNAMGVQQVPSTMALNGIA 65

Query: 92  LFMTFYVMSPTL--------DRSIEMG----IQPLMNNQITETTA-IQRVAEPFWVFMRN 138
           + ++ +VM P +        +  ++ G    +   ++  +    A +Q+ ++P  V    
Sbjct: 66  MLLSLFVMMPVVQDISHYMREEKVDFGNVESVDNFVDGGLGRYKAYLQKYSDPELVQFFE 125

Query: 139 NTREKDLSLFMDM-AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197
           + +++     MD  AHS+   +            L+P++ +SE++ +FEIGF I LPF++
Sbjct: 126 SVQQQRNEEPMDAEAHSATLFS------------LLPAYALSEVKSAFEIGFYIYLPFVV 173

Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           ID+++++I++A+GMMM+ P +IS+P K+I FV IDGWSL+ + LV  ++
Sbjct: 174 IDLVISSILLALGMMMMSPVTISVPVKLILFVAIDGWSLISKGLVMQYL 222


>gi|229011059|ref|ZP_04168253.1| Flagellar biosynthetic protein FliP [Bacillus mycoides DSM 2048]
 gi|228750231|gb|EEM00063.1| Flagellar biosynthetic protein FliP [Bacillus mycoides DSM 2048]
          Length = 177

 Score =  108 bits (271), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 108/180 (60%), Gaps = 6/180 (3%)

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
           +IV  I R G+G+ ++PPN V++ LALF++ + M P L +       P+   +IT + A 
Sbjct: 1   MIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKITVSQAA 60

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMISELRRS 184
           +  A     +M  +T + DL + + +     R  ++ K+   +    L+PSF ++++++ 
Sbjct: 61  ETTAPIMKDYMSKHTYKHDLKMMLKV-----RGEELPKDLKDLSLFTLVPSFTLTQIQKG 115

Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
              G  I L F+ ID+I++T++M +GMMM+PP+ +SLPFK++ FV + G++ +V+ + K+
Sbjct: 116 LLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPSILSLPFKILVFVYLGGYTKIVDIMFKT 175


>gi|51102999|gb|AAT96146.1| HrcR [Pseudomonas viridiflava]
          Length = 217

 Score =  108 bits (270), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 75/212 (35%), Positives = 122/212 (57%), Gaps = 26/212 (12%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL----- 103
           LS+ P LLI+ T F +  +   I R  +G+  VPPN+ +  +AL  T +VM+P       
Sbjct: 18  LSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVAHDIQQ 77

Query: 104 ---DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR--- 157
              D  +E+G    +       T+++ V EP   FM   TR  D  +   +  ++ R   
Sbjct: 78  RVHDHPLELGSADKLQ------TSLRTVIEPLQRFM---TRNTDPDVVAHLLENTQRMWP 128

Query: 158 ---NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
                  TK+D +   + IP+F++SEL+  FEIGFLI +PF++ID+IV+ +++A+GM M+
Sbjct: 129 KEMADQATKDDLL---LAIPAFVMSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMV 185

Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
            P +ISLP K++ FVL+ GWS L+++L  S++
Sbjct: 186 SPMTISLPLKLLLFVLVSGWSRLLDSLFYSYM 217


>gi|85058547|ref|YP_454249.1| surface presentation of antigens protein SpaP [Sodalis glossinidius
           str. 'morsitans']
 gi|45504755|gb|AAS66846.1| YsaR [Sodalis glossinidius]
 gi|84779067|dbj|BAE73844.1| type III secretion apparatus SpaP [Sodalis glossinidius str.
           'morsitans']
          Length = 226

 Score =  108 bits (270), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 60/206 (29%), Positives = 114/206 (55%), Gaps = 11/206 (5%)

Query: 50  SIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEM 109
           ++ P ++   TC+ +F IV  ++R  +G+  +P  L +  +AL +T +VM P   ++I  
Sbjct: 16  TLLPFVIAGGTCYIKFSIVLVMVRNALGIQQIPSTLTLNGIALILTAFVMMPVC-QNISH 74

Query: 110 GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIE- 168
            I+    N     + +Q V +    +     R  D  L      + HR +   +   +E 
Sbjct: 75  YIETHQTNFNNIDSTMQFVDQGLGSYRDYLVRYSDKKLIRFFCETQHRQSGGEQETDLEC 134

Query: 169 ---------YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                      +L+P++ +SE++ +F+I F + +PF++IDM+V++I++A+GMMM+ P +I
Sbjct: 135 TEENMSSLSLMMLMPAYALSEVQSAFKIAFFLYVPFVVIDMVVSSILLALGMMMMSPVTI 194

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           S+P K+I FV +DGW+LL + L+  +
Sbjct: 195 SIPIKLILFVAMDGWTLLTKGLILQY 220


>gi|227328491|ref|ZP_03832515.1| type III secretion system protein [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 217

 Score =  108 bits (270), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 71/200 (35%), Positives = 121/200 (60%), Gaps = 2/200 (1%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSI 107
           LS+ P+++I+ TCF +  IV  I R  +G+  VPPN+ +  +AL  T +VM+P   D S 
Sbjct: 18  LSLIPLMMIVCTCFLKIAIVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVFQDISK 77

Query: 108 EMGIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
            +  +PL    IT   A +    EP  +FM  N     L+   + +      +   K + 
Sbjct: 78  RVQEKPLDMTDITSLQASVTYGLEPLQMFMSRNVDPDILTHLHENSLQMWPASLSEKVNT 137

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
               ++IP+F++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP K++
Sbjct: 138 QNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPLKLL 197

Query: 227 FFVLIDGWSLLVENLVKSFI 246
            FVL++GW+ L++ L  S++
Sbjct: 198 LFVLVNGWTRLLDGLFYSYL 217


>gi|34500877|gb|AAQ73905.1| HrcR [Pectobacterium carotovorum subsp. carotovorum]
          Length = 217

 Score =  108 bits (270), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 70/200 (35%), Positives = 121/200 (60%), Gaps = 2/200 (1%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSI 107
           LS+ P+++I+ TCF +  IV  I R  +G+  VPPN+ +  +AL  T +VM+P   D + 
Sbjct: 18  LSLIPLMMIVCTCFLKIAIVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVFQDITK 77

Query: 108 EMGIQPLMNNQITE-TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
            +  +PL    IT   T++    EP   FM  N     L+   + +      +   K + 
Sbjct: 78  RVQEKPLDMTDITSLQTSVTYGLEPLQTFMSRNVDPDILTHLHENSLQMWPASLSEKVNT 137

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
               ++IP+F++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP K++
Sbjct: 138 QNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPLKLL 197

Query: 227 FFVLIDGWSLLVENLVKSFI 246
            FVL++GW+ L++ L  S++
Sbjct: 198 LFVLVNGWTRLLDGLFYSYL 217


>gi|227114168|ref|ZP_03827824.1| type III secretion system protein [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
 gi|253688597|ref|YP_003017787.1| Yop virulence translocation R [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251755175|gb|ACT13251.1| Yop virulence translocation R [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 217

 Score =  108 bits (270), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 71/200 (35%), Positives = 120/200 (60%), Gaps = 2/200 (1%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSI 107
           LS+ P+++I+ TCF +  IV  I R  +G+  VPPN+ +  +AL  T +VM+P   D S 
Sbjct: 18  LSLIPLMMIVCTCFLKIAIVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVFQDISK 77

Query: 108 EMGIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
            +  +PL    IT   A +    EP   FM  N     L+   + +      +   K + 
Sbjct: 78  RVQEKPLDMTDITSLQASVTYGLEPLQTFMSRNVDPDILTHLHENSLQMWPASLSEKVNT 137

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
               ++IP+F++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP K++
Sbjct: 138 QNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPLKLL 197

Query: 227 FFVLIDGWSLLVENLVKSFI 246
            FVL++GW+ L++ L  S++
Sbjct: 198 LFVLVNGWTRLLDGLFYSYL 217


>gi|254992443|ref|ZP_05274633.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
           J2-064]
          Length = 258

 Score =  108 bits (270), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 108/189 (57%), Gaps = 4/189 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V  F + T+LS++  +++M T F   IIV  + R G+G  ++PPN V++ LALF++ ++M
Sbjct: 52  VALFVLVTVLSLSASIVLMFTHFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMM 111

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P +    +   +P    + + +            ++  NT + D+++ +     +    
Sbjct: 112 QPLITAWYDDVYKPSQKEEWSASKVWDETKPLLTKYVAENTYKHDINMML----KAEGED 167

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +TK +      L+P+F+++++ + F  G  I L F+ ID+IV+T++M +GMMM+PP +I
Sbjct: 168 PVTKKEDAPLMALMPAFILTQITQGFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTI 227

Query: 220 SLPFKVIFF 228
           SLPFK++ F
Sbjct: 228 SLPFKILVF 236


>gi|186976183|gb|ACD01065.1| EpaP [Escherichia coli O157:H7 str. EC10]
          Length = 221

 Score =  108 bits (269), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 121/214 (56%), Gaps = 20/214 (9%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            I ++ ++ P ++   TCF +F IVF I+R  +G+  VP N+ +  +AL ++ +VM P  
Sbjct: 9   AILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMPVG 68

Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAE----------PFWVFMRNNTREKDLSLF--MDM 151
                     + NN   E  +   VA            +  ++R  +  + +S F  +  
Sbjct: 69  KE--------IYNNSQNENLSFNNVASVVNFVETGMSGYKSYLRKYSEPELVSFFEKIQK 120

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
            +SS  N DI  +D+I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GM
Sbjct: 121 VNSSEDNEDIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGM 180

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MM+ P +IS P K+I FV +DGW++L + L+  +
Sbjct: 181 MMMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214


>gi|146305087|ref|YP_001185552.1| type III secretion system protein [Pseudomonas mendocina ymp]
 gi|145573288|gb|ABP82820.1| Yop virulence translocation R [Pseudomonas mendocina ymp]
          Length = 217

 Score =  108 bits (269), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 71/203 (34%), Positives = 118/203 (58%), Gaps = 8/203 (3%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP-TLDRSI 107
           LS+ P LLI+ T F +  +   I R  +G+  VPPN+ I  +AL  T +VM+P   +   
Sbjct: 18  LSLIPFLLIVCTAFLKIAMTLMITRNAIGVQQVPPNMAIYGIALAATMFVMAPVAYEIQN 77

Query: 108 EMGIQPLMNNQITETTAIQ----RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163
            +   PL    ++ T ++Q     V EP   FM NNT     +  ++            K
Sbjct: 78  RLSDNPL---DLSSTDSLQASAGNVVEPLQDFMVNNTDPDIATHLLENTQRMWPREMSEK 134

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
               +  + IP+F++SEL+ +F+IGFLI +PF++ID+I++ +++A+GM M+ P +ISLP 
Sbjct: 135 ASKSDLLLAIPAFVLSELQAAFQIGFLIYIPFIVIDLIISNLLLALGMQMVSPMTISLPL 194

Query: 224 KVIFFVLIDGWSLLVENLVKSFI 246
           K++ FVL+DGW+ L+ +L  S++
Sbjct: 195 KLLLFVLVDGWTRLLNSLFYSYM 217


>gi|50121007|ref|YP_050174.1| type III secretion system protein [Pectobacterium atrosepticum
           SCRI1043]
 gi|42560424|gb|AAS20384.1| HrcR [Pectobacterium atrosepticum]
 gi|49611533|emb|CAG74981.1| type III secretion protein [Pectobacterium atrosepticum SCRI1043]
          Length = 217

 Score =  108 bits (269), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 71/200 (35%), Positives = 120/200 (60%), Gaps = 2/200 (1%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSI 107
           LS+ P+++I+ TCF +  IV  I R  +G+  VPPN+ +  +AL  T +VM+P   D S 
Sbjct: 18  LSLIPLMMIVCTCFLKIAIVLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVFQDISK 77

Query: 108 EMGIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
            +  +PL    IT   A +    EP   FM  N     L+   + +      +   K + 
Sbjct: 78  RVQEKPLDMTDITSLQASVTYGLEPLQTFMSRNVDPDILTHLHENSLQMWPASLSEKVNT 137

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
               ++IP+F++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP K++
Sbjct: 138 QNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPLKLL 197

Query: 227 FFVLIDGWSLLVENLVKSFI 246
            FVL++GW+ L++ L  S++
Sbjct: 198 LFVLVNGWTRLLDGLFYSYL 217


>gi|228900348|ref|ZP_04064577.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis IBL
           4222]
 gi|228907399|ref|ZP_04071257.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis IBL
           200]
 gi|228914344|ref|ZP_04077959.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228920476|ref|ZP_04083821.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228926802|ref|ZP_04089870.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228933050|ref|ZP_04095913.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228938879|ref|ZP_04101479.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228945369|ref|ZP_04107724.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228952149|ref|ZP_04114241.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228958047|ref|ZP_04119782.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228964750|ref|ZP_04125857.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228971760|ref|ZP_04132381.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978369|ref|ZP_04138746.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis Bt407]
 gi|228984851|ref|ZP_04145021.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229029446|ref|ZP_04185529.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH1271]
 gi|229043522|ref|ZP_04191231.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH676]
 gi|229069317|ref|ZP_04202607.1| Flagellar biosynthetic protein FliP [Bacillus cereus F65185]
 gi|229078948|ref|ZP_04211500.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock4-2]
 gi|229090729|ref|ZP_04221962.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock3-42]
 gi|229109222|ref|ZP_04238821.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock1-15]
 gi|229121318|ref|ZP_04250549.1| Flagellar biosynthetic protein FliP [Bacillus cereus 95/8201]
 gi|229127093|ref|ZP_04256090.1| Flagellar biosynthetic protein FliP [Bacillus cereus BDRD-Cer4]
 gi|229138466|ref|ZP_04267055.1| Flagellar biosynthetic protein FliP [Bacillus cereus BDRD-ST26]
 gi|229149971|ref|ZP_04278197.1| Flagellar biosynthetic protein FliP [Bacillus cereus m1550]
 gi|229155337|ref|ZP_04283447.1| Flagellar biosynthetic protein FliP [Bacillus cereus ATCC 4342]
 gi|229172412|ref|ZP_04299971.1| Flagellar biosynthetic protein FliP [Bacillus cereus MM3]
 gi|229178174|ref|ZP_04305545.1| Flagellar biosynthetic protein FliP [Bacillus cereus 172560W]
 gi|229183958|ref|ZP_04311173.1| Flagellar biosynthetic protein FliP [Bacillus cereus BGSC 6E1]
 gi|229189864|ref|ZP_04316874.1| Flagellar biosynthetic protein FliP [Bacillus cereus ATCC 10876]
 gi|229195978|ref|ZP_04322731.1| Flagellar biosynthetic protein FliP [Bacillus cereus m1293]
 gi|228587537|gb|EEK45602.1| Flagellar biosynthetic protein FliP [Bacillus cereus m1293]
 gi|228593538|gb|EEK51347.1| Flagellar biosynthetic protein FliP [Bacillus cereus ATCC 10876]
 gi|228599483|gb|EEK57088.1| Flagellar biosynthetic protein FliP [Bacillus cereus BGSC 6E1]
 gi|228605304|gb|EEK62754.1| Flagellar biosynthetic protein FliP [Bacillus cereus 172560W]
 gi|228610883|gb|EEK68146.1| Flagellar biosynthetic protein FliP [Bacillus cereus MM3]
 gi|228628052|gb|EEK84769.1| Flagellar biosynthetic protein FliP [Bacillus cereus ATCC 4342]
 gi|228633493|gb|EEK90096.1| Flagellar biosynthetic protein FliP [Bacillus cereus m1550]
 gi|228645003|gb|EEL01246.1| Flagellar biosynthetic protein FliP [Bacillus cereus BDRD-ST26]
 gi|228656209|gb|EEL12050.1| Flagellar biosynthetic protein FliP [Bacillus cereus BDRD-Cer4]
 gi|228662163|gb|EEL17772.1| Flagellar biosynthetic protein FliP [Bacillus cereus 95/8201]
 gi|228674232|gb|EEL29477.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock1-15]
 gi|228692671|gb|EEL46397.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock3-42]
 gi|228704362|gb|EEL56796.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock4-2]
 gi|228713804|gb|EEL65689.1| Flagellar biosynthetic protein FliP [Bacillus cereus F65185]
 gi|228725744|gb|EEL76992.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH676]
 gi|228731905|gb|EEL82804.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH1271]
 gi|228774801|gb|EEM23197.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228781386|gb|EEM29587.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis Bt407]
 gi|228787850|gb|EEM35808.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228795000|gb|EEM42499.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228801564|gb|EEM48446.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228807503|gb|EEM54030.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228814341|gb|EEM60607.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228820728|gb|EEM66753.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228826651|gb|EEM72422.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228832915|gb|EEM78484.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228839106|gb|EEM84402.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228845338|gb|EEM90374.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228852260|gb|EEM97056.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis IBL
           200]
 gi|228859235|gb|EEN03666.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis IBL
           4222]
          Length = 177

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 107/180 (59%), Gaps = 6/180 (3%)

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
           +IV  I R G+G+ ++PPN V++ LALF++ + M P L +       P+   +IT + A 
Sbjct: 1   MIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKITVSQAA 60

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMISELRRS 184
           +  A     +M  +T + DL + + +     R  ++ K+   +    L+PSF ++++++ 
Sbjct: 61  ETTAPIMKEYMSKHTYKHDLKMMLKV-----RGEELPKDLKDLSLFTLVPSFTLTQIQKG 115

Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
              G  I L F+ ID+I++T++M +GMMM+PP  +SLPFK++ FV + G++ +V+ + K+
Sbjct: 116 LLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIVDIMFKT 175


>gi|83716894|ref|YP_438369.1| flagellar biosynthesis protein FliP [Burkholderia thailandensis
           E264]
 gi|167614815|ref|ZP_02383450.1| flagellar biosynthesis protein FliP [Burkholderia thailandensis
           Bt4]
 gi|257141400|ref|ZP_05589662.1| flagellar biosynthesis protein FliP [Burkholderia thailandensis
           E264]
 gi|83650719|gb|ABC34783.1| flagellar biosynthetic protein fliP [Burkholderia thailandensis
           E264]
          Length = 255

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/220 (38%), Positives = 125/220 (56%), Gaps = 7/220 (3%)

Query: 25  DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
           + + +  D S+ T I+      T+L + P L I++T F RF IV ++LR  +G+    P 
Sbjct: 39  ESLGLRGDYSVKTQILLFM---TLLGLLPALAIVMTSFLRFAIVLALLRQALGLQQGLPA 95

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
            VI ++AL +T  VM P         I+P   ++IT   AI R  +P   FM   T +  
Sbjct: 96  RVITAVALLLTLLVMRPVGLDVWRHAIEPYDRDEITFREAIARAEKPLSRFMLAQTSKAS 155

Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
           L     +  S  R  D+ K +   + +   +FM+SEL+ +F+IG ++ LPFLIID++VA+
Sbjct: 156 LEQISRL--SGER--DVAKPEDHAFVVKAAAFMMSELKTAFQIGAMLFLPFLIIDLVVAS 211

Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
            +MAMGMMML P  ISLP K++ FVL+DGW+L V  L  S
Sbjct: 212 TLMAMGMMMLSPLVISLPLKLLLFVLVDGWTLTVNTLTTS 251


>gi|167576640|ref|ZP_02369514.1| flagellar biosynthesis protein FliP [Burkholderia thailandensis
           TXDOH]
          Length = 255

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/192 (40%), Positives = 113/192 (58%), Gaps = 4/192 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P L I++T F RF IV ++LR  +G+    P  VI ++AL +T  VM P         I+
Sbjct: 64  PALAIVMTSFLRFAIVLALLRQALGLQQGLPARVITAVALLLTLLVMRPVGLDVWRHAIE 123

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P   ++IT   AI R  +P   FM   T +  L+    +  S  R  D+ K +   + + 
Sbjct: 124 PYDRDEITFREAIARAEKPISRFMLAQTSKASLAQISRL--SGER--DVAKPEDHAFVVK 179

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
             +FM+SEL+ +F+IG ++ LPFLIID++VA+ +MAMGMMML P  ISLP K++ FVL+D
Sbjct: 180 AAAFMMSELKTAFQIGAMLFLPFLIIDLVVASTLMAMGMMMLSPLVISLPLKLLLFVLVD 239

Query: 233 GWSLLVENLVKS 244
           GW+L V  L  S
Sbjct: 240 GWTLTVNTLTTS 251


>gi|229058415|ref|ZP_04196799.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH603]
 gi|229132594|ref|ZP_04261442.1| Flagellar biosynthetic protein FliP [Bacillus cereus BDRD-ST196]
 gi|229166621|ref|ZP_04294373.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH621]
 gi|228616875|gb|EEK73948.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH621]
 gi|228650826|gb|EEL06813.1| Flagellar biosynthetic protein FliP [Bacillus cereus BDRD-ST196]
 gi|228719924|gb|EEL71514.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH603]
          Length = 177

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 107/180 (59%), Gaps = 6/180 (3%)

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
           +IV  I R G+G+ ++PPN V++ LALF++ + M P L +       P+   +IT + A 
Sbjct: 1   MIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKITVSQAA 60

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMISELRRS 184
           +  A     +M  +T + DL + + +     R  ++ K+   +    L+PSF ++++++ 
Sbjct: 61  ETTAPIMKDYMSKHTYKHDLKMMLKV-----RGEELPKDLKDLSLFTLVPSFTLTQIQKG 115

Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
              G  I L F+ ID+I++T++M +GMMM+PP  +SLPFK++ FV + G++ +V+ + K+
Sbjct: 116 LLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIVDIMFKT 175


>gi|229017052|ref|ZP_04173971.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH1273]
 gi|229023233|ref|ZP_04179743.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH1272]
 gi|228738027|gb|EEL88513.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH1272]
 gi|228744225|gb|EEL94308.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH1273]
          Length = 177

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 107/180 (59%), Gaps = 6/180 (3%)

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
           +IV  I R G+G+ ++PPN V++ LALF++ + M P L +       P+   +IT + A 
Sbjct: 1   MIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKITVSQAA 60

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMISELRRS 184
           +  A     +M  +T + DL + + +     R  ++ K+   +    L+PSF ++++++ 
Sbjct: 61  ETTAPIMKDYMSKHTYKHDLKMMLKV-----RGEELPKDLKDLSLFTLVPSFTLTQIQKG 115

Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
              G  I L F+ ID+I++T++M +GMMM+PP  +SLPFK++ FV + G++ +V+ + K+
Sbjct: 116 LLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIVDIMFKT 175


>gi|284007673|emb|CBA73393.1| type III secretion sytem SpaP,YscR,HrcR,EscR [Arsenophonus
           nasoniae]
          Length = 226

 Score =  107 bits (267), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 119/210 (56%), Gaps = 8/210 (3%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           + +I ++ P L+   TC+ +F IVF ++R  +G+  VP N+V+ ++AL ++ ++M+P   
Sbjct: 11  LLSIATLLPFLIAAGTCYLKFSIVFVMVRNAIGVQQVPSNMVLNAIALILSLFIMAPLAK 70

Query: 105 RSIEMGIQPLMNNQITETTAI---QRVAEPFWVFMRNNTREKDLSL--FMDMAHSSHRNT 159
                 +     N    T  I   Q + E    + +   +  D  L  F   A       
Sbjct: 71  NFYLYSVNYQTENPHGFTDPILLDQFLDESLQDYRQYLHKYADPELVNFFVAAQERVPQP 130

Query: 160 DITKNDHIEYRILIP---SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
           +   ++ +E   LIP   ++ +SE++ +F IGF + LPF++ID++V++I++A+GMMM+ P
Sbjct: 131 ENQIDNSMENGSLIPLLAAYALSEIKSAFIIGFYLYLPFVVIDLVVSSILLALGMMMMSP 190

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
            ++S+P K++ FV +DGWSLL + L+  ++
Sbjct: 191 ITLSVPIKLVLFVAMDGWSLLSKGLISQYL 220


>gi|229144379|ref|ZP_04272784.1| Flagellar biosynthetic protein FliP [Bacillus cereus BDRD-ST24]
 gi|228639010|gb|EEK95435.1| Flagellar biosynthetic protein FliP [Bacillus cereus BDRD-ST24]
          Length = 177

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 106/180 (58%), Gaps = 6/180 (3%)

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
           +IV  I R G+G+ ++PPN V++ LALF++ + M P L +       P+   +IT + A 
Sbjct: 1   MIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKITVSQAA 60

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMISELRRS 184
           +  A     +M  +T + DL + + +     R   + K+   +    L+PSF ++++++ 
Sbjct: 61  ETTAPIMKEYMSKHTYKHDLKMMLKV-----RGEQLPKDLKDLSLFTLVPSFTLTQIQKG 115

Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
              G  I L F+ ID+I++T++M +GMMM+PP  +SLPFK++ FV + G++ +V+ + K+
Sbjct: 116 LLTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIVDIMFKT 175


>gi|312958828|ref|ZP_07773347.1| type III secretion system rscR [Pseudomonas fluorescens WH6]
 gi|311286598|gb|EFQ65160.1| type III secretion system rscR [Pseudomonas fluorescens WH6]
          Length = 216

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/204 (35%), Positives = 123/204 (60%), Gaps = 10/204 (4%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT---LDR 105
           LS+ P+LLI+ T F + +IV  I R  +G+  VPP++ I  +AL  T ++M+P    +  
Sbjct: 17  LSLMPMLLIICTSFLKIVIVLMITRNAIGVQQVPPSMAINGIALAATLFIMAPVGYEIAE 76

Query: 106 SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDIT 162
           SI++    L N Q    T  + +  P   FM  N     L+  ++       +    ++ 
Sbjct: 77  SIKVSPLDLSNVQTVLQTGGEAIM-PLRAFMLRNVDPDVLTHLLENTARLWPAQMAEEVQ 135

Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
           + D I   +LIP+F++S+L+  FEIGFLI +PF++ID+IV+ +++A+GM M+ P +ISLP
Sbjct: 136 REDLI---LLIPAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTISLP 192

Query: 223 FKVIFFVLIDGWSLLVENLVKSFI 246
            K++ FVL+ GWS L+++L  S++
Sbjct: 193 LKLLLFVLVSGWSRLLDSLFLSYL 216


>gi|62085087|gb|AAX62950.1| putative type III secretion apparatus integral membrane protein
           component [Escherichia coli]
          Length = 220

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 120/207 (57%), Gaps = 7/207 (3%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            I ++ ++ P ++   T F +F IVF I+R  +G+  VP N+ +  +AL ++ +VM P +
Sbjct: 9   AILSLFTLLPFIIASGTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSMFVMMP-V 67

Query: 104 DRSIEMGIQP---LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF--MDMAHSSHRN 158
            + I    Q      NN  +    ++     +  ++   +  + ++ F  +   +SS  N
Sbjct: 68  GKEIYYNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVNFFEKIQKVNSSEDN 127

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
            +I  +D+I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMMM  P +
Sbjct: 128 EEIFDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMMM-SPVT 186

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IS P K+I FV +DGW++L + L+  +
Sbjct: 187 ISTPIKLILFVAMDGWTMLSKGLILQY 213


>gi|212711701|ref|ZP_03319829.1| hypothetical protein PROVALCAL_02776 [Providencia alcalifaciens DSM
           30120]
 gi|212685803|gb|EEB45331.1| hypothetical protein PROVALCAL_02776 [Providencia alcalifaciens DSM
           30120]
          Length = 221

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 116/214 (54%), Gaps = 20/214 (9%)

Query: 43  FGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT 102
             I  + ++ P ++   TC+ +  IV  ++R  MG+  VP  + +  +AL ++ +VM P 
Sbjct: 11  LAIIALSTLLPFIIAAGTCYLKISIVLIMVRNAMGVQQVPSTMALNGIALLLSIFVMMPV 70

Query: 103 LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN--------TREKDLSLFMDMAHS 154
           L       +   M ++  + + ++ V      F+ N          +  D  L       
Sbjct: 71  LQD-----VNQYMRHESVDFSNVESVDN----FVDNGLGRYKSYLMKYSDPQLVTFFESV 121

Query: 155 SHRNTDIT-KNDHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
               T+I  + +  E  +  L+P++ +SE++ +FEIGF I LPF++ID+++++I++A+GM
Sbjct: 122 QQGKTEIEVQEEQAEPTLFSLLPAYALSEIKSAFEIGFYIYLPFVVIDLVISSILLALGM 181

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MM+ P +IS+P K+I FV IDGWSL+ + LV  +
Sbjct: 182 MMMSPVTISVPVKLILFVAIDGWSLISKGLVMQY 215


>gi|51103054|gb|AAT96200.1| HrcR [Pseudomonas viridiflava]
          Length = 217

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/212 (34%), Positives = 121/212 (57%), Gaps = 26/212 (12%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL----- 103
           LS+ P LLI+ T F +  +   I R  +G+  VPPN+ +  +AL  T +VM+P       
Sbjct: 18  LSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVAHDIQQ 77

Query: 104 ---DRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR--- 157
              D  +E+G    +        +++ V EP   FM   TR  D  +   +  ++ R   
Sbjct: 78  RVHDHPLELGSADKLQ------ASLRTVIEPLQRFM---TRNTDPDVVAHLLENTQRMWP 128

Query: 158 ---NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
                  TK+D +   + IP+F++SEL+  FEIGFLI +PF++ID+IV+ +++A+GM M+
Sbjct: 129 KEMADQATKDDLL---LAIPAFVMSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMV 185

Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
            P +ISLP K++ FVL+ GWS L+++L  S++
Sbjct: 186 SPMTISLPLKLLLFVLVSGWSRLLDSLFYSYM 217


>gi|289677999|ref|ZP_06498889.1| type III secretion system protein [Pseudomonas syringae pv.
           syringae FF5]
 gi|330901781|gb|EGH33200.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 217

 Score =  106 bits (264), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 123/206 (59%), Gaps = 14/206 (6%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSI 107
           LS+ P LLI+ T F +  +   I R  +G+  VPPN+ +  +AL  T +VM+P   D   
Sbjct: 18  LSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVAHDIQQ 77

Query: 108 EMGIQPL-MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR------NTD 160
            +   PL ++N     ++++ V EP   FM   TR  D  +   +  ++ R         
Sbjct: 78  RVHEHPLELSNADKLQSSLKVVIEPLQRFM---TRNTDPDVVAHLLENTQRMWPKEMADQ 134

Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
            +KND +   + IP+F++SEL+  FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++S
Sbjct: 135 ASKNDLL---LAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTLS 191

Query: 221 LPFKVIFFVLIDGWSLLVENLVKSFI 246
           LP K++ FVL+ GWS L+++L  S++
Sbjct: 192 LPLKLLLFVLVSGWSRLLDSLFYSYM 217


>gi|2494569|sp|Q60236|HRPW_PSESY RecName: Full=Harpin secretion protein hrpW
 gi|818891|gb|AAB05075.1| HrpW [Pseudomonas syringae pv. syringae]
 gi|148562540|gb|ABQ88359.1| HrcR [Pseudomonas syringae pv. syringae]
          Length = 208

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 122/206 (59%), Gaps = 14/206 (6%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSI 107
           LS+ P LLI+ T F +  +   I R  +G+  VPPN+ +  +AL  T +VM+P   D   
Sbjct: 9   LSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVAHDIQQ 68

Query: 108 EMGIQPL-MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR------NTD 160
            +   PL ++N     ++++ V EP   FM   TR  D  +   +  ++ R         
Sbjct: 69  RVHEHPLELSNADKLQSSLKVVIEPLQRFM---TRNTDPDVVAHLLENTQRMWPKEMADQ 125

Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
             KND +   + IP+F++SEL+  FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++S
Sbjct: 126 ANKNDLL---LAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTLS 182

Query: 221 LPFKVIFFVLIDGWSLLVENLVKSFI 246
           LP K++ FVL+ GWS L+++L  S++
Sbjct: 183 LPLKLLLFVLVSGWSRLLDSLFYSYM 208


>gi|330937035|gb|EGH41123.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 217

 Score =  105 bits (263), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 122/206 (59%), Gaps = 14/206 (6%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSI 107
           LS+ P LLI+ T F +  +   I R  +G+  VPPN+ +  +AL  T +VM+P   D   
Sbjct: 18  LSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVAHDIQQ 77

Query: 108 EMGIQPL-MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR------NTD 160
            +   PL ++N     ++++ V EP   FM   TR  D  +   +  ++ R         
Sbjct: 78  RVHEHPLELSNADKLQSSLKVVIEPLQRFM---TRNTDPDVVAHLLENTQRMWPKEMADQ 134

Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
            +KND +   + IP+F++SEL+  FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++S
Sbjct: 135 ASKNDLL---LAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTLS 191

Query: 221 LPFKVIFFVLIDGWSLLVENLVKSFI 246
           LP K++ FVL+ GWS L++ L  S++
Sbjct: 192 LPLKLLLFVLVSGWSRLLDRLFYSYM 217


>gi|330975864|gb|EGH75930.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 217

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 122/206 (59%), Gaps = 14/206 (6%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSI 107
           LS+ P LLI+ T F +  +   I R  +G+  VPPN+ +  +AL  T +VM+P   D   
Sbjct: 18  LSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVAHDIQQ 77

Query: 108 EMGIQPL-MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR------NTD 160
            +   PL ++N     ++++ V EP   FM   TR  D  +   +  ++ R         
Sbjct: 78  RVHEHPLELSNADKLQSSLKVVIEPLQRFM---TRNTDPDVVAHLLENTQRMWPKEMADQ 134

Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
             KND +   + IP+F++SEL+  FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++S
Sbjct: 135 ANKNDLL---LAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTLS 191

Query: 221 LPFKVIFFVLIDGWSLLVENLVKSFI 246
           LP K++ FVL+ GWS L+++L  S++
Sbjct: 192 LPLKLLLFVLVSGWSRLLDSLFYSYM 217


>gi|188534810|ref|YP_001908607.1| surface presentation of antigens protein SpaP [Erwinia tasmaniensis
           Et1/99]
 gi|188029852|emb|CAO97733.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99]
          Length = 223

 Score =  105 bits (262), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 115/208 (55%), Gaps = 13/208 (6%)

Query: 46  FTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDR 105
           FT+L   P L+   TCF +F IV  ++R  +G+  VP  L +  +AL +T +VM P   +
Sbjct: 15  FTLL---PFLIAGGTCFIKFSIVMVMVRNALGIQQVPSTLTLNGIALILTAFVMMPVCQK 71

Query: 106 SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN---NTREKDLSLFMDMAHSSHRNTDIT 162
               G     +     + +I ++ +      R+   +  + +L  F +          I 
Sbjct: 72  V--SGYIESHHIDFNNSASINQLMDQGLGSYRDYLVHYSDHELIRFFNQVQQQKTGETIP 129

Query: 163 KNDHIEYR-----ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
           + +  E R      L+P++ +SE++ +F+I F + +PF++IDM+V++I++A+GMMM+ P 
Sbjct: 130 EVEEHELRSLSLITLMPAYALSEIQSAFKIAFYLYVPFVVIDMVVSSILLALGMMMMSPV 189

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +IS+P K+I FV ++GWSLL + ++  +
Sbjct: 190 TISIPIKLILFVSMNGWSLLTKGMIAQY 217


>gi|179741398|gb|ACB86714.1| HrcR [uncultured soil bacterium]
 gi|179741939|gb|ACB86730.1| HrcR [uncultured soil bacterium]
          Length = 159

 Score =  105 bits (262), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 95/160 (59%), Gaps = 10/160 (6%)

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEM--GIQPLMN-----NQITETTAIQRV 128
           +G+  VPPN+V+  LAL +T YVM P   R  +   G   L         + ET  + + 
Sbjct: 3   IGVQQVPPNIVLNGLALVLTLYVMQPVGARMADAVGGANGLAGVTSSTGNMMETANLAK- 61

Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188
            EP   F+  ++R  + + F+  A        +  +D  ++ I +P+F+++EL  +F+IG
Sbjct: 62  -EPLREFLLKHSRPNERAFFLRTAQRVDPARSVEMSDR-DFVITVPAFVVNELSVAFQIG 119

Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
           FLI LPFL+ID++++ I++AMGMMML PT+ISLP K++ F
Sbjct: 120 FLIFLPFLVIDLVISNILLAMGMMMLSPTTISLPLKLLLF 159


>gi|251789493|ref|YP_003004214.1| type III secretion system protein [Dickeya zeae Ech1591]
 gi|247538114|gb|ACT06735.1| Yop virulence translocation R [Dickeya zeae Ech1591]
          Length = 217

 Score =  105 bits (262), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 123/203 (60%), Gaps = 8/203 (3%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSI 107
           LS+ P+ +I+ TCF +  +V  I R  +G+  VPPN+ +  +AL  T +VM+P   D   
Sbjct: 18  LSLIPLSMIVCTCFLKISMVLMITRNAIGVQQVPPNMALYGIALAATVFVMAPVFSDIKQ 77

Query: 108 EMGIQPL-MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
                P+  +N     +++ R  EP   FM  NT   D  +   +  +S R      ++ 
Sbjct: 78  RFQDAPVDFSNLDALESSVTRGIEPLQKFMSRNT---DPDILTHLHENSLRMWPAAMSEK 134

Query: 167 IEYR---ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
           I  +   +++P++++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ PT++SLP 
Sbjct: 135 ITTQSILLIVPAYVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPTTLSLPL 194

Query: 224 KVIFFVLIDGWSLLVENLVKSFI 246
           K++ FVL++GW+ L++ L  S++
Sbjct: 195 KLLLFVLVNGWTRLLDGLFYSYL 217


>gi|238577787|gb|ACR46698.1| HrcR [Pseudomonas syringae pv. tabaci]
          Length = 208

 Score =  105 bits (261), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 122/206 (59%), Gaps = 14/206 (6%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSI 107
           LS+ P LLI+ T F +  +   I R  +G+  VPPN+ +  +AL  T +VM+P   D   
Sbjct: 9   LSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVAHDIQQ 68

Query: 108 EMGIQPL-MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR------NTD 160
            +   PL M++     ++++ V EP   FM   TR  D  +   +  ++ R         
Sbjct: 69  RVHDHPLEMSSADKLQSSLKLVIEPLQRFM---TRNTDPDVVAHLLENTQRMWPKEMADQ 125

Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
             KND +   + IP+F++SEL+  FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++S
Sbjct: 126 ANKNDLL---LAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTLS 182

Query: 221 LPFKVIFFVLIDGWSLLVENLVKSFI 246
           LP K++ FVL+ GWS L+++L  S++
Sbjct: 183 LPLKLLLFVLVSGWSRLLDSLFYSYM 208


>gi|257487234|ref|ZP_05641275.1| type III secretion system protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|330894462|gb|EGH27123.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           mori str. 301020]
 gi|330984964|gb|EGH83067.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331009152|gb|EGH89208.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 217

 Score =  105 bits (261), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 122/206 (59%), Gaps = 14/206 (6%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSI 107
           LS+ P LLI+ T F +  +   I R  +G+  VPPN+ +  +AL  T +VM+P   D   
Sbjct: 18  LSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVAHDIQQ 77

Query: 108 EMGIQPL-MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR------NTD 160
            +   PL M++     ++++ V EP   FM   TR  D  +   +  ++ R         
Sbjct: 78  RVHDHPLEMSSADKLQSSLKLVIEPLQRFM---TRNTDPDVVAHLLENTQRMWPKEMADQ 134

Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
             KND +   + IP+F++SEL+  FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++S
Sbjct: 135 ANKNDLL---LAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTLS 191

Query: 221 LPFKVIFFVLIDGWSLLVENLVKSFI 246
           LP K++ FVL+ GWS L+++L  S++
Sbjct: 192 LPLKLLLFVLVSGWSRLLDSLFYSYM 217


>gi|254255042|ref|ZP_04948359.1| Flagellar transport protein FliP [Burkholderia dolosa AUO158]
 gi|124899687|gb|EAY71530.1| Flagellar transport protein FliP [Burkholderia dolosa AUO158]
          Length = 250

 Score =  104 bits (260), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 82/236 (34%), Positives = 130/236 (55%), Gaps = 10/236 (4%)

Query: 12  VTPELVFAKSSLHDVMNIPAD---LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIV 68
            +  LV A  +L D + I +    LSI T I+      T+L + P LL+ +T F R++IV
Sbjct: 18  ASAALVCAGPALADTLTISSGGDGLSIKTQILVLM---TLLGLLPALLMTMTSFLRYVIV 74

Query: 69  FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128
            S+L+  +G+    P  VI  +AL +T   M P  +   E    P    +I    A++  
Sbjct: 75  LSLLKQALGLQQGLPARVITGVALVLTLLTMRPVGEAIWEKAYVPYEQEKIGLRQALKAA 134

Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188
             P   FM   T +  L+    ++ +      I +     + + + +F++SEL+ +F+IG
Sbjct: 135 DAPLSQFMLAQTSKATLAQIAKLSGTEA----IKEPTQQPFLVKLSAFVLSELKTAFQIG 190

Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
            ++ +PFL+ID+IVA+++MAMGMMML P  ISLP K++ FVL+DGWSL V  L+ S
Sbjct: 191 AMLFIPFLVIDIIVASVLMAMGMMMLSPLVISLPLKLLLFVLVDGWSLTVSTLLTS 246


>gi|330957488|gb|EGH57748.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 217

 Score =  104 bits (260), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 122/206 (59%), Gaps = 14/206 (6%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSI 107
           LS+ P LLI+ T F +  +   I R  +G+  VPPN+ +  +AL  T +VM+P   D   
Sbjct: 18  LSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVAHDIQQ 77

Query: 108 EMGIQPL-MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR------NTD 160
            +   PL M++     ++++ V EP   FM   TR  D  +   +  ++ R         
Sbjct: 78  RVHDHPLEMSSADKLQSSLKVVIEPLQRFM---TRNTDPDVVAHLLENTQRMWPKEMADQ 134

Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
             KND +   + IP+F++SEL+  FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++S
Sbjct: 135 ANKNDLL---LAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTLS 191

Query: 221 LPFKVIFFVLIDGWSLLVENLVKSFI 246
           LP K++ FVL+ GWS L+++L  S++
Sbjct: 192 LPLKLLLFVLVSGWSRLLDSLFYSYM 217


>gi|296535008|ref|ZP_06897288.1| flagellar biosynthetic protein FliP [Roseomonas cervicalis ATCC
           49957]
 gi|296264663|gb|EFH11008.1| flagellar biosynthetic protein FliP [Roseomonas cervicalis ATCC
           49957]
          Length = 190

 Score =  104 bits (260), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 51/120 (42%), Positives = 80/120 (66%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           S++T IV      T+L++AP +L++ T F R ++V S+LRT +G+   PPN VI+SL+LF
Sbjct: 61  SLTTNIVGLIVATTLLALAPGILVVATAFTRIVVVLSMLRTALGLQQSPPNSVIVSLSLF 120

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           +  +VM+P L+R+     +PL++  ITE  A +R   PF  FM  N RE+DL+LF+++A 
Sbjct: 121 LAAFVMAPVLERAWNDAARPLIDGTITEEMAAERAIAPFRSFMEANVRERDLALFIEIAR 180


>gi|73532640|dbj|BAE19878.1| type III secretion apparatus [Edwardsiella tarda]
          Length = 171

 Score =  104 bits (260), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 101/175 (57%), Gaps = 11/175 (6%)

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE--TTAIQRVAE---- 130
           G    P N+ +  LAL +T ++M+P     +   +Q  + +   E  TT + R+++    
Sbjct: 1   GYSRSPRNIALYGLALILTLFIMTP-----VGTAVQARLADAPAEAQTTLLARLSDNTLD 55

Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
           P+  F+R +T    L  F  +A  S   +   +       +L+P+F +S+L  +F+IG L
Sbjct: 56  PYRQFLRQHTSATQLHFFRQVATKSWPASVREQISDDSLLLLMPAFAVSQLVEAFQIGLL 115

Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           + LPF+ ID+IV+ I++AMGMMM+ P +IS+PFK++ F+L+ GW  L+  L+ S+
Sbjct: 116 LFLPFIAIDLIVSNILLAMGMMMVSPMTISMPFKLLVFILVGGWDKLLGQLLLSY 170


>gi|66044459|ref|YP_234300.1| type III secretion system protein [Pseudomonas syringae pv.
           syringae B728a]
 gi|63255166|gb|AAY36262.1| type III secretion protein HrcR [Pseudomonas syringae pv. syringae
           B728a]
 gi|330969104|gb|EGH69170.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 217

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/200 (34%), Positives = 118/200 (59%), Gaps = 2/200 (1%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSI 107
           LS+ P LLI+ T F +  +   I R  +G+  VPPN+ +  +AL  T +VM+P   D   
Sbjct: 18  LSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVAHDIQQ 77

Query: 108 EMGIQPL-MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
            +   PL ++N     ++++ V EP   FM  NT    ++  ++            +   
Sbjct: 78  RVHEHPLELSNADKLQSSLKVVIEPLQRFMTRNTDPDVVAHLLENTQRMWPKEMADQASK 137

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
            +  + IP+F++SEL+  FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP K++
Sbjct: 138 DDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTLSLPLKLL 197

Query: 227 FFVLIDGWSLLVENLVKSFI 246
            FVL+ GWS L+++L  S++
Sbjct: 198 LFVLVSGWSRLLDSLFYSYM 217


>gi|28628132|gb|AAO34616.1| HrcR [Erwinia chrysanthemi]
          Length = 217

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 123/203 (60%), Gaps = 8/203 (3%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSI 107
           LS+ P+ +I+ TCF +  +V  + R  +G+  VPPN+ +  +AL  T +VM+P   D   
Sbjct: 18  LSLIPLSMIVCTCFLKISMVLMLTRNAIGVQQVPPNMALYGIALAATVFVMAPVFSDIKQ 77

Query: 108 EMGIQPL-MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
                P+  +N     +++ R  EP   FM  NT   D  +   +  +S R      ++ 
Sbjct: 78  RFQDAPVDFSNLDALESSVTRGIEPLQKFMSRNT---DPDILTHLHENSLRMWPAAMSEK 134

Query: 167 IEYR---ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
           I  +   +++P++++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ PT++SLP 
Sbjct: 135 ITTQSILLIVPAYVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPTTLSLPL 194

Query: 224 KVIFFVLIDGWSLLVENLVKSFI 246
           K++ FVL++GW+ L++ L  S++
Sbjct: 195 KLLLFVLVNGWTRLLDGLFYSYL 217


>gi|307131230|ref|YP_003883246.1| type III secretion inner membrane protein [Dickeya dadantii 3937]
 gi|306528759|gb|ADM98689.1| type III secretion inner membrane protein [Dickeya dadantii 3937]
          Length = 217

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 125/203 (61%), Gaps = 8/203 (3%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSI 107
           LS+ P+++I+ TCF +  +V  I R  +G+  VPPN+ +  +AL  T +VM+P   D   
Sbjct: 18  LSLIPLMMIVCTCFLKVSMVLMITRNAIGVQQVPPNMALYGIALAATLFVMAPVFSDIKQ 77

Query: 108 EMGIQPLMNNQITE-TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
                P+  + +    +++ +  EP   FM  NT   D  +   +  +S R    + ++ 
Sbjct: 78  RFQDAPVDFSSLDALESSVTKGIEPLQKFMSRNT---DPDILTHLHENSLRMWPASMSEK 134

Query: 167 IEYR---ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
           I  +   +++P++++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ PT++SLP 
Sbjct: 135 ITTQNILLVLPAYVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPTTLSLPL 194

Query: 224 KVIFFVLIDGWSLLVENLVKSFI 246
           K++ FVL++GW+ L++ L  S++
Sbjct: 195 KLLLFVLVNGWTRLLDGLFYSYL 217


>gi|271500421|ref|YP_003333446.1| Yop virulence translocation R [Dickeya dadantii Ech586]
 gi|270343976|gb|ACZ76741.1| Yop virulence translocation R [Dickeya dadantii Ech586]
          Length = 217

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 123/203 (60%), Gaps = 8/203 (3%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSI 107
           LS+ P+ +I+ TCF +  +V  + R  +G+  VPPN+ +  +AL  T +VM+P   D  +
Sbjct: 18  LSLIPLAMIVCTCFLKISMVLMLTRNAIGVQQVPPNMALYGVALAATLFVMAPVFSDIKL 77

Query: 108 EMGIQPLMNNQITE-TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
                P+  + +    +++ R  EP   FM  NT   D  +   +  +S R       + 
Sbjct: 78  RFQDAPVDFSSLDALESSVTRGIEPLQKFMSRNT---DPDILTHLHENSLRMWPAAMTEK 134

Query: 167 IEYR---ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
           I  +   +++P++++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ PT++SLP 
Sbjct: 135 ITTQNILLILPAYVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPTTLSLPL 194

Query: 224 KVIFFVLIDGWSLLVENLVKSFI 246
           K++ FVL++GW+ L++ L  S++
Sbjct: 195 KLLLFVLVNGWTRLLDGLFYSYL 217


>gi|82795278|gb|ABB91647.1| type III secretion protein HrcR [Pseudomonas syringae pv. tagetis]
          Length = 217

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/202 (34%), Positives = 115/202 (56%), Gaps = 14/202 (6%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL--------D 104
           P LLI+ T F +  +   I R  +G+  VPPN+ +  +AL  T +VM+P          D
Sbjct: 22  PFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVAHEMQQRVHD 81

Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
             +E+G     N +  + +A + V EP   FM  NT    ++  +D            + 
Sbjct: 82  HPLELG-----NTEKLQASA-RTVIEPLQRFMTRNTDPDVVAHLLDNTQRMWPKEMADQA 135

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
              +  + IP+F++SEL+  FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP K
Sbjct: 136 SKEDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTLSLPLK 195

Query: 225 VIFFVLIDGWSLLVENLVKSFI 246
           ++ FVL+ GWS L+++L  S++
Sbjct: 196 LLLFVLVSGWSRLLDSLFYSYM 217


>gi|254575132|gb|ACT68033.1| type III secretion apparatus [Pantoea stewartii subsp. stewartii
           DC283]
          Length = 223

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 117/212 (55%), Gaps = 14/212 (6%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            + +  ++ P ++   TCF +F IV  ++R  +G+  VP  L +  +AL ++ +VM P  
Sbjct: 10  ALLSFFTLLPFIIAGGTCFIKFSIVLIMVRNALGIQQVPSTLTLNGVALILSAFVMMPVC 69

Query: 104 DRSIEMGIQPLMNNQI--TETTAIQRVAEPFWVFMRN---NTREKDLSLFMDMAHSSHRN 158
            R  E     + +N I    + ++ ++ E      R+      + DL  F +        
Sbjct: 70  QRISEY----IESNHIDFNNSASVTQLMEQGLGSYRDYLVRYSDHDLIRFFNKVQQRRSG 125

Query: 159 TDITK-NDH----IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
             + +  DH    +    L+P++ +SE++ +F+I F + +PF++IDM+V++I++A+GMMM
Sbjct: 126 EPVPEVEDHELSTLSLITLMPAYALSEIQSAFKIAFYLYVPFVVIDMVVSSILLALGMMM 185

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           + P +IS+P K+I FV ++GW+LL + L+  +
Sbjct: 186 MSPVTISIPIKLILFVSMNGWALLTKGLIAQY 217


>gi|3282781|gb|AAC25069.1| HrcR [Pseudomonas syringae pv. phaseolicola]
 gi|42562002|gb|AAS20444.1| HrcR [Pseudomonas syringae pv. phaseolicola]
 gi|71555436|gb|AAZ34647.1| type III secretion component protein HrcR [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 208

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/207 (35%), Positives = 123/207 (59%), Gaps = 16/207 (7%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108
           LS+ P LLI+ T F +  +   I R  +G+  VPPN+ +  +AL  T +VM+P +   I+
Sbjct: 9   LSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAP-VAHEIQ 67

Query: 109 MGIQ--PL-MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR------NT 159
             +   PL + +     ++++ V EP   FM   TR  D  +   +  ++ R        
Sbjct: 68  QRVHEHPLELGSADKLQSSLKTVIEPLQRFM---TRNTDPDVVAHLLENTQRMWPKEMAD 124

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
              KND +   + IP+F++SEL+  FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++
Sbjct: 125 QANKNDLL---LAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTL 181

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
           SLP K++ FVL+ GWS L+++L  S++
Sbjct: 182 SLPLKLLLFVLVSGWSRLLDSLFYSYM 208


>gi|161611342|ref|YP_273544.2| type III secretion system protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 215

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/207 (35%), Positives = 123/207 (59%), Gaps = 16/207 (7%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108
           LS+ P LLI+ T F +  +   I R  +G+  VPPN+ +  +AL  T +VM+P +   I+
Sbjct: 16  LSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAP-VAHEIQ 74

Query: 109 MGIQ--PL-MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR------NT 159
             +   PL + +     ++++ V EP   FM   TR  D  +   +  ++ R        
Sbjct: 75  QRVHEHPLELGSADKLQSSLKTVIEPLQRFM---TRNTDPDVVAHLLENTQRMWPKEMAD 131

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
              KND +   + IP+F++SEL+  FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++
Sbjct: 132 QANKNDLL---LAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTL 188

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
           SLP K++ FVL+ GWS L+++L  S++
Sbjct: 189 SLPLKLLLFVLVSGWSRLLDSLFYSYM 215


>gi|284007398|emb|CBA72807.1| type III secretion system protein Spap [Arsenophonus nasoniae]
          Length = 220

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 118/200 (59%), Gaps = 8/200 (4%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P ++   TC+ +F IVF + R  +G+  +P N+V+  +AL ++F+V+ P +  S +   +
Sbjct: 18  PFIIATGTCYIKFSIVFIMARNALGLQQIPSNMVLNGIALMLSFFVLLPIVKTSYQEFNK 77

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRN---NTREKDLSLFMDMAH--SSHRNTDITKNDHI 167
             +N    +  +I           +N      +KDL  F D  H  S   N +  +N + 
Sbjct: 78  --VNIDYKDIDSIINSVNSGLSGYKNYLIKYSDKDLVSFFDKLHQKSDDGNDNQYENGND 135

Query: 168 EYRI-LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
              + L+P++ +SE++ +F IGF + LPF++ID+++++I++++GMMM+ P +IS+P K+I
Sbjct: 136 SSIVSLLPAYALSEIKNAFTIGFYLYLPFVVIDLLISSILLSLGMMMMSPVTISVPIKLI 195

Query: 227 FFVLIDGWSLLVENLVKSFI 246
            F+ +DGWSLL + L+  +I
Sbjct: 196 LFICLDGWSLLSKGLITQYI 215


>gi|179741982|gb|ACB86732.1| HrcR [uncultured soil bacterium]
          Length = 159

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 95/160 (59%), Gaps = 10/160 (6%)

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEM--GIQPLMN-----NQITETTAIQRV 128
           +G+  VPPN+V+  LAL +T YVM P   R  +   G   L         + ET  + + 
Sbjct: 1   IGVQQVPPNIVLNGLALVLTLYVMQPVGARMADAVGGANGLAGVTSSTGNMMETANLAK- 59

Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188
            EP   F+  +++  + + F+  A        +  +D  ++ I +P+F+++EL  +F+IG
Sbjct: 60  -EPLREFLLKHSQPNERAFFLRTAQRVDPARSVEMSDR-DFVITVPAFVVNELSVAFQIG 117

Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
           FLI LPFL+ID++++ I++AMGMMML PT+ISLP K++ F
Sbjct: 118 FLIFLPFLVIDLVISNILLAMGMMMLSPTTISLPLKLLLF 157


>gi|289623683|ref|ZP_06456637.1| type III secretion system protein [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289647643|ref|ZP_06478986.1| type III secretion system protein [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|298485949|ref|ZP_07004024.1| type III secretion system inner membrane protein [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298159535|gb|EFI00581.1| type III secretion system inner membrane protein [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|320322955|gb|EFW79045.1| type III secretion system protein [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329922|gb|EFW85910.1| type III secretion system protein [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330871287|gb|EGH05996.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330874622|gb|EGH08771.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 217

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/207 (35%), Positives = 123/207 (59%), Gaps = 16/207 (7%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108
           LS+ P LLI+ T F +  +   I R  +G+  VPPN+ +  +AL  T +VM+P +   I+
Sbjct: 18  LSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAP-VAHEIQ 76

Query: 109 MGIQ--PL-MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR------NT 159
             +   PL + +     ++++ V EP   FM   TR  D  +   +  ++ R        
Sbjct: 77  QRVHEHPLELGSADKLQSSLKTVIEPLQRFM---TRNTDPDVVAHLLENTQRMWPKEMAD 133

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
              KND +   + IP+F++SEL+  FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++
Sbjct: 134 QANKNDLL---LAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTL 190

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
           SLP K++ FVL+ GWS L+++L  S++
Sbjct: 191 SLPLKLLLFVLVSGWSRLLDSLFYSYM 217


>gi|170737012|ref|YP_001778272.1| flagellar biosynthetic protein FliP [Burkholderia cenocepacia
           MC0-3]
 gi|169819200|gb|ACA93782.1| flagellar biosynthetic protein FliP [Burkholderia cenocepacia
           MC0-3]
          Length = 248

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 107/185 (57%), Gaps = 4/185 (2%)

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R++IV S+++  +G+    P  ++  +AL +T   M P  +   +    P    +I
Sbjct: 64  TSFLRYVIVLSLVKQALGLQQGLPGRIVTGVALVLTMLTMRPVGEEIWQKAFVPYDQGKI 123

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           +  TA+    +P   +M   T +  L+    ++ +      +   +   + + + +F++S
Sbjct: 124 SMQTALATSEQPLGRYMLAQTNKATLAQMAKLSGTEK----VMDPEKQPFLVKLSAFVLS 179

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+ +F++G ++ +PFLI+D+IVA+++MAMGMMML P  ISLP K++ FVL+DGWSL V 
Sbjct: 180 ELKTAFQMGAMLFIPFLIVDIIVASVLMAMGMMMLSPLVISLPLKLLLFVLVDGWSLTVN 239

Query: 240 NLVKS 244
            LV S
Sbjct: 240 TLVTS 244


>gi|292487271|ref|YP_003530143.1| surface presentation of antigens protein SpaP [Erwinia amylovora
           CFBP1430]
 gi|292900357|ref|YP_003539726.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291200205|emb|CBJ47333.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291552690|emb|CBA19735.1| Surface presentation of antigens protein SpaP [Erwinia amylovora
           CFBP1430]
 gi|312171379|emb|CBX79638.1| Surface presentation of antigens protein SpaP [Erwinia amylovora
           ATCC BAA-2158]
          Length = 223

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 113/206 (54%), Gaps = 9/206 (4%)

Query: 46  FTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDR 105
           FT+L   P ++   TCF +F IV  ++R  +G+  VP  L +  +AL MT +VM P   +
Sbjct: 15  FTLL---PFIIAGGTCFIKFSIVMVMVRNALGIQQVPSTLTLNGIALIMTAFVMMPICQK 71

Query: 106 --SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163
             S         NN  + T  + +    +  ++   +  + +  F  +       +    
Sbjct: 72  ISSYVETNHIDFNNSASVTQLMDQGLGGYRDYLVRYSDHELIRYFNKIQQQQAGESAPEV 131

Query: 164 NDH----IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +H    +    L+P++ +SE++ +F+I F + +PF++ID++V++I++A+GMMM+ P +I
Sbjct: 132 EEHQLSSLSLMTLMPAYALSEIQSAFKIAFYLYVPFVVIDLVVSSILLALGMMMMSPVTI 191

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           S+P K+I FV ++GWSLL + ++  +
Sbjct: 192 SIPIKLILFVAMNGWSLLTKGMIAQY 217


>gi|237800001|ref|ZP_04588462.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022856|gb|EGI02913.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 217

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 117/201 (58%), Gaps = 4/201 (1%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP---TLDR 105
           +S+ P LLI+ T F +  +   I R  +G+  VPPN+ +  +AL  T +VM+P    + +
Sbjct: 18  MSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVAHEMQQ 77

Query: 106 SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165
            +      L N +  + +A + V EP   FM  NT    ++  ++            +  
Sbjct: 78  RVHEHPLELGNTEKLQASA-RTVIEPLQRFMTRNTDPDVVAHLLENTQRMWPKEMADQAS 136

Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225
             +  + IP+F++SEL+  FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP K+
Sbjct: 137 KEDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTLSLPLKL 196

Query: 226 IFFVLIDGWSLLVENLVKSFI 246
           + FVL+ GWS L+++L  S++
Sbjct: 197 LLFVLVSGWSRLLDSLFYSYM 217


>gi|238898597|ref|YP_002924278.1| type III surface presentation of antigens protein [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|75906094|gb|ABA29437.1| putative type III secretion system protein [Candidatus Hamiltonella
           defensa]
 gi|229466356|gb|ACQ68130.1| type III surface presentation of antigens protein [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 221

 Score =  102 bits (254), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 119/198 (60%), Gaps = 5/198 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P ++   TC+ +F IVF ++R  +G+  +P N+ +  +AL +  +VM P + ++I  G +
Sbjct: 18  PFVIASGTCYIKFSIVFVMVRNALGLQQIPSNMTLNGVALLLASFVMMPIV-KNIYEGHK 76

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKD--LSLFMDMAHSSHRNTDITKNDHIEYR 170
               +    ++ I+ V      +     +  D  L+ F + A S  +  D    +  +  
Sbjct: 77  NAQFDVRNLSSVIEFVENGLDGYRSYLVKYADPELTQFFEKAASDRKEEDFAGAEEEKPS 136

Query: 171 I--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
           I  L+P++ +SE++ +F+IGF I LPF+++D+++++I++A+GMMM+ P +IS+P K++ F
Sbjct: 137 IFALLPAYALSEIKSAFKIGFYIYLPFVVVDLLISSILLALGMMMMSPVTISVPIKLVLF 196

Query: 229 VLIDGWSLLVENLVKSFI 246
           V++DGW+L+ + ++  ++
Sbjct: 197 VVLDGWTLISKGMILQYM 214


>gi|330950824|gb|EGH51084.1| type III secretion system protein YscR [Pseudomonas syringae Cit 7]
          Length = 218

 Score =  102 bits (254), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/199 (36%), Positives = 117/199 (58%), Gaps = 14/199 (7%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSI 107
           LS+ P LLI+ T F +  +   I R  +G+  VPPN+ +  +AL  T +VM+P   D   
Sbjct: 18  LSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVAHDIQQ 77

Query: 108 EMGIQPL-MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR------NTD 160
            +   PL ++N     ++++ V EP   FM   TR  D  +   +  ++ R         
Sbjct: 78  RVHEHPLELSNADKLQSSLKVVIEPLQRFM---TRNTDPDVVAHLLENTQRMWPKEMADQ 134

Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
             KND +   + IP+F++SEL+  FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++S
Sbjct: 135 ANKNDLL---LAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTLS 191

Query: 221 LPFKVIFFVLIDGWSLLVE 239
           LP K++ FVL+ GWS L++
Sbjct: 192 LPLKLLLFVLVSGWSRLLD 210


>gi|170690582|ref|ZP_02881749.1| Yop virulence translocation R [Burkholderia graminis C4D1M]
 gi|170145017|gb|EDT13178.1| Yop virulence translocation R [Burkholderia graminis C4D1M]
          Length = 164

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 101/166 (60%), Gaps = 8/166 (4%)

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTRE 142
           +V+  +A+ ++ YVM+P    +++      +  Q T+          EPF  F++ +T E
Sbjct: 1   MVLNGVAILVSLYVMAPGRHAAMQSMQGQTIAGQPTQALIQVFSAAREPFRTFLQKHTNE 60

Query: 143 KDLSLFMDMAH---SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
           ++   F+  A+        + + +ND I   +L P+F ++EL  +F+IGFL+ + F++ID
Sbjct: 61  REKRFFIRSANVVWPKDAASSLHENDLI---VLAPAFTLTELTDAFKIGFLLYIAFIVID 117

Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +I+A +++AMG+  + PT++++PFK++ FV++DGWS L+  LV ++
Sbjct: 118 LIIANVLLAMGLNQVTPTNVAIPFKLLLFVVMDGWSTLIHGLVMTY 163


>gi|213613057|ref|ZP_03370883.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 158

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 94/161 (58%), Gaps = 11/161 (6%)

Query: 91  ALFMTFYVMSPTL----DR--SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
           AL ++ ++M PTL    +R   +++   P   ++        +   P+  F++ N+ EK+
Sbjct: 2   ALVLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDS-----KALAPYRQFLQKNSEEKE 56

Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
            + F ++   +       K       ILIP+F +S+L ++F IG LI LPFL ID++++ 
Sbjct: 57  ANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISN 116

Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           I++AMGMMM+ P +ISLPFK++ F+L  GW L +  LV+SF
Sbjct: 117 ILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF 157


>gi|333008529|gb|EGK27998.1| putative type III secretion apparatus integral membrane protein
           component [Shigella flexneri K-218]
 gi|333017443|gb|EGK36759.1| surface presentation of antigens protein spaP [Shigella flexneri
           K-227]
 gi|333020359|gb|EGK39623.1| putative type III secretion apparatus integral membrane protein
           component [Shigella flexneri K-304]
          Length = 167

 Score = 99.8 bits (247), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 100/166 (60%), Gaps = 15/166 (9%)

Query: 89  SLALFMTFYVMSPTLDRSIEMGIQPLMN--NQITETTAIQRVAE----PFWVFMRNNTRE 142
            +AL M  +VM P     IE G +  +N   +    + I R ++     +  +++ +T  
Sbjct: 5   GIALIMALFVMKPI----IEAGYENYLNGPQKFDTISDIVRFSDSGLMEYKQYLKKHT-- 58

Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDM 200
            DL L      S   N D+   ++ +Y +  L+P++ +SE++ +F+IGF + LPF+++D+
Sbjct: 59  -DLELARFFQRSEEENADLKSAENNDYSLFSLLPAYALSEIKDAFKIGFYLYLPFVVVDL 117

Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           ++++I++A+GMMM+ P +IS+P K++ FV +DGW +L + L++ +I
Sbjct: 118 VISSILLALGMMMMSPITISVPIKLVLFVALDGWGILSKALIEQYI 163


>gi|16761667|ref|NP_457284.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29143151|ref|NP_806493.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213052434|ref|ZP_03345312.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213425708|ref|ZP_03358458.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213580302|ref|ZP_03362128.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213609304|ref|ZP_03369130.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213649910|ref|ZP_03379963.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213853010|ref|ZP_03382542.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|289810466|ref|ZP_06541095.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
 gi|289829392|ref|ZP_06547004.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|2494565|sp|Q56023|SPAP_SALTI RecName: Full=Surface presentation of antigens protein spaP
 gi|25316657|pir||AF0851 secretory protein (associated with virulence) [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|975771|gb|AAC43861.1| SpaP [Salmonella enterica subsp. enterica serovar Typhi]
 gi|16503968|emb|CAD05997.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29138784|gb|AAO70353.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 224

 Score = 98.6 bits (244), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 123/207 (59%), Gaps = 11/207 (5%)

Query: 50  SIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSIE 108
           ++ P ++   TCF +F IVF ++R  +G+  +P N+ + S+AL ++ +VM P + D  + 
Sbjct: 15  TLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNSVALLLSMFVMWPIMHDAYVY 74

Query: 109 MGIQPLMNNQITE-TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR---NTDITKN 164
              + +  N I+  +  +    + +  ++   + +++L  F + A    +    T+  K 
Sbjct: 75  FEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYS-DRELVQFFENAQLKRQYGEETETVKR 133

Query: 165 DHIEYR-----ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           D  E        L+P++ +SE++ +F+IGF + LPF+++D++V+++++A+GMMM+ P +I
Sbjct: 134 DKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALGMMMMSPVTI 193

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
           S P K++ FV +DGW+LL + L+  ++
Sbjct: 194 STPIKLVLFVALDGWTLLSKGLILQYM 220


>gi|12082757|gb|AAG48604.1|AF306650_1 SpaP [Sodalis glossinidius]
          Length = 189

 Score = 98.6 bits (244), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 102/174 (58%), Gaps = 5/174 (2%)

Query: 77  GMGSVPPNLVIISLALFMTFYVMSP-TLDRSIEMGIQPL-MNNQITETTAIQRVAEPFWV 134
           G+  VP NL +  +AL +  ++M P   D       QP+ + +  +    ++   E +  
Sbjct: 4   GLQQVPSNLTLNGIALMLAMFIMGPIAGDAYNAYQEQPVALGSAASVLEFLENSMESYRH 63

Query: 135 FMRNNTREKDLSLFMDMAHSSHRNT-DITKNDHIEYRI-LIPSFMISELRRSFEIGFLII 192
           +++     + L+ F D AH       D   + H    + L+P++ +SE++ SF IGF + 
Sbjct: 64  YLQKYADPR-LTEFFDRAHGGGGAAHDAPASGHAPSMLALLPAYALSEIKDSFRIGFYLY 122

Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           LPF+++D++++++++A+GMMM+ P ++S+P K++ FV++DGW+LL + LV  ++
Sbjct: 123 LPFVVVDLLISSVLLALGMMMMSPITLSVPIKLVLFVMLDGWTLLSQGLVLQYL 176


>gi|56414842|ref|YP_151917.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363770|ref|YP_002143407.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|56129099|gb|AAV78605.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095247|emb|CAR60798.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
          Length = 224

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 122/207 (58%), Gaps = 11/207 (5%)

Query: 50  SIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSIE 108
           ++ P ++   TCF +F IVF ++R  +G+  +P N+ +  +AL ++ +VM P + D  + 
Sbjct: 15  TLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSMFVMWPIMHDAYVY 74

Query: 109 MGIQPLMNNQITE-TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR---NTDITKN 164
              + +  N I+  +  +    + +  ++   + +++L  F + A    +    T+  K 
Sbjct: 75  FEDEDVTFNDISSLSKHVDEGLDGYRDYLSKYS-DRELVQFFENAQLKRQYGEETETVKR 133

Query: 165 DHIEYR-----ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           D  E        L+P++ +SE++ +F+IGF + LPF+++D++V+++++A+GMMM+ P +I
Sbjct: 134 DKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALGMMMMSPVTI 193

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
           S P K++ FV +DGW+LL + L+  ++
Sbjct: 194 STPIKLVLFVALDGWTLLSKGLILQYM 220


>gi|167550261|ref|ZP_02344018.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|168463975|ref|ZP_02697892.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|238909657|ref|ZP_04653494.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|195633254|gb|EDX51668.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|205324695|gb|EDZ12534.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
          Length = 224

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 123/207 (59%), Gaps = 11/207 (5%)

Query: 50  SIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSIE 108
           ++ P ++   TCF +F IVF ++R  +G+  +P N+ +  +AL ++ +VM P + D  + 
Sbjct: 15  TLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSMFVMWPIMHDAYVY 74

Query: 109 MGIQPLMNNQITE-TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR---NTDITKN 164
              + +  N I+  +  +    + +  ++   + +++L  F + A    +   +T+  K 
Sbjct: 75  FEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYS-DRELVQFFENAQLKRQYGEDTETVKR 133

Query: 165 DHIEYR-----ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           D  E        L+P++ +SE++ +F+IGF + LPF+++D++V+++++A+GMMM+ P +I
Sbjct: 134 DKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALGMMMMSPVTI 193

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
           S P K++ FV +DGW+LL + L+  ++
Sbjct: 194 STPIKLVLFVALDGWTLLSKGLILQYM 220


>gi|161502066|ref|YP_001569178.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|973278|gb|AAC43945.1| SpaP [Salmonella enterica]
 gi|973282|gb|AAC43948.1| SpaP [Salmonella enterica]
 gi|160863413|gb|ABX20036.1| hypothetical protein SARI_00083 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 224

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 122/207 (58%), Gaps = 11/207 (5%)

Query: 50  SIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSIE 108
           ++ P ++   TCF +F IVF ++R  +G+  +P N+ +  +AL ++ +VM P + D  + 
Sbjct: 15  TLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGIALLLSMFVMWPIMHDAYVY 74

Query: 109 MGIQPLMNNQITE-TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR---NTDITKN 164
              + +  N I+  +  +    + +  ++   + +++L  F + A    +    T+  K 
Sbjct: 75  FEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYS-DRELVQFFENAQLKRQYGEETEAVKR 133

Query: 165 DHIEYR-----ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           D  E        L+P++ +SE++ +F+IGF + LPF+++D++V+++++A+GMMM+ P +I
Sbjct: 134 DKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALGMMMMSPVTI 193

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
           S P K++ FV +DGW+LL + L+  ++
Sbjct: 194 STPIKLVLFVALDGWTLLSKGLILQYM 220


>gi|16766196|ref|NP_461811.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|62181392|ref|YP_217809.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161615802|ref|YP_001589767.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167993125|ref|ZP_02574220.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168230960|ref|ZP_02656018.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|168235930|ref|ZP_02660988.1| type III secretion apparatus protein, YscR/HrcR family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168242627|ref|ZP_02667559.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168261987|ref|ZP_02683960.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168820413|ref|ZP_02832413.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194445004|ref|YP_002042131.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194448886|ref|YP_002046850.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194468694|ref|ZP_03074678.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194737581|ref|YP_002115842.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197248290|ref|YP_002147787.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197263760|ref|ZP_03163834.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|198245023|ref|YP_002216859.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200387886|ref|ZP_03214498.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204928065|ref|ZP_03219265.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205353833|ref|YP_002227634.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207858152|ref|YP_002244803.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|224584668|ref|YP_002638466.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|730796|sp|P40700|SPAP_SALTY RecName: Full=Surface presentation of antigens protein spaP
 gi|7448018|pir||T11207 spaP protein - Salmonella dublin
 gi|404291|emb|CAA51925.1| surface presentation of antigens [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|973258|gb|AAC43936.1| SpaP [Salmonella enterica subsp. enterica serovar Dublin]
 gi|973262|gb|AAC43966.1| SpaP [Salmonella enterica subsp. enterica serovar Senftenberg]
 gi|973266|gb|AAC43963.1| SpaP [Salmonella enterica subsp. enterica serovar Gallinarum]
 gi|973270|gb|AAC43939.1| SpaP [Salmonella enterica]
 gi|973274|gb|AAC43942.1| SpaP [Salmonella enterica]
 gi|973286|gb|AAC43951.1| SpaP [Salmonella enterica]
 gi|973290|gb|AAC43954.1| SpaP [Salmonella enterica]
 gi|973294|gb|AAC43957.1| SpaP [Salmonella enterica]
 gi|975763|gb|AAC43852.1| SpaP [Salmonella enterica]
 gi|975767|gb|AAC43858.1| SpaP [Salmonella enterica subsp. enterica serovar Typhisuis]
 gi|975775|gb|AAC43864.1| SpaP [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|975779|gb|AAC43855.1| SpaP [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|16421438|gb|AAL21770.1| surface presentation of antigens [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|62129025|gb|AAX66728.1| surface presentation of antigens; secretory proteins [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161365166|gb|ABX68934.1| hypothetical protein SPAB_03593 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403667|gb|ACF63889.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194407190|gb|ACF67409.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194455058|gb|EDX43897.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194713083|gb|ACF92304.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197211993|gb|ACH49390.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197242015|gb|EDY24635.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197290886|gb|EDY30240.1| type III secretion apparatus protein, YscR/HrcR family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197939539|gb|ACH76872.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|199604984|gb|EDZ03529.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204322387|gb|EDZ07584.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205273614|emb|CAR38601.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205328735|gb|EDZ15499.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205334464|gb|EDZ21228.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|205338099|gb|EDZ24863.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205342860|gb|EDZ29624.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205349049|gb|EDZ35680.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|206709955|emb|CAR34309.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|218988950|gb|ACL13613.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. salamae serovar Sofia]
 gi|224469195|gb|ACN47025.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|261248026|emb|CBG25859.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267995018|gb|ACY89903.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301159449|emb|CBW18967.1| type III secretion system secretory apparatus [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312913908|dbj|BAJ37882.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320087295|emb|CBY97060.1| Surface presentation of antigens protein spaP [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321223439|gb|EFX48505.1| Surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322614292|gb|EFY11223.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322621644|gb|EFY18497.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322624505|gb|EFY21338.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322628836|gb|EFY25619.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322633437|gb|EFY30179.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322635987|gb|EFY32695.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322639695|gb|EFY36380.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322646878|gb|EFY43381.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322650646|gb|EFY47051.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322654741|gb|EFY51060.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658962|gb|EFY55215.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322664471|gb|EFY60665.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322668280|gb|EFY64437.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673740|gb|EFY69841.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322677801|gb|EFY73864.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322681369|gb|EFY77401.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322683771|gb|EFY79781.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|322715876|gb|EFZ07447.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|323131242|gb|ADX18672.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323193840|gb|EFZ79043.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323200310|gb|EFZ85392.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323203187|gb|EFZ88216.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323205566|gb|EFZ90531.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323210077|gb|EFZ94980.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323216380|gb|EGA01107.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323221127|gb|EGA05558.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323226949|gb|EGA11131.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323230767|gb|EGA14885.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323234882|gb|EGA18968.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323238921|gb|EGA22971.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323241621|gb|EGA25652.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323248232|gb|EGA32168.1| type III secretion system protein SpaP [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323251184|gb|EGA35057.1| type III secretion system protein SpaP [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256068|gb|EGA39806.1| type III secretion system protein SpaP [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323263203|gb|EGA46741.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323264294|gb|EGA47800.1| type III secretion system protein SpaP [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271120|gb|EGA54548.1| type III secretion system protein SpaP [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326624621|gb|EGE30966.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326628942|gb|EGE35285.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332989762|gb|AEF08745.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 224

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 122/207 (58%), Gaps = 11/207 (5%)

Query: 50  SIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSIE 108
           ++ P ++   TCF +F IVF ++R  +G+  +P N+ +  +AL ++ +VM P + D  + 
Sbjct: 15  TLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSMFVMWPIMHDAYVY 74

Query: 109 MGIQPLMNNQITE-TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR---NTDITKN 164
              + +  N I+  +  +    + +  ++   + +++L  F + A    +    T+  K 
Sbjct: 75  FEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYS-DRELVQFFENAQLKRQYGEETETVKR 133

Query: 165 DHIEYR-----ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           D  E        L+P++ +SE++ +F+IGF + LPF+++D++V+++++A+GMMM+ P +I
Sbjct: 134 DKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALGMMMMSPVTI 193

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
           S P K++ FV +DGW+LL + L+  ++
Sbjct: 194 STPIKLVLFVALDGWTLLSKGLILQYM 220


>gi|973298|gb|AAC43960.1| SpaP [Salmonella enterica]
 gi|975743|gb|AAC43837.1| SpaP [Salmonella enterica]
 gi|975747|gb|AAC43840.1| SpaP [Salmonella enterica]
 gi|975751|gb|AAC43843.1| SpaP [Salmonella enterica]
          Length = 224

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 122/207 (58%), Gaps = 11/207 (5%)

Query: 50  SIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSIE 108
           ++ P ++   TCF +F IVF ++R  +G+  +P N+ +  +AL ++ +VM P + D  + 
Sbjct: 15  TLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSMFVMWPIMHDAYVY 74

Query: 109 MGIQPLMNNQITE-TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR---NTDITKN 164
              + +  N I+  +  +    + +  ++   + +++L  F + A    +    T+  K 
Sbjct: 75  FEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYS-DRELVQFFENAQLKRQYGEETEAVKR 133

Query: 165 DHIEYR-----ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           D  E        L+P++ +SE++ +F+IGF + LPF+++D++V+++++A+GMMM+ P +I
Sbjct: 134 DKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALGMMMMSPVTI 193

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
           S P K++ FV +DGW+LL + L+  ++
Sbjct: 194 STPIKLVLFVALDGWTLLSKGLILQYM 220


>gi|975755|gb|AAC43846.1| SpaP [Salmonella enterica]
 gi|975759|gb|AAC43849.1| SpaP [Salmonella enterica]
          Length = 224

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 120/204 (58%), Gaps = 11/204 (5%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL-DRSIEMGI 111
           P ++   TCF +F IVF ++R  +G+  +P N+ +  +AL ++ +VM P + D  +    
Sbjct: 18  PFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSMFVMWPIMHDAYVYFED 77

Query: 112 QPLMNNQITE-TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR---NTDITKNDHI 167
           + +  N I+  +  +    + +  ++   + +++L  F + A    +    T+  K D  
Sbjct: 78  EGVSFNDISSLSKHVDEGLDGYRDYLIKYS-DRELVQFFESAQLKRQYGEETETVKRDKE 136

Query: 168 EYR-----ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
           E        L+P++ +SE++ +F+IGF + LPF+++D++V+++++A+GMMM+ P +IS P
Sbjct: 137 EIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALGMMMMSPVTISTP 196

Query: 223 FKVIFFVLIDGWSLLVENLVKSFI 246
            K++ FV +DGW+LL + L+  ++
Sbjct: 197 IKLVLFVALDGWTLLSKGLILQYM 220


>gi|218512614|ref|ZP_03509454.1| type III secretion system protein [Rhizobium etli 8C-3]
          Length = 148

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 51/119 (42%), Positives = 72/119 (60%)

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           +VA P   FM   +  +    F+  +     N   T     +  +L PSF++SEL R+FE
Sbjct: 28  KVAAPLKDFMLKFSDAEVRDFFVQASQKIWANAPATPIASDDITVLTPSFLVSELTRAFE 87

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGFLI LPFL+ID  V+ I++A+GM M+ PT +S P K++ FV IDGW  L+E LV S+
Sbjct: 88  IGFLIYLPFLMIDFAVSAILVALGMQMMSPTVVSTPLKLLLFVSIDGWRRLLEGLVLSY 146


>gi|218670413|ref|ZP_03520084.1| flagellar biosynthesis protein FliP [Rhizobium etli GR56]
          Length = 84

 Score = 95.5 bits (236), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 61/83 (73%), Gaps = 1/83 (1%)

Query: 1  MIRYC-FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
          MIR+  F A  +  PEL  A+    D++N+P D S++ WI+RTFG+ TILS+AP +LIMV
Sbjct: 1  MIRFIIFLAAMMAVPELAVAQQLPTDLLNVPVDGSVAAWIIRTFGLLTILSVAPGILIMV 60

Query: 60 TCFPRFIIVFSILRTGMGMGSVP 82
          T FPRFII FSILR+G+G+ S P
Sbjct: 61 TSFPRFIIAFSILRSGIGLSSTP 83


>gi|289805085|ref|ZP_06535714.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 111

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 72/110 (65%)

Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195
           M+ N+ EK+ + F ++   +       K       ILIP+F +S+L ++F IG LI LPF
Sbjct: 1   MQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPF 60

Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           L ID++++ I++AMGMMM+ P +ISLPFK++ F+L  GW L +  LV+SF
Sbjct: 61  LAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF 110


>gi|179741104|gb|ACB86705.1| HrcR [Pseudomonas fluorescens]
          Length = 162

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 96/159 (60%), Gaps = 10/159 (6%)

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSP---TLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132
           +G+  VPP++ I  +AL  T ++M+P    +  +++     + N Q  + T +  + EP 
Sbjct: 2   IGVQQVPPSMAINGIALAATLFIMAPVGYQVAENLKNAPLDMSNVQTLQQTGLVAI-EPL 60

Query: 133 WVFMRNNTREKDLSLFMDMAHSSHR--NTDITKNDHIEYRIL-IPSFMISELRRSFEIGF 189
             FM+ N    D  +   M  SS R    ++ ++   E  IL IPSF++S+L+  FEIGF
Sbjct: 61  RAFMKRNI---DPDVLTHMHESSARMWPPEMAQSTEREDLILLIPSFVLSQLQAGFEIGF 117

Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
           LI +PF++ID+IV+ +++A+GM M+ P +ISLPFK++ F
Sbjct: 118 LIYIPFIVIDLIVSNLLLALGMQMVSPMTISLPFKLLLF 156


>gi|8996030|gb|AAF82329.1|AF005744_8 YsaR [Yersinia enterocolitica]
          Length = 224

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 109/206 (52%), Gaps = 14/206 (6%)

Query: 50  SIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEM 109
           S+ P ++   TC+   I   +      G  +    L +  +AL ++ +VM P +      
Sbjct: 19  SLLPFVIAAGTCYLENINRANYGAQCDGGTTGTFRLALNGIALLLSLFVMMPVIQD---- 74

Query: 110 GIQPLMNNQITETTAIQRVAE-------PFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT 162
            +   M  +  + + +  V +        +  +++  +  + L+ F  +         + 
Sbjct: 75  -VNHYMRTEKVDFSNVDSVDKFIDGGLGSYTAYLKKYSDPELLNFFESLQQGRSEEESMA 133

Query: 163 KNDHIEYRI--LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
           + D  E  +  L+P++ +SE++ +FEIGF I LPF++ID+I+++I++A+GMMM+ P +IS
Sbjct: 134 EADTREPALFSLLPAYALSEIKSAFEIGFYIYLPFVVIDLIISSILLALGMMMMSPVTIS 193

Query: 221 LPFKVIFFVLIDGWSLLVENLVKSFI 246
           +P K+I FV IDGW+L+ + L+  ++
Sbjct: 194 VPVKLILFVAIDGWALISKGLIMQYM 219


>gi|255523691|ref|ZP_05390657.1| type III secretion system inner membrane P protein [Clostridium
           carboxidivorans P7]
 gi|255512560|gb|EET88834.1| type III secretion system inner membrane P protein [Clostridium
           carboxidivorans P7]
          Length = 70

 Score = 92.4 bits (228), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 41/69 (59%), Positives = 60/69 (86%)

Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
           MISEL+ +F IGF++ +PF+IID++VA+++M+MGM MLPP  +SLPFK++ FV++DGW L
Sbjct: 1   MISELKTAFMIGFMLYIPFMIIDLVVASVLMSMGMFMLPPAMVSLPFKLLLFVMVDGWYL 60

Query: 237 LVENLVKSF 245
           LV++LV SF
Sbjct: 61  LVKSLVSSF 69


>gi|179742187|gb|ACB86736.1| HrcR [uncultured soil bacterium]
          Length = 155

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 96/159 (60%), Gaps = 10/159 (6%)

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN-NQITE--TTAIQRVAEPF 132
           +G+  VPPN+V+  +A+ ++ Y+M+P    +++ G+Q       +T+  T  I    EPF
Sbjct: 1   IGVQQVPPNMVLNGIAIIVSVYIMAPVAFSAMQ-GMQANQAPGNVTQNVTAGIAAAREPF 59

Query: 133 WVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189
             F+  + + ++   F+  A +   + +   +   D I   +L P+F ++EL  +F+IGF
Sbjct: 60  RTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLI---VLAPAFTLTELTDAFKIGF 116

Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
           L+ + F+++D+++A ++MAMG+  + PT++++PFK++ F
Sbjct: 117 LLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPFKLLLF 155


>gi|179742716|gb|ACB86743.1| HrcR [uncultured soil bacterium]
          Length = 160

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 88/162 (54%), Gaps = 14/162 (8%)

Query: 74  TGMGMGSVPPNLVIISLALFMTFYVMSPTL--------DRSIEMGIQPLMNNQITETTAI 125
           + +G+  VPPN+    +AL  T +VM+P          D  +EMG    +  Q +  T I
Sbjct: 5   SDLGVQQVPPNMATHGIALAATMFVMAPVAHEIQQRVHDHPLEMGSTDRL--QASANTVI 62

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
               EP   FM  NT    ++  +D            +    +  + +P+F++SEL+  F
Sbjct: 63  ----EPLQRFMTRNTDPDVIAHLLDNTQRMWPKDMADQASKSDLLLAVPAFVLSELQAGF 118

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227
           +IGFLI +PF++ID+IV+ +++A+GM M+ P +ISLPFK++ 
Sbjct: 119 QIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTISLPFKLLL 160


>gi|149922183|ref|ZP_01910621.1| flagellar biosynthesis protein [Plesiocystis pacifica SIR-1]
 gi|149816923|gb|EDM76408.1| flagellar biosynthesis protein [Plesiocystis pacifica SIR-1]
          Length = 216

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 97/189 (51%), Gaps = 13/189 (6%)

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F +  IV + +R G+    + P   +++L + +T  VM+P      E     L  +  
Sbjct: 37  TAFTKIAIVLAAVRQGLSADRLLPVSSMLALGVALTAVVMAPVAGACAEALAALLDASAA 96

Query: 120 TETTAIQR---VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
            E  A+++     EP   FM  +T   +L     +A +S R  D       +  IL+P+F
Sbjct: 97  GEGVALRQWLGTLEPLRGFMATHTDPAELE---RLAAASERGVD-------DPLILVPAF 146

Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
           ++SEL    ++  L++LPF++ID+IVA +   +G+   P  + +LP KV+ F+  DGW L
Sbjct: 147 LVSELGAGLQLAVLVLLPFVVIDLIVAEVQALLGLQQTPSVTFALPAKVLVFLAADGWHL 206

Query: 237 LVENLVKSF 245
           +V  LV+ +
Sbjct: 207 VVVGLVEGY 215


>gi|179741187|gb|ACB86708.1| HrcR [Dyella japonica]
          Length = 154

 Score = 89.0 bits (219), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 94/161 (58%), Gaps = 16/161 (9%)

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI--TETTAIQRV----AE 130
           G+  VPPN+V+  +A+ ++ Y+M+P   ++     Q L   QI    T A+ +V     E
Sbjct: 1   GVQQVPPNMVLNGIAILVSLYIMAPIGMQAA----QSLQGQQIDGQPTQALIQVFSAARE 56

Query: 131 PFWVFMRNNTREKDLSLFMDMAH---SSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
           PF +F+  +  E++   F+  A           + +ND I   +L P+F +SEL  +F+I
Sbjct: 57  PFRLFLEKHAHEREKRFFIRSASVVWPKEAARALHENDMI---VLAPAFTLSELTDAFKI 113

Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
           GFL+ + F++ID+I+A +++AMG+  + PT++++P K++ F
Sbjct: 114 GFLLYIAFIVIDLIIANVLLAMGLNQVQPTNVAIPLKLLLF 154


>gi|323155908|gb|EFZ42075.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli EPECa14]
          Length = 195

 Score = 89.0 bits (219), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 91/159 (57%), Gaps = 10/159 (6%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP-TL 103
           +F +LS+ PI +++ T F +  IV  IL+  +G+  VPPN+ + S++L +T ++MSP  L
Sbjct: 17  VFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIIL 76

Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
             +  +  +P+     T++   Q+V E    P+  F+  NT ++++  F   A     N 
Sbjct: 77  QINDNISQEPI---NYTDSDFFQKVDEKILSPYRGFLEKNTEKENVEFFERAAQKKLGNE 133

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
            I K D +   IL+P+F + +L  +F+IGFL+ LPF+ I
Sbjct: 134 TILKKDSL--FILLPAFTMGQLEAAFKIGFLLYLPFIAI 170


>gi|324119902|gb|EGC13781.1| FliP family protein [Escherichia coli E1167]
          Length = 172

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 68/93 (73%)

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
           +SS  N +I  +D+I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM
Sbjct: 73  NSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 132

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+ P +IS P K+I FV +DGW++L + L+  +
Sbjct: 133 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 165


>gi|293416108|ref|ZP_06658748.1| hypothetical protein ECDG_03710 [Escherichia coli B185]
 gi|291432297|gb|EFF05279.1| hypothetical protein ECDG_03710 [Escherichia coli B185]
          Length = 172

 Score = 88.6 bits (218), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 68/93 (73%)

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
           +SS  N +I  +D+I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM
Sbjct: 73  NSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 132

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+ P +IS P K+I FV +DGW++L + L+  +
Sbjct: 133 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 165


>gi|320189199|gb|EFW63858.1| surface presentation of antigens protein SpaP [Escherichia coli
           O157:H7 str. EC1212]
 gi|326339060|gb|EGD62875.1| surface presentation of antigens protein SpaP [Escherichia coli
           O157:H7 str. 1044]
 gi|326343059|gb|EGD66827.1| surface presentation of antigens protein SpaP [Escherichia coli
           O157:H7 str. 1125]
          Length = 158

 Score = 88.6 bits (218), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 68/93 (73%)

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
           +SS  N +I  +D+I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM
Sbjct: 59  NSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 118

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+ P +IS P K+I FV +DGW++L + L+  +
Sbjct: 119 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 151


>gi|323183415|gb|EFZ68812.1| putative type III secretion apparatus integral membrane protein
           component [Escherichia coli 1357]
          Length = 165

 Score = 88.6 bits (218), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 68/93 (73%)

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
           +SS  N +I  +D+I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM
Sbjct: 66  NSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 125

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+ P +IS P K+I FV +DGW++L + L+  +
Sbjct: 126 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 158


>gi|330985216|gb|EGH83319.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 93

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 42/92 (45%), Positives = 65/92 (70%), Gaps = 3/92 (3%)

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
           S     D+  +D +   +LIP+F+ SEL R+FEIGFL+ +PFL++D++V+ ++MAMGM M
Sbjct: 3   SPEARADLRDDDLV---VLIPAFVSSELTRAFEIGFLLYIPFLVVDLLVSNVLMAMGMSM 59

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           + PT IS+P K+  FV + GWS L+  L+ S+
Sbjct: 60  VSPTLISIPLKIFLFVALSGWSRLMHGLILSY 91


>gi|320202506|gb|EFW77076.1| surface presentation of antigens protein SpaP [Escherichia coli
           EC4100B]
          Length = 126

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 68/93 (73%)

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
           +SS  N +I  +D+I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM
Sbjct: 27  NSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 86

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+ P +IS P K+I FV +DGW++L + L+  +
Sbjct: 87  MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 119


>gi|331643550|ref|ZP_08344681.1| surface presentation of antigens secretory protein [Escherichia
           coli H736]
 gi|331037021|gb|EGI09245.1| surface presentation of antigens secretory protein [Escherichia
           coli H736]
          Length = 172

 Score = 88.2 bits (217), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 68/93 (73%)

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
           +SS  N +I  +D+I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM
Sbjct: 73  NSSEDNEEIFDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 132

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+ P +IS P K+I FV +DGW++L + L+  +
Sbjct: 133 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 165


>gi|179741127|gb|ACB86706.1| HrcR [Burkholderia terrae]
          Length = 155

 Score = 88.2 bits (217), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 98/162 (60%), Gaps = 16/162 (9%)

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ----ITE--TTAIQRVA 129
           +G+  VPPN+V+  +A+ ++ Y+M+P    +++ G+Q    NQ    +T+  T  I    
Sbjct: 1   IGVQQVPPNMVLNGIAIIVSVYIMAPVAFSAMQ-GMQA---NQAPGNVTQNVTAGIAAAR 56

Query: 130 EPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           EPF  F+  + + ++   F+  A +   + +   +   D I   +L P+F ++EL  +F+
Sbjct: 57  EPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLI---VLAPAFTLTELTDAFK 113

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
           IGFL+ + F+++++++A ++MAMG+  + PT++++PFK++ F
Sbjct: 114 IGFLLYIGFIVVNLVIANVLMAMGLNQVQPTNVAIPFKLLLF 155


>gi|179742060|gb|ACB86734.1| HrcR [uncultured soil bacterium]
          Length = 157

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 96/162 (59%), Gaps = 16/162 (9%)

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ----ITE--TTAIQRVA 129
           +G+  VPPN+V+  +A+ ++ Y+M+P    +++ G+Q    NQ    +T+  T  I    
Sbjct: 1   IGVQQVPPNMVLNGIAIIVSVYIMAPVAFSAMQ-GMQA---NQAPGNVTQNVTAGIAAAR 56

Query: 130 EPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           EPF  F+  + + ++   F+  A +   + +   +   D I   +L P+F ++EL  +F+
Sbjct: 57  EPFRTFLEAHAKSRERQFFLRSATALWPAQQAKALKDTDLI---VLAPAFTLTELTDAFK 113

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
           IGFL+ + F+++D+++A ++MAMG+    PT++++P K++ F
Sbjct: 114 IGFLLYIGFIVVDLVIANVLMAMGLNQAQPTNVAIPLKLLLF 155


>gi|312972918|ref|ZP_07787091.1| putative type III secretion apparatus integral membrane protein
           component [Escherichia coli 1827-70]
 gi|310332860|gb|EFQ00074.1| putative type III secretion apparatus integral membrane protein
           component [Escherichia coli 1827-70]
 gi|332344757|gb|AEE58091.1| Type III secretion apparatus protein EpaP [Escherichia coli UMNK88]
          Length = 126

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 68/93 (73%)

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
           +SS  N +I  +D+I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM
Sbjct: 27  NSSEDNEEIFDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 86

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+ P +IS P K+I FV +DGW++L + L+  +
Sbjct: 87  MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 119


>gi|179741593|gb|ACB86720.1| HrcR [uncultured soil bacterium]
          Length = 157

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 95/159 (59%), Gaps = 10/159 (6%)

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN-NQITE--TTAIQRVAEPF 132
           +G+  VPPN+V+  +A+ ++ Y+M+P    +++ G+Q       +T+  T  I    EPF
Sbjct: 1   IGVQQVPPNMVLNGIAIIVSVYIMAPVAFSAMQ-GMQANQAPGNVTQNVTAGITAAREPF 59

Query: 133 WVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189
             F+  + + ++   F+  A +   + +   +   D I   +L P+F ++EL  +F+IGF
Sbjct: 60  RTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLI---VLAPAFTLTELTDAFKIGF 116

Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
           L+ + F+++D+++A ++MAMG+  + PT++++P K++ F
Sbjct: 117 LLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 155


>gi|179742029|gb|ACB86733.1| HrcR [uncultured soil bacterium]
          Length = 157

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 95/162 (58%), Gaps = 16/162 (9%)

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ----ITE--TTAIQRVA 129
           +G+  VPPN+V+  +A+ ++ Y+M+P    ++    Q +  NQ    +T+  T  I    
Sbjct: 1   IGVQQVPPNMVLNGIAIIVSVYIMAPVAFSAM----QGMQANQAPGNVTQNVTAGIAAAR 56

Query: 130 EPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           EPF  F+  + + ++   F+  A +   + +   +   D I   +L P+F ++EL  +F+
Sbjct: 57  EPFRTFLEVHAQSRERQFFLRSATALWPAQQAKALKDTDLI---VLAPAFTLTELTGAFK 113

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
           IGFL+ + F+++D+++A ++MAMG+  + PT++++P K++ F
Sbjct: 114 IGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 155


>gi|331654351|ref|ZP_08355351.1| surface presentation of antigens secretory protein [Escherichia
           coli M718]
 gi|331047733|gb|EGI19810.1| surface presentation of antigens secretory protein [Escherichia
           coli M718]
          Length = 172

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 67/93 (72%)

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
           + S  N +I  +D+I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM
Sbjct: 73  NGSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 132

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+ P +IS P K+I FV +DGW++L + L+  +
Sbjct: 133 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 165


>gi|179741780|gb|ACB86726.1| HrcR [uncultured soil bacterium]
          Length = 157

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 95/159 (59%), Gaps = 10/159 (6%)

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN-NQITE--TTAIQRVAEPF 132
           +G+  VPPN+V+  +A+ ++ Y+ +P    +++ G+Q       +T+  T  I    EPF
Sbjct: 1   IGVQQVPPNMVLNGIAIIVSVYITAPVAFSAMQ-GMQANQAPGNVTQNVTAGIAAAREPF 59

Query: 133 WVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189
             F++ + + ++   F+  A +   + +   +   D I   +L P+F ++EL  +F+IGF
Sbjct: 60  RTFLKAHAQSRERQFFLRSATALWPAQQAKALKDTDLI---VLAPAFTLTELTDAFKIGF 116

Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
           L+ + F+++D+++A ++MAMG+  + PT++++P K++ F
Sbjct: 117 LLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 155


>gi|327251616|gb|EGE63302.1| putative type III secretion apparatus integral membrane protein
           component [Escherichia coli STEC_7v]
          Length = 158

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 68/93 (73%)

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
           +SS  N +I  +++I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM
Sbjct: 59  NSSEDNEEIIDDENISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 118

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+ P +IS P K+I FV +DGW++L + L+  +
Sbjct: 119 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 151


>gi|179742748|gb|ACB86744.1| HrcR [uncultured soil bacterium]
          Length = 158

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 94/167 (56%), Gaps = 25/167 (14%)

Query: 80  SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA--------IQRVAEP 131
            VPP  V+  +A+ ++ ++M+P       +G++ +   Q++            +    EP
Sbjct: 3   QVPPTSVLNGVAIMVSCFIMAP-------VGMEAMHRAQLSSDAGSGMQVMPLLDAAREP 55

Query: 132 FWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188
           F VF++ +  E++ + F+  A       R  ++ ++D I   +L P+F +SEL  +F++G
Sbjct: 56  FRVFLKRHASEREKAFFLRSAREIWPPERAAELKQDDLI---VLAPAFTLSELTAAFKMG 112

Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235
           FL+ L F++ID+++A+++MA+G+  + PT +++P +++ F    GW 
Sbjct: 113 FLLYLAFIVIDLVIASVLMALGLSQVDPTDVAIPLELLLF----GWG 155


>gi|179741157|gb|ACB86707.1| HrcR [Burkholderia terrae]
          Length = 154

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 92/156 (58%), Gaps = 10/156 (6%)

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN-NQITE--TTAIQRVAEPFWVF 135
             VPPN+V+  +A+ ++ Y+M+P    +++ G+Q       +T+  T  I    EPF  F
Sbjct: 3   AQVPPNMVLNGIAIIVSVYIMAPVAFSAMQ-GMQANQAPGNVTQNVTAGIAAAREPFRTF 61

Query: 136 MRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192
           +  + + ++   F+  A +   + +   +   D I   +L P+F ++EL  +F+IGFL+ 
Sbjct: 62  LEAHAQSRERQFFLRSATALWPAQQAKALKDTDLI---VLAPAFTLTELTDAFKIGFLLY 118

Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
           + F+++D+++A ++MAMG+  + PT++++P K++ F
Sbjct: 119 IGFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 154


>gi|255523692|ref|ZP_05390658.1| type III secretion system inner membrane P protein [Clostridium
           carboxidivorans P7]
 gi|255512561|gb|EET88835.1| type III secretion system inner membrane P protein [Clostridium
           carboxidivorans P7]
          Length = 164

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 43/98 (43%), Positives = 58/98 (59%)

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           TIL+I P  ++M+T F R I+VF  LR  MG    PPN ++I LALF+T ++M P   + 
Sbjct: 63  TILTILPSFIMMMTSFVRIIVVFGFLRGAMGTQQSPPNTILIGLALFLTVFIMQPVYSKV 122

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
               IQP M N+IT+  AI   A+P   FM   T +KD
Sbjct: 123 NTNAIQPYMQNKITQEQAIDEGAKPLRQFMLKYTYKKD 160


>gi|179741500|gb|ACB86717.1| HrcR [uncultured soil bacterium]
          Length = 157

 Score = 85.5 bits (210), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 96/162 (59%), Gaps = 16/162 (9%)

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ----ITE--TTAIQRVA 129
           +G+  VPPN+V+  +A+ ++ Y+M+P    +++ G+Q    NQ    +T+  T  I    
Sbjct: 1   IGVQQVPPNMVLNGIAIIVSVYIMAPVAFSAMQ-GMQA---NQAPGNVTQNVTAGIAAAR 56

Query: 130 EPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           EPF  F+  + + ++   F+  A +   + +   +   D I   +L P+F ++EL  +F+
Sbjct: 57  EPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLI---VLAPAFTLTELTDAFK 113

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
           IGFL+ + F+++D+++A ++MAMG+  + PT++++P K++  
Sbjct: 114 IGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLL 155


>gi|179741622|gb|ACB86721.1| HrcR [uncultured soil bacterium]
          Length = 157

 Score = 85.5 bits (210), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 95/159 (59%), Gaps = 10/159 (6%)

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN-NQITE--TTAIQRVAEPF 132
           +G+  VPPN+V+  +A+ ++ ++M+P    +++ G+Q       +T+  T  I    EPF
Sbjct: 1   IGVQQVPPNMVLNGIAIIVSVHIMAPVAFSAMQ-GMQANQAPGNVTQNVTAGIAAAREPF 59

Query: 133 WVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189
             F+  + + ++   F+  A +   + +   +   D I   +L P+F ++EL  +F+IGF
Sbjct: 60  RTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLI---VLAPAFTLTELTDAFKIGF 116

Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
           L+ + F+++D+++A ++MAMG+  + PT++++P K++ F
Sbjct: 117 LLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 155


>gi|179741249|gb|ACB86709.1| HrcR [uncultured soil bacterium]
          Length = 157

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 95/161 (59%), Gaps = 14/161 (8%)

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL-----MNNQITETTAIQRVAE 130
           +G+  VPPN+V+  +A+ ++ Y+M+P    +++ G+Q       +   +T   A  RV  
Sbjct: 1   IGVQQVPPNMVLNGIAIIVSVYIMAPVAFSAMQ-GMQANQAPGNVTQNVTAGIAAARV-- 57

Query: 131 PFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
           PF  F+  + +  +   F+  A +   + +   +   D I   +L P+F ++EL  +F+I
Sbjct: 58  PFRTFLEAHAQSCERQFFLRSATALWPAQQAKALKDTDLI---VLAPAFTLTELTDAFKI 114

Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
           GFL+ + F+++D+++A ++MAMG+  + PT++++PFK++ F
Sbjct: 115 GFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPFKLLLF 155


>gi|179741467|gb|ACB86716.1| HrcR [uncultured soil bacterium]
          Length = 122

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 72/112 (64%), Gaps = 3/112 (2%)

Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
             + ET  + +  EP   F+  ++R  + + F+  A        +  +D  ++ I +P+F
Sbjct: 12  GNMVETANLAK--EPLREFLLKHSRPNERAFFLRTAQRVDPARSVEMSDR-DFVITVPAF 68

Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
           +++EL  +F+IGFLI LPFL+ID++++ I++AMGMMML PT+ISLP K++ F
Sbjct: 69  VVNELSVAFQIGFLIFLPFLVIDLVISNILLAMGMMMLSPTTISLPLKLLLF 120


>gi|179741693|gb|ACB86723.1| HrcR [uncultured soil bacterium]
          Length = 157

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 96/162 (59%), Gaps = 16/162 (9%)

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ----ITE--TTAIQRVA 129
           +G+  VP N+V+  +A+ ++ Y+M+P    +++ G+Q    NQ    +T+  T  I    
Sbjct: 1   IGVQQVPLNMVLNGIAIIVSVYIMAPVAFSAMQ-GMQA---NQAPGNVTQNVTAGIAAAR 56

Query: 130 EPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           EPF  F+  + + ++   F+  A +   + +   +   D I   +L P+F ++EL  +F+
Sbjct: 57  EPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLI---VLAPAFTLTELTDAFK 113

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
           IGFL+ + F+++D+++A ++MAMG+  + PT++++P K++ F
Sbjct: 114 IGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 155


>gi|226326424|ref|ZP_03801942.1| hypothetical protein PROPEN_00272 [Proteus penneri ATCC 35198]
 gi|225205207|gb|EEG87561.1| hypothetical protein PROPEN_00272 [Proteus penneri ATCC 35198]
          Length = 105

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 68/95 (71%), Gaps = 2/95 (2%)

Query: 154 SSHRNTDITKNDHIEYRIL--IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
             +R      +++IE  +L  +P++ +SE++ +F IGF + LPF++ID++V+ I++A+GM
Sbjct: 5   QGNRPESHGDSENIESSLLSLLPAYALSEIKSAFIIGFYLYLPFIVIDLVVSCILLALGM 64

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           MM+ P ++S+P K+I F+ +DGW+LL + L+  ++
Sbjct: 65  MMMSPITLSVPLKLILFIAMDGWTLLSKGLINQYL 99


>gi|179741073|gb|ACB86704.1| HrcR [Burkholderia cepacia]
          Length = 157

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 87/154 (56%), Gaps = 3/154 (1%)

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSP---TLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132
           +G+  VPPN+V+  +A+ ++ YV++P      R++     P    +     A     EPF
Sbjct: 3   IGVQQVPPNMVLNGIAILVSAYVLAPVAIAASRNLPTDRPPANRVRRRWMQAFSAAREPF 62

Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192
             F+  +  +++   F+  A         ++    +  +L P+F ++EL  +F+IGFL+ 
Sbjct: 63  RTFLEAHAHQRERRFFVRSAAMVWPKDVASELKDTDLFVLAPAFTLTELTEAFKIGFLLY 122

Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
           + F+++D+I+A +++AMG+  + PT++++PFK++
Sbjct: 123 VAFIVVDLIIANVLLAMGLNQVQPTNVAIPFKLL 156


>gi|179742405|gb|ACB86739.1| HrcR [uncultured soil bacterium]
          Length = 154

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 89/158 (56%), Gaps = 34/158 (21%)

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTL--------DRSIEMGIQPLMNNQITETTAIQRV 128
           G+  VPPN+ +  +AL  T +VM+P          D  +EMG     + +  +T+A+  V
Sbjct: 2   GVQQVPPNMAMYGIALAATMFVMAPVAHDIQQRVHDHPLEMG-----STEKLQTSAM-TV 55

Query: 129 AEPFWVFMRNNTREKDLSLFM----------DMAHSSHRNTDITKNDHIEYRILIPSFMI 178
            EP   FM  NT + D+S  +          DMA  +      TKND +   + +P+F++
Sbjct: 56  IEPLQRFMTRNT-DPDVSAHLLDNTQRMWPKDMADQA------TKNDLL---LAVPAFVL 105

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
           SEL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ P
Sbjct: 106 SELQAGFQIGFLIYIPFIVIDLIVSNLLLALGMQMVSP 143


>gi|225181597|ref|ZP_03735038.1| type III secretion system inner membrane P protein [Dethiobacter
           alkaliphilus AHT 1]
 gi|225167705|gb|EEG76515.1| type III secretion system inner membrane P protein [Dethiobacter
           alkaliphilus AHT 1]
          Length = 131

 Score = 82.4 bits (202), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 67/123 (54%), Gaps = 4/123 (3%)

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R ++V   +R  +     PPN VII LALF+TF++M+P   R  E  I P + ++I
Sbjct: 2   TSFTRIVVVLGFVRNALATQQTPPNRVIIGLALFLTFFIMAPIYSRVNETAILPSLEDEI 61

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           T   A+   + P   FM   T EK L LF++++      T     D +   +L+P+F+IS
Sbjct: 62  TSEYALATRSPPLERFMVQQTTEKVLPLFVNLSDGERPET----MDDLPMHVLVPAFVIS 117

Query: 180 ELR 182
           EL+
Sbjct: 118 ELK 120


>gi|270488967|ref|ZP_06206041.1| FliP family protein [Yersinia pestis KIM D27]
 gi|270337471|gb|EFA48248.1| FliP family protein [Yersinia pestis KIM D27]
          Length = 169

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 50/148 (33%), Positives = 84/148 (56%), Gaps = 6/148 (4%)

Query: 48  ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRS 106
           +LS+ P+L++M T F +  +VFS+LR  +G+  VPPN+ I  LAL +T ++M+P  LD  
Sbjct: 16  MLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQ 75

Query: 107 IEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSS--HRNTDITK 163
             +  + L N+       I Q    P+  F++ NT  + ++ F D+  +    R  D  K
Sbjct: 76  ARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVK 135

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLI 191
            D +   IL+P+F +S+L  +F+IG L+
Sbjct: 136 PDSL--LILMPAFTLSQLNEAFKIGLLL 161


>gi|179741717|gb|ACB86724.1| HrcR [uncultured soil bacterium]
          Length = 158

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 88/158 (55%), Gaps = 8/158 (5%)

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFW 133
           +G+  VPPN+V+  +A+ +      P    +++          +T+  T  I    EPF 
Sbjct: 2   IGVQQVPPNMVLNGIAIIVLASPTPPVAFSAMQGKQANQAPGNVTQNVTAGIAAAREPFC 61

Query: 134 VFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
            F+  + + ++   F+  A +   + +   +   D I   +L P+F ++EL  +F+IGFL
Sbjct: 62  TFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLI---VLAPAFTLTELTDAFKIGFL 118

Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
           + + F+++D+++A ++MAMG+  + PT++++PFK++ F
Sbjct: 119 LYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPFKLLLF 156


>gi|179741438|gb|ACB86715.1| HrcR [uncultured soil bacterium]
          Length = 157

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 93/159 (58%), Gaps = 10/159 (6%)

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN-NQITE--TTAIQRVAEPF 132
           +G+  VPPN+V+  +A+ ++  + +P    +++ G+Q       +T+  T  I    EPF
Sbjct: 1   IGVQQVPPNMVLNGIAIIVSVSLPAPVAFSAMQ-GMQANQAPGNVTQNVTAGIAAAREPF 59

Query: 133 WVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189
             F+  + + ++   F+  A +   + +   +   D I   +L P+F ++EL  +F+IGF
Sbjct: 60  RTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLI---VLAPAFTLTELTDAFKIGF 116

Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
           L+ + F+++D+++A ++MAMG+  + PT++++P K++ F
Sbjct: 117 LLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 155


>gi|179742484|gb|ACB86740.1| HrcR [uncultured soil bacterium]
          Length = 153

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 88/154 (57%), Gaps = 16/154 (10%)

Query: 83  PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE--TTAIQRV----AEPFWVFM 136
           PN+V+  +A+ ++ Y+M+P   ++     Q L   QI    T A+ +V     EPF +F+
Sbjct: 7   PNMVLNGIAILVSLYIMAPIGMQAA----QSLQGQQIDGRPTQALIQVFSAAREPFRLFL 62

Query: 137 RNNTREKDLSLFMDMAH---SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
             +  E+    F+  A           + +ND I   +L P+F +SEL  +F+IGFL+ +
Sbjct: 63  EKHAHERGKRFFIRSASVVWPKEAARALHENDMI---VLAPAFTLSELTDAFKIGFLLYI 119

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227
            F++ID+I+A +++AMG+  + PT++++P K++ 
Sbjct: 120 AFIVIDLIIANVLLAMGLNQVQPTNVAIPLKLLL 153


>gi|323267198|gb|EGA50683.1| type III secretion system protein YscR [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
          Length = 69

 Score = 78.6 bits (192), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 53/68 (77%)

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
           +S+L ++F IG LI LPFL ID++++ I++AMGMMM+ P +ISLPFK++ F+L  GW L 
Sbjct: 1   MSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLT 60

Query: 238 VENLVKSF 245
           +  LV+SF
Sbjct: 61  LAQLVQSF 68


>gi|179741659|gb|ACB86722.1| HrcR [uncultured soil bacterium]
          Length = 157

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 94/162 (58%), Gaps = 16/162 (9%)

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ----ITE--TTAIQRVA 129
           +G+  VP N+V+  +A+ ++  + +P    +++ G+Q    NQ    +T+  T  I    
Sbjct: 1   IGVQQVPLNMVLNGIAIIVSVSITAPVAFSAMQ-GMQA---NQAPGNVTQNVTAGIAAAR 56

Query: 130 EPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           EPF  F+  + + ++   F+  A +   + +   +   D I   +L P+F ++EL  +F+
Sbjct: 57  EPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLI---VLAPAFTLTELTDAFK 113

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
           IGFL+ + F+++D+++A ++MAMG+  + PT++++P K++ F
Sbjct: 114 IGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 155


>gi|662864|gb|AAA79756.1| flagellar protein [Pseudomonas aeruginosa]
          Length = 141

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 53/84 (63%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           I T LS  P  ++++T F R IIVFSILR  +G+ S P N V++ LALF+T +VM+P  D
Sbjct: 56  IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFD 115

Query: 105 RSIEMGIQPLMNNQITETTAIQRV 128
           +     +QP +N QI    A+Q+ 
Sbjct: 116 KINSQALQPYLNEQIPAQEALQKA 139


>gi|179741303|gb|ACB86711.1| HrcR [uncultured soil bacterium]
          Length = 111

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 68/112 (60%), Gaps = 6/112 (5%)

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSF 176
            ET  I    EPF  F+  + + ++   F+  A +   + +   +   D I   +L P+F
Sbjct: 1   NETAGIAAAREPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLI---VLAPAF 57

Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
            ++EL  +F+IGFL+ + F+++D+++A ++MAMG+  + PT++++PFK++ F
Sbjct: 58  TLTELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPFKLLLF 109


>gi|207110871|ref|ZP_03245033.1| flagellar biosynthesis protein FliP [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 78

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 49/69 (71%)

Query: 80  SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139
             PP  +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ A PF  FM  N
Sbjct: 3   QTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLKN 62

Query: 140 TREKDLSLF 148
           TREKDL+LF
Sbjct: 63  TREKDLALF 71


>gi|179741043|gb|ACB86703.1| HrcR [Burkholderia phenazinium]
          Length = 134

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 76/137 (55%), Gaps = 8/137 (5%)

Query: 80  SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET--TAIQRVAEPFWVFMR 137
            VPPN+VI  +A+ ++ YVM+P   ++ +      M  Q T+          EPF  F++
Sbjct: 1   QVPPNMVINGIAVLVSLYVMAPIGMQAAQSMQGQAMAPQPTQALIQMFSAAREPFRGFLK 60

Query: 138 NNTREKDLSLFMDMAH---SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
            + +E++   FM  A          ++   D I   +L P+F +SEL  +F+IGFL+ + 
Sbjct: 61  AHAKEREKRFFMHSASIVWPKEAANNLHDTDLI---VLAPAFTLSELADAFKIGFLLYIA 117

Query: 195 FLIIDMIVATIVMAMGM 211
           F+++D+I+A +++AMG+
Sbjct: 118 FIVVDLIIANVLLAMGL 134


>gi|179741749|gb|ACB86725.1| HrcR [uncultured soil bacterium]
          Length = 122

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 67/110 (60%), Gaps = 6/110 (5%)

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMI 178
           T  I    EPF  F+  + + ++   F+  A +   + +   +   D I   +L P+F +
Sbjct: 14  TAGIAAAREPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLI---VLAPAFTL 70

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
           +EL  +F+IGFL+ + F+++D+++A ++MAMG+  + PT++++PFK++ F
Sbjct: 71  TELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPFKLLLF 120


>gi|179741968|gb|ACB86731.1| HrcR [uncultured soil bacterium]
          Length = 119

 Score = 73.6 bits (179), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 67/110 (60%), Gaps = 6/110 (5%)

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMI 178
           T  I    EPF  F+  + + ++   F+  A +   + +   +   D I   +L P+F +
Sbjct: 11  TAGIAAAREPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLI---VLAPAFTL 67

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
           +EL  +F+IGFL+ + F+++D+++A ++MAMG+  + PT++++PFK++ F
Sbjct: 68  TELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPFKLLLF 117


>gi|194350737|gb|ACF53799.1| HrcR [Erwinia psidii]
          Length = 128

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 68/103 (66%), Gaps = 6/103 (5%)

Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYR---ILIPSFMISELRRSFE 186
           EP   FM   +R  D  +   +  +S +    + ++ +  +   ++IP+F++SEL+  F+
Sbjct: 29  EPLQTFM---SRNVDPDILTHLHENSLQMWPASLSEKVNTQNLLLVIPAFVLSELQAGFK 85

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
           IGFLI +PF++ID+IV+ +++A+GM M+ P ++SLPFK++ FV
Sbjct: 86  IGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPFKLLLFV 128


>gi|194350756|gb|ACF53807.1| HrcR [Pectobacterium carotovorum subsp. carotovorum]
          Length = 127

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 69/110 (62%), Gaps = 6/110 (5%)

Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYR---ILIPSFMIS 179
           T++     P   FM +NT   D  + + +  +S R      +D +      ++IP+F++S
Sbjct: 21  TSVTNGVVPLQKFMTHNT---DPDILIHLQENSVRMWPKEMSDSVNKDNLLLVIPAFVLS 77

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
           EL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP K++ FV
Sbjct: 78  ELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPLKMLLFV 127


>gi|323178895|gb|EFZ64471.1| harpin secretion protein hrpW [Escherichia coli 1180]
          Length = 68

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 50/64 (78%)

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
            +L  +F+IGFL+ LPF+ ID+I++ I++A+GMMM+ P +IS+PFK++ F+L+ GW  L 
Sbjct: 2   GQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQKLF 61

Query: 239 ENLV 242
           E L+
Sbjct: 62  EFLL 65


>gi|179741902|gb|ACB86729.1| HrcR [uncultured soil bacterium]
          Length = 133

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 66/110 (60%), Gaps = 6/110 (5%)

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMI 178
           T  I    EPF  F+  + + ++   F+  A +   + +   +   D I   +L P+F +
Sbjct: 25  TAGIAAAREPFRTFLEAHAQSRERQFFLRSATALWPAQQGKALKDTDLI---VLAPAFTL 81

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
           +EL  +F+IGFL+ + F+++D+++A ++MAMG+  + PT++++P K++ F
Sbjct: 82  TELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 131


>gi|194350758|gb|ACF53808.1| HrcR [Pectobacterium betavasculorum]
 gi|194350760|gb|ACF53809.1| HrcR [Pectobacterium betavasculorum]
 gi|194350764|gb|ACF53811.1| HrcR [Pectobacterium carotovorum subsp. brasiliensis]
 gi|194350766|gb|ACF53812.1| HrcR [Pectobacterium wasabiae WPP163]
          Length = 127

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 73/113 (64%), Gaps = 12/113 (10%)

Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSS------HRNTDITKNDHIEYRILIPSF 176
           T++     P   FM +NT   D  + + +  +S        + +++K++ +   ++IP+F
Sbjct: 21  TSVTNGVAPLQKFMTHNT---DPDILIHLQENSVQMWPKEMSENVSKDNLL---LVIPAF 74

Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
           ++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP K++ FV
Sbjct: 75  VLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPLKMLLFV 127


>gi|213419213|ref|ZP_03352279.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 120

 Score = 72.0 bits (175), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 74/113 (65%), Gaps = 8/113 (7%)

Query: 142 EKDLSLFMDMAHSSHR---NTDITKNDHIEYR-----ILIPSFMISELRRSFEIGFLIIL 193
           +++L  F + A    +    T+  K D  E        L+P++ +SE++ +F+IGF + L
Sbjct: 4   DRELVQFFENAQLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYL 63

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           PF+++D++V+++++A+GMMM+ P +IS P K++ FV +DGW+LL + L+  ++
Sbjct: 64  PFVVVDLVVSSVLLALGMMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQYM 116


>gi|254285292|ref|ZP_04960257.1| Flagellar biosynthesis pathway, component FliP [Vibrio cholerae
           AM-19226]
 gi|71480611|gb|AAZ32233.1| VcsR2 [Vibrio cholerae non-O1/non-O139]
 gi|150424564|gb|EDN16500.1| Flagellar biosynthesis pathway, component FliP [Vibrio cholerae
           AM-19226]
          Length = 224

 Score = 71.6 bits (174), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 97/208 (46%), Gaps = 32/208 (15%)

Query: 54  ILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQP 113
           +  I  T F ++ IV +I++  +G   +PP +V+  LA  M    + P +   IE  I+P
Sbjct: 28  VFFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNGVWPQIQPGIER-IKP 86

Query: 114 LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-----------HSSHRNTDIT 162
             + Q  +    Q +         NN   K+++++  ++           H+  +   +T
Sbjct: 87  YFSQQEKQELN-QEI---------NNDLPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLT 136

Query: 163 ---------KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
                      +H  ++  I S +I +L + FE+G  + + F+ ID ++A I+  +GM M
Sbjct: 137 AIIELPFNFDKEHDTFKYFIGS-LIYDLYQGFELGLKLYIVFVSIDFLIAVILSGVGMTM 195

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENL 241
           L PT IS P K+  F   D W++L + L
Sbjct: 196 LSPTVISTPVKLAVFYFSDSWTILFKAL 223


>gi|194350721|gb|ACF53791.1| HrcR [Erwinia amylovora]
          Length = 127

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 70/112 (62%), Gaps = 10/112 (8%)

Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN-----TDITKNDHIEYRILIPSFM 177
           T++     P   FM +NT   D  + + +  +S R       D    D++   ++IP+F+
Sbjct: 21  TSVTNGVAPLQKFMTHNT---DPDILIHLQENSVRMWPKEMLDSVNKDNL--LLVIPAFV 75

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
           +SEL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP K++ FV
Sbjct: 76  LSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPLKMLLFV 127


>gi|158834403|gb|ABW81996.1| type III secretion system inner membrane component [Candidatus
           Hamiltonella defensa]
          Length = 155

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 85/152 (55%), Gaps = 5/152 (3%)

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           TC+ +F IVF ++R  +G+  +P N+ +  +AL +  +VM P + ++I  G +    +  
Sbjct: 5   TCYIKFSIVFVMVRNALGLQQIPSNMTLNGVALLLASFVMMPIV-KNIYEGYKNAQFDVR 63

Query: 120 TETTAIQRVAEPFWVFMRNNTREKD--LSLFMDMAHSSHRNTDITKNDHIEYRI--LIPS 175
             ++ I+ V      +     +  D  L+ F + A S  +  D    +  +  I  L+P+
Sbjct: 64  NLSSVIEFVENGLDGYRSYLVKYADPELTQFFEKAASDRKEEDFAGAEEEKPSIFALLPA 123

Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
           + +SE++ +F+IGF I LPF+++D+++++I++
Sbjct: 124 YALSEIKSAFKIGFYIYLPFVVVDLLISSILL 155


>gi|229515154|ref|ZP_04404614.1| surface presentation of antigens protein SpaP [Vibrio cholerae TMA
           21]
 gi|229347859|gb|EEO12818.1| surface presentation of antigens protein SpaP [Vibrio cholerae TMA
           21]
          Length = 228

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 97/208 (46%), Gaps = 32/208 (15%)

Query: 54  ILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQP 113
           +  I  T F ++ IV +I++  +G   +PP +V+  LA  M    + P +   IE  I+P
Sbjct: 32  VFFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNGVWPQIQPGIER-IKP 90

Query: 114 LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-----------HSSHRNTDIT 162
             + Q  +    Q +         NN   K+++++  ++           H+  +   +T
Sbjct: 91  YFSQQEKQELN-QEI---------NNDLPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLT 140

Query: 163 ---------KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
                      +H  ++  I S +I +L + FE+G  + + F+ ID ++A I+  +GM M
Sbjct: 141 AIIELPFNFDKEHDTFKYFIGS-LIYDLYQGFELGLKLYIVFVSIDFLIAVILSGVGMTM 199

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENL 241
           L PT IS P K+  F   D W++L + L
Sbjct: 200 LSPTVISTPVKLAVFYFSDSWTILFKAL 227


>gi|229529208|ref|ZP_04418598.1| surface presentation of antigens protein SpaP [Vibrio cholerae
           12129(1)]
 gi|229332982|gb|EEN98468.1| surface presentation of antigens protein SpaP [Vibrio cholerae
           12129(1)]
          Length = 228

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 97/208 (46%), Gaps = 32/208 (15%)

Query: 54  ILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQP 113
           +  I  T F ++ IV +I++  +G   +PP +V+  LA  M    + P +   IE  I+P
Sbjct: 32  VFFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNGVWPQIQPGIER-IKP 90

Query: 114 LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-----------HSSHRNTDIT 162
             + Q  +    Q +         NN   K+++++  ++           H+  +   +T
Sbjct: 91  YFSQQKKQELN-QEI---------NNDLPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLT 140

Query: 163 ---------KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
                      +H  ++  I S +I +L + FE+G  + + F+ ID ++A ++  +GM M
Sbjct: 141 AIIELPFNFDKEHDTFKYFIGS-LIYDLYQGFELGLKLYIVFVSIDFLIAVVLSGVGMTM 199

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENL 241
           L PT IS P K+  F   D W++L + L
Sbjct: 200 LSPTVISTPVKLAVFYFSDSWTILFKAL 227


>gi|179741815|gb|ACB86727.1| HrcR [uncultured soil bacterium]
          Length = 119

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 66/110 (60%), Gaps = 6/110 (5%)

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMI 178
           T  I    EPF  F+  + + ++   F+  A +   + +   +   D I   +L P+F +
Sbjct: 11  TAGIAAAREPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLI---VLAPAFTL 67

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
           +EL  +F+IGFL+ + F+++D+++A ++MAMG+  + PT++++P K++ F
Sbjct: 68  TELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 117


>gi|179741532|gb|ACB86718.1| HrcR [uncultured soil bacterium]
          Length = 132

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 66/110 (60%), Gaps = 6/110 (5%)

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMI 178
           T  I    EPF  F+  + + ++   F+  A +   + +   +   D I   +L P+F +
Sbjct: 24  TAGIAAAREPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLI---VLAPAFTL 80

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
           +EL  +F+IGFL+ + F+++D+++A ++MAMG+  + PT++++P K++ F
Sbjct: 81  TELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 130


>gi|330903542|gb|EGH34114.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 117

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 79/123 (64%), Gaps = 12/123 (9%)

Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHR------NTDITKNDHIEYRILIPSFMISELRR 183
           EP   FM   TR  D  +   +  ++ R          +KND +   + IP+F++SEL+ 
Sbjct: 1   EPLQRFM---TRNTDPDVVAHLLENTQRMWPKEMADQASKNDLL---LAIPAFVLSELQA 54

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
            FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP K++ FVL+ GWS L+++L  
Sbjct: 55  GFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTLSLPLKLLLFVLVSGWSRLLDSLFY 114

Query: 244 SFI 246
           S++
Sbjct: 115 SYM 117


>gi|179741560|gb|ACB86719.1| HrcR [uncultured soil bacterium]
          Length = 120

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 66/110 (60%), Gaps = 6/110 (5%)

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMI 178
           T  I    EPF  F+  + + ++   F+  A +   + +   +   D I   +L P+F +
Sbjct: 12  TAGIAAAREPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLI---VLAPAFTL 68

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
           +EL  +F+IGFL+ + F+++D+++A ++MAMG+  + PT++++P K++ F
Sbjct: 69  TELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 118


>gi|313056235|dbj|BAJ39835.1| putative type III secretion system apparatus protein VscR2 [Vibrio
           mimicus]
 gi|313056265|dbj|BAJ39850.1| putative type III secretion system apparatus protein VscR2 [Vibrio
           mimicus]
          Length = 243

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 94/203 (46%), Gaps = 22/203 (10%)

Query: 54  ILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQP 113
           I  I  T F ++ IV +I++  +G   +PP +V+  LA  M    + P +   IE  ++P
Sbjct: 47  IFFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNAVWPQIQPGIER-VKP 105

Query: 114 LMNNQITETTAIQRVAEPFWVFMRNNTREKDL-----SLFMDMAHSSHRNTDIT------ 162
             + Q       Q + + F   M  N     L     + F ++   + + TD        
Sbjct: 106 YFSQQ-----EKQELNQDFDNDMPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLSEVIEL 160

Query: 163 ----KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
                 DH  ++  + S +I +L + FE+G  + + F+ ID ++A I+  +GM ML PT 
Sbjct: 161 PFNFDKDHDTFKYFVAS-LIYDLYKGFELGLKLYIIFVSIDFLIAVILSGVGMTMLSPTV 219

Query: 219 ISLPFKVIFFVLIDGWSLLVENL 241
           IS P K+  F   D W++L + L
Sbjct: 220 ISTPVKLAVFYFSDSWTILFKAL 242


>gi|158834391|gb|ABW81990.1| type III secretion system inner membrane component [Candidatus
           Hamiltonella defensa]
 gi|158834393|gb|ABW81991.1| type III secretion system inner membrane component [Candidatus
           Hamiltonella defensa]
 gi|158834395|gb|ABW81992.1| type III secretion system inner membrane component [Candidatus
           Hamiltonella defensa]
 gi|158834397|gb|ABW81993.1| type III secretion system inner membrane component [Candidatus
           Hamiltonella defensa]
 gi|158834399|gb|ABW81994.1| type III secretion system inner membrane component [Candidatus
           Hamiltonella defensa]
 gi|158834405|gb|ABW81997.1| type III secretion system inner membrane component [Candidatus
           Hamiltonella defensa]
 gi|158834407|gb|ABW81998.1| type III secretion system inner membrane component [Candidatus
           Hamiltonella defensa]
 gi|158834423|gb|ABW82005.1| type III secretion system inner membrane component [Candidatus
           Hamiltonella defensa]
 gi|158834430|gb|ABW82008.1| type III secretion system inner membrane component [Candidatus
           Hamiltonella defensa]
          Length = 155

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 85/152 (55%), Gaps = 5/152 (3%)

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           TC+ +F IVF ++R  +G+  +P N+ +  +AL +  +VM P + ++I  G +    +  
Sbjct: 5   TCYIKFSIVFVMVRNALGLQQIPSNMTLNGVALLLASFVMMPIV-KNIYEGHKNAQFDVR 63

Query: 120 TETTAIQRVAEPFWVFMRNNTREKD--LSLFMDMAHSSHRNTDITKNDHIEYRI--LIPS 175
             ++ I+ V      +     +  D  L+ F + A S  +  D    +  +  I  L+P+
Sbjct: 64  NLSSVIEFVENGLDGYRSYLVKYADPELTQFFEKAASDRKEEDFAGAEEEKPSIFALLPA 123

Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
           + +SE++ +F+IGF I LPF+++D+++++I++
Sbjct: 124 YALSEIKSAFKIGFYIYLPFVVVDLLISSILL 155


>gi|213027551|ref|ZP_03341998.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 170

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 66/95 (69%), Gaps = 5/95 (5%)

Query: 157 RNTDITKNDHIEYR-----ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
             T+  K D  E        L+P++ +SE++ +F+IGF + LPF+++D++V+++++A+GM
Sbjct: 72  EETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALGM 131

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           MM+ P +IS P K++ FV +DGW+LL + L+  ++
Sbjct: 132 MMMSPVTISTPIKLVLFVALDGWTLLSKGLILQYM 166


>gi|179742649|gb|ACB86742.1| HrcR [uncultured soil bacterium]
          Length = 145

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 79/145 (54%), Gaps = 11/145 (7%)

Query: 89  SLALFMTFYVMSP---TLDRSIEMGIQPLMNNQITETTAIQRVA--EPFWVFMRNNTREK 143
            +A+ ++ Y+++P        IE   Q      IT+T +   +A  EP+  F+  + + +
Sbjct: 1   GIAIIVSVYILAPIGFAAMHGIETSQQNGQGGNITQTVSAGLIAAGEPYRAFLAAHAQSR 60

Query: 144 DLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
           +   F+  A +     +   +   D I   +L P+F ++EL  +F+IGFL+ + F+++D+
Sbjct: 61  ERQFFLRSAAALWPPQQARALKDTDLI---VLAPAFTMTELTDAFKIGFLLYIGFIVVDL 117

Query: 201 IVATIVMAMGMMMLPPTSISLPFKV 225
           ++A ++MAMG+  + PT++++P   
Sbjct: 118 VIANVLMAMGLNQVQPTNVAIPLSC 142


>gi|262274290|ref|ZP_06052101.1| surface presentation of antigens protein SpaP [Grimontia hollisae
           CIP 101886]
 gi|262220853|gb|EEY72167.1| surface presentation of antigens protein SpaP [Grimontia hollisae
           CIP 101886]
          Length = 224

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 93/194 (47%), Gaps = 15/194 (7%)

Query: 61  CFPRFI---IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           CF  F+   IV +I++  +G   +PP +V+  LA  M    + P L   IE  ++P  + 
Sbjct: 32  CFSGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNSIWPQLQPGIER-VEPYFSQ 90

Query: 118 QITETTAIQRVAE-PFWVFMR---NNTREKDLSLFMDMAHSSHRNTDIT------KNDHI 167
           Q  E    Q   + P  V M    ++  E    +  +    + + T++         +H 
Sbjct: 91  QTQEELNKQIDQDLPKGVTMYTLVSHWAEFFPEVLENAKQKTEKLTEVITLPFNFDQEHD 150

Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227
            ++  I S +I +L + FE+G  + + F+ ID ++A I+  +GM ML PT IS P K+  
Sbjct: 151 TFKYFIGS-LIWDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVISTPVKLAV 209

Query: 228 FVLIDGWSLLVENL 241
           F   D W++L + L
Sbjct: 210 FYFSDSWTILFKAL 223


>gi|158834401|gb|ABW81995.1| type III secretion system inner membrane component [Candidatus
           Hamiltonella defensa]
 gi|158834409|gb|ABW81999.1| type III secretion system inner membrane component [Candidatus
           Hamiltonella defensa]
 gi|158834411|gb|ABW82000.1| type III secretion system inner membrane component [Candidatus
           Hamiltonella defensa]
 gi|158834413|gb|ABW82001.1| type III secretion system inner membrane component [Candidatus
           Hamiltonella defensa]
 gi|158834415|gb|ABW82002.1| type III secretion system inner membrane component [Candidatus
           Hamiltonella defensa]
 gi|158834418|gb|ABW82003.1| type III secretion system inner membrane component [Candidatus
           Hamiltonella defensa]
 gi|158834420|gb|ABW82004.1| type III secretion system inner membrane component [Candidatus
           Hamiltonella defensa]
 gi|158834425|gb|ABW82006.1| type III secretion system inner membrane component [Candidatus
           Hamiltonella defensa]
 gi|158834427|gb|ABW82007.1| type III secretion system inner membrane component [Candidatus
           Hamiltonella defensa]
          Length = 155

 Score = 70.1 bits (170), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 85/152 (55%), Gaps = 5/152 (3%)

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           TC+ +F IVF ++R  +G+  +P N+ +  +AL +  +VM P + ++I  G +    +  
Sbjct: 5   TCYIKFSIVFVMVRNALGLQQIPSNMTLNGVALLLASFVMMPIV-KNIYEGHKNAQFDVR 63

Query: 120 TETTAIQRVAEPFWVFMRNNTREKD--LSLFMDMAHSSHRNTDITKNDHIEYRI--LIPS 175
             ++ I+ V      +     +  D  L+ F + A S  +  D    +  +  I  L+P+
Sbjct: 64  NLSSVIEFVENGLDGYRSYLVKYADPELTQFFEKAASDRKEEDFVGAEEEKPSIFALLPA 123

Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
           + +SE++ +F+IGF I LPF+++D+++++I++
Sbjct: 124 YALSEIKSAFKIGFYIYLPFVVVDLLISSILL 155


>gi|179741369|gb|ACB86713.1| HrcR [uncultured soil bacterium]
          Length = 120

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 65/110 (59%), Gaps = 6/110 (5%)

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMI 178
           T  I    EPF  F+  + + ++   F+  A +   + +   +   D I   +L P+F +
Sbjct: 12  TAGIAAAREPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLI---VLAPAFTL 68

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
           +EL  +F+IGFL+ + F+++D+++A ++MAMG+    PT++++P K++ F
Sbjct: 69  TELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQGQPTNVAIPLKLLLF 118


>gi|179742161|gb|ACB86735.1| HrcR [uncultured soil bacterium]
          Length = 112

 Score = 69.3 bits (168), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 61/101 (60%)

Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
           V EP   FM  NT    ++  +D            +    +  + +P+F++SEL+  F+I
Sbjct: 10  VIEPLQRFMTRNTDPDVIAHLLDNTQRMWPKDMADQASKSDLLLAVPAFVLSELQAGFQI 69

Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
           GFLI +PF++ID+I + +++A+GM ++ P +ISLPFK++ F
Sbjct: 70  GFLIYIPFIVIDLIDSNLLLALGMQIVFPMTISLPFKLLLF 110


>gi|153836107|ref|ZP_01988774.1| VcsR2 [Vibrio parahaemolyticus AQ3810]
 gi|149750861|gb|EDM61606.1| VcsR2 [Vibrio parahaemolyticus AQ3810]
          Length = 224

 Score = 68.6 bits (166), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 95/200 (47%), Gaps = 16/200 (8%)

Query: 54  ILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQP 113
           +  I  T F ++ IV +I++  +G   +PP +V+  LA  M    + P +   IE  ++P
Sbjct: 28  VFFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNAVWPQIQPGIER-VKP 86

Query: 114 LMNNQITETTAIQRVAE---PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK------- 163
             + Q  E   + R  +   P  V M +   E        + H+  +   +++       
Sbjct: 87  YFSQQ--EKQELNRDVDNDMPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLSEVIELSFN 144

Query: 164 --NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
              +H  ++  + S +I +L + FE+G  + + F+ ID ++A I+  +GM ML PT IS 
Sbjct: 145 FDKEHDTFKYFVGS-LIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVIST 203

Query: 222 PFKVIFFVLIDGWSLLVENL 241
           P K+  F   D W++L + L
Sbjct: 204 PVKLAVFYFSDSWTILFKAL 223


>gi|121592127|gb|ABD36816.1| flagellar biosynthesis protein FliP [Pseudomonas fluorescens]
          Length = 55

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/50 (62%), Positives = 42/50 (84%)

Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LIID++VA+++MAMGMMML P  ISLPFK++ FVL+DGW+L++  L  SF
Sbjct: 1   LIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLASSF 50


>gi|75906098|gb|ABA29440.1| putative type III secretion system protein [Candidatus Hamiltonella
           defensa]
          Length = 97

 Score = 67.8 bits (164), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/75 (49%), Positives = 59/75 (78%)

Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230
           IL+P+F +S+L  +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK++ F+L
Sbjct: 22  ILMPAFTVSQLIEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMMSPMTISLPFKILIFLL 81

Query: 231 IDGWSLLVENLVKSF 245
           + GW +++  L  S+
Sbjct: 82  VGGWDMILGQLAGSY 96


>gi|313056253|dbj|BAJ39844.1| putative type III secretion system apparatus protein VscR2 [Vibrio
           mimicus]
          Length = 243

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 96/202 (47%), Gaps = 16/202 (7%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           + +  I  T F ++ IV +I++  +G   +PP +V+  LA  M    + P +   IE  +
Sbjct: 45  SAVFFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNAVWPQVQPGIER-V 103

Query: 112 QPLMNNQITETTAIQRVAE---PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK----- 163
           +P  + Q  E   + +  +   P  V M +   E        + H+  +   +++     
Sbjct: 104 KPYFSQQ--EKQELNQDVDNDMPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLSEVIELP 161

Query: 164 ----NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                +H  ++  + S +I +L + FE+G  + + F+ ID ++A I+  +GM ML PT I
Sbjct: 162 FNFDKEHDTFKYFVGS-LIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVI 220

Query: 220 SLPFKVIFFVLIDGWSLLVENL 241
           S P K+  F   D W++L + L
Sbjct: 221 STPVKLAVFYFSDSWTILFKAL 242


>gi|313056229|dbj|BAJ39832.1| putative type III secretion system apparatus protein VscR2 [Vibrio
           mimicus]
 gi|313056247|dbj|BAJ39841.1| putative type III secretion system apparatus protein VscR2 [Vibrio
           mimicus]
 gi|313056259|dbj|BAJ39847.1| putative type III secretion system apparatus protein VscR2 [Vibrio
           mimicus]
 gi|313056271|dbj|BAJ39853.1| putative type III secretion system apparatus protein VscR2 [Vibrio
           mimicus]
          Length = 243

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 95/200 (47%), Gaps = 16/200 (8%)

Query: 54  ILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQP 113
           +  I  T F ++ IV +I++  +G   +PP +V+  LA  M    + P +   IE  ++P
Sbjct: 47  VFFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNAVWPQIQPGIER-VKP 105

Query: 114 LMNNQITETTAIQRVAE---PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK------- 163
             + Q  E   + +  +   P  V M +   E        + H+  +   +++       
Sbjct: 106 YFSQQ--EKQELNQDVDNDMPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLSEVIELPFN 163

Query: 164 --NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
              +H  ++  + S +I +L + FE+G  + + F+ ID ++A I+  +GM ML PT IS 
Sbjct: 164 FDKEHDTFKYFVGS-LIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVIST 222

Query: 222 PFKVIFFVLIDGWSLLVENL 241
           P K+  F   D W++L + L
Sbjct: 223 PVKLAVFYFSDSWTILFKAL 242


>gi|28901197|ref|NP_800852.1| type III secretion system protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|28809710|dbj|BAC62685.1| putative Type III secretion protein Spa24 [Vibrio parahaemolyticus
           RIMD 2210633]
          Length = 243

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 95/200 (47%), Gaps = 16/200 (8%)

Query: 54  ILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQP 113
           +  I  T F ++ IV +I++  +G   +PP +V+  LA  M    + P +   IE  ++P
Sbjct: 47  VFFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNAVWPQIQPGIER-VKP 105

Query: 114 LMNNQITETTAIQRVAE---PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK------- 163
             + Q  E   + +  +   P  V M +   E        + H+  +   +++       
Sbjct: 106 YFSQQ--EKQELNQDVDNDMPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLSEVIELPFN 163

Query: 164 --NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
              +H  ++  + S +I +L + FE+G  + + F+ ID ++A I+  +GM ML PT IS 
Sbjct: 164 FDKEHDTFKYFVGS-LIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVIST 222

Query: 222 PFKVIFFVLIDGWSLLVENL 241
           P K+  F   D W++L + L
Sbjct: 223 PVKLAVFYFSDSWTILFKAL 242


>gi|260362756|ref|ZP_05775625.1| type III secretion system protein [Vibrio parahaemolyticus K5030]
 gi|260880044|ref|ZP_05892399.1| type III secretion system protein [Vibrio parahaemolyticus AN-5034]
 gi|260895161|ref|ZP_05903657.1| type III secretion system protein [Vibrio parahaemolyticus
           Peru-466]
 gi|308085658|gb|EFO35353.1| type III secretion system protein [Vibrio parahaemolyticus
           Peru-466]
 gi|308092712|gb|EFO42407.1| type III secretion system protein [Vibrio parahaemolyticus AN-5034]
 gi|308111991|gb|EFO49531.1| type III secretion system protein [Vibrio parahaemolyticus K5030]
          Length = 224

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 95/200 (47%), Gaps = 16/200 (8%)

Query: 54  ILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQP 113
           +  I  T F ++ IV +I++  +G   +PP +V+  LA  M    + P +   IE  ++P
Sbjct: 28  VFFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNAVWPQIQPGIER-VKP 86

Query: 114 LMNNQITETTAIQRVAE---PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK------- 163
             + Q  E   + +  +   P  V M +   E        + H+  +   +++       
Sbjct: 87  YFSQQ--EKQELNQDVDNDMPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLSEVIELPFN 144

Query: 164 --NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
              +H  ++  + S +I +L + FE+G  + + F+ ID ++A I+  +GM ML PT IS 
Sbjct: 145 FDKEHDTFKYFVGS-LIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVIST 203

Query: 222 PFKVIFFVLIDGWSLLVENL 241
           P K+  F   D W++L + L
Sbjct: 204 PVKLAVFYFSDSWTILFKAL 223


>gi|313056277|dbj|BAJ39856.1| putative type III secretion system apparatus protein VscR2 [Vibrio
           mimicus]
          Length = 243

 Score = 66.6 bits (161), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 95/200 (47%), Gaps = 16/200 (8%)

Query: 54  ILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQP 113
           +  I  T F ++ IV +I++  +G   +PP +V+  LA  M    + P +   IE  ++P
Sbjct: 47  VFFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNAVWPQIQPGIER-VKP 105

Query: 114 LMNNQITETTAIQRVAE---PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK------- 163
             + Q  E   + +  +   P  V M +   E        + H+  +   +++       
Sbjct: 106 YFSQQ--EKQELNQDIDNDMPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLSEVIELPFN 163

Query: 164 --NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
              +H  ++  + S +I +L + FE+G  + + F+ ID ++A I+  +GM ML PT IS 
Sbjct: 164 FDKEHDTFKYFVGS-LIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVIST 222

Query: 222 PFKVIFFVLIDGWSLLVENL 241
           P K+  F   D W++L + L
Sbjct: 223 PVKLAVFYFSDSWTILFKAL 242


>gi|194350768|gb|ACF53813.1| HrcR [Pectobacterium atrosepticum SCRI1043]
          Length = 121

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 64/103 (62%), Gaps = 6/103 (5%)

Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYR---ILIPSFMIS 179
           T++     P   FM +NT   D  + + +  +S R      +D +      ++IP+F++S
Sbjct: 21  TSVTNGVAPLQKFMTHNT---DPDILIHLQENSVRMWPKEMSDSVNKDNLLLVIPAFVLS 77

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
           EL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP
Sbjct: 78  ELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLP 120


>gi|194350762|gb|ACF53810.1| HrcR [Pectobacterium carotovorum subsp. brasiliensis]
          Length = 121

 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 68/107 (63%), Gaps = 12/107 (11%)

Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSS------HRNTDITKNDHIEYRILIPSF 176
           T++     P   FM +NT   D  + + +  +S        + +++K++ +   ++IP+F
Sbjct: 21  TSVTNGVAPLQKFMTHNT---DPDILIHLQENSVQMWPKEMSENVSKDNLL---LVIPAF 74

Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
           ++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP 
Sbjct: 75  VLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPL 121


>gi|145207712|emb|CAJ90702.1| putative RhcR protein [Bradyrhizobium japonicum]
          Length = 57

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/52 (61%), Positives = 40/52 (76%)

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           PF+ ID+IV TI+MAMGM M+ PT IS+PFK+  FV IDGWS L+  LV S+
Sbjct: 1   PFITIDLIVTTILMAMGMSMVSPTVISVPFKLFLFVTIDGWSRLMHGLVLSY 52


>gi|194350731|gb|ACF53796.1| HrcR [Brenneria lupinicola]
          Length = 125

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 72/126 (57%), Gaps = 7/126 (5%)

Query: 105 RSIEMGIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163
           R      +PL    IT   A +    EP   FM   +R  D  +   +  +S +    + 
Sbjct: 3   RCFRTQEKPLDMTDITSLQASVTYGQEPLQTFM---SRNVDPDILTHLHENSLQMWPASL 59

Query: 164 NDHIEYR---ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
           ++ +  +   ++IP+F++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++S
Sbjct: 60  SEKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLS 119

Query: 221 LPFKVI 226
           LP  ++
Sbjct: 120 LPLPLL 125


>gi|194350741|gb|ACF53801.1| HrcR [Erwinia tracheiphila]
          Length = 128

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 72/114 (63%), Gaps = 11/114 (9%)

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN-----TDITKNDHIEYRILIPS 175
           ETTA   + EP   FM  NT   D  +   +  +S R      ++    D+I   ++IP+
Sbjct: 21  ETTATHGI-EPLQKFMSRNT---DPDILTHLHENSIRMWPAAMSEKATTDNI--LLVIPA 74

Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
           F++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ PT++ LP K++ FV
Sbjct: 75  FVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPTTLWLPLKLLLFV 128


>gi|194350739|gb|ACF53800.1| HrcR [Erwinia tracheiphila]
 gi|194350743|gb|ACF53802.1| HrcR [Brenneria quercina]
          Length = 128

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 73/114 (64%), Gaps = 11/114 (9%)

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN-----TDITKNDHIEYRILIPS 175
           ETTA   + EP   FM  NT   D  +   +  +S R      ++    D+I   ++IP+
Sbjct: 21  ETTATHGI-EPLQKFMSRNT---DPDILTHLHENSIRMWPAAMSEKATTDNI--LLVIPA 74

Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
           F++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ PT++SLP K++ FV
Sbjct: 75  FVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPTTLSLPLKLLLFV 128


>gi|238799426|ref|ZP_04642855.1| Flagellar biosynthetic protein FliP [Yersinia mollaretii ATCC
           43969]
 gi|238716730|gb|EEQ08617.1| Flagellar biosynthetic protein FliP [Yersinia mollaretii ATCC
           43969]
          Length = 46

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/44 (61%), Positives = 39/44 (88%)

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +A+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 1   MASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 44


>gi|194350745|gb|ACF53803.1| HrcR [Brenneria quercina]
 gi|194350747|gb|ACF53804.1| HrcR [Brenneria nigrifluens]
          Length = 128

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 73/114 (64%), Gaps = 11/114 (9%)

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN-----TDITKNDHIEYRILIPS 175
           ETTA   + EP   FM  NT   D  +   +  +S R      ++    D+I   ++IP+
Sbjct: 21  ETTATHGI-EPLQKFMSRNT---DPDILTHLHENSIRMWPPAMSEKATTDNI--LLVIPA 74

Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
           F++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ PT++SLP K++ FV
Sbjct: 75  FVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPTTLSLPLKLLLFV 128


>gi|119391678|emb|CAJ46463.1| RhcR protein [Bradyrhizobium japonicum]
 gi|145207704|emb|CAJ90696.1| putative RhcR protein [Bradyrhizobium sp. MSDJ 5327]
 gi|145207708|emb|CAJ90699.1| putative RhcR protein [Bradyrhizobium japonicum]
          Length = 57

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/52 (59%), Positives = 40/52 (76%)

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           P ++ID+IV TI+MAMGM M+ PT IS+PFK+  FV IDGWS L+  LV S+
Sbjct: 1   PLIVIDLIVTTILMAMGMSMVSPTVISVPFKLFLFVTIDGWSRLMHGLVLSY 52


>gi|308126175|ref|ZP_05908255.2| FliP family protein [Vibrio parahaemolyticus AQ4037]
 gi|308107367|gb|EFO44907.1| FliP family protein [Vibrio parahaemolyticus AQ4037]
          Length = 278

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 98/204 (48%), Gaps = 30/204 (14%)

Query: 61  CFPRFI---IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           CF  F+   IV +I++  +G   +PP +V+  LA  M    + P +   IE  ++P  ++
Sbjct: 81  CFSGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNSVWPEVKPGIER-VKPYFSS 139

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFM----------DMAHSSHRNT-------D 160
           Q     ++   A      + ++   K++++F           ++  ++   T       D
Sbjct: 140 QHRLEDSLDTSAS-----VSSDELPKNVTMFTLVSNLFEFFPELLKTAEDKTNKLTSLID 194

Query: 161 ITKN---DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
           I  N   ++  ++  I S +I +L + FE+G  + + F+ ID ++A I+  +GM ML PT
Sbjct: 195 IPLNFDEENQTFKFFIGS-LIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPT 253

Query: 218 SISLPFKVIFFVLIDGWSLLVENL 241
            IS P K+  F   D W++L + L
Sbjct: 254 VISTPVKLAVFYFSDSWTILFKAL 277


>gi|221271465|dbj|BAH15017.1| putative type III secretion system apparatus protein VscR2 [Vibrio
           parahaemolyticus]
          Length = 229

 Score = 63.2 bits (152), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 97/204 (47%), Gaps = 30/204 (14%)

Query: 61  CFPRFI---IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           CF  F+   IV +I++  +G   +PP +V+  LA  M    + P +   IE  ++P  ++
Sbjct: 32  CFSGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNSVWPEVKPGIER-VKPYFSS 90

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFM----------DMAHSSHRNT-------D 160
           Q     ++   A      + +    K++++F           ++  ++   T       D
Sbjct: 91  QYRLEDSLDPSAS-----VSSEELPKNVTMFTLVSNLFEFFPELLKTAEDKTNKLTSLID 145

Query: 161 ITKN---DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
           I  N   ++  ++  I S +I +L + FE+G  + + F+ ID ++A I+  +GM ML PT
Sbjct: 146 IPLNFDEENQTFKFFIGS-LIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPT 204

Query: 218 SISLPFKVIFFVLIDGWSLLVENL 241
            IS P K+  F   D W++L + L
Sbjct: 205 VISTPVKLAVFYFSDSWTILFKAL 228


>gi|328469627|gb|EGF40563.1| type III secretion system protein YscR [Vibrio parahaemolyticus
           10329]
          Length = 229

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 94/204 (46%), Gaps = 30/204 (14%)

Query: 61  CFPRFI---IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           CF  F+   IV +I++  +G   +PP +V+  LA  M    + P +   IE  ++P  ++
Sbjct: 32  CFSGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNSVWPEVKPGIER-VKPYFSS 90

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFM-----------------DMAHSSHRNTD 160
           Q     +++  A      + +    K++++F                  D  +      D
Sbjct: 91  QHRLEDSLEPSAS-----VSSEELPKNVTMFTLVSNLFEFFPEVLKIAEDKTNKLTSEID 145

Query: 161 IT---KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
           I      ++  ++  I S +I +L + FE+G  + + F+ ID ++A I+  +GM ML PT
Sbjct: 146 IPLHFDEENQTFKFFIGS-LIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPT 204

Query: 218 SISLPFKVIFFVLIDGWSLLVENL 241
            IS P K+  F   D W++L + L
Sbjct: 205 VISTPVKLAVFYFSDSWTILFKAL 228


>gi|323163025|gb|EFZ48858.1| harpin secretion protein hrpW [Escherichia coli E128010]
          Length = 149

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 67/125 (53%), Gaps = 8/125 (6%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP-TL 103
           +F +LS+ PI +++ T F +  IV  IL+  +G+  VPPN+ + S++L +T ++MSP  L
Sbjct: 13  VFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIIL 72

Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
             +  +  +P+     T++   Q+V E    P+  F+  NT ++++  F   A     N 
Sbjct: 73  QINDNISQEPI---NYTDSDFFQKVDEKILSPYRGFLEKNTEKENVEFFERAAQKKLGNE 129

Query: 160 DITKN 164
            I K 
Sbjct: 130 TILKK 134


>gi|119391682|emb|CAJ46466.1| RhcR protein [Bradyrhizobium liaoningense]
 gi|145207716|emb|CAJ90705.1| putative RhcR protein [Bradyrhizobium japonicum]
          Length = 57

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/52 (59%), Positives = 39/52 (75%)

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           P + ID+IV TI+MAMGM M+ PT IS+PFK+  FV IDGWS L+  LV S+
Sbjct: 1   PLITIDLIVTTILMAMGMSMVSPTVISVPFKLFLFVTIDGWSRLMHGLVLSY 52


>gi|153212098|ref|ZP_01947915.1| VcsR2 [Vibrio cholerae 1587]
 gi|153827997|ref|ZP_01980664.1| VcsR2 [Vibrio cholerae 623-39]
 gi|124116894|gb|EAY35714.1| VcsR2 [Vibrio cholerae 1587]
 gi|148876578|gb|EDL74713.1| VcsR2 [Vibrio cholerae 623-39]
          Length = 229

 Score = 62.0 bits (149), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 96/199 (48%), Gaps = 20/199 (10%)

Query: 61  CFPRFI---IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           CF  F+   IV +I++  +G   +PP +V+  LA  M    + P +   +E  ++P  ++
Sbjct: 32  CFSGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNSVWPEVKPGLER-VKPYFSS 90

Query: 118 Q------ITETTAIQRVAEPFWVFM---RNNTREKDLSLFMDMAHSSHRNTDITK----- 163
           Q      I  + +I     P  V M    +N  E    L  +    +++ T + +     
Sbjct: 91  QHRLEDSIDTSASISSEELPKNVTMFTLVSNLFEFFPELLKNAEDKTNKLTSLIEIPLSF 150

Query: 164 -NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
             ++  ++  I S +I +L + FE+G  + + F+ ID ++A I+  +G+ ML PT IS P
Sbjct: 151 DEENQTFKFFIGS-LIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGITMLSPTVISTP 209

Query: 223 FKVIFFVLIDGWSLLVENL 241
            K+  F   D W++L + L
Sbjct: 210 VKLAVFYFSDSWTILFKAL 228


>gi|19880031|gb|AAM00229.1|AF358871_1 SctR [Burkholderia pseudomallei]
          Length = 133

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 75/129 (58%), Gaps = 2/129 (1%)

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTRE 142
           +V+  +A+ ++ YVM+P   ++ +   +  + +Q ++    A+    EPF  F+  +T E
Sbjct: 1   MVLNGIAILVSLYVMAPIGMQAAKALDEQQLASQSSQAIIQALGSAREPFRSFLEKHTPE 60

Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202
           ++   F+  A       + +  +  +  +L P+F +SEL  +F+IGFL+ + F+I+D+++
Sbjct: 61  REKRFFIRSASVIWPKEEASLLNERDLIVLAPAFALSELTDAFKIGFLLYIVFIIVDLVI 120

Query: 203 ATIVMAMGM 211
           A +++A+G+
Sbjct: 121 ANVLLALGL 129


>gi|253990947|ref|YP_003042303.1| type III secretion system protein [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782397|emb|CAQ85561.1| Putative Type III secretion flagellar biosynthesis inner membrane
           protein [Photorhabdus asymbiotica]
          Length = 236

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 101/211 (47%), Gaps = 23/211 (10%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           + +  I  + F ++ IV +IL+  MG   +PP++V+  LA  +    +   L+  +E  I
Sbjct: 26  SAVFFICFSGFVKYNIVLNILKNAMGTQQIPPSIVVNLLAALLALNSIWGDLEPGLER-I 84

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF-----MD------MAHSSHRNTD 160
           +P   +   ++  I        +     ++  D++++     +D      +A +  ++ +
Sbjct: 85  KPYFTDTYDKSIPIIDPISGLGLSNNELSKSGDVTMYHLVSRIDEYFPEIIARAERKSLE 144

Query: 161 ITK--------NDHIEYRILIP--SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           + K        ND     +L P    +I +L + FE+G  + + F+ ID ++A ++  +G
Sbjct: 145 LEKLFTLPIAFNDG-SGSVLKPLLGGLILDLYKGFELGIKLYMIFVSIDFLIAVVLSGVG 203

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
           M ML PT IS+P K+  F   DGW++L   L
Sbjct: 204 MSMLSPTVISIPIKLAVFYFSDGWTILFNTL 234


>gi|304412098|ref|ZP_07393708.1| type III secretion system inner membrane P protein [Shewanella
           baltica OS183]
 gi|307305993|ref|ZP_07585739.1| type III secretion system inner membrane P protein [Shewanella
           baltica BA175]
 gi|304349648|gb|EFM14056.1| type III secretion system inner membrane P protein [Shewanella
           baltica OS183]
 gi|306911486|gb|EFN41912.1| type III secretion system inner membrane P protein [Shewanella
           baltica BA175]
          Length = 231

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 96/206 (46%), Gaps = 21/206 (10%)

Query: 54  ILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEM---- 109
           +  I  + + ++ IV +I++  +G   +PP +V+  LA  M    + P +   +E     
Sbjct: 28  VFFICFSGYVKYNIVLNIIKNAVGTQQIPPTIVVNLLAALMALNSIWPDIKPGLERVKPY 87

Query: 110 ---GIQPLMNNQITETTAIQRVAEPFWV---FMRNNTREKDLSLFMDMAHSSHRNTDI-- 161
               I   +N  + +++++    +P  V   ++ +N  E    L       ++  T+I  
Sbjct: 88  FIEQINGEINPDVLQSSSLFEDKKPEQVTMYYLVSNVFEFFPELLARAQRKTNELTEIID 147

Query: 162 ------TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
                 + +D ++Y +     +I +L + FE G  + + F+ ID ++A I+  +GM ML 
Sbjct: 148 IPLNFDSGSDTLKYFL---GNLILDLYQGFEFGLKLYMIFVSIDFLIAVILSGVGMTMLS 204

Query: 216 PTSISLPFKVIFFVLIDGWSLLVENL 241
           PT IS P K+  F   D W++L   L
Sbjct: 205 PTVISTPVKLAVFYFSDSWTILFRAL 230


>gi|313056241|dbj|BAJ39838.1| putative type III secretion system apparatus protein VscR2 [Vibrio
           mimicus]
          Length = 229

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 95/204 (46%), Gaps = 30/204 (14%)

Query: 61  CFPRFI---IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           CF  F+   IV +I++  +G   +PP +V+  LA  M    + P +   +E  ++P  ++
Sbjct: 32  CFSGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNSVWPEVKPGLER-VKPYFSS 90

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH-----------SSHRNTDITK--- 163
           Q     ++   A      + +    K++++F  +++           +  +   +T    
Sbjct: 91  QHRLEDSLDTSAS-----VSSEELPKNVTMFTLVSNLFDFFPELLKTAEDKTNKLTSLIE 145

Query: 164 ------NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
                  +   ++  I S +I +L + FE+G  + + F+ ID ++A I+  +GM ML PT
Sbjct: 146 IPLNFDEEDQTFKFFIGS-LIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPT 204

Query: 218 SISLPFKVIFFVLIDGWSLLVENL 241
            IS P K+  F   D W++L + L
Sbjct: 205 VISTPVKLAVFYFSDSWTILFKAL 228


>gi|194350749|gb|ACF53805.1| HrcR [Brenneria nigrifluens]
          Length = 128

 Score = 60.1 bits (144), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 67/117 (57%), Gaps = 9/117 (7%)

Query: 105 RSIEMGIQPLMNNQIT--ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT 162
           R       PL  N I+  + +  Q +A P   FM  NT   D  +   +  +S R    +
Sbjct: 3   RCFRTQENPLNMNDISVLQESVTQGLA-PLQTFMSRNT---DPDILTHLQENSLRMWPPS 58

Query: 163 KNDHIEYR---ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
            ++ +  +   ++IP+F++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ P
Sbjct: 59  LSEKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAP 115


>gi|323267197|gb|EGA50682.1| type III secretion system protein YscR [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
          Length = 109

 Score = 59.7 bits (143), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 12/94 (12%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++  GI  +LSI P++++M T F +  +VFSILR  +G+  VPPN+ +  LAL ++ ++M
Sbjct: 8   LQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIM 67

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133
            PTL    E                +Q    PFW
Sbjct: 68  GPTLLAVKE------------RWHPVQVAGAPFW 89


>gi|179741848|gb|ACB86728.1| HrcR [uncultured soil bacterium]
          Length = 93

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 45/57 (78%)

Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227
           +L P+F ++EL  +F+IGFL+ + F+++D+++A ++MAMG+  + PT++++P K+ F
Sbjct: 34  VLAPAFTLTELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLPF 90


>gi|194350725|gb|ACF53793.1| HrcR [Erwinia mallotivora]
          Length = 128

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 64/105 (60%), Gaps = 10/105 (9%)

Query: 119 ITETTAIQRVA----EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYR---I 171
           +T+ T++Q       EP   FM   +R  D  +   +  +S R    + ++ +  +   +
Sbjct: 14  MTDITSLQASVTYGLEPLQTFM---SRNVDPDILTHLHENSLRMWPASLSEKVNTQNLLL 70

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
           +IP+F++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ P
Sbjct: 71  VIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAP 115


>gi|321399649|emb|CBJ44652.1| putative type III secretion system protein HcrR [Pseudomonas sp.
           MTR-48-522]
          Length = 55

 Score = 59.3 bits (142), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 45/55 (81%)

Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           ++PF++ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GW+ L+++L  S++
Sbjct: 1   VIPFIVIDLIVSNLLLALGMQMVAPMTISLPLKLLIFVLVQGWTQLLDSLFYSYL 55


>gi|51587318|emb|CAE53693.1| putative HrcR [Pseudomonas fluorescens]
 gi|321399617|emb|CBJ44628.1| putative type III secretion system protein HcrR [Pseudomonas sp.
           MTE-48-102]
 gi|321399621|emb|CBJ44631.1| putative type III secretion system protein HcrR [Pseudomonas sp.
           MTE-48-104]
 gi|321399641|emb|CBJ44646.1| putative type III secretion system protein HcrR [Pseudomonas sp.
           MTR-25-521]
 gi|321399645|emb|CBJ44649.1| putative type III secretion system protein HcrR [Pseudomonas sp.
           MTR-48-521]
 gi|321399657|emb|CBJ44658.1| putative type III secretion system protein HcrR [Pseudomonas sp.
           MTR-J5-521]
 gi|321399661|emb|CBJ44661.1| putative type III secretion system protein HcrR [Pseudomonas sp.
           MTR-J5-522]
 gi|321399665|emb|CBJ44664.1| putative type III secretion system protein HcrR [Pseudomonas sp.
           MTR-J5-621]
 gi|321399669|emb|CBJ44667.1| putative type III secretion system protein HcrR [Pseudomonas sp.
           MTR-J5-622]
 gi|321399673|emb|CBJ44670.1| putative type III secretion system protein HcrR [Pseudomonas sp.
           MTR-J5-623]
          Length = 53

 Score = 58.5 bits (140), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 43/53 (81%)

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           PF++ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GW+ L+++L  S++
Sbjct: 1   PFIVIDLIVSNLLLALGMQMVAPMTISLPLKLLIFVLVQGWTQLLDSLFYSYL 53


>gi|194350727|gb|ACF53794.1| HrcR [Erwinia rhapontici]
 gi|194350729|gb|ACF53795.1| HrcR [Erwinia rhapontici]
 gi|194350735|gb|ACF53798.1| HrcR [Erwinia psidii]
 gi|194350771|gb|ACF53814.1| HrcR [Erwinia chrysanthemi]
          Length = 128

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 64/105 (60%), Gaps = 10/105 (9%)

Query: 119 ITETTAIQRVA----EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYR---I 171
           +T+ T++Q       EP   FM   +R  D  +   +  +S +    + ++ +  +   +
Sbjct: 14  MTDITSLQASVTYGLEPLQTFM---SRNVDPDILTHLHENSLQMWPASLSEKVNTQNLLL 70

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
           +IP+F++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ P
Sbjct: 71  VIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAP 115


>gi|194350723|gb|ACF53792.1| HrcR [Erwinia mallotivora]
          Length = 127

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 64/107 (59%), Gaps = 10/107 (9%)

Query: 119 ITETTAIQRVA----EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYR---I 171
           +T+ T++Q       EP   FM   +R  D  +   +  +S R    + ++ +  +   +
Sbjct: 14  MTDITSLQASVTYGLEPLQTFM---SRNVDPDILTHLHENSLRMWPASLSEKVNTQNLLL 70

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
           +IP+F++SEL+  F+IGFLI +PF++ID+IV+ +++A GM M+ P +
Sbjct: 71  VIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVMLARGMQMVAPQT 117


>gi|194350733|gb|ACF53797.1| HrcR [Brenneria lupinicola]
          Length = 128

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 64/105 (60%), Gaps = 10/105 (9%)

Query: 119 ITETTAIQRVA----EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYR---I 171
           +T+ T++Q       EP   FM   +R  D  +   +  +S +    + ++ +  +   +
Sbjct: 14  MTDITSLQASVTYGLEPLQTFM---SRNVDPDILTHLHENSLQMWPASLSEKVNTQNLLL 70

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
           +IP+F++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ P
Sbjct: 71  VIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAP 115


>gi|51587274|emb|CAE53660.1| putative HrcR [Pseudomonas fluorescens bv. V]
 gi|51587278|emb|CAE53663.1| putative HrcR [Pseudomonas fluorescens bv. V]
 gi|51587286|emb|CAE53669.1| putative HrcR protein [Pseudomonas fluorescens bv. V]
 gi|51587290|emb|CAE53672.1| putative HrcR protein [Pseudomonas fluorescens]
 gi|51587314|emb|CAE53690.1| putative HrcR [Pseudomonas fluorescens bv. V]
          Length = 53

 Score = 57.8 bits (138), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 43/53 (81%)

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           PF++ID+IV+ +++A+GM M+ P +ISLP K++ FV++ GWS L+++L  S++
Sbjct: 1   PFIVIDLIVSNLLLALGMQMVSPMTISLPLKLLLFVMVSGWSRLLDSLFLSYL 53


>gi|213615826|ref|ZP_03371652.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 73

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 43/64 (67%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++  GI  +LSI P++++M T F +  +VFSILR  +G+  VPPN+ +   AL ++ ++M
Sbjct: 8   LQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIM 67

Query: 100 SPTL 103
            PTL
Sbjct: 68  GPTL 71


>gi|179741334|gb|ACB86712.1| HrcR [uncultured soil bacterium]
          Length = 72

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 46/58 (79%)

Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
           +L P+F ++EL  +F+IGFL+ + F+++D+++A ++MAMG+  + PT++++P K++ F
Sbjct: 13  VLAPAFTLTELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 70


>gi|194350751|gb|ACF53806.1| HrcR [Brenneria salicis]
          Length = 128

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 64/107 (59%), Gaps = 10/107 (9%)

Query: 119 ITETTAIQRVA----EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYR---I 171
           +T+ T++Q       EP   FM   +R  D  +   +  +S +    + ++ +  +   +
Sbjct: 14  MTDITSLQASVTYGLEPLQTFM---SRNVDPDILTHLHENSLQMWPASLSEKVNTQNLLL 70

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
           +IP+F++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM  + P +
Sbjct: 71  VIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQRVAPXT 117


>gi|51587262|emb|CAE53651.1| putative HrcR protein [Pseudomonas blatchfordae]
          Length = 53

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 42/53 (79%)

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           PF++ID+IV+ +++A+GM M+ P +ISLP K++ FV++ GWS L+ +L  S++
Sbjct: 1   PFIVIDLIVSNLLLALGMQMVSPMTISLPPKLLLFVMVSGWSRLLVSLFLSYL 53


>gi|51587294|emb|CAE53675.1| putative HrcR protein [Pseudomonas fluorescens bv. I]
 gi|321399637|emb|CBJ44643.1| putative type III secretion system protein HcrR [Pseudomonas sp.
           MTR-25-321]
          Length = 50

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 40/50 (80%)

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GW+ L+++L  S++
Sbjct: 1   VIDLIVSNLLLALGMQMVAPMTISLPLKLLIFVLVQGWTQLLDSLFYSYL 50


>gi|51587310|emb|CAE53687.1| putative HrcR [Pseudomonas fluorescens bv. III]
 gi|321399613|emb|CBJ44625.1| putative type III secretion system protein HrcR [Pseudomonas sp.
           MTE-25-201]
 gi|321399633|emb|CBJ44640.1| putative type III secretion system protein HcrR [Pseudomonas sp.
           MTE-J5-708]
          Length = 51

 Score = 53.9 bits (128), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 41/51 (80%)

Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           ++ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GW+ L+++L  S++
Sbjct: 1   IVIDLIVSNLLLALGMQMVAPMTISLPLKLLIFVLVQGWTQLLDSLFYSYL 51


>gi|51587306|emb|CAE53684.1| putative HrcR [Pseudomonas fluorescens bv. II]
          Length = 49

 Score = 53.1 bits (126), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 39/49 (79%)

Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GW+ L+++L  S++
Sbjct: 1   IDLIVSNLLLALGMQMVAPMTISLPLKLLIFVLVQGWTQLLDSLFYSYL 49


>gi|51587282|emb|CAE53666.1| putative HrcR protein [Pseudomonas fluorescens bv. I]
          Length = 49

 Score = 52.4 bits (124), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 39/49 (79%)

Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           ID+IV+ +++A+GM M+ P +ISLP K++ FV++ GWS L+++L  S++
Sbjct: 1   IDLIVSNLLLALGMQMVSPMTISLPLKLLLFVMVSGWSRLLDSLFLSYL 49


>gi|51587298|emb|CAE53678.1| putative HrcR protein [Pseudomonas fluorescens bv. V]
          Length = 48

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 38/48 (79%)

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           D+IV+ +++A+GM M+ P +ISLP K++ FV++ GWS L+++L  S++
Sbjct: 1   DLIVSNLLLALGMQMVSPMTISLPLKLLLFVMVSGWSRLLDSLFLSYL 48


>gi|323178894|gb|EFZ64470.1| harpin secretion protein hrpW [Escherichia coli 1180]
          Length = 118

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 58/103 (56%), Gaps = 8/103 (7%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP-TL 103
           +F +LS+ PI +++ T F +  IV  IL+  +G+  VPPN+ + S++L +T ++MSP  L
Sbjct: 17  VFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSLILTMFIMSPIIL 76

Query: 104 DRSIEMGIQPLMNNQITETTAIQRVAE----PFWVFMRNNTRE 142
             +  +  +P+     T++   Q+V E    P+  F+    R+
Sbjct: 77  QINDNISQEPI---NYTDSDFFQKVDEKILSPYRGFLEKIQRK 116


>gi|289805086|ref|ZP_06535715.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 62

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 38/57 (66%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100
           GI  +LSI P++++M T F +  +VFSILR  +G+  VPPN+ +   AL ++ ++M 
Sbjct: 3   GILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMG 59


>gi|291084579|ref|ZP_06539401.2| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 60

 Score = 50.1 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 37/60 (61%)

Query: 71  ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
           +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +I+   A+ + A+
Sbjct: 1   MLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQKISMQEALDKGAQ 60


>gi|284810343|gb|ADB95953.1| putative HrcR [Pseudomonas cichorii]
 gi|284810347|gb|ADB95956.1| putative HrcR [Pseudomonas cichorii]
 gi|284810351|gb|ADB95959.1| putative HrcR [Pseudomonas cichorii]
 gi|284810355|gb|ADB95962.1| putative HrcR [Pseudomonas cichorii]
 gi|284810359|gb|ADB95965.1| putative HrcR [Pseudomonas cichorii]
 gi|284810363|gb|ADB95968.1| putative HrcR [Pseudomonas cichorii]
 gi|284810367|gb|ADB95971.1| putative HrcR [Pseudomonas cichorii]
 gi|284810371|gb|ADB95974.1| putative HrcR [Pseudomonas cichorii]
 gi|284810375|gb|ADB95977.1| putative HrcR [Pseudomonas cichorii]
 gi|284810379|gb|ADB95980.1| putative HrcR [Pseudomonas cichorii]
 gi|284810403|gb|ADB95998.1| putative HrcR [Pseudomonas cichorii]
          Length = 44

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 34/44 (77%)

Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           + I++A+GM M+ P +ISLP K++ FVL+DGW+ L++ L  S++
Sbjct: 1   SNILLALGMQMVAPMTISLPLKILLFVLVDGWTRLLDGLFYSYM 44


>gi|51587254|emb|CAE53645.1| putative HrcR protein [Pseudomonas salomonii]
          Length = 50

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 39/50 (78%)

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +ID+IV+ +++A+GM M+ P +ISLP K++  V++ GWS L+++L  S++
Sbjct: 1   VIDLIVSNLLLALGMQMVSPMTISLPLKLLLSVMVSGWSRLLDSLFFSYL 50


>gi|255023681|ref|ZP_05295667.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
           J1-208]
          Length = 118

 Score = 49.3 bits (116), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 41/62 (66%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V  F + T+LS++  +++M T F   IIV  + R G+G  ++PPN V++ LALF++ ++M
Sbjct: 52  VALFVLVTVLSLSASIVLMFTHFTYCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMM 111

Query: 100 SP 101
            P
Sbjct: 112 QP 113


>gi|226446413|gb|ACO58572.1| HrcR [Pseudomonas fluorescens]
          Length = 46

 Score = 48.1 bits (113), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 36/46 (78%)

Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           IV+ +++A+GM M+ P +ISLP K++ FV++ GWS L+++L  S++
Sbjct: 1   IVSNLLLALGMQMVSPMTISLPLKLLLFVMVSGWSRLLDSLFLSYL 46


>gi|190694824|gb|ACE88959.1| HrcR [Pseudomonas fluorescens]
          Length = 47

 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 37/47 (78%)

Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +IV+ +++A+GM M+ P +ISLP K++ FV++ GWS L+++L  S++
Sbjct: 1   LIVSNLLLALGMQMVSPMTISLPLKLLLFVMVSGWSRLLDSLFFSYL 47


>gi|331005461|ref|ZP_08328840.1| hypothetical protein IMCC1989_1974 [gamma proteobacterium IMCC1989]
 gi|330420737|gb|EGG95024.1| hypothetical protein IMCC1989_1974 [gamma proteobacterium IMCC1989]
          Length = 39

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 31/37 (83%)

Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MGM+M+PP  ISLP K++ F+LIDGW ++ ++L++SF
Sbjct: 1   MGMLMVPPMMISLPIKILMFILIDGWFIVTKSLMESF 37


>gi|284810387|gb|ADB95986.1| putative HrcR [Pseudomonas cichorii]
 gi|284810391|gb|ADB95989.1| putative HrcR [Pseudomonas cichorii]
 gi|284810399|gb|ADB95995.1| putative HrcR [Pseudomonas cichorii]
          Length = 40

 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 31/40 (77%)

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +A+GM M+ P +ISLP K++ FVL+DGW+ L++ L  S++
Sbjct: 1   LALGMQMVAPMTISLPLKILLFVLVDGWTRLLDGLFYSYM 40


>gi|226326425|ref|ZP_03801943.1| hypothetical protein PROPEN_00273 [Proteus penneri ATCC 35198]
 gi|225205208|gb|EEG87562.1| hypothetical protein PROPEN_00273 [Proteus penneri ATCC 35198]
          Length = 121

 Score = 45.4 bits (106), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 36/59 (61%)

Query: 50  SIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108
           ++AP ++   TC+ +F IV  + R  +G+  VP N+V+ ++AL M  +VM+P    S +
Sbjct: 15  TLAPFIIAAGTCYLKFSIVLVMTRNALGVQQVPSNMVLNAVALMMALFVMTPIAKNSYQ 73


>gi|15646198|ref|NP_207478.1| flagellar biosynthesis protein [Helicobacter pylori 26695]
 gi|7464067|pir||D64605 flagellar biosynthesis protein - Helicobacter pylori (strain
          26695)
          Length = 105

 Score = 45.1 bits (105), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 50/94 (53%), Gaps = 7/94 (7%)

Query: 6  FFALFLVTP---ELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
          F  L L+ P    L+ A S+L  V   +N P D       +    + T+L +AP L++++
Sbjct: 4  FIFLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVM 63

Query: 60 TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
          T F R I+VFS LRT +G    PP+    SLALF
Sbjct: 64 TSFTRLIVVFSFLRTALGTQQTPPH-SNFSLALF 96


>gi|270488968|ref|ZP_06206042.1| flagellar biosynthesis protein FliP domain protein [Yersinia pestis
           KIM D27]
 gi|270337472|gb|EFA48249.1| flagellar biosynthesis protein FliP domain protein [Yersinia pestis
           KIM D27]
          Length = 41

 Score = 45.1 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/41 (56%), Positives = 35/41 (85%)

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           ++AMGMMM+ P ++SLPFK++ FVL+DGWSL++  LV S++
Sbjct: 1   MLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL 41


>gi|51587258|emb|CAE53648.1| putative HrcR protein [Pseudomonas gingeri]
          Length = 53

 Score = 44.3 bits (103), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 43/53 (81%)

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           PF++ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GWS L+++L  S++
Sbjct: 1   PFIVIDLIVSNLLLALGMQMVSPMTISLPLKLLLFVLVQGWSRLLDSLFYSYL 53


>gi|51587266|emb|CAE53654.1| putative HrcR [Pseudomonas fluorescens bv. I]
 gi|51587322|emb|CAE53696.1| putative HrcR [Pseudomonas sp. CFBP 11402]
          Length = 53

 Score = 43.1 bits (100), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 43/53 (81%)

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           PF++ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GWS L+++L  S++
Sbjct: 1   PFIVIDLIVSNLLLALGMQMVSPMTISLPLKLLLFVLVSGWSRLLDSLFLSYL 53


>gi|321399625|emb|CBJ44634.1| putative type III secretion system protein HcrR [Pseudomonas sp.
           MTE-48-204]
 gi|321399629|emb|CBJ44637.1| putative type III secretion system protein HcrR [Pseudomonas sp.
           MTE-48-205]
          Length = 53

 Score = 43.1 bits (100), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 43/53 (81%)

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           PF++ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GW+ L+++L  S++
Sbjct: 1   PFIVIDLIVSNLLLALGMQMVSPMTISLPLKLLLFVLVQGWTRLLDSLFYSYL 53


>gi|213419313|ref|ZP_03352379.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 100

 Score = 43.1 bits (100), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 32/49 (65%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
           P ++   TCF +F IVF ++R  +G+  +P N+ + S+AL ++ +VM P
Sbjct: 18  PFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNSVALLLSMFVMWP 66


>gi|179741285|gb|ACB86710.1| HrcR [uncultured soil bacterium]
          Length = 88

 Score = 42.4 bits (98), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 6/77 (7%)

Query: 130 EPFWVFMRNNTREKDLSLFMDMAHS---SHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           EPF  F+  + + ++   F+  A +   + +   +   D I   +L P+F ++EL  +F+
Sbjct: 15  EPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLI---VLAPAFTLTELTDAFK 71

Query: 187 IGFLIILPFLIIDMIVA 203
           IGFL+ + F+++D+ +A
Sbjct: 72  IGFLLYIGFIVVDLEIA 88


>gi|254510638|ref|ZP_05122705.1| flagellar biosynthetic protein FliP [Rhodobacteraceae bacterium
          KLH11]
 gi|221534349|gb|EEE37337.1| flagellar biosynthetic protein FliP [Rhodobacteraceae bacterium
          KLH11]
          Length = 101

 Score = 42.0 bits (97), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 28/42 (66%)

Query: 34 SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTG 75
          SIS   ++   + T+LS+AP L IM+TCFP  I V +ILR G
Sbjct: 31 SISARTIQLILLITVLSLAPGLAIMITCFPFLITVLAILRQG 72


>gi|207110048|ref|ZP_03244210.1| flagellar biosynthesis protein FliP [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 104

 Score = 41.2 bits (95), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 6/83 (7%)

Query: 6   FFALFLVTP---ELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           F  L L+ P    L+ A S+L  V   +N P D       +    + T+L +AP L++++
Sbjct: 22  FIFLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVM 81

Query: 60  TCFPRFIIVFSILRTGMGMGSVP 82
           T F R I+VFS LRT +G    P
Sbjct: 82  TSFTRLIVVFSFLRTALGTQQTP 104


>gi|9663110|emb|CAC01118.1| FliP flagellar protein, truncated [Helicobacter pylori]
          Length = 51

 Score = 40.8 bits (94), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 27/40 (67%)

Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPP 83
           + T+L +AP L++++T F R I+VFS LRT +G    PP
Sbjct: 9  ALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQTPP 48


>gi|321399653|emb|CBJ44655.1| putative type III secretion system protein HcrR [Pseudomonas sp.
           MTR-J5-327]
          Length = 52

 Score = 40.4 bits (93), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 42/52 (80%)

Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           F++ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GW+ L+++L  S++
Sbjct: 1   FIVIDLIVSNLLLALGMQMVSPMTISLPLKLLLFVLVQGWTRLLDSLFYSYL 52


>gi|321399836|emb|CBJ44673.1| putative type III secretion system protein HcrR [Pseudomonas sp.
           MTR-J5-721]
          Length = 53

 Score = 40.4 bits (93), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 42/53 (79%)

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           PF++I +IV+ +++A+GM M+ P +ISLP K++ FVL+ GW+ L+++L  S++
Sbjct: 1   PFIVIGLIVSNLLLALGMQMVSPMTISLPLKLLLFVLVQGWTRLLDSLFYSYL 53


>gi|330985215|gb|EGH83318.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 133

 Score = 40.0 bits (92), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 16/57 (28%), Positives = 34/57 (59%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
           +   + + P+ ++ +T F +  +V  ++R  +G+   PPNLV+  +AL ++ YV +P
Sbjct: 14  VVATIGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIALILSVYVTTP 70


>gi|51587246|emb|CAE53639.1| putative HrcR protein [Pseudomonas syringae pv. syringae]
 gi|51587250|emb|CAE53642.1| putative HrcR protein [Pseudomonas syringae pv. phaseolicola]
          Length = 53

 Score = 40.0 bits (92), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 43/53 (81%)

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           PF++ID+IV+ +++A+GM M+ P ++SLP K++ FVL+ GWS L+++L  S++
Sbjct: 1   PFIVIDLIVSNLLLALGMQMVSPMTLSLPLKLLLFVLVSGWSRLLDSLFYSYM 53


>gi|130855423|gb|ABO32589.1| SpaP [Sodalis endosymbiont of Craterina melbae]
          Length = 48

 Score = 38.9 bits (89), Expect = 0.64,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 27/35 (77%)

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           MM+ P ++S+P K++ FV++DGW+LL + LV  ++
Sbjct: 1   MMMSPITLSVPIKLVLFVVLDGWTLLSQGLVLQYL 35


>gi|51587270|emb|CAE53657.1| putative HrcR [Pseudomonas fluorescens]
          Length = 49

 Score = 37.7 bits (86), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 39/49 (79%)

Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GWS L+++L  S++
Sbjct: 1   IDLIVSNLLLALGMQMVSPMTISLPLKLLLFVLVSGWSRLLDSLFLSYL 49


>gi|158295424|ref|XP_001688797.1| gustatory receptor (AGAP006143-PD) [Anopheles gambiae str. PEST]
 gi|157016031|gb|EDO63803.1| gustatory receptor (AGAP006143-PD) [Anopheles gambiae str. PEST]
          Length = 370

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 20  KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79
             SL  VM + +DL   ++  +   IF ++ +  +L I VTC     IVF ++  G+G+ 
Sbjct: 206 NHSLQTVMALGSDLE--SFKRKCSSIFGLMQLLHLLNIFVTCSVEAYIVFHVVDMGLGIH 263

Query: 80  SVPPNLV 86
            VP NLV
Sbjct: 264 YVPMNLV 270


>gi|213028920|ref|ZP_03343367.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 125

 Score = 37.4 bits (85), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 28/43 (65%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMT 95
           P ++   TCF +F IVF ++R  +G+  +P N+ + S+AL ++
Sbjct: 82  PFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNSVALLLS 124


>gi|330947078|gb|EGH47860.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 28

 Score = 36.6 bits (83), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 14/25 (56%), Positives = 20/25 (80%)

Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245
           +PFK++ FVL+DGW+L+V  L  SF
Sbjct: 1   MPFKIMLFVLVDGWALIVGTLAGSF 25


>gi|284810383|gb|ADB95983.1| putative HrcR [Pseudomonas cichorii]
 gi|284810395|gb|ADB95992.1| putative HrcR [Pseudomonas cichorii]
 gi|284810407|gb|ADB96001.1| putative HrcR [Pseudomonas cichorii]
 gi|284810411|gb|ADB96004.1| putative HrcR [Pseudomonas cichorii]
 gi|284810415|gb|ADB96007.1| putative HrcR [Pseudomonas cichorii]
          Length = 30

 Score = 36.2 bits (82), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 23/29 (79%)

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +ISLP K++ FVL+DGW+ L++ L  S++
Sbjct: 2   TISLPLKILLFVLVDGWTRLLDGLFYSYM 30


>gi|51587302|emb|CAE53681.1| putative HrcR protein [Pseudomonas fluorescens]
          Length = 48

 Score = 35.8 bits (81), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 38/48 (79%)

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           D+IV+ +++A+GM M+ P +ISLP K++ FVL+ GWS L+++L  S++
Sbjct: 1   DLIVSNLLLALGMQMVSPMTISLPLKLLLFVLVTGWSRLLDSLFLSYL 48


>gi|296806037|ref|XP_002843838.1| oligopeptide transporter [Arthroderma otae CBS 113480]
 gi|238845140|gb|EEQ34802.1| oligopeptide transporter [Arthroderma otae CBS 113480]
          Length = 506

 Score = 35.0 bits (79), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 20/108 (18%)

Query: 25  DVMNIPADLSISTWIVR--TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82
           +++ +PA L +  W+ R  +  IFT + +A   ++  T FP      S ++TG+      
Sbjct: 79  NLLPVPASLLVDGWLGRFLSLQIFTAIYVAGSAILFATSFP------SQMQTGVATIGFI 132

Query: 83  PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
           P  ++I++ L              ++  +QP + +Q TET    RV +
Sbjct: 133 PAAILIAIGL------------GGVQAAVQPFIADQYTETKMRVRVTK 168


Searching..................................................done


Results from round 2




>gi|254780372|ref|YP_003064785.1| flagellar biosynthesis protein FliP [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040049|gb|ACT56845.1| flagellar biosynthesis protein FliP [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 246

 Score =  251 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 246/246 (100%), Positives = 246/246 (100%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT
Sbjct: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
           CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT
Sbjct: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
           ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE
Sbjct: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN
Sbjct: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240

Query: 241 LVKSFI 246
           LVKSFI
Sbjct: 241 LVKSFI 246


>gi|315121841|ref|YP_004062330.1| flagellar biosynthesis protein FliP [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495243|gb|ADR51842.1| flagellar biosynthesis protein FliP [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 246

 Score =  238 bits (607), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 211/246 (85%), Positives = 232/246 (94%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           MIRY FF  F V PE VFA+SSLHD+M IP +LS+STWIVRTFG+FTILSI PILLIMVT
Sbjct: 1   MIRYLFFGFFFVVPESVFAQSSLHDIMEIPPNLSVSTWIVRTFGLFTILSIVPILLIMVT 60

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
           CFPRFIIVFSILRTGMGMGS+PPNLVIISLALFMTFYVMSPTLDRSIEMG+QPL++N+IT
Sbjct: 61  CFPRFIIVFSILRTGMGMGSIPPNLVIISLALFMTFYVMSPTLDRSIEMGVQPLISNKIT 120

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
           ET AI+R+AEPFW+FM+NNTREKDL LFM+MA S+H+NTDI K+DHIEYRILIPSFMISE
Sbjct: 121 ETVAIKRIAEPFWIFMKNNTREKDLFLFMEMAKSTHKNTDIKKDDHIEYRILIPSFMISE 180

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK+IFFVLIDGW LLVEN
Sbjct: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKIIFFVLIDGWGLLVEN 240

Query: 241 LVKSFI 246
           LV+SF+
Sbjct: 241 LVRSFV 246


>gi|312621584|ref|YP_004023197.1| flagellar biosynthetic protein flip [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202051|gb|ADQ45378.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 252

 Score =  235 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 103/231 (44%), Positives = 160/231 (69%), Gaps = 4/231 (1%)

Query: 15  ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74
           E+ FA +SL+  +  P + +  +  ++     TIL++AP +LIM+T F R +IV   +R 
Sbjct: 25  EIAFATASLNINLGNPQNPNDVSSALQLIIFLTILTLAPSILIMMTSFTRILIVLGFIRN 84

Query: 75  GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134
            +G   +PPN ++I LALF+TF+VM+P  D+      QP +N +IT   A++R  EP   
Sbjct: 85  ALGTQQMPPNQILIGLALFLTFFVMAPVTDKIYTQAYQPYINGRITSQEALKRAEEPLKE 144

Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
           FM  NTR+KDL LF+ +++ +      T    +  R+++P+F+ISEL+ +FE+GFLI +P
Sbjct: 145 FMLKNTRKKDLDLFVKLSNVN----PNTNVKDLPLRVVVPAFIISELKSAFEMGFLIYVP 200

Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           FLIIDM+VA+I+M+MGM+M+PP  ISLPFK++ F+L+DGW+L+VE+LV+SF
Sbjct: 201 FLIIDMVVASILMSMGMLMIPPVMISLPFKILLFILVDGWNLVVESLVRSF 251


>gi|312126835|ref|YP_003991709.1| flagellar biosynthetic protein flip [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776854|gb|ADQ06340.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 253

 Score =  235 bits (599), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 104/235 (44%), Positives = 160/235 (68%), Gaps = 4/235 (1%)

Query: 11  LVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
            V  E+ FA +SL+  +  P +    +  ++     TIL++AP +LIM+T F R +IV  
Sbjct: 22  CVKKEIAFATASLNINLGSPQNPKDVSSALQLIIFLTILTLAPSILIMMTSFTRILIVLG 81

Query: 71  ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
            +R  +G   +PPN ++I LALF+TF+VM+P  D+      QP +N +IT   A++R  E
Sbjct: 82  FVRNALGTQQMPPNQILIGLALFLTFFVMAPVTDKIYTQAYQPYINGRITSQEALKRAEE 141

Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
           P   FM  NTR+KDL LF+ +++ +      T    +  R+++P+F+ISEL+ +FE+GFL
Sbjct: 142 PLKEFMLKNTRKKDLDLFVKLSNVN----PNTNVKDLPLRVVVPAFIISELKSAFEMGFL 197

Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           I +PFLIIDM+VA+I+M+MGM+M+PP  ISLPFK++ F+L+DGW+L+VE+LV+SF
Sbjct: 198 IYVPFLIIDMVVASILMSMGMLMIPPVMISLPFKILLFILVDGWNLVVESLVRSF 252


>gi|238924154|ref|YP_002937670.1| flagellar biosynthetic protein FliP [Eubacterium rectale ATCC
           33656]
 gi|238875829|gb|ACR75536.1| flagellar biosynthetic protein FliP [Eubacterium rectale ATCC
           33656]
 gi|291524887|emb|CBK90474.1| flagellar biosynthetic protein FliP [Eubacterium rectale DSM 17629]
 gi|291529028|emb|CBK94614.1| flagellar biosynthetic protein FliP [Eubacterium rectale M104/1]
          Length = 299

 Score =  234 bits (598), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 96/215 (44%), Positives = 146/215 (67%), Gaps = 5/215 (2%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
            +    +  VR F + T+LS+AP +LIM+T F R IIV   +RT +G  + PPN V++ L
Sbjct: 89  NESGSLSTPVRMFLVLTVLSLAPSILIMLTSFTRIIIVLHFVRTAIGTQTAPPNQVLVGL 148

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           ALF+T ++M PT  +  E  I+PL   +IT+  AI+    PF  FM   T+ KD+ LF+D
Sbjct: 149 ALFLTLFIMWPTFSQVNEKAIKPLDEGKITQQEAIKEAEGPFREFMYGQTQTKDIKLFVD 208

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           ++       +    D + +  L+P+F++SELR +F +GFLI +PF++IDM+V++++M+MG
Sbjct: 209 ISG-----DEYDDYDDVPFTTLVPAFILSELRTAFILGFLIYIPFIVIDMVVSSVLMSMG 263

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMMLPPT+IS+PFKV+ F+L DGW L++ NLVK+F
Sbjct: 264 MMMLPPTTISMPFKVLLFILADGWDLVIGNLVKTF 298


>gi|222530123|ref|YP_002574005.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222456970|gb|ACM61232.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 252

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 101/235 (42%), Positives = 159/235 (67%), Gaps = 4/235 (1%)

Query: 11  LVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
               E+ FA +SL+  +    + +  +  ++     TIL++AP +LIM+T F R +IV  
Sbjct: 21  CAKKEIAFAAASLNINLGNSQNPNDVSSALQLIIFLTILTLAPSILIMMTSFTRILIVLG 80

Query: 71  ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
            +R  +G   +PPN ++I LALF+TF+VM+P  D+      QP +N +IT   A++R  E
Sbjct: 81  FIRNALGTQQMPPNQILIGLALFLTFFVMAPVTDKIYIQAYQPYINGRITSQEALKRAEE 140

Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
           P   FM  NTR+KDL LF+ +++ +      T    +  R+++P+F+ISEL+ +FE+GFL
Sbjct: 141 PLKEFMLKNTRKKDLDLFVKLSNVN----PNTNVKDLPLRVVVPAFIISELKSAFEMGFL 196

Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           I +PFLIIDM+VA+I+M+MGM+M+PP  ISLPFK++ F+L+DGW+L++E+LV+SF
Sbjct: 197 IYVPFLIIDMVVASILMSMGMLMIPPVMISLPFKILLFILVDGWNLVIESLVRSF 251


>gi|312876513|ref|ZP_07736496.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796724|gb|EFR13070.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 252

 Score =  232 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 102/242 (42%), Positives = 160/242 (66%), Gaps = 4/242 (1%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
           +          E+ FA +S++  +  P +    +  ++     TIL++AP +LIM+T F 
Sbjct: 14  FLILITTCAKKEIAFASASININLGSPQNPKDVSSALQLIIFLTILTLAPSILIMMTSFT 73

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
           R +IV   +R  +G   +PPN ++I LALF+TF+VM+P  D+      QP +N +IT   
Sbjct: 74  RILIVLGFVRNALGTQQMPPNQILIGLALFLTFFVMAPVTDKIYTQAYQPYINGRITSQE 133

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
           A++R  EP   FM  NTR+KDL LF+ +++ +      T    +  R+++P+F+ISEL+ 
Sbjct: 134 ALKRAEEPLKEFMLKNTRKKDLDLFVKLSNVN----PNTNVKDLPLRVVVPAFIISELKS 189

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
           +FE+GFLI +PFLIIDM+VA+I+M+MGM+M+PP  ISLPFK++ F+L+DGW+L+VE+LV+
Sbjct: 190 AFEMGFLIYVPFLIIDMVVASILMSMGMLMIPPVMISLPFKILLFILVDGWNLVVESLVR 249

Query: 244 SF 245
           SF
Sbjct: 250 SF 251


>gi|302872555|ref|YP_003841191.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302575414|gb|ADL43205.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 253

 Score =  231 bits (589), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 100/231 (43%), Positives = 156/231 (67%), Gaps = 4/231 (1%)

Query: 15  ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74
           ++ FA +S    ++ P +    +  ++     TIL++AP +LIM+T F R +IV   +R 
Sbjct: 26  QIAFASASFSINLDNPQNPKDVSSALQLIIFLTILTLAPSILIMMTSFTRILIVLGFVRN 85

Query: 75  GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134
            +G   +PPN ++I LALF+TF+VM+P  D+      QP +  QIT   A++R  +P   
Sbjct: 86  ALGTQQMPPNQILIGLALFLTFFVMAPVTDKIYTQAYQPYIKGQITSQEALKRAEQPLKE 145

Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
           FM  NTR+KDL LF+ + + +      T    +  R+++P+F+ISEL+ +FE+GFLI +P
Sbjct: 146 FMLKNTRKKDLDLFVKLGNIN----PNTNVKDLPIRVVVPAFIISELKSAFEMGFLIYVP 201

Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           FLIIDM+VA+I+M+MGM+M+PP  ISLPFK++ F+L+DGW+L+VE+LV+SF
Sbjct: 202 FLIIDMVVASILMSMGMLMIPPVMISLPFKILLFILVDGWNLVVESLVRSF 252


>gi|312792663|ref|YP_004025586.1| flagellar biosynthetic protein flip [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179803|gb|ADQ39973.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 253

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 103/236 (43%), Positives = 159/236 (67%), Gaps = 4/236 (1%)

Query: 10  FLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVF 69
                E+ FA +SL+  +  P +    +  ++     TIL++AP +LIM+T F R +IV 
Sbjct: 21  VCAKKEIAFASASLNINLGSPQNPKDVSSALQLLIFLTILTLAPSILIMMTSFTRILIVL 80

Query: 70  SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129
             +R  +G   +PPN ++I LALF+TF+VM+P  D+      QP +N +IT   A++R  
Sbjct: 81  GFVRNALGTQQMPPNQILIGLALFLTFFVMAPVTDKIYTQAYQPYINGRITSQEALKRAE 140

Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189
           EP   FM  NTR+KDL LF+ +++ +      T    +  R+++P+F+ISEL+ +FE+GF
Sbjct: 141 EPLKEFMLKNTRKKDLDLFVKLSNVN----PNTNVKDLPLRVVVPAFIISELKSAFEMGF 196

Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LI +PFLIIDM+VA+I+M+MGM+M+PP  ISLPFK++ F+L+DGW+L+VE+LV+SF
Sbjct: 197 LIYVPFLIIDMVVASILMSMGMLMIPPVMISLPFKILLFILVDGWNLVVESLVRSF 252


>gi|302384102|ref|YP_003819925.1| flagellar biosynthetic protein FliP [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194730|gb|ADL02302.1| flagellar biosynthetic protein FliP [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 325

 Score =  229 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 97/219 (44%), Positives = 149/219 (68%), Gaps = 4/219 (1%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
           +++     ++  +V+  G+ T+LS+AP ++IM T F R I+V S+LRT +GM   PPN V
Sbjct: 104 LDLGTGAGLTERVVQLVGLMTVLSLAPSIVIMTTSFVRIIVVLSLLRTALGMQQSPPNAV 163

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           ++SLALF++  VM+PT   + + GI+PLM+ Q+    A    +EP   FM     + DL+
Sbjct: 164 LVSLALFLSAIVMAPTWQDAYDSGIRPLMDQQMELPQAFDLASEPVKTFMLAQVDQGDLA 223

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
           LF  ++        +     +  R++ P+FMISEL+++FEIGFL+ +PFL+ID++VA+++
Sbjct: 224 LFTRLSRIEAPTQTV----DLPLRVVTPAFMISELKKAFEIGFLLFVPFLVIDLVVASVL 279

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+MGMMMLPP  ISLPFK+IFFVL+DGW L+  +LV+SF
Sbjct: 280 MSMGMMMLPPVVISLPFKLIFFVLVDGWRLVAGSLVESF 318


>gi|186477688|ref|YP_001859158.1| flagellar biosynthesis protein FliP [Burkholderia phymatum STM815]
 gi|184194147|gb|ACC72112.1| flagellar biosynthetic protein FliP [Burkholderia phymatum STM815]
          Length = 281

 Score =  227 bits (579), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 100/242 (41%), Positives = 153/242 (63%), Gaps = 7/242 (2%)

Query: 8   ALFLVTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
           AL L  P L  A+++     N    P   +  +  V+T  + T+LS  P +++M+T F R
Sbjct: 44  ALMLAAPTLSHAQTAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTR 103

Query: 65  FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
            IIV S+LR  +G  + PPN V++ LALF+T +VMSP LD++   G +P     I    A
Sbjct: 104 IIIVLSLLRQAIGAPTTPPNQVLVGLALFLTLFVMSPVLDKAYNDGYKPFSEGTIQMDEA 163

Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
           ++R   PF  FM   TRE DL+LF  ++H+      +   + +   +L+PSF+ SEL+  
Sbjct: 164 VKRGVAPFKAFMLKQTRESDLALFARISHAP----PMQGPEDVPLSLLVPSFVTSELKTG 219

Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           F+IGF + +PF+IIDM+VA+++M+MGMMM+ P +ISLPFK++ FVL+DGW L+V +L +S
Sbjct: 220 FQIGFTVFIPFVIIDMVVASVLMSMGMMMISPATISLPFKLMLFVLVDGWQLIVGSLAQS 279

Query: 245 FI 246
           F+
Sbjct: 280 FV 281


>gi|312135838|ref|YP_004003176.1| flagellar biosynthetic protein flip [Caldicellulosiruptor
           owensensis OL]
 gi|311775889|gb|ADQ05376.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor
           owensensis OL]
          Length = 253

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 100/242 (41%), Positives = 155/242 (64%), Gaps = 4/242 (1%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
                      EL FA ++++  +  P +    +  ++     TIL++ P +LIM+T F 
Sbjct: 15  LSILITVCFKKELAFATANININLGNPQNPDDISSALQLIIFLTILTLVPSILIMMTSFT 74

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
           R +IV   +R  +G   +PPN ++I LALF+TF+VM+P  D+      QP +N +IT   
Sbjct: 75  RILIVLGFVRNALGTQQMPPNQILIGLALFLTFFVMAPVTDKIYTQAYQPYINGEITSQE 134

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
           A++R   P   FM  NTR+KDL LF+ + + +      T    +  R+++P+F+ISEL+ 
Sbjct: 135 ALKRAEVPLKEFMLKNTRKKDLDLFVKLGNVN----PNTNIRDLPLRVVVPAFIISELKS 190

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
           +FE+GFLI +PFLIIDM VA+I+M+MGM+M+PP  ISLPFK++ F+L+DGW+L+VE+LV+
Sbjct: 191 AFEMGFLIYVPFLIIDMTVASILMSMGMLMIPPVMISLPFKILLFILVDGWNLVVESLVR 250

Query: 244 SF 245
           SF
Sbjct: 251 SF 252


>gi|86356318|ref|YP_468210.1| flagellar biosynthesis protein FliP [Rhizobium etli CFN 42]
 gi|86280420|gb|ABC89483.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CFN
           42]
          Length = 245

 Score =  227 bits (578), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 154/246 (62%), Positives = 200/246 (81%), Gaps = 3/246 (1%)

Query: 1   MIRY-CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           MIR+  F A  +  PEL  A+    D++N+P D S++ WI+RTFG+ T+LS+AP +LIMV
Sbjct: 1   MIRFIVFLAAMMAVPELAVAQQLPTDLLNVPVDGSVAAWIIRTFGLLTVLSVAPGILIMV 60

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T FPRF+I FSILR+GMG+ S P N++++SL+LFMTFYVMSPT D++ + G+QPL+ NQI
Sbjct: 61  TSFPRFVIAFSILRSGMGLSSTPSNMILLSLSLFMTFYVMSPTFDQAWQNGVQPLLANQI 120

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
            ET A+QR+AEPF  FM  NTR+KDL+LF+D+A    R  +I   D I+YR+LIP+FMIS
Sbjct: 121 NETEAVQRIAEPFRTFMAANTRDKDLALFVDLAR--ERGQNIQTTDPIDYRVLIPAFMIS 178

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           E+RR FEIGFL++LPFL+ID+IVATI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV 
Sbjct: 179 EIRRGFEIGFLVVLPFLVIDLIVATITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVG 238

Query: 240 NLVKSF 245
           +LV+SF
Sbjct: 239 SLVRSF 244


>gi|190890369|ref|YP_001976911.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CIAT
           652]
 gi|190695648|gb|ACE89733.1| flagellar biosynthesis transmembrane protein [Rhizobium etli CIAT
           652]
 gi|327193042|gb|EGE59954.1| flagellar biosynthesis transmembrane protein [Rhizobium etli
           CNPAF512]
          Length = 245

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 154/246 (62%), Positives = 200/246 (81%), Gaps = 3/246 (1%)

Query: 1   MIRYC-FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           MIR+  F A  +  PEL  A+    D++N+P D S++ WI+RTFG+ T+LS+AP +LIMV
Sbjct: 1   MIRFIIFLAAMMAVPELAVAQQLPTDLLNVPVDGSVAAWIIRTFGLLTVLSVAPGILIMV 60

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T FPRF+I FSILR+GMG+ S P N++++SL+LFMTFYVMSPT D++ + G+QPL+ NQI
Sbjct: 61  TSFPRFVIAFSILRSGMGISSTPSNMILLSLSLFMTFYVMSPTFDQAWQNGVQPLLANQI 120

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
            ET A+QR+AEPF  FM  NTR+KDL+LF+D+A    R  +I   D I+YR+LIP+FMIS
Sbjct: 121 NETEAVQRIAEPFRTFMAANTRDKDLALFVDLAR--ERGQNIQTTDPIDYRVLIPAFMIS 178

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           E+RR FEIGFL++LPFL+ID+IVATI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV 
Sbjct: 179 EIRRGFEIGFLVVLPFLVIDLIVATITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVG 238

Query: 240 NLVKSF 245
           +LV+SF
Sbjct: 239 SLVRSF 244


>gi|94314220|ref|YP_587429.1| flagellar biosynthesis protein FliP [Cupriavidus metallidurans
           CH34]
 gi|93358072|gb|ABF12160.1| flagellar biosynthesis protein FliP [Cupriavidus metallidurans
           CH34]
          Length = 264

 Score =  226 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 106/235 (45%), Positives = 154/235 (65%), Gaps = 7/235 (2%)

Query: 14  PELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
           PE   A+S L  V + P      TW   ++T  + T LS  P  ++M+T F R IIV  +
Sbjct: 34  PESALAQS-LPGVTSRPGPGGGQTWSLSIQTLVLLTSLSFLPAAMLMMTGFTRIIIVLGL 92

Query: 72  LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
           LR  +G  S PPN V++ L+LF+TF+VMSP  D+      QPL  N+I+  TA QR A P
Sbjct: 93  LRNALGTASSPPNQVLVGLSLFLTFFVMSPVFDKVYTDAYQPLSENKISLETAAQRAAVP 152

Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
              FM   TREKDL++F  MA +     ++   + + + +L+P+F+ SEL+ +F+IGF I
Sbjct: 153 LRAFMLRQTREKDLAMFAQMAKTP----ELQGPEDVPFTVLVPAFVTSELKTAFQIGFTI 208

Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
            +PFLIID++VA+++MAMGMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF+
Sbjct: 209 FIPFLIIDLVVASVLMAMGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSFM 263


>gi|300722650|ref|YP_003711940.1| flagellar biosynthesis protein [Xenorhabdus nematophila ATCC 19061]
 gi|297629157|emb|CBJ89753.1| flagellar biosynthesis [Xenorhabdus nematophila ATCC 19061]
          Length = 272

 Score =  226 bits (576), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 99/248 (39%), Positives = 150/248 (60%), Gaps = 7/248 (2%)

Query: 1   MIRYCFFALFLVTPELVF-AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLI 57
           + R     + L  P     A + L  +++ P      +W   V+T    T L   P  L+
Sbjct: 27  LARVITLLMVLFLPLFSMNAAAELPGIISQPLPNGGQSWSLPVQTLIFITALGFIPAALL 86

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           M+T F R IIV  +LR  +G  S PPN V++ LALFMTF++M+P  D+  +    P   +
Sbjct: 87  MMTSFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFMTFFIMAPVFDKVYQDAYLPYNED 146

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
           +IT   A+ + ++P   FM   TRE DL+LF  +A      T     D +  R+L+P+F+
Sbjct: 147 KITLEAALDKGSKPLRQFMLRQTRENDLALFARLADQEAFET----ADSVPLRVLVPAFI 202

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
            SEL+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL
Sbjct: 203 TSELKTAFQIGFTLFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLL 262

Query: 238 VENLVKSF 245
           + +L +SF
Sbjct: 263 LGSLAQSF 270


>gi|269976283|ref|ZP_06183279.1| flagellar biosynthesis protein FliP [Mobiluncus mulieris 28-1]
 gi|269935612|gb|EEZ92150.1| flagellar biosynthesis protein FliP [Mobiluncus mulieris 28-1]
          Length = 528

 Score =  226 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 81/209 (38%), Positives = 133/209 (63%), Gaps = 4/209 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           T  V  F + T+LS+AP LL+M+T F +  IV ++ R  +G+  +PP  V+  LA+F++ 
Sbjct: 323 TTTVLVFLLITVLSVAPSLLLMMTSFTKIFIVLAMARNALGLNQIPPTQVLSGLAIFLSL 382

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           ++M+PT++      +QPL + +I      +   +PF  FM   TRE+D++L    A+  +
Sbjct: 383 FIMAPTVNTLWTDVVQPLTDGKIEVQEVFKLGEKPFRDFMGPLTREEDIALMTRAANRPN 442

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
                   D   +  L+P+FMISE+R +F IGF++ +PFL+ID++V   +M+MGMMMLPP
Sbjct: 443 PE----SLDKTPFTTLVPAFMISEVRSAFIIGFVVFIPFLVIDLVVGAALMSMGMMMLPP 498

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             +SLPFKV+ FV++DGW +L + L+ ++
Sbjct: 499 VMVSLPFKVLLFVMVDGWGMLTQTLIGTY 527


>gi|227876756|ref|ZP_03994865.1| possible flagellar biosynthesis protein FliP [Mobiluncus mulieris
           ATCC 35243]
 gi|227842653|gb|EEJ52853.1| possible flagellar biosynthesis protein FliP [Mobiluncus mulieris
           ATCC 35243]
          Length = 502

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 81/209 (38%), Positives = 133/209 (63%), Gaps = 4/209 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           T  V  F + T+LS+AP LL+M+T F +  IV ++ R  +G+  +PP  V+  LA+F++ 
Sbjct: 297 TTTVLVFLLITVLSVAPSLLLMMTSFTKIFIVLAMARNALGLNQIPPTQVLSGLAIFLSL 356

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           ++M+PT++      +QPL + +I      +   +PF  FM   TRE+D++L    A+  +
Sbjct: 357 FIMAPTVNTLWTDVVQPLTDGKIEVQEVFKLGEKPFRDFMGPLTREEDIALMTRAANRPN 416

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
                   D   +  L+P+FMISE+R +F IGF++ +PFL+ID++V   +M+MGMMMLPP
Sbjct: 417 PE----SLDKTPFTTLVPAFMISEVRSAFIIGFVVFIPFLVIDLVVGAALMSMGMMMLPP 472

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             +SLPFKV+ FV++DGW +L + L+ ++
Sbjct: 473 VMVSLPFKVLLFVMVDGWGMLTQTLIGTY 501


>gi|116250488|ref|YP_766326.1| flagellar biosynthesis protein FliP [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|241203112|ref|YP_002974208.1| flagellar biosynthesis protein FliP [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|115255136|emb|CAK06210.1| putative flagellar biosynthetic protein FliP [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|240857002|gb|ACS54669.1| flagellar biosynthetic protein FliP [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 245

 Score =  225 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 156/246 (63%), Positives = 199/246 (80%), Gaps = 3/246 (1%)

Query: 1   MIRY-CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           MIR   F A  +  PEL  A+    D++N+P D S++ WI+RTFG+ TILS+AP +LIMV
Sbjct: 1   MIRLIVFLAAMMAVPELAVAQQLPTDLLNVPVDGSVAAWIIRTFGLLTILSVAPGILIMV 60

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T FPRFII FSILR+GMG+ S P N++++SL+LFMTFYVMSPT D++ + G+QPL+ NQI
Sbjct: 61  TSFPRFIIAFSILRSGMGLSSTPSNMILLSLSLFMTFYVMSPTFDQAWQNGVQPLLANQI 120

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
            ET A+QR+AEPF  FM  NTR+KDL+LF+D+A    R  +I   D I+YR+LIP+FMIS
Sbjct: 121 NETEAVQRIAEPFRTFMAANTRDKDLALFVDLAR--ERGQNIQTTDPIDYRVLIPAFMIS 178

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           E+RR FEIGFL++LPFL+ID+IVATI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV 
Sbjct: 179 EIRRGFEIGFLVVLPFLVIDLIVATITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVG 238

Query: 240 NLVKSF 245
           +LV+SF
Sbjct: 239 SLVRSF 244


>gi|329298603|ref|ZP_08255939.1| flagellar biosynthesis protein FliP [Plautia stali symbiont]
          Length = 341

 Score =  225 bits (573), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 97/227 (42%), Positives = 148/227 (65%), Gaps = 6/227 (2%)

Query: 21  SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           + L  +++ P      +W   V+T    T L+  P +L+M+T F R IIVF +LR  +G 
Sbjct: 117 AQLPGLISQPLANGGQSWSLPVQTLVFITSLTFIPAVLLMITSFTRIIIVFGLLRNALGT 176

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
            S PPN V++ LALF+ F++M+PT D+       P   ++I+   AI + A+P   FM  
Sbjct: 177 PSAPPNQVMLGLALFLNFFIMAPTFDKIYTDAYLPFSQDKISMDVAIDKGAQPLREFMLR 236

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
            TRE DL+LF  +A+S      I   + +  RIL+P+++ SEL+ +F+IGF + +PFLII
Sbjct: 237 QTRETDLALFARLANS----APIQGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLII 292

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           D++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LLV +L +SF
Sbjct: 293 DLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLVGSLAQSF 339


>gi|222147577|ref|YP_002548534.1| flagellar biosynthesis protein FliP [Agrobacterium vitis S4]
 gi|221734565|gb|ACM35528.1| flagellar biosynthetic protein [Agrobacterium vitis S4]
          Length = 245

 Score =  225 bits (573), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 148/246 (60%), Positives = 193/246 (78%), Gaps = 3/246 (1%)

Query: 1   MIR-YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           MIR     A  +  PEL  A+    + +  P D S++ WI+RTFG+ T+LS+AP +LIMV
Sbjct: 1   MIRTLILIAAMIAAPELAQAQQLPSNFLTAPVDGSVAAWIIRTFGLLTVLSVAPGILIMV 60

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T FPRF+I FSILR+GMG+ S P N+++ SLALFMTFYVM+P +D++   G++PL++NQI
Sbjct: 61  TSFPRFVIAFSILRSGMGLSSTPSNMILTSLALFMTFYVMTPVMDQAWRDGVRPLLDNQI 120

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           TE  A+ R+AEPF  FM NNTREKDL LF+D+A+   + T +     ++YR+LIP+FM+S
Sbjct: 121 TEAEAVPRIAEPFRGFMSNNTREKDLRLFIDLANERGQTTVVEG--KVDYRVLIPAFMLS 178

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           E+RR FEIGFLIILPFL+IDMIV+TI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV 
Sbjct: 179 EIRRGFEIGFLIILPFLVIDMIVSTITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVG 238

Query: 240 NLVKSF 245
           +LV+SF
Sbjct: 239 SLVRSF 244


>gi|209547934|ref|YP_002279851.1| flagellar biosynthesis protein FliP [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533690|gb|ACI53625.1| flagellar biosynthetic protein FliP [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 245

 Score =  224 bits (572), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 156/246 (63%), Positives = 198/246 (80%), Gaps = 3/246 (1%)

Query: 1   MIRY-CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           MIR   F A  +  PEL  A+    D++N+P D S++ WI+RTFG+ TILS+AP +LIMV
Sbjct: 1   MIRLIVFLAAMMAVPELAVAQQLPTDLLNVPVDGSVAAWIIRTFGLLTILSVAPGILIMV 60

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T FPRFII FSILR+GMG+ S P N++++SL+LFMTFYVMSPT D++ + G+QPL+ NQI
Sbjct: 61  TSFPRFIIAFSILRSGMGLSSTPSNMILLSLSLFMTFYVMSPTFDQAWQNGVQPLLANQI 120

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
            ET A+QR+AEPF  FM  NTR+KDL+LF+D+A    R   I   D I+YR+LIP+FMIS
Sbjct: 121 NETEAVQRIAEPFRTFMAANTRDKDLALFVDLAR--ERGQTIQTTDPIDYRVLIPAFMIS 178

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           E+RR FEIGFL++LPFL+ID+IVATI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV 
Sbjct: 179 EIRRGFEIGFLVVLPFLVIDLIVATITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVG 238

Query: 240 NLVKSF 245
           +LV+SF
Sbjct: 239 SLVRSF 244


>gi|73539701|ref|YP_300068.1| flagellar biosynthesis protein FliP [Ralstonia eutropha JMP134]
 gi|72123038|gb|AAZ65224.1| Flagellar transport protein FliP [Ralstonia eutropha JMP134]
          Length = 265

 Score =  224 bits (570), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 101/228 (44%), Positives = 150/228 (65%), Gaps = 6/228 (2%)

Query: 21  SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
            +L  V + P       W   ++T  + T LS  P  ++M+T F R +IV  +LR  +G 
Sbjct: 41  QALPGVTSKPGPGGGQIWSLSIQTLVLLTSLSFLPAAVLMMTGFTRIVIVLGLLRNALGT 100

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
            S PPN V++ L+LF+TF+VMSP LDR      +PL  N+I+  TA+ + AEP   FM  
Sbjct: 101 ASSPPNQVLVGLSLFLTFFVMSPVLDRVYNDAYKPLSENRISLETAMAKAAEPLKGFMLK 160

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
            TREKDL++F  MA +     ++   + +   IL+P+F+ SEL+ +F+IGF I +PFLII
Sbjct: 161 QTREKDLAMFAQMAKAP----EMQGPEEVPMSILVPAFVTSELKTAFQIGFTIFIPFLII 216

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           D++VA+++MAMGMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF+
Sbjct: 217 DLVVASVLMAMGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSFM 264


>gi|218460348|ref|ZP_03500439.1| flagellar biosynthesis protein FliP [Rhizobium etli Kim 5]
          Length = 245

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 154/246 (62%), Positives = 199/246 (80%), Gaps = 3/246 (1%)

Query: 1   MIRYC-FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           MIR+  F    +  PEL  A+    D++N+P D S++ WI+RTFG+ TILS+AP +LIMV
Sbjct: 1   MIRFIIFLTAMMAVPELAVAQQLPTDLLNVPVDGSVAAWIIRTFGLLTILSVAPGILIMV 60

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T FPRF+I FSILR+GMG+ S P N++++SL+LFMTFYVMSPT D++ + G+QPL+ NQI
Sbjct: 61  TSFPRFVIAFSILRSGMGLSSTPSNMILLSLSLFMTFYVMSPTFDQAWQSGVQPLLANQI 120

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
            ET A+QR+AEPF  FM  NTR+KDL+LF+D+A    R   I  +D I+YR+LIP+FMIS
Sbjct: 121 NETEAVQRIAEPFRTFMAANTRDKDLALFVDLAR--ERGQTIQTSDPIDYRVLIPAFMIS 178

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           E+RR FEIGFL++LPFL+ID+IVATI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV 
Sbjct: 179 EIRRGFEIGFLVVLPFLVIDLIVATITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVG 238

Query: 240 NLVKSF 245
           +LV+SF
Sbjct: 239 SLVRSF 244


>gi|21672367|ref|NP_660434.1| type III secretion system protein [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25008468|sp|Q8KA37|FLIP_BUCAP RecName: Full=Flagellar biosynthetic protein fliP
 gi|21622972|gb|AAM67645.1| flagellar biosynthetic protein FliP [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 379

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 103/243 (42%), Positives = 144/243 (59%), Gaps = 4/243 (1%)

Query: 3   RYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCF 62
           R        +   LV+A         +       +  V+T    T L+  P  L+M+T F
Sbjct: 139 RIIPLFFLFLFCPLVYADIPGPTSHILRDGSQTWSLPVQTLIFLTSLTFLPAFLLMMTSF 198

Query: 63  PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122
            R IIVF +LR  +G    PPN +++ LALF+TF++MSPT D+  +    P    +I   
Sbjct: 199 TRIIIVFGLLRNALGTPYAPPNQILLGLALFLTFFIMSPTFDQVYKEAYLPFSQEKINMD 258

Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182
            AI + A P   FM N TR  DL LF  +AH S         D I  RIL+PSF+ SEL+
Sbjct: 259 EAIIKGAVPLKKFMLNQTRNSDLELFSKLAHISSYK----NKDEIPMRILLPSFITSELK 314

Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
            +F+IGF I +PFLIID++VA+++MA+GMMM+PP++ISLPFK++ FVL+DGW LLV +L 
Sbjct: 315 TAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPSTISLPFKLMLFVLVDGWQLLVTSLS 374

Query: 243 KSF 245
           +SF
Sbjct: 375 QSF 377


>gi|27904581|ref|NP_777707.1| putative bifunctional flagellar biosynthesis protein FliO/FliP
           [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
 gi|46395829|sp|Q89AZ2|FLIP_BUCBP RecName: Full=Flagellar biosynthetic protein fliP
 gi|27903978|gb|AAO26812.1| flagellar biosynthetic protein FliP [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 360

 Score =  223 bits (569), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 93/241 (38%), Positives = 148/241 (61%), Gaps = 4/241 (1%)

Query: 5   CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
                 L  P   +A               I +  ++T    T L+  P +L+M+T F R
Sbjct: 122 SLCVFLLFCPSYAYAGIPDVISHTSSDGGQIWSIPIQTLVFITSLTFIPTVLLMMTSFSR 181

Query: 65  FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
            +IVFS+LR+ +G    PPN +++ L+L +TF++M+P  D+  +    P   ++I+  TA
Sbjct: 182 IVIVFSLLRSALGTPYSPPNQILVGLSLILTFFIMAPIFDKIYQDSYLPFSEDKISIDTA 241

Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
           I R A+P   FM N TR+ DL  F  +A+ S      ++ + I  R+L+PSF+ SEL+ +
Sbjct: 242 IVRGAKPLHKFMVNQTRQVDLEFFSKLANIS----TFSRKEEIPMRVLLPSFITSELKTA 297

Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           F+IGF I +PFLIID++V++++M++GMMM+PP++ISLPFK++ FVL+DGW LL+ +L  S
Sbjct: 298 FQIGFTIFIPFLIIDLVVSSVLMSLGMMMVPPSTISLPFKLMLFVLVDGWQLLITSLTHS 357

Query: 245 F 245
           F
Sbjct: 358 F 358


>gi|15616704|ref|NP_239916.1| type III secretion system protein [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|12644517|sp|P57184|FLIP_BUCAI RecName: Full=Flagellar biosynthetic protein fliP
 gi|25403546|pir||B84939 flagellar biosynthetic protein fliP [imported] - Buchnera sp.
           (strain APS)
 gi|10038767|dbj|BAB12802.1| flagellar biosynthetic protein fliP [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 379

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 99/242 (40%), Positives = 146/242 (60%), Gaps = 9/242 (3%)

Query: 6   FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFP 63
           F  L  + P    A + +  + +   D    TW V  +T    T L+  P  L+M+T F 
Sbjct: 143 FVFLLSLCPS---AHADMPGLTSHILDDGSQTWSVPVQTLVFLTSLTFLPAFLLMMTSFT 199

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
           R +IVF +LR  +G    PPN +++ LALF+TF++MSPT ++  +    P    ++    
Sbjct: 200 RIVIVFGLLRNALGTPYAPPNQILLGLALFLTFFIMSPTFEKIYKDAYVPFSQEKMNMED 259

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
           AI + + P   FM N  R  DL LF  +AH S         + I  RIL+PSF+ SEL+ 
Sbjct: 260 AILKGSMPLKKFMLNQIRTPDLELFSKLAHISSYK----NKNDIPMRILLPSFITSELKT 315

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
           +F+IGF I +PFLIID++VA+++MA+GMMM+PP++ISLPFK++ FVL+DGW LL+ +L  
Sbjct: 316 AFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPSTISLPFKLMLFVLVDGWQLLITSLAH 375

Query: 244 SF 245
           SF
Sbjct: 376 SF 377


>gi|219681460|ref|YP_002467845.1| flagellar biosynthetic protein FliP [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471135|ref|ZP_05635134.1| type III secretion system protein [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219624303|gb|ACL30458.1| flagellar biosynthetic protein FliP [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 379

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 99/242 (40%), Positives = 146/242 (60%), Gaps = 9/242 (3%)

Query: 6   FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFP 63
           F  L  + P    A + +  + +   D    TW V  +T    T L+  P  L+M+T F 
Sbjct: 143 FVFLLSLCPS---AHADMPGLTSHILDDGSQTWSVPVQTLVFLTSLTFLPAFLLMMTSFT 199

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
           R +IVF +LR  +G    PPN +++ LALF+TF++MSPT ++  +    P    ++    
Sbjct: 200 RIVIVFGLLRNALGTPYAPPNQILLGLALFLTFFIMSPTFEKIYKDAYVPFSQEKMNMED 259

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
           AI + + P   FM N  R  DL LF  +AH S         + I  RIL+PSF+ SEL+ 
Sbjct: 260 AILKGSMPLKKFMLNQIRTPDLELFSKLAHISSYK----NKNDIPMRILLPSFITSELKT 315

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
           +F+IGF I +PFLIID++VA+++MA+GMMM+PP++ISLPFK++ FVL+DGW LL+ +L  
Sbjct: 316 AFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPSTISLPFKLMLFVLVDGWQLLITSLAH 375

Query: 244 SF 245
           SF
Sbjct: 376 SF 377


>gi|219682016|ref|YP_002468400.1| flagellar biosynthetic protein FliP [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219621749|gb|ACL29905.1| flagellar biosynthetic protein FliP [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|311085824|gb|ADP65906.1| putative bifunctional flagellar biosynthesis protein FliO/FliP
           [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)]
 gi|311086397|gb|ADP66478.1| putative bifunctional flagellar biosynthesis protein FliO/FliP
           [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)]
 gi|311087553|gb|ADP67632.1| putative bifunctional flagellar biosynthesis protein FliO/FliP
           [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)]
          Length = 379

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 99/242 (40%), Positives = 146/242 (60%), Gaps = 9/242 (3%)

Query: 6   FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFP 63
           F  L  + P    A + +  + +   D    TW V  +T    T L+  P  L+M+T F 
Sbjct: 143 FVFLLSLCPS---AHADMPGLTSHILDDGSQTWSVPVQTLVFLTSLTFLPAFLLMMTSFT 199

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
           R +IVF +LR  +G    PPN +++ LALF+TF++MSPT ++  +    P    ++    
Sbjct: 200 RIVIVFGLLRNALGTPYAPPNQILLGLALFLTFFIMSPTFEKIYKDAYVPFSQEKMNMED 259

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
           AI + + P   FM N  R  DL LF  +AH S         + I  RIL+PSF+ SEL+ 
Sbjct: 260 AILKGSMPLKKFMLNQIRTPDLELFSKLAHISSYK----NKNDIPMRILLPSFITSELKT 315

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
           +F+IGF I +PFLIID++VA+++MA+GMMM+PP++ISLPFK++ FVL+DGW LL+ +L  
Sbjct: 316 AFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPSTISLPFKLMLFVLVDGWQLLITSLAH 375

Query: 244 SF 245
           SF
Sbjct: 376 SF 377


>gi|229827384|ref|ZP_04453453.1| hypothetical protein GCWU000182_02772 [Abiotrophia defectiva ATCC
           49176]
 gi|229788322|gb|EEP24436.1| hypothetical protein GCWU000182_02772 [Abiotrophia defectiva ATCC
           49176]
          Length = 283

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 87/220 (39%), Positives = 140/220 (63%), Gaps = 4/220 (1%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
           +    D       +R     T+L +AP +LI++T F R I+V   +R+ +   + PPN V
Sbjct: 67  LTTNGDQGGLAATLRIVLALTVLGLAPSILILLTSFTRIIVVLHFVRSALTTQTTPPNQV 126

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           ++ LALF+T+++M+P   +     ++PL + +I    A +   +P   FM   T  KD+ 
Sbjct: 127 LVGLALFLTWFIMAPIFMQINTEALKPLTDGKINFEQAYEVGIKPLRTFMYKQTNTKDIR 186

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
           LF+D+A       ++   + I   +LIP+F+ISELR +F IGF I +PFL+IDM+V++ +
Sbjct: 187 LFLDIAGI----DEVKDMEEIPTNVLIPAFIISELRAAFIIGFCIYIPFLVIDMVVSSTL 242

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           M+MGMMMLPPT+IS+PFK++ F+++DGW L++ NLVKSF+
Sbjct: 243 MSMGMMMLPPTTISMPFKILLFIMVDGWDLVIGNLVKSFV 282


>gi|206889470|ref|YP_002249866.1| flagellar biosynthetic protein FliP [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741408|gb|ACI20465.1| flagellar biosynthetic protein FliP [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 335

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 101/241 (41%), Positives = 148/241 (61%), Gaps = 8/241 (3%)

Query: 5   CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
            F  L +++P L FA        +    L   +  +      T+LS  P +LIM+T F R
Sbjct: 102 LFSCLLILSPTLCFAAPQ-----SAQGGLFGFSSAIDILVFITLLSFLPAVLIMMTSFTR 156

Query: 65  FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
            +IV S+LR  +G  SVPPN VII LALF+T ++MSPT+DR       PL   +I    A
Sbjct: 157 IVIVLSLLRQALGTPSVPPNQVIIGLALFLTLFIMSPTVDRVYNEAYLPLSKKEINMEEA 216

Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
           I + + PF  FM   TREKDL+LF  ++ +  +         +  +I++P+F + EL+R+
Sbjct: 217 ISKASVPFKEFMLKQTREKDLALFFKLSKTEVK---PATPMDLPMKIVVPAFALGELKRA 273

Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           FEIGFLI LPFL+ID++VA+I+++MGM M+PP  IS+PFK++ FVL+DGW L++ +L   
Sbjct: 274 FEIGFLIFLPFLVIDIVVASILLSMGMFMVPPVMISMPFKLLLFVLVDGWQLIIGSLAGG 333

Query: 245 F 245
           F
Sbjct: 334 F 334


>gi|28211318|ref|NP_782262.1| flagellar biosynthesis protein FliP [Clostridium tetani E88]
 gi|28203758|gb|AAO36199.1| flagellar biosynthetic protein fliP [Clostridium tetani E88]
          Length = 261

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 92/253 (36%), Positives = 151/253 (59%), Gaps = 15/253 (5%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIP-----------ADLSISTWIVRTFGIFTILSIA 52
           +    +  +   L F + +L     IP            D       ++ F + T LSI 
Sbjct: 12  FLVIGIVFLLTLLCFQQKALAAPGQIPIPRINISPGDGGDPKTYVDNLKLFLMITALSIL 71

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P  ++M+T F R  +VF  LR  MG    PPN V++ LALF+T ++M+P      +  IQ
Sbjct: 72  PSFIVMMTSFVRISVVFGFLRNAMGTQQSPPNQVLVGLALFLTIFIMTPVYQIINKEAIQ 131

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P + ++I +  A +  ++P   FM   TREKDL LF+++++     T     +++   ++
Sbjct: 132 PFVKSEINQEQAFETGSKPLREFMLKQTREKDLKLFVEISNIDKNIT----KENVPLYVV 187

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           +PSF+ISEL+ +F+IGFL+ +PFL+ID++VA+++M+MGM MLPP  +SLPFK++ FV++D
Sbjct: 188 VPSFIISELKTAFQIGFLLYIPFLVIDLVVASVLMSMGMFMLPPVMVSLPFKLLLFVMVD 247

Query: 233 GWSLLVENLVKSF 245
           GW LL+++L+ SF
Sbjct: 248 GWHLLIKSLIMSF 260


>gi|307318918|ref|ZP_07598349.1| flagellar biosynthetic protein FliP [Sinorhizobium meliloti AK83]
 gi|12057226|gb|AAB81419.2| FliP [Sinorhizobium meliloti]
 gi|306895332|gb|EFN26087.1| flagellar biosynthetic protein FliP [Sinorhizobium meliloti AK83]
          Length = 245

 Score =  222 bits (567), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 142/247 (57%), Positives = 195/247 (78%), Gaps = 3/247 (1%)

Query: 1   MIRY-CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           M+R+  F    +    +  A+S   D++N P D S+++WI+RTFG+ T+LS+AP +LIMV
Sbjct: 1   MLRFATFIIAMMAMSGIAGAQSFPADILNTPVDGSVASWIIRTFGLLTVLSVAPGILIMV 60

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T FPRF+I F+ILR+GMG+ + P N++++SLALFMTFYVM+PT DR+   GI PL+ N+I
Sbjct: 61  TSFPRFVIAFAILRSGMGLATTPSNMIMVSLALFMTFYVMAPTFDRAWRDGIDPLLKNEI 120

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           +ET AIQR++EPF  FM  NTR+KDL LF+D+A    +   +  ++ ++ R ++P+FMIS
Sbjct: 121 SETDAIQRMSEPFREFMLANTRDKDLQLFIDIAR--EKGQTVVVDEKVDLRAVVPAFMIS 178

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           E+RR FEIGFLI+LPFL+ID+IVATI MAMGMMMLPPT+ISLPFK++FFVLIDGW+LLV 
Sbjct: 179 EIRRGFEIGFLIMLPFLVIDLIVATITMAMGMMMLPPTAISLPFKILFFVLIDGWNLLVG 238

Query: 240 NLVKSFI 246
           +LV+SFI
Sbjct: 239 SLVRSFI 245


>gi|227355990|ref|ZP_03840382.1| flagellar biosynthetic protein [Proteus mirabilis ATCC 29906]
 gi|227163978|gb|EEI48880.1| flagellar biosynthetic protein [Proteus mirabilis ATCC 29906]
          Length = 256

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 99/248 (39%), Positives = 152/248 (61%), Gaps = 7/248 (2%)

Query: 1   MIRYCFFALFLVT---PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLI 57
           + R+  FA  L+    P   FA+        +P      +  V+T    T L   P +L+
Sbjct: 11  LKRWPLFASVLILSLLPSHAFAQFPSVISHPLPGGGQNWSLPVQTLIFITALGFIPAVLL 70

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           M+T F R IIV  +LR  +G  S PPN V++ LALFMTF++M+P  D+  +    P   +
Sbjct: 71  MMTSFTRIIIVLGLLRNALGTPSAPPNQVVLGLALFMTFFIMAPVFDKIYQDAYLPFSED 130

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
           +IT   A+   ++P   FM   TRE DL+LF  +A +    T     D +  RIL+P+++
Sbjct: 131 KITFEQALDNGSQPLRQFMMQQTRETDLALFARLADAPAFET----RDSVPMRILVPAYI 186

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
            SEL+ +F+IGF+I +PFLIID++VA+++MA+GMMM+PP ++SLPFK++ FVL+DGW L+
Sbjct: 187 TSELKTAFQIGFMIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGWQLI 246

Query: 238 VENLVKSF 245
           + +L +SF
Sbjct: 247 LGSLAQSF 254


>gi|225375339|ref|ZP_03752560.1| hypothetical protein ROSEINA2194_00964 [Roseburia inulinivorans DSM
           16841]
 gi|225212828|gb|EEG95182.1| hypothetical protein ROSEINA2194_00964 [Roseburia inulinivorans DSM
           16841]
          Length = 273

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 100/231 (43%), Positives = 147/231 (63%), Gaps = 5/231 (2%)

Query: 15  ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74
                 S+    ++   D    +  V+   + TILS+AP +LIM+T + R IIV   LRT
Sbjct: 47  TRAAEDSTNGLTISYNNDGGSLSAPVKMLLVLTILSLAPSILIMLTSYTRIIIVLHFLRT 106

Query: 75  GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134
            +G  + PPN V+I+LALF+TF++M PT  +     IQPL   +IT   A      P   
Sbjct: 107 AIGTQTAPPNQVLIALALFLTFFIMWPTFQQINTEAIQPLDKGEITTEEAFTVAQGPIRE 166

Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
           FM   T+EKDL LF+D++  ++        D +    LIP+F++SELR +F IGF+I +P
Sbjct: 167 FMYGQTQEKDLKLFVDISDETY-----DSYDDVPMTTLIPAFILSELRAAFIIGFVIYIP 221

Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           F++IDM+VA+++M+MGMMMLPPT+ISLPFK++ F+L DGW L++ +LVK+F
Sbjct: 222 FIVIDMVVASVLMSMGMMMLPPTTISLPFKILLFILADGWDLVIGSLVKTF 272


>gi|311086976|gb|ADP67056.1| putative bifunctional flagellar biosynthesis protein FliO/FliP
           [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)]
          Length = 379

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 96/229 (41%), Positives = 142/229 (62%), Gaps = 6/229 (2%)

Query: 19  AKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
           A + +  + +   D    TW V  +T    T L+  P  L+M+T F R +IVF +LR  +
Sbjct: 153 AHADMPGLTSHILDDGSQTWSVPVQTLVFLTSLTFLPAFLLMMTSFTRIVIVFGLLRNAL 212

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G    PPN +++ LALF+TF++MSPT ++  +    P    ++    AI + + P   FM
Sbjct: 213 GTPYAPPNQILLGLALFLTFFIMSPTFEKIYKDAYVPFSQEKMNMEDAILKGSMPLKKFM 272

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
            N  R  DL LF  +AH S         + I  RIL+PSF+ SEL+ +F+IGF I +PFL
Sbjct: 273 LNQIRTPDLELFSKLAHISSYK----NKNDIPMRILLPSFITSELKTAFQIGFTIFIPFL 328

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IID++VA+++MA+GMMM+PP++ISLPFK++ FVL+DGW LL+ +L  SF
Sbjct: 329 IIDLVVASVLMALGMMMVPPSTISLPFKLMLFVLVDGWQLLITSLAHSF 377


>gi|118589975|ref|ZP_01547379.1| flagellar biosynthesis protein [Stappia aggregata IAM 12614]
 gi|118437472|gb|EAV44109.1| flagellar biosynthesis protein [Stappia aggregata IAM 12614]
          Length = 247

 Score =  222 bits (567), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 134/247 (54%), Positives = 173/247 (70%), Gaps = 1/247 (0%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIP-ADLSISTWIVRTFGIFTILSIAPILLIMV 59
           M R     L LV      A         +P  + S S  I++   + T+LS+AP +LIMV
Sbjct: 1   MSRLLVAGLVLVAMTGAAAAQVPDLSALLPAGEGSASGRIIQMIALLTVLSLAPGILIMV 60

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F RF+I FS LR+G+G+ + P NL++ISLALFMTFYVM+PT D++ E G+QPLMNN+I
Sbjct: 61  TSFTRFVIAFSFLRSGIGLQTTPGNLILISLALFMTFYVMAPTFDKAWEQGVQPLMNNEI 120

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           +E  A  R+  PF  FM +  RE+DL LF D+A     + +    + ++ R+LIP+FMIS
Sbjct: 121 SEEEAYVRITTPFRDFMLSQVREEDLVLFDDLAAGRVTDNEAASAEEVDLRVLIPAFMIS 180

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           ELRR FEIGFLI LPFL+IDMIVATI M+MGMMMLPPT ISLPFK +FFVLIDGW+LLV 
Sbjct: 181 ELRRGFEIGFLIALPFLVIDMIVATITMSMGMMMLPPTVISLPFKALFFVLIDGWNLLVG 240

Query: 240 NLVKSFI 246
           +LV+SF+
Sbjct: 241 SLVRSFL 247


>gi|15887892|ref|NP_353573.1| flagellar biosynthesis protein FliP [Agrobacterium tumefaciens str.
           C58]
 gi|2494560|sp|Q44344|FLIP_AGRT5 RecName: Full=Flagellar biosynthetic protein fliP
 gi|1086567|gb|AAB68974.1| FliP [Agrobacterium tumefaciens]
 gi|2459720|gb|AAB71796.1| FliP [Agrobacterium tumefaciens]
 gi|15155484|gb|AAK86358.1| flagellar biosynthetic protein [Agrobacterium tumefaciens str. C58]
          Length = 245

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 147/246 (59%), Positives = 193/246 (78%), Gaps = 3/246 (1%)

Query: 1   MIRYCF-FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           MIR+    A+ L  P L  A+    D+ N   D S++ WI+RTFG+ T+LS+AP +LIMV
Sbjct: 1   MIRFLVTIAVLLALPGLANAQQFPSDLFNTQIDGSVAAWIIRTFGLLTVLSVAPGILIMV 60

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T FPRF+I FSILR+GMG+ S P N++++S+A+FMTFYVMSPT D++   G+QPL+ NQI
Sbjct: 61  TSFPRFVIAFSILRSGMGLASTPSNMILLSMAMFMTFYVMSPTFDKAWTDGVQPLLQNQI 120

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
            E  A+QR+AEPF  FM  NTR+KDL LF+D+A    R   +  ++ ++YR+L+P+FM+S
Sbjct: 121 NEQQAVQRIAEPFRTFMNANTRDKDLKLFVDIAR--ERGQVVMTDNVVDYRVLVPAFMLS 178

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           E+RR FEIGFLIILPFL+ID+IVATI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV 
Sbjct: 179 EIRRGFEIGFLIILPFLVIDLIVATITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVG 238

Query: 240 NLVKSF 245
           +LV+SF
Sbjct: 239 SLVRSF 244


>gi|197285499|ref|YP_002151371.1| flagellar biosynthetic protein [Proteus mirabilis HI4320]
 gi|194682986|emb|CAR43419.1| flagellar biosynthetic protein [Proteus mirabilis HI4320]
          Length = 256

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 99/248 (39%), Positives = 152/248 (61%), Gaps = 7/248 (2%)

Query: 1   MIRYCFFALFLVT---PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLI 57
           + R+  FA  L+    P   FA+        +P      +  V+T    T L   P +L+
Sbjct: 11  LKRWPLFASVLILSLLPSHAFAQFPSVISHPLPGGGQSWSLPVQTLIFITALGFIPAVLL 70

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           M+T F R IIV  +LR  +G  S PPN V++ LALFMTF++M+P  D+  +    P   +
Sbjct: 71  MMTSFTRIIIVLGLLRNALGTPSAPPNQVVLGLALFMTFFIMAPVFDKIYQDAYLPFSED 130

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
           +IT   A+   ++P   FM   TRE DL+LF  +A +    T     D +  RIL+P+++
Sbjct: 131 KITFEQALDNGSQPLRQFMMQQTRETDLALFARLADAPAFET----RDSVPMRILVPAYI 186

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
            SEL+ +F+IGF+I +PFLIID++VA+++MA+GMMM+PP ++SLPFK++ FVL+DGW L+
Sbjct: 187 TSELKTAFQIGFMIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGWQLI 246

Query: 238 VENLVKSF 245
           + +L +SF
Sbjct: 247 LGSLAQSF 254


>gi|150395491|ref|YP_001325958.1| flagellar biosynthesis protein FliP [Sinorhizobium medicae WSM419]
 gi|150027006|gb|ABR59123.1| flagellar biosynthetic protein FliP [Sinorhizobium medicae WSM419]
          Length = 245

 Score =  222 bits (565), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 140/247 (56%), Positives = 194/247 (78%), Gaps = 3/247 (1%)

Query: 1   MIRY-CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           M+R+  F    +    +  A+    D++N P D S+++WI+RTFG+ T+LS+AP +LIMV
Sbjct: 1   MLRFATFIIAMMAMSGIAGAQGFPADILNTPVDGSVASWIIRTFGLLTVLSVAPGILIMV 60

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T FPRF+I F+ILR+GMG+ + P N++++SLALFMTFYVM+PT DR+   GI PL+ N+I
Sbjct: 61  TSFPRFVIAFAILRSGMGLATTPSNMIMVSLALFMTFYVMAPTFDRAWRDGIDPLLKNEI 120

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           +ET A+QR++EPF  FM  NTR+KDL LF+D+A    +   +  ++ ++ R ++P+FMIS
Sbjct: 121 SETEAMQRMSEPFREFMLANTRDKDLQLFIDIAQ--EKGQTVVVDEKVDLRAVVPAFMIS 178

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           E+RR FEIGFLI+LPFL+ID+IVATI MAMGMMMLPPT+ISLPFK++FFVLIDGW+LLV 
Sbjct: 179 EIRRGFEIGFLIMLPFLVIDLIVATITMAMGMMMLPPTAISLPFKILFFVLIDGWNLLVG 238

Query: 240 NLVKSFI 246
           +LV+SFI
Sbjct: 239 SLVRSFI 245


>gi|15964421|ref|NP_384774.1| flagellar biosynthesis protein FliP [Sinorhizobium meliloti 1021]
 gi|307311563|ref|ZP_07591204.1| flagellar biosynthetic protein FliP [Sinorhizobium meliloti BL225C]
 gi|17380428|sp|P37827|FLIP_RHIME RecName: Full=Flagellar biosynthetic protein fliP
 gi|15073598|emb|CAC45240.1| Flagellar biosynthetic transmembrane protein [Sinorhizobium
           meliloti 1021]
 gi|306899580|gb|EFN30209.1| flagellar biosynthetic protein FliP [Sinorhizobium meliloti BL225C]
          Length = 245

 Score =  222 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 141/247 (57%), Positives = 195/247 (78%), Gaps = 3/247 (1%)

Query: 1   MIRY-CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           M+R+  F    +    +  A+S   D++N P D S+++WI+RTFG+ T+LS+AP +LIMV
Sbjct: 1   MLRFATFIIAMMAMSGIAGAQSFPADILNTPVDGSVASWIIRTFGLLTVLSVAPGILIMV 60

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T FPRF+I F+ILR+GMG+ + P N++++SLALFMTFYVM+PT DR+   GI PL+ N+I
Sbjct: 61  TSFPRFVIAFAILRSGMGLATTPSNMIMVSLALFMTFYVMAPTFDRAWRDGIDPLLKNEI 120

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           +ET A+QR++EPF  FM  NTR+KDL LF+D+A    +   +  ++ ++ R ++P+FMIS
Sbjct: 121 SETDAMQRMSEPFREFMVANTRDKDLQLFIDIAR--EKGQTVVVDEKVDLRAVVPAFMIS 178

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           E+RR FEIGFLI+LPFL+ID+IVATI MAMGMMMLPPT+ISLPFK++FFVLIDGW+LLV 
Sbjct: 179 EIRRGFEIGFLIMLPFLVIDLIVATITMAMGMMMLPPTAISLPFKILFFVLIDGWNLLVG 238

Query: 240 NLVKSFI 246
           +LV+SFI
Sbjct: 239 SLVRSFI 245


>gi|291519582|emb|CBK74803.1| flagellar biosynthetic protein FliP [Butyrivibrio fibrisolvens
           16/4]
          Length = 284

 Score =  222 bits (565), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 93/215 (43%), Positives = 142/215 (66%), Gaps = 5/215 (2%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
            +    +  +R   + TIL+++P +LIM+T F R +IV   +R  +G  + PPN V+I L
Sbjct: 74  GEDGNFSSTLRMLLVLTILTLSPSILIMLTSFTRCVIVLHFVRAAIGTNTAPPNQVLIGL 133

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           ALF+T ++MSP L       I P    +IT+  AI     P   FM   T+ KDL+LF D
Sbjct: 134 ALFLTLFIMSPVLTTIKTEAIDPFDAGEITQQEAIDAAIAPVREFMYGQTQTKDLNLFCD 193

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           +A  ++      + D + + +++P+F++SELR +F IGFLI +PF++IDM+VA+++M+MG
Sbjct: 194 IAGITY-----EEYDEVPFTVVVPAFILSELRTAFIIGFLIYVPFIVIDMVVASVLMSMG 248

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMMLPPT+ISLPFK++ FVL+DGW L++  LVK+F
Sbjct: 249 MMMLPPTTISLPFKILLFVLVDGWDLVIGGLVKTF 283


>gi|227820864|ref|YP_002824834.1| flagellar biosynthesis protein FliP [Sinorhizobium fredii NGR234]
 gi|227339863|gb|ACP24081.1| flagellar biosynthetic protein FliP [Sinorhizobium fredii NGR234]
          Length = 245

 Score =  221 bits (564), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 139/240 (57%), Positives = 189/240 (78%), Gaps = 2/240 (0%)

Query: 6   FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65
           F    +    +  A+S   D++N P D S+++WI+RTFG+ T+LS+AP +LIMVT FPRF
Sbjct: 7   FIVAMMAMSGIAGAQSFPADILNTPVDGSVASWIIRTFGLLTVLSVAPGILIMVTSFPRF 66

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
           +I F+ILR+GMG+ + P N++++SLALFMTFYVM+PT DR+   GI PL+ N+I+ET A+
Sbjct: 67  VIAFAILRSGMGLATTPSNMIMVSLALFMTFYVMAPTFDRAWREGIDPLLKNEISETEAL 126

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
            RV+EPF  FM  NTR+KDL LF+D+A    +   +  +D ++ R ++P+FMISE+RR F
Sbjct: 127 PRVSEPFREFMLANTRDKDLQLFIDIAR--EKGQTVVVDDKVDLRAVVPAFMISEIRRGF 184

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           EIGFLI+LPFL+ID+IV+TI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV +LV+SF
Sbjct: 185 EIGFLIMLPFLVIDLIVSTITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVGSLVRSF 244


>gi|91776320|ref|YP_546076.1| flagellar biosynthesis protein FliP [Methylobacillus flagellatus
           KT]
 gi|91710307|gb|ABE50235.1| flagellar biosynthetic protein FliP [Methylobacillus flagellatus
           KT]
          Length = 250

 Score =  221 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 95/224 (42%), Positives = 139/224 (62%), Gaps = 4/224 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
            L +    P      +  ++T  + T L+  P  L+M+T F R IIV S+LR  +G  S 
Sbjct: 30  GLINSQPAPGGGQNYSLSIQTLILLTSLTFLPAALLMMTGFTRIIIVLSLLRQALGTQSS 89

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PPN V++ LALF+TF+VM P  +R      QP    +IT   A+ R + P   FM   TR
Sbjct: 90  PPNQVLVGLALFLTFFVMGPVFERIYTEAYQPFDEERITMQEAMVRGSIPLKEFMLKQTR 149

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           E DL+LF  M+    R   +   + +  R+L+P+F+ SEL+ +F+IGF I +PFLIIDM+
Sbjct: 150 ESDLALFFKMS----RADAVATPEEVPLRVLVPAFVTSELKTAFQIGFAIFIPFLIIDMV 205

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           VA+I+M+MGMMM+ P  ++LPFK++ FVL+DGW LL+ +L +SF
Sbjct: 206 VASILMSMGMMMVSPAIVALPFKLMLFVLVDGWQLLLGSLAQSF 249


>gi|92116943|ref|YP_576672.1| flagellar biosynthesis protein FliP [Nitrobacter hamburgensis X14]
 gi|91799837|gb|ABE62212.1| flagellar biosynthetic protein FliP [Nitrobacter hamburgensis X14]
          Length = 251

 Score =  221 bits (563), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 115/246 (46%), Positives = 168/246 (68%), Gaps = 7/246 (2%)

Query: 3   RYCFFALFLVTPELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           R   F L L+    +   +   D+   +    +  ++   ++   + T+LSIAP +LIM+
Sbjct: 8   RRVLFVLVLIAAGSLADPAFAQDISINLGGAGNGGVTERAIQLIALLTVLSIAPSILIMM 67

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R ++V S+LRT +G  + PPN VII+LA+F+T +VM PTL +S + GI+PL+ NQI
Sbjct: 68  TSFTRIVVVLSLLRTALGTATAPPNSVIIALAMFLTAFVMGPTLQKSYDDGIKPLVANQI 127

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           T   A+QR + P   FM+ N RE+DL LF+D++      T       +  RIL+P+FMIS
Sbjct: 128 TVEEALQRASVPLRGFMQKNVREQDLKLFIDLSGEPPPATPA----DLSLRILMPAFMIS 183

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+R+FEIGFL+ LPFLIID++VA+++M+MGMMMLPP  +SLPFK+IFFVL+DGWSL+  
Sbjct: 184 ELKRAFEIGFLLFLPFLIIDLVVASVLMSMGMMMLPPVVVSLPFKLIFFVLVDGWSLVAG 243

Query: 240 NLVKSF 245
           +LV+S+
Sbjct: 244 SLVQSY 249


>gi|134294170|ref|YP_001117905.1| flagellar biosynthesis protein FliP [Burkholderia vietnamiensis G4]
 gi|134137327|gb|ABO53070.1| flagellar biosynthetic protein FliP [Burkholderia vietnamiensis G4]
          Length = 253

 Score =  221 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 97/246 (39%), Positives = 155/246 (63%), Gaps = 7/246 (2%)

Query: 3   RYCFFALFLVTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMV 59
           R+    +  + P L  A+++     N    P   +  +  V+T  + T+LS  P +L+M+
Sbjct: 11  RFAPVLILGLFPALACAQAAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMLLMM 70

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R IIV S+LR  +G  + PPN V++ LA+F+TF+VMSP LD++   G +P  +  +
Sbjct: 71  TSFTRIIIVLSLLRQALGTATTPPNQVLLGLAMFLTFFVMSPVLDKAYNDGYKPFSDGSL 130

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
               A+QR   PF  FM   TRE DL+LF  ++    +   +   + +   +L+P+F+ S
Sbjct: 131 PMEQAVQRGVAPFKGFMLKQTRETDLALFAKIS----KAAPMQGPEDVPLSLLVPAFVTS 186

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+  F+IGF I +PFLIID++VA+++M+MGMMM+ P+++SLPFK++ FVL+DGW LL+ 
Sbjct: 187 ELKTGFQIGFTIFIPFLIIDLVVASVLMSMGMMMVSPSTVSLPFKLMLFVLVDGWQLLIG 246

Query: 240 NLVKSF 245
           +L +SF
Sbjct: 247 SLAQSF 252


>gi|240145488|ref|ZP_04744089.1| flagellar biosynthetic protein FliP [Roseburia intestinalis L1-82]
 gi|257202303|gb|EEV00588.1| flagellar biosynthetic protein FliP [Roseburia intestinalis L1-82]
          Length = 299

 Score =  221 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 98/230 (42%), Positives = 149/230 (64%), Gaps = 11/230 (4%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
           ++I  D +     VR   + TI++++P LLIM+T + R +IV   LRT +G  + PPN +
Sbjct: 69  ISINNDEAGVASEVRALLLLTIIAVSPSLLIMLTSYTRIVIVLHFLRTAIGTQTAPPNQI 128

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           +I LALF+TF++M PT  +  E  IQPL N  IT   A++    P   FM    + KD+ 
Sbjct: 129 LIGLALFLTFFIMWPTFQQINENAIQPLDNGDITIEEALKEAEVPIRQFMYGQVQRKDVK 188

Query: 147 LFMDMA-----------HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195
           LF+DMA              +  +  +  D I   I+IPSF+I ELR++F +GF+I +PF
Sbjct: 189 LFVDMAGDSYDIDSAALEKEYEESGQSAYDAIPMTIMIPSFVIGELRQAFIMGFVIYIPF 248

Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++IDM+VA+++M+MGMMMLPPT+ISLPFK++ F+L DGW+L++ ++VK+F
Sbjct: 249 IVIDMVVASVLMSMGMMMLPPTTISLPFKILLFILADGWNLVIGSVVKTF 298


>gi|115523568|ref|YP_780479.1| flagellar biosynthesis protein FliP [Rhodopseudomonas palustris
           BisA53]
 gi|115517515|gb|ABJ05499.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris
           BisA53]
          Length = 254

 Score =  221 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 114/244 (46%), Positives = 168/244 (68%), Gaps = 6/244 (2%)

Query: 4   YCFFALFLVTPELVFAKSSLHDV-MNIPAD-LSISTWIVRTFGIFTILSIAPILLIMVTC 61
           +    L L     +   +S  D+ +N+  +   ++   ++   + T+LSIAP +LIM+T 
Sbjct: 11  FSLLLLILTAAGSLIDPASAQDISINLGGNTGGVTERAIQLIALLTVLSIAPSILIMMTS 70

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F R ++V S+LRT +G  + PPN VI++LALF+T +VM P L +S + GI+PL+ NQIT 
Sbjct: 71  FTRIVVVLSLLRTALGTATAPPNAVILALALFLTGFVMGPVLQKSYDDGIKPLVANQITV 130

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
             A +R  +P   FM+ N REKDL LF+D++      T     D +  RIL+P+FMISEL
Sbjct: 131 EQAFERAVDPLRGFMQKNVREKDLKLFLDLSGEPPPAT----PDAMSLRILVPAFMISEL 186

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
           +R+FEIGFL+ LPFL+ID++VA+++M+MGMMMLPP  +SLPFK+IFFVL+DGWSL+  +L
Sbjct: 187 KRAFEIGFLLFLPFLVIDLVVASVLMSMGMMMLPPVVVSLPFKLIFFVLVDGWSLVAGSL 246

Query: 242 VKSF 245
           V+S+
Sbjct: 247 VQSY 250


>gi|92114088|ref|YP_574016.1| flagellar biosynthesis protein FliP [Chromohalobacter salexigens
           DSM 3043]
 gi|91797178|gb|ABE59317.1| flagellar biosynthetic protein FliP [Chromohalobacter salexigens
           DSM 3043]
          Length = 249

 Score =  221 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 105/246 (42%), Positives = 154/246 (62%), Gaps = 5/246 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSIS-TWIVRTFGIFTILSIAPILLIMV 59
           M+R     L L  P   + +     V     D     +  ++T    + L+  P LL+ +
Sbjct: 6   MLRCGLAVLLLAWPAFGWGQEISGIVSEPTGDGGQQWSLSLQTLLFLSSLAFLPALLLGM 65

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           TCF R IIV S+LRT +G  S PPN V++ LALFMTF++MSP LDR  E    P    +I
Sbjct: 66  TCFTRIIIVLSLLRTAIGTQSTPPNQVLLGLALFMTFFIMSPVLDRVHEQAWVPFSEERI 125

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           +   A+++ ++PF  FM   TRE DL+LF  MA       ++   + +  R+LIP+F+ S
Sbjct: 126 SLEQALEQGSQPFREFMFGQTRETDLALFARMAD----ADEMQGPEDVPMRLLIPAFLTS 181

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+ +F+IGF I +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ 
Sbjct: 182 ELKTAFQIGFSIFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLIG 241

Query: 240 NLVKSF 245
           +L +SF
Sbjct: 242 SLAESF 247


>gi|325291933|ref|YP_004277797.1| flagellar biosynthesis protein FliP [Agrobacterium sp. H13-3]
 gi|325059786|gb|ADY63477.1| flagellar biosynthesis protein FliP [Agrobacterium sp. H13-3]
          Length = 245

 Score =  221 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 146/246 (59%), Positives = 192/246 (78%), Gaps = 3/246 (1%)

Query: 1   MIRYCF-FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           MIR+    A+ +  P L  A+    D+ N   D S++ WI+RTFG+ T+LS+AP +LIMV
Sbjct: 1   MIRFLVTIAVLVALPGLANAQQFPTDLFNTQIDGSVAAWIIRTFGLLTVLSVAPGILIMV 60

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T FPRF+I FSILR+GMG+ S P N++++S+A+FMTFYVMSPT D++   G+QPL+ NQI
Sbjct: 61  TSFPRFVIAFSILRSGMGLASTPSNMILLSMAMFMTFYVMSPTFDKAWTDGVQPLLQNQI 120

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
            E  AI R+AEPF  FM  NTR+KDL LF+D+A    R   +  ++ ++YR+L+P+FM+S
Sbjct: 121 NEQQAIGRIAEPFRTFMNANTRDKDLKLFVDIAR--ERGQVVMTDNVVDYRVLVPAFMLS 178

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           E+RR FEIGFLIILPFL+ID+IVATI MAMGMMMLPPTSISLPFK++FFVLIDGW+LLV 
Sbjct: 179 EIRRGFEIGFLIILPFLVIDLIVATITMAMGMMMLPPTSISLPFKILFFVLIDGWNLLVG 238

Query: 240 NLVKSF 245
           +LV+SF
Sbjct: 239 SLVRSF 244


>gi|307731352|ref|YP_003908576.1| flagellar biosynthetic protein FliP [Burkholderia sp. CCGE1003]
 gi|307585887|gb|ADN59285.1| flagellar biosynthetic protein FliP [Burkholderia sp. CCGE1003]
          Length = 277

 Score =  221 bits (563), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 103/246 (41%), Positives = 153/246 (62%), Gaps = 7/246 (2%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVT 60
               AL L  P L FA+++     N    P   +  +  V+T  + T+LS  P +++M+T
Sbjct: 36  VALPALMLALPTLSFAQTAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMVLMMT 95

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R IIV S+LR  +G  + PPN V++ LALF+T +VMSP LD++   G +P     + 
Sbjct: 96  SFTRIIIVLSLLRQALGTTTTPPNQVLVGLALFLTLFVMSPVLDKAYTDGYKPFSEGTVP 155

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
             TA+ R   PF  FM   TRE DL+LF  ++H       +   + +   +L+PSF+ SE
Sbjct: 156 METAVSRGLAPFKTFMLRQTRESDLALFARISH----AAPMQGPEDVPLSLLVPSFVTSE 211

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+  F+IGF I +PFLIIDM+VA+++M+MGMMM+ P +ISLPFK++ FVL+DGW LL+ +
Sbjct: 212 LKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATISLPFKLMLFVLVDGWQLLLGS 271

Query: 241 LVKSFI 246
           L +SF+
Sbjct: 272 LAQSFV 277


>gi|291536019|emb|CBL09131.1| flagellar biosynthetic protein FliP [Roseburia intestinalis M50/1]
 gi|291538511|emb|CBL11622.1| flagellar biosynthetic protein FliP [Roseburia intestinalis XB6B4]
          Length = 299

 Score =  221 bits (563), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 98/230 (42%), Positives = 149/230 (64%), Gaps = 11/230 (4%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
           ++I  D +     VR   + TI++++P LLIM+T + R +IV   LRT +G  + PPN +
Sbjct: 69  ISINNDEAGVASEVRALLLLTIIAVSPSLLIMLTSYTRIVIVLHFLRTAIGTQTAPPNQI 128

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           +I LALF+TF++M PT  +  E  IQPL N  IT   A++    P   FM    + KD+ 
Sbjct: 129 LIGLALFLTFFIMWPTFQQINENAIQPLDNGDITIEEALKEAEVPIRQFMYGQVQRKDVK 188

Query: 147 LFMDMA-----------HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195
           LF+DMA              +  +  +  D I   I+IPSF+I ELR++F +GF+I +PF
Sbjct: 189 LFVDMAGDSYDIDSAALEKEYEESGQSAYDAIPMTIMIPSFIIGELRQAFIMGFVIYIPF 248

Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++IDM+VA+++M+MGMMMLPPT+ISLPFK++ F+L DGW+L++ ++VK+F
Sbjct: 249 IVIDMVVASVLMSMGMMMLPPTTISLPFKILLFILADGWNLVIGSVVKTF 298


>gi|78064698|ref|YP_367467.1| flagellar biosynthesis protein FliP [Burkholderia sp. 383]
 gi|77965443|gb|ABB06823.1| Flagellar transport protein FliP [Burkholderia sp. 383]
          Length = 253

 Score =  221 bits (562), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 99/246 (40%), Positives = 156/246 (63%), Gaps = 7/246 (2%)

Query: 3   RYCFFALFLVTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMV 59
           R+    +  + P L FA+++     N    P   +  +  V+T  + T+LS  P +L+M+
Sbjct: 11  RFAPVLILCLAPALAFAQANGLPAFNASPGPHGGTTYSLSVQTMLLLTMLSFLPAMLLMM 70

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R IIV S+LR  +G  + PPN V++ LA+F+TF+VMSP LDR+   G +P  +  +
Sbjct: 71  TSFTRIIIVLSLLRQALGTATTPPNQVLVGLAMFLTFFVMSPVLDRAYNDGYKPFSDGSM 130

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
               A+QR   PF  FM   TRE DL+LF  ++    +   +   + +   +L+P+F+ S
Sbjct: 131 PMEQAVQRGVAPFKTFMLKQTRETDLALFAKIS----KAAPMQGPEDVPLSLLVPAFVTS 186

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+  F+IGF + +PFLIIDM+VA+++M+MGMMM+ P+++SLPFK++ FVL+DGW LL+ 
Sbjct: 187 ELKTGFQIGFTVFIPFLIIDMVVASVLMSMGMMMVSPSTVSLPFKLMLFVLVDGWQLLIG 246

Query: 240 NLVKSF 245
           +L +SF
Sbjct: 247 SLAQSF 252


>gi|206561840|ref|YP_002232605.1| flagellar biosynthesis protein FliP [Burkholderia cenocepacia
           J2315]
 gi|198037882|emb|CAR53826.1| flagellar biosynthetic protein FliP precursor [Burkholderia
           cenocepacia J2315]
          Length = 253

 Score =  221 bits (562), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 99/246 (40%), Positives = 155/246 (63%), Gaps = 7/246 (2%)

Query: 3   RYCFFALFLVTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMV 59
           R     +  + P L +A+++     N    P   +  +  V+T  + T+LS  P +L+M+
Sbjct: 11  RVAPVLILCLAPALAYAQANGLPAFNASPGPHGGTTYSLSVQTMLLLTMLSFLPAMLLMM 70

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R IIV S+LR  +G  + PPN V++ LA+F+TF+VMSP LDR+   G +P  +  +
Sbjct: 71  TSFTRIIIVLSLLRQALGTATTPPNQVLVGLAMFLTFFVMSPVLDRAYNDGYKPFSDGSM 130

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
               A+QR   PF  FM   TRE DL+LF  ++    +   +   D +   +L+P+F+ S
Sbjct: 131 PMEQAVQRGVAPFKTFMLKQTRETDLALFAKIS----KAAPMQGPDDVPLSLLVPAFVTS 186

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+  F+IGF + +PFLIIDM+VA+++M+MGMMM+ P+++SLPFK++ FVL+DGW LL+ 
Sbjct: 187 ELKTGFQIGFTVFIPFLIIDMVVASVLMSMGMMMVSPSTVSLPFKLMLFVLVDGWQLLIG 246

Query: 240 NLVKSF 245
           +L +SF
Sbjct: 247 SLAQSF 252


>gi|253682024|ref|ZP_04862821.1| flagellar biosynthetic protein FliP [Clostridium botulinum D str.
           1873]
 gi|253561736|gb|EES91188.1| flagellar biosynthetic protein FliP [Clostridium botulinum D str.
           1873]
          Length = 257

 Score =  221 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 92/248 (37%), Positives = 151/248 (60%), Gaps = 9/248 (3%)

Query: 4   YCFFALFLVTPELVFAKSS------LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLI 57
              FAL ++     +A         ++  ++   +       ++   + T+LS+ P  L+
Sbjct: 11  LVIFALVILGATKAYAAPDTIPVPKVNISVDKATNPKDYVDNIKLLVMLTVLSLLPSFLV 70

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           M+T F R IIV   +R  +G    PPN ++I +ALF+T ++M+PT     +  I+P + N
Sbjct: 71  MMTSFTRIIIVLGFMRNALGTQQAPPNQILIGIALFLTIFIMAPTYKTINKEAIKPFIEN 130

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
           +IT   AI   ++P   FM   TR+KDL LF+D++ +          D++   ++IPSF+
Sbjct: 131 KITGQQAIDNASKPMREFMLKQTRDKDLELFLDISKTDKAKI---TKDNVPMYVVIPSFI 187

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
           ISEL+ +F+IGFL+ +PFLIID++VA+++M+MGM MLPP  ISLPFK++ FV++DGW LL
Sbjct: 188 ISELKTAFKIGFLLYIPFLIIDIVVASVLMSMGMFMLPPVMISLPFKILLFVMVDGWYLL 247

Query: 238 VENLVKSF 245
           V++L+  +
Sbjct: 248 VKSLIMGY 255


>gi|27380927|ref|NP_772456.1| flagellar biosynthesis protein FliP [Bradyrhizobium japonicum USDA
           110]
 gi|27354093|dbj|BAC51081.1| flagellar biosynthetic protein [Bradyrhizobium japonicum USDA 110]
          Length = 250

 Score =  221 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 118/244 (48%), Positives = 167/244 (68%), Gaps = 5/244 (2%)

Query: 3   RYCFFALFLVTPELV-FAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
           R  F ++ +    L   A +    +        ++   ++   + T+LSIAP +LIM+T 
Sbjct: 9   RVLFLSVLIGAASLAGLAHAQDISINLGGQGGGVTERAIQLIALLTVLSIAPSILIMMTS 68

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F R ++V S+LRT MG  + PPN VII+LA+F+TF+VM P L +S + GI+PL+ NQI  
Sbjct: 69  FTRIVVVLSLLRTAMGTATAPPNSVIIALAMFLTFFVMGPVLQKSYDEGIRPLVANQIGV 128

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
             A+QR + P   FM+ N REKDL LF+D++      T     D +  RILIP+FMISEL
Sbjct: 129 EDALQRASVPLRGFMQKNVREKDLKLFLDLSGEPPPAT----PDELALRILIPAFMISEL 184

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
           +R+FEIGFL+ LPFLIID++VA+++M+MGMMMLPP +ISLPFK+IFFVL+DGWSL+  +L
Sbjct: 185 KRAFEIGFLLFLPFLIIDLVVASVLMSMGMMMLPPATISLPFKLIFFVLVDGWSLVAGSL 244

Query: 242 VKSF 245
           V+S+
Sbjct: 245 VQSY 248


>gi|107021595|ref|YP_619922.1| flagellar biosynthesis protein FliP [Burkholderia cenocepacia AU
           1054]
 gi|116688061|ref|YP_833684.1| flagellar biosynthesis protein FliP [Burkholderia cenocepacia
           HI2424]
 gi|170731411|ref|YP_001763358.1| flagellar biosynthesis protein FliP [Burkholderia cenocepacia
           MC0-3]
 gi|254246638|ref|ZP_04939959.1| Flagellar biosynthesis pathway, component FliP [Burkholderia
           cenocepacia PC184]
 gi|105891784|gb|ABF74949.1| flagellar biosynthetic protein FliP [Burkholderia cenocepacia AU
           1054]
 gi|116646150|gb|ABK06791.1| flagellar biosynthetic protein FliP [Burkholderia cenocepacia
           HI2424]
 gi|124871414|gb|EAY63130.1| Flagellar biosynthesis pathway, component FliP [Burkholderia
           cenocepacia PC184]
 gi|169814653|gb|ACA89236.1| flagellar biosynthetic protein FliP [Burkholderia cenocepacia
           MC0-3]
          Length = 253

 Score =  221 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 98/246 (39%), Positives = 155/246 (63%), Gaps = 7/246 (2%)

Query: 3   RYCFFALFLVTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMV 59
           R     +  + P L +A+++     N    P   +  +  V+T  + T+LS  P +L+M+
Sbjct: 11  RVAPVLILCLAPALAYAQANGLPAFNASPGPHGGTTYSLSVQTMLLLTMLSFLPAMLLMM 70

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R IIV S+LR  +G  + PPN V++ LA+F+TF+VMSP LDR+   G +P  +  +
Sbjct: 71  TSFTRIIIVLSLLRQALGTATTPPNQVLVGLAMFLTFFVMSPVLDRAYNDGYKPFSDGSM 130

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
               A+QR   PF  FM   TRE DL+LF  ++    +   +   + +   +L+P+F+ S
Sbjct: 131 PMEQAVQRGVAPFKTFMLKQTRETDLALFAKIS----KAAPMQGPEDVPLSLLVPAFVTS 186

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+  F+IGF + +PFLIIDM+VA+++M+MGMMM+ P+++SLPFK++ FVL+DGW LL+ 
Sbjct: 187 ELKTGFQIGFTVFIPFLIIDMVVASVLMSMGMMMVSPSTVSLPFKLMLFVLVDGWQLLIG 246

Query: 240 NLVKSF 245
           +L +SF
Sbjct: 247 SLAQSF 252


>gi|114765260|ref|ZP_01444392.1| flagellar biosynthesis protein P [Pelagibaca bermudensis HTCC2601]
 gi|114542395|gb|EAU45423.1| flagellar biosynthesis protein P [Roseovarius sp. HTCC2601]
          Length = 282

 Score =  221 bits (562), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 117/221 (52%), Positives = 161/221 (72%), Gaps = 7/221 (3%)

Query: 33  LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
            ++S  I++     T+LS+AP LL+++T F RF+IVFS+LR+ +G+   PPN+V+ S+AL
Sbjct: 56  ATLSGRIIQLIAAMTVLSLAPGLLVIMTSFTRFVIVFSMLRSALGLNQSPPNMVLTSMAL 115

Query: 93  FMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
           FMTF+VM P  + + E G+QPLM N ITE  A+ RV EPF +FM  NTREKDL+LF D+A
Sbjct: 116 FMTFFVMQPVFEDAWEGGVQPLMANSITEEQALMRVGEPFKLFMYANTREKDLALFRDIA 175

Query: 153 HSSHRNTDITK-------NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
             S       +        + + +R L+P+FMISELRR+F IGFLI LPFL+ID+IVA++
Sbjct: 176 ARSEGTVPPEESAPAPQSAEDVGWRELVPAFMISELRRAFSIGFLIYLPFLVIDLIVASV 235

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +M+ GMMMLPP  ISLPFKVIFFVLIDGW +L  +L++S++
Sbjct: 236 LMSAGMMMLPPVLISLPFKVIFFVLIDGWYMLAGSLMESYL 276


>gi|209884533|ref|YP_002288390.1| flagellar biosynthetic protein FliP [Oligotropha carboxidovorans
           OM5]
 gi|209872729|gb|ACI92525.1| flagellar biosynthetic protein FliP [Oligotropha carboxidovorans
           OM5]
          Length = 253

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 107/245 (43%), Positives = 166/245 (67%), Gaps = 6/245 (2%)

Query: 3   RYCFFALFLVTPELVFAKSSLHDVMNIPA--DLSISTWIVRTFGIFTILSIAPILLIMVT 60
           R  F ++ +    L  A ++    +N     +  ++   ++   + T+LSIAP +L+M+T
Sbjct: 9   RVLFLSVLIAAATLATAAAAQDISINFGGQGNGGVTERAIQLIALLTVLSIAPSILVMMT 68

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R ++V S+LRT +G  + PPN V+I+LALF+T +VM P L +S + G++P++ N+++
Sbjct: 69  SFTRIVVVLSLLRTALGTATAPPNSVMIALALFLTGFVMGPVLQKSYDEGVKPVIANELS 128

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
                +R   P   FM+ N REKDL LFMD++      T     + +  RILIP+FMISE
Sbjct: 129 VEQGFERAVGPLRGFMQKNVREKDLKLFMDLSGEPPPAT----PEEMSLRILIPAFMISE 184

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+R+FEIGFL+ LPFLIID++V++++M+MGMMMLPP  +SLPFK+IFFVL+DGW+L+  +
Sbjct: 185 LKRAFEIGFLLFLPFLIIDLVVSSVLMSMGMMMLPPVVVSLPFKLIFFVLVDGWALVAGS 244

Query: 241 LVKSF 245
           LV+S+
Sbjct: 245 LVQSY 249


>gi|271500076|ref|YP_003333101.1| flagellar biosynthetic protein FliP [Dickeya dadantii Ech586]
 gi|270343631|gb|ACZ76396.1| flagellar biosynthetic protein FliP [Dickeya dadantii Ech586]
          Length = 258

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 97/245 (39%), Positives = 155/245 (63%), Gaps = 4/245 (1%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           ++RY   ++ L+      A+        +P      +  V+T    T LS  P +L+M+T
Sbjct: 16  LLRYPAASMLLLIAPHALAQLPSIISHPLPNGGQSWSLPVQTLIFITALSFIPAVLLMMT 75

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
           CF R IIV S+LR  +G  + PPN V++ L+LF+TF+VMSP L+R  +   +P   ++I+
Sbjct: 76  CFTRIIIVLSLLRNALGTPTAPPNQVLLGLSLFLTFFVMSPVLNRIYDEAYRPFSEDKIS 135

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              AI + ++P   FM   TRE DL+LF  +A        +   + +  R+L+P+++ SE
Sbjct: 136 MEVAIDKGSKPLREFMLRQTREADLALFTRLAQIP----SLQGPEAVPMRVLVPAYVTSE 191

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +F+IGF I +PFL+ID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +
Sbjct: 192 LKTAFQIGFTIFIPFLLIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGS 251

Query: 241 LVKSF 245
           L +SF
Sbjct: 252 LAQSF 256


>gi|167770202|ref|ZP_02442255.1| hypothetical protein ANACOL_01545 [Anaerotruncus colihominis DSM
           17241]
 gi|167667524|gb|EDS11654.1| hypothetical protein ANACOL_01545 [Anaerotruncus colihominis DSM
           17241]
          Length = 270

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 93/243 (38%), Positives = 143/243 (58%), Gaps = 4/243 (1%)

Query: 7   FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
             L +       A   +   +        +  ++    + T+L++AP +LIM+T F R I
Sbjct: 27  LLLLVCCTITAHAAPMVTVDLGSGDASGNAFGLIDMLFVVTLLALAPSILIMMTSFTRII 86

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IV S LR  +G+   PPN V+I LALF+T ++M P +++  E   QP    QIT+  A+ 
Sbjct: 87  IVLSFLRNALGIQQTPPNQVLIGLALFLTLFIMFPVINQINEEAYQPYRQGQITQEEAVT 146

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD----ITKNDHIEYRILIPSFMISELR 182
           R   P   FM   TR  D++LF+ +A+                 +   I+IP+F+ SEL+
Sbjct: 147 RGIRPLKEFMIRQTRTDDVNLFLSIANDKRPPEQAITIPEDLTELGMEIVIPAFITSELK 206

Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
           ++F IGFL+ +PFLIIDM+V++ +M+MGM+MLPP+ ISLPFK++ FV++DGW LL+ NLV
Sbjct: 207 QAFMIGFLLFIPFLIIDMVVSSTLMSMGMVMLPPSMISLPFKIMMFVMVDGWGLLLGNLV 266

Query: 243 KSF 245
           + F
Sbjct: 267 RGF 269


>gi|148256782|ref|YP_001241367.1| flagellar biosynthesis protein FliP [Bradyrhizobium sp. BTAi1]
 gi|146408955|gb|ABQ37461.1| Flagellar transport protein FliP [Bradyrhizobium sp. BTAi1]
          Length = 234

 Score =  220 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 113/216 (52%), Positives = 159/216 (73%), Gaps = 4/216 (1%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P +  ++   V+   + T+LSIAP +LIM+T F R ++V S+LRT MG  + PPN VII+
Sbjct: 21  PGNGGVTERAVQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLRTAMGTATAPPNAVIIA 80

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           LA+F+T +VM P L +S + G++PL+ NQI    A+QR + P   FM+ N REKDL LFM
Sbjct: 81  LAMFLTAFVMGPVLQKSYDDGVRPLIENQIGVEDALQRASVPLRGFMQKNVREKDLKLFM 140

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
           D++  +   T     D +  RIL+P+FMISEL+R+FEIGFL+ LPFLIID++VA+++M+M
Sbjct: 141 DLSGEAPPAT----PDELSLRILVPAFMISELKRAFEIGFLLFLPFLIIDLVVASVLMSM 196

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMMLPP  +SLPFK+IFFVL+DGWSL+  +LV+S+
Sbjct: 197 GMMMLPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY 232


>gi|226327730|ref|ZP_03803248.1| hypothetical protein PROPEN_01603 [Proteus penneri ATCC 35198]
 gi|225203434|gb|EEG85788.1| hypothetical protein PROPEN_01603 [Proteus penneri ATCC 35198]
          Length = 256

 Score =  220 bits (560), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 96/242 (39%), Positives = 150/242 (61%), Gaps = 4/242 (1%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
           +    + L+ P   FA+        +P      +  V+T    T L   P +L+M+T F 
Sbjct: 17  FASVLVLLLLPTSAFAQFPGIITQPLPGGGQSWSLPVQTLIFITALGFIPAVLLMMTSFT 76

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
           R IIV  +LR  +G  S PPN V++ LALFMTF++M+P  D+  +    P   +QIT   
Sbjct: 77  RIIIVLGLLRNALGTPSAPPNQVVLGLALFMTFFIMAPVFDKIYQDAYMPFTEDQITFEQ 136

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
           A++  ++P   FM   TRE DL+LF  +A +    T     + +  RIL+P+++ SEL+ 
Sbjct: 137 ALENGSKPLRQFMMQQTRETDLALFARLADAPAFET----RESVPMRILVPAYITSELKT 192

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
           +F+IGF+I +PFLIID++VA+++MA+GMMM+PP ++SLPFK++ FVL+DGW L++ +L +
Sbjct: 193 AFQIGFMIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGWQLILGSLAQ 252

Query: 244 SF 245
           SF
Sbjct: 253 SF 254


>gi|170698077|ref|ZP_02889158.1| flagellar biosynthetic protein FliP [Burkholderia ambifaria
           IOP40-10]
 gi|170137038|gb|EDT05285.1| flagellar biosynthetic protein FliP [Burkholderia ambifaria
           IOP40-10]
          Length = 253

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 98/246 (39%), Positives = 155/246 (63%), Gaps = 7/246 (2%)

Query: 3   RYCFFALFLVTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMV 59
           R+    +  + P L  A+++     N    P   +  +  V+T  + T+LS  P +L+M+
Sbjct: 11  RFAPVLILGLVPALACAQAAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMLLMM 70

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R IIV S+LR  +G  + PPN V++ LA+F+TF+VMSP LDR+   G +P  +  +
Sbjct: 71  TSFTRIIIVLSLLRQALGTATTPPNQVLVGLAMFLTFFVMSPVLDRAYADGYKPFSDGSM 130

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
               A++R   PF  FM   TRE DL+LF  ++    +   +   + +   +L+P+F+ S
Sbjct: 131 PMEQAVRRGVAPFKTFMLKQTRETDLALFAKIS----KAAPMQGPEDVPLSLLVPAFVTS 186

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+  F+IGF I +PFLIIDM+VA+++M+MGMMM+ P+++SLPFK++ FVL+DGW LL+ 
Sbjct: 187 ELKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPSTVSLPFKLMLFVLVDGWQLLIG 246

Query: 240 NLVKSF 245
           +L +SF
Sbjct: 247 SLAQSF 252


>gi|167645329|ref|YP_001682992.1| flagellar biosynthesis protein FliP [Caulobacter sp. K31]
 gi|167347759|gb|ABZ70494.1| flagellar biosynthetic protein FliP [Caulobacter sp. K31]
          Length = 266

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 104/245 (42%), Positives = 164/245 (66%), Gaps = 6/245 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           +I      + ++ P +  A+S+++  +++     +S  +V+  G+ T+LS+AP ++IM T
Sbjct: 21  IISVLAGLITVLGPAVAVAQSAIN--VDLGTGAGLSERVVQMVGLLTVLSLAPSIVIMTT 78

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R ++V  +LRT +G+   PPN VIISLALF+T  VM PT ++S + GI+PL++ QI 
Sbjct: 79  SFVRIVVVLGLLRTAIGVQQSPPNPVIISLALFLTAIVMGPTFEKSYDDGIKPLLDKQIE 138

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A    A P  VFM     + DL+LF+ ++      T +        +++ P+FMISE
Sbjct: 139 MPEAFDAAAAPVKVFMLRQVDQDDLALFIRLSKIEKPKTAV----DTPLKVVTPAFMISE 194

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+R+FEIGFL+ +PFL+ID++VA+++M+MGMMMLPP ++SLPFK+IFFVL+DGW L+  +
Sbjct: 195 LKRAFEIGFLLFIPFLVIDLVVASVLMSMGMMMLPPATVSLPFKLIFFVLVDGWRLVAGS 254

Query: 241 LVKSF 245
           LV+SF
Sbjct: 255 LVESF 259


>gi|323341374|ref|ZP_08081618.1| flagellar biosynthetic protein FliP [Lactobacillus ruminis ATCC
           25644]
 gi|323091251|gb|EFZ33879.1| flagellar biosynthetic protein FliP [Lactobacillus ruminis ATCC
           25644]
          Length = 268

 Score =  219 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 104/254 (40%), Positives = 149/254 (58%), Gaps = 9/254 (3%)

Query: 1   MIRYCFFALFLVTPELV--FAKSSLHDVMNI------PADLSISTWIVRTFGIFTILSIA 52
           ++ +   A FL+   L    A  S  DV N         D   S+ IV TF I T+LSI 
Sbjct: 14  LVLFGMMACFLIAVRLPDHVAAVSTSDVTNTVNKLINGNDQGSSSKIVDTFVIMTLLSII 73

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P++LIM T F R I+V S +R+ +G    PPN V+I LALF+T + M P  +      IQ
Sbjct: 74  PLILIMTTSFTRIIVVLSFVRSSLGTQQNPPNQVLIGLALFLTLFTMRPVYNDIYHNAIQ 133

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM-AHSSHRNTDITKNDHIEYRI 171
           P   N+IT+     R       FM     +KD+ LF D+   +  +         I + +
Sbjct: 134 PYNENKITQQEVFDRSENRMKEFMYKQANKKDVKLFKDLDQKNERKKIKYRTYKDIPFTV 193

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           + P+F++SEL+ +F IGFL+ +PF+IID++VA+I+M+MGM+ML P  ISLPFK++ FVL+
Sbjct: 194 MAPAFILSELKTAFSIGFLLFIPFMIIDLVVASILMSMGMIMLSPIMISLPFKILLFVLV 253

Query: 232 DGWSLLVENLVKSF 245
           DGW LLVE+LV+SF
Sbjct: 254 DGWYLLVESLVQSF 267


>gi|85716540|ref|ZP_01047510.1| flagellar biosynthesis protein [Nitrobacter sp. Nb-311A]
 gi|85696541|gb|EAQ34429.1| flagellar biosynthesis protein [Nitrobacter sp. Nb-311A]
          Length = 251

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 114/245 (46%), Positives = 166/245 (67%), Gaps = 6/245 (2%)

Query: 3   RYCFFALFLVTPELVFAKSSLHDVMNIPADL--SISTWIVRTFGIFTILSIAPILLIMVT 60
           R  F  + +    L     +    +N+       +S   ++   + T+LSIAP +LIM+T
Sbjct: 9   RVSFIVVLIAAGSLADPAFAQDISINLGGAGTSGVSERAIQLIALLTVLSIAPSILIMMT 68

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R ++V S+LRT +G  + PPN VII+LA+F+T +VM PTL +S + GI+PL+ N+IT
Sbjct: 69  SFTRIVVVLSLLRTALGTATAPPNSVIIALAVFLTAFVMGPTLQKSYDDGIKPLVANEIT 128

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A+QR + P   FM+ N RE+DL LFMD++      T       +  RIL+P+FMISE
Sbjct: 129 VEEALQRASVPLRGFMQKNVREQDLKLFMDLSGEPPPKTPA----ELSLRILMPAFMISE 184

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+R+FEIGFL+ LPFLIID++VA+++M+MGMMMLPP  +SLPFK+IFFVL+DGW+L+  +
Sbjct: 185 LKRAFEIGFLLFLPFLIIDLVVASVLMSMGMMMLPPVVVSLPFKLIFFVLVDGWALVAGS 244

Query: 241 LVKSF 245
           LV+S+
Sbjct: 245 LVQSY 249


>gi|163744333|ref|ZP_02151693.1| flagellar biosynthetic protein FliP [Oceanibulbus indolifex HEL-45]
 gi|161381151|gb|EDQ05560.1| flagellar biosynthetic protein FliP [Oceanibulbus indolifex HEL-45]
          Length = 278

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 109/225 (48%), Positives = 157/225 (69%), Gaps = 3/225 (1%)

Query: 25  DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
                  + ++S  IV+   + T+LSIAP LL+++T F RF+IV S+LR+ +G+   PPN
Sbjct: 49  SAPGSDENANLSGRIVQFIALMTVLSIAPGLLVVMTSFTRFVIVLSMLRSALGLNQTPPN 108

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
           +V+ SLALFMTF+VM P  + + E G+QPL+ N I E  A++R+A PF  FM  NTR +D
Sbjct: 109 IVLTSLALFMTFFVMQPVFEDAYEAGVQPLLENAIAEEQALERIAAPFKSFMYVNTRPED 168

Query: 145 LSLFMDMAHSSHRNTD---ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
            +LF+ +A +     +       +   +R L+P+FMISELRR+F IGFLI LPF+ ID+I
Sbjct: 169 YALFLRIAPADEEAEETPLPASAEEATFRHLVPAFMISELRRAFTIGFLIYLPFVAIDLI 228

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +A+++M+ GMMMLPP  ISLPFKVIFFVLIDGW +L  +L++S++
Sbjct: 229 IASVLMSAGMMMLPPVLISLPFKVIFFVLIDGWYMLAGSLIESYV 273


>gi|307701549|ref|ZP_07638566.1| flagellar biosynthetic protein FliP [Mobiluncus mulieris FB024-16]
 gi|307613228|gb|EFN92480.1| flagellar biosynthetic protein FliP [Mobiluncus mulieris FB024-16]
          Length = 462

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 81/209 (38%), Positives = 133/209 (63%), Gaps = 4/209 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           T  V  F + T+LS+AP LL+M+T F +  IV ++ R  +G+  +PP  V+  LA+F++ 
Sbjct: 257 TTTVLVFLLITVLSVAPSLLLMMTSFTKIFIVLAMARNALGLNQIPPTQVLSGLAIFLSL 316

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           ++M+PT++      +QPL + +I      +   +PF  FM   TRE+D++L    A+  +
Sbjct: 317 FIMAPTVNTLWTDVVQPLTDGKIEVQEVFKLGEKPFRDFMGPLTREEDIALMTRAANRPN 376

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
                   D   +  L+P+FMISE+R +F IGF++ +PFL+ID++V   +M+MGMMMLPP
Sbjct: 377 PE----SLDKTPFTTLVPAFMISEVRSAFIIGFVVFIPFLVIDLVVGAALMSMGMMMLPP 432

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             +SLPFKV+ FV++DGW +L + L+ ++
Sbjct: 433 VMVSLPFKVLLFVMVDGWGMLTQTLIGTY 461


>gi|288962691|ref|YP_003452985.1| flagellar biosynthetic protein [Azospirillum sp. B510]
 gi|288914957|dbj|BAI76441.1| flagellar biosynthetic protein [Azospirillum sp. B510]
          Length = 279

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 107/234 (45%), Positives = 165/234 (70%), Gaps = 11/234 (4%)

Query: 23  LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82
           L  + ++    S+S  IV+   + T+LS+AP LLIMVTCF R I+V S+LR+ +G+   P
Sbjct: 44  LGALGSLADGASLSGRIVQGIVLLTVLSVAPGLLIMVTCFTRIIVVLSLLRSALGLQQSP 103

Query: 83  PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142
           PN+V++SLA+F+TF++M P +D + + G++PL+N Q+T+   ++R+ EPF  FM ++ RE
Sbjct: 104 PNMVLVSLAMFLTFHIMGPVIDSAWQDGLRPLLNEQVTQEQGLERMIEPFRGFMASHVRE 163

Query: 143 KDLSLFM-----------DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
           +DL+ F            + A    ++      + ++ R+L+P+F++SELRR+FEIGFL+
Sbjct: 164 RDLAAFAAFTAKPKPAGEEAAQPPEKDGRPVTAESVDLRLLMPAFLLSELRRAFEIGFLL 223

Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            LPFL+IDM+VA I+MAMGMMMLPP  I+LPFK+IFFVL DGW L+  +L++S+
Sbjct: 224 FLPFLVIDMVVAAILMAMGMMMLPPVMIALPFKIIFFVLTDGWFLIAGSLIRSY 277


>gi|331269328|ref|YP_004395820.1| flagellar biosynthetic protein FliP [Clostridium botulinum
           BKT015925]
 gi|329125878|gb|AEB75823.1| flagellar biosynthetic protein FliP [Clostridium botulinum
           BKT015925]
          Length = 257

 Score =  219 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 91/248 (36%), Positives = 151/248 (60%), Gaps = 9/248 (3%)

Query: 4   YCFFALFLVTPELVFAKSS------LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLI 57
              FAL ++     +A         ++  ++   +       ++   + T+LS+ P  L+
Sbjct: 11  LIVFALVILGATKAYAAPDTIPVPKVNISVDKATNPKDYVDNIKLLVMLTVLSLLPSFLV 70

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           M+T F R IIV   +R  +G    PPN ++I +ALF+T ++M+PT     +  I+P + N
Sbjct: 71  MMTSFTRIIIVLGFMRNALGTQQAPPNQILIGIALFLTIFIMAPTYKTINKEAIKPFLEN 130

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
           +IT   A+   ++P   FM   TR+KDL LF+D++ +          D++   ++IPSF+
Sbjct: 131 KITGQQAMDNASKPMREFMLKQTRDKDLELFLDVSKTDKTKI---TKDNVPMYVVIPSFI 187

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
           ISEL+ +F+IGFL+ +PFLIID++VA+++M+MGM MLPP  ISLPFK++ FV++DGW LL
Sbjct: 188 ISELKTAFKIGFLLYIPFLIIDIVVASVLMSMGMFMLPPVMISLPFKILLFVMVDGWYLL 247

Query: 238 VENLVKSF 245
           V++L+  +
Sbjct: 248 VKSLIMGY 255


>gi|331663444|ref|ZP_08364354.1| flagellar biosynthetic protein FliP [Escherichia coli TA143]
 gi|331059243|gb|EGI31220.1| flagellar biosynthetic protein FliP [Escherichia coli TA143]
          Length = 249

 Score =  219 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 100/247 (40%), Positives = 154/247 (62%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           M R    A  L+      A + L  + + P      +W   V+T    T L+  P +L+M
Sbjct: 1   MRRLLSVAPVLLWLVTPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +
Sbjct: 61  MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   A+++ A+P   FM   TRE DL LF  +A++      +   + +  RIL+P+++ 
Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVT 176

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV
Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 237 GSLAQSF 243


>gi|319944172|ref|ZP_08018448.1| flagellar biosynthetic protein FliP [Lautropia mirabilis ATCC
           51599]
 gi|319742467|gb|EFV94878.1| flagellar biosynthetic protein FliP [Lautropia mirabilis ATCC
           51599]
          Length = 245

 Score =  219 bits (557), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 96/239 (40%), Positives = 152/239 (63%), Gaps = 1/239 (0%)

Query: 8   ALFLVTPELVFAKSSLHDVMNIPADLSIS-TWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
           AL    P  V+A+++L       AD   + +  V+T   F+ LS  P +L+++T F R I
Sbjct: 5   ALLAGAPLDVWAQATLSLQSTAAADGGTTWSVPVQTLLFFSALSFIPAVLLLMTSFTRII 64

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IV S+LR  +G+ + PPN V++ ++LF+T ++MSPTLDR      QPL   +I   TA+Q
Sbjct: 65  IVLSLLRQALGLQASPPNQVLVGISLFLTAFIMSPTLDRIYTEAYQPLAEKRIDFETALQ 124

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           + + P   FM   TR  DL LF  +A     +        + ++ ++P+F+ISEL+ +F+
Sbjct: 125 KGSVPLRDFMLKQTRASDLELFARLARVKAPDDKPLSAQDMPFKAIVPAFVISELKTAFQ 184

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGF+I +PF++ID+I A+++M++GMMM+ P  ++LPFK++ FVL DGW+LLV +LV SF
Sbjct: 185 IGFMIFIPFILIDLICASVLMSLGMMMVSPVLVALPFKLVLFVLADGWNLLVGSLVASF 243


>gi|260466613|ref|ZP_05812801.1| flagellar biosynthetic protein FliP [Mesorhizobium opportunistum
           WSM2075]
 gi|259029619|gb|EEW30907.1| flagellar biosynthetic protein FliP [Mesorhizobium opportunistum
           WSM2075]
          Length = 243

 Score =  219 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 131/245 (53%), Positives = 178/245 (72%), Gaps = 3/245 (1%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           M ++   A  +     + A   L       AD +   +I++ FG+ T+LS+AP LLIMVT
Sbjct: 1   MRKFLLAAALIGATTSIAAAQQLDLGGIGKADGTTVGYIIQMFGLLTVLSVAPGLLIMVT 60

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F RF+I FSILR G+G+ S P NL++ISL+LFMTFYVM+PT D++   G++PLM+NQI+
Sbjct: 61  SFTRFVIAFSILRAGIGLQSTPANLILISLSLFMTFYVMAPTFDQAWNTGVKPLMDNQIS 120

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
           +T A  ++++PF  FM +N R+KD  LF D+A    +       D ++ RIL+P+FMISE
Sbjct: 121 QTEAFDKISDPFRTFMLHNVRDKDFDLFADLARERGQT---VSRDTVDLRILVPAFMISE 177

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           +RR FEIGFLI+LPFL+ID+IVATI MAMGMMMLPPT +SLPFK++FFVLIDGW+LLV +
Sbjct: 178 IRRGFEIGFLIVLPFLVIDLIVATITMAMGMMMLPPTVVSLPFKILFFVLIDGWNLLVGS 237

Query: 241 LVKSF 245
           LV+SF
Sbjct: 238 LVRSF 242


>gi|254559215|ref|YP_003066310.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens
           DM4]
 gi|254266493|emb|CAX22257.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens
           DM4]
          Length = 260

 Score =  219 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 122/221 (55%), Positives = 162/221 (73%), Gaps = 2/221 (0%)

Query: 25  DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
           D +  P + + S  I++   + T+LS+AP LL+MVT F RF +  S LR+G+G+ S P N
Sbjct: 41  DALLPPGNGAASGRIIQLVALLTVLSLAPGLLVMVTSFTRFAVALSFLRSGLGLQSTPAN 100

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
           L ++SLALFMTFYVM+PT DR+   G++PL  N+I+E  A  ++ +PF  FM  + R KD
Sbjct: 101 LFLVSLALFMTFYVMAPTFDRAWNEGVKPLQENRISEEEAFGKIVDPFREFMTQHVRPKD 160

Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
           L  F D+A  +    +    + I+ RILIP+FMISELRR FEIGFLI+LPFL+ID+IV+T
Sbjct: 161 LQTFTDLASRTFPKAEAG--EKIDLRILIPAFMISELRRGFEIGFLIVLPFLVIDIIVST 218

Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IVM+MGMMMLPPT ISLPFKV+FF+LIDGW+LLV  LV+SF
Sbjct: 219 IVMSMGMMMLPPTVISLPFKVLFFILIDGWNLLVSGLVRSF 259


>gi|319406982|emb|CBI80619.1| Flagellar biosynthetic protein fliP [Bartonella sp. 1-1C]
          Length = 250

 Score =  219 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 137/254 (53%), Positives = 190/254 (74%), Gaps = 13/254 (5%)

Query: 1   MIRYCFFAL--FLVTPELVFAK-------SSLHDVMNIPADLSISTWIVRTFGIFTILSI 51
           M R+  F L  FL+   + FA+       S L  + + P   SIS  IV+ FG+ TILS+
Sbjct: 1   MKRFGGFVLMIFLLATTVAFAQKTGAENASGLAGLFSYPQ-GSISGRIVQLFGLLTILSV 59

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP LLIMVT F RF I FS+LRTG+G+ + P NLV+ISLALFM+FYVM+PT + + E G+
Sbjct: 60  APGLLIMVTSFTRFAIAFSLLRTGLGLQTTPSNLVMISLALFMSFYVMAPTFNTAWEDGV 119

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
            PL+NN+I+E  AI+++++PF  FM +  REKDL LF++++ SS +   +     +++R+
Sbjct: 120 HPLVNNKISEQQAIEKISQPFREFMISQVREKDLDLFVNLSDSSLQ---VKTGSDVDFRV 176

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           L+P+FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVL+
Sbjct: 177 LVPAFMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLV 236

Query: 232 DGWSLLVENLVKSF 245
           DGW+LLV +L++SF
Sbjct: 237 DGWNLLVGSLIRSF 250


>gi|147678411|ref|YP_001212626.1| flagellar biosynthesis protein FliP [Pelotomaculum
           thermopropionicum SI]
 gi|146274508|dbj|BAF60257.1| flagellar biosynthesis pathway, component FliP [Pelotomaculum
           thermopropionicum SI]
          Length = 257

 Score =  219 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 94/194 (48%), Positives = 135/194 (69%), Gaps = 4/194 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP  L+M+T F R IIV S+LRT +G+   P N ++I LALF+T ++M+P      +  I
Sbjct: 67  APAFLVMMTSFTRIIIVLSLLRTALGVHQAPANQIVIGLALFLTVFIMAPVYREINDNSI 126

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           QP + NQI++  A +R  +P   FM   TREKDL LF+ +A          K + +   +
Sbjct: 127 QPYLQNQISQEEAQERGVKPLRDFMLRQTREKDLGLFISLAKMEKPE----KPEDVPLHV 182

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           +IPSF+ISEL+ +FEIGFL+ +PFL+IDM+VA+I+M+MGM MLPP  ISLPFK++ FV++
Sbjct: 183 VIPSFIISELKTAFEIGFLLFVPFLVIDMVVASILMSMGMFMLPPVMISLPFKILLFVMV 242

Query: 232 DGWSLLVENLVKSF 245
           DGW L+V++LV+SF
Sbjct: 243 DGWYLVVKSLVESF 256


>gi|295690701|ref|YP_003594394.1| flagellar biosynthetic protein FliP [Caulobacter segnis ATCC 21756]
 gi|295432604|gb|ADG11776.1| flagellar biosynthetic protein FliP [Caulobacter segnis ATCC 21756]
          Length = 265

 Score =  219 bits (557), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 105/245 (42%), Positives = 160/245 (65%), Gaps = 6/245 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           +I         V P    A+S+++  +N+     ++  +V+   + T+LS+AP ++IM T
Sbjct: 21  IISVLAAIACAVMPAAAMAQSAVN--INLGTGAGLTDRVVQLVALMTVLSLAPSIVIMTT 78

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R ++V  +LRT +G+ S PPN VIISLALF+T  VM PT +RS + GI+PL++ QI 
Sbjct: 79  SFVRIVVVLGLLRTAIGVQSSPPNPVIISLALFLTAIVMGPTFERSYDAGIKPLLDKQIE 138

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A    + P   FM +     DL+LF+ ++      T     +    +++ P+FMISE
Sbjct: 139 LPEAFDAASGPVKQFMLSQVDRDDLALFVRLSKIPQPKT----AEDTPIKVVTPAFMISE 194

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+R+FEIGFL+ +PFL+ID++VA+++M+MGMMMLPP +ISLPFK+IFFVL+DGW L+  +
Sbjct: 195 LKRAFEIGFLLFIPFLVIDLVVASVLMSMGMMMLPPATISLPFKLIFFVLVDGWRLVAGS 254

Query: 241 LVKSF 245
           LV+SF
Sbjct: 255 LVESF 259


>gi|157371197|ref|YP_001479186.1| flagellar biosynthesis protein FliP [Serratia proteamaculans 568]
 gi|157322961|gb|ABV42058.1| flagellar biosynthetic protein FliP [Serratia proteamaculans 568]
          Length = 274

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 92/226 (40%), Positives = 147/226 (65%), Gaps = 6/226 (2%)

Query: 22  SLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79
            L  +++ P      +W   V+T  + T LS  P +L+M+T F R IIV  +LR  +G  
Sbjct: 51  QLPGLISQPLAGGGQSWSLPVQTLVLLTSLSFLPAMLLMMTSFTRIIIVLGLLRNALGTP 110

Query: 80  SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139
           S PPN V++ LALF+TF++MSP  D+  +    P   ++I+   A+ + ++P   FM   
Sbjct: 111 SAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISLDVAMDKGSQPLREFMLRQ 170

Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
           TRE DL+L+  +A+       +   + +  RIL+P+++ SEL+ +F+IGF + +PFLIID
Sbjct: 171 TRETDLALYAKLANLP----PLAGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLIID 226

Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 227 LVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 272


>gi|91785622|ref|YP_560828.1| flagellar biosynthesis protein FliP [Burkholderia xenovorans LB400]
 gi|91689576|gb|ABE32776.1| Flagellar transport protein FliP [Burkholderia xenovorans LB400]
          Length = 279

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 104/246 (42%), Positives = 154/246 (62%), Gaps = 7/246 (2%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVT 60
               AL L  P L FA+++     N    P   +  +  V+T  + T+LS  P +++M+T
Sbjct: 38  VALPALMLALPTLSFAQAAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMVLMMT 97

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R IIV S+LR  +G  + PPN V++ LALF+T +VMSP LD++   G +P  +  I 
Sbjct: 98  SFTRIIIVLSLLRQALGTTTTPPNQVLVGLALFLTLFVMSPVLDKAYTDGYKPFSDGTIP 157

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
             TA+ R   PF  FM   TRE DL+LF  ++H       +   + +   +L+PSF+ SE
Sbjct: 158 METAVNRGLAPFKTFMLRQTRESDLALFARISH----AAPMQGPEDVPLSLLVPSFVTSE 213

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+  F+IGF I +PFLIIDM+VA+++M+MGMMM+ P +ISLPFK++ FVL+DGW LL+ +
Sbjct: 214 LKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATISLPFKLMLFVLVDGWQLLLGS 273

Query: 241 LVKSFI 246
           L +SF+
Sbjct: 274 LAQSFV 279


>gi|240137203|ref|YP_002961672.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens
           AM1]
 gi|240007169|gb|ACS38395.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens
           AM1]
          Length = 260

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 123/221 (55%), Positives = 163/221 (73%), Gaps = 2/221 (0%)

Query: 25  DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
           D +  P + + S  I++   + T+LS+AP LL+MVT F RF + FS LR+G+G+ S P N
Sbjct: 41  DALLPPGNGAASGRIIQLVALLTVLSLAPGLLVMVTSFTRFAVAFSFLRSGLGLQSTPAN 100

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
           L ++SLALFMTFYVM+PT DR+   G++PL  N+I+E  A  ++ +PF  FM  + R KD
Sbjct: 101 LFLVSLALFMTFYVMAPTFDRAWNEGVKPLQENRISEEEAFGKIVDPFREFMTQHVRPKD 160

Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
           L  F D+A  +    +    + I+ RILIP+FMISELRR FEIGFLI+LPFL+ID+IV+T
Sbjct: 161 LQTFTDLASRTFPKAEAG--EKIDLRILIPAFMISELRRGFEIGFLIVLPFLVIDIIVST 218

Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IVM+MGMMMLPPT ISLPFKV+FF+LIDGW+LLV  LV+SF
Sbjct: 219 IVMSMGMMMLPPTVISLPFKVLFFILIDGWNLLVSGLVRSF 259


>gi|188579873|ref|YP_001923318.1| flagellar biosynthesis protein FliP [Methylobacterium populi BJ001]
 gi|179343371|gb|ACB78783.1| flagellar biosynthetic protein FliP [Methylobacterium populi BJ001]
          Length = 253

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 126/251 (50%), Positives = 166/251 (66%), Gaps = 10/251 (3%)

Query: 3   RYCFFALFLVTPELVFAKSSLHDVMNIPA--------DLSISTWIVRTFGIFTILSIAPI 54
           R    A+ L              V  +P         + + S  I++   + T+LS+AP 
Sbjct: 4   RLSLAAIVLGLTATAAVAQGAGGVTGVPGLDALLPPGNGAASGRIIQLVALLTVLSLAPG 63

Query: 55  LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
           LL+M+T F RF + FS LR+G+G+ S P NL ++SLALFMTFYVM+PT DR+   G++PL
Sbjct: 64  LLVMMTSFTRFAVAFSFLRSGLGLQSTPANLFLVSLALFMTFYVMAPTFDRAWNEGVKPL 123

Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
             N+I E  A  ++ EPF  FM  + R KDL  F D+A  +    +    + I+ RILIP
Sbjct: 124 QENRIGEEEAFGKIVEPFREFMTQHVRPKDLQTFTDLASRNFPKAEAG--EKIDLRILIP 181

Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234
           +FMISELRR FEIGFLI+LPFL+ID+IV+TIVM+MGMMMLPPT ISLPFKV+FF+LIDGW
Sbjct: 182 AFMISELRRGFEIGFLIVLPFLVIDIIVSTIVMSMGMMMLPPTVISLPFKVLFFILIDGW 241

Query: 235 SLLVENLVKSF 245
           +LLV  LV+SF
Sbjct: 242 NLLVSGLVRSF 252


>gi|313200553|ref|YP_004039211.1| flagellar biosynthetic protein flip [Methylovorus sp. MP688]
 gi|312439869|gb|ADQ83975.1| flagellar biosynthetic protein FliP [Methylovorus sp. MP688]
          Length = 270

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 96/238 (40%), Positives = 152/238 (63%), Gaps = 6/238 (2%)

Query: 10  FLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIA--PILLIMVTCFPRFII 67
            L  P L  A++++  +   P       + +    +  + S++  P +L+M+T F R II
Sbjct: 36  LLAIPALAHAEAAMPLINAAPGSGGSQNYTLSLQTLLLLTSLSFLPAVLLMMTGFTRIII 95

Query: 68  VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
           V S+LR  +G  + PPN V++ LALF+TF+VMSP +D+      QPL  N+IT   A+++
Sbjct: 96  VLSLLRQALGTPTSPPNQVLVGLALFLTFFVMSPVMDKIYVEAYQPLSENKITLQEALEK 155

Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
            A P   FM   TRE D++LFM ++    R+  +   +    R+L+P+FM SEL+ +F+I
Sbjct: 156 GAAPLKTFMLKQTREADIALFMRIS----RSDAVDGPEQTPLRVLVPAFMTSELKTAFQI 211

Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GF I +PFLIIDM+VA+++M+MGMMM+ P  ++LPFK++ FVL+DGW L++ +L +SF
Sbjct: 212 GFAIFIPFLIIDMVVASVLMSMGMMMVSPAIVALPFKLMLFVLVDGWQLVLGSLAESF 269


>gi|307131599|ref|YP_003883615.1| flagellar biosynthesis protein fliP [Dickeya dadantii 3937]
 gi|306529128|gb|ADM99058.1| Flagellar biosynthesis protein fliP [Dickeya dadantii 3937]
          Length = 258

 Score =  218 bits (556), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 98/247 (39%), Positives = 160/247 (64%), Gaps = 8/247 (3%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           ++RY   ++ L+      A+  L  +++ P      +W   ++T    T LS  P +L+M
Sbjct: 16  LLRYPAASILLLIAPHALAQ--LPGIISQPLANGGQSWSLPIQTLVFITSLSFIPAVLLM 73

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +TCF R IIV S+LR  +G  + PPN V++ L+LF+TF+VMSP L+R  +   +P   ++
Sbjct: 74  MTCFTRIIIVLSLLRNALGTPTAPPNQVLLGLSLFLTFFVMSPVLNRIYDEAYRPFSEDK 133

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   AI++ ++P   FM   TRE DL+LF  +A        +   + +  R+L+P+++ 
Sbjct: 134 ISMEVAIEKGSQPLREFMLRQTREADLALFTRLAQIP----SLQGPEAVPMRVLVPAYVT 189

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF I +PFL+ID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+
Sbjct: 190 SELKTAFQIGFTIFIPFLLIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLL 249

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 250 GSLAQSF 256


>gi|316932831|ref|YP_004107813.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris
           DX-1]
 gi|315600545|gb|ADU43080.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris
           DX-1]
          Length = 255

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 112/245 (45%), Positives = 169/245 (68%), Gaps = 7/245 (2%)

Query: 4   YCFFALFLVTPELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           +   ++++V    + A +   D+   +       ++   ++   + T+LSIAP +LIM+T
Sbjct: 11  FIILSVWIVAALAMIAPAQAQDISINLGGQGGPGVTERAIQLIALLTVLSIAPSILIMMT 70

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R ++V S+LRT +G  + PPN VII+LALF+T +VM PTL ++ + GI+PL+ N+I 
Sbjct: 71  SFTRIVVVLSLLRTALGTATAPPNAVIIALALFLTAFVMGPTLQKAYDDGIKPLIANEIG 130

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A+ R + P  VFM+ N REKDL LF+D++      T     + +  RIL+P+F+ISE
Sbjct: 131 VDDALVRASGPMRVFMQKNVREKDLKLFLDLSGEPPPAT----PEDLSLRILMPAFLISE 186

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+R+FEIGFL+ LPFLIID++VA+I+M+MGMMMLPP  +SLPFK+IFFVL+DGWSL+  +
Sbjct: 187 LKRAFEIGFLLFLPFLIIDLVVASILMSMGMMMLPPVVVSLPFKLIFFVLVDGWSLVAGS 246

Query: 241 LVKSF 245
           LV+S+
Sbjct: 247 LVQSY 251


>gi|218778860|ref|YP_002430178.1| flagellar biosynthetic protein FliP [Desulfatibacillum alkenivorans
           AK-01]
 gi|218760244|gb|ACL02710.1| Flagellar biosynthetic protein FliP [Desulfatibacillum alkenivorans
           AK-01]
          Length = 256

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 99/249 (39%), Positives = 156/249 (62%), Gaps = 8/249 (3%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSIS----TWIVRTFGIFTILSIAPILL 56
           M+     A  +V PE+  A +     + I  + +      + +++   + T+L++AP +L
Sbjct: 9   MLMLPALACLVVLPEIAEAATIAVPSVQIGVEEATGPEQVSVLLQIVALLTVLTLAPAIL 68

Query: 57  IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
           +++T F R  +VFS LR  +G   +PPN V++ LALF+T ++M P         +QP +N
Sbjct: 69  MLMTSFTRLAVVFSFLRHALGTQQMPPNQVMVGLALFLTVFIMMPVWKDINTNALQPYLN 128

Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
            +I +  AI++   P   FM  +TREKDL+LF+ ++  +  N        +    LIP+F
Sbjct: 129 EEIGDQEAIEKAVTPLREFMFRHTREKDLALFVKISGEAKPN----SPKDVTIWTLIPAF 184

Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
           +ISEL  +F IGF+I +PFLIIDM+VA+++++MGMMMLPP  ISLPFK++ FVL+DGWSL
Sbjct: 185 VISELTTAFMIGFIIYVPFLIIDMVVASVLLSMGMMMLPPVMISLPFKLMLFVLVDGWSL 244

Query: 237 LVENLVKSF 245
           +V +LV+SF
Sbjct: 245 IVGSLVQSF 253


>gi|239817147|ref|YP_002946057.1| flagellar biosynthetic protein FliP [Variovorax paradoxus S110]
 gi|239803724|gb|ACS20791.1| flagellar biosynthetic protein FliP [Variovorax paradoxus S110]
          Length = 253

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 99/227 (43%), Positives = 146/227 (64%), Gaps = 6/227 (2%)

Query: 21  SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
             L  + + P      TW   V+T  + T LS  P LL+ +T F R +IV  +LRT +G 
Sbjct: 29  QGLPGLTSTPGPGGSQTWSLSVQTLVMLTSLSFLPALLLSMTSFTRILIVLGLLRTAIGT 88

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
            S PPN +++ L+LF+TF+VM+P  D+  +   +P   N+IT   A+++   PF  FM  
Sbjct: 89  QSSPPNQILVGLSLFLTFFVMAPVFDKVHDEAYKPFSENKITAEKALEKGIAPFKSFMLK 148

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
            TRE DL+LF  +A       D+   + +  RIL+PSF+ISEL+ +F+IGF I +PFLII
Sbjct: 149 QTRENDLALFARLAKIP----DMQGPEEVPLRILLPSFVISELKTAFQIGFTIFIPFLII 204

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           D++VA+++M+MGMMM+PP SI+LPFK++ FV+ DGW LL+  L +SF
Sbjct: 205 DLVVASVLMSMGMMMVPPASIALPFKLMLFVMADGWQLLIGALAQSF 251


>gi|218528672|ref|YP_002419488.1| flagellar biosynthesis protein FliP [Methylobacterium
           chloromethanicum CM4]
 gi|218520975|gb|ACK81560.1| flagellar biosynthetic protein FliP [Methylobacterium
           chloromethanicum CM4]
          Length = 260

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 123/221 (55%), Positives = 163/221 (73%), Gaps = 2/221 (0%)

Query: 25  DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
           D +  P + + S  I++   + T+LS+AP LL+MVT F RF + FS LR+G+G+ S P N
Sbjct: 41  DALLPPGNGAASGRIIQLVALLTVLSLAPGLLVMVTSFTRFAVAFSFLRSGLGLQSTPAN 100

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
           L ++SLALFMTFYVM+PT DR+   G++PL  N+I+E  A  ++ +PF  FM  + R KD
Sbjct: 101 LFLVSLALFMTFYVMAPTFDRAWNEGVKPLQENRISEEEAFGKIVDPFREFMTQHVRPKD 160

Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
           L  F D+A  +    +    + I+ RILIP+FMISELRR FEIGFLI+LPFL+ID+IV+T
Sbjct: 161 LQTFTDLASRTFPKAEAG--EKIDLRILIPAFMISELRRGFEIGFLIVLPFLVIDIIVST 218

Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IVM+MGMMMLPPT ISLPFKV+FF+LIDGW+LLV  LV+SF
Sbjct: 219 IVMSMGMMMLPPTVISLPFKVLFFILIDGWNLLVSGLVRSF 259


>gi|163850069|ref|YP_001638112.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens
           PA1]
 gi|163661674|gb|ABY29041.1| flagellar biosynthetic protein FliP [Methylobacterium extorquens
           PA1]
          Length = 260

 Score =  218 bits (556), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 123/221 (55%), Positives = 163/221 (73%), Gaps = 2/221 (0%)

Query: 25  DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
           D +  P + + S  I++   + T+LS+AP LL+MVT F RF + FS LR+G+G+ S P N
Sbjct: 41  DALLPPGNGAASGRIIQLVALLTVLSLAPGLLVMVTSFTRFAVAFSFLRSGLGLQSTPAN 100

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
           L ++SLALFMTFYVM+PT DR+   G++PL  N+I+E  A  ++ +PF  FM  + R KD
Sbjct: 101 LFLVSLALFMTFYVMAPTFDRAWNEGVKPLQENRISEEEAFGKIVDPFREFMTQHVRPKD 160

Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
           L  F D+A  +    +    + I+ RILIP+FMISELRR FEIGFLI+LPFL+ID+IV+T
Sbjct: 161 LQTFTDLASRTFPKAEAG--EKIDLRILIPAFMISELRRGFEIGFLIVLPFLVIDIIVST 218

Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IVM+MGMMMLPPT ISLPFKV+FF+LIDGW+LLV  LV+SF
Sbjct: 219 IVMSMGMMMLPPTVISLPFKVLFFILIDGWNLLVSGLVRSF 259


>gi|187925750|ref|YP_001897392.1| flagellar biosynthesis protein FliP [Burkholderia phytofirmans
           PsJN]
 gi|187716944|gb|ACD18168.1| flagellar biosynthetic protein FliP [Burkholderia phytofirmans
           PsJN]
          Length = 277

 Score =  218 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 102/236 (43%), Positives = 151/236 (63%), Gaps = 7/236 (2%)

Query: 14  PELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
           P L FA+++     N    P   +  +  V+T  + T+LS  P +L+M+T F R IIV S
Sbjct: 46  PTLSFAQAAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTRIIIVLS 105

Query: 71  ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
           +LR  +G  + PPN V++ LALF+T +VMSP LD++   G +P  +  I   TA+ R   
Sbjct: 106 LLRQALGTSTTPPNQVLVGLALFLTLFVMSPVLDKAYTDGYKPFSDGTIPMETAVNRGLA 165

Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
           PF  FM   TRE DL+LF  ++H       +   + +   +L+PSF+ SEL+  F+IGF 
Sbjct: 166 PFKTFMLRQTRESDLALFARISH----AAPMQGPEDVPLSLLVPSFVTSELKTGFQIGFT 221

Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           I +PFLIIDM+VA+++M+MGMMM+ P +ISLPFK++ FVL+DGW LL+ +L +SF+
Sbjct: 222 IFIPFLIIDMVVASVLMSMGMMMVSPATISLPFKLMLFVLVDGWQLLLGSLAQSFV 277


>gi|254504560|ref|ZP_05116711.1| flagellar biosynthetic protein FliP [Labrenzia alexandrii DFL-11]
 gi|222440631|gb|EEE47310.1| flagellar biosynthetic protein FliP [Labrenzia alexandrii DFL-11]
          Length = 255

 Score =  218 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 108/239 (45%), Positives = 163/239 (68%), Gaps = 4/239 (1%)

Query: 7   FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
            A  +    L     +    +    D +++   V+   + T+LS+AP +L+MVT F R +
Sbjct: 18  IAFAMGAIALTLPAHAQEISVGFGDDANLTERAVQLVILLTVLSLAPSILVMVTSFTRIV 77

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           +V S+LR+ +G+ + PPN+V++SLALF++ ++M PTL  + + G+QPL++  I    A +
Sbjct: 78  VVLSLLRSAIGLQTAPPNMVMVSLALFLSAFIMMPTLQAAYDAGVQPLIDGDIEIDQAYE 137

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           R +EPF  FM +  REKDL LF +++      T     + +E  +LIP+FMISELRR+FE
Sbjct: 138 RASEPFRDFMLSQVREKDLMLFQELSGRDAPET----PEDLEMAVLIPAFMISELRRAFE 193

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGFL+ LPFLIID+++A+++M+MGMMMLPP  ISLPFK+IFFVL+DGW+L+  +LVKSF
Sbjct: 194 IGFLLYLPFLIIDLVIASVLMSMGMMMLPPVVISLPFKLIFFVLVDGWNLVAGSLVKSF 252


>gi|311279110|ref|YP_003941341.1| flagellar biosynthetic protein FliP [Enterobacter cloacae SCF1]
 gi|308748305|gb|ADO48057.1| flagellar biosynthetic protein FliP [Enterobacter cloacae SCF1]
          Length = 245

 Score =  218 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 104/247 (42%), Positives = 158/247 (63%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           M R    +L  +      A + L  +++ P      +W   V+T    T L+  P +L+M
Sbjct: 1   MRRLLSLSLAALLLLSPAAFAQLPGLVSQPLPGGGQSWSLPVQTLVFITSLTFLPAILLM 60

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIVF +LR+ +G  S PPN V++ LALF+TF++MSP +D+      QP  +N+
Sbjct: 61  MTSFTRIIIVFGLLRSALGTASAPPNQVLLGLALFLTFFIMSPVIDKIYTDAYQPFNDNK 120

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           IT   AI + A+P   FM   TRE DL+LF  ++HS      I   + +  RIL+P+++ 
Sbjct: 121 ITLEQAIDKGAQPLREFMLRQTREADLALFARLSHS----EPIQGPEAVPMRILLPAYVT 176

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV
Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 237 GSLAQSF 243


>gi|91211166|ref|YP_541152.1| flagellar biosynthesis protein FliP [Escherichia coli UTI89]
 gi|117624088|ref|YP_853001.1| flagellar biosynthesis protein FliP [Escherichia coli APEC O1]
 gi|218558805|ref|YP_002391718.1| flagellar biosynthesis protein FliP [Escherichia coli S88]
 gi|91072740|gb|ABE07621.1| flagellar assembly protein FliP [Escherichia coli UTI89]
 gi|115513212|gb|ABJ01287.1| flagellar assembly protein FliP [Escherichia coli APEC O1]
 gi|218365574|emb|CAR03301.1| flagellar biosynthesis protein [Escherichia coli S88]
 gi|294490075|gb|ADE88831.1| flagellar biosynthetic protein FliP [Escherichia coli IHE3034]
 gi|307626576|gb|ADN70880.1| flagellar biosynthesis protein FliP [Escherichia coli UM146]
 gi|323952441|gb|EGB48314.1| flagellar biosynthetic protein FliP [Escherichia coli H252]
          Length = 245

 Score =  218 bits (555), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 99/247 (40%), Positives = 153/247 (61%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           M R    A  L+      A + L  + + P      +W   V+T    T L+  P +L+M
Sbjct: 1   MRRLLSVAPVLLWLVTPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +
Sbjct: 61  MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFNEEK 120

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   A+++  +P   FM   TRE DL LF  +A++      +   + +  RIL+P+++ 
Sbjct: 121 ISMQEALEKGEQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVT 176

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV
Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 237 GSLAQSF 243


>gi|296445179|ref|ZP_06887139.1| flagellar biosynthetic protein FliP [Methylosinus trichosporium
           OB3b]
 gi|296257353|gb|EFH04420.1| flagellar biosynthetic protein FliP [Methylosinus trichosporium
           OB3b]
          Length = 243

 Score =  218 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 123/245 (50%), Positives = 168/245 (68%), Gaps = 3/245 (1%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           M R       ++ P    A+    + +      + S  IV+   + T+LSIAP LLIMVT
Sbjct: 1   MKRLALLLTLVLLPGCALAEGFDLNALLPAGGGAASGKIVQLLAVLTVLSIAPGLLIMVT 60

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F RF I  S LR+G+G+ S P NLV+ISLALFMTFYVM+PT + + + G++PLM+ +IT
Sbjct: 61  SFTRFAIALSFLRSGLGLQSTPANLVLISLALFMTFYVMAPTFEAAWQDGLKPLMDQKIT 120

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
           E  A +++++PF  FM  N REKD+ LF  ++       D    D +  ++L P+FMISE
Sbjct: 121 EVEAFEKISQPFRKFMIANVREKDIKLFDSLSREPRPAGDY---DKLGLQVLAPAFMISE 177

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           LRR FEIGFLI+LPFL+IDMIVA + M+MGMMMLPPT+ISLP KV+FF+LIDGW+LLV +
Sbjct: 178 LRRGFEIGFLIVLPFLVIDMIVAVVTMSMGMMMLPPTAISLPVKVLFFILIDGWNLLVGS 237

Query: 241 LVKSF 245
           L++S+
Sbjct: 238 LIRSY 242


>gi|156933432|ref|YP_001437348.1| flagellar biosynthesis protein FliP [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156531686|gb|ABU76512.1| hypothetical protein ESA_01250 [Cronobacter sakazakii ATCC BAA-894]
          Length = 245

 Score =  218 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 102/247 (41%), Positives = 156/247 (63%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           M R+   +   +      A + L  +++ P      +W   V+T    T L+  P +L+M
Sbjct: 1   MRRWLNLSFLALGLLAAPAMAQLPGLVSQPISGGGQSWSLPVQTLVFITSLTFLPAILLM 60

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP   N+
Sbjct: 61  MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYSDAYQPFNENK 120

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   A+ R A+P   FM   TRE DL+LF  +A++      I   + +  RIL+P+++ 
Sbjct: 121 ISMEVALDRGAQPLREFMLRQTREADLALFAKLANT----QPIQGPEAVPMRILLPAYVT 176

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP SI+LPFK++ FVL+DGW LLV
Sbjct: 177 SELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASIALPFKLMLFVLVDGWQLLV 236

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 237 GSLAQSF 243


>gi|83309709|ref|YP_419973.1| flagellar biosynthesis protein FliP [Magnetospirillum magneticum
           AMB-1]
 gi|82944550|dbj|BAE49414.1| Flagellar biosynthesis pathway [Magnetospirillum magneticum AMB-1]
          Length = 250

 Score =  218 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 109/245 (44%), Positives = 161/245 (65%), Gaps = 5/245 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           MI      +            SL+  +  P   S ++ I++   + T+LS+AP +L+MVT
Sbjct: 10  MILAAAVGILTALAAGPVLAQSLNIDLGGPQ-ASATSRIIQLIALTTVLSVAPSILVMVT 68

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F RF++V   LR  +G    PPN V++SLA+F+T +VM+PT +++   GI P+M+  + 
Sbjct: 69  SFTRFVVVLGFLRQALGTQQSPPNTVMVSLAMFLTAFVMAPTFEKAWTDGIAPVMDGHLD 128

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
           E    +R  +PF  FM  + R +DL LFMD++    R  ++ K +    R LIP+FMISE
Sbjct: 129 EIEGFERAVKPFHAFMSKHVRGQDLKLFMDLS----RAKEVEKAEDAPLRALIPAFMISE 184

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           LRR+FEIGFLI LPFLIIDM++A+++M+MGMMM+PP  ISLPFK+IFFV++DGW L+V +
Sbjct: 185 LRRAFEIGFLIFLPFLIIDMVIASVLMSMGMMMIPPAMISLPFKLIFFVMVDGWYLVVGS 244

Query: 241 LVKSF 245
           LV+S+
Sbjct: 245 LVQSY 249


>gi|209964214|ref|YP_002297129.1| flagellar biosynthesis protein FliP [Rhodospirillum centenum SW]
 gi|209957680|gb|ACI98316.1| flagellar biosynthesis protein FliP [Rhodospirillum centenum SW]
          Length = 255

 Score =  218 bits (555), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 110/215 (51%), Positives = 157/215 (73%), Gaps = 4/215 (1%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
              + +  I++   + T+LS+AP +LIM+TCF R +IV S LR+ MG   VPPN V++SL
Sbjct: 42  QSGTATGRIIQLVALLTVLSLAPSILIMMTCFVRIVIVLSFLRSAMGTQQVPPNQVLVSL 101

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           ALF+TF++M+P +  S   GI+PL+N  I E TA  R  EPF  FM  + RE+DL LF+D
Sbjct: 102 ALFLTFFIMAPVMQESYANGIRPLINEDIDELTAFNRAVEPFHGFMMKHVRERDLQLFLD 161

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           +A    +   +     +  +++IP+FM+SEL+R+FEIGFL+ +PFL+IDM+VA+++M+MG
Sbjct: 162 IA----KTGPVADPKDVPLQVVIPAFMLSELKRAFEIGFLVFVPFLVIDMVVASVLMSMG 217

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMMLPPT I+LPFKVIFFVL+DGW L+V +LV+SF
Sbjct: 218 MMMLPPTLIALPFKVIFFVLVDGWYLIVGSLVQSF 252


>gi|300717241|ref|YP_003742044.1| flagellar biosynthesis protein [Erwinia billingiae Eb661]
 gi|299063077|emb|CAX60197.1| Flagellar biosynthesis protein [Erwinia billingiae Eb661]
          Length = 244

 Score =  217 bits (554), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 97/227 (42%), Positives = 149/227 (65%), Gaps = 6/227 (2%)

Query: 21  SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           + L  +M+ P      +W   V+T    T L+  P +L+M+T F R IIVF +LR  +G 
Sbjct: 20  AQLPGLMSHPTANGGQSWSLPVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGT 79

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
            S PPN V++ LALF+TF++M P  D+  +    P   ++I+   AI + A+P   FM  
Sbjct: 80  PSAPPNQVLLGLALFLTFFIMGPVFDKIYQDAYLPFSQDKISMQDAIDKGAQPLREFMLR 139

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
            TRE DL+LF  +++S      +   + +  RIL+P+++ SEL+ +F+IGF + +PFLII
Sbjct: 140 QTREADLALFARLSNSP----PLQGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLII 195

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           D++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGWSLLV +L +SF
Sbjct: 196 DLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWSLLVSSLAQSF 242


>gi|323961992|gb|EGB57591.1| flagellar biosynthetic protein FliP [Escherichia coli H489]
          Length = 245

 Score =  217 bits (554), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 101/245 (41%), Positives = 157/245 (64%), Gaps = 5/245 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           ++      L+LVTP L FA+    +   +P      +  V+T    T L+  P +L+M+T
Sbjct: 4   LLSVAPVLLWLVTP-LAFAQLPGINSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMT 62

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +I+
Sbjct: 63  SFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKIS 122

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A+++ A+P   FM   TRE DL LF  +A++      +   + +  RIL+P+++ SE
Sbjct: 123 MQEALEKGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSE 178

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +
Sbjct: 179 LKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGS 238

Query: 241 LVKSF 245
           L +SF
Sbjct: 239 LAQSF 243


>gi|83589638|ref|YP_429647.1| flagellar biosynthesis protein FliP [Moorella thermoacetica ATCC
           39073]
 gi|83572552|gb|ABC19104.1| flagellar biosynthetic protein FliP [Moorella thermoacetica ATCC
           39073]
          Length = 317

 Score =  217 bits (554), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 84/187 (44%), Positives = 128/187 (68%), Gaps = 4/187 (2%)

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R I+V S +R+ +     PPN ++I LALF+TF++M+P  ++     I P +  +
Sbjct: 135 MTSFTRIIVVLSFVRSALATQQTPPNQILIGLALFLTFFIMAPVYNQVKTQAIDPYLAGR 194

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           IT+  A+   A P   FM   TREKDL+LF+ M+  +   T     D +   +LIP+F+I
Sbjct: 195 ITQEQALAAGARPVREFMYRQTREKDLALFVHMSGMAQPRT----RDDVPLHVLIPAFII 250

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F++GFLI +PFLIID+++A+ +MAMGM M+PP  ISLPFK++ FVL+DGW L+V
Sbjct: 251 SELKTAFQMGFLIYIPFLIIDLVIASTLMAMGMFMVPPVMISLPFKLMLFVLVDGWYLVV 310

Query: 239 ENLVKSF 245
           ++L++SF
Sbjct: 311 KSLLESF 317


>gi|157145258|ref|YP_001452577.1| flagellar biosynthesis protein FliP [Citrobacter koseri ATCC
           BAA-895]
 gi|78100273|gb|ABB20928.1| flagellar biosynthesis/transport protein [Citrobacter koseri]
 gi|157082463|gb|ABV12141.1| hypothetical protein CKO_00995 [Citrobacter koseri ATCC BAA-895]
          Length = 245

 Score =  217 bits (554), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 99/245 (40%), Positives = 155/245 (63%), Gaps = 5/245 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           ++     AL+ ++P   FA+        +P      +  V+T    T L+  P +L+M+T
Sbjct: 4   LLSLTLMALWFISPA-AFAQLPGLVSQPLPGGGQSWSLPVQTLVFITSLTFLPAILLMMT 62

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +I+
Sbjct: 63  SFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAWQPFSEEKIS 122

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A+++ A+P   FM   TRE DL LF  +A+S      +   + +  RIL+P+++ SE
Sbjct: 123 MQEALEKGAQPLREFMLRQTREADLGLFARLANSG----PLQGPEAVPMRILLPAYVTSE 178

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +
Sbjct: 179 LKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGS 238

Query: 241 LVKSF 245
           L +SF
Sbjct: 239 LAQSF 243


>gi|182418437|ref|ZP_02949731.1| flagellar biosynthetic protein FliP [Clostridium butyricum 5521]
 gi|237666336|ref|ZP_04526321.1| flagellar biosynthetic protein FliP [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182377819|gb|EDT75363.1| flagellar biosynthetic protein FliP [Clostridium butyricum 5521]
 gi|237657535|gb|EEP55090.1| flagellar biosynthetic protein FliP [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 259

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 100/225 (44%), Positives = 151/225 (67%), Gaps = 5/225 (2%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           S  D  + P D   +   +R    FT+L++ P ++IMVT F R ++VFS L+T +G+   
Sbjct: 40  SFGDGSDSPKDYVTN---IRILIFFTVLALLPSIVIMVTSFTRIVVVFSFLKTAIGVTQS 96

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
            PN ++  LA+F+TF++M P   +    GIQP + N+IT+  AI  +++P   FM   TR
Sbjct: 97  VPNQILTGLAIFLTFFIMQPVYSQMNTNGIQPYLENKITQEQAIDEISKPLKEFMAKETR 156

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           + DL LF+++ +       I +   I +  L+P+F ISELR +FEIGFLI LPFL+IDM+
Sbjct: 157 QDDLELFIEINNVD--KQSIAEAKDIPFTSLVPAFAISELRTAFEIGFLIFLPFLVIDMV 214

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           VA+++M+MGM MLPPT+++LPFK+I FV+++GW LLVE L+KSF+
Sbjct: 215 VASVLMSMGMFMLPPTTVALPFKLILFVMVNGWHLLVEQLIKSFM 259


>gi|302037618|ref|YP_003797940.1| flagellar biosynthetic protein FliP [Candidatus Nitrospira
           defluvii]
 gi|300605682|emb|CBK42015.1| Flagellar biosynthetic protein FliP, export component [Candidatus
           Nitrospira defluvii]
          Length = 266

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 104/245 (42%), Positives = 153/245 (62%), Gaps = 5/245 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           ++    FA   V     +A      +         +  +++   +FT+LS+AP L IMVT
Sbjct: 26  LMSVAIFACLFVA-TSAYADGPSLTIDLGQGGSKQTAVVLQILALFTVLSLAPALFIMVT 84

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R +IV S LR  MG   VPPN V+ISLALF+T +VM+P      +  +QPL+  QI 
Sbjct: 85  SFTRMVIVLSFLRQAMGTQQVPPNQVLISLALFLTMFVMAPVGQAVYKDALQPLLAEQIG 144

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A  R  +P   FM    R+KDL LFM+++H+       T+ + +   ++IP+F++SE
Sbjct: 145 YEDAWNRGIQPIRAFMLKQMRDKDLELFMELSHAPK----ATQVEQVPIHVIIPAFVLSE 200

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           LR +F+IGFL+ +PFLI+DM+VA+++M+MGMM+LPP  ISLPFK+I FVL DGW L+V +
Sbjct: 201 LRIAFQIGFLLYIPFLIVDMVVASVLMSMGMMLLPPVMISLPFKLILFVLADGWYLVVGS 260

Query: 241 LVKSF 245
           +V+SF
Sbjct: 261 MVRSF 265


>gi|238916764|ref|YP_002930281.1| triacylglycerol lipase [Eubacterium eligens ATCC 27750]
 gi|238872124|gb|ACR71834.1| triacylglycerol lipase [Eubacterium eligens ATCC 27750]
          Length = 267

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 98/236 (41%), Positives = 149/236 (63%), Gaps = 2/236 (0%)

Query: 10  FLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVF 69
            +       + +SL ++     D +    +++   + T++S+AP +LIM+T F R +IV 
Sbjct: 33  VMAADTDTASGNSLINIGISAGDGNDMASVLQMLLVLTVISLAPSILIMLTSFTRIVIVL 92

Query: 70  SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129
              R  +G  +VPPN VII L+LF+TF+VMSPT     +  ++PL NN+I+   A +   
Sbjct: 93  HFTRAAIGTQTVPPNQVIIGLSLFLTFFVMSPTFTEIYDSALKPLSNNEISVEEAYETGV 152

Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189
           +P   FM   T  KDL  F  +A   +    +T  D I   +L+PSF+ISELR +F IGF
Sbjct: 153 KPLKTFMLKQTSTKDLDTFFKIA--GYEEGSVTSEDDISMTVLVPSFIISELRIAFIIGF 210

Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LI +PF+IIDM+V++ +M+MGMMMLPPT+IS PFK++ FV+ DGW+L++ NL+ +F
Sbjct: 211 LIYIPFIIIDMVVSSTLMSMGMMMLPPTTISAPFKILLFVMADGWNLIIGNLITTF 266


>gi|302670736|ref|YP_003830696.1| flagellar biosynthetic protein FliP [Butyrivibrio proteoclasticus
           B316]
 gi|302395209|gb|ADL34114.1| flagellar biosynthetic protein FliP [Butyrivibrio proteoclasticus
           B316]
          Length = 314

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 94/215 (43%), Positives = 137/215 (63%), Gaps = 4/215 (1%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
                    +R     T++S+AP LL+M+T F R I+     RT +G  + PPNLV++ +
Sbjct: 103 NGNGSLNGALRILITLTLISLAPTLLVMMTSFTRIIVALHFTRTAIGTQTSPPNLVMLGI 162

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           ALFMT ++M PTL       + P  N ++ +    +   +PF  FM   T++KD+ LFM+
Sbjct: 163 ALFMTLFIMQPTLTTVYNEAVIPFENGEMDQQEFFEEAMDPFRQFMYGQTQKKDVILFMN 222

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           +             D I   +LIPSF++SELR +F IGF+I +PF++IDM+VA+++M+MG
Sbjct: 223 IDGIEWDGE----LDSIPNVVLIPSFIVSELRTAFIIGFMIYIPFIVIDMVVASVLMSMG 278

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMMLPPT+ISLPFK++ FVL DGWSL++ NLVKSF
Sbjct: 279 MMMLPPTTISLPFKILLFVLADGWSLIIGNLVKSF 313


>gi|188589499|ref|YP_001920217.1| flagellar biosynthetic protein FliP [Clostridium botulinum E3 str.
           Alaska E43]
 gi|251778351|ref|ZP_04821271.1| flagellar biosynthetic protein FliP [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|188499780|gb|ACD52916.1| flagellar biosynthetic protein FliP [Clostridium botulinum E3 str.
           Alaska E43]
 gi|243082666|gb|EES48556.1| flagellar biosynthetic protein FliP [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 259

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 91/206 (44%), Positives = 140/206 (67%), Gaps = 3/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++    FTIL++ P ++IM+T F R +IVFS +++ MG+    PN ++  LALF+T ++M
Sbjct: 56  IKILIFFTILAVLPSIVIMLTSFTRIVIVFSFIKSAMGVQQAIPNQILTGLALFLTIFIM 115

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP  +       QP +   IT+  AI+  ++P   FM   TREKDL LF+++ +      
Sbjct: 116 SPVYNEVNTKAFQPYIEQSITQEEAIEIGSKPIKDFMLKQTREKDLELFVEINNVDKEE- 174

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                ++I +  LIP+F ISEL+ +F+IGFLI LPF++IDM+VA+++M+MGMMMLPP  +
Sbjct: 175 --LTRENIPFTTLIPAFAISELKTAFQIGFLIYLPFIVIDMVVASVLMSMGMMMLPPAMV 232

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FV++DGW LLV++L+ SF
Sbjct: 233 SLPFKLLLFVMVDGWYLLVKSLIMSF 258


>gi|157161419|ref|YP_001458737.1| flagellar biosynthesis protein FliP [Escherichia coli HS]
 gi|157067099|gb|ABV06354.1| flagellar biosynthetic protein FliP [Escherichia coli HS]
          Length = 245

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 101/247 (40%), Positives = 155/247 (62%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           M R    A  L+      A + L  + + P      +W   V+T    T L+  P +L+M
Sbjct: 1   MRRLLSVAPVLLWLVTPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +
Sbjct: 61  MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   A+++ A+P   FM   TRE DL LF  +A++      +   + +  RIL+P+++I
Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVI 176

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV
Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 237 GSLAQSF 243


>gi|299131778|ref|ZP_07024973.1| flagellar biosynthetic protein FliP [Afipia sp. 1NLS2]
 gi|298591915|gb|EFI52115.1| flagellar biosynthetic protein FliP [Afipia sp. 1NLS2]
          Length = 252

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 109/245 (44%), Positives = 162/245 (66%), Gaps = 6/245 (2%)

Query: 3   RYCFFALFLVTP--ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           R  F ++ +        FA+    +         ++   ++   + T+LS+AP +L+M+T
Sbjct: 9   RVLFLSVLIAATLATPAFAQDISINFGQGADGGGVTARAIQLIALLTVLSVAPSILVMMT 68

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R ++V S+LRT MG  + PPN V+I+LALF+T +VM P L +S + G++P++ NQ+T
Sbjct: 69  SFTRIVVVLSLLRTAMGTATAPPNSVMIALALFLTGFVMGPVLQKSYDDGVKPVIANQLT 128

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
               +     P   FM+ N REKDL LFMD++      T     D +  RILIP+FMISE
Sbjct: 129 VEQGLPLAIAPLRGFMQKNVREKDLKLFMDLSREPPPAT----PDEMSLRILIPAFMISE 184

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+R+FEIGFL+ LPFLIID++V++++M+MGMMMLPP  +SLPFK+IFFVL+DGWSL+  +
Sbjct: 185 LKRAFEIGFLLFLPFLIIDLVVSSVLMSMGMMMLPPVVVSLPFKLIFFVLVDGWSLVAGS 244

Query: 241 LVKSF 245
           LV+S+
Sbjct: 245 LVQSY 249


>gi|319403967|emb|CBI77555.1| Flagellar biosynthetic protein fliP [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 250

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 133/246 (54%), Positives = 186/246 (75%), Gaps = 9/246 (3%)

Query: 6   FFALFLVTPELVFAKSSLHDVMNIPAD------LSISTWIVRTFGIFTILSIAPILLIMV 59
              +FL+   + FA+ +  +  +  A        SIS  IV+ FG+ TILS+AP LLIMV
Sbjct: 8   VLMIFLLATTVAFAQKTGAENASGIAGLFSYPEGSISGRIVQLFGLLTILSVAPGLLIMV 67

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F RF I FS+LRTG+G+ + P NLV+ISLALFM+FYVM+PT + + E G+QPL+NN+I
Sbjct: 68  TSFTRFAIAFSLLRTGLGLQTTPSNLVMISLALFMSFYVMAPTFNTAWEEGVQPLVNNKI 127

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           +E  AI+++++PF  FM +  REKDL LF++++ SS +   +     I++R+L+P+FMIS
Sbjct: 128 SEQQAIEKISQPFREFMISQVREKDLDLFVNLSDSSLQ---VKTGSDIDFRVLVPAFMIS 184

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           ELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVL+DGW+LLV 
Sbjct: 185 ELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLVDGWNLLVG 244

Query: 240 NLVKSF 245
           +L++SF
Sbjct: 245 SLIRSF 250


>gi|259908768|ref|YP_002649124.1| flagellar biosynthesis protein FliP [Erwinia pyrifoliae Ep1/96]
 gi|224964390|emb|CAX55899.1| Flagellar biosynthesis protein [Erwinia pyrifoliae Ep1/96]
 gi|283478744|emb|CAY74660.1| Flagellar biosynthetic protein FliP precursor [Erwinia pyrifoliae
           DSM 12163]
 gi|310767334|gb|ADP12284.1| flagellar biosynthesis protein FliP [Erwinia sp. Ejp617]
          Length = 245

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 98/247 (39%), Positives = 152/247 (61%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           M R     L  +        + L  +++ P      +W   V+T    T L+  P +L+M
Sbjct: 1   MKRLIPLLLPALLMLAPNVYAQLPGLVSQPTANGGQSWSLPVQTLVFITSLTFLPAILLM 60

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIVF +LR  +G  S PPN V++ L+LF+TF++M P  D+      QP   ++
Sbjct: 61  MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLSLFLTFFIMGPVFDKMYTDAYQPFSEDK 120

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   AI + A+P   FM   TRE DL+LF  +A++      I   + +  RIL+P+++ 
Sbjct: 121 ISMQEAIDKGAQPLREFMLRQTREADLALFARLANTP----PIAGPEAVPMRILLPAYVT 176

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV
Sbjct: 177 SELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 237 SSLAQSF 243


>gi|188534130|ref|YP_001907927.1| flagellar biosynthesis protein FliP [Erwinia tasmaniensis Et1/99]
 gi|188029172|emb|CAO97044.1| Flagellar biosynthesis protein [Erwinia tasmaniensis Et1/99]
          Length = 245

 Score =  217 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 98/247 (39%), Positives = 152/247 (61%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           M R     L  +        + L  +++ P      +W   V+T    T L+  P +L+M
Sbjct: 1   MKRLFPLLLPGLLMLAPNVYAQLPGLISQPMANGGQSWSLPVQTLVFITSLTFLPAILLM 60

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIVF +LR  +G  S PPN V++ L+LF+TF++M P  D+      QP   ++
Sbjct: 61  MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLSLFLTFFIMGPVFDKIYTDAYQPFSEDK 120

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   AI + A+P   FM   TRE DL+LF  +A++      I   + +  RIL+P+++ 
Sbjct: 121 ISMQEAIDKGAQPLREFMLRQTREADLALFARLANT----APIAGPEAVPMRILLPAYVT 176

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV
Sbjct: 177 SELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 237 GSLAQSF 243


>gi|218549273|ref|YP_002383064.1| flagellar biosynthesis protein FliP [Escherichia fergusonii ATCC
           35469]
 gi|218356814|emb|CAQ89442.1| flagellar biosynthesis protein [Escherichia fergusonii ATCC 35469]
          Length = 245

 Score =  217 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 99/247 (40%), Positives = 154/247 (62%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           M R       ++      A + L  ++  P      +W   V+T    T L+  P +L+M
Sbjct: 1   MRRLLTLIPAILWLVTPCALAQLPGLVTQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +
Sbjct: 61  MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   A+++ A+P   FM   TRE DL+LF  +A++      I   + +  RIL+P+++ 
Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLALFARLANTG----PIQGPEAVPMRILLPAYVT 176

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV
Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 237 GSLAQSF 243


>gi|260438790|ref|ZP_05792606.1| flagellar biosynthetic protein FliP [Butyrivibrio crossotus DSM
           2876]
 gi|292808779|gb|EFF67984.1| flagellar biosynthetic protein FliP [Butyrivibrio crossotus DSM
           2876]
          Length = 272

 Score =  217 bits (552), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 94/215 (43%), Positives = 145/215 (67%), Gaps = 2/215 (0%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
            + S    +++   + T++++AP +LIM+T F R IIV    R+ +G  + PPN V++ L
Sbjct: 59  GNGSDLASVLQILLVLTVIALAPSILIMLTSFTRIIIVLHFTRSAIGTQTAPPNQVLVGL 118

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           ALF+TF++M+PT     +  I+PL  N+IT   A     +P   FM   T  KD+ +F+D
Sbjct: 119 ALFLTFFIMAPTFKTVYDDAIKPLSKNEITSEEAYDVGIKPIRQFMLEQTNTKDIRMFID 178

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           +A      + +   D I  ++LIPSF++SELR +F IGFLI +PF+IIDM+V++ +M+MG
Sbjct: 179 IAKVD--TSTLKDYDDIPIQVLIPSFIVSELRIAFIIGFLIYIPFIIIDMVVSSALMSMG 236

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMMLPPT+ISLPFK++ F++ DGW+L++ NLVK+F
Sbjct: 237 MMMLPPTTISLPFKILLFIMADGWNLVIGNLVKTF 271


>gi|171057713|ref|YP_001790062.1| flagellar biosynthesis protein FliP [Leptothrix cholodnii SP-6]
 gi|170775158|gb|ACB33297.1| flagellar biosynthetic protein FliP [Leptothrix cholodnii SP-6]
          Length = 262

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 97/245 (39%), Positives = 148/245 (60%), Gaps = 4/245 (1%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           M+     + +        A ++L  ++      +  +  ++T   FT LS  P +L+M+T
Sbjct: 20  MLGLTVISAWPAVALAQGAPAALPLMVGQGGSGTTFSVPIQTLLFFTALSFLPAVLLMMT 79

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R +IV  +LR  +G  + PPN VI+ L+LF+TF+VM+PTLDR      +P   NQI 
Sbjct: 80  GFTRIVIVLGLLRQALGTQAAPPNQVIVGLSLFLTFFVMAPTLDRVYADAYKPYAANQIG 139

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              AI R   P   FM   TR+ DL+LF  +A          K++    R+L+P+F+ SE
Sbjct: 140 FEEAIARGEVPMRQFMLKQTRQSDLALFARLAKL----DPAVKSEQAPLRVLVPAFVTSE 195

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +F+IGFLI +PFL+IDM+VA+++M++GMMML P  ++LPFK++ FVL DGW+LL+ +
Sbjct: 196 LKSAFQIGFLIFIPFLVIDMVVASVLMSLGMMMLSPVLVALPFKLMLFVLADGWNLLLGS 255

Query: 241 LVKSF 245
           L  SF
Sbjct: 256 LAASF 260


>gi|218689943|ref|YP_002398155.1| flagellar biosynthesis protein FliP [Escherichia coli ED1a]
 gi|300818632|ref|ZP_07098840.1| flagellar biosynthetic protein FliP [Escherichia coli MS 107-1]
 gi|218427507|emb|CAR08402.2| flagellar biosynthesis protein [Escherichia coli ED1a]
 gi|300528804|gb|EFK49866.1| flagellar biosynthetic protein FliP [Escherichia coli MS 107-1]
          Length = 245

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 100/247 (40%), Positives = 154/247 (62%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           M R    A  L+      A + L  + + P      +W   V+T    T L+  P +L+M
Sbjct: 1   MRRLLSIAPVLLWLVTPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +
Sbjct: 61  MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   A+++ A+P   FM   TRE DL LF  +A++      +   + +  RIL+P+++ 
Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVT 176

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV
Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 237 GSLAQSF 243


>gi|170019719|ref|YP_001724673.1| flagellar biosynthesis protein FliP [Escherichia coli ATCC 8739]
 gi|187730211|ref|YP_001879727.1| flagellar biosynthesis protein FliP [Shigella boydii CDC 3083-94]
 gi|209919370|ref|YP_002293454.1| flagellar biosynthesis protein FliP [Escherichia coli SE11]
 gi|218705441|ref|YP_002412960.1| flagellar biosynthesis protein FliP [Escherichia coli UMN026]
 gi|260855923|ref|YP_003229814.1| flagellar biosynthesis protein FliP [Escherichia coli O26:H11 str.
           11368]
 gi|260868541|ref|YP_003234943.1| flagellar biosynthesis protein FliP [Escherichia coli O111:H- str.
           11128]
 gi|293405431|ref|ZP_06649423.1| flagellar biosynthetic protein fliP [Escherichia coli FVEC1412]
 gi|298381075|ref|ZP_06990674.1| flagellar biosynthetic protein fliP [Escherichia coli FVEC1302]
 gi|300822282|ref|ZP_07102423.1| flagellar biosynthetic protein FliP [Escherichia coli MS 119-7]
 gi|300899205|ref|ZP_07117481.1| flagellar biosynthetic protein FliP [Escherichia coli MS 198-1]
 gi|300904838|ref|ZP_07122664.1| flagellar biosynthetic protein FliP [Escherichia coli MS 84-1]
 gi|300931161|ref|ZP_07146508.1| flagellar biosynthetic protein FliP [Escherichia coli MS 187-1]
 gi|300951573|ref|ZP_07165406.1| flagellar biosynthetic protein FliP [Escherichia coli MS 116-1]
 gi|300956536|ref|ZP_07168818.1| flagellar biosynthetic protein FliP [Escherichia coli MS 175-1]
 gi|301018202|ref|ZP_07182717.1| flagellar biosynthetic protein FliP [Escherichia coli MS 69-1]
 gi|301304257|ref|ZP_07210372.1| flagellar biosynthetic protein FliP [Escherichia coli MS 124-1]
 gi|301327735|ref|ZP_07220940.1| flagellar biosynthetic protein FliP [Escherichia coli MS 78-1]
 gi|301644593|ref|ZP_07244582.1| flagellar biosynthetic protein FliP [Escherichia coli MS 146-1]
 gi|307312466|ref|ZP_07592100.1| flagellar biosynthetic protein FliP [Escherichia coli W]
 gi|312967145|ref|ZP_07781363.1| flagellar biosynthetic protein FliP [Escherichia coli 2362-75]
 gi|331668639|ref|ZP_08369487.1| flagellar biosynthetic protein FliP [Escherichia coli TA271]
 gi|331673461|ref|ZP_08374229.1| flagellar biosynthetic protein FliP [Escherichia coli TA280]
 gi|169754647|gb|ACA77346.1| flagellar biosynthetic protein FliP [Escherichia coli ATCC 8739]
 gi|187427203|gb|ACD06477.1| flagellar biosynthetic protein FliP [Shigella boydii CDC 3083-94]
 gi|209912629|dbj|BAG77703.1| flagellar biosynthetic protein FliP [Escherichia coli SE11]
 gi|218432538|emb|CAR13431.1| flagellar biosynthesis protein [Escherichia coli UMN026]
 gi|257754572|dbj|BAI26074.1| flagellar biosynthesis protein FliP [Escherichia coli O26:H11 str.
           11368]
 gi|257764897|dbj|BAI36392.1| flagellar biosynthesis protein FliP [Escherichia coli O111:H- str.
           11128]
 gi|291427639|gb|EFF00666.1| flagellar biosynthetic protein fliP [Escherichia coli FVEC1412]
 gi|298278517|gb|EFI20031.1| flagellar biosynthetic protein fliP [Escherichia coli FVEC1302]
 gi|300316636|gb|EFJ66420.1| flagellar biosynthetic protein FliP [Escherichia coli MS 175-1]
 gi|300357186|gb|EFJ73056.1| flagellar biosynthetic protein FliP [Escherichia coli MS 198-1]
 gi|300399789|gb|EFJ83327.1| flagellar biosynthetic protein FliP [Escherichia coli MS 69-1]
 gi|300403265|gb|EFJ86803.1| flagellar biosynthetic protein FliP [Escherichia coli MS 84-1]
 gi|300449200|gb|EFK12820.1| flagellar biosynthetic protein FliP [Escherichia coli MS 116-1]
 gi|300461018|gb|EFK24511.1| flagellar biosynthetic protein FliP [Escherichia coli MS 187-1]
 gi|300525165|gb|EFK46234.1| flagellar biosynthetic protein FliP [Escherichia coli MS 119-7]
 gi|300840514|gb|EFK68274.1| flagellar biosynthetic protein FliP [Escherichia coli MS 124-1]
 gi|300845735|gb|EFK73495.1| flagellar biosynthetic protein FliP [Escherichia coli MS 78-1]
 gi|301077068|gb|EFK91874.1| flagellar biosynthetic protein FliP [Escherichia coli MS 146-1]
 gi|306907637|gb|EFN38140.1| flagellar biosynthetic protein FliP [Escherichia coli W]
 gi|309702237|emb|CBJ01554.1| flagellar biosynthetic protein FliP [Escherichia coli ETEC H10407]
 gi|312288609|gb|EFR16511.1| flagellar biosynthetic protein FliP [Escherichia coli 2362-75]
 gi|315061248|gb|ADT75575.1| flagellar biosynthesis protein [Escherichia coli W]
 gi|315257220|gb|EFU37188.1| flagellar biosynthetic protein FliP [Escherichia coli MS 85-1]
 gi|323152721|gb|EFZ38993.1| flagellar biosynthetic protein FliP [Escherichia coli EPECa14]
 gi|323180799|gb|EFZ66339.1| flagellar biosynthetic protein FliP [Escherichia coli 1180]
 gi|323378175|gb|ADX50443.1| flagellar biosynthetic protein FliP [Escherichia coli KO11]
 gi|323937218|gb|EGB33498.1| flagellar biosynthetic protein FliP [Escherichia coli E1520]
 gi|323940393|gb|EGB36584.1| flagellar biosynthetic protein FliP [Escherichia coli E482]
 gi|323968364|gb|EGB63771.1| flagellar biosynthetic protein FliP [Escherichia coli M863]
 gi|323977871|gb|EGB72957.1| flagellar biosynthetic protein FliP [Escherichia coli TW10509]
 gi|324118997|gb|EGC12886.1| flagellar biosynthetic protein FliP [Escherichia coli E1167]
 gi|327253080|gb|EGE64734.1| flagellar biosynthetic protein FliP [Escherichia coli STEC_7v]
 gi|331063833|gb|EGI35744.1| flagellar biosynthetic protein FliP [Escherichia coli TA271]
 gi|331069659|gb|EGI41046.1| flagellar biosynthetic protein FliP [Escherichia coli TA280]
 gi|332093095|gb|EGI98159.1| flagellar biosynthetic protein FliP [Shigella boydii 5216-82]
          Length = 245

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 100/247 (40%), Positives = 154/247 (62%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           M R    A  L+      A + L  + + P      +W   V+T    T L+  P +L+M
Sbjct: 1   MRRLLSVAPVLLWLVTPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +
Sbjct: 61  MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   A+++ A+P   FM   TRE DL LF  +A++      +   + +  RIL+P+++ 
Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVT 176

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV
Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 237 GSLAQSF 243


>gi|269139497|ref|YP_003296198.1| flagellar biosynthesis pathway, component FliP [Edwardsiella tarda
           EIB202]
 gi|267985158|gb|ACY84987.1| flagellar biosynthesis pathway, component FliP [Edwardsiella tarda
           EIB202]
 gi|304559386|gb|ADM42050.1| Flagellar biosynthesis protein FliP [Edwardsiella tarda FL6-60]
          Length = 246

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 96/224 (42%), Positives = 146/224 (65%), Gaps = 6/224 (2%)

Query: 24  HDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
             +++ P      +W   V+T    T LS  P  L+++T F R IIV  +LR  +G  S 
Sbjct: 25  PGIISQPLAHGGQSWSLPVQTLVFLTSLSFLPAALLLMTSFTRIIIVLGLLRNALGTPSA 84

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PPN V++ LALF+TF++MSP LD+  +   QP    +I+  TA+ R A+P   FM   TR
Sbjct: 85  PPNQVLLGLALFLTFFIMSPVLDKIYQDAYQPFSEQKISMETALDRGAKPLRAFMLRQTR 144

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           E DL+LF  +A       ++   + +  RIL+P+++ SEL+ +F+IGF + +PFLIID++
Sbjct: 145 ETDLALFSRLAKQP----EMQGPEDVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLV 200

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 201 VASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 244


>gi|168244830|ref|ZP_02669762.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194448965|ref|YP_002046030.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|238912448|ref|ZP_04656285.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|194407269|gb|ACF67488.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205336386|gb|EDZ23150.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
          Length = 245

 Score =  217 bits (552), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 101/247 (40%), Positives = 156/247 (63%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           M R  F +L  +      A + L  +++ P      +W   V+T    T L+  P +L+M
Sbjct: 1   MRRLLFLSLAGLWFFSPAAAAQLPGLISQPLAGGGQSWSLSVQTLVFITSLTFLPAILLM 60

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +
Sbjct: 61  MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK 120

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   A+ + A+P   FM   TRE DL+LF  +A+S      +   + +  RIL+P+++ 
Sbjct: 121 ISMQEALDKGAQPLRAFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVT 176

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV
Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 237 GSLAQSF 243


>gi|170741215|ref|YP_001769870.1| flagellar biosynthesis protein FliP [Methylobacterium sp. 4-46]
 gi|168195489|gb|ACA17436.1| flagellar biosynthetic protein FliP [Methylobacterium sp. 4-46]
          Length = 262

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 123/221 (55%), Positives = 166/221 (75%), Gaps = 2/221 (0%)

Query: 25  DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
           D +  P + + S  I++   + T+LS+AP LL+MVT F RF++  S LR+G+G+ S P N
Sbjct: 43  DALLPPGNGAASGRIIQMVALLTVLSVAPGLLVMVTSFTRFVVALSFLRSGLGLQSTPAN 102

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
           L ++SL+LFMTFYVM+PT DR+ + G++PL  N+I+E  A  +V +PF  FM+++ REKD
Sbjct: 103 LFMVSLSLFMTFYVMAPTFDRAWQEGVRPLTENRISEEDAFGKVVDPFREFMQSHVREKD 162

Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
           L  F D+A  +    +    + ++ RILIP+FMISELRR FEIGFLI LPFL+IDMIVAT
Sbjct: 163 LQTFADLASRNFPKAEAG--EKVDLRILIPAFMISELRRGFEIGFLIALPFLVIDMIVAT 220

Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +VM+MGMMMLPPT ISLPFKV+FFVLIDGW+LLV  LV+S+
Sbjct: 221 VVMSMGMMMLPPTVISLPFKVLFFVLIDGWNLLVSGLVRSY 261


>gi|170743261|ref|YP_001771916.1| flagellar biosynthetic protein FliP [Methylobacterium sp. 4-46]
 gi|168197535|gb|ACA19482.1| flagellar biosynthetic protein FliP [Methylobacterium sp. 4-46]
          Length = 283

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 101/229 (44%), Positives = 162/229 (70%), Gaps = 4/229 (1%)

Query: 17  VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
             A  +    +++     ++   ++   + T+L++AP +L+M T F R ++V SILR+ +
Sbjct: 57  ATAGLAQSVTVDLGPSGGVTERALQLVALITVLALAPSVLVMATAFTRIVVVLSILRSAL 116

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G  + PPN VI+SLALF+T +VM+PT   +   GI+PL+  QI+++ A +R ++PF  FM
Sbjct: 117 GTQTAPPNAVIVSLALFLTAFVMAPTAREAYRTGIEPLVAGQISQSQAFERASQPFKAFM 176

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
             + REKDL LF+D++++    T     + +   IL P+FMISELRR+FEIGFL+ +PFL
Sbjct: 177 LRSVREKDLRLFLDLSNAPRPAT----PEAVGLEILTPAFMISELRRAFEIGFLLFIPFL 232

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IID++VA+++M++GMMMLPP +++LPFK+IFFVL+DGW+L+  +LV+S+
Sbjct: 233 IIDLVVASVLMSVGMMMLPPATVALPFKLIFFVLVDGWTLVAGSLVQSY 281


>gi|114706620|ref|ZP_01439521.1| flagellar biosynthesis protein P [Fulvimarina pelagi HTCC2506]
 gi|114538012|gb|EAU41135.1| flagellar biosynthesis protein P [Fulvimarina pelagi HTCC2506]
          Length = 264

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 139/245 (56%), Positives = 175/245 (71%), Gaps = 7/245 (2%)

Query: 7   FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
           F L  V    +   SSL D++    D +IS  I++ FGI T+LSIAP LL+MVT F R +
Sbjct: 20  FGLGTVAQAQIADPSSLADLIPQ-GDGTISGRIIQLFGIVTVLSIAPGLLVMVTAFTRIV 78

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           I  SI+RTG+G+ + P NL+IISLALFMTF+VMSPT DR+   G+QPL+ N+I E  A  
Sbjct: 79  IALSIMRTGLGLQTTPANLIIISLALFMTFFVMSPTFDRAWNDGLQPLLENEIDEEEAFY 138

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND------HIEYRILIPSFMISE 180
           R+A+PF  FM    R  DL LF D+A  + R+    +         IE R+LIP+FMISE
Sbjct: 139 RIADPFKEFMLTQVRPSDLQLFGDIASVTDRDRVQPEEQGAADERDIELRVLIPAFMISE 198

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           LRR FEIGFLI+LPFL+IDMIVAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW+LLV +
Sbjct: 199 LRRGFEIGFLIVLPFLVIDMIVATLTMSMGMMMLPPTIISLPFKILFFVLIDGWNLLVGS 258

Query: 241 LVKSF 245
           LV+SF
Sbjct: 259 LVRSF 263


>gi|325497690|gb|EGC95549.1| flagellar biosynthesis protein FliP [Escherichia fergusonii ECD227]
          Length = 245

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 99/247 (40%), Positives = 154/247 (62%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           M R       ++      A + L  ++  P      +W   V+T    T L+  P +L+M
Sbjct: 1   MRRLLTLIPAMLWLVTPCALAQLPGLVTQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +
Sbjct: 61  MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   A+++ A+P   FM   TRE DL+LF  +A++      I   + +  RIL+P+++ 
Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLALFARLANTG----PIQGPEAVPMRILLPAYVT 176

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV
Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 237 GSLAQSF 243


>gi|283832657|ref|ZP_06352398.1| flagellar biosynthetic protein FliP [Citrobacter youngae ATCC
           29220]
 gi|291072331|gb|EFE10440.1| flagellar biosynthetic protein FliP [Citrobacter youngae ATCC
           29220]
          Length = 245

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 100/247 (40%), Positives = 158/247 (63%), Gaps = 9/247 (3%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           ++      L+L +P    A + L  +++ P      +W   V+T    T L+  P +L+M
Sbjct: 4   LLSITLAGLWLFSP---VALAQLPGLVSQPLPGGGQSWSLPVQTLVFITSLTFLPAILLM 60

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +
Sbjct: 61  MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   A+++ A+P   FM   TRE DL+LF  +A+S      +   + +  RIL+P+++ 
Sbjct: 121 ISMQEAMEKGAQPLREFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVT 176

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV
Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 237 GSLAQSF 243


>gi|13472582|ref|NP_104149.1| flagellar biosynthesis protein FliP [Mesorhizobium loti MAFF303099]
 gi|14023328|dbj|BAB49935.1| flagellar biosynthesis protein; FliP [Mesorhizobium loti
           MAFF303099]
          Length = 243

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 131/245 (53%), Positives = 180/245 (73%), Gaps = 3/245 (1%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           M ++   A  +     V A   L       AD +   +I++ FG+ T+LS+AP LLIMVT
Sbjct: 1   MKKFLLAAALIGAATSVAAAQQLDLGGIGKADGATVGYIIQMFGLLTVLSVAPGLLIMVT 60

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F RF+I FSILR G+G+ S P NL++ISL+LFMTFYVM+PT D++   G++PLM+NQI+
Sbjct: 61  SFTRFVIAFSILRAGIGLQSTPANLILISLSLFMTFYVMAPTFDQAWNTGVKPLMDNQIS 120

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
           +T A +++++PF  FM +N R+KD  LF D+A    +   +   + ++ RIL+P+FMISE
Sbjct: 121 QTEAFEKISDPFRTFMLHNVRDKDFDLFADLARERGQ---VVAKETVDLRILVPAFMISE 177

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           +RR FEIGFLI+LPFL+ID+IVATI MAMGMMMLPPT +SLPFK++FFVLIDGW+LLV +
Sbjct: 178 IRRGFEIGFLIVLPFLVIDLIVATITMAMGMMMLPPTVVSLPFKILFFVLIDGWNLLVGS 237

Query: 241 LVKSF 245
           LV+SF
Sbjct: 238 LVRSF 242


>gi|16125203|ref|NP_419767.1| flagellar biosynthesis protein FliP [Caulobacter crescentus CB15]
 gi|221233939|ref|YP_002516375.1| flagellar biosynthesis protein FliP [Caulobacter crescentus NA1000]
 gi|2494562|sp|Q45980|FLIP_CAUCR RecName: Full=Flagellar biosynthetic protein fliP
 gi|841253|gb|AAA86882.1| FliP [Caulobacter crescentus CB15]
 gi|13422227|gb|AAK22935.1| flagellar biosynthesis protein FliP [Caulobacter crescentus CB15]
 gi|220963111|gb|ACL94467.1| flagellar biosyntheis protein FliP [Caulobacter crescentus NA1000]
          Length = 266

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 104/245 (42%), Positives = 161/245 (65%), Gaps = 6/245 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           +I         + P    A+S+++  +N+     ++  +V+  G+ T+LS+AP ++IM T
Sbjct: 22  IISVLAAIACAIMPAAAMAQSAVN--INLGTGAGLTERVVQLVGLMTVLSLAPSIVIMTT 79

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R ++V  +LRT +G+   PPN V+ISLALF+T  VM+PT +RS + GI+PL++ Q+ 
Sbjct: 80  SFVRIVVVLGLLRTAIGVQQSPPNPVLISLALFLTAIVMAPTFERSYDAGIKPLLDQQME 139

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A +  + P   FM +     DL+LF+ ++      T          R++ P+FMISE
Sbjct: 140 LPEAFEAASGPVKQFMLSQVDRDDLALFVRLSKIPQPRTAA----ETPLRVVTPAFMISE 195

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+R+FEIGFL+ +PFL+ID++VA+++M+MGMMMLPP SISLPFK+IFFVL+DGW L+  +
Sbjct: 196 LKRAFEIGFLLFIPFLVIDLVVASVLMSMGMMMLPPASISLPFKLIFFVLVDGWRLVAGS 255

Query: 241 LVKSF 245
           LV+SF
Sbjct: 256 LVESF 260


>gi|16760923|ref|NP_456540.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29141385|ref|NP_804727.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62180554|ref|YP_216971.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161502899|ref|YP_001570011.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|167552788|ref|ZP_02346539.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|168234152|ref|ZP_02659210.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168239219|ref|ZP_02664277.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168462479|ref|ZP_02696410.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168823022|ref|ZP_02835022.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194444637|ref|YP_002041244.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194468817|ref|ZP_03074801.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194737682|ref|YP_002115013.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197247593|ref|YP_002146044.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197264056|ref|ZP_03164130.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|198244709|ref|YP_002215107.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200391063|ref|ZP_03217674.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204931035|ref|ZP_03221861.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|207856508|ref|YP_002243159.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213023112|ref|ZP_03337559.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
 gi|213163376|ref|ZP_03349086.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213417182|ref|ZP_03350326.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213424995|ref|ZP_03357745.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213584779|ref|ZP_03366605.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213650743|ref|ZP_03380796.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213855268|ref|ZP_03383508.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|224583522|ref|YP_002637320.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|25316655|pir||AD0753 flagellar biosynthetic protein FliP [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503220|emb|CAD05727.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29137012|gb|AAO68576.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62128187|gb|AAX65890.1| flagellar biosynthesis [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|160864246|gb|ABX20869.1| hypothetical protein SARI_00958 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|194403300|gb|ACF63522.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194455181|gb|EDX44020.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194713184|gb|ACF92405.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195634044|gb|EDX52396.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197211296|gb|ACH48693.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197242311|gb|EDY24931.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197288073|gb|EDY27460.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197939225|gb|ACH76558.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199603508|gb|EDZ02054.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204320079|gb|EDZ05284.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205322623|gb|EDZ10462.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205331887|gb|EDZ18651.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205340666|gb|EDZ27430.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|206708311|emb|CAR32614.1| flagellar biosynthetic protein flip precursor [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|224468049|gb|ACN45879.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|320085402|emb|CBY95183.1| Flagellar biosynthetic protein fliP Flagellar biosynthetic protein
           mopC [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|322715030|gb|EFZ06601.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|326622855|gb|EGE29200.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 245

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 101/247 (40%), Positives = 156/247 (63%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           M R  F +L  +      A + L  +++ P      +W   V+T    T L+  P +L+M
Sbjct: 1   MRRLLFLSLAGLWLFSPAAAAQLPGLISQPLAGGGQSWSLSVQTLVFITSLTFLPAILLM 60

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +
Sbjct: 61  MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK 120

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   A+ + A+P   FM   TRE DL+LF  +A+S      +   + +  RIL+P+++ 
Sbjct: 121 ISMQEALDKGAQPLRAFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVT 176

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV
Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 237 GSLAQSF 243


>gi|205352327|ref|YP_002226128.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205272108|emb|CAR36961.1| flagellar biosynthetic protein flip precursor [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|326627377|gb|EGE33720.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 245

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 100/247 (40%), Positives = 156/247 (63%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIM 58
           M R  F +L  +      A + L  +++ P      +W +  +T    T L+  P +L+M
Sbjct: 1   MRRLLFLSLAGLWLFSPAAAAQLPGLISQPLAGGGQSWSLSAQTLVFITSLTFLPAILLM 60

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +
Sbjct: 61  MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK 120

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   A+ + A+P   FM   TRE DL+LF  +A+S      +   + +  RIL+P+++ 
Sbjct: 121 ISMQEALDKGAQPLRAFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVT 176

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV
Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 237 GSLAQSF 243


>gi|294636880|ref|ZP_06715210.1| flagellar biosynthetic protein FliP [Edwardsiella tarda ATCC 23685]
 gi|291089910|gb|EFE22471.1| flagellar biosynthetic protein FliP [Edwardsiella tarda ATCC 23685]
          Length = 246

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 96/224 (42%), Positives = 147/224 (65%), Gaps = 6/224 (2%)

Query: 24  HDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
             +++ P      +W   V+T    T LS  P +L+++T F R IIV  +LR  +G  S 
Sbjct: 25  PGIISQPLAHGGQSWSLPVQTLVFLTSLSFLPAVLLLMTSFTRIIIVLGLLRNALGTPSA 84

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PPN V++ LALF+TF++MSP LD+  +   QP    +I+  TA++R A+P   FM   TR
Sbjct: 85  PPNQVLLGLALFLTFFIMSPVLDKIYQDAYQPFSEQKISMETALERGAKPLRAFMLRQTR 144

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           E DL+LF  +A        +   + +  RIL+P+++ SEL+ +F+IGF + +PFLIID++
Sbjct: 145 ETDLALFARLAKQPQ----MQGPEDVPLRILLPAYVTSELKTAFQIGFTVFIPFLIIDLV 200

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 201 VASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 244


>gi|238920321|ref|YP_002933836.1| flagellar biosynthetic protein FliP, [Edwardsiella ictaluri 93-146]
 gi|238869890|gb|ACR69601.1| flagellar biosynthetic protein FliP, putative [Edwardsiella
           ictaluri 93-146]
          Length = 246

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 96/224 (42%), Positives = 146/224 (65%), Gaps = 6/224 (2%)

Query: 24  HDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
             +++ P      +W   V+T    T LS  P  L+++T F R IIV  +LR  +G  S 
Sbjct: 25  PGIISQPLAHGGQSWSLPVQTLVFLTSLSFLPAALLLMTSFTRIIIVLGLLRNALGTPSA 84

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PPN V++ LALF+TF++MSP LD+  +   QP    +I+  TA+ R A+P   FM   TR
Sbjct: 85  PPNQVLLGLALFLTFFIMSPVLDKIYQEAYQPFSEQKISMETALDRGAKPLRAFMLRQTR 144

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           E DL+LF  +A       ++   + +  RIL+P+++ SEL+ +F+IGF + +PFLIID++
Sbjct: 145 ETDLALFSRLAKQP----EMQGPEDVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLV 200

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 201 VASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 244


>gi|215487148|ref|YP_002329579.1| flagellar biosynthesis protein FliP [Escherichia coli O127:H6 str.
           E2348/69]
 gi|215265220|emb|CAS09610.1| flagellar biosynthesis protein FliP [Escherichia coli O127:H6 str.
           E2348/69]
          Length = 245

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 99/247 (40%), Positives = 154/247 (62%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           M R    A  L+      A + L  + + P      +W   V+T    T L+  P +L+M
Sbjct: 1   MRRLLSVAPVLLWLVTPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +
Sbjct: 61  MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   A+++ A+P   FM   TRE DL +F  +A++      +   + +  RIL+P+++ 
Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLGVFARLANTG----PLQGPEAVPMRILLPAYVT 176

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV
Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 237 GSLAQSF 243


>gi|118443404|ref|YP_877989.1| flagellar biosynthesis protein FliP [Clostridium novyi NT]
 gi|118133860|gb|ABK60904.1| flagellar biosynthetic protein fliP [Clostridium novyi NT]
          Length = 257

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 93/248 (37%), Positives = 156/248 (62%), Gaps = 9/248 (3%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI------VRTFGIFTILSIAPILLI 57
              FAL ++     +A  +   +  I   +  ++        ++   + T++S+ P  L+
Sbjct: 11  LVMFALAILGATKAYAAPNTIPIPKINVSVDQASSPKDYVDNIKLLIMLTVISLLPSFLV 70

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           M+T F R I+V   +R  +G    PPN +++ LALF+T ++M+PT     +  I+P + N
Sbjct: 71  MMTSFTRIIVVLGFMRNALGTQQAPPNQILVGLALFLTIFIMTPTYKTINKEAIKPFLEN 130

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
           +IT+T A+   A+P   FM   TR+KDL LF+D++ +  +N      +++   ++IPSF+
Sbjct: 131 KITQTEALNNAAKPMREFMLKQTRDKDLELFLDVSKTDKKNI---TKENVPMYVVIPSFI 187

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
           ISEL+ +F+IGFL+ +PFLIID++VA+++M+MGM MLPP  ISLPFK++ FV++DGW LL
Sbjct: 188 ISELKTAFKIGFLLFVPFLIIDIVVASVLMSMGMFMLPPVMISLPFKLLLFVMVDGWYLL 247

Query: 238 VENLVKSF 245
           V++LV  +
Sbjct: 248 VKSLVMGY 255


>gi|15802383|ref|NP_288409.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H7
           EDL933]
 gi|15831941|ref|NP_310714.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str.
           Sakai]
 gi|16129895|ref|NP_416458.1| flagellar biosynthesis protein [Escherichia coli str. K-12 substr.
           MG1655]
 gi|89108780|ref|AP_002560.1| flagellar biosynthesis protein [Escherichia coli str. K-12 substr.
           W3110]
 gi|157156523|ref|YP_001463250.1| flagellar biosynthesis protein FliP [Escherichia coli E24377A]
 gi|168751877|ref|ZP_02776899.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC4113]
 gi|168758262|ref|ZP_02783269.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC4401]
 gi|168764426|ref|ZP_02789433.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC4501]
 gi|168771555|ref|ZP_02796562.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC4486]
 gi|168777375|ref|ZP_02802382.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783345|ref|ZP_02808352.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC4076]
 gi|168790292|ref|ZP_02815299.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC869]
 gi|168802295|ref|ZP_02827302.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC508]
 gi|170081592|ref|YP_001730912.1| flagellar biosynthesis protein [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170682430|ref|YP_001743297.1| flagellar biosynthesis protein FliP [Escherichia coli SMS-3-5]
 gi|191168304|ref|ZP_03030097.1| flagellar biosynthetic protein FliP [Escherichia coli B7A]
 gi|193066380|ref|ZP_03047428.1| flagellar biosynthetic protein FliP [Escherichia coli E22]
 gi|193071148|ref|ZP_03052072.1| flagellar biosynthetic protein FliP [Escherichia coli E110019]
 gi|194429937|ref|ZP_03062447.1| flagellar biosynthetic protein FliP [Escherichia coli B171]
 gi|194439571|ref|ZP_03071644.1| flagellar biosynthetic protein FliP [Escherichia coli 101-1]
 gi|195939254|ref|ZP_03084636.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str.
           EC4024]
 gi|208810650|ref|ZP_03252526.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC4206]
 gi|208816935|ref|ZP_03258055.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819585|ref|ZP_03259905.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400543|ref|YP_002271065.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC4115]
 gi|217328816|ref|ZP_03444897.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           TW14588]
 gi|218554528|ref|YP_002387441.1| flagellar biosynthesis protein FliP [Escherichia coli IAI1]
 gi|218695553|ref|YP_002403220.1| flagellar biosynthesis protein FliP [Escherichia coli 55989]
 gi|237705907|ref|ZP_04536388.1| flagellar biosynthetic protein fliP [Escherichia sp. 3_2_53FAA]
 gi|238901153|ref|YP_002926949.1| flagellar biosynthesis protein [Escherichia coli BW2952]
 gi|253773103|ref|YP_003035934.1| flagellar biosynthesis protein FliP [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254793598|ref|YP_003078435.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str.
           TW14359]
 gi|256017859|ref|ZP_05431724.1| flagellar biosynthesis protein FliP [Shigella sp. D9]
 gi|256022394|ref|ZP_05436259.1| flagellar biosynthesis protein FliP [Escherichia sp. 4_1_40B]
 gi|260844347|ref|YP_003222125.1| flagellar biosynthesis protein FliP [Escherichia coli O103:H2 str.
           12009]
 gi|261227557|ref|ZP_05941838.1| flagellar biosynthesis protein [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261254619|ref|ZP_05947152.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291283125|ref|YP_003499943.1| Flagellar biosynthetic protein fliP precursor [Escherichia coli
           O55:H7 str. CB9615]
 gi|293415258|ref|ZP_06657901.1| flagellar biosynthetic protein FliP [Escherichia coli B185]
 gi|293446328|ref|ZP_06662750.1| flagellar biosynthetic protein FliP [Escherichia coli B088]
 gi|300920167|ref|ZP_07136617.1| flagellar biosynthetic protein FliP [Escherichia coli MS 115-1]
 gi|300923889|ref|ZP_07139904.1| flagellar biosynthetic protein FliP [Escherichia coli MS 182-1]
 gi|301029405|ref|ZP_07192499.1| flagellar biosynthetic protein FliP [Escherichia coli MS 196-1]
 gi|307138615|ref|ZP_07497971.1| flagellar biosynthesis protein FliP [Escherichia coli H736]
 gi|309795945|ref|ZP_07690358.1| flagellar biosynthetic protein FliP [Escherichia coli MS 145-7]
 gi|312973835|ref|ZP_07788007.1| flagellar biosynthetic protein FliP [Escherichia coli 1827-70]
 gi|331642569|ref|ZP_08343704.1| flagellar biosynthetic protein FliP [Escherichia coli H736]
 gi|331677830|ref|ZP_08378505.1| flagellar biosynthetic protein FliP [Escherichia coli H591]
 gi|332278885|ref|ZP_08391298.1| flagellar biosynthesis protein [Shigella sp. D9]
 gi|81175289|sp|P0AC06|FLIP_ECO57 RecName: Full=Flagellar biosynthetic protein fliP; Flags: Precursor
 gi|81175290|sp|P0AC05|FLIP_ECOLI RecName: Full=Flagellar biosynthetic protein fliP; Flags: Precursor
 gi|12516055|gb|AAG56963.1|AE005417_5 flagellar biosynthesis [Escherichia coli O157:H7 str. EDL933]
 gi|347243|gb|AAC36859.1| flagellar protein [Escherichia coli]
 gi|1736614|dbj|BAA15773.1| flagellar biosynthesis protein [Escherichia coli str. K12 substr.
           W3110]
 gi|1788259|gb|AAC75015.1| flagellar biosynthesis protein [Escherichia coli str. K-12 substr.
           MG1655]
 gi|13362155|dbj|BAB36110.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           Sakai]
 gi|157078553|gb|ABV18261.1| flagellar biosynthetic protein FliP [Escherichia coli E24377A]
 gi|169889427|gb|ACB03134.1| flagellar biosynthesis protein [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170520148|gb|ACB18326.1| flagellar biosynthetic protein FliP [Escherichia coli SMS-3-5]
 gi|187767404|gb|EDU31248.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC4196]
 gi|188014148|gb|EDU52270.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999261|gb|EDU68247.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC4076]
 gi|189354902|gb|EDU73321.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC4401]
 gi|189359722|gb|EDU78141.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365562|gb|EDU83978.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370182|gb|EDU88598.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC869]
 gi|189375715|gb|EDU94131.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC508]
 gi|190901676|gb|EDV61432.1| flagellar biosynthetic protein FliP [Escherichia coli B7A]
 gi|192925965|gb|EDV80611.1| flagellar biosynthetic protein FliP [Escherichia coli E22]
 gi|192955543|gb|EDV86022.1| flagellar biosynthetic protein FliP [Escherichia coli E110019]
 gi|194412026|gb|EDX28338.1| flagellar biosynthetic protein FliP [Escherichia coli B171]
 gi|194421480|gb|EDX37494.1| flagellar biosynthetic protein FliP [Escherichia coli 101-1]
 gi|208725166|gb|EDZ74873.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731278|gb|EDZ79967.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739708|gb|EDZ87390.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC4042]
 gi|209161943|gb|ACI39376.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           EC4115]
 gi|209766788|gb|ACI81706.1| flagellar biosynthetic protein FliP [Escherichia coli]
 gi|209766790|gb|ACI81707.1| flagellar biosynthetic protein FliP [Escherichia coli]
 gi|209766792|gb|ACI81708.1| flagellar biosynthetic protein FliP [Escherichia coli]
 gi|209766794|gb|ACI81709.1| flagellar biosynthetic protein FliP [Escherichia coli]
 gi|209766796|gb|ACI81710.1| flagellar biosynthetic protein FliP [Escherichia coli]
 gi|217318163|gb|EEC26590.1| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str.
           TW14588]
 gi|218352285|emb|CAU98042.1| flagellar biosynthesis protein [Escherichia coli 55989]
 gi|218361296|emb|CAQ98880.1| flagellar biosynthesis protein [Escherichia coli IAI1]
 gi|226900664|gb|EEH86923.1| flagellar biosynthetic protein fliP [Escherichia sp. 3_2_53FAA]
 gi|238861098|gb|ACR63096.1| flagellar biosynthesis protein [Escherichia coli BW2952]
 gi|253324147|gb|ACT28749.1| flagellar biosynthetic protein FliP [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254592998|gb|ACT72359.1| flagellar biosynthesis protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|257759494|dbj|BAI30991.1| flagellar biosynthesis protein FliP [Escherichia coli O103:H2 str.
           12009]
 gi|260448939|gb|ACX39361.1| flagellar biosynthetic protein FliP [Escherichia coli DH1]
 gi|284921856|emb|CBG34931.1| flagellar biosynthetic protein FliP [Escherichia coli 042]
 gi|290762998|gb|ADD56959.1| Flagellar biosynthetic protein fliP precursor [Escherichia coli
           O55:H7 str. CB9615]
 gi|291323158|gb|EFE62586.1| flagellar biosynthetic protein FliP [Escherichia coli B088]
 gi|291432906|gb|EFF05885.1| flagellar biosynthetic protein FliP [Escherichia coli B185]
 gi|299877709|gb|EFI85920.1| flagellar biosynthetic protein FliP [Escherichia coli MS 196-1]
 gi|300412824|gb|EFJ96134.1| flagellar biosynthetic protein FliP [Escherichia coli MS 115-1]
 gi|300419852|gb|EFK03163.1| flagellar biosynthetic protein FliP [Escherichia coli MS 182-1]
 gi|308120395|gb|EFO57657.1| flagellar biosynthetic protein FliP [Escherichia coli MS 145-7]
 gi|310332430|gb|EFP99665.1| flagellar biosynthetic protein FliP [Escherichia coli 1827-70]
 gi|315136585|dbj|BAJ43744.1| flagellar biosynthetic protein fliP precursor [Escherichia coli
           DH1]
 gi|315286656|gb|EFU46089.1| flagellar biosynthetic protein FliP [Escherichia coli MS 110-3]
 gi|320191922|gb|EFW66569.1| Flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str.
           EC1212]
 gi|320198639|gb|EFW73239.1| Flagellar biosynthesis protein FliP [Escherichia coli EC4100B]
 gi|320641796|gb|EFX11184.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str.
           G5101]
 gi|320647155|gb|EFX15988.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H- str.
           493-89]
 gi|320652439|gb|EFX20737.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H- str.
           H 2687]
 gi|320658041|gb|EFX25803.1| flagellar biosynthesis protein FliP [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320658613|gb|EFX26307.1| flagellar biosynthesis protein FliP [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320668511|gb|EFX35338.1| flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323158573|gb|EFZ44587.1| flagellar biosynthetic protein FliP [Escherichia coli E128010]
 gi|323174672|gb|EFZ60292.1| flagellar biosynthetic protein FliP [Escherichia coli LT-68]
 gi|323183932|gb|EFZ69319.1| flagellar biosynthetic protein FliP [Escherichia coli 1357]
 gi|323948348|gb|EGB44335.1| flagellar biosynthetic protein FliP [Escherichia coli H120]
 gi|323956344|gb|EGB52087.1| flagellar biosynthetic protein FliP [Escherichia coli H263]
 gi|324018857|gb|EGB88076.1| flagellar biosynthetic protein FliP [Escherichia coli MS 117-3]
 gi|326342359|gb|EGD66140.1| Flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str.
           1044]
 gi|326344863|gb|EGD68610.1| Flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str.
           1125]
 gi|331039367|gb|EGI11587.1| flagellar biosynthetic protein FliP [Escherichia coli H736]
 gi|331074290|gb|EGI45610.1| flagellar biosynthetic protein FliP [Escherichia coli H591]
 gi|332101237|gb|EGJ04583.1| flagellar biosynthesis protein [Shigella sp. D9]
          Length = 245

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 100/247 (40%), Positives = 154/247 (62%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           M R    A  L+      A + L  + + P      +W   V+T    T L+  P +L+M
Sbjct: 1   MRRLLSVAPVLLWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +
Sbjct: 61  MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   A+++ A+P   FM   TRE DL LF  +A++      +   + +  RIL+P+++ 
Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVT 176

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV
Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 237 GSLAQSF 243


>gi|194434965|ref|ZP_03067208.1| flagellar biosynthetic protein FliP [Shigella dysenteriae 1012]
 gi|194416800|gb|EDX32926.1| flagellar biosynthetic protein FliP [Shigella dysenteriae 1012]
 gi|320182735|gb|EFW57619.1| Flagellar biosynthesis protein FliP [Shigella boydii ATCC 9905]
 gi|332095503|gb|EGJ00519.1| flagellar biosynthetic protein FliP [Shigella dysenteriae 155-74]
          Length = 245

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 100/245 (40%), Positives = 156/245 (63%), Gaps = 5/245 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           ++      L+L+TP L FA+        +P      +  V+T    T L+  P +L+M+T
Sbjct: 4   LLSVTPVLLWLITP-LAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMT 62

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +I+
Sbjct: 63  SFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKIS 122

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A+++ A+P   FM   TRE DL LF  +A++      +   + +  RIL+P+++ SE
Sbjct: 123 MQEALEKGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSE 178

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +
Sbjct: 179 LKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGS 238

Query: 241 LVKSF 245
           L +SF
Sbjct: 239 LAQSF 243


>gi|89068716|ref|ZP_01156102.1| flagellar biosynthesis protein [Oceanicola granulosus HTCC2516]
 gi|89045679|gb|EAR51741.1| flagellar biosynthesis protein [Oceanicola granulosus HTCC2516]
          Length = 282

 Score =  216 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 114/219 (52%), Positives = 157/219 (71%), Gaps = 7/219 (3%)

Query: 35  ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFM 94
           +S  I++   + T+LS+AP LLI++T F RF+IVFSILR+ +G+   PPN+V+ S+ALFM
Sbjct: 59  LSGRILQLIALITVLSLAPGLLIVMTSFTRFVIVFSILRSALGLNQTPPNVVLTSMALFM 118

Query: 95  TFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
           TF+VM P  + + E G+QPLM+N ITE  A++R+A+PF  FM  NTR  DL LF ++A  
Sbjct: 119 TFFVMQPVFEDAWEDGLQPLMSNAITEEQAVERIADPFKTFMFANTRPVDLDLFREIAAR 178

Query: 155 SHRNT-------DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
           +  +                 +R L+P+FMISELRR+F IGFLI LPF+ ID+IVA+I+M
Sbjct: 179 AGGDDAGAIELPPPETAADASWRELVPAFMISELRRAFTIGFLIFLPFIAIDLIVASILM 238

Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           + GMMMLPP  ISLPFKVIFFVLIDGW +L  +L++S++
Sbjct: 239 SAGMMMLPPVLISLPFKVIFFVLIDGWHMLAGSLIESYL 277


>gi|313895854|ref|ZP_07829408.1| flagellar biosynthetic protein FliP [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312975279|gb|EFR40740.1| flagellar biosynthetic protein FliP [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 255

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 95/224 (42%), Positives = 152/224 (67%), Gaps = 4/224 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           ++   +    +       ++   + T+LS+AP +LIM T F R ++V   LR  +   +V
Sbjct: 35  TVSLDVGTSENPQDVAASMQLLAVLTVLSLAPAMLIMTTSFVRIVVVIGFLRNALSTQNV 94

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PPN V+++L+LF+TFY+M+P   ++ E GI+P ++ QIT+  A++ V EP   FM + TR
Sbjct: 95  PPNQVVLALSLFLTFYIMAPYWGQANENGIRPYLDGQITQEQALENVVEPMRDFMFHQTR 154

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           E DL+LF++++ +   N      D +    LIP+F+ISEL+ +F+IGF+I +PF++IDMI
Sbjct: 155 ESDLALFVNLSDAERPN----SPDDVSTFTLIPAFIISELKTAFQIGFMIYIPFIVIDMI 210

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           VA+ +M+MGMMMLPP  ISLPFK++ FV++DGW LL+++L+ SF
Sbjct: 211 VASTLMSMGMMMLPPVMISLPFKILLFVMVDGWHLLIQSLIMSF 254


>gi|283785718|ref|YP_003365583.1| flagellar biosynthetic protein FliP [Citrobacter rodentium ICC168]
 gi|282949172|emb|CBG88780.1| flagellar biosynthetic protein FliP [Citrobacter rodentium ICC168]
          Length = 245

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 98/245 (40%), Positives = 154/245 (62%), Gaps = 5/245 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           ++      L+L +P +  A+        +P      +  V+T    T L+  P +L+M+T
Sbjct: 4   LLSLTLSGLWLFSP-VALAQLPGLVAQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMT 62

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +I+
Sbjct: 63  SFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVEAYQPFSEEKIS 122

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A+ + A+P   FM   TRE DL+LF  +A+S      +   + +  RIL+P+++ SE
Sbjct: 123 MQEALDKGAQPLREFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSE 178

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +
Sbjct: 179 LKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGS 238

Query: 241 LVKSF 245
           L +SF
Sbjct: 239 LAQSF 243


>gi|251789178|ref|YP_003003899.1| flagellar biosynthetic protein FliP [Dickeya zeae Ech1591]
 gi|247537799|gb|ACT06420.1| flagellar biosynthetic protein FliP [Dickeya zeae Ech1591]
          Length = 258

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 97/247 (39%), Positives = 159/247 (64%), Gaps = 8/247 (3%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           ++RY   ++ L+      A+  L  +++ P      +W   ++T    T LS  P +L+M
Sbjct: 16  LLRYPAASILLLIAPHALAQ--LPGIISQPLANGGQSWSLPIQTLVFITALSFIPAVLLM 73

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +TCF R IIV S+LR  +G  + PPN V++ L+LF+TF+VMSP L+R  +   +P   ++
Sbjct: 74  MTCFTRIIIVLSLLRNALGTPTAPPNQVLLGLSLFLTFFVMSPVLNRIYDEAYRPFSEDK 133

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   AI + ++P   FM   TRE DL+LF  +A        +   + +  R+L+P+++ 
Sbjct: 134 ISMEVAIDKGSQPLREFMLRQTREADLALFTRLAQIP----SLQGPEAVPMRVLVPAYVT 189

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF I +PFL+ID++VA+++MA+GMMM+PP +I+LPFK++ FVL+DGW LL+
Sbjct: 190 SELKTAFQIGFTIFIPFLLIDLVVASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLL 249

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 250 GSLAQSF 256


>gi|188492613|ref|ZP_02999883.1| flagellar biosynthetic protein FliP [Escherichia coli 53638]
 gi|188487812|gb|EDU62915.1| flagellar biosynthetic protein FliP [Escherichia coli 53638]
          Length = 245

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 100/247 (40%), Positives = 154/247 (62%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           M R    A  L+      A + L  + + P      +W   V+T    T L+  P +L+M
Sbjct: 1   MRRLLSVAPVLLWLVTPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +
Sbjct: 61  MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVNAYQPFSEEK 120

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   A+++ A+P   FM   TRE DL LF  +A++      +   + +  RIL+P+++ 
Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVT 176

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV
Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 237 GSLAQSF 243


>gi|221635440|ref|YP_002523316.1| flagellar biosynthetic protein FliP [Thermomicrobium roseum DSM
           5159]
 gi|221158046|gb|ACM07164.1| flagellar biosynthetic protein FliP [Thermomicrobium roseum DSM
           5159]
          Length = 271

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 86/206 (41%), Positives = 141/206 (68%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +    + T++S+ P +LI++T F R +IV S +R+ +G+  +PPN V+I LALF+T +VM
Sbjct: 67  LELVFLLTLVSLLPTILIVMTSFTRIVIVLSFVRSAIGVPQLPPNQVLIGLALFLTVFVM 126

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +PT        +QP +  +I + TA++R  +P   FM   TRE+D++LFM + +     T
Sbjct: 127 APTWQAVNRDALQPYLRGEINQRTALERGLQPLRTFMFRQTRERDIALFMSLGNLPRPRT 186

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                + +   +L+P+F++SEL+ +F +GF++ +PFL+ID+IV++ +MAMGM+M+PP  I
Sbjct: 187 ----PEDVPTWVLVPAFILSELKTAFTMGFVLFIPFLVIDLIVSSTLMAMGMIMVPPVVI 242

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FV++DGW LLV +LV SF
Sbjct: 243 SLPFKLLLFVMVDGWDLLVRSLVVSF 268


>gi|187935306|ref|YP_001885056.1| flagellar biosynthetic protein FliP [Clostridium botulinum B str.
           Eklund 17B]
 gi|187723459|gb|ACD24680.1| flagellar biosynthetic protein FliP [Clostridium botulinum B str.
           Eklund 17B]
          Length = 259

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 90/206 (43%), Positives = 141/206 (68%), Gaps = 3/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++    FTIL++ P ++IM+T F R +IVFS +++ MG+    PN ++  LALF+T ++M
Sbjct: 56  IKILIFFTILAVLPSIVIMLTSFTRIVIVFSFIKSAMGVQQAIPNQILTGLALFLTIFIM 115

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP  +       QP +   IT+  AI+  ++P   FM   TREKDL LF+++ +    N 
Sbjct: 116 SPVYNEVNTKAFQPYVEQSITQEEAIEIGSKPIKDFMLKQTREKDLELFVEINNV---NK 172

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           +    + + +  LIP+F ISEL+ +F++GFLI LPF++IDM+VA+++M+MGMMMLPP  +
Sbjct: 173 EELTRESVPFTTLIPAFAISELKTAFQMGFLIYLPFIVIDMVVASVLMSMGMMMLPPAMV 232

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FV++DGW LLV++L+ SF
Sbjct: 233 SLPFKLLLFVMVDGWYLLVKSLIMSF 258


>gi|320529418|ref|ZP_08030506.1| flagellar biosynthetic protein FliP [Selenomonas artemidis F0399]
 gi|320138384|gb|EFW30278.1| flagellar biosynthetic protein FliP [Selenomonas artemidis F0399]
          Length = 255

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 95/224 (42%), Positives = 151/224 (67%), Gaps = 4/224 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           ++   +    +       ++   + T+LS+AP +LIM T F R ++V   LR  +   +V
Sbjct: 35  TVSLDVGTSENPQDVAASMQLLAVLTVLSLAPAMLIMTTSFVRIVVVIGFLRNALSTQNV 94

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PPN V+++L+LF+TFY+M+P   ++ E GI+P ++ QIT+  A++ V EP   FM   TR
Sbjct: 95  PPNQVVLALSLFLTFYIMAPYWGQANENGIRPYLDGQITQEQALENVVEPMRDFMFRQTR 154

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           E DL+LF++++ +   N      D +    LIP+F+ISEL+ +F+IGF+I +PF++IDMI
Sbjct: 155 ESDLALFVNLSDAERPN----SPDDVSTFTLIPAFIISELKTAFQIGFMIYIPFIVIDMI 210

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           VA+ +M+MGMMMLPP  ISLPFK++ FV++DGW LL+++L+ SF
Sbjct: 211 VASTLMSMGMMMLPPVMISLPFKILLFVMVDGWHLLIQSLIMSF 254


>gi|322616972|gb|EFY13880.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618211|gb|EFY15103.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625882|gb|EFY22701.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322626334|gb|EFY23144.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632749|gb|EFY29494.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322639091|gb|EFY35784.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640407|gb|EFY37063.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647232|gb|EFY43731.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649920|gb|EFY46341.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655528|gb|EFY51836.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660306|gb|EFY56544.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662987|gb|EFY59194.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668172|gb|EFY64331.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674069|gb|EFY70163.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675579|gb|EFY71653.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322683010|gb|EFY79026.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686704|gb|EFY82682.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323195408|gb|EFZ80588.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198064|gb|EFZ83181.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323204464|gb|EFZ89470.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207554|gb|EFZ92502.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211007|gb|EFZ95867.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217539|gb|EGA02258.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220728|gb|EGA05172.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226685|gb|EGA10882.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231561|gb|EGA15674.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236004|gb|EGA20083.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240574|gb|EGA24617.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245466|gb|EGA29466.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247584|gb|EGA31535.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253953|gb|EGA37777.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323255519|gb|EGA39280.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262117|gb|EGA45680.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266240|gb|EGA49730.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323270651|gb|EGA54092.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 245

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 101/247 (40%), Positives = 156/247 (63%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           M R  F +L  +      A + L  +++ P      +W   V+T    T L+  P +L+M
Sbjct: 1   MRRLLFLSLAGLWLFSPTAAAQLPGLISQPLAGGGQSWSLSVQTLVFITSLTFLPAILLM 60

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +
Sbjct: 61  MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK 120

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   A+ + A+P   FM   TRE DL+LF  +A+S      +   + +  RIL+P+++ 
Sbjct: 121 ISMQEALDKGAQPLRAFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVT 176

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV
Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 237 GSLAQSF 243


>gi|150019068|ref|YP_001311322.1| flagellar biosynthetic protein FliP [Clostridium beijerinckii NCIMB
           8052]
 gi|149905533|gb|ABR36366.1| flagellar biosynthetic protein FliP [Clostridium beijerinckii NCIMB
           8052]
          Length = 259

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 97/225 (43%), Positives = 149/225 (66%), Gaps = 6/225 (2%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           S  D  + P D   S   ++    FTILS+ P ++IM+T F R ++VFS L++ MG+   
Sbjct: 41  SFGDGNSTPQDYVSS---IKILIFFTILSLLPSIVIMMTSFTRIVVVFSFLKSAMGVQQA 97

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
            PN ++  LA+F+T ++M P  +      IQP + N+IT+  A +  ++P   FM   TR
Sbjct: 98  VPNQILTGLAIFLTLFIMQPVYNEVNTKAIQPYLENKITQDQAFEEASKPLKAFMLKQTR 157

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           EKDL LF+++      N      +++ +  LIP+F ISEL+ +F+IGFLI LPFL+IDM+
Sbjct: 158 EKDLELFVEIGGVDKEN---LTKENVSFTTLIPAFAISELKTAFQIGFLIYLPFLVIDMV 214

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           V++++M+MGM MLPPT +SLPFK+I FV++DGW LLV++L++SF+
Sbjct: 215 VSSVLMSMGMFMLPPTMVSLPFKLILFVMVDGWYLLVKSLIQSFM 259


>gi|238025697|ref|YP_002909928.1| flagellar biosynthesis protein FliP [Burkholderia glumae BGR1]
 gi|237874891|gb|ACR27224.1| Flagellar biosynthetic protein FliP [Burkholderia glumae BGR1]
          Length = 266

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 95/228 (41%), Positives = 146/228 (64%), Gaps = 6/228 (2%)

Query: 20  KSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMG 77
            + L    + P     +T+   V+T  + T+LS  P +++M+T F R IIV S++R  +G
Sbjct: 42  AAGLPAFNSSPGPNGGTTYSLSVQTMLLLTMLSFLPAIVLMMTSFTRIIIVLSLMRQALG 101

Query: 78  MGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMR 137
             + PPN V++ LALF+T +VMSP +DR+   G +P     +    A+QR   PF  FM 
Sbjct: 102 TATTPPNQVLVGLALFLTLFVMSPVIDRAYNDGYKPFSAGTLPMDQAVQRGLAPFKTFML 161

Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197
             TRE DL+LF  +A +      +   + +   +L+P+F+ SEL+  F+IGF I +PFLI
Sbjct: 162 KQTREGDLALFAKIAKAP----AMQGPEDVPLPLLVPAFVTSELKTGFQIGFTIFIPFLI 217

Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ID++VA+++M+MGMMM+ PT+ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 218 IDLVVASVLMSMGMMMVSPTTISLPFKLMLFVLVDGWQLLIGSLAQSF 265


>gi|33601555|ref|NP_889115.1| flagellar biosynthesis protein FliP [Bordetella bronchiseptica
           RB50]
 gi|33575991|emb|CAE33071.1| flagellar biosynthetic protein FliP [Bordetella bronchiseptica
           RB50]
          Length = 263

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 101/236 (42%), Positives = 147/236 (62%), Gaps = 6/236 (2%)

Query: 12  VTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVF 69
           + P    A+++L  +   P      T+ +  +T  + T LS  P  L+M+T F R IIV 
Sbjct: 30  LWPSGALAQATLPALTATPGPNGSETYSLSMQTLLLMTSLSFLPAALLMMTGFTRIIIVL 89

Query: 70  SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129
            +LR+ MG    PPN V+I LALF+TFY MSP  D+      QPL    I   TA++R  
Sbjct: 90  GLLRSAMGTAMSPPNHVLIGLALFLTFYTMSPVFDKIYTDAYQPLAAGSIPFETAVERAG 149

Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189
            P   FM + TRE DL+LF ++A+       +     +  RILIP+F+ SEL+ +F+IGF
Sbjct: 150 SPLHNFMLHQTRENDLTLFANLANLP----AMEDPSQVPMRILIPAFITSELKTAFQIGF 205

Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            I +PFLIID++VA+++MA+GMMM+PP +++LPFK++ FVL DGW LL+ +L +SF
Sbjct: 206 TIFIPFLIIDLVVASVLMALGMMMVPPVTVALPFKLMLFVLADGWHLLLGSLAQSF 261


>gi|75675323|ref|YP_317744.1| flagellar biosynthesis protein FliP [Nitrobacter winogradskyi
           Nb-255]
 gi|74420193|gb|ABA04392.1| Flagellar transport protein FliP [Nitrobacter winogradskyi Nb-255]
          Length = 251

 Score =  216 bits (550), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 112/245 (45%), Positives = 165/245 (67%), Gaps = 6/245 (2%)

Query: 3   RYCFFALFLVTPELV--FAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           R  FF + +    L        +   +    +  ++   ++   + T+LSIAP +LIM+T
Sbjct: 9   RVSFFLILITAGSLTDPALAQDISINLGGAGNGGVTERAIQLIALLTVLSIAPSILIMMT 68

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R ++V S+LRT +G  + PPN VII+LA+F+T +VM PTL +S + GI+PL+ N+ T
Sbjct: 69  SFTRIVVVLSLLRTALGTATAPPNSVIIALAMFLTAFVMGPTLQKSYDEGIKPLVANETT 128

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A+QR + P   FM+ N RE+DL LFMD++      T       +  RIL+P+FMISE
Sbjct: 129 VEEALQRASVPLRGFMQKNVREQDLKLFMDLSGEPPPATPA----DLSLRILMPAFMISE 184

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+R+FEIGFL+ LPFLIID++VA+++M+MGMMMLPP  +SLPFK+IFFVL+DGW+L+  +
Sbjct: 185 LKRAFEIGFLLFLPFLIIDLVVASVLMSMGMMMLPPVVVSLPFKLIFFVLVDGWALVAGS 244

Query: 241 LVKSF 245
           LV+S+
Sbjct: 245 LVQSY 249


>gi|26248217|ref|NP_754257.1| flagellar biosynthesis protein FliP [Escherichia coli CFT073]
 gi|110642054|ref|YP_669784.1| flagellar biosynthesis protein FliP [Escherichia coli 536]
 gi|110805917|ref|YP_689437.1| flagellar biosynthesis protein FliP [Shigella flexneri 5 str. 8401]
 gi|161485898|ref|NP_707833.2| flagellar biosynthesis protein FliP [Shigella flexneri 2a str. 301]
 gi|191173282|ref|ZP_03034812.1| flagellar biosynthetic protein FliP [Escherichia coli F11]
 gi|218699491|ref|YP_002407120.1| flagellar biosynthesis protein FliP [Escherichia coli IAI39]
 gi|227885623|ref|ZP_04003428.1| flagellar biosynthesis protein FliP [Escherichia coli 83972]
 gi|300940403|ref|ZP_07154988.1| flagellar biosynthetic protein FliP [Escherichia coli MS 21-1]
 gi|300975537|ref|ZP_07173048.1| flagellar biosynthetic protein FliP [Escherichia coli MS 45-1]
 gi|301050691|ref|ZP_07197552.1| flagellar biosynthetic protein FliP [Escherichia coli MS 185-1]
 gi|306814229|ref|ZP_07448395.1| flagellar biosynthesis protein FliP [Escherichia coli NC101]
 gi|331647542|ref|ZP_08348634.1| flagellar biosynthetic protein FliP [Escherichia coli M605]
 gi|26108621|gb|AAN80824.1|AE016762_77 Flagellar biosynthetic protein fliP precursor [Escherichia coli
           CFT073]
 gi|110343646|gb|ABG69883.1| flagellar biosynthetic protein FliP precursor [Escherichia coli
           536]
 gi|110615465|gb|ABF04132.1| flagellar biosynthetic protein FliP [Shigella flexneri 5 str. 8401]
 gi|190906399|gb|EDV66008.1| flagellar biosynthetic protein FliP [Escherichia coli F11]
 gi|218369477|emb|CAR17242.1| flagellar biosynthesis protein [Escherichia coli IAI39]
 gi|222033687|emb|CAP76428.1| flagellar biosynthetic protein fliP [Escherichia coli LF82]
 gi|227837196|gb|EEJ47662.1| flagellar biosynthesis protein FliP [Escherichia coli 83972]
 gi|281179010|dbj|BAI55340.1| flagellar biosynthetic protein FliP [Escherichia coli SE15]
 gi|300297614|gb|EFJ53999.1| flagellar biosynthetic protein FliP [Escherichia coli MS 185-1]
 gi|300410306|gb|EFJ93844.1| flagellar biosynthetic protein FliP [Escherichia coli MS 45-1]
 gi|300454797|gb|EFK18290.1| flagellar biosynthetic protein FliP [Escherichia coli MS 21-1]
 gi|305852388|gb|EFM52839.1| flagellar biosynthesis protein FliP [Escherichia coli NC101]
 gi|307553961|gb|ADN46736.1| flagellar biosynthetic protein FliP [Escherichia coli ABU 83972]
 gi|312946541|gb|ADR27368.1| flagellar biosynthesis protein FliP [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315290265|gb|EFU49643.1| flagellar biosynthetic protein FliP [Escherichia coli MS 153-1]
 gi|315296482|gb|EFU55779.1| flagellar biosynthetic protein FliP [Escherichia coli MS 16-3]
 gi|320194339|gb|EFW68970.1| Flagellar biosynthesis protein FliP [Escherichia coli WV_060327]
 gi|323186704|gb|EFZ72026.1| flagellar biosynthetic protein FliP [Escherichia coli RN587/1]
 gi|324005853|gb|EGB75072.1| flagellar biosynthetic protein FliP [Escherichia coli MS 57-2]
 gi|324013503|gb|EGB82722.1| flagellar biosynthetic protein FliP [Escherichia coli MS 60-1]
 gi|330911754|gb|EGH40264.1| flagellar biosynthesis protein FliP [Escherichia coli AA86]
 gi|331043266|gb|EGI15404.1| flagellar biosynthetic protein FliP [Escherichia coli M605]
 gi|333004053|gb|EGK23587.1| flagellar biosynthetic protein FliP [Shigella flexneri K-272]
 gi|333017826|gb|EGK37133.1| flagellar biosynthetic protein FliP [Shigella flexneri K-227]
          Length = 245

 Score =  216 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 100/239 (41%), Positives = 154/239 (64%), Gaps = 5/239 (2%)

Query: 7   FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
             L+L+TP L FA+        +P      +  V+T    T L+  P +L+M+T F R I
Sbjct: 10  VLLWLITP-LAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +I+   A++
Sbjct: 69  IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           + A+P   FM   TRE DL LF  +A++      +   + +  RIL+P+++ SEL+ +F+
Sbjct: 129 KGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQ 184

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243


>gi|288958044|ref|YP_003448385.1| flagellar biosynthetic protein [Azospirillum sp. B510]
 gi|288910352|dbj|BAI71841.1| flagellar biosynthetic protein [Azospirillum sp. B510]
          Length = 266

 Score =  216 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 117/244 (47%), Positives = 168/244 (68%), Gaps = 6/244 (2%)

Query: 2   IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
           I      +  ++     A+S   D+ +  A  + +  IV+T G+ T+LS+AP +LIM+T 
Sbjct: 26  IGLALGLISGLSAGPALAQSLTFDLGD--AGGTATGRIVQTIGLITVLSLAPSILIMMTA 83

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F R +IV S LR  +G+  VPP  V++SLALF+TF+VM+P  +RS   GIQPLMN +I E
Sbjct: 84  FTRIVIVLSFLRNALGVQQVPPTTVMMSLALFLTFFVMAPVFERSYTQGIQPLMNQEIDE 143

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
             A +R   P   FM ++T EKDL LFMDMA    R  ++ + + +   +L+P+FMISE+
Sbjct: 144 MEAFRRTVAPLRDFMLHHTAEKDLRLFMDMA----RLQNVQEPNDMPLHVLVPAFMISEI 199

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
           +R FEIGFL+ LPFLIIDM+V++I+M+MGMMMLPPT +++PFK+IFFVL+DGW L+  +L
Sbjct: 200 KRGFEIGFLLFLPFLIIDMVVSSILMSMGMMMLPPTMVAIPFKIIFFVLVDGWYLIAGSL 259

Query: 242 VKSF 245
            +SF
Sbjct: 260 ARSF 263


>gi|161613452|ref|YP_001587417.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168259734|ref|ZP_02681707.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|161362816|gb|ABX66584.1| hypothetical protein SPAB_01169 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|205351247|gb|EDZ37878.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 245

 Score =  216 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 101/247 (40%), Positives = 156/247 (63%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           M R  F +L  +      A + L  +++ P      +W   V+T    T L+  P +L+M
Sbjct: 1   MRRLLFLSLAGLWLFSPVAAAQLPGLISQPLAGGGQSWSLSVQTLVFITSLTFLPAILLM 60

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +
Sbjct: 61  MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK 120

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   A+ + A+P   FM   TRE DL+LF  +A+S      +   + +  RIL+P+++ 
Sbjct: 121 ISMQEALDKGAQPLRAFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVT 176

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV
Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 237 GSLAQSF 243


>gi|168186132|ref|ZP_02620767.1| flagellar biosynthetic protein FliP [Clostridium botulinum C str.
           Eklund]
 gi|169295707|gb|EDS77840.1| flagellar biosynthetic protein FliP [Clostridium botulinum C str.
           Eklund]
          Length = 257

 Score =  216 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 89/248 (35%), Positives = 154/248 (62%), Gaps = 9/248 (3%)

Query: 4   YCFFALFLVTPELVFAKSS------LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLI 57
              FAL ++     +A  +      ++  ++           ++   + T++S+ P  L+
Sbjct: 11  LVMFALVVLGTTKAYAAPNTIPIPKINVSVDQANSPKDYVDNIKLLVMLTVISLLPSFLV 70

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           M+T F R I+V   +R+ +G    PPN +++ +ALF+T ++M+PT     +  I+P + N
Sbjct: 71  MMTSFTRIIVVLGFMRSALGTQQAPPNQILVGIALFLTIFIMAPTYKTINKEAIKPFLEN 130

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
           +IT+T A+   ++P   FM   TR+KDL LF+D++ +          +++   ++IPSF+
Sbjct: 131 KITQTEALNNASKPMREFMLKQTRDKDLELFLDISKTDKTKI---TKENVPMYVVIPSFI 187

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
           ISEL+ +F+IGFL+ +PFLIID++VA+++M+MGM MLPP  ISLPFK++ FV++DGW LL
Sbjct: 188 ISELKTAFKIGFLLFIPFLIIDIVVASVLMSMGMFMLPPVMISLPFKLLLFVMVDGWYLL 247

Query: 238 VENLVKSF 245
           V++LV  +
Sbjct: 248 VKSLVMGY 255


>gi|331683500|ref|ZP_08384101.1| flagellar biosynthetic protein FliP [Escherichia coli H299]
 gi|331079715|gb|EGI50912.1| flagellar biosynthetic protein FliP [Escherichia coli H299]
          Length = 245

 Score =  216 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 99/247 (40%), Positives = 153/247 (61%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           M R    A  L+      A + L  + + P      +W   V+T    T L+  P +L+M
Sbjct: 1   MRRLLSVAPVLLWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +
Sbjct: 61  MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   A+++  +P   FM   TRE DL LF  +A++      +   + +  RIL+P+++ 
Sbjct: 121 ISMQEALEKGVQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVT 176

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV
Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 237 GSLAQSF 243


>gi|146296296|ref|YP_001180067.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409872|gb|ABP66876.1| flagellar biosynthetic protein FliP [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 251

 Score =  216 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 97/242 (40%), Positives = 155/242 (64%), Gaps = 4/242 (1%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
           +    +     E+  A +S    +    +    +  ++     TIL++AP +LIM+T F 
Sbjct: 13  FIILIITFFKNEIAAASASFSLNLGDMNNPRDVSSAIQLIIFLTILTLAPSILIMMTSFT 72

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
           R +IV   +R  +G   +PPN ++I LALF+TF++M+P  +R       P +  QIT   
Sbjct: 73  RILIVLGFVRNALGTQQMPPNQILIGLALFLTFFIMAPVGERIYTQSYLPYIKGQITSQE 132

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
           A++R   P   FM  NTR+KDL LF+ +++++      T   ++  R++IP+F+ISEL+ 
Sbjct: 133 ALKRAEAPIKEFMLKNTRKKDLDLFIKLSNTN----PTTNVRNLPLRVVIPAFIISELKS 188

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
           +FE+GF+I +PFLIIDM+VA+I+M+MGM+M+PP  ISLPFK++ F+L+DGW L+VE+L+K
Sbjct: 189 AFEMGFIIYVPFLIIDMVVASILMSMGMLMIPPVMISLPFKILLFILVDGWGLVVESLIK 248

Query: 244 SF 245
           SF
Sbjct: 249 SF 250


>gi|317048609|ref|YP_004116257.1| flagellar biosynthetic protein FliP [Pantoea sp. At-9b]
 gi|316950226|gb|ADU69701.1| flagellar biosynthetic protein FliP [Pantoea sp. At-9b]
          Length = 244

 Score =  216 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 98/229 (42%), Positives = 150/229 (65%), Gaps = 6/229 (2%)

Query: 19  AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
           A + L  +++ P      +W   V+T    T L+  P +L+M+T F R IIVF +LR  +
Sbjct: 18  AHAQLPGLVSHPLANGGQSWSLPVQTLVFITSLTFIPAVLLMMTSFTRIIIVFGLLRNAL 77

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G  S PPN V++ LALF+TF++M+PT D+       P   ++I+   AI + A+P   FM
Sbjct: 78  GTPSAPPNQVLVGLALFLTFFIMAPTFDKIYSDAYLPFSQDKISMDVAIDKGAQPLREFM 137

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
              TRE DL+LF  +A++      I   + +  RIL+P+++ SEL+ +F+IGF + +PFL
Sbjct: 138 LRQTREADLALFARLANTP----PIEGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFL 193

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LLV +L +SF
Sbjct: 194 IIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLVGSLAQSF 242


>gi|331657994|ref|ZP_08358956.1| flagellar biosynthetic protein FliP [Escherichia coli TA206]
 gi|331056242|gb|EGI28251.1| flagellar biosynthetic protein FliP [Escherichia coli TA206]
          Length = 245

 Score =  216 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 100/239 (41%), Positives = 154/239 (64%), Gaps = 5/239 (2%)

Query: 7   FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
             L+L+TP L FA+        +P      +  V+T    T L+  P +L+M+T F R I
Sbjct: 10  VLLWLITP-LAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +I+   A++
Sbjct: 69  IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           + A+P   FM   TRE DL LF  +A++      +   + +  RIL+P+++ SEL+ +F+
Sbjct: 129 KGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQ 184

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243


>gi|238927449|ref|ZP_04659209.1| flagellar biosynthesis protein FliP [Selenomonas flueggei ATCC
           43531]
 gi|238884731|gb|EEQ48369.1| flagellar biosynthesis protein FliP [Selenomonas flueggei ATCC
           43531]
          Length = 256

 Score =  216 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 92/219 (42%), Positives = 148/219 (67%), Gaps = 4/219 (1%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
           +    +       ++   + TI+S+AP +L+M T F R ++V   LR  +   +VPPN V
Sbjct: 41  VGTSENPQDVATSMQILAVLTIMSLAPAILVMTTSFVRIVVVIGFLRNALSTQNVPPNQV 100

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           +I+L+LF+TFY+M+P   ++ E GIQP +  QIT+  A++ + +P   FM   TRE DL+
Sbjct: 101 VIALSLFLTFYIMAPYWGQANENGIQPYLAGQITQEQALENIVDPMREFMLRQTRESDLA 160

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
           LF++++ +   N      + +    LIP+F+ISEL+ +F++GF+I +PF++IDMIVA+ +
Sbjct: 161 LFVNLSDAPRPN----GPEDVSTFTLIPAFIISELKTAFQLGFMIYIPFIVIDMIVASTL 216

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+MGMMMLPP  ISLPFK++ FV++DGW LL+++L+ SF
Sbjct: 217 MSMGMMMLPPVMISLPFKILLFVMVDGWHLLIQSLIMSF 255


>gi|94266368|ref|ZP_01290067.1| Flagellar transport protein FliP [delta proteobacterium MLMS-1]
 gi|93453020|gb|EAT03508.1| Flagellar transport protein FliP [delta proteobacterium MLMS-1]
          Length = 252

 Score =  216 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 98/237 (41%), Positives = 151/237 (63%), Gaps = 9/237 (3%)

Query: 14  PELVFAKSSLHD-----VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIV 68
           P L  A+ ++        +         +  ++   + T+LS+AP +L+M+TCF R I+V
Sbjct: 19  PTLAGAQEAIPLPTFSLGIEEATTPGQVSMTIQLLLVLTVLSMAPAILLMMTCFTRLIVV 78

Query: 69  FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128
           FS LR  +G   +PPN V+I LALF+T ++M+P   +  +  + P M+ +I    A++  
Sbjct: 79  FSFLRNAIGTQQMPPNQVLIGLALFLTVFIMAPVFSQINQQAVGPYMDEEIGIEEALRTA 138

Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188
           AEP   FM   TREKDL LF+ ++ S          D +   +LIP+FMISEL+ +F IG
Sbjct: 139 AEPLREFMFKQTREKDLELFLGLSQSPRP----QNKDDVSTFVLIPAFMISELKTAFTIG 194

Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           F++ +PFL+IDM+VA+++++MGMMMLPP  I+LPFK++ FVL+DGW L+V +LV+SF
Sbjct: 195 FILFIPFLVIDMVVASVLLSMGMMMLPPIMIALPFKILLFVLVDGWYLIVGSLVRSF 251


>gi|56413108|ref|YP_150183.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362034|ref|YP_002141671.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56127365|gb|AAV76871.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197093511|emb|CAR58972.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 245

 Score =  216 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 101/247 (40%), Positives = 156/247 (63%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           M R  F +L  +      A + L  +++ P      +W   V+T    T L+  P +L+M
Sbjct: 1   MRRLLFLSLAGLWLFSPAAAAQLPGLISQPLAGGGQSWSLSVQTLVFITSLTFLPAILLM 60

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +
Sbjct: 61  MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK 120

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   A+ + A+P   FM   TRE DL+LF  +A+S      +   + +  RIL+P+++ 
Sbjct: 121 ISMQEALDKGAQPLCAFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVT 176

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV
Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 237 GSLAQSF 243


>gi|254473298|ref|ZP_05086695.1| flagellar biosynthetic protein FliP [Pseudovibrio sp. JE062]
 gi|211957414|gb|EEA92617.1| flagellar biosynthetic protein FliP [Pseudovibrio sp. JE062]
          Length = 251

 Score =  216 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 128/242 (52%), Positives = 168/242 (69%), Gaps = 2/242 (0%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
              FALF V P    A+      +      S S  I++   I T+LS+AP +LIMVT F 
Sbjct: 11  LSLFALFWVAPAS--AQEINLSDLLPAGQASASGRIIQYVMILTVLSLAPGILIMVTSFT 68

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
           RF++  S LR+G+G+ + P N+++ISLALFMTFYVM+PT D + + G+QPL+  +I+E  
Sbjct: 69  RFVVALSFLRSGIGLQTTPANIILISLALFMTFYVMAPTFDAAWKNGLQPLIKEEISEEV 128

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
           A + + +PF  FM +N REKDL LF D+A S+         + ++ R+LIP+FMISELRR
Sbjct: 129 AYEEMTKPFRRFMLDNVREKDLVLFDDLAVSAFNYEKDAPVEELDLRVLIPAFMISELRR 188

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
            FEIGFLI LPF++IDMIVATI M+MGMMMLPPT ISLPFKV+FFVLIDGW LL   L++
Sbjct: 189 GFEIGFLIALPFVVIDMIVATITMSMGMMMLPPTVISLPFKVLFFVLIDGWYLLTGGLIR 248

Query: 244 SF 245
           SF
Sbjct: 249 SF 250


>gi|254470348|ref|ZP_05083752.1| flagellar biosynthetic protein FliP [Pseudovibrio sp. JE062]
 gi|211960659|gb|EEA95855.1| flagellar biosynthetic protein FliP [Pseudovibrio sp. JE062]
          Length = 248

 Score =  216 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 114/244 (46%), Positives = 164/244 (67%), Gaps = 5/244 (2%)

Query: 2   IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
           I    FALFL       A+S   D      D S++   V+   + T+LS+AP +LIMVT 
Sbjct: 8   IGLLVFALFLFWFGPAAAQSISIDFGGGEGD-SVTERAVQLVMLLTVLSLAPSILIMVTS 66

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F R ++V S+LR+ +G+ + PPN V++SLALF+T +VM P  + + ++G +P++   I  
Sbjct: 67  FTRIVVVLSLLRSAIGLQTAPPNAVMLSLALFLTAFVMMPAFETAWDLGAKPMIEGTIEP 126

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
             A +R +EPF  FMR   RE DL LF ++A +    T     + +  R+L+P+FMISEL
Sbjct: 127 QEAFERASEPFHQFMRQQVRESDLLLFQELAKAPTPET----PEDLSLRVLVPAFMISEL 182

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
           RR+FEIGFL+ LPFLIID+++A+++M+MGMMMLPP  ISLPFK+IFFVL+DGW L+  +L
Sbjct: 183 RRAFEIGFLLYLPFLIIDLVIASVLMSMGMMMLPPIVISLPFKLIFFVLVDGWQLIAGSL 242

Query: 242 VKSF 245
           V+SF
Sbjct: 243 VRSF 246


>gi|187778762|ref|ZP_02995235.1| hypothetical protein CLOSPO_02357 [Clostridium sporogenes ATCC
           15579]
 gi|187772387|gb|EDU36189.1| hypothetical protein CLOSPO_02357 [Clostridium sporogenes ATCC
           15579]
          Length = 258

 Score =  216 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 95/234 (40%), Positives = 148/234 (63%), Gaps = 4/234 (1%)

Query: 12  VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
             P+       ++  ++   + +     ++   + T+L++ P  ++M+T F R I+VF  
Sbjct: 28  AAPQNTLPIPKINISVDNANNPTEYVDNIKLLIMLTVLTLLPSFIVMMTSFVRTIVVFGF 87

Query: 72  LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
           LR  MG    PPN V+I LALF+T ++M P         IQP M N+IT+  A++  A+P
Sbjct: 88  LRNAMGTQQSPPNQVMIGLALFLTLFIMRPVYTEINTKAIQPYMKNKITQEQAVEIGAKP 147

Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
              FM   TR+KDL LF+D+   + + T     D+    I++P+F+ISEL+ +F+IGFL+
Sbjct: 148 LRQFMLKQTRQKDLKLFVDLGKPNFKVT----KDNAPLDIVVPAFIISELKTAFQIGFLL 203

Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            +PFLIID++VA+++M+MGM MLPP  ISLPFK++ FV++DGW LLV++LV SF
Sbjct: 204 FIPFLIIDLVVASVLMSMGMFMLPPVMISLPFKLLLFVMVDGWYLLVKSLVMSF 257


>gi|323527702|ref|YP_004229855.1| flagellar biosynthetic protein FliP [Burkholderia sp. CCGE1001]
 gi|323384704|gb|ADX56795.1| flagellar biosynthetic protein FliP [Burkholderia sp. CCGE1001]
          Length = 277

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 100/240 (41%), Positives = 150/240 (62%), Gaps = 7/240 (2%)

Query: 10  FLVTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
               P L FA+++     N    P   +  +  V+T  + T+LS  P +++M+T F R I
Sbjct: 42  MFALPSLSFAQTAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTRII 101

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IV S+LR  +G  + PPN V++ LALF+T +VMSP LD++   G +P     +   TA+ 
Sbjct: 102 IVLSLLRQALGTTTTPPNQVLVGLALFLTLFVMSPVLDKAYTDGYKPFSEGTVPMETAVS 161

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           R   PF  FM   TRE DL+LF  ++H       +   + +   +L+PSF+ SEL+  F+
Sbjct: 162 RGLAPFKTFMLRQTRESDLALFARISH----AAPMQGPEDVPLSLLVPSFVTSELKTGFQ 217

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           IGF I +PFLIIDM+VA+++M+MGMMM+ P +ISLPFK++ FVL+DGW LL+ +L +SF+
Sbjct: 218 IGFTIFIPFLIIDMVVASVLMSMGMMMVSPATISLPFKLMLFVLVDGWQLLLGSLAQSFV 277


>gi|90418387|ref|ZP_01226299.1| flagellar biosynthetic protein fliP [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90338059|gb|EAS51710.1| flagellar biosynthetic protein fliP [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 257

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 129/221 (58%), Positives = 167/221 (75%), Gaps = 6/221 (2%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
            D + S  IV+ FGI TILSIAP LL+MVT F R +I  SILRTG+G+ + P NL++ISL
Sbjct: 36  GDSTASGRIVQLFGIVTILSIAPGLLVMVTSFTRIVIALSILRTGLGLQTTPANLILISL 95

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           +LFMTF+VM+PT DR+   G+QPL+NN+ITE  A  R++EPF  FM    R +DL+LF D
Sbjct: 96  SLFMTFFVMAPTFDRAWNDGLQPLLNNEITEEEAFYRISEPFKDFMLTQVRPEDLTLFGD 155

Query: 151 MAHSSHRNTDITKND------HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
           +A ++ R     +         ++ R LIP+FMISELRR FEIGFLI+LPFL+IDMIVAT
Sbjct: 156 IAAATSRERVEPEEQGAADERDVDLRELIPAFMISELRRGFEIGFLIVLPFLVIDMIVAT 215

Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           + M+MGMMMLPPT ISLPFK++FF+LIDGW++LV +LV+SF
Sbjct: 216 LTMSMGMMMLPPTIISLPFKILFFILIDGWNMLVGSLVRSF 256


>gi|253996309|ref|YP_003048373.1| flagellar biosynthetic protein FliP [Methylotenera mobilis JLW8]
 gi|253982988|gb|ACT47846.1| flagellar biosynthetic protein FliP [Methylotenera mobilis JLW8]
          Length = 251

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 102/234 (43%), Positives = 150/234 (64%), Gaps = 6/234 (2%)

Query: 14  PELVFAKSSLHDVMNIPADLSIS--TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
           P  V A  +L  V   P+       T  ++T  + T L+  P +++M+T F R IIV S+
Sbjct: 21  PFSVLAADALPLVHASPSAGGGQDYTLSLQTLILLTSLTFLPAIVLMMTGFTRIIIVLSL 80

Query: 72  LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
           LR  +G  SVPPN V+I LALF+TF+VMSP +D+      +PL  NQI+   A+ +   P
Sbjct: 81  LRQALGTQSVPPNQVMIGLALFLTFFVMSPVIDKIYVDAYKPLSENQISMQEAMDKGVAP 140

Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
              FM   TRE DL+LF+ MA        I   D +  ++L+P+F+ SEL+ +F+IGF I
Sbjct: 141 LKEFMLKQTREGDLALFVKMAEVEK----IESPDQVPLKVLVPAFVTSELKTAFQIGFAI 196

Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            +PFLIIDM+VA+++M+MGMMM+ P  ++LPFK++ FVL+DGW L++ +LV+SF
Sbjct: 197 FIPFLIIDMVVASVLMSMGMMMVSPAIVALPFKLMLFVLVDGWQLILGSLVESF 250


>gi|237731996|ref|ZP_04562477.1| flagellar biosynthesis protein FliP [Citrobacter sp. 30_2]
 gi|226907535|gb|EEH93453.1| flagellar biosynthesis protein FliP [Citrobacter sp. 30_2]
          Length = 245

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 99/245 (40%), Positives = 155/245 (63%), Gaps = 5/245 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           ++      L+L +P +  A+        +P      T  V+T    T L+  P +L+M+T
Sbjct: 4   LLSLTLAGLWLFSP-VALAQLPGLVSQPLPGGGQNWTLPVQTLVFITSLTFLPAILLMMT 62

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +I+
Sbjct: 63  SFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKIS 122

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A+++ A+P   FM   TRE DL+LF  +A+S      +   + +  RIL+P+++ SE
Sbjct: 123 MQEAMEKGAQPLREFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSE 178

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +
Sbjct: 179 LKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKMMLFVLVDGWQLLVGS 238

Query: 241 LVKSF 245
           L +SF
Sbjct: 239 LAQSF 243


>gi|324114209|gb|EGC08182.1| flagellar biosynthetic protein FliP [Escherichia fergusonii B253]
          Length = 245

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 99/247 (40%), Positives = 154/247 (62%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           M R       ++      A + L  ++  P      +W   V+T    T L+  P +L+M
Sbjct: 1   MRRLLTLIPAMLWLVTPCALAQLPGLVTQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +
Sbjct: 61  MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   A+++ A+P   FM   TRE DL+LF  +A++      I   + +  RIL+P+++ 
Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLALFARLANTG----PIQGPEVVPMRILLPAYVT 176

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV
Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 237 GSLAQSF 243


>gi|253990104|ref|YP_003041460.1| flagellar biosynthesis protein FliP [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253781554|emb|CAQ84717.1| flagellar biosynthetic protein flip precursor [Photorhabdus
           asymbiotica]
          Length = 251

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 100/245 (40%), Positives = 149/245 (60%), Gaps = 8/245 (3%)

Query: 3   RYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVT 60
           R       L+ P    A+  L  +++ P      +W   V+T    T L   P  L+M+T
Sbjct: 11  RLAITLTALILPMDAAAQ--LPGIISQPLANGGQSWSLPVQTLVFITALGFIPAALLMMT 68

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R IIV  +LR  +G  S PPN V++ LALFMTF++MSP  D+  +    P   ++I+
Sbjct: 69  SFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFMTFFIMSPVFDKVYQDAYLPFSEDKIS 128

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
             TA++  A+P   FM   TRE DL+LF  +A            D +  R+L+P+F+ SE
Sbjct: 129 LETALENGAKPLRQFMLRQTRENDLALFARLADQP----PFETADSVPMRVLMPAFITSE 184

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +
Sbjct: 185 LKTAFQIGFTLFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGS 244

Query: 241 LVKSF 245
           L +SF
Sbjct: 245 LAQSF 249


>gi|16765317|ref|NP_460932.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167993554|ref|ZP_02574648.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|1706856|sp|P54700|FLIP_SALTY RecName: Full=Flagellar biosynthetic protein fliP; Flags: Precursor
 gi|1066863|gb|AAB81319.1| fliP [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|16420514|gb|AAL20891.1| flagellar biosynthesis protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|205328373|gb|EDZ15137.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261247145|emb|CBG24968.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267993968|gb|ACY88853.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301158493|emb|CBW18003.1| flagellar biosynthetic protein FliP [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912969|dbj|BAJ36943.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321224624|gb|EFX49687.1| Flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323130258|gb|ADX17688.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332988868|gb|AEF07851.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 245

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 100/247 (40%), Positives = 156/247 (63%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           M R  F +L  +      A + L  +++ P      +W   V+T    T L+  P +L+M
Sbjct: 1   MRRLLFLSLAGLWLFSPAAAAQLPGLISQPLAGGGQSWSLSVQTLVFITSLTFLPAILLM 60

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +
Sbjct: 61  MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQK 120

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   A+ + A+P   FM   TRE DL+LF  +A+S      +   + +  RIL+P+++ 
Sbjct: 121 ISMQEALDKGAQPLRAFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVT 176

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LL+
Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLM 236

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 237 GSLAQSF 243


>gi|46200839|ref|ZP_00056386.2| COG1338: Flagellar biosynthesis pathway, component FliP
           [Magnetospirillum magnetotacticum MS-1]
          Length = 241

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 111/245 (45%), Positives = 163/245 (66%), Gaps = 5/245 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           MI      L            SL+  +  P   S ++ I++   + T+LS+AP +L+M+T
Sbjct: 1   MILAAAIGLGTALLAGPVLAQSLNIDLGGPQ-ASATSRIIQLIALTTVLSVAPSILVMIT 59

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F RF++V   LR  +G    PPN V++SLA+F+T +VM+PT +++   GIQP+M+  + 
Sbjct: 60  SFTRFVVVLGFLRQALGTQQSPPNTVMVSLAMFLTAFVMTPTFEKAWTDGIQPVMDGHLD 119

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
           E    +R  +PF  FM  + R +DL LFMDM+    R  ++ K + +  R LIP+FMISE
Sbjct: 120 EIEGFERAIKPFHAFMSKHVRAQDLKLFMDMS----RAKEVEKAEDVPLRALIPAFMISE 175

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           LRR+FEIGFLI LPFLIIDM++A+++M+MGMMM+PP  ISLPFK+IFFV++DGW L+V +
Sbjct: 176 LRRAFEIGFLIFLPFLIIDMVIASVLMSMGMMMIPPAMISLPFKLIFFVMVDGWYLVVGS 235

Query: 241 LVKSF 245
           LV+S+
Sbjct: 236 LVQSY 240


>gi|332756104|gb|EGJ86457.1| flagellar biosynthetic protein FliP [Shigella flexneri 4343-70]
 gi|333003359|gb|EGK22905.1| flagellar biosynthetic protein FliP [Shigella flexneri K-218]
          Length = 245

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 99/239 (41%), Positives = 154/239 (64%), Gaps = 5/239 (2%)

Query: 7   FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
             L+L+TP L FA+        +P      +  V+T    T L+  P +L+M+T F R I
Sbjct: 10  VLLWLITP-LAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTSFTRII 68

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IVF +LR  +G  S PPN V++ LALF+TF++MSP +++      QP    +I+   A++
Sbjct: 69  IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVINKIYVDAYQPFSEEKISMQEALE 128

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           + A+P   FM   TRE DL LF  +A++      +   + +  RIL+P+++ SEL+ +F+
Sbjct: 129 KGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQ 184

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243


>gi|291613058|ref|YP_003523215.1| flagellar biosynthetic protein FliP [Sideroxydans lithotrophicus
           ES-1]
 gi|291583170|gb|ADE10828.1| flagellar biosynthetic protein FliP [Sideroxydans lithotrophicus
           ES-1]
          Length = 248

 Score =  215 bits (548), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 96/246 (39%), Positives = 151/246 (61%), Gaps = 7/246 (2%)

Query: 3   RYCFFALFLVTPELVFAKSSLHDVMN---IPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           +   FAL        FA  S    +N    P      T  ++T  + + L+  P +L+M+
Sbjct: 5   KLIAFALLFAMSTSAFAAESGLLALNSTPTPGGGQTYTLSLQTLILISSLTFLPAILLMM 64

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R IIV  +LR+ +G  S PPN V++ LALF+TF+VM+P  D+       P   N+I
Sbjct: 65  TGFTRIIIVLGLLRSAIGTPSSPPNQVLVGLALFLTFFVMAPVFDKIYSDAYLPYSENKI 124

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           +   A ++ + P   FM   TRE DL+LF+ +++S      +   + +  +IL+P+++ S
Sbjct: 125 SLQQAYEKGSAPLKAFMLRQTRETDLALFVRISNS----EPLQSAEDVPMKILVPAYVTS 180

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+ +F+IGF++ +PFLIIDM+VA+++M+MGMMM+ P   SLPFK++ FVL DGW+LL+ 
Sbjct: 181 ELKTAFQIGFVVFIPFLIIDMVVASVLMSMGMMMVSPAVFSLPFKIMLFVLADGWNLLIG 240

Query: 240 NLVKSF 245
           +LV+SF
Sbjct: 241 SLVQSF 246


>gi|333003044|gb|EGK22598.1| flagellar biosynthetic protein FliP [Shigella flexneri VA-6]
          Length = 245

 Score =  215 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 100/247 (40%), Positives = 155/247 (62%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           M R    A  L+   +  A + L  + + P      +W   V+T    T L+  P +L+M
Sbjct: 1   MRRLFSVAPVLLWLIMPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +
Sbjct: 61  MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   A+++ A+P   FM   TRE DL LF  +A++      +   + +  RIL+P+++ 
Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVT 176

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV
Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 237 GSLAQSF 243


>gi|292669767|ref|ZP_06603193.1| flagellar biosynthetic protein FliP [Selenomonas noxia ATCC 43541]
 gi|292648564|gb|EFF66536.1| flagellar biosynthetic protein FliP [Selenomonas noxia ATCC 43541]
          Length = 249

 Score =  215 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 90/224 (40%), Positives = 150/224 (66%), Gaps = 4/224 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           ++   +    +       ++   + TI+S+AP +L+M T F R ++V   LR  +   +V
Sbjct: 29  TVSLGVGTSENPQDVATSMQLLAVLTIVSLAPAILVMTTSFVRIVVVIGFLRNALSTQNV 88

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PPN V+I+L+LF++FY+M+P   ++ E GIQP +  +I++  A++ V +P   FM   TR
Sbjct: 89  PPNQVVIALSLFLSFYIMAPYWGQANENGIQPYLAGEISQEQALENVVDPMREFMFRQTR 148

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           E DL+LF++++ +   +      + +    LIP+F+ISEL+ +F+IGF+I +PF++IDMI
Sbjct: 149 ESDLALFVNLSDAPRPD----GPEDVSTFTLIPAFIISELKTAFQIGFMIYIPFIVIDMI 204

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           VA+ +M+MGMMMLPP  ISLPFK++ FV++DGW LL+++L+ SF
Sbjct: 205 VASTLMSMGMMMLPPVMISLPFKILLFVMVDGWHLLIQSLIMSF 248


>gi|313144838|ref|ZP_07807031.1| flagellar biosynthesis protein FliP [Helicobacter cinaedi CCUG
           18818]
 gi|313129869|gb|EFR47486.1| flagellar biosynthesis protein FliP [Helicobacter cinaedi CCUG
           18818]
          Length = 266

 Score =  215 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 103/224 (45%), Positives = 149/224 (66%), Gaps = 4/224 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           S+   +  P + +     +    I T+L IAP L++++T F R +IVF+ LRT +G    
Sbjct: 46  SVDLSLTAPQEPTELVATLNIVLIITLLVIAPSLVLVMTSFTRIVIVFAFLRTALGTQQS 105

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PP  V++SLAL +TF++M P   +S E+GI+P    QI+   A +R   PF  FM  NTR
Sbjct: 106 PPTQVLVSLALVLTFFIMEPVATKSYEVGIKPYTEKQISYDEAFERAIVPFKDFMIKNTR 165

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           EKDL+LF  + +  +  T     D +   +LIP+FMISEL+ +F IGFL+ LPFL+IDM+
Sbjct: 166 EKDLALFFRIRNLENPQT----VDDVPLTVLIPAFMISELKTAFWIGFLLYLPFLVIDMV 221

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +++++MAMGMMMLPP  ISLPFK++ FVL+DGW+LL+ NLV+ F
Sbjct: 222 ISSVLMAMGMMMLPPVMISLPFKILVFVLVDGWNLLIGNLVQGF 265


>gi|254502570|ref|ZP_05114721.1| flagellar biosynthetic protein FliP [Labrenzia alexandrii DFL-11]
 gi|222438641|gb|EEE45320.1| flagellar biosynthetic protein FliP [Labrenzia alexandrii DFL-11]
          Length = 246

 Score =  215 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 132/245 (53%), Positives = 171/245 (69%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           M  +   A  L       A+      +    + S S  +++   + T+LS+AP +LIMVT
Sbjct: 1   MRLFLTVAALLALTGAAAAQVPDLSALLPEGEGSASGRVIQMIILLTVLSLAPGILIMVT 60

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F RF+I FS LR+G+G+ + P NL++ISLALFMTFYVM+PT DR+ E G++PLMNN+IT
Sbjct: 61  SFIRFVIAFSFLRSGIGLQTTPGNLILISLALFMTFYVMAPTFDRAWEDGVRPLMNNEIT 120

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
           E  A  ++ EPF  FM +  REKDL LF D+A     +      + +E R+LIP+FMISE
Sbjct: 121 EEEAYVKITEPFREFMLSQVREKDLVLFDDLAAGRVTDGSADSAEEVELRVLIPAFMISE 180

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           LRR FEIGFLI LPFL+IDMIVATI M+MGMMMLPPT ISLPFK +FF+LIDGW+LLV +
Sbjct: 181 LRRGFEIGFLIALPFLVIDMIVATITMSMGMMMLPPTVISLPFKALFFILIDGWNLLVGS 240

Query: 241 LVKSF 245
           LV+SF
Sbjct: 241 LVRSF 245


>gi|170769417|ref|ZP_02903870.1| flagellar biosynthetic protein FliP [Escherichia albertii TW07627]
 gi|170121741|gb|EDS90672.1| flagellar biosynthetic protein FliP [Escherichia albertii TW07627]
          Length = 245

 Score =  215 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 99/244 (40%), Positives = 154/244 (63%), Gaps = 4/244 (1%)

Query: 2   IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
           + +    LF +   L FA+        +P      +  V+T    T L+  P +L+M+T 
Sbjct: 4   LLWVTPVLFWLVTPLTFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLMMTS 63

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F R IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +I+ 
Sbjct: 64  FTRIIIVFGLLRNALGTLSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISM 123

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
             A+++ A+P   FM   TRE DL+LF  +A+S      +   + +  RIL+P+++ SEL
Sbjct: 124 QEALEKGAQPLREFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSEL 179

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
           + +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L
Sbjct: 180 KTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSL 239

Query: 242 VKSF 245
            +SF
Sbjct: 240 AQSF 243


>gi|33596149|ref|NP_883792.1| flagellar biosynthesis protein FliP [Bordetella parapertussis
           12822]
 gi|33573152|emb|CAE36802.1| flagellar biosynthetic protein FliP [Bordetella parapertussis]
          Length = 266

 Score =  215 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 101/236 (42%), Positives = 147/236 (62%), Gaps = 6/236 (2%)

Query: 12  VTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVF 69
           + P    A+++L  +   P      T+ +  +T  + T LS  P  L+M+T F R IIV 
Sbjct: 33  LWPSGALAQATLPALTATPGPNGSETYSLSMQTLLLMTSLSFLPAALLMMTGFTRIIIVL 92

Query: 70  SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129
            +LR+ MG    PPN V+I LALF+TFY MSP  D+      QPL    I   TA++R  
Sbjct: 93  GLLRSAMGTAMSPPNHVLIGLALFLTFYTMSPVFDKIYTDAYQPLAAGSIPFETAVERAG 152

Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189
            P   FM + TRE DL+LF ++A+       +     +  RILIP+F+ SEL+ +F+IGF
Sbjct: 153 SPLHNFMLHQTRENDLTLFANLANLP----AMEDPSQVPMRILIPAFITSELKTAFQIGF 208

Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            I +PFLIID++VA+++MA+GMMM+PP +++LPFK++ FVL DGW LL+ +L +SF
Sbjct: 209 TIFIPFLIIDLVVASVLMALGMMMVPPVTVALPFKLMLFVLADGWHLLLGSLAQSF 264


>gi|94264046|ref|ZP_01287846.1| Flagellar transport protein FliP [delta proteobacterium MLMS-1]
 gi|93455557|gb|EAT05744.1| Flagellar transport protein FliP [delta proteobacterium MLMS-1]
          Length = 252

 Score =  215 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 98/237 (41%), Positives = 151/237 (63%), Gaps = 9/237 (3%)

Query: 14  PELVFAKSSLHD-----VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIV 68
           P L  A+ ++        +         +  ++   + T+LS+AP +L+M+TCF R I+V
Sbjct: 19  PTLASAQEAIPLPTFSLGIEEATTPGQVSMTIQLLLVLTVLSMAPAILLMMTCFTRLIVV 78

Query: 69  FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128
           FS LR  +G   +PPN V+I LALF+T ++M+P   +  +  + P M+ +I    A++  
Sbjct: 79  FSFLRNAIGTQQMPPNQVLIGLALFLTVFIMAPVFSQINQQAVGPYMDEEIGIEEALRTA 138

Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188
           AEP   FM   TREKDL LF+ ++ S          D +   +LIP+FMISEL+ +F IG
Sbjct: 139 AEPLREFMFKQTREKDLELFLGLSQSPRP----QNKDDVSTFVLIPAFMISELKTAFTIG 194

Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           F++ +PFL+IDM+VA+++++MGMMMLPP  I+LPFK++ FVL+DGW L+V +LV+SF
Sbjct: 195 FILFIPFLVIDMVVASVLLSMGMMMLPPIMIALPFKILLFVLVDGWYLIVGSLVRSF 251


>gi|302392379|ref|YP_003828199.1| flagellar biosynthetic protein FliP [Acetohalobium arabaticum DSM
           5501]
 gi|302204456|gb|ADL13134.1| flagellar biosynthetic protein FliP [Acetohalobium arabaticum DSM
           5501]
          Length = 257

 Score =  215 bits (547), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 93/235 (39%), Positives = 149/235 (63%), Gaps = 4/235 (1%)

Query: 11  LVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
           +V     F    ++  +            ++   + T+LS+AP +LIM+T F R  +V S
Sbjct: 26  IVEAAPTFEIPDVNLSIETGEGSQNLALPLQIMLLLTVLSLAPAILIMLTSFVRIAVVLS 85

Query: 71  ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
           ++R  +    +PPN VII LA+F+T +VM+P   +  +  +QP ++++I +  A ++  +
Sbjct: 86  LIRRALATRRMPPNQVIIGLAIFLTIFVMAPVWGQIYDTAVQPYLDDEINQMQAYEQGIK 145

Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
           P   FM   TREKD++LF+D+         +     I   +LIP+F+ISELR +F+IGF+
Sbjct: 146 PLRKFMFKQTREKDIALFVDLGEIERPQNQM----EIPTYVLIPAFIISELRIAFQIGFI 201

Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           I LPF++IDMIVA+ +M+MGMMMLPP  ISLPFK++ FVL+DGW L++++L+K+F
Sbjct: 202 IYLPFIVIDMIVASTLMSMGMMMLPPVMISLPFKILLFVLVDGWYLVIKSLIKTF 256


>gi|319409181|emb|CBI82825.1| Flagellar biosynthetic protein fliP [Bartonella schoenbuchensis R1]
          Length = 253

 Score =  215 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 135/252 (53%), Positives = 187/252 (74%), Gaps = 11/252 (4%)

Query: 2   IRYCFFALFLVTPEL--VFAKSSLHDVMN------IPADLSISTWIVRTFGIFTILSIAP 53
           + + F  L LVT +   VFA+ +             P D  IS  IV+ FG+ T+LS+AP
Sbjct: 5   VGFVFMMLLLVTTDATDVFAQQTNLASTGGLSGLLAPTDGKISGRIVQLFGLLTVLSVAP 64

Query: 54  ILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQP 113
            LLIMVT F RF+I FS+LR+G+G+ + P NLV+ISLALFMTFYVM+PT + + E G+QP
Sbjct: 65  GLLIMVTSFTRFVIAFSLLRSGLGLQTTPSNLVMISLALFMTFYVMAPTFNTAWEQGVQP 124

Query: 114 LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILI 173
           L+ N+I+E  AI+++++PF  FM +  REKDL LF+D++     + ++     I++R+L+
Sbjct: 125 LIKNEISEQKAIEKISQPFREFMISQVREKDLDLFVDLSD---PSFNVKTGADIDFRVLV 181

Query: 174 PSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDG 233
           P+FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDG
Sbjct: 182 PAFMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDG 241

Query: 234 WSLLVENLVKSF 245
           W+LLV +L++SF
Sbjct: 242 WNLLVGSLIRSF 253


>gi|163758021|ref|ZP_02165109.1| putative flagellar biosynthetic protein FliP [Hoeflea phototrophica
           DFL-43]
 gi|162284310|gb|EDQ34593.1| putative flagellar biosynthetic protein FliP [Hoeflea phototrophica
           DFL-43]
          Length = 245

 Score =  215 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 140/247 (56%), Positives = 190/247 (76%), Gaps = 3/247 (1%)

Query: 1   MIRYCFFAL-FLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           MIR     +  +V      A++    ++  P D S+++WI+RTFG+ T+LS+AP +LIMV
Sbjct: 1   MIRLLSAVVAMMVIATAANAQALDPGLLQAPLDGSVASWIIRTFGLLTVLSVAPGILIMV 60

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T FPRFII F+ILR GMG+ + P N++++SLALFMTFYVM+PT DR+ E G+ PL+ +QI
Sbjct: 61  TSFPRFIIAFAILRAGMGLATTPANMILVSLALFMTFYVMAPTFDRAWENGVTPLLEDQI 120

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           TE  AIQ +A+PF  FM  NTR KDL+LF+D+A  + R      +  I+ R+L+P+FMIS
Sbjct: 121 TEEEAIQLIADPFRDFMLVNTRPKDLALFVDLA--TERGQSTETDGKIDMRVLVPAFMIS 178

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           E+RR FEIGFL++LPFL+ID++VATI MAMGMMMLPPT+ISLPFK++FFVLIDGW+LLV 
Sbjct: 179 EIRRGFEIGFLVVLPFLVIDLVVATITMAMGMMMLPPTAISLPFKILFFVLIDGWNLLVG 238

Query: 240 NLVKSFI 246
           +LV+SF+
Sbjct: 239 SLVRSFV 245


>gi|163856448|ref|YP_001630746.1| flagellar biosynthesis protein FliP [Bordetella petrii DSM 12804]
 gi|163260176|emb|CAP42478.1| flagellar biosynthesis protein FliP [Bordetella petrii]
          Length = 262

 Score =  215 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 100/235 (42%), Positives = 148/235 (62%), Gaps = 6/235 (2%)

Query: 13  TPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
            P  V A+++L  +   P      T+ +  +T  + T LS  P  L+M+T F R IIV  
Sbjct: 30  FPAGVVAQATLPALTATPGPGGAQTYSLSMQTLLLMTSLSFLPAALLMMTGFTRIIIVLG 89

Query: 71  ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
           +LR+ +G    PPN V+I LALF+TFY MSP  DR      +PL    I   TA++R A 
Sbjct: 90  LLRSALGTAMSPPNHVLIGLALFLTFYTMSPVFDRIYSEAYKPLSEGSIPFETAVERAAA 149

Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
           P   FM + TRE DL+LF ++A+       +     +  +IL+P+F+ SEL+ +F+IGF 
Sbjct: 150 PLHTFMLHQTRENDLTLFANLANQP----ALEDPSQVPMKILVPAFITSELKTAFQIGFT 205

Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           I +PFLIID++VA+++MA+GMMM+PP +++LPFK++ FVL DGW+LL+ +L  SF
Sbjct: 206 IFIPFLIIDLVVASVLMALGMMMVPPVTVALPFKLMLFVLADGWNLLLGSLASSF 260


>gi|37525861|ref|NP_929205.1| flagellar biosynthesis protein FliP [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36785290|emb|CAE14231.1| flagellar biosynthetic protein FliP [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 244

 Score =  215 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 100/245 (40%), Positives = 150/245 (61%), Gaps = 8/245 (3%)

Query: 3   RYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVT 60
           R       L+ P    A+  L  +++ P      +W   V+T    T L+  P  L+M+T
Sbjct: 4   RLGMILAALILPMDAAAQ--LPGIISQPLANGGQSWSLPVQTLVFITALTFIPAALLMMT 61

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R IIV  +LR  +G  S PPN V++ LALFMTF++MSP  D+  +    P   ++I+
Sbjct: 62  SFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFMTFFIMSPVFDKVYQDAYLPFSEDKIS 121

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
             TA++  A+P   FM   TRE DL+LF  +A            D +  R+L+P+F+ SE
Sbjct: 122 LETALENGAKPLRQFMLRQTRENDLALFARLADQP----PFETADSVPMRVLMPAFITSE 177

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +
Sbjct: 178 LKTAFQIGFTLFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGS 237

Query: 241 LVKSF 245
           L +SF
Sbjct: 238 LAQSF 242


>gi|310764878|gb|ADP09828.1| Flagellar biosynthetic protein FliP [Erwinia sp. Ejp617]
          Length = 247

 Score =  215 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 94/244 (38%), Positives = 152/244 (62%), Gaps = 4/244 (1%)

Query: 2   IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
           +      +  + P +    ++    +  P      T  V+T  + + L+  P +L+M+T 
Sbjct: 6   VLRALLLVAGMLPAVGALAANSDITLASPQGNGGWTLPVQTLVLLSSLTFLPAVLLMMTG 65

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F R IIV  ++R  +G  + PPN V++ LALF+TFYVMSP  ++  E   QPL  ++IT 
Sbjct: 66  FTRIIIVLGLMRNALGTPTAPPNQVLVGLALFLTFYVMSPVFNQIYEQAWQPLQEDKITM 125

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
             A+++  +P   FM + TRE DL++F  +A    +  +    + +   IL+P+F+ SEL
Sbjct: 126 EVALEQGVKPLRAFMLDQTRENDLAMFAQIA----KAGEFKGPEEVPLGILVPAFVTSEL 181

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
           + +F+IGF I +PFLIID++VA+I+MA+GMMM+PP +I+LPFK++ FVL+DGW LL+ +L
Sbjct: 182 KTAFQIGFTIFIPFLIIDLVVASILMALGMMMVPPATIALPFKLMLFVLVDGWQLLMGSL 241

Query: 242 VKSF 245
            +SF
Sbjct: 242 AQSF 245


>gi|90423026|ref|YP_531396.1| flagellar biosynthesis protein FliP [Rhodopseudomonas palustris
           BisB18]
 gi|90105040|gb|ABD87077.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris
           BisB18]
          Length = 254

 Score =  214 bits (546), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 118/247 (47%), Positives = 167/247 (67%), Gaps = 8/247 (3%)

Query: 3   RYCFFALFLVTPE----LVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIM 58
           R   F L L+          A+    ++   P    ++   ++   + T+LSIAP +LIM
Sbjct: 9   RVVAFLLTLIAAGSLADPALAQDISINLGGGPGGGGVTERAIQLIALLTVLSIAPSILIM 68

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R ++V S+LRT +G  + PPN VI++LALF+T +VM P L +S + GI+PL+ NQ
Sbjct: 69  MTSFTRIVVVLSLLRTALGTATAPPNSVILALALFLTAFVMGPVLQKSYDDGIKPLIANQ 128

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           IT   A+QR   P   FM+ N REKDL LFMD+++     T     D +  RIL+P+FMI
Sbjct: 129 ITVEEALQRAVVPLRGFMQKNVREKDLKLFMDLSNEPIPAT----PDDLSLRILVPAFMI 184

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+R+FEIGFL+ LPFLIID++VA+++M+MGMMMLPP  +SLPFK+IFFVL+DGWSL+ 
Sbjct: 185 SELKRAFEIGFLLFLPFLIIDLVVASVLMSMGMMMLPPVVVSLPFKLIFFVLVDGWSLVA 244

Query: 239 ENLVKSF 245
            +LV+S+
Sbjct: 245 GSLVQSY 251


>gi|296157442|ref|ZP_06840277.1| flagellar biosynthetic protein FliP [Burkholderia sp. Ch1-1]
 gi|295892214|gb|EFG71997.1| flagellar biosynthetic protein FliP [Burkholderia sp. Ch1-1]
          Length = 279

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 100/235 (42%), Positives = 150/235 (63%), Gaps = 7/235 (2%)

Query: 15  ELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
            L FA+++     N    P   +  +  V+T  + T+LS  P +++M+T F R IIV S+
Sbjct: 49  TLSFAQAAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTRIIIVLSL 108

Query: 72  LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
           LR  +G  + PPN V++ LALF+T +VMSP LD++   G +P  +  I   TA+ R   P
Sbjct: 109 LRQALGTTTTPPNQVLVGLALFLTLFVMSPVLDKAYTDGYKPFSDGSIPMETAVNRGLAP 168

Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
           F  FM   TRE DL+LF  ++H       +   + +   +L+PSF+ SEL+  F+IGF I
Sbjct: 169 FKTFMLRQTRESDLALFARISH----AAPMQGPEDVPLSLLVPSFVTSELKTGFQIGFTI 224

Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
            +PFLIIDM+VA+++M+MGMMM+ P +ISLPFK++ FVL+DGW LL+ +L +SF+
Sbjct: 225 FIPFLIIDMVVASVLMSMGMMMVSPATISLPFKLMLFVLVDGWQLLLGSLAQSFV 279


>gi|322421721|ref|YP_004200944.1| flagellar biosynthetic protein FliP [Geobacter sp. M18]
 gi|320128108|gb|ADW15668.1| flagellar biosynthetic protein FliP [Geobacter sp. M18]
          Length = 252

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 94/219 (42%), Positives = 150/219 (68%), Gaps = 7/219 (3%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
           ++ PAD+S+   +++ F + T++S+AP LL+M T F R ++V S LR+ +G    P N +
Sbjct: 40  VSKPADVSV---VLQIFFVMTVISLAPSLLMMTTSFTRIVVVLSFLRSALGTQQAPSNQI 96

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           ++ L+LF+TF++M+P   +     +QP   N IT+  A++R   P   FM +  REKDL+
Sbjct: 97  VVGLSLFLTFFIMAPVWQQVNTQALQPYKANTITQEEALKRGVAPLRKFMLSQVREKDLA 156

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
           LF++++            D I    LIP++M+SEL+ +F+IGFL+ +PFL++DM+VA+++
Sbjct: 157 LFINLSKLPRPK----NADDIPTMTLIPAYMVSELKTAFQIGFLVFIPFLVLDMVVASVL 212

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+MGMMMLPP  ISLPFK++ FVL+DGW L++ +LVKSF
Sbjct: 213 MSMGMMMLPPVMISLPFKILLFVLVDGWGLVIGSLVKSF 251


>gi|86750888|ref|YP_487384.1| flagellar biosynthesis protein FliP [Rhodopseudomonas palustris
           HaA2]
 gi|86573916|gb|ABD08473.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris
           HaA2]
          Length = 254

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 108/216 (50%), Positives = 159/216 (73%), Gaps = 4/216 (1%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
                ++   ++   + T+LSIAP +LIM+T F R ++V S+LRT +G  + PPN+VII+
Sbjct: 39  GGGTGVTERAIQLIALLTVLSIAPSILIMMTSFTRIVVVLSLLRTALGTATAPPNMVIIA 98

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           LALF+T +VM PTL +S + GI+PL+ N+++   A+ R + P  +FM+ N REKDL LF+
Sbjct: 99  LALFLTAFVMGPTLQKSYDDGIKPLIANEMSVEDALVRASGPLRIFMQKNVREKDLKLFL 158

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
           D++      T     + +  RIL+P+FMISEL+R+FEIGFL+ LPFLIID++VA+++M+M
Sbjct: 159 DLSGEPPPAT----PEDLSLRILMPAFMISELKRAFEIGFLLFLPFLIIDLVVASVLMSM 214

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMMLPP  +SLPFK+IFFVL+DGWSL+  +LV+S+
Sbjct: 215 GMMMLPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY 250


>gi|293395593|ref|ZP_06639876.1| flagellar biosynthetic protein FliP [Serratia odorifera DSM 4582]
 gi|291421912|gb|EFE95158.1| flagellar biosynthetic protein FliP [Serratia odorifera DSM 4582]
          Length = 259

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 94/229 (41%), Positives = 150/229 (65%), Gaps = 6/229 (2%)

Query: 19  AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
           A + L  +++ P      +W   V+T  + T LS  P +L+M+T F R IIV  +LR  +
Sbjct: 33  AIAQLPGLISQPLAGGGQSWTLPVQTLVLLTSLSFLPAMLLMMTSFTRIIIVLGLLRNAL 92

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G  + PPN V++ LALF+TF++M+P  D+  +    P   ++I+  TAI + A+P   FM
Sbjct: 93  GTPTAPPNQVMLGLALFLTFFIMAPVFDKVYQDAYLPFSQDKISMETAIDQGAQPLREFM 152

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
              TRE DL+L+  +A+       +   + +  RIL+P+++ SEL+ +F+IGF + +PFL
Sbjct: 153 LRQTREADLALYARLANLP----PLAGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFL 208

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 209 IIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 257


>gi|91976169|ref|YP_568828.1| flagellar biosynthesis protein FliP [Rhodopseudomonas palustris
           BisB5]
 gi|91682625|gb|ABE38927.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris
           BisB5]
          Length = 255

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 107/219 (48%), Positives = 158/219 (72%), Gaps = 4/219 (1%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
           +       ++   ++   + T+LSIAP +L+M+T F R ++V S+LRT +G  + PPN V
Sbjct: 37  LGGAGGTGVTERAIQLIALLTVLSIAPSILVMMTSFTRIVVVLSLLRTALGTATAPPNSV 96

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           II+LALF+T +VM PTL +S + GI+PL+ N++    A+ R + P  +FM+ N REKDL 
Sbjct: 97  IIALALFLTGFVMGPTLQKSYDDGIKPLIANEMAVEDALVRASGPLRIFMQKNVREKDLK 156

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
           LF+D++      T     + +  RIL+P+FMISEL+R+FEIGFL+ LPFLIID++VA+++
Sbjct: 157 LFLDLSGEQPPAT----PEELSLRILMPAFMISELKRAFEIGFLLFLPFLIIDLVVASVL 212

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+MGMMMLPP  +SLPFK+IFFVL+DGWSL+  +LV+S+
Sbjct: 213 MSMGMMMLPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY 251


>gi|74312488|ref|YP_310907.1| flagellar biosynthesis protein FliP [Shigella sonnei Ss046]
 gi|73855965|gb|AAZ88672.1| flagellar biosynthesis [Shigella sonnei Ss046]
 gi|323168931|gb|EFZ54611.1| flagellar biosynthetic protein FliP [Shigella sonnei 53G]
          Length = 245

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 99/247 (40%), Positives = 153/247 (61%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           M R    A  L+      A + L  + + P      +W   V+T    T L+  P +L+M
Sbjct: 1   MRRLLSVAPVLLWLVTPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIVF +LR  +G  S PPN V++ LALF+TF++MS  +D+      QP    +
Sbjct: 61  MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSSVIDKIYVDAYQPFSEEK 120

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   A+++ A+P   FM   TRE DL LF  +A++      +   + +  RIL+P+++ 
Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVT 176

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV
Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 237 GSLAQSF 243


>gi|170755849|ref|YP_001782265.1| flagellar biosynthesis protein FliP [Clostridium botulinum B1 str.
           Okra]
 gi|169121061|gb|ACA44897.1| flagellar biosynthetic protein FliP [Clostridium botulinum B1 str.
           Okra]
          Length = 258

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 95/234 (40%), Positives = 148/234 (63%), Gaps = 4/234 (1%)

Query: 12  VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
             P+       ++  ++   + +     ++   + T+L++ P  ++M+T F R I+VF  
Sbjct: 28  AAPQNTMPIPKINISVDNANNPTEYVDNIKLLIMLTVLTLLPSFIVMMTSFVRTIVVFGF 87

Query: 72  LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
           LR  MG    PPN V+I LALF+T ++M P         IQP M N+I +  A++  A+P
Sbjct: 88  LRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEINTKAIQPYMKNKINQEQAVEIGAKP 147

Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
              FM   TR+KDL LF+D+A  + + T     D+    I++P+F+ISEL+ +F+IGFL+
Sbjct: 148 LRQFMLKQTRQKDLKLFVDLAKPNFKVT----KDNAPLYIVVPAFIISELKTAFQIGFLL 203

Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            +PFLIID++VA+++M+MGM MLPP  ISLPFK++ FV++DGW LLV++LV SF
Sbjct: 204 FIPFLIIDLVVASVLMSMGMFMLPPVMISLPFKLLLFVMVDGWYLLVKSLVMSF 257


>gi|269836609|ref|YP_003318837.1| flagellar biosynthetic protein FliP [Sphaerobacter thermophilus DSM
           20745]
 gi|269785872|gb|ACZ38015.1| flagellar biosynthetic protein FliP [Sphaerobacter thermophilus DSM
           20745]
          Length = 274

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 92/227 (40%), Positives = 138/227 (60%), Gaps = 4/227 (1%)

Query: 19  AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           A+  +                +  F + T L++ P LL+MVT F R IIV S  R  +G+
Sbjct: 51  AQLRIDSGGAATGSAGTVNSGLELFVLLTFLALLPTLLMMVTSFTRVIIVLSFARNAIGV 110

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
             +PPN V++ LALF+T ++M+P         +QP +  +I +  A+ R   P   FM  
Sbjct: 111 PQLPPNQVLLGLALFLTIFIMAPVWQEVNRTALQPYLAGEIAQAEAMDRAVRPLREFMLR 170

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
            TRE+DL+LFM +       T     D +   +L+PSF++SEL+ +F++GF+I +PFLII
Sbjct: 171 QTRERDLALFMQLGQQPRPRT----PDDVPTWVLVPSFIVSELKTAFQMGFVIFIPFLII 226

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           DMIV++ +M+MGM+MLPP  +SLPFKV+ FV++DGW L+V +LV SF
Sbjct: 227 DMIVSSALMSMGMIMLPPVIVSLPFKVLLFVMVDGWDLIVRSLVMSF 273


>gi|293410304|ref|ZP_06653880.1| flagellar biosynthetic protein FliP [Escherichia coli B354]
 gi|291470772|gb|EFF13256.1| flagellar biosynthetic protein FliP [Escherichia coli B354]
          Length = 245

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 100/247 (40%), Positives = 154/247 (62%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           M R    A  L+      A + L  + + P      +W   V+T    T L+  P +L+M
Sbjct: 1   MRRLLSVAPVLLWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +
Sbjct: 61  MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   A+++ A+P   FM   TRE DL LF  +A++      +   + +  RIL+P+++ 
Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLGLFARLANTG----PLLGPEAVPMRILLPAYVT 176

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV
Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 237 GSLAQSF 243


>gi|330814980|ref|YP_004358685.1| Flagellar biosynthetic protein FliP [Burkholderia gladioli BSR3]
 gi|327367373|gb|AEA58729.1| Flagellar biosynthetic protein FliP [Burkholderia gladioli BSR3]
          Length = 279

 Score =  214 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 95/216 (43%), Positives = 142/216 (65%), Gaps = 4/216 (1%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P   +  +  V+T  + T+LS  P +++M+T F R IIV S+LR  +G  + PPN V++ 
Sbjct: 67  PNGGTTYSLSVQTMLLLTMLSFLPAIVLMMTSFTRIIIVLSLLRQALGTTTTPPNQVLVG 126

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           LALF+T +VMSP LDR+   G QP     +    A+QR   PF  FM   TRE DL+LF 
Sbjct: 127 LALFLTLFVMSPVLDRAYTDGYQPFSAGTLPMDQAVQRGLAPFKTFMLKQTRESDLALFA 186

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
            ++ +      +   + +   +L+P+F+ SEL+  F+IGF I +PFLIID++VA+++M+M
Sbjct: 187 RISKAP----PMQGPEDVPLPLLVPAFLTSELKTGFQIGFTIFIPFLIIDLVVASVLMSM 242

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMM+ PT+ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 243 GMMMVSPTTISLPFKLMLFVLVDGWQLLIGSLAQSF 278


>gi|170759449|ref|YP_001787969.1| flagellar biosynthesis protein FliP [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169406438|gb|ACA54849.1| flagellar biosynthetic protein FliP [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 258

 Score =  214 bits (545), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 96/234 (41%), Positives = 149/234 (63%), Gaps = 4/234 (1%)

Query: 12  VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
             P+       ++  ++   + +     ++   + T+L++ P  ++M+T F R I+VF  
Sbjct: 28  AAPQNTMPIPKINISVDNANNPTEYVDNIKLLIMLTVLTLLPSFIVMMTSFVRTIVVFGF 87

Query: 72  LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
           LR  MG    PPN V+I LALF+T ++M P         IQP M N+IT+  A++  A+P
Sbjct: 88  LRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEINTKAIQPYMKNKITQEQAVETGAKP 147

Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
              FM   TR+KDL LF+D+A  + + T     D+    I++P+F+ISEL+ +F+IGFL+
Sbjct: 148 LRQFMLKQTRQKDLKLFVDLAKPNFKVT----KDNAPLYIVVPAFIISELKTAFQIGFLL 203

Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            +PFLIID++VA+++M+MGM MLPP  ISLPFK++ FV++DGW LLV++LV SF
Sbjct: 204 FIPFLIIDLVVASVLMSMGMFMLPPVMISLPFKLLLFVMVDGWYLLVKSLVMSF 257


>gi|238755315|ref|ZP_04616658.1| Flagellar biosynthetic protein fliP [Yersinia ruckeri ATCC 29473]
 gi|238706451|gb|EEP98825.1| Flagellar biosynthetic protein fliP [Yersinia ruckeri ATCC 29473]
          Length = 262

 Score =  214 bits (545), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 94/227 (41%), Positives = 146/227 (64%), Gaps = 6/227 (2%)

Query: 21  SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           + L  +++ P      +W   V+T  + T LS  P  L+M+T F R IIV  +LR  +G 
Sbjct: 38  AQLPGIISQPLANGGQSWSLPVQTLVLITSLSFLPAALLMMTSFTRIIIVLGLLRNALGT 97

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
            S PPN V++ LALF+TF++MSP  D+  +    P   ++I+   AI + A+P   FM  
Sbjct: 98  PSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMDIAIDKGAQPLREFMLR 157

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
            TRE DL+L+  +A+           + +  RIL+P+++ SEL+ +F+IGF + +PFLII
Sbjct: 158 QTRETDLALYARLANMP----AFEGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLII 213

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           D++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 214 DLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 260


>gi|39936951|ref|NP_949227.1| flagellar biosynthesis protein FliP [Rhodopseudomonas palustris
           CGA009]
 gi|192292779|ref|YP_001993384.1| flagellar biosynthesis protein FliP [Rhodopseudomonas palustris
           TIE-1]
 gi|39650808|emb|CAE29331.1| putative flagellar biosynthesis protein fliP [Rhodopseudomonas
           palustris CGA009]
 gi|192286528|gb|ACF02909.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris
           TIE-1]
          Length = 254

 Score =  214 bits (545), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 110/239 (46%), Positives = 164/239 (68%), Gaps = 4/239 (1%)

Query: 7   FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
             +  V   +  A++    +        ++   ++   + T+LSIAP +L+M+T F R +
Sbjct: 16  VLIIAVLAMIAPAQAQDISINLGGNSPGVTERAIQLIALLTVLSIAPSILVMMTSFTRIV 75

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           +V S+LRT +G  + PPN VII+LALF+T +VM PTL +S + GI+PL+ N+I    A+ 
Sbjct: 76  VVLSLLRTALGTATAPPNAVIIALALFLTAFVMGPTLQKSYDEGIKPLIANEIGVDDAMV 135

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           R + P  +FM+ N REKDL LF+D++      T     + +  RIL+P+F+ISEL+R+FE
Sbjct: 136 RASGPLRIFMQKNVREKDLKLFLDLSGEPPPAT----PEDLSLRILMPAFLISELKRAFE 191

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGFL+ LPFLIID++VA+I+M+MGMMMLPP  +SLPFK+IFFVL+DGWSL+  +LV+S+
Sbjct: 192 IGFLLFLPFLIIDLVVASILMSMGMMMLPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY 250


>gi|253998478|ref|YP_003050541.1| flagellar biosynthesis protein FliP [Methylovorus sp. SIP3-4]
 gi|253985157|gb|ACT50014.1| flagellar biosynthetic protein FliP [Methylovorus sp. SIP3-4]
          Length = 258

 Score =  214 bits (545), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 96/238 (40%), Positives = 152/238 (63%), Gaps = 6/238 (2%)

Query: 10  FLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIA--PILLIMVTCFPRFII 67
            L  P L  A++++  +   P       + +    +  + S++  P +L+M+T F R II
Sbjct: 24  LLAIPALAHAEAAMPLINAAPGSGGSQNYTLSLQTLLLLTSLSFLPAVLLMMTGFTRIII 83

Query: 68  VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
           V S+LR  +G  + PPN V++ LALF+TF+VMSP +D+      QPL  N+IT   A+++
Sbjct: 84  VLSLLRQALGTPTSPPNQVLVGLALFLTFFVMSPVMDKIYVEAYQPLSENKITLQEALEK 143

Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
            A P   FM   TRE D++LFM ++    R+  +   +    R+L+P+FM SEL+ +F+I
Sbjct: 144 GAAPLKTFMLKQTREADIALFMRIS----RSDAVDGPEQTPLRVLVPAFMTSELKTAFQI 199

Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GF I +PFLIIDM+VA+++M+MGMMM+ P  ++LPFK++ FVL+DGW L++ +L +SF
Sbjct: 200 GFAIFIPFLIIDMVVASVLMSMGMMMVSPAIVALPFKLMLFVLVDGWQLVLGSLAESF 257


>gi|332343674|gb|AEE57008.1| flagellar biosynthetic protein FliP [Escherichia coli UMNK88]
          Length = 245

 Score =  214 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 99/247 (40%), Positives = 153/247 (61%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           M R    A  L+      A + L  + + P      +W   V+T    T L+  P +L+M
Sbjct: 1   MRRLLSVAPVLLWLITPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +
Sbjct: 61  MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   A+++ A+P   FM    RE DL LF  +A++      +   + +  RIL+P+++ 
Sbjct: 121 ISMQEALEKGAQPLREFMLRQIREADLGLFARLANTG----PLQGPEAVPMRILLPAYVT 176

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV
Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 237 GSLAQSF 243


>gi|319405407|emb|CBI79026.1| Flagellar biosynthetic protein fliP [Bartonella sp. AR 15-3]
          Length = 250

 Score =  214 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 133/246 (54%), Positives = 185/246 (75%), Gaps = 9/246 (3%)

Query: 6   FFALFLVTPELVFAKSSLHDVMNIPA------DLSISTWIVRTFGIFTILSIAPILLIMV 59
              + L+T  + FA+ +  +  +  A      + SIS  IV+ FG+ TILS+AP LLIMV
Sbjct: 8   VLMILLLTTTVAFAQKTGPENASSLAGLFSYPEGSISGRIVQFFGLLTILSVAPGLLIMV 67

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F RF I FS+LRTG+G+ + P NLV+ISLALFM+FYVM+PT + + E G+QPL++N+I
Sbjct: 68  TSFTRFAIAFSLLRTGLGLQTTPSNLVMISLALFMSFYVMAPTFNTAWEQGVQPLVSNKI 127

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           +E  AI+++++PF  FM +  REKDL LF+D++     +  +     +++R+LIP+FMIS
Sbjct: 128 SEQQAIEKISQPFREFMISQVREKDLDLFVDLSD---PSLQVKTGSDVDFRVLIPAFMIS 184

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           ELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW+LLV 
Sbjct: 185 ELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNLLVG 244

Query: 240 NLVKSF 245
           +LV+SF
Sbjct: 245 SLVRSF 250


>gi|304438440|ref|ZP_07398380.1| flagellar biosynthetic protein FliP [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304368523|gb|EFM22208.1| flagellar biosynthetic protein FliP [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 249

 Score =  214 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 92/240 (38%), Positives = 153/240 (63%), Gaps = 4/240 (1%)

Query: 6   FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65
           F  L +          +++  +    +       ++   + T++S+AP + +M T F R 
Sbjct: 13  FLLLGVGQASAAPLIPTVNVGVGTSNNPQDVATSMQVLAVLTVMSLAPAIFVMTTSFVRI 72

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
           ++V   LR  +   +VPPN V+I+L+LF+TFY+M+P   ++ E GIQP +  QIT+  A+
Sbjct: 73  VVVIGFLRNALSTQNVPPNQVVIALSLFLTFYIMAPYWGQANENGIQPYLEGQITQEQAL 132

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
           + + +P   FM   TRE DL+LF++++ +   +      + +    LIP+F+ISEL+ +F
Sbjct: 133 ENIVDPMREFMLRQTRESDLALFVNLSDAPRPD----GPEDVSTFTLIPAFIISELKTAF 188

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +IGF+I +PF++IDMIVA+ +M+MGMMMLPP  ISLPFK++ FV++DGW LL+++L+ SF
Sbjct: 189 QIGFMIYIPFIVIDMIVASTLMSMGMMMLPPVMISLPFKILLFVMVDGWHLLIQSLIMSF 248


>gi|304398865|ref|ZP_07380735.1| flagellar biosynthetic protein FliP [Pantoea sp. aB]
 gi|308187300|ref|YP_003931431.1| Flagellar biosynthetic protein fliP [Pantoea vagans C9-1]
 gi|304353569|gb|EFM17946.1| flagellar biosynthetic protein FliP [Pantoea sp. aB]
 gi|308057810|gb|ADO09982.1| Flagellar biosynthetic protein fliP [Pantoea vagans C9-1]
          Length = 244

 Score =  214 bits (545), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 98/245 (40%), Positives = 153/245 (62%), Gaps = 4/245 (1%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           M R       L+   +  A+       ++P      +  V+T    T L+  P +L+M+T
Sbjct: 2   MRRLLPLLPLLLLAPVAHAQLPGLVSHSLPNGGQSWSLPVQTLVFITALTFIPAVLLMMT 61

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R IIVF +LR  +G  S PPN V++ L+LF+TF++M+PT D+  +    P   ++I+
Sbjct: 62  SFTRIIIVFGLLRNALGTPSAPPNQVLLGLSLFLTFFIMAPTFDKIYQDAYLPFSQDKIS 121

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              AI + A+P   FM   TRE DL+LF  +A++      I   + +  RIL+P+++ SE
Sbjct: 122 MDVAIDKGAQPLREFMLRQTREADLALFARLANT----APIAGPEAVPMRILLPAYVTSE 177

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP SI+LPFK++ FVL+DGW LLV +
Sbjct: 178 LKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASIALPFKLMLFVLVDGWQLLVGS 237

Query: 241 LVKSF 245
           L +SF
Sbjct: 238 LAQSF 242


>gi|315657501|ref|ZP_07910383.1| flagellar biosynthetic protein FliP [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315491973|gb|EFU81582.1| flagellar biosynthetic protein FliP [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 422

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 83/209 (39%), Positives = 132/209 (63%), Gaps = 4/209 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  V  F + T+LSIAP LL+M+T F +  IV ++ R  MG+  +PPN VI  LA+F++ 
Sbjct: 217 STAVLVFLLITVLSIAPSLLLMMTSFTKIFIVLAMARNAMGLNQIPPNQVISGLAIFLSL 276

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           ++MSPT+    +  +QP M+ +I      +   +P   FM   TRE+D++L    A   +
Sbjct: 277 FIMSPTITSIWQDAVQPYMDGKIQVQDMFKLAEKPVREFMGPLTREEDIALMTRAADRPN 336

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
                   +   +  L+P+FMISE+R +F IGF++ +PFL+ID++V   +M+MGMMMLPP
Sbjct: 337 P----PSLEETPFTTLVPAFMISEVRSAFIIGFVVFIPFLVIDLVVGAALMSMGMMMLPP 392

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             +S+PFKV+ FV++DGW LL + L+ ++
Sbjct: 393 VMVSMPFKVLLFVMVDGWGLLTKTLIGTY 421


>gi|328543163|ref|YP_004303272.1| flagellar transport protein FliP [polymorphum gilvum SL003B-26A1]
 gi|326412909|gb|ADZ69972.1| Flagellar transport protein FliP [Polymorphum gilvum SL003B-26A1]
          Length = 245

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 106/226 (46%), Positives = 159/226 (70%), Gaps = 4/226 (1%)

Query: 20  KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79
             +    +      S++   V+   + T+LS+AP +L+MVT F R ++V S+LR+ +G+ 
Sbjct: 21  AGAQDLTIGFGEGASLTERAVQLVALLTVLSLAPSILVMVTSFTRIVVVLSLLRSAIGLQ 80

Query: 80  SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139
           + PPN+V++SLALF+T ++M+PTL  + E G+QPL+   I    A +R + PF  FM + 
Sbjct: 81  TAPPNMVMVSLALFLTAFIMAPTLQVAYEEGVQPLVEGTIEFDQAFERASTPFHAFMLSQ 140

Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
            REKDL+LF +++      T     + + ++ LIP+FMISELRR+FEIGFL+ LPFLIID
Sbjct: 141 VREKDLALFQELSGQEAPETQ----EDLSFQTLIPAFMISELRRAFEIGFLLYLPFLIID 196

Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++VA+++M+MGMMMLPP  ISLPFK+IFFVL+DGW+L+  +LV+SF
Sbjct: 197 LVVASVLMSMGMMMLPPVVISLPFKLIFFVLVDGWNLVAGSLVRSF 242


>gi|126442020|ref|YP_001057087.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei 668]
 gi|126453057|ref|YP_001064317.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei
           1106a]
 gi|134281410|ref|ZP_01768118.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 305]
 gi|217423958|ref|ZP_03455458.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 576]
 gi|226193182|ref|ZP_03788792.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
           Pakistan 9]
 gi|237814425|ref|YP_002898876.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
           MSHR346]
 gi|242316101|ref|ZP_04815117.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
           1106b]
 gi|254184095|ref|ZP_04890686.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
           1655]
 gi|254186561|ref|ZP_04893078.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254194632|ref|ZP_04901063.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei S13]
 gi|42766712|gb|AAS45439.1| putative flagellar biosynthesis protein [Burkholderia pseudomallei]
 gi|126221513|gb|ABN85019.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 668]
 gi|126226699|gb|ABN90239.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
           1106a]
 gi|134247077|gb|EBA47163.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 305]
 gi|157934246|gb|EDO89916.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169651382|gb|EDS84075.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei S13]
 gi|184214627|gb|EDU11670.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
           1655]
 gi|217393021|gb|EEC33043.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 576]
 gi|225934782|gb|EEH30759.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
           Pakistan 9]
 gi|237505052|gb|ACQ97370.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
           MSHR346]
 gi|242139340|gb|EES25742.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
           1106b]
          Length = 276

 Score =  214 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 94/216 (43%), Positives = 140/216 (64%), Gaps = 4/216 (1%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P   +  +  V+T  + T+LS  P +L+M+T F R IIV S+LR  +G  S PPN V++ 
Sbjct: 64  PNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQAIGTASTPPNQVLVG 123

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           LALF+T +VMSP LDR+     +P     +    A+QR   PF  FM   TRE DL+LF 
Sbjct: 124 LALFLTLFVMSPVLDRAYNDAYKPFSEGTLQMDQAVQRGTAPFKAFMLKQTRETDLALFA 183

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
            ++    +   +   + +   +L+P+F+ SEL+  F+IGF I +PFLIIDM+VA+++M+M
Sbjct: 184 KIS----KAAPMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSM 239

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMM+ P ++SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 240 GMMMVSPATVSLPFKLMLFVLVDGWQLLIGSLAQSF 275


>gi|312173310|emb|CBX81565.1| Flagellar biosynthetic protein FliP precursor [Erwinia amylovora
           ATCC BAA-2158]
          Length = 247

 Score =  214 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 95/244 (38%), Positives = 152/244 (62%), Gaps = 4/244 (1%)

Query: 2   IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
           +      +  + P +    ++    +  P      T  V+T  + + L+  P +L+M+T 
Sbjct: 6   VLRTLLLIAGMLPAVGALAANSDITLASPQGNGGWTLPVQTLVLLSSLTFLPAILLMMTG 65

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F R IIV  ++R  +G  + PPN V++ LALF+TFYVMSP  ++  E   QPL  ++IT 
Sbjct: 66  FTRIIIVLGLMRNALGTPTAPPNQVLVGLALFLTFYVMSPVFNQIYEQAWQPLQEDKITM 125

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
             A+++  +P   FM + TRE DL++F  MA    +  +    + +   IL+P+F+ SEL
Sbjct: 126 EVALEQGVKPLRAFMLDQTRENDLAMFAQMA----KAGEFKGPEEVPLGILVPAFVTSEL 181

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
           + +F+IGF I +PFLIID++VA+I+MA+GMMM+PP +I+LPFK++ FVL+DGW LL+ +L
Sbjct: 182 KTAFQIGFTIFIPFLIIDLVVASILMALGMMMVPPATIALPFKLMLFVLVDGWQLLMGSL 241

Query: 242 VKSF 245
            +SF
Sbjct: 242 AQSF 245


>gi|82702484|ref|YP_412050.1| flagellar biosynthesis protein FliP [Nitrosospira multiformis ATCC
           25196]
 gi|82410549|gb|ABB74658.1| flagellar biosynthetic protein FliP [Nitrosospira multiformis ATCC
           25196]
          Length = 262

 Score =  214 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 95/243 (39%), Positives = 152/243 (62%), Gaps = 8/243 (3%)

Query: 7   FALFLVTPELVFAKS--SLHDVMNIPADLSISTWIVRTFGIFTILSIA--PILLIMVTCF 62
             L L TP +  A++        + PA     T+ +    +  + S+   P +L+M+T F
Sbjct: 23  AVLLLTTPVVALAQAKGGFPAFSSTPAPRGGQTYSLSLQTLLLLTSLTFLPAVLLMMTGF 82

Query: 63  PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122
            R IIV S+LR  +G  S PPN V++ LALF+TF+VMSP  D+  +   QP + N++T  
Sbjct: 83  TRVIIVLSLLRQALGTQSSPPNQVLVGLALFLTFFVMSPVFDKIYQDAYQPYVENRMTME 142

Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182
            A+++ A P   FM   TRE DL+LF+ ++        +   + +  R+L+P+F+ SEL+
Sbjct: 143 QALEKGAVPLKAFMLKQTRETDLALFVKLSGRPQ----LNGPEEVSLRVLVPAFVTSELK 198

Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
            +F+IGF + +PFLIIDM+VA+++M+MGMMM+ P  ++LPFK++ FVL+DGW +L+ +L 
Sbjct: 199 TAFQIGFAVFIPFLIIDMVVASVLMSMGMMMVSPALVALPFKIMLFVLVDGWHMLIGSLA 258

Query: 243 KSF 245
           +SF
Sbjct: 259 ESF 261


>gi|312172107|emb|CBX80364.1| Flagellar biosynthetic protein FliP precursor [Erwinia amylovora
           ATCC BAA-2158]
          Length = 245

 Score =  214 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 100/247 (40%), Positives = 157/247 (63%), Gaps = 9/247 (3%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           +I     ALF++ P +    + L  +++ P      +W   V+T    T L+  P +L+M
Sbjct: 4   LIPLLLPALFMLAPNV---YAQLPGLISQPTANGGQSWSLPVQTLVFITSLTFLPAILLM 60

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIVF +LR  +G  S PPN V++ L+LF+TF++M P  D+      QP   ++
Sbjct: 61  MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLSLFLTFFIMGPVFDKIYTDAYQPFSEDK 120

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   AI + A+P   FM   TRE DL+LF  +A++      I   + +  RIL+P+++ 
Sbjct: 121 ISMQEAIDKGAQPLREFMLRQTREADLALFARLANTP----PIAGPEAVPMRILLPAYVT 176

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV
Sbjct: 177 SELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 237 SSLAQSF 243


>gi|296103568|ref|YP_003613714.1| flagellar biosynthesis protein FliP [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058027|gb|ADF62765.1| flagellar biosynthesis protein FliP [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 245

 Score =  214 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 96/247 (38%), Positives = 158/247 (63%), Gaps = 9/247 (3%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           ++      + L  P +    + L  +++ P      +W   V+T    T L+  P +L+M
Sbjct: 4   LLSLTLAGVGLFAPAV---YAQLPGLVSTPLAGGGQSWSLPVQTLVFITSLTFIPAILLM 60

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP   ++
Sbjct: 61  MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYTDAYQPFSEDK 120

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   A+++ A+P   FM   TRE DL+LF  ++++     ++   + +  RIL+P+++ 
Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLALFARLSNTG----ELQGPEAVPMRILLPAYVT 176

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV
Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKIMLFVLVDGWQLLV 236

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 237 SSLAQSF 243


>gi|153941323|ref|YP_001391949.1| flagellar biosynthesis protein FliP [Clostridium botulinum F str.
           Langeland]
 gi|152937219|gb|ABS42717.1| flagellar biosynthetic protein FliP [Clostridium botulinum F str.
           Langeland]
 gi|295319967|gb|ADG00345.1| flagellar biosynthetic protein FliP [Clostridium botulinum F str.
           230613]
          Length = 258

 Score =  214 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 96/234 (41%), Positives = 149/234 (63%), Gaps = 4/234 (1%)

Query: 12  VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
             P+       ++  ++   + +     ++   + T+L++ P  ++M+T F R I+VF  
Sbjct: 28  AAPQNTMPIPKINISVDNANNPTEYVDNIKLLIMLTVLTLLPSFIVMMTSFVRTIVVFGF 87

Query: 72  LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
           LR  MG    PPN V+I LALF+T ++M P         IQP M N+IT+  A++  A+P
Sbjct: 88  LRNAMGTQQSPPNQVMIGLALFLTLFIMYPVYSEVNTKAIQPYMKNKITQEQAVEIGAKP 147

Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
              FM   TR+KDL LF+D+A  + + T     D+    I++P+F+ISEL+ +F+IGFL+
Sbjct: 148 LRQFMLKQTRQKDLKLFVDLAKPNFKVT----KDNAPLYIVVPAFIISELKTAFQIGFLL 203

Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            +PFLIID++VA+++M+MGM MLPP  ISLPFK++ FV++DGW LLV++LV SF
Sbjct: 204 FIPFLIIDLVVASVLMSMGMFMLPPVMISLPFKLLLFVMVDGWYLLVKSLVMSF 257


>gi|315654594|ref|ZP_07907500.1| flagellar biosynthetic protein FliP [Mobiluncus curtisii ATCC
           51333]
 gi|315491058|gb|EFU80677.1| flagellar biosynthetic protein FliP [Mobiluncus curtisii ATCC
           51333]
          Length = 422

 Score =  214 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 83/209 (39%), Positives = 132/209 (63%), Gaps = 4/209 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  V  F + T+LSIAP LL+M+T F +  IV ++ R  MG+  +PPN VI  LA+F++ 
Sbjct: 217 STAVLVFLLITVLSIAPSLLLMMTSFTKIFIVLAMARNAMGLNQIPPNQVISGLAIFLSL 276

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           ++MSPT+    +  +QP M+ +I      +   +P   FM   TRE+D++L    A   +
Sbjct: 277 FIMSPTITSIWQDAVQPYMDGKIQVQDMFKLAEKPVREFMGPLTREEDIALMTRAADRPN 336

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
                   +   +  L+P+FMISE+R +F IGF++ +PFL+ID++V   +M+MGMMMLPP
Sbjct: 337 P----PSLEETPFTTLVPAFMISEVRSAFIIGFVVFIPFLVIDLVVGAALMSMGMMMLPP 392

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             +S+PFKV+ FV++DGW LL + L+ ++
Sbjct: 393 VMVSMPFKVLLFVMVDGWGLLTKTLIGTY 421


>gi|311992339|gb|ADQ26743.1| flagellar export component [Aeromonas hydrophila]
          Length = 258

 Score =  214 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 95/232 (40%), Positives = 144/232 (62%), Gaps = 7/232 (3%)

Query: 16  LVFAKSSLHDVM--NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73
           L  A+  +  V    +       +  ++   + T LS  P ++IM+T F R IIV  ILR
Sbjct: 26  LALAQDGMSAVTIKTMADGSQEYSLTLQVLALMTALSFLPAMVIMMTSFTRIIIVLGILR 85

Query: 74  TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133
             +G+   P N V+I +ALFM+F++MSP LDR     +QP +   I    A+++   P  
Sbjct: 86  QAIGLQQSPSNQVLIGIALFMSFFIMSPVLDRINNEALQPYLAETIQAKEALEKAELPIH 145

Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
            FM   TR KDL+ FM++A     N  + K   +  R+LIP+F+ SEL+ +F+IGF++ L
Sbjct: 146 QFMLAQTRIKDLNTFMEIA-----NVQVDKPADVPLRVLIPAFVTSELKTAFQIGFMLFL 200

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           PFL+ID++VA+I+MAMGMMML P  +SLPFK++ FV++DGW+L++ +L  SF
Sbjct: 201 PFLVIDLVVASILMAMGMMMLSPMLVSLPFKLMLFVMVDGWNLILGSLANSF 252


>gi|306817703|ref|ZP_07451445.1| flagellar biosynthetic protein FliP [Mobiluncus mulieris ATCC
           35239]
 gi|304649517|gb|EFM46800.1| flagellar biosynthetic protein FliP [Mobiluncus mulieris ATCC
           35239]
          Length = 425

 Score =  214 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 81/209 (38%), Positives = 133/209 (63%), Gaps = 4/209 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           T  V  F + T+LS+AP LL+M+T F +  IV ++ R  +G+  +PP  V+  LA+F++ 
Sbjct: 220 TTTVLVFLLITVLSVAPSLLLMMTSFTKIFIVLAMARNALGLNQIPPTQVLSGLAIFLSL 279

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           ++M+PT++      +QPL + +I      +   +PF  FM   TRE+D++L    A+  +
Sbjct: 280 FIMAPTVNTLWTDVVQPLTDGKIEVQEVFKLGEKPFRDFMGPLTREEDIALMTRAANRPN 339

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
                   D   +  L+P+FMISE+R +F IGF++ +PFL+ID++V   +M+MGMMMLPP
Sbjct: 340 PE----SLDKTPFTTLVPAFMISEVRSAFIIGFVVFIPFLVIDLVVGAALMSMGMMMLPP 395

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             +SLPFKV+ FV++DGW +L + L+ ++
Sbjct: 396 VMVSLPFKVLLFVMVDGWGMLTQTLIGTY 424


>gi|117618724|ref|YP_855914.1| flagellar biosynthesis protein FliP [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560131|gb|ABK37079.1| flagellar biosynthetic protein FliP [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 259

 Score =  214 bits (544), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 95/232 (40%), Positives = 144/232 (62%), Gaps = 7/232 (3%)

Query: 16  LVFAKSSLHDVM--NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73
           L  A+  +  V    +       +  ++   + T LS  P ++IM+T F R IIV  ILR
Sbjct: 27  LALAQDGMSAVTIKTMADGSQEYSLTLQVLALMTALSFLPAIVIMMTSFTRIIIVLGILR 86

Query: 74  TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133
             +G+   P N V+I +ALFM+F++MSP LDR     +QP +   I    A+++   P  
Sbjct: 87  QAIGLQQSPSNQVLIGIALFMSFFIMSPVLDRINNEALQPYLAETIQAKEALEKAELPIH 146

Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
            FM   TR KDL+ FM++A     N  + K   +  R+LIP+F+ SEL+ +F+IGF++ L
Sbjct: 147 QFMLAQTRIKDLNTFMEIA-----NVQVDKPADVPLRVLIPAFVTSELKTAFQIGFMLFL 201

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           PFL+ID++VA+I+MAMGMMML P  +SLPFK++ FV++DGW+L++ +L  SF
Sbjct: 202 PFLVIDLVVASILMAMGMMMLSPMLVSLPFKLMLFVMVDGWNLILGSLANSF 253


>gi|290475714|ref|YP_003468603.1| flagellar biosynthesis protein [Xenorhabdus bovienii SS-2004]
 gi|289175036|emb|CBJ81839.1| flagellar biosynthesis [Xenorhabdus bovienii SS-2004]
          Length = 269

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 95/229 (41%), Positives = 145/229 (63%), Gaps = 6/229 (2%)

Query: 19  AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
           A ++L  +++ P      +W   V+T    T L   P  L+M+T F R IIV  +LR  +
Sbjct: 43  AAAALPGIISQPMANGGQSWSLPVQTLVFITALGFIPAALLMMTSFTRIIIVLGLLRNAL 102

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G  S PPN ++I LALFMTF++MSP  D+  +    P   ++I+   A+ + A+P   FM
Sbjct: 103 GTPSAPPNQIMIGLALFMTFFIMSPVFDKVYQDAYLPFSEDKISLEAALDKGAQPLRQFM 162

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
              TR+ DL+LF  +A            D +  R+L+P+F+ SEL+ +F+IGF + +PFL
Sbjct: 163 LRQTRQTDLALFARLAD----QDAFETADSVPIRVLVPAFITSELKTAFQIGFTLFIPFL 218

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 219 IIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 267


>gi|330828809|ref|YP_004391761.1| flagellar biosynthetic protein FliP [Aeromonas veronii B565]
 gi|328803945|gb|AEB49144.1| Flagellar biosynthetic protein FliP [Aeromonas veronii B565]
          Length = 257

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 98/241 (40%), Positives = 146/241 (60%), Gaps = 5/241 (2%)

Query: 5   CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
               LF   P L     S   V  +       +  ++   + T LS  P ++IM+T F R
Sbjct: 17  LLIPLFCSWPALAQDAMSAVTVKTMGDGSQEYSLTLQVLALMTALSFLPAMVIMMTSFTR 76

Query: 65  FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
            I+V  ILR  +G+   P N V+I +ALFM+F++MSP LDR  +  +QP +   I    A
Sbjct: 77  IIVVLGILRQAIGLQQSPSNQVLIGIALFMSFFIMSPVLDRINDEALQPYLAETIQAKEA 136

Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
           ++R   P   FM   TR KDL+ FM++A     N  + K   +  R+LIP+F+ SEL+ +
Sbjct: 137 LERAELPIHQFMLAQTRIKDLNTFMEIA-----NVQVEKPADVPLRVLIPAFVTSELKTA 191

Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           F+IGF++ LPFL+ID++VA+I+MAMGMMML P  +SLPFK++ FV++DGW+L++ +L  S
Sbjct: 192 FQIGFMLFLPFLVIDLVVASILMAMGMMMLSPMIVSLPFKLMLFVMVDGWNLILGSLANS 251

Query: 245 F 245
           F
Sbjct: 252 F 252


>gi|322806978|emb|CBZ04548.1| flagellar biosynthesis protein FliP [Clostridium botulinum H04402
           065]
          Length = 258

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 96/234 (41%), Positives = 149/234 (63%), Gaps = 4/234 (1%)

Query: 12  VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
             P+       ++  ++   + +     ++   + T+L++ P  ++M+T F R I+VF  
Sbjct: 28  AAPQNTMPIPKINISVDNANNPTEYVDNIKLLIMLTVLTLLPSFIVMMTSFVRTIVVFGF 87

Query: 72  LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
           LR  MG    PPN V+I LALF+T ++M P         IQP M N+IT+  A++  A+P
Sbjct: 88  LRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEINTKAIQPYMKNKITQEQAVEIGAKP 147

Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
              FM   TR+KDL LF+D+A  + + T     D+    I++P+F+ISEL+ +F+IGFL+
Sbjct: 148 LRQFMLKQTRQKDLKLFVDLAKPNFKVT----KDNAPLYIVVPAFIISELKTAFQIGFLL 203

Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            +PFLIID++VA+++M+MGM MLPP  ISLPFK++ FV++DGW LLV++LV SF
Sbjct: 204 FIPFLIIDLVVASVLMSMGMFMLPPVMISLPFKLLLFVMVDGWYLLVKSLVMSF 257


>gi|170694404|ref|ZP_02885558.1| flagellar biosynthetic protein FliP [Burkholderia graminis C4D1M]
 gi|170140827|gb|EDT09001.1| flagellar biosynthetic protein FliP [Burkholderia graminis C4D1M]
          Length = 284

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 102/246 (41%), Positives = 153/246 (62%), Gaps = 7/246 (2%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVT 60
               A+ L  P L FA+++     N    P   +  +  V+T  + T+LS  P +++M+T
Sbjct: 43  VVLPAIMLALPTLSFAQTAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMVLMMT 102

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R IIV S+LR  +G  + PPN V++ LALF+T +VMSP LD++   G +P     + 
Sbjct: 103 SFTRIIIVLSLLRQALGTTTTPPNQVLVGLALFLTLFVMSPVLDKAYTDGYKPFSEGTVP 162

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
             TA+ R   PF  FM   TRE DL+LF  ++H       +   + +   +L+PSF+ SE
Sbjct: 163 METAVSRGLAPFKTFMLRQTRESDLALFARISH----AAPMQGPEDVPLSLLVPSFVTSE 218

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+  F+IGF I +PFLIIDM+VA+++M+MGMMM+ P +ISLPFK++ FVL+DGW LL+ +
Sbjct: 219 LKTGFQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATISLPFKLMLFVLVDGWQLLLGS 278

Query: 241 LVKSFI 246
           L +SF+
Sbjct: 279 LAQSFV 284


>gi|170748101|ref|YP_001754361.1| flagellar biosynthetic protein FliP [Methylobacterium radiotolerans
           JCM 2831]
 gi|170654623|gb|ACB23678.1| flagellar biosynthetic protein FliP [Methylobacterium radiotolerans
           JCM 2831]
          Length = 245

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 129/246 (52%), Positives = 169/246 (68%), Gaps = 3/246 (1%)

Query: 1   MIRYCFFAL-FLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           M+R  F A   L+      A+S   D +  P + S+S  +++   + T+LSIAP LL+MV
Sbjct: 1   MLRRVFLASPLLLVATAATAQSFSLDQVLPPGNGSVSGRMIQLIALMTVLSIAPGLLVMV 60

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F RF++  S LR+G+G+ S P NLV+ISL+LFMTFYVM PT DR+ + G++PL  N+I
Sbjct: 61  TSFTRFVVALSFLRSGLGLQSAPANLVLISLSLFMTFYVMGPTFDRAWQDGVRPLTENRI 120

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           TE  A  +V  PF  FM  + R KDL  F ++A S+              RILIP+FMIS
Sbjct: 121 TEEEAFAKVTAPFRDFMLAHVRPKDLDTFAEIAASNLSKAPDGGRTD--LRILIPAFMIS 178

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           ELRR FEIGFLI LPFL+IDM++A +VM+MGMMMLPPT ISLPFK++FFVLIDGW++LV 
Sbjct: 179 ELRRGFEIGFLIALPFLVIDMVIAVLVMSMGMMMLPPTVISLPFKILFFVLIDGWNMLVS 238

Query: 240 NLVKSF 245
            LVKS+
Sbjct: 239 GLVKSY 244


>gi|304390236|ref|ZP_07372190.1| flagellar biosynthesis protein FliP [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304326718|gb|EFL93962.1| flagellar biosynthesis protein FliP [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 422

 Score =  213 bits (543), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 83/209 (39%), Positives = 132/209 (63%), Gaps = 4/209 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  V  F + T+LSIAP LL+M+T F +  IV ++ R  MG+  +PPN VI  LA+F++ 
Sbjct: 217 STAVLVFLLITVLSIAPSLLLMMTSFTKIFIVLAMARNAMGLNQLPPNQVISGLAIFLSL 276

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           ++MSPT+    +  +QP M+ +I      +   +P   FM   TRE+D++L    A   +
Sbjct: 277 FIMSPTITSIWQDAVQPYMDGKIQVQDMFKLAEKPVREFMGPLTREEDIALMTRAADRPN 336

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
                   +   +  L+P+FMISE+R +F IGF++ +PFL+ID++V   +M+MGMMMLPP
Sbjct: 337 P----PSLEETPFTTLVPAFMISEVRSAFIIGFVVFIPFLVIDLVVGAALMSMGMMMLPP 392

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             +S+PFKV+ FV++DGW LL + L+ ++
Sbjct: 393 VMVSMPFKVLLFVMVDGWGLLTKTLIGTY 421


>gi|298346006|ref|YP_003718693.1| flagellar biosynthesis protein FliP [Mobiluncus curtisii ATCC
           43063]
 gi|298236067|gb|ADI67199.1| flagellar biosynthesis protein FliP [Mobiluncus curtisii ATCC
           43063]
          Length = 422

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 83/209 (39%), Positives = 132/209 (63%), Gaps = 4/209 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  V  F + T+LSIAP LL+M+T F +  IV ++ R  MG+  +PPN VI  LA+F++ 
Sbjct: 217 STAVLVFLLITVLSIAPSLLLMMTSFTKIFIVLAMARNAMGLNQIPPNQVISGLAIFLSL 276

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           ++MSPT+    +  +QP M+ +I      +   +P   FM   TRE+D++L    A   +
Sbjct: 277 FIMSPTITSIWQDAVQPYMDGKIQVQDMFKLAEKPVREFMGPLTREEDIALMTRAADRPN 336

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
                   +   +  L+P+FMISE+R +F IGF++ +PFL+ID++V   +M+MGMMMLPP
Sbjct: 337 P----PSLEETPFTTLVPAFMISEVRSAFIIGFVVFIPFLVIDLVVGAALMSMGMMMLPP 392

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             +S+PFKV+ FV++DGW LL + L+ ++
Sbjct: 393 VMVSMPFKVLLFVMVDGWGLLTKTLIGTY 421


>gi|110632650|ref|YP_672858.1| flagellar biosynthesis protein FliP [Mesorhizobium sp. BNC1]
 gi|110283634|gb|ABG61693.1| flagellar biosynthetic protein FliP [Chelativorans sp. BNC1]
          Length = 246

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 138/229 (60%), Positives = 177/229 (77%), Gaps = 2/229 (0%)

Query: 17  VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
             A++     +   A+ S   +I++ FG+ T+LSIAP +LIMVT F RF+IVFSILRTG+
Sbjct: 19  AAAQTLDLGALAGQANGSTIGYIIQIFGLLTVLSIAPGILIMVTSFTRFVIVFSILRTGI 78

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G+ S P NL+++SLALFMTFYVM+PT DR+   G++PLM NQI ETTA++R+AEPF  FM
Sbjct: 79  GLPSTPANLILVSLALFMTFYVMAPTFDRAWSEGVRPLMANQIDETTAVERIAEPFRAFM 138

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
             N RE+D +LF D+A  + R       D  + R+LIP+FMISE+RR FEIGFLI+LPFL
Sbjct: 139 SANVREEDYTLFADLA--AERGGIQQTTDQADLRVLIPAFMISEIRRGFEIGFLIVLPFL 196

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +ID+IVATI MAMGMMMLPPT ISLPFK++FFVLIDGW+LLV +LV+SF
Sbjct: 197 VIDLIVATITMAMGMMMLPPTVISLPFKILFFVLIDGWNLLVGSLVRSF 245


>gi|328496288|gb|AEB21292.1| FliP [Yersinia ruckeri]
          Length = 263

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 94/227 (41%), Positives = 146/227 (64%), Gaps = 6/227 (2%)

Query: 21  SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           + L  +++ P      +W   V+T  + T LS  P  L+M+T F R IIV  +LR  +G 
Sbjct: 39  AQLPGIISQPLANGGQSWSLPVQTLVLITSLSFLPAALLMMTSFTRIIIVLGLLRNALGT 98

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
            S PPN V++ LALF+TF++MSP  D+  +    P   ++I+   AI + A+P   FM  
Sbjct: 99  PSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMDIAIDKGAQPLREFMLR 158

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
            TRE DL+L+  +A+           + +  RIL+P+++ SEL+ +F+IGF + +PFLII
Sbjct: 159 QTRETDLALYARLANMP----AFEGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLII 214

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           D++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 215 DLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 261


>gi|330445376|ref|ZP_08309028.1| flagellar biosynthetic protein FliP [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489567|dbj|GAA03525.1| flagellar biosynthetic protein FliP [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 282

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 94/221 (42%), Positives = 141/221 (63%), Gaps = 5/221 (2%)

Query: 25  DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
            V   P      +  ++   + T L   P ++I++T F R ++V SILR  MG+   P N
Sbjct: 65  SVTVNPDGSEDYSVTLQILALMTALGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSN 124

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
            VII +ALF+TF+VMSP +D+     +QP +N QIT   A+++  +P   FM   TR KD
Sbjct: 125 QVIIGIALFLTFFVMSPVIDKINTEAVQPYINEQITAKQALEKAEDPMRQFMLKQTRVKD 184

Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
           L  F++M+ S+          ++   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+
Sbjct: 185 LETFVNMSGST-----ADDPQNVPLTVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVAS 239

Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           I+MAMGMMML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 240 ILMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 280


>gi|307945658|ref|ZP_07660994.1| flagellar biosynthetic protein FliP [Roseibium sp. TrichSKD4]
 gi|307771531|gb|EFO30756.1| flagellar biosynthetic protein FliP [Roseibium sp. TrichSKD4]
          Length = 231

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 106/229 (46%), Positives = 167/229 (72%), Gaps = 4/229 (1%)

Query: 17  VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
           ++A ++    +    D +++   V+   + T+LS+AP +LIMVT F R ++V S+LR+ +
Sbjct: 4   IWAANAQEITIGFGDDTTLTERAVQLLALLTVLSLAPSILIMVTSFTRIVVVLSLLRSAI 63

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G+ + PPN+V+ISLA+F+T ++M+PTL ++   G+QPL+++ I    A +R ++PF  FM
Sbjct: 64  GLQTAPPNMVMISLAMFLTAFIMAPTLQKAYNDGVQPLIDDDIEFNQAFERASDPFRQFM 123

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
            +  REKDL+LF +++     +T     + +E   L+P+FMISEL+R+FEIGFL+ LPFL
Sbjct: 124 LSQVREKDLALFQELSGRPAPDT----PEELELSTLVPAFMISELKRAFEIGFLLYLPFL 179

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IID+++A+++M+MGMMMLPP  ISLPFK+IFFVL+DGW+L+  +LVKSF
Sbjct: 180 IIDLVIASVLMSMGMMMLPPVVISLPFKLIFFVLVDGWNLVAGSLVKSF 228


>gi|254785480|ref|YP_003072909.1| flagellar biosynthesis protein FliP [Teredinibacter turnerae T7901]
 gi|237683712|gb|ACR10976.1| flagellar biosynthetic protein FliP [Teredinibacter turnerae T7901]
          Length = 283

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 91/209 (43%), Positives = 134/209 (64%), Gaps = 4/209 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           T  ++   + T L+  P +L+M+T F R IIVF+ILR  MG+   P N ++I LALF+T 
Sbjct: 77  TVTLQILMLMTALTFLPAILMMMTSFTRIIIVFAILRQAMGLQQSPSNQILIGLALFLTL 136

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           ++M+P LD      +QP MN Q++   A+     PF  FM  NTRE DL LF  +     
Sbjct: 137 FIMTPVLDEVNRTALQPYMNEQMSARQALDNAKLPFHAFMIANTRESDLDLFFRIGDI-- 194

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
               +     + + +L+P+F+ SEL+ +F+IGF+I +PFL+ID++VA+++MAMGMMML P
Sbjct: 195 --APVATPQDVPFTVLMPAFVTSELKTAFQIGFIIFIPFLVIDIVVASVLMAMGMMMLSP 252

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             ISLPFK++ FVL+DGW L++  L  SF
Sbjct: 253 LIISLPFKIMLFVLVDGWGLIMGTLAASF 281


>gi|224438396|ref|ZP_03659323.1| flagellar biosynthesis protein FliP [Helicobacter cinaedi CCUG
           18818]
          Length = 274

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 103/224 (45%), Positives = 149/224 (66%), Gaps = 4/224 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           S+   +  P + +     +    I T+L IAP L++++T F R +IVF+ LRT +G    
Sbjct: 54  SVDLSLTAPQEPTELVATLNIVLIITLLVIAPSLVLVMTSFTRIVIVFAFLRTALGTQQS 113

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PP  V++SLAL +TF++M P   +S E+GI+P    QI+   A +R   PF  FM  NTR
Sbjct: 114 PPTQVLVSLALVLTFFIMEPVATKSYEVGIKPYTEKQISYDEAFERAIVPFKDFMIKNTR 173

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           EKDL+LF  + +  +  T     D +   +LIP+FMISEL+ +F IGFL+ LPFL+IDM+
Sbjct: 174 EKDLALFFRIRNLENPQT----VDDVPLTVLIPAFMISELKTAFWIGFLLYLPFLVIDMV 229

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +++++MAMGMMMLPP  ISLPFK++ FVL+DGW+LL+ NLV+ F
Sbjct: 230 ISSVLMAMGMMMLPPVMISLPFKILVFVLVDGWNLLIGNLVQGF 273


>gi|292489152|ref|YP_003532039.1| flagellar biosynthetic protein FliP [Erwinia amylovora CFBP1430]
 gi|292900270|ref|YP_003539639.1| flagellar biosynthetic protein [Erwinia amylovora ATCC 49946]
 gi|291200118|emb|CBJ47244.1| flagellar biosynthetic protein [Erwinia amylovora ATCC 49946]
 gi|291554586|emb|CBA22219.1| Flagellar biosynthetic protein FliP precursor [Erwinia amylovora
           CFBP1430]
          Length = 247

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 95/244 (38%), Positives = 152/244 (62%), Gaps = 4/244 (1%)

Query: 2   IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
           +      +  + P +    ++    +  P      T  V+T  + + L+  P +L+M+T 
Sbjct: 6   VLRTLLLIAGMLPAVGALAANSDITLASPQGNGGWTLPVQTLVLLSSLTFLPAILLMMTG 65

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F R IIV  ++R  +G  + PPN V++ LALF+TFYVMSP  ++  E   QPL  ++IT 
Sbjct: 66  FTRIIIVLGLMRNALGTPTSPPNQVLVGLALFLTFYVMSPVFNQIYEQAWQPLQEDKITM 125

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
             A+++  +P   FM + TRE DL++F  MA    +  +    + +   IL+P+F+ SEL
Sbjct: 126 EVALEQGVKPLRAFMLDQTRENDLAMFAQMA----KAGEFKGPEEVPLGILVPAFVTSEL 181

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
           + +F+IGF I +PFLIID++VA+I+MA+GMMM+PP +I+LPFK++ FVL+DGW LL+ +L
Sbjct: 182 KTAFQIGFTIFIPFLIIDLVVASILMALGMMMVPPATIALPFKLMLFVLVDGWQLLMGSL 241

Query: 242 VKSF 245
            +SF
Sbjct: 242 AQSF 245


>gi|319781675|ref|YP_004141151.1| flagellar biosynthetic protein FliP [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167563|gb|ADV11101.1| flagellar biosynthetic protein FliP [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 243

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 131/245 (53%), Positives = 177/245 (72%), Gaps = 3/245 (1%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           M ++      +     + A   L       AD +   +I++ FG+ T+LS+AP LLIMVT
Sbjct: 1   MRKFLLATAMIAAATSIAAAQQLDLGGIGKADGTTVGYIIQMFGLLTVLSVAPGLLIMVT 60

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F RF+I FSILR G+G+ S P NL++ISL+LFMTFYVM+PT D++   G++PLM+NQIT
Sbjct: 61  SFTRFVIAFSILRAGIGLQSTPANLILISLSLFMTFYVMAPTFDQAWNTGVKPLMDNQIT 120

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
           +T A  ++++PF  FM +N R+KD  LF D+A    +       D ++ RIL+P+FMISE
Sbjct: 121 QTEAFDKISDPFRTFMLHNVRDKDFDLFADLARERGQT---VSRDTVDLRILVPAFMISE 177

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           +RR FEIGFLI+LPFL+ID+IVATI MAMGMMMLPPT +SLPFK++FFVLIDGW+LLV +
Sbjct: 178 IRRGFEIGFLIVLPFLVIDLIVATITMAMGMMMLPPTVVSLPFKILFFVLIDGWNLLVGS 237

Query: 241 LVKSF 245
           LV+SF
Sbjct: 238 LVRSF 242


>gi|134300235|ref|YP_001113731.1| flagellar biosynthesis protein FliP [Desulfotomaculum reducens
           MI-1]
 gi|134052935|gb|ABO50906.1| flagellar biosynthetic protein FliP [Desulfotomaculum reducens
           MI-1]
          Length = 257

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 97/250 (38%), Positives = 152/250 (60%), Gaps = 9/250 (3%)

Query: 1   MIRYCFFALFLVTPELVFAKS-----SLHDVMNIPADLSISTWIVRTFGIFTILSIAPIL 55
           +I      L  + P  VFA+      S++  +    +       V+     T+LS+ P  
Sbjct: 11  IIIVLTALLLFLIPNGVFAEPLIPIPSINLNVETAQEPQQVVDSVKLLIFLTLLSMVPAF 70

Query: 56  LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115
           L+M+T F R I+V S LR+ +G    PPN V+I LALF+T ++M+P      +  IQP +
Sbjct: 71  LMMLTSFTRIIVVLSFLRSALGTQQTPPNQVLIGLALFLTIFIMNPVYQDINKNSIQPYL 130

Query: 116 NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPS 175
            NQ+T   A  + A+P   FM   TREKDL LF+++A            + +   +L+P+
Sbjct: 131 ANQLTYEQATDQAAKPLRNFMVRQTREKDLGLFLNIAKMDKPK----NANEVPMSVLVPA 186

Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235
           F+ISEL+ +F+IGF++ +PFL+IDM+VA+ +M+MGM MLPP  ++LPFK++ FV++DGW 
Sbjct: 187 FVISELKTAFQIGFILFVPFLVIDMVVASTLMSMGMFMLPPVMVALPFKLLLFVMVDGWY 246

Query: 236 LLVENLVKSF 245
           L+V++LV+SF
Sbjct: 247 LVVKSLVESF 256


>gi|84502361|ref|ZP_01000497.1| flagellar biosynthesis protein [Oceanicola batsensis HTCC2597]
 gi|84389173|gb|EAQ01970.1| flagellar biosynthesis protein [Oceanicola batsensis HTCC2597]
          Length = 277

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 117/219 (53%), Positives = 162/219 (73%), Gaps = 5/219 (2%)

Query: 33  LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
            +++  +++     T+LSIAP LL+++T F RF+IVFS+LR+ +G+   PPN+V+ S+AL
Sbjct: 53  ATLAGRLIQLVAAMTVLSIAPGLLVIMTSFTRFVIVFSMLRSALGLNQTPPNMVLSSMAL 112

Query: 93  FMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
           FMTF+VM P  + + EMGI PL+NN ITE  A++R AEPF  FM  NTREKDL+LF D+A
Sbjct: 113 FMTFFVMQPVFEDAWEMGIDPLINNVITEEQALERTAEPFRTFMLANTREKDLALFQDIA 172

Query: 153 HSSHRNT-----DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
             S   T      + ++    +R L+P+FMISELRR+F IGFLI LPF+ ID+I+A+I+M
Sbjct: 173 ARSAGQTGADNLQVDEDGLPSWRSLVPAFMISELRRAFSIGFLIYLPFVAIDLIIASILM 232

Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           + GMMMLPP  ISLPFKVIFFVLIDGW +L  +L++S++
Sbjct: 233 SAGMMMLPPVLISLPFKVIFFVLIDGWYMLAGSLMESYL 271


>gi|83647846|ref|YP_436281.1| flagellar biosynthesis protein FliP [Hahella chejuensis KCTC 2396]
 gi|83635889|gb|ABC31856.1| flagellar biosynthetic protein FliP [Hahella chejuensis KCTC 2396]
          Length = 253

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 99/248 (39%), Positives = 157/248 (63%), Gaps = 7/248 (2%)

Query: 2   IRYCFFALFLVTPELVFAKSSLH----DVMNIPADLSISTWIVRTFGIFTILSIAPILLI 57
           +R  +  LFL+ P + ++          ++  P      +  ++   + T L+  P  L+
Sbjct: 7   LRLTYLILFLMLPGVAWSAQDAILPAVKLVTNPDGTQEYSVTLQILALMTALTFIPAFLM 66

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           M+T F R IIVFSILR  +G+   P N +++ +ALF+TF++M PT  ++ E+ +QP +  
Sbjct: 67  MMTSFTRIIIVFSILRQALGLQQAPSNQILVGIALFLTFFIMGPTFKQANEVALQPYLAE 126

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
           Q+T   A+ + +EPF  FM   TRE DL LF+ +A   ++  +    + + + IL+P+F+
Sbjct: 127 QLTAQEAVAKASEPFREFMLRQTRESDLGLFIRLAGDENKYAN---PEEVPFTILMPAFV 183

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
            SEL+ +F+IGFLI +PFLIIDM+VA+++MAMGMMML P  ISLPFK++ FVL+DGW+L+
Sbjct: 184 TSELKTAFQIGFLIFIPFLIIDMVVASVLMAMGMMMLSPIIISLPFKIMLFVLVDGWALI 243

Query: 238 VENLVKSF 245
           +  L  SF
Sbjct: 244 MGTLAASF 251


>gi|238794007|ref|ZP_04637625.1| Flagellar biosynthetic protein fliP [Yersinia intermedia ATCC
           29909]
 gi|238726639|gb|EEQ18175.1| Flagellar biosynthetic protein fliP [Yersinia intermedia ATCC
           29909]
          Length = 273

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 95/227 (41%), Positives = 146/227 (64%), Gaps = 6/227 (2%)

Query: 21  SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           + L  +++ P      +W   V+T    T LS  P  L+M+T F R IIV  +LR  +G 
Sbjct: 49  AQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLLRNALGT 108

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
            S PPN V++ LALF+TF++MSP  D+  +    P   ++I+   AI + A+P   FM  
Sbjct: 109 PSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAIDKGAQPLREFMLR 168

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
            TRE DL+L+  +A+       +   + +  RIL+P+++ SEL+ +F+IGF + +PFLII
Sbjct: 169 QTRESDLALYARLANLP----PLEGPEVVPMRILLPAYVTSELKTAFQIGFTVFIPFLII 224

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           D++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 225 DLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 271


>gi|332284032|ref|YP_004415943.1| flagellar biosynthesis protein FliP [Pusillimonas sp. T7-7]
 gi|330427985|gb|AEC19319.1| flagellar biosynthesis protein FliP [Pusillimonas sp. T7-7]
          Length = 257

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 100/235 (42%), Positives = 153/235 (65%), Gaps = 6/235 (2%)

Query: 13  TPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
            P +  A+++L  + +        TW   ++T  + T++S  P +L+M+T F R IIV  
Sbjct: 25  WPAMGLAQTTLPALTSAVNPDGSQTWSLSIQTLVLLTMMSFLPAMLMMMTGFTRIIIVLG 84

Query: 71  ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
           +LR  MG G+ PPN ++I LALF+TF+ MSP  D+      QPL N  I    A++R  +
Sbjct: 85  LLRNAMGTGASPPNSILIGLALFLTFFAMSPVFDQIYADAYQPLSNGVIAFEEALERGIK 144

Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
           P   FM + TRE DL++F +MA+      ++   + +  R+L+P+FM SEL+ +F+IGF 
Sbjct: 145 PLHSFMLHQTREADLTMFANMANV----AELQTAEEVPLRVLVPAFMASELKTAFQIGFT 200

Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           I +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL DGW LL+ +L +SF
Sbjct: 201 IFIPFLIIDLVVASVLMALGMMMVPPVTISLPFKLMLFVLADGWHLLLGSLARSF 255


>gi|148380606|ref|YP_001255147.1| flagellar biosynthetic protein FliP [Clostridium botulinum A str.
           ATCC 3502]
 gi|153933100|ref|YP_001384893.1| flagellar biosynthesis protein FliP [Clostridium botulinum A str.
           ATCC 19397]
 gi|153936309|ref|YP_001388362.1| flagellar biosynthesis protein FliP [Clostridium botulinum A str.
           Hall]
 gi|168180927|ref|ZP_02615591.1| flagellar biosynthetic protein FliP [Clostridium botulinum NCTC
           2916]
 gi|168182731|ref|ZP_02617395.1| flagellar biosynthetic protein FliP [Clostridium botulinum Bf]
 gi|226950061|ref|YP_002805152.1| flagellar biosynthetic protein FliP [Clostridium botulinum A2 str.
           Kyoto]
 gi|237796088|ref|YP_002863640.1| flagellar biosynthetic protein FliP [Clostridium botulinum Ba4 str.
           657]
 gi|148290090|emb|CAL84209.1| putative flagellar biosynthetic protein [Clostridium botulinum A
           str. ATCC 3502]
 gi|152929144|gb|ABS34644.1| flagellar biosynthetic protein FliP [Clostridium botulinum A str.
           ATCC 19397]
 gi|152932223|gb|ABS37722.1| flagellar biosynthetic protein FliP [Clostridium botulinum A str.
           Hall]
 gi|182668360|gb|EDT80339.1| flagellar biosynthetic protein FliP [Clostridium botulinum NCTC
           2916]
 gi|182674137|gb|EDT86098.1| flagellar biosynthetic protein FliP [Clostridium botulinum Bf]
 gi|226841463|gb|ACO84129.1| flagellar biosynthetic protein FliP [Clostridium botulinum A2 str.
           Kyoto]
 gi|229260888|gb|ACQ51921.1| flagellar biosynthetic protein FliP [Clostridium botulinum Ba4 str.
           657]
          Length = 258

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 95/234 (40%), Positives = 149/234 (63%), Gaps = 4/234 (1%)

Query: 12  VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
             P+       ++  ++   + +     ++   + T+L++ P  ++M+T F R I+VF  
Sbjct: 28  AAPQNTMPIPKINISVDNANNPTEYVDNIKLLIMLTVLTLLPSFIVMMTSFVRTIVVFGF 87

Query: 72  LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
           LR  MG    PPN V+I LALF+T ++M P         IQP M N+IT+  A++  A+P
Sbjct: 88  LRNAMGTQQSPPNQVMIGLALFLTLFIMQPVYSEINTKAIQPYMKNKITQEQAVEIGAKP 147

Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
              FM   TR+KDL LF+++A  + + T     D+    I++P+F+ISEL+ +F+IGFL+
Sbjct: 148 LRQFMLKQTRQKDLKLFVELAKPNFKVT----KDNAPLYIVVPAFIISELKTAFQIGFLL 203

Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            +PFLIID++VA+++M+MGM MLPP  ISLPFK++ FV++DGW LLV++LV SF
Sbjct: 204 FIPFLIIDLVVASVLMSMGMFMLPPVMISLPFKLLLFVMVDGWYLLVKSLVMSF 257


>gi|254258156|ref|ZP_04949210.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
           1710a]
 gi|254298637|ref|ZP_04966088.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
           406e]
 gi|76580117|gb|ABA49592.1| flagellar biosynthetic protein [Burkholderia pseudomallei 1710b]
 gi|157808588|gb|EDO85758.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
           406e]
 gi|254216845|gb|EET06229.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
           1710a]
          Length = 276

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 97/241 (40%), Positives = 146/241 (60%), Gaps = 6/241 (2%)

Query: 7   FALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPR 64
             + L         + L    + P     +T+   V+T  + T+LS  P +L+M+T F R
Sbjct: 39  ILIGLAPALACAQAAGLPAFNSAPGSNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTR 98

Query: 65  FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
            IIV S+LR  +G  S PPN V++ LALF+T +VMSP LDR+     +P     +    A
Sbjct: 99  IIIVLSLLRQAIGTASTPPNQVLVGLALFLTLFVMSPVLDRAYNDAYKPFSEGTLQMDQA 158

Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
           +QR   PF  FM   TRE DL+LF  ++    +   +   + +   +L+P+F+ SEL+  
Sbjct: 159 VQRGTAPFKAFMLKQTRETDLALFAKIS----KAAPMQGPEDVPLSLLVPAFVTSELKTG 214

Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           F+IGF I +PFLIIDM+VA+++M+MGMMM+ P ++SLPFK++ FVL+DGW LL+ +L +S
Sbjct: 215 FQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATVSLPFKLMLFVLVDGWQLLIGSLAQS 274

Query: 245 F 245
           F
Sbjct: 275 F 275


>gi|325525522|gb|EGD03321.1| flagellar biosynthesis protein FliP [Burkholderia sp. TJI49]
          Length = 229

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 96/232 (41%), Positives = 149/232 (64%), Gaps = 7/232 (3%)

Query: 17  VFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73
             A+++     N    P   +  +  V+T  + T+LS  P +++M+T F R IIV S+LR
Sbjct: 1   ACAQAAGLPAFNASPGPNGGTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTRIIIVLSLLR 60

Query: 74  TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133
             +G  + PPN V++ LALF+TF+VMSP LDR+   G +P  +  +    A+QR   PF 
Sbjct: 61  QALGTATTPPNQVLVGLALFLTFFVMSPVLDRAYTDGYKPFSDGSVPMEQAVQRGLAPFK 120

Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
            FM   TRE DL+LF  ++    +   +   + +   +L+P+F+ SEL+  F+IGF I +
Sbjct: 121 GFMLKQTRETDLALFAKIS----KAAPMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFI 176

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           PFLIIDM+VA+++M+MGMMM+ P+++SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 177 PFLIIDMVVASVLMSMGMMMVSPSTVSLPFKLMLFVLVDGWQLLIGSLAQSF 228


>gi|146312185|ref|YP_001177259.1| flagellar biosynthesis protein FliP [Enterobacter sp. 638]
 gi|145319061|gb|ABP61208.1| flagellar biosynthetic protein FliP [Enterobacter sp. 638]
          Length = 245

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 99/247 (40%), Positives = 156/247 (63%), Gaps = 9/247 (3%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           ++      L L  P +    + L  +++ P      +W   V+T    T L+  P +L+M
Sbjct: 4   LLSLTLAGLVLFAPAV---YAQLPGLISTPMAGGGQSWSLPVQTLVFITSLTFIPAILLM 60

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP   ++
Sbjct: 61  MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYADAYQPFSEDK 120

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   A+++ A+P   FM   TRE DL+LF  +A+       I   + +  RIL+P+++ 
Sbjct: 121 ISMQVALEKGAQPLREFMLRQTREADLALFARLANEG----PIQGPEAVPMRILLPAYVT 176

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV
Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKIMLFVLVDGWQLLV 236

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 237 GSLAQSF 243


>gi|300994267|ref|ZP_07180819.1| flagellar biosynthetic protein FliP [Escherichia coli MS 200-1]
 gi|300304932|gb|EFJ59452.1| flagellar biosynthetic protein FliP [Escherichia coli MS 200-1]
          Length = 245

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 99/239 (41%), Positives = 153/239 (64%), Gaps = 5/239 (2%)

Query: 7   FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
             L+L+TP L FA+        +P      +  V+T    T L+    +L+M+T F R I
Sbjct: 10  VLLWLITP-LAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIQAILLMMTSFTRII 68

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +I+   A++
Sbjct: 69  IVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALE 128

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           + A+P   FM   TRE DL LF  +A++      +   + +  RIL+P+++ SEL+ +F+
Sbjct: 129 KGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVTSELKTAFQ 184

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 185 IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243


>gi|296103629|ref|YP_003613775.1| Flagellar biosynthetic protein FliP [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058088|gb|ADF62826.1| Flagellar biosynthetic protein FliP [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 243

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 95/226 (42%), Positives = 146/226 (64%), Gaps = 4/226 (1%)

Query: 20  KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79
            ++    +  P+     T  V+T  + +  +  P +L+M+T F R IIV  ++R  +G  
Sbjct: 20  AANGDITLGQPSGEGGWTLPVQTLLLLSGFTFIPAILLMMTGFTRIIIVLGLMRNALGTP 79

Query: 80  SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139
           + PPN V++ L+LF+TF+VMSP   +  E   QPL  N+IT   A+    +P   FM + 
Sbjct: 80  TAPPNQVLVGLSLFLTFFVMSPVFSQIYEKAWQPLQENKITMEVALTEGVKPLRAFMLDQ 139

Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
           TRE DL++F  +A +     DI   + +   IL+P+F+ SEL+ +F+IGF I +PFLIID
Sbjct: 140 TRESDLAMFARIAKTP----DIASPEEVPLSILVPAFITSELKTAFQIGFTIFIPFLIID 195

Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++VA+I+MA+GMMM+PPT+I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 196 LVVASILMALGMMMVPPTTIALPFKLMLFVLVDGWQLLVGSLAQSF 241


>gi|39995531|ref|NP_951482.1| flagellar biosynthesis protein FliP [Geobacter sulfurreducens PCA]
 gi|39982294|gb|AAR33755.1| flagellar biosynthetic protein FliP [Geobacter sulfurreducens PCA]
 gi|298504532|gb|ADI83255.1| flagellar biogenesis protein FliP [Geobacter sulfurreducens KN400]
          Length = 255

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 101/212 (47%), Positives = 145/212 (68%), Gaps = 4/212 (1%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
              + +++ F + T+LS+AP LL+M T F R  +V S LR  +G    PPN +II+L+LF
Sbjct: 47  GDVSVVLQIFFLMTVLSLAPGLLMMTTSFTRIAVVLSFLRHAIGTQQAPPNQIIIALSLF 106

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           +TF+VM+P   +     IQP    QIT+  A++R   P   FM + TREKDL+LF++++ 
Sbjct: 107 LTFFVMAPVWQQVNTQAIQPYRAAQITQDEALKRAVAPMRKFMLSQTREKDLALFLNLSK 166

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
                T     D I    LIP+FMISELR +F+IGFLI +PFL++DM+VA+++M+MGMMM
Sbjct: 167 LPRPRT----ADDIPTLTLIPAFMISELRTAFQIGFLIFIPFLVVDMVVASVLMSMGMMM 222

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LPP  ISLPFK++ FVL+DGW L++ +L+KSF
Sbjct: 223 LPPVMISLPFKILLFVLVDGWGLVIGSLIKSF 254


>gi|298530624|ref|ZP_07018026.1| flagellar biosynthetic protein FliP [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509998|gb|EFI33902.1| flagellar biosynthetic protein FliP [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 236

 Score =  213 bits (542), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 95/240 (39%), Positives = 149/240 (62%), Gaps = 9/240 (3%)

Query: 12  VTPELVFAKSSLHDVMNIPADLSIS-----TWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
           + P L  A+  +   +++      +        +    + TILS+AP +++ +TCF R I
Sbjct: 1   MWPVLAQAQDPVLPSLSLQLSGEEAQPDNIAVALEILFLLTILSVAPAIVLTITCFTRII 60

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IVFS +R  +G   +PPN V+ +LA+F+T  +M+P      +  +QP +N +I    A+ 
Sbjct: 61  IVFSFIRHAIGTQQMPPNQVLAALAIFLTVAIMAPIGSEINQTALQPYLNEEIGHEEALS 120

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           R   P   FM  +TRE+DLS+F  +             + +   +LIP+FMISEL+ +F+
Sbjct: 121 RAEGPMREFMFKHTRERDLSVFYSITGMERPE----SREDVPTMLLIPAFMISELKTAFQ 176

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           IGFLI +PFLI+DM+VA+I+++MGMMMLPP  IS+PFKV+ F+++DGW+LLV +LV SF+
Sbjct: 177 IGFLIYIPFLILDMVVASILLSMGMMMLPPVMISMPFKVLLFIMVDGWNLLVGSLVNSFV 236


>gi|292487982|ref|YP_003530859.1| flagellar biosynthetic protein FliP [Erwinia amylovora CFBP1430]
 gi|292899202|ref|YP_003538571.1| flagellar biosynthetic protein [Erwinia amylovora ATCC 49946]
 gi|291199050|emb|CBJ46161.1| flagellar biosynthetic protein [Erwinia amylovora ATCC 49946]
 gi|291553406|emb|CBA20451.1| Flagellar biosynthetic protein FliP precursor [Erwinia amylovora
           CFBP1430]
          Length = 245

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 99/247 (40%), Positives = 157/247 (63%), Gaps = 9/247 (3%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           +I     ALF++ P +    + L  +++ P      +W   V+T    T L+  P +L++
Sbjct: 4   LIPLLLPALFMLAPNV---YAQLPGLISQPTANGGQSWSLPVQTLVFITSLTFLPAILLL 60

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIVF +LR  +G  S PPN V++ L+LF+TF++M P  D+      QP   ++
Sbjct: 61  MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLSLFLTFFIMGPVFDKIYTDAYQPFSEDK 120

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   AI + A+P   FM   TRE DL+LF  +A++      I   + +  RIL+P+++ 
Sbjct: 121 ISMQEAIDKGAQPLREFMLRQTREADLALFARLANTP----PIAGPEAVPMRILLPAYVT 176

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV
Sbjct: 177 SELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLV 236

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 237 SSLAQSF 243


>gi|56460298|ref|YP_155579.1| flagellar biosynthesis protein FliP [Idiomarina loihiensis L2TR]
 gi|56179308|gb|AAV82030.1| Flagellar biosynthesis protein FliP [Idiomarina loihiensis L2TR]
          Length = 248

 Score =  212 bits (541), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 94/246 (38%), Positives = 148/246 (60%), Gaps = 6/246 (2%)

Query: 2   IRYCFFALFLVTPELVFAKSSLHDVM--NIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           +  C  A+  + PE  FA   L  V     P      +  ++   I T L+  P ++IM+
Sbjct: 5   LLLCILAVLCLLPEQAFAWQDLTAVTVKTNPDGSEEYSVTLQILAIMTALTFIPAMVIMM 64

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R IIV +ILR  +G+   P N V++ +ALF++F++M+P L+   +  +QP +N +I
Sbjct: 65  TSFTRIIIVLAILRQAIGLQQSPSNQVLLGIALFLSFFIMTPVLNEINDKALQPYLNEEI 124

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
               A+ R   P   FM   TR  DL  F++++ +      + + + +   +LIPSF+ S
Sbjct: 125 QSMEAVDRAKAPIKAFMLAQTRLTDLETFVEISGTEG----VQEPEDVPMSVLIPSFITS 180

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P  +SLPFK++ FVL+DGWSL + 
Sbjct: 181 ELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWSLTMS 240

Query: 240 NLVKSF 245
            L  SF
Sbjct: 241 TLAGSF 246


>gi|332524236|ref|ZP_08400462.1| flagellar biosynthesis protein FliP [Rubrivivax benzoatilyticus
           JA2]
 gi|332107571|gb|EGJ08795.1| flagellar biosynthesis protein FliP [Rubrivivax benzoatilyticus
           JA2]
          Length = 252

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 96/226 (42%), Positives = 145/226 (64%), Gaps = 4/226 (1%)

Query: 21  SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
             L  ++   A  +  +  ++T   FT LS  P LL+++T F R +IV S+LR  +G  +
Sbjct: 30  GGLPLLVGQGAGGTSYSVPIQTLLFFTALSFIPALLLLMTGFTRIVIVLSLLRQALGTQA 89

Query: 81  VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
            PPN VII ++LF+TF+VMSPT DR  +   +P   NQI    A++R   P   FM   T
Sbjct: 90  APPNQVIIGMSLFLTFFVMSPTFDRVYDQAYKPFAENQIAFDEALKRGEVPMREFMLKQT 149

Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
           R+ D+ LF  +A          K++ +  R+L+P+F+ SEL+ +F+IGF+I +PFLIIDM
Sbjct: 150 RQSDVQLFAKLAKLPAE----VKSEDVPLRVLVPAFVTSELKSAFQIGFMIFIPFLIIDM 205

Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           IVA+++M++GMMML P  ++LPFK++ FVL DGW+LL+ +L  SF+
Sbjct: 206 IVASVLMSLGMMMLSPVLVALPFKLMLFVLADGWNLLLGSLAASFV 251


>gi|153953789|ref|YP_001394554.1| flagellar biosynthesis protein FliP [Clostridium kluyveri DSM 555]
 gi|219854405|ref|YP_002471527.1| hypothetical protein CKR_1062 [Clostridium kluyveri NBRC 12016]
 gi|146346670|gb|EDK33206.1| FliP [Clostridium kluyveri DSM 555]
 gi|219568129|dbj|BAH06113.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 258

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 88/193 (45%), Positives = 133/193 (68%), Gaps = 4/193 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +++M+T F R ++VF  LRT MG    PPN V++ LALF+T ++M P   +     IQ
Sbjct: 69  PSIIMMMTSFVRIVVVFGFLRTAMGTQQSPPNQVLVGLALFLTVFIMLPVYGKINSEAIQ 128

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P + N IT+  A++R A+P   FM   TR+KDL LF+D A  ++  T     D+    ++
Sbjct: 129 PYLQNGITQEQAVERGAKPLREFMLKQTRQKDLKLFVDEAKLNYEVT----KDNAPLYVV 184

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           IP+++ISEL+ +F+IGFL+ +PF+IID++V +++M+MGM MLPP  ISLPFK++ FV+ D
Sbjct: 185 IPAYIISELKTAFQIGFLLYIPFMIIDLVVGSVLMSMGMFMLPPVMISLPFKLLLFVMTD 244

Query: 233 GWSLLVENLVKSF 245
           GW LLV++L+ SF
Sbjct: 245 GWYLLVKSLIISF 257


>gi|311105950|ref|YP_003978803.1| flagellar biosynthetic protein FliP [Achromobacter xylosoxidans A8]
 gi|310760639|gb|ADP16088.1| flagellar biosynthetic protein FliP [Achromobacter xylosoxidans A8]
          Length = 263

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 101/235 (42%), Positives = 147/235 (62%), Gaps = 6/235 (2%)

Query: 13  TPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
            P  V A+++L  +   P      T+ +  +T  + T LS  P  L+M+T F R IIV  
Sbjct: 31  FPAGVVAQATLPALTATPGPNGSETYSLSMQTLLLMTSLSFLPAALLMMTGFTRIIIVLG 90

Query: 71  ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
           +LR+ MG    PPN V+I LALF+TFY MSP  D+      +PL    I    A++R A 
Sbjct: 91  LLRSAMGTAMSPPNHVLIGLALFLTFYTMSPVFDKIYTDAYKPLSEGSIQFEAAVERAAG 150

Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
           P   FM + TRE DLSLF ++A        +     +  RIL+P+F+ SEL+ +F+IGF 
Sbjct: 151 PLRTFMLHQTRENDLSLFANLAKQP----ALEDPSQVPLRILVPAFITSELKTAFQIGFT 206

Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           I +PFLIID++VA+++MA+GMMM+PP +++LPFK++ FVL DGW+LL+ +L +SF
Sbjct: 207 IFIPFLIIDLVVASVLMALGMMMVPPVTVALPFKLMLFVLADGWNLLMGSLAQSF 261


>gi|95929864|ref|ZP_01312605.1| flagellar biosynthetic protein FliP [Desulfuromonas acetoxidans DSM
           684]
 gi|95134160|gb|EAT15818.1| flagellar biosynthetic protein FliP [Desulfuromonas acetoxidans DSM
           684]
          Length = 246

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 102/247 (41%), Positives = 157/247 (63%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSIS--TWIVRTFGIFTILSIAPILLIM 58
           M+R  F    ++ P   +A       + +    + +  +  V+   + TILS+AP +L+M
Sbjct: 3   MLRLLFALGLILLPATGWAIDLPTITLGVENAATPNEVSMAVQILLVLTILSVAPAILLM 62

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
            T F R ++V S +R  MG   +PPN VI+ L+LF+TF++M+P      E  +QP ++ +
Sbjct: 63  TTAFVRVVVVLSFIRQAMGTQQMPPNQVIVGLSLFLTFFIMAPVYSVVNERAVQPYLSGE 122

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I +  A+     P   FM + TREKDL+L +D+A +   +T     D +    LIP+FM+
Sbjct: 123 IDQAQALTEAVNPVRDFMYSQTREKDLALLVDIAGNDRPDT----IDDVPTTTLIPAFML 178

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL R+F+IGF++ +PFL+IDM+VA+++M+MGMMMLPP  ISLPFK++ FVL+DGW L+V
Sbjct: 179 SELNRAFQIGFMVYVPFLVIDMVVASVLMSMGMMMLPPPIISLPFKLLLFVLVDGWGLVV 238

Query: 239 ENLVKSF 245
            +LVKSF
Sbjct: 239 GSLVKSF 245


>gi|78224289|ref|YP_386036.1| flagellar biosynthesis protein FliP [Geobacter metallireducens
           GS-15]
 gi|78195544|gb|ABB33311.1| Flagellar transport protein FliP [Geobacter metallireducens GS-15]
          Length = 250

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 103/224 (45%), Positives = 148/224 (66%), Gaps = 4/224 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           +L   +   +     + +++ F + T+LS+AP L++M T F R +IV S LR  +G    
Sbjct: 30  TLSIGVGKASKPGDVSTVLQIFFLMTVLSLAPGLMMMTTSFTRIVIVLSFLRNAIGTQQS 89

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PPN +I++L+LF+TF+VMSP   +     IQP    QIT+  A +R   P   FM + TR
Sbjct: 90  PPNQIIVALSLFLTFFVMSPVWQQVNTQAIQPYRAAQITQEEAFRRAQVPVRKFMFSQTR 149

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           EKDL+LF++++            D I    LIP+FMISELR +F+IGFLI +PFL+IDM+
Sbjct: 150 EKDLALFINLSKLQRPR----NADDIPTLTLIPAFMISELRTAFQIGFLIFIPFLVIDMV 205

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           VA+++M+MGMMMLPP  ISLPFK++ FVL+DGW L++ +LVKSF
Sbjct: 206 VASVLMSMGMMMLPPVMISLPFKILLFVLVDGWGLVIGSLVKSF 249


>gi|161523220|ref|YP_001578232.1| flagellar biosynthesis protein FliP [Burkholderia multivorans ATCC
           17616]
 gi|189348923|ref|YP_001944551.1| flagellar biosynthesis protein FliP [Burkholderia multivorans ATCC
           17616]
 gi|160340649|gb|ABX13735.1| flagellar biosynthetic protein FliP [Burkholderia multivorans ATCC
           17616]
 gi|189332945|dbj|BAG42015.1| flagellar biosynthetic protein [Burkholderia multivorans ATCC
           17616]
          Length = 253

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 94/216 (43%), Positives = 144/216 (66%), Gaps = 4/216 (1%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P   +  +  V+T  + T+LS  P +++M+T F R IIV S+LR  +G  + PPN V++ 
Sbjct: 41  PNGGTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTRIIIVLSLLRQALGTATTPPNQVLVG 100

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           LALF+TF+VMSP LDR+   G +P  +  +    A+QR   PF  FM   TRE DL+LF 
Sbjct: 101 LALFLTFFVMSPVLDRAYTDGYKPFSDGTLPMEQAVQRGVAPFKGFMLKQTRETDLALFA 160

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
            ++    +   +   + +   +L+P+F+ SEL+  F+IGF I +PFLIIDM+VA+++M+M
Sbjct: 161 KIS----KAAPMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSM 216

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMM+ P+++SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 217 GMMMVSPSTVSLPFKLMLFVLVDGWQLLIGSLAQSF 252


>gi|296133033|ref|YP_003640280.1| flagellar biosynthetic protein FliP [Thermincola sp. JR]
 gi|296031611|gb|ADG82379.1| flagellar biosynthetic protein FliP [Thermincola potens JR]
          Length = 262

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 93/234 (39%), Positives = 152/234 (64%), Gaps = 4/234 (1%)

Query: 12  VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
           V         ++   +N  ++    +  ++   + TILS+AP +LIM T F R ++V S 
Sbjct: 32  VFAAPAVPVPNVDININTSSNPQEVSKSLQILFLITILSLAPAILIMTTAFTRVVVVLSF 91

Query: 72  LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
           +R+ +   + PPN VII LALF+TF++M+PT  +  +  +QP ++ ++++  A+++   P
Sbjct: 92  VRSALSTHTTPPNQVIIGLALFLTFFIMAPTWSQVNKDALQPYLSGKLSQEQALKKAVTP 151

Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
              FM   TREKDL+LF+ MA+     T       +   +LIP+F ISEL+ +F+IGF+I
Sbjct: 152 VRDFMFKQTREKDLALFVKMANIKRPRTHA----DVPTYVLIPAFTISELKTAFQIGFMI 207

Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            +PF++IDM++A+ +M+MGM+MLPP  ISLPFK++ FVL+DGW+L+V +L+ SF
Sbjct: 208 YIPFIVIDMVIASSLMSMGMIMLPPMMISLPFKLLLFVLVDGWNLIVRSLIMSF 261


>gi|221201779|ref|ZP_03574816.1| flagellar biosynthetic protein FliP [Burkholderia multivorans
           CGD2M]
 gi|221207716|ref|ZP_03580724.1| flagellar biosynthetic protein FliP [Burkholderia multivorans CGD2]
 gi|221172562|gb|EEE05001.1| flagellar biosynthetic protein FliP [Burkholderia multivorans CGD2]
 gi|221178199|gb|EEE10609.1| flagellar biosynthetic protein FliP [Burkholderia multivorans
           CGD2M]
          Length = 253

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 94/216 (43%), Positives = 144/216 (66%), Gaps = 4/216 (1%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P   +  +  V+T  + T+LS  P +++M+T F R IIV S+LR  +G  + PPN V++ 
Sbjct: 41  PNGGTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTRIIIVLSLLRQALGTATTPPNQVLVG 100

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           LALF+TF+VMSP LDR+   G +P  +  +    A+QR   PF  FM   TRE DL+LF 
Sbjct: 101 LALFLTFFVMSPVLDRAYTDGYKPFSDGTLPMEQAVQRGVAPFKGFMLKQTRETDLALFA 160

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
            ++    +   +   + +   +L+P+F+ SEL+  F+IGF I +PFLIIDM+VA+++M+M
Sbjct: 161 KIS----KAAPMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSM 216

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMM+ P+++SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 217 GMMMVSPSTVSLPFKLMLFVLVDGWQLLIGSLAQSF 252


>gi|259907616|ref|YP_002647972.1| Flagellar biosynthetic protein FliP [Erwinia pyrifoliae Ep1/96]
 gi|224963238|emb|CAX54722.1| Flagellar biosynthetic protein FliP [Erwinia pyrifoliae Ep1/96]
 gi|283477458|emb|CAY73374.1| Flagellar biosynthetic protein FliP precursor [Erwinia pyrifoliae
           DSM 12163]
          Length = 247

 Score =  212 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 95/245 (38%), Positives = 154/245 (62%), Gaps = 5/245 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           ++R       +++     A +S    +  P      T  V+T  + + L+  P +L+M+T
Sbjct: 6   LLRALLLVAGMLSAVGALAANS-DITLASPQGNGGWTLPVQTLVLLSSLTFLPAVLLMMT 64

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R IIV  ++R  +G  + PPN V++ LALF+TFYVMSP  ++  +   QPL  ++IT
Sbjct: 65  GFTRIIIVLGLMRNALGTPTAPPNQVLVGLALFLTFYVMSPVFNQIYQQAWQPLQEDKIT 124

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A+++  +P   FM + TRE DL++F  +A    +  +    + +   IL+P+F+ SE
Sbjct: 125 MEVALEQGVKPLRAFMLDQTRENDLAMFAQIA----KAGEFKGPEEVPLGILVPAFVTSE 180

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +F+IGF I +PFLIID++VA+I+MA+GMMM+PP +I+LPFK++ FVL+DGW LL+ +
Sbjct: 181 LKTAFQIGFTIFIPFLIIDLVVASILMALGMMMVPPATIALPFKLMLFVLVDGWQLLMGS 240

Query: 241 LVKSF 245
           L +SF
Sbjct: 241 LAQSF 245


>gi|258514015|ref|YP_003190237.1| flagellar biosynthesis protein FliP [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257777720|gb|ACV61614.1| flagellar biosynthetic protein FliP [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 256

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 96/239 (40%), Positives = 149/239 (62%), Gaps = 8/239 (3%)

Query: 11  LVTPELVFAKSSLHDVMNI----PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
           ++ P L +A+      +N+      + +     ++   + TILS+ P +L+M+T F R +
Sbjct: 21  VLLPRLAWAEPIPIPNINLNVGQSENPAQVVDSIKLLVLLTILSLIPAILLMMTSFTRIV 80

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IV S LR  +G    PPN V+I LALF+T ++M P  +   E  ++P + NQIT+  A  
Sbjct: 81  IVLSFLRNALGTQQTPPNQVLIGLALFLTVFIMKPVYNDLNEQALKPYLANQITQEEAQN 140

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           R A P   FM   TRE DL+LF+ +A +          + +   ++IP+F+ISEL+ SF+
Sbjct: 141 RAAGPLKEFMLKQTRESDLALFIGVAKAQKP----QNRNDVPLHLVIPAFIISELKTSFQ 196

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +GFLI +PFL+ID +VA+ +M+MGM MLPP   SLPFK++ FV++DGW L+V++LV+SF
Sbjct: 197 MGFLIYIPFLVIDAVVASTLMSMGMFMLPPAMFSLPFKLLLFVMVDGWYLVVKSLVESF 255


>gi|238764402|ref|ZP_04625352.1| Flagellar biosynthetic protein fliP [Yersinia kristensenii ATCC
           33638]
 gi|238697428|gb|EEP90195.1| Flagellar biosynthetic protein fliP [Yersinia kristensenii ATCC
           33638]
          Length = 243

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 94/229 (41%), Positives = 147/229 (64%), Gaps = 6/229 (2%)

Query: 19  AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
           A + L  +++ P      +W   V+T    T LS  P  L+M+T F R IIV  +LR  +
Sbjct: 17  ALAQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLLRNAL 76

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G  S PPN V++ LALF+TF++MSP  D+  +    P   ++I+   A+ + ++P   FM
Sbjct: 77  GTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAMDKGSQPLREFM 136

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
              TRE DL+L+  +A+       +   + +  RIL+P+++ SEL+ +F+IGF + +PFL
Sbjct: 137 LRQTRESDLALYARLANLP----PLEGPEVVPMRILLPAYVTSELKTAFQIGFTVFIPFL 192

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IID++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 193 IIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 241


>gi|326791526|ref|YP_004309347.1| flagellar biosynthetic protein FliP [Clostridium lentocellum DSM
           5427]
 gi|326542290|gb|ADZ84149.1| flagellar biosynthetic protein FliP [Clostridium lentocellum DSM
           5427]
          Length = 261

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 99/245 (40%), Positives = 152/245 (62%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           +I +    L+  T        ++   +   +    ++  ++   I TI+S+AP +LIM+T
Sbjct: 16  IILFYVGCLYTDTQASTVQVPNITVNLGGESQAENTSASLQMIFIITIISLAPSILIMMT 75

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R II    +R+ +G  ++PPN +++ LALF+TF+VMSP   +     I PL   QIT
Sbjct: 76  SFLRIIIALHFVRSAIGTQTMPPNQILVGLALFLTFFVMSPVFMQIKTNAIDPLEKQQIT 135

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
           +  AI+R  +P   FM   TR++D++LFMD+AH      D      +   ++IP+F+ISE
Sbjct: 136 QEQAIERGIQPLKEFMLKQTRDEDITLFMDLAHLEPYTEDTDLVKEMPLHVIIPAFIISE 195

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           LR  F IGFL+ +PF+IIDM+VA  +M+MGMMMLPP  ISLPFKV+ F+L+DGW+L +  
Sbjct: 196 LRAGFIIGFLVYIPFIIIDMVVAATLMSMGMMMLPPAMISLPFKVLLFILVDGWNLFIGQ 255

Query: 241 LVKSF 245
           L+++F
Sbjct: 256 LIQTF 260


>gi|261340413|ref|ZP_05968271.1| flagellar biosynthetic protein FliP [Enterobacter cancerogenus ATCC
           35316]
 gi|288317505|gb|EFC56443.1| flagellar biosynthetic protein FliP [Enterobacter cancerogenus ATCC
           35316]
          Length = 245

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 98/247 (39%), Positives = 158/247 (63%), Gaps = 9/247 (3%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           ++      L L  P +    + L  +++ P      +W   V+T    T L+  P +L+M
Sbjct: 4   LLSLTLAGLGLFAPAV---YAQLPGLISTPMAGGGQSWSLPVQTLVFITSLTFIPAILLM 60

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP   ++
Sbjct: 61  MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYTDAYQPFSEDK 120

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   A+++ A+P   FM   TRE DL+LF  +A++     ++   + +  RIL+P+++ 
Sbjct: 121 ISMEVALEKGAQPLREFMLRQTREADLALFARLANTG----ELQGPEAVPMRILLPAYVT 176

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV
Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKIMLFVLVDGWQLLV 236

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 237 SSLAQSF 243


>gi|120613021|ref|YP_972699.1| flagellar biosynthesis protein FliP [Acidovorax citrulli AAC00-1]
 gi|120591485|gb|ABM34925.1| flagellar biosynthetic protein FliP [Acidovorax citrulli AAC00-1]
          Length = 262

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 98/240 (40%), Positives = 144/240 (60%), Gaps = 4/240 (1%)

Query: 7   FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
            AL            SL  ++   A  +  +  ++T   FT LS  P +L+M+T F R +
Sbjct: 26  MALVPSAWAQAAGGGSLPVLIGSGAGGTSYSVPIQTLLFFTALSFLPAVLLMMTGFTRIV 85

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IV S++R  +G  S PPN VII L+LF+TF+VM PT DR       P  NN IT   A++
Sbjct: 86  IVLSLIRQAIGTQSAPPNQVIIGLSLFLTFFVMGPTFDRVYADAYLPYSNNTITFEQAVE 145

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           R   P   FM   TR+ D +LF  +A      T     +    R+L+P+F+ SEL+ +F+
Sbjct: 146 RAEAPMRSFMLKQTRQSDFALFARLAKLPSGAT----AETAPMRVLVPAFVTSELKSAFQ 201

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           IGF+I +PFL+IDM+V++I+M++GMMML P  ++LPFK++ FVL DGW+LL+ +L  SF+
Sbjct: 202 IGFMIFIPFLVIDMVVSSILMSLGMMMLSPVLVALPFKLMLFVLADGWNLLLGSLAASFV 261


>gi|90021817|ref|YP_527644.1| flagellar biosynthesis protein FliP [Saccharophagus degradans 2-40]
 gi|89951417|gb|ABD81432.1| flagellar biosynthetic protein FliP [Saccharophagus degradans 2-40]
          Length = 280

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 92/220 (41%), Positives = 141/220 (64%), Gaps = 4/220 (1%)

Query: 26  VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
           V   P      +  ++   + T L+  P +LIM+T F R IIVFSILR  +G+   P N 
Sbjct: 63  VTTQPDGSQEYSITLQILFLMTALTFLPAILIMMTAFTRIIIVFSILRQALGLQQSPSNQ 122

Query: 86  VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145
           ++I L LF+TF++M+P +++  +  +QP +  QIT   A++   +P   FM  NTRE DL
Sbjct: 123 ILIGLTLFLTFFIMTPVIEKVNQNALQPYIAEQITAQQALEETKKPVRKFMLANTRESDL 182

Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
            LF  +A        +   + I + +L+PSF+ SEL+ +F+IGF++ +PFL+ID++VA++
Sbjct: 183 ELFFRIASL----EPVATPEEIPFSVLVPSFITSELKTAFQIGFILFIPFLVIDIVVASV 238

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +MAMGMMML P  ISLPFK++ FVL+DGW+L++  L  SF
Sbjct: 239 LMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLAASF 278


>gi|34498582|ref|NP_902797.1| flagellar biosynthesis protein FliP [Chromobacterium violaceum ATCC
           12472]
 gi|34104436|gb|AAQ60794.1| probable flagellar biosynthetic protein fliP [Chromobacterium
           violaceum ATCC 12472]
          Length = 250

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 95/237 (40%), Positives = 151/237 (63%), Gaps = 6/237 (2%)

Query: 11  LVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIV 68
           L++P L  A + L  + + PA      + +  +     T L+  P +++M+T F R +IV
Sbjct: 15  LLSPLLADAAAGLPLMTSTPAAGGGQNYSLSLQMLLFMTALTFIPAMMLMMTAFTRIVIV 74

Query: 69  FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128
            S+LR  +G    PPN VI+ LALF+T +VM PT D+       P  +++I+   A+   
Sbjct: 75  LSLLRQALGTTQSPPNQVIVGLALFLTLFVMGPTFDQVYAKAWVPFSDDKISFNQALDEG 134

Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188
           ++P   FM   TREKDL+ F++++ S          + +  + LIP+F +SEL+ +F+IG
Sbjct: 135 SKPMKAFMLRQTREKDLAFFIEISQSPKP----QSKEEVSMKTLIPAFAVSELKTAFQIG 190

Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           F+I +PF+IID++VA+I+MAMGMMM+ P +ISLPFK++ FVL+DGW+LL+ +LV+SF
Sbjct: 191 FMIFIPFMIIDLVVASILMAMGMMMVSPVTISLPFKMMLFVLVDGWTLLMGSLVQSF 247


>gi|121601713|ref|YP_989394.1| flagellar biosynthesis protein FliP [Bartonella bacilliformis
           KC583]
 gi|120613890|gb|ABM44491.1| flagellar biosynthetic protein FliP [Bartonella bacilliformis
           KC583]
          Length = 247

 Score =  212 bits (540), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 133/250 (53%), Positives = 181/250 (72%), Gaps = 8/250 (3%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPA-----DLSISTWIVRTFGIFTILSIAPIL 55
           M       L L  P+    ++       +       + S+S WIV+ FG+ T+LS+AP L
Sbjct: 1   MSSLIVLMLVLAIPDAFAQQTGAASPGGLAGLLPSVEGSVSGWIVQLFGLLTVLSVAPGL 60

Query: 56  LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115
           L+MVT F RF I FS+LR+G+G+ + PPNLV+ISLALFMTFYVM+PT + + E G+QPLM
Sbjct: 61  LMMVTSFTRFAIAFSLLRSGLGLQTTPPNLVMISLALFMTFYVMAPTFNAAWEQGVQPLM 120

Query: 116 NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPS 175
            N+ITE  AI ++++PF  FM +  REKDL LF+D++     +  +     I++RIL+P+
Sbjct: 121 KNEITEQQAIDKISQPFREFMISQVREKDLDLFVDLSD---PSFQVRTGADIDFRILVPA 177

Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235
           FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW+
Sbjct: 178 FMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWN 237

Query: 236 LLVENLVKSF 245
           LLV +L++SF
Sbjct: 238 LLVGSLIRSF 247


>gi|114570490|ref|YP_757170.1| flagellar biosynthesis protein FliP [Maricaulis maris MCS10]
 gi|114340952|gb|ABI66232.1| flagellar biosynthetic protein FliP [Maricaulis maris MCS10]
          Length = 251

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 110/243 (45%), Positives = 164/243 (67%), Gaps = 5/243 (2%)

Query: 4   YCFFALFLVTPELV-FAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCF 62
           +CF    L    L+ F   +    ++   + +++  +++   + T+LS+AP ++IM T F
Sbjct: 9   FCFSLFLLGVITLIGFQADAQTVTIDAGQEGALTERVLQLMALLTVLSLAPSIIIMTTSF 68

Query: 63  PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122
            R I+V S+LRTG+G+   PPN V++SLA+FMT ++M+P   +S + GIQPL+N +I  T
Sbjct: 69  VRIIVVLSLLRTGLGLQQSPPNAVLVSLAIFMTGFIMAPVFTQSYDEGIQPLLNEEIELT 128

Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182
            A      P   FM ++ RE DL+LF+DM+  +         +   + I+ P+FMISELR
Sbjct: 129 EAFDLSTAPLKTFMLSHVREDDLALFIDMSQEAVPE----SPEATSFWIVAPAFMISELR 184

Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
           R+FEIGFL+ +PFLIID++VA+I+M+MGMMMLPP  ISLPFK+IFFVL+DGW L+V +LV
Sbjct: 185 RAFEIGFLLFIPFLIIDLVVASILMSMGMMMLPPIVISLPFKLIFFVLVDGWRLVVGSLV 244

Query: 243 KSF 245
           +SF
Sbjct: 245 QSF 247


>gi|328545499|ref|YP_004305608.1| flagellar transport protein FliP [polymorphum gilvum SL003B-26A1]
 gi|326415240|gb|ADZ72303.1| Flagellar transport protein FliP [Polymorphum gilvum SL003B-26A1]
          Length = 246

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 127/215 (59%), Positives = 159/215 (73%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
            + S S  IV+   + T+LS+AP +LIMVT F RF +  S LR+G+G+ + P NL++ISL
Sbjct: 31  GEGSASGRIVQIIALLTVLSVAPGILIMVTSFTRFAVALSFLRSGIGLQTTPGNLILISL 90

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           ALFMTFYVM+PT DR+   G+ PLMNN+I E  A  R+ EPF  FM +  RE+DL LF D
Sbjct: 91  ALFMTFYVMAPTFDRAWTQGVVPLMNNEIDEQEAYGRITEPFREFMLSQVREQDLVLFDD 150

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           +A     +T       +E R+LIP+FMISELRR FEIGFLI LPFL+IDMIVATI M+MG
Sbjct: 151 LAAGRLTDTPAASPREVELRVLIPAFMISELRRGFEIGFLIALPFLVIDMIVATITMSMG 210

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMMLPPT ISLPFK +FF+LIDGW+LLV +LV+SF
Sbjct: 211 MMMLPPTVISLPFKALFFILIDGWNLLVGSLVRSF 245


>gi|238796941|ref|ZP_04640445.1| Flagellar biosynthetic protein fliP [Yersinia mollaretii ATCC
           43969]
 gi|238719201|gb|EEQ11013.1| Flagellar biosynthetic protein fliP [Yersinia mollaretii ATCC
           43969]
          Length = 245

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 100/242 (41%), Positives = 152/242 (62%), Gaps = 4/242 (1%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
                +  + P      ++   +M   AD    +  V+T  + T L+  P +L+M+T F 
Sbjct: 6   LTLLMIGFLLPVHSVWAANSDVMMARSADGENWSLPVQTLVLLTSLTFLPAILLMMTGFT 65

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
           R IIV  +LR  +G  S PPN V++ LALF+TFYVMSP  ++  +   QPL  ++I+  T
Sbjct: 66  RIIIVLGLLRNALGTPSTPPNQVLLGLALFLTFYVMSPVFNQIYKEAWQPLSEDKISMET 125

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
           A++R  +P   FM   TRE DL+L+  MA    +  +    D +  RIL+P+F+ SEL+ 
Sbjct: 126 ALERGVQPLRTFMLEQTRETDLALYTRMA----KEENFQSQDDVPLRILLPAFVTSELKT 181

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
            F+IGF + +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +
Sbjct: 182 GFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLMGSLAQ 241

Query: 244 SF 245
           SF
Sbjct: 242 SF 243


>gi|295098284|emb|CBK87374.1| flagellar biosynthetic protein FliP [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 245

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 99/247 (40%), Positives = 157/247 (63%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           M R  F  L  +        + L  +++ P      +W   V+T    T L+  P +L+M
Sbjct: 1   MRRLLFLTLTGLGLFAPSVYAQLPGLVSTPLANGGQSWSLSVQTLVFITSLTFIPAILLM 60

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP   ++
Sbjct: 61  MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYTEAYQPFSEDK 120

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   A+++ A+P   FM   TRE DL+LF  +A++     ++   + +  RIL+P+++ 
Sbjct: 121 ISMQVALEKGAQPLREFMLRQTREADLALFARLANTG----ELQGPEAVPMRILLPAYVT 176

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV
Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKIMLFVLVDGWQLLV 236

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 237 SSLAQSF 243


>gi|319898643|ref|YP_004158736.1| flagellar biosynthetic protein fliP [Bartonella clarridgeiae 73]
 gi|319402607|emb|CBI76152.1| Flagellar biosynthetic protein fliP [Bartonella clarridgeiae 73]
          Length = 250

 Score =  212 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 134/247 (54%), Positives = 185/247 (74%), Gaps = 9/247 (3%)

Query: 5   CFFALFLVTPELVFAKSSLHDVMNI------PADLSISTWIVRTFGIFTILSIAPILLIM 58
               + L+T    FA+    + +N          +SIS  IV+ FG+ T+LS+AP LLIM
Sbjct: 7   LVLMILLLTTTGAFAQRVGTENVNSLAGLFFSPGVSISGRIVQLFGLLTVLSVAPGLLIM 66

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           VT F RF I FS+LRTG+G+ + P NLV+ISLALFM+FYVM+PT + + E G+QPL+NN+
Sbjct: 67  VTSFTRFAIAFSLLRTGLGLQTTPSNLVMISLALFMSFYVMAPTFNTAWEQGVQPLVNNK 126

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+E  AI+++++PF  FM +  REKDL LF+D++ SS +   +     +++R+LIP+FMI
Sbjct: 127 ISEQQAIEKISQPFREFMISQVREKDLDLFVDLSDSSLQ---VKTGADVDFRVLIPAFMI 183

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW+LLV
Sbjct: 184 SELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNLLV 243

Query: 239 ENLVKSF 245
            +L++SF
Sbjct: 244 GSLIRSF 250


>gi|86146126|ref|ZP_01064452.1| flagellar biosynthesis protein [Vibrio sp. MED222]
 gi|218708833|ref|YP_002416454.1| flagellar biosynthesis protein FliP [Vibrio splendidus LGP32]
 gi|85836073|gb|EAQ54205.1| flagellar biosynthesis protein [Vibrio sp. MED222]
 gi|218321852|emb|CAV17828.1| Flagellar biosynthetic protein fliP [Vibrio splendidus LGP32]
          Length = 309

 Score =  212 bits (539), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 87/219 (39%), Positives = 136/219 (62%), Gaps = 5/219 (2%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
                     +  ++   + T+L   P ++I++T F R ++V SILR  MG+   P N V
Sbjct: 94  TTNANGGEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 153

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           II +A+F+TF++MSP + +  E  +QP +N QI+   A      P   FM   TR KDL 
Sbjct: 154 IIGIAIFLTFFIMSPVISQVNEQAVQPYLNEQISARQAFDVAQGPIKSFMLKQTRIKDLE 213

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
            F++++        +T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++
Sbjct: 214 TFVEISG-----AQVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 268

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MAMGMMML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 269 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 307


>gi|85060034|ref|YP_455736.1| flagellar biosynthesis protein FliP [Sodalis glossinidius str.
           'morsitans']
 gi|84780554|dbj|BAE75331.1| flagellar biosynthesis protein FliP [Sodalis glossinidius str.
           'morsitans']
          Length = 253

 Score =  212 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 101/239 (42%), Positives = 150/239 (62%), Gaps = 4/239 (1%)

Query: 7   FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
            AL L+     FA+        +P      +  V+T    T L+  P  L+M+T F R I
Sbjct: 17  AALMLLFAPACFAQLPSIISQPLPGGSQNWSLPVQTLVFLTSLTFIPAALLMMTSFTRII 76

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IV  +LR+ +G  S PPN V++ LALF+TF+VMSP LD        PL  N+I+  TA++
Sbjct: 77  IVLGLLRSAIGTPSAPPNQVLLGLALFLTFFVMSPVLDSIYTEAYLPLSENKISMQTALE 136

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           R ++P   FM   TRE DL LF  +A+       +   + +  RIL+P+++ SEL+ +F+
Sbjct: 137 RGSQPLRAFMLRQTREADLGLFARLANVP----PLEGPEAVPMRILLPAYVTSELKTAFQ 192

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGF + +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 193 IGFTLFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLSSLAQSF 251


>gi|253702494|ref|YP_003023683.1| flagellar biosynthesis protein FliP [Geobacter sp. M21]
 gi|251777344|gb|ACT19925.1| flagellar biosynthetic protein FliP [Geobacter sp. M21]
          Length = 247

 Score =  212 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 92/209 (44%), Positives = 144/209 (68%), Gaps = 4/209 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           + +++ F + T++S+AP LL+M T F R ++V S LR+ +G    P N ++I L+LF+TF
Sbjct: 42  SVVLQIFFLMTVISLAPSLLMMTTSFTRIVVVLSFLRSALGTQQAPSNQIVIGLSLFLTF 101

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           ++M+P   +     +QP   +QIT+  A++R   P   FM +  REKDL+LF++++    
Sbjct: 102 FIMAPVWQQVNANALQPYRASQITQEEAVKRGVAPLRKFMLSQVREKDLALFINLSKLPR 161

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
                   D I    LIP++M+SEL+ +F+IGFLI +PFL++DM+VA+++M+MGMMMLPP
Sbjct: 162 PK----NADDIPTLTLIPAYMVSELKTAFQIGFLIFIPFLVLDMVVASVLMSMGMMMLPP 217

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             ISLPFK++ FVL+DGW L++ +LVKSF
Sbjct: 218 VMISLPFKILLFVLVDGWGLVIGSLVKSF 246


>gi|220932509|ref|YP_002509417.1| flagellar biosynthetic protein FliP [Halothermothrix orenii H 168]
 gi|219993819|gb|ACL70422.1| flagellar biosynthetic protein FliP [Halothermothrix orenii H 168]
          Length = 254

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 101/218 (46%), Positives = 145/218 (66%), Gaps = 4/218 (1%)

Query: 28  NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87
           + PA+       +R   + T+LS+AP LL+MVT F R I+V  ++R  +    +PPN V+
Sbjct: 40  SNPAEGEDLVLSLRILLLLTVLSLAPALLVMVTSFTRVIVVLGLIRQALATRRMPPNQVL 99

Query: 88  ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147
           I LALF+T ++M+P      E  +QP +NN+IT   A  R  +P   FM   TREKDL+L
Sbjct: 100 IGLALFLTVFIMAPVWQDINEQALQPYLNNEITTQQAYDRGIKPIRDFMFKQTREKDLAL 159

Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
           F++M               I   +LIP+F+ISEL+ +F+IGFLI LPFL+IDM+VA+I+M
Sbjct: 160 FVNMTGIERPENRA----DIPTYVLIPAFVISELKTAFQIGFLIYLPFLMIDMVVASILM 215

Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +MGM+MLPP  ISLPFK++ F+L+DGW L++E+LVK+F
Sbjct: 216 SMGMLMLPPIIISLPFKLLLFILVDGWYLVIESLVKTF 253


>gi|284159406|ref|YP_440590.3| flagellar biosynthesis protein FliP [Burkholderia thailandensis
           E264]
 gi|83653869|gb|ABC37932.1| flagellar biosynthetic protein [Burkholderia thailandensis E264]
          Length = 276

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 93/216 (43%), Positives = 140/216 (64%), Gaps = 4/216 (1%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P   +  +  V+T  + T+LS  P +L+M+T F R IIV S+LR  +G  S PPN V++ 
Sbjct: 64  PNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQAIGTASTPPNQVLVG 123

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           LALF+T +VMSP LD++     +P     +    A+QR   PF  FM   TRE DL+LF 
Sbjct: 124 LALFLTLFVMSPVLDKAYTDAYKPFSEGTLQMDQAVQRGTAPFKTFMLKQTRETDLALFA 183

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
            ++    +   +   + +   +L+P+F+ SEL+  F+IGF I +PFLIIDM+VA+++M+M
Sbjct: 184 KIS----KAAPMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSM 239

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMM+ P ++SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 240 GMMMVSPATVSLPFKLMLFVLVDGWQLLIGSLAQSF 275


>gi|188579766|ref|YP_001923211.1| flagellar biosynthetic protein FliP [Methylobacterium populi BJ001]
 gi|179343264|gb|ACB78676.1| flagellar biosynthetic protein FliP [Methylobacterium populi BJ001]
          Length = 253

 Score =  211 bits (538), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 101/215 (46%), Positives = 152/215 (70%), Gaps = 4/215 (1%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
                +   ++   + T+L++AP +L+M T F R ++V SILR+ +G  + PPN V++SL
Sbjct: 41  GAGGTTERALQLVALITVLALAPSVLVMATSFTRIVVVLSILRSALGTQTAPPNTVMVSL 100

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           ALF+T +VM+PT   +   G++PL+  QI+++ A +R + PF  FM  N REKDL LF+D
Sbjct: 101 ALFLTAFVMAPTAREAYRAGVEPLVAGQISQSQAFERASAPFKTFMLRNVREKDLKLFLD 160

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           MA            + I   I+ P+FMISELRR+FEIGFL+ +PFLIID++VA+++MAMG
Sbjct: 161 MARQPAP----AGPEAIGLEIVTPAFMISELRRAFEIGFLLFIPFLIIDLVVASVLMAMG 216

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMMLPP +++LPFK+IFFVL+DGW+L+  +L++S+
Sbjct: 217 MMMLPPATVALPFKLIFFVLVDGWTLVAGSLIQSY 251


>gi|312884901|ref|ZP_07744591.1| flagellar biosynthesis protein FliP [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367378|gb|EFP94940.1| flagellar biosynthesis protein FliP [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 290

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 92/219 (42%), Positives = 138/219 (63%), Gaps = 5/219 (2%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
              P      T  ++   + T+L   P ++I++T F R ++V SILR  MG+   P N V
Sbjct: 75  TTNPDGSEDYTINLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 134

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           I+ +A+F+TF++MSP L++  E  IQP +N QIT   A      P   FM   TR KDL 
Sbjct: 135 IVGIAIFLTFFIMSPVLNKINEDAIQPYINEQITARKAFDLAQIPMRDFMLKQTRVKDLE 194

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
            F++++ S+      T    +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++
Sbjct: 195 TFVNISGST-----ATATSDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 249

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MAMGMMML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 250 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 288


>gi|148976423|ref|ZP_01813129.1| flagellar biosynthesis protein P [Vibrionales bacterium SWAT-3]
 gi|145964246|gb|EDK29502.1| flagellar biosynthesis protein P [Vibrionales bacterium SWAT-3]
          Length = 309

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 89/219 (40%), Positives = 139/219 (63%), Gaps = 5/219 (2%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
                     +  ++   + T+L   P ++I++T F R ++V SILR  MG+   P N V
Sbjct: 94  TTNANGGEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 153

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           II +A+F+TF++MSP +++  E  +QP +N QIT   A      P   FM   TR KDL 
Sbjct: 154 IIGIAIFLTFFIMSPVINQVNEQAVQPYLNEQITARQAFDVAQGPIKSFMLKQTRIKDLE 213

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
            F++++ S     ++T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++
Sbjct: 214 TFVEISGS-----EVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 268

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MAMGMMML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 269 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 307


>gi|317492418|ref|ZP_07950847.1| flagellar biosynthetic protein FliP [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316919757|gb|EFV41087.1| flagellar biosynthetic protein FliP [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 248

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 96/224 (42%), Positives = 145/224 (64%), Gaps = 6/224 (2%)

Query: 24  HDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
             +++ P       W   V+T    T L+  P  L+M+T F R IIV  +LR+ +G  S 
Sbjct: 27  PGIVSQPLANGGQNWSLPVQTLVFLTSLTFLPAALLMMTSFTRIIIVLGLLRSALGTPSA 86

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PPN V++ LALF+TF+VMSP  D+  +   QP   ++IT   A+ R A+P   FM   TR
Sbjct: 87  PPNQVMLGLALFLTFFVMSPVFDKIYQDAYQPFSQDKITMDVAMDRGAQPLREFMLRQTR 146

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           E DL+L+  +A+       +   + +  RIL+P+++ SEL+ +F+IGF I +PFLIID++
Sbjct: 147 ETDLALYAKLANLPQ----MAGPEDVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLV 202

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 203 VASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 246


>gi|167585022|ref|ZP_02377410.1| flagellar biosynthesis protein FliP [Burkholderia ubonensis Bu]
          Length = 253

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 94/216 (43%), Positives = 144/216 (66%), Gaps = 4/216 (1%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P   +  +  V+T  + T+LS  P +L+M+T F R IIV S+LR  +G  S PPN V++ 
Sbjct: 41  PNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQALGTSSTPPNQVLVG 100

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           LA+F+TF+VMSP LDR+   G +P  +  +    A+QR   PF  FM   TRE DL+LF 
Sbjct: 101 LAMFLTFFVMSPVLDRAYNDGYKPFSDGSVPMEQAVQRGVAPFKGFMLKQTRETDLALFA 160

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
            ++    +   +   + +   +L+P+F+ SEL+  F+IGF I +PFLIIDM+VA+++M+M
Sbjct: 161 KIS----KAAPMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSM 216

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMM+ P+++SLPFK++ FV++DGW LL+ +L +SF
Sbjct: 217 GMMMVSPSTVSLPFKLMLFVVVDGWQLLLGSLAQSF 252


>gi|220925383|ref|YP_002500685.1| flagellar biosynthetic protein FliP [Methylobacterium nodulans ORS
           2060]
 gi|219949990|gb|ACL60382.1| flagellar biosynthetic protein FliP [Methylobacterium nodulans ORS
           2060]
          Length = 251

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 106/243 (43%), Positives = 161/243 (66%), Gaps = 4/243 (1%)

Query: 3   RYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCF 62
           R   +   LV         +    +++     ++   ++   + T+L++AP +L+M T F
Sbjct: 11  RRAVWLAGLVLVASASGALAQSVTVDLGPSGGVTERALQLVALITVLALAPSVLVMATSF 70

Query: 63  PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122
            R ++V SILR+ +G  + PPN VI+SLALF+T +VM+PT   +   GI+PL+  QI ++
Sbjct: 71  TRIVVVLSILRSALGTQTAPPNAVIVSLALFLTAFVMAPTARDAYRAGIEPLVAGQIQQS 130

Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182
            A +R A PF  FM    REKDL LF+D+A +    T     + +   IL P+FMISELR
Sbjct: 131 QAFERAAAPFKAFMLRTVREKDLQLFLDLAKAPRPAT----PEAVGLEILTPAFMISELR 186

Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
           R+FEIGFL+ +PFLIID++VA+I+M++GMMMLPP +++LPFK+IFFVL+DGW+L+  +LV
Sbjct: 187 RAFEIGFLLFIPFLIIDLVVASILMSVGMMMLPPATVALPFKLIFFVLVDGWTLVAGSLV 246

Query: 243 KSF 245
           +S+
Sbjct: 247 QSY 249


>gi|222084871|ref|YP_002543400.1| flagellar biosynthesis transmembrane protein [Agrobacterium
           radiobacter K84]
 gi|221722319|gb|ACM25475.1| flagellar biosynthesis transmembrane protein [Agrobacterium
           radiobacter K84]
          Length = 252

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 147/249 (59%), Positives = 196/249 (78%), Gaps = 6/249 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSS----LHDVMNIPADLSISTWIVRTFGIFTILSIAPILL 56
           ++        +++PEL  A+        D++N P + S++ WI+RTFG+ TILSIAP +L
Sbjct: 5   LLILSTLVFAILSPELAMAQQLSQQIPTDLLNTPVNGSVAAWIIRTFGLLTILSIAPGIL 64

Query: 57  IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
           IMVT FPRFII FSILR+GMG+ + P N++++SLALFMTFYVMSPT D++ + G QPL+ 
Sbjct: 65  IMVTSFPRFIIAFSILRSGMGLATTPSNMILLSLALFMTFYVMSPTFDQAWKDGAQPLLA 124

Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
           NQI+E  A+ R+AEPF  FM NNTR+KD+ LF+D+A    R   +  ++ I+YR+LIP+F
Sbjct: 125 NQISEADAVMRIAEPFRTFMANNTRDKDIKLFVDLAQ--ERGQTVVIDNKIDYRVLIPAF 182

Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
           MISE+RR FEIGFL++LPFL+ID+IV+TIVMAMGMMMLPPTSISLPFK++FFVLIDGW+L
Sbjct: 183 MISEIRRGFEIGFLVVLPFLVIDLIVSTIVMAMGMMMLPPTSISLPFKILFFVLIDGWNL 242

Query: 237 LVENLVKSF 245
           LV +LV+SF
Sbjct: 243 LVGSLVRSF 251


>gi|222053616|ref|YP_002535978.1| flagellar biosynthetic protein FliP [Geobacter sp. FRC-32]
 gi|221562905|gb|ACM18877.1| flagellar biosynthetic protein FliP [Geobacter sp. FRC-32]
          Length = 251

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 97/249 (38%), Positives = 153/249 (61%), Gaps = 8/249 (3%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPAD----LSISTWIVRTFGIFTILSIAPILL 56
           +++      FL+T    FA+      +++             +++ F + T+LS+AP LL
Sbjct: 6   ILKPLLVIAFLLTAASAFAEPVALPTVSVGMGKVSKPGDVAVVLQIFFLMTVLSLAPGLL 65

Query: 57  IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
           +M T F R ++V S LR  +G    P N +II L+LF+TF++M+P   +     +QP   
Sbjct: 66  MMTTSFTRIVVVLSFLRNALGTQQAPSNQIIIGLSLFLTFFIMAPVWQQINVQALQPYRA 125

Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
             IT+  A++R   P   FM +  REKDL+LF++++            D I    +IP++
Sbjct: 126 QTITQDEALKRAVAPVRKFMLSQVREKDLALFINLSKLPRPK----NADDIPTMTIIPAY 181

Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
           MISEL+ +F+IGFL+ +PFL++DM+VA+++M+MGMMMLPP  ISLPFK++ FVL+DGW L
Sbjct: 182 MISELKTAFQIGFLVYIPFLVLDMVVASVLMSMGMMMLPPVMISLPFKILLFVLVDGWGL 241

Query: 237 LVENLVKSF 245
           ++ +LVKSF
Sbjct: 242 IIGSLVKSF 250


>gi|160896097|ref|YP_001561679.1| flagellar biosynthesis protein FliP [Delftia acidovorans SPH-1]
 gi|160361681|gb|ABX33294.1| flagellar biosynthetic protein FliP [Delftia acidovorans SPH-1]
          Length = 261

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 95/234 (40%), Positives = 145/234 (61%), Gaps = 4/234 (1%)

Query: 12  VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
           +      A +SL  V+   +  +  +  ++T   FT LS  P +L+M+T F R +IV S+
Sbjct: 30  LASWAQGAPASLPLVIGQGSGGTSFSVPIQTLLFFTALSFLPAILLMMTGFTRIVIVLSL 89

Query: 72  LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
           +R  +G  S PPN VII L+LF+T +VM PTLDR  +    P   N +T   AI++   P
Sbjct: 90  MRQALGTQSAPPNQVIIGLSLFLTLFVMGPTLDRVYQEAYVPYTTNAVTFEQAIEKAEAP 149

Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
              FM   TR+ D +LF  +A      T    ++    R+L+P+F+ SEL+ +F+IGF+I
Sbjct: 150 MRDFMLKQTRQSDFALFARLAKLDAGVT----SETAPLRVLVPAFVTSELKTAFQIGFMI 205

Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            +PFL+IDM+V++I+M++GMMML P  ++LPFK++ FVL DGW+LL+ +L  SF
Sbjct: 206 FIPFLVIDMVVSSILMSLGMMMLSPVLVALPFKLMLFVLADGWNLLIGSLAASF 259


>gi|27365290|ref|NP_760818.1| flagellar biosynthesis protein FliP [Vibrio vulnificus CMCP6]
 gi|37680655|ref|NP_935264.1| flagellar biosynthesis protein FliP [Vibrio vulnificus YJ016]
 gi|320155674|ref|YP_004188053.1| flagellar biosynthesis protein FliP [Vibrio vulnificus MO6-24/O]
 gi|27361437|gb|AAO10345.1| flagellar biosynthetic protein FliP [Vibrio vulnificus CMCP6]
 gi|37199404|dbj|BAC95235.1| flagellar biosynthesis pathway, component FliP [Vibrio vulnificus
           YJ016]
 gi|319930986|gb|ADV85850.1| flagellar biosynthesis protein FliP [Vibrio vulnificus MO6-24/O]
          Length = 289

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 90/219 (41%), Positives = 136/219 (62%), Gaps = 5/219 (2%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
              P      +  ++   + T+L   P ++I++T F R ++V SILR  MG+   P N V
Sbjct: 74  TTNPDGSEDYSVTLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 133

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           II +ALF+TF++MSP ++   E  +QP +N Q+T   A      P   FM   TR KDL 
Sbjct: 134 IIGIALFLTFFIMSPVINEVNEQAVQPYLNEQLTAREAFDAAQGPMKAFMLKQTRVKDLE 193

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
            F++M+         T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++
Sbjct: 194 TFVNMSG-----EQATNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 248

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MAMGMMML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 249 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287


>gi|260767696|ref|ZP_05876631.1| flagellar biosynthesis protein FliP [Vibrio furnissii CIP 102972]
 gi|260617205|gb|EEX42389.1| flagellar biosynthesis protein FliP [Vibrio furnissii CIP 102972]
 gi|315179472|gb|ADT86386.1| flagellar biosynthetic protein FliP [Vibrio furnissii NCTC 11218]
          Length = 299

 Score =  211 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 90/219 (41%), Positives = 140/219 (63%), Gaps = 5/219 (2%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
              P      +  ++   + T+L   P ++I++T F R ++V SILR  MG+   P N V
Sbjct: 84  TTNPDGSEDYSVNLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 143

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           I+ +A+F+TF++MSP L++  +  IQP +N QI+   A  R  EP   FM   TR KDL 
Sbjct: 144 IVGIAIFLTFFIMSPVLNKINDQAIQPYLNEQISARQAFDRAQEPMKAFMLKQTRVKDLE 203

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
            F+++A       ++   + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++
Sbjct: 204 TFVNIAG-----AEVQNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 258

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MAMGMMML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 259 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297


>gi|121612246|ref|YP_001000505.1| flagellar biosynthesis protein FliP [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|30721657|gb|AAP34259.1| FliP [Campylobacter jejuni subsp. jejuni 81-176]
 gi|87249412|gb|EAQ72372.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 244

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 103/225 (45%), Positives = 156/225 (69%), Gaps = 4/225 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           +++  ++ P   +     +    + TIL++AP ++ ++T F R I+VFS LR  MG  S+
Sbjct: 23  TVNLSLSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSM 82

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PPN ++++LAL +TF++M P   +S   GI+P ++ +I    A  + A+PF  FM  NTR
Sbjct: 83  PPNTILVTLALILTFFIMEPVATKSYNEGIKPYLSEKIGYEEAFIKGAKPFKDFMLKNTR 142

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           EKDL+LF  + +  +  T     D +   +L+P+FMISEL+ +FEIGFLI LPFL+IDM+
Sbjct: 143 EKDLALFYRIRNLPNPKT----IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMV 198

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           V++++MAMGMMMLPPT ISLPFK++ FVL+DGW+LLV+ LV+SF+
Sbjct: 199 VSSVLMAMGMMMLPPTMISLPFKLLIFVLVDGWNLLVQRLVESFV 243


>gi|301165896|emb|CBW25469.1| flagellar biosynthesis protein [Bacteriovorax marinus SJ]
          Length = 252

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 95/232 (40%), Positives = 150/232 (64%), Gaps = 7/232 (3%)

Query: 17  VFAKSSLHDVMNIPADLSISTWI---VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73
            FA+SS  ++  +  +    T +   ++   +FT+L++AP +LI+ TCF R I+V S +R
Sbjct: 24  AFAQSSGVNLPGMAINFGNGTNLVDTIQVLVLFTVLTMAPAILILCTCFTRIIVVLSFMR 83

Query: 74  TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133
             +G  S+PPN V+I  ALF++ +VM PT ++  +  I P +  +IT T A+ R+     
Sbjct: 84  QAIGTQSMPPNQVLIGFALFLSIFVMQPTGEQIYKNAITPYVEKKITTTVALDRIEFSLR 143

Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
            FM    R+ D+ LF D+      NT     + +    LIP+F+ISEL+ +F+IGFL+ +
Sbjct: 144 GFMTKQVRKADIGLFYDVTGRKAPNT----INDVPIHFLIPAFIISELKTAFQIGFLLYI 199

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           PFLI+DM+VA+++MAMGMMMLPP  +SLPFK++ FVL+DGW L+  ++++SF
Sbjct: 200 PFLILDMVVASVLMAMGMMMLPPVVVSLPFKLLLFVLVDGWQLVTGSILRSF 251


>gi|124265768|ref|YP_001019772.1| flagellar biosynthesis protein FliP [Methylibium petroleiphilum
           PM1]
 gi|124258543|gb|ABM93537.1| flagellar biosynthesis protein [Methylibium petroleiphilum PM1]
          Length = 254

 Score =  211 bits (538), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 99/244 (40%), Positives = 149/244 (61%), Gaps = 9/244 (3%)

Query: 7   FALFLVTPELVFAKSS-----LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
            ++    P +  A+++     L  ++   A  +  +  ++T   FT LS  P +L+M+T 
Sbjct: 13  VSVLSAFPAVALAQAAGGNANLPLIVGQGAGGTSYSVPIQTLLFFTALSFLPAVLLMMTG 72

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F R +IV S+LR  +G  SVPPN V+I L+LF+T +VM PT+D+      +P   NQI  
Sbjct: 73  FTRIVIVLSLLRQALGTQSVPPNQVLIGLSLFLTLFVMGPTIDKVYSEAYKPFAANQIAF 132

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
             A+ R   P   FM   TR+ DL LF  +A          K +   +R+L+P+F+ SEL
Sbjct: 133 DEALARGEAPMRSFMLKQTRQSDLMLFARLAKL----DPAVKGEDAPFRVLVPAFVTSEL 188

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
           + +F+IGFLI +PFLIIDMIVA+++M++GMMML P  ++LPFK++ FVL DGW+LL+ +L
Sbjct: 189 KSAFQIGFLIFIPFLIIDMIVASVLMSLGMMMLSPVLVALPFKLMLFVLADGWNLLLGSL 248

Query: 242 VKSF 245
             SF
Sbjct: 249 AASF 252


>gi|167005441|ref|ZP_02271199.1| flagellar biosynthesis protein FliP [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 244

 Score =  211 bits (537), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 102/225 (45%), Positives = 155/225 (68%), Gaps = 4/225 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           +++  ++ P   +     +    + TIL++AP ++ ++T F R I+VFS LR  MG  S+
Sbjct: 23  TVNLSLSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSM 82

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PPN ++++LAL +TF++M P   +S   GI+P ++ +I    A  + A+PF  FM  NTR
Sbjct: 83  PPNTILVTLALILTFFIMEPVATKSYNEGIKPYLSEKIGYEEAFIKGAKPFKDFMLKNTR 142

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           EKDL+LF  + +  +  T     D +   +L+P+FMISEL+ +FEIGFLI  PFL+IDM+
Sbjct: 143 EKDLALFYRIRNLPNPKT----IDDVPLTVLVPAFMISELKTAFEIGFLIYQPFLVIDMV 198

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           V++++MAMGMMMLPPT ISLPFK++ FVL+DGW+LLV+ LV+SF+
Sbjct: 199 VSSVLMAMGMMMLPPTMISLPFKLLIFVLVDGWNLLVQRLVESFV 243


>gi|238788324|ref|ZP_04632118.1| Flagellar biosynthetic protein fliP [Yersinia frederiksenii ATCC
           33641]
 gi|238723570|gb|EEQ15216.1| Flagellar biosynthetic protein fliP [Yersinia frederiksenii ATCC
           33641]
          Length = 243

 Score =  211 bits (537), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 94/230 (40%), Positives = 147/230 (63%), Gaps = 6/230 (2%)

Query: 18  FAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTG 75
            A + L  +++ P      +W   V+T    T LS  P  L+M+T F R IIV  +LR  
Sbjct: 16  AALAQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLLRNA 75

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVF 135
           +G  S PPN V++ LALF+TF++MSP  D+  +    P   ++I+   A+ + ++P   F
Sbjct: 76  LGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAMDKGSQPLREF 135

Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195
           M   TRE DL+L+  +A+       +   + +  RIL+P+++ SEL+ +F+IGF + +PF
Sbjct: 136 MLRQTRESDLALYARLANIP----ALEGPEVVPMRILLPAYVTSELKTAFQIGFTVFIPF 191

Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LIID++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 192 LIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 241


>gi|172059104|ref|YP_001806756.1| flagellar biosynthesis protein FliP [Burkholderia ambifaria MC40-6]
 gi|171991621|gb|ACB62540.1| flagellar biosynthetic protein FliP [Burkholderia ambifaria MC40-6]
          Length = 253

 Score =  211 bits (537), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 97/241 (40%), Positives = 149/241 (61%), Gaps = 6/241 (2%)

Query: 7   FALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPR 64
             L L         + L      P     +T+   V+T  + T+LS  P +L+M+T F R
Sbjct: 16  LILGLAPALACAQAAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTR 75

Query: 65  FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
            IIV S+LR  +G  + PPN V++ LA+F+TF+VMSP LDR+   G +P  +  +    A
Sbjct: 76  IIIVLSLLRQALGTATTPPNQVLVGLAMFLTFFVMSPVLDRAYADGYKPFSDGSMPMEQA 135

Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
           ++R   PF  FM   TRE DL+LF  ++    +   +   + +   +L+P+F+ SEL+  
Sbjct: 136 VRRGVAPFKTFMLKQTRETDLALFAKIS----KAAPMQGPEDVPLSLLVPAFVTSELKTG 191

Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           F+IGF I +PFLIIDM+VA+++M+MGMMM+ P+++SLPFK++ FVL+DGW LL+ +L +S
Sbjct: 192 FQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPSTVSLPFKLMLFVLVDGWQLLIGSLAQS 251

Query: 245 F 245
           F
Sbjct: 252 F 252


>gi|254559115|ref|YP_003066210.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens
           DM4]
 gi|254266393|emb|CAX22157.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens
           DM4]
          Length = 253

 Score =  211 bits (537), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 102/215 (47%), Positives = 152/215 (70%), Gaps = 4/215 (1%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
                +   ++   + T+L++AP +L+M T F R ++V SILR+ +G  + PPN V++SL
Sbjct: 41  GAGGTTERALQLVALITVLALAPSVLVMATSFTRIVVVLSILRSALGTQTAPPNTVMVSL 100

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           ALF+T +VM+PT   +   G++PLM  QI+++ A +R + PF  FM  N REKDL LF+D
Sbjct: 101 ALFLTAFVMAPTAREAYRTGVEPLMAGQISQSQAFERASAPFKTFMLRNVREKDLKLFLD 160

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           MA            + I   I+ P+FMISELRR+FEIGFL+ +PFLIID++VA+++MAMG
Sbjct: 161 MARQPAP----AGPEAIGLEIVTPAFMISELRRAFEIGFLLFIPFLIIDLVVASVLMAMG 216

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMMLPP +++LPFK+IFFVL+DGW+L+  +L++S+
Sbjct: 217 MMMLPPATVALPFKLIFFVLVDGWTLVAGSLIQSY 251


>gi|217976231|ref|YP_002360378.1| flagellar biosynthetic protein FliP [Methylocella silvestris BL2]
 gi|217501607|gb|ACK49016.1| flagellar biosynthetic protein FliP [Methylocella silvestris BL2]
          Length = 247

 Score =  211 bits (537), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 113/231 (48%), Positives = 165/231 (71%), Gaps = 3/231 (1%)

Query: 15  ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74
               A++     +  P   + ++ I++   + T+LSIAP +L+M T F RF++  S LR+
Sbjct: 19  SAALAEAVDLGALIPPGGGAAASRIIQLVVLLTVLSIAPGILVMTTSFTRFVVALSFLRS 78

Query: 75  GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134
           G+G+ S P NL++ISL+LFMTFYVM+PT +R+ + G++PLM+N++TE  A  ++ EPF  
Sbjct: 79  GIGLQSTPANLILISLSLFMTFYVMAPTFERAWDAGVKPLMDNKLTEEQAFGKIVEPFRD 138

Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
           FM +  REKDL LF D+A    +    +  +    R LIP+FMISELRR FEIGFLI LP
Sbjct: 139 FMMSQVREKDLKLFEDLAGEKFKTKSQSTGE---IRTLIPAFMISELRRGFEIGFLIALP 195

Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           FL+IDMIV+T+ M+MGMMMLPP+ I+LP K++FF+LIDGW+LL+ +L++S+
Sbjct: 196 FLVIDMIVSTLTMSMGMMMLPPSVIALPIKILFFILIDGWNLLIGSLIRSY 246


>gi|326319061|ref|YP_004236733.1| flagellar biosynthetic protein FliP [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375897|gb|ADX48166.1| flagellar biosynthetic protein FliP [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 259

 Score =  211 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 97/226 (42%), Positives = 142/226 (62%), Gaps = 4/226 (1%)

Query: 21  SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
            SL  ++   A  +  +  ++T   FT LS  P LL+M+T F R +IV S++R  +G  S
Sbjct: 37  GSLPVLIGSGAGGASYSVPIQTLLFFTALSFLPALLLMMTGFTRIVIVLSLIRQAIGTQS 96

Query: 81  VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
            PPN VII L+LF+TF+VM PT DR       P  NN IT   A++R   P   FM   T
Sbjct: 97  APPNQVIIGLSLFLTFFVMGPTFDRVYADAYLPYSNNTITFEQAVERAEAPMRSFMLKQT 156

Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
           R+ D +LF  +A      T     +    R+L+P+F+ SEL+ +F+IGF+I +PFL+IDM
Sbjct: 157 RQSDFALFARLAKLPSGAT----AETAPMRVLVPAFVTSELKSAFQIGFMIFIPFLVIDM 212

Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +V++I+M++GMMML P  ++LPFK++ FVL DGW+LL+ +L  SF+
Sbjct: 213 VVSSILMSLGMMMLSPVLVALPFKLMLFVLADGWNLLLGSLAASFV 258


>gi|297569685|ref|YP_003691029.1| flagellar biosynthetic protein FliP [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925600|gb|ADH86410.1| flagellar biosynthetic protein FliP [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 247

 Score =  211 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 97/209 (46%), Positives = 145/209 (69%), Gaps = 4/209 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           + ++    +FT+L++AP +L+M+TCF R I+VFS LR  +G   +PPN V++ LA+F+T 
Sbjct: 42  SVLIELLLVFTVLAMAPAILLMMTCFTRLIVVFSFLRNAIGTQQMPPNQVLVGLAMFLTL 101

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           ++M+P   +  +  I P M  +I    A+Q  AEP   FM   TREKDL LF+ +A +  
Sbjct: 102 FIMAPVFSQINQTAIGPYMEEEIGAEEALQLAAEPIREFMFKQTREKDLELFLGLARAPR 161

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
             T     D +   ILIP+FMISEL+ +F IGF++ LPFL+IDM+VA+++++MGMMMLPP
Sbjct: 162 PQT----KDDVPTHILIPAFMISELKTAFTIGFVLFLPFLVIDMVVASVLLSMGMMMLPP 217

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             ++LPFK++ FVL+DGW L+V +LV+SF
Sbjct: 218 IMVALPFKILLFVLVDGWYLIVGSLVRSF 246


>gi|114332025|ref|YP_748247.1| flagellar biosynthesis protein FliP [Nitrosomonas eutropha C91]
 gi|114309039|gb|ABI60282.1| flagellar biosynthetic protein FliP [Nitrosomonas eutropha C91]
          Length = 261

 Score =  211 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 96/244 (39%), Positives = 155/244 (63%), Gaps = 7/244 (2%)

Query: 5   CFFALFLVTPELVFAK-SSLHDVMNIPADLSISTWIVRTFGIFTILSIA--PILLIMVTC 61
           C   L +V    VFA+ + L  + + PA    +T+ +    +  + S+   P  ++M++ 
Sbjct: 20  CIILLLVVGISPVFAQKAGLPAITSTPAAGGGTTYSLSLQTLLLLTSMTFLPATVLMMSS 79

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F R IIV S+LR  +G  S PPN V++ LALF++F++MSP +D+       P   ++I+ 
Sbjct: 80  FTRIIIVLSLLRQALGTQSSPPNQVLVGLALFLSFFIMSPVIDKMYTEAYLPFSEDKISI 139

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
             A+ + ++P  +FM   TRE D++LF  ++ S     +I   D +  +IL+P+++ SEL
Sbjct: 140 IEAMDKASDPLKIFMLRQTRETDIALFARISGS----EEIESPDQVPMKILVPAYITSEL 195

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
           + +F+IGF++ +PFLIIDM+VA+ +MAMGMMML P  ISLPFK++ FVL+DGW LL+ +L
Sbjct: 196 KTAFQIGFIVFIPFLIIDMVVASTLMAMGMMMLSPMIISLPFKLMLFVLVDGWHLLIGSL 255

Query: 242 VKSF 245
            +SF
Sbjct: 256 TQSF 259


>gi|57237661|ref|YP_178909.1| flagellar biosynthesis protein FliP [Campylobacter jejuni RM1221]
 gi|86150212|ref|ZP_01068439.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|86153364|ref|ZP_01071568.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|88597515|ref|ZP_01100749.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|157415087|ref|YP_001482343.1| flagellar biosynthesis protein FliP [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|218562448|ref|YP_002344227.1| flagellar biosynthesis protein FliP [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|57166465|gb|AAW35244.1| flagellar biosynthetic protein FliP [Campylobacter jejuni RM1221]
 gi|85839328|gb|EAQ56590.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|85843090|gb|EAQ60301.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|88190107|gb|EAQ94082.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112360154|emb|CAL34948.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|157386051|gb|ABV52366.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|284926065|gb|ADC28417.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|307747729|gb|ADN90999.1| Flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315058270|gb|ADT72599.1| Flagellar biosynthesis protein fliP [Campylobacter jejuni subsp.
           jejuni S3]
 gi|315930473|gb|EFV09528.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
           jejuni 305]
 gi|315931173|gb|EFV10146.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 244

 Score =  211 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 103/225 (45%), Positives = 155/225 (68%), Gaps = 4/225 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           +++  ++ P   +     +    + TIL++AP ++ ++T F R I+VFS LR  MG  S+
Sbjct: 23  TVNLSLSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSM 82

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PPN ++++LAL +TF++M P   +S   GI+P +  +I    A  + A+PF  FM  NTR
Sbjct: 83  PPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNTR 142

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           EKDL+LF  + +  +  T     D +   +L+P+FMISEL+ +FEIGFLI LPFL+IDM+
Sbjct: 143 EKDLALFYRIRNLPNPKT----IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMV 198

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           V++++MAMGMMMLPPT ISLPFK++ FVL+DGW+LLV+ LV+SF+
Sbjct: 199 VSSVLMAMGMMMLPPTMISLPFKLLIFVLVDGWNLLVQRLVESFV 243


>gi|84388121|ref|ZP_00991017.1| flagellar biosynthesis protein [Vibrio splendidus 12B01]
 gi|84377188|gb|EAP94058.1| flagellar biosynthesis protein [Vibrio splendidus 12B01]
          Length = 309

 Score =  211 bits (537), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 87/219 (39%), Positives = 138/219 (63%), Gaps = 5/219 (2%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
                     +  ++   + T+L   P ++I++T F R ++V SILR  MG+   P N V
Sbjct: 94  TTNANGGEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 153

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           II +A+F+TF++MSP +++  E  +QP +N QI+   A      P   FM   TR KDL 
Sbjct: 154 IIGIAIFLTFFIMSPVINQVNEQAVQPYLNEQISARQAFDVAQGPIKSFMLKQTRIKDLE 213

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
            F++++       ++T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++
Sbjct: 214 TFVEISG-----AEVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 268

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MAMGMMML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 269 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 307


>gi|160876167|ref|YP_001555483.1| flagellar biosynthesis protein FliP [Shewanella baltica OS195]
 gi|217972626|ref|YP_002357377.1| flagellar biosynthesis protein FliP [Shewanella baltica OS223]
 gi|160861689|gb|ABX50223.1| flagellar biosynthetic protein FliP [Shewanella baltica OS195]
 gi|217497761|gb|ACK45954.1| flagellar biosynthetic protein FliP [Shewanella baltica OS223]
 gi|315268363|gb|ADT95216.1| flagellar biosynthetic protein FliP [Shewanella baltica OS678]
          Length = 248

 Score =  211 bits (537), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 95/247 (38%), Positives = 145/247 (58%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIM 58
           M+      + L  P    A   L  V         + + V  +   + T LS  P +LIM
Sbjct: 5   MLALVGLVILLCMPSAWAADGVLPAVTVTTGPDGSTEYSVTMQILLLMTSLSFLPAMLIM 64

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIV SILR  +G+   P N V+I ++LFMTF++M+P  DR  + G++P +  Q
Sbjct: 65  LTSFTRIIIVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDRIYDEGVKPYIEEQ 124

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           +T   A ++  EP   FM    R  DL  F++++       +I   +     +LIP+F+ 
Sbjct: 125 LTLQQAFEKGKEPLKGFMLGQVRTTDLKTFIEISGYK----NIKSPEEAPMSVLIPAFIT 180

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P  +SLPFK++ FVL+DGWSL++
Sbjct: 181 SELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVL 240

Query: 239 ENLVKSF 245
             L  SF
Sbjct: 241 GTLANSF 247


>gi|251772432|gb|EES52999.1| flagellar biosynthetic protein FliP [Leptospirillum
           ferrodiazotrophum]
          Length = 272

 Score =  210 bits (536), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 97/218 (44%), Positives = 142/218 (65%), Gaps = 3/218 (1%)

Query: 28  NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87
           N   + S     V  F + T+LS+AP +L+M+T F R ++V S LR  +G   VPPN V+
Sbjct: 57  NGNPEPSQVAMTVELFLLLTVLSLAPAILVMMTSFTRIVVVLSFLRQALGTAQVPPNQVM 116

Query: 88  ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147
           + L+LF+TF++M+P         IQP +  +I    A+ R   P   FM    R+KDL++
Sbjct: 117 VGLSLFLTFFIMAPVWQTMNRTAIQPYLAKEIAPDVALTRGMAPVRDFMFRQVRKKDLAM 176

Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
           F  +AH           D I   +LIP+F++SEL  +FE+GFLI LPFLI+D++V++++M
Sbjct: 177 FERIAHLP---ETPASRDDIPTYVLIPAFVVSELSTAFEMGFLIYLPFLILDVVVSSVLM 233

Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +MGMMMLPPT +SLPFK++ FVL+DGWSL+V +LV+SF
Sbjct: 234 SMGMMMLPPTVVSLPFKILLFVLVDGWSLIVGSLVQSF 271


>gi|167813515|ref|ZP_02445195.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei 91]
 gi|167822057|ref|ZP_02453528.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei 9]
 gi|167843670|ref|ZP_02469178.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei
           B7210]
 gi|167892141|ref|ZP_02479543.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei
           7894]
 gi|167900653|ref|ZP_02487858.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei NCTC
           13177]
 gi|167908873|ref|ZP_02495964.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei 112]
 gi|167916912|ref|ZP_02504003.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei
           BCC215]
          Length = 253

 Score =  210 bits (536), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 94/216 (43%), Positives = 140/216 (64%), Gaps = 4/216 (1%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P   +  +  V+T  + T+LS  P +L+M+T F R IIV S+LR  +G  S PPN V++ 
Sbjct: 41  PNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQAIGTASTPPNQVLVG 100

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           LALF+T +VMSP LDR+     +P     +    A+QR   PF  FM   TRE DL+LF 
Sbjct: 101 LALFLTLFVMSPVLDRAYNDAYKPFSEGTLQMDQAVQRGTAPFKAFMLKQTRETDLALFA 160

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
            ++    +   +   + +   +L+P+F+ SEL+  F+IGF I +PFLIIDM+VA+++M+M
Sbjct: 161 KIS----KAAPMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSM 216

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMM+ P ++SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 217 GMMMVSPATVSLPFKLMLFVLVDGWQLLIGSLAQSF 252


>gi|148926523|ref|ZP_01810205.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|145845217|gb|EDK22311.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni
           CG8486]
          Length = 244

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 103/225 (45%), Positives = 155/225 (68%), Gaps = 4/225 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           +++  ++ P   +     +    + TIL++AP ++ ++T F R I+VFS LR  MG  S+
Sbjct: 23  TVNLSLSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSM 82

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PPN ++++LAL +TF++M P   +S   GI+P +  +I    A  + A+PF  FM  NTR
Sbjct: 83  PPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNTR 142

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           EKDL+LF  + +  +  T     D +   +L+P+FMISEL+ +FEIGFLI LPFL+IDM+
Sbjct: 143 EKDLALFYRIRNLPNPKT----IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMV 198

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           V++++MAMGMMMLPPT ISLPFK++ FVL+DGW+LLV+ LV+SF+
Sbjct: 199 VSSVLMAMGMMMLPPTMISLPFKLLIFVLVDGWNLLVQRLVESFV 243


>gi|238758099|ref|ZP_04619279.1| Flagellar biosynthetic protein fliP [Yersinia aldovae ATCC 35236]
 gi|238703637|gb|EEP96174.1| Flagellar biosynthetic protein fliP [Yersinia aldovae ATCC 35236]
          Length = 249

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 95/230 (41%), Positives = 146/230 (63%), Gaps = 6/230 (2%)

Query: 18  FAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTG 75
            A + L  +++ P      +W   V+T    T LS  P  L+M+T F R IIV  +LR  
Sbjct: 22  AALAQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLLRNA 81

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVF 135
           +G  S PPN V++ L LF+TF++MSP  D+  +    P   ++I+   AI + A+P   F
Sbjct: 82  LGTPSAPPNQVMLGLTLFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAIDKGAQPLREF 141

Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195
           M   TRE DL+L+  +A+       +   + +  RIL+P+++ SEL+ +F+IGF + +PF
Sbjct: 142 MLRQTRESDLALYARLANLP----PLEGPEVVPMRILLPAYVTSELKTAFQIGFTVFIPF 197

Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LIID++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 198 LIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 247


>gi|153951658|ref|YP_001398263.1| flagellar biosynthesis protein FliP [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152939104|gb|ABS43845.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 244

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 103/225 (45%), Positives = 154/225 (68%), Gaps = 4/225 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           +++  ++ P   +     +    + TIL++AP ++ ++T F R I+VFS LR  MG  S+
Sbjct: 23  TINLSLSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSM 82

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PPN ++++LAL +TF++M P   +S   GI+P +  QI    A  +  +PF  FM  NTR
Sbjct: 83  PPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEQIGYEEAFIKGTKPFKDFMLKNTR 142

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           EKDL+LF  + +  +  T     D +   +L+P+FMISEL+ +FEIGFLI LPFL+IDM+
Sbjct: 143 EKDLALFYRIRNLPNPKT----IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMV 198

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           V++++MAMGMMMLPPT ISLPFK++ FVL+DGW+LLV+ LV+SF+
Sbjct: 199 VSSVLMAMGMMMLPPTMISLPFKLLIFVLVDGWNLLVQRLVESFV 243


>gi|167750712|ref|ZP_02422839.1| hypothetical protein EUBSIR_01690 [Eubacterium siraeum DSM 15702]
 gi|167656391|gb|EDS00521.1| hypothetical protein EUBSIR_01690 [Eubacterium siraeum DSM 15702]
          Length = 307

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 91/218 (41%), Positives = 133/218 (61%), Gaps = 9/218 (4%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  +    + T+LS+AP LL+M+T F R II FS LRT M   S PPN+V+  L+LF+T 
Sbjct: 88  SQSLEVILLVTVLSLAPSLLVMMTSFARIIICFSFLRTAMQTQSTPPNMVLTGLSLFLTI 147

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           ++M P      E   QP    ++T   AI    +P   FM   T   D+  F+D+   S 
Sbjct: 148 FIMWPVFSEINETAYQPYAAGEMTMEQAIDAAGKPLKTFMLKQTTNDDMKFFLDLKGQSM 207

Query: 157 RNTDITKNDHIE---------YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
            +      D+I          +  +IP+F++SEL+R+F++GFLI +PFL+ID++V++ +M
Sbjct: 208 SDVTGGATDNITLENYSEKLGFETVIPAFIVSELKRAFQMGFLIFIPFLVIDLVVSSTLM 267

Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           AMGMMMLPP  ISLPFK+I FVL+DGW L+V  +V S+
Sbjct: 268 AMGMMMLPPAMISLPFKIILFVLVDGWQLMVGTIVNSY 305


>gi|221214540|ref|ZP_03587510.1| flagellar biosynthetic protein FliP [Burkholderia multivorans CGD1]
 gi|221165430|gb|EED97906.1| flagellar biosynthetic protein FliP [Burkholderia multivorans CGD1]
          Length = 253

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 94/216 (43%), Positives = 144/216 (66%), Gaps = 4/216 (1%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P   +  +  V+T  + T+LS  P +++M+T F R IIV S+LR  +G  + PPN V++ 
Sbjct: 41  PNGGTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTRIIIVLSLLRQALGTATTPPNQVLVG 100

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           LALF+TF+VMSP LDR+   G +P  +  +    A+QR   PF  FM   TRE DL+LF 
Sbjct: 101 LALFLTFFVMSPVLDRAYTDGYKPFSDGTLPMEQAVQRGVAPFKGFMLKQTRETDLALFA 160

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
            ++    +   +   + +   +L+P+F+ SEL+  F+IGF I +PFLIIDM+VA+++M+M
Sbjct: 161 KIS----KAAPMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSM 216

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMM+ P+++SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 217 GMMMVSPSTVSLPFKLMLFVLVDGWQLLIGSLAQSF 252


>gi|291558213|emb|CBL35330.1| flagellar biosynthetic protein FliP [Eubacterium siraeum V10Sc8a]
          Length = 296

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 91/218 (41%), Positives = 133/218 (61%), Gaps = 9/218 (4%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  +    + T+LS+AP LL+M+T F R II FS LRT M   S PPN+V+  L+LF+T 
Sbjct: 77  SQSLEVILLVTVLSLAPSLLVMMTSFARIIICFSFLRTAMQTQSTPPNMVLTGLSLFLTI 136

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           ++M P      E   QP    ++T   AI    +P   FM   T   D+  F+D+   S 
Sbjct: 137 FIMWPVFSEINETAYQPYAAGEMTMEQAIDAAGKPLKTFMLKQTTNDDMKFFLDLKGQSM 196

Query: 157 RNTDITKNDHIE---------YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
            +      D+I          +  +IP+F++SEL+R+F++GFLI +PFL+ID++V++ +M
Sbjct: 197 SDVTGGATDNITLENYSEKLGFETVIPAFIVSELKRAFQMGFLIFIPFLVIDLVVSSTLM 256

Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           AMGMMMLPP  ISLPFK+I FVL+DGW L+V  +V S+
Sbjct: 257 AMGMMMLPPAMISLPFKIILFVLVDGWQLMVGTIVNSY 294


>gi|295678047|ref|YP_003606571.1| flagellar biosynthetic protein FliP [Burkholderia sp. CCGE1002]
 gi|295437890|gb|ADG17060.1| flagellar biosynthetic protein FliP [Burkholderia sp. CCGE1002]
          Length = 269

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 99/235 (42%), Positives = 148/235 (62%), Gaps = 7/235 (2%)

Query: 15  ELVFAK-SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
            L FA+ + L      P     +T+   V+T  + T+LS  P +++M+T F R +IV S+
Sbjct: 39  TLSFAQTAGLPAFTTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTRIVIVLSL 98

Query: 72  LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
           LR  +G  + PPN V++ LALF+TF+VMSP LD++   G +P     +    A+ R   P
Sbjct: 99  LRQALGTTTTPPNQVLVGLALFLTFFVMSPVLDKAYNEGYKPFSEGTLPMDQAVSRGVAP 158

Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
           F  FM   TRE DL+LF  ++H       +   + +   +L+PSF+ SEL+  F IGF I
Sbjct: 159 FKTFMLRQTRESDLALFARISH----AAPMQGPEDVPLSLLVPSFVTSELKTGFTIGFTI 214

Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
            +PFLIIDM+VA+++M+MGMMM+ P +ISLPFK++ FVL+DGW LL+ +L +SF+
Sbjct: 215 FIPFLIIDMVVASVLMSMGMMMVSPATISLPFKLMLFVLVDGWQLLLGSLAQSFV 269


>gi|283957192|ref|ZP_06374656.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283791368|gb|EFC30173.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 244

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 102/225 (45%), Positives = 154/225 (68%), Gaps = 4/225 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           +++  ++ P   +     +    + TIL++AP ++ ++T F R I+VFS LR  MG  S+
Sbjct: 23  TVNLSLSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSM 82

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PPN ++++LAL +TF++M P   +S   GI+P +  +I    A  +  +PF  FM  NTR
Sbjct: 83  PPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEKIGYEEAFIKGVKPFKDFMLKNTR 142

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           EKDL+LF  + +  +  T     D +   +L+P+FMISEL+ +FEIGFLI LPFL+IDM+
Sbjct: 143 EKDLALFYRIRNLPNPKT----IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMV 198

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           V++++MAMGMMMLPPT ISLPFK++ FVL+DGW+LLV+ LV+SF+
Sbjct: 199 VSSVLMAMGMMMLPPTMISLPFKLLIFVLVDGWNLLVQRLVESFV 243


>gi|145598592|ref|YP_001162668.1| flagellar biosynthesis protein FliP [Yersinia pestis Pestoides F]
 gi|149366232|ref|ZP_01888267.1| flagellar biosynthetic protein FliP [Yersinia pestis CA88-4125]
 gi|153950312|ref|YP_001401271.1| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis IP
           31758]
 gi|165925983|ref|ZP_02221815.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938702|ref|ZP_02227257.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010952|ref|ZP_02231850.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166210900|ref|ZP_02236935.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167420038|ref|ZP_02311791.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425832|ref|ZP_02317585.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170024627|ref|YP_001721132.1| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis
           YPIII]
 gi|186895134|ref|YP_001872246.1| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis
           PB1/+]
 gi|218928941|ref|YP_002346816.1| flagellar biosynthesis protein FliP [Yersinia pestis CO92]
 gi|229896265|ref|ZP_04511435.1| flagellar biosynthetic protein FliP [Yersinia pestis Pestoides A]
 gi|229897202|ref|ZP_04512358.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229897929|ref|ZP_04513080.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229902840|ref|ZP_04517957.1| flagellar biosynthetic protein FliP [Yersinia pestis Nepal516]
 gi|270486627|ref|ZP_06203701.1| flagellar biosynthetic protein FliP [Yersinia pestis KIM D27]
 gi|294504013|ref|YP_003568075.1| flagellar biosynthesis protein [Yersinia pestis Z176003]
 gi|21959354|gb|AAM86043.1|AE013852_5 flagellar biosynthesis protein [Yersinia pestis KIM 10]
 gi|45436250|gb|AAS61806.1| flagellar biosynthesis protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51589311|emb|CAH20932.1| flagellar biosynthetic protein FliP [Yersinia pseudotuberculosis IP
           32953]
 gi|108776112|gb|ABG18631.1| flagellar biosynthetic protein FliP [Yersinia pestis Nepal516]
 gi|108779105|gb|ABG13163.1| flagellar biosynthetic protein FliP [Yersinia pestis Antiqua]
 gi|145210288|gb|ABP39695.1| flagellar biosynthetic protein FliP [Yersinia pestis Pestoides F]
 gi|149292645|gb|EDM42719.1| flagellar biosynthetic protein FliP [Yersinia pestis CA88-4125]
 gi|152961807|gb|ABS49268.1| flagellar biosynthetic protein FliP [Yersinia pseudotuberculosis IP
           31758]
 gi|165913316|gb|EDR31938.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922187|gb|EDR39364.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990296|gb|EDR42597.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166208080|gb|EDR52560.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166961733|gb|EDR57754.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167055231|gb|EDR65028.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169751161|gb|ACA68679.1| flagellar biosynthetic protein FliP [Yersinia pseudotuberculosis
           YPIII]
 gi|186698160|gb|ACC88789.1| flagellar biosynthetic protein FliP [Yersinia pseudotuberculosis
           PB1/+]
 gi|229680287|gb|EEO76386.1| flagellar biosynthetic protein FliP [Yersinia pestis Nepal516]
 gi|229688970|gb|EEO81035.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229693539|gb|EEO83588.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229701188|gb|EEO89217.1| flagellar biosynthetic protein FliP [Yersinia pestis Pestoides A]
 gi|262361801|gb|ACY58522.1| flagellar biosynthesis protein [Yersinia pestis D106004]
 gi|262366063|gb|ACY62620.1| flagellar biosynthesis protein [Yersinia pestis D182038]
 gi|270335131|gb|EFA45908.1| flagellar biosynthetic protein FliP [Yersinia pestis KIM D27]
 gi|294354472|gb|ADE64813.1| flagellar biosynthesis protein [Yersinia pestis Z176003]
 gi|320015442|gb|ADV99013.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 274

 Score =  210 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 98/242 (40%), Positives = 150/242 (61%), Gaps = 8/242 (3%)

Query: 6   FFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFP 63
              L L     V A+  L  +++ P      +W   V+T    T LS  P  L+M+T F 
Sbjct: 37  LGLLTLFCSPSVLAQ--LPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFT 94

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
           R IIV  +LR  MG  S PPN V++ LALF+TF++MSP  D+  +    P   ++I+   
Sbjct: 95  RIIIVLGLLRNAMGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQEAYLPFSQDKISMDV 154

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
           A+ + ++P   FM   TRE DL+L+  +A+       +   + +  RIL+P+++ SEL+ 
Sbjct: 155 ALDKGSQPLREFMLRQTRESDLALYARLANLP----PLEGPEMVPMRILLPAYVTSELKT 210

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
           +F+IGF + +PFLIID++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +
Sbjct: 211 AFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQ 270

Query: 244 SF 245
           SF
Sbjct: 271 SF 272


>gi|171316887|ref|ZP_02906096.1| flagellar biosynthetic protein FliP [Burkholderia ambifaria MEX-5]
 gi|171097968|gb|EDT42786.1| flagellar biosynthetic protein FliP [Burkholderia ambifaria MEX-5]
          Length = 253

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 97/241 (40%), Positives = 149/241 (61%), Gaps = 6/241 (2%)

Query: 7   FALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPR 64
             L L         + L      P     +T+   V+T  + T+LS  P +L+M+T F R
Sbjct: 16  LILGLAPALACAQAAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTR 75

Query: 65  FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
            IIV S+LR  +G  + PPN V++ LA+F+TF+VMSP LDR+   G +P  +  +    A
Sbjct: 76  IIIVLSLLRQALGTATTPPNQVLVGLAMFLTFFVMSPVLDRAYADGYKPFSDGSMPMEQA 135

Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
           ++R   PF  FM   TRE DL+LF  ++    +   +   + +   +L+P+F+ SEL+  
Sbjct: 136 VRRGVAPFKTFMLKQTRETDLALFAKIS----KAAPMQGPEDVPLSLLVPAFVTSELKTG 191

Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           F+IGF I +PFLIIDM+VA+++M+MGMMM+ P+++SLPFK++ FVL+DGW LL+ +L +S
Sbjct: 192 FQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPSTVSLPFKLMLFVLVDGWQLLIGSLAQS 251

Query: 245 F 245
           F
Sbjct: 252 F 252


>gi|291280091|ref|YP_003496926.1| flagellar transport protein FliP [Deferribacter desulfuricans SSM1]
 gi|290754793|dbj|BAI81170.1| flagellar transport protein FliP [Deferribacter desulfuricans SSM1]
          Length = 246

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 103/247 (41%), Positives = 156/247 (63%), Gaps = 9/247 (3%)

Query: 4   YCFFALFLVTPELVFAKSSLHD-----VMNIPADLSISTWIVRTFGIFTILSIAPILLIM 58
           Y  F   L    LV A  ++        ++   + +     ++   + TIL++AP +L+M
Sbjct: 3   YICFIFLLFGQNLVLAADNIPLPAVRFGIDTAKNQNDVAITLQIIFLITILTLAPAILLM 62

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           VT F R IIVFS LR+ +G    PPN V+I LALF+TF++MSP L+   +  +QP M+ +
Sbjct: 63  VTSFTRLIIVFSFLRSALGTQQSPPNQVLIGLALFLTFFIMSPVLNDMYKNAVQPYMDGK 122

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           +  T A+    +P   F+  NTR+K+L  F++++      T     D I   +LIP+F+ 
Sbjct: 123 LNFTQALVEAKKPLRKFLLKNTRKKELLTFIEISKVQRPKT----PDDIPDSVLIPAFIT 178

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +FEIGFL+ LPFL+ID +VA+++++MGMMMLPP  ISLPFK++ FVL+DGW L+V
Sbjct: 179 SELQTAFEIGFLLFLPFLVIDFVVASVLLSMGMMMLPPVMISLPFKILLFVLVDGWGLIV 238

Query: 239 ENLVKSF 245
            ++VKSF
Sbjct: 239 GSMVKSF 245


>gi|146341897|ref|YP_001206945.1| flagellar biosynthesis protein FliP [Bradyrhizobium sp. ORS278]
 gi|146194703|emb|CAL78728.1| Flagellar transport protein FliP [Bradyrhizobium sp. ORS278]
          Length = 226

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 113/228 (49%), Positives = 161/228 (70%), Gaps = 4/228 (1%)

Query: 18  FAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMG 77
            A   +   +       ++   V+   + T+LSIAP +L+M+T F R ++V S+LRT MG
Sbjct: 1   MAAQDISINLGGAGGGGVTERAVQLIALLTVLSIAPSILVMMTSFTRIVVVLSLLRTAMG 60

Query: 78  MGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMR 137
             + PPN VII+LA+F+T +VM P L +S + G++PL+ NQIT   A+QR + P   FM+
Sbjct: 61  TATAPPNSVIIALAMFLTAFVMGPVLQKSYDDGVRPLIENQITVEDALQRASVPLRGFMQ 120

Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197
            N REKDL LFMD++  +   T     D +  RIL+P+FMISEL+R+FEIGFL+ LPFLI
Sbjct: 121 KNVREKDLKLFMDLSGEAPPAT----PDELSLRILVPAFMISELKRAFEIGFLLFLPFLI 176

Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ID++VA+++M+MGMMMLPP  +SLPFK+IFFVL+DGWSL+  +LV+S+
Sbjct: 177 IDLVVASVLMSMGMMMLPPVVVSLPFKLIFFVLVDGWSLVAGSLVQSY 224


>gi|58039965|ref|YP_191929.1| flagellar biosynthesis protein FliP [Gluconobacter oxydans 621H]
 gi|58002379|gb|AAW61273.1| Flagellar biosynthetic protein FliP [Gluconobacter oxydans 621H]
          Length = 255

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 104/247 (42%), Positives = 162/247 (65%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIP--ADLSISTWIVRTFGIFTILSIAPILLIM 58
           ++        L  P L  A++   D+           ++ +V+   + T+LS+AP LL+M
Sbjct: 11  LVPVFVLLACLAFPHLAHAQAVSIDLGQNGASGGAGTTSRLVQLTALITVLSLAPSLLVM 70

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R +IV S+LR+ +G   +PPN V+I LALF+T +VM PTL +S + GI+PLM  +
Sbjct: 71  ITAFTRIVIVLSLLRSALGAQGMPPNTVLIGLALFLTLFVMQPTLQKSWDAGIEPLMAGR 130

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           + E   +   A+PF  FM    R  D++ F+++AH         K     +R+L+P+FMI
Sbjct: 131 VGEMEGLTAAAQPFHDFMAVTARPADVATFLNIAHEKPP----AKIGDTPWRVLVPAFMI 186

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
            ELRR FE+GFL+ LPFL+ID++V++++M++GMMMLPP+++SLPFK+IFFV++DGWSL+ 
Sbjct: 187 GELRRGFEMGFLLYLPFLVIDLVVSSVLMSLGMMMLPPSTVSLPFKLIFFVVVDGWSLVA 246

Query: 239 ENLVKSF 245
            +LV+SF
Sbjct: 247 GSLVRSF 253


>gi|197120185|ref|YP_002140612.1| flagellar biosynthesis protein FliP [Geobacter bemidjiensis Bem]
 gi|197089545|gb|ACH40816.1| flagellar biogenesis protein FliP [Geobacter bemidjiensis Bem]
          Length = 247

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 91/209 (43%), Positives = 144/209 (68%), Gaps = 4/209 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           + +++ F + T++S+AP LL+M T F R ++V S LR+ +G    P N +++ L+LF+TF
Sbjct: 42  SVVLQIFFLMTVISLAPSLLMMTTSFTRIVVVLSFLRSALGTQQAPSNQIVVGLSLFLTF 101

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           ++M+P   +     +QP   +QIT+  A++R   P   FM +  REKDL+LF++++    
Sbjct: 102 FIMAPVWQQVNANALQPYRASQITQEEAVKRGVAPLRKFMLSQVREKDLALFINLSKLPR 161

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
                   D I    LIP++M+SEL+ +F+IGFLI +PFL++DM+VA+++M+MGMMMLPP
Sbjct: 162 PK----NADDIPTLTLIPAYMVSELKTAFQIGFLIFIPFLVLDMVVASVLMSMGMMMLPP 217

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             ISLPFK++ FVL+DGW L++ +LVKSF
Sbjct: 218 VMISLPFKILLFVLVDGWGLVIGSLVKSF 246


>gi|86152107|ref|ZP_01070319.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|85840892|gb|EAQ58142.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
           jejuni 260.94]
          Length = 244

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 103/225 (45%), Positives = 155/225 (68%), Gaps = 4/225 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           +++  ++ P   +     +    + TIL++AP ++ ++T F R I+VFS LR  MG  S+
Sbjct: 23  TVNLSLSAPNTPNQLVTTLNIVIVLTILALAPSIVFVITSFLRLIVVFSFLRQAMGTQSM 82

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PPN ++++LAL +TF++M P   +S   GI+P +  +I    A  + A+PF  FM  NTR
Sbjct: 83  PPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNTR 142

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           EKDL+LF  + +  +  T     D +   +L+P+FMISEL+ +FEIGFLI LPFL+IDM+
Sbjct: 143 EKDLALFYRIRNLPNPKT----IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMV 198

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           V++++MAMGMMMLPPT ISLPFK++ FVL+DGW+LLV+ LV+SF+
Sbjct: 199 VSSVLMAMGMMMLPPTMISLPFKLLIFVLVDGWNLLVQRLVESFV 243


>gi|291532049|emb|CBK97634.1| flagellar biosynthetic protein FliP [Eubacterium siraeum 70/3]
          Length = 307

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 90/218 (41%), Positives = 132/218 (60%), Gaps = 9/218 (4%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  +    + T+LS+AP LL+M+T F R II FS LRT M     PPN+V+  L+LF+T 
Sbjct: 88  SQSLEVILLVTVLSLAPSLLVMMTSFARIIICFSFLRTAMQTQPTPPNMVLTGLSLFLTI 147

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           ++M P      E   QP    ++T   AI    +P   FM   T   D+  F+D+   S 
Sbjct: 148 FIMWPVFSEINETAYQPYAAGEMTMEQAIDAAGKPLKTFMLKQTTNDDMKFFLDLKGQSM 207

Query: 157 RNTDITKNDHIE---------YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
            +      D+I          +  +IP+F++SEL+R+F++GFLI +PFL+ID++V++ +M
Sbjct: 208 SDVTGGATDNITLENYSEKLGFETVIPAFIVSELKRAFQMGFLIFIPFLVIDLVVSSTLM 267

Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           AMGMMMLPP  ISLPFK+I FVL+DGW L+V  +V S+
Sbjct: 268 AMGMMMLPPAMISLPFKIILFVLVDGWQLMVGTIVNSY 305


>gi|218528509|ref|YP_002419325.1| flagellar biosynthetic protein FliP [Methylobacterium
           chloromethanicum CM4]
 gi|240137103|ref|YP_002961572.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens
           AM1]
 gi|218520812|gb|ACK81397.1| flagellar biosynthetic protein FliP [Methylobacterium
           chloromethanicum CM4]
 gi|240007069|gb|ACS38295.1| flagellar biosynthesis protein FliP [Methylobacterium extorquens
           AM1]
          Length = 253

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 102/215 (47%), Positives = 152/215 (70%), Gaps = 4/215 (1%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
                +   ++   + T+L++AP +L+M T F R ++V SILR+ +G  + PPN V++SL
Sbjct: 41  GAGGTTERALQLVALITVLALAPSVLVMATSFTRIVVVLSILRSALGTQTAPPNTVMVSL 100

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           ALF+T +VM+PT   +   G++PLM  QI+++ A +R + PF  FM  N REKDL LF+D
Sbjct: 101 ALFLTAFVMAPTAREAYRTGVEPLMAGQISQSQAFERASAPFKTFMLRNVREKDLKLFLD 160

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           MA            + I   I+ P+FMISELRR+FEIGFL+ +PFLIID++VA+++MAMG
Sbjct: 161 MARQPAP----AGPEAIGLEIVTPAFMISELRRAFEIGFLLFIPFLIIDLVVASVLMAMG 216

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMMLPP +++LPFK+IFFVL+DGW+L+  +L++S+
Sbjct: 217 MMMLPPATVALPFKLIFFVLVDGWTLVAGSLIQSY 251


>gi|115350085|ref|YP_771924.1| flagellar biosynthesis protein FliP [Burkholderia ambifaria AMMD]
 gi|115280073|gb|ABI85590.1| flagellar biosynthetic protein FliP [Burkholderia ambifaria AMMD]
          Length = 253

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 97/241 (40%), Positives = 149/241 (61%), Gaps = 6/241 (2%)

Query: 7   FALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPR 64
             L L         + L      P     +T+   V+T  + T+LS  P +L+M+T F R
Sbjct: 16  LILGLAPALACAQAAGLPAFNTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTR 75

Query: 65  FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
            IIV S+LR  +G  + PPN V++ LA+F+TF+VMSP LDR+   G +P  +  +    A
Sbjct: 76  IIIVLSLLRQALGTATTPPNQVLVGLAMFLTFFVMSPVLDRAYADGYKPFSDGSMPMEQA 135

Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
           ++R   PF  FM   TRE DL+LF  ++    +   +   + +   +L+P+F+ SEL+  
Sbjct: 136 VRRGVAPFKTFMLKQTRETDLALFAKIS----KAAPMQGPEDVPLSLLVPAFVTSELKTG 191

Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           F+IGF I +PFLIIDM+VA+++M+MGMMM+ P+++SLPFK++ FVL+DGW LL+ +L +S
Sbjct: 192 FQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPSTVSLPFKLMLFVLVDGWQLLIGSLAQS 251

Query: 245 F 245
           F
Sbjct: 252 F 252


>gi|238751771|ref|ZP_04613259.1| Flagellar biosynthetic protein fliP [Yersinia rohdei ATCC 43380]
 gi|238710042|gb|EEQ02272.1| Flagellar biosynthetic protein fliP [Yersinia rohdei ATCC 43380]
          Length = 243

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 97/247 (39%), Positives = 153/247 (61%), Gaps = 8/247 (3%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           M +       L+    V+A+  L  +++ P      +W   V+T    T LS  P  L+M
Sbjct: 1   MNKPLLALFALLCSPSVWAQ--LPGIISQPLANGGQSWSLPVQTLVFITALSFLPAALLM 58

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIV  +LR  +G  S PPN V++ LALF+TF++MSP  D+  +    P   ++
Sbjct: 59  MTSFTRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDK 118

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   A+ + ++P   FM   TRE DL+L+  +A+       +   + +  RIL+P+++ 
Sbjct: 119 ISMEVAMDKGSQPLREFMLRQTRETDLALYARLANLP----PLEGPEVVPMRILLPAYVT 174

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF + +PFLIID++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+
Sbjct: 175 SELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLL 234

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 235 GSLAQSF 241


>gi|260598457|ref|YP_003211028.1| flagellar biosynthetic protein fliP [Cronobacter turicensis z3032]
 gi|260217634|emb|CBA31933.1| Flagellar biosynthetic protein fliP [Cronobacter turicensis z3032]
          Length = 223

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 98/225 (43%), Positives = 149/225 (66%), Gaps = 6/225 (2%)

Query: 23  LHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
           +  +++ P      +W   V+T    T L+  P +L+M+T F R IIVF +LR  +G  S
Sbjct: 1   MPGLVSQPMSGGGQSWSLPVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGTPS 60

Query: 81  VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
            PPN V++ LALF+TF++MSP +D+      QP   N+I+   A+ R A+P   FM   T
Sbjct: 61  APPNQVLLGLALFLTFFIMSPVIDKIYSDAYQPFTENKISMEVALDRGAQPLREFMLRQT 120

Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
           RE DL+LF  +A++      I   + +  RIL+P+++ SEL+ +F+IGF + +PFLIID+
Sbjct: 121 READLALFAKLANT----QPIQGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDL 176

Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +VA+++MA+GMMM+PP SI+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 177 VVASVLMALGMMMVPPASIALPFKLMLFVLVDGWQLLVGSLAQSF 221


>gi|160880831|ref|YP_001559799.1| flagellar biosynthetic protein FliP [Clostridium phytofermentans
           ISDg]
 gi|160429497|gb|ABX43060.1| flagellar biosynthetic protein FliP [Clostridium phytofermentans
           ISDg]
          Length = 281

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 94/219 (42%), Positives = 144/219 (65%), Gaps = 4/219 (1%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
            N        +  ++   I T++++AP +LIM+T F R I+V   +R+ +G  + PPN V
Sbjct: 66  FNSGDGTGSLSATLKMLLILTLITLAPSILIMLTSFIRIIVVLHFVRSALGTQTTPPNQV 125

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           +I LALF+T ++MSP +       +QPL   +IT+  A  +  EP   FM + T EKD+ 
Sbjct: 126 LIGLALFLTLFIMSPIITNINTNAVQPLSKGEITQEQAFTQGMEPLRDFMFDQTNEKDMQ 185

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
           LF+D+A      T++     +    LIP+F+ISELR +F IGFLI +PFLIIDM+VA+ +
Sbjct: 186 LFLDIAGV----TEVNDRADVPSTALIPAFIISELRAAFIIGFLIYIPFLIIDMVVASTL 241

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+MGMMMLPPT+IS+PFK++ F++ DGW+L++ +++KSF
Sbjct: 242 MSMGMMMLPPTTISMPFKILLFIMADGWNLIIGSVIKSF 280


>gi|258404717|ref|YP_003197459.1| flagellar biosynthetic protein FliP [Desulfohalobium retbaense DSM
           5692]
 gi|257796944|gb|ACV67881.1| flagellar biosynthetic protein FliP [Desulfohalobium retbaense DSM
           5692]
          Length = 252

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 103/237 (43%), Positives = 154/237 (64%), Gaps = 4/237 (1%)

Query: 9   LFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIV 68
           L L      F    L   ++   D       ++   + T+LS+AP +L+M T F R +IV
Sbjct: 19  LLLPQAGWGFEIPRLTLGVDGTNDPDQVATGIQILFLLTVLSLAPAILLMTTSFIRIVIV 78

Query: 69  FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128
            S +R  MG+  +PPN VII LALF+TF++MSP L +  +  +QP ++ +I +  AI+R 
Sbjct: 79  LSFIRQAMGVRQMPPNQVIIGLALFLTFFIMSPVLSQMNQDALQPYLDQEIGDAQAIERA 138

Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188
             P   FM N  R+KDL LF+D++ S    T     + I   +L+P+FM+SE++R+F+IG
Sbjct: 139 VSPMREFMFNQVRQKDLQLFVDISGSDQPET----REEIRTMLLVPAFMLSEIKRAFQIG 194

Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           FLI +PFL+IDM+ A+++M+MGM+MLPP  ISLPFK++ FVL+DGW L+V +LV+SF
Sbjct: 195 FLIFVPFLVIDMVTASVLMSMGMLMLPPVIISLPFKILLFVLVDGWHLVVGSLVRSF 251


>gi|242238991|ref|YP_002987172.1| flagellar biosynthetic protein FliP [Dickeya dadantii Ech703]
 gi|242131048|gb|ACS85350.1| flagellar biosynthetic protein FliP [Dickeya dadantii Ech703]
          Length = 254

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 101/247 (40%), Positives = 162/247 (65%), Gaps = 7/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           ++R  FF + +V      + + L  +++ P      +W   V+T  + T L+  P +L+M
Sbjct: 11  LVRRSFFTILIVFFAP-NSWAQLPGIISQPLANGAQSWSLPVQTLVLLTSLTFIPAVLLM 69

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIV  +LR+ +G  + PPN ++I L+LF+TF++MSP L +  +   QP   N+
Sbjct: 70  MTSFTRIIIVLGLLRSALGTPTAPPNQILIGLSLFLTFFIMSPVLTKVYQDAYQPFSENK 129

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I   TAI+R ++P   FM   TRE DL+LF  +A  S     ++  + +  R+L+P+F+ 
Sbjct: 130 INMETAIERGSQPLRQFMLRQTRETDLALFARLAEIS----ALSGPEAVPMRVLVPAFVT 185

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF I +PFLIID++VA+++MA+GMMM+PP ++SLPFK++ FVL+DGW LL+
Sbjct: 186 SELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGWQLLL 245

Query: 239 ENLVKSF 245
            +LV+SF
Sbjct: 246 SSLVQSF 252


>gi|163789635|ref|ZP_02184073.1| flagellar biosynthesis protein P [Carnobacterium sp. AT7]
 gi|159875167|gb|EDP69233.1| flagellar biosynthesis protein P [Carnobacterium sp. AT7]
          Length = 254

 Score =  210 bits (535), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 93/245 (37%), Positives = 148/245 (60%), Gaps = 8/245 (3%)

Query: 5   CFFALFLVTPELVFAKSSLHDVMNI----PADLSISTWIVRTFGIFTILSIAPILLIMVT 60
            F   F++ P++  A      +  I          ++ +V+ F + T LS+AP  L++ T
Sbjct: 13  LFLTSFVLFPQVASAAELTDGLDGITDLFGKQSGGTSEVVQLFLLTTALSLAPTFLVLTT 72

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
           CF R I+V S +R+ +G    PPNLV++ +ALF++ ++M P     ++  I P +N +I+
Sbjct: 73  CFTRIIVVLSFVRSSLGTQQNPPNLVLMGIALFLSLFIMQPVYTDVMDEAITPYINEEIS 132

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A +    P   FM   TR++D+ LF+D++ +          + +   + IP+F+ISE
Sbjct: 133 GIEAFELAELPIKEFMYKQTRDEDIQLFLDISKTEKP----ADVNDLPLTVAIPAFIISE 188

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           LR +F IGFLI +PFL+ID++VA+I+M+MGM ML P  ISLPFK++ FVL+DGW L+VE+
Sbjct: 189 LRTAFTIGFLIFIPFLVIDIVVASILMSMGMFMLSPVMISLPFKLLLFVLVDGWYLVVES 248

Query: 241 LVKSF 245
           LV  F
Sbjct: 249 LVTGF 253


>gi|239826628|ref|YP_002949252.1| flagellar biosynthesis protein FliP [Geobacillus sp. WCH70]
 gi|239806921|gb|ACS23986.1| flagellar biosynthetic protein FliP [Geobacillus sp. WCH70]
          Length = 222

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 95/209 (45%), Positives = 146/209 (69%), Gaps = 4/209 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  V+   + T+LSIAP +LIM+TCF R +IV S +RT +G   +PPN V++ LALF+TF
Sbjct: 17  SMSVKLLLLLTVLSIAPGILIMMTCFTRIVIVLSFVRTSLGTQQMPPNQVLVGLALFLTF 76

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           ++M+PT     +  +QPL + +I+   A +R + P   FM  +TR+KDL+LF+  + +  
Sbjct: 77  FIMAPTFKEINDQALQPLFSEKISLEQAYERASVPIKEFMSKHTRQKDLALFLSYSGAEK 136

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
                     I    L+P+F ISE++ +F++GF+I +PFL+IDMIVA+++M+MGMMMLPP
Sbjct: 137 PK----SVQDIPLTTLVPAFAISEIKTAFQMGFMIFIPFLVIDMIVASVLMSMGMMMLPP 192

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             ISLPFK++ FVL+DGW L+V++L++SF
Sbjct: 193 VMISLPFKILLFVLVDGWYLVVKSLLESF 221


>gi|260752858|ref|YP_003225751.1| flagellar biosynthesis protein FliP [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|258552221|gb|ACV75167.1| flagellar biosynthetic protein FliP [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 316

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 87/194 (44%), Positives = 121/194 (62%), Gaps = 4/194 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +++M+T F R IIV S+LR  +G+   PPN V+I LALF++ +VM P LD+       
Sbjct: 126 PSIILMMTSFTRIIIVLSLLRQAIGLQQTPPNQVLIGLALFLSLFVMRPVLDQINTTAFS 185

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P    +I    AI R       FM   TR+ DL LF D+AH           + I + +L
Sbjct: 186 PYGRGEIQIEEAIMRSGTALHGFMTKQTRKNDLQLFTDLAHHPRYE----NAESIPFTVL 241

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           +PSF+ SEL+ +FEIGFLI LPF+IID++VA  + A+GMMML P  IS PFK++ F+++D
Sbjct: 242 VPSFVTSELKTAFEIGFLIFLPFIIIDIVVACTLTALGMMMLSPQIISAPFKLLLFIMVD 301

Query: 233 GWSLLVENLVKSFI 246
           GW+L V +L  SFI
Sbjct: 302 GWALTVGSLAGSFI 315


>gi|319764505|ref|YP_004128442.1| flagellar biosynthetic protein flip [Alicycliphilus denitrificans
           BC]
 gi|317119066|gb|ADV01555.1| flagellar biosynthetic protein FliP [Alicycliphilus denitrificans
           BC]
          Length = 251

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 89/241 (36%), Positives = 141/241 (58%), Gaps = 4/241 (1%)

Query: 5   CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
           C         +      +L  V+   A  +  +  ++T   FT LS  P +L+M+T F R
Sbjct: 13  CLLIAGAALGQQQGGAGTLPLVVGSGAGGTSYSVPIQTLLFFTALSFLPAVLLMMTGFTR 72

Query: 65  FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
            +IV S+LR  +G    PPN V++ L+LF+T +VM PTLD+  +    P   N ++   A
Sbjct: 73  IVIVLSLLRQAIGTQQAPPNQVVVGLSLFLTLFVMGPTLDKVYQEAYVPYTTNALSFEQA 132

Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
           + +   P   FM   TR+ D +LF  +A      T     +    R+L+P+F+ SEL+ +
Sbjct: 133 LAKAEAPMRGFMLKQTRQSDFTLFARLAKLDEGVT----AETAPLRVLVPAFVTSELKTA 188

Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           F+IGF++ +PFLIIDM+V++++M++GMMML P  ++LPFK++ FVL DGW+LL+ +L  S
Sbjct: 189 FQIGFMVFIPFLIIDMVVSSVLMSLGMMMLSPVLVALPFKLMLFVLADGWNLLIGSLAAS 248

Query: 245 F 245
           F
Sbjct: 249 F 249


>gi|162210056|ref|YP_331659.2| flagellar biosynthesis protein FliP [Burkholderia pseudomallei
           1710b]
          Length = 253

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 97/241 (40%), Positives = 146/241 (60%), Gaps = 6/241 (2%)

Query: 7   FALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPR 64
             + L         + L    + P     +T+   V+T  + T+LS  P +L+M+T F R
Sbjct: 16  ILIGLAPALACAQAAGLPAFNSAPGSNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTR 75

Query: 65  FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
            IIV S+LR  +G  S PPN V++ LALF+T +VMSP LDR+     +P     +    A
Sbjct: 76  IIIVLSLLRQAIGTASTPPNQVLVGLALFLTLFVMSPVLDRAYNDAYKPFSEGTLQMDQA 135

Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
           +QR   PF  FM   TRE DL+LF  ++    +   +   + +   +L+P+F+ SEL+  
Sbjct: 136 VQRGTAPFKAFMLKQTRETDLALFAKIS----KAAPMQGPEDVPLSLLVPAFVTSELKTG 191

Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           F+IGF I +PFLIIDM+VA+++M+MGMMM+ P ++SLPFK++ FVL+DGW LL+ +L +S
Sbjct: 192 FQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATVSLPFKLMLFVLVDGWQLLIGSLAQS 251

Query: 245 F 245
           F
Sbjct: 252 F 252


>gi|241761180|ref|ZP_04759269.1| flagellar biosynthetic protein FliP [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241374799|gb|EER64260.1| flagellar biosynthetic protein FliP [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 316

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 87/194 (44%), Positives = 121/194 (62%), Gaps = 4/194 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +++M+T F R IIV S+LR  +G+   PPN V+I LALF++ +VM P LD+       
Sbjct: 126 PSIILMMTSFTRIIIVLSLLRQAIGLQQTPPNQVLIGLALFLSLFVMRPVLDQINTTAFS 185

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P    +I    AI R       FM   TR+ DL LF D+AH           + I + +L
Sbjct: 186 PYGRGEIQIEEAIMRSGTALHGFMTKQTRKNDLQLFTDLAHHPRYE----NAESIPFTVL 241

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           +PSF+ SEL+ +FEIGFLI LPF+IID++VA  + A+GMMML P  IS PFK++ F+++D
Sbjct: 242 VPSFVTSELKTAFEIGFLIFLPFIIIDIVVACTLTALGMMMLSPQIISAPFKLLLFIMVD 301

Query: 233 GWSLLVENLVKSFI 246
           GW+L V +L  SFI
Sbjct: 302 GWALTVGSLAGSFI 315


>gi|269965693|ref|ZP_06179806.1| Flagellar biosynthetic protein fliP [Vibrio alginolyticus 40B]
 gi|269829761|gb|EEZ83997.1| Flagellar biosynthetic protein fliP [Vibrio alginolyticus 40B]
          Length = 289

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 90/219 (41%), Positives = 135/219 (61%), Gaps = 5/219 (2%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
              P      +  ++   + T+L   P ++I++T F R ++V SILR  MG+   P N V
Sbjct: 74  TTNPDGSEDYSVTLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 133

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           II +ALF+TF+VMSP L+   +  +QP +N Q+T   A      P   FM   TR KDL 
Sbjct: 134 IIGIALFLTFFVMSPVLNEINDKAVQPYLNEQVTAREAFDAAQAPMKAFMLKQTRIKDLE 193

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
            F+ M+        +   + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++
Sbjct: 194 TFVTMSG-----EQVEDPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 248

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MAMGMMML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 249 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287


>gi|317151987|ref|YP_004120035.1| flagellar biosynthetic protein FliP [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316942238|gb|ADU61289.1| flagellar biosynthetic protein FliP [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 256

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 98/246 (39%), Positives = 144/246 (58%), Gaps = 9/246 (3%)

Query: 5   CFFALFLVTPELVFAKSSLHDVMNI-----PADLSISTWIVRTFGIFTILSIAPILLIMV 59
           C F    + P L  A+  +   + +      A+    + ++    + T+LS+AP +++ +
Sbjct: 14  CLFGALALFPALSLAQDPVIPKLTMELAAGQAEPGEVSTLLEILFLLTVLSMAPAIMLTM 73

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R IIVF  LR  MG   +PPN ++  LA+FMT  +M P         +QP +  +I
Sbjct: 74  TSFTRIIIVFHFLRQAMGTQQMPPNQILAGLAIFMTVVIMMPVGKAINSTALQPYLAEEI 133

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
               A++R   P   FM  +TREKDLS+F  +      N      D +   +L+ ++ IS
Sbjct: 134 RFDEALERAQVPIREFMFKHTREKDLSIFYSITKEERPN----NRDEVNTIMLVAAYTIS 189

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+  F IGFLI +PFLI+DM+VA+I++AMGMMMLPP  ISLPFK++ FVLIDGW+LLV 
Sbjct: 190 ELKTGFTIGFLIYIPFLILDMVVASILLAMGMMMLPPVMISLPFKILLFVLIDGWNLLVG 249

Query: 240 NLVKSF 245
           +LV +F
Sbjct: 250 SLVNTF 255


>gi|126175118|ref|YP_001051267.1| flagellar biosynthesis protein FliP [Shewanella baltica OS155]
 gi|153001442|ref|YP_001367123.1| flagellar biosynthesis protein FliP [Shewanella baltica OS185]
 gi|125998323|gb|ABN62398.1| flagellar biosynthetic protein FliP [Shewanella baltica OS155]
 gi|151366060|gb|ABS09060.1| flagellar biosynthetic protein FliP [Shewanella baltica OS185]
          Length = 248

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 94/247 (38%), Positives = 145/247 (58%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIM 58
           ++      + L  P    A   L  V         + + V  +   + T LS  P +LIM
Sbjct: 5   ILALVGLVILLCMPSAWAADGVLPAVTVTTGPDGSTEYSVTMQILLLMTSLSFLPAMLIM 64

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIV SILR  +G+   P N V+I ++LFMTF++M+P  DR  + G++P +  Q
Sbjct: 65  LTSFTRIIIVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDRIYDEGVKPYIEEQ 124

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           +T   A ++  EP   FM    R  DL  F++++       +I   +     +LIP+F+ 
Sbjct: 125 LTLQQAFEKGKEPLKGFMLGQVRTTDLKTFIEISGYK----NIKSPEEAPMSVLIPAFIT 180

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P  +SLPFK++ FVL+DGWSL++
Sbjct: 181 SELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVL 240

Query: 239 ENLVKSF 245
             L  SF
Sbjct: 241 GTLANSF 247


>gi|292493587|ref|YP_003529026.1| flagellar biosynthetic protein FliP [Nitrosococcus halophilus Nc4]
 gi|291582182|gb|ADE16639.1| flagellar biosynthetic protein FliP [Nitrosococcus halophilus Nc4]
          Length = 269

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 94/231 (40%), Positives = 144/231 (62%), Gaps = 4/231 (1%)

Query: 15  ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74
            L         V    +     T  ++  G+ T L++ P  ++M+T F R I+V SILR 
Sbjct: 39  GLAAPGVPALAVTTEGSGEQTYTVTLQILGLMTALTLLPAAVMMMTSFTRIIVVLSILRQ 98

Query: 75  GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134
            +G+   P + ++I L LF+TF++M P LD++ + G++P +  +I+ T A+ R  EPF  
Sbjct: 99  ALGLAQTPSSQILIGLTLFLTFFIMGPVLDKAYQEGVRPYLQEEISVTEALVRTREPFRH 158

Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
           FM   TRE DL LF ++A      +       + + +L+P+F+ SEL+ +F+IGFL+ +P
Sbjct: 159 FMMAQTRETDLQLFAEIAGQKAFESPAQ----VPFSLLVPAFITSELKTAFQIGFLLFIP 214

Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           FLIID++VA+++MAMGMMML P  +SLPFK++ FVLIDGWSLL+  L  SF
Sbjct: 215 FLIIDLVVASVLMAMGMMMLSPMLVSLPFKLLLFVLIDGWSLLMGTLASSF 265


>gi|218658525|ref|ZP_03514455.1| flagellar biosynthesis protein FliP [Rhizobium etli IE4771]
          Length = 238

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 139/206 (67%), Positives = 177/206 (85%), Gaps = 2/206 (0%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +RTFG+ TILS+AP +LIMVT FPRF+I FSILR+GMG+ S P N++++SL+LFMTFYVM
Sbjct: 34  IRTFGLLTILSVAPGILIMVTSFPRFVIAFSILRSGMGLSSTPSNMILLSLSLFMTFYVM 93

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SPT D++ + G+QPL+ NQI ET A+QR+AEPF  FM  NTR+KDL+LF+D+A    R  
Sbjct: 94  SPTFDQAWQSGVQPLLANQINETEAVQRIAEPFRTFMAANTRDKDLALFVDLAR--ERGQ 151

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           +I  +D I+YR+LIP+FMISE+RR FEIGFL++LPFL+ID+IVATI MAMGMMMLPPTSI
Sbjct: 152 NIQTSDPIDYRVLIPAFMISEIRRGFEIGFLVVLPFLVIDLIVATITMAMGMMMLPPTSI 211

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++FFVLIDGW+LLV +LV+SF
Sbjct: 212 SLPFKILFFVLIDGWNLLVGSLVRSF 237


>gi|189426339|ref|YP_001953516.1| flagellar biosynthesis protein FliP [Geobacter lovleyi SZ]
 gi|189422598|gb|ACD96996.1| flagellar biosynthetic protein FliP [Geobacter lovleyi SZ]
          Length = 256

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 94/224 (41%), Positives = 145/224 (64%), Gaps = 4/224 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           SL+  +      +     ++ F + T+LS+AP LLIM T F R ++V S LRT +G    
Sbjct: 36  SLNIGVGTATKPAEVATTIQIFLLLTVLSLAPSLLIMTTSFTRIVVVLSFLRTALGTQQA 95

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           P N +I++L+LF+TF++M+P   +      QP     +++  A ++  +P   FM + TR
Sbjct: 96  PSNQIILALSLFLTFFIMTPVWQQVNRDAYQPYKAGTLSQEQAFEKAVQPVRKFMLSQTR 155

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           EKDL LF+ ++  +         D I    ++P+FMISELR +F+IGFLI +PF+++DM+
Sbjct: 156 EKDLGLFVSLSKQARPK----NADDIPTLTIVPAFMISELRTAFQIGFLIYIPFIVVDMV 211

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           VA+++M+MGMMMLPP  ISLPFK++ FVL+DGW L++ +LVKSF
Sbjct: 212 VASVLMSMGMMMLPPVMISLPFKILLFVLVDGWGLVISSLVKSF 255


>gi|260886649|ref|ZP_05897912.1| flagellar biosynthetic protein FliP [Selenomonas sputigena ATCC
           35185]
 gi|260863792|gb|EEX78292.1| flagellar biosynthetic protein FliP [Selenomonas sputigena ATCC
           35185]
          Length = 251

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 95/224 (42%), Positives = 143/224 (63%), Gaps = 4/224 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           SL   +   A        ++   + TILS+ P +L+M T F R ++V   LR  M   +V
Sbjct: 31  SLSVNVGEAAGPQDVATSLQILALLTILSLVPSILVMTTSFVRIVVVIGFLRNAMSTQNV 90

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PPN V+++L+LF+TFY+M P    + + GIQP +  QIT+  AI     P   FM   TR
Sbjct: 91  PPNQVVLALSLFLTFYIMQPYWSEANQQGIQPYLAGQITQEQAIDNTLAPLREFMFRQTR 150

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           E DL+LF++++ +    +       +    LIP+F+ISEL+ +F+IGF+I +PF++IDMI
Sbjct: 151 ESDLALFVNLSDAERPESQA----DVSTATLIPAFVISELKTAFQIGFMIYIPFIVIDMI 206

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           VA+ +M+MGMMMLPP  ISLPFK++ FV++DGW LL+++L+ SF
Sbjct: 207 VASTLMSMGMMMLPPVMISLPFKILLFVMVDGWHLLIKSLIMSF 250


>gi|254228442|ref|ZP_04921868.1| flagellar biosynthetic protein FliP, putative [Vibrio sp. Ex25]
 gi|262393598|ref|YP_003285452.1| flagellar biosynthesis protein FliP [Vibrio sp. Ex25]
 gi|151939030|gb|EDN57862.1| flagellar biosynthetic protein FliP, putative [Vibrio sp. Ex25]
 gi|262337192|gb|ACY50987.1| flagellar biosynthesis protein FliP [Vibrio sp. Ex25]
          Length = 289

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 90/219 (41%), Positives = 135/219 (61%), Gaps = 5/219 (2%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
              P      +  ++   + T+L   P ++I++T F R ++V SILR  MG+   P N V
Sbjct: 74  TTNPDGSEDYSVTLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 133

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           II +ALF+TF+VMSP L+   +  +QP +N Q+T   A      P   FM   TR KDL 
Sbjct: 134 IIGIALFLTFFVMSPVLNEINDKAVQPYLNEQVTAREAFDAAQAPMKAFMLKQTRIKDLE 193

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
            F+ M+        +   + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++
Sbjct: 194 TFVTMSG-----EQVENPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 248

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MAMGMMML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 249 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287


>gi|300311365|ref|YP_003775457.1| flagellar biosynthetic protein FliP [Herbaspirillum seropedicae
           SmR1]
 gi|300074150|gb|ADJ63549.1| flagellar biosynthetic protein FliP precursor protein
           [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 96/228 (42%), Positives = 147/228 (64%), Gaps = 6/228 (2%)

Query: 20  KSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMG 77
           +  +  + ++PA    + +   ++T  + T LS  P  L+M+TCF R +IV S+LR  +G
Sbjct: 20  QQGIPALNSMPAPGGGTNYSLPIQTMLLLTSLSFLPAALLMMTCFTRIVIVLSLLRQALG 79

Query: 78  MGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMR 137
             S PP  V++ L+LF+TF+VMSP  DR      QP   N+I    A+ + A+P   FM 
Sbjct: 80  TQSTPPTQVLVGLSLFLTFFVMSPVFDRIYTDAYQPFAENKIQMMEALDKGAQPLKEFML 139

Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197
             TRE DL+L++ ++    R   +   + +  R+L+P+F+ SEL+ +F+IGF I LPFLI
Sbjct: 140 KQTRESDLALYVKLS----RGPALQGPEDVPLRLLVPAFVTSELKTAFQIGFAIFLPFLI 195

Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IDM+VA+I+M+MGMMM+ P  +SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 196 IDMVVASILMSMGMMMMSPALVSLPFKLMLFVLVDGWQLLIGSLAQSF 243


>gi|323705431|ref|ZP_08117006.1| flagellar biosynthetic protein FliP [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535333|gb|EGB25109.1| flagellar biosynthetic protein FliP [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 249

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 97/245 (39%), Positives = 157/245 (64%), Gaps = 8/245 (3%)

Query: 4   YCFFALFLVTPELVFAK---SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           +    L ++  +  +A    +S    +N P+  +     ++   + T+L++AP +LIM+T
Sbjct: 9   WLVLVLPILLTQNAYAAPNNASSLITVNAPSTSNEVASSIQIVLLLTVLTLAPSILIMMT 68

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R I+V S LR  +G+  +PPN V+I LALF+TF++M+P   +  +  IQP M  +IT
Sbjct: 69  SFTRIIVVLSFLRNALGLQQMPPNQVLIGLALFLTFFIMAPVGSQINKDSIQPYMQGKIT 128

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A  +  +P   FM   TR+ DL+LF++++        +   + +  R++IPSF+ISE
Sbjct: 129 PQEAYVKARDPLKNFMLKQTRKNDLNLFINLSKLK-----VKSVNDVPLRVVIPSFIISE 183

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +FEIGF+I +PFLIIDM+VA+++M+MGM MLPP  ISLPFK++ F+L+DGW++L ++
Sbjct: 184 LKTAFEIGFIIYIPFLIIDMVVASVLMSMGMFMLPPVLISLPFKLLLFILVDGWNILAKS 243

Query: 241 LVKSF 245
           LV  F
Sbjct: 244 LVIGF 248


>gi|270262391|ref|ZP_06190662.1| flagellar biosynthetic protein FliP [Serratia odorifera 4Rx13]
 gi|270043075|gb|EFA16168.1| flagellar biosynthetic protein FliP [Serratia odorifera 4Rx13]
          Length = 241

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 97/244 (39%), Positives = 155/244 (63%), Gaps = 9/244 (3%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTC 61
           +    L LV+P    A + L  +++ P      +W   V+T  + T LS  P +L+M+T 
Sbjct: 3   WLAATLLLVSPA---ALAQLPGLISQPLADGGQSWSLPVQTLVLLTSLSFLPAMLLMMTS 59

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F R IIV  +LR  +G  S PPN V++ LALF+TF++MSP  D+  +    P   ++I+ 
Sbjct: 60  FTRIIIVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISL 119

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
             A+ + ++P   FM   TRE DL+L+  +A+       +   + +  RIL+P+++ SEL
Sbjct: 120 DAALDKGSQPLREFMLRQTRETDLALYARLANQP----PLAGPEAVPMRILLPAYVTSEL 175

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
           + +F+IGF + +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L
Sbjct: 176 KTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSL 235

Query: 242 VKSF 245
            +SF
Sbjct: 236 AQSF 239


>gi|332140592|ref|YP_004426330.1| flagellar biosynthesis protein FliP [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327550614|gb|AEA97332.1| flagellar biosynthesis protein FliP [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 251

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 92/233 (39%), Positives = 143/233 (61%), Gaps = 5/233 (2%)

Query: 15  ELVFAKSSLHDVMNIPADLSIS--TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72
           E V+A+  +  V            T  ++   I T LS+ P  ++M+T F R I+V SIL
Sbjct: 18  EPVYAQQGISAVTVTTNQDGSQDYTMTLQALFIMTALSLIPAFIMMMTSFTRIIVVLSIL 77

Query: 73  RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132
           R  +G+   P N ++I ++LF++ ++M+P  +   E  +QP +N Q+T   A+++   P 
Sbjct: 78  RQAIGLQQSPSNQILIGVSLFLSMFIMAPVFEEVNERALQPYLNEQLTSLDALEQAKGPM 137

Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192
             FM + TR KDL  F+ +A    +  D    D +   ILIP+F+ SEL+ +F+IGF++ 
Sbjct: 138 RAFMLSQTRVKDLETFVRIAGDEGKYAD---TDEVPLTILIPAFVTSELKTAFQIGFMLF 194

Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +PFLIID++VA+I+MAMGMMML P  +SLPFK++ FVL+DGW+L+   L  SF
Sbjct: 195 IPFLIIDLVVASILMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLIFGTLATSF 247


>gi|307264883|ref|ZP_07546445.1| flagellar biosynthetic protein FliP [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|326389467|ref|ZP_08211034.1| flagellar biosynthetic protein FliP [Thermoanaerobacter ethanolicus
           JW 200]
 gi|306920141|gb|EFN50353.1| flagellar biosynthetic protein FliP [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|325994472|gb|EGD52897.1| flagellar biosynthetic protein FliP [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 221

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 94/223 (42%), Positives = 145/223 (65%), Gaps = 5/223 (2%)

Query: 23  LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82
           L D ++     S     ++   + T+L++AP +LIM+T F R ++V S LR  +G+  +P
Sbjct: 3   LGDWVSSVTAPSNIATSLQIVLLLTVLTLAPSILIMMTSFTRIVVVLSFLRNALGLQQMP 62

Query: 83  PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142
           PN V+I LALF+T Y+M+P         I+P    +IT+  A Q   +P   FM   TR+
Sbjct: 63  PNQVLIGLALFLTLYIMAPVGQDINNNAIKPYTEGKITQEEAYQNAIKPLKNFMLKQTRQ 122

Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202
            DL+LF+ +A        +   + +  R++IPSF+ISEL+ +FEIGF+I +PFLIID++V
Sbjct: 123 SDLNLFVSLAKIK-----VNNAEDLPMRVVIPSFIISELKTAFEIGFIIYIPFLIIDIVV 177

Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           A+++M+MGM MLPP  ISLPFKV+ F+L+DGW+L+V++L+  F
Sbjct: 178 ASVLMSMGMFMLPPVLISLPFKVLLFILVDGWNLVVKSLILGF 220


>gi|295696128|ref|YP_003589366.1| flagellar biosynthetic protein FliP [Bacillus tusciae DSM 2912]
 gi|295411730|gb|ADG06222.1| flagellar biosynthetic protein FliP [Bacillus tusciae DSM 2912]
          Length = 264

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 94/225 (41%), Positives = 149/225 (66%), Gaps = 4/225 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
            L   +   +        ++   + T+LS+AP +L+M+T F R I+V S +R+ + +   
Sbjct: 44  GLPSTLQPDSSPQGVAGTLQLILLITVLSLAPGILVMITSFTRMIVVLSFVRSALAVQQT 103

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PPN V+I LAL +TF+VM+PTL +  +  +QP +  ++T+T AI R   PF  FM   TR
Sbjct: 104 PPNQVLIGLALALTFFVMAPTLSQVNQQAVQPYLRGELTQTQAIARAEVPFKHFMAKQTR 163

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           EKDL LF+D  + +  +    + + I   +L+P++ ISEL+ +FEIGF+I +PFLIIDM+
Sbjct: 164 EKDLQLFLDYRNVALPD----RVEDIPMSLLVPAYTISELKTAFEIGFMIFIPFLIIDMV 219

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +++++MAMGMMMLPP  +SLPFK++ FVL DGW L+V++L+  ++
Sbjct: 220 ISSVLMAMGMMMLPPVIVSLPFKILLFVLADGWYLIVKSLLAGYV 264


>gi|322382378|ref|ZP_08056285.1| flagellar biosynthesis protein FliP [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321153731|gb|EFX46106.1| flagellar biosynthesis protein FliP [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 255

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 92/221 (41%), Positives = 150/221 (67%), Gaps = 4/221 (1%)

Query: 25  DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
           D+      ++ ++  V    + T+LS+AP  LI++T F R +IV   +RT +G   +PPN
Sbjct: 37  DIKVGGDSVNGASSTVTILLLLTVLSLAPAFLILMTSFTRIVIVLGFVRTSLGTQQMPPN 96

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
            V++ LALF+T ++M+PTL    ++ +QP +  ++ +T A+++ AEP   FM ++TR KD
Sbjct: 97  QVLVGLALFLTLFIMAPTLGDINQVAVQPYIKGELNQTQALEKAAEPIKKFMWSHTRPKD 156

Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
           L LF+D +++   N      +      L+P+F ISEL+ +F++GF+I +PFL+IDMI+++
Sbjct: 157 LQLFLDYSNAEKPN----GPEDTPIAALVPAFAISELKTAFQMGFMIFIPFLVIDMIISS 212

Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            +MAMGMMMLPP  ISLPFK++ FVL+DGW L+V++L+ S+
Sbjct: 213 TLMAMGMMMLPPVMISLPFKILLFVLVDGWYLVVKSLLVSY 253


>gi|260772332|ref|ZP_05881248.1| flagellar biosynthesis protein FliP [Vibrio metschnikovii CIP
           69.14]
 gi|260611471|gb|EEX36674.1| flagellar biosynthesis protein FliP [Vibrio metschnikovii CIP
           69.14]
          Length = 299

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 90/219 (41%), Positives = 140/219 (63%), Gaps = 5/219 (2%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
                     +  ++   + T+L   P ++I++T F R ++V SILR  MG+   P N V
Sbjct: 84  TTNADGGEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 143

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           II +A+F+TF++MSP L++  +  +QP +N QI+   A     +P   FM   TR KDL 
Sbjct: 144 IIGIAIFLTFFIMSPVLNQINDQAVQPYLNEQISARQAFDLAQDPMKSFMLKQTRLKDLE 203

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
            F+++A S+ +N      + +   ILIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++
Sbjct: 204 TFVNIAGSNAQN-----PEDVSMAILIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 258

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MAMGMMML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 259 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297


>gi|91223555|ref|ZP_01258820.1| flagellar biosynthesis protein P [Vibrio alginolyticus 12G01]
 gi|91191641|gb|EAS77905.1| flagellar biosynthesis protein P [Vibrio alginolyticus 12G01]
          Length = 289

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 90/219 (41%), Positives = 135/219 (61%), Gaps = 5/219 (2%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
              P      +  ++   + T+L   P ++I++T F R ++V SILR  MG+   P N V
Sbjct: 74  TTNPDGSEDYSVTLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 133

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           II +ALF+TF+VMSP L+   +  +QP +N Q+T   A      P   FM   TR KDL 
Sbjct: 134 IIGIALFLTFFVMSPVLNEINDKAVQPYLNEQVTAREAFDAAQAPMKAFMLKQTRIKDLE 193

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
            F+ M+        +   + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++
Sbjct: 194 TFVTMSG-----EQVENPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 248

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MAMGMMML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 249 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287


>gi|32266191|ref|NP_860223.1| flagellar biosynthesis protein FliP [Helicobacter hepaticus ATCC
           51449]
 gi|32262241|gb|AAP77289.1| flagellar basal body protein FliP [Helicobacter hepaticus ATCC
           51449]
          Length = 265

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 98/224 (43%), Positives = 147/224 (65%), Gaps = 4/224 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           S+   +  P + +     +    I T+L IAP L++++T F R +IVF+ LRT +G    
Sbjct: 45  SVDLSLTAPKEPTELVATLNIVLIITLLVIAPSLVLVMTSFTRIVIVFAFLRTALGTQQS 104

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PP  V++SLAL +TF++M P   +S E+GI+P    +I+   A +R   PF  FM  NTR
Sbjct: 105 PPTQVLVSLALILTFFIMEPVATKSYEVGIKPYAEKKISYDEAFERAIVPFKDFMIKNTR 164

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           EKDL+LF  +    +        + +   +L+P+FMISEL+ +F IGFL+ LPFL+IDM+
Sbjct: 165 EKDLALFFRIRQLENP----QSVNDVPLTVLLPAFMISELKTAFWIGFLLYLPFLVIDMV 220

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +++++MAMGMMMLPP  ISLPFK++ F+L+DGW+LL+ NLV+ F
Sbjct: 221 ISSVLMAMGMMMLPPVMISLPFKILVFILVDGWNLLIGNLVQGF 264


>gi|170722844|ref|YP_001750532.1| flagellar biosynthesis protein FliP [Pseudomonas putida W619]
 gi|169760847|gb|ACA74163.1| flagellar biosynthetic protein FliP [Pseudomonas putida W619]
          Length = 255

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 97/220 (44%), Positives = 140/220 (63%), Gaps = 4/220 (1%)

Query: 26  VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
           + N P      +  ++   I T LS  P  +I++T F R IIVFSILR  +G+   P N 
Sbjct: 37  LSNGPDGQQEYSVSLQILLIMTALSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQ 96

Query: 86  VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145
           V+  +ALF+T ++M+P  DR  +  +QP +  Q+T   AI +   P   FM   TR+ DL
Sbjct: 97  VLTGMALFLTMFIMAPVFDRVNQDALQPYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDL 156

Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
            LFM ++    + TDI   D +   IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA++
Sbjct: 157 DLFMRLS----KRTDIAGPDQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASV 212

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +MAMGMMML P  ISLPFK++ FVL+DGW+L++  L  SF
Sbjct: 213 LMAMGMMMLSPLIISLPFKIMLFVLVDGWALIMGTLAGSF 252


>gi|42524694|ref|NP_970074.1| flagellar biosynthesis protein FliP [Bdellovibrio bacteriovorus
           HD100]
 gi|39576904|emb|CAE78133.1| flagellar protein required for flagellar formation [Bdellovibrio
           bacteriovorus HD100]
          Length = 252

 Score =  209 bits (533), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 100/234 (42%), Positives = 150/234 (64%), Gaps = 7/234 (2%)

Query: 15  ELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
              FA+ +L  +        + +     V+   + T+L++AP +LIM+T F R IIV S 
Sbjct: 22  SSAFAQVTLPTMNLGFKTTDNPNEVVNAVKLIMVMTVLTLAPAILIMMTGFTRIIIVLSF 81

Query: 72  LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
           LR  MG+  +PPN +++ LALF+TF+VM P  +     GIQP M   I++  AI+R   P
Sbjct: 82  LRQAMGVQQMPPNQLLVGLALFLTFFVMQPAFNEMNTNGIQPYMAGTISQDQAIERTFAP 141

Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
              FM N TR+ DL+LF+ ++      T       +   +L+P+F++SEL+ +F+IGF+I
Sbjct: 142 LRKFMFNQTRDSDLALFIKLSKVEKPKTRA----DVPTMVLVPAFVVSELKTAFQIGFII 197

Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            LPFL+ID++ A+++MAMGMMMLPP  ISLPFK++ FVL+DGW LL+ ++VKSF
Sbjct: 198 FLPFLVIDIVAASVLMAMGMMMLPPVVISLPFKIMLFVLVDGWGLLIGSMVKSF 251


>gi|163849877|ref|YP_001637920.1| flagellar biosynthetic protein FliP [Methylobacterium extorquens
           PA1]
 gi|163661482|gb|ABY28849.1| flagellar biosynthetic protein FliP [Methylobacterium extorquens
           PA1]
          Length = 253

 Score =  209 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 102/215 (47%), Positives = 152/215 (70%), Gaps = 4/215 (1%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
                +   ++   + T+L++AP +L+M T F R ++V SILR+ +G  + PPN V++SL
Sbjct: 41  GAGGTTERALQLVALITVLALAPSVLVMATSFTRIVVVLSILRSALGTQTAPPNTVMVSL 100

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           ALF+T +VM+PT   +   G++PLM  QI+++ A +R + PF  FM  N REKDL LF+D
Sbjct: 101 ALFLTAFVMAPTAREAYRTGVEPLMAGQISQSQAFERASAPFKTFMLRNVREKDLKLFLD 160

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           MA            + I   I+ P+FMISELRR+FEIGFL+ +PFLIID++VA+++MAMG
Sbjct: 161 MARQPAP----AGPEAIGLEIVTPAFMISELRRAFEIGFLLFIPFLIIDLVVASVLMAMG 216

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMMLPP +++LPFK+IFFVL+DGW+L+  +L++S+
Sbjct: 217 MMMLPPATVALPFKLIFFVLVDGWTLVAGSLIQSY 251


>gi|332994111|gb|AEF04166.1| flagellar biosynthesis protein FliP [Alteromonas sp. SN2]
          Length = 252

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 92/244 (37%), Positives = 145/244 (59%), Gaps = 5/244 (2%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSIS--TWIVRTFGIFTILSIAPILLIMVTC 61
           +       V  E   A+  +  V  +  D      T  ++   I T LS+ P  ++M+T 
Sbjct: 8   FFVVLASWVIAEPALAQQGISAVTVVTNDDGSQDYTMTLQALFIMTALSLIPAFIMMMTS 67

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F R I+V SILR  +G+   P N +++ ++LF++ ++M+P  +   E  +QP ++ Q+T 
Sbjct: 68  FTRIIVVLSILRQAIGLQQSPSNQILVGVSLFLSMFIMAPVFEEINERALQPYLSEQMTS 127

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
             AI++   P   FM + TR KDL  F+ +A    +  D    D +   ILIP+F+ SEL
Sbjct: 128 LDAIEQAKGPMRAFMLSQTRVKDLETFVRIAGDEGKYAD---TDEVPLTILIPAFVTSEL 184

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
           + +F+IGF++ +PFLIID++VA+I+MAMGMMML P  +SLPFK++ FVL+DGW+L+   L
Sbjct: 185 KTAFQIGFMLFIPFLIIDLVVASILMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLIFGTL 244

Query: 242 VKSF 245
             SF
Sbjct: 245 ATSF 248


>gi|56551543|ref|YP_162382.1| flagellar biosynthesis protein FliP [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|56543117|gb|AAV89271.1| flagellar biosynthetic protein FliP [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 316

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 87/194 (44%), Positives = 121/194 (62%), Gaps = 4/194 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +++M+T F R IIV S+LR  +G+   PPN V+I LALF++ +VM P LD+       
Sbjct: 126 PSIILMMTSFTRIIIVLSLLRQAIGLQQTPPNQVLIGLALFLSLFVMRPVLDQINTTAFS 185

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P    +I    AI R       FM   TR+ DL LF D+AH           + I + +L
Sbjct: 186 PYGRGEIQIEEAIMRSGTALHGFMTKQTRKNDLQLFTDLAHHPRYE----NAESIPFTVL 241

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           +PSF+ SEL+ +FEIGFLI LPF+IID++VA  + A+GMMML P  IS PFK++ F+++D
Sbjct: 242 VPSFVTSELKTAFEIGFLIFLPFIIIDIVVACTLTALGMMMLSPQIISAPFKLLLFIMVD 301

Query: 233 GWSLLVENLVKSFI 246
           GW+L V +L  SFI
Sbjct: 302 GWALTVGSLAGSFI 315


>gi|256059603|ref|ZP_05449801.1| flagellar biosynthesis protein FliP [Brucella neotomae 5K33]
 gi|261323570|ref|ZP_05962767.1| flagellar biosynthetic protein FliP [Brucella neotomae 5K33]
 gi|261299550|gb|EEY03047.1| flagellar biosynthetic protein FliP [Brucella neotomae 5K33]
          Length = 246

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 131/240 (54%), Positives = 176/240 (73%), Gaps = 4/240 (1%)

Query: 7   FALFLVTPELVFAKSSLHDVMNIPAD-LSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65
             L L       A+ +L     +PA   + S  IV+ FG+ T+LSIAP LLIMVT F RF
Sbjct: 9   VILTLALTVSAQAQQALPLDKLLPAGSGAASGQIVQLFGLLTVLSIAPGLLIMVTSFTRF 68

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
            I FS+LR+G+G+ + P ++V+ISLALFMTFYVM+PT DR+   G+QPLM N+IT+  A 
Sbjct: 69  AIAFSLLRSGLGLQTAPASMVMISLALFMTFYVMAPTFDRAWNNGVQPLMRNEITQEAAF 128

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
             +++PF  FM    R+KDL LF D+A  S R +D      +++R+L+P+FMISELRR F
Sbjct: 129 GEISQPFREFMMAQVRDKDLRLFEDLADPSFRTSDDGI---VDFRVLVPAFMISELRRGF 185

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           EIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW++LV +L++SF
Sbjct: 186 EIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245


>gi|225181595|ref|ZP_03735036.1| flagellar biosynthetic protein FliP [Dethiobacter alkaliphilus AHT
           1]
 gi|225167703|gb|EEG76513.1| flagellar biosynthetic protein FliP [Dethiobacter alkaliphilus AHT
           1]
          Length = 257

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 95/250 (38%), Positives = 155/250 (62%), Gaps = 11/250 (4%)

Query: 2   IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFG------IFTILSIAPIL 55
           +    F   L  P  + A+  L    N+  D+  +T   +  G      + T+L++ P  
Sbjct: 12  LSAVLFIGILFLPSRLGAEP-LPFPTNVNIDIGTATEPEQVVGSLQLLMLLTVLTLVPAF 70

Query: 56  LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115
           L ++T F R ++V   +R  +     PPN VII LALF+TF++M+P   +  E  IQP +
Sbjct: 71  LALMTSFTRIVVVLGFVRNALATQQTPPNQVIIGLALFLTFFIMAPIYTQVNETAIQPYL 130

Query: 116 NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPS 175
             +IT+  A+   A+P   FM + TREKDL+LF+++++     T     D +   +L+P+
Sbjct: 131 EEEITQEEALAIGAQPLREFMFHQTREKDLALFVNISNGERPET----RDDVPMHVLVPA 186

Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235
           F+ISEL+ +F++GF++ +PF+IIDM+VA+ +M+MGM MLPP  +SLPFK++ FV++DGW 
Sbjct: 187 FVISELKTAFQMGFMLFIPFVIIDMVVASTLMSMGMFMLPPVMVSLPFKLLLFVMVDGWH 246

Query: 236 LLVENLVKSF 245
           L+V++LV+SF
Sbjct: 247 LVVKSLVESF 256


>gi|118581840|ref|YP_903090.1| flagellar biosynthesis protein FliP [Pelobacter propionicus DSM
           2379]
 gi|118504550|gb|ABL01033.1| flagellar biosynthetic protein FliP [Pelobacter propionicus DSM
           2379]
          Length = 257

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 103/224 (45%), Positives = 145/224 (64%), Gaps = 4/224 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           SL   +         T  ++ F + TILS+AP LLIM T F R ++V S LRT MG    
Sbjct: 37  SLSIGVGTATKPGEFTTTIQIFFLLTILSLAPGLLIMTTAFTRIVVVLSFLRTAMGTQGA 96

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           P N VI+ L++F+TF++MSP   +      QP    QI++T AI R   P   FM + TR
Sbjct: 97  PSNQVILGLSMFLTFFIMSPVWQQINNEAYQPWKAQQISQTIAIDRAIMPVRRFMLSQTR 156

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           EKDL+LF+ +++           + I    +IP+FMISELR +F+IGFLI +PF+++DM+
Sbjct: 157 EKDLALFVSLSNLPRPK----NANDIPTLTIIPAFMISELRTAFQIGFLIYIPFIVVDMV 212

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           VA+++M+MGMMMLPP  ISLPFK++ FVL+DGW L++ +LVKSF
Sbjct: 213 VASVLMSMGMMMLPPVMISLPFKILLFVLVDGWGLVISSLVKSF 256


>gi|304409949|ref|ZP_07391568.1| flagellar biosynthetic protein FliP [Shewanella baltica OS183]
 gi|307302338|ref|ZP_07582096.1| flagellar biosynthetic protein FliP [Shewanella baltica BA175]
 gi|304351358|gb|EFM15757.1| flagellar biosynthetic protein FliP [Shewanella baltica OS183]
 gi|306914376|gb|EFN44797.1| flagellar biosynthetic protein FliP [Shewanella baltica BA175]
          Length = 248

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 93/247 (37%), Positives = 145/247 (58%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIM 58
           ++      + L  P    A   L  V         + + V  +   + T LS  P +LIM
Sbjct: 5   ILALVGLVILLCMPSAWAADGVLPAVTVTTGPDGSTEYSVTMQILLLMTSLSFLPAMLIM 64

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIV SILR  +G+   P N V+I ++LFMTF++M+P  +R  + G++P +  Q
Sbjct: 65  LTSFTRIIIVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFERIYDEGVKPYIEEQ 124

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           +T   A ++  EP   FM    R  DL  F++++       +I   +     +LIP+F+ 
Sbjct: 125 LTLQQAFEKGKEPLKGFMLGQVRTTDLKTFIEISGYK----NIKSPEEAPMSVLIPAFIT 180

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P  +SLPFK++ FVL+DGWSL++
Sbjct: 181 SELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVL 240

Query: 239 ENLVKSF 245
             L  SF
Sbjct: 241 GTLANSF 247


>gi|90579937|ref|ZP_01235745.1| flagellar biosynthesis protein [Vibrio angustum S14]
 gi|90438822|gb|EAS64005.1| flagellar biosynthesis protein [Vibrio angustum S14]
          Length = 282

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 94/221 (42%), Positives = 139/221 (62%), Gaps = 5/221 (2%)

Query: 25  DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
            V   P      +  ++   + T L   P ++I++T F R ++V SILR  MG+   P N
Sbjct: 65  SVTVNPDGSEDYSVTLQILALMTALGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSN 124

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
            VII +ALF+TF+VMSP +D+     +QP +N QIT   A+ +  +P   FM   TR KD
Sbjct: 125 QVIIGIALFLTFFVMSPVIDKINANAVQPYINEQITAKEALAKAEDPMRQFMLKQTRVKD 184

Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
           L  F++M+ S+           +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+
Sbjct: 185 LETFVNMSGST-----ADDPQTVPLTVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVAS 239

Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           I+MAMGMMML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 240 ILMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 280


>gi|169831899|ref|YP_001717881.1| flagellar biosynthetic protein FliP [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638743|gb|ACA60249.1| flagellar biosynthetic protein FliP [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 260

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 99/244 (40%), Positives = 152/244 (62%), Gaps = 9/244 (3%)

Query: 6   FFALFLVTPELVFAKS----SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
            +AL  ++P   +A+     S+   +  P   +     VR     T++S+ P  L+MVT 
Sbjct: 21  LWALGGLSPSAAWAQPVPIPSIELTIGEPESPAEVVSSVRLLLFLTVISLLPAFLVMVTS 80

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F R ++V + LR G+G+   PP  V+I LALF+T ++M+P   +  E  I+P +  +I +
Sbjct: 81  FTRIVVVLAFLRAGLGIYQAPPGSVLIGLALFLTVFIMAPVYAQVNEQAIEPFLRGEIDQ 140

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
             A +R A P   FM  +TREKDL LF+ MA   +        + +   ++IP+F+ISEL
Sbjct: 141 VEAQERAAGPLREFMLRHTREKDLDLFVRMAEIENP-----VPNELPLTVVIPAFIISEL 195

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
           + +F +GF++ LPFLIIDM+VA+I+++MGM MLPP  ISLPFK++ FVL+DGW L+V +L
Sbjct: 196 KTAFTMGFMLYLPFLIIDMVVASILLSMGMFMLPPVMISLPFKLLLFVLVDGWYLVVRSL 255

Query: 242 VKSF 245
           V+SF
Sbjct: 256 VESF 259


>gi|167464152|ref|ZP_02329241.1| flagellar biosynthesis protein FliP [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 257

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 92/221 (41%), Positives = 150/221 (67%), Gaps = 4/221 (1%)

Query: 25  DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
           D+      ++ ++  V    + T+LS+AP  LI++T F R +IV   +RT +G   +PPN
Sbjct: 39  DIKVGGDSVNGASSTVTILLLLTVLSLAPAFLILMTSFTRIVIVLGFVRTSLGTQQMPPN 98

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
            V++ LALF+T ++M+PTL    ++ +QP +  ++ +T A+++ AEP   FM ++TR KD
Sbjct: 99  QVLVGLALFLTLFIMAPTLGDINQVAVQPYIKGELNQTQALEKAAEPIKKFMWSHTRPKD 158

Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
           L LF+D +++   N      +      L+P+F ISEL+ +F++GF+I +PFL+IDMI+++
Sbjct: 159 LQLFLDYSNAEKPN----GPEDTPIAALVPAFAISELKTAFQMGFMIFIPFLVIDMIISS 214

Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            +MAMGMMMLPP  ISLPFK++ FVL+DGW L+V++L+ S+
Sbjct: 215 TLMAMGMMMLPPVMISLPFKILLFVLVDGWYLVVKSLLVSY 255


>gi|222112240|ref|YP_002554504.1| flagellar biosynthesis protein flip [Acidovorax ebreus TPSY]
 gi|221731684|gb|ACM34504.1| flagellar biosynthetic protein FliP [Acidovorax ebreus TPSY]
          Length = 251

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 96/226 (42%), Positives = 140/226 (61%), Gaps = 4/226 (1%)

Query: 20  KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79
             +L  V+      +  +  ++T   FT LS  P +L+M+T F R +IV S+LR  +G  
Sbjct: 28  AGALPLVIGSGPGGTSYSVPIQTLLFFTALSFLPAVLLMMTGFTRIVIVLSLLRQAIGTQ 87

Query: 80  SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139
           S PPN VII L+LF+T +VM PTLD+  +    P   N IT   AIQR   P   FM   
Sbjct: 88  SAPPNQVIIGLSLFLTLFVMGPTLDKVYQEAYVPYTTNAITFEQAIQRAEAPMRGFMLKQ 147

Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
           TR+ D +LF  +A      T     +    R+L+P+F+ SEL+ +F+IGF+I +PFLIID
Sbjct: 148 TRQSDFALFARLAKLDEGVT----AETAPLRVLVPAFVTSELKSAFQIGFMIFIPFLIID 203

Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+V++++M++GMMML P  ++LPFK++ FVL DGW+LL+ +L  SF
Sbjct: 204 MVVSSVLMSLGMMMLSPVLVALPFKLMLFVLADGWNLLIGSLAASF 249


>gi|239997094|ref|ZP_04717618.1| flagellar biosynthesis protein FliP [Alteromonas macleodii ATCC
           27126]
          Length = 251

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 90/233 (38%), Positives = 142/233 (60%), Gaps = 5/233 (2%)

Query: 15  ELVFAKSSLHDVMNIPADLSIS--TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72
           E  +A+  +  V            T  ++   I T LS+ P  ++M+T F R I+V SIL
Sbjct: 18  EPAYAQQGISAVTVTTNQDGSQDYTMTLQALFIMTALSLIPAFIMMMTSFTRIIVVLSIL 77

Query: 73  RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132
           R  +G+   P N ++I ++LF++ ++M+P  +   E  +QP +N Q+T   A+++   P 
Sbjct: 78  RQAIGLQQSPSNQILIGVSLFLSMFIMAPVFEEVNERALQPYLNEQLTSLDALEQAKGPM 137

Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192
             FM + TR KDL  F+ +A    +  D    + +   ILIP+F+ SEL+ +F+IGF++ 
Sbjct: 138 RAFMLSQTRVKDLETFVRIAGDEGKYAD---TNEVPLTILIPAFVTSELKTAFQIGFMLF 194

Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +PFLIID++VA+I+MAMGMMML P  +SLPFK++ FVL+DGW+L+   L  SF
Sbjct: 195 IPFLIIDLVVASILMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLIFGTLATSF 247


>gi|332799191|ref|YP_004460690.1| flagellar biosynthetic protein FliP [Tepidanaerobacter sp. Re1]
 gi|332696926|gb|AEE91383.1| flagellar biosynthetic protein FliP [Tepidanaerobacter sp. Re1]
          Length = 258

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 97/241 (40%), Positives = 148/241 (61%), Gaps = 3/241 (1%)

Query: 5   CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
           C+  +    P+ +         +        +   ++   + TILS+AP +L ++T F R
Sbjct: 20  CYEKIVYAAPQDIPIPVPSFPFIKQAETTGETAMALQIVLLLTILSLAPSILTLLTSFTR 79

Query: 65  FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
            IIV S +R G+G+  VPP  V+I LALF+T +VM+P         IQP MN +I  + A
Sbjct: 80  TIIVLSFVRNGLGVQQVPPTQVLIGLALFITVFVMAPVWTEINSEAIQPYMNQEIDTSEA 139

Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
           ++R   P   FM   TREKDL+LF+  A      T +   D I   +LIPSF+ISEL+ +
Sbjct: 140 LRRSQIPLRNFMFRQTREKDLALFVHYAKLE---TPLNTLDDIPTYVLIPSFIISELKTA 196

Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           F++GF+I +PFL+IDMIV++ +M+MGM+MLPP  ISLPFK++ FV++DGW+L++ +++  
Sbjct: 197 FQMGFIIFIPFLVIDMIVSSTLMSMGMLMLPPIMISLPFKILLFVMVDGWNLVINSILAG 256

Query: 245 F 245
           F
Sbjct: 257 F 257


>gi|149182519|ref|ZP_01860992.1| flagellar biosynthesis protein P [Bacillus sp. SG-1]
 gi|148849779|gb|EDL63956.1| flagellar biosynthesis protein P [Bacillus sp. SG-1]
          Length = 221

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 95/207 (45%), Positives = 143/207 (69%), Gaps = 4/207 (1%)

Query: 39  IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
            V+   +FT+LSIAP +LI++T F R +IV S +RT +    +PPN V++ L+LF+TF++
Sbjct: 19  SVKLLLLFTVLSIAPGILILMTSFTRIVIVLSFVRTSLATQQMPPNQVLVGLSLFLTFFI 78

Query: 99  MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
           M+PT     E  + PL N +I    A +  A PF  FM  +TR+KDL LF++ + +    
Sbjct: 79  MAPTFQEVNETALTPLFNEEINLEQAYENAAGPFKDFMSKHTRQKDLELFLNYSGAERPE 138

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
                 D I    L+P+F +SE++ +F+IGF+I +PFL+IDM+VA+I+M+MGMMMLPP  
Sbjct: 139 ----SIDDIPLTALVPAFALSEIKTAFQIGFMIFIPFLVIDMVVASILMSMGMMMLPPVM 194

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ISLPFK++ FVL+DGW L+V++L++SF
Sbjct: 195 ISLPFKILLFVLVDGWYLVVKSLLQSF 221


>gi|254251034|ref|ZP_04944352.1| Flagellar transport protein FliP [Burkholderia dolosa AUO158]
 gi|124893643|gb|EAY67523.1| Flagellar transport protein FliP [Burkholderia dolosa AUO158]
          Length = 253

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 93/216 (43%), Positives = 144/216 (66%), Gaps = 4/216 (1%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P   +  +  V+T  + T+LS  P +L+M+T F R IIV S+LR  +G  + PPN V++ 
Sbjct: 41  PNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQALGTATTPPNQVLVG 100

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           LA+F+TF+VMSP LD++   G +P  +  +    A+QR   PF  FM   TRE DL+LF 
Sbjct: 101 LAMFLTFFVMSPVLDKAYTDGYKPFSDGAMPMEQAVQRGVAPFKSFMLKQTRETDLALFA 160

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
            ++    +   +   + +   +L+P+F+ SEL+  F+IGF I +PFLIIDM+VA+++M+M
Sbjct: 161 KIS----KAAPMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSM 216

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMM+ P+++SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 217 GMMMVSPSTVSLPFKLMLFVLVDGWQLLIGSLAQSF 252


>gi|304311110|ref|YP_003810708.1| Flagellar transport protein FliP [gamma proteobacterium HdN1]
 gi|301796843|emb|CBL45055.1| Flagellar transport protein FliP [gamma proteobacterium HdN1]
          Length = 253

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 93/240 (38%), Positives = 148/240 (61%), Gaps = 6/240 (2%)

Query: 9   LFLVTPELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65
           ++L+      A     D +++   P      +  ++  G  T+L++ P +++M+T F R 
Sbjct: 15  VWLMPSSSSAADPWSVDALSLKTNPDGTESWSVSLQVLGFMTVLTLLPAIVLMMTAFTRI 74

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
           IIVFSILR  +G+   P N +++ LALF+T +VM P  D    + ++P    +I    AI
Sbjct: 75  IIVFSILRQAIGLQQAPSNQILVGLALFLTLFVMRPVFDEINRVAVEPYQAEKIDGMQAI 134

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
           Q  + P   FM    RE DL+LF+++A    R  ++   D +   I+IP+F+ SEL+ +F
Sbjct: 135 QAASGPLRKFMMAQIREADLTLFIELAGEQDRYHEV---DEVPLTIIIPAFITSELKTAF 191

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +IGFL+ +PFLIIDM+VA+++MAMGMMML P  ISLPFK++ FV +DGW+++V +L  S+
Sbjct: 192 QIGFLLFIPFLIIDMVVASVLMAMGMMMLSPMIISLPFKIMLFVFVDGWAMVVGSLAASY 251


>gi|297538204|ref|YP_003673973.1| flagellar biosynthetic protein FliP [Methylotenera sp. 301]
 gi|297257551|gb|ADI29396.1| flagellar biosynthetic protein FliP [Methylotenera sp. 301]
          Length = 258

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 108/243 (44%), Positives = 154/243 (63%), Gaps = 6/243 (2%)

Query: 5   CFFALFLVTPELVFAKSSLHDVMNIPADLSIS--TWIVRTFGIFTILSIAPILLIMVTCF 62
              A  L+ P    A++ +  V  +PA       T  ++T  + T L+  P  L+M+T F
Sbjct: 19  LVLASMLMLPGTALAENGMPLVNALPAAGGGQNYTLSLQTLILLTSLTFLPAALLMMTGF 78

Query: 63  PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122
            R IIV S+LR  +G  S PPN V++ LALF+TF+VMSP +D+      QPL  N+IT  
Sbjct: 79  TRIIIVLSLLRQALGTQSAPPNQVMVGLALFLTFFVMSPVIDKIYVDAYQPLSENKITMQ 138

Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182
            A+ + A P   FM   TRE DL+LF++MA        I   D +   +L+P+FM SEL+
Sbjct: 139 EAMDKGAAPLKAFMMKQTREGDLALFVNMAKIEK----IETPDQVPLLVLVPAFMTSELK 194

Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
            +F+IGF I +PFLIIDM+VA+++MAMGMMM+ P+ +SLPFK++ FVL+DGW LL+ +LV
Sbjct: 195 TAFQIGFAIFIPFLIIDMVVASVLMAMGMMMVSPSIVSLPFKLMLFVLVDGWQLLLGSLV 254

Query: 243 KSF 245
           +SF
Sbjct: 255 QSF 257


>gi|293605018|ref|ZP_06687413.1| flagellar biosynthetic protein FliP [Achromobacter piechaudii ATCC
           43553]
 gi|292816587|gb|EFF75673.1| flagellar biosynthetic protein FliP [Achromobacter piechaudii ATCC
           43553]
          Length = 263

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 103/247 (41%), Positives = 150/247 (60%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIM 58
           M+           P  V A+++L  +   P      T+ +  +T  + T LS  P  L+M
Sbjct: 19  MLAAAAVLGLAFFPAGVVAQATLPALTATPGPNGSETYSLSMQTMLLMTSLSFLPAALLM 78

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIV  +LR+ MG    PPN V+I LALF+TFY MSP  D+      +PL    
Sbjct: 79  MTGFTRIIIVLGLLRSAMGTAMSPPNHVLIGLALFLTFYTMSPVFDKIYADAYKPLSEGS 138

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I   TA++R A P   FM + TRE DLSLF ++A        +     +  RIL+P+F+ 
Sbjct: 139 IQFETAVERAAGPLRTFMLHQTRENDLSLFANLAKQP----ALEDPSQVPLRILVPAFIT 194

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF I +PFLIID++VA+++MA+GMMM+PP +++LPFK++ FVL DGW+LL+
Sbjct: 195 SELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPVTVALPFKLMLFVLADGWNLLM 254

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 255 GSLAQSF 261


>gi|182680542|ref|YP_001834688.1| flagellar biosynthetic protein FliP [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182636425|gb|ACB97199.1| flagellar biosynthetic protein FliP [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 246

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 122/246 (49%), Positives = 173/246 (70%), Gaps = 2/246 (0%)

Query: 1   MIRYCFFALFLVTPE-LVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           M R    +  ++      +A+      +  P + ++S  I++   + TILS+AP LL+MV
Sbjct: 1   MKRLLIVSFLIIALAPAAYAQVPDLSTLVPPGNGTVSGRIIQLVALLTILSVAPGLLVMV 60

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F RF I  S LR+G+G+ S P NLV+ISL+LFMTFYVMSP  +++ + G++P+M+NQ+
Sbjct: 61  TSFTRFAIALSFLRSGLGLQSTPANLVLISLSLFMTFYVMSPVFEKAWDGGVKPMMDNQL 120

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           TE  A  ++ +PF  FM    R KDL LF D+A  +  + D T ++ IE RILIP+FMIS
Sbjct: 121 TEQEAFPKIIQPFREFMSGQVRGKDLKLFTDLAKENFPSVDQTGSE-IELRILIPAFMIS 179

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           ELRR FE+GFLI+LPFL+IDMI + I M+MGMMMLPPT I+LP KV+FF+LIDGW++L+ 
Sbjct: 180 ELRRGFEMGFLIVLPFLVIDMITSAITMSMGMMMLPPTVIALPVKVLFFILIDGWNMLIG 239

Query: 240 NLVKSF 245
           +LV+S+
Sbjct: 240 SLVRSY 245


>gi|77165627|ref|YP_344152.1| flagellar biosynthesis protein FliP [Nitrosococcus oceani ATCC
           19707]
 gi|76883941|gb|ABA58622.1| Flagellar transport protein FliP [Nitrosococcus oceani ATCC 19707]
          Length = 262

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 96/233 (41%), Positives = 150/233 (64%), Gaps = 6/233 (2%)

Query: 15  ELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72
              +A   +  +          T+ V  +  G+ T+L++ P  ++++T F R I+VFSIL
Sbjct: 30  AAGWAAPGVPALAVTADGNGEQTYTVTLQILGLMTVLTLLPAAVMVMTSFTRIIVVFSIL 89

Query: 73  RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132
           R  +G+   P + ++I LALF+TF++MSP LD++ + G++P    +I+ T A+ RV EPF
Sbjct: 90  RQALGLAQTPSSQILIGLALFLTFFIMSPVLDKAYQEGVKPYFQEEISVTDALARVREPF 149

Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192
             FM   TRE DL LF +++            + + + +L+P+F+ SEL+ +F+IGFL+ 
Sbjct: 150 HHFMIAQTRETDLKLFAEISGR----EAFESPEQVPFSLLVPAFITSELKTAFQIGFLLF 205

Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +PFLIID++VA+++MAMGMMML P  +SLPFK++ FVLIDGWSLL+  L  SF
Sbjct: 206 IPFLIIDLVVASVLMAMGMMMLSPMLVSLPFKLLLFVLIDGWSLLMGTLASSF 258


>gi|144900473|emb|CAM77337.1| Type III secretion system inner membrane P protein
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 253

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 104/239 (43%), Positives = 159/239 (66%), Gaps = 7/239 (2%)

Query: 10  FLVTPELVFAKS---SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
            LV     +A+    +L          S +  I++   + T+LS+AP +L+MVT F R +
Sbjct: 16  VLVLSAPAWAQQFSLNLGAGGGGGNANSTTLRIIQLIALTTVLSVAPSILVMVTSFTRIV 75

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IV   LR  +G    PPN+V++SLA+F+T ++M+PTL++S   G+QP +   + E  A +
Sbjct: 76  IVLGFLRQALGTMQSPPNMVLVSLAMFLTAFIMAPTLEQSWNDGVQPYVEGSLEEAAAFE 135

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
              +P   FM  + R++DL LF+D++    R  D+ K +    + LIP+FMISELRR+FE
Sbjct: 136 ATVKPLQTFMLRHVRDQDLQLFLDLS----RTPDVAKAEDAPLKALIPAFMISELRRAFE 191

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGFLI LPF++IDM++A+++M+MGMMM+PP  +SLPFK+IFFVL+DGW ++V +LV+SF
Sbjct: 192 IGFLIFLPFIVIDMVIASVLMSMGMMMIPPAMVSLPFKLIFFVLVDGWYMVVGSLVQSF 250


>gi|85859180|ref|YP_461382.1| flagellar biosynthesis protein FliP [Syntrophus aciditrophicus SB]
 gi|85722271|gb|ABC77214.1| flagellar biosynthetic protein [Syntrophus aciditrophicus SB]
          Length = 262

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 92/249 (36%), Positives = 152/249 (61%), Gaps = 9/249 (3%)

Query: 2   IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSIST-----WIVRTFGIFTILSIAPILL 56
           +        ++ P +  A+      +++    +  +      +++   I T+LS+ P +L
Sbjct: 17  VLLLVILFTVLGPGVASAEPLSLPNISLTVGGNADSPDKVATVIQLLFILTVLSLTPAIL 76

Query: 57  IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
           +M+T F R +IV S+LR  MG   +P N +II L+LF+TF++MSP         ++P  +
Sbjct: 77  LMLTSFTRIVIVLSLLRQAMGTQQMPSNQIIIGLSLFLTFFIMSPVWQSVHSEALKPYYD 136

Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
            +I+   AI+R   P   FM   TREKD++LF+ ++          K   +   +L+P+F
Sbjct: 137 EEISGEQAIERAVIPVKAFMLKQTREKDIALFLQISKGKRPE----KPADLALSVLVPAF 192

Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
           +ISEL+ +F+IGFL+ LPF IIDM+VA+++++MGMMMLPP  +SLPFK++ FVL+DGW L
Sbjct: 193 VISELKTAFQIGFLLFLPFFIIDMVVASVLLSMGMMMLPPIMMSLPFKLLLFVLVDGWYL 252

Query: 237 LVENLVKSF 245
           ++ +LV+SF
Sbjct: 253 IIGSLVQSF 261


>gi|121596084|ref|YP_987980.1| flagellar biosynthesis protein FliP [Acidovorax sp. JS42]
 gi|120608164|gb|ABM43904.1| flagellar biosynthetic protein FliP [Acidovorax sp. JS42]
          Length = 251

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 95/226 (42%), Positives = 140/226 (61%), Gaps = 4/226 (1%)

Query: 20  KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79
             +L  V+      +  +  ++T   FT LS  P +L+M+T F R +IV S+LR  +G  
Sbjct: 28  AGALPLVIGSGPGGTSYSVPIQTLLFFTALSFLPAVLLMMTGFTRIVIVLSLLRQAIGTQ 87

Query: 80  SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139
           S PPN VII L+LF+T +VM PTLD+  +    P   N IT   AIQ+   P   FM   
Sbjct: 88  SAPPNQVIIGLSLFLTLFVMGPTLDKVYQEAYVPYTTNAITFEQAIQKAEAPMRGFMLKQ 147

Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
           TR+ D +LF  +A      T     +    R+L+P+F+ SEL+ +F+IGF+I +PFLIID
Sbjct: 148 TRQSDFALFARLAKLDEGVT----AETAPLRVLVPAFVTSELKSAFQIGFMIFIPFLIID 203

Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+V++++M++GMMML P  ++LPFK++ FVL DGW+LL+ +L  SF
Sbjct: 204 MVVSSVLMSLGMMMLSPVLVALPFKLMLFVLADGWNLLIGSLAASF 249


>gi|30248477|ref|NP_840547.1| flagellar biosynthesis protein FliP [Nitrosomonas europaea ATCC
           19718]
 gi|30138363|emb|CAD84372.1| Flagella transport protein FliP family [Nitrosomonas europaea ATCC
           19718]
          Length = 268

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 94/236 (39%), Positives = 151/236 (63%), Gaps = 6/236 (2%)

Query: 12  VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIA--PILLIMVTCFPRFIIVF 69
           V   ++  K+    V + PA    +T+ +    +  + S+   P +++M++ F R IIV 
Sbjct: 35  VAGPVLAQKTGFPAVTSTPAAGGGATYTLSLQTLLLLTSLTFLPAVILMMSSFTRIIIVL 94

Query: 70  SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129
           S+LR  MG  S PPN V++ LALF++F++MSP +D+       P   ++I+   A+++  
Sbjct: 95  SLLRQAMGTQSSPPNQVLLGLALFLSFFIMSPVIDKVYTEAYLPFSEDKISIVEAMEKAG 154

Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189
           +P   FM   TRE D++LF  +A     N +I   D +  +IL+P+++ SEL+ +F+IGF
Sbjct: 155 DPLKSFMLRQTREADIALFARIAE----NGEIESPDQVPMKILVPAYITSELKTAFQIGF 210

Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++ +PFLIIDM+VA+ +MAMGMMML P  ISLPFK++ FVL+DGW+LL+ +L +SF
Sbjct: 211 VVFIPFLIIDMVVASTLMAMGMMMLSPMIISLPFKLMLFVLVDGWNLLIGSLTQSF 266


>gi|332305669|ref|YP_004433520.1| flagellar biosynthetic protein FliP [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172998|gb|AEE22252.1| flagellar biosynthetic protein FliP [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 251

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 91/244 (37%), Positives = 142/244 (58%), Gaps = 5/244 (2%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSIS--TWIVRTFGIFTILSIAPILLIMVTC 61
           +   A+ L  P    A+  +  +            T  ++   I T LS+ P  ++M+T 
Sbjct: 7   WLLAAVLLAAPSWAIAEPGIPALTMTENADGSQDYTMTLQVVAIMTALSLLPAFIMMMTS 66

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F R IIV SILR  +G+   P N ++I ++LF++ ++M+P  ++  E  +QP +N QIT 
Sbjct: 67  FTRIIIVLSILRQAIGLQQSPSNQILIGVSLFLSMFIMAPVFEKINETALQPYLNEQITS 126

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
             A +   EP   FM   TR KDL  F+++           +   +   ILIP+F+ SEL
Sbjct: 127 IQAYELAKEPLRGFMLAQTRVKDLETFVEI---GGYEDQFQEPADVPMNILIPAFVTSEL 183

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
           + +F+IGF++ +PFLI+D++VA+I+MAMGMMML P  +SLPFK++ FVL+DGW+L+   L
Sbjct: 184 KTAFQIGFMLFIPFLILDLVVASILMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLIFGTL 243

Query: 242 VKSF 245
             SF
Sbjct: 244 ANSF 247


>gi|300113613|ref|YP_003760188.1| flagellar biosynthetic protein FliP [Nitrosococcus watsonii C-113]
 gi|299539550|gb|ADJ27867.1| flagellar biosynthetic protein FliP [Nitrosococcus watsonii C-113]
          Length = 262

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 95/233 (40%), Positives = 149/233 (63%), Gaps = 6/233 (2%)

Query: 15  ELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72
              +A   +  +          T+ V  +  G+ T+L++ P  ++++T F R I+VFSIL
Sbjct: 30  ATGWAAPGVPALAVTADGNGEQTYTVTLQILGLMTVLTLLPAAVMVMTSFTRIIVVFSIL 89

Query: 73  RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132
           R  +G+   P + ++I LALF+TF++MSP LD++ + G++P    +I+   A+ RV EPF
Sbjct: 90  RQALGLAQTPSSQILIGLALFLTFFIMSPVLDKAYQEGVKPYFQEEISVADALARVREPF 149

Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192
             FM   TRE DL LF +++            + + + +L+P+F+ SEL+ +F+IGFL+ 
Sbjct: 150 HHFMIAQTRETDLKLFAEISGR----EAFESPEQVPFSLLVPAFITSELKTAFQIGFLLF 205

Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +PFLIID++VA+++MAMGMMML P  +SLPFK++ FVLIDGWSLL+  L  SF
Sbjct: 206 IPFLIIDLVVASVLMAMGMMMLSPMLVSLPFKLLLFVLIDGWSLLMGTLASSF 258


>gi|56419769|ref|YP_147087.1| flagellar biosynthesis protein FliP [Geobacillus kaustophilus
           HTA426]
 gi|56379611|dbj|BAD75519.1| flagellar biosynthetic protein [Geobacillus kaustophilus HTA426]
          Length = 222

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 97/209 (46%), Positives = 146/209 (69%), Gaps = 4/209 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  V+   + T+LSIAP +LIM+TCF R +IV S +RT +G   +PPN V++ LALF+TF
Sbjct: 17  STAVKLLLLLTVLSIAPGILIMMTCFTRIVIVLSFVRTALGTQQMPPNQVLVGLALFLTF 76

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           ++M+PT     +  +QPL  ++I    A +R A P   FM   TR++DL+LF+  + +  
Sbjct: 77  FIMAPTWKEINDQALQPLFADKIDLEEAYERAAVPLKQFMSQYTRQEDLALFLSYSGAKQ 136

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
             T     + I    L+P+F ISEL+ +F++GF+I +PFL+IDMIVA+++M+MGMMMLPP
Sbjct: 137 PKT----INDIPMTALVPAFAISELKTAFQMGFMIFIPFLVIDMIVASVLMSMGMMMLPP 192

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             ISLPFK++ FVL+DGW L+V++L++SF
Sbjct: 193 VMISLPFKILLFVLVDGWHLVVKSLLQSF 221


>gi|153011518|ref|YP_001372732.1| flagellar biosynthesis protein FliP [Ochrobactrum anthropi ATCC
           49188]
 gi|151563406|gb|ABS16903.1| flagellar biosynthetic protein FliP [Ochrobactrum anthropi ATCC
           49188]
          Length = 246

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 125/226 (55%), Positives = 168/226 (74%), Gaps = 3/226 (1%)

Query: 20  KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79
           +    D +      + S  IV+ FG+ T+LSIAP LLIMVT F RF I FS+LR+G+G+ 
Sbjct: 23  QPLTLDNLLPAGSGAASGQIVQLFGLLTVLSIAPGLLIMVTSFTRFAIAFSLLRSGLGLQ 82

Query: 80  SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139
           + P ++V+ISLALFMTFYVM+P  DR+   G+QPLM N+IT+  A   +++PF  FM   
Sbjct: 83  TAPASMVMISLALFMTFYVMAPAFDRAWNNGVQPLMRNEITQEAAFGEISQPFREFMMGQ 142

Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
            R+KDL LF D+A  S R  D      +++R+L+P+FMISELRR FEIGFLI+LPFL+ID
Sbjct: 143 VRDKDLRLFEDLADPSFRTGDDGI---VDFRVLVPAFMISELRRGFEIGFLIVLPFLVID 199

Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW++LV +L++SF
Sbjct: 200 LVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245


>gi|238785487|ref|ZP_04629470.1| Flagellar biosynthetic protein fliP [Yersinia bercovieri ATCC
           43970]
 gi|238713589|gb|EEQ05618.1| Flagellar biosynthetic protein fliP [Yersinia bercovieri ATCC
           43970]
          Length = 249

 Score =  209 bits (531), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 93/227 (40%), Positives = 146/227 (64%), Gaps = 6/227 (2%)

Query: 21  SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           + L  +++ P      +W   V+T    T LS  P  L+M+T F R IIV  +LR  +G 
Sbjct: 25  AQLPGLISQPLANGGQSWSLPVQTLVFITALSFLPAALLMMTSFTRIIIVLGLLRNALGT 84

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
            S PPN V++ LALF+TF++MSP  D+  +    P   ++I+   A+ + ++P   FM  
Sbjct: 85  PSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAMDKGSQPLREFMLR 144

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
            TRE DL+L+  +A+       +   + +  RIL+P+++ SEL+ +F+IGF + +PFLII
Sbjct: 145 QTRESDLALYARLANLP----PLEGPEVVPMRILLPAYVTSELKTAFQIGFTVFIPFLII 200

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           D++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 201 DLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 247


>gi|118588703|ref|ZP_01546111.1| flagellar biosynthesis protein P [Stappia aggregata IAM 12614]
 gi|118438689|gb|EAV45322.1| flagellar biosynthesis protein P [Stappia aggregata IAM 12614]
          Length = 237

 Score =  209 bits (531), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 107/238 (44%), Positives = 163/238 (68%), Gaps = 6/238 (2%)

Query: 8   ALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67
           AL  V      A+      +    D +++   V+   + T+LS+AP +L+MVT F R ++
Sbjct: 3   ALLAVLVGPAAAQEI---SVGFGEDTTLTERAVQMVILLTVLSLAPSILVMVTSFTRIVV 59

Query: 68  VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
           V S+LR+ +G+ + PPN+V++SLALF++ ++M PTL  S + G+QPL++  I    A +R
Sbjct: 60  VLSLLRSAIGLQTAPPNMVMVSLALFLSAFIMMPTLQASYDAGVQPLIDGDIELEQAFER 119

Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
            ++PF  FM +  REKDL+LF +++ +          + +    L+P+FMISELRR+FEI
Sbjct: 120 ASDPFRTFMLSQVREKDLALFEELSGAE---EAPESPEDLSMATLVPAFMISELRRAFEI 176

Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GFL+ LPFLIID+++A+++M+MGMMMLPP  ISLPFK+IFFVL+DGW+L+  +LVKSF
Sbjct: 177 GFLLYLPFLIIDLVIASVLMSMGMMMLPPVVISLPFKLIFFVLVDGWNLVAGSLVKSF 234


>gi|187478200|ref|YP_786224.1| flagellar biosynthesis protein FliP [Bordetella avium 197N]
 gi|115422786|emb|CAJ49314.1| flagellar biosynthetic protein [Bordetella avium 197N]
          Length = 255

 Score =  209 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 103/247 (41%), Positives = 150/247 (60%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIM 58
           ++         V P    A+++L  +   P      T+ +  +T  + T LS  P  L+M
Sbjct: 11  LLGLATLVSLAVMPSGAIAQATLPALTTTPGVNGSQTYSLSMQTLLLMTSLSFLPAALLM 70

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIV  +LR+ MG    PPN V++ +ALF+TFY MSP  D+      QPL    
Sbjct: 71  MTGFTRIIIVLGLLRSAMGTAMSPPNHVLVGIALFLTFYTMSPVFDKIYTEAYQPLSTGS 130

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I   TA++R   P   FM + TRE DL+LF ++A+       I     +  RILIP+F+ 
Sbjct: 131 IPFETALERAGAPLHTFMLHQTRENDLALFANLANIPK----IEDPSKVPMRILIPAFIT 186

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF I +PFLIID++VA+++MA+GMMM+PP ++SLPFK++ FVL DGW+LL+
Sbjct: 187 SELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPVTVSLPFKLMLFVLADGWNLLL 246

Query: 239 ENLVKSF 245
            +L KSF
Sbjct: 247 GSLAKSF 253


>gi|78043022|ref|YP_359852.1| flagellar biosynthesis protein FliP [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995137|gb|ABB14036.1| flagellar biosynthetic protein FliP [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 254

 Score =  209 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 91/193 (47%), Positives = 137/193 (70%), Gaps = 4/193 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P  L+++T F R ++V S+LR  MG    PPN V+I LALF+T ++MSP +++  +  IQ
Sbjct: 65  PAFLLLMTSFTRIVVVLSLLRNAMGTQQAPPNQVLIGLALFLTIFIMSPVINKINQDAIQ 124

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P +NNQIT+  AI+    P   FM   TREKDL+LF+++A      T     D + + ++
Sbjct: 125 PYLNNQITQEQAIRAAEAPLKDFMLKQTREKDLALFIELAKLPRPQT----KDDVPFTVV 180

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           +P+F+ISEL+ +F++GF++ LPFLIIDM+VA+I+M+MGM M+PP  ++LPFK++ FVL D
Sbjct: 181 VPAFIISELKTAFQMGFMLFLPFLIIDMVVASILMSMGMFMIPPMLVALPFKLLLFVLAD 240

Query: 233 GWSLLVENLVKSF 245
           GW L+V++LV SF
Sbjct: 241 GWYLVVKSLVSSF 253


>gi|241763645|ref|ZP_04761695.1| flagellar biosynthetic protein FliP [Acidovorax delafieldii 2AN]
 gi|241367120|gb|EER61486.1| flagellar biosynthetic protein FliP [Acidovorax delafieldii 2AN]
          Length = 263

 Score =  209 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 96/246 (39%), Positives = 148/246 (60%), Gaps = 5/246 (2%)

Query: 2   IRYCFFALFLV-TPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
             +   AL +V  P    +  SL  ++      +  +  ++T   FT LS  P +L+M+T
Sbjct: 21  WLWGVGALAMVHLPAAAQSAGSLPLLVGSGNSGTSFSVPIQTLLFFTALSFLPAVLLMMT 80

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R +IV S+LR  +G  S PPN VII L+LF+TF+VM PTLD+  +    P   N I+
Sbjct: 81  GFTRIVIVLSLLRQALGTQSAPPNQVIIGLSLFLTFFVMGPTLDKVYQDAYLPYTTNTIS 140

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A+++   P   FM   TR+ D +LF  +A            +    R+L+P+F+ SE
Sbjct: 141 FEAALEKAEAPMRSFMLKQTRQSDFALFSRLAKL----DVSVTAETAPLRVLVPAFVTSE 196

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +F+IGF+I +PFL+IDM+V++I+M++GMMML P  ++LPFK++ FVL DGW+LL+ +
Sbjct: 197 LKSAFQIGFMIFIPFLVIDMVVSSILMSLGMMMLSPVLVALPFKLMLFVLADGWNLLIGS 256

Query: 241 LVKSFI 246
           L  SF+
Sbjct: 257 LAASFV 262


>gi|89075523|ref|ZP_01161934.1| flagellar biosynthesis protein [Photobacterium sp. SKA34]
 gi|89048795|gb|EAR54366.1| flagellar biosynthesis protein [Photobacterium sp. SKA34]
          Length = 282

 Score =  209 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 94/221 (42%), Positives = 139/221 (62%), Gaps = 5/221 (2%)

Query: 25  DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
            V   P      +  ++   + T L   P ++I++T F R ++V SILR  MG+   P N
Sbjct: 65  SVTVNPDGSEDYSVTLQILALMTALGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSN 124

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
            VII +ALF+TF+VMSP +D+     +QP +N QIT   A+ +  +P   FM   TR KD
Sbjct: 125 QVIIGIALFLTFFVMSPVIDKINADAVQPYINEQITAKEALAKAEDPMRQFMLKQTRVKD 184

Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
           L  F++M+ S+           +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+
Sbjct: 185 LETFVNMSGST-----ADDPQTVPLTVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVAS 239

Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           I+MAMGMMML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 240 ILMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 280


>gi|261419434|ref|YP_003253116.1| flagellar biosynthesis protein FliP [Geobacillus sp. Y412MC61]
 gi|297530591|ref|YP_003671866.1| flagellar biosynthetic protein FliP [Geobacillus sp. C56-T3]
 gi|319766249|ref|YP_004131750.1| flagellar biosynthetic protein FliP [Geobacillus sp. Y412MC52]
 gi|261375891|gb|ACX78634.1| flagellar biosynthetic protein FliP [Geobacillus sp. Y412MC61]
 gi|297253843|gb|ADI27289.1| flagellar biosynthetic protein FliP [Geobacillus sp. C56-T3]
 gi|317111115|gb|ADU93607.1| flagellar biosynthetic protein FliP [Geobacillus sp. Y412MC52]
          Length = 222

 Score =  209 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 97/209 (46%), Positives = 146/209 (69%), Gaps = 4/209 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  V+   + T+LSIAP +LIM+TCF R +IV S +RT +G   +PPN V++ LALF+TF
Sbjct: 17  STAVKLLLLLTVLSIAPGILIMMTCFTRIVIVLSFVRTALGTQQMPPNQVLVGLALFLTF 76

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           ++M+PT     +  +QPL  ++I    A +R A P   FM   TR++DL+LF+  + +  
Sbjct: 77  FIMAPTWKDINDQALQPLFADKIDLEEAYERAAVPLKQFMSQYTRQEDLALFLSYSGAKQ 136

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
             T     + I    L+P+F ISEL+ +F++GF+I +PFL+IDMIVA+++M+MGMMMLPP
Sbjct: 137 PKT----INDIPMTALVPAFAISELKTAFQMGFMIFIPFLVIDMIVASVLMSMGMMMLPP 192

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             ISLPFK++ FVL+DGW L+V++L++SF
Sbjct: 193 VMISLPFKILLFVLVDGWHLVVKSLLQSF 221


>gi|33592492|ref|NP_880136.1| flagellar biosynthesis protein FliP [Bordetella pertussis Tohama I]
 gi|33572138|emb|CAE41681.1| flagellar biosynthetic protein FliP [Bordetella pertussis Tohama I]
 gi|332381910|gb|AEE66757.1| flagellar biosynthesis protein FliP [Bordetella pertussis CS]
          Length = 244

 Score =  209 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 101/236 (42%), Positives = 147/236 (62%), Gaps = 6/236 (2%)

Query: 12  VTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVF 69
           + P    A+++L  +   P      T+ +  +T  + T LS  P  L+M+T F R IIV 
Sbjct: 11  LWPSGALAQATLPALTATPGPNGSETYSLSMQTLLLMTSLSFLPAALLMMTGFTRIIIVL 70

Query: 70  SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129
            +LR+ MG    PPN V+I LALF+TFY MSP  D+      QPL    I   TA++R  
Sbjct: 71  GLLRSAMGTAMSPPNHVLIGLALFLTFYTMSPVFDKIYTDAYQPLAAGSIPFETAVERAG 130

Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189
            P   FM + TRE DL+LF ++A+       +     +  RILIP+F+ SEL+ +F+IGF
Sbjct: 131 APLHNFMLHQTRENDLTLFANLANLP----AMEDPSQVPMRILIPAFITSELKTAFQIGF 186

Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            I +PFLIID++VA+++MA+GMMM+PP +++LPFK++ FVL DGW LL+ +L +SF
Sbjct: 187 TIFIPFLIIDLVVASVLMALGMMMVPPVTVALPFKLMLFVLADGWHLLLGSLAQSF 242


>gi|83858799|ref|ZP_00952321.1| flagellar biosynthesis protein FliP [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853622|gb|EAP91474.1| flagellar biosynthesis protein FliP [Oceanicaulis alexandrii
           HTCC2633]
          Length = 258

 Score =  209 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 100/216 (46%), Positives = 154/216 (71%), Gaps = 5/216 (2%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
             D +++  +++   + T+LS+AP +LIM T F R ++V S+LRT MG+   PPN V+IS
Sbjct: 41  GNDTALTERVLQMIALLTVLSLAPSILIMTTSFIRIVVVLSLLRTAMGLQQSPPNAVLIS 100

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           L+LF+T ++M+P   ++ + G++PL++ Q++   A    A+P   FM  +TRE+DL LF+
Sbjct: 101 LSLFLTAFIMAPVFTQAYQDGVEPLLSGQLSNQEAFSAAAQPVKTFMLAHTREEDLGLFL 160

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
           +++       +          ++ P+FMISELRR+FEIGFL+ +PFLIID++VA+I+M+M
Sbjct: 161 NISG-----EEPETAQDTPVHVVAPAFMISELRRAFEIGFLLFIPFLIIDLVVASILMSM 215

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMMLPP  ISLPFK+IFFVL+DGWSL++ +LV+SF
Sbjct: 216 GMMMLPPVIISLPFKLIFFVLVDGWSLVIGSLVQSF 251


>gi|167560941|ref|ZP_02353857.1| flagellar biosynthesis protein FliP [Burkholderia oklahomensis
           EO147]
 gi|167568200|ref|ZP_02361074.1| flagellar biosynthesis protein FliP [Burkholderia oklahomensis
           C6786]
          Length = 253

 Score =  209 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 97/241 (40%), Positives = 148/241 (61%), Gaps = 6/241 (2%)

Query: 7   FALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPR 64
            A+ L         + L  + + P     +T+   V+T  + T+LS  P +L+M+T F R
Sbjct: 16  LAIGLAPALACAQAAGLPALNSAPGPNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTR 75

Query: 65  FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
            IIV S+LR  +G  S PPN V++ LALF+T +VMSP LD++     +P     +    A
Sbjct: 76  IIIVLSLLRQALGTASTPPNQVLVGLALFLTLFVMSPVLDKAYADAYKPFSEGTLQMDQA 135

Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
           +QR   PF  FM   TRE DL+LF  ++    +   +   + +   +L+P+F+ SEL+  
Sbjct: 136 VQRGTAPFKGFMLKQTRETDLALFAKIS----KAAPMQGPEDVPLSLLVPAFVTSELKTG 191

Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           F+IGF I +PFLIIDM+VA+++M+MGMMM+ P ++SLPFK++ FVL+DGW LL+ +L +S
Sbjct: 192 FQIGFTIFIPFLIIDMVVASVLMSMGMMMVSPATVSLPFKLMLFVLVDGWQLLIGSLAQS 251

Query: 245 F 245
           F
Sbjct: 252 F 252


>gi|237755394|ref|ZP_04584021.1| flagellar biosynthetic protein FliP [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692435|gb|EEP61416.1| flagellar biosynthetic protein FliP [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 338

 Score =  209 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 109/242 (45%), Positives = 152/242 (62%), Gaps = 5/242 (2%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
           Y   ++ +V   L F+ S         A  +     ++   + TI+SIAP LLI VT F 
Sbjct: 101 YFIISIIIVLTLLNFSFSYADTFSETLAGFNRLDTTLKILLLITIISIAPALLISVTAFV 160

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
           R +IV S+LR  +G+ + PPN VI+ LALF+T +VM PT ++  E+ I P +  QI++  
Sbjct: 161 RIVIVLSLLRHALGIPTAPPNQVIVGLALFLTIFVMKPTFEKINEVSISPYLKKQISDIQ 220

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
           AI+   EP   FM  NTR++DL LF+D+A     N        I    LIP+FMISE++ 
Sbjct: 221 AIENAKEPLKEFMLKNTRKEDLKLFLDLA-----NEKPLSPKDISISTLIPAFMISEIKT 275

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
           +FEI F+I LPFL+ID IVA+I+M+MGMMM+PP  ISLPFK++ FVL DG+ LLV+ LV 
Sbjct: 276 AFEIVFIIYLPFLVIDFIVASILMSMGMMMIPPMFISLPFKLMLFVLADGFELLVKALVS 335

Query: 244 SF 245
           S+
Sbjct: 336 SY 337


>gi|148266209|ref|YP_001232915.1| flagellar biosynthesis protein FliP [Geobacter uraniireducens Rf4]
 gi|146399709|gb|ABQ28342.1| flagellar biosynthetic protein FliP [Geobacter uraniireducens Rf4]
          Length = 251

 Score =  208 bits (530), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 95/249 (38%), Positives = 151/249 (60%), Gaps = 8/249 (3%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPAD----LSISTWIVRTFGIFTILSIAPILL 56
           + +     L ++T    FA+      +++        +    +++ F + T+LS+AP LL
Sbjct: 6   LFKTALILLCMLTAASAFAEPLALPTVSVGMGKVSKPADVAVVLQIFFLMTVLSLAPGLL 65

Query: 57  IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
           +M T F R ++V S LR  +G    P N +II L+LF+TF++M+P   +     +QP   
Sbjct: 66  MMTTSFTRIVVVLSFLRNAIGTQQAPSNQIIIGLSLFLTFFIMAPVWQQINTQALQPYKA 125

Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
             I++  A +R   P   FM +  REKDL+LF+ ++            D I    LIP++
Sbjct: 126 QTISQEEAFKRAVAPVRKFMLSQVREKDLALFLSLSKLPRPK----NADDIPTLTLIPAY 181

Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
           M+SEL+ +F+IGFL+ +PFL++DM+VA+++M+MGMMMLPP  ISLPFK++ FVL+DGW L
Sbjct: 182 MVSELKTAFQIGFLVFIPFLVLDMVVASVLMSMGMMMLPPVMISLPFKILLFVLVDGWGL 241

Query: 237 LVENLVKSF 245
           ++ +LVKSF
Sbjct: 242 VIGSLVKSF 250


>gi|315124338|ref|YP_004066342.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315018060|gb|ADT66153.1| flagellar biosynthesis protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 230

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 103/225 (45%), Positives = 155/225 (68%), Gaps = 4/225 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           +++  ++ P   +     +    + TIL++AP ++ ++T F R I+VFS LR  MG  S+
Sbjct: 9   TVNLSLSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSM 68

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PPN ++++LAL +TF++M P   +S   GI+P +  +I    A  + A+PF  FM  NTR
Sbjct: 69  PPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNTR 128

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           EKDL+LF  + +  +  T     D +   +L+P+FMISEL+ +FEIGFLI LPFL+IDM+
Sbjct: 129 EKDLALFYRIRNLPNPKT----IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMV 184

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           V++++MAMGMMMLPPT ISLPFK++ FVL+DGW+LLV+ LV+SF+
Sbjct: 185 VSSVLMAMGMMMLPPTMISLPFKLLIFVLVDGWNLLVQRLVESFV 229


>gi|330839520|ref|YP_004414100.1| flagellar biosynthetic protein FliP [Selenomonas sputigena ATCC
           35185]
 gi|329747284|gb|AEC00641.1| flagellar biosynthetic protein FliP [Selenomonas sputigena ATCC
           35185]
          Length = 252

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 95/224 (42%), Positives = 143/224 (63%), Gaps = 4/224 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           SL   +   A        ++   + TILS+ P +L+M T F R ++V   LR  M   +V
Sbjct: 32  SLSVNVGEAAGPQDVATSLQILALLTILSLVPSILVMTTSFVRIVVVIGFLRNAMSTQNV 91

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PPN V+++L+LF+TFY+M P    + + GIQP +  QIT+  AI     P   FM   TR
Sbjct: 92  PPNQVVLALSLFLTFYIMQPYWSEANQQGIQPYLAGQITQEQAIDNTLAPLREFMFRQTR 151

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           E DL+LF++++ +    +       +    LIP+F+ISEL+ +F+IGF+I +PF++IDMI
Sbjct: 152 ESDLALFVNLSDAERPESQA----DVSTATLIPAFVISELKTAFQIGFMIYIPFIVIDMI 207

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           VA+ +M+MGMMMLPP  ISLPFK++ FV++DGW LL+++L+ SF
Sbjct: 208 VASTLMSMGMMMLPPVMISLPFKILLFVMVDGWHLLIKSLIMSF 251


>gi|253573534|ref|ZP_04850877.1| flagellar biosynthetic protein FliP [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251847062|gb|EES75067.1| flagellar biosynthetic protein FliP [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 255

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 94/220 (42%), Positives = 147/220 (66%), Gaps = 4/220 (1%)

Query: 26  VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
           + N  +  +  T  +    + T+LSIAP +L+++T F R ++V   +R+ +G   +PPN 
Sbjct: 38  IGNSDSGGASGTTSLSILLMITVLSIAPAILVLMTSFTRIVVVLGFVRSSLGTQQMPPNQ 97

Query: 86  VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145
           V+I LALF+T ++MSPTL    E+ +QP +  +IT+T A+ + A P   FM ++TR KDL
Sbjct: 98  VLIGLALFLTLFIMSPTLSTINEVAVQPYIKGEITQTEALDKAAVPMKKFMYSHTRTKDL 157

Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
            LFM               + I   +++P+F ISEL+ +F++GF+I +PFLIID++V+++
Sbjct: 158 QLFMGYTKMEKPK----SYEDIPLSVMVPAFAISELKTAFQMGFMIFIPFLIIDIVVSSV 213

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +MAMGMMMLPP  ISLPFK++ FVL+DGW L+V++L+ SF
Sbjct: 214 LMAMGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLLVSF 253


>gi|23499922|ref|NP_699362.1| flagellar biosynthesis protein FliP [Brucella suis 1330]
 gi|148558353|ref|YP_001257218.1| flagellar biosynthesis protein FliP [Brucella ovis ATCC 25840]
 gi|161620242|ref|YP_001594128.1| flagellar biosynthesis protein FliP [Brucella canis ATCC 23365]
 gi|163844351|ref|YP_001622006.1| flagellar biosynthesis protein FliP [Brucella suis ATCC 23445]
 gi|225628631|ref|ZP_03786665.1| flagellar biosynthetic protein FliP [Brucella ceti str. Cudo]
 gi|225686018|ref|YP_002733990.1| flagellar biosynthesis protein FliP [Brucella melitensis ATCC
           23457]
 gi|254695296|ref|ZP_05157124.1| flagellar biosynthesis protein FliP [Brucella abortus bv. 3 str.
           Tulya]
 gi|254702582|ref|ZP_05164410.1| flagellar biosynthesis protein FliP [Brucella suis bv. 3 str. 686]
 gi|254706286|ref|ZP_05168114.1| flagellar biosynthesis protein FliP [Brucella pinnipedialis
           M163/99/10]
 gi|254711420|ref|ZP_05173231.1| flagellar biosynthesis protein FliP [Brucella pinnipedialis B2/94]
 gi|254712020|ref|ZP_05173831.1| flagellar biosynthesis protein FliP [Brucella ceti M644/93/1]
 gi|254715089|ref|ZP_05176900.1| flagellar biosynthesis protein FliP [Brucella ceti M13/05/1]
 gi|256014948|ref|YP_003104957.1| flagellar biosynthesis protein [Brucella microti CCM 4915]
 gi|256111937|ref|ZP_05452888.1| flagellar biosynthesis protein FliP [Brucella melitensis bv. 3 str.
           Ether]
 gi|256262859|ref|ZP_05465391.1| flagellar transporter FliP [Brucella melitensis bv. 2 str. 63/9]
 gi|260568510|ref|ZP_05838979.1| flagellar transporter FliP [Brucella suis bv. 4 str. 40]
 gi|261215665|ref|ZP_05929946.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 3 str.
           Tulya]
 gi|261216798|ref|ZP_05931079.1| flagellar biosynthetic protein FliP [Brucella ceti M13/05/1]
 gi|261313730|ref|ZP_05952927.1| flagellar biosynthetic protein FliP [Brucella pinnipedialis
           M163/99/10]
 gi|261319028|ref|ZP_05958225.1| flagellar biosynthetic protein FliP [Brucella pinnipedialis B2/94]
 gi|261319665|ref|ZP_05958862.1| flagellar biosynthetic protein FliP [Brucella ceti M644/93/1]
 gi|261753162|ref|ZP_05996871.1| flagellar biosynthetic protein FliP [Brucella suis bv. 3 str. 686]
 gi|265993384|ref|ZP_06105941.1| flagellar biosynthetic protein FliP [Brucella melitensis bv. 3 str.
           Ether]
 gi|23463499|gb|AAN33367.1| flagellar biosynthetic protein FliP [Brucella suis 1330]
 gi|148369638|gb|ABQ62510.1| flagellar biosynthetic protein FliP [Brucella ovis ATCC 25840]
 gi|161337053|gb|ABX63357.1| flagellar biosynthetic protein FliP [Brucella canis ATCC 23365]
 gi|163675074|gb|ABY39184.1| flagellar biosynthetic protein FliP [Brucella suis ATCC 23445]
 gi|225616477|gb|EEH13525.1| flagellar biosynthetic protein FliP [Brucella ceti str. Cudo]
 gi|225642123|gb|ACO02036.1| flagellar biosynthetic protein FliP [Brucella melitensis ATCC
           23457]
 gi|255997608|gb|ACU49295.1| flagellar biosynthesis protein [Brucella microti CCM 4915]
 gi|260155175|gb|EEW90256.1| flagellar transporter FliP [Brucella suis bv. 4 str. 40]
 gi|260917272|gb|EEX84133.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 3 str.
           Tulya]
 gi|260921887|gb|EEX88455.1| flagellar biosynthetic protein FliP [Brucella ceti M13/05/1]
 gi|261292355|gb|EEX95851.1| flagellar biosynthetic protein FliP [Brucella ceti M644/93/1]
 gi|261298251|gb|EEY01748.1| flagellar biosynthetic protein FliP [Brucella pinnipedialis B2/94]
 gi|261302756|gb|EEY06253.1| flagellar biosynthetic protein FliP [Brucella pinnipedialis
           M163/99/10]
 gi|261742915|gb|EEY30841.1| flagellar biosynthetic protein FliP [Brucella suis bv. 3 str. 686]
 gi|262764254|gb|EEZ10286.1| flagellar biosynthetic protein FliP [Brucella melitensis bv. 3 str.
           Ether]
 gi|263092694|gb|EEZ16903.1| flagellar transporter FliP [Brucella melitensis bv. 2 str. 63/9]
 gi|326410341|gb|ADZ67405.1| flagellar biosynthesis protein FliP [Brucella melitensis M28]
 gi|326553633|gb|ADZ88272.1| flagellar biosynthesis protein FliP [Brucella melitensis M5-90]
          Length = 246

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 130/240 (54%), Positives = 175/240 (72%), Gaps = 4/240 (1%)

Query: 7   FALFLVTPELVFAKSSLHDVMNIPAD-LSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65
             L L       A+ +L     +PA   + S  IV+ FG+ T+LSIAP LLIMVT F RF
Sbjct: 9   VILTLALTVSAQAQQALPLDKLLPAGSGAASGQIVQLFGLLTVLSIAPGLLIMVTSFTRF 68

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
            I FS+LR+G+G+ + P ++V+ISLALFMTFYVM+P  DR+   G+QPLM N+IT+  A 
Sbjct: 69  AIAFSLLRSGLGLQTAPASMVMISLALFMTFYVMAPAFDRAWNNGVQPLMRNEITQEAAF 128

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
             +++PF  FM    R+KDL LF D+A  S R +D      +++R+L+P+FMISELRR F
Sbjct: 129 GEISQPFREFMMAQVRDKDLRLFEDLADPSFRTSDDGI---VDFRVLVPAFMISELRRGF 185

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           EIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW++LV +L++SF
Sbjct: 186 EIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245


>gi|66735095|gb|AAY53788.1| flagella export apparatus [Campylobacter jejuni]
          Length = 233

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 102/225 (45%), Positives = 155/225 (68%), Gaps = 4/225 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           +++  ++ P   +     +    + TIL++AP ++ ++T F R I+VFS LR  MG  S+
Sbjct: 12  TVNLSLSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSM 71

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PPN ++++LAL +TF++M P   +S   GI+P ++ +I    A  + A+PF  FM  NTR
Sbjct: 72  PPNTILVTLALILTFFIMEPVATKSYNEGIKPYLSEKIGYEEAFIKGAKPFKDFMLKNTR 131

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           EKDL+LF  + +  +  T     D +   +L+P+FMISEL+ +FEIGFLI  PFL+IDM+
Sbjct: 132 EKDLALFYRIRNLPNPKT----IDDVPLTVLVPAFMISELKTAFEIGFLIYQPFLVIDMV 187

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           V++++MAMGMMMLPPT ISLPFK++ FVL+DGW+LLV+ LV+SF+
Sbjct: 188 VSSVLMAMGMMMLPPTMISLPFKLLIFVLVDGWNLLVQRLVESFV 232


>gi|53717669|ref|YP_106655.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei
           K96243]
 gi|52208083|emb|CAH34013.1| flagellar biosynthetic protein [Burkholderia pseudomallei K96243]
          Length = 253

 Score =  208 bits (530), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 93/216 (43%), Positives = 140/216 (64%), Gaps = 4/216 (1%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P   +  +  V+T  + T+LS  P +L+M+T F R IIV S+LR  +G  S PP+ V++ 
Sbjct: 41  PNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQAIGTASTPPSQVLVG 100

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           LALF+T +VMSP LDR+     +P     +    A+QR   PF  FM   TRE DL+LF 
Sbjct: 101 LALFLTLFVMSPVLDRAYNDAYKPFSEGTLQMDQAVQRGTAPFKAFMLKQTRETDLALFA 160

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
            ++    +   +   + +   +L+P+F+ SEL+  F+IGF I +PFLIIDM+VA+++M+M
Sbjct: 161 KIS----KAAPMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSM 216

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMM+ P ++SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 217 GMMMVSPATVSLPFKLMLFVLVDGWQLLIGSLAQSF 252


>gi|283954390|ref|ZP_06371910.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283794007|gb|EFC32756.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 233

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 104/225 (46%), Positives = 155/225 (68%), Gaps = 4/225 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           +++  ++ P   +     +    + TIL++AP ++ ++T F R I+VFS LR  MG  S+
Sbjct: 12  TVNLSLSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSM 71

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PPN ++++LAL +TF++M P   +S   GI+P +  QI    A  + A+PF  FM  NTR
Sbjct: 72  PPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEQIGYEEAFVKGAKPFKDFMLKNTR 131

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           EKDL+LF  + +  +  T     D +   +L+P+FMISEL+ +FEIGFLI LPFL+IDM+
Sbjct: 132 EKDLALFYRIRNLPNPKT----IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMV 187

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           V++++MAMGMMMLPPT ISLPFK++ FVL+DGW+LLV+ LV+SF+
Sbjct: 188 VSSVLMAMGMMMLPPTMISLPFKLLIFVLVDGWNLLVQRLVESFV 232


>gi|197104388|ref|YP_002129765.1| flagellar biosynthesis protein FliP [Phenylobacterium zucineum
           HLK1]
 gi|196477808|gb|ACG77336.1| flagellar biosynthesis protein FliP [Phenylobacterium zucineum
           HLK1]
          Length = 245

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 99/219 (45%), Positives = 151/219 (68%), Gaps = 4/219 (1%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
           +++     ++  +V+  G+ T+LS+AP ++IM T F R ++V S+LRT +G+   PPN V
Sbjct: 24  IDLGTGAGLTERVVQLVGLLTVLSLAPSIVIMTTSFVRIVVVLSLLRTALGVQQSPPNAV 83

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           IISLALF+T  VM PT +RS + G++PL++ QI    A      P   FM +    +DL+
Sbjct: 84  IISLALFLTAIVMGPTFERSYQEGVKPLLDQQIELPQAFDAAGAPVKTFMLSQVDPEDLA 143

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
           LF+ ++      T     +    R++ P+FMISEL+R+FEIGFL+ +PFL+ID++VA+++
Sbjct: 144 LFVRLSRIPRPATM----EDTPLRVVTPAFMISELKRAFEIGFLLFIPFLVIDLVVASVL 199

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+MGMMMLPP ++SLPFK+IFFVL+DGW L+  +LV+SF
Sbjct: 200 MSMGMMMLPPVTVSLPFKLIFFVLVDGWRLVAGSLVESF 238


>gi|315928248|gb|EFV07564.1| flagellar biosynthetic protein FliP [Campylobacter jejuni subsp.
           jejuni DFVF1099]
          Length = 233

 Score =  208 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 103/225 (45%), Positives = 155/225 (68%), Gaps = 4/225 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           +++  ++ P   +     +    + TIL++AP ++ ++T F R I+VFS LR  MG  S+
Sbjct: 12  TVNLSLSAPNTPNQLVTTLNIVIVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSM 71

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PPN ++++LAL +TF++M P   +S   GI+P +  +I    A  + A+PF  FM  NTR
Sbjct: 72  PPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNTR 131

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           EKDL+LF  + +  +  T     D +   +L+P+FMISEL+ +FEIGFLI LPFL+IDM+
Sbjct: 132 EKDLALFYRIRNLPNPKT----IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMV 187

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           V++++MAMGMMMLPPT ISLPFK++ FVL+DGW+LLV+ LV+SF+
Sbjct: 188 VSSVLMAMGMMMLPPTMISLPFKLLIFVLVDGWNLLVQRLVESFV 232


>gi|300854220|ref|YP_003779204.1| flagellar biosynthesis protein FliP [Clostridium ljungdahlii DSM
           13528]
 gi|300434335|gb|ADK14102.1| flagellar biosynthesis protein FliP [Clostridium ljungdahlii DSM
           13528]
          Length = 266

 Score =  208 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 98/255 (38%), Positives = 149/255 (58%), Gaps = 13/255 (5%)

Query: 2   IRYCFFALFLVTPELVFAKSSLHDVMNIPA-----------DLSISTWIVRTFGIFTILS 50
           I    F + +     V+A       M IP                    ++     T+++
Sbjct: 13  ISILIFVILVFKAHSVYAAPDASQTMPIPNINVSMDNAGTSTPQQYVQNIKLLIFLTVIT 72

Query: 51  IAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMG 110
           + P  ++M+T F R I+VF  LR+ MG    PPN ++I LALFMT ++M P   +     
Sbjct: 73  LLPSFVMMMTSFVRIIVVFGFLRSAMGTQQSPPNSILIGLALFMTVFIMYPVYSKMNTNA 132

Query: 111 IQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYR 170
           I+P M N+IT+  AI   A+P   FM   T +KDL LF+D A  +++ T      +    
Sbjct: 133 IEPYMQNKITQQQAIDEGAKPIRSFMLKQTYKKDLQLFIDQAKLNYKVT--ADGQNAPLY 190

Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230
           +++P++MISEL+ +FEIGFLI +PF++IDM+V++++MAMGM MLPPT ISL FK++ FV+
Sbjct: 191 VVVPAYMISELKTAFEIGFLIYIPFMVIDMVVSSVLMAMGMFMLPPTMISLAFKLLLFVM 250

Query: 231 IDGWSLLVENLVKSF 245
           +DGW LLV++L+ SF
Sbjct: 251 VDGWYLLVKSLIVSF 265


>gi|332702322|ref|ZP_08422410.1| flagellar biosynthetic protein FliP [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552471|gb|EGJ49515.1| flagellar biosynthetic protein FliP [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 263

 Score =  208 bits (529), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 99/235 (42%), Positives = 143/235 (60%), Gaps = 7/235 (2%)

Query: 14  PELVFAKSSLHDVMNIPADLSISTWI---VRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
           P L +A+   H  M+I         +   +    + T+LS+AP +++ +T F R IIVF 
Sbjct: 31  PGLAWAQDIPHFSMSISGGQPEPEQVSLLLEIIFLLTVLSLAPAIIMTMTSFTRIIIVFH 90

Query: 71  ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
            LR  +G   +PP+ ++ISLA+FMTF +M PT        +QP M  +I    A+    +
Sbjct: 91  FLRQALGTQQMPPSQILISLAIFMTFVIMMPTAMAINNTALQPYMEERIGFKEALDNAQK 150

Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
           P   FM  +TREKDLS+F  +A     +      + +   +L  +F+ISEL+  F IGFL
Sbjct: 151 PLREFMFKHTREKDLSVFYSIAKIERPD----NREQVPTMLLTAAFVISELKTGFIIGFL 206

Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           I +PFLI+DM+VA+I++AMGMMMLPP  ISLPFKV+ FV++DGW+LL  +LV SF
Sbjct: 207 IYIPFLILDMVVASILLAMGMMMLPPVMISLPFKVLLFVMVDGWNLLTASLVNSF 261


>gi|50120649|ref|YP_049816.1| flagellar biosynthesis protein FliP [Pectobacterium atrosepticum
           SCRI1043]
 gi|49611175|emb|CAG74621.1| flagellar biosynthetic protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 258

 Score =  208 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 103/244 (42%), Positives = 151/244 (61%), Gaps = 4/244 (1%)

Query: 2   IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
           +RY      L     V+A+        +P      T  V+T    T L+  P  L+M+T 
Sbjct: 17  LRYGLAIGLLFMAPSVWAQLPGIVTQPLPNGGQSWTLSVQTLVFLTSLTFLPAALLMMTS 76

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F R IIV S+LR  +G  + PPN V++ L LF+TF+VMSP L+R  +    P   +QI+ 
Sbjct: 77  FTRIIIVLSLLRNALGTPTAPPNQVLLGLTLFLTFFVMSPVLNRVYDEAYLPFSQDQISM 136

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
             AI+R AEP   FM   TRE DL+LF  +A       +I   + +  R+L+P+F+ SEL
Sbjct: 137 EVAIERGAEPLREFMLRQTRETDLALFTRLAEIP----EIQGPEAVPMRVLLPAFVTSEL 192

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
           + +F+IGF + +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L
Sbjct: 193 KTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSL 252

Query: 242 VKSF 245
            +SF
Sbjct: 253 AQSF 256


>gi|167834870|ref|ZP_02461753.1| flagellar biosynthesis protein FliP [Burkholderia thailandensis
           MSMB43]
          Length = 253

 Score =  208 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 95/216 (43%), Positives = 141/216 (65%), Gaps = 4/216 (1%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P   +  +  V+T  + T+LS  P +L+M+T F R IIV S+LR  +G  S PPN V++ 
Sbjct: 41  PNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQALGTASTPPNQVLVG 100

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           LALF+T +VMSP LDR+     +P     +    A+QR A PF  FM   TRE DL+LF 
Sbjct: 101 LALFLTLFVMSPVLDRAYADAYKPFSEGTLQMDQAVQRGAAPFKTFMLKQTRETDLALFA 160

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
            ++    +   +   + +   +L+P+F+ SEL+  F+IGF I +PFLIIDM+VA+++M+M
Sbjct: 161 KIS----KAAPMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSM 216

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMM+ P ++SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 217 GMMMVSPATVSLPFKLMLFVLVDGWQLLIGSLAQSF 252


>gi|167717397|ref|ZP_02400633.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei
           DM98]
          Length = 244

 Score =  208 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 94/216 (43%), Positives = 140/216 (64%), Gaps = 4/216 (1%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P   +  +  V+T  + T+LS  P +L+M+T F R IIV S+LR  +G  S PPN V++ 
Sbjct: 32  PNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQAIGTASTPPNQVLVG 91

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           LALF+T +VMSP LDR+     +P     +    A+QR   PF  FM   TRE DL+LF 
Sbjct: 92  LALFLTLFVMSPVLDRAYNDAYKPFSEGTLQMDQAVQRGTAPFKAFMLKQTRETDLALFA 151

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
            ++    +   +   + +   +L+P+F+ SEL+  F+IGF I +PFLIIDM+VA+++M+M
Sbjct: 152 KIS----KAAPMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSM 207

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMM+ P ++SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 208 GMMMVSPATVSLPFKLMLFVLVDGWQLLIGSLAQSF 243


>gi|59712449|ref|YP_205225.1| flagellar biosynthesis protein FliP [Vibrio fischeri ES114]
 gi|197336177|ref|YP_002156668.1| flagellar biosynthesis protein [Vibrio fischeri MJ11]
 gi|59480550|gb|AAW86337.1| flagellar biosynthesis protein FliP [Vibrio fischeri ES114]
 gi|197317667|gb|ACH67114.1| flagellar biosynthesis protein [Vibrio fischeri MJ11]
          Length = 289

 Score =  208 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 88/219 (40%), Positives = 135/219 (61%), Gaps = 5/219 (2%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
                     +  ++  G+ T+L   P ++I++T F R ++V SILR  MG+   P N V
Sbjct: 74  TTNANGGEDYSVNLQILGLMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 133

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           II +A+F+TF++M+P  D+     IQP +N +IT   A      P   FM   TR KDL 
Sbjct: 134 IIGIAMFLTFFIMAPVFDKVNNTAIQPYINEEITAREAFDVAQVPMKEFMLAQTRVKDLE 193

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
            F++M+     N      + +   ++IP+F+ SEL+ +F+IGF++ LPFLIID++VA+++
Sbjct: 194 TFVNMSGVEAEN-----PEDVPITVVIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 248

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MAMGMMML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 249 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287


>gi|170751431|ref|YP_001757691.1| flagellar biosynthetic protein FliP [Methylobacterium radiotolerans
           JCM 2831]
 gi|170657953|gb|ACB27008.1| flagellar biosynthetic protein FliP [Methylobacterium radiotolerans
           JCM 2831]
          Length = 255

 Score =  208 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 98/215 (45%), Positives = 150/215 (69%), Gaps = 4/215 (1%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
                +   ++   + T+L++AP +L+M T F R ++V SILR+ +G  + PP  V++SL
Sbjct: 43  GAGGTTERALQLVALITVLAVAPSVLVMATAFTRIVVVLSILRSALGTQTAPPTAVLVSL 102

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           ALF+T +VM+PT   +   GI+PL+  +IT+  A +R + PF  FM  N REKDL LF+D
Sbjct: 103 ALFLTAFVMAPTGRAAYSAGIEPLIAGRITQAQAFERASAPFKTFMLRNVREKDLKLFLD 162

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           +A            + +   I+ P+FMISELRR+FEIGFL+ +PFLIID++VA+++MA+G
Sbjct: 163 LAKVPAPK----GPEDVGLEIVTPAFMISELRRAFEIGFLLFIPFLIIDLVVASVLMAVG 218

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMM+PP +++LPFK+IFFVL+DGW+L+  +LV+S+
Sbjct: 219 MMMVPPATVALPFKLIFFVLVDGWTLVAGSLVQSY 253


>gi|20807873|ref|NP_623044.1| flagellar biosynthesis protein FliP [Thermoanaerobacter
           tengcongensis MB4]
 gi|20516437|gb|AAM24648.1| Flagellar biosynthesis/type III secretory pathway protein
           [Thermoanaerobacter tengcongensis MB4]
          Length = 221

 Score =  208 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 95/223 (42%), Positives = 151/223 (67%), Gaps = 5/223 (2%)

Query: 23  LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82
           L ++++     S  +  ++   + T+L++AP +LIM+T F R +IV + LR  +G+  +P
Sbjct: 3   LSNLVSSVTSPSNLSTSLQIVLLLTVLTLAPSILIMMTSFTRIVIVLAFLRNALGLQQMP 62

Query: 83  PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142
           PN V+I LALF+TFY+M+P         I+P +  QI +  A QR  +P   FM   TR+
Sbjct: 63  PNQVLIGLALFLTFYIMAPVGYDINNNAIKPYVEGQINQYEAYQRAIKPLKNFMLRQTRQ 122

Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202
            DL+LF+++A        + K + +  R++IP+F+ISEL+ +FEIGF+I +PFL+ID+IV
Sbjct: 123 NDLALFVNLAKIK-----VDKVEDLPMRVVIPAFIISELKTAFEIGFIIYIPFLVIDIIV 177

Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           A+++M+MGM MLPP  ISLPFKV+ F+L+DGW+L+V++L+  F
Sbjct: 178 ASVLMSMGMFMLPPVLISLPFKVLLFILVDGWNLVVKSLILGF 220


>gi|254720604|ref|ZP_05182415.1| flagellar biosynthesis protein FliP [Brucella sp. 83/13]
 gi|265985644|ref|ZP_06098379.1| flagellar biosynthetic protein FliP [Brucella sp. 83/13]
 gi|306838566|ref|ZP_07471403.1| flagellar biosynthetic protein FliP [Brucella sp. NF 2653]
 gi|264664236|gb|EEZ34497.1| flagellar biosynthetic protein FliP [Brucella sp. 83/13]
 gi|306406352|gb|EFM62594.1| flagellar biosynthetic protein FliP [Brucella sp. NF 2653]
          Length = 246

 Score =  208 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 130/240 (54%), Positives = 174/240 (72%), Gaps = 4/240 (1%)

Query: 7   FALFLVTPELVFAKSSLHDVMNIPAD-LSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65
             L L       A+ +L     +PA   + S  IV+ FG+ T+LSIAP LLIMVT F RF
Sbjct: 9   VILTLALTVSAEAQQALTLDKLLPAGSGAASGQIVQLFGLLTVLSIAPGLLIMVTSFTRF 68

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
            I FS+LR+G+G+ + P ++V+ISLALFMTFYVM+P  DR+   G+QPLM N+IT+  A 
Sbjct: 69  AIAFSLLRSGLGLQTAPASMVMISLALFMTFYVMAPAFDRAWNNGVQPLMRNEITQEAAF 128

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
             +++PF  FM    R+KDL LF D+A  S R  D      +++R+L+P+FMISELRR F
Sbjct: 129 GEISQPFREFMMAQVRDKDLRLFEDLADPSFRTGDDGI---VDFRVLVPAFMISELRRGF 185

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           EIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW++LV +L++SF
Sbjct: 186 EIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245


>gi|253688962|ref|YP_003018152.1| flagellar biosynthetic protein FliP [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251755540|gb|ACT13616.1| flagellar biosynthetic protein FliP [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 258

 Score =  207 bits (528), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 105/244 (43%), Positives = 152/244 (62%), Gaps = 4/244 (1%)

Query: 2   IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
           +RY      L+    V+A+        +P      T  V+T    T L+  P  L+M+T 
Sbjct: 17  LRYGLAISLLLLAPSVWAQLPGIVTQPLPNGGQSWTLSVQTLVFLTSLTFIPAALLMMTS 76

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F R IIV S+LR  +G  + PPN V++ L LF+TF+VMSP L+R  E    P   +QI+ 
Sbjct: 77  FTRIIIVLSLLRNALGTPTAPPNQVLLGLTLFLTFFVMSPVLNRVYEEAYLPFSQDQISM 136

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
             AI+R AEP   FM   TRE DL+LF  +A       +I   + +  R+L+P+F+ SEL
Sbjct: 137 EVAIERGAEPVREFMLRQTRETDLALFTRLAEIP----EIQGPEAVPMRVLLPAFVTSEL 192

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
           + +F+IGF I +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L
Sbjct: 193 KTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSL 252

Query: 242 VKSF 245
            +SF
Sbjct: 253 AQSF 256


>gi|462610|sp|P34200|FLIP_PECCC RecName: Full=Flagellar biosynthetic protein fliP; AltName:
           Full=Flagellar biosynthetic protein mopC
 gi|296055|emb|CAA51476.1| mopC [Pectobacterium carotovorum]
          Length = 258

 Score =  207 bits (528), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 103/243 (42%), Positives = 151/243 (62%), Gaps = 4/243 (1%)

Query: 3   RYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCF 62
           RY      L     V+A+        +P      T  V+T  + T L+  P  L+M+T F
Sbjct: 18  RYGLAIGLLFMAPSVWAQLPGIVTQPLPNGGQSWTLSVQTLVLLTSLTFLPAALLMMTSF 77

Query: 63  PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122
            R IIV S+LR  +G  + PPN V++ L LF+TF+VMSP L+R  +    P   +QI+  
Sbjct: 78  TRIIIVLSLLRNALGTPTAPPNQVLLGLTLFLTFFVMSPVLNRVYDEAYLPFSQDQISME 137

Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182
            AI+R AEP   FM   TRE DL+LF  +A       +I   + +  R+L+P+F+ SEL+
Sbjct: 138 VAIERGAEPVREFMLRQTRETDLALFTRLAEIP----EIQGPEAVPMRVLLPAFVTSELK 193

Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
            +F+IGF + +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L 
Sbjct: 194 TAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLA 253

Query: 243 KSF 245
           +SF
Sbjct: 254 QSF 256


>gi|229544408|ref|ZP_04433466.1| flagellar biosynthetic protein FliP [Bacillus coagulans 36D1]
 gi|229324893|gb|EEN90570.1| flagellar biosynthetic protein FliP [Bacillus coagulans 36D1]
          Length = 221

 Score =  207 bits (528), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 95/217 (43%), Positives = 145/217 (66%), Gaps = 4/217 (1%)

Query: 29  IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
                   +  V+   + T+LS+AP +LI++T F R +IV S +RT +G  + PPN VI+
Sbjct: 9   SSTSGDTVSLSVKILLLMTVLSLAPSILILLTSFTRIVIVLSFVRTSLGTQTAPPNQVIV 68

Query: 89  SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
            LALF+TF++M+PT  +  +  + PL ++++T   A  +  +PF  FM   TR+KDL LF
Sbjct: 69  GLALFLTFFIMAPTFQQVNKQALTPLFHDKLTLEEAYDKAQKPFKEFMAKETRQKDLQLF 128

Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
           +D AH             I    L+P+F ISEL+ +F++GF+I +PFL+IDM+VA+++M+
Sbjct: 129 LDYAHKKQPK----SVQDIPMTTLVPAFTISELKTAFQMGFMIFIPFLVIDMVVASVLMS 184

Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MGMMMLPP  ISLPFK++ FVL+DGW L+V++L++SF
Sbjct: 185 MGMMMLPPVMISLPFKILLFVLVDGWYLVVKSLLESF 221


>gi|55977145|gb|AAV68366.1| FliP [Herminiimonas arsenicoxydans]
          Length = 271

 Score =  207 bits (528), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 92/233 (39%), Positives = 143/233 (61%), Gaps = 6/233 (2%)

Query: 15  ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIA--PILLIMVTCFPRFIIVFSIL 72
             +  ++ L  + + P      T+ +    +  +  ++  P +L+M+T F R IIV S+L
Sbjct: 42  AAMAQQAGLPALTSTPTPGGGQTYSLSLQTLLLLTGLSFLPAVLLMMTSFTRIIIVLSLL 101

Query: 73  RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132
           R  +G  S PPN VII L+LF+T +VMSP LD+      QP   N+I    A+ +   P 
Sbjct: 102 RQALGTQSSPPNQVIIGLSLFLTLFVMSPVLDKIYVDAYQPFSANKIQMGEALDKAVAPL 161

Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192
             FM   TRE DL+L++ M+       ++   + I  RIL+P+F+ SEL+ +F+I F I 
Sbjct: 162 KTFMIKQTRESDLALYVKMSKGP----ELQGPEDIPLRILVPAFITSELKTAFQISFAIF 217

Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +PFLIIDM+VA+++M+MGMMM+ P  ++LPFK++ FVL+DGW LL+ +L +SF
Sbjct: 218 IPFLIIDMVVASVLMSMGMMMVSPAIVALPFKLMLFVLVDGWQLLIGSLAQSF 270


>gi|254478865|ref|ZP_05092229.1| flagellar biosynthetic protein FliP [Carboxydibrachium pacificum
           DSM 12653]
 gi|214035178|gb|EEB75888.1| flagellar biosynthetic protein FliP [Carboxydibrachium pacificum
           DSM 12653]
          Length = 221

 Score =  207 bits (528), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 94/223 (42%), Positives = 150/223 (67%), Gaps = 5/223 (2%)

Query: 23  LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82
           L ++++     S  +  ++   + T+L++AP +LIM+T F R +IV + LR  +G+  +P
Sbjct: 3   LSNLVSSVTSPSNLSTSLQIVLLLTVLTLAPSILIMMTSFTRIVIVLAFLRNALGLQQMP 62

Query: 83  PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142
           PN V+I LALF+TFY+M+P         I+P +  QI +  A +R  +P   FM   TR+
Sbjct: 63  PNQVLIGLALFLTFYIMAPVGYDINNNAIKPYVEGQINQYEAYERAIKPLKSFMLRQTRQ 122

Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202
            DL+LF+++A          K + +  R++IP+F+ISEL+ +FEIGF+I +PFL+ID+IV
Sbjct: 123 NDLALFVNLAKIK-----ADKVEDLPMRVVIPAFIISELKTAFEIGFIIYIPFLVIDIIV 177

Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           A+++M+MGM MLPP  ISLPFKV+ F+L+DGW+L+V++L+  F
Sbjct: 178 ASVLMSMGMFMLPPVLISLPFKVLLFILVDGWNLVVKSLILGF 220


>gi|209522296|ref|ZP_03270923.1| flagellar biosynthetic protein FliP [Burkholderia sp. H160]
 gi|209497272|gb|EDZ97500.1| flagellar biosynthetic protein FliP [Burkholderia sp. H160]
          Length = 273

 Score =  207 bits (528), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 96/235 (40%), Positives = 146/235 (62%), Gaps = 7/235 (2%)

Query: 15  ELVFAKSSLHDVMNI---PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
            L FA+++          P   +  +  V+T  + T+LS  P +++M+T F R +IV S+
Sbjct: 43  TLSFAQTAGLPAFTTSPGPNGGTTYSLSVQTMLLLTMLSFLPAMVLMMTSFTRIVIVLSL 102

Query: 72  LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
           LR  +G  + PPN V++ LALF+T +VMSP LD++   G +P     +    A+ R   P
Sbjct: 103 LRQALGTTTTPPNQVLVGLALFLTLFVMSPVLDKAYNEGYKPFSEGTMPMDQAVSRGVAP 162

Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
           F  FM   TRE DL+LF  ++H       +   + +   +L+PSF+ SEL+  F IGF I
Sbjct: 163 FKTFMLRQTRESDLALFARISH----AAPMQGPEDVPLSLLVPSFVTSELKTGFTIGFTI 218

Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
            +PFLIIDM+VA+++M+MGMMM+ P +ISLPFK++ FVL+DGW LL+ +L +SF+
Sbjct: 219 FIPFLIIDMVVASVLMSMGMMMVSPATISLPFKLMLFVLVDGWQLLLGSLAQSFV 273


>gi|302343742|ref|YP_003808271.1| flagellar biosynthetic protein FliP [Desulfarculus baarsii DSM
           2075]
 gi|301640355|gb|ADK85677.1| flagellar biosynthetic protein FliP [Desulfarculus baarsii DSM
           2075]
          Length = 258

 Score =  207 bits (528), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 90/209 (43%), Positives = 142/209 (67%), Gaps = 4/209 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  ++   + T+L++AP +L+M T F R  + FS+LR  +G   VPP  +I+ L+LF+TF
Sbjct: 53  STALQIVILLTVLTLAPAILVMTTSFVRIAVSFSLLRNALGAPQVPPTQIIVGLSLFLTF 112

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           ++M+P  D+  +  ++P ++  I+++   +  A+P   FM   TR+KDL LFM +A    
Sbjct: 113 FIMAPVFDQVHDKALKPYLDGAISQSAFFEEAAKPMREFMLKQTRKKDLGLFMKIAGEDR 172

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
              +      +    L+P+F+ISELR +FEIGFL+ +PFL+IDM+VA+++++MGMMMLPP
Sbjct: 173 PRNE----QDVTMSALVPAFVISELRTAFEIGFLLYVPFLVIDMVVASVLLSMGMMMLPP 228

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             ISLPFK++ FVL+DGW LLV +LV+SF
Sbjct: 229 VMISLPFKLMLFVLVDGWYLLVGSLVRSF 257


>gi|221069288|ref|ZP_03545393.1| flagellar biosynthetic protein FliP [Comamonas testosteroni KF-1]
 gi|220714311|gb|EED69679.1| flagellar biosynthetic protein FliP [Comamonas testosteroni KF-1]
          Length = 249

 Score =  207 bits (528), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 93/227 (40%), Positives = 143/227 (62%), Gaps = 4/227 (1%)

Query: 19  AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           A +SL  ++   A  +  +  ++T   FT LS  P +L+++T F R +IV S+LR  +G 
Sbjct: 25  APASLPLLVGQGAGGTSYSVPIQTLLFFTALSFLPAILLLMTGFTRIVIVLSLLRQALGT 84

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
            S PPN V+I L+LF+T +VM PTLD+  +    P   N I+   AI++   P   FM  
Sbjct: 85  QSAPPNQVVIGLSLFLTMFVMGPTLDKVYQDAYLPYTQNSISFEQAIEKAEAPMRGFMLK 144

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
            TR+ D +LF  +A      T     +    R+L+P+F+ SEL+ +F+IGF+I +PFLII
Sbjct: 145 QTRQSDFALFKRLAKLDANVT----AETAPLRVLVPAFVTSELKTAFQIGFMIFIPFLII 200

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           DM+V++I+M++GMMML P  ++LPFK++ FVL DGW+L++ +L  SF
Sbjct: 201 DMVVSSILMSLGMMMLSPVLVALPFKLMLFVLADGWNLIIGSLAASF 247


>gi|205356321|ref|ZP_03223086.1| putative lipoprotein [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205345706|gb|EDZ32344.1| putative lipoprotein [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 233

 Score =  207 bits (528), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 103/225 (45%), Positives = 154/225 (68%), Gaps = 4/225 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           +++  ++ P   +     +    + TIL +AP ++ ++T F R I+VFS LR  MG  S+
Sbjct: 12  TVNLNLSAPNTPNQLVTTLNIVIVLTILVLAPSIVFVMTSFLRLIVVFSFLRQAMGTQSM 71

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PPN ++++LAL +TF++M P   +S   GI+P +  +I    A  + A+PF  FM  NTR
Sbjct: 72  PPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNTR 131

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           EKDL+LF  + +  +  T     D +   +L+P+FMISEL+ +FEIGFLI LPFL+IDM+
Sbjct: 132 EKDLALFYRIRNLPNPKT----IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMV 187

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           V++++MAMGMMMLPPT ISLPFK++ FVL+DGW+LLV+ LV+SF+
Sbjct: 188 VSSVLMAMGMMMLPPTMISLPFKLLIFVLVDGWNLLVQRLVESFV 232


>gi|74317628|ref|YP_315368.1| flagellar biosynthesis protein FliP [Thiobacillus denitrificans
           ATCC 25259]
 gi|74057123|gb|AAZ97563.1| flagellar transport protein FliP [Thiobacillus denitrificans ATCC
           25259]
          Length = 253

 Score =  207 bits (528), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 102/235 (43%), Positives = 146/235 (62%), Gaps = 7/235 (2%)

Query: 14  PELVFAKS-SLHDVMNIPADLSISTWIVRTFGIFTILSIA--PILLIMVTCFPRFIIVFS 70
           P    A+S  L    + P+     T+ +    +  + S++  P  L+M+T F R IIV S
Sbjct: 22  PTFALAQSAGLPAFTSTPSGGGGQTYTLSLQTLLLLTSLSFLPAALLMMTSFTRIIIVLS 81

Query: 71  ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
           +LR  +G  S PPN V+I LALF+T +VM PT D+      QPL  N+I    A+ + A 
Sbjct: 82  LLRHALGTQSSPPNQVLIGLALFLTLFVMGPTFDKIYVEAYQPLAENRIQMQEALDKGAV 141

Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
           P   FM   TRE DL+LF+ M+ S    T       I  R+LIP+++ SEL+ +F+IGF 
Sbjct: 142 PLRAFMLKQTRESDLALFVKMSRSPAPKTAA----DIPMRVLIPAYITSELKTAFQIGFA 197

Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           + +PFLIIDM+VA+I+MAMGMMM+ P  ++LPFK+I FVL+DGW+LL+ +L +SF
Sbjct: 198 VFIPFLIIDMVVASILMAMGMMMVSPAIVALPFKIILFVLVDGWNLLLGSLAQSF 252


>gi|83944189|ref|ZP_00956645.1| flagellar biosynthesis protein [Sulfitobacter sp. EE-36]
 gi|83955110|ref|ZP_00963766.1| flagellar biosynthesis protein [Sulfitobacter sp. NAS-14.1]
 gi|83840439|gb|EAP79612.1| flagellar biosynthesis protein [Sulfitobacter sp. NAS-14.1]
 gi|83845056|gb|EAP82937.1| flagellar biosynthesis protein [Sulfitobacter sp. EE-36]
          Length = 274

 Score =  207 bits (528), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 114/221 (51%), Positives = 159/221 (71%), Gaps = 1/221 (0%)

Query: 26  VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
                   S+S  +++ F I T+LS+AP LL+MVT F RF+IVFS+LR  +G+   PPN+
Sbjct: 53  TPGTDEGASLSGRLIQLFAIITVLSVAPGLLVMVTSFTRFVIVFSMLRLALGLNQTPPNI 112

Query: 86  VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145
           V+ ++ALFMTF+VM P  + + E G+ PLM N I E  A++ ++EPF+ FM  NTR+KDL
Sbjct: 113 VLNAMALFMTFFVMQPVFEDAWEGGLVPLMENAIIEEQAVRNISEPFYNFMLVNTRDKDL 172

Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
            LF D+A  +   +D        +R+L+PSFMISELRR+F IGFLI LPF+ ID+IVA++
Sbjct: 173 QLFTDIADEASPPSDGPAA-LPSWRVLVPSFMISELRRAFTIGFLIYLPFIAIDLIVASV 231

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +M+ GMMMLPP  +SLPFKVIFFVLIDGW +L  +L++S++
Sbjct: 232 LMSAGMMMLPPVLVSLPFKVIFFVLIDGWYMLAGSLIQSYV 272


>gi|329890585|ref|ZP_08268928.1| flagellar biosynthetic protein FliP [Brevundimonas diminuta ATCC
           11568]
 gi|328845886|gb|EGF95450.1| flagellar biosynthetic protein FliP [Brevundimonas diminuta ATCC
           11568]
          Length = 238

 Score =  207 bits (528), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 95/228 (41%), Positives = 148/228 (64%), Gaps = 4/228 (1%)

Query: 18  FAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMG 77
            A+      +++ +   ++  +V+  G+ T+LS+AP ++IM T F R ++V S+LRT +G
Sbjct: 8   AAQGGSAINIDLGSGAGLTQRVVQLVGLMTVLSLAPSIVIMTTSFVRIVVVLSLLRTALG 67

Query: 78  MGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMR 137
           M   PPN V++SLALF++  VM PT   + + GI+PLM+ Q+    A    +EP   FM 
Sbjct: 68  MQQSPPNAVLVSLALFLSAIVMGPTWQDAYDSGIRPLMDQQMELPQAFDAASEPVKTFML 127

Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197
              +  DL+LF  ++              +  R++ P+FMISEL+ +F IGFL+ +PFL+
Sbjct: 128 AQVKPDDLALFTRLSRVEAP----ADVQDLPLRVVTPAFMISELKTAFTIGFLLFVPFLV 183

Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ID++VA+++M+MGMMMLPP  +SLPFK+IFFVL+DGW L+  +LV+SF
Sbjct: 184 IDLVVASVLMSMGMMMLPPVVVSLPFKLIFFVLVDGWRLVAGSLVESF 231


>gi|256158112|ref|ZP_05456030.1| flagellar biosynthesis protein FliP [Brucella ceti M490/95/1]
 gi|256252934|ref|ZP_05458470.1| flagellar biosynthesis protein FliP [Brucella ceti B1/94]
 gi|261220025|ref|ZP_05934306.1| flagellar biosynthetic protein FliP [Brucella ceti B1/94]
 gi|265996629|ref|ZP_06109186.1| flagellar biosynthetic protein FliP [Brucella ceti M490/95/1]
 gi|260918609|gb|EEX85262.1| flagellar biosynthetic protein FliP [Brucella ceti B1/94]
 gi|262550926|gb|EEZ07087.1| flagellar biosynthetic protein FliP [Brucella ceti M490/95/1]
          Length = 246

 Score =  207 bits (528), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 129/240 (53%), Positives = 174/240 (72%), Gaps = 4/240 (1%)

Query: 7   FALFLVTPELVFAKSSLHDVMNIPAD-LSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65
             L         A+ +L     +PA   + S  IV+ FG+ T+LSIAP LLIMVT F RF
Sbjct: 9   VILTFALTVSAQAQQALPLDKLLPAGSGAASGQIVQLFGLLTVLSIAPGLLIMVTSFTRF 68

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
            I FS+LR+G+G+ + P ++V+ISLALFMTFYVM+P  DR+   G+QPLM N+IT+  A 
Sbjct: 69  AIAFSLLRSGLGLQTAPASMVMISLALFMTFYVMAPAFDRAWNNGVQPLMRNEITQEAAF 128

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
             +++PF  FM    R+KDL LF D+A  S R +D      +++R+L+P+FMISELRR F
Sbjct: 129 GEISQPFREFMMAQVRDKDLRLFEDLADPSFRTSDDGI---VDFRVLVPAFMISELRRGF 185

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           EIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW++LV +L++SF
Sbjct: 186 EIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245


>gi|308184472|ref|YP_003928605.1| flagellar biosynthesis protein FliP [Helicobacter pylori SJM180]
 gi|308060392|gb|ADO02288.1| flagellar biosynthesis protein FliP [Helicobacter pylori SJM180]
          Length = 301

 Score =  207 bits (528), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 106/244 (43%), Positives = 163/244 (66%), Gaps = 6/244 (2%)

Query: 4   YCFFALFLVTPELVF--AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
           +      L+ P +    A  S++  +N P+D       +    + T+L +AP L++++T 
Sbjct: 59  FLILICPLICPLMSADSALPSVNLSLNAPSDPKQLVTTLNVIALLTLLVLAPSLILVMTS 118

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F R I+VFS LRT +G    PP  +++SL+L +TF++M P+L ++ + GI+P M+ +I+ 
Sbjct: 119 FTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISY 178

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
           T A ++ A PF  FM  NTREKDL+LF  + +  +  T     D +   +LIP+FMISEL
Sbjct: 179 TEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISEL 234

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
           + +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LL ENL
Sbjct: 235 KTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENL 294

Query: 242 VKSF 245
           V SF
Sbjct: 295 VASF 298


>gi|62317108|ref|YP_222961.1| flagellar biosynthesis protein FliP [Brucella abortus bv. 1 str.
           9-941]
 gi|83269100|ref|YP_418391.1| flagellar biosynthesis protein FliP [Brucella melitensis biovar
           Abortus 2308]
 gi|189022373|ref|YP_001932114.1| flagellar biosynthesis protein FliP [Brucella abortus S19]
 gi|237816670|ref|ZP_04595662.1| flagellar biosynthetic protein FliP [Brucella abortus str. 2308 A]
 gi|254691406|ref|ZP_05154660.1| flagellar biosynthesis protein FliP [Brucella abortus bv. 6 str.
           870]
 gi|254698391|ref|ZP_05160219.1| flagellar biosynthesis protein FliP [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254731838|ref|ZP_05190416.1| flagellar biosynthesis protein FliP [Brucella abortus bv. 4 str.
           292]
 gi|256256592|ref|ZP_05462128.1| flagellar biosynthesis protein FliP [Brucella abortus bv. 9 str.
           C68]
 gi|260544347|ref|ZP_05820168.1| flagellar transporter FliP [Brucella abortus NCTC 8038]
 gi|260757020|ref|ZP_05869368.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 6 str.
           870]
 gi|260759608|ref|ZP_05871956.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 4 str.
           292]
 gi|260762850|ref|ZP_05875182.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260882830|ref|ZP_05894444.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 9 str.
           C68]
 gi|297249948|ref|ZP_06933649.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 5 str.
           B3196]
 gi|62197301|gb|AAX75600.1| FliP, flagellar biosynthetic protein [Brucella abortus bv. 1 str.
           9-941]
 gi|82939374|emb|CAJ12324.1| Flagellar transport protein FliP:Type III secretion system inner
           membrane P protein [Brucella melitensis biovar Abortus
           2308]
 gi|189020947|gb|ACD73668.1| Flagellar transport protein FliP [Brucella abortus S19]
 gi|237787483|gb|EEP61699.1| flagellar biosynthetic protein FliP [Brucella abortus str. 2308 A]
 gi|260097618|gb|EEW81492.1| flagellar transporter FliP [Brucella abortus NCTC 8038]
 gi|260669926|gb|EEX56866.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 4 str.
           292]
 gi|260673271|gb|EEX60092.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260677128|gb|EEX63949.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 6 str.
           870]
 gi|260872358|gb|EEX79427.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 9 str.
           C68]
 gi|297173817|gb|EFH33181.1| flagellar biosynthetic protein FliP [Brucella abortus bv. 5 str.
           B3196]
          Length = 246

 Score =  207 bits (528), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 130/240 (54%), Positives = 175/240 (72%), Gaps = 4/240 (1%)

Query: 7   FALFLVTPELVFAKSSLHDVMNIPAD-LSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65
             L L       A+ +L     +PA   + S  IV+ FG+ T+LSIAP LLIMVT F RF
Sbjct: 9   VILTLALTVSAQAQQALPLDKLLPAGSGAASGQIVQLFGLLTVLSIAPGLLIMVTSFTRF 68

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
            I FS+LR+G+G+ + P ++V+ISLALFMTFYVM+P  DR+   G+QPLM N+IT+  A 
Sbjct: 69  AIAFSLLRSGLGLQTAPASMVMISLALFMTFYVMAPAFDRAWNNGVQPLMRNEITQEAAF 128

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
             +++PF  FM    R+KDL LF D+A  S R +D      +++R+L+P+FMISELRR F
Sbjct: 129 GEISQPFREFMMAQVRDKDLCLFEDLADPSFRTSDDGI---VDFRVLVPAFMISELRRGF 185

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           EIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW++LV +L++SF
Sbjct: 186 EIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245


>gi|167579277|ref|ZP_02372151.1| flagellar biosynthesis protein FliP [Burkholderia thailandensis
           TXDOH]
 gi|167617383|ref|ZP_02386014.1| flagellar biosynthesis protein FliP [Burkholderia thailandensis
           Bt4]
          Length = 253

 Score =  207 bits (528), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 93/216 (43%), Positives = 140/216 (64%), Gaps = 4/216 (1%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P   +  +  V+T  + T+LS  P +L+M+T F R IIV S+LR  +G  S PPN V++ 
Sbjct: 41  PNGGTTYSLSVQTMLLLTMLSFLPAMLLMMTSFTRIIIVLSLLRQAIGTASTPPNQVLVG 100

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           LALF+T +VMSP LD++     +P     +    A+QR   PF  FM   TRE DL+LF 
Sbjct: 101 LALFLTLFVMSPVLDKAYTDAYKPFSEGTLQMDQAVQRGTAPFKTFMLKQTRETDLALFA 160

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
            ++    +   +   + +   +L+P+F+ SEL+  F+IGF I +PFLIIDM+VA+++M+M
Sbjct: 161 KIS----KAAPMQGPEDVPLSLLVPAFVTSELKTGFQIGFTIFIPFLIIDMVVASVLMSM 216

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMM+ P ++SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 217 GMMMVSPATVSLPFKLMLFVLVDGWQLLIGSLAQSF 252


>gi|306846272|ref|ZP_07478833.1| flagellar biosynthetic protein FliP [Brucella sp. BO1]
 gi|306273267|gb|EFM55136.1| flagellar biosynthetic protein FliP [Brucella sp. BO1]
          Length = 246

 Score =  207 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 130/240 (54%), Positives = 174/240 (72%), Gaps = 4/240 (1%)

Query: 7   FALFLVTPELVFAKSSLHDVMNIPAD-LSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65
             L L       A+ +L     +PA   + S  IV+ FG+ T+LSIAP LLIMVT F RF
Sbjct: 9   VILTLALTVSAQAQQALTLDKLLPAGSGAASGQIVQLFGLLTVLSIAPGLLIMVTSFTRF 68

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
            I FS+LR+G+G+ + P ++V+ISLALFMTFYVM+P  DR+ + G+QPLM N+IT+  A 
Sbjct: 69  AIAFSLLRSGLGLQTAPASMVMISLALFMTFYVMAPAFDRAWDNGVQPLMRNEITQEAAF 128

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
             +++PF  FM    R KDL LF D+A  S R  D      +++R+L+P+FMISELRR F
Sbjct: 129 GEISQPFREFMMAQVRGKDLRLFEDLADPSFRTGDDGI---VDFRVLVPAFMISELRRGF 185

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           EIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW++LV +L++SF
Sbjct: 186 EIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245


>gi|57242347|ref|ZP_00370286.1| flagellar biosynthetic protein FliP [Campylobacter upsaliensis
           RM3195]
 gi|57017027|gb|EAL53809.1| flagellar biosynthetic protein FliP [Campylobacter upsaliensis
           RM3195]
          Length = 244

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 108/245 (44%), Positives = 162/245 (66%), Gaps = 7/245 (2%)

Query: 5   CFFALFLVTPELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
             F L L    +  A++++  V   ++ P   +     +    + TIL++AP ++ ++T 
Sbjct: 3   SVFLLILFALSVFGAEATIPTVNLSLSAPDTPNQLVTTLNIIIVLTILALAPSIIFIMTS 62

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F R IIVFS LR  MG  S+PPN +++++AL +TF++M P   +S   G++P ++ QI  
Sbjct: 63  FLRLIIVFSFLRQAMGTQSMPPNTILVTMALILTFFIMEPVATKSYNEGVKPYLSEQIGY 122

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
             A  R A+PF  FM  NTREKDL+LF  + +  +  T     D +   +L+P+FMISEL
Sbjct: 123 EEAFVRGAKPFKDFMLKNTREKDLALFYRIRNLPNPKT----IDDVPLSVLVPAFMISEL 178

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
           + +FEIGFLI LPFL+IDM+V++++MAMGMMMLPP  ISLPFK++ FVL+DGW+LLV+ L
Sbjct: 179 KTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPVMISLPFKLLIFVLVDGWNLLVQRL 238

Query: 242 VKSFI 246
           V+SF+
Sbjct: 239 VESFV 243


>gi|317121829|ref|YP_004101832.1| flagellar biosynthetic protein FliP [Thermaerobacter marianensis
           DSM 12885]
 gi|315591809|gb|ADU51105.1| flagellar biosynthetic protein FliP [Thermaerobacter marianensis
           DSM 12885]
          Length = 227

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 84/194 (43%), Positives = 132/194 (68%), Gaps = 4/194 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +LIM+T F R ++  S LR+ +G    PPN V++ LALF+T +VM+P   +  +   
Sbjct: 34  APAILIMMTGFTRIVVALSFLRSALGTQQAPPNQVLVGLALFLTVFVMAPVWQQVYQDAW 93

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
            P  + QI +  A+QR  +P   FM   TRE+DL+LF++++        +   D +   +
Sbjct: 94  VPYRDGQIGQVEALQRAQQPVREFMFRYTRERDLALFLELSGRG----PVESRDQVPTYV 149

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           LIP+F ISEL+ +F+IGF++ +PFL+IDM+VA+ +M+MGM+M+PP  +SLPFK++ FVL+
Sbjct: 150 LIPAFAISELKTAFQIGFILYVPFLVIDMVVASTLMSMGMLMVPPMLVSLPFKILLFVLV 209

Query: 232 DGWSLLVENLVKSF 245
           DGW+L+V +L+ SF
Sbjct: 210 DGWNLVVRSLLASF 223


>gi|315498438|ref|YP_004087242.1| flagellar biosynthetic protein flip [Asticcacaulis excentricus CB
           48]
 gi|315416450|gb|ADU13091.1| flagellar biosynthetic protein FliP [Asticcacaulis excentricus CB
           48]
          Length = 268

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 95/245 (38%), Positives = 158/245 (64%), Gaps = 7/245 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           ++        ++ P  V A+S     +++    +++  +V+  G+ T+LS+AP ++IM T
Sbjct: 23  LLGGILGFALMIFPGDVLAQSV---NLDLGQGGTLTARVVQMLGLLTVLSLAPSIVIMTT 79

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R ++V S+LRT +G+   PPN V+ISLA+F++  VM+PT   + + GI+PLM+ ++ 
Sbjct: 80  SFIRIVVVLSLLRTALGLQQSPPNAVLISLAMFLSAVVMAPTYQAAYDAGIRPLMDQEME 139

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A    +EP   FM +     DL+LF+ ++       ++     +   ++ P+FMISE
Sbjct: 140 MPQAFDAASEPVKTFMLSQVDAGDLNLFIRLSKVEKPKDNM----DLPITVITPAFMISE 195

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +F IGFL+ +PFL+ID++VA+++M+MGMMMLPP  +SLPFK+IFFVL+DGW L+  +
Sbjct: 196 LKTAFLIGFLLFIPFLVIDLVVASVLMSMGMMMLPPVVVSLPFKLIFFVLVDGWRLVCGS 255

Query: 241 LVKSF 245
           LV+SF
Sbjct: 256 LVESF 260


>gi|260899945|ref|ZP_05908340.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus
           AQ4037]
 gi|308107285|gb|EFO44825.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus
           AQ4037]
          Length = 289

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 92/219 (42%), Positives = 137/219 (62%), Gaps = 5/219 (2%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
              P      +  ++   + T+L   P ++I++T F R ++V SILR  MG+   P N V
Sbjct: 74  TTNPDGSEDYSVTLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 133

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           II +ALF+TF+VMSP L+   +  IQP +N Q+T   A      P   FM   TR KDL 
Sbjct: 134 IIGIALFLTFFVMSPVLNEINDTAIQPYLNEQVTAREAFDAAQVPMKAFMLKQTRIKDLE 193

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
            F++M+        +T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++
Sbjct: 194 TFVNMSG-----EQVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 248

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MAMGMMML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 249 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287


>gi|269961630|ref|ZP_06175992.1| Flagellar biosynthetic protein fliP [Vibrio harveyi 1DA3]
 gi|269833671|gb|EEZ87768.1| Flagellar biosynthetic protein fliP [Vibrio harveyi 1DA3]
          Length = 289

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 89/209 (42%), Positives = 137/209 (65%), Gaps = 5/209 (2%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  ++   + T+L   P ++I++T F R ++V SILR  MG+   P N VII +ALF+TF
Sbjct: 84  SVTLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTF 143

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           ++MSP L+   +  +QP +N Q+T   A      P   FM   TR KDL  F++M+    
Sbjct: 144 FIMSPVLNEINDQAVQPYLNEQVTAREAFDAAQAPMKAFMLKQTRIKDLETFVNMSG--- 200

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
              ++T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGMMML P
Sbjct: 201 --EEVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGMMMLSP 258

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 259 MIVSLPFKLMLFVLVDGWNLILSTLAGSF 287


>gi|188586035|ref|YP_001917580.1| flagellar biosynthetic protein FliP [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350722|gb|ACB84992.1| flagellar biosynthetic protein FliP [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 255

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 89/193 (46%), Positives = 127/193 (65%), Gaps = 4/193 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P LLI+ T F R +IV S +R  +    +PPN V+I LALF+TF++MSP      +   +
Sbjct: 66  PALLILTTSFTRVVIVLSFIRNALATQQMPPNQVLIGLALFLTFFIMSPVWGDVYQEAWE 125

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P     IT+  AI+   EP   FM   TRE DL+LF++ +   +  T     + +   ++
Sbjct: 126 PYREGDITQEEAIENGLEPVREFMYQQTREDDLALFVEYSDIENPAT----IEDVPTHVI 181

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           IP+F+ISEL+ +F+IGF+I +PFLIIDMIVA+ +M+MGM+MLPP  ISLPFKV+ FVL+D
Sbjct: 182 IPAFVISELKTAFQIGFMIFVPFLIIDMIVASTLMSMGMLMLPPVMISLPFKVLLFVLVD 241

Query: 233 GWSLLVENLVKSF 245
           GW L+  +L+ SF
Sbjct: 242 GWFLITRSLLISF 254


>gi|284007164|emb|CBA72448.1| flagellar biosynthesis protein FliP [Arsenophonus nasoniae]
          Length = 245

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 95/247 (38%), Positives = 149/247 (60%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           M R  F     +    + A +++  + + P      +W   V+T    T L   P LL+M
Sbjct: 1   MRRLLFLLSNTLFWLPLHAYAAIPAITSQPLANGGQSWSLPVQTLIFITALGFIPALLLM 60

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
            T F R IIV  +LR  +G  + PPN +++ LALFMTF+VMSP  D+  +    P    +
Sbjct: 61  TTSFTRIIIVLGLLRNALGTPTAPPNQILLGLALFMTFFVMSPVFDKIYQNAYLPFSEEK 120

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           IT    +   A+P   FM   TR+ DL+LF  +A+ S   T       +  RIL+P+F+ 
Sbjct: 121 ITIEVDLSEGAKPLRQFMLQQTRQPDLALFARLANDSEYQTQA----DVPMRILVPAFIT 176

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF++ +PFLIID++VA+++MA+GMMM+PP ++++PFK++ FVL+DGW L++
Sbjct: 177 SELKTAFQIGFMLFIPFLIIDLVVASVLMALGMMMVPPATVAMPFKLMLFVLVDGWQLIL 236

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 237 GSLAQSF 243


>gi|158320529|ref|YP_001513036.1| flagellar biosynthetic protein FliP [Alkaliphilus oremlandii
           OhILAs]
 gi|158140728|gb|ABW19040.1| flagellar biosynthetic protein FliP [Alkaliphilus oremlandii
           OhILAs]
          Length = 269

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 95/250 (38%), Positives = 160/250 (64%), Gaps = 7/250 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSS-----LHDVMNIPADLSISTWIVRTFGIFTILSIAPIL 55
           M  +      ++     FA+ +     L   ++  +    +   ++   + TILS+AP +
Sbjct: 21  MACFIIICFIVLGSNQAFAQPNITVPNLQLSIDGASSPEETVNSLQLLSLLTILSLAPAI 80

Query: 56  LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115
           LIMVT F R IIV S LR  +     PP  V+I LALF+TF++M+P      +  +QP +
Sbjct: 81  LIMVTSFTRIIIVLSFLRNALATQQTPPTQVLIGLALFLTFFIMAPVASEINQNALQPFL 140

Query: 116 NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPS 175
           N +IT+  A++   +P   FM   TREKDL+LF++ ++S    ++  + + I+   LIP+
Sbjct: 141 NQEITQQQAVEEAMDPLREFMFRQTREKDLALFIEASNSEV--SENFQVEDIKTTTLIPA 198

Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235
           F+ISEL+ +F++GF++ +PF+++DM+VA+++M+MGMMMLPP  ISLPFK++ FV++DGW+
Sbjct: 199 FIISELKTAFQMGFVLFIPFIVLDMVVASVLMSMGMMMLPPAMISLPFKLMLFVMVDGWN 258

Query: 236 LLVENLVKSF 245
           +L+++L+ SF
Sbjct: 259 VLIKSLLLSF 268


>gi|74055044|gb|AAZ95849.1| FliP [Aeromonas hydrophila]
          Length = 259

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 92/220 (41%), Positives = 140/220 (63%), Gaps = 5/220 (2%)

Query: 26  VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
           +  +       +  ++   + T LS  P ++IM+T F R IIV  ILR  +G+   P N 
Sbjct: 39  IKTMADGSQEYSLTLQVLALMTALSFLPAMVIMMTSFTRIIIVLGILRQAIGLQQSPSNQ 98

Query: 86  VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145
           V+I +ALFM+F++MSP LDR     +QP +   I    A+++   P   FM   TR KDL
Sbjct: 99  VLIGIALFMSFFIMSPVLDRINNEALQPYLAETIQAKEALEKAELPIHQFMLAQTRIKDL 158

Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
           + FM++A     N  + K   +  R+LIP+F+ SEL+ +F+IGF++ LPFL+ID++VA+I
Sbjct: 159 NTFMEIA-----NVQVDKPAEVPLRVLIPAFVTSELKTAFQIGFMLFLPFLVIDLVVASI 213

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +MAMGMMML P  +SLPFK++ FV++DGW+L++ +L  SF
Sbjct: 214 LMAMGMMMLSPMLVSLPFKLMLFVMVDGWNLILGSLANSF 253


>gi|332981449|ref|YP_004462890.1| flagellar biosynthetic protein FliP [Mahella australiensis 50-1
           BON]
 gi|332699127|gb|AEE96068.1| flagellar biosynthetic protein FliP [Mahella australiensis 50-1
           BON]
          Length = 257

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 93/194 (47%), Positives = 135/194 (69%), Gaps = 4/194 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +LIM+T F R I+V S +R+ +G+  +PPN VII LALF+TF+ M+P   +  +  +
Sbjct: 67  APAILIMLTSFTRIIVVLSFVRSALGLQQMPPNQVIIGLALFLTFFTMAPVATQINQTAL 126

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           QP MN QI +  AI     P   FM   TREKDL+LF++++              I   +
Sbjct: 127 QPYMNGQIEQQQAIDNAMVPLREFMFKETREKDLNLFVNLSGMDKPEQ----LSDISSTV 182

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           LIP+F+ISEL+ +F+IGFLI +PF++IDM+VAT +M+MGMMM+PP  ISLPFKV+ F+++
Sbjct: 183 LIPAFIISELKTAFQIGFLIYVPFIVIDMVVATTLMSMGMMMIPPVMISLPFKVLLFIMV 242

Query: 232 DGWSLLVENLVKSF 245
           DGW+L+V++L+ SF
Sbjct: 243 DGWNLVVQSLITSF 256


>gi|227112531|ref|ZP_03826187.1| flagellar biosynthesis protein FliP [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
 gi|227328348|ref|ZP_03832372.1| flagellar biosynthesis protein FliP [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 258

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 103/244 (42%), Positives = 152/244 (62%), Gaps = 4/244 (1%)

Query: 2   IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
           +RY      L     V+A+        +P      T  V+T  + T L+  P  L+M+T 
Sbjct: 17  LRYGLAIGLLFMAPSVWAQLPGIVTQPLPNGGQSWTLSVQTLVLLTSLTFIPAALLMMTS 76

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F R IIV S+LR  +G  + PPN V++ L LF+TF+VMSP L+R  +    P   +QI+ 
Sbjct: 77  FTRIIIVLSLLRNALGTPTAPPNQVLLGLTLFLTFFVMSPVLNRVYDEAYLPFSQDQISM 136

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
             AI+R AEP   FM   TRE DL+LF  +A       +I   + +  R+L+P+F+ SEL
Sbjct: 137 EVAIERGAEPVREFMLRQTRETDLALFTRLAEIP----EIQGPEAVPMRVLLPAFVTSEL 192

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
           + +F+IGF + +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L
Sbjct: 193 KTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSL 252

Query: 242 VKSF 245
            +SF
Sbjct: 253 AQSF 256


>gi|256830495|ref|YP_003159223.1| flagellar biosynthetic protein FliP [Desulfomicrobium baculatum DSM
           4028]
 gi|256579671|gb|ACU90807.1| flagellar biosynthetic protein FliP [Desulfomicrobium baculatum DSM
           4028]
          Length = 231

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 94/221 (42%), Positives = 141/221 (63%), Gaps = 4/221 (1%)

Query: 26  VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
           + + PA+       +    + T+LS+AP  ++ VT F R IIVF  LR  MG   +PPN 
Sbjct: 15  LSSGPAEPQKVAVALEIMALLTMLSMAPAFVLTVTSFTRIIIVFHFLRQAMGTQQMPPNQ 74

Query: 86  VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145
           V+ SLA+FMT  +M PT     +  +QP +N +I    A++R   P   F+  +TREKDL
Sbjct: 75  VLASLAIFMTVVIMMPTGRTINDTALQPYLNEEIGYGEALERAETPLRTFLFKHTREKDL 134

Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
           S+F  +             D +   IL+P+++ISEL+  F+IGFLI +PFLI+DM+VA+I
Sbjct: 135 SVFFSITGLERP----QNKDEVPTMILVPAYLISELKTGFQIGFLIYIPFLILDMVVASI 190

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +++MGMMMLPP  +SLPFK++ FV++DGW+L++ +LV SF+
Sbjct: 191 LLSMGMMMLPPVMVSLPFKILLFVMVDGWNLIIGSLVNSFV 231


>gi|54308125|ref|YP_129145.1| flagellar biosynthesis protein FliP [Photobacterium profundum SS9]
 gi|46912551|emb|CAG19343.1| Putative polar flagellar assembly protein, FliP [Photobacterium
           profundum SS9]
          Length = 284

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 93/221 (42%), Positives = 139/221 (62%), Gaps = 5/221 (2%)

Query: 25  DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
            V   P      +  ++  G+ T L   P ++I++T F R ++V SILR  MG+   P N
Sbjct: 67  SVTTNPDGSEDYSVTLQILGLMTALGFLPAIIILMTSFTRIVVVLSILRQAMGLQQTPSN 126

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
            VII +ALF+T +VMSP +D+     +QP +N +IT   A +    P   FM   TR KD
Sbjct: 127 QVIIGIALFLTLFVMSPVIDKVNADAVQPYINEEITAAQAFETAQVPLRQFMLKQTRVKD 186

Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
           L  F++M+ S+      T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+
Sbjct: 187 LESFVNMSGST-----ATAPEDVPITVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVAS 241

Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++MAMGMMML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 242 VLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 282


>gi|304316893|ref|YP_003852038.1| flagellar biosynthetic protein FliP [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778395|gb|ADL68954.1| flagellar biosynthetic protein FliP [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 249

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 98/239 (41%), Positives = 152/239 (63%), Gaps = 5/239 (2%)

Query: 7   FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
             L         + +S    +N P+  +  T  ++   + T+L++AP +LIM+T F R I
Sbjct: 15  LILLTKVTYAASSSASPLITINAPSGPNDITSSIQIVLLLTVLTLAPSILIMMTSFTRII 74

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           +V S LR  +G+  +PPN V+I L+LF+TF++M+P   +     IQP M  +IT   A  
Sbjct: 75  VVLSFLRNALGLQQMPPNQVLIGLSLFLTFFIMAPVGVQINNDSIQPYMQGKITPQVAYV 134

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           +  +P   FM   TR+ DL+LF+++A        +   + I  R++IPSF+ISEL+ +FE
Sbjct: 135 KARDPLKNFMLKQTRKNDLNLFINLAKIK-----VKSVNDIPLRVVIPSFIISELKTAFE 189

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGF+I +PFLIIDM+VA+++M+MGM MLPP  ISLPFK++ F+L+DGW++L ++LV  F
Sbjct: 190 IGFIIYIPFLIIDMVVASVLMSMGMFMLPPVLISLPFKLLLFILVDGWNILAKSLVIGF 248


>gi|256376457|ref|YP_003100117.1| flagellar biosynthesis protein FliP [Actinosynnema mirum DSM 43827]
 gi|255920760|gb|ACU36271.1| flagellar biosynthetic protein FliP [Actinosynnema mirum DSM 43827]
          Length = 293

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 133/222 (59%), Gaps = 4/222 (1%)

Query: 24  HDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPP 83
            + +NI       +  +      T+LS+AP LL++ T F +  +V SI R  +G+ +VPP
Sbjct: 75  GNSVNITVGGGKPSDSLTVLVALTVLSVAPALLLLCTSFTKVFVVLSITRNALGLTTVPP 134

Query: 84  NLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREK 143
           N V+  LALF++ ++M P      + GIQP +  + +   A +  ++P   FM   TR +
Sbjct: 135 NQVLAGLALFLSLFIMGPVASEVNDQGIQPYLKGEKSTEQAFEDGSKPLREFMVKQTRPE 194

Query: 144 DLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVA 203
           +++LF  ++            + +    LIP+F++SELR +  IGF++ +PFL+IDM+V+
Sbjct: 195 EIALFTKVSGQEKP----ANAESVPLTTLIPAFVLSELRAAMIIGFVLYIPFLVIDMVVS 250

Query: 204 TIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             +M++GMMMLPP +++LPFK++ FVL +GW L++  LV ++
Sbjct: 251 AALMSLGMMMLPPVTVALPFKLLLFVLANGWGLVITALVATY 292


>gi|256029950|ref|ZP_05443564.1| flagellar biosynthesis protein FliP [Brucella pinnipedialis
           M292/94/1]
 gi|265986969|ref|ZP_06099526.1| flagellar biosynthetic protein FliP [Brucella pinnipedialis
           M292/94/1]
 gi|264659166|gb|EEZ29427.1| flagellar biosynthetic protein FliP [Brucella pinnipedialis
           M292/94/1]
          Length = 246

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 130/240 (54%), Positives = 175/240 (72%), Gaps = 4/240 (1%)

Query: 7   FALFLVTPELVFAKSSLHDVMNIPAD-LSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65
             L L       A+ +L     +PA   + S  IV+ FG+ T+LSIAP LLIMVT F RF
Sbjct: 9   VILTLALTVSAQAQQALPLDKLLPAGSGAASGQIVQLFGLLTVLSIAPGLLIMVTSFTRF 68

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
            I FS+LR+G+G+ + P ++V+ISLALFMTFYVM+P  DR+   G+QPLM N+IT+  A 
Sbjct: 69  AIAFSLLRSGLGLQTAPASMVMISLALFMTFYVMAPAFDRAWNNGVQPLMPNEITQEAAF 128

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
             +++PF  FM    R+KDL LF D+A  S R +D      +++R+L+P+FMISELRR F
Sbjct: 129 GEISQPFREFMMAQVRDKDLRLFEDLADPSFRTSDDGI---VDFRVLVPAFMISELRRGF 185

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           EIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW++LV +L++SF
Sbjct: 186 EIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245


>gi|262276385|ref|ZP_06054194.1| flagellar biosynthesis protein FliP [Grimontia hollisae CIP 101886]
 gi|262220193|gb|EEY71509.1| flagellar biosynthesis protein FliP [Grimontia hollisae CIP 101886]
          Length = 277

 Score =  207 bits (527), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 90/216 (41%), Positives = 138/216 (63%), Gaps = 5/216 (2%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P      +  ++   + T L   P ++I++T F R ++V +ILR  MG+   P N VII 
Sbjct: 66  PDGTEDYSVTLQILALMTALGFLPAIVILMTSFTRIVVVMAILRQAMGLQQTPSNQVIIG 125

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           +A+F+T ++MSP +DR     +QP +N +IT   A  RV  P   FM   TR KDL  F+
Sbjct: 126 IAMFLTLFIMSPVIDRMNVAAVQPYLNEEITAREAFDRVQVPLREFMLQQTRVKDLETFV 185

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
           +M+        +T+ + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAM
Sbjct: 186 NMSG-----AQVTEAEQVPMTVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAM 240

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 241 GMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 276


>gi|315638458|ref|ZP_07893635.1| flagellar biosynthetic protein FliP [Campylobacter upsaliensis
           JV21]
 gi|315481449|gb|EFU72076.1| flagellar biosynthetic protein FliP [Campylobacter upsaliensis
           JV21]
          Length = 244

 Score =  207 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 107/245 (43%), Positives = 161/245 (65%), Gaps = 7/245 (2%)

Query: 5   CFFALFLVTPELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
             F L L    +  A++++  V   ++ P   +     +    + TIL++AP ++ ++T 
Sbjct: 3   SVFLLILFALSVFGAEATIPTVNLSLSAPDTPNQLVTTLNIIIVLTILALAPSIIFIMTS 62

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F R IIVFS LR  MG  S+PPN +++++AL +TF++M P   +S   G++P ++ QI  
Sbjct: 63  FLRLIIVFSFLRQAMGTQSMPPNTILVTMALILTFFIMEPVATKSYNEGVKPYLSEQIGY 122

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
             A  R  +PF  FM  NTREKDL+LF  + +  +  T     D +   +L+P+FMISEL
Sbjct: 123 EEAFVRGVKPFKDFMLKNTREKDLALFYRIRNLPNPKT----IDDVPLSVLVPAFMISEL 178

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
           + +FEIGFLI LPFL+IDM+V++++MAMGMMMLPP  ISLPFK++ FVL+DGW+LLV+ L
Sbjct: 179 KTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPVMISLPFKLLIFVLVDGWNLLVQRL 238

Query: 242 VKSFI 246
           V+SF+
Sbjct: 239 VESFV 243


>gi|239834436|ref|ZP_04682764.1| flagellar biosynthetic protein FliP [Ochrobactrum intermedium LMG
           3301]
 gi|239822499|gb|EEQ94068.1| flagellar biosynthetic protein FliP [Ochrobactrum intermedium LMG
           3301]
          Length = 246

 Score =  207 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 125/245 (51%), Positives = 173/245 (70%), Gaps = 3/245 (1%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           ++         +T      ++   D +      + S  IV+ FG+ T+LSIAP +LIMVT
Sbjct: 4   LLGLGVILTLALTVSAQAQQALTLDNLLPAGSGAASGQIVQLFGLLTVLSIAPGILIMVT 63

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F RF I FS+LR+G+G+ + P ++V+ISLALFMTFYVM+P  DR+   G+QPLM N+IT
Sbjct: 64  SFTRFAIAFSLLRSGLGLQTAPASMVMISLALFMTFYVMAPAFDRAWNNGVQPLMRNEIT 123

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
           +  A   +++PF  FM    R+KDL LF D+A  S R  D      +++R+L+P+FMISE
Sbjct: 124 QQAAFTEISQPFREFMLGQVRDKDLRLFEDLADPSFRTGDDGI---VDFRVLVPAFMISE 180

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           LRR FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW++LV +
Sbjct: 181 LRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNILVGS 240

Query: 241 LVKSF 245
           L++SF
Sbjct: 241 LIRSF 245


>gi|167037653|ref|YP_001665231.1| flagellar biosynthesis protein FliP [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116068|ref|YP_004186227.1| flagellar biosynthetic protein FliP [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166856487|gb|ABY94895.1| flagellar biosynthetic protein FliP [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929159|gb|ADV79844.1| flagellar biosynthetic protein FliP [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 221

 Score =  207 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 94/223 (42%), Positives = 146/223 (65%), Gaps = 5/223 (2%)

Query: 23  LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82
           L D+++     S     ++   + T+L++AP +LIM+T F R +IV S LR  +G+  +P
Sbjct: 3   LGDLVSSVTAPSNMATSLQIVLLLTVLTLAPSILIMMTSFTRIVIVLSFLRNALGLQQMP 62

Query: 83  PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142
           PN V+I LALF+T ++M+P         I+P    +IT+  A Q   +P   FM   TR+
Sbjct: 63  PNQVLIGLALFLTLFIMAPIGQDINNNAIKPYTEGKITQEEAYQNAIKPLKNFMLKQTRQ 122

Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202
            DL+LF+ +A        +   + +  R++IPSF+ISEL+ +FEIGF+I +PFLIID++V
Sbjct: 123 SDLNLFVSLAKIK-----VNNAEDLPMRVVIPSFIISELKTAFEIGFIIYIPFLIIDIVV 177

Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           A+++M+MGM MLPP  ISLPFKV+ F+L+DGW+L+V++L+  F
Sbjct: 178 ASVLMSMGMFMLPPVLISLPFKVLLFILVDGWNLVVKSLILGF 220


>gi|115523185|ref|YP_780096.1| flagellar biosynthesis protein FliP [Rhodopseudomonas palustris
           BisA53]
 gi|115517132|gb|ABJ05116.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris
           BisA53]
          Length = 244

 Score =  207 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 126/246 (51%), Positives = 168/246 (68%), Gaps = 2/246 (0%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           M R       ++ P    A+      +      S S  I++   + T+LS+AP LLIMVT
Sbjct: 1   MKRAPLVLFAVLLPTAALAQIPDLSTLIPQGQGSASGRIIQMVALLTVLSLAPGLLIMVT 60

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F RF++  S LRTG+G+ + P N+V+ISLALF+TFYVM+PT DR+   GIQPLM N+IT
Sbjct: 61  SFTRFVVALSFLRTGLGLQTTPANIVMISLALFLTFYVMAPTFDRAWREGIQPLMQNEIT 120

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
           E  A  RV EPF  FM    R+KDL  F ++A  S R       + ++ R++IP+FM+SE
Sbjct: 121 EKEAYARVTEPFREFMLAQVRDKDLQTFENLAAESLRAKP--DGERVDLRVIIPAFMVSE 178

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           LRR+FEIGFLI++PFL+IDMIVAT+ M+MGMMM+PPT  +LPFKV+FFVLIDGW+LL   
Sbjct: 179 LRRAFEIGFLIVMPFLVIDMIVATLTMSMGMMMMPPTVFALPFKVLFFVLIDGWNLLAVG 238

Query: 241 LVKSFI 246
           LV+SF+
Sbjct: 239 LVRSFL 244


>gi|188997535|ref|YP_001931786.1| flagellar biosynthetic protein FliP [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932602|gb|ACD67232.1| flagellar biosynthetic protein FliP [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 337

 Score =  207 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 110/242 (45%), Positives = 152/242 (62%), Gaps = 5/242 (2%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
           Y   ++ +V   L F+ S         A  +     ++   + TI+SIAP LLI VT F 
Sbjct: 100 YLIISIIIVLTLLNFSFSYADTFSETLAGFNRLDTTLKILLLITIISIAPALLISVTAFV 159

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
           R +IV S+LR  +G+ + PPN VI+ LALF+T +VM PT D+  E+ I P +  QI++  
Sbjct: 160 RIVIVLSLLRHALGIPTAPPNQVIVGLALFLTIFVMKPTFDKINEVSISPYLKKQISDIQ 219

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
           AI+   EP   FM  NTR++DL LF+D+A     N        I    LIP+FMISE++ 
Sbjct: 220 AIENAKEPLKEFMLKNTRKEDLKLFLDLA-----NEKPLSPKDISISTLIPAFMISEIKT 274

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
           +FEI F+I LPFL+ID IVA+I+M+MGMMM+PP  ISLPFK++ FVL DG+ LLV+ LV 
Sbjct: 275 AFEIVFIIYLPFLVIDFIVASILMSMGMMMIPPMFISLPFKLMLFVLADGFELLVKALVS 334

Query: 244 SF 245
           S+
Sbjct: 335 SY 336


>gi|123442774|ref|YP_001006751.1| flagellar biosynthesis protein FliP [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089735|emb|CAL12588.1| flagellar biosynthetic protein FliP [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 228

 Score =  207 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 94/230 (40%), Positives = 147/230 (63%), Gaps = 6/230 (2%)

Query: 18  FAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTG 75
            A + L  +++ P      +W   V+T    T LS  P  L+M+T F R IIV  +LR  
Sbjct: 1   MAMAQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLLRNA 60

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVF 135
           +G  S PPN V++ LALF+TF++MSP  D+  +    P   ++I+   A+ + ++P   F
Sbjct: 61  LGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAMDKGSQPLREF 120

Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195
           M   TRE DL+L+  +A+       +   + +  RIL+P+++ SEL+ +F+IGF + +PF
Sbjct: 121 MLRQTRESDLALYARLANLP----PLEGPEVVPLRILLPAYVTSELKTAFQIGFTVFIPF 176

Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LIID++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 177 LIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 226


>gi|294853182|ref|ZP_06793854.1| flagellar biosynthetic protein FliP [Brucella sp. NVSL 07-0026]
 gi|294818837|gb|EFG35837.1| flagellar biosynthetic protein FliP [Brucella sp. NVSL 07-0026]
          Length = 246

 Score =  207 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 129/240 (53%), Positives = 174/240 (72%), Gaps = 4/240 (1%)

Query: 7   FALFLVTPELVFAKSSLHDVMNIPAD-LSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65
             L L       A+ +L     +PA   + S  IV+ FG+ T+LSIAP LLIMVT F RF
Sbjct: 9   VILTLALTVSAQAQQALPLDKLLPAGSGAASGQIVQLFGLLTVLSIAPGLLIMVTSFTRF 68

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
            I FS+LR+G+G+ + P ++V+ISLALFMTFYVM+P  DR+   G+QPLM N+IT+  A 
Sbjct: 69  AIAFSLLRSGLGLQTAPASMVMISLALFMTFYVMAPAFDRAWNNGVQPLMRNEITQEAAF 128

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
             +++PF  FM    R+KDL LF D+   S R +D      +++R+L+P+FMISELRR F
Sbjct: 129 GEISQPFREFMMAQVRDKDLRLFEDLVDPSFRTSDDGI---VDFRVLVPAFMISELRRGF 185

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           EIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW++LV +L++SF
Sbjct: 186 EIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245


>gi|330861094|emb|CBX71361.1| flagellar biosynthetic protein fliP [Yersinia enterocolitica
           W22703]
          Length = 237

 Score =  207 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 95/239 (39%), Positives = 149/239 (62%), Gaps = 6/239 (2%)

Query: 9   LFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFI 66
           + L       A + L  +++ P      +W   V+T    T LS  P  L+M+T F R I
Sbjct: 1   MLLALLCSPAAMAQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRII 60

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IV  +LR  +G  S PPN V++ LALF+TF++MSP  D+  +    P   ++I+   A+ 
Sbjct: 61  IVLGLLRNALGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAMD 120

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           + ++P   FM   TRE DL+L+  +A+       +   + +  RIL+P+++ SEL+ +F+
Sbjct: 121 KGSQPLREFMLRQTRESDLALYARLANLP----PLEGPEVVPLRILLPAYVTSELKTAFQ 176

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGF + +PFLIID++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 177 IGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 235


>gi|229528865|ref|ZP_04418255.1| flagellar biosynthesis protein FliP [Vibrio cholerae 12129(1)]
 gi|229332639|gb|EEN98125.1| flagellar biosynthesis protein FliP [Vibrio cholerae 12129(1)]
 gi|327484651|gb|AEA79058.1| Flagellar biosynthesis protein FliP [Vibrio cholerae LMA3894-4]
          Length = 299

 Score =  207 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 89/206 (43%), Positives = 135/206 (65%), Gaps = 5/206 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   + T+L   P ++I++T F R ++V SILR  MG+   P N VII +ALF+TF++M
Sbjct: 97  LQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFIM 156

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +P  ++  E  +QP +N QIT   A     EP   FM   TR  DL  F++M+       
Sbjct: 157 APVFNQINEQAVQPYLNEQITARQAFDLAQEPLKAFMLKQTRVNDLETFVEMSG-----A 211

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGMMML P  +
Sbjct: 212 QVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGMMMLSPMIV 271

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 272 SLPFKLMLFVLVDGWNLILSTLAGSF 297


>gi|7387672|sp|O85133|FLIP_RHOSH RecName: Full=Flagellar biosynthetic protein fliP
 gi|3435109|gb|AAC32322.1| flagellar protein FliP [Rhodobacter sphaeroides]
          Length = 301

 Score =  207 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 90/219 (41%), Positives = 137/219 (62%), Gaps = 4/219 (1%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
           +      +     ++   + T L++ P L++ ++ F R IIV SILR  +G    PPN V
Sbjct: 84  VTEGTGGTSYLLSLQILALMTALTVLPSLVLGMSAFTRIIIVLSILRQALGTQQTPPNQV 143

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           +I+LALF+TF+VM PTL    E  + P ++ QI    AI+R       F+  NTR+ DL 
Sbjct: 144 LIALALFLTFFVMQPTLGALYEQSLSPFLDGQIEAQPAIERGGAIMKDFLIANTRQNDLL 203

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
           +F D+A +        +   + +  L+P+FM SEL+ +F+IGFL+ LPFL+IDM++A+I+
Sbjct: 204 MFSDLAGAG----PYAEPTEVPFSTLLPAFMTSELKTAFQIGFLLFLPFLVIDMVIASIL 259

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MA+GMMML P  +SLPFK++ FVL+DGW+L V +L  S+
Sbjct: 260 MALGMMMLSPMLVSLPFKLLLFVLVDGWALTVGSLAASY 298


>gi|148546750|ref|YP_001266852.1| flagellar biosynthesis protein FliP [Pseudomonas putida F1]
 gi|148510808|gb|ABQ77668.1| flagellar biosynthetic protein FliP [Pseudomonas putida F1]
          Length = 251

 Score =  207 bits (526), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 95/220 (43%), Positives = 140/220 (63%), Gaps = 4/220 (1%)

Query: 26  VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
           + N P      +  ++   I T LS  P  +I++T F R IIVFSILR  +G+   P N 
Sbjct: 33  LSNTPDGQQEYSVSLQILLIMTALSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQ 92

Query: 86  VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145
           ++  +ALF+T ++M+P  +R  +  +QP +  Q+T   AI +   P   FM   TR+ DL
Sbjct: 93  LLNGMALFLTMFIMAPVFERVNQDALQPYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDL 152

Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
            LFM ++    + TDI   D +   IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA++
Sbjct: 153 DLFMRLS----KRTDIAGPDQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASV 208

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +MAMGMMML P  ISLPFK++ FVL+DGW+L++  L  SF
Sbjct: 209 LMAMGMMMLSPLIISLPFKIMLFVLVDGWALIMGTLASSF 248


>gi|57167820|ref|ZP_00366960.1| flagellar biosynthesis protein Cj0820c [Campylobacter coli RM2228]
 gi|305432155|ref|ZP_07401321.1| flagellar biosynthetic protein FliP [Campylobacter coli JV20]
 gi|57020942|gb|EAL57606.1| flagellar biosynthesis protein Cj0820c [Campylobacter coli RM2228]
 gi|304444820|gb|EFM37467.1| flagellar biosynthetic protein FliP [Campylobacter coli JV20]
          Length = 247

 Score =  207 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 103/225 (45%), Positives = 153/225 (68%), Gaps = 4/225 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           +++  ++ P   +     +    + TIL++AP ++ ++T F R I+VFS LR  MG  S+
Sbjct: 26  TVNLSLSAPDTPNQLVTTLNIVIVLTILALAPSIIFVMTSFLRLIVVFSFLRQAMGTQSM 85

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PPN ++++LAL +TF++M P   +S   GI+P +  QI    A  R  +PF  FM  NTR
Sbjct: 86  PPNTILVTLALILTFFIMEPVATKSYNEGIKPYLAEQIGYEEAFARGVKPFKDFMLKNTR 145

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           EKDL+LF  + +  +  T     D +   +L+P+FMISEL+ +FEIGFLI LPFL+IDM+
Sbjct: 146 EKDLALFYRIRNLPNPKT----IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMV 201

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           V++++MAMGMMMLPP  ISLPFK++ FVL+DGW+LLV+ LV+SF+
Sbjct: 202 VSSVLMAMGMMMLPPVMISLPFKLLIFVLVDGWNLLVQRLVESFV 246


>gi|27381978|ref|NP_773507.1| flagellar biosynthesis protein FliP [Bradyrhizobium japonicum USDA
           110]
 gi|27355148|dbj|BAC52132.1| flagellar biosynthetic protein [Bradyrhizobium japonicum USDA 110]
          Length = 246

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 127/232 (54%), Positives = 170/232 (73%), Gaps = 2/232 (0%)

Query: 14  PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73
           PE+ FA+    + +  P + S S  I++   + T+LS+AP LLIMVT F RF +  S LR
Sbjct: 16  PEMAFAQIPDLNSLLPPGNGSTSGRIIQLMALITVLSVAPGLLIMVTSFTRFAVALSFLR 75

Query: 74  TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133
           +G+G+ + P NLV++SLALFMTFYVM+PT DR+ E G+QPLM N+I+E  A  ++ +PF 
Sbjct: 76  SGLGLQTTPANLVLVSLALFMTFYVMAPTFDRAWETGVQPLMKNEISEEEAYLKITDPFR 135

Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
            FM  + R+KDL  F  +A  S R     K   I+ R++IP+FMISELRRSFEIGFLI+L
Sbjct: 136 EFMLAHVRDKDLQTFEALAAESFRKKFDDKR--IDLRVIIPAFMISELRRSFEIGFLIML 193

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           PFL+IDMIVAT+ M+MGMMM+PPT ++LPFK++FFVLIDGW+LL   LV+SF
Sbjct: 194 PFLVIDMIVATLTMSMGMMMMPPTILALPFKMLFFVLIDGWNLLASGLVRSF 245


>gi|254491717|ref|ZP_05104896.1| flagellar biosynthetic protein FliP [Methylophaga thiooxidans
           DMS010]
 gi|224463195|gb|EEF79465.1| flagellar biosynthetic protein FliP [Methylophaga thiooxydans
           DMS010]
          Length = 244

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 101/246 (41%), Positives = 153/246 (62%), Gaps = 6/246 (2%)

Query: 2   IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMV 59
           +R     L L  P L  A+  +  V     +    ++ V  +   + T+L++ P  L+M+
Sbjct: 1   MRVLLACLLLFAPLLAVAEPGIPAVTVTGNEDGGQSYTVTLQILALMTVLTLLPAALMMM 60

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R IIV +ILR  MG+ S P N ++I LALF+T ++M P  ++S +  + P M+ +I
Sbjct: 61  TSFTRIIIVLAILRQAMGVQSTPSNQILIGLALFLTIFIMHPVFNQSYQNAVVPYMDGEI 120

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
             TTA ++ ++PF  FM   TRE D+ LF  +        ++   + I + +L+PSF+ S
Sbjct: 121 EFTTAFEQASQPFKEFMIAQTRETDIELFASIGG----YEELQSAEDIPFSLLLPSFVTS 176

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+ +F+IGFLI +PFLIID++VA+++MAMGMMML P  ISLPFK++ FVLIDGW+LL+ 
Sbjct: 177 ELKTAFQIGFLIFIPFLIIDLVVASVLMAMGMMMLSPMLISLPFKLMLFVLIDGWALLMG 236

Query: 240 NLVKSF 245
            L  SF
Sbjct: 237 TLASSF 242


>gi|332161332|ref|YP_004297909.1| flagellar biosynthesis protein FliP [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318605253|emb|CBY26751.1| flagellar biosynthesis protein FliP [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325665562|gb|ADZ42206.1| flagellar biosynthesis protein FliP [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 250

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 93/227 (40%), Positives = 146/227 (64%), Gaps = 6/227 (2%)

Query: 21  SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           + L  +++ P      +W   V+T    T LS  P  L+M+T F R IIV  +LR  +G 
Sbjct: 26  AQLPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFTRIIIVLGLLRNALGT 85

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
            S PPN V++ LALF+TF++MSP  D+  +    P   ++I+   A+ + ++P   FM  
Sbjct: 86  PSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAMDKGSQPLREFMLR 145

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
            TRE DL+L+  +A+       +   + +  RIL+P+++ SEL+ +F+IGF + +PFLII
Sbjct: 146 QTRESDLALYARLANLP----PLEGPEVVPLRILLPAYVTSELKTAFQIGFTVFIPFLII 201

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           D++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 202 DLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 248


>gi|262166224|ref|ZP_06033961.1| flagellar biosynthesis protein FliP [Vibrio mimicus VM223]
 gi|262025940|gb|EEY44608.1| flagellar biosynthesis protein FliP [Vibrio mimicus VM223]
          Length = 299

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 91/219 (41%), Positives = 139/219 (63%), Gaps = 5/219 (2%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
              P      +  ++   + T+L   P ++I++T F R ++V SILR  MG+   P N V
Sbjct: 84  TTNPDGSEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 143

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           II +ALF+TF++M+P  ++  E  +QP +N QI+   A     EP   FM   TR KDL 
Sbjct: 144 IIGIALFLTFFIMAPVFNQINEQAVQPYLNEQISARQAFDLAQEPMKAFMLKQTRVKDLE 203

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
            F++M+ S      +T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++
Sbjct: 204 TFVEMSGS-----QVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 258

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MAMGMMML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 259 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297


>gi|329901241|ref|ZP_08272766.1| Flagellar biosynthesis protein fliP [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549173|gb|EGF33765.1| Flagellar biosynthesis protein fliP [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 251

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 95/246 (38%), Positives = 151/246 (61%), Gaps = 6/246 (2%)

Query: 2   IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIA--PILLIMV 59
           +R+   AL ++       ++ L  + + P       + +    +  + +++  P  L+M+
Sbjct: 9   LRWSAVALVVLPLAAYAQQAGLPALTSTPTAGGGQNYTLSLQTLLLLTALSFLPAALLMM 68

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R IIV S+LR  +G  S PPN V++ LALF+T +VM P  D+       PL  N+I
Sbjct: 69  TSFTRIIIVLSLLRQALGTQSAPPNQVMVGLALFLTLFVMGPVFDKIYADAYLPLQENKI 128

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
             T A++R A P   FM   TR+ DL+L++ M++S      +   D +  RIL+P+F+ S
Sbjct: 129 NMTQAMERGAAPLKAFMMKQTRQADLALYVKMSNSP----ALQGPDDVPLRILVPAFITS 184

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+ +F+I F I +PFLIIDM+VA+++M+MGMMM+ P+ +SLPFK++ FVL+DGW LL+ 
Sbjct: 185 ELKTAFQISFAIFIPFLIIDMVVASVLMSMGMMMVSPSIVSLPFKLMLFVLVDGWQLLIG 244

Query: 240 NLVKSF 245
           +L +SF
Sbjct: 245 SLAQSF 250


>gi|127512307|ref|YP_001093504.1| flagellar biosynthesis protein FliP [Shewanella loihica PV-4]
 gi|126637602|gb|ABO23245.1| flagellar biosynthetic protein FliP [Shewanella loihica PV-4]
          Length = 255

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 89/238 (37%), Positives = 145/238 (60%), Gaps = 7/238 (2%)

Query: 11  LVTPELVFAKSSLHDVMNIPADLSISTW---IVRTFGIFTILSIAPILLIMVTCFPRFII 67
           ++ P+L  A+  +   + +      ST     ++   + T LS  P ++IM+T F R I+
Sbjct: 20  VMAPQLALAQDGILPAVTVTTGADGSTQYSVTMQILLLMTALSFLPAMVIMLTSFTRIIV 79

Query: 68  VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
           V SILR  +G+   P N V+I ++LFMTF++M+P  D+  +  ++P ++  +T   A  +
Sbjct: 80  VLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDKIYDQAVKPYIDETMTIEQAYDK 139

Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
             EP   FM   TR  DL  F+ ++       +I   +     +LIP+F+ SEL+ +F+I
Sbjct: 140 GKEPLRAFMLAQTRLTDLETFVQISG----YQNIQSPEDAPMSVLIPAFITSELKTAFQI 195

Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GF++ +PFL++D++VA+I+MAMGMMML P  +SLPFK++ FVL+DGWSL++  L  SF
Sbjct: 196 GFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVMGTLANSF 253


>gi|328474450|gb|EGF45255.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus 10329]
          Length = 289

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 92/219 (42%), Positives = 137/219 (62%), Gaps = 5/219 (2%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
              P      +  ++   + T+L   P ++I++T F R ++V SILR  MG+   P N V
Sbjct: 74  TTNPDGSEDYSVTLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 133

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           II +ALF+TF+VMSP L+   +  IQP +N Q+T   A      P   FM   TR KDL 
Sbjct: 134 IIGIALFLTFFVMSPVLNEINDTAIQPYLNEQVTAREAFDAAQVPMKAFMLKQTRIKDLE 193

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
            F++M+        +T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++
Sbjct: 194 TFVNMSG-----EQVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 248

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MAMGMMML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 249 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287


>gi|258621114|ref|ZP_05716148.1| Flagellar biosynthetic protein fliP [Vibrio mimicus VM573]
 gi|258626187|ref|ZP_05721035.1| Flagellar biosynthetic protein fliP [Vibrio mimicus VM603]
 gi|262170890|ref|ZP_06038568.1| flagellar biosynthesis protein FliP [Vibrio mimicus MB-451]
 gi|258581542|gb|EEW06443.1| Flagellar biosynthetic protein fliP [Vibrio mimicus VM603]
 gi|258586502|gb|EEW11217.1| Flagellar biosynthetic protein fliP [Vibrio mimicus VM573]
 gi|261891966|gb|EEY37952.1| flagellar biosynthesis protein FliP [Vibrio mimicus MB-451]
          Length = 299

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 91/219 (41%), Positives = 139/219 (63%), Gaps = 5/219 (2%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
              P      +  ++   + T+L   P ++I++T F R ++V SILR  MG+   P N V
Sbjct: 84  TTNPDGSEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 143

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           II +ALF+TF++M+P  ++  E  +QP +N QI+   A     EP   FM   TR KDL 
Sbjct: 144 IIGIALFLTFFIMAPVFNQINEQAVQPYLNEQISARQAFDLAQEPMKAFMLKQTRIKDLE 203

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
            F++M+ S      +T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++
Sbjct: 204 TFVEMSGS-----QVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 258

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MAMGMMML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 259 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297


>gi|149188095|ref|ZP_01866390.1| flagellar biosynthesis protein P [Vibrio shilonii AK1]
 gi|148838083|gb|EDL55025.1| flagellar biosynthesis protein P [Vibrio shilonii AK1]
          Length = 287

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 94/218 (43%), Positives = 142/218 (65%), Gaps = 5/218 (2%)

Query: 28  NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87
             P      +  ++   + T+L   P ++I++T F R ++V SILR  MG+   P N VI
Sbjct: 73  TNPDGSEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVI 132

Query: 88  ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147
           I +A+F+TF++MSP L++  +  IQP +N QIT   A Q+   P   FM   TR KDL  
Sbjct: 133 IGIAIFLTFFIMSPVLNQVNDQAIQPYLNEQITAKEAFQQAQGPMKSFMLKQTRVKDLET 192

Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
           F++M+ S+ +N      + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+I+M
Sbjct: 193 FVEMSGSTAQN-----PEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASILM 247

Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           AMGMMML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 248 AMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 285


>gi|77463634|ref|YP_353138.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides 2.4.1]
 gi|77388052|gb|ABA79237.1| Flagellar transport protein FliP [Rhodobacter sphaeroides 2.4.1]
          Length = 301

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 89/220 (40%), Positives = 138/220 (62%), Gaps = 4/220 (1%)

Query: 26  VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
            +      +  +  ++   + T L++ P L++ ++ F R IIV SILR  +G    PPN 
Sbjct: 83  TVTEGTGGTSYSLSLQILALMTALTVLPSLVLGMSAFTRIIIVLSILRQALGTQQTPPNQ 142

Query: 86  VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145
           V+I+LALF+TF+VM PTL    E  + P ++ QI    AI+R       F+  NTR+ DL
Sbjct: 143 VLIALALFLTFFVMQPTLGALYEQSLSPFLDGQIEAQPAIERGGAIMKDFLIANTRQNDL 202

Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
            +F D+A +        +   + +  L+P+FM SEL+ +F+IGFL+ LPFL+IDM++A+I
Sbjct: 203 LMFSDLAGAG----PYAEPTEVPFSTLLPAFMTSELKTAFQIGFLLFLPFLVIDMVIASI 258

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +MA+GMMML P  +SLPFK++ FVL+DGW+L V +L  ++
Sbjct: 259 LMALGMMMLSPMLVSLPFKLLLFVLVDGWALTVGSLAATY 298


>gi|85058021|ref|YP_453723.1| flagellar biosynthesis protein FliP [Sodalis glossinidius str.
           'morsitans']
 gi|84778541|dbj|BAE73318.1| flagellar protein FliP [Sodalis glossinidius str. 'morsitans']
          Length = 256

 Score =  206 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 95/228 (41%), Positives = 145/228 (63%), Gaps = 4/228 (1%)

Query: 18  FAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMG 77
            A+  L  +  +P      +  V+T  + T L+  P  L++++ F R IIV SILR  +G
Sbjct: 31  AAQQGLIQMHPLPDGGQRWSLPVQTLVLLTSLTFLPAALLLMSGFTRIIIVLSILRNALG 90

Query: 78  MGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMR 137
             S PPN +++ LAL +TF+VMSP LD        P   +QI   TAI+R A+P   FM 
Sbjct: 91  TPSAPPNQILLGLALCLTFFVMSPVLDSIYRDAYLPFSQDQIDMDTAIERAAQPLRQFML 150

Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197
             TRE DLSL+  +     +       + +  +IL+P+F+ SEL+ +F+IGF + +PFLI
Sbjct: 151 TQTRETDLSLYARL----GKQAAFAGPEQVPMQILLPAFVTSELKTAFQIGFTLFIPFLI 206

Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ID+++A+++MA+GMMMLPPT++SLPFK++ FV++DGW LL+ +L +SF
Sbjct: 207 IDLVIASVLMALGMMMLPPTTVSLPFKLMLFVMVDGWQLLLGSLAQSF 254


>gi|311068157|ref|YP_003973080.1| flagellar biosynthesis protein FliP [Bacillus atrophaeus 1942]
 gi|310868674|gb|ADP32149.1| flagellar biosynthesis protein FliP [Bacillus atrophaeus 1942]
          Length = 221

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 98/215 (45%), Positives = 147/215 (68%), Gaps = 4/215 (1%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
           +D    +  V+   + T+ S+AP +LI++TCF R +IV S +RT +   S+PPN V+I L
Sbjct: 11  SDPDNVSSTVKLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATQSMPPNQVLIGL 70

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           ALF+TF++M+PT     +  + PLM+N+I+   A  +  EP   FM  +TR+KDL+LFM+
Sbjct: 71  ALFLTFFIMAPTFSDINKEALTPLMDNKISLDEAYTKAEEPIKEFMSKHTRQKDLALFMN 130

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
            A              I    ++P+F ISEL+ +F+IGF+I +PFLIIDM+VA+++M+MG
Sbjct: 131 YAKMDKPE----SLKDIPLTTMVPAFAISELKTAFQIGFMIFIPFLIIDMVVASVLMSMG 186

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMMLPP  ISLPFK++ FVL+DGW L+V++L++SF
Sbjct: 187 MMMLPPVMISLPFKILLFVLVDGWYLIVKSLLQSF 221


>gi|218133679|ref|ZP_03462483.1| hypothetical protein BACPEC_01548 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991054|gb|EEC57060.1| hypothetical protein BACPEC_01548 [Bacteroides pectinophilus ATCC
           43243]
          Length = 278

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 93/215 (43%), Positives = 146/215 (67%), Gaps = 2/215 (0%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
            D S    +++   + TI+S+AP +L+++T F R +IV    R  +G+ ++PPN V+I L
Sbjct: 65  GDGSDMASVLQMLLVLTIISLAPSILMLLTSFTRIVIVLHFTRAALGVQTIPPNQVLIGL 124

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           ++F+TF+VMSPT  +  +  I+PL NN+IT   A     +P   FM      KDL  F++
Sbjct: 125 SIFLTFFVMSPTFTQVYDSAIKPLSNNEITTEQAFDAGIKPMRAFMLKQVSTKDLDTFLN 184

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           +A +      I   D I   +LIP+F+ISELR +F IGFLI +PF++IDM+V++++M+MG
Sbjct: 185 IAGTE--AGSIENEDDIPLNVLIPAFIISELRIAFIIGFLIYIPFIVIDMVVSSVLMSMG 242

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMMLPPT+IS+PFK++ FV+ DGW+L++ NL+++F
Sbjct: 243 MMMLPPTTISMPFKILLFVMADGWNLVIGNLMQTF 277


>gi|90411033|ref|ZP_01219047.1| flagellar biosynthesis protein [Photobacterium profundum 3TCK]
 gi|90328246|gb|EAS44557.1| flagellar biosynthesis protein [Photobacterium profundum 3TCK]
          Length = 284

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 95/221 (42%), Positives = 140/221 (63%), Gaps = 5/221 (2%)

Query: 25  DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
            V   P      +  ++  G+ T L   P ++I++T F R ++V SILR  MG+   P N
Sbjct: 67  SVTTNPDGGEDYSVTLQILGLMTALGFLPAIVILMTSFTRIVVVLSILRQAMGLQQTPSN 126

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
            VII +ALFMTF+VMSP +D+     +QP +N +IT   A +    P   FM   TR KD
Sbjct: 127 QVIIGIALFMTFFVMSPVIDKVNIDAVQPYINEEITAAQAFETAQVPLRQFMLKQTRVKD 186

Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
           L  F++M+ S+      T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+
Sbjct: 187 LESFVNMSGST-----ATAPEDVPITVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVAS 241

Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++MAMGMMML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 242 VLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILTTLAGSF 282


>gi|262404469|ref|ZP_06081024.1| flagellar biosynthesis protein FliP [Vibrio sp. RC586]
 gi|262349501|gb|EEY98639.1| flagellar biosynthesis protein FliP [Vibrio sp. RC586]
          Length = 299

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 90/219 (41%), Positives = 138/219 (63%), Gaps = 5/219 (2%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
              P      +  ++   + T+L   P ++I++T F R ++V SILR  MG+   P N V
Sbjct: 84  TTNPDGSEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 143

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           II +ALF+TF++M+P  ++  E  +QP +N QI+   A     EP   FM   TR KDL 
Sbjct: 144 IIGIALFLTFFIMAPVFNQINEQAVQPYLNEQISARQAFDLAQEPMKAFMLKQTRVKDLE 203

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
            F++M+        +T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++
Sbjct: 204 TFVEMSG-----AQVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 258

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MAMGMMML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 259 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297


>gi|24374730|ref|NP_718773.1| flagellar biosynthesis protein FliP [Shewanella oneidensis MR-1]
 gi|24349390|gb|AAN56217.1|AE015759_9 flagellar biosynthetic protein FliP [Shewanella oneidensis MR-1]
          Length = 247

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 90/247 (36%), Positives = 145/247 (58%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIM 58
           ++ +   +  L       A   L  V    A    + + V  +   + T LS  P ++IM
Sbjct: 4   ILTFIGLSTLLFVTSAGAADGVLPAVTVKTAADGSTEYSVTMQILLLMTSLSFIPAMVIM 63

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R I+V SILR  +G+   P N V+I ++LFMTF++M+P  D+  + G++P ++ Q
Sbjct: 64  LTSFTRIIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDKIYDQGVKPYIDEQ 123

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           +T   A  +  EP   FM    R  DL  F+D++       +I   +     +L+P+F+ 
Sbjct: 124 LTLQQAFDKGKEPLRAFMLGQVRTTDLKTFIDISG----YQNINSPEEAPMSVLVPAFIT 179

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P  +SLPFK++ FVL+DGW L++
Sbjct: 180 SELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWGLVM 239

Query: 239 ENLVKSF 245
             L  SF
Sbjct: 240 GTLANSF 246


>gi|17989425|ref|NP_542058.1| flagellar biosynthesis protein FliP [Brucella melitensis bv. 1 str.
           16M]
 gi|256043079|ref|ZP_05446023.1| flagellar biosynthesis protein FliP [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260564309|ref|ZP_05834794.1| flagellar transporter FliP [Brucella melitensis bv. 1 str. 16M]
 gi|265989517|ref|ZP_06102074.1| flagellar biosynthetic protein FliP [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|17985302|gb|AAL54322.1| flagellar biosynthetic protein flip [Brucella melitensis bv. 1 str.
           16M]
 gi|260151952|gb|EEW87045.1| flagellar transporter FliP [Brucella melitensis bv. 1 str. 16M]
 gi|263000186|gb|EEZ12876.1| flagellar biosynthetic protein FliP [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 246

 Score =  206 bits (524), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 129/240 (53%), Positives = 174/240 (72%), Gaps = 4/240 (1%)

Query: 7   FALFLVTPELVFAKSSLHDVMNIPAD-LSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65
             L L       A+ +L     +PA   + S  IV+ FG+ T+LSIAP LLIMVT F RF
Sbjct: 9   VILTLALTVSAQAQQALPLDKLLPAGSGAASGQIVQLFGLLTVLSIAPGLLIMVTSFTRF 68

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
            I FS+LR+G+G+ + P ++V+ISLALFMTFYVM+P  DR+   G+QPLM N+I +  A 
Sbjct: 69  AIAFSLLRSGLGLQTAPASMVMISLALFMTFYVMAPAFDRAWNNGVQPLMRNEIMQEAAF 128

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
             +++PF  FM    R+KDL LF D+A  S R +D      +++R+L+P+FMISELRR F
Sbjct: 129 GEISQPFREFMMAQVRDKDLRLFEDLADPSFRTSDDGI---VDFRVLVPAFMISELRRGF 185

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           EIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT ISLPFK++FFVLIDGW++LV +L++SF
Sbjct: 186 EIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVISLPFKILFFVLIDGWNILVGSLIRSF 245


>gi|207092164|ref|ZP_03239951.1| flagellar biosynthesis protein FliP [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 266

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 106/244 (43%), Positives = 162/244 (66%), Gaps = 6/244 (2%)

Query: 4   YCFFALFLVTPELVF--AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
           +      L+ P +    A  S++  +N P D       +    + T+L +AP L++++T 
Sbjct: 24  FLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTS 83

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F R I+VFS LRT +G    PP  +++SL+L +TF++M P+L ++ + GI+P M+ +I+ 
Sbjct: 84  FTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISY 143

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
           T A ++ A PF  FM  NTREKDL+LF  + +  +  T     D +   +LIP+FMISEL
Sbjct: 144 TEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISEL 199

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
           + +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LL ENL
Sbjct: 200 KTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENL 259

Query: 242 VKSF 245
           V SF
Sbjct: 260 VASF 263


>gi|238782830|ref|ZP_04626859.1| Flagellar biosynthetic protein fliP [Yersinia bercovieri ATCC
           43970]
 gi|238716253|gb|EEQ08236.1| Flagellar biosynthetic protein fliP [Yersinia bercovieri ATCC
           43970]
          Length = 257

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 98/215 (45%), Positives = 147/215 (68%), Gaps = 4/215 (1%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
           AD    +  V+T  + T L+  P +L+M+T F R IIV  +LR  +G  S PPN V+++L
Sbjct: 45  ADGENWSLPVQTLVLLTSLTFLPAILLMMTGFTRIIIVLGLLRNALGTPSTPPNQVLLAL 104

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           ALF+TFYVMSP  ++  +   QPL  ++I+  TA++R  +P  VFM   TRE DL+L+  
Sbjct: 105 ALFLTFYVMSPVFNQIYKEAWQPLSEDKISMETALERGVQPLRVFMLEQTRESDLALYAR 164

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           MA    +  +    D +  R+L+P+F+ SEL+  F+IGF + +PFLIID++VA+++MA+G
Sbjct: 165 MA----KEENFQSKDDVPLRVLLPAFVTSELKTGFQIGFTVFIPFLIIDLVVASVLMALG 220

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 221 MMMVPPATISLPFKLMLFVLVDGWQLLMGSLAQSF 255


>gi|296534353|ref|ZP_06896817.1| flagellar biosynthetic protein FliP [Roseomonas cervicalis ATCC
           49957]
 gi|296265319|gb|EFH11480.1| flagellar biosynthetic protein FliP [Roseomonas cervicalis ATCC
           49957]
          Length = 258

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 105/224 (46%), Positives = 154/224 (68%), Gaps = 4/224 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           SL+  +  P +   +T +V+   +  +LS+AP LL+MVT F R  IV S+LR+ +G   V
Sbjct: 35  SLNLDLGQPGEAGATTRLVQLTALIGLLSLAPSLLVMVTAFARISIVLSLLRSAIGAPGV 94

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PPN V+I LALF+TF+VM P L+ S   G+QP+   Q+ E   +Q  AEPF  FM  + R
Sbjct: 95  PPNPVLIGLALFLTFFVMQPVLEASWTQGLQPMAAGQLGEIEGLQAAAEPFRGFMLAHAR 154

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           + D++LF+D+A+               +R+L+P+F++ ELRR+FEIGFLI LPFL+ID++
Sbjct: 155 DSDIALFLDLANLPAVEEPART----PWRVLVPAFLVGELRRAFEIGFLIFLPFLVIDIV 210

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           VA+++M +GMMMLPP ++SLPFK+IFFVL+DGW L+  +LV+ F
Sbjct: 211 VASVLMGLGMMMLPPNTVSLPFKLIFFVLVDGWRLVSGSLVQGF 254


>gi|161484783|ref|NP_669792.2| flagellar biosynthesis protein FliP [Yersinia pestis KIM 10]
 gi|161511402|ref|NP_992929.2| flagellar biosynthesis protein FliP [Yersinia pestis biovar
           Microtus str. 91001]
 gi|161760581|ref|YP_070220.2| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis IP
           32953]
 gi|162100177|ref|YP_651108.2| flagellar biosynthesis protein FliP [Yersinia pestis Antiqua]
 gi|162139435|ref|YP_648231.2| flagellar biosynthesis protein FliP [Yersinia pestis Nepal516]
 gi|167401077|ref|ZP_02306580.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|115347552|emb|CAL20461.1| flagellar biosynthetic protein FliP [Yersinia pestis CO92]
 gi|167049466|gb|EDR60874.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua
           str. UG05-0454]
          Length = 246

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 98/242 (40%), Positives = 150/242 (61%), Gaps = 8/242 (3%)

Query: 6   FFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFP 63
              L L     V A+  L  +++ P      +W   V+T    T LS  P  L+M+T F 
Sbjct: 9   LGLLTLFCSPSVLAQ--LPGIISQPLANGGQSWSLPVQTLVFITTLSFLPAALLMMTSFT 66

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
           R IIV  +LR  MG  S PPN V++ LALF+TF++MSP  D+  +    P   ++I+   
Sbjct: 67  RIIIVLGLLRNAMGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQEAYLPFSQDKISMDV 126

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
           A+ + ++P   FM   TRE DL+L+  +A+       +   + +  RIL+P+++ SEL+ 
Sbjct: 127 ALDKGSQPLREFMLRQTRESDLALYARLANLP----PLEGPEMVPMRILLPAYVTSELKT 182

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
           +F+IGF + +PFLIID++VA+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +
Sbjct: 183 AFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQ 242

Query: 244 SF 245
           SF
Sbjct: 243 SF 244


>gi|222823982|ref|YP_002575556.1| flagellar biosynthesis protein FliP [Campylobacter lari RM2100]
 gi|222539204|gb|ACM64305.1| flagellar biosynthesis protein FliP [Campylobacter lari RM2100]
          Length = 244

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 99/225 (44%), Positives = 154/225 (68%), Gaps = 4/225 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           +++  ++ P         +    + TIL++AP ++ ++T F R ++VFS LRT +G  ++
Sbjct: 23  TVNLSLSAPNSPQQLVTTLNIVIVLTILALAPTIVFVMTSFLRLVVVFSFLRTALGTQTM 82

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PPN ++++LAL +TF++M P   +S   GI+P +  QI    A  +  +PF  FM  NTR
Sbjct: 83  PPNTILVTLALILTFFIMEPVATKSYNEGIKPYIAEQIGYEEAFAKGVKPFKDFMLKNTR 142

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           EKDL+LF  + +  +  T     D +   +L+P+FMISEL+ +FEIGFL+ LPFL+IDM+
Sbjct: 143 EKDLALFYRIRNLENPKT----IDDVPLTVLVPAFMISELKTAFEIGFLLFLPFLVIDMV 198

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           V++++MAMGMMMLPP  IS+PFK++ FVL+DGW+LL++NLVKSF+
Sbjct: 199 VSSVLMAMGMMMLPPVMISMPFKLLIFVLVDGWNLLIQNLVKSFL 243


>gi|154253010|ref|YP_001413834.1| flagellar biosynthetic protein FliP [Parvibaculum lavamentivorans
           DS-1]
 gi|154156960|gb|ABS64177.1| flagellar biosynthetic protein FliP [Parvibaculum lavamentivorans
           DS-1]
          Length = 248

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 113/239 (47%), Positives = 166/239 (69%), Gaps = 4/239 (1%)

Query: 7   FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
            AL L++  +     +    +++  +L ++  IV+   + T+LS+AP +LIMVT F R I
Sbjct: 12  LALVLLSFGVAQPAFAQAIQVDLSDNLGLTDHIVQIVALVTVLSLAPSILIMVTSFVRII 71

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           +V S+LRT +GM   PPN V++SLALF+T +VM+PT   +   GI+PLMN QI    A +
Sbjct: 72  VVLSLLRTALGMQQSPPNAVLVSLALFLTAFVMTPTFTTAYNEGIEPLMNQQIETAEAFE 131

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           R + PF  FM +  R++DL LF+D++ +            I  ++++P+FMISELRR+FE
Sbjct: 132 RSSVPFKTFMLSQVRKQDLQLFVDLSQTEQPEEAT----DIGLQVIVPAFMISELRRAFE 187

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGFL+ LPF++IDM+VA+++M+MGMMMLPP  ISLPFK+IFFVL+DGWSL+  +LV+SF
Sbjct: 188 IGFLVFLPFIVIDMVVASVLMSMGMMMLPPVIISLPFKLIFFVLVDGWSLIAGSLVQSF 246


>gi|117919800|ref|YP_868992.1| flagellar biosynthesis protein FliP [Shewanella sp. ANA-3]
 gi|117612132|gb|ABK47586.1| flagellar biosynthetic protein FliP [Shewanella sp. ANA-3]
          Length = 248

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 90/247 (36%), Positives = 146/247 (59%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIM 58
           ++ +   +  L    +  A   L  V    A    + + V  +   + T LS  P ++IM
Sbjct: 5   ILTFIGVSTLLFAASVGAADGVLPAVTVKTAADGSTEYSVTMQILLLMTSLSFIPAMVIM 64

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R I+V SILR  +G+   P N V+I ++LFMTF++M+P  D+  + G++P ++ Q
Sbjct: 65  LTSFTRIIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDKIYDQGVKPYIDEQ 124

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           +T   A  +  EP   FM    R  DL  F+D++       +I   +     +L+P+F+ 
Sbjct: 125 LTLQQAFDKGKEPLRAFMLGQVRTTDLKTFIDISG----YQNINSPEEAPMSVLVPAFIT 180

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P  +SLPFK++ FVL+DGW L++
Sbjct: 181 SELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWGLVM 240

Query: 239 ENLVKSF 245
             L  SF
Sbjct: 241 GTLANSF 247


>gi|296330850|ref|ZP_06873325.1| flagellar biosynthesis protein FliP [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|296151855|gb|EFG92729.1| flagellar biosynthesis protein FliP [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
          Length = 221

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 98/217 (45%), Positives = 147/217 (67%), Gaps = 4/217 (1%)

Query: 29  IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
             +D    +  V+   + T+ S+AP +LI++TCF R +IV S +RT +   S+PPN V+I
Sbjct: 9   SSSDPENVSSTVKLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATQSMPPNQVLI 68

Query: 89  SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
            LALF+TF++M+PT     +  + PLM+N+I+   A  +  EP   FM  +TR+KDL+LF
Sbjct: 69  GLALFLTFFIMAPTFSEINKEALTPLMDNKISLDEAYSKAEEPIKEFMSKHTRQKDLALF 128

Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
           M+ A              I    ++P+F ISEL+ +F+IGF+I +PFLIIDM+VA+++M+
Sbjct: 129 MNYAKMDKPE----SLKDIPLTTMVPAFAISELKTAFQIGFMIFIPFLIIDMVVASVLMS 184

Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MGMMMLPP  ISLPFK++ FVL+DGW L+V++L++SF
Sbjct: 185 MGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLLQSF 221


>gi|332531133|ref|ZP_08407047.1| flagellar biosynthesis protein FliP [Hylemonella gracilis ATCC
           19624]
 gi|332039418|gb|EGI75830.1| flagellar biosynthesis protein FliP [Hylemonella gracilis ATCC
           19624]
          Length = 267

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 96/224 (42%), Positives = 140/224 (62%), Gaps = 4/224 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           SL  +       +  +  ++T   FT LS  P +L+M+T F R +IV S+LR  +G  S 
Sbjct: 46  SLPLLTASNRGGTSYSVPIQTLLFFTALSFLPAVLLMMTGFTRIVIVLSLLRQALGTQSA 105

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PPN VII L+LF+TF+VM PT DR      QP   N +T   A+ R   P   FM   TR
Sbjct: 106 PPNQVIIGLSLFLTFFVMGPTFDRVYAEAYQPYTRNALTFEQAVDRAEVPVREFMSKQTR 165

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           + DL+LF+ ++         T  ++   R+LIP+F+ SEL+ +F+ GFLI +PFL+IDM+
Sbjct: 166 QSDLALFVRLSKL----DAATTAENAPMRVLIPAFVTSELKTAFQFGFLIFIPFLVIDMV 221

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           VA+++M++GMMML P  ++LPFK++ FVL DGW+LL+ +L  SF
Sbjct: 222 VASVLMSLGMMMLSPVLVALPFKLMLFVLADGWNLLIGSLAASF 265


>gi|4322007|gb|AAD15910.1| polar flagellar assembly protein FliP [Vibrio parahaemolyticus]
          Length = 289

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 92/219 (42%), Positives = 137/219 (62%), Gaps = 5/219 (2%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
              P      +  ++   + T+L   P ++I++T F R ++V SILR  MG+   P N V
Sbjct: 74  TTNPDGSEDYSVTLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 133

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           II +ALF+TF+VMSP L+   +  IQP +N Q+T   A      P   FM   TR KDL 
Sbjct: 134 IIGIALFLTFFVMSPVLNEINDTAIQPYLNEQVTAREAFDAAQVPMKAFMLKQTRIKDLE 193

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
            F++M+        +T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++
Sbjct: 194 TFVNMSG-----EQVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 248

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MAMGMMML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 249 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287


>gi|208434601|ref|YP_002266267.1| flagellar biosynthetic protein [Helicobacter pylori G27]
 gi|208432530|gb|ACI27401.1| flagellar biosynthetic protein [Helicobacter pylori G27]
          Length = 260

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 104/227 (45%), Positives = 157/227 (69%), Gaps = 4/227 (1%)

Query: 19  AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           A  S++  +N P D       +    + T+L +AP L++++T F R I+VFS LRT +G 
Sbjct: 35  ALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGT 94

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
              PP  +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ A PF  FM  
Sbjct: 95  QQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLK 154

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
           NTREKDL+LF  + +  +  T     D +   +LIP+FMISEL+ +F+IGFL+ LPFL+I
Sbjct: 155 NTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVI 210

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           DM++++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LL ENLV SF
Sbjct: 211 DMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 257


>gi|308273529|emb|CBX30131.1| Flagellar biosynthetic protein fliP [uncultured Desulfobacterium
           sp.]
          Length = 225

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 97/229 (42%), Positives = 147/229 (64%), Gaps = 4/229 (1%)

Query: 18  FAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMG 77
            A  SL   +    +    + +++   + T+LS+AP +LIM+T F R  IVFS LR  +G
Sbjct: 1   MAFPSLRIGVEPGENPEQVSVLIQILFLLTVLSLAPAILIMMTPFTRLAIVFSFLRQALG 60

Query: 78  MGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMR 137
               P N +I  L+LF+TF++M P         +QP +  +I++ TA++    P   FM 
Sbjct: 61  TQQTPSNQIIAGLSLFITFFIMMPQWQEINNNALQPYLEKKISQETALKEAMIPIRKFMF 120

Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197
             TREKDL++F+ M+ S   N      + I    LIP+F+ISEL+ +F IGF++ +PFLI
Sbjct: 121 RQTREKDLAIFVKMSKSEKPN----SPEDISMTTLIPAFVISELKTAFIIGFVLFVPFLI 176

Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           IDM+VA+++++MGMMMLPP  ISLPFK++ FVL+DGW+L+V ++VKSF+
Sbjct: 177 IDMVVASVLLSMGMMMLPPILISLPFKLMLFVLVDGWNLIVGSMVKSFV 225


>gi|120598260|ref|YP_962834.1| flagellar biosynthesis protein FliP [Shewanella sp. W3-18-1]
 gi|146293662|ref|YP_001184086.1| flagellar biosynthesis protein FliP [Shewanella putrefaciens CN-32]
 gi|120558353|gb|ABM24280.1| flagellar biosynthetic protein FliP [Shewanella sp. W3-18-1]
 gi|145565352|gb|ABP76287.1| flagellar biosynthetic protein FliP [Shewanella putrefaciens CN-32]
 gi|319427061|gb|ADV55135.1| flagellar biosynthetic protein FliP [Shewanella putrefaciens 200]
          Length = 248

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 90/241 (37%), Positives = 144/241 (59%), Gaps = 6/241 (2%)

Query: 7   FALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPR 64
            A+   +  +  A   L  V    A    + + V  +   + T LS  P ++IM+T F R
Sbjct: 11  LAILFFSVSVGAADGVLPAVTVKTAADGSTEYSVTMQILLLMTSLSFLPAMVIMLTSFTR 70

Query: 65  FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
            I+V SILR  +G+   P N V+I ++LFMTF++M+P  D+  + G++P ++ Q+T   A
Sbjct: 71  IIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDKIYDQGVKPYIDEQLTLQQA 130

Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
             +  EP   FM    R  DL  F+D++       +I   +     +L+P+F+ SEL+ +
Sbjct: 131 FDKGKEPLRAFMLGQVRTTDLKTFIDISG----YQNINSPEEAPMSVLVPAFITSELKTA 186

Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           F+IGF++ +PFL++D++VA+I+MAMGMMML P  +SLPFK++ FVL+DGW L++  L  S
Sbjct: 187 FQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWGLVLGTLANS 246

Query: 245 F 245
           F
Sbjct: 247 F 247


>gi|261821163|ref|YP_003259269.1| flagellar biosynthesis protein FliP [Pectobacterium wasabiae
           WPP163]
 gi|261605176|gb|ACX87662.1| flagellar biosynthetic protein FliP [Pectobacterium wasabiae
           WPP163]
          Length = 258

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 104/244 (42%), Positives = 151/244 (61%), Gaps = 4/244 (1%)

Query: 2   IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
           +RY      L     V+A+        +P      T  V+T    T L+  P  L+M+T 
Sbjct: 17  LRYSLAISLLFMAPSVWAQLPGIVTQPLPNGGQSWTLPVQTLVFLTSLTFIPAALLMMTS 76

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F R IIV S+LR  +G  + PPN V++ L LF+TF+VMSP L+R  E    P   +QI+ 
Sbjct: 77  FTRIIIVLSLLRNALGTPTAPPNQVLLGLTLFLTFFVMSPVLNRVYEEAYLPFSQDQISM 136

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
             AI+R AEP   FM   TRE DL+LF  +A       +I   + +  R+L+P+F+ SEL
Sbjct: 137 EVAIERGAEPVREFMLRQTRETDLALFTRLAEIP----EIQGPEAVPMRVLLPAFVTSEL 192

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
           + +F+IGF + +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L
Sbjct: 193 KTAFQIGFTVFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSL 252

Query: 242 VKSF 245
            +SF
Sbjct: 253 AQSF 256


>gi|212639551|ref|YP_002316071.1| flagellar biosynthesis protein FliP [Anoxybacillus flavithermus
           WK1]
 gi|212561031|gb|ACJ34086.1| Flagellar biosynthesis pathway, component FliP [Anoxybacillus
           flavithermus WK1]
          Length = 221

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 94/195 (48%), Positives = 136/195 (69%), Gaps = 4/195 (2%)

Query: 51  IAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMG 110
           IAP +LIMVT F R +IV S +RT +G   +PPN V+I L+LF+TF++M+PT  +     
Sbjct: 31  IAPGILIMVTSFTRIVIVLSFVRTALGTQQMPPNQVMIGLSLFLTFFIMAPTFQQINRDA 90

Query: 111 IQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYR 170
           +QPL + +I    A +R   P   FM  +TR+KDL+LF+  A +    T       I   
Sbjct: 91  LQPLFDEKINLEQAYERAEAPLKEFMSKHTRQKDLALFLSYAGAEQPKT----VQDIPMS 146

Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230
            L+P+F ISEL+ +F+IGF++ +PFL+IDMIVA+++M+MGMMMLPP  ISLPFK++ FVL
Sbjct: 147 ALVPAFAISELKTAFQIGFMLFIPFLVIDMIVASVLMSMGMMMLPPVMISLPFKILLFVL 206

Query: 231 IDGWSLLVENLVKSF 245
           +DGW L+V++L++SF
Sbjct: 207 VDGWYLVVKSLLESF 221


>gi|167040314|ref|YP_001663299.1| flagellar biosynthesis protein FliP [Thermoanaerobacter sp. X514]
 gi|256750756|ref|ZP_05491641.1| flagellar biosynthetic protein FliP [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300914398|ref|ZP_07131714.1| flagellar biosynthetic protein FliP [Thermoanaerobacter sp. X561]
 gi|307724366|ref|YP_003904117.1| flagellar biosynthetic protein FliP [Thermoanaerobacter sp. X513]
 gi|166854554|gb|ABY92963.1| flagellar biosynthetic protein FliP [Thermoanaerobacter sp. X514]
 gi|256750339|gb|EEU63358.1| flagellar biosynthetic protein FliP [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300889333|gb|EFK84479.1| flagellar biosynthetic protein FliP [Thermoanaerobacter sp. X561]
 gi|307581427|gb|ADN54826.1| flagellar biosynthetic protein FliP [Thermoanaerobacter sp. X513]
          Length = 221

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 92/223 (41%), Positives = 147/223 (65%), Gaps = 5/223 (2%)

Query: 23  LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82
           L D+++     S     ++   + T+L++AP +LIM+T F R +IV S LR  +G+  +P
Sbjct: 3   LGDLVSSVTAPSNMATSLQIVLLLTVLTLAPSILIMMTSFTRIVIVLSFLRNALGLQQMP 62

Query: 83  PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142
           PN V+I LALF+T ++M+P         I+P    +IT+  A Q   +P   FM   TR+
Sbjct: 63  PNQVLIGLALFLTLFIMAPIGQDINNNAIKPYTEGKITQEEAYQNTIKPLKNFMLKQTRQ 122

Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202
            DL+LF+ +A       +I   + +  R++IP+F+ISEL+ +F+IGF++ +PFLIID++V
Sbjct: 123 NDLNLFVSLA-----KININNVEELPMRVVIPAFIISELKTAFQIGFILYIPFLIIDIVV 177

Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           A+++M+MGM MLPP  ISLPFKV+ F+L+DGW+L+V++L+  F
Sbjct: 178 ASVLMSMGMFMLPPVLISLPFKVLLFILVDGWNLVVKSLILGF 220


>gi|26991044|ref|NP_746469.1| flagellar biosynthesis protein FliP [Pseudomonas putida KT2440]
 gi|24986076|gb|AAN69933.1|AE016632_4 flagellar biosynthetic protein FliP [Pseudomonas putida KT2440]
 gi|5921665|gb|AAD01927.2| FliP [Pseudomonas putida]
 gi|313497809|gb|ADR59175.1| FliP [Pseudomonas putida BIRD-1]
          Length = 251

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 96/220 (43%), Positives = 140/220 (63%), Gaps = 4/220 (1%)

Query: 26  VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
           + N P      +  ++   I T LS  P  +I++T F R IIVFSILR  +G+   P N 
Sbjct: 33  LSNTPDGQQEYSVSLQILLIMTALSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQ 92

Query: 86  VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145
           ++  +ALF+T ++M+P  DR  +  +QP +  Q+T   AI +   P   FM   TR+ DL
Sbjct: 93  LLTGMALFLTMFIMAPVFDRVNQDALQPYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDL 152

Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
            LFM ++    + TDI   D +   IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA++
Sbjct: 153 DLFMRLS----KRTDIAGPDQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASV 208

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +MAMGMMML P  ISLPFK++ FVL+DGW+L++  L  SF
Sbjct: 209 LMAMGMMMLSPLIISLPFKIMLFVLVDGWALIMGTLASSF 248


>gi|212709502|ref|ZP_03317630.1| hypothetical protein PROVALCAL_00544 [Providencia alcalifaciens DSM
           30120]
 gi|212687840|gb|EEB47368.1| hypothetical protein PROVALCAL_00544 [Providencia alcalifaciens DSM
           30120]
          Length = 247

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 101/241 (41%), Positives = 147/241 (60%), Gaps = 4/241 (1%)

Query: 5   CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
              AL L  P+   A         +       +  V+T    T+L   P +L+M+T F R
Sbjct: 9   IISALLLALPQSASAALPAVISHTLADGGQSWSLPVQTLLFLTLLGFIPAMLLMMTSFTR 68

Query: 65  FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
            IIV  +LR  +G  S PPN V++ LALF+TF+VMSP  D+      QP   ++I+  TA
Sbjct: 69  IIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFVMSPVADQVYREAYQPFSEDKISLETA 128

Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
           +++   P   FM   TRE DL+LF  +A       DI +   +  RILIP+F+ SEL+ +
Sbjct: 129 LEKGTAPLRTFMLGQTRESDLALFARIAKVG----DIQEAKDVPMRILIPAFITSELKTA 184

Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           F+IGF I +PFLIID++VA+++MA+GMMM+PP ++SLPFK++ FVL+DGW LL+ +L +S
Sbjct: 185 FQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGWQLLLGSLSQS 244

Query: 245 F 245
           F
Sbjct: 245 F 245


>gi|210134891|ref|YP_002301330.1| flagellar biosynthesis protein FliP [Helicobacter pylori P12]
 gi|210132859|gb|ACJ07850.1| flagellar biosynthetic protein [Helicobacter pylori P12]
          Length = 260

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 106/244 (43%), Positives = 162/244 (66%), Gaps = 6/244 (2%)

Query: 4   YCFFALFLVTPELVF--AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
           +      L+ P +    A  S++  +N P D       +    + T+L +AP L++++T 
Sbjct: 18  FLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTS 77

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F R I+VFS LRT +G    PP  +++SL+L +TF++M P+L ++ + GI+P M+ +I+ 
Sbjct: 78  FTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISY 137

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
           T A ++ A PF  FM  NTREKDL+LF  + +  +  T     D +   +LIP+FMISEL
Sbjct: 138 TEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISEL 193

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
           + +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LL ENL
Sbjct: 194 KTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENL 253

Query: 242 VKSF 245
           V SF
Sbjct: 254 VASF 257


>gi|16078698|ref|NP_389517.1| flagellar biosynthesis protein FliP [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221309513|ref|ZP_03591360.1| flagellar biosynthesis protein FliP [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313837|ref|ZP_03595642.1| flagellar biosynthesis protein FliP [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318760|ref|ZP_03600054.1| flagellar biosynthesis protein FliP [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323032|ref|ZP_03604326.1| flagellar biosynthesis protein FliP [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321315402|ref|YP_004207689.1| flagellar biosynthesis protein FliP [Bacillus subtilis BSn5]
 gi|544315|sp|P35528|FLIP_BACSU RecName: Full=Flagellar biosynthetic protein fliP
 gi|142931|gb|AAA22453.1| flagellar protein [Bacillus subtilis]
 gi|2634007|emb|CAB13508.1| component of the flagellar export machinery [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|291484188|dbj|BAI85263.1| flagellar biosynthesis protein FliP [Bacillus subtilis subsp. natto
           BEST195]
 gi|320021676|gb|ADV96662.1| flagellar biosynthesis protein FliP [Bacillus subtilis BSn5]
          Length = 221

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 98/217 (45%), Positives = 147/217 (67%), Gaps = 4/217 (1%)

Query: 29  IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
             +D    +  V+   + T+ S+AP +LI++TCF R +IV S +RT +   S+PPN V+I
Sbjct: 9   SSSDPENVSSTVKLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATQSMPPNQVLI 68

Query: 89  SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
            LALF+TF++M+PT     +  + PLM+N+I+   A  +  EP   FM  +TR+KDL+LF
Sbjct: 69  GLALFLTFFIMAPTFSEINKEALTPLMDNKISLDEAYTKAEEPIKEFMSKHTRQKDLALF 128

Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
           M+ A              I    ++P+F ISEL+ +F+IGF+I +PFLIIDM+VA+++M+
Sbjct: 129 MNYAKMDKPE----SLKDIPLTTMVPAFAISELKTAFQIGFMIFIPFLIIDMVVASVLMS 184

Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MGMMMLPP  ISLPFK++ FVL+DGW L+V++L++SF
Sbjct: 185 MGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLLQSF 221


>gi|289578418|ref|YP_003477045.1| flagellar biosynthetic protein FliP [Thermoanaerobacter italicus
           Ab9]
 gi|297544694|ref|YP_003676996.1| flagellar biosynthetic protein FliP [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|289528131|gb|ADD02483.1| flagellar biosynthetic protein FliP [Thermoanaerobacter italicus
           Ab9]
 gi|296842469|gb|ADH60985.1| flagellar biosynthetic protein FliP [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 221

 Score =  205 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 94/223 (42%), Positives = 147/223 (65%), Gaps = 5/223 (2%)

Query: 23  LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82
           L D+ +     S     ++   + T+L++AP +LIM+T F R +IV S LR  +G+  +P
Sbjct: 3   LGDLASSVTAPSNMATSLQIVLLLTVLTLAPSILIMMTSFTRIVIVLSFLRNALGLQQMP 62

Query: 83  PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142
           PN V+I LALF+T ++M+P         I+P    +IT+  A Q   +P   FM   TR+
Sbjct: 63  PNQVLIGLALFLTLFIMAPIGQDINNNAIKPYTEGKITQEEAYQNAIKPLKSFMLKQTRQ 122

Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202
            DL+LF+ +A       +++  + +  R++IP+F+ISEL+ +FEIGF+I +PFLIID+IV
Sbjct: 123 NDLNLFVSLA-----KINVSNVEDLPMRVVIPAFIISELKTAFEIGFIIYIPFLIIDIIV 177

Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           A+++M+MGM MLPP  ISLPFKV+ F+L+DGW+L+V++L+  F
Sbjct: 178 ASVLMSMGMFMLPPVLISLPFKVLLFILVDGWNLVVKSLILGF 220


>gi|261209859|ref|ZP_05924160.1| flagellar biosynthesis protein FliP [Vibrio sp. RC341]
 gi|260841045|gb|EEX67570.1| flagellar biosynthesis protein FliP [Vibrio sp. RC341]
          Length = 299

 Score =  205 bits (523), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 90/219 (41%), Positives = 138/219 (63%), Gaps = 5/219 (2%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
              P      +  ++   + T+L   P ++I++T F R ++V SILR  MG+   P N V
Sbjct: 84  TTNPDGSEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 143

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           II +ALF+TF++M+P  ++  E  +QP +N QI+   A     EP   FM   TR KDL 
Sbjct: 144 IIGIALFLTFFIMAPVFNQINEQAVQPYLNEQISARQAFDLAQEPMKAFMLKQTRVKDLE 203

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
            F++M+        +T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++
Sbjct: 204 TFVEMSG-----AQVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 258

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MAMGMMML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 259 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 297


>gi|209695730|ref|YP_002263660.1| flagellar biosynthesis protein FliP [Aliivibrio salmonicida
           LFI1238]
 gi|208009683|emb|CAQ79982.1| polar flagellar assembly protein FliP [Aliivibrio salmonicida
           LFI1238]
          Length = 289

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 86/219 (39%), Positives = 137/219 (62%), Gaps = 5/219 (2%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
               +     +  ++  G+ T+L   P ++I++T F R ++V SILR  MG+   P N V
Sbjct: 74  TTNASGGEDYSVNLQILGLMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 133

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           II +A+F+TF++M+P  D+  E  IQP +  +IT   A      P   FM   TR KDL 
Sbjct: 134 IIGIAMFLTFFIMAPVFDKVNETAIQPYIGEEITAREAFDAAQIPMKEFMLAQTRVKDLE 193

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
            F++M+       ++   + +   ++IP+F+ SEL+ +F++GF++ LPFLIID++VA+++
Sbjct: 194 TFVNMSGV-----EVENPEDVPITVVIPAFITSELKTAFQMGFMLFLPFLIIDLVVASVL 248

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MAMGMMML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 249 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287


>gi|28899013|ref|NP_798618.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260365241|ref|ZP_05777798.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus K5030]
 gi|260878791|ref|ZP_05891146.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus
           AN-5034]
 gi|260897386|ref|ZP_05905882.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus
           Peru-466]
 gi|28807232|dbj|BAC60502.1| polar flagellar assembly protein FliP [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308088270|gb|EFO37965.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus
           Peru-466]
 gi|308094309|gb|EFO44004.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus
           AN-5034]
 gi|308115428|gb|EFO52968.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus K5030]
          Length = 289

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 92/219 (42%), Positives = 137/219 (62%), Gaps = 5/219 (2%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
              P      +  ++   + T+L   P ++I++T F R ++V SILR  MG+   P N V
Sbjct: 74  TTNPDGSEDYSVTLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 133

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           II +ALF+TF+VMSP L+   +  IQP +N Q+T   A      P   FM   TR KDL 
Sbjct: 134 IIGIALFLTFFVMSPVLNEINDTAIQPYLNEQVTAREAFDAAQVPMKAFMLKQTRIKDLE 193

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
            F++M+        +T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++
Sbjct: 194 TFVNMSG-----EQVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 248

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MAMGMMML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 249 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 287


>gi|251797428|ref|YP_003012159.1| flagellar biosynthetic protein FliP [Paenibacillus sp. JDR-2]
 gi|247545054|gb|ACT02073.1| flagellar biosynthetic protein FliP [Paenibacillus sp. JDR-2]
          Length = 256

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 101/238 (42%), Positives = 157/238 (65%), Gaps = 6/238 (2%)

Query: 10  FLVTPELVFAKSSLHDVMNIPADLS--ISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67
            ++     FA   L ++     D S    T  +    + T+LSIAP +L+++T F R +I
Sbjct: 21  VMLLQSHAFAADPLPNLDISIGDGSEEPGTSALSLLLLITVLSIAPAILVLMTSFTRIVI 80

Query: 68  VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
           V   +RT +G   +PPN V+I LA+F+TF++M+PT  +  E+ +QP +  +IT+T A+++
Sbjct: 81  VLGFVRTSLGTQQMPPNQVLIGLAMFLTFFIMAPTFSQVNEVALQPYLKGEITQTVALEK 140

Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
            A+P   FM ++TREKDL LF++   +        K   I   +L+P++ ISEL+ +F++
Sbjct: 141 AADPMKKFMISHTREKDLLLFLNYTKTEKPE----KYQDIPITVLVPAYAISELKTAFQM 196

Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GF+I +PFL+IDMIVA+ +MAMGMMMLPP  ISLPFK++ FVL+DGW L+V++L+ SF
Sbjct: 197 GFMIFIPFLVIDMIVASTLMAMGMMMLPPVMISLPFKLLLFVLVDGWYLIVKSLLLSF 254


>gi|109899342|ref|YP_662597.1| flagellar biosynthesis protein FliP [Pseudoalteromonas atlantica
           T6c]
 gi|109701623|gb|ABG41543.1| flagellar biosynthetic protein FliP [Pseudoalteromonas atlantica
           T6c]
          Length = 251

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 88/236 (37%), Positives = 140/236 (59%), Gaps = 5/236 (2%)

Query: 12  VTPELVFAKSSLHDVMNIPADLSIS--TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVF 69
           + P  V A+  +  +            T  ++   I T LS+ P  ++M+T F R IIV 
Sbjct: 15  MVPSWVLAEPGIPALTMTENADGSQDYTMTLQVVAIMTALSLLPAFIMMMTSFTRIIIVL 74

Query: 70  SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129
           SILR  +G+   P N ++I ++LF++ ++M+P  ++  E  +QP ++ QIT   A +   
Sbjct: 75  SILRQAIGLQQSPSNQILIGVSLFLSMFIMAPVFEKINETALQPYLSEQITSIQAYELAK 134

Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189
           EP   FM   TR KDL  F+++           +   +   +LIP+F+ SEL+ +F+IGF
Sbjct: 135 EPLRGFMLAQTRIKDLETFVEI---GGYEDQFQEPADVPMNVLIPAFVTSELKTAFQIGF 191

Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++ +PFLI+D++VA+I+MAMGMMML P  +SLPFK++ FVL+DGW+L+   L  SF
Sbjct: 192 MLFIPFLILDLVVASILMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLIFGTLANSF 247


>gi|114046865|ref|YP_737415.1| flagellar biosynthesis protein FliP [Shewanella sp. MR-7]
 gi|113888307|gb|ABI42358.1| flagellar biosynthetic protein FliP [Shewanella sp. MR-7]
          Length = 248

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 91/247 (36%), Positives = 146/247 (59%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIM 58
           ++    F+  L    +  A   L  V    A    + + V  +   + T LS  P ++IM
Sbjct: 5   ILTLIGFSTLLFAASVGAADGVLPAVTVKTAADGSTEYSVTMQILLLMTSLSFIPAMVIM 64

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R I+V SILR  +G+   P N V+I ++LFMTF++M+P  D+  + G++P ++ Q
Sbjct: 65  LTSFTRIIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDKIYDQGVKPYIDEQ 124

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           +T   A  +  EP   FM    R  DL  F+D++       +I   +     +L+P+F+ 
Sbjct: 125 LTLQQAFDKGKEPLRAFMLGQVRTTDLKTFIDISG----YQNINSPEEAPMSVLVPAFIT 180

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P  +SLPFK++ FVL+DGW L++
Sbjct: 181 SELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWGLVM 240

Query: 239 ENLVKSF 245
             L  SF
Sbjct: 241 GTLANSF 247


>gi|85711032|ref|ZP_01042092.1| flagellar biosynthesis protein [Idiomarina baltica OS145]
 gi|85694945|gb|EAQ32883.1| flagellar biosynthesis protein [Idiomarina baltica OS145]
          Length = 249

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 97/247 (39%), Positives = 147/247 (59%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVM--NIPADLSISTWIVRTFGIFTILSIAPILLIM 58
           ++  CF  L L+ P++  A   +  V     P      +  ++   I T L+  P ++IM
Sbjct: 5   LLLGCFVLLALLLPDVANAMQDISAVTVKTNPDGSEEYSVTLQILAIMTALTFIPAMVIM 64

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R I+V +ILR  +G+   P N V+I + LF+TF++MSP L    +  +QP +N +
Sbjct: 65  MTSFTRIIVVLAILRQAIGLQQSPSNQVLIGITLFLTFFIMSPVLTEINDKALQPYLNEE 124

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           +T   A+ R   P   FM   TR  D+  F D+A      T+I   +     ILIPSF+ 
Sbjct: 125 VTSMEAVDRAKAPLKAFMLAQTRVTDIQTFADIAG----ETNIQSPEDTPMSILIPSFIT 180

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P  +SLPFK++ FVL+DGW+L +
Sbjct: 181 SELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLTM 240

Query: 239 ENLVKSF 245
             L  SF
Sbjct: 241 STLAGSF 247


>gi|15895419|ref|NP_348768.1| flagellar biosynthesis protein FliP [Clostridium acetobutylicum
           ATCC 824]
 gi|15025142|gb|AAK80108.1|AE007715_13 Flagellar biosynthesis protein FliP [Clostridium acetobutylicum
           ATCC 824]
 gi|325509565|gb|ADZ21201.1| flagellar biosynthesis protein FliP [Clostridium acetobutylicum EA
           2018]
          Length = 261

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 87/193 (45%), Positives = 134/193 (69%), Gaps = 4/193 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +++M+T F R I+V   LRT MG    PPN V+I LALF+T ++M PT  +  +  IQ
Sbjct: 71  PSIIMMMTSFTRIIVVLGFLRTSMGTQQSPPNQVLIGLALFLTMFIMMPTYKQINKNAIQ 130

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P +N  I++  A+  + +P   FM   T +KDL LF+D+ + S + T     D + +  +
Sbjct: 131 PYLNKSISQQQALLEMEKPLRTFMYKQTYQKDLKLFIDLDNQSGKIT----KDTVPFHDI 186

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           +P+F+ISEL+ +F IGFL+ +PFLIID++VA+I+M+MGMMMLPP  +S+PFK++ F+++D
Sbjct: 187 VPAFIISELKTAFTIGFLLYIPFLIIDLVVASILMSMGMMMLPPVMVSMPFKLLLFIMVD 246

Query: 233 GWSLLVENLVKSF 245
           GW L+V++LV SF
Sbjct: 247 GWYLIVKSLVLSF 259


>gi|325288789|ref|YP_004264970.1| flagellar biosynthetic protein FliP [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324964190|gb|ADY54969.1| flagellar biosynthetic protein FliP [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 250

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 108/242 (44%), Positives = 156/242 (64%), Gaps = 6/242 (2%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
           +   +L L+ P+ V A     D+ N P + + S   ++ F I T+LS+ P +L+++T F 
Sbjct: 14  FILVSLLLLLPQGVRAAGINLDLGNTPVEQTSSA--IQIFLIMTVLSLVPAILVLMTSFT 71

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
           R I+V S +R  MG   +PPN VII LAL +TF+VM+PT  +     I+P + NQI+   
Sbjct: 72  RIIVVLSFVRNAMGTQQLPPNQVIIGLALILTFFVMAPTFSQVNTNAIKPYIENQISREE 131

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
           A+ R   P   FM   TREKDL+LF+ ++      T       I   +L+PSF+ISEL+ 
Sbjct: 132 ALTRAEAPLREFMIKQTREKDLALFVGLSQIPQPKTYR----DIPTYVLVPSFVISELKT 187

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
           +F+IGF I +PF+IIDMIVA+ +M+MGMMMLPP  ISLPFK++ FV++DGW L+V++LV 
Sbjct: 188 AFQIGFAIFIPFMIIDMIVASTLMSMGMMMLPPMMISLPFKILLFVIVDGWYLIVQSLVA 247

Query: 244 SF 245
           SF
Sbjct: 248 SF 249


>gi|153803026|ref|ZP_01957612.1| flagellar biosynthetic protein FliP [Vibrio cholerae MZO-3]
 gi|124121424|gb|EAY40167.1| flagellar biosynthetic protein FliP [Vibrio cholerae MZO-3]
          Length = 299

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 89/206 (43%), Positives = 135/206 (65%), Gaps = 5/206 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   + T+L   P ++I++T F R ++V SILR  MG+   P N VII +ALF+TF++M
Sbjct: 97  LQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFIM 156

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +P  ++  E  +QP +N QIT   A     EP   FM   TR  DL  F++M+       
Sbjct: 157 APVFNQINEQAVQPYLNEQITARQAFDLAQEPLKAFMLKQTRVNDLETFVEMSG-----A 211

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGMMML P  +
Sbjct: 212 QVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGMMMLSPMIV 271

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 272 SLPFKLMLFVLVDGWNLILSTLAGSF 297


>gi|163801855|ref|ZP_02195752.1| flagellar biosynthesis protein P [Vibrio sp. AND4]
 gi|159174363|gb|EDP59167.1| flagellar biosynthesis protein P [Vibrio sp. AND4]
          Length = 289

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 92/209 (44%), Positives = 136/209 (65%), Gaps = 5/209 (2%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  ++   + T+L   P ++I++T F R ++V SILR  MG+   P N VII +ALF+TF
Sbjct: 84  SVTLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTF 143

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           +VMSP L+   +  IQP +N Q+T   A      P   FM   TR KDL  F+DM+    
Sbjct: 144 FVMSPVLNEINDNAIQPYLNEQLTARQAFDTAQVPMKAFMLKQTRIKDLETFVDMSG--- 200

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
               +T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGMMML P
Sbjct: 201 --EQVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGMMMLSP 258

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 259 MIVSLPFKLMLFVLVDGWNLILSTLAGSF 287


>gi|32471369|ref|NP_864362.1| flagellar biosynthesis protein FliP [Rhodopirellula baltica SH 1]
 gi|32443210|emb|CAD72041.1| flagellar biosynthetic protein fliP-putative tr FT ansporter of
           flagellar proteins [Rhodopirellula baltica SH 1]
          Length = 336

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 88/229 (38%), Positives = 141/229 (61%), Gaps = 7/229 (3%)

Query: 21  SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
           +   D    P  L+ S   ++   + T+LS+AP +L+M TC+ R IIV  +LR  +G+ S
Sbjct: 107 AGGPDEWTSPEGLAGS---LQVMLLLTVLSLAPAILLMTTCYVRIIIVLGLLRQAIGLQS 163

Query: 81  VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ--ITETTAIQRVAEPFWVFMRN 138
           +PP+ V+ S+ALFMT +VM+P   R  +  I+P  + +  +T   A ++ A P   FM  
Sbjct: 164 LPPSQVMTSVALFMTLFVMTPVWTRVYDDAIKPYTDPEVEMTLEEAFEKGAIPIREFMAW 223

Query: 139 NTR--EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
             R    +  + +   +        +  D +  R+L+P+F++SEL+ SF +GF I LPFL
Sbjct: 224 QIREARNEDDVVLFYGYMDPDAVVPSTFDDVPLRVLLPAFILSELKTSFLMGFQIYLPFL 283

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           I+D++VA++ ++MGM+MLPP  I+LPFK++ FVL+DGW L+VE L+ SF
Sbjct: 284 IVDLVVASVTISMGMLMLPPAVIALPFKLLLFVLVDGWRLVVEMLMNSF 332


>gi|261344130|ref|ZP_05971774.1| flagellar biosynthetic protein FliP [Providencia rustigianii DSM
           4541]
 gi|282567722|gb|EFB73257.1| flagellar biosynthetic protein FliP [Providencia rustigianii DSM
           4541]
          Length = 247

 Score =  205 bits (522), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 96/232 (41%), Positives = 145/232 (62%), Gaps = 4/232 (1%)

Query: 14  PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73
           P+   A        ++       +  V+T    T+L   P +L+M+T F R IIV  +LR
Sbjct: 18  PQSASAALPAVISHSLTDGGQSWSLPVQTLLFLTLLGFIPAMLLMMTSFTRIIIVLGLLR 77

Query: 74  TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133
             +G  S PPN V++ LALF+TF+VMSP  D+      QP   ++I+  TA+++   P  
Sbjct: 78  NALGTPSAPPNQVLLGLALFLTFFVMSPVADQVYREAYQPFSEDKISLETALEKGTAPLR 137

Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
            FM   TRE DL+LF  +A       +I +   +  RIL+P+F+ SEL+ +F+IGF I +
Sbjct: 138 TFMLGQTRESDLALFARIAKVG----EIQEAKDVPMRILVPAFITSELKTAFQIGFTIFI 193

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           PFLIID++VA+++MA+GMMM+PP ++SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 194 PFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGWQLLLGSLSQSF 245


>gi|295097216|emb|CBK86306.1| flagellar biosynthetic protein FliP [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 247

 Score =  205 bits (522), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 97/245 (39%), Positives = 153/245 (62%), Gaps = 4/245 (1%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           +I      + L+ P      ++    +      +  T  ++T  + +  +  P +L+M+T
Sbjct: 5   LIARAATGVGLLLPVASALAANGDITLASSPGSAGWTLPIQTLLLLSGFTFIPAVLLMMT 64

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R +IV  ++R  +G  + PPN V++ LALF+TF+VMSP L++  E   QPL  N+IT
Sbjct: 65  GFTRIVIVLGLMRNALGTPTAPPNQVLVGLALFLTFFVMSPVLNQIYEQAWQPLQANKIT 124

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
             TA++   +P   FM   TRE DL++F  +A +      +T  + +   IL+PSF+ SE
Sbjct: 125 METALKEGVKPLRAFMLEQTREADLAMFARIAKTP----TLTGPEDVPLSILVPSFVTSE 180

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +F+IGF I +PFLIID++VA+I+MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +
Sbjct: 181 LKTAFQIGFTIFIPFLIIDLVVASILMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGS 240

Query: 241 LVKSF 245
           L +SF
Sbjct: 241 LAQSF 245


>gi|225159018|ref|ZP_03725328.1| Triacylglycerol lipase [Opitutaceae bacterium TAV2]
 gi|224802397|gb|EEG20659.1| Triacylglycerol lipase [Opitutaceae bacterium TAV2]
          Length = 297

 Score =  205 bits (521), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 82/223 (36%), Positives = 145/223 (65%), Gaps = 5/223 (2%)

Query: 23  LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82
           L   +         +  ++   + T+L++AP L++++T F R +IV  ++RT +G+ + P
Sbjct: 78  LAIDLEGGGKPGEISVGLQIVVVMTLLTVAPSLILLMTSFTRLVIVLGLVRTALGVPNAP 137

Query: 83  PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142
            N ++I L+LF+T ++M P + R+ +  +QP M  ++    A+ + AEP   FM   TR 
Sbjct: 138 ANQIVIGLSLFLTIFIMGPVIQRANQEALQPYMAGEMRSADALAKAAEPVKEFMLKQTRT 197

Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202
           +DL  F+ +          T+   +  R++IP+F+ISEL+ +F++GFL+ LPFL+ID++V
Sbjct: 198 RDLEFFLQLGRFPP-----TRVQDLPLRVVIPAFVISELQTAFQMGFLLFLPFLVIDLLV 252

Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++ +M++GMMM+PP  +SLPFK++ FVL+DGW L+V++LV+SF
Sbjct: 253 SSTLMSLGMMMMPPAIVSLPFKLLLFVLVDGWHLVVKSLVESF 295


>gi|126462466|ref|YP_001043580.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides ATCC
           17029]
 gi|126104130|gb|ABN76808.1| flagellar biosynthetic protein FliP [Rhodobacter sphaeroides ATCC
           17029]
          Length = 301

 Score =  205 bits (521), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 89/220 (40%), Positives = 138/220 (62%), Gaps = 4/220 (1%)

Query: 26  VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
            +      +  +  ++   + T L++ P L++ ++ F R IIV SILR  +G    PPN 
Sbjct: 83  TVTEGTGGTSYSLSLQILALMTALTVLPSLVLGMSAFTRIIIVLSILRQALGTQQTPPNQ 142

Query: 86  VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145
           V+I+LALF+TF+VM PTL    E  + P ++ QI    AI+R       F+  NTR+ DL
Sbjct: 143 VLIALALFLTFFVMQPTLGALYEQSLSPFLDGQIEAQPAIERGGAIMKDFLIANTRQNDL 202

Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
            +F D+A +        +   + +  L+P+FM SEL+ +F+IGFL+ LPFL+IDM++A+I
Sbjct: 203 LMFSDLAGAG----PYAEPTEVPFSTLLPAFMTSELKTAFQIGFLLFLPFLVIDMVIASI 258

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +MA+GMMML P  +SLPFK++ FVL+DGW+L V +L  ++
Sbjct: 259 LMALGMMMLSPMLVSLPFKLLLFVLVDGWALTVGSLAATY 298


>gi|269103167|ref|ZP_06155864.1| flagellar biosynthesis protein FliP [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163065|gb|EEZ41561.1| flagellar biosynthesis protein FliP [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 272

 Score =  205 bits (521), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 91/221 (41%), Positives = 140/221 (63%), Gaps = 5/221 (2%)

Query: 25  DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
            V   P      +  ++   + T L   P ++I++T F R ++V SILR  +G+   P N
Sbjct: 55  SVTVNPDGSEDYSVTLQILALMTALGFLPAIVILMTSFTRIVVVMSILRQALGLQQTPSN 114

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
            VII +ALF+TF+VMSP LDR     +QP +N QIT   A+++   P   FM   TR KD
Sbjct: 115 QVIIGIALFLTFFVMSPVLDRINAQAVQPYINEQITAPQALEKAKVPMREFMLKQTRVKD 174

Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
           L  F++++ +      ++    +   +LIP+F+ SEL+ +F+IGF++ LPFL+ID++VA+
Sbjct: 175 LETFVNISGAK-----VSDPQQVPMTVLIPAFITSELKTAFQIGFMLFLPFLVIDLVVAS 229

Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++MAMGMMML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 230 VLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 270


>gi|296186695|ref|ZP_06855097.1| flagellar biosynthetic protein FliP [Clostridium carboxidivorans
           P7]
 gi|296048732|gb|EFG88164.1| flagellar biosynthetic protein FliP [Clostridium carboxidivorans
           P7]
          Length = 258

 Score =  205 bits (521), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 97/244 (39%), Positives = 150/244 (61%), Gaps = 8/244 (3%)

Query: 6   FFALFLVTPELVFAKSSLHDVMNIPADLSISTWI----VRTFGIFTILSIAPILLIMVTC 61
            F +F  +      ++     +NI  D + +       ++   + TIL+I P  ++M+T 
Sbjct: 18  IFLMFAASKVYAAPEAFPIPKVNISVDNASTPQQYVGNIKLLIMLTILTILPSFIMMMTS 77

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F R I+VF  LR  MG    PPN ++I LALF+T ++M P   +     IQP M N+IT+
Sbjct: 78  FVRIIVVFGFLRGAMGTQQSPPNTILIGLALFLTVFIMQPVYSKVNTNAIQPYMQNKITQ 137

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
             AI   A+P   FM   T +KD  LF+D A  +++ T     D+    +++P+FMISEL
Sbjct: 138 EQAIDEGAKPLRQFMLKYTYKKDFQLFIDTAKVNYKIT----KDNAPLYVVVPAFMISEL 193

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
           + +F IGF++ +PF+IID++VA+++M+MGM MLPP  +SLPFK++ FV++DGW LLV++L
Sbjct: 194 KTAFMIGFMLYIPFMIIDLVVASVLMSMGMFMLPPAMVSLPFKLLLFVMVDGWYLLVKSL 253

Query: 242 VKSF 245
           V SF
Sbjct: 254 VSSF 257


>gi|311030115|ref|ZP_07708205.1| flagellar biosynthesis protein FliP [Bacillus sp. m3-13]
          Length = 221

 Score =  205 bits (521), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 97/217 (44%), Positives = 148/217 (68%), Gaps = 4/217 (1%)

Query: 29  IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
              + S  +  V+   + T+ S+AP +LI++T F R IIV S +RT +   S+PPN V+I
Sbjct: 9   SGNEASTVSTSVQLLLLLTVFSLAPAILILMTSFTRIIIVLSFVRTSLATQSMPPNQVLI 68

Query: 89  SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
            LALF+TF++M+PT  +  +  +QPL N +IT   A ++ + P   FM  +TR+KDL+LF
Sbjct: 69  GLALFLTFFIMAPTFSQVNDQALQPLFNEEITLDEAYEKASIPLKEFMSKHTRQKDLALF 128

Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
           +D A            + I   +L+P+F ISEL+ +F+IGF+I +PFL+IDM+VA+++M+
Sbjct: 129 IDYAGMERPE----SIEDIPLTVLVPAFAISELKTAFQIGFMIFIPFLVIDMVVASVLMS 184

Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MGMMMLPP  ISLPFK++ FVL+DGW L+V++L+ +F
Sbjct: 185 MGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLLLTF 221


>gi|156975420|ref|YP_001446327.1| flagellar biosynthesis protein FliP [Vibrio harveyi ATCC BAA-1116]
 gi|156527014|gb|ABU72100.1| hypothetical protein VIBHAR_03151 [Vibrio harveyi ATCC BAA-1116]
          Length = 289

 Score =  205 bits (521), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 91/209 (43%), Positives = 136/209 (65%), Gaps = 5/209 (2%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  ++   + T+L   P ++I++T F R ++V SILR  MG+   P N VII +ALF+TF
Sbjct: 84  SVTLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTF 143

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           +VMSP L+   +  IQP +N Q+T   A      P   FM   TR KDL  F++M+    
Sbjct: 144 FVMSPVLNEINDNAIQPYLNEQVTARQAFDAAQVPMKAFMLKQTRIKDLETFVNMSG--- 200

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
               +T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGMMML P
Sbjct: 201 --EQVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGMMMLSP 258

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 259 MIVSLPFKLMLFVLVDGWNLILSTLAGSF 287


>gi|308068668|ref|YP_003870273.1| flagellar biosynthetic protein fliP [Paenibacillus polymyxa E681]
 gi|310641559|ref|YP_003946317.1| flagellar transport protein flip [Paenibacillus polymyxa SC2]
 gi|305857947|gb|ADM69735.1| Flagellar biosynthetic protein fliP [Paenibacillus polymyxa E681]
 gi|309246509|gb|ADO56076.1| Flagellar transport protein FliP [Paenibacillus polymyxa SC2]
          Length = 251

 Score =  205 bits (521), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 92/249 (36%), Positives = 149/249 (59%), Gaps = 8/249 (3%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTW----IVRTFGIFTILSIAPILL 56
           +I  C   +      +  A +     ++I    S         +    + T++S+AP LL
Sbjct: 5   IILACLLLVLFSFISVTAASAEPIPNIDIQVGNSDKGQPGATSLSIILLITVISVAPALL 64

Query: 57  IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
           +++T F R +IV   +RT +G   +PPN V++ LALF+T ++M+PT     E  +QP + 
Sbjct: 65  VLMTSFTRIVIVLGFVRTSLGTQQMPPNQVLVGLALFLTLFIMAPTFSAMNETALQPYLK 124

Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
             IT++ A+ + + P   FM ++TREKDL LFM                 I   +++P++
Sbjct: 125 GDITQSQALDKASVPIKTFMFSHTREKDLLLFMKYTKMEKPK----NYQDIPLTVMVPAY 180

Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
            ISEL+ +F++GF+I +PFL+ID++V++ +MAMGMMMLPP  ISLPFK++ FVL+DGW L
Sbjct: 181 AISELKTAFQMGFMIFIPFLVIDIVVSSTLMAMGMMMLPPVMISLPFKILLFVLVDGWYL 240

Query: 237 LVENLVKSF 245
           +V++L+ SF
Sbjct: 241 VVKSLLLSF 249


>gi|312115243|ref|YP_004012839.1| flagellar biosynthetic protein FliP [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220372|gb|ADP71740.1| flagellar biosynthetic protein FliP [Rhodomicrobium vannielii ATCC
           17100]
          Length = 265

 Score =  205 bits (521), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 114/237 (48%), Positives = 162/237 (68%), Gaps = 11/237 (4%)

Query: 14  PELVFAKSSLHDVMNIPA-----DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIV 68
           P    A+ +      + +         S+ I++   + T+LS+AP +LIMVTCF RF+I 
Sbjct: 34  PSSAAAQQTGGQFGGLASLFPETADGTSSRIIQLVLVITVLSLAPGILIMVTCFTRFVIA 93

Query: 69  FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128
            S LR G+G+ S P N++++SLALFMT + MSPT D++ E G++P M+ +++E  A Q++
Sbjct: 94  LSFLRVGLGLPSTPANIILVSLALFMTAFTMSPTFDKAWETGVKPFMDKKLSEDAAFQKI 153

Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188
            +PF  FM  N R+KD+ LF  M+  +              R LIP+FMISELRR FEIG
Sbjct: 154 TDPFREFMMANVRQKDIDLFAGMSPQASAEGATA------LRTLIPAFMISELRRGFEIG 207

Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           FLI+LPFL+ID+I +T++MAMGMMM+ PT++SLPFKV+FF+LIDGW+LLV NLV+SF
Sbjct: 208 FLIMLPFLVIDLIASTVLMAMGMMMVSPTTVSLPFKVLFFILIDGWNLLVGNLVRSF 264


>gi|149908447|ref|ZP_01897110.1| flagellar biosynthesis protein [Moritella sp. PE36]
 gi|149808610|gb|EDM68545.1| flagellar biosynthesis protein [Moritella sp. PE36]
          Length = 248

 Score =  205 bits (521), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 90/220 (40%), Positives = 137/220 (62%), Gaps = 5/220 (2%)

Query: 26  VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
           V+         +  ++   + T LS  P  LIM+T F R IIV SILR  +G+   P N 
Sbjct: 32  VITNNDGSQEYSVSLQILAMMTALSFLPAALIMMTSFTRIIIVLSILRQALGLQQSPSNQ 91

Query: 86  VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145
           V++ + LF++F++MSP  DR  +  +QP ++ ++T   A ++   P   FM   TR  DL
Sbjct: 92  VLVGITLFLSFFIMSPVFDRINDNALQPYLSEELTSMQAFEQAKLPMQQFMLAQTRVTDL 151

Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
             FM +A       +    + + +R+LIP+F+ SEL+ +F+IGF++ +PFLIID++VA+I
Sbjct: 152 DTFMRIA-----KVEADSPEEVPFRVLIPAFVTSELKTAFQIGFMVFIPFLIIDLVVASI 206

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +MAMGMMML P  +SLPFK++ FVL+DGWSL++  L  SF
Sbjct: 207 LMAMGMMMLSPMIVSLPFKLMLFVLVDGWSLILGTLANSF 246


>gi|302389676|ref|YP_003825497.1| flagellar biosynthetic protein FliP [Thermosediminibacter oceani
           DSM 16646]
 gi|302200304|gb|ADL07874.1| flagellar biosynthetic protein FliP [Thermosediminibacter oceani
           DSM 16646]
          Length = 254

 Score =  205 bits (521), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 104/246 (42%), Positives = 156/246 (63%), Gaps = 7/246 (2%)

Query: 4   YCFFALFLVTPELVFAKSSLH----DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           +    + L  P    A         D +    +   +   ++   I TIL++AP +LIM+
Sbjct: 11  FLAAVILLSIPITALADPEPPIPMLDFVRSARNPQETALSLQVLLILTILTLAPSILIMM 70

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R +IVFS +R+G+G   +PPN V+I LALF+TF+VM+P  D   +  IQP M  +I
Sbjct: 71  TSFIRIVIVFSFVRSGLGTQQIPPNQVLIGLALFITFFVMAPVFDDINKNAIQPYMREEI 130

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           T   A+Q   +P   FM   TREKDL+LF+  A   ++   +   D +   +LIP+F+IS
Sbjct: 131 TTQEALQLAQKPLRDFMFRQTREKDLALFLYHAKLQNQ---VRTLDDVPTYVLIPAFIIS 187

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+ +F++GF+I +PFL+IDMIVA+ +M+MGM+MLPP  ISLPFK++ FV++DGW+L+V 
Sbjct: 188 ELKTAFQMGFIIFVPFLVIDMIVASTLMSMGMLMLPPVMISLPFKILLFVMVDGWNLVVS 247

Query: 240 NLVKSF 245
           +L+ SF
Sbjct: 248 SLLSSF 253


>gi|294500924|ref|YP_003564624.1| flagellar biosynthetic protein FliP [Bacillus megaterium QM B1551]
 gi|294350861|gb|ADE71190.1| flagellar biosynthetic protein FliP [Bacillus megaterium QM B1551]
          Length = 222

 Score =  205 bits (521), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 96/209 (45%), Positives = 148/209 (70%), Gaps = 4/209 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  V+   + T+ S+AP +LIM+TCF R +IV S +RT +G   +PPN +++ L+LF+TF
Sbjct: 17  STSVQLLLLLTVFSVAPGILIMMTCFTRIVIVLSFVRTSLGTQQMPPNQILVGLSLFLTF 76

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           ++M+PT  +  E  +QPL+  +IT   A ++ AEP   FM  +TR+KDL+LF++ A    
Sbjct: 77  FIMAPTFSQVNEQALQPLLKEKITLNQAYEKAAEPMKEFMSAHTRQKDLALFLEYADIDR 136

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
                +    I    L+P++ ISEL+ +F+IGF+I +PFLIIDMI+A+++M+MGMMMLPP
Sbjct: 137 P----SSVQDIPLTALVPAYAISELKTAFQIGFMIFIPFLIIDMIIASVLMSMGMMMLPP 192

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             ISLPFK++ FVL+DGW+L+V++L+ SF
Sbjct: 193 VMISLPFKILLFVLVDGWNLVVKSLLISF 221


>gi|254292926|ref|YP_003058949.1| flagellar biosynthetic protein FliP [Hirschia baltica ATCC 49814]
 gi|254041457|gb|ACT58252.1| flagellar biosynthetic protein FliP [Hirschia baltica ATCC 49814]
          Length = 255

 Score =  205 bits (521), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 106/230 (46%), Positives = 157/230 (68%), Gaps = 4/230 (1%)

Query: 17  VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
             A  +     ++     +++ IV   G+ TILS+AP +L+M T F R ++V S+LRT M
Sbjct: 25  APAGIAQEFNFDLGTGAGMTSGIVEMLGVITILSLAPSILVMTTSFVRIVVVLSLLRTAM 84

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G+   PPN VIISL+LF+T +VM+PT + + + G++P M   I    A+ R A P   FM
Sbjct: 85  GLQQAPPNAVIISLSLFLTAFVMAPTFEAAYKEGVEPFMAESIGLEDALPRAAAPIKTFM 144

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
             + ++ DL+LFM MA+       +   +   +++L P+FMISEL+R+FEIGF+I LPFL
Sbjct: 145 AKHVQDDDLALFMGMANI----ETLESAEAAPFQVLAPAFMISELKRAFEIGFMIFLPFL 200

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +ID++VA+I+M+MGMMMLPP +IS+PFK+IFFVL+DGW LL  +LV+SF+
Sbjct: 201 VIDLVVASILMSMGMMMLPPVTISMPFKLIFFVLVDGWRLLAGSLVESFV 250


>gi|295706270|ref|YP_003599345.1| flagellar biosynthetic protein FliP [Bacillus megaterium DSM 319]
 gi|294803929|gb|ADF40995.1| flagellar biosynthetic protein FliP [Bacillus megaterium DSM 319]
          Length = 222

 Score =  205 bits (521), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 96/209 (45%), Positives = 148/209 (70%), Gaps = 4/209 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  V+   + T+ S+AP +LIM+TCF R +IV S +RT +G   +PPN +++ L+LF+TF
Sbjct: 17  STSVQLLLLLTVFSVAPGILIMMTCFTRIVIVLSFVRTSLGTQQMPPNQILVGLSLFLTF 76

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           ++M+PT  +  E  +QPL+  +IT   A ++ AEP   FM  +TR+KDL+LF++ A    
Sbjct: 77  FIMAPTFSQVNEQALQPLLKEKITLNQAYEKAAEPMKEFMSAHTRQKDLALFLEYADIDK 136

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
                +    I    L+P++ ISEL+ +F+IGF+I +PFLIIDMI+A+++M+MGMMMLPP
Sbjct: 137 P----SSVQDIPLTALVPAYAISELKTAFQIGFMIFIPFLIIDMIIASVLMSMGMMMLPP 192

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             ISLPFK++ FVL+DGW+L+V++L+ SF
Sbjct: 193 VMISLPFKILLFVLVDGWNLVVKSLLISF 221


>gi|226941268|ref|YP_002796342.1| flagellar biosynthesis protein FliP [Laribacter hongkongensis
           HLHK9]
 gi|226716195|gb|ACO75333.1| FliP [Laribacter hongkongensis HLHK9]
          Length = 251

 Score =  204 bits (520), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 96/249 (38%), Positives = 154/249 (61%), Gaps = 10/249 (4%)

Query: 3   RYCFFALFLVTPEL----VFAKSSLHDVMNIPADLSIS--TWIVRTFGIFTILSIAPILL 56
           R+ F   +L    L      A  ++  +   PA  + +  +  +      T L+  P LL
Sbjct: 4   RFLFALPWLAMGGLLVADAAAAPNIPFMNASPAGGAGTQYSLSLEMLLFLTSLTFIPALL 63

Query: 57  IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
           +M+T F R +IV S+LR  +G+   PPN VI+ L+LF+T +VM+P  D++      P  +
Sbjct: 64  LMMTAFTRIVIVLSLLRQAIGLMQSPPNQVIVGLSLFLTLFVMAPVFDQAYREAWLPYSD 123

Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
           +Q+    A ++  +PF  FM   TREKDL+ F+++A  +   T       +  + LIP+F
Sbjct: 124 SQMNFMQAAEKGVQPFKGFMLKQTREKDLAFFVEIAREAPPATPA----DVSLKTLIPAF 179

Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
           ++SEL+ +F+IGF++ +PFLIID++VA+++MAMGMMM+ P  ISLPFK++ FVL+DGW+L
Sbjct: 180 VVSELKTAFQIGFMVFIPFLIIDLVVASVLMAMGMMMVSPVIISLPFKLMLFVLVDGWTL 239

Query: 237 LVENLVKSF 245
           L+ +LV+SF
Sbjct: 240 LIGSLVQSF 248


>gi|327537629|gb|EGF24341.1| flagellar biosynthesis protein FliP [Rhodopirellula baltica WH47]
          Length = 316

 Score =  204 bits (520), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 88/229 (38%), Positives = 141/229 (61%), Gaps = 7/229 (3%)

Query: 21  SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
           +   D    P  L+ S   ++   + T+LS+AP +L+M TC+ R IIV  +LR  +G+ S
Sbjct: 87  AGGPDEWTSPEGLAGS---LQVMLLLTVLSLAPAILLMTTCYVRIIIVLGLLRQAIGLQS 143

Query: 81  VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ--ITETTAIQRVAEPFWVFMRN 138
           +PP+ V+ S+ALFMT +VM+P   R  +  I+P  + +  +T   A ++ A P   FM  
Sbjct: 144 LPPSQVMTSVALFMTLFVMTPVWTRVYDDAIKPYTDPEVEMTLEEAFEKGAIPIREFMAW 203

Query: 139 NTR--EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
             R    +  + +   +        +  D +  R+L+P+F++SEL+ SF +GF I LPFL
Sbjct: 204 QIREARNEDDVVLFYGYMDPDAVVPSTFDDVPLRVLLPAFILSELKTSFLMGFQIYLPFL 263

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           I+D++VA++ ++MGM+MLPP  I+LPFK++ FVL+DGW L+VE L+ SF
Sbjct: 264 IVDLVVASVTISMGMLMLPPAVIALPFKLLLFVLVDGWRLVVEMLMNSF 312


>gi|328958270|ref|YP_004375656.1| flagellar biosynthesis protein FliP [Carnobacterium sp. 17-4]
 gi|328674594|gb|AEB30640.1| flagellar biosynthesis protein FliP [Carnobacterium sp. 17-4]
          Length = 254

 Score =  204 bits (520), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 93/245 (37%), Positives = 149/245 (60%), Gaps = 8/245 (3%)

Query: 5   CFFALFLVTPELVFAKSSLHDVMNI----PADLSISTWIVRTFGIFTILSIAPILLIMVT 60
            F    L+ P++V A      +  +     ++   ++ +V+ F + T LS+AP  L++ T
Sbjct: 13  LFLMSSLLFPQVVTAAEITDGLSGLSEALGSETGETSQVVQLFLLTTALSLAPTFLVLTT 72

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
           CF R I+V S +R+ +G    PPNLV++ +ALF++ ++M P     +   I P +N +I+
Sbjct: 73  CFTRIIVVLSFVRSSLGTQQNPPNLVLMGIALFLSLFIMQPVYTDVMNEAITPYINEEIS 132

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A +    P   FM   TR++D+ LF+D++ ++           +   + IP+F+ISE
Sbjct: 133 GQAAFESAELPIKEFMYKQTRDEDIQLFLDISETAKP----ADVKELPLTVAIPAFIISE 188

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           LR +F IGFLI +PFL+ID++VA+I+M+MGM ML P  ISLPFK++ FVL+DGW L+VE+
Sbjct: 189 LRTAFSIGFLIFIPFLVIDIVVASILMSMGMFMLSPVMISLPFKLLLFVLVDGWYLVVES 248

Query: 241 LVKSF 245
           LV  F
Sbjct: 249 LVTGF 253


>gi|224826623|ref|ZP_03699724.1| flagellar biosynthetic protein FliP [Lutiella nitroferrum 2002]
 gi|224601224|gb|EEG07406.1| flagellar biosynthetic protein FliP [Lutiella nitroferrum 2002]
          Length = 248

 Score =  204 bits (520), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 100/249 (40%), Positives = 151/249 (60%), Gaps = 8/249 (3%)

Query: 1   MIRYCFFALFLVTPELVFA--KSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILL 56
           M R+  F+  L+          + L  + + PA     ++ +  +     T LS  P LL
Sbjct: 1   MKRFLVFSGLLLAGLFPLLADAAGLPLMNSTPAAGGGQSYSLSLQMLLFMTALSFIPALL 60

Query: 57  IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
           +M+T F R IIV S+LR  MG    PPN V++ LALF+T +VM PT D+       P   
Sbjct: 61  LMMTSFTRIIIVLSLLRQAMGTMQAPPNQVLVGLALFLTLFVMGPTFDQVYSKAWVPFSE 120

Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
           ++I     ++  ++P   FM   TREKDL+ F++++ S    T       +  + LIP+F
Sbjct: 121 DKIGFAQMLEEGSKPMREFMLKQTREKDLAFFIEVSQSPAPPTPA----EVSMKTLIPAF 176

Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
           +ISEL+ +F+IGF++ +PFLIID++VA+I+MAMGMMM+ P  ISLPFK++ FVL+DGW+L
Sbjct: 177 VISELKTAFQIGFMVFIPFLIIDLVVASILMAMGMMMVSPVIISLPFKLMLFVLVDGWTL 236

Query: 237 LVENLVKSF 245
           L+ +LV+SF
Sbjct: 237 LMGSLVRSF 245


>gi|261407968|ref|YP_003244209.1| flagellar biosynthetic protein FliP [Paenibacillus sp. Y412MC10]
 gi|329929296|ref|ZP_08283049.1| flagellar biosynthetic protein FliP [Paenibacillus sp. HGF5]
 gi|261284431|gb|ACX66402.1| flagellar biosynthetic protein FliP [Paenibacillus sp. Y412MC10]
 gi|328936665|gb|EGG33108.1| flagellar biosynthetic protein FliP [Paenibacillus sp. HGF5]
          Length = 250

 Score =  204 bits (520), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 94/242 (38%), Positives = 146/242 (60%), Gaps = 5/242 (2%)

Query: 5   CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSI-APILLIMVTCFP 63
            F    L+     FA    +  + I  +         +  +   +   AP +L+++T F 
Sbjct: 11  IFIMFGLLFSHTAFADPIPNIDIQIGNEGDAPGTSSLSLILLITILSIAPAILVLMTSFT 70

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
           R +IV   +RT +G    PPN V+I LALF+T +VM+PTL    E+ +QP +  +IT+  
Sbjct: 71  RIVIVLGFVRTSLGTQQTPPNQVLIGLALFLTLFVMAPTLSSMNEVALQPYLKGEITQAE 130

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
           A+ +  +P   FM  +TREKDL LFM+   +          + I   +L+P+F ISEL+ 
Sbjct: 131 ALDKAQDPMKKFMFAHTREKDLLLFMNYTGAEKPE----SYEDIPLTVLVPAFAISELKT 186

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
            F++GF+I +PFL+ID++VA+++MAMGMMMLPP  ISLPFK++ FVL+DGW L+V++++ 
Sbjct: 187 GFQMGFMIFIPFLVIDIVVASVLMAMGMMMLPPVMISLPFKILLFVLVDGWYLVVKSMLM 246

Query: 244 SF 245
           SF
Sbjct: 247 SF 248


>gi|188592196|ref|YP_001796794.1| flagellar biosynthesis protein flip [Cupriavidus taiwanensis LMG
           19424]
 gi|170938570|emb|CAP63557.1| fliP: flagellar biosynthesis protein. fliP/mopC/spaP family
           [Cupriavidus taiwanensis LMG 19424]
          Length = 274

 Score =  204 bits (520), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 96/217 (44%), Positives = 144/217 (66%), Gaps = 4/217 (1%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P    I +  V+T  + T LS  P  ++M+T F R IIV  +LR  +G  + PPN V++ 
Sbjct: 61  PGGGQIWSLPVQTLVLLTSLSFLPAAMLMMTGFTRVIIVLGLLRNALGTATSPPNQVLVG 120

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           L+LF+TF+VM+P  DR      +PL  N+++   A  + AEP   FM   TREKDL++F 
Sbjct: 121 LSLFLTFFVMAPVFDRVYNDAYKPLSENKLSLEAAAAKAAEPLKAFMLRQTREKDLAMFA 180

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
            MA +     ++   + +   IL+P+F+ SEL+ +F+IGF I +PFLIID++VA+++MAM
Sbjct: 181 QMAKAP----EMQGPEEVPLSILVPAFVTSELKTAFQIGFTIFIPFLIIDLVVASVLMAM 236

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF+
Sbjct: 237 GMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSFM 273


>gi|113969635|ref|YP_733428.1| flagellar biosynthesis protein FliP [Shewanella sp. MR-4]
 gi|113884319|gb|ABI38371.1| flagellar biosynthetic protein FliP [Shewanella sp. MR-4]
          Length = 248

 Score =  204 bits (520), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 90/247 (36%), Positives = 145/247 (58%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIM 58
           ++     +  L    +  A   L  V    A    + + V  +   + T LS  P ++IM
Sbjct: 5   ILTLIGVSTLLFAASVGAADGVLPAVTVKTAADGSTEYSVTMQILLLMTSLSFIPAMVIM 64

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R I+V SILR  +G+   P N V+I ++LFMTF++M+P  D+  + G++P ++ Q
Sbjct: 65  LTSFTRIIVVLSILRQAIGLQQTPSNQVLIGMSLFMTFFIMAPVFDKIYDQGVKPYIDEQ 124

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           +T   A  +  EP   FM    R  DL  F+D++       +I   +     +L+P+F+ 
Sbjct: 125 LTLQQAFDKGKEPLRAFMLGQVRTTDLKTFIDISG----YQNINSPEEAPMSVLVPAFIT 180

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P  +SLPFK++ FVL+DGW L++
Sbjct: 181 SELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWGLVM 240

Query: 239 ENLVKSF 245
             L  SF
Sbjct: 241 GTLANSF 247


>gi|114777577|ref|ZP_01452558.1| flagellar biosynthetic protein fliP [Mariprofundus ferrooxydans
           PV-1]
 gi|114552048|gb|EAU54565.1| flagellar biosynthetic protein fliP [Mariprofundus ferrooxydans
           PV-1]
          Length = 249

 Score =  204 bits (520), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 97/234 (41%), Positives = 145/234 (61%), Gaps = 6/234 (2%)

Query: 14  PELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
           P+LV A       +++        W   ++   + TIL++AP +L+M+T F R +IVF+ 
Sbjct: 18  PQLVQAADIPTLSLSLGNGDDPDAWFTGLKILAMLTILTLAPSILVMMTSFTRILIVFAF 77

Query: 72  LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
           LR  +G    PPN ++I L+LF+T ++M P   +     + P +N +I ++ A +R   P
Sbjct: 78  LRQALGTQQAPPNQILIGLSLFLTLFIMMPVWQKIDTTALTPYLNEEINQSVAFERGIAP 137

Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
              FM   TRE DL LF++ A          K + +   +LIPSF+ISELR +FEIGFLI
Sbjct: 138 LRDFMLKQTREDDLLLFLNAAKLKK----PAKAEDMPMHVLIPSFVISELRTAFEIGFLI 193

Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            +PF+++D+IVA+++M+MGMMMLPP  ISLP K+I FVL+DGW L+  NL+ SF
Sbjct: 194 YIPFIVLDLIVASVLMSMGMMMLPPVMISLPLKIILFVLVDGWHLITANLIASF 247


>gi|46204265|ref|ZP_00050254.2| COG1338: Flagellar biosynthesis pathway, component FliP
           [Magnetospirillum magnetotacticum MS-1]
          Length = 249

 Score =  204 bits (520), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 107/244 (43%), Positives = 158/244 (64%), Gaps = 8/244 (3%)

Query: 2   IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
           +         +      A+S   D+ +      +S   ++   + T+LS+AP  L++VT 
Sbjct: 12  LLIGALCASFLGSTPASAQSLTIDLSS----GGVSERALQLVALVTVLSLAPSALVVVTS 67

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F R ++VFSILR+ +G  S PPN V+++LALF+T +VM+P   ++   GI PL+  +I +
Sbjct: 68  FTRLVVVFSILRSALGTQSAPPNAVLVALALFLTAFVMAPVGRQAYTAGIAPLLAGEIQQ 127

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
             A +R   PF  FM  N REKDL LF+ MA +          + I   ++ P+FMISEL
Sbjct: 128 GQAFERTLAPFRAFMLKNVREKDLDLFLKMAKTPPP----ASPEEIGLEVVTPAFMISEL 183

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
            R+FEIGFL+ +PF+IID+ V++++MA+GMMM+PPTS+SLPFK+IFFVL+DGWSLLV +L
Sbjct: 184 SRAFEIGFLLFIPFMIIDLAVSSVLMALGMMMMPPTSVSLPFKLIFFVLVDGWSLLVGSL 243

Query: 242 VKSF 245
           V+SF
Sbjct: 244 VQSF 247


>gi|153834137|ref|ZP_01986804.1| flagellar biosynthesis protein [Vibrio harveyi HY01]
 gi|148869507|gb|EDL68505.1| flagellar biosynthesis protein [Vibrio harveyi HY01]
          Length = 280

 Score =  204 bits (519), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 91/209 (43%), Positives = 136/209 (65%), Gaps = 5/209 (2%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  ++   + T+L   P ++I++T F R ++V SILR  MG+   P N VII +ALF+TF
Sbjct: 75  SVTLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTF 134

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           +VMSP L+   +  IQP +N Q+T   A      P   FM   TR KDL  F++M+    
Sbjct: 135 FVMSPVLNEINDNAIQPYLNEQVTARQAFDAAQVPMKAFMLKQTRIKDLETFVNMSG--- 191

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
               +T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGMMML P
Sbjct: 192 --EQVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGMMMLSP 249

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 250 MIVSLPFKLMLFVLVDGWNLILSTLAGSF 278


>gi|309779459|ref|ZP_07674220.1| flagellar biosynthetic protein FliP [Ralstonia sp. 5_7_47FAA]
 gi|308921700|gb|EFP67336.1| flagellar biosynthetic protein FliP [Ralstonia sp. 5_7_47FAA]
          Length = 249

 Score =  204 bits (519), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 99/246 (40%), Positives = 147/246 (59%), Gaps = 5/246 (2%)

Query: 2   IRYCFFALFLVTPELVFAKSSLH-DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           +R       L     VFA++     ++   A     +  V+T    T L   P +++M++
Sbjct: 7   LRCLIALALLGAAPAVFAQAQPGLPLLTGTAGGQSYSLPVQTLVFLTSLGFLPAIILMMS 66

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R IIV S+LR  +G  + PPN V+I LALF+TF+VMSP LD+       PL +++IT
Sbjct: 67  SFTRIIIVLSLLRHALGTQTSPPNQVLIGLALFLTFFVMSPVLDKVYTDAYVPLRDSKIT 126

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A+   A P   FM   TRE DL+LF+ M +       I   +    R LIP+F+ SE
Sbjct: 127 VEQAMDTAATPLRQFMLKQTREPDLALFVKMGNMP----AIASPEQTPMRALIPAFVTSE 182

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +F+IGF I +PFL+ID++VA ++M+MGMMM+ P+  SLPFK++ FVL+DGW LL+ +
Sbjct: 183 LKSAFQIGFAIFIPFLVIDIVVAAVLMSMGMMMVTPSIFSLPFKIMLFVLVDGWHLLLGS 242

Query: 241 LVKSFI 246
           L +SF+
Sbjct: 243 LAQSFV 248


>gi|154686052|ref|YP_001421213.1| flagellar biosynthesis protein FliP [Bacillus amyloliquefaciens
           FZB42]
 gi|154351903|gb|ABS73982.1| FliP [Bacillus amyloliquefaciens FZB42]
          Length = 221

 Score =  204 bits (519), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 92/209 (44%), Positives = 144/209 (68%), Gaps = 4/209 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  V+   + T+ S+AP +LI++TCF R +IV S +RT +   ++PPN V+I LALF+TF
Sbjct: 17  SSTVKLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATQNMPPNQVLIGLALFLTF 76

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           ++M+PT     +  + PLM+N+I+   A  +  +P   +M  +TR+KDL+LFM+ A    
Sbjct: 77  FIMAPTFSEINKEALTPLMDNKISLDEAYTKAEKPIKEYMSKHTRQKDLALFMNYAKMKK 136

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
                     I    ++P++ ISEL+ +F++GF+I +PFLIIDM+VA+++M+MGMMMLPP
Sbjct: 137 PE----SIQDIPLTTMVPAYAISELKTAFQMGFMIFIPFLIIDMVVASVLMSMGMMMLPP 192

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             ISLPFK++ FVL+DGW L+V++L+ SF
Sbjct: 193 VMISLPFKILLFVLVDGWYLIVKSLLDSF 221


>gi|261252332|ref|ZP_05944905.1| flagellar biosynthesis protein FliP [Vibrio orientalis CIP 102891]
 gi|260935723|gb|EEX91712.1| flagellar biosynthesis protein FliP [Vibrio orientalis CIP 102891]
          Length = 275

 Score =  204 bits (519), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 89/219 (40%), Positives = 139/219 (63%), Gaps = 5/219 (2%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
              P      +  ++   + T+L   P ++I++T F R ++V SILR  MG+   P N V
Sbjct: 60  TTNPDGSEDYSVNLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 119

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           II +A+F+TF++MSP L++  +  IQP +N QI+   A      P   FM   TR KDL 
Sbjct: 120 IIGIAIFLTFFIMSPVLNKINDDAIQPYINEQISARQAFDLAQIPMKDFMLKQTRVKDLE 179

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
            F++++ S+      T  + +   +LIP+F+ SEL+ +F+IGF++ LPFL+ID++VA+++
Sbjct: 180 TFVNISGST-----ATAPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLVIDLVVASVL 234

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MAMGMMML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 235 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 273


>gi|299531251|ref|ZP_07044661.1| flagellar biosynthesis protein FliP [Comamonas testosteroni S44]
 gi|298720658|gb|EFI61605.1| flagellar biosynthesis protein FliP [Comamonas testosteroni S44]
          Length = 249

 Score =  204 bits (519), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 94/247 (38%), Positives = 150/247 (60%), Gaps = 7/247 (2%)

Query: 2   IRYCFFALFLVTPELVFAK---SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIM 58
           +     A+ L  P +  A+   +SL  ++   A  +  +  ++T   FT LS  P +L++
Sbjct: 5   VSRAAAAVLLAMPLMAAAQGAPASLPLLVGQGAGGTSYSVPIQTLLFFTALSFLPAILLL 64

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R +IV S+LR  +G  S PPN V+I L+LF+T +VM PTLD+  +    P   N 
Sbjct: 65  MTGFTRIVIVLSLLRQALGTQSAPPNQVVIGLSLFLTMFVMGPTLDKVYQDAYLPYTQNS 124

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   A+++   P   FM   TR+ D +LF  +A      T     +    R+L+P+F+ 
Sbjct: 125 ISFEQAMEKAEAPMRGFMLKQTRQSDFALFKRLAKLDANVT----AETAPLRVLVPAFVT 180

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF+I +PFL+IDM+V++I+M++GMMML P  ++LPFK++ FVL DGW+L++
Sbjct: 181 SELKTAFQIGFMIFIPFLVIDMVVSSILMSLGMMMLSPVLVALPFKLMLFVLADGWNLII 240

Query: 239 ENLVKSF 245
            +L  SF
Sbjct: 241 GSLAASF 247


>gi|209545574|ref|YP_002277803.1| flagellar biosynthesis protein FliP [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533251|gb|ACI53188.1| flagellar biosynthetic protein FliP [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 266

 Score =  204 bits (519), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 103/238 (43%), Positives = 155/238 (65%), Gaps = 4/238 (1%)

Query: 8   ALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67
           A+    P L  A+S   D+     D   ++ +V+   + TILS+AP LL+MVT F R I+
Sbjct: 31  AVLAGMPTLAHAQSLSLDLGKGMGDAGTTSRLVQLTALITILSLAPSLLVMVTAFTRIIV 90

Query: 68  VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
           V S+LR  +G    PPN V+I LALF+TF+VM P   +S + GI P+M+ +++E   +  
Sbjct: 91  VLSLLRGAIGAQGAPPNTVLIGLALFLTFFVMQPVFQQSWDHGIVPMMDGRVSEMEGLTA 150

Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
            AEPF  FM  N R  D++ F+ +A+     T         +R+++P+FMI EL R FE+
Sbjct: 151 AAEPFRTFMLANARPADITTFLHLANVPPPATPAETP----WRVIMPAFMIGELSRGFEM 206

Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GFL+ LPFL+ID++ ++++M++GMMMLPP +ISLPFK+IFFV++DGW ++   LV+SF
Sbjct: 207 GFLLYLPFLVIDIVTSSVLMSLGMMMLPPATISLPFKLIFFVMVDGWQMVAGGLVRSF 264


>gi|298736381|ref|YP_003728907.1| flagellar biosynthesis protein FliP [Helicobacter pylori B8]
 gi|298355571|emb|CBI66443.1| flagellar biosynthesis protein (FliP) [Helicobacter pylori B8]
          Length = 260

 Score =  204 bits (519), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 104/227 (45%), Positives = 158/227 (69%), Gaps = 4/227 (1%)

Query: 19  AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           A  S++  +N P+D       +    + T+L +AP L++++T F R I+VFS LRT +G 
Sbjct: 35  ALPSVNLSLNAPSDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGT 94

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
              PP  +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ A PF  FM  
Sbjct: 95  QQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLK 154

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
           NTREKDL+LF  + +  +  T     D +   +LIP+FMISEL+ +F+IGFL+ LPFL+I
Sbjct: 155 NTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVI 210

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           DM++++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LL ENLV SF
Sbjct: 211 DMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 257


>gi|145298356|ref|YP_001141197.1| flagellar biosynthesis protein FliP [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851128|gb|ABO89449.1| Flagellar biosynthesis protein FliP [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 249

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 94/246 (38%), Positives = 149/246 (60%), Gaps = 7/246 (2%)

Query: 2   IRYCFFALFLVTPELVFAKSSLHDVM--NIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           +     +  ++   L  A+  +  V    +       +  ++   + T LS  P ++IM+
Sbjct: 3   LLVGLLSTLVLFSPLALAQDGMSAVTIKTLADGSQEYSLTLQVLALMTALSFLPAVVIMM 62

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R IIV  ILR  +G+   P N V+I +ALFM+F++MSP LDR  +  +QP +   I
Sbjct: 63  TSFTRIIIVLGILRQAIGLQQSPSNQVLIGIALFMSFFIMSPVLDRINDEALQPYLAETI 122

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
               A+++   P   FM + TR KDL+ FM++A        + K   +  R+LIP+F+ S
Sbjct: 123 QAREALEKAELPIHQFMLSQTRIKDLNTFMEIADV-----QVDKPAEVPLRVLIPAFVTS 177

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+ +F+IGF++ LPFL+ID++VA+I+MAMGMMML P  +SLPFK++ FV++DGW+L++ 
Sbjct: 178 ELKTAFQIGFMLFLPFLVIDLVVASILMAMGMMMLSPMLVSLPFKLMLFVMVDGWNLILG 237

Query: 240 NLVKSF 245
           +L  SF
Sbjct: 238 SLANSF 243


>gi|260893864|ref|YP_003239961.1| flagellar biosynthetic protein FliP [Ammonifex degensii KC4]
 gi|260866005|gb|ACX53111.1| flagellar biosynthetic protein FliP [Ammonifex degensii KC4]
          Length = 223

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 95/207 (45%), Positives = 143/207 (69%), Gaps = 4/207 (1%)

Query: 39  IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
            V+   + T+LS+ P +LI++T F R +IV S+LR+ +G    PPN V++ LALF+T ++
Sbjct: 20  AVKILLLLTVLSLVPAILILMTSFTRIVIVLSLLRSALGTHQAPPNQVLVGLALFLTVFI 79

Query: 99  MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
           M+P  +R  +  I+P + NQIT   A  R   P   FM    REKDL+LF+++AH     
Sbjct: 80  MAPVYERINQEAIRPYLANQITRQEAQVRGLRPLKEFMLRQVREKDLALFVNLAHLPQP- 138

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
                 + +  R++IP+F+ISEL+ +F +GFL+ LPFL+IDM+VA+++M+MGM MLPP  
Sbjct: 139 ---VNKEELPLRVIIPAFLISELKTAFAMGFLLYLPFLVIDMVVASVLMSMGMFMLPPVM 195

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ISLPFK++ FVL+DGW L+V++LV+SF
Sbjct: 196 ISLPFKLLLFVLVDGWYLVVKSLVESF 222


>gi|157376188|ref|YP_001474788.1| flagellar biosynthesis protein FliP [Shewanella sediminis HAW-EB3]
 gi|157318562|gb|ABV37660.1| Triacylglycerol lipase [Shewanella sediminis HAW-EB3]
          Length = 248

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 92/244 (37%), Positives = 144/244 (59%), Gaps = 6/244 (2%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTC 61
           +  F+L L++PE       L  V         + + V  +   + T LS  P ++IM+T 
Sbjct: 7   FIAFSLLLISPEAFSQGGVLPAVTVTTGPQGETQYSVTMQILLLMTSLSFLPAMVIMLTS 66

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F R I+V SILR  +G+   P N V+I ++LF+TF++MSP  D+  +  ++P M   +  
Sbjct: 67  FTRIIVVLSILRQAIGLQQAPSNQVLIGMSLFLTFFIMSPVFDKVYDDAVKPYMEESMGI 126

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
             A  +  EP   FM   TR  DL  F+ ++       +I   +     ++IPSF+ SEL
Sbjct: 127 EEAFNKGKEPIKTFMLAQTRVTDLDTFIQISG----YQNINSPEEAPMSVIIPSFITSEL 182

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
           + +F+IGF++ +PFL++D++VA+I+MAMGMMML P  +SLPFK++ FVL+DGWSL++  L
Sbjct: 183 KTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVMGTL 242

Query: 242 VKSF 245
             SF
Sbjct: 243 ANSF 246


>gi|56964019|ref|YP_175750.1| flagellar biosynthesis protein FliP [Bacillus clausii KSM-K16]
 gi|56910262|dbj|BAD64789.1| flagellar biosynthetic protein FliP [Bacillus clausii KSM-K16]
          Length = 227

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 95/215 (44%), Positives = 137/215 (63%), Gaps = 4/215 (1%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
            +       V+   + T+L+IAP +LIM+TCF R IIV + +R G+   S PPN V+I L
Sbjct: 16  TNGETMATTVQIALLLTVLTIAPGILIMMTCFTRIIIVLAFVRQGLATQSTPPNQVLIGL 75

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           ALF+T ++M+P +    E    PL + + +   A +    P   FM  +TREKDL+LFM 
Sbjct: 76  ALFITAFIMAPVIQEVYETAYVPLADGEYSSEEAFEAAVVPIKEFMSAHTREKDLALFMG 135

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
                         D +    L+P+F ISEL+ +F+IGFLI +PFL+IDMIVA+++M+MG
Sbjct: 136 YGGYDRP----ASIDDVPLTALVPAFAISELKTAFQIGFLIFIPFLVIDMIVASVLMSMG 191

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMMLPP  I+LPFKV+ FVL+DGW L+V++L+ S+
Sbjct: 192 MMMLPPVMIALPFKVLLFVLVDGWYLVVQSLLISY 226


>gi|89072284|ref|ZP_01158863.1| putative flagellar assembly protein [Photobacterium sp. SKA34]
 gi|89051816|gb|EAR57268.1| putative flagellar assembly protein [Photobacterium sp. SKA34]
          Length = 263

 Score =  204 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 86/233 (36%), Positives = 129/233 (55%), Gaps = 6/233 (2%)

Query: 15  ELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72
                 +S  + + +  D     + V  +   + T LS  P  L+M T F R IIV SIL
Sbjct: 34  SSAAEANSGLNFLTVTDDQGEQEYSVKLQILLLMTALSFIPAFLLMATSFTRIIIVLSIL 93

Query: 73  RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132
           R  +G+   PPN +++ +AL +T  +M P      +    P  N  IT   A     +P 
Sbjct: 94  RQALGLQQSPPNRILVGIALSLTILIMRPVWTDVYDNAFVPYDNGDITLLQAFDTAEKPV 153

Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192
             FM   T +  L   M +A+           ++I + I++P+F+ISEL+ +F+IGF++ 
Sbjct: 154 RDFMLKQTHQSALEQMMRIANEPLD----QDVENISFAIVLPAFVISELKTAFQIGFMLF 209

Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +PFLIID++VA+++MAMGMMML P  ISLPFK+I FVL DGW++ V +L  SF
Sbjct: 210 IPFLIIDLVVASVLMAMGMMMLSPLIISLPFKLIVFVLADGWTMTVGSLSASF 262


>gi|23099026|ref|NP_692492.1| flagellar biosynthesis protein FliP [Oceanobacillus iheyensis
           HTE831]
 gi|22777254|dbj|BAC13527.1| flagellar protein required for flagellar formation [Oceanobacillus
           iheyensis HTE831]
          Length = 221

 Score =  204 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 97/217 (44%), Positives = 142/217 (65%), Gaps = 4/217 (1%)

Query: 29  IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
             +D +  +  V+   + TI S+AP +LI++T F R IIV S +RT +    +PPN V+I
Sbjct: 9   SSSDPTNISTSVKLLLLLTIFSLAPGILILMTSFTRIIIVLSFVRTSLATQQMPPNQVLI 68

Query: 89  SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
            +ALFM+F++M+PT     E G+ PL N +IT   A +  + P   FM  +TR+KDL LF
Sbjct: 69  GIALFMSFFIMAPTFTEVYEEGLGPLFNEEITLDEAYENASIPLKEFMAQHTRQKDLELF 128

Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
           ++   +    T     + I    L+P+F ISEL+ +F++GFLI +PFLIIDM VA+I+M+
Sbjct: 129 LNYTQADPPET----IEDIPLTTLVPAFAISELKTAFQMGFLIFIPFLIIDMAVASILMS 184

Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MGMMMLPP  ISLPFK++ FVL+DGW L+ ++L+  F
Sbjct: 185 MGMMMLPPVMISLPFKILLFVLVDGWYLITQSLLGGF 221


>gi|118474799|ref|YP_891929.1| flagellar biosynthesis protein FliP [Campylobacter fetus subsp.
           fetus 82-40]
 gi|118414025|gb|ABK82445.1| flagellar biosynthetic protein FliP [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 244

 Score =  204 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 105/242 (43%), Positives = 149/242 (61%), Gaps = 4/242 (1%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
             FF              +++  ++ P         +    + T+L++AP L+ ++T F 
Sbjct: 6   LIFFGFVTGFAAETVTIPTINLNLSAPDTPQQLVTSLNVLIVLTLLALAPSLIFVMTSFL 65

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
           R IIVFS LR  MG   +PP  V+ISLAL +TF++M P   +S   GI+P +  +I    
Sbjct: 66  RLIIVFSFLRQAMGTQQMPPTNVLISLALILTFFIMEPVAKQSYNEGIKPYLEEKIGYQD 125

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
           A    A+PF  FM  NTREKDL+LF  +    + NT     D I + I  P+F+ISEL+ 
Sbjct: 126 AFALGAKPFKEFMVRNTREKDLALFYRIRALPNPNT----VDDIPFTIAAPAFIISELKT 181

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
           +FEIGFL+ LPFL+IDM+V++++M+MGMMMLPP  ISLPFK++ FVL+DGW+LL+ NLV 
Sbjct: 182 AFEIGFLLYLPFLVIDMVVSSVLMSMGMMMLPPVMISLPFKLLIFVLVDGWNLLIGNLVA 241

Query: 244 SF 245
           SF
Sbjct: 242 SF 243


>gi|104782808|ref|YP_609306.1| flagellar biosynthesis protein FliP [Pseudomonas entomophila L48]
 gi|95111795|emb|CAK16519.1| flagellar biosynthetic protein FliP [Pseudomonas entomophila L48]
          Length = 251

 Score =  204 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 96/220 (43%), Positives = 139/220 (63%), Gaps = 4/220 (1%)

Query: 26  VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
           + N        +  ++   I T LS  P  +I++T F R IIVFSILR  +G+   P N 
Sbjct: 33  LSNGADGQQEYSVSLQILLIMTALSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQ 92

Query: 86  VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145
           V+  +ALF+T ++M+P  +R  +  IQP +  Q+T   AI +   P   FM   TR+ DL
Sbjct: 93  VLTGMALFLTMFIMAPVFERVNKDAIQPYLAEQMTAQQAIDKAQGPLKDFMLAQTRQSDL 152

Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
            LFM ++    + TDI   D +   IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA++
Sbjct: 153 DLFMRLS----KRTDIAGPDQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASV 208

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +MAMGMMML P  ISLPFK++ FVL+DGW+L++  L  SF
Sbjct: 209 LMAMGMMMLSPLIISLPFKIMLFVLVDGWALIMGTLAGSF 248


>gi|323700135|ref|ZP_08112047.1| flagellar biosynthetic protein FliP [Desulfovibrio sp. ND132]
 gi|323460067|gb|EGB15932.1| flagellar biosynthetic protein FliP [Desulfovibrio desulfuricans
           ND132]
          Length = 252

 Score =  204 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 97/215 (45%), Positives = 135/215 (62%), Gaps = 4/215 (1%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
           AD    + ++    + TILSIAP +L+ +T F R IIVF  +R  MG   +PPN ++ +L
Sbjct: 41  ADPQEVSTLLEILFLLTILSIAPAILLTMTSFTRIIIVFHFIRQAMGTQQMPPNQILAAL 100

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           A+FMT  +M P      E  +QP MN  I  T A+ R   P   FM  +TREKDLS+F  
Sbjct: 101 AIFMTMVIMYPVGKTINETALQPYMNETINFTEALTRAQVPIRQFMFKHTREKDLSIFYS 160

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           +             + +   +L+ ++ ISEL+  F IGFLI +PFLI+DM+VA+I++AMG
Sbjct: 161 ITKEPRPE----NKEEVPTIMLVAAYTISELKTGFTIGFLIYIPFLILDMVVASILLAMG 216

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMMLPP  ISLPFK++ F+LIDGW+LLV +LV +F
Sbjct: 217 MMMLPPVMISLPFKILLFILIDGWNLLVGSLVNTF 251


>gi|302878289|ref|YP_003846853.1| flagellar biosynthetic protein FliP [Gallionella capsiferriformans
           ES-2]
 gi|302581078|gb|ADL55089.1| flagellar biosynthetic protein FliP [Gallionella capsiferriformans
           ES-2]
          Length = 249

 Score =  204 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 93/230 (40%), Positives = 150/230 (65%), Gaps = 6/230 (2%)

Query: 18  FAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTG 75
            A  ++  + +  A     ++ +  +T  I T LS  P +L+M+T F R IIV S+LR+ 
Sbjct: 22  AADLAVPAITSKAAAGGGQSYSLSLQTLLILTSLSFLPAMLLMMTSFTRIIIVLSMLRSA 81

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVF 135
           +G  + PPN V+I L+LF+TF++MSP  D+       P   N+I    A+++   P   F
Sbjct: 82  LGTQASPPNQVLIGLSLFLTFFIMSPVFDKIYTDAYLPYSENRIELQEAVEKGVIPLKTF 141

Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195
           M   TR+ DL+LF+ +++S     ++   + +  R+L+P+++ SEL+ +F+IGF++ +PF
Sbjct: 142 MLRQTRQADLALFVKISNS----DELQSAEEVPMRLLVPAYVTSELKTAFQIGFVVFIPF 197

Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LIIDM+VA+I+M+MGMMML P+ ISLPFK++ FVL DGW+LL+ +L +SF
Sbjct: 198 LIIDMVVASILMSMGMMMLSPSIISLPFKIMLFVLADGWNLLIGSLAQSF 247


>gi|217033150|ref|ZP_03438609.1| hypothetical protein HPB128_194g3 [Helicobacter pylori B128]
 gi|216945122|gb|EEC23821.1| hypothetical protein HPB128_194g3 [Helicobacter pylori B128]
          Length = 231

 Score =  204 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 104/227 (45%), Positives = 158/227 (69%), Gaps = 4/227 (1%)

Query: 19  AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           A  S++  +N P+D       +    + T+L +AP L++++T F R I+VFS LRT +G 
Sbjct: 6   ALPSVNLSLNAPSDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGT 65

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
              PP  +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ A PF  FM  
Sbjct: 66  QQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLK 125

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
           NTREKDL+LF  + +  +  T     D +   +LIP+FMISEL+ +F+IGFL+ LPFL+I
Sbjct: 126 NTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVI 181

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           DM++++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LL ENLV SF
Sbjct: 182 DMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 228


>gi|188527470|ref|YP_001910157.1| flagellar biosynthesis protein FliP [Helicobacter pylori Shi470]
 gi|188143710|gb|ACD48127.1| flagellar biosynthesis protein FliP [Helicobacter pylori Shi470]
          Length = 248

 Score =  204 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 104/227 (45%), Positives = 157/227 (69%), Gaps = 4/227 (1%)

Query: 19  AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           A  S++  +N P D       +    + T+L +AP L++++T F R I+VFS LRT +G 
Sbjct: 23  ALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGT 82

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
              PP  +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ A PF  FM  
Sbjct: 83  QQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLK 142

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
           NTREKDL+LF  + +  +  T     D +   +LIP+FMISEL+ +F+IGFL+ LPFL+I
Sbjct: 143 NTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVI 198

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           DM++++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LL ENLV SF
Sbjct: 199 DMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 245


>gi|294508622|ref|YP_003572681.1| flagellar biosynthetic protein FliP [Salinibacter ruber M8]
 gi|294344951|emb|CBH25729.1| flagellar biosynthetic protein FliP [Salinibacter ruber M8]
          Length = 284

 Score =  204 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 90/206 (43%), Positives = 142/206 (68%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   + T+L++AP ++I++T F R ++VFSILR  +G+   PP  V+I L+LF++ ++M
Sbjct: 80  IQLLLLLTVLTLAPAIIILMTSFTRLVVVFSILRRALGLQRSPPRQVVIGLSLFLSLFIM 139

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P L+   +  ++P ++N+IT+  A  R + P   FM  +TR+KDL LFMDM        
Sbjct: 140 QPVLETVHQDALRPYLDNEITQQEAFDRASTPMKRFMLTHTRDKDLMLFMDMGEI----E 195

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                D     +++P+F+ISELR +F+IGF+I LPFLI+D++VA+I+M+MGMMMLPP  I
Sbjct: 196 SFEGPDEAPLYVVVPAFVISELRIAFQIGFMIFLPFLIVDLVVASILMSMGMMMLPPVMI 255

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLP K++ FVL DGW L+VE+L++ +
Sbjct: 256 SLPIKLLLFVLTDGWYLIVESLMQGY 281


>gi|308173598|ref|YP_003920303.1| flagellar export protein [Bacillus amyloliquefaciens DSM 7]
 gi|307606462|emb|CBI42833.1| component of the flagellar export machinery [Bacillus
           amyloliquefaciens DSM 7]
 gi|328553470|gb|AEB23962.1| flagellar biosynthesis protein FliP [Bacillus amyloliquefaciens
           TA208]
 gi|328911739|gb|AEB63335.1| component of the flagellar export machinery [Bacillus
           amyloliquefaciens LL3]
          Length = 221

 Score =  204 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 92/209 (44%), Positives = 144/209 (68%), Gaps = 4/209 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  V+   + T+ S+AP +LI++TCF R +IV S +RT +   ++PPN V+I LALF+TF
Sbjct: 17  SSTVKLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATQNMPPNQVLIGLALFLTF 76

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           ++M+PT     +  + PLM+N+I+   A  +  +P   +M  +TR+KDL+LFM+ A    
Sbjct: 77  FIMAPTFSEINKDALTPLMDNKISLDEAYTKAEKPIKEYMSKHTRQKDLALFMNYAKMKK 136

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
                     I    ++P++ ISEL+ +F++GF+I +PFLIIDM+VA+++M+MGMMMLPP
Sbjct: 137 PE----SIQDIPLTTMVPAYAISELKTAFQMGFMIFIPFLIIDMVVASVLMSMGMMMLPP 192

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             ISLPFK++ FVL+DGW L+V++L+ SF
Sbjct: 193 VMISLPFKILLFVLVDGWYLIVKSLLDSF 221


>gi|90422616|ref|YP_530986.1| flagellar biosynthesis protein FliP [Rhodopseudomonas palustris
           BisB18]
 gi|90104630|gb|ABD86667.1| flagellar biosynthetic protein FliP [Rhodopseudomonas palustris
           BisB18]
          Length = 248

 Score =  204 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 120/227 (52%), Positives = 164/227 (72%), Gaps = 2/227 (0%)

Query: 20  KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79
           +      +  P   S S  I++   + T+LS+AP LLIMVT F RF++  S LRTG+G+ 
Sbjct: 24  QMPDLSTLIPPGGGSASGRIIQMVALLTVLSLAPGLLIMVTSFTRFVVALSFLRTGLGLQ 83

Query: 80  SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139
           + P N+V+ISLALF+TFYVM+PT DR+   G+QPLM N+ITE  A  RV EPF  FM  +
Sbjct: 84  TTPANIVMISLALFLTFYVMAPTFDRAWRDGLQPLMQNEITEKEAYSRVTEPFREFMLAH 143

Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
            R+KDL  F  +A  S R     + + ++ R++IP+FM+SELRR+FEIGFLI++PFL+ID
Sbjct: 144 VRDKDLQTFESLAAESLRIRP--EGEKVDLRVIIPAFMVSELRRAFEIGFLIVMPFLVID 201

Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           M+VAT+ M+MGMMM+PPT  +LPFKV+FFVLIDGW+LL   LV+S++
Sbjct: 202 MVVATLTMSMGMMMMPPTVFALPFKVLFFVLIDGWNLLAVGLVRSYL 248


>gi|260776473|ref|ZP_05885368.1| flagellar biosynthesis protein FliP [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607696|gb|EEX33961.1| flagellar biosynthesis protein FliP [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 244

 Score =  204 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 92/219 (42%), Positives = 138/219 (63%), Gaps = 5/219 (2%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
              P      +  ++   + T+L   P ++I++T F R ++V SILR  MG+   P N V
Sbjct: 29  TTNPDGSEDYSVNLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 88

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           II +A+F+TF++MSP L+   +  IQP +N QIT   A      P   FM   TR KDL 
Sbjct: 89  IIGIAIFLTFFIMSPVLNEINDKAIQPYINEQITARQAFDVAQAPMKDFMLKQTRVKDLE 148

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
            F++++ S     D T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++
Sbjct: 149 TFVNISGS-----DATAPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 203

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MAMGMMML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 204 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 242


>gi|323496545|ref|ZP_08101599.1| flagellar biosynthesis protein FliP [Vibrio sinaloensis DSM 21326]
 gi|323318389|gb|EGA71346.1| flagellar biosynthesis protein FliP [Vibrio sinaloensis DSM 21326]
          Length = 291

 Score =  204 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 88/219 (40%), Positives = 139/219 (63%), Gaps = 5/219 (2%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
              P      +  ++   + T+L   P ++I++T F R ++V SILR  MG+   P N V
Sbjct: 76  TTNPDGSEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 135

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           II +A+F+TF++MSP L++  E  +QP +N QI+   A      P   FM   TR KDL 
Sbjct: 136 IIGIAIFLTFFIMSPVLNKINEAAVQPYINEQISAREAFDLAQAPMKDFMLKQTRVKDLE 195

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
            F++++ ++     +   + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++
Sbjct: 196 TFVNISGAT-----VNNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 250

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MAMGMMML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 251 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 289


>gi|254418891|ref|ZP_05032615.1| flagellar biosynthetic protein FliP [Brevundimonas sp. BAL3]
 gi|196185068|gb|EDX80044.1| flagellar biosynthetic protein FliP [Brevundimonas sp. BAL3]
          Length = 266

 Score =  204 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 94/219 (42%), Positives = 148/219 (67%), Gaps = 4/219 (1%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
           +++ +   ++  +V+  G+ T+LS+AP ++IM T F R ++V S+LRT +GM   PPN V
Sbjct: 45  IDLGSGAGLTQRVVQLVGLMTVLSLAPSIVIMTTSFVRIVVVLSLLRTALGMQQSPPNAV 104

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           ++SLALF++  VM+PT   + + GI+PL++ Q+    A    +EP   FM       DL+
Sbjct: 105 LVSLALFLSAIVMAPTWQDAYDSGIRPLLDQQMELPQAFDAASEPVKTFMLAQVDRGDLA 164

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
           LF  ++              +  R++ P+FMISEL+++FEIGFL+ +PFL+ID++VA+++
Sbjct: 165 LFTRLSRVEAP----ANLQELPLRVVTPAFMISELKKAFEIGFLLFVPFLVIDLVVASVL 220

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+MGMMMLPP  +SLPFK+IFFVL+DGW L+  +LV+SF
Sbjct: 221 MSMGMMMLPPVVVSLPFKLIFFVLVDGWRLVAGSLVESF 259


>gi|237750901|ref|ZP_04581381.1| flagellar biosynthesis protein FliP [Helicobacter bilis ATCC 43879]
 gi|229373346|gb|EEO23737.1| flagellar biosynthesis protein FliP [Helicobacter bilis ATCC 43879]
          Length = 275

 Score =  204 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 96/232 (41%), Positives = 145/232 (62%), Gaps = 8/232 (3%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           S+   +N P+  +     +    + T+L +AP L++M+T F R +IV   LRT +G    
Sbjct: 41  SVDLSINPPSTPTQLVTTLNIVVLLTLLILAPSLVLMMTSFTRILIVLGFLRTALGTQQS 100

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PP  V++SLA+ +TF++M P +  +  +GI+P M  +I    A +    PF  FM  NTR
Sbjct: 101 PPTQVLVSLAMILTFFIMEPVIKDAYNVGIKPYMEEKIGYEEAFEETMRPFKKFMLMNTR 160

Query: 142 EKDLSLFMDMAHSSHRNTDITKN--------DHIEYRILIPSFMISELRRSFEIGFLIIL 193
             D++LF  + +      D            D +   I++PSFMISEL+ +F+IGFL+ L
Sbjct: 161 HSDIALFYKIRNEEPPQMDNITTKEQFEALIDKVSLSIILPSFMISELKTAFQIGFLLYL 220

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           PFL+IDM++A+++MAMGMMMLPP  ISLPFK++ FVL+DG++LL+ NLV+SF
Sbjct: 221 PFLVIDMVIASVLMAMGMMMLPPVMISLPFKILIFVLVDGFNLLIWNLVRSF 272


>gi|313901464|ref|ZP_07834920.1| flagellar biosynthetic protein FliP [Thermaerobacter subterraneus
           DSM 13965]
 gi|313468270|gb|EFR63728.1| flagellar biosynthetic protein FliP [Thermaerobacter subterraneus
           DSM 13965]
          Length = 227

 Score =  204 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 84/194 (43%), Positives = 131/194 (67%), Gaps = 4/194 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP LL+M+T F R ++  S LR  +G    PPN V++ LALF+T +VM+P   +  +   
Sbjct: 34  APALLVMMTGFTRIVVALSFLRGALGTQQAPPNQVLVGLALFLTVFVMAPVWQQVYQDAW 93

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
            P  + +I +  A+QR  EP   FM   TRE+DL+LF++++        +   D +   +
Sbjct: 94  IPYRDGRIGQVEALQRAQEPVREFMFRYTRERDLALFLELSGRG----PVASPDQVPTYV 149

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           LIP+F ISEL+ +F+IGF++ +PFL+IDM+VA+ +M+MGM+M+PP  +SLPFK++ FVL+
Sbjct: 150 LIPAFAISELKTAFQIGFILYVPFLVIDMVVASTLMSMGMLMVPPMLVSLPFKILLFVLV 209

Query: 232 DGWSLLVENLVKSF 245
           DGW+L+V +L+ SF
Sbjct: 210 DGWNLVVRSLLASF 223


>gi|217033687|ref|ZP_03439114.1| hypothetical protein HP9810_5g29 [Helicobacter pylori 98-10]
 gi|216943876|gb|EEC23313.1| hypothetical protein HP9810_5g29 [Helicobacter pylori 98-10]
          Length = 231

 Score =  204 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 103/224 (45%), Positives = 156/224 (69%), Gaps = 4/224 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           S++  +N P D       +    + T+L +AP L++++T F R I+VFS LRT +G    
Sbjct: 9   SVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQT 68

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PP  +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ A PF  FM  NTR
Sbjct: 69  PPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLKNTR 128

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           EKDL+LF  + +  +  T     D +   +LIP+FMISEL+ +F+IGFL+ LPFL+IDM+
Sbjct: 129 EKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVIDMV 184

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LL ENLV SF
Sbjct: 185 ISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 228


>gi|212634377|ref|YP_002310902.1| flagellar biosynthesis protein FliP [Shewanella piezotolerans WP3]
 gi|212555861|gb|ACJ28315.1| Flagellar biosynthetic protein FliP [Shewanella piezotolerans WP3]
          Length = 249

 Score =  204 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 88/247 (35%), Positives = 146/247 (59%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIM 58
           ++ +   AL L++P ++     L  V         + + V  +   + T LS  P  +IM
Sbjct: 5   IVLFGGLALSLISPTVLAETGILPAVTVSTGADGSTQYSVTMQILLLMTALSFIPAAVIM 64

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R I+V SILR  +G+   P N ++I +++FMTF++MSP  D+  E  ++P +   
Sbjct: 65  LTSFTRIIVVLSILRQAIGLQQAPSNQILIGISMFMTFFIMSPVFDKIYEQAVKPYIEQG 124

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           +    A      P   FM + TR  DL  F++++       +I + +     ++IP+F+ 
Sbjct: 125 MPIQDAFNTGKGPLKDFMLSQTRLTDLDTFIEISG----YQNINEPEDAPMSVIIPAFIT 180

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P  +SLPFK++ FVL+DGWSL++
Sbjct: 181 SELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVM 240

Query: 239 ENLVKSF 245
             L  SF
Sbjct: 241 GTLANSF 247


>gi|158422252|ref|YP_001523544.1| flagellar biosynthetic FliP protein [Azorhizobium caulinodans ORS
           571]
 gi|158329141|dbj|BAF86626.1| flagellar biosynthetic FliP protein [Azorhizobium caulinodans ORS
           571]
          Length = 292

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 129/264 (48%), Positives = 171/264 (64%), Gaps = 30/264 (11%)

Query: 12  VTPELVFAKSSLHDVMNIP--------ADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
            +  L +A++ +     IP           ++S  I++   + T+LSIAP LLIMVT F 
Sbjct: 28  FSAGLAYAQNRVQGDTQIPSLDSLLGDNGGAVSGRIIQMVMVLTVLSIAPGLLIMVTSFT 87

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
           RF+I  S LR+G+G+ S P NLV+ISL+LFMTFYVM PT D++   G++PL   +ITE  
Sbjct: 88  RFVIALSFLRSGLGLSSTPANLVLISLSLFMTFYVMGPTFDKAWTEGVRPLTERKITEEE 147

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDM----------------------AHSSHRNTDI 161
           A  +++EPF  FM +  R KDL LF D+                      A S +R+ + 
Sbjct: 148 AFTKISEPFREFMLSQVRPKDLRLFADIAAATGRPSKNDPETAAQNNSAPATSPNRDQNA 207

Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
                IE RILIP+FMISELRR FEIGFLIILPFLIIDMIVAT+VM+MGMMM+ P +++L
Sbjct: 208 QPERQIELRILIPAFMISELRRGFEIGFLIILPFLIIDMIVATLVMSMGMMMMSPAALAL 267

Query: 222 PFKVIFFVLIDGWSLLVENLVKSF 245
           PFK++FFVLIDGW++LV  LV+SF
Sbjct: 268 PFKILFFVLIDGWNILVSGLVRSF 291


>gi|264676604|ref|YP_003276510.1| flagellar biosynthetic protein FliP [Comamonas testosteroni CNB-2]
 gi|262207116|gb|ACY31214.1| flagellar biosynthetic protein FliP [Comamonas testosteroni CNB-2]
          Length = 249

 Score =  203 bits (517), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 95/247 (38%), Positives = 150/247 (60%), Gaps = 7/247 (2%)

Query: 2   IRYCFFALFLVTPELVFAKS---SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIM 58
           +     A+ L  P +  A+S   SL  ++   A  +  +  ++T   FT LS  P +L++
Sbjct: 5   VSRAAAAVLLAMPLMAAAQSAPASLPLLVGQGAGGTSYSVPIQTLLFFTALSFLPAILLL 64

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R +IV S+LR  +G  S PPN V+I L+LF+T +VM PTLD+  +    P   N 
Sbjct: 65  MTGFTRIVIVLSLLRQALGTQSAPPNQVVIGLSLFLTMFVMGPTLDKVYQDAYLPYTQNS 124

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   A+++   P   FM   TR+ D +LF  +A      T     +    R+L+P+F+ 
Sbjct: 125 ISFEQAMEKAEAPMRGFMLKQTRQSDFALFKRLAKLDANVT----AETAPLRVLVPAFVT 180

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF+I +PFL+IDM+V++I+M++GMMML P  ++LPFK++ FVL DGW+L++
Sbjct: 181 SELKTAFQIGFMIFIPFLVIDMVVSSILMSLGMMMLSPVLVALPFKLMLFVLADGWNLII 240

Query: 239 ENLVKSF 245
            +L  SF
Sbjct: 241 GSLAASF 247


>gi|330826721|ref|YP_004390024.1| flagellar biosynthetic protein FliP [Alicycliphilus denitrificans
           K601]
 gi|329312093|gb|AEB86508.1| flagellar biosynthetic protein FliP [Alicycliphilus denitrificans
           K601]
          Length = 251

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 87/222 (39%), Positives = 137/222 (61%), Gaps = 4/222 (1%)

Query: 24  HDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPP 83
             V+   A  +  +  ++T   FT LS  P +L+M+T F R +IV S+LR  +G    PP
Sbjct: 32  PLVVGSGAGGTSYSVPIQTLLFFTALSFLPAVLLMMTGFTRIVIVLSLLRQAIGTQQAPP 91

Query: 84  NLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREK 143
           N V++ L+LF+T +VM PTLD+  +    P   N ++   A+ +   P   FM   TR+ 
Sbjct: 92  NQVVVGLSLFLTLFVMGPTLDKVYQEAYVPYTTNALSFEQALAKAEAPMRGFMLKQTRQS 151

Query: 144 DLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVA 203
           D +LF  +A      T     +    R+L+P+F+ SEL+ +F+IGF++ +PFLIIDM+V+
Sbjct: 152 DFALFARLAKLDEGVT----AETAPLRVLVPAFVTSELKTAFQIGFMVFIPFLIIDMVVS 207

Query: 204 TIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +++M++GMMML P  ++LPFK++ FVL DGW+LL+ +L  SF
Sbjct: 208 SVLMSLGMMMLSPVLVALPFKLMLFVLADGWNLLIGSLAASF 249


>gi|330502776|ref|YP_004379645.1| flagellar biosynthesis protein FliP [Pseudomonas mendocina NK-01]
 gi|328917062|gb|AEB57893.1| flagellar biosynthesis protein FliP [Pseudomonas mendocina NK-01]
          Length = 261

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 93/209 (44%), Positives = 138/209 (66%), Gaps = 4/209 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  ++   I T LS  P  ++++T F R IIVFSILR  +G+   P N +++ LALF+T 
Sbjct: 54  SVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILVGLALFLTM 113

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           ++M+P  DR     +QP +N +I    A+ R   P   FM   TRE DL+LF+ ++    
Sbjct: 114 FIMAPVFDRINTDALQPYLNEEIIAQEALTRAEGPIRDFMLAQTRESDLALFVRLS---- 169

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
           + TD+   + +   IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA+I+MAMGMMML P
Sbjct: 170 KRTDLAGVEDVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASILMAMGMMMLSP 229

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             ISLPFK++ FVL+DGW+L++  L  SF
Sbjct: 230 LIISLPFKIMLFVLVDGWALIMGTLAASF 258


>gi|153825580|ref|ZP_01978247.1| flagellar biosynthetic protein FliP [Vibrio cholerae MZO-2]
 gi|149740731|gb|EDM54830.1| flagellar biosynthetic protein FliP [Vibrio cholerae MZO-2]
          Length = 299

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 89/206 (43%), Positives = 135/206 (65%), Gaps = 5/206 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   + T+L   P ++I++T F R ++V SILR  MG+   P N VII +ALF+TF++M
Sbjct: 97  LQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFIM 156

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +P  ++  E  +QP +N QIT   A     EP   FM   TR  DL  F++M+       
Sbjct: 157 APVFNQINEQAVQPYLNEQITARQAFDLAQEPLKAFMLKQTRVNDLETFVEMSG-----A 211

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGMMML P  +
Sbjct: 212 QVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGMMMLSPMIV 271

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 272 SLPFKLMLFVLVDGWNLILSTLAGSF 297


>gi|153836933|ref|ZP_01989600.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus
           AQ3810]
 gi|149749706|gb|EDM60451.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus
           AQ3810]
          Length = 276

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 92/219 (42%), Positives = 137/219 (62%), Gaps = 5/219 (2%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
              P      +  ++   + T+L   P ++I++T F R ++V SILR  MG+   P N V
Sbjct: 61  TTNPDGSEDYSVTLQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQV 120

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           II +ALF+TF+VMSP L+   +  IQP +N Q+T   A      P   FM   TR KDL 
Sbjct: 121 IIGIALFLTFFVMSPVLNEINDTAIQPYLNEQVTAREAFDVAQVPMKAFMLKQTRIKDLE 180

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
            F++M+        +T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++
Sbjct: 181 TFVNMSG-----EQVTNPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVL 235

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MAMGMMML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 236 MAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 274


>gi|138894755|ref|YP_001125208.1| flagellar biosynthesis protein FliP [Geobacillus
           thermodenitrificans NG80-2]
 gi|196247623|ref|ZP_03146325.1| flagellar biosynthetic protein FliP [Geobacillus sp. G11MC16]
 gi|134266268|gb|ABO66463.1| Flagellar protein [Geobacillus thermodenitrificans NG80-2]
 gi|196212407|gb|EDY07164.1| flagellar biosynthetic protein FliP [Geobacillus sp. G11MC16]
          Length = 222

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 94/195 (48%), Positives = 138/195 (70%), Gaps = 4/195 (2%)

Query: 51  IAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMG 110
           IAP +LIM+TCF R +IV S +RT +G   +PPN V+I LALF+TF++M+PT     +  
Sbjct: 31  IAPGILIMMTCFTRIVIVLSFVRTSLGTQQMPPNQVLIGLALFLTFFIMAPTWKDINDQA 90

Query: 111 IQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYR 170
           +QPL   +I    A +R A P   FM  +TR++DL+LF+  + +    T     + I   
Sbjct: 91  LQPLFAEKIDLDEAYERAAIPLKQFMSKHTRQQDLALFLSYSGAEQPKT----VNDIPLT 146

Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230
            L+P+F ISEL+ +F++GF+I +PFL+IDMIVA+++M+MGMMMLPP  ISLPFK++ FVL
Sbjct: 147 ALVPAFAISELKTAFQMGFMIFIPFLVIDMIVASVLMSMGMMMLPPVMISLPFKILLFVL 206

Query: 231 IDGWSLLVENLVKSF 245
           +DGW L+V++L++SF
Sbjct: 207 VDGWYLVVKSLLQSF 221


>gi|146307834|ref|YP_001188299.1| flagellar biosynthesis protein FliP [Pseudomonas mendocina ymp]
 gi|145576035|gb|ABP85567.1| flagellar biosynthetic protein FliP [Pseudomonas mendocina ymp]
          Length = 261

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 93/209 (44%), Positives = 138/209 (66%), Gaps = 4/209 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  ++   I T LS  P  ++++T F R IIVFSILR  +G+   P N +++ LALF+T 
Sbjct: 54  SVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILVGLALFLTL 113

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           ++M+P  DR     +QP +N +I    A+ R   P   FM   TRE DL+LF+ ++    
Sbjct: 114 FIMAPIFDRINTDALQPYLNEEIVAQEALTRAEGPIRDFMLAQTRESDLALFVRLS---- 169

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
           + TD+   + +   IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA+I+MAMGMMML P
Sbjct: 170 KRTDLAGVEDVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASILMAMGMMMLSP 229

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             ISLPFK++ FVL+DGW+L++  L  SF
Sbjct: 230 LIISLPFKIMLFVLVDGWALIMGTLAASF 258


>gi|121586791|ref|ZP_01676573.1| flagellar biosynthetic protein FliP [Vibrio cholerae 2740-80]
 gi|121548958|gb|EAX58997.1| flagellar biosynthetic protein FliP [Vibrio cholerae 2740-80]
          Length = 299

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 89/206 (43%), Positives = 135/206 (65%), Gaps = 5/206 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   + T+L   P ++I++T F R ++V SILR  MG+   P N VII +ALF+TF++M
Sbjct: 97  LQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFIM 156

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +P  ++  E  +QP +N QIT   A     EP   FM   TR  DL  F++M+       
Sbjct: 157 APVFNQINEQAVQPYLNEQITARQAFDLAQEPLKAFMLKQTRVNDLETFVEMSG-----A 211

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGMMML P  +
Sbjct: 212 QVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGMMMLSPMIV 271

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 272 SLPFKLMLFVLVDGWNLILSTLAGSF 297


>gi|308048762|ref|YP_003912328.1| flagellar biosynthetic protein FliP [Ferrimonas balearica DSM 9799]
 gi|307630952|gb|ADN75254.1| flagellar biosynthetic protein FliP [Ferrimonas balearica DSM 9799]
          Length = 251

 Score =  203 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 89/235 (37%), Positives = 146/235 (62%), Gaps = 6/235 (2%)

Query: 13  TPELVFAKSSLHDVM--NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
            P L  A   +  +     P      +  ++  G+ T+L+  P ++I++T F R I+V +
Sbjct: 16  VPSLALADPGIPAITLTTGPDGTQQYSVSLQILGLMTLLTFLPAMVILMTSFTRIIVVLA 75

Query: 71  ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
           ILR  +G+   P N V++ +ALF++ ++M+P LDR  E  + P M  QI    A++R   
Sbjct: 76  ILRQALGLQQTPSNQVLLGMALFLSLFIMTPVLDRVYEDALVPYMGEQIGALEAMERAKA 135

Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
           P   FM + TR  D++ F++++      TDI   D +   +LIP+F+ SEL+ +F+IGF+
Sbjct: 136 PVKDFMLSQTRITDINTFVEISGR----TDIASVDEVPMTVLIPAFVTSELKTAFQIGFM 191

Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           + +PFL+ID++VA+++MAMGMMML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 192 LFVPFLVIDLVVASVLMAMGMMMLSPMIVSLPFKIMLFVLVDGWNLVMGTLATSF 246


>gi|187926923|ref|YP_001893268.1| flagellar biosynthetic protein FliP [Ralstonia pickettii 12J]
 gi|241665252|ref|YP_002983611.1| flagellar biosynthesis protein FliP [Ralstonia pickettii 12D]
 gi|187728677|gb|ACD29841.1| flagellar biosynthetic protein FliP [Ralstonia pickettii 12J]
 gi|240867279|gb|ACS64939.1| flagellar biosynthetic protein FliP [Ralstonia pickettii 12D]
          Length = 249

 Score =  203 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 101/244 (41%), Positives = 146/244 (59%), Gaps = 6/244 (2%)

Query: 4   YCFFALFLVTPEL-VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCF 62
               AL    P +   A+  L  ++   A     T  V+T    T L   P +++M++ F
Sbjct: 10  LVTLALLGAAPAVFAQAQPGLP-LLTGTAGGQSYTLPVQTLIFLTSLGFLPAIILMMSSF 68

Query: 63  PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122
            R IIV S+LR  +G  + PPN V+I LALF+TF+VMSP LD+       PL +N+IT  
Sbjct: 69  TRIIIVLSLLRHALGTQTTPPNQVLIGLALFLTFFVMSPVLDKVYTDAYVPLRDNKITVE 128

Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182
            A+   A P   FM   TRE DL+LF+ M +       I   +    R LIP+F+ SEL+
Sbjct: 129 QAMDTAATPLRQFMLKQTREPDLALFVKMGNMP----AIASPEQTPMRALIPAFVTSELK 184

Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
            +F+IGF I +PFL+ID++VA ++M+MGMMM+ P+  SLPFK++ FVL+DGW LL+ +L 
Sbjct: 185 SAFQIGFAIFIPFLVIDIVVAAVLMSMGMMMVTPSIFSLPFKIMLFVLVDGWHLLLGSLA 244

Query: 243 KSFI 246
           +SF+
Sbjct: 245 QSFV 248


>gi|15642122|ref|NP_231754.1| flagellar biosynthesis protein FliP [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121727223|ref|ZP_01680390.1| flagellar biosynthetic protein FliP [Vibrio cholerae V52]
 gi|147674933|ref|YP_001217644.1| flagellar biosynthesis protein FliP [Vibrio cholerae O395]
 gi|153818972|ref|ZP_01971639.1| flagellar biosynthetic protein FliP [Vibrio cholerae NCTC 8457]
 gi|153822891|ref|ZP_01975558.1| flagellar biosynthetic protein FliP [Vibrio cholerae B33]
 gi|227082248|ref|YP_002810799.1| flagellar biosynthetic protein FliP [Vibrio cholerae M66-2]
 gi|229507792|ref|ZP_04397297.1| flagellar biosynthesis protein FliP [Vibrio cholerae BX 330286]
 gi|229511971|ref|ZP_04401450.1| flagellar biosynthesis protein FliP [Vibrio cholerae B33]
 gi|229513774|ref|ZP_04403236.1| flagellar biosynthesis protein FliP [Vibrio cholerae TMA 21]
 gi|229519107|ref|ZP_04408550.1| flagellar biosynthesis protein FliP [Vibrio cholerae RC9]
 gi|229522076|ref|ZP_04411493.1| flagellar biosynthesis protein FliP [Vibrio cholerae TM 11079-80]
 gi|229524125|ref|ZP_04413530.1| flagellar biosynthesis protein FliP [Vibrio cholerae bv. albensis
           VL426]
 gi|229607337|ref|YP_002877985.1| flagellar biosynthesis protein FliP [Vibrio cholerae MJ-1236]
 gi|254226359|ref|ZP_04919948.1| flagellar biosynthetic protein FliP [Vibrio cholerae V51]
 gi|254291359|ref|ZP_04962152.1| flagellar biosynthetic protein FliP [Vibrio cholerae AM-19226]
 gi|254849208|ref|ZP_05238558.1| flagellar biosynthesis protein FliP [Vibrio cholerae MO10]
 gi|255745138|ref|ZP_05419087.1| flagellar biosynthesis protein FliP [Vibrio cholera CIRS 101]
 gi|262153472|ref|ZP_06028602.1| flagellar biosynthesis protein FliP [Vibrio cholerae INDRE 91/1]
 gi|262167482|ref|ZP_06035188.1| flagellar biosynthesis protein FliP [Vibrio cholerae RC27]
 gi|262191372|ref|ZP_06049562.1| flagellar biosynthesis protein FliP [Vibrio cholerae CT 5369-93]
 gi|297582021|ref|ZP_06943940.1| flagellar biosynthetic protein FliP [Vibrio cholerae RC385]
 gi|298497855|ref|ZP_07007662.1| flagellar biosynthetic protein FliP [Vibrio cholerae MAK 757]
 gi|9656673|gb|AAF95268.1| flagellar biosynthetic protein FliP [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121630468|gb|EAX62861.1| flagellar biosynthetic protein FliP [Vibrio cholerae V52]
 gi|125621109|gb|EAZ49454.1| flagellar biosynthetic protein FliP [Vibrio cholerae V51]
 gi|126510467|gb|EAZ73061.1| flagellar biosynthetic protein FliP [Vibrio cholerae NCTC 8457]
 gi|126519587|gb|EAZ76810.1| flagellar biosynthetic protein FliP [Vibrio cholerae B33]
 gi|146316816|gb|ABQ21355.1| flagellar biosynthetic protein FliP [Vibrio cholerae O395]
 gi|150422689|gb|EDN14643.1| flagellar biosynthetic protein FliP [Vibrio cholerae AM-19226]
 gi|227010136|gb|ACP06348.1| flagellar biosynthetic protein FliP [Vibrio cholerae M66-2]
 gi|227014019|gb|ACP10229.1| flagellar biosynthetic protein FliP [Vibrio cholerae O395]
 gi|229337706|gb|EEO02723.1| flagellar biosynthesis protein FliP [Vibrio cholerae bv. albensis
           VL426]
 gi|229341001|gb|EEO06006.1| flagellar biosynthesis protein FliP [Vibrio cholerae TM 11079-80]
 gi|229343796|gb|EEO08771.1| flagellar biosynthesis protein FliP [Vibrio cholerae RC9]
 gi|229348955|gb|EEO13912.1| flagellar biosynthesis protein FliP [Vibrio cholerae TMA 21]
 gi|229351936|gb|EEO16877.1| flagellar biosynthesis protein FliP [Vibrio cholerae B33]
 gi|229355297|gb|EEO20218.1| flagellar biosynthesis protein FliP [Vibrio cholerae BX 330286]
 gi|229369992|gb|ACQ60415.1| flagellar biosynthesis protein FliP [Vibrio cholerae MJ-1236]
 gi|254844913|gb|EET23327.1| flagellar biosynthesis protein FliP [Vibrio cholerae MO10]
 gi|255736968|gb|EET92364.1| flagellar biosynthesis protein FliP [Vibrio cholera CIRS 101]
 gi|262024054|gb|EEY42749.1| flagellar biosynthesis protein FliP [Vibrio cholerae RC27]
 gi|262030709|gb|EEY49343.1| flagellar biosynthesis protein FliP [Vibrio cholerae INDRE 91/1]
 gi|262032747|gb|EEY51295.1| flagellar biosynthesis protein FliP [Vibrio cholerae CT 5369-93]
 gi|297533716|gb|EFH72558.1| flagellar biosynthetic protein FliP [Vibrio cholerae RC385]
 gi|297542188|gb|EFH78238.1| flagellar biosynthetic protein FliP [Vibrio cholerae MAK 757]
          Length = 299

 Score =  203 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 89/206 (43%), Positives = 135/206 (65%), Gaps = 5/206 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   + T+L   P ++I++T F R ++V SILR  MG+   P N VII +ALF+TF++M
Sbjct: 97  LQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFIM 156

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +P  ++  E  +QP +N QIT   A     EP   FM   TR  DL  F++M+       
Sbjct: 157 APVFNQINEQAVQPYLNEQITARQAFDLAQEPLKAFMLKQTRVNDLETFVEMSG-----A 211

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGMMML P  +
Sbjct: 212 QVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGMMMLSPMIV 271

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 272 SLPFKLMLFVLVDGWNLILSTLAGSF 297


>gi|83815985|ref|YP_446686.1| flagellar biosynthesis protein FliP [Salinibacter ruber DSM 13855]
 gi|83757379|gb|ABC45492.1| flagellar biosynthetic protein FliP [Salinibacter ruber DSM 13855]
          Length = 279

 Score =  203 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 90/206 (43%), Positives = 142/206 (68%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   + T+L++AP ++I++T F R ++VFSILR  +G+   PP  V+I L+LF++ ++M
Sbjct: 75  IQLLLLLTVLTLAPAIIILMTSFTRLVVVFSILRRALGLQRSPPRQVVIGLSLFLSLFIM 134

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P L+   +  ++P ++N+IT+  A  R + P   FM  +TR+KDL LFMDM        
Sbjct: 135 QPVLETVHQDALRPYLDNEITQQEAFDRASTPMKRFMLTHTRDKDLMLFMDMGEI----E 190

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                D     +++P+F+ISELR +F+IGF+I LPFLI+D++VA+I+M+MGMMMLPP  I
Sbjct: 191 SFEGPDEAPLYVVVPAFVISELRIAFQIGFMIFLPFLIVDLVVASILMSMGMMMLPPVMI 250

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLP K++ FVL DGW L+VE+L++ +
Sbjct: 251 SLPIKLLLFVLTDGWYLIVESLMQGY 276


>gi|308063526|gb|ADO05413.1| flagellar biosynthesis protein FliP [Helicobacter pylori Sat464]
          Length = 248

 Score =  203 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 104/227 (45%), Positives = 157/227 (69%), Gaps = 4/227 (1%)

Query: 19  AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           A  S++  +N P D       +    + T+L +AP L++++T F R I+VFS LRT +G 
Sbjct: 23  ALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGT 82

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
              PP  +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ A PF  FM  
Sbjct: 83  QQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLK 142

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
           NTREKDL+LF  + +  +  T     D +   +LIP+FMISEL+ +F+IGFL+ LPFL+I
Sbjct: 143 NTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVI 198

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           DM++++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LL ENLV SF
Sbjct: 199 DMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 245


>gi|17548596|ref|NP_521936.1| flagellar biosynthesis protein FliP [Ralstonia solanacearum
           GMI1000]
 gi|17430844|emb|CAD17526.1| probable flagellar biosynthetic flip transmembrane protein
           [Ralstonia solanacearum GMI1000]
          Length = 249

 Score =  203 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 98/229 (42%), Positives = 140/229 (61%), Gaps = 5/229 (2%)

Query: 17  VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
             A+  L  +       S S   V+T    T L   P +L+M++ F R IIV S+LR  +
Sbjct: 24  AQAQPGLPLLTGTAGGQSYSL-PVQTLVFLTSLGFLPAILLMMSSFTRIIIVLSLLRHAL 82

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G  + PPN V+I LALF+TF+VMSP LD+       PL +++I+   A+   A P   FM
Sbjct: 83  GTQTTPPNQVLIGLALFLTFFVMSPVLDKVYTDAYLPLRDSKISVEQALDTAATPLRQFM 142

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
              TRE DL+LF  M +       I   D +  R LIP+F+ SEL+ +F+IGF I +PFL
Sbjct: 143 LKQTREPDLALFAKMGNLP----PIASPDQVPMRALIPAFVTSELKTAFQIGFAIFIPFL 198

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +ID++VA ++M+MGMMM+ P+  SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 199 VIDIVVAAVLMSMGMMMVTPSIFSLPFKIMLFVLVDGWHLLLGSLAQSF 247


>gi|116694514|ref|YP_728725.1| flagellar biosynthesis protein FliP [Ralstonia eutropha H16]
 gi|113529013|emb|CAJ95360.1| flagellar biosynthesis protein [Ralstonia eutropha H16]
          Length = 261

 Score =  203 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 96/217 (44%), Positives = 145/217 (66%), Gaps = 4/217 (1%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P    I +  V+T  + T LS  P  ++++T F R IIV  +LR+ +G  + PPN V++ 
Sbjct: 48  PGGGQIWSLPVQTLVLLTSLSFLPAAMLLMTGFTRIIIVLGLLRSALGTATSPPNQVLVG 107

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           L+LF+TF+VM+P  DR      +PL  N+I+   A  + AEP   FM   TREKDL++F 
Sbjct: 108 LSLFLTFFVMAPVFDRVYNDAYKPLSENKISLEAAAAKAAEPLKAFMLRQTREKDLAMFA 167

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
            MA +     ++   + +   IL+P+F+ SEL+ +F+IGF I +PFLIID++VA+++MAM
Sbjct: 168 QMAKAP----EMQGPEEVPLSILVPAFVTSELKTAFQIGFTIFIPFLIIDLVVASVLMAM 223

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF+
Sbjct: 224 GMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSFM 260


>gi|300693349|ref|YP_003749322.1| flip: flagellar biosynthesis protein. flip/mopc/spap family
           [Ralstonia solanacearum PSI07]
 gi|299075386|emb|CBJ34681.1| fliP: flagellar biosynthesis protein. fliP/mopC/spaP family
           [Ralstonia solanacearum PSI07]
          Length = 249

 Score =  203 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 98/229 (42%), Positives = 140/229 (61%), Gaps = 5/229 (2%)

Query: 17  VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
             A+  L  +       S S   V+T    T L   P +L+M++ F R IIV S+LR  +
Sbjct: 24  AQAQPGLPLLTGTAGGQSYSL-PVQTLVFLTSLGFLPAILLMMSSFTRIIIVLSLLRHAL 82

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G  + PPN V+I LALF+TF+VMSP LD+       PL +++I+   A+   A P   FM
Sbjct: 83  GTQTTPPNQVLIGLALFLTFFVMSPVLDKVYTDAYVPLRDSKISVEQALDTAATPMRQFM 142

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
              TRE DL+LF  M +       I   D +  R LIP+F+ SEL+ +F+IGF I +PFL
Sbjct: 143 LKQTREPDLALFAKMGNLP----PIASPDQVPMRALIPAFVTSELKTAFQIGFAIFIPFL 198

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +ID++VA ++M+MGMMM+ P+  SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 199 VIDIVVAAVLMSMGMMMVTPSIFSLPFKIMLFVLVDGWHLLLGSLAQSF 247


>gi|294013059|ref|YP_003546519.1| flagellar biosynthetic protein FliP [Sphingobium japonicum UT26S]
 gi|292676389|dbj|BAI97907.1| flagellar biosynthetic protein FliP [Sphingobium japonicum UT26S]
          Length = 288

 Score =  203 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 89/218 (40%), Positives = 137/218 (62%), Gaps = 4/218 (1%)

Query: 28  NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87
            I  D    +  ++   + ++L++ P L++M+T F R IIV S+LR  +G+   PPN V+
Sbjct: 73  QISGDGRSLSLSLQILILMSLLTVLPSLILMMTSFTRIIIVLSLLRQALGLQQTPPNQVL 132

Query: 88  ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147
           + L+LF++ +VM P +D+       P    QI+   A+ R  +    FM   TRE DL L
Sbjct: 133 VGLSLFLSLFVMRPAIDQINGQAFDPYGKGQISIEEAVGRSGKVLHGFMTKQTRETDLKL 192

Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
           F ++A +    T       I + IL+P+F+ SEL+ +F+IGF+I LPFLIID++VA+ +M
Sbjct: 193 FQNLAEAPAFRTPA----DIPFSILLPAFVTSELKTAFQIGFMIFLPFLIIDLVVASTLM 248

Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           A+GMMML PT IS+PFK++ FVL+DGW+L + +L  SF
Sbjct: 249 ALGMMMLSPTIISMPFKLLLFVLVDGWALTMGSLAGSF 286


>gi|323136548|ref|ZP_08071629.1| flagellar biosynthetic protein FliP [Methylocystis sp. ATCC 49242]
 gi|322397865|gb|EFY00386.1| flagellar biosynthetic protein FliP [Methylocystis sp. ATCC 49242]
          Length = 243

 Score =  203 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 120/245 (48%), Positives = 165/245 (67%), Gaps = 4/245 (1%)

Query: 2   IRYCFFALFLVTPELVFAKSSLHDVMNIPADL-SISTWIVRTFGIFTILSIAPILLIMVT 60
           +        ++TP + FA   L     +P    S S  I++  G  T+LSIAP LLIMVT
Sbjct: 1   MNRLLIIGVMMTPSIAFAAEGLDLNALLPNGAASSSGKIIQLLGALTVLSIAPGLLIMVT 60

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F RF I  S LRTG+G+ S P NLV+ISLALFMTFYVM+P ++++   G++PL+ N+IT
Sbjct: 61  SFTRFAIALSFLRTGLGLQSTPANLVLISLALFMTFYVMTPAMNQAWSSGVKPLVENKIT 120

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
           E  A ++++ PF  FM  + R+KD+ LF D+          T+       +LIP+FMISE
Sbjct: 121 EVEAFEKISAPFREFMIAHVRDKDIRLFEDLRKVEPSTKGKTELQ---LSVLIPAFMISE 177

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           LRR FEIGFLI++PFL ID+IVA + M+MGMMMLPP +ISLP K++FF+LIDGW+LL  +
Sbjct: 178 LRRGFEIGFLIVVPFLAIDIIVAVLTMSMGMMMLPPATISLPAKILFFILIDGWNLLAGS 237

Query: 241 LVKSF 245
           L++S+
Sbjct: 238 LIRSY 242


>gi|254779331|ref|YP_003057436.1| flagellar biosynthesis protein FliP [Helicobacter pylori B38]
 gi|254001242|emb|CAX29217.1| Flagellar biosynthetic protein FliP [Helicobacter pylori B38]
          Length = 248

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 104/227 (45%), Positives = 157/227 (69%), Gaps = 4/227 (1%)

Query: 19  AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           A  S++  +N P D       +    + T+L +AP L++++T F R I+VFS LRT +G 
Sbjct: 23  ALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGT 82

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
              PP  +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ A PF  FM  
Sbjct: 83  QQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLK 142

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
           NTREKDL+LF  + +  +  T     D +   +LIP+FMISEL+ +F+IGFL+ LPFL+I
Sbjct: 143 NTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVI 198

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           DM++++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LL ENLV SF
Sbjct: 199 DMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 245


>gi|323491455|ref|ZP_08096639.1| flagellar biosynthesis protein FliP [Vibrio brasiliensis LMG 20546]
 gi|323314324|gb|EGA67404.1| flagellar biosynthesis protein FliP [Vibrio brasiliensis LMG 20546]
          Length = 291

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 93/237 (39%), Positives = 143/237 (60%), Gaps = 7/237 (2%)

Query: 11  LVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIV 68
           + T  LV +   +              + +  +   + T+L   P ++I++T F R ++V
Sbjct: 58  IATGSLVGSGGGIPAFTMTTNSDGSEDYSINLQILALMTMLGFLPAMVILMTSFTRIVVV 117

Query: 69  FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128
            SILR  MG+   P N VII +A+F+TF++MSP L +  +  IQP +N QIT   A    
Sbjct: 118 MSILRQAMGLQQTPSNQVIIGIAIFLTFFIMSPVLSKINDDAIQPYINEQITARQAFDLA 177

Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188
             P   FM   TR KDL  F++++ S+      T  + +   +LIP+F+ SEL+ +F+IG
Sbjct: 178 QTPMKDFMLKQTRVKDLETFVNISGST-----ATAPEDVSMAVLIPAFITSELKTAFQIG 232

Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           F++ LPFLIID++VA+++MAMGMMML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 233 FMLFLPFLIIDLVVASVLMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLILSTLAGSF 289


>gi|297379879|gb|ADI34766.1| flagellar biosynthetic protein FliP [Helicobacter pylori v225d]
          Length = 248

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 103/227 (45%), Positives = 157/227 (69%), Gaps = 4/227 (1%)

Query: 19  AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           A  S++  +N P D       +    + T+L +AP L++++T F R I+VFS LRT +G 
Sbjct: 23  ALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGT 82

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
              PP  +++SL+L +TF++M P+L ++ + GI+P ++ +I+ T A ++ A PF  FM  
Sbjct: 83  QQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYVDKKISYTEAFEKSALPFKEFMLK 142

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
           NTREKDL+LF  + +  +  T     D +   +LIP+FMISEL+ +F+IGFL+ LPFL+I
Sbjct: 143 NTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVI 198

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           DM++++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LL ENLV SF
Sbjct: 199 DMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 245


>gi|254519408|ref|ZP_05131464.1| flagellar biosynthetic protein FliP [Clostridium sp. 7_2_43FAA]
 gi|226913157|gb|EEH98358.1| flagellar biosynthetic protein FliP [Clostridium sp. 7_2_43FAA]
          Length = 257

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 83/193 (43%), Positives = 129/193 (66%), Gaps = 3/193 (1%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P ++IM+T F R I+VFS L++ +G     PN ++I LALF+T ++M P          +
Sbjct: 66  PSIIIMMTSFTRIIVVFSFLKSALGAQQSIPNQILIGLALFLTIFIMQPVYSEINNNAFK 125

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P M N IT+  A++  ++P   FM   TR+KDL LF++ +            D+I   ++
Sbjct: 126 PFMENTITQDEAMEAGSKPLREFMLKQTRQKDLELFIETSKLDKEEI---TRDNIPLTVV 182

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           IP+F ISEL+ +F+IGFL+ LPFLIIDM+VA+++M+MGM M+PP  ++LPFK++ FV++D
Sbjct: 183 IPAFAISELKTAFQIGFLLFLPFLIIDMVVASVLMSMGMFMVPPVMVALPFKLLLFVMVD 242

Query: 233 GWSLLVENLVKSF 245
           GW L+V++L+ SF
Sbjct: 243 GWYLMVKSLIMSF 255


>gi|109947417|ref|YP_664645.1| flagellar biosynthesis protein FliP [Helicobacter acinonychis str.
           Sheeba]
 gi|109714638|emb|CAJ99646.1| flagellar biosynthesis protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 248

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 106/242 (43%), Positives = 160/242 (66%), Gaps = 4/242 (1%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
           +  FAL            S++  +N P D       +    + T+L +AP L++++T F 
Sbjct: 8   FLIFALICPLMSTDNTLPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFT 67

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
           R I+VFS LRT +G    PP  +++SL+L +TF++M P+L ++ ++GI+P M+ +I+ T 
Sbjct: 68  RLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDIGIKPYMDKKISYTE 127

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
           A ++ A PF  FM  NTREKDL+LF  +    +  T     D +   +LIP+FMISEL+ 
Sbjct: 128 AFEKSALPFKEFMLKNTREKDLALFFRIRQLPNPKT----PDDVSLSVLIPAFMISELKT 183

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
           +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LL ENLV 
Sbjct: 184 AFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVA 243

Query: 244 SF 245
           SF
Sbjct: 244 SF 245


>gi|307637369|gb|ADN79819.1| Flagellar biosynthesis protein [Helicobacter pylori 908]
 gi|325997557|gb|ADZ49765.1| Flagellar biosynthesis protein [Helicobacter pylori 2017]
          Length = 250

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 109/251 (43%), Positives = 166/251 (66%), Gaps = 10/251 (3%)

Query: 1   MIRYCFFALFLVTPELV------FAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPI 54
           M  + F  L L+ P +        A  S++  +N P+D       +    + T+L +AP 
Sbjct: 1   MRFFIFLMLALICPLICPLMSADSALPSVNLSLNAPSDPKQLVTTLNVIALLTLLVLAPS 60

Query: 55  LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
           L++++T F R I+VFS LRT +G    PP  +++SL+L +TF++M P+L ++ + GI+P 
Sbjct: 61  LILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPY 120

Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
           M+ +I+ T A ++ A PF  FM  NTREKDL+LF  + +  +  T     D +   +LIP
Sbjct: 121 MDKKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKT----PDDVSLSVLIP 176

Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234
           +FMISEL+ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP  ISLPFK++ F+L+DG+
Sbjct: 177 AFMISELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGF 236

Query: 235 SLLVENLVKSF 245
           +LL ENLV SF
Sbjct: 237 NLLTENLVASF 247


>gi|315648123|ref|ZP_07901224.1| flagellar biosynthetic protein FliP [Paenibacillus vortex V453]
 gi|315276769|gb|EFU40112.1| flagellar biosynthetic protein FliP [Paenibacillus vortex V453]
          Length = 250

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 93/242 (38%), Positives = 148/242 (61%), Gaps = 5/242 (2%)

Query: 5   CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSI-APILLIMVTCFP 63
            F     +     FA    +  + I  +         +  +   +   AP +L+++T F 
Sbjct: 11  IFILFGFLFSHTAFADPIPNIDIQIGNEGDTPGTSSLSLILLITILSIAPAILVLMTSFT 70

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
           R +IV   +RT +G    PPN V+I LALF+T +VM+PTL    ++ +QP +  +I++T 
Sbjct: 71  RIVIVLGFVRTSLGTMQTPPNQVLIGLALFLTLFVMAPTLSSINDVALQPYLKGEISQTE 130

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
           A+ +  +P   FM ++TREKDL LFM+   +    T     + I   +L+P+F ISEL+ 
Sbjct: 131 ALDKAQDPMKKFMFSHTREKDLLLFMNYTGAEKPET----YEDIPLTVLVPAFAISELKT 186

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
            F++GF+I +PFL+ID++VA+++MAMGMMMLPP  ISLPFK++ FVL+DGW L+V++++ 
Sbjct: 187 GFQMGFMIFIPFLVIDIVVASVLMAMGMMMLPPVMISLPFKILLFVLVDGWYLVVKSMLM 246

Query: 244 SF 245
           SF
Sbjct: 247 SF 248


>gi|162147465|ref|YP_001601926.1| flagellar biosynthesis protein FliP [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786042|emb|CAP55624.1| putative flagellar biosynthetic protein fliP [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 259

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 103/238 (43%), Positives = 155/238 (65%), Gaps = 4/238 (1%)

Query: 8   ALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67
           A+    P L  A+S   D+     D   ++ +V+   + TILS+AP LL+MVT F R I+
Sbjct: 24  AVLAGMPTLAHAQSLSLDLGKGMGDAGTTSRLVQLTALITILSLAPSLLVMVTAFTRIIV 83

Query: 68  VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
           V S+LR  +G    PPN V+I LALF+TF+VM P   +S + GI P+M+ +++E   +  
Sbjct: 84  VLSLLRGAIGAQGAPPNTVLIGLALFLTFFVMQPVFQQSWDHGIVPMMDGRVSEMEGLTA 143

Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
            AEPF  FM  N R  D++ F+ +A+     T         +R+++P+FMI EL R FE+
Sbjct: 144 AAEPFRTFMLANARPADITTFLHLANVPPPATPAETP----WRVIMPAFMIGELSRGFEM 199

Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GFL+ LPFL+ID++ ++++M++GMMMLPP +ISLPFK+IFFV++DGW ++   LV+SF
Sbjct: 200 GFLLYLPFLVIDIVTSSVLMSLGMMMLPPATISLPFKLIFFVMVDGWQMVAGGLVRSF 257


>gi|207728358|ref|YP_002256752.1| flagellar biosynthetic protein flip [Ralstonia solanacearum MolK2]
 gi|206591604|emb|CAQ57216.1| flagellar biosynthetic protein flip [Ralstonia solanacearum MolK2]
          Length = 252

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 99/229 (43%), Positives = 140/229 (61%), Gaps = 5/229 (2%)

Query: 17  VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
             A+  L  +       S S   V+T    T L   P +L+M++ F R IIV S+LR  +
Sbjct: 27  AQAQPGLPLLTGAAGGQSYSL-PVQTLVFLTSLGFLPAILLMMSSFTRIIIVLSLLRHAL 85

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G  + PPN V+I LALF+TF+VMSP LD+       PL +++I+   A+   A P   FM
Sbjct: 86  GTQTTPPNQVLIGLALFLTFFVMSPVLDKVYTDAYVPLRDSKISVEQALDTAATPLRQFM 145

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
              TRE DL+LF  M +       I   D +  R LIP+F+ SEL+ SF+IGF I +PFL
Sbjct: 146 LKQTREPDLALFAKMGNLP----PIASPDQVPMRALIPAFVTSELKTSFQIGFAIFIPFL 201

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +ID++VA ++M+MGMMM+ P+  SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 202 VIDIVVAAVLMSMGMMMVTPSIFSLPFKIMLFVLVDGWHLLLGSLAQSF 250


>gi|325273552|ref|ZP_08139782.1| flagellar biosynthesis protein FliP [Pseudomonas sp. TJI-51]
 gi|324101312|gb|EGB98928.1| flagellar biosynthesis protein FliP [Pseudomonas sp. TJI-51]
          Length = 255

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 95/220 (43%), Positives = 139/220 (63%), Gaps = 4/220 (1%)

Query: 26  VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
           + N        +  ++   I T LS  P  +I++T F R IIVFSILR  +G+   P N 
Sbjct: 37  LSNTADGQQEYSVSLQILLIMTALSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQ 96

Query: 86  VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145
           ++  +ALF+T ++M+P  DR  +  +QP +  Q+T   AI +   P   FM   TR+ DL
Sbjct: 97  LLTGMALFLTMFIMAPVFDRVNQDALQPYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDL 156

Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
            LFM ++    + TDI   D +   IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA++
Sbjct: 157 DLFMRLS----KRTDIAGPDQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASV 212

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +MAMGMMML P  ISLPFK++ FVL+DGW+L++  L  SF
Sbjct: 213 LMAMGMMMLSPLIISLPFKIMLFVLVDGWALIMGTLASSF 252


>gi|108563093|ref|YP_627409.1| flagellar biosynthesis protein FliP [Helicobacter pylori HPAG1]
 gi|107836866|gb|ABF84735.1| flagellar biosynthetic protein [Helicobacter pylori HPAG1]
 gi|261839493|gb|ACX99258.1| flagellar biosynthesis protein FliP [Helicobacter pylori 52]
 gi|308062010|gb|ADO03898.1| flagellar biosynthesis protein FliP [Helicobacter pylori Cuz20]
 gi|317009302|gb|ADU79882.1| flagellar biosynthesis protein FliP [Helicobacter pylori India7]
 gi|317012496|gb|ADU83104.1| flagellar biosynthesis protein FliP [Helicobacter pylori
           Lithuania75]
 gi|317177503|dbj|BAJ55292.1| flagellar biosynthesis protein FliP [Helicobacter pylori F16]
 gi|317178956|dbj|BAJ56744.1| flagellar biosynthesis protein FliP [Helicobacter pylori F30]
 gi|317181997|dbj|BAJ59781.1| flagellar biosynthesis protein FliP [Helicobacter pylori F57]
          Length = 248

 Score =  202 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 104/227 (45%), Positives = 157/227 (69%), Gaps = 4/227 (1%)

Query: 19  AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           A  S++  +N P D       +    + T+L +AP L++++T F R I+VFS LRT +G 
Sbjct: 23  ALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGT 82

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
              PP  +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ A PF  FM  
Sbjct: 83  QQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLK 142

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
           NTREKDL+LF  + +  +  T     D +   +LIP+FMISEL+ +F+IGFL+ LPFL+I
Sbjct: 143 NTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVI 198

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           DM++++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LL ENLV SF
Sbjct: 199 DMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 245


>gi|254433683|ref|ZP_05047191.1| flagellar biosynthetic protein FliP [Nitrosococcus oceani AFC27]
 gi|207090016|gb|EDZ67287.1| flagellar biosynthetic protein FliP [Nitrosococcus oceani AFC27]
          Length = 243

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 96/233 (41%), Positives = 150/233 (64%), Gaps = 6/233 (2%)

Query: 15  ELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72
              +A   +  +          T+ V  +  G+ T+L++ P  ++++T F R I+VFSIL
Sbjct: 11  AAGWAAPGVPALAVTADGNGEQTYTVTLQILGLMTVLTLLPAAVMVMTSFTRIIVVFSIL 70

Query: 73  RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132
           R  +G+   P + ++I LALF+TF++MSP LD++ + G++P    +I+ T A+ RV EPF
Sbjct: 71  RQALGLAQTPSSQILIGLALFLTFFIMSPVLDKAYQEGVKPYFQEEISVTDALARVREPF 130

Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192
             FM   TRE DL LF +++            + + + +L+P+F+ SEL+ +F+IGFL+ 
Sbjct: 131 HHFMIAQTRETDLKLFAEISGR----EAFESPEQVPFSLLVPAFITSELKTAFQIGFLLF 186

Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +PFLIID++VA+++MAMGMMML P  +SLPFK++ FVLIDGWSLL+  L  SF
Sbjct: 187 IPFLIIDLVVASVLMAMGMMMLSPMLVSLPFKLLLFVLIDGWSLLMGTLASSF 239


>gi|152986552|ref|YP_001349235.1| flagellar biosynthesis protein FliP [Pseudomonas aeruginosa PA7]
 gi|150961710|gb|ABR83735.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa PA7]
          Length = 255

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 96/220 (43%), Positives = 139/220 (63%), Gaps = 4/220 (1%)

Query: 26  VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
           V          +  ++   I T LS  P  ++++T F R IIVFSILR  +G+ S P N 
Sbjct: 37  VTTNGQGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQ 96

Query: 86  VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145
           V++ LALF+T +VM+P  DR     +QP +N QI    A+QR   P   FM   TR  DL
Sbjct: 97  VLVGLALFLTMFVMAPVFDRINSQALQPYLNEQIPAQEALQRAEVPLKAFMLAQTRTSDL 156

Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
            LF+ ++    + TDI+  +     IL+P+F+ SEL+ +F+IGF+I +PFLIID++V+++
Sbjct: 157 ELFVRLS----KRTDISGPEATPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSV 212

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +MAMGMMML P  ISLPFK++ FVL+DGW+L++  L  SF
Sbjct: 213 LMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLAGSF 252


>gi|170725983|ref|YP_001760009.1| flagellar biosynthesis protein FliP [Shewanella woodyi ATCC 51908]
 gi|169811330|gb|ACA85914.1| flagellar biosynthetic protein FliP [Shewanella woodyi ATCC 51908]
          Length = 248

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 89/232 (38%), Positives = 140/232 (60%), Gaps = 7/232 (3%)

Query: 17  VFAKSSLHDVMNIPADLSISTW---IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73
           +FA+  +   + +       T     ++   + T LS  P +LIM+T F R IIV SILR
Sbjct: 19  IFAQDGILPAVTVSTGADGDTQYSVTMQILLLMTALSFLPAMLIMLTSFTRIIIVLSILR 78

Query: 74  TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133
             +G+   P N V+I +++F+TF++MSP  D+  +  ++P MN  +    A     EP  
Sbjct: 79  QAIGLQQTPSNQVLIGMSMFLTFFIMSPVFDKVYDSAVKPYMNESMNIEQAFHVGKEPIK 138

Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
            FM   TR  DL  F++++       +I   D     ++IP+F+ SEL+ +F+IGF++ +
Sbjct: 139 EFMLAQTRVTDLETFVEISG----YQNINSVDEAPMSVIIPAFITSELKTAFQIGFMLFV 194

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           PFL++D++VA+I+MAMGMMML P  +SLPFK++ FVL+DGWSL++  L  SF
Sbjct: 195 PFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVMGTLANSF 246


>gi|291326353|ref|ZP_06124191.2| flagellar biosynthetic protein FliP [Providencia rettgeri DSM 1131]
 gi|291314687|gb|EFE55140.1| flagellar biosynthetic protein FliP [Providencia rettgeri DSM 1131]
          Length = 215

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 95/215 (44%), Positives = 140/215 (65%), Gaps = 4/215 (1%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
                 +  V+T    T+L   P LL+M+T F R IIV  +LR  +G  S PPN V++ L
Sbjct: 3   DGGQTWSLPVQTLLFLTLLGFIPALLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVLLGL 62

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           ALF+TF+VMSP  D+      QP   ++I+  TA+++   P   FM   TRE DL+LF  
Sbjct: 63  ALFLTFFVMSPVADQVYREAYQPFSEDKISLETALEKGTAPLRTFMLGQTRESDLALFAR 122

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           +A       +I +   +  RIL+P+F+ SEL+ +F+IGF I +PFLIID++VA+++MA+G
Sbjct: 123 IAKVG----EIQEAKDVPLRILVPAFITSELKTAFQIGFTIFIPFLIIDLVVASVLMALG 178

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMM+PP ++SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 179 MMMVPPATVSLPFKLMLFVLVDGWQLLLGSLSQSF 213


>gi|291617858|ref|YP_003520600.1| FliP [Pantoea ananatis LMG 20103]
 gi|291152888|gb|ADD77472.1| FliP [Pantoea ananatis LMG 20103]
 gi|327394275|dbj|BAK11697.1| flagellar biosynthetic protein FliP precursor [Pantoea ananatis
           AJ13355]
          Length = 244

 Score =  202 bits (514), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 96/229 (41%), Positives = 150/229 (65%), Gaps = 6/229 (2%)

Query: 19  AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
           A + L  +++ P      +W   V+T    T L+  P +L+M+T F R IIVF +LR  +
Sbjct: 18  AHAQLPGLVSQPLANGGQSWSLPVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNAL 77

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G  S PPN V++ L LF+TF++M+PT D+  +    P   ++I+   AI + A+P   FM
Sbjct: 78  GTPSAPPNQVLLGLTLFLTFFIMAPTFDKIYQDAYLPFSQDKISMDVAIDKGAQPLREFM 137

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
              TRE DL+LF  +A++      I   + +  RIL+P+++ SEL+ +F+IGF + +PFL
Sbjct: 138 LRQTREADLALFARLANT----APIAGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFL 193

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IID++VA+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 194 IIDLVVASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 242


>gi|332673532|gb|AEE70349.1| flagellar biosynthetic protein FliP [Helicobacter pylori 83]
          Length = 248

 Score =  202 bits (514), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 103/227 (45%), Positives = 156/227 (68%), Gaps = 4/227 (1%)

Query: 19  AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           A  S++  +N P D       +    + T+L +AP L++++T F R I+VFS LRT +G 
Sbjct: 23  ALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGT 82

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
              PP  +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++   PF  FM  
Sbjct: 83  QQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSTLPFKEFMLK 142

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
           NTREKDL+LF  + +  +  T     D +   +LIP+FMISEL+ +F+IGFL+ LPFL+I
Sbjct: 143 NTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVI 198

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           DM++++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LL ENLV SF
Sbjct: 199 DMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 245


>gi|315586640|gb|ADU41021.1| flagellar biosynthetic protein FliP [Helicobacter pylori 35A]
          Length = 248

 Score =  202 bits (514), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 105/227 (46%), Positives = 157/227 (69%), Gaps = 4/227 (1%)

Query: 19  AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           A  S++  +N P D       +    + T+L +AP L++++T F R I+VFS LRT +G 
Sbjct: 23  ALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGT 82

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
              PP  +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ A PF  FM  
Sbjct: 83  QQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLK 142

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
           NTREKDL+LF  + +  +  T     D +   +LIP+FMISEL+ +F+IGFL+ LPFL+I
Sbjct: 143 NTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVI 198

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           DM++++I+MAMGMMMLPP  ISLPFKV+ F+L+DG++LL ENLV SF
Sbjct: 199 DMVISSILMAMGMMMLPPVMISLPFKVLVFILVDGFNLLTENLVASF 245


>gi|257866390|ref|ZP_05646043.1| flagellar biosynthesis protein P [Enterococcus casseliflavus EC30]
 gi|257871301|ref|ZP_05650954.1| flagellar biosynthesis protein P [Enterococcus gallinarum EG2]
 gi|257873094|ref|ZP_05652747.1| flagellar biosynthesis protein P [Enterococcus casseliflavus EC10]
 gi|257876003|ref|ZP_05655656.1| flagellar biosynthesis protein P [Enterococcus casseliflavus EC20]
 gi|257800348|gb|EEV29376.1| flagellar biosynthesis protein P [Enterococcus casseliflavus EC30]
 gi|257805465|gb|EEV34287.1| flagellar biosynthesis protein P [Enterococcus gallinarum EG2]
 gi|257807258|gb|EEV36080.1| flagellar biosynthesis protein P [Enterococcus casseliflavus EC10]
 gi|257810169|gb|EEV38989.1| flagellar biosynthesis protein P [Enterococcus casseliflavus EC20]
          Length = 271

 Score =  202 bits (514), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 104/248 (41%), Positives = 157/248 (63%), Gaps = 8/248 (3%)

Query: 1   MIRYCFFALFLVTPELVFAKSS---LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLI 57
           M    F +L L  P+  FA  +      + N+ ++ + S+  + TF + T+LS+ P+LLI
Sbjct: 28  MAAVLFSSLML--PQTAFALDTEDVSSTINNLLSNGNGSSDTINTFLLLTLLSLLPVLLI 85

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           M+T F R I+V S +R+ +G    PPN V+I LALF+TF++M P      +  I+P    
Sbjct: 86  MMTSFTRIIMVLSFVRSSLGTQQNPPNQVLIGLALFLTFFIMKPVYTDVYQQAIEPFDRQ 145

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
           +I++  A  R  +    FM   TREKD++LF   A +         +D +   +++P+F+
Sbjct: 146 EISQAEAFDRSEKRIKAFMMVQTREKDIALF---AEADGETEKYHSSDDVPLTVMVPAFI 202

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
           ISELR +F IGFLI +PFLIID++V++I+M+MGMMML P  ISLPFK++ FVL+DGW L+
Sbjct: 203 ISELRTAFSIGFLIFIPFLIIDLVVSSILMSMGMMMLSPIMISLPFKILLFVLVDGWYLI 262

Query: 238 VENLVKSF 245
           VE+L+KSF
Sbjct: 263 VESLIKSF 270


>gi|167034912|ref|YP_001670143.1| flagellar biosynthesis protein FliP [Pseudomonas putida GB-1]
 gi|166861400|gb|ABY99807.1| flagellar biosynthetic protein FliP [Pseudomonas putida GB-1]
          Length = 251

 Score =  202 bits (514), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 95/220 (43%), Positives = 139/220 (63%), Gaps = 4/220 (1%)

Query: 26  VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
           + N        +  ++   I T LS  P  +I++T F R IIVFSILR  +G+   P N 
Sbjct: 33  LSNTADGQQEYSVSLQILLIMTALSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQ 92

Query: 86  VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145
           ++  +ALF+T ++M+P  DR  +  +QP +  Q+T   AI +   P   FM   TR+ DL
Sbjct: 93  LLTGMALFLTMFIMAPVFDRVNQDALQPYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDL 152

Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
            LFM ++    + TDI   D +   IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA++
Sbjct: 153 DLFMRLS----KRTDIAGPDQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASV 208

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +MAMGMMML P  ISLPFK++ FVL+DGW+L++  L  SF
Sbjct: 209 LMAMGMMMLSPLIISLPFKIMLFVLVDGWALIMGTLASSF 248


>gi|317051545|ref|YP_004112661.1| flagellar biosynthetic protein FliP [Desulfurispirillum indicum S5]
 gi|316946629|gb|ADU66105.1| flagellar biosynthetic protein FliP [Desulfurispirillum indicum S5]
          Length = 253

 Score =  202 bits (514), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 97/220 (44%), Positives = 149/220 (67%), Gaps = 4/220 (1%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
           +   +D S     ++   + TIL++AP +L+++T F R +IV S LR  MG    PPN V
Sbjct: 36  VESSSDPSNVAVTLQILFLLTILTLAPSILVLMTSFVRILIVLSFLRQAMGTMQSPPNQV 95

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           ++SLALF+TFY+M PT  +  ++ +QP +N +I    A+   A P   FM  +TREKDL+
Sbjct: 96  LVSLALFLTFYIMMPTFQQINDVALQPYLNQEIGTQEALDNAARPLSEFMLKHTREKDLA 155

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
           LF+  +      T     + + +  L+P+F+ISEL+ +F++GF+I +PFLIIDM+VA+ +
Sbjct: 156 LFVHFSGDERPAT----KEDVSFFTLVPAFVISELKTAFQMGFMIFIPFLIIDMVVASTL 211

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           M+MGMMMLPP  IS+PFKVI FVL+DGW+L++ +L++SF+
Sbjct: 212 MSMGMMMLPPAMISMPFKVILFVLVDGWNLVMSSLLRSFV 251


>gi|225849157|ref|YP_002729321.1| flagellar biosynthetic protein FliP [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644291|gb|ACN99341.1| flagellar biosynthetic protein FliP [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 239

 Score =  202 bits (514), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 101/239 (42%), Positives = 155/239 (64%), Gaps = 6/239 (2%)

Query: 8   ALFLVTPELVFAKSSLHDVMNIP-ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
           ALF++    VF   S  D++     + +     ++   + T+LSIAP +LI +T F R +
Sbjct: 4   ALFILLSLFVFFDFSQADLLTETLQNFNRLDTSLKILLLITVLSIAPAILISMTSFVRIV 63

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IV S+LR  +G+ + PPN VI+ LALF+TF++M P  D+  E+ + P +  QI++  AI+
Sbjct: 64  IVLSLLRHALGIPTAPPNQVIVGLALFLTFFIMKPVFDKINEVSLTPYLKKQISDVQAIE 123

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
              +P   FM  NTR++DL LF+D++          K + +    LIP+FMISE++ +FE
Sbjct: 124 NAKQPLKEFMLKNTRKEDLKLFIDISKEKP-----QKLEDVSMTTLIPAFMISEIKTAFE 178

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           I F+I LPF++ID +VA+I+M+MGMMM+PP  ISLPFK++ FVL DGW LL + L++S+
Sbjct: 179 IVFIIYLPFIVIDFVVASILMSMGMMMVPPMFISLPFKLMLFVLADGWELLTKALIQSY 237


>gi|297617154|ref|YP_003702313.1| flagellar biosynthetic protein FliP [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144991|gb|ADI01748.1| flagellar biosynthetic protein FliP [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 259

 Score =  202 bits (514), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 97/249 (38%), Positives = 152/249 (61%), Gaps = 8/249 (3%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLH----DVMNIPADLSISTWIVRTFGIFTILSIAPILL 56
           +  +    +  +T E    +  +     ++       +  +  ++   + TILS+AP +L
Sbjct: 14  LAAFLIMVVVCLTGEAQAQQFQIPQVSINIGGESQGETGVSQALQILALLTILSLAPAIL 73

Query: 57  IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
           I++T F R I+V S +R+ +    +PPN +++ LALF+TF+VM+PT     E  +QP   
Sbjct: 74  ILLTSFTRIIVVLSFVRSALATQQMPPNQILVGLALFLTFFVMAPTWKEVNEKALQPYFQ 133

Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
            +IT+  A  R   P   FM   TREKDL+LF+ MA      T       +   +LIP+F
Sbjct: 134 GEITQDQAFTRGMAPLRTFMFKQTREKDLALFVKMAKIQRPRTYG----DVPNYVLIPAF 189

Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
           +ISEL+ +FEIGF+I +PFL+IDM+V++ +M+MGM+MLPP  ISLPFK++ FVL+DGW+L
Sbjct: 190 VISELKTAFEIGFIIFVPFLVIDMVVSSALMSMGMLMLPPMMISLPFKILLFVLVDGWNL 249

Query: 237 LVENLVKSF 245
           +V +L+ SF
Sbjct: 250 VVNSLLMSF 258


>gi|15611692|ref|NP_223343.1| flagellar biosynthesis protein FliP [Helicobacter pylori J99]
 gi|4155178|gb|AAD06205.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
          Length = 248

 Score =  202 bits (514), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 103/227 (45%), Positives = 157/227 (69%), Gaps = 4/227 (1%)

Query: 19  AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           A  S++  +N P+D       +    + T+L +AP L++++T F R I+VFS LRT +G 
Sbjct: 23  ALPSVNLSLNAPSDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGT 82

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
              PP  +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++   PF  FM  
Sbjct: 83  QQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSTLPFKEFMLK 142

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
           NTREKDL+LF  + +  +  T     D +   +LIP+FMISEL+ +F+IGFL+ LPFL+I
Sbjct: 143 NTREKDLALFFRIRNLPNPKT----PDDVSLSVLIPAFMISELKTAFQIGFLLYLPFLVI 198

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           DM++++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LL ENLV SF
Sbjct: 199 DMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 245


>gi|299068762|emb|CBJ40002.1| fliP: flagellar biosynthesis protein. fliP/mopC/spaP family
           [Ralstonia solanacearum CMR15]
          Length = 249

 Score =  202 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 99/229 (43%), Positives = 140/229 (61%), Gaps = 5/229 (2%)

Query: 17  VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
             A+  L  +       S S   V+T    T L   P +L+M++ F R IIV S+LR  +
Sbjct: 24  AQAQPGLPLLTGTAGGQSYSL-PVQTLVFLTSLGFLPAILLMMSSFTRIIIVLSLLRHAL 82

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G  + PPN V+I LALF+TF+VMSP LD+       PL +++I+   A+   A P   FM
Sbjct: 83  GTQTTPPNQVLIGLALFLTFFVMSPVLDKVYTDAYLPLRDSKISVEQALDTAATPLRQFM 142

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
              TRE DL+LF  M +       I   D +  R LIP+F+ SEL+ SF+IGF I +PFL
Sbjct: 143 LKQTREPDLALFAKMGNLP----PIASPDQVPMRALIPAFVTSELKTSFQIGFAIFIPFL 198

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +ID++VA ++M+MGMMM+ P+  SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 199 VIDIVVAAVLMSMGMMMVTPSIFSLPFKIMLFVLVDGWHLLLGSLAQSF 247


>gi|119775422|ref|YP_928162.1| flagellar biosynthesis protein FliP [Shewanella amazonensis SB2B]
 gi|119767922|gb|ABM00493.1| flagellar biosynthetic protein FliP [Shewanella amazonensis SB2B]
          Length = 249

 Score =  202 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 89/245 (36%), Positives = 142/245 (57%), Gaps = 4/245 (1%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           M+ +    +  +             V   P   +  +  ++   + T LS  P ++IM+T
Sbjct: 7   MLFWILAGMASLPAFGADGVLPAVTVTTTPDGGTQYSVTLQILMLMTALSFLPAMVIMLT 66

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R I+  S+LR  +G+   P N V+I L+LFMTF++M+P  D+  E G++P M   + 
Sbjct: 67  SFTRIIVTLSLLRQAIGLQQAPSNQVLIGLSLFMTFFIMAPVFDKIYEQGVKPYMEETLP 126

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A +R  EP   FM +  R  DL  F+++A       +I   +     ++IP+F+ SE
Sbjct: 127 IDQAFERGKEPLKAFMLSQVRITDLETFVNIAG----YDNIKSPEEAPMTVIIPAFITSE 182

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +F+IGF++ +PFL+ID++VA+I+MAMGMMML P  +SLPFK++ FVL+DGWSL++  
Sbjct: 183 LKTAFQIGFMLFVPFLVIDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVMGT 242

Query: 241 LVKSF 245
           L  SF
Sbjct: 243 LANSF 247


>gi|15596643|ref|NP_250137.1| flagellar biosynthesis protein FliP [Pseudomonas aeruginosa PAO1]
 gi|107100880|ref|ZP_01364798.1| hypothetical protein PaerPA_01001910 [Pseudomonas aeruginosa PACS2]
 gi|116049391|ref|YP_791806.1| flagellar biosynthesis protein FliP [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218892681|ref|YP_002441550.1| flagellar biosynthesis protein FliP [Pseudomonas aeruginosa LESB58]
 gi|254234545|ref|ZP_04927868.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa C3719]
 gi|254239796|ref|ZP_04933118.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa 2192]
 gi|296390187|ref|ZP_06879662.1| flagellar biosynthesis protein FliP [Pseudomonas aeruginosa PAb1]
 gi|313106445|ref|ZP_07792676.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa 39016]
 gi|12230927|sp|Q51468|FLIP_PSEAE RecName: Full=Flagellar biosynthetic protein fliP
 gi|9947397|gb|AAG04835.1|AE004574_6 flagellar biosynthetic protein FliP [Pseudomonas aeruginosa PAO1]
 gi|115584612|gb|ABJ10627.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126166476|gb|EAZ51987.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa C3719]
 gi|126193174|gb|EAZ57237.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa 2192]
 gi|218772909|emb|CAW28721.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa LESB58]
 gi|310879178|gb|EFQ37772.1| flagellar biosynthetic protein FliP [Pseudomonas aeruginosa 39016]
          Length = 255

 Score =  202 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 94/220 (42%), Positives = 138/220 (62%), Gaps = 4/220 (1%)

Query: 26  VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
           V          +  ++   I T LS  P  ++++T F R IIVFSILR  +G+ S P N 
Sbjct: 37  VTTNGQGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQ 96

Query: 86  VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145
           V++ LALF+T +VM+P  D+     +QP +N QI    A+Q+   P   FM   TR  DL
Sbjct: 97  VLVGLALFLTMFVMAPVFDKINSQALQPYLNEQIPAQEALQKAEVPLKAFMLAQTRTSDL 156

Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
            LF+ ++    + TDI   +     IL+P+F+ SEL+ +F+IGF+I +PFLIID++V+++
Sbjct: 157 ELFVRLS----KRTDIGSPEATPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSV 212

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +MAMGMMML P  ISLPFK++ FVL+DGW+L++  L  SF
Sbjct: 213 LMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLAGSF 252


>gi|323703181|ref|ZP_08114834.1| flagellar biosynthetic protein FliP [Desulfotomaculum nigrificans
           DSM 574]
 gi|323531840|gb|EGB21726.1| flagellar biosynthetic protein FliP [Desulfotomaculum nigrificans
           DSM 574]
          Length = 270

 Score =  202 bits (513), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 94/248 (37%), Positives = 150/248 (60%), Gaps = 10/248 (4%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTW------IVRTFGIFTILSIAPILLI 57
                LF++      + + L  + NI  ++  ++        V+     ++L++ P  LI
Sbjct: 26  LILIPLFILMLPSGVSAAPLIPIPNINLNVETASQPQQVVDSVKLLIFLSLLAMVPAFLI 85

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           M+T F R ++V S LR+ +G    PPN V++ LALF+T ++MSP      +  IQP + N
Sbjct: 86  MLTSFTRIVVVLSFLRSALGTQQTPPNQVLVGLALFLTIFIMSPVYKDMNKNAIQPYLAN 145

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
           Q+T   A  +  +P   FM   TREKDL LF+ +A            + +   +L+P+F+
Sbjct: 146 QLTYEQAADKAIQPLKAFMARQTREKDLGLFISVAKMDKPK----NINEVPMSVLVPAFV 201

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
           ISEL+ +F+IGF+I +PFL+IDM+VA+ +M+MGM MLPP  +SLPFK++ FV++DGW L+
Sbjct: 202 ISELKTAFQIGFIIFVPFLVIDMVVASTLMSMGMFMLPPVMVSLPFKLLLFVMVDGWYLV 261

Query: 238 VENLVKSF 245
           V++LV+SF
Sbjct: 262 VKSLVESF 269


>gi|283853451|ref|ZP_06370695.1| flagellar biosynthetic protein FliP [Desulfovibrio sp. FW1012B]
 gi|283571171|gb|EFC19187.1| flagellar biosynthetic protein FliP [Desulfovibrio sp. FW1012B]
          Length = 262

 Score =  202 bits (513), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 94/245 (38%), Positives = 144/245 (58%), Gaps = 7/245 (2%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI---VRTFGIFTILSIAPILLIMVT 60
                L L       A+ +    +N+ A  +    +   +      T+LS+AP  ++ VT
Sbjct: 20  LVLAGLVLFVAGPALAQDAPTLSLNLAAGQNQPERVSTLLEILFALTVLSLAPSFILTVT 79

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R IIVFS LR  MG+  VPP  ++ SLA+F+T  +M PT  +  +  +QP +  +I 
Sbjct: 80  SFTRIIIVFSFLRQAMGVPQVPPTQILASLAIFLTCVIMYPTGKQINDDALQPYLEERIG 139

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
            T A+++   P   F+  +TREKDLS+F  +               +   +L   FMISE
Sbjct: 140 FTEALKKAEAPLREFLFKHTREKDLSVFYTVTKMERPKDKA----EVPTMMLAAGFMISE 195

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +F IGFLI +PFLI+DM++++I++AMGMMMLPP +I++PFK++ FVL+DGW+L+V +
Sbjct: 196 LKTAFTIGFLIYIPFLILDMVISSILLAMGMMMLPPATIAMPFKLLLFVLVDGWALMVGS 255

Query: 241 LVKSF 245
           LV SF
Sbjct: 256 LVNSF 260


>gi|224370774|ref|YP_002604938.1| FliP [Desulfobacterium autotrophicum HRM2]
 gi|223693491|gb|ACN16774.1| FliP [Desulfobacterium autotrophicum HRM2]
          Length = 258

 Score =  202 bits (513), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 93/242 (38%), Positives = 143/242 (59%), Gaps = 4/242 (1%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
           +    L  +     F   S +  +           ++    + TIL++AP +LI++T F 
Sbjct: 19  FLGLVLPSMVQGATFPIPSFNFGIGQAQGPEDVAVVLEIIALLTILALAPAILILMTPFT 78

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
           R I+VF  LR  +G  S PPN V++ LALF+TF+++ P      +  + P +  QI    
Sbjct: 79  RIIVVFHFLRQAIGTQSSPPNQVVVGLALFLTFFIIKPVALDVYQNALNPYLERQIDYNE 138

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
           A      P   F+  NTRE D++LF+  A  +  +T     + +   +LIP+++ISEL+ 
Sbjct: 139 AFTAAQVPIRNFLLVNTREADIALFVKGAGVAKPDT----REDVSLMLLIPAYVISELKT 194

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
           +F IGF+I +PFL+IDM+VA++++AMGMMMLPP  ISLPFK++ FVL+DGW LL  +L+K
Sbjct: 195 AFIIGFVIYVPFLVIDMVVASVLLAMGMMMLPPVMISLPFKLMLFVLVDGWHLLTGSLLK 254

Query: 244 SF 245
           SF
Sbjct: 255 SF 256


>gi|83747643|ref|ZP_00944679.1| FliP [Ralstonia solanacearum UW551]
 gi|207739724|ref|YP_002258117.1| flagellar biosynthetic protein flip [Ralstonia solanacearum
           IPO1609]
 gi|83725695|gb|EAP72837.1| FliP [Ralstonia solanacearum UW551]
 gi|206593106|emb|CAQ60012.1| flagellar biosynthetic protein flip [Ralstonia solanacearum
           IPO1609]
          Length = 249

 Score =  202 bits (513), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 99/229 (43%), Positives = 140/229 (61%), Gaps = 5/229 (2%)

Query: 17  VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
             A+  L  +       S S   V+T    T L   P +L+M++ F R IIV S+LR  +
Sbjct: 24  AQAQPGLPLLTGAAGGQSYSL-PVQTLVFLTSLGFLPAILLMMSSFTRIIIVLSLLRHAL 82

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G  + PPN V+I LALF+TF+VMSP LD+       PL +++I+   A+   A P   FM
Sbjct: 83  GTQTTPPNQVLIGLALFLTFFVMSPVLDKVYTDAYVPLRDSKISVEQALDTAATPLRQFM 142

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
              TRE DL+LF  M +       I   D +  R LIP+F+ SEL+ SF+IGF I +PFL
Sbjct: 143 LKQTREPDLALFAKMGNLP----PIASPDQVPMRALIPAFVTSELKTSFQIGFAIFIPFL 198

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +ID++VA ++M+MGMMM+ P+  SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 199 VIDIVVAAVLMSMGMMMVTPSIFSLPFKIMLFVLVDGWHLLLGSLAQSF 247


>gi|308182827|ref|YP_003926954.1| flagellar biosynthesis protein FliP [Helicobacter pylori PeCan4]
 gi|308065012|gb|ADO06904.1| flagellar biosynthesis protein FliP [Helicobacter pylori PeCan4]
          Length = 248

 Score =  202 bits (513), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 104/227 (45%), Positives = 158/227 (69%), Gaps = 4/227 (1%)

Query: 19  AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           A  S++  +N P+D       +    + T+L +AP L++++T F R I+VFS LRT +G 
Sbjct: 23  ALPSVNLSLNAPSDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGT 82

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
              PP  +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ A PF  FM  
Sbjct: 83  QQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLK 142

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
           NTREKDL+LF  + +  +  T     D +   +LIP+FMISEL+ +F+IGFL+ LPFL+I
Sbjct: 143 NTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVI 198

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           DM++++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LL ENLV SF
Sbjct: 199 DMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 245


>gi|317010902|gb|ADU84649.1| flagellar biosynthesis protein FliP [Helicobacter pylori
           SouthAfrica7]
          Length = 248

 Score =  202 bits (513), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 107/242 (44%), Positives = 161/242 (66%), Gaps = 4/242 (1%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
           +  FAL         A  S++  +N P D       +    + T+L +AP L++++T F 
Sbjct: 8   FLIFALIGPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFI 67

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
           R I+VFS LRT +G    PP  +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T 
Sbjct: 68  RLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTE 127

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
           A ++ A PF  FM  NTREKDL+LF  + +  +  T     D +   +LIP+FMISEL+ 
Sbjct: 128 AFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKT----PDDVSLSVLIPAFMISELKT 183

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
           +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LL ENLV 
Sbjct: 184 AFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVA 243

Query: 244 SF 245
           SF
Sbjct: 244 SF 245


>gi|160939626|ref|ZP_02086974.1| hypothetical protein CLOBOL_04518 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437417|gb|EDP15181.1| hypothetical protein CLOBOL_04518 [Clostridium bolteae ATCC
           BAA-613]
          Length = 258

 Score =  202 bits (513), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 89/247 (36%), Positives = 143/247 (57%), Gaps = 2/247 (0%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           +I    FA       +    + +   +   +       ++    +F  L++ P L+IM+T
Sbjct: 11  IIGAGTFAWMWAPGAVTSYATDVSLTLQGSSGTGKPMDMLDIMFLFLFLAVVPSLIIMMT 70

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R +IV S LR  +G    PPN +++ LALF+T ++MSP +        QP    QIT
Sbjct: 71  SFTRIVIVLSFLRNALGTQQSPPNQILVGLALFLTLFIMSPVIASVNTQAYQPYREGQIT 130

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND--HIEYRILIPSFMI 178
              A +R  EP   FM   T +K L LF+ ++ +   +    +     +    ++PSF++
Sbjct: 131 REQAFERAQEPMKEFMLKQTEKKSLDLFLSISKAQPPDISQGQEGYMKLGLTTIVPSFIL 190

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL ++F +GFLI +PFLIID++V++ +M+MGM+MLPPT I+LPFK++ FVL+DGWSL++
Sbjct: 191 SELNKAFTMGFLIFIPFLIIDLVVSSTLMSMGMVMLPPTMIALPFKIMMFVLVDGWSLVI 250

Query: 239 ENLVKSF 245
           + LV+SF
Sbjct: 251 KTLVQSF 257


>gi|194014385|ref|ZP_03053002.1| flagellar biosynthetic protein FliP [Bacillus pumilus ATCC 7061]
 gi|194013411|gb|EDW22976.1| flagellar biosynthetic protein FliP [Bacillus pumilus ATCC 7061]
          Length = 221

 Score =  201 bits (512), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 100/221 (45%), Positives = 149/221 (67%), Gaps = 5/221 (2%)

Query: 25  DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
           D+ N     +IST  VR   + T+ S+AP +LI++TCF R +IV S +RT +   S+PPN
Sbjct: 6   DLFNSSGAGNIST-SVRLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATNSMPPN 64

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
            V++ LALF+TF++M+PT     +  + PL+N+ IT   A ++   P   FM  +TR+KD
Sbjct: 65  QVLVGLALFLTFFIMAPTFSEINKEALTPLLNDDITLNQAYEKAEVPIKEFMSKHTRQKD 124

Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
           L+LF+  A              I    ++P+F ISEL+ +F+IGF+I +PFLIIDM+VA+
Sbjct: 125 LALFLSYAKIDTPE----SIKDIPLTAMVPAFAISELKTAFQIGFMIFIPFLIIDMVVAS 180

Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++M+MGMMMLPP  ISLPFK++ FVL+DGW L+V++L++SF
Sbjct: 181 VLMSMGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLLQSF 221


>gi|313673292|ref|YP_004051403.1| flagellar biosynthetic protein flip [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312940048|gb|ADR19240.1| flagellar biosynthetic protein FliP [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 244

 Score =  201 bits (512), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 99/208 (47%), Positives = 144/208 (69%), Gaps = 4/208 (1%)

Query: 39  IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
            ++   + TILSIAP +LIM+T F R IIVFS LR+ MG    PPN V+I LALF+TF++
Sbjct: 41  TLQIIFLITILSIAPAILIMMTSFTRIIIVFSFLRSAMGTQQTPPNQVLIGLALFLTFFI 100

Query: 99  MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
           MSP      +  + P ++ +I  T A++   +P   FM  NTR+KD+  F+ ++ S    
Sbjct: 101 MSPVFSEMNKNALAPYLDGKIAFTDALKEAKKPLRKFMLENTRKKDIMTFLQVSKSPMPK 160

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
           T     D I   +L+P+F+ SEL+ +FEIGFL+ LPFLIID +V++++++MGMMMLPP  
Sbjct: 161 T----VDDIPDMVLLPAFVTSELQTAFEIGFLLFLPFLIIDFVVSSVLLSMGMMMLPPVM 216

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           IS+PFK++ FVL+DGW+L+V +LVKSF+
Sbjct: 217 ISMPFKILLFVLVDGWNLIVMSLVKSFM 244


>gi|295399824|ref|ZP_06809805.1| flagellar biosynthetic protein FliP [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312111664|ref|YP_003989980.1| flagellar biosynthetic protein FliP [Geobacillus sp. Y4.1MC1]
 gi|294978227|gb|EFG53824.1| flagellar biosynthetic protein FliP [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311216765|gb|ADP75369.1| flagellar biosynthetic protein FliP [Geobacillus sp. Y4.1MC1]
          Length = 222

 Score =  201 bits (512), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 92/195 (47%), Positives = 137/195 (70%), Gaps = 4/195 (2%)

Query: 51  IAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMG 110
           IAP +LIM+TCF R IIV S +RT +G   +PPN V+I LA+F+TF++M+PT     +  
Sbjct: 31  IAPGILIMMTCFTRIIIVLSFVRTSLGTQQMPPNQVLIGLAMFLTFFIMAPTFKEINDQA 90

Query: 111 IQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYR 170
           +QPL + +I    A +R + P   FM  +TR+KDL+LF+  + +    T       I   
Sbjct: 91  LQPLFSEKINLEQAYERASVPIKEFMSKHTRQKDLALFLSYSGAEKPKT----VQDIPLS 146

Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230
            L+P+F ISE++ +F++G +I +PFL+IDMIVA+++M+MGMMMLPP  ISLPFK++ FVL
Sbjct: 147 TLVPAFAISEIKTAFQMGVMIFIPFLVIDMIVASVLMSMGMMMLPPVMISLPFKILLFVL 206

Query: 231 IDGWSLLVENLVKSF 245
           +DGW L+V++L++SF
Sbjct: 207 VDGWYLVVKSLLESF 221


>gi|148553144|ref|YP_001260726.1| flagellar biosynthesis protein FliP [Sphingomonas wittichii RW1]
 gi|148498334|gb|ABQ66588.1| flagellar biosynthetic protein FliP [Sphingomonas wittichii RW1]
          Length = 278

 Score =  201 bits (512), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 89/236 (37%), Positives = 140/236 (59%), Gaps = 4/236 (1%)

Query: 10  FLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVF 69
              T       +    +  I  D    +  ++   + ++L++ P L++M++ F R IIV 
Sbjct: 45  LASTAGPAQTGALDRAMTTIAGDGRPLSLSLQILVLMSLLTVLPSLVLMMSSFTRIIIVL 104

Query: 70  SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129
           S+LR  +G+   PPN V++ LA+F++ +VM P++D+      +P    QIT   AI R  
Sbjct: 105 SLLRQALGLQQTPPNQVLVGLAMFLSLFVMRPSIDQINADAFKPYGAGQITIEEAITRSG 164

Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189
                FM   TR+ DL LF D+A +        +   I + IL+P+F+ SEL+ +F+IGF
Sbjct: 165 AVLHRFMVLQTRQTDLKLFADLAKAPK----FARPADIPFSILLPAFVTSELKTAFQIGF 220

Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LI LPFLIID++VA+ +M++GMMML P  IS+PFK++ FVL+DGW+L + +L  SF
Sbjct: 221 LIFLPFLIIDLVVASTLMSLGMMMLSPAIISMPFKLLLFVLVDGWALTMGSLAASF 276


>gi|24052334|gb|AAN43540.1| flagellar biosynthesis [Shigella flexneri 2a str. 301]
 gi|313650170|gb|EFS14583.1| flagellar biosynthetic protein FliP [Shigella flexneri 2a str.
           2457T]
 gi|332757282|gb|EGJ87619.1| flagellar biosynthetic protein FliP [Shigella flexneri 2747-71]
 gi|332757514|gb|EGJ87849.1| flagellar biosynthetic protein FliP [Shigella flexneri K-671]
 gi|332766686|gb|EGJ96890.1| flagellar biosynthetic protein FliP [Shigella flexneri 2930-71]
 gi|333017554|gb|EGK36866.1| flagellar biosynthetic protein FliP [Shigella flexneri K-304]
          Length = 204

 Score =  201 bits (512), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 91/206 (44%), Positives = 141/206 (68%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++T    T L+  P +L+M+T F R IIVF +LR  +G  S PPN V++ LALF+TF++M
Sbjct: 1   MQTLVFITSLTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIM 60

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP +D+      QP    +I+   A+++ A+P   FM   TRE DL LF  +A++     
Sbjct: 61  SPVIDKIYVDAYQPFSEEKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTG---- 116

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +   + +  RIL+P+++ SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I
Sbjct: 117 PLQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATI 176

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           +LPFK++ FVL+DGW LLV +L +SF
Sbjct: 177 ALPFKLMLFVLVDGWQLLVGSLAQSF 202


>gi|153828653|ref|ZP_01981320.1| flagellar biosynthetic protein FliP [Vibrio cholerae 623-39]
 gi|148875924|gb|EDL74059.1| flagellar biosynthetic protein FliP [Vibrio cholerae 623-39]
          Length = 299

 Score =  201 bits (512), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 89/206 (43%), Positives = 135/206 (65%), Gaps = 5/206 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   + T+L   P ++I++T F R ++V SILR  MG+   P N VII +ALF+TF++M
Sbjct: 97  LQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFIM 156

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +P  ++  E  +QP +N QIT   A     EP   FM   TR  DL  F++M+       
Sbjct: 157 APVFNQINEQAVQPYLNEQITALQAFDLAQEPLKAFMLKQTRVNDLETFVEMSG-----A 211

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGMMML P  +
Sbjct: 212 QVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGMMMLSPMIV 271

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 272 SLPFKLMLFVLVDGWNLILSTLAGSF 297


>gi|152979946|ref|YP_001353121.1| flagellar biosynthesis protein FliP [Janthinobacterium sp.
           Marseille]
 gi|151280023|gb|ABR88433.1| Flip component of flagellar biosynthesis pathway [Janthinobacterium
           sp. Marseille]
          Length = 252

 Score =  201 bits (512), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 92/233 (39%), Positives = 143/233 (61%), Gaps = 6/233 (2%)

Query: 15  ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIA--PILLIMVTCFPRFIIVFSIL 72
             +  ++ L    + PA     T+ +    +  +  ++  P +L+M+T F R IIV S+L
Sbjct: 23  AAMAQQAGLPAFTSSPAPGGGQTYSLSLQTLLLLTGLSFLPAVLLMMTSFTRIIIVLSLL 82

Query: 73  RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132
           R  +G  S PPN VII L+LF+T +VMSP LD+      QP   N+I    A+ +   P 
Sbjct: 83  RQALGTQSSPPNQVIIGLSLFLTLFVMSPVLDKIYVDAYQPFSQNKIQMQEALDKAVAPL 142

Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192
             FM   TRE DL+L++ ++       ++   + I  RIL+P+F+ SEL+ +F+I F I 
Sbjct: 143 KTFMIKQTRESDLALYVKLSKGP----ELQGPEDIPLRILVPAFVTSELKTAFQISFAIF 198

Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +PFLIIDM+VA+++M+MGMMM+ P  ++LPFK++ FVL+DGW LL+ +L +SF
Sbjct: 199 IPFLIIDMVVASVLMSMGMMMVSPAIVALPFKLMLFVLVDGWQLLIGSLAQSF 251


>gi|300696945|ref|YP_003747606.1| fliP: flagellar biosynthesis protein. fliP/mopC/spaP family
           [Ralstonia solanacearum CFBP2957]
 gi|299073669|emb|CBJ53189.1| fliP: flagellar biosynthesis protein. fliP/mopC/spaP family
           [Ralstonia solanacearum CFBP2957]
          Length = 249

 Score =  201 bits (512), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 99/229 (43%), Positives = 140/229 (61%), Gaps = 5/229 (2%)

Query: 17  VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
             A+  L  +       S S   V+T    T L   P +L+M++ F R IIV S+LR  +
Sbjct: 24  AQAQPGLPLLTGAAGGQSYSL-PVQTLVFLTSLGFLPAILLMMSSFTRIIIVLSLLRHAL 82

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G  + PPN V+I LALF+TF+VMSP LD+       PL +++I+   A+   A P   FM
Sbjct: 83  GTQTTPPNQVLIGLALFLTFFVMSPVLDKVYTDAYVPLRDSKISVEQALDTAATPLRQFM 142

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
              TRE DL+LF  M +       I   D +  R LIP+F+ SEL+ SF+IGF I +PFL
Sbjct: 143 LKQTREPDLALFAKMGNLP----PIASPDQVPMRALIPAFVTSELKTSFQIGFAIFIPFL 198

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +ID++VA ++M+MGMMM+ P+  SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 199 VIDIVVAAVLMSMGMMMVTPSIFSLPFKIMLFVLVDGWHLLLGSLAQSF 247


>gi|15606937|ref|NP_214318.1| flagellar biosynthesis protein FliP [Aquifex aeolicus VF5]
 gi|6225367|sp|O67750|FLIP_AQUAE RecName: Full=Flagellar biosynthetic protein fliP
 gi|2984179|gb|AAC07711.1| flagellar biosynthetic protein FliP [Aquifex aeolicus VF5]
          Length = 239

 Score =  201 bits (511), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 89/239 (37%), Positives = 149/239 (62%), Gaps = 5/239 (2%)

Query: 7   FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
             + +++   VF++      + +          +R     TILS+ P +LIM T F R +
Sbjct: 5   LTILILSAGFVFSQIPP---IELKVGEGNLVDSIRLLIFLTILSLVPSILIMFTSFTRLV 61

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           +V S+LR  +G    PPN VII+L+LF+TF++M PT+D+     +QP +  +I++    +
Sbjct: 62  VVLSLLRQAIGTPQAPPNQVIIALSLFLTFFIMKPTIDKINSEALQPYIREEISDEEFFK 121

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           RV      FM  +TR++ L  F+ +A        + +   I  R++IP+FM+SEL+ +FE
Sbjct: 122 RVEFYAKDFMLKHTRKETLEAFLSIAKI--PKDSVKEPHEIPLRVVIPAFMVSELKTAFE 179

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           I FL+ +PFLI+D++VA+I+++MG++M+PP  ISLPFK++ FVL +GW L+V +LV+S+
Sbjct: 180 IVFLLYIPFLIVDLVVASILISMGIIMIPPQLISLPFKIMLFVLANGWELVVLSLVRSY 238


>gi|89899371|ref|YP_521842.1| flagellar biosynthesis protein FliP [Rhodoferax ferrireducens T118]
 gi|89344108|gb|ABD68311.1| flagellar biosynthetic protein FliP [Rhodoferax ferrireducens T118]
          Length = 260

 Score =  201 bits (511), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 92/245 (37%), Positives = 145/245 (59%), Gaps = 4/245 (1%)

Query: 2   IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
           +     A+   +  L  +   L  +M         +  ++T   FT LS  P +L+M+T 
Sbjct: 19  VAVVLLAILTQSAALAQSAGQLPLLMGSGPSGVSFSVPIQTLLFFTALSFLPAVLLMMTG 78

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F R +IV S++R  +G  S PPN VI+ L+LF+TF VM PTLD+       P  N+ +  
Sbjct: 79  FTRIVIVLSLMRQALGTQSAPPNQVIVGLSLFLTFLVMGPTLDKVYSEAYLPYTNSGMPF 138

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
             A+ +  +P   FM   TR+ DL+LF  +A      T       +  R+L+P+F+ SEL
Sbjct: 139 EQALAKAEDPLRQFMSKQTRQSDLALFAKLAKLEPGAT----AQTVPMRVLVPAFVTSEL 194

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
           + +F+IGF+I +PFL+ID++VA+++M++GMMML P  ++LPFK++ FVL DGW+LL+ +L
Sbjct: 195 KSAFQIGFMIFIPFLVIDIVVASVLMSLGMMMLSPVLVALPFKLMLFVLADGWNLLIGSL 254

Query: 242 VKSFI 246
             SF+
Sbjct: 255 AASFV 259


>gi|71906402|ref|YP_283989.1| flagellar biosynthesis protein FliP [Dechloromonas aromatica RCB]
 gi|71846023|gb|AAZ45519.1| Flagellar transport protein FliP [Dechloromonas aromatica RCB]
          Length = 248

 Score =  201 bits (511), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 96/229 (41%), Positives = 148/229 (64%), Gaps = 6/229 (2%)

Query: 19  AKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
           A   L  V + PA    +T+   ++T  + T L+  P +++M+T F R +IV S+LR  +
Sbjct: 22  AAGGLPAVTSTPAAGGGTTYSLTIQTLLLMTALTFIPAIVLMMTGFTRIVIVLSLLRHAL 81

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G  + PPN V++ L+LF+TF+VMSP L++       PL  N+I    A +R A P   FM
Sbjct: 82  GTQTAPPNQVVVGLSLFLTFFVMSPVLEKVYTDAYVPLSENKINIMQAGERAAIPMRSFM 141

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
              TRE DL+LF  +A        I   +    RIL+P+F+ISEL+ +F+IGF++ +PFL
Sbjct: 142 LKQTRESDLALFAGIAKIDK----IETPEDTPLRILVPAFVISELKTAFQIGFILFIPFL 197

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +IDM+VA+++M+MGMMM+ P  ++LPFK++ FVL+DGW L++ +LV+SF
Sbjct: 198 VIDMVVASLLMSMGMMMMSPVMVALPFKLMLFVLVDGWHLVIGSLVQSF 246


>gi|77457776|ref|YP_347281.1| flagellar biosynthesis protein FliP [Pseudomonas fluorescens Pf0-1]
 gi|77381779|gb|ABA73292.1| flagellar biosynthesis protein [Pseudomonas fluorescens Pf0-1]
          Length = 252

 Score =  201 bits (511), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 90/220 (40%), Positives = 136/220 (61%), Gaps = 4/220 (1%)

Query: 26  VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
           +          +  ++   I T LS  P  +I++T F R IIVFSILR  +G+   P N 
Sbjct: 32  LGTNAEGAQEYSVSLQILLIMTALSFIPAAVILMTSFTRIIIVFSILRQALGLQQTPSNQ 91

Query: 86  VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145
           ++  +ALF+T ++M+P  DR     +QP +  ++T   A+++   P   FM   TR  DL
Sbjct: 92  ILTGMALFLTLFIMAPVFDRVNNDALQPYLAEKLTAQQAVEKAQVPIKDFMLAQTRSSDL 151

Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
            LF+ ++    + TDI   D     IL+P+F+ SEL+ +F+IGF+I +PFLIID++VA++
Sbjct: 152 ELFVRLS----KRTDIATPDAAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASV 207

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +MAMGMMML P  ISLPFK++ FVL+DGW+L++  L  SF
Sbjct: 208 LMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLASSF 247


>gi|157961199|ref|YP_001501233.1| flagellar biosynthesis protein FliP [Shewanella pealeana ATCC
           700345]
 gi|157846199|gb|ABV86698.1| flagellar biosynthetic protein FliP [Shewanella pealeana ATCC
           700345]
          Length = 249

 Score =  201 bits (511), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 87/247 (35%), Positives = 143/247 (57%), Gaps = 7/247 (2%)

Query: 2   IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTW---IVRTFGIFTILSIAPILLIM 58
           I         +     FA++ +   + +      ST     ++   + T LS  P ++IM
Sbjct: 5   ILVIVGLTLCLAAPAAFAENGILPAVTVSTGADGSTQYSVTMQILLLMTALSFIPAMVIM 64

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R I+V SILR  +G+   P N V+I +++FMTF++MSP  D+  +  +QP +   
Sbjct: 65  LTSFTRIIVVLSILRQAIGLQQTPSNQVLIGISMFMTFFIMSPVFDKIYDQAVQPYIEQG 124

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           +    A  +   P   FM   TR  DL  F++++       +I + +     ++IP+F+ 
Sbjct: 125 MPLQDAFTKGQGPLKDFMLAQTRLTDLDTFIEISG----YQNINEPEDAPMTVIIPAFIT 180

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P  +SLPFK++ FVL+DGWSL++
Sbjct: 181 SELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVM 240

Query: 239 ENLVKSF 245
             L  SF
Sbjct: 241 GTLANSF 247


>gi|317014102|gb|ADU81538.1| flagellar biosynthesis protein FliP [Helicobacter pylori
           Gambia94/24]
          Length = 248

 Score =  201 bits (511), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 103/224 (45%), Positives = 157/224 (70%), Gaps = 4/224 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           S++  +N P+D       +    + T+L +AP L++++T F R I+VFS LRT +G    
Sbjct: 26  SVNLSLNAPSDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQT 85

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PP  +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ A PF  FM  NTR
Sbjct: 86  PPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKKFMLKNTR 145

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           EKDL+LF  + +  +  T     D +   +LIP+FMISEL+ +F+IGFL+ LPFL+IDM+
Sbjct: 146 EKDLALFFRIRNLPNPKT----PDDVSLSVLIPAFMISELKTAFQIGFLLYLPFLVIDMV 201

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LL ENLV SF
Sbjct: 202 ISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 245


>gi|157692315|ref|YP_001486777.1| flagellar biosynthesis protein FliP [Bacillus pumilus SAFR-032]
 gi|157681073|gb|ABV62217.1| flagellar biosynthesis protein FliP [Bacillus pumilus SAFR-032]
          Length = 221

 Score =  201 bits (511), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 100/221 (45%), Positives = 149/221 (67%), Gaps = 5/221 (2%)

Query: 25  DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
           D+ N     +IST  VR   + T+ S+AP +LI++TCF R +IV S +RT +   S+PPN
Sbjct: 6   DLFNSSGAGNIST-SVRLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATNSMPPN 64

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
            V++ LALF+TF++M+PT     +  + PL+N+ IT   A ++   P   FM  +TR+KD
Sbjct: 65  QVLVGLALFLTFFIMAPTFSEINKEALTPLLNDDITLNQAYEKAEVPIKEFMSKHTRQKD 124

Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
           L+LF+  A              I    ++P+F ISEL+ +F+IGF+I +PFLIIDM+VA+
Sbjct: 125 LALFLSYAKMDTPE----SIKDIPLTAMVPAFAISELKTAFQIGFMIFIPFLIIDMVVAS 180

Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++M+MGMMMLPP  ISLPFK++ FVL+DGW L+V++L++SF
Sbjct: 181 VLMSMGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLLQSF 221


>gi|51246523|ref|YP_066407.1| flagellar biosynthesis protein FliP [Desulfotalea psychrophila
           LSv54]
 gi|50877560|emb|CAG37400.1| probable flagellar biosynthetic protein (FliP) [Desulfotalea
           psychrophila LSv54]
          Length = 260

 Score =  201 bits (511), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 84/232 (36%), Positives = 143/232 (61%), Gaps = 4/232 (1%)

Query: 14  PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73
           P       ++   +         +  ++   + TI+S+AP +++M+TCF R +IV   +R
Sbjct: 32  PSWAVGLPNITLGLEDADSPEKVSAALQILFVLTIISVAPAIVLMMTCFTRIVIVLGFVR 91

Query: 74  TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133
             MG  ++PPN ++I  ALF+TF++MSPT+++  +  +QP +  +I++  A+        
Sbjct: 92  QAMGTQNMPPNQIVIGFALFLTFFIMSPTINKINDTALQPYLAKEISQGKALDLTVFSMR 151

Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
            FM +  +E +LS   ++               I    LIP++M+SEL+ +F +GF++ +
Sbjct: 152 EFMFSQVQESELSFMAELTIEKEPKDKA----DIPTTTLIPAYMLSELKTAFSMGFMVYI 207

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           PFL+IDMIVA+++M+MGMMMLPP  IS+PFK++ F+L+DGW+L+V +LVKSF
Sbjct: 208 PFLVIDMIVASVLMSMGMMMLPPVIISMPFKLLLFILVDGWTLIVGSLVKSF 259


>gi|317180434|dbj|BAJ58220.1| flagellar biosynthesis protein FliP [Helicobacter pylori F32]
          Length = 248

 Score =  201 bits (511), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 104/227 (45%), Positives = 156/227 (68%), Gaps = 4/227 (1%)

Query: 19  AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           A  S++  +N P D       +    + T+L +AP L++++T F R I+VFS LRT +G 
Sbjct: 23  ALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGT 82

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
              PP  +++SL+L +TF++M P+L ++ + GI+P M+  I+ T A ++ A PF  FM  
Sbjct: 83  QQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKTISYTEAFEKSALPFKEFMLK 142

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
           NTREKDL+LF  + +  +  T     D +   +LIP+FMISEL+ +F+IGFL+ LPFL+I
Sbjct: 143 NTREKDLALFFRIRNLPNPKT----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVI 198

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           DM++++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LL ENLV SF
Sbjct: 199 DMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 245


>gi|152965632|ref|YP_001361416.1| flagellar biosynthesis protein FliP [Kineococcus radiotolerans
           SRS30216]
 gi|151360149|gb|ABS03152.1| flagellar biosynthetic protein FliP [Kineococcus radiotolerans
           SRS30216]
          Length = 287

 Score =  201 bits (511), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 83/209 (39%), Positives = 129/209 (61%), Gaps = 4/209 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  +      TILS+AP LL++ TCF + +IV  + R  +G+   PPN V+  LALF+T 
Sbjct: 81  SQSITVIIALTILSVAPALLLLTTCFTKILIVLGLTRNALGLQGTPPNQVLAGLALFLTM 140

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           +VM+PT     +  +QP +  + T T A    ++P   FM   TR ++L+L    A    
Sbjct: 141 FVMAPTFGAINDTAVQPYLKGEKTATVAFTDGSQPLKEFMLKQTRPEELALMTKAAKRDL 200

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
             T     +      L+P+F +SELR +F IGF+I +PFL+ID++V+  +M++GMMMLPP
Sbjct: 201 PAT----REETPLTTLVPAFALSELRSAFIIGFVIFIPFLVIDIVVSGALMSLGMMMLPP 256

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            ++SLPFK++ FV+IDGW L+++ LV S+
Sbjct: 257 VTVSLPFKLLLFVMIDGWGLIIKALVSSY 285


>gi|239628946|ref|ZP_04671977.1| flagellar biosynthesis protein FliP [Clostridiales bacterium
           1_7_47_FAA]
 gi|239519092|gb|EEQ58958.1| flagellar biosynthesis protein FliP [Clostridiales bacterium
           1_7_47FAA]
          Length = 255

 Score =  201 bits (511), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 88/242 (36%), Positives = 140/242 (57%), Gaps = 2/242 (0%)

Query: 6   FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65
            FAL      +    + +   +   +       ++    +F  L++ P L+IM+T F R 
Sbjct: 13  VFALTWAGSAMTAYATDVSVTLQGSSGAGKPMDMLDIMFLFLFLAVVPSLIIMMTSFTRI 72

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
           +IV S LR  +G    PPN +++ LALF+T ++M+P          QP  +  IT   A 
Sbjct: 73  VIVLSFLRNALGTQQSPPNQILVGLALFLTLFIMAPVFTSVNVQAYQPYKSGTITREEAF 132

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND--HIEYRILIPSFMISELRR 183
            R  EP   FM   T +K L LF+ ++ +   +T         +    ++PSF++SEL +
Sbjct: 133 DRAQEPMKEFMLKQTEKKSLDLFLSISKTDPPDTSKGPEGYMELGLTTIVPSFILSELNK 192

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
           +F +GFLI +PFLIID++V++ +M+MGM+MLPPT I+LPFK++ FVL+DGWSL+++ LV+
Sbjct: 193 AFTMGFLIFIPFLIIDLVVSSTLMSMGMVMLPPTMIALPFKIMMFVLVDGWSLVIKTLVQ 252

Query: 244 SF 245
           SF
Sbjct: 253 SF 254


>gi|220929452|ref|YP_002506361.1| flagellar biosynthesis protein FliP [Clostridium cellulolyticum
           H10]
 gi|219999780|gb|ACL76381.1| flagellar biosynthetic protein FliP [Clostridium cellulolyticum
           H10]
          Length = 266

 Score =  201 bits (511), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 98/254 (38%), Positives = 146/254 (57%), Gaps = 10/254 (3%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDV-----MNIPADLSISTWIVRTFGIFTILSIAPIL 55
           M       +F +      A+ ++        +   +D    +  ++     T+L+IAP +
Sbjct: 12  MFTAILTVIFCLMGGQALAEPTVSVTRDGINIGASSDPKEVSSSIQLLIALTVLAIAPSI 71

Query: 56  LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115
           LIM+T F R II+ S LR  +G   +PPN V+I LALF+T +VMSP L    E   QP  
Sbjct: 72  LIMMTGFTRIIIILSFLRNALGTQQMPPNQVLIGLALFITLFVMSPVLSDINENAFQPYS 131

Query: 116 NNQITETTAIQRVAEPFWVFMRNNT----REKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           + +IT+  AI + ++    +M        REKDL LFM +         +     +   I
Sbjct: 132 DGKITQQQAIDKSSQTIKTWMVKQIFSNNREKDLELFMTLGGQKDP-IRVQDASKLSLTI 190

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           + P+F+ISEL  +F+ GFLI LPFLIIDM+V++ +M+MGMMMLPP  ISLPFK++ FVL+
Sbjct: 191 VAPAFLISELTIAFKFGFLIFLPFLIIDMVVSSALMSMGMMMLPPIMISLPFKILLFVLV 250

Query: 232 DGWSLLVENLVKSF 245
           DGWS+L ++++ SF
Sbjct: 251 DGWSMLTQSIITSF 264


>gi|294140213|ref|YP_003556191.1| flagellar biosynthetic protein FliP [Shewanella violacea DSS12]
 gi|293326682|dbj|BAJ01413.1| flagellar biosynthetic protein FliP [Shewanella violacea DSS12]
          Length = 248

 Score =  201 bits (511), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 84/220 (38%), Positives = 136/220 (61%), Gaps = 4/220 (1%)

Query: 26  VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
           V   P   +  +  ++   + T +S  P ++IM+T F R I+V SILR  +G+   P N 
Sbjct: 31  VTTTPDGGTQYSVTMQILLLMTAMSFLPAMIIMLTSFTRIIVVLSILRQAIGLQQTPSNQ 90

Query: 86  VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145
           V+I +++FMTF++M+P  D+  +  ++P +   +    A     EP   FM   TR  DL
Sbjct: 91  VLIGISMFMTFFIMAPVFDKIYDEAVKPYIAETMDIEQAFNIGKEPIKTFMLAQTRLTDL 150

Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
             F++++       +I   + +   +LIPSF+ SEL+ +F+IGF++ +PFL++D++VA+I
Sbjct: 151 DTFIEISG----YQNIDSPEDVPMSVLIPSFITSELKTAFQIGFMLFVPFLVLDLVVASI 206

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +MAMGMMML P  +SLPFK++ FVL+DGWSL++  L  SF
Sbjct: 207 LMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVMGTLANSF 246


>gi|319649551|ref|ZP_08003707.1| flagellar biosynthesis protein P [Bacillus sp. 2_A_57_CT2]
 gi|317398713|gb|EFV79395.1| flagellar biosynthesis protein P [Bacillus sp. 2_A_57_CT2]
          Length = 221

 Score =  200 bits (510), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 95/209 (45%), Positives = 148/209 (70%), Gaps = 4/209 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  V+ F + T+LS+AP +LI++TCF R IIV S +RT +    +PPN V+I L+LF+TF
Sbjct: 17  STSVKLFLLLTVLSLAPSILILMTCFTRIIIVLSFVRTALATQQMPPNQVLIGLSLFLTF 76

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           ++M+PT+    E  + PL N +I    A ++ + PF  FM  +TR+KDL+LF+  + +  
Sbjct: 77  FIMAPTMQEVNEQALTPLFNEEINLEEAYEKASIPFKEFMSAHTRQKDLALFLQYSGAEA 136

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
                +  + I    L+P+F ISE++ +F+IGF+I +PFL+IDM+VA+++M+MGMMMLPP
Sbjct: 137 P----SSIEDIPLTSLVPAFAISEIKTAFQIGFMIFIPFLVIDMVVASVLMSMGMMMLPP 192

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             ISLPFK++ FVL+DGW L+V++L++SF
Sbjct: 193 VMISLPFKILLFVLVDGWYLVVKSLLQSF 221


>gi|89098628|ref|ZP_01171510.1| flagellar biosynthesis protein P [Bacillus sp. NRRL B-14911]
 gi|89086590|gb|EAR65709.1| flagellar biosynthesis protein P [Bacillus sp. NRRL B-14911]
          Length = 221

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 94/209 (44%), Positives = 146/209 (69%), Gaps = 4/209 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  V+   + T+LS+AP +LI++TCF R IIV S +RT +    +PPN V++ L+LF+TF
Sbjct: 17  STSVKMLLLLTVLSLAPSILILMTCFTRIIIVLSFVRTALATQQMPPNQVLVGLSLFLTF 76

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           ++M+PT     E  + PL N++I    A ++ + PF  FM  +TR+KDL+LF++ + +  
Sbjct: 77  FIMAPTFQEVNEQALTPLFNDEINLEQAYEKASVPFKDFMSAHTRQKDLALFLEYSGAET 136

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
                     I    L+P+F ISE++ +F+IGF+I +PFL+IDMIVA+++M+MGMMMLPP
Sbjct: 137 PE----SIQDIPLTALVPAFAISEIKTAFQIGFMIFIPFLVIDMIVASVLMSMGMMMLPP 192

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             ISLPFK++ FVL+DGW L+V++L++SF
Sbjct: 193 VMISLPFKILLFVLVDGWYLVVKSLLQSF 221


>gi|229591840|ref|YP_002873959.1| flagellar biosynthesis protein FliP [Pseudomonas fluorescens SBW25]
 gi|229363706|emb|CAY51090.1| flagellar biosynthesis [Pseudomonas fluorescens SBW25]
          Length = 247

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 91/220 (41%), Positives = 138/220 (62%), Gaps = 4/220 (1%)

Query: 26  VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
           +    A     +  ++   I T LS  P  ++++T F R IIVFSILR  +G+   P N 
Sbjct: 29  LGTNAAGAQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQ 88

Query: 86  VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145
           ++  +ALF+T ++M+P  D+  +  +QP +  ++T   AI +   P   FM + TR  DL
Sbjct: 89  ILTGMALFLTLFIMAPVFDKVNQQALQPYLAEKMTAQDAIDKAQGPIKDFMLSQTRSSDL 148

Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
            LFM ++    + TDI   D     IL+P+F+ SEL+ +F+IGF+I +PFLIID++VA++
Sbjct: 149 ELFMRLS----KRTDIATPDQAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASV 204

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +MAMGMMML P  ISLPFK++ FVL+DGW+L++  L  SF
Sbjct: 205 LMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLASSF 244


>gi|213612735|ref|ZP_03370561.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 206

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 93/207 (44%), Positives = 141/207 (68%), Gaps = 4/207 (1%)

Query: 39  IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
            V+T    T L+  P +L+M+T F R IIVF +LR  +G  S PPN V++ LALF+TF++
Sbjct: 2   SVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFI 61

Query: 99  MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
           MSP +D+      QP    +I+   A+ + A+P   FM   TRE DL+LF  +A+S    
Sbjct: 62  MSPVIDKIYVDAYQPFSEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSG--- 118

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
             +   + +  RIL+P+++ SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +
Sbjct: 119 -PLQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPAT 177

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 178 IALPFKLMLFVLVDGWQLLVGSLAQSF 204


>gi|154174223|ref|YP_001408145.1| flagellar biosynthesis protein FliP [Campylobacter curvus 525.92]
 gi|112802855|gb|EAU00199.1| flagellar biosynthetic protein FliP [Campylobacter curvus 525.92]
          Length = 245

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 108/244 (44%), Positives = 154/244 (63%), Gaps = 6/244 (2%)

Query: 4   YCFFALFLVTPELVFAK--SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
           +   ALF ++          +++  ++ P+        +      TIL++AP L+ M+T 
Sbjct: 5   FVLAALFCISFGAPVDPVVPTINLSLSAPSSPQQLVNSLNVLIFLTILTLAPSLVFMMTS 64

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F R IIVFS LR  MG   VPP+ VIISLA+ +TF++M P   +S + G++P +  QI  
Sbjct: 65  FLRLIIVFSFLRQAMGTQQVPPSTVIISLAMVLTFFIMEPIGRQSYDEGVKPYLAEQIGY 124

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
               +R  +PF  FM  NTREKDL+LF  + +  +     +  D I   I + +FMISEL
Sbjct: 125 EEMFERSVKPFKNFMVKNTREKDLALFFRIRNLQNP----SNIDDIPLSIAMSAFMISEL 180

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
           + +FEI FL+ LPFL+IDM+V++++MAMGMMMLPP  ISLPFK++ FVL+DGW+LLV NL
Sbjct: 181 KTAFEIAFLLYLPFLVIDMVVSSVLMAMGMMMLPPVMISLPFKLLIFVLVDGWNLLVGNL 240

Query: 242 VKSF 245
           VKSF
Sbjct: 241 VKSF 244


>gi|209963528|ref|YP_002296443.1| flagellar biosynthesis protein FliP [Rhodospirillum centenum SW]
 gi|209956994|gb|ACI97630.1| flagellar biosynthesis protein FliP [Rhodospirillum centenum SW]
          Length = 267

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 112/237 (47%), Positives = 151/237 (63%), Gaps = 12/237 (5%)

Query: 21  SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
            S    M    D S +  +V+   + TILS+AP LL+MVT F R ++V S+LR+ +G+  
Sbjct: 27  QSFSMDMGGTGDASFAGRMVQVVALVTILSVAPGLLVMVTSFTRIVVVLSLLRSALGLQQ 86

Query: 81  VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
            PPN+V++ LAL +T YVM PTLDRS   G+QP+++ QITE  A +R+ EPF  FM+ + 
Sbjct: 87  TPPNMVLLGLALLLTAYVMGPTLDRSWREGVQPMVDGQITEEQAFERIVEPFRDFMQAHV 146

Query: 141 REKDLSLFMDMAHSSHRNTDI------------TKNDHIEYRILIPSFMISELRRSFEIG 188
           R KDL LF      +                          R LI +F+ISELRR+FEIG
Sbjct: 147 RPKDLELFRSFEAGTKSGAAPAAGSAGPAPSTEEAASAPGLRTLIAAFVISELRRAFEIG 206

Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           FL+ LPFL+IDMI+A ++MAMGMMMLPP  ISLPFK+IFFV++DGW L+   LV+S+
Sbjct: 207 FLLFLPFLVIDMIIAAVLMAMGMMMLPPVIISLPFKIIFFVMVDGWLLVAGALVRSY 263


>gi|291276476|ref|YP_003516248.1| flagellar biosynthesis protein [Helicobacter mustelae 12198]
 gi|290963670|emb|CBG39502.1| flagellar biosynthesis protein [Helicobacter mustelae 12198]
          Length = 247

 Score =  200 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 99/236 (41%), Positives = 149/236 (63%), Gaps = 4/236 (1%)

Query: 10  FLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVF 69
           F  +        +++  +  P         +    + T+L +AP L++++T F R +IVF
Sbjct: 15  FAYSIAAAPTIPTVNLSLTAPDTPKQLVTTLNVIIVLTLLVLAPSLVLVMTSFTRLVIVF 74

Query: 70  SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129
           S LRT +G    PP  +++SLA+ +TF++M P +  S +  I P ++ +I+  TA  R  
Sbjct: 75  SFLRTALGTQQSPPTQILVSLAMVLTFFIMEPVVRESYQKAIVPYLDAKISYETAFDRGV 134

Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189
           +PF  FM  NTREKDL+LF  +    +  T       +    LIP+FMISEL+ +F+IGF
Sbjct: 135 QPFKDFMLKNTREKDLALFYRIRKLENPKTSA----DVSLTTLIPAFMISELKTAFQIGF 190

Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           L+ LPFL+IDM+V++I+MAMGMMMLPP  ISLPFK++ FVL+DG++LL+ NLV+SF
Sbjct: 191 LLYLPFLVIDMVVSSILMAMGMMMLPPVMISLPFKILIFVLVDGFNLLIGNLVESF 246


>gi|242281272|ref|YP_002993401.1| flagellar biosynthesis protein FliP [Desulfovibrio salexigens DSM
           2638]
 gi|242124166|gb|ACS81862.1| flagellar biosynthetic protein FliP [Desulfovibrio salexigens DSM
           2638]
          Length = 252

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 94/241 (39%), Positives = 143/241 (59%), Gaps = 8/241 (3%)

Query: 9   LFLVTPELVFAKSSLHDVMNIPADLSIS----TWIVRTFGIFTILSIAPILLIMVTCFPR 64
             L+ P   FA+ ++  +    A           ++    + TIL +AP +L+ +T F R
Sbjct: 15  FLLLIPAAAFAQETVPTLTLNLAAGQEEPEQVAKLLEILFLLTILGMAPSILLTMTSFTR 74

Query: 65  FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
            IIVF  LR  MG   +PPN ++ SLA+FMT  +M PT     +  +QP +N +I  + A
Sbjct: 75  IIIVFHFLRQAMGTQQMPPNQILASLAIFMTVVIMMPTGKAINDSALQPYLNEEIGFSEA 134

Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
           I R   P   F+  +TREKDLS+F  +       T     + +   +L+ ++ ISEL+  
Sbjct: 135 IDRAQVPIRTFLFKHTREKDLSIFYSITGEKRPET----KEDVNTMLLVAAYTISELKTG 190

Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           F IGFLI +PFLI+DM++A+I++AMGMMMLPP  +SLPFK++ F+++DGWSLL  ++V +
Sbjct: 191 FTIGFLIYVPFLILDMVIASILLAMGMMMLPPAMVSLPFKILLFIMVDGWSLLTGSIVNT 250

Query: 245 F 245
           F
Sbjct: 251 F 251


>gi|87307408|ref|ZP_01089553.1| flagellar biosynthetic protein fliP-putative transporter of
           flagellar proteins [Blastopirellula marina DSM 3645]
 gi|87290148|gb|EAQ82037.1| flagellar biosynthetic protein fliP-putative transporter of
           flagellar proteins [Blastopirellula marina DSM 3645]
          Length = 317

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 82/239 (34%), Positives = 129/239 (53%), Gaps = 27/239 (11%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
                 ++   + T+LS+AP +L+M T F R IIV  +LR  +G   +PP+ V+ ++ALF
Sbjct: 75  GGLVSTIQIMVLLTVLSLAPAILLMTTGFIRIIIVLGLLRQALGTQQLPPSQVVTAIALF 134

Query: 94  MTFYVMSPTLDRSIEMGIQPLMN---------------------NQITETTAIQRVAEPF 132
           MT  +M PT     E  + P                         ++    A ++  +P 
Sbjct: 135 MTILLMYPTWQEVYEESVGPYTREEVNPDTGQQYKLFAVEDPATGEMGPDEAWEKGTKPI 194

Query: 133 WVFMRNNT----REKDLSLFMDMAHSSHRNT--DITKNDHIEYRILIPSFMISELRRSFE 186
             FM           D+ +F +      ++   +    D +  + LIP+F++SEL+ +F 
Sbjct: 195 RHFMSKQIDIAGNSDDVWMFFEFLPQGTKDKIGEPQSYDDVPLQALIPAFILSELKTAFL 254

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGF I LPFLI+D++VA+I ++MGMMMLPP  ISLPFK++ FVL+DGW+L+V  L++SF
Sbjct: 255 IGFQIYLPFLILDIVVASITISMGMMMLPPVMISLPFKLLLFVLVDGWTLVVGMLLQSF 313


>gi|261838080|gb|ACX97846.1| flagellar biosynthetic protein [Helicobacter pylori 51]
          Length = 252

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 102/224 (45%), Positives = 156/224 (69%), Gaps = 4/224 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           S++  +N P D       +    + T+L +AP L++++T F R I+VFS LRT +G    
Sbjct: 30  SVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQT 89

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PP  +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ A PF  FM  NTR
Sbjct: 90  PPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLKNTR 149

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           EKDL+LF  + +  +  T     + +   +LIP+FMISEL+ +F+IGFL+ LPFL+IDM+
Sbjct: 150 EKDLALFFRIRNLPNPKT----PNEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVIDMV 205

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LL ENLV SF
Sbjct: 206 ISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 249


>gi|312962263|ref|ZP_07776755.1| flagellar biosynthetic protein FliP [Pseudomonas fluorescens WH6]
 gi|311283600|gb|EFQ62189.1| flagellar biosynthetic protein FliP [Pseudomonas fluorescens WH6]
          Length = 247

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 96/248 (38%), Positives = 148/248 (59%), Gaps = 7/248 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSIS---TWIVRTFGIFTILSIAPILLI 57
           M       L+L TP    A       + +  + + +   +  ++   I T LS  P  ++
Sbjct: 1   MRVLLTLMLWLATPLAFGADPLSIPAITLGTNAAGAQEYSVSLQILLIMTALSFIPAFVM 60

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           ++T F R IIVFSILR  +G+   P N ++  +ALF+T ++M+P  D+  +  +QP +  
Sbjct: 61  LMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDKVNQQALQPYLAE 120

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
           ++T   AI +   P   FM + TR  DL LFM ++    + TDI   D     IL+P+F+
Sbjct: 121 KMTAQDAIDKAQGPIKDFMLSQTRSSDLELFMRLS----KRTDIASPDQAPLTILVPAFV 176

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
            SEL+ +F+IGF+I +PFLIID++VA+++MAMGMMML P  ISLPFK++ FVL+DGW+L+
Sbjct: 177 TSELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALI 236

Query: 238 VENLVKSF 245
           +  L  SF
Sbjct: 237 IGTLASSF 244


>gi|260222420|emb|CBA31966.1| Flagellar biosynthetic protein fliP [Curvibacter putative symbiont
           of Hydra magnipapillata]
          Length = 218

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 92/220 (41%), Positives = 137/220 (62%), Gaps = 4/220 (1%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
           +         +  ++T   FT LS  P +L+M+T F R +IV S+LR  +G  S PPN V
Sbjct: 2   VGTGESGVNFSVPIQTLLFFTALSFIPAVLLMMTGFTRIVIVLSLLRQALGTQSAPPNQV 61

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           I+ L+LF+TF+VM PT DR      QP     ++   A+Q+   P   FM   TR+ D S
Sbjct: 62  IVGLSLFLTFFVMGPTFDRIYADAYQPYSQGTMSFDQALQKAEVPIRNFMVKQTRQSDFS 121

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
           LF  +A          K D    R+L+P+F+ISEL+ +F+IGF+I +PFL+ID++VA+++
Sbjct: 122 LFAKLAKLPPDM----KADTAPIRVLVPAFVISELKSAFQIGFMIFIPFLVIDIVVASVL 177

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           M++GMMML P  ++LPFK++ FVL DGW+LL+ +L  SF+
Sbjct: 178 MSLGMMMLSPVLVALPFKLMLFVLADGWNLLIGSLAASFV 217


>gi|125973002|ref|YP_001036912.1| flagellar biosynthesis protein FliP [Clostridium thermocellum ATCC
           27405]
 gi|256004799|ref|ZP_05429774.1| flagellar biosynthetic protein FliP [Clostridium thermocellum DSM
           2360]
 gi|281417213|ref|ZP_06248233.1| flagellar biosynthetic protein FliP [Clostridium thermocellum JW20]
 gi|125713227|gb|ABN51719.1| flagellar biosynthetic protein FliP [Clostridium thermocellum ATCC
           27405]
 gi|255991249|gb|EEU01356.1| flagellar biosynthetic protein FliP [Clostridium thermocellum DSM
           2360]
 gi|281408615|gb|EFB38873.1| flagellar biosynthetic protein FliP [Clostridium thermocellum JW20]
 gi|316940762|gb|ADU74796.1| flagellar biosynthetic protein FliP [Clostridium thermocellum DSM
           1313]
          Length = 260

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 90/228 (39%), Positives = 140/228 (61%), Gaps = 1/228 (0%)

Query: 19  AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           A   L   +    +    +  ++   + TILS+AP +LIM+T F R IIV S  R  +G 
Sbjct: 33  ALPKLGFTVEPSDNPQDVSTTIQIIVLLTILSLAPSILIMMTSFVRIIIVLSFFRNAIGT 92

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
             +PPN V+I LALF+T ++M P L    E   +P  N +IT+  A++R ++    FM  
Sbjct: 93  QQMPPNQVLIGLALFLTLFIMRPVLTEINETAFKPYTNQEITQEVALERSSDIIKRFMLK 152

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
            T + DL LF+ ++       +      +   I+IP+F+ISEL  +F+IGFLI +PFL+I
Sbjct: 153 QTSKNDLGLFVSLSGMETPIKEEDIP-KLPLTIVIPAFIISELTIAFKIGFLIYIPFLVI 211

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           DM+V++ +M+MGMMMLPP  ISLPFK++ F+++ GW+L+ + +V SF+
Sbjct: 212 DMVVSSTLMSMGMMMLPPVMISLPFKILLFIMVGGWNLMTQMIVNSFV 259


>gi|54307253|ref|YP_128273.1| flagellar biosynthesis protein FliP [Photobacterium profundum SS9]
 gi|46911673|emb|CAG18471.1| Putative flagellar assembly protein [Photobacterium profundum SS9]
          Length = 242

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 85/229 (37%), Positives = 136/229 (59%), Gaps = 4/229 (1%)

Query: 17  VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
            FA+      +N P      +  ++ F + T L+  P +L+M T F R IIV  ILR  M
Sbjct: 17  AFAQDLPLLTINGPNGQEEYSVKLQIFLLMTALAFLPAMLLMTTSFTRIIIVLGILRQAM 76

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G+   PPN V++ +AL ++ ++M P +    +  + P    ++T   A +   +P   FM
Sbjct: 77  GLQQSPPNRVLVGIALTLSLFIMRPVIYDIHDNAVVPYQKGEMTMFEAAKVAEQPLRQFM 136

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
              TRE DL   + +A     +      D +++ +++P+F++SEL+ +F+IGF++ +PFL
Sbjct: 137 LQQTRETDLEQILRIADEPTPD----NVDDLDFLLVMPAFILSELKTAFQIGFMLFIPFL 192

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IIDM+VA+++MAMGMMML P  ISLPFK++ FV++DGWS+ V  L  SF
Sbjct: 193 IIDMVVASVLMAMGMMMLSPLIISLPFKLMVFVMVDGWSMTVGTLSASF 241


>gi|322833206|ref|YP_004213233.1| flagellar biosynthetic protein FliP [Rahnella sp. Y9602]
 gi|321168407|gb|ADW74106.1| flagellar biosynthetic protein FliP [Rahnella sp. Y9602]
          Length = 260

 Score =  200 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 91/226 (40%), Positives = 143/226 (63%), Gaps = 6/226 (2%)

Query: 22  SLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79
            L  +++         W   ++T    T L++ P +L+M T F R IIV  +LR  +G  
Sbjct: 37  QLPGIISQQMSNGTQNWSLPIQTLVFITTLTLLPAMLLMCTSFTRIIIVLGLLRNALGTP 96

Query: 80  SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139
           S PPN V++ L LF+TF+VM+P  D+      QP   N+IT   A+ + A+P   FM   
Sbjct: 97  SAPPNQVLLGLGLFLTFFVMAPVFDKIYSDAYQPFSENKITMQEAMDKGAQPLRQFMLRQ 156

Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
           TRE DL+L+  +A+       +   + +  RIL+P+++ SEL+ +F+IGF + +PF+IID
Sbjct: 157 TRESDLALYARLANIP----PLAGPEAVPMRILLPAYVTSELKTAFQIGFTVFIPFMIID 212

Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 213 LVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLLGSLAQSF 258


>gi|124516299|gb|EAY57807.1| Flagellar biosynthesis protein FliP [Leptospirillum rubarum]
          Length = 265

 Score =  200 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 92/193 (47%), Positives = 134/193 (69%), Gaps = 3/193 (1%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +L+M+T F R ++V S LR  MG   VPPN V++ L+LF+TF+VM+P      E  I 
Sbjct: 75  PAILVMMTSFTRIVVVLSFLRQAMGTAQVPPNQVLVGLSLFLTFFVMAPVWKTMDETAIT 134

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P ++ +I    A+ R  +P   FM    R+KD++LF+ +AH        +  D I   +L
Sbjct: 135 PYLDKKIAPDVAVDRAMKPVRAFMFRQVRQKDIALFVRIAHLPR---TPSSPDDIPTYVL 191

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           IP+F++SEL  +FE+GFLI LPFLI+DM+V++++M+MGMMMLPPT +SLPFK++ FVL+D
Sbjct: 192 IPAFVVSELSTAFEMGFLIYLPFLILDMVVSSVLMSMGMMMLPPTVVSLPFKILLFVLVD 251

Query: 233 GWSLLVENLVKSF 245
           GWSL+V +LV+SF
Sbjct: 252 GWSLVVGSLVRSF 264


>gi|304404260|ref|ZP_07385922.1| flagellar biosynthetic protein FliP [Paenibacillus curdlanolyticus
           YK9]
 gi|304347238|gb|EFM13070.1| flagellar biosynthetic protein FliP [Paenibacillus curdlanolyticus
           YK9]
          Length = 256

 Score =  200 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 94/207 (45%), Positives = 142/207 (68%), Gaps = 4/207 (1%)

Query: 39  IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
            V    + T+LS+AP +L+++T F R +IV   +RT +G   +PPN V+I LA+F+TF+V
Sbjct: 51  AVSILLLLTVLSVAPAILVLMTSFTRIVIVLGFVRTSLGTQQMPPNQVLIGLAMFLTFFV 110

Query: 99  MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
           M+PTL +  ++ +QP +  +IT+  A  + A P   FM + TREKDL LFM    +    
Sbjct: 111 MAPTLSQVNQVALQPYLKGEITQMQAFDKAAVPMKKFMFSQTREKDLLLFMKYTKTEKPK 170

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
                 + I   +L+P++ ISEL+ +F++GF+I +PFLIIDM+V++ +MAMGMMMLPP  
Sbjct: 171 ----SYEDIPITVLVPAYAISELKTAFQMGFMIFIPFLIIDMVVSSTLMAMGMMMLPPVM 226

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ISLPFK++ FVL+DGW L+V++L+ SF
Sbjct: 227 ISLPFKILLFVLVDGWYLIVKSLLISF 253


>gi|90406809|ref|ZP_01215001.1| flagellar biosynthesis protein [Psychromonas sp. CNPT3]
 gi|90312046|gb|EAS40139.1| flagellar biosynthesis protein [Psychromonas sp. CNPT3]
          Length = 249

 Score =  200 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 89/224 (39%), Positives = 140/224 (62%), Gaps = 5/224 (2%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           +   V          +  ++     T LS  P +L+++T F R ++V SILR  +G+   
Sbjct: 28  TALTVTTNSLGNQEYSVTLQVLAFMTALSFLPAMLVLMTSFTRIVVVMSILRQALGLQQT 87

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           P N VI  +ALF+TF++M+P  D+  E  +QP +N  +    AI++  +P   FM   TR
Sbjct: 88  PSNQVINGIALFLTFFIMTPVFDKINEEALQPYLNEDMNIVQAIEQGKKPLMAFMLAQTR 147

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
            KDL  F+++A     N  +   + + + +LIP+F+ SEL+ +F+IGF+I +PFLIID++
Sbjct: 148 LKDLETFLEIA-----NVQVDTPEEVPFTVLIPAFVTSELKTAFQIGFMIFIPFLIIDLV 202

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           VA+I+MAMGMMML P  +SLPFK++ FVL+DGW+L++ +L  SF
Sbjct: 203 VASILMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLIMGSLANSF 246


>gi|117926839|ref|YP_867456.1| flagellar biosynthesis protein FliP [Magnetococcus sp. MC-1]
 gi|117610595|gb|ABK46050.1| flagellar biosynthetic protein FliP [Magnetococcus sp. MC-1]
          Length = 260

 Score =  200 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 101/244 (41%), Positives = 147/244 (60%), Gaps = 9/244 (3%)

Query: 7   FALFLVTPELVFAKSSLHDVMNIPADLSIS-----TWIVRTFGIFTILSIAPILLIMVTC 61
           F + LV   L    +     +    +   +     +  ++     T+ S+AP +L+MVT 
Sbjct: 20  FMVLLVGDALAVEVNLPGLSLQGGGNPGDADPEQVSIALQILAFMTLFSLAPGILVMVTS 79

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F R I+V S +R  MG+   PPN V+I+LALF+T +VM P +D+  +  + P +N QI  
Sbjct: 80  FTRVIVVMSFVRQAMGLQGQPPNQVLIALALFVTMFVMGPVMDKVWDTALNPYLNKQIGG 139

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
             A      P   FM   TRE DL LFM +A        + K D    R++IP+FM+SEL
Sbjct: 140 EQAWDNAVIPVKDFMLRQTRESDLGLFMRLAG----MEQVEKRDEAPLRLVIPAFMVSEL 195

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
           + +F+IGF++ LPFLI+DM+VA++VM+MGMMMLPP  IS+P K+I FVL+DGW L+V +L
Sbjct: 196 KTAFQIGFMVYLPFLIVDMVVASVVMSMGMMMLPPLVISMPIKLILFVLVDGWVLVVGSL 255

Query: 242 VKSF 245
           V+SF
Sbjct: 256 VQSF 259


>gi|157164339|ref|YP_001466589.1| flagellar biosynthesis protein FliP [Campylobacter concisus 13826]
 gi|112800704|gb|EAT98048.1| flagellar biosynthetic protein FliP [Campylobacter concisus 13826]
          Length = 243

 Score =  200 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 108/242 (44%), Positives = 151/242 (62%), Gaps = 4/242 (1%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
                LF V      A  +++  +N P +       +    I T L++AP L+ M+T F 
Sbjct: 5   LSLAVLFCVVFGADPALPTINLSLNSPQNAEQLVNSLNVLLILTALALAPSLIFMMTSFL 64

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
           R +IVFS LR  MG   VPP+ V+ISLA+ +TF++M P   RS + GI+P +  QI    
Sbjct: 65  RLVIVFSFLRQAMGTQQVPPSTVLISLAMVLTFFIMEPVGQRSYDEGIKPYIAEQIGYEE 124

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
            + +  +PF  FM  NTREKDL+LF  + +  +        + I   I + +FMISEL+ 
Sbjct: 125 MLDKSLKPFKEFMVKNTREKDLALFFRIRNLQNP----ANIEDIPLSIAMSAFMISELKT 180

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
           SFEI FL+ LPFL+IDM+V++++MAMGMMMLPP  ISLPFK++ FVL+DGW+LL+ NLVK
Sbjct: 181 SFEIAFLLYLPFLVIDMVVSSVLMAMGMMMLPPVMISLPFKLLIFVLVDGWNLLIGNLVK 240

Query: 244 SF 245
           SF
Sbjct: 241 SF 242


>gi|254228804|ref|ZP_04922227.1| flagellar biosynthetic protein FliP [Vibrio sp. Ex25]
 gi|262396477|ref|YP_003288330.1| flagellar biosynthesis protein FliP [Vibrio sp. Ex25]
 gi|151938751|gb|EDN57586.1| flagellar biosynthetic protein FliP [Vibrio sp. Ex25]
 gi|262340071|gb|ACY53865.1| flagellar biosynthesis protein FliP [Vibrio sp. Ex25]
          Length = 252

 Score =  200 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 80/235 (34%), Positives = 129/235 (54%), Gaps = 4/235 (1%)

Query: 11  LVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
              P +          ++        +  ++   + T LS  P  ++M T F R I+V +
Sbjct: 21  FAFPTMAADNGLTILSVSDGDTQQEYSVKLQILLLMTALSFLPAFILMATSFTRIIVVLA 80

Query: 71  ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
           ILR  +G+   PPN V++ +AL +T  +M P      E   QP  N +IT   A     +
Sbjct: 81  ILRQALGLQQSPPNRVLVGIALALTLLIMRPVWSDIHENAFQPYDNGEITLIQAFSVAEK 140

Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
           P   FM   T +  L   + +A+         K + I + +++P+F+ISEL+ +F+IGF+
Sbjct: 141 PVREFMLAQTHQSSLEQMLRIANEPLD----QKVEDISFAVVLPAFVISELKTAFQIGFM 196

Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           + +PFL+ID++VA+++MAMGMMML P  +SLPFK++ FVL+DGW++ V  L  SF
Sbjct: 197 LFIPFLVIDLVVASVLMAMGMMMLSPLIVSLPFKLVVFVLVDGWAMTVGTLSASF 251


>gi|300024600|ref|YP_003757211.1| flagellar biosynthetic protein FliP [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299526421|gb|ADJ24890.1| flagellar biosynthetic protein FliP [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 247

 Score =  200 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 115/235 (48%), Positives = 166/235 (70%), Gaps = 2/235 (0%)

Query: 12  VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
           V P    A++   + +    D S+S  IV+   + T+LS+AP LL+MVT F RF+I  S 
Sbjct: 15  VMPTAALAQTIDLNTLFPAGDASVSGRIVQLLVVMTVLSVAPGLLMMVTSFARFVIALSF 74

Query: 72  LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
           LR+G+G+ + P N++++SLALFMT +VM+PT   + + G++P++ N+I++    QR  EP
Sbjct: 75  LRSGLGLQTTPSNMILVSLALFMTMFVMAPTFQAAWDNGVKPMVENKISQEEGYQRTTEP 134

Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
           F  FM+ N REKD+++F D++       +    D    R+LIP+FM+SELRR FEIGFL+
Sbjct: 135 FRAFMKANVREKDIAIFQDLSAERFGEANKAGPDD--LRVLIPAFMVSELRRGFEIGFLV 192

Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
            LPFL+ID++VATI+ +MGMMM+PPT +SLP K++FFVL+DGWSLLV  LVKSFI
Sbjct: 193 TLPFLVIDLVVATIMTSMGMMMMPPTVVSLPLKILFFVLVDGWSLLVGALVKSFI 247


>gi|91223205|ref|ZP_01258471.1| putative flagellar assembly protein [Vibrio alginolyticus 12G01]
 gi|269967106|ref|ZP_06181173.1| flagellar assembly protein [Vibrio alginolyticus 40B]
 gi|91192018|gb|EAS78281.1| putative flagellar assembly protein [Vibrio alginolyticus 12G01]
 gi|269828243|gb|EEZ82510.1| flagellar assembly protein [Vibrio alginolyticus 40B]
          Length = 252

 Score =  200 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 78/235 (33%), Positives = 128/235 (54%), Gaps = 4/235 (1%)

Query: 11  LVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
              P +          ++        +  ++   + T LS  P  ++M T F R ++V +
Sbjct: 21  FAFPTMAADNGLTILSVSDGDTQQEYSVKLQILLLMTALSFLPAFILMATSFTRIVVVLA 80

Query: 71  ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
           ILR  +G+   PPN V++ +AL +T  +M P      E   QP  N +IT   A     +
Sbjct: 81  ILRQALGLQQSPPNRVLVGIALALTLLIMRPVWSDIYENAFQPYDNGEITLIQAFSVAEK 140

Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
           P   FM   T +  L   + +A+           + I + +++P+F+ISEL+ +F+IGF+
Sbjct: 141 PVREFMLAQTHQSSLEQMLRIANEPLD----QNVEDISFAVVLPAFVISELKTAFQIGFM 196

Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           + +PFL+ID++VA+++MAMGMMML P  +SLPFK++ FVL+DGW++ V  L  SF
Sbjct: 197 LFIPFLVIDLVVASVLMAMGMMMLSPLIVSLPFKLVVFVLVDGWAMTVGTLSASF 251


>gi|289523556|ref|ZP_06440410.1| flagellar biosynthetic protein FliP [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289503248|gb|EFD24412.1| flagellar biosynthetic protein FliP [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 252

 Score =  200 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 85/224 (37%), Positives = 140/224 (62%), Gaps = 4/224 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           +L   +      S     ++   + TILS+AP +++MVT F R I+V   +R  +G+  +
Sbjct: 32  TLDINVRPGDSPSDVALTLQIIALITILSLAPAIVLMVTSFTRIIVVLGFVRQSIGLQQL 91

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PPN V+++LALF+TF+ MSP   +     I P M  +I    A  +   P   FM +  +
Sbjct: 92  PPNQVLVTLALFLTFFTMSPVWQKIYSESINPYMAGEIATQEAYAKAIGPIRDFMFSQVK 151

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           +++LSL + ++           +D +  R+LIP+FMI EL+++F++G LI +PF+++DMI
Sbjct: 152 DEELSLMVSLSDLPQP----QNHDDVPTRVLIPAFMIGELKKAFQMGILIFIPFIVVDMI 207

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           VA+++++MGM+MLPP  ISLPFKV+ FV+ DGW L++ ++V SF
Sbjct: 208 VASVLLSMGMIMLPPMLISLPFKVLLFVVADGWDLVIYSVVSSF 251


>gi|327481256|gb|AEA84566.1| flagellar biosynthesis protein FliP [Pseudomonas stutzeri DSM 4166]
          Length = 258

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 102/259 (39%), Positives = 147/259 (56%), Gaps = 18/259 (6%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSI--------------STWIVRTFGIF 46
           M+R    A  ++   L  A+     +      LSI               +  ++   I 
Sbjct: 1   MLRILLLATLMLVGPLAMAQEPSGILAQGNNPLSIPAITLTTDAEGQQEYSVSLQILLIM 60

Query: 47  TILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS 106
           T LS  P  ++++T F R IIVFSILR  +G+   P N ++I L LF+T ++M+P  DR 
Sbjct: 61  TALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILIGLTLFLTLFIMAPVFDRI 120

Query: 107 IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
            +  +QP ++ QI    AI R   P   FM   TRE DL LF+ ++      TDI   + 
Sbjct: 121 NQDALQPYLSEQIPAQEAIARAEVPLKNFMLAQTRESDLELFVRLSQR----TDIASPEA 176

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
               IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA+++MAMGMMML P  ISLPFK++
Sbjct: 177 APMTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIM 236

Query: 227 FFVLIDGWSLLVENLVKSF 245
            FVL+DGW L++  L  SF
Sbjct: 237 LFVLVDGWGLIIGTLAGSF 255


>gi|121533746|ref|ZP_01665573.1| flagellar biosynthetic protein FliP [Thermosinus carboxydivorans
           Nor1]
 gi|121307737|gb|EAX48652.1| flagellar biosynthetic protein FliP [Thermosinus carboxydivorans
           Nor1]
          Length = 253

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 98/249 (39%), Positives = 150/249 (60%), Gaps = 9/249 (3%)

Query: 2   IRYCFFALFLVTPELVFAKS-----SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILL 56
           + +   A +L       A       +L+  +    +       ++     T+LS+AP +L
Sbjct: 8   MLFAVMAAWLSVIATAQAAPLVPVPNLNIGVTSAENPKDVALSLQVLFTLTVLSLAPSIL 67

Query: 57  IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
           IM+T F R IIV S LR+ +     PPN V+I LALF+TFY MSP  D+  +  +QP + 
Sbjct: 68  IMMTSFTRIIIVLSFLRSALATQQTPPNQVLIGLALFLTFYTMSPYWDQINQNALQPYLA 127

Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
             I++ TA+    +P   FM   TRE DL+LF++++     N      + I    LIP+F
Sbjct: 128 GTISQDTAMSEAMKPLRQFMLKQTRENDLALFVNLSEGPRPN----SPEDITTSTLIPAF 183

Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
           +ISEL+ +F+IGFLI +PF++IDM+VA+ +M+MGMMM+PP  ISLPFK++ F+L+DGW L
Sbjct: 184 IISELKTAFQIGFLIYIPFIVIDMVVASTLMSMGMMMVPPVMISLPFKLLLFILVDGWHL 243

Query: 237 LVENLVKSF 245
           ++ +L+ SF
Sbjct: 244 IIRSLITSF 252


>gi|323490154|ref|ZP_08095374.1| flagellar biosynthesis protein FliP [Planococcus donghaensis
           MPA1U2]
 gi|323396202|gb|EGA89028.1| flagellar biosynthesis protein FliP [Planococcus donghaensis
           MPA1U2]
          Length = 229

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 94/194 (48%), Positives = 134/194 (69%), Gaps = 4/194 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +LIM+T F R IIV S +RTG+G  S+PPN V++ LALF+TF++MSP +    +  +
Sbjct: 40  APGILIMMTSFTRIIIVLSFVRTGLGTQSMPPNQVLVGLALFLTFFIMSPIVVEMNDTAL 99

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           QP ++ ++ +  A+     P   FM  NTREKDL+LF   A     +      + I    
Sbjct: 100 QPYLDGEMEQQEALDTAVVPLKEFMAKNTREKDLALFFKYAELEKPD----SIEEIPLTS 155

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           L+P+F ISE++ +F+IGF+I +PFLIIDM+VA+ +MAMGMMMLPP  ISLPFK++ FVL+
Sbjct: 156 LVPAFAISEMKTAFQIGFVIFIPFLIIDMVVASTLMAMGMMMLPPVMISLPFKILLFVLV 215

Query: 232 DGWSLLVENLVKSF 245
           DGW L++E+L+ SF
Sbjct: 216 DGWYLIIESLLVSF 229


>gi|153213266|ref|ZP_01948678.1| flagellar biosynthetic protein FliP [Vibrio cholerae 1587]
 gi|124116066|gb|EAY34886.1| flagellar biosynthetic protein FliP [Vibrio cholerae 1587]
          Length = 287

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 89/206 (43%), Positives = 135/206 (65%), Gaps = 5/206 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   + T+L   P ++I++T F R ++V SILR  MG+   P N VII +ALF+TF++M
Sbjct: 85  LQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIALFLTFFIM 144

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +P  ++  E  +QP +N QIT   A     EP   FM   TR  DL  F++M+       
Sbjct: 145 APVFNQINEQAVQPYLNEQITARQAFDLAQEPLKAFMLKQTRVNDLETFVEMSG-----A 199

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGMMML P  +
Sbjct: 200 QVTAPEQVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGMMMLSPMIV 259

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 260 SLPFKLMLFVLVDGWNLILSTLAGSF 285


>gi|317133473|ref|YP_004092787.1| flagellar biosynthetic protein FliP [Ethanoligenens harbinense
           YUAN-3]
 gi|315471452|gb|ADU28056.1| flagellar biosynthetic protein FliP [Ethanoligenens harbinense
           YUAN-3]
          Length = 267

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 97/242 (40%), Positives = 141/242 (58%), Gaps = 4/242 (1%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
           +C             +   +   +N     S +   ++   + T++++AP +LIM+T F 
Sbjct: 29  FCIVFSVGFAVSAASSDPGISLTLNGLTTPSGTANTLQILLLLTLIALAPSILIMMTSFT 88

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
           R II  S LR  +G    PPN V++ +ALF++ ++MSP +++      QPL+N QIT   
Sbjct: 89  RIIIFLSFLRNALGTQQTPPNQVLVGIALFLSLFIMSPVINQINTTAYQPLVNGQITTEQ 148

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
           A     +P   FM   T    L  F+ MA +      +   D+I   +LIP+F+ISEL+R
Sbjct: 149 AEVNAMKPLRQFMFKQTENASLKTFLSMAGTP----TVKSLDNIPNSVLIPAFVISELKR 204

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
           +F +GFLI LPFLIID+IV T +M+MGMMMLPPT ISLP K+  FVL+DGW L V++LV 
Sbjct: 205 AFMMGFLIYLPFLIIDVIVGTTLMSMGMMMLPPTMISLPLKLALFVLVDGWGLTVQSLVY 264

Query: 244 SF 245
           SF
Sbjct: 265 SF 266


>gi|28901397|ref|NP_801052.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153835929|ref|ZP_01988596.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus
           AQ3810]
 gi|260362951|ref|ZP_05775820.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus K5030]
 gi|260880238|ref|ZP_05892593.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus
           AN-5034]
 gi|260895355|ref|ZP_05903851.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus
           Peru-466]
 gi|28809944|dbj|BAC62885.1| putative flagellar assembly protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149750683|gb|EDM61428.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus
           AQ3810]
 gi|308085562|gb|EFO35257.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus
           Peru-466]
 gi|308092077|gb|EFO41772.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus
           AN-5034]
 gi|308112304|gb|EFO49844.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus K5030]
 gi|328469331|gb|EGF40277.1| flagellar biosynthesis protein FliP [Vibrio parahaemolyticus 10329]
          Length = 252

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 81/235 (34%), Positives = 128/235 (54%), Gaps = 4/235 (1%)

Query: 11  LVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
              P +          +         +  ++   + T LS  P  ++M T F R I+V +
Sbjct: 21  FAFPTMAADNGLTILSVTDGDAQQEYSVKLQILLLMTALSFLPAFILMATSFTRIIVVLA 80

Query: 71  ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
           ILR  +G+   PPN V++ +AL +T  +M P      E   QP  N +IT   A     +
Sbjct: 81  ILRQALGLQQSPPNRVLVGIALTLTLLIMRPVWTDIYENAFQPYDNGEITLVQAFSVAEK 140

Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
           P   FM   T +  L   + +A+         K + I + +++P+F+ISEL+ +F+IGF+
Sbjct: 141 PVRNFMLAQTHQSSLEQMLRIANEPLD----QKVEDISFAVVLPAFVISELKTAFQIGFM 196

Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           + +PFLIID++VA+++MAMGMMML P  +SLPFK++ FVL+DGW++ V  L  SF
Sbjct: 197 LFIPFLIIDLVVASVLMAMGMMMLSPLIVSLPFKLVVFVLVDGWAMTVGTLSASF 251


>gi|326204610|ref|ZP_08194466.1| flagellar biosynthetic protein FliP [Clostridium papyrosolvens DSM
           2782]
 gi|325985177|gb|EGD46017.1| flagellar biosynthetic protein FliP [Clostridium papyrosolvens DSM
           2782]
          Length = 243

 Score =  199 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 98/239 (41%), Positives = 143/239 (59%), Gaps = 7/239 (2%)

Query: 11  LVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
           L  P +   K  ++  +    +    +  ++     T+LSIAP +LIM+T F R II+ S
Sbjct: 6   LAEPTVSVTKDGVN--IGASTNPKEVSSSIQLLIALTVLSIAPSILIMMTGFTRIIIILS 63

Query: 71  ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
            LR  +G   +PPN V+I LALF+T +VMSP L    E   QP  N +IT+  AI + ++
Sbjct: 64  FLRNALGTQQMPPNQVLIGLALFITLFVMSPVLSDINENAFQPYTNGKITQQQAIDKSSQ 123

Query: 131 PFWVFMRNNT----REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
               +M        REKDL LFM +         +     +   ++ P+F+ISEL  +F+
Sbjct: 124 SIKTWMVKQIFSNKREKDLELFMTLGGQKEP-VKVQDASKLSLTMVAPAFLISELTVAFK 182

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            GFLI LPFLIIDM+V++ +M+MGMMMLPP  ISLPFK++ FVL+DGWS+L ++++ SF
Sbjct: 183 FGFLIFLPFLIIDMVVSSALMSMGMMMLPPIMISLPFKILLFVLVDGWSMLTQSIITSF 241


>gi|288553049|ref|YP_003424984.1| flagellar biosynthesis protein FliP [Bacillus pseudofirmus OF4]
 gi|288544209|gb|ADC48092.1| flagellar biosynthesis protein FliP [Bacillus pseudofirmus OF4]
          Length = 234

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 99/229 (43%), Positives = 148/229 (64%), Gaps = 4/229 (1%)

Query: 17  VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
              +    D+  +  D +     ++   + T+LS+AP +LI++T F R +IV S +R G+
Sbjct: 9   AITQIPGLDLDFLSEDPANVATTIQLLIVLTVLSLAPGILILMTSFTRIVIVLSFVRQGL 68

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
              S+PPN V+I LALF+TF++M+P      E  + P +  ++T+  A+++ A P   FM
Sbjct: 69  ATQSMPPNQVLIGLALFLTFFIMAPIFAEVNEQALTPFLEGELTQEEALEQAAVPMKEFM 128

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
             +TREKDL+LFM  A            D I    LIP+F ISEL+ +F+IGFLI +PFL
Sbjct: 129 AQHTREKDLALFMGYAGMDRPE----SLDDIPLTALIPAFAISELKTAFQIGFLIFVPFL 184

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +IDMIVA+++M+MGMMMLPP  I+LPFK++ FVL+DGW L+V++L+ SF
Sbjct: 185 VIDMIVASVLMSMGMMMLPPVMIALPFKILLFVLVDGWYLIVQSLLLSF 233


>gi|126665005|ref|ZP_01735988.1| flagellar biosynthetic protein FliP [Marinobacter sp. ELB17]
 gi|126630375|gb|EBA00990.1| flagellar biosynthetic protein FliP [Marinobacter sp. ELB17]
          Length = 259

 Score =  199 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 94/244 (38%), Positives = 147/244 (60%), Gaps = 8/244 (3%)

Query: 5   CFFALFLVTPELVFAKSSLHDVMNIPADLSIS---TWIVRTFGIFTILSIAPILLIMVTC 61
              A  +  P        +      P         +  ++   + T L+  P +L+M+T 
Sbjct: 19  IVIAAMVWAPLAQADLPGIPAFTVEPGAGEGQQEYSVTLQILALMTALTFLPAMLMMMTS 78

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F R IIVFSILR  +G+ S P N +++ LALF+T ++M P L+ +  +G+QP +  ++T 
Sbjct: 79  FTRIIIVFSILRQALGLQSAPSNQILLGLALFLTIFIMKPVLEEANRVGLQPYLQEELTS 138

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
             A++  +EPF  FM   TRE DL LFM MA     +      + + + +L+P+F+ SEL
Sbjct: 139 LEAVEAASEPFKQFMLAQTRESDLGLFMRMA-----DEQFASPEDVTFWVLLPAFVTSEL 193

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
           + +F+IGF++ +PFLIIDM+VA+++MAMGMMML P  ISLPFK++ FVL+DGW+L++  L
Sbjct: 194 KTAFQIGFILFIPFLIIDMVVASVLMAMGMMMLSPIIISLPFKIMLFVLVDGWALIMGTL 253

Query: 242 VKSF 245
             S+
Sbjct: 254 AASY 257


>gi|330808228|ref|YP_004352690.1| flagellar biosynthetic protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376336|gb|AEA67686.1| Flagellar biosynthetic protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 249

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 92/220 (41%), Positives = 136/220 (61%), Gaps = 4/220 (1%)

Query: 26  VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
           +          +  ++   I T LS  P  ++++T F R IIVFSILR  +G+   P N 
Sbjct: 31  LGTNAEGAQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQ 90

Query: 86  VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145
           ++  +ALF+T ++M+P  DR  +  +QP +  +IT   A+ +   P   FM   TR  DL
Sbjct: 91  ILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKITAQDAVAKAEVPIKDFMLAQTRSSDL 150

Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
            LFM ++    + TDI   D     IL+P+F+ SEL+ +F+IGF+I +PFLIID++VA+I
Sbjct: 151 ELFMRLS----KRTDIPSADQAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASI 206

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +MAMGMMML P  ISLPFK++ FVL+DGW+L++  L  SF
Sbjct: 207 LMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLAGSF 246


>gi|307546958|ref|YP_003899437.1| flagellar biosynthesis protein FliP [Halomonas elongata DSM 2581]
 gi|307218982|emb|CBV44252.1| flagellar biosynthesis protein FliP [Halomonas elongata DSM 2581]
          Length = 273

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 90/228 (39%), Positives = 138/228 (60%), Gaps = 6/228 (2%)

Query: 20  KSSLHDVMNIPADLSISTWIVRTFGIFTI--LSIAPILLIMVTCFPRFIIVFSILRTGMG 77
              +  +++ P +     W +    +  +  ++  P  L+M+T F R IIV S+LRT MG
Sbjct: 48  AQQIPGIISEPMEDGGQKWSLSLQTLLLLSSMAFLPAALLMMTSFTRIIIVLSLLRTAMG 107

Query: 78  MGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMR 137
             + PPN V++ LALF+TF++M+P           PL N  I     +++   P   FM 
Sbjct: 108 TQATPPNQVLLGLALFLTFFIMAPVFGEVHAQAWVPLSNGDINFPEFLRQAQGPLREFMM 167

Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197
             TRE DL+LF  +A       ++     +  RIL+PSF+ SEL+ +F+IGF I +PFLI
Sbjct: 168 AQTREPDLALFARLADIG----ELQGPADVPMRILVPSFVTSELKTAFQIGFTIFIPFLI 223

Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ID++VA+ +M++GMMM+PP +ISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 224 IDLVVASTLMSLGMMMVPPITISLPFKLMLFVLVDGWQLLIGSLAESF 271


>gi|330953762|gb|EGH54022.1| flagellar biosynthesis protein FliP [Pseudomonas syringae Cit 7]
          Length = 250

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 95/239 (39%), Positives = 144/239 (60%), Gaps = 7/239 (2%)

Query: 10  FLVTPELVFAKSSLHDVMNIPADLSIS---TWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
            +VTP  + A       + +          +  ++   I T LS  P  ++++T F R I
Sbjct: 13  VMVTPAALAADPLSIQAITLSNGADGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRII 72

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IVFSILR  +G+   P N ++  +ALF+T ++M+P  DR  +  +QP +  +++   A+ 
Sbjct: 73  IVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKLSAQDAVA 132

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           +   P   FM   TR  DL LFM ++    + TDI   D     IL+P+F+ISEL+ +F+
Sbjct: 133 KAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTPDAAPLTILVPAFVISELKTAFQ 188

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGF+I +PFLIID++VA+++MAMGMMML P  ISLPFK++ FVL+DGW+L+V  L  SF
Sbjct: 189 IGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIVGTLAGSF 247


>gi|302185375|ref|ZP_07262048.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           syringae 642]
          Length = 250

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 95/239 (39%), Positives = 144/239 (60%), Gaps = 7/239 (2%)

Query: 10  FLVTPELVFAKSSLHDVMNIPADLSIS---TWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
            +VTP  + A       + +          +  ++   I T LS  P  ++++T F R I
Sbjct: 13  VMVTPAALAADPLSIPAITLSNGTDGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRII 72

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IVFSILR  +G+   P N ++  +ALF+T ++M+P  DR  +  +QP +  +++   A+ 
Sbjct: 73  IVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKLSAQDAVA 132

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           +   P   FM   TR  DL LFM ++    + TDI   D     IL+P+F+ISEL+ +F+
Sbjct: 133 KAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTPDAAPLTILVPAFVISELKTAFQ 188

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGF+I +PFLIID++VA+++MAMGMMML P  ISLPFK++ FVL+DGW+L+V  L  SF
Sbjct: 189 IGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIVGTLAGSF 247


>gi|52080238|ref|YP_079029.1| flagellar biosynthesis protein FliP [Bacillus licheniformis ATCC
           14580]
 gi|52785615|ref|YP_091444.1| flagellar biosynthesis protein FliP [Bacillus licheniformis ATCC
           14580]
 gi|319645983|ref|ZP_08000213.1| FliP protein [Bacillus sp. BT1B_CT2]
 gi|52003449|gb|AAU23391.1| flagellar protein [Bacillus licheniformis ATCC 14580]
 gi|52348117|gb|AAU40751.1| FliP [Bacillus licheniformis ATCC 14580]
 gi|317391733|gb|EFV72530.1| FliP protein [Bacillus sp. BT1B_CT2]
          Length = 221

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 100/215 (46%), Positives = 148/215 (68%), Gaps = 4/215 (1%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
           +D +  +  VR   + T+ SIAP +LI++TCF R +IV S +RT +   S+PPN V+I L
Sbjct: 11  SDAANVSASVRLLLLLTVFSIAPGILILMTCFTRVVIVLSFVRTSLATQSMPPNQVLIGL 70

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           ALF+TF++M PT     +  + PLMNN+IT   A  +   P   FM  +TR+KDL+LFM+
Sbjct: 71  ALFLTFFIMGPTFSEINKEALTPLMNNKITLDEAYTKAEAPIKTFMSKHTRQKDLALFMN 130

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
            A            + I    ++P+F+ISEL+ +F++GF+I +PFLIIDM+VA+++M+MG
Sbjct: 131 YAKMETPE----SINDIPLSTMVPAFVISELKTAFQMGFMIFIPFLIIDMVVASVLMSMG 186

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMMLPP  ISLPFK++ FVL+DGW L+V++L++SF
Sbjct: 187 MMMLPPVMISLPFKILLFVLVDGWYLIVKSLLQSF 221


>gi|260901180|ref|ZP_05909575.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus
           AQ4037]
 gi|308109389|gb|EFO46929.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus
           AQ4037]
          Length = 252

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 81/235 (34%), Positives = 128/235 (54%), Gaps = 4/235 (1%)

Query: 11  LVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
              P +          +         +  ++   + T LS  P  ++M T F R I+V +
Sbjct: 21  FAFPTMAADNGLTILSVTDGDAQQEYSVKLQILLLMTALSFLPAFILMATSFTRIIVVLA 80

Query: 71  ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
           ILR  +G+   PPN V++ +AL +T  +M P      E   QP  N +IT   A     +
Sbjct: 81  ILRQALGLQQSPPNRVLVGIALTLTLLIMRPVWTDIYENAFQPYDNGEITLVQAFSVAEK 140

Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
           P   FM   T +  L   + +A+         K + I + +++P+F+ISEL+ +F+IGF+
Sbjct: 141 PVRNFMLAQTHQSSLEQMLRIANEPLD----QKLEDISFAVVLPAFVISELKTAFQIGFM 196

Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           + +PFLIID++VA+++MAMGMMML P  +SLPFK++ FVL+DGW++ V  L  SF
Sbjct: 197 LFIPFLIIDLVVASVLMAMGMMMLSPLIVSLPFKLVVFVLVDGWAMTVGTLSASF 251


>gi|260768789|ref|ZP_05877723.1| flagellar biosynthesis protein FliP [Vibrio furnissii CIP 102972]
 gi|260616819|gb|EEX42004.1| flagellar biosynthesis protein FliP [Vibrio furnissii CIP 102972]
 gi|315180492|gb|ADT87406.1| flagellar biosynthesis protein P [Vibrio furnissii NCTC 11218]
          Length = 249

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 89/242 (36%), Positives = 140/242 (57%), Gaps = 4/242 (1%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
           +    L +  P    A+      ++  +  S  +  ++   + T+LS  P  +IM TCF 
Sbjct: 8   WLVAILLVGLPSWASAQDISLFTIHDASGTSEYSAKLQILIMMTMLSFVPAFIIMCTCFT 67

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
           R IIV SILR  +G+   PPN V++ LAL  T  +M P          QP M  +IT + 
Sbjct: 68  RIIIVLSILRQALGLQQSPPNQVLVGLALVFTLLIMRPVWTEIYADAYQPYMQEKITLSE 127

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
           AI   A+P   +M   T+ + L     +A  S        +D I + IL+P++++SEL+ 
Sbjct: 128 AISTGAKPLHHYMLAQTQVQTLEQVTKIAGESL----AENDDDIPFLILLPAYVLSELKI 183

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
           +F+IGF++ LPFL+ID++VA+++M+MGMMML P  +SLPFK++ FV++DGW +LV +L +
Sbjct: 184 AFQIGFMVFLPFLVIDLVVASVLMSMGMMMLSPLIVSLPFKLLVFVVVDGWGMLVSSLSQ 243

Query: 244 SF 245
           SF
Sbjct: 244 SF 245


>gi|258624667|ref|ZP_05719602.1| flagellar assembly protein [Vibrio mimicus VM603]
 gi|258583059|gb|EEW07873.1| flagellar assembly protein [Vibrio mimicus VM603]
          Length = 256

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 83/241 (34%), Positives = 131/241 (54%), Gaps = 4/241 (1%)

Query: 5   CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
                 +V P            ++  A     +  ++   + T LS  P  ++M T F R
Sbjct: 19  ILAFCLVVFPTYAADNGLTILSVSDGATEQEYSVKLQILLLMTALSFLPAFILMATSFTR 78

Query: 65  FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
            I+V +ILR  +G+   PPN V++ +AL +T  +M P      +   QP  N +IT   A
Sbjct: 79  IIVVLAILRQALGLQQTPPNRVLVGIALTLTLLIMRPVWTDIYKNAFQPYDNGEITLVQA 138

Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
                +P   FM   T +  L   + +A+           + I + I++P+F+ISEL+ +
Sbjct: 139 FSVAEKPVREFMLAQTHQNSLEQMLRIANEPID----QNVEDISFAIVLPAFVISELKTA 194

Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           F+IGF++ +PFLIID++VA+++MAMGMMML P  ISLPFK++ FVL+DGW++ V +L  S
Sbjct: 195 FQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKLVVFVLVDGWAMTVGSLSAS 254

Query: 245 F 245
           F
Sbjct: 255 F 255


>gi|66046673|ref|YP_236514.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           syringae B728a]
 gi|289678972|ref|ZP_06499862.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           syringae FF5]
 gi|63257380|gb|AAY38476.1| Flagellar transport protein FliP [Pseudomonas syringae pv. syringae
           B728a]
 gi|330899441|gb|EGH30860.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           japonica str. M301072PT]
 gi|330976008|gb|EGH76074.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 250

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 95/239 (39%), Positives = 144/239 (60%), Gaps = 7/239 (2%)

Query: 10  FLVTPELVFAKSSLHDVMNIPADLSIS---TWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
            +VTP  + A       + +          +  ++   I T LS  P  ++++T F R I
Sbjct: 13  VMVTPAALAADPLSIPAITLSNGADGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRII 72

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IVFSILR  +G+   P N ++  +ALF+T ++M+P  DR  +  +QP +  +++   A+ 
Sbjct: 73  IVFSILRQALGLQQAPSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKLSAQDAVA 132

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           +   P   FM   TR  DL LFM ++    + TDI   D     IL+P+F+ISEL+ +F+
Sbjct: 133 KAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTPDAAPLTILVPAFVISELKTAFQ 188

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGF+I +PFLIID++VA+++MAMGMMML P  ISLPFK++ FVL+DGW+L+V  L  SF
Sbjct: 189 IGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIVGTLAGSF 247


>gi|218288310|ref|ZP_03492609.1| flagellar biosynthetic protein FliP [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218241669|gb|EED08842.1| flagellar biosynthetic protein FliP [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 272

 Score =  199 bits (505), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 97/249 (38%), Positives = 151/249 (60%), Gaps = 7/249 (2%)

Query: 4   YCFFALFLVTPELVFAKSSLHD-------VMNIPADLSISTWIVRTFGIFTILSIAPILL 56
           +    +    P  V A++S          V    +  +     V+   + T L++AP  L
Sbjct: 22  WMAVFIMCFHPSFVHAQTSPSAPAIPGVSVSVGGSGPTSVANTVKIVLLLTALTLAPAAL 81

Query: 57  IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
           I++TCF R I+V S +R  + + + PPN V++ LALF+T +VM PTL ++    +QP + 
Sbjct: 82  ILMTCFTRVIVVLSFVRNALSLQTSPPNQVLVGLALFITLFVMQPTLQQANTQALQPYLR 141

Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
            QI++T AI+R   PF VFM   TR +DL LF+   H +         + I    L+P+F
Sbjct: 142 GQISQTAAIERAEAPFKVFMAKQTRAQDLELFLAYRHETLTAEMERHPEAIAMSALVPAF 201

Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
            +SEL+ +F+IGF+I LPFL+ID++V+T +M+MGMMMLPP  ISLPFKV+ FV+++GW L
Sbjct: 202 TLSELQTAFQIGFMIYLPFLVIDLVVSTTLMSMGMMMLPPVMISLPFKVLLFVMVNGWYL 261

Query: 237 LVENLVKSF 245
           +V++L+  +
Sbjct: 262 VVKSLLAGY 270


>gi|120554901|ref|YP_959252.1| flagellar biosynthesis protein FliP [Marinobacter aquaeolei VT8]
 gi|120324750|gb|ABM19065.1| flagellar biosynthetic protein FliP [Marinobacter aquaeolei VT8]
          Length = 253

 Score =  199 bits (505), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 90/247 (36%), Positives = 152/247 (61%), Gaps = 10/247 (4%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTW-----IVRTFGIFTILSIAPILLIM 58
           + + AL         A++ L  +     +   +        ++   + T L+  P +L+M
Sbjct: 10  FPWLALIAGLCLPALAQADLPGIPAFTVEPGENGTEEYSVTLQILALMTALTFLPAMLMM 69

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R I+VF+ILR  +G+ + P N +++ LALF++ ++M P L+ +  +G+QP +  +
Sbjct: 70  MTSFTRIIVVFAILRQALGLQATPSNQILLGLALFLSIFIMKPVLEEANRVGLQPYLQEE 129

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           +T   A++  ++PF  FM   TRE DL+LFM +A   +          + + IL+P+F+ 
Sbjct: 130 VTSLEAVELASQPFRKFMLEQTREDDLALFMRIADVQY-----ETPQDVSFWILMPAFVT 184

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF++ +PFLIIDM+VA+++MAMGMMML P  ISLPFK++ FVL+DGW+L++
Sbjct: 185 SELKTAFQIGFILFIPFLIIDMVVASVLMAMGMMMLSPIIISLPFKIMLFVLVDGWALIM 244

Query: 239 ENLVKSF 245
             L  S+
Sbjct: 245 GTLAASY 251


>gi|330972449|gb|EGH72515.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 250

 Score =  199 bits (505), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 96/239 (40%), Positives = 144/239 (60%), Gaps = 7/239 (2%)

Query: 10  FLVTPELVFAKSSLHDVMNIPADLSIS---TWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
            +VTP  + A       + +          +  ++   I T LS  P  ++++T F R I
Sbjct: 13  VMVTPAALAADPLSIPAITLSNGADGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRII 72

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IVFSILR  +G+   P N ++  +ALF+T ++M+P  DR  +  +QP +  +++   A+ 
Sbjct: 73  IVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKLSAQDAVA 132

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           +   P   FM   TR  DL LFM ++    + TDI   D     IL+P+F+ISEL+ +F+
Sbjct: 133 KAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTPDAAPLTILVPAFVISELKTAFQ 188

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGF+I +PFLIIDM+VA+++MAMGMMML P  ISLPFK++ FVL+DGW+L+V  L  SF
Sbjct: 189 IGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIVGTLAGSF 247


>gi|134095087|ref|YP_001100162.1| flagellar biosynthesis protein FliP [Herminiimonas arsenicoxydans]
 gi|133738990|emb|CAL62038.1| Flagellar biosynthetic protein FliP Precursor [Herminiimonas
           arsenicoxydans]
          Length = 252

 Score =  199 bits (505), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 92/233 (39%), Positives = 143/233 (61%), Gaps = 6/233 (2%)

Query: 15  ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIA--PILLIMVTCFPRFIIVFSIL 72
             +  ++ L  + + P      T+ +    +  +  ++  P +L+M+T F R IIV S+L
Sbjct: 23  AAMAQQAGLPALTSTPTPGGGQTYSLSLQTLLLLTGLSFLPAVLLMMTSFTRIIIVLSLL 82

Query: 73  RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132
           R  +G  S PPN VII L+LF+T +VMSP LD+      QP   N+I    A+ +   P 
Sbjct: 83  RQALGTQSSPPNQVIIGLSLFLTLFVMSPVLDKIYVDAYQPFSANKIQMGEALDKAVAPL 142

Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192
             FM   TRE DL+L++ M+       ++   + I  RIL+P+F+ SEL+ +F+I F I 
Sbjct: 143 KTFMIKQTRESDLALYVKMSKGP----ELQGPEDIPLRILVPAFITSELKTAFQISFAIF 198

Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +PFLIIDM+VA+++M+MGMMM+ P  ++LPFK++ FVL+DGW LL+ +L +SF
Sbjct: 199 IPFLIIDMVVASVLMSMGMMMVSPAIVALPFKLMLFVLVDGWQLLIGSLAQSF 251


>gi|331006679|ref|ZP_08329957.1| Flagellar biosynthesis protein fliP [gamma proteobacterium
           IMCC1989]
 gi|330419511|gb|EGG93899.1| Flagellar biosynthesis protein fliP [gamma proteobacterium
           IMCC1989]
          Length = 280

 Score =  199 bits (505), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 95/229 (41%), Positives = 143/229 (62%), Gaps = 4/229 (1%)

Query: 17  VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
            F   S   +          +  ++   + T L+  P +LIM+T F R IIVF+ILR  +
Sbjct: 54  SFPSLSAITLTTNEDGTQEYSVSIQVLLLMTTLTFIPAILIMMTSFTRIIIVFAILRQAL 113

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G+   P N ++I + LF+T ++M+P ++   E  +QP +  QIT   AI +V EPF  FM
Sbjct: 114 GLQQSPSNQILIGMTLFLTLFIMTPVINEVNEQALQPYIAEQITSDQAIDKVIEPFHRFM 173

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
              TRE DL LFMD+A+       +   + +   +LIPSF+ SEL+ +F+IGF++ +PFL
Sbjct: 174 IGQTRESDLKLFMDIANVP----AVDTREEVPLTVLIPSFITSELKTAFQIGFILFIPFL 229

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +ID++VA+++MAMGMMML P  ISLPFK++ FVL+DGW++L+  L  SF
Sbjct: 230 VIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWAMLMGTLAASF 278


>gi|330940696|gb|EGH43707.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 250

 Score =  199 bits (505), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 96/239 (40%), Positives = 144/239 (60%), Gaps = 7/239 (2%)

Query: 10  FLVTPELVFAKSSLHDVMNIPADLSIS---TWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
            +VTP  + A       + +          +  ++   I T LS  P  ++++T F R I
Sbjct: 13  VMVTPAALAADPLSIPAITLSNGADGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRII 72

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IVFSILR  +G+   P N ++  +ALF+T ++M+P  DR  +  +QP +  +++   A+ 
Sbjct: 73  IVFSILRQALGLQQAPSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKLSAQDAVA 132

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           +   P   FM   TR  DL LFM ++    + TDI   D     IL+P+F+ISEL+ +F+
Sbjct: 133 KAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTPDAAPLTILVPAFVISELKTAFQ 188

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGF+I +PFLIIDM+VA+++MAMGMMML P  ISLPFK++ FVL+DGW+L+V  L  SF
Sbjct: 189 IGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIVGTLAGSF 247


>gi|257484903|ref|ZP_05638944.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|289629020|ref|ZP_06461974.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289651610|ref|ZP_06482953.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298487821|ref|ZP_07005861.1| Flagellar biosynthesis protein fliP [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157546|gb|EFH98626.1| Flagellar biosynthesis protein fliP [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330866458|gb|EGH01167.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330986502|gb|EGH84605.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331011077|gb|EGH91133.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 250

 Score =  199 bits (505), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 98/248 (39%), Positives = 147/248 (59%), Gaps = 8/248 (3%)

Query: 2   IRYCFFALFLVTPELVFAKSSLH----DVMNIPADLSISTWIVRTFGIFTILSIAPILLI 57
           +R+    L ++    V A   L      + N        +  ++   I T LS  P  ++
Sbjct: 4   LRFVILLLLVMVTPAVLAADPLSIPAITLSNGADGQQEYSVSLQILLIMTALSFIPAFVM 63

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           ++T F R IIVFSILR  +G+   P N ++  +ALF+T ++M+P  DR  +  +QP +  
Sbjct: 64  LMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAE 123

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
           ++T   A+ +   P   FM   TR  DL LFM ++    + TDI   D     IL+P+F+
Sbjct: 124 KLTAQDAVAKAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTPDAAPLTILVPAFV 179

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
           ISEL+ +F+IGF+I +PFLIID++VA+++MAMGMMML P  ISLPFK++ FVL+DGW+L+
Sbjct: 180 ISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALI 239

Query: 238 VENLVKSF 245
           V  L  SF
Sbjct: 240 VGTLAGSF 247


>gi|305674368|ref|YP_003866040.1| flagellar export machinery protein [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|305412612|gb|ADM37731.1| component of the flagellar export machinery [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 221

 Score =  199 bits (505), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 95/217 (43%), Positives = 144/217 (66%), Gaps = 4/217 (1%)

Query: 29  IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
             +D    +  V+   + T+ S+AP +LI++TCF R +IV S +RT +   S+PPN V+I
Sbjct: 9   SSSDPENVSSTVKLLLLLTVFSVAPGILILMTCFTRIVIVLSFVRTSLATQSMPPNQVLI 68

Query: 89  SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
            LALF+TF++M+PT     +  + PLM+N+I+   A  +  EP   FM  +TR+KDL+LF
Sbjct: 69  GLALFLTFFIMAPTFSEINKEALTPLMDNKISLDEAYSKAEEPIKEFMSKHTRQKDLALF 128

Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
           M+ A              I    ++P+F    L+ +F+IGF+I +PFLIIDM+VA+++M+
Sbjct: 129 MNYAKMDKPE----SLKDIPLTTMVPAFATPILKTAFQIGFMIFIPFLIIDMVVASVLMS 184

Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MGMMMLPP  ISLPFK++ FVL+DGW L+V++L++SF
Sbjct: 185 MGMMMLPPVMISLPFKILLFVLVDGWYLIVKSLLQSF 221


>gi|71735211|ref|YP_275528.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555764|gb|AAZ34975.1| flagellar biosynthetic protein FliP [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320325127|gb|EFW81196.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329386|gb|EFW85379.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330889047|gb|EGH21708.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 250

 Score =  199 bits (505), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 97/248 (39%), Positives = 147/248 (59%), Gaps = 8/248 (3%)

Query: 2   IRYCFFALFLVTPELVFAKSSLH----DVMNIPADLSISTWIVRTFGIFTILSIAPILLI 57
           +R+    L ++    V A   L      + N        +  ++   I T LS  P  ++
Sbjct: 4   LRFVILLLLVMVTPAVLAADPLSIPAITLSNGADGQQEYSVSLQILLIMTALSFIPAFVM 63

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           ++T F R IIVFSILR  +G+   P N ++  +ALF+T ++M+P  DR  +  +QP +  
Sbjct: 64  LMTSFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAE 123

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
           +++   A+ +   P   FM   TR  DL LFM ++    + TDI   D     IL+P+F+
Sbjct: 124 KLSAQDAVAKAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTPDAAPLTILVPAFV 179

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
           ISEL+ +F+IGF+I +PFLIID++VA+++MAMGMMML P  ISLPFK++ FVL+DGW+L+
Sbjct: 180 ISELKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALI 239

Query: 238 VENLVKSF 245
           V  L  SF
Sbjct: 240 VGTLAGSF 247


>gi|88858098|ref|ZP_01132740.1| flagellar biosynthesis [Pseudoalteromonas tunicata D2]
 gi|88819715|gb|EAR29528.1| flagellar biosynthesis [Pseudoalteromonas tunicata D2]
          Length = 247

 Score =  199 bits (505), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 91/247 (36%), Positives = 148/247 (59%), Gaps = 6/247 (2%)

Query: 1   MIRYC-FFALFLVTPELVFAKSSLHDVMNIPADLSI-STWIVRTFGIFTILSIAPILLIM 58
           MI++    ALF ++P L   +      +   AD +   +  ++   I T LS  P  +IM
Sbjct: 1   MIKWIILIALFTLSPSLSAEQGLQALTVTTNADGTQDYSVSLQVLAIMTALSFIPAAVIM 60

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R I+V +ILR  +G+ S P N V++ +++FM+ ++M+P   +  E  I P +  +
Sbjct: 61  MTSFTRIIVVLAILRQAIGLQSTPSNQVLVGMSVFMSIFIMAPIYQQIHEAAIDPYLKEE 120

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           +T   A+++  +P   FM   TR  DL  F  +A        + K +   + ++IP+F+ 
Sbjct: 121 LTSIQALEKAKDPLKTFMLRQTRISDLETFAQIAGLEK----LDKPEDAPFIVVIPAFIT 176

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F IGF+  +PFLI+D++VA+++MAMGMMML P  +SLPFK++ FVL+DGWSL++
Sbjct: 177 SELQTAFIIGFMFFIPFLIVDLVVASVLMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVM 236

Query: 239 ENLVKSF 245
             L KSF
Sbjct: 237 GTLAKSF 243


>gi|206603142|gb|EDZ39622.1| Flagellar biosynthesis protein FliP [Leptospirillum sp. Group II
           '5-way CG']
          Length = 265

 Score =  199 bits (505), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 92/193 (47%), Positives = 134/193 (69%), Gaps = 3/193 (1%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +L+M+T F R ++V S LR  MG   VPPN V++ L+LF+TF+VM+P      E  I 
Sbjct: 75  PAILVMMTSFTRIVVVLSFLRQAMGTAQVPPNQVLVGLSLFLTFFVMAPVWKTMDETAIT 134

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P ++ +I    A+ R  +P   FM    R+KD++LF+ +AH        +  D I   +L
Sbjct: 135 PYLDKKIAPDVAVDRAMKPVRAFMFRQVRQKDIALFVRIAHLPR---TPSSPDDIPTYVL 191

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           IP+F++SEL  +FE+GFLI LPFLI+DM+V++++M+MGMMMLPPT +SLPFK++ FVL+D
Sbjct: 192 IPAFVVSELSTAFEMGFLIYLPFLILDMVVSSVLMSMGMMMLPPTVVSLPFKILLFVLVD 251

Query: 233 GWSLLVENLVKSF 245
           GWSL+V +LV+SF
Sbjct: 252 GWSLVVGSLVRSF 264


>gi|330880585|gb|EGH14734.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 226

 Score =  198 bits (504), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 92/220 (41%), Positives = 138/220 (62%), Gaps = 4/220 (1%)

Query: 26  VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
           + N        +  ++   I T LS  P  ++++T F R IIVFSILR  +G+   P N 
Sbjct: 8   LSNGADGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQ 67

Query: 86  VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145
           ++  +ALF+T ++M+P  DR  +  +QP +  +++   A+ +   P   FM   TR  DL
Sbjct: 68  ILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKLSAQDAVAKAQVPIKDFMLAQTRTSDL 127

Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
            LFM ++    + TDI   D     IL+P+F+ISEL+ +F+IGF+I +PFLIID++VA++
Sbjct: 128 ELFMRLS----KRTDIPTPDAAPLTILVPAFVISELKTAFQIGFMIFIPFLIIDLVVASV 183

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +MAMGMMML P  ISLPFK++ FVL+DGW+L+V  L  SF
Sbjct: 184 LMAMGMMMLSPLIISLPFKIMLFVLVDGWALIVGTLAGSF 223


>gi|258592488|emb|CBE68797.1| Flagellar transport protein FliP [NC10 bacterium 'Dutch sediment']
          Length = 243

 Score =  198 bits (504), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 93/240 (38%), Positives = 146/240 (60%), Gaps = 4/240 (1%)

Query: 6   FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65
           F A   +     F       ++   A  +  T  V+   + T+L++AP L+IM+T F R 
Sbjct: 7   FVAASPLAVGPSFVPIPQLPLVAGGAGSAEPTVAVQLVILLTLLAMAPALVIMLTSFSRI 66

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
           IIV S LRT MG   +PPN V+I L LF+TF+VM+P  ++     +QP ++ Q+ +  A+
Sbjct: 67  IIVLSFLRTAMGTQQMPPNQVLIGLTLFLTFFVMAPVGEQINREALQPYLSRQLAQEAAL 126

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
           +R  +P   FM   TRE+DL+L + +A              +   +L+P++ ISELR +F
Sbjct: 127 ERALQPLRTFMFKQTRERDLALMVHLARLERPKDRAA----VPTHVLVPAYAISELRTAF 182

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +IGF++ +PFL+IDM+V++++++MGM+ LPP  IS PFK++ FVL DGW L+V +LV  F
Sbjct: 183 QIGFVLFIPFLVIDMVVSSVLISMGMLFLPPPVISFPFKLLLFVLADGWHLVVRSLVIGF 242


>gi|103488403|ref|YP_617964.1| flagellar biosynthesis protein FliP [Sphingopyxis alaskensis
           RB2256]
 gi|98978480|gb|ABF54631.1| flagellar biosynthetic protein FliP [Sphingopyxis alaskensis
           RB2256]
          Length = 256

 Score =  198 bits (504), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 89/221 (40%), Positives = 136/221 (61%), Gaps = 4/221 (1%)

Query: 25  DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
            V  I  D    +  ++   + ++L++ P LL+M+T F R IIV SILR  +G+   PPN
Sbjct: 38  AVNEIGGDGRPLSLSLQILVLMSLLTVLPSLLLMMTSFTRIIIVLSILRHALGLQQTPPN 97

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
            V++ L+LF++ +VM P +     + I+P    QI    A+ R  +    FM   TR+ D
Sbjct: 98  QVLVGLSLFLSLFVMQPVISEVNRVAIEPYGQEQIDIGEAVSRSGDALHGFMMKQTRKTD 157

Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
           L +F  +A    R         + + IL+P+F+ SEL+ +F+IGFLI LPFL+ID+IVA+
Sbjct: 158 LMMFAKIA----RAPAYASPKDVPFSILLPAFVTSELKTAFQIGFLIFLPFLVIDLIVAS 213

Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            +M++GMMML PT IS+PFK++ FVL+DGW+L + +L  SF
Sbjct: 214 ALMSLGMMMLSPTIISMPFKLLLFVLVDGWALTMGSLAASF 254


>gi|258622510|ref|ZP_05717532.1| flagellar assembly protein [Vibrio mimicus VM573]
 gi|262173376|ref|ZP_06041053.1| flagellar biosynthesis protein FliP [Vibrio mimicus MB-451]
 gi|258585210|gb|EEW09937.1| flagellar assembly protein [Vibrio mimicus VM573]
 gi|261890734|gb|EEY36721.1| flagellar biosynthesis protein FliP [Vibrio mimicus MB-451]
          Length = 252

 Score =  198 bits (503), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 83/241 (34%), Positives = 131/241 (54%), Gaps = 4/241 (1%)

Query: 5   CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
                 +V P            ++  A     +  ++   + T LS  P  ++M T F R
Sbjct: 15  ILAFCLVVFPTYAADNGLTILSVSDGATEQEYSVKLQILLLMTALSFLPAFILMATSFTR 74

Query: 65  FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
            I+V +ILR  +G+   PPN V++ +AL +T  +M P      +   QP  N +IT   A
Sbjct: 75  IIVVLAILRQALGLQQTPPNRVLVGIALTLTLLIMRPVWTDIYKNAFQPYDNGEITLVQA 134

Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
                +P   FM   T +  L   + +A+           + I + I++P+F+ISEL+ +
Sbjct: 135 FSVAEKPVREFMLAQTHQNSLEQMLRIANEPID----QNVEDISFAIVLPAFVISELKTA 190

Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           F+IGF++ +PFLIID++VA+++MAMGMMML P  ISLPFK++ FVL+DGW++ V +L  S
Sbjct: 191 FQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKLVVFVLVDGWAMTVGSLSAS 250

Query: 245 F 245
           F
Sbjct: 251 F 251


>gi|330961233|gb|EGH61493.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 250

 Score =  198 bits (503), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 96/242 (39%), Positives = 145/242 (59%), Gaps = 7/242 (2%)

Query: 7   FALFLVTPELVFAKSSLHDVMNIPADLSIS---TWIVRTFGIFTILSIAPILLIMVTCFP 63
             L +V P ++ A       + +          +  ++   I T LS  P  ++++T F 
Sbjct: 10  LLLVMVAPSVLAADPLSIPAITLSNGADGQQEYSVSLQILLIMTALSFIPAFVMLMTSFT 69

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
           R IIVFSILR  +G+   P N ++  +ALF+T ++M+P  DR  +  +QP +  ++T   
Sbjct: 70  RIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKLTAQD 129

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
           A+ +   P   FM   TR  DL LFM ++    + TDI   D     IL+P+F+ISEL+ 
Sbjct: 130 AVAKAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTPDAAPLTILVPAFVISELKT 185

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
           +F+IGF+I +PFLIID++VA+++MAMGMMML P  ISLPFK++ FVL+DGW+L+V  L  
Sbjct: 186 AFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIVGTLAG 245

Query: 244 SF 245
           SF
Sbjct: 246 SF 247


>gi|332187877|ref|ZP_08389610.1| flagellar biosynthetic protein FliP [Sphingomonas sp. S17]
 gi|332012038|gb|EGI54110.1| flagellar biosynthetic protein FliP [Sphingomonas sp. S17]
          Length = 293

 Score =  198 bits (503), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 87/207 (42%), Positives = 136/207 (65%), Gaps = 4/207 (1%)

Query: 39  IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
            ++   I  +L+I P +++M+T F R +IV +ILR  +G+   PPN V+I LA+F++ ++
Sbjct: 89  SLQVLIIMGLLTILPGIILMMTSFTRIVIVLAILRQALGLQQTPPNQVLIGLAMFLSLFI 148

Query: 99  MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
           M+PT+ +     IQP    ++  T  I+    P   FM   TR KD+++F  MA S    
Sbjct: 149 MAPTISQMNANAIQPYAEGRLPGTEMIKAAGAPLHAFMAKQTRVKDVTMFAQMAKSG--- 205

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
                 + I Y +L+P+F+ SEL+ +F+IGFLI LPF++ID++VAT++MA+GMMML P+ 
Sbjct: 206 -PYASPNDIPYAVLLPAFVTSELKTAFQIGFLIFLPFIVIDLVVATVLMALGMMMLSPSI 264

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ISLPFK++ FVL+DGW+L + +L  SF
Sbjct: 265 ISLPFKLLLFVLVDGWALTMGSLANSF 291


>gi|229918642|ref|YP_002887288.1| flagellar biosynthetic protein FliP [Exiguobacterium sp. AT1b]
 gi|229470071|gb|ACQ71843.1| flagellar biosynthetic protein FliP [Exiguobacterium sp. AT1b]
          Length = 221

 Score =  198 bits (503), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 92/224 (41%), Positives = 147/224 (65%), Gaps = 5/224 (2%)

Query: 21  SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
           ++   ++N+    S ST  ++   + T+L++AP  LI++TCF R ++V S +R  +G   
Sbjct: 2   TTFEQLINLETPDSTST-SIKLLILLTLLTLAPSFLILMTCFTRVVVVLSFIRPALGTQQ 60

Query: 81  VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
            PPN +I+ LALF+T +VMSP L    E  ++P ++++I++  A    +     FM   T
Sbjct: 61  TPPNQLIVGLALFITLFVMSPVLSDLNENALKPYLDDKISQDEAFDEASGTMKEFMSKYT 120

Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
           R++DL LF+   +     T     D +    L+P++ ISEL+ +F+IGF+I LPFLIIDM
Sbjct: 121 RQEDLQLFLKYGNYEQPET----LDDVPLLALVPAYAISELKTAFQIGFMIFLPFLIIDM 176

Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           +VA+++M+MGMMMLPP  I+LPFK++ FVL+DGW L+VE+L++S
Sbjct: 177 VVASVLMSMGMMMLPPVMIALPFKLLLFVLVDGWHLIVESLLRS 220


>gi|121997286|ref|YP_001002073.1| flagellar biosynthesis protein FliP [Halorhodospira halophila SL1]
 gi|121588691|gb|ABM61271.1| flagellar biosynthetic protein FliP [Halorhodospira halophila SL1]
          Length = 246

 Score =  198 bits (503), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 90/215 (41%), Positives = 138/215 (64%), Gaps = 4/215 (1%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
            D    +  V+   + T+L++ P +++M+T F R I+V +ILR  +G  S P N V+I L
Sbjct: 34  EDGQTWSLSVQVLVLMTLLTLLPAMVLMMTAFTRIIVVLAILRQALGTASTPSNQVLIGL 93

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           ALF+T +VM P  D   E  +QP M  ++    A+++ +EP   FM   TRE D++LF+ 
Sbjct: 94  ALFLTLFVMMPVFDEINETALQPYMAEEMGAEEALEQASEPMREFMIRQTREDDIALFLR 153

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           +A       ++   D +   +LIP+FM SEL+ +F IGF++ LPFL+ID++VA+ +M+MG
Sbjct: 154 IAD----YGEVDSPDDVPMSVLIPAFMTSELKTAFIIGFVLYLPFLVIDLVVASTLMSMG 209

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+ML P  ISLPFK++ FVL+DGWSL++  L  SF
Sbjct: 210 MLMLSPMIISLPFKIMLFVLVDGWSLIMGTLASSF 244


>gi|163750540|ref|ZP_02157778.1| flagellar biosynthesis protein [Shewanella benthica KT99]
 gi|161329695|gb|EDQ00684.1| flagellar biosynthesis protein [Shewanella benthica KT99]
          Length = 248

 Score =  198 bits (503), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 89/247 (36%), Positives = 143/247 (57%), Gaps = 7/247 (2%)

Query: 2   IRYCFFALFLVTPELVFAKSSLHDVM---NIPADLSISTWIVRTFGIFTILSIAPILLIM 58
           + YCF    L+     FA   +   +         +  +  ++   + T +S  P ++IM
Sbjct: 4   LSYCFILSLLLISPGAFALDGVLPALIVTTTADGGTQYSVTMQILLLMTAMSFLPAMIIM 63

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R I+V SILR  +G+   P N V+I +++FMTF++M+P  D+     +QP +   
Sbjct: 64  LTSFTRIIVVLSILRQAIGLQQTPSNQVLIGISMFMTFFIMAPVFDKIYAEAVQPYIAET 123

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           +    A     EP   FM   TR  DL  F++++       +I   + +   +LIPSF+ 
Sbjct: 124 MNIEQAFNIGKEPIKTFMLAQTRVTDLDTFIEISG----YQNINSPEDVPMSVLIPSFIT 179

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P  +SLPFK++ FVL+DGWSL++
Sbjct: 180 SELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVM 239

Query: 239 ENLVKSF 245
             L  SF
Sbjct: 240 GTLANSF 246


>gi|148359333|ref|YP_001250540.1| flagellar biosynthetic protein FliP [Legionella pneumophila str.
           Corby]
 gi|148281106|gb|ABQ55194.1| flagellar biosynthetic protein FliP [Legionella pneumophila str.
           Corby]
          Length = 249

 Score =  198 bits (503), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 98/226 (43%), Positives = 144/226 (63%), Gaps = 7/226 (3%)

Query: 22  SLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79
           S   V   P      ++ +  +     T+L++ P LL+ +T F R IIV SILR  +GM 
Sbjct: 26  SFPVVTMQPGTNGSQSYSINLQILIFMTLLTVLPGLLMAMTSFTRIIIVLSILRQAIGMA 85

Query: 80  SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139
             P N ++I +ALFMT++VMSP  ++  E  IQP MN +I  + A+    +P   FM N 
Sbjct: 86  QTPTNQILIGIALFMTYFVMSPVFNKINETAIQPYMNERIDFSLALSNAQKPLRQFMLNQ 145

Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
           TR+ DLSLF   AH+  +       D I   +LIP+F+ SEL+ +F+IGF++ LPFLIID
Sbjct: 146 TRKNDLSLFEKFAHNVPK-----SLDEIPMSVLIPAFITSELKTAFQIGFILFLPFLIID 200

Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++V++++MAMGMMML P  ISLPFK++ FV++DGW+L++ +L  SF
Sbjct: 201 LVVSSVLMAMGMMMLSPLIISLPFKIMLFVMVDGWTLVLGSLASSF 246


>gi|312879603|ref|ZP_07739403.1| flagellar biosynthetic protein FliP [Aminomonas paucivorans DSM
           12260]
 gi|310782894|gb|EFQ23292.1| flagellar biosynthetic protein FliP [Aminomonas paucivorans DSM
           12260]
          Length = 258

 Score =  198 bits (503), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 89/207 (42%), Positives = 140/207 (67%), Gaps = 4/207 (1%)

Query: 39  IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
            ++   + T+LS+AP +++M+T F R ++V   +R  MG+  +PPN V+++LALF+TF+ 
Sbjct: 55  TLQIVALMTVLSMAPAIILMLTSFTRILVVLGFIRNAMGLQQMPPNQVLVTLALFLTFFT 114

Query: 99  MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
           M+P  D+    G+ P MN QI    A  R  +P   FM   TREK+LSL + +A      
Sbjct: 115 MTPVWDQIYGKGLVPYMNGQIPAAQAWDRSIKPLRAFMFRQTREKELSLMVRLAKMPQPK 174

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
                 D I  R+L+P+FM+SEL+ +F++G ++ +PF++IDMIV++++M+MGM+MLPP  
Sbjct: 175 NQ----DGIPTRVLMPAFMLSELKTAFQMGVVLFIPFIVIDMIVSSVLMSMGMIMLPPMM 230

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ISLPFKV+ FV+ DGW+L++ +LV SF
Sbjct: 231 ISLPFKVLLFVMADGWNLVIASLVTSF 257


>gi|327399031|ref|YP_004339900.1| flagellar biosynthetic protein FliP [Hippea maritima DSM 10411]
 gi|327181660|gb|AEA33841.1| flagellar biosynthetic protein FliP [Hippea maritima DSM 10411]
          Length = 249

 Score =  198 bits (503), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 96/227 (42%), Positives = 148/227 (65%), Gaps = 4/227 (1%)

Query: 20  KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79
             S++  M    + +     ++   + T+L++AP +LIM+T F R IIV +ILR  +G  
Sbjct: 26  APSINITMPTANNPTTIAESIKLLILLTVLALAPSILIMMTSFTRIIIVLAILRQALGTQ 85

Query: 80  SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139
            +PPN ++I +ALF+T ++MSP ++   +    PL  N+IT   A +   +P   FM   
Sbjct: 86  QMPPNQILIGIALFLTLFIMSPQINTIYKTAYLPLQKNEITLEGAYKNATKPLKTFMLKQ 145

Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
           TR+KDL+LF+ +A   +          +   I+IP+F+ISEL+ +FE+GF+I +PFLIID
Sbjct: 146 TRQKDLALFLRIAKKPNPK----NPQELSMDIVIPAFIISELKTAFEMGFIIYIPFLIID 201

Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           M+V++I+M+MGMMMLPP  ISLPFK++ FVL DGW+L+V +L KSF+
Sbjct: 202 MVVSSILMSMGMMMLPPIMISLPFKLLIFVLADGWNLVVMSLFKSFM 248


>gi|262273547|ref|ZP_06051361.1| flagellar biosynthesis protein FliP [Grimontia hollisae CIP 101886]
 gi|262222525|gb|EEY73836.1| flagellar biosynthesis protein FliP [Grimontia hollisae CIP 101886]
          Length = 243

 Score =  198 bits (503), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 90/241 (37%), Positives = 140/241 (58%), Gaps = 4/241 (1%)

Query: 5   CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
            F   FL+     F +      +  P      +  ++ F + T+LS  P +L+MVT F R
Sbjct: 6   LFIIFFLLFSLPAFGQDLPVLTVTGPDGTEEYSVKMQIFLLMTMLSFLPAMLLMVTSFTR 65

Query: 65  FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
            IIV  ILR  +G+   PPN V++ +AL +T + M P L    E  ++P  N  ++   A
Sbjct: 66  IIIVLGILRQAIGLQQSPPNTVLVGIALILTLFTMRPVLTDIHENAVKPYQNGTLSLQQA 125

Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
           +    +P   FM   TRE DL   + +A+           + I+  +L+P+F++SEL+ +
Sbjct: 126 VSVAEKPLKAFMLQQTRETDLDQILRIANEP----PHQAGEDIDLLLLMPAFVLSELKTA 181

Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           F+IGF++ +PFLIID++V++++MAMGMMML P  ISLPFK++ FV++DGWS+LV  L  S
Sbjct: 182 FQIGFMLFVPFLIIDIVVSSVLMAMGMMMLSPLIISLPFKLMIFVMVDGWSMLVGTLTAS 241

Query: 245 F 245
           F
Sbjct: 242 F 242


>gi|52842016|ref|YP_095815.1| flagellar biosynthesis protein FliP [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|296107380|ref|YP_003619080.1| flagellar biosynthetic protein FliP [Legionella pneumophila 2300/99
           Alcoy]
 gi|52629127|gb|AAU27868.1| flagellar biosynthetic protein FliP [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|295649281|gb|ADG25128.1| flagellar biosynthetic protein FliP [Legionella pneumophila 2300/99
           Alcoy]
 gi|307610489|emb|CBX00061.1| flagellar biosynthetic protein FliP [Legionella pneumophila 130b]
          Length = 249

 Score =  198 bits (503), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 98/226 (43%), Positives = 144/226 (63%), Gaps = 7/226 (3%)

Query: 22  SLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79
           S   V   P      ++ +  +     T+L++ P LL+ +T F R IIV SILR  +GM 
Sbjct: 26  SFPVVTMQPGTDGSQSYSINLQILIFMTLLTVLPGLLMAMTSFTRIIIVLSILRQAIGMA 85

Query: 80  SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139
             P N ++I +ALFMT++VMSP  ++  E  IQP MN +I  + A+    +P   FM N 
Sbjct: 86  QTPTNQILIGIALFMTYFVMSPVFNKINETAIQPYMNERIDFSLALSNAQKPLRQFMLNQ 145

Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
           TR+ DLSLF   AH+  +       D I   +LIP+F+ SEL+ +F+IGF++ LPFLIID
Sbjct: 146 TRKNDLSLFEKFAHNVPK-----SLDEIPMSVLIPAFITSELKTAFQIGFILFLPFLIID 200

Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++V++++MAMGMMML P  ISLPFK++ FV++DGW+L++ +L  SF
Sbjct: 201 LVVSSVLMAMGMMMLSPLIISLPFKIMLFVMVDGWTLVLGSLASSF 246


>gi|307293814|ref|ZP_07573658.1| flagellar biosynthetic protein FliP [Sphingobium chlorophenolicum
           L-1]
 gi|306879965|gb|EFN11182.1| flagellar biosynthetic protein FliP [Sphingobium chlorophenolicum
           L-1]
          Length = 273

 Score =  198 bits (503), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 90/218 (41%), Positives = 137/218 (62%), Gaps = 4/218 (1%)

Query: 28  NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87
            I  D    +  ++   + ++L++ P L++M+T F R IIV S+LR  +G+   PPN V+
Sbjct: 58  QISGDGRSLSLSLQILILMSLLTVLPSLILMMTSFTRIIIVLSLLRQALGLQQTPPNQVL 117

Query: 88  ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147
           + L+LF++ +VM P +D+       P    QI    A+ R A+    FM   TRE DL L
Sbjct: 118 VGLSLFLSLFVMRPAIDQINAQAFDPYGKGQIPIEEAVGRSAKVLHGFMTKQTRETDLKL 177

Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
           F ++A +    T       I + IL+P+F+ SEL+ +F+IGF+I LPFLIID++VA+ +M
Sbjct: 178 FQNLAEAPAFRTPA----DIPFSILLPAFVTSELKTAFQIGFMIFLPFLIIDLVVASTLM 233

Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           A+GMMML PT IS+PFK++ FVL+DGW+L + +L  SF
Sbjct: 234 ALGMMMLSPTIISMPFKLLLFVLVDGWALTMGSLAGSF 271


>gi|326796455|ref|YP_004314275.1| flagellar biosynthetic protein FliP [Marinomonas mediterranea
           MMB-1]
 gi|326547219|gb|ADZ92439.1| flagellar biosynthetic protein FliP [Marinomonas mediterranea
           MMB-1]
          Length = 251

 Score =  198 bits (503), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 92/221 (41%), Positives = 143/221 (64%), Gaps = 3/221 (1%)

Query: 25  DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
            V   P      T  ++   I T L++ P  LIM+T F R IIV SILR  +G+   P N
Sbjct: 32  SVTTNPDGSQEYTVSLQILFIMTALTLLPSALIMMTSFTRIIIVLSILRQALGLQQAPSN 91

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
            +I+ +ALF+T ++M PTLD+  E  +QP +++ +T   A++  + P   FM   TRE D
Sbjct: 92  QIILGMALFLTLFIMGPTLDQINESALQPYLSDNMTSLQAVKAASIPIREFMLGQTREDD 151

Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
           ++LF+ +A    +   I   + + + IL+P+F+ SEL+ +F+IGF++ +PFLI+DM+VA+
Sbjct: 152 IALFVKLAG---KEGQIPSLEDLPFTILMPAFVTSELKTAFQIGFMLFIPFLIVDMVVAS 208

Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++MAMGMMML P  ISLPFK++ FV++DGWS+++  L  SF
Sbjct: 209 VLMAMGMMMLSPIIISLPFKIMLFVMVDGWSMIMGTLAASF 249


>gi|288870652|ref|ZP_06114850.2| flagellar biosynthetic protein FliP [Clostridium hathewayi DSM
           13479]
 gi|288866388|gb|EFC98686.1| flagellar biosynthetic protein FliP [Clostridium hathewayi DSM
           13479]
          Length = 259

 Score =  197 bits (502), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 91/242 (37%), Positives = 140/242 (57%), Gaps = 3/242 (1%)

Query: 6   FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65
           F  +     ++ FA S +   +   +       ++    +F  L++ P LLIM+T F R 
Sbjct: 18  FIRVSAACGQIAFA-SDISLTLEGSSGSGKPMDMLDIMFLFLFLAVVPSLLIMMTSFTRI 76

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
           +IV S LR  +G    PPN V+I LALF+T ++MSP   +      +P     IT   A 
Sbjct: 77  VIVLSFLRNALGTQQSPPNQVMIGLALFLTLFIMSPVFAKVNTQAYEPYKAGAITREEAF 136

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND--HIEYRILIPSFMISELRR 183
            R  EP   FM   T +K L LF+ ++ +   +          +   +L+PSF++SEL +
Sbjct: 137 TRAQEPMKEFMLKQTEKKSLDLFLSISKTEVPDVSGGPEGYMKLGLTVLVPSFILSELNK 196

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
           +F +GFLI +PFLIID++V++ +M+MGM+MLPPT I+LPFK++ FVL+DGWSL+++ LV 
Sbjct: 197 AFTMGFLIYIPFLIIDLVVSSTLMSMGMVMLPPTMIALPFKIMMFVLVDGWSLVIKTLVT 256

Query: 244 SF 245
            F
Sbjct: 257 GF 258


>gi|169827136|ref|YP_001697294.1| flagellar biosynthesis protein FliP [Lysinibacillus sphaericus
           C3-41]
 gi|168991624|gb|ACA39164.1| Flagellar biosynthetic protein [Lysinibacillus sphaericus C3-41]
          Length = 221

 Score =  197 bits (502), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 88/194 (45%), Positives = 133/194 (68%), Gaps = 4/194 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +LI++T F R +IV S +RT +    +PPN VI+ LALF+TF++M+PT     +  +
Sbjct: 32  APSILILMTSFARIVIVLSFVRTALATQQMPPNQVIVGLALFLTFFIMAPTFQEVNKEAL 91

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           QPL + +I    A  R + PF  FM  +TR+KDL LF+    +          + I   +
Sbjct: 92  QPLFSEEIGLEEAYDRASLPFKEFMSKHTRQKDLDLFLSYNQAEKP----ASVEEIPLTM 147

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           L+P+F +SE++ +F+IGF+I +PFL+IDMIVA+ +M+MGMMMLPP  ISLPFK++ FVL+
Sbjct: 148 LVPAFALSEIKTAFQIGFMIFIPFLVIDMIVASTLMSMGMMMLPPVMISLPFKILLFVLV 207

Query: 232 DGWSLLVENLVKSF 245
           DGW L++++L++SF
Sbjct: 208 DGWYLVMKSLLQSF 221


>gi|284041537|ref|YP_003391877.1| flagellar biosynthetic protein FliP [Conexibacter woesei DSM 14684]
 gi|283945758|gb|ADB48502.1| flagellar biosynthetic protein FliP [Conexibacter woesei DSM 14684]
          Length = 213

 Score =  197 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 86/207 (41%), Positives = 134/207 (64%), Gaps = 3/207 (1%)

Query: 39  IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
            ++   +    ++ P  L  +T F R +IV   +RT +G  + PPN V++ +ALF+T +V
Sbjct: 9   AIQVLLLIGAFTLIPAGLFCLTGFTRILIVLGFIRTAIGTPTAPPNQVLVGIALFLTLFV 68

Query: 99  MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
           M+PT  +  E    PL   +I    A++R  EP   FM   TR KDL+LF+ ++ +  + 
Sbjct: 69  MAPTFTQIKETAWDPLEAGRINTAQAVRRAEEPLRQFMFEQTRTKDLALFVRLSRTREQP 128

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
                   I   +LIP+F++SEL+ +F+IGF+I LPFL+ID+IVA+ +M+MGM+MLPP  
Sbjct: 129 RTRA---DIPTTVLIPAFIVSELKTAFQIGFMIFLPFLVIDLIVASTLMSMGMIMLPPVF 185

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ISLPFK++ FVL+DGW+L+ ++LV+SF
Sbjct: 186 ISLPFKILLFVLVDGWALITDSLVRSF 212


>gi|225850263|ref|YP_002730497.1| flagellar biosynthetic protein FliP [Persephonella marina EX-H1]
 gi|225646564|gb|ACO04750.1| flagellar biosynthetic protein FliP [Persephonella marina EX-H1]
          Length = 222

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 101/207 (48%), Positives = 140/207 (67%), Gaps = 5/207 (2%)

Query: 39  IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
            ++   + TILS+AP +LI VT F R +IV S+LR  +G+   PPN VII+ +LF+TF+V
Sbjct: 20  TLKILFLITILSLAPSILITVTAFVRIVIVLSLLRHALGIPQSPPNQVIIAFSLFLTFFV 79

Query: 99  MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
           M P  D      IQP +  +I +  AI+R  EP   FM  NTR++DL LF+D+A    + 
Sbjct: 80  MKPVFDDINGNAIQPYLKKEIGDMEAIERAKEPVKKFMLKNTRKEDLKLFLDIAGEKPK- 138

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
                 D +    LIP+FMISE++ +FEI F+I LPFLIIDM+VA+I+M+MGMMM+PP  
Sbjct: 139 ----SPDEVSMVSLIPAFMISEIKTAFEIVFIIFLPFLIIDMLVASILMSMGMMMIPPML 194

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ISLPFK+I FVL DG+ LL + L++S+
Sbjct: 195 ISLPFKLILFVLADGFELLTKALIQSY 221


>gi|254506844|ref|ZP_05118983.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus 16]
 gi|219550129|gb|EED27115.1| flagellar biosynthetic protein FliP [Vibrio parahaemolyticus 16]
          Length = 244

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 89/206 (43%), Positives = 138/206 (66%), Gaps = 5/206 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   + T+L   P ++I++T F R ++V SILR  MG+   P N VII +A+F+TF++M
Sbjct: 42  LQILALMTMLGFLPAMVILMTSFTRIVVVMSILRQAMGLQQTPSNQVIIGIAIFLTFFIM 101

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP L++  ++ +QP +N QIT   A      P   FM   TR KDL  F++++ S+    
Sbjct: 102 SPVLNKINDVAVQPYINEQITAREAFDLAQAPMKDFMLKQTRVKDLETFVNISGST---- 157

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
             T  + +   +LIP+F+ SEL+ +F+IGF++ LPFLIID++VA+++MAMGMMML P  +
Sbjct: 158 -ATAPEDVSMAVLIPAFITSELKTAFQIGFMLFLPFLIIDLVVASVLMAMGMMMLSPMIV 216

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 217 SLPFKLMLFVLVDGWNLILSTLAGSF 242


>gi|119899016|ref|YP_934229.1| flagellar biosynthesis protein FliP [Azoarcus sp. BH72]
 gi|119671429|emb|CAL95342.1| flagellar biosynthetic protein FliP [Azoarcus sp. BH72]
          Length = 258

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 93/227 (40%), Positives = 150/227 (66%), Gaps = 6/227 (2%)

Query: 21  SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
             L  + + P     + +   V+T  + T+LS  P L++M+T F R IIVFS+LR  +G 
Sbjct: 34  QGLPALNSTPGPGGSTNYSLPVQTLALLTLLSFIPALVLMMTSFTRIIIVFSLLRQAIGT 93

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
            + PPN V++ LALF+TF++M+P  D+      QP+   +I+   A++R   P   FM  
Sbjct: 94  QTSPPNQVLLGLALFLTFFIMAPVADKVYLEAYQPMSEGRISFEQALERATVPVKAFMLK 153

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
             RE DLSLF  +A    ++  + K + +  R+++P+F+ SEL+ +F+IGF++ +PF+II
Sbjct: 154 QVREPDLSLFTGLA----KHPPVEKAEDLPMRVVVPAFVTSELKTAFQIGFIVFIPFIII 209

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           DM+VA+++M+MGMMM+ P  +SLPFK++ FVL+DGW+LL+ +LV+SF
Sbjct: 210 DMVVASVLMSMGMMMMSPVIVSLPFKIMLFVLVDGWTLLIGSLVQSF 256


>gi|163800128|ref|ZP_02194029.1| putative flagellar assembly protein [Vibrio sp. AND4]
 gi|159175571|gb|EDP60365.1| putative flagellar assembly protein [Vibrio sp. AND4]
          Length = 255

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 79/232 (34%), Positives = 128/232 (55%), Gaps = 4/232 (1%)

Query: 14  PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73
           P +          ++        +  ++   + T LS  P  ++M T F R I+V +ILR
Sbjct: 27  PTMAADNGLTILSVSDGDTQQEYSVKLQILLLMTALSFLPAFILMATSFTRIIVVLAILR 86

Query: 74  TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133
             +G+   PPN V++ +AL +T  +M P      +   +P  N +IT   A     +P  
Sbjct: 87  QALGLQQSPPNRVLVGIALALTLLIMRPVWTDIHDNAFKPYDNGEITLMQAFSVAEKPVR 146

Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
            FM   T +  L   + +A+           + I + +++P+F+ISEL+ +F+IGF++ +
Sbjct: 147 NFMLAQTHQSSLEQMLRIANEPID----QNIEDISFAVVLPAFVISELKTAFQIGFMLFI 202

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           PFLIID++VA+++MAMGMMML P  ISLPFK++ FVL+DGW++ V  L  SF
Sbjct: 203 PFLIIDLVVASVLMAMGMMMLSPLIISLPFKLVIFVLVDGWAMTVGTLSASF 254


>gi|149377875|ref|ZP_01895604.1| flagellar biosynthesis protein P [Marinobacter algicola DG893]
 gi|149357817|gb|EDM46310.1| flagellar biosynthesis protein P [Marinobacter algicola DG893]
          Length = 254

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 93/248 (37%), Positives = 154/248 (62%), Gaps = 14/248 (5%)

Query: 7   FALFLVTPELVFAKSSLHDVMNIPA---------DLSISTWIVRTFGIFTILSIAPILLI 57
            A   +     +A ++L D+  IPA          +   +  ++   + T L+  P +L+
Sbjct: 10  LATLALLIFTAWAPAALADIPGIPAFTVTPGEEEGVQEYSVSLQILALMTALTFLPAMLM 69

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           M+T F R I+VF+ILR  +G+ S P N +++ L LF+T ++M P L+   E+ +QP M  
Sbjct: 70  MMTSFTRIIVVFAILRQALGLQSTPSNQILLGLTLFLTIFIMKPVLEEVNEVALQPYMQE 129

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
           +++   A+++ ++PF  FM   TRE DL LFM +A   +        + + + +L+P+F+
Sbjct: 130 ELSSLEAVEQASQPFRKFMLAQTRESDLGLFMRIADEQY-----DTAEDVSFWVLLPAFV 184

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
            SEL+ +F+IGF++ +PFLIIDM+VA+++MAMGMMML P  ISLPFK++ FVL+DGW+L+
Sbjct: 185 TSELKTAFQIGFILFIPFLIIDMVVASVLMAMGMMMLSPIIISLPFKIMLFVLVDGWALI 244

Query: 238 VENLVKSF 245
           +  L  S+
Sbjct: 245 MGTLAASY 252


>gi|330447937|ref|ZP_08311585.1| flagellar biosynthetic protein FliP [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328492128|dbj|GAA06082.1| flagellar biosynthetic protein FliP [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 254

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 82/245 (33%), Positives = 127/245 (51%), Gaps = 4/245 (1%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           +           + ++          +         +  ++   + T LS  P  L+M T
Sbjct: 13  LTLVVIIGCLFFSSQVEANSGLNFLTVTDEQGEQEYSVKLQILLLMTALSFIPAFLLMAT 72

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R IIV SILR  +G+   PPN +++ +AL +T  +M P      +    P  N  IT
Sbjct: 73  SFTRIIIVLSILRQALGLQQSPPNRILVGIALSLTILIMRPVWSDVYDNAFVPYDNGDIT 132

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A     +P   FM   T +  L   M +A+           + I + I++P+F++SE
Sbjct: 133 LLQAFDTAEKPVRDFMLKQTHQSALEQMMRIANEPLD----QDVEDISFAIVLPAFVVSE 188

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +F+IGF++ +PFLIID++VA+++MAMGMMML P  ISLPFK+I FVL DGW++ V +
Sbjct: 189 LKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKLIVFVLADGWTMTVGS 248

Query: 241 LVKSF 245
           L  SF
Sbjct: 249 LSASF 253


>gi|302874603|ref|YP_003843236.1| flagellar biosynthetic protein FliP [Clostridium cellulovorans
           743B]
 gi|307690786|ref|ZP_07633232.1| flagellar biosynthesis protein FliP [Clostridium cellulovorans
           743B]
 gi|302577460|gb|ADL51472.1| flagellar biosynthetic protein FliP [Clostridium cellulovorans
           743B]
          Length = 257

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 85/193 (44%), Positives = 130/193 (67%), Gaps = 4/193 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +L+ +T F R  IV S L+  +G    PP+ V+I L+LF+TF+VMSPT+ +     +Q
Sbjct: 68  PSILLTMTSFTRISIVLSFLKNAIGTQQTPPSQVLIGLSLFLTFFVMSPTISKVNTNALQ 127

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P +NNQI++  AI         FM   TR+KDL LF D+        + TK + ++  ++
Sbjct: 128 PYLNNQISQQQAIDIGTTEMKTFMLKQTRKKDLKLFRDIRGV----AEETKPEDLKMEVV 183

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           IPSF+ISEL+ +F IGF I +PFLIID +VA+++M+MGM M+ P  +S+PFK++ F+++D
Sbjct: 184 IPSFIISELKTAFTIGFFIYIPFLIIDFVVASVLMSMGMFMISPMMVSIPFKILLFIMVD 243

Query: 233 GWSLLVENLVKSF 245
           GW+L+V++LV SF
Sbjct: 244 GWNLIVKSLVLSF 256


>gi|15615005|ref|NP_243308.1| flagellar biosynthesis protein FliP [Bacillus halodurans C-125]
 gi|10175062|dbj|BAB06161.1| flagellar protein required for flagellar formation [Bacillus
           halodurans C-125]
          Length = 233

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 99/217 (45%), Positives = 146/217 (67%), Gaps = 4/217 (1%)

Query: 29  IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
           +  D +     V+   + T+LS+AP +LI++TCF R +IV S +RTG+   ++PPN VII
Sbjct: 20  MTDDPAGVATTVQLLLLLTVLSLAPSILILMTCFTRVVIVLSFVRTGLATQTMPPNQVII 79

Query: 89  SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
            +ALF+TF++M+P      +  + P ++ +I +  A+ R A P   FM  +TREKDL+LF
Sbjct: 80  GIALFITFFIMAPVFAEVNDQALTPFLDGEIDQQEAMDRAAIPMKEFMAKHTREKDLALF 139

Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
           M  A            + I    L+P+F ISEL+ +F+IGFLI +PFL+IDMIVA+++M+
Sbjct: 140 MGYAGHDRPE----SIEDIPLTALVPAFAISELKTAFQIGFLIFIPFLVIDMIVASVLMS 195

Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MGMMMLPP  ISLPFK++ FVL+DGW L+V++L+ SF
Sbjct: 196 MGMMMLPPIMISLPFKILLFVLVDGWYLVVQSLLLSF 232


>gi|299534771|ref|ZP_07048101.1| flagellar biosynthesis protein FliP [Lysinibacillus fusiformis ZC1]
 gi|298729859|gb|EFI70404.1| flagellar biosynthesis protein FliP [Lysinibacillus fusiformis ZC1]
          Length = 221

 Score =  197 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 89/194 (45%), Positives = 132/194 (68%), Gaps = 4/194 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +LI++T F R +IV S +RT +    +PPN VII LALF+TF++M+PT     +  +
Sbjct: 32  APSILILMTSFARIVIVLSFVRTALATQQMPPNQVIIGLALFLTFFIMAPTFQEVNKEAL 91

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           QPL   +I    A  R + PF  FM  +TR+KDL LF+    +          + I   +
Sbjct: 92  QPLFAEEIGIEEAYDRASVPFKEFMSKHTRQKDLDLFLTYNQADKP----ASVEEIPLTM 147

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           L+P+F +SE++ +F+IGF+I +PFL+IDMIVA+ +M+MGMMMLPP  ISLPFK++ FVL+
Sbjct: 148 LVPAFALSEIKTAFQIGFMIFIPFLVIDMIVASTLMSMGMMMLPPVMISLPFKILLFVLV 207

Query: 232 DGWSLLVENLVKSF 245
           DGW L++++L++SF
Sbjct: 208 DGWYLVMKSLLQSF 221


>gi|126653733|ref|ZP_01725651.1| flagellar biosynthesis protein P [Bacillus sp. B14905]
 gi|126589697|gb|EAZ83833.1| flagellar biosynthesis protein P [Bacillus sp. B14905]
          Length = 221

 Score =  197 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 88/194 (45%), Positives = 133/194 (68%), Gaps = 4/194 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +LI++T F R +IV S +RT +    +PPN VI+ LALF+TF++M+PT     +  +
Sbjct: 32  APSILILMTSFARIVIVLSFVRTALATQQMPPNQVIVGLALFLTFFIMAPTFQEVNKEAL 91

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           QPL + +I    A  R + PF  FM  +TR+KDL LF+    +          + I   +
Sbjct: 92  QPLFSEEIGLDEAYDRASLPFKEFMSKHTRQKDLDLFLSYNQAEKP----ASVEEIPLTM 147

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           L+P+F +SE++ +F+IGF+I +PFL+IDMIVA+ +M+MGMMMLPP  ISLPFK++ FVL+
Sbjct: 148 LVPAFALSEIKTAFQIGFMIFIPFLVIDMIVASTLMSMGMMMLPPVMISLPFKILLFVLV 207

Query: 232 DGWSLLVENLVKSF 245
           DGW L++++L++SF
Sbjct: 208 DGWYLVMKSLLQSF 221


>gi|68343342|gb|AAY90948.1| flagellar biosynthetic protein FliP [Pseudomonas fluorescens Pf-5]
          Length = 241

 Score =  197 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 90/220 (40%), Positives = 137/220 (62%), Gaps = 4/220 (1%)

Query: 26  VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
           +    +     +  ++   I T LS  P  ++++T F R IIVFSILR  +G+   P N 
Sbjct: 23  LGTNASGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQ 82

Query: 86  VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145
           ++  +ALF+T ++M+P  DR  +  +QP +  ++T   A+ +   P   FM   TR  DL
Sbjct: 83  ILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKLTAQDAVAKAQVPIKDFMLAQTRSSDL 142

Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
            LFM ++    + TDI   D     IL+P+F+ SEL+ +F+IGF+I +PFLIID++VA++
Sbjct: 143 ELFMRLS----KRTDIASPDQAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASV 198

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +MAMGMMML P  ISLPFK++ FVL+DGW+L++  L  SF
Sbjct: 199 LMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLAGSF 238


>gi|297584051|ref|YP_003699831.1| flagellar biosynthetic protein FliP [Bacillus selenitireducens
           MLS10]
 gi|297142508|gb|ADH99265.1| flagellar biosynthetic protein FliP [Bacillus selenitireducens
           MLS10]
          Length = 226

 Score =  197 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 92/194 (47%), Positives = 131/194 (67%), Gaps = 4/194 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +LI++T F R +IV S +R G+    +PPN VII LALF+TF+VM+PT     E  +
Sbjct: 37  APAILILMTSFTRIVIVLSFVRNGLATQQMPPNQVIIGLALFLTFFVMAPTFSEVNEAAL 96

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           QPL +  I++  A      P   FM  +TRE+DL+LFM  A            + I    
Sbjct: 97  QPLFDGDISQEEAFDEATIPMKEFMAQHTRERDLALFMGYAGQERPE----SLEDIPLTS 152

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           L+P+F+ISEL+ +F+IGF+I +PFL+IDM+VA+++M+MGMMMLPP  I+LPFKV+ FVL+
Sbjct: 153 LVPAFVISELKTAFQIGFMIFVPFLVIDMVVASVLMSMGMMMLPPVMIALPFKVLLFVLV 212

Query: 232 DGWSLLVENLVKSF 245
           DGW L+V +L+ +F
Sbjct: 213 DGWHLVVRSLLYTF 226


>gi|77918770|ref|YP_356585.1| flagellar biosynthesis protein FliP [Pelobacter carbinolicus DSM
           2380]
 gi|77544853|gb|ABA88415.1| flagellar biosynthetic protein FliP [Pelobacter carbinolicus DSM
           2380]
          Length = 248

 Score =  197 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 102/243 (41%), Positives = 154/243 (63%), Gaps = 6/243 (2%)

Query: 5   CFFALFLVTPELVFAKSSLHDVMNIPADLSIS--TWIVRTFGIFTILSIAPILLIMVTCF 62
               L +V P  V A+      + +      +  + +++   I T+LS+AP +L+M T F
Sbjct: 7   IVLMLLIVLPASVMAEPVPAITIGLGQAGGQAPPSTLMQILLIMTVLSVAPAILLMTTAF 66

Query: 63  PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122
            R  +V S LR  MG   +PPN VII L+LF+TF+VMSP  ++  +  +QP +  +I + 
Sbjct: 67  IRLAVVLSFLRQAMGTQQMPPNQVIIGLSLFLTFFVMSPVFNQINDQAVQPYLTQKIDQK 126

Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182
            A+    EP   FM + T E +LSL M+++       D    + +    LIP+FM+SEL+
Sbjct: 127 QALTLAVEPMRQFMFSQTTESELSLLMEISGHP----DPAGKEDVPTLTLIPAFMLSELK 182

Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
           R+F+IGF+I +PFL+IDMIVA+++M+MGMMMLPP  ISLPFK++ FVL+DGW+L+V +LV
Sbjct: 183 RAFQIGFMIYIPFLVIDMIVASVLMSMGMMMLPPIIISLPFKLLLFVLVDGWTLIVGSLV 242

Query: 243 KSF 245
           +SF
Sbjct: 243 QSF 245


>gi|149928152|ref|ZP_01916398.1| flagellar biosynthesis protein P [Limnobacter sp. MED105]
 gi|149823137|gb|EDM82375.1| flagellar biosynthesis protein P [Limnobacter sp. MED105]
          Length = 256

 Score =  197 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 102/231 (44%), Positives = 147/231 (63%), Gaps = 6/231 (2%)

Query: 17  VFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74
             A+  L  V   P     + +   ++T   FT LS  P LL+M+T F R +IV S+LR 
Sbjct: 28  AQAQQVLPGVTATPGANGTTNYSVPIQTLLFFTFLSFLPALLLMMTGFTRIVIVMSLLRM 87

Query: 75  GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134
            +G  + PPN VII L++F+TF++M+P  DR  E    P  NN+I      +R + P   
Sbjct: 88  ALGTQNSPPNQVIIGLSMFLTFFIMAPVFDRVYENAYLPFSNNEIEFQEMTERASVPMKD 147

Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
           FM   TRE DL+LFM +     +  ++   + +  R+LIP+F+ SEL+ +F+IGF+I LP
Sbjct: 148 FMLKQTREPDLALFMRL----GKVENVENPEDVPLRVLIPAFVTSELKTAFQIGFMIFLP 203

Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           FL+ID+IVA+++M+MGMMML P  ISLPFK++ FVL+DGW+LLV +LV SF
Sbjct: 204 FLVIDLIVASVLMSMGMMMLSPMLISLPFKIMLFVLVDGWTLLVGSLVASF 254


>gi|90577375|ref|ZP_01233186.1| putative flagellar assembly protein [Vibrio angustum S14]
 gi|90440461|gb|EAS65641.1| putative flagellar assembly protein [Vibrio angustum S14]
          Length = 243

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 89/246 (36%), Positives = 133/246 (54%), Gaps = 5/246 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI-VRTFGIFTILSIAPILLIMV 59
           M+     AL ++      A S L+ +            + ++   + T LS  P  L+M 
Sbjct: 1   MLTLLLIALGVLFSSAAEANSGLNFLTVTDDQGEQEYSVKLQILLLMTALSFIPAFLLMA 60

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R IIV SILR  +G+   PPN +++ +AL +T  +M P      +    P  N  I
Sbjct: 61  TSFTRIIIVLSILRQALGLQQSPPNRILVGIALSLTILIMRPVWTDVYDNAFVPYDNGDI 120

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           T   A     +P   FM   T +  L   M +A+           + I + I++P+F+IS
Sbjct: 121 TLLQAFDTAEKPVRDFMLKQTHQSALEQMMRIANEPLD----QDVEDISFAIVLPAFVIS 176

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+ +F+IGF++ +PFLIID++VA+++MAMGMMML P  ISLPFK+I FVL DGW++ V 
Sbjct: 177 ELKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKLIVFVLADGWTMTVG 236

Query: 240 NLVKSF 245
           +L  SF
Sbjct: 237 SLSASF 242


>gi|161501973|ref|YP_258777.2| flagellar biosynthesis protein FliP [Pseudomonas fluorescens Pf-5]
          Length = 249

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 90/220 (40%), Positives = 137/220 (62%), Gaps = 4/220 (1%)

Query: 26  VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
           +    +     +  ++   I T LS  P  ++++T F R IIVFSILR  +G+   P N 
Sbjct: 31  LGTNASGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQ 90

Query: 86  VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145
           ++  +ALF+T ++M+P  DR  +  +QP +  ++T   A+ +   P   FM   TR  DL
Sbjct: 91  ILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKLTAQDAVAKAQVPIKDFMLAQTRSSDL 150

Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
            LFM ++    + TDI   D     IL+P+F+ SEL+ +F+IGF+I +PFLIID++VA++
Sbjct: 151 ELFMRLS----KRTDIASPDQAPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVASV 206

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +MAMGMMML P  ISLPFK++ FVL+DGW+L++  L  SF
Sbjct: 207 LMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLAGSF 246


>gi|306841043|ref|ZP_07473767.1| flagellar biosynthetic protein FliP [Brucella sp. BO2]
 gi|306288932|gb|EFM60232.1| flagellar biosynthetic protein FliP [Brucella sp. BO2]
          Length = 204

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 121/206 (58%), Positives = 163/206 (79%), Gaps = 3/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++ FG+ T+LSIAP LLIMVT F RF I FS+LR+G+G+ + P ++V+ISLALFMTFYVM
Sbjct: 1   MQLFGLLTVLSIAPGLLIMVTSFTRFAIAFSLLRSGLGLQTAPASMVMISLALFMTFYVM 60

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +P  DR+   G+QPLM N+IT+  A   +++PF  FM    R+KDL LF D+A  S R +
Sbjct: 61  APAFDRAWNNGVQPLMRNEITQEAAFGEISQPFREFMMAQVRDKDLRLFEDLADPSFRTS 120

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           D      +++R+L+P+FMISELRR FEIGFLI+LPFL+ID++VAT+ M+MGMMMLPPT I
Sbjct: 121 DDGI---VDFRVLVPAFMISELRRGFEIGFLIVLPFLVIDLVVATLTMSMGMMMLPPTVI 177

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++FFVLIDGW++LV +L++SF
Sbjct: 178 SLPFKILFFVLIDGWNILVGSLIRSF 203


>gi|172057873|ref|YP_001814333.1| flagellar biosynthetic protein FliP [Exiguobacterium sibiricum
           255-15]
 gi|171990394|gb|ACB61316.1| flagellar biosynthetic protein FliP [Exiguobacterium sibiricum
           255-15]
          Length = 222

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 88/211 (41%), Positives = 137/211 (64%), Gaps = 4/211 (1%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           S +   V+   + T+LS+AP LLI++TCF R I+V S +R+ +G    PPN +++ LALF
Sbjct: 14  SGTATSVKLLVLLTLLSLAPSLLILMTCFTRVIVVLSFVRSALGTQQTPPNQLLVGLALF 73

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           +T +VM+P L       +QP M+ +I++  A  +       FM   TR  DL LF+   +
Sbjct: 74  ITLFVMAPVLTELNTTALQPYMDEKISQDEAFDQAGGTMKRFMSQYTRSNDLELFLKYGN 133

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
                    K + I    L+P++ ISEL+ +F+IGF+I +PFL+IDM+V++++M+MGMMM
Sbjct: 134 YEKPE----KVEDIPLVALVPAYAISELKTAFQIGFMIFIPFLVIDMVVSSVLMSMGMMM 189

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           LPP  I+LPFK++ F+L+DGW L+VE+L+ S
Sbjct: 190 LPPVMIALPFKLLLFILVDGWHLIVESLLVS 220


>gi|255021382|ref|ZP_05293430.1| Flagellar biosynthesis protein fliP [Acidithiobacillus caldus ATCC
           51756]
 gi|254969245|gb|EET26759.1| Flagellar biosynthesis protein fliP [Acidithiobacillus caldus ATCC
           51756]
          Length = 223

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 85/217 (39%), Positives = 138/217 (63%), Gaps = 4/217 (1%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P   +  +  ++T    T+L   P LL+M+T F R IIV S+L+  +G   +PP+ V++ 
Sbjct: 10  PGGGTEYSLSIQTLLFMTVLVFLPALLLMMTAFTRIIIVLSLLKQALGSTQMPPSQVMVG 69

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           LALF+TF+VM+P   +     +QPL +N+I    A+ +   P   FM + TR  DL+LF+
Sbjct: 70  LALFLTFFVMAPVFQQINTEALQPLNDNKIDLVQAMAKAEGPLRNFMLSQTRPDDLALFV 129

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
            ++        + K       +L+P+F+ SEL+  F+IGFLI +PF+IID++VA ++M++
Sbjct: 130 KLSGHK----ALEKPSDTPLSLLVPAFITSELKTGFQIGFLIFIPFVIIDLVVAAVLMSL 185

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           GMMML P ++S P K++ FVL+DGW L++ +LV+SF+
Sbjct: 186 GMMMLSPVTVSFPLKLMLFVLVDGWDLVIGSLVQSFV 222


>gi|237799248|ref|ZP_04587709.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022103|gb|EGI02160.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 250

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 95/245 (38%), Positives = 145/245 (59%), Gaps = 7/245 (2%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSIS---TWIVRTFGIFTILSIAPILLIMVT 60
                L +V P ++ A       + +          +  ++   I T LS  P  ++++T
Sbjct: 7   LILLMLVMVAPAVLAADPLSIPAITLSNSTDGQQEYSVSLQILLIMTALSFIPAFVMLMT 66

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R IIVFSILR  +G+   P N ++  +ALF+T ++M+P  DR  +  +QP +  +++
Sbjct: 67  SFTRIIIVFSILRQALGLQQTPSNQILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKLS 126

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A+ +   P   FM   TR  DL LFM ++    + TDI   D     IL+P+F+ISE
Sbjct: 127 AQDAVAKAQVPIKDFMLAQTRTSDLELFMRLS----KRTDIPTPDAAPLTILVPAFVISE 182

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +F+IGF+I +PFLIID++VA+++MAMGMMML P  ISLPFK++ FVL+DGW+L+V  
Sbjct: 183 LKTAFQIGFMIFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIVGT 242

Query: 241 LVKSF 245
           L  SF
Sbjct: 243 LAGSF 247


>gi|288573013|ref|ZP_06391370.1| flagellar biosynthetic protein FliP [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288568754|gb|EFC90311.1| flagellar biosynthetic protein FliP [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 256

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 88/218 (40%), Positives = 147/218 (67%), Gaps = 7/218 (3%)

Query: 28  NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87
             P D+S S   ++   + T+LS+AP +L+MVT F R ++V   +R  +G+   PPN VI
Sbjct: 45  TSPQDVSTS---LQIVALLTVLSVAPAILLMVTSFTRVLVVLGFVRNALGLQQTPPNQVI 101

Query: 88  ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147
           ++LALF++ ++M+PT D     G+ P M  +I    A++ V  P   FM + TRE++LSL
Sbjct: 102 VTLALFLSLFIMAPTWDVMYSQGLSPYMEGRIGSMEALENVTTPLRRFMLSQTREEELSL 161

Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
            + M+         +  D I  ++L+P++M+SEL+ +F++G +I +PF+++DMI+++++M
Sbjct: 162 MVSMSGLERP----SSADDIPNKVLLPAYMLSELKSAFQMGIVIYVPFIVVDMIISSVLM 217

Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +MGM+MLPP  ISLPFKV+ FV+ DGW+L+V +L++SF
Sbjct: 218 SMGMIMLPPMMISLPFKVLLFVMADGWNLVVVSLIRSF 255


>gi|315179664|gb|ADT86578.1| flagellar biosynthesis protein FliP [Vibrio furnissii NCTC 11218]
          Length = 252

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 81/242 (33%), Positives = 130/242 (53%), Gaps = 4/242 (1%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
                +    P L          ++  +     +  ++   + T LS  P  ++M T F 
Sbjct: 13  LALVLMLCAWPTLAADNGLTLFTVSDGSTQEEYSVKLQILLLMTALSFLPAFILMATSFT 72

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
           R I+V +ILR  +G+   PPN V++ +AL ++  +M P      E   +P    QIT   
Sbjct: 73  RIIVVLAILRQALGLQQSPPNRVLVGIALALSLLIMRPVWSEVYEHAFKPYDQGQITLMQ 132

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
           A     +P   FM   T++  L   + +A+           D I + +++P+F+ISEL+ 
Sbjct: 133 AFSVAEKPVRNFMLAQTQQSSLEQMLRIANEPLD----QNVDDISFAVVLPAFVISELKT 188

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
           +F+IGF++ +PFLIID++VA+++MAMGMMML P  ISLPFK++ FVL+DGW++ V  L  
Sbjct: 189 AFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKLVVFVLVDGWAMTVGTLSA 248

Query: 244 SF 245
           SF
Sbjct: 249 SF 250


>gi|306820131|ref|ZP_07453779.1| flagellar biosynthetic protein FliP [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551909|gb|EFM39852.1| flagellar biosynthetic protein FliP [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 264

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 86/231 (37%), Positives = 147/231 (63%)

Query: 15  ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74
               A  ++   +N   + +  +  +     FT+LS+ P +LIM+TCF R +++ S L+ 
Sbjct: 33  ASATAIPNVSLNINTGGNSTDMSDSIELLLFFTLLSVLPSILIMMTCFTRIVVILSFLKQ 92

Query: 75  GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134
            +G     P+ V++ LALF+TF++M+P   ++ + G++P  + QI +  A++ V +P   
Sbjct: 93  AIGAQQTIPSQVMVGLALFLTFFIMAPVGKQAYDGGLKPYFDKQIKQEQAVENVMKPVRE 152

Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
           FM   TR+ D+ LF++++       D    ++I   +LIP+F ISEL+  F+IGFL+ +P
Sbjct: 153 FMFKQTRQSDIKLFLELSKDEQLKKDNVTLENIPNSVLIPAFCISELKTGFQIGFLLFIP 212

Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           F+IIDM+V++ +M+MGMMMLPP  IS+PFK++ FVL+DGW L++ ++V  F
Sbjct: 213 FIIIDMVVSSTLMSMGMMMLPPMMISMPFKLLLFVLVDGWDLVIRSIVMGF 263


>gi|119469996|ref|ZP_01612801.1| flagellar biosynthesis protein P [Alteromonadales bacterium TW-7]
 gi|119446706|gb|EAW27979.1| flagellar biosynthesis protein P [Alteromonadales bacterium TW-7]
          Length = 246

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 89/246 (36%), Positives = 144/246 (58%), Gaps = 5/246 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSI-STWIVRTFGIFTILSIAPILLIMV 59
           M ++      +V    V A+      +   AD +   +  ++   I T LS  P  +IM+
Sbjct: 1   MTKWLLIIFAIVFVPSVSAEGIDALTITTNADGTQDYSVTLQVLAIMTALSFIPAAIIMM 60

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R I+V +ILR  +G+   P N V++ ++LF++ ++M+P   +  ++ I+P +N Q+
Sbjct: 61  TSFTRIIVVLAILRQAIGLQQTPSNQVLLGMSLFLSIFIMAPIYQKVNDVAIEPYLNEQV 120

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           T   A++   EP   FM +  R KDL  F  +A        +   +     +LIP+F+ S
Sbjct: 121 TSVQALELAKEPMKAFMLSQVRLKDLETFAKIAG----YDKLESPEETPLIVLIPAFVTS 176

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+ +F IGF+  +PFLI+D++VA+++MAMGMMML P  +SLPFK++ FVL+DGWSL++ 
Sbjct: 177 ELQTAFIIGFMFFIPFLIVDLVVASVLMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVMG 236

Query: 240 NLVKSF 245
            L KSF
Sbjct: 237 TLAKSF 242


>gi|332558490|ref|ZP_08412812.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides WS8N]
 gi|332276202|gb|EGJ21517.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides WS8N]
          Length = 267

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 90/220 (40%), Positives = 138/220 (62%), Gaps = 4/220 (1%)

Query: 26  VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
            +      +  +  ++   + T L++ P L++ ++ F R IIV SILR  +G    PPN 
Sbjct: 49  TVTEGTGGTSYSLSLQILALMTALTVLPSLVLGMSAFTRIIIVLSILRQALGTQQTPPNQ 108

Query: 86  VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145
           V+I+LALF+TF+VM PTL    E  + P ++ QI    AI+R       F+  NTR+ DL
Sbjct: 109 VLIALALFLTFFVMQPTLGALYEQSLSPFLDGQIEAQPAIERGGAIMKDFLIANTRQNDL 168

Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
            +F D+A +        +   + +  L+P+FM SEL+ +F+IGFL+ LPFL+IDM++A+I
Sbjct: 169 LMFSDLAGAG----PYAEPTEVPFSTLLPAFMTSELKTAFQIGFLLFLPFLVIDMVIASI 224

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +MA+GMMML P  +SLPFK++ FVL+DGW+L V +L  S+
Sbjct: 225 LMALGMMMLSPMLVSLPFKLLLFVLVDGWALTVGSLAASY 264


>gi|327441040|dbj|BAK17405.1| flagellar biosynthesis pathway, component FliP [Solibacillus
           silvestris StLB046]
          Length = 221

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 95/215 (44%), Positives = 146/215 (67%), Gaps = 4/215 (1%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
           +DL   +  V    + T+LS+AP LLI++T F R +IV S  RT +    +PPN VII L
Sbjct: 11  SDLGNVSTSVTLLFLLTVLSLAPSLLILMTSFARIVIVLSFTRTALATNQMPPNQVIIGL 70

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           ALF+TF++M+PT  +  E  +QPL + +I    A  R   PF  FM  +TR+KDL LF++
Sbjct: 71  ALFLTFFIMAPTFQQVNEQALQPLFDEEINLEEAYDRATIPFKQFMAQHTRQKDLELFIE 130

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
              + + +      + I   +L+P+F +SE++ +F++GF+I +PFL+IDM+VA+ +M+MG
Sbjct: 131 YNQAEYPD----SIEEIPMTLLVPAFALSEIKTAFQMGFMIFIPFLVIDMVVASTLMSMG 186

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMMLPP  ISLPFK++ FVL+DGW L++++L++SF
Sbjct: 187 MMMLPPVMISLPFKILLFVLVDGWYLVMKSLLQSF 221


>gi|332533116|ref|ZP_08408985.1| flagellar biosynthetic protein FliP [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332037398|gb|EGI73852.1| flagellar biosynthetic protein FliP [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 246

 Score =  195 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 90/246 (36%), Positives = 142/246 (57%), Gaps = 5/246 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSI-STWIVRTFGIFTILSIAPILLIMV 59
           M ++      +V    V A+      +   AD +   +  ++   I T LS  P  +IM+
Sbjct: 1   MTKWLLIIFAMVFVPNVSAEGIDALTITTNADGTQDYSVTLQVLAIMTALSFIPAAIIMM 60

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R I+V +ILR  +G+   P N V++ ++LF++ ++M+P   +  E  I+P +N Q+
Sbjct: 61  TSFTRIIVVLAILRQAIGLQQTPSNQVLLGMSLFLSIFIMAPIYQQVNERAIEPYLNEQV 120

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           T   A++   EP   FM +  R KDL  F  +A        +         +LIP+F+ S
Sbjct: 121 TSVEALELAKEPMKAFMLSQVRLKDLETFAKIAG----YDQLNSPQDTPLIVLIPAFVTS 176

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+ +F IGF+  +PFLI+D++VA+++MAMGMMML P  +SLPFK++ FVL+DGWSL++ 
Sbjct: 177 ELQTAFIIGFMFFIPFLIVDLVVASVLMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVMG 236

Query: 240 NLVKSF 245
            L KSF
Sbjct: 237 TLAKSF 242


>gi|269792928|ref|YP_003317832.1| flagellar biosynthetic protein FliP [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100563|gb|ACZ19550.1| flagellar biosynthetic protein FliP [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 247

 Score =  195 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 87/207 (42%), Positives = 135/207 (65%), Gaps = 4/207 (1%)

Query: 39  IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
            ++   + T+LS+AP +++M+T F R ++V   +R  MG+  +PPN VI SLALF+TF+ 
Sbjct: 44  TLQIVALMTVLSMAPAIILMLTSFTRILVVLGFVRNAMGLQQMPPNQVIASLALFLTFFT 103

Query: 99  MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
           MSP  D+  +  + P M  +I+   A   V  P   FM   TRE +LSL + +A      
Sbjct: 104 MSPVWDQVYKGALVPYMRGEISAQRAFDGVEGPVRAFMLRQTREPELSLMVRLAKMKQPK 163

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
                   +  R+LIP+F+ISEL+ +F++G +I +PF+++DMIV++++M+MGM+MLPP  
Sbjct: 164 ----NPSEVPTRVLIPAFVISELKTAFQMGVVIFIPFIVVDMIVSSVLMSMGMIMLPPMM 219

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ISLPFKV+ FV+ DGW L++ +LV SF
Sbjct: 220 ISLPFKVLLFVMADGWDLVIASLVSSF 246


>gi|91792694|ref|YP_562345.1| flagellar biosynthesis protein FliP [Shewanella denitrificans
           OS217]
 gi|91714696|gb|ABE54622.1| flagellar biosynthetic protein FliP [Shewanella denitrificans
           OS217]
          Length = 247

 Score =  195 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 87/230 (37%), Positives = 139/230 (60%), Gaps = 6/230 (2%)

Query: 18  FAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTG 75
           FA+  L  V         + + V  +   + T +S  P ++IM+T F R I+V SILR  
Sbjct: 20  FAEGILPAVTVKTGADGSAEYSVTMQILILMTAMSFIPAMVIMLTSFTRIIVVLSILRQA 79

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVF 135
           +G+   P N V+I ++LFMTF++MSP  D+     ++P +N  +T   + +    P   F
Sbjct: 80  LGLQQTPSNQVLIGISLFMTFFIMSPVFDKIYTEAVEPYINETMTLQQSYEVGKLPIKSF 139

Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195
           M +  R  DL  F++++        IT  +     ++IP+F+ SEL+ +F+IGF++ +PF
Sbjct: 140 MLSQLRLTDLQTFVEISGYKG----ITSPEEAPMSVIIPAFITSELKTAFQIGFMLFIPF 195

Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           L++D++VA+I+MAMGMMML P  +SLPFK++ FVL+DGWSL++  L  SF
Sbjct: 196 LVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVMGTLANSF 245


>gi|168704086|ref|ZP_02736363.1| flagellar biosynthetic protein FliP [Gemmata obscuriglobus UQM
           2246]
          Length = 224

 Score =  195 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 84/227 (37%), Positives = 139/227 (61%), Gaps = 7/227 (3%)

Query: 21  SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
             L D +N P  L+       V+T  +  + ++ P  L+ +TCF R +IV S +R G+G 
Sbjct: 2   GDLADFVNGPNGLNFQNLSPPVQTALMLGLSALLPAALMTMTCFTRVVIVLSFVRQGLGA 61

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
            +VPPNLV+  LALF+T +VM PT     +   QP +  QIT   A +   + +  FM  
Sbjct: 62  QNVPPNLVLTGLALFITLFVMQPTFAEIDQKAYQPYLQKQITGPQAFKTGTDIYKQFMLR 121

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
            TR++DL+LF+ ++  +     + K +   +  ++P+F+ISEL+ +F +GF I LPFL++
Sbjct: 122 QTRKQDLALFLHLSKHT-----VEKAEDAPFLTVVPAFLISELKTAFIMGFCIYLPFLMV 176

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           D++V++++ +MGM+M+PP +IS PFK++ FVL DGW L+   +  S+
Sbjct: 177 DLVVSSVLTSMGMVMMPPVTISAPFKILLFVLADGWHLVTYAIALSY 223


>gi|269960157|ref|ZP_06174533.1| flagellar assembly protein [Vibrio harveyi 1DA3]
 gi|269835128|gb|EEZ89211.1| flagellar assembly protein [Vibrio harveyi 1DA3]
          Length = 255

 Score =  195 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 79/232 (34%), Positives = 128/232 (55%), Gaps = 4/232 (1%)

Query: 14  PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73
           P +          ++        +  ++   + T LS  P  ++M T F R I+V +ILR
Sbjct: 27  PTMAADNGLTILSVSDGDTQQEYSVKLQILLLMTALSFLPAFILMATSFTRIIVVLAILR 86

Query: 74  TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133
             +G+   PPN V++ +AL +T  +M P      +   +P  N +IT   A     +P  
Sbjct: 87  QALGLQQSPPNRVLVGIALALTLLIMRPVWTDIHDNAFKPYDNGEITLMQAFSVAEKPVR 146

Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
            FM   T +  L   + +A+           + I + +++P+F+ISEL+ +F+IGF++ +
Sbjct: 147 NFMLAQTHQSSLEQMLRIANEPID----QNVEDISFAVVLPAFVISELKTAFQIGFMLFI 202

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           PFLIID++VA+++MAMGMMML P  ISLPFK++ FVL+DGW++ V  L  SF
Sbjct: 203 PFLIIDLVVASVLMAMGMMMLSPLIISLPFKLVVFVLVDGWAMTVGTLSASF 254


>gi|268679749|ref|YP_003304180.1| flagellar biosynthetic protein FliP [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268617780|gb|ACZ12145.1| flagellar biosynthetic protein FliP [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 238

 Score =  195 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 99/241 (41%), Positives = 154/241 (63%), Gaps = 7/241 (2%)

Query: 8   ALFLVTPELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
            L L    + F   ++  V   ++ P         +    + TIL +AP L+ M+T F R
Sbjct: 1   MLLLSLTPMAFGADTIPTVNLSLSAPDSPQQLVTSMNLVLVLTILVLAPSLIFMMTSFLR 60

Query: 65  FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
            +IVFS LR  +G   +PP+ V++SLA+ +TF++M P +  S ++ I+P +  +++   A
Sbjct: 61  LLIVFSFLRQALGTQQMPPSQVMVSLAMILTFFIMEPVMKESYDVAIKPYLAEKMSYQEA 120

Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
            ++ + PF  FM  NTREKDL+LF  + +  +        + +   + +P+FMISEL+ +
Sbjct: 121 FEKGSAPFKAFMIRNTREKDLALFFRIRNLENPK----NIEDVPLTVAMPAFMISELKTA 176

Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           FEIGFL+ LPFL+IDM+V++++MAMGMMMLPP  ISLPFK++ FVL+DGW+LLV+ LV+S
Sbjct: 177 FEIGFLLYLPFLVIDMVVSSVLMAMGMMMLPPAMISLPFKLLIFVLVDGWNLLVQRLVES 236

Query: 245 F 245
           F
Sbjct: 237 F 237


>gi|325567519|ref|ZP_08144186.1| flagellar biosynthetic protein FliP [Enterococcus casseliflavus
           ATCC 12755]
 gi|325158952|gb|EGC71098.1| flagellar biosynthetic protein FliP [Enterococcus casseliflavus
           ATCC 12755]
          Length = 254

 Score =  195 bits (496), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 101/238 (42%), Positives = 154/238 (64%), Gaps = 6/238 (2%)

Query: 11  LVTPELVFAKSS---LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67
           L+ P+  FA  +      + N+ ++ + S+  + TF + T+LS+ P+LLIM+T F R I+
Sbjct: 19  LMLPQTAFALDTEDVSSTINNLLSNGNGSSDTINTFLLLTLLSLLPVLLIMMTSFTRIIM 78

Query: 68  VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
           V S +R+ +G    PPN V+I LALF+TF++M P      +  I+P    +I++  A  R
Sbjct: 79  VLSFVRSSLGTQQNPPNQVLIGLALFLTFFIMKPVYTDVYQQAIEPFDRQEISQAEAFDR 138

Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
             +    FM   TREKD++LF   A +         +D +   +++P+F+ISELR +F I
Sbjct: 139 SEKRIKAFMMVQTREKDIALF---AEADGETEKYHSSDDVPLTVMVPAFIISELRTAFSI 195

Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GFLI +PFLIID++V++I+M+MGMMML P  ISLPFK++ FVL+DGW L+VE+L+KSF
Sbjct: 196 GFLIFIPFLIIDLVVSSILMSMGMMMLSPIMISLPFKILLFVLVDGWYLIVESLIKSF 253


>gi|330876029|gb|EGH10178.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|331016991|gb|EGH97047.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 250

 Score =  195 bits (496), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 93/220 (42%), Positives = 138/220 (62%), Gaps = 4/220 (1%)

Query: 26  VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
           + N        +  ++   I T LS  P  ++++T F R IIVFSILR  +G+   P N 
Sbjct: 32  LSNGADGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQ 91

Query: 86  VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145
           ++  +ALF+T ++M+P  DR  +  +QP +  ++T   A+ +   P   FM   TR  DL
Sbjct: 92  ILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKLTAQDAVAKAQVPIKDFMLAQTRTSDL 151

Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
            LFM ++    + TDI   D     IL+P+F+ISEL+ +F+IGF+I +PFLIID++VA++
Sbjct: 152 ELFMRLS----KRTDIPTPDAAPLTILVPAFVISELKTAFQIGFMIFIPFLIIDLVVASV 207

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +MAMGMMML P  ISLPFK++ FVL+DGW+L+V  L  SF
Sbjct: 208 LMAMGMMMLSPLIISLPFKIMLFVLVDGWALIVGTLAGSF 247


>gi|28869176|ref|NP_791795.1| flagellar biosynthetic protein FliP [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213967547|ref|ZP_03395695.1| flagellar biosynthetic protein FliP [Pseudomonas syringae pv.
           tomato T1]
 gi|301382884|ref|ZP_07231302.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           tomato Max13]
 gi|302061094|ref|ZP_07252635.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           tomato K40]
 gi|302131290|ref|ZP_07257280.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|28852416|gb|AAO55490.1| flagellar biosynthetic protein FliP [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213927848|gb|EEB61395.1| flagellar biosynthetic protein FliP [Pseudomonas syringae pv.
           tomato T1]
          Length = 250

 Score =  195 bits (496), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 93/220 (42%), Positives = 138/220 (62%), Gaps = 4/220 (1%)

Query: 26  VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
           + N        +  ++   I T LS  P  ++++T F R IIVFSILR  +G+   P N 
Sbjct: 32  LSNGADGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQ 91

Query: 86  VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145
           ++  +ALF+T ++M+P  DR  +  +QP +  ++T   A+ +   P   FM   TR  DL
Sbjct: 92  ILTGMALFLTMFIMAPVFDRVNQDALQPYLAEKLTAQDAVAKAQVPIKDFMLAQTRTSDL 151

Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
            LFM ++    + TDI   D     IL+P+F+ISEL+ +F+IGF+I +PFLIID++VA++
Sbjct: 152 ELFMRLS----KRTDIPTPDAAPLTILVPAFVISELKTAFQIGFMIFIPFLIIDLVVASV 207

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +MAMGMMML P  ISLPFK++ FVL+DGW+L+V  L  SF
Sbjct: 208 LMAMGMMMLSPLIISLPFKIMLFVLVDGWALIVGTLAGSF 247


>gi|73532546|dbj|BAE19831.1| flagellar biosynthesis protein [Edwardsiella tarda]
          Length = 231

 Score =  195 bits (496), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 91/212 (42%), Positives = 137/212 (64%), Gaps = 7/212 (3%)

Query: 24  HDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
             +++ P      +W   V+T    T LS  P  L+++T F R IIV  +LRT  G  S 
Sbjct: 25  PGIISQPLAHGGQSWSLPVQTLVFLTSLSFLPAALLLMTSFTRIIIVLGLLRTP-GHPSA 83

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PPN V++ LALF+TF++MSP LD+  +   QP    +I+  TA+ R A+P   FM   TR
Sbjct: 84  PPNQVLLGLALFLTFFIMSPVLDKIYQDAYQPFSEQKISMETALDRGAKPLRAFMLRQTR 143

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           E DL+LF  +A       ++   + +  RIL+P+++ SEL+ +F+IGF + +PFLIID++
Sbjct: 144 ETDLALFSRLAKQP----EMQGPEDVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLV 199

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDG 233
           VA+++MA+GMMM+PP +ISLPFK++ FVL+DG
Sbjct: 200 VASVLMALGMMMVPPATISLPFKLMLFVLVDG 231


>gi|260767960|ref|ZP_05876894.1| flagellar biosynthesis protein FliP [Vibrio furnissii CIP 102972]
 gi|260615990|gb|EEX41175.1| flagellar biosynthesis protein FliP [Vibrio furnissii CIP 102972]
          Length = 252

 Score =  195 bits (496), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 81/242 (33%), Positives = 130/242 (53%), Gaps = 4/242 (1%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
                +    P L          ++  +     +  ++   + T LS  P  ++M T F 
Sbjct: 13  LALVLMLCAWPTLAADNGLTLFTVSDGSTQEEYSVKLQILLLMTALSFLPAFILMATSFT 72

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
           R I+V +ILR  +G+   PPN V++ +AL ++  +M P      E   +P    QIT   
Sbjct: 73  RIIVVLAILRQALGLQQSPPNRVLVGIALALSLLIMRPVWSEVYEHAFKPYDQGQITLMQ 132

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
           A     +P   FM   T++  L   + +A+           D I + +++P+F+ISEL+ 
Sbjct: 133 AFSVAEKPVRNFMLAQTQQSSLEQMLRIANEPLD----QNVDDISFAVVLPAFVISELKT 188

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
           +F+IGF++ +PFLIID++VA+++MAMGMMML P  ISLPFK++ FVL+DGW++ V  L  
Sbjct: 189 AFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKLVVFVLVDGWAMTVGTLSA 248

Query: 244 SF 245
           SF
Sbjct: 249 SF 250


>gi|150390469|ref|YP_001320518.1| flagellar biosynthetic protein FliP [Alkaliphilus metalliredigens
           QYMF]
 gi|149950331|gb|ABR48859.1| flagellar biosynthetic protein FliP [Alkaliphilus metalliredigens
           QYMF]
          Length = 267

 Score =  195 bits (496), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 92/207 (44%), Positives = 139/207 (67%), Gaps = 4/207 (1%)

Query: 39  IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
            ++   + TILSIAP +LIM+T F R +IV S LR  +     PP  +II LALF+TF+ 
Sbjct: 64  SLQILFLLTILSIAPAILIMMTSFTRIVIVLSFLRNAIATQQTPPTQIIIGLALFLTFFT 123

Query: 99  MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
           M+P         +QP +  ++ +  A++R  EP   FM   TREKDL+LF+++++S    
Sbjct: 124 MAPIATDINTNALQPYLAEELGQEEALERAMEPIREFMFRQTREKDLALFIEVSNSEMP- 182

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
              T+   I    LIP+F+ISEL+ +F++GF++ +PF++IDM+VA+ +MAMGMMMLPP  
Sbjct: 183 ---TEVADIATSTLIPAFIISELKTAFQMGFILFIPFIVIDMVVASTLMAMGMMMLPPAM 239

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ISLPFK++ F+++DGW++LV  L+ SF
Sbjct: 240 ISLPFKLLLFIMVDGWNILVRALIMSF 266


>gi|239909255|ref|YP_002955997.1| flagellar biosynthetic protein FliP [Desulfovibrio magneticus RS-1]
 gi|239799122|dbj|BAH78111.1| flagellar biosynthetic protein FliP [Desulfovibrio magneticus RS-1]
          Length = 253

 Score =  195 bits (496), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 97/248 (39%), Positives = 148/248 (59%), Gaps = 7/248 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI---VRTFGIFTILSIAPILLI 57
           ++   FF   L  P L  A+ +    +++ A  +    +   +      T+LS+AP  ++
Sbjct: 7   LLALAFFGALLALPTLALAQDAPSLTLSLAAGQTSPERVSTLLEILFALTVLSLAPSFVL 66

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
            VT F R I+VFS LR  MG+  VPP  ++ SLA+F+T  +M PT     +  +QP MN 
Sbjct: 67  TVTSFTRIIVVFSFLRQAMGVQQVPPTQILASLAIFLTAVIMYPTGKAINDNALQPYMNE 126

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
           +I  T A+++   P   F+  +TREKDLS+F  +               +   +L   FM
Sbjct: 127 EIGFTEALKKAEAPLREFLFKHTREKDLSVFYTITKMERPKDKG----EVPTIMLAAGFM 182

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
           ISEL+ +F IGFLI +PFLI+DM++++I++AMGMMMLPP +I++PFK++ FVL+DGW L+
Sbjct: 183 ISELKTAFTIGFLIYIPFLILDMVISSILLAMGMMMLPPATIAMPFKLLLFVLVDGWGLI 242

Query: 238 VENLVKSF 245
           V +LV SF
Sbjct: 243 VASLVNSF 250


>gi|330964683|gb|EGH64943.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 250

 Score =  195 bits (495), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 93/220 (42%), Positives = 138/220 (62%), Gaps = 4/220 (1%)

Query: 26  VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
           + N        +  ++   I T LS  P  ++++T F R IIVFSILR  +G+   P N 
Sbjct: 32  LSNGADGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQ 91

Query: 86  VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145
           ++  +ALF+T ++M+P  DR  +  +QP +  ++T   A+ +   P   FM   TR  DL
Sbjct: 92  ILTGMALFLTMFIMAPVFDRVNQDALQPYLAGKLTAQDAVAKAQVPIKDFMLAQTRTSDL 151

Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
            LFM ++    + TDI   D     IL+P+F+ISEL+ +F+IGF+I +PFLIID++VA++
Sbjct: 152 ELFMRLS----KRTDIPTPDAAPLTILVPAFVISELKTAFQIGFMIFIPFLIIDLVVASV 207

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +MAMGMMML P  ISLPFK++ FVL+DGW+L+V  L  SF
Sbjct: 208 LMAMGMMMLSPLIISLPFKIMLFVLVDGWALIVGTLAGSF 247


>gi|167623389|ref|YP_001673683.1| flagellar biosynthesis protein FliP [Shewanella halifaxensis
           HAW-EB4]
 gi|167353411|gb|ABZ76024.1| flagellar biosynthetic protein FliP [Shewanella halifaxensis
           HAW-EB4]
          Length = 249

 Score =  195 bits (495), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 88/247 (35%), Positives = 142/247 (57%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIM 58
           ++     AL  + P  +     L  V         + + V  +   + T LS  P ++IM
Sbjct: 5   ILLLAGLALTFMAPTALAENGILPAVTVSTGADGSTQYSVTMQILLLMTALSFIPAMVIM 64

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R I+V SILR  +G+   P N V+I +++FMTF++MSP  D+     +QP +   
Sbjct: 65  LTSFTRIIVVLSILRQAIGLQQTPSNQVLIGISMFMTFFIMSPVFDKIYVQAVQPYIEQG 124

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           +    A      P   FM   TR  DL+ F++++       +I + +     ++IP+F+ 
Sbjct: 125 MPLQDAFTTGQGPLKDFMLAQTRNSDLNTFIEISG----YQNINEPEDAPMTVIIPAFIT 180

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF++ +PFL++D++VA+I+MAMGMMML P  +SLPFK++ FVL+DGWSL++
Sbjct: 181 SELKTAFQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVM 240

Query: 239 ENLVKSF 245
             L  SF
Sbjct: 241 GTLANSF 247


>gi|119476307|ref|ZP_01616658.1| flagellar biosynthesis protein [marine gamma proteobacterium
           HTCC2143]
 gi|119450171|gb|EAW31406.1| flagellar biosynthesis protein [marine gamma proteobacterium
           HTCC2143]
          Length = 270

 Score =  195 bits (495), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 88/220 (40%), Positives = 143/220 (65%), Gaps = 4/220 (1%)

Query: 26  VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
           V    +     T  ++   + T+L++ P  L+M+T F R I+V +ILR  +G+ S P N 
Sbjct: 53  VTTNASGGQDYTVTIQILAVMTVLTLLPSFLMMMTAFTRVIVVLAILRQAIGLQSTPSNQ 112

Query: 86  VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145
           +I+ LA+F+T ++M P  +++    +QP MN +IT   AI   ++PF  FM + TRE DL
Sbjct: 113 IILGLAIFLTIFIMLPVFEQANTQALQPYMNEKITSLEAIDAASKPFHEFMLSQTRETDL 172

Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
            LFM ++++    T I   +   + +L P+F+ SEL+ +F++GF++ +PFL+ID++VA++
Sbjct: 173 DLFMRISNT----TGIQTPEETPFFVLAPAFLTSELKTAFQMGFVLFIPFLVIDLVVASV 228

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +MAMGMMML P  ISLPFK++ FVL+DGW ++V  L  S+
Sbjct: 229 LMAMGMMMLSPIIISLPFKIMLFVLVDGWVMIVGTLAASY 268


>gi|303246798|ref|ZP_07333075.1| flagellar biosynthetic protein FliP [Desulfovibrio fructosovorans
           JJ]
 gi|302491815|gb|EFL51695.1| flagellar biosynthetic protein FliP [Desulfovibrio fructosovorans
           JJ]
          Length = 252

 Score =  195 bits (495), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 89/209 (42%), Positives = 135/209 (64%), Gaps = 4/209 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           + ++      T+LS+AP  ++ VT F R IIVFS LR  MG+  VPP+ ++ SLA+F+T 
Sbjct: 46  STLLEILFALTVLSLAPAFVLTVTSFTRIIIVFSFLRQAMGVPQVPPSQILASLAIFLTC 105

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
            +M PT     +  +QP +N QI  T A+++   P   F+  +TREKDLS+F  +     
Sbjct: 106 VIMYPTGKAINDDALQPYLNEQIGFTEALKKAETPLREFLFKHTREKDLSVFYTVTKMER 165

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
                     +   +L   F+ISEL+ +F IGFLI +PFLI+DM++++I++AMGMMMLPP
Sbjct: 166 PKDKA----EVPTTMLAAGFIISELKTAFTIGFLIYIPFLILDMVISSILLAMGMMMLPP 221

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            +I++PFK++ FVL+DGW L+V ++V SF
Sbjct: 222 ATIAMPFKLLLFVLVDGWGLMVGSIVNSF 250


>gi|317129193|ref|YP_004095475.1| flagellar biosynthetic protein FliP [Bacillus cellulosilyticus DSM
           2522]
 gi|315474141|gb|ADU30744.1| flagellar biosynthetic protein FliP [Bacillus cellulosilyticus DSM
           2522]
          Length = 222

 Score =  195 bits (495), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 91/195 (46%), Positives = 134/195 (68%), Gaps = 4/195 (2%)

Query: 51  IAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMG 110
           IAP +LI++TCF R ++V S +R+G+    +PPN V++ LALF+TF++M+P      E  
Sbjct: 32  IAPSILILMTCFTRIVVVLSFVRSGLATQQMPPNQVLVGLALFITFFIMAPVFSEVNEQA 91

Query: 111 IQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYR 170
           +QP+   ++T+  A    A P   FM  +TREKDL+LFM  A      T     D I   
Sbjct: 92  LQPMFAGEMTQEEAFDAAALPMKEFMAQHTREKDLALFMGYAGLPRPET----LDDIPLT 147

Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230
            L+P+F ISEL+ +F+IGF+I +PFL+IDM+VA+++M+MGMMMLPP  I+LPFK++ FV+
Sbjct: 148 ALVPAFAISELKTAFQIGFMIFIPFLVIDMVVASVLMSMGMMMLPPVMIALPFKILLFVM 207

Query: 231 IDGWSLLVENLVKSF 245
           +DGW L+V +L+ SF
Sbjct: 208 VDGWHLVVRSLLLSF 222


>gi|315453643|ref|YP_004073913.1| flagellar biosynthesis protein [Helicobacter felis ATCC 49179]
 gi|315132695|emb|CBY83323.1| flagellar biosynthesis protein [Helicobacter felis ATCC 49179]
          Length = 252

 Score =  195 bits (495), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 98/224 (43%), Positives = 151/224 (67%), Gaps = 4/224 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           ++   ++ P   +     +    + T+L +AP L++ +T F R I+VFS LRT +G    
Sbjct: 29  TIDLSLSAPHTPTQLVTTLNVVLVLTLLVLAPSLVLTMTSFIRLIVVFSFLRTALGTQQT 88

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PP  +++SLAL +TF++M PT  +S ++ I+P +  +I+ T A +R   PF  FM  NTR
Sbjct: 89  PPTQILVSLALILTFFIMEPTAKKSYKIAIKPYLAEKISYTQAFERGVVPFKEFMLKNTR 148

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           EKDL+LF  + +  +        + +   +L+P+FMISEL+ +F+IGFL+ LPFL+IDM+
Sbjct: 149 EKDLALFFRIRNLENPK----DVNSVPLSVLVPAFMISELKTAFQIGFLLYLPFLVIDMV 204

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           V++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LL+ENLV SF
Sbjct: 205 VSSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLIENLVASF 248


>gi|315127309|ref|YP_004069312.1| flagellar biosynthesis protein FliP [Pseudoalteromonas sp. SM9913]
 gi|315015823|gb|ADT69161.1| flagellar biosynthesis protein FliP [Pseudoalteromonas sp. SM9913]
          Length = 246

 Score =  195 bits (495), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 89/246 (36%), Positives = 144/246 (58%), Gaps = 5/246 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSI-STWIVRTFGIFTILSIAPILLIMV 59
           M ++  F   +V    V A+      +   AD +   +  ++   I T +S  P  +IM+
Sbjct: 1   MTKWLLFLFAMVFVPGVNAEGIDALTITTNADGTQDYSVTLQVLAIMTAMSFIPAAIIMM 60

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R I+V +ILR  +G+   P N V++ ++LF++ ++M+P  ++  E  I+P ++ Q+
Sbjct: 61  TSFTRIIVVLAILRQAIGLQQTPSNQVLLGMSLFLSIFIMAPIYEQINERAIEPYLSEQV 120

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           T   A+    EP   FM +  R KDL  F  +A        +   +     +LIP+F+ S
Sbjct: 121 TSLEALDLAKEPMKAFMLSQVRIKDLETFAKIAG----YDQLDSPEATPMVVLIPAFVTS 176

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+ +F IGF+  +PFLI+D++VA+++MAMGMMML P  +SLPFK++ FVL+DGWSL++ 
Sbjct: 177 ELQTAFIIGFMFFIPFLIVDLVVASVLMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVMG 236

Query: 240 NLVKSF 245
            L KSF
Sbjct: 237 TLAKSF 242


>gi|32490799|ref|NP_871053.1| flagellar biosynthesis protein FliP [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166005|dbj|BAC24196.1| fliP [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 263

 Score =  195 bits (495), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 89/206 (43%), Positives = 137/206 (66%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T    T L+  P L+++++ F R IIV SILR  +G  + PPN ++I L+L +T ++M
Sbjct: 59  VQTLLFLTSLTFIPALILLMSSFTRIIIVLSILRNALGTPTAPPNQILIGLSLCLTIFIM 118

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP L++       P   N+I    AI    +P   FM + TREKDL+ +  ++    +  
Sbjct: 119 SPVLEKIYYDSYLPFYQNKINLQKAIIYAEQPIKEFMISQTREKDLAFYSKIS----KTN 174

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           +I     +  +ILIP+F+ SEL+ +F+IGF + +PFLIIDM+VA+I+MA+GMMMLPPT++
Sbjct: 175 EINSPKEVPIKILIPAFVTSELKTAFQIGFTLFIPFLIIDMVVASILMALGMMMLPPTTV 234

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FV+ DGW +L+ +LV+SF
Sbjct: 235 SLPFKLMLFVMADGWQILLGSLVQSF 260


>gi|302387779|ref|YP_003823601.1| flagellar biosynthetic protein FliP [Clostridium saccharolyticum
           WM1]
 gi|302198407|gb|ADL05978.1| flagellar biosynthetic protein FliP [Clostridium saccharolyticum
           WM1]
          Length = 220

 Score =  194 bits (494), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 84/212 (39%), Positives = 133/212 (62%), Gaps = 4/212 (1%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
                 +  F I TI+S+ P +L+M+T F R +I+ S  R  MG+   PPN+V++ +ALF
Sbjct: 11  GGRVPTLELFLILTIISLLPSILVMMTSFTRIVIILSFTRNAMGIQQTPPNMVLVGIALF 70

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           +T ++M P +        QP +  +I++  A++R   P   FM   T +  L+LF DM++
Sbjct: 71  LTLFIMDPVIKDVNTNAYQPYIKEEISQGEALKRAQVPMKRFMLKQTEKTTLTLFTDMSN 130

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
           +          + +   ++IPSFM SEL+R+F  GF+I LPF+++D++V++ +M+MGM+M
Sbjct: 131 TDMPE----NIEDLPMTVVIPSFMTSELKRAFTAGFMIFLPFMLVDIVVSSTLMSMGMVM 186

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LPP  ISLPFK++ FV ++GW LL  NLVKSF
Sbjct: 187 LPPAMISLPFKLLLFVTVNGWELLFTNLVKSF 218


>gi|220913717|ref|YP_002489026.1| flagellar biosynthetic protein FliP [Arthrobacter chlorophenolicus
           A6]
 gi|219860595|gb|ACL40937.1| flagellar biosynthetic protein FliP [Arthrobacter chlorophenolicus
           A6]
          Length = 262

 Score =  194 bits (494), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 85/209 (40%), Positives = 131/209 (62%), Gaps = 4/209 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  V T    T+LS+AP LL+M+T F +  +V ++ R  + + S+PPN V+  LALF++ 
Sbjct: 57  STAVVTLIGITLLSVAPALLLMMTSFTKIFVVLAMTRNALSLPSIPPNQVLAGLALFLSL 116

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           +VM P L       +QP +N  +    A    A P   FM  +TRE+D++L    A   +
Sbjct: 117 FVMWPVLTEINTDAVQPYLNGNLDFNGAFSAGAGPLQQFMLGHTREEDIALMTRAARMPN 176

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
                     +  + LIP+FMISELR +F IGF+I +PFL+ID++V+  +M+MGMMMLPP
Sbjct: 177 PENPGA----VPLQTLIPAFMISELRAAFIIGFVIFIPFLVIDLVVSAALMSMGMMMLPP 232

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             ISLPFK++ F+L+DGW L++ +L++S+
Sbjct: 233 VMISLPFKILLFILVDGWGLVITSLIQSY 261


>gi|313682238|ref|YP_004059976.1| flagellar biosynthetic protein flip [Sulfuricurvum kujiense DSM
           16994]
 gi|313155098|gb|ADR33776.1| flagellar biosynthetic protein FliP [Sulfuricurvum kujiense DSM
           16994]
          Length = 244

 Score =  194 bits (494), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 98/243 (40%), Positives = 152/243 (62%), Gaps = 4/243 (1%)

Query: 2   IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
           + +  F + L+         +++  +  P   +     +    + T+L +AP L++++T 
Sbjct: 4   LAFFLFMIPLMLWGADPQVPAMNFNLTAPETPAEVVSSLNVLLVLTVLFLAPSLVLVMTT 63

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F RF+IVF  LR  +G   VPP  +++ LAL +T +VM P   ++ + GI+P    +IT 
Sbjct: 64  FTRFVIVFGFLRQALGTQQVPPTQLLVMLALILTVFVMEPVATKAYDEGIKPYSEEKITY 123

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
             A ++  EPF  FM  NTREKDL+LF+ + H  +          +   I+IP+FMISEL
Sbjct: 124 DEAFEKTTEPFKNFMVRNTREKDLALFLRIRHMQNP----QSIKEVPLTIVIPAFMISEL 179

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
           + +FEIGFL+ LPFL+IDM+VA+I+M+MGMMMLPP  IS+PFK++ FV++DGW+LL+ NL
Sbjct: 180 KTAFEIGFLLFLPFLVIDMVVASILMSMGMMMLPPVMISMPFKILVFVMVDGWNLLIGNL 239

Query: 242 VKS 244
           + S
Sbjct: 240 IAS 242


>gi|163781853|ref|ZP_02176853.1| flagellar biosynthetic protein FliP [Hydrogenivirga sp. 128-5-R1-1]
 gi|159883073|gb|EDP76577.1| flagellar biosynthetic protein FliP [Hydrogenivirga sp. 128-5-R1-1]
          Length = 225

 Score =  194 bits (494), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 87/194 (44%), Positives = 128/194 (65%), Gaps = 1/194 (0%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +LIM T F R ++V S+LR  +G+  VPPN VI+SLALF+TF++M P  +      +Q
Sbjct: 31  PSILIMTTSFIRIVVVLSVLRQALGVPQVPPNQVIVSLALFLTFFIMKPVFENINTNALQ 90

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH-SSHRNTDITKNDHIEYRI 171
           P M  QI++     RV      FM   TR+  + +FM++A         I K   I   I
Sbjct: 91  PYMKEQISDQEFFNRVTGSLKGFMLKQTRKDTVEVFMEVAKLKKEEREKIRKPSDIPLSI 150

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           LIP+FM+SEL  +FEI FL+ +PFLI+D++VA+I+++MG++M+PP  ISLPFK++ FVL 
Sbjct: 151 LIPAFMVSELTTAFEIVFLLYIPFLIVDIVVASILISMGIIMIPPQIISLPFKIMLFVLA 210

Query: 232 DGWSLLVENLVKSF 245
           +GW L+V +LV+S+
Sbjct: 211 NGWELVVLSLVRSY 224


>gi|260779323|ref|ZP_05888215.1| flagellar biosynthesis protein FliP [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260605487|gb|EEX31782.1| flagellar biosynthesis protein FliP [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 252

 Score =  194 bits (494), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 83/244 (34%), Positives = 134/244 (54%), Gaps = 4/244 (1%)

Query: 2   IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
           I     +L    P +          ++  A     +  ++   + T LS  P  ++M T 
Sbjct: 12  ILIGLVSLLFAFPSVANESGLTILSVSDGATQQEYSVKLQILLLMTALSFLPAFILMATS 71

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F R I+V +ILR  +G+   PPN V++ +AL ++  +M P      +   QP  N +IT 
Sbjct: 72  FTRIIVVLAILRQALGLQQSPPNRVLVGIALALSLLIMRPVWTDIYQNAFQPYDNGEITL 131

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
             A     +P   FM   T++  L   + +A+        T  + I + +++P+F+ISEL
Sbjct: 132 MQAFSVAEKPVRNFMLAQTQQTSLEQMLRIANEPLD----TALEDISFAVVLPAFVISEL 187

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
           + +F+IGF++ +PFLIID++VA+++MAMGMMML P  ISLPFK++ FVL+DGW++ V  L
Sbjct: 188 KTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKLVVFVLVDGWAMTVGTL 247

Query: 242 VKSF 245
             SF
Sbjct: 248 SASF 251


>gi|192359973|ref|YP_001982204.1| flagellar biosynthesis protein FliP [Cellvibrio japonicus Ueda107]
 gi|190686138|gb|ACE83816.1| Flagellar biosynthetic protein fliP [Cellvibrio japonicus Ueda107]
          Length = 279

 Score =  194 bits (494), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 95/220 (43%), Positives = 143/220 (65%), Gaps = 4/220 (1%)

Query: 26  VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
           +   P      T  ++   + T LS  P +L+M+T F R IIVFSILR  +G+   P N 
Sbjct: 62  IQTNPDGTQEYTVTLQILALMTALSFLPAILMMMTSFTRIIIVFSILRQALGLQQSPSNQ 121

Query: 86  VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145
           ++I LALF+T ++M P  D++    +QP +N QI+   A+ + A PF  FM   TRE D+
Sbjct: 122 ILIGLALFLTLFIMKPVFDQANHDALQPYINGQISAQEALAKTAAPFHRFMLAQTRESDI 181

Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
            LF+ +A    ++  I   + I + IL P+F+ISEL+ +F+IGF+I +PFLIID++V+++
Sbjct: 182 LLFVGIA----KHPPIATPEDIPFTILAPAFIISELKTAFQIGFIIFIPFLIIDIVVSSV 237

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +MAMGMMML P  ISLPFK++ FVL+DGW+++V  L  S+
Sbjct: 238 LMAMGMMMLSPLIISLPFKIMLFVLVDGWAMIVGTLAASY 277


>gi|224373184|ref|YP_002607556.1| flagellar biosynthesis protein FliP [Nautilia profundicola AmH]
 gi|223589473|gb|ACM93209.1| flagellar biosynthetic protein FliP [Nautilia profundicola AmH]
          Length = 242

 Score =  194 bits (494), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 97/245 (39%), Positives = 149/245 (60%), Gaps = 4/245 (1%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           M +     + +          +++  +  P        ++    + T+L +AP +++++T
Sbjct: 1   MKKLFLILIPIFIFAAAPQIPTVNLSLTAPETPKQLVSVLNITILLTLLVLAPSIILVMT 60

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R ++VF  LR  +G    PP  +++SLAL +TF++M P   ++   GI+P M  +I 
Sbjct: 61  SFVRLLVVFGFLRQALGTPQSPPTTLLVSLALVLTFFIMEPYAKQAYNTGIKPYMEEKIG 120

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A     +PF  FM  NTREKDL+LF  + H  +  T     D +   IL+P+FM+SE
Sbjct: 121 YDQAFNNAVKPFKKFMIKNTREKDLALFFRIRHLPNPKT----IDDVPLTILVPAFMLSE 176

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +FEIGFLI LPFLIIDM+V++I+M++GMMMLPP  ISLPFK++ FVL+DGW+L+V  
Sbjct: 177 LKTAFEIGFLIFLPFLIIDMVVSSILMSLGMMMLPPVMISLPFKILVFVLVDGWNLIVMG 236

Query: 241 LVKSF 245
           LV+SF
Sbjct: 237 LVQSF 241


>gi|323493116|ref|ZP_08098247.1| flagellar biosynthesis protein FliP [Vibrio brasiliensis LMG 20546]
 gi|323312587|gb|EGA65720.1| flagellar biosynthesis protein FliP [Vibrio brasiliensis LMG 20546]
          Length = 252

 Score =  194 bits (493), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 83/245 (33%), Positives = 134/245 (54%), Gaps = 4/245 (1%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           ++ +    L L  P            ++  A     +  ++   + T LS  P  ++M T
Sbjct: 11  LVLFTASVLLLSFPSFASESGLTILSVSDGASEQEYSVKLQILLLMTALSFLPAFILMAT 70

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R I+V +ILR  +G+   PPN V++ +AL ++  +M P          QP  N +IT
Sbjct: 71  SFTRIIVVLAILRQALGLQQSPPNRVLVGIALALSLLIMRPVWTDIYHNAFQPYDNGEIT 130

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A     +P   FM   T++  L   + +A+        T  + I + +++P+F+ISE
Sbjct: 131 LMQAFSVAEKPVRNFMLAQTQQTSLEQMLRIANEPLD----TSVEDISFAVVLPAFVISE 186

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +F+IGF++ +PFLIID++VA+++MAMGMMML P  ISLPFK++ FVL+DGW++ V  
Sbjct: 187 LKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKLVVFVLVDGWAMTVGT 246

Query: 241 LVKSF 245
           L  SF
Sbjct: 247 LSASF 251


>gi|320354332|ref|YP_004195671.1| flagellar biosynthetic protein FliP [Desulfobulbus propionicus DSM
           2032]
 gi|320122834|gb|ADW18380.1| flagellar biosynthetic protein FliP [Desulfobulbus propionicus DSM
           2032]
          Length = 246

 Score =  194 bits (493), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 94/224 (41%), Positives = 149/224 (66%), Gaps = 4/224 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           +L   +   A  +  +  ++   + TIL++AP +L+M T F R +IV S +R  MG  + 
Sbjct: 26  TLSLGIKEAATPAEVSTALQALLVLTILTVAPAILLMTTAFTRIVIVLSFVRQAMGTQNT 85

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PPN V++ LALF+TF+VM+P+L+   +  +QP +  +IT+  A++R  E    FM +  +
Sbjct: 86  PPNQVLLGLALFLTFFVMAPSLNAINDQALQPYIQEKITQQQALERSMEVMRDFMFSQVQ 145

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           E +L LF+D+               +   ILIP+FM+SEL+R+F++GF+I +PFL+IDM+
Sbjct: 146 ESELQLFIDITKEEQPADKKA----VSSSILIPAFMLSELKRAFQMGFMIYVPFLVIDML 201

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           V++++M+MGMMMLPP  ISLPFK++ FVL+DGW L+V +L+KSF
Sbjct: 202 VSSVLMSMGMMMLPPIVISLPFKLLLFVLVDGWQLVVGSLMKSF 245


>gi|254438171|ref|ZP_05051665.1| flagellar biosynthetic protein FliP [Octadecabacter antarcticus
           307]
 gi|198253617|gb|EDY77931.1| flagellar biosynthetic protein FliP [Octadecabacter antarcticus
           307]
          Length = 258

 Score =  194 bits (493), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 88/247 (35%), Positives = 148/247 (59%), Gaps = 8/247 (3%)

Query: 4   YCFFALFLVTPELVFAKSSLH----DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
               A  +V    V+A+        ++       +  +  ++   + T+L+I P  L+ V
Sbjct: 15  CVILAFCIVPFGSVYAQDGGGLPALNISTGADGETTYSLSLQILALMTVLTILPSFLLGV 74

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R IIV SILR  +G    PPN V++S+ALF+TFYVM+PT +      I P +   +
Sbjct: 75  TAFTRIIIVLSILRQALGTQQTPPNQVLLSIALFLTFYVMAPTFEDIYNNAISPYLAGDL 134

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
               AI+  A     F+  NTRE +L++F +MA     +     N+ + Y +L+P+F+ S
Sbjct: 135 PPVAAIEGAAGILSEFLVVNTREAELAMFAEMAG----DEPYASNEDVPYTVLLPAFITS 190

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+ +F+IGFL+ LPFL+ID+++A+I+M++GMMML P  ++LPFK++ FVL+DGW++ + 
Sbjct: 191 ELKTAFQIGFLLFLPFLVIDLVIASILMSLGMMMLSPMLVALPFKLLLFVLVDGWAMTIG 250

Query: 240 NLVKSFI 246
           ++  +++
Sbjct: 251 SIASTYV 257


>gi|153831725|ref|ZP_01984392.1| flagellar biosynthetic protein FliP [Vibrio harveyi HY01]
 gi|148872235|gb|EDL71052.1| flagellar biosynthetic protein FliP [Vibrio harveyi HY01]
          Length = 259

 Score =  194 bits (493), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 81/245 (33%), Positives = 131/245 (53%), Gaps = 4/245 (1%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           M+      L    P +          ++        +  ++   + T LS  P  ++M T
Sbjct: 18  MVIALLGLLLFALPTMAADNGLTILSVSDGDTQQEYSVKLQILLLMTALSFLPAFILMAT 77

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R I+V +ILR  +G+   PPN V++ +AL +T  +M P      +   +P  N +IT
Sbjct: 78  SFTRIIVVLAILRQALGLQQSPPNRVLVGIALALTLLIMRPVWTDIHDNAFKPYDNGEIT 137

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A     +P   FM   T +  L   + +A+           + I + +++P+F+ISE
Sbjct: 138 LMQAFSVAEKPVRNFMLAQTHQSSLEQMLRIANEPID----QNVEDISFAVVLPAFVISE 193

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +F+IGF++ +PFLIID++VA+++MAMGMMML P  ISLPFK++ FVL+DGW++ V  
Sbjct: 194 LKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKLVVFVLVDGWAMTVGT 253

Query: 241 LVKSF 245
           L  SF
Sbjct: 254 LSASF 258


>gi|34558376|ref|NP_908191.1| flagellar biosynthesis protein FliP [Wolinella succinogenes DSM
           1740]
 gi|34484095|emb|CAE11091.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Wolinella succinogenes]
          Length = 247

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 100/224 (44%), Positives = 149/224 (66%), Gaps = 4/224 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           +++  +  P D       +    + T+L +AP L++++T F R IIVFS LRT MG    
Sbjct: 27  TVNLSIGAPTDPGDLVSTLNIVVVLTLLVLAPSLVLVMTSFTRLIIVFSFLRTAMGTQQS 86

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PP  +++SLA+ +TF++M P   +S E+GI+P +  +I    A  +   PF  FM  NTR
Sbjct: 87  PPTQLLVSLAMVLTFFIMEPIAKQSYEIGIKPYLAKEIPYDVAFVKSVGPFKEFMIRNTR 146

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           EKDL+LF  +    +  T     + I   ++IP+FMISE++ +F+IGFLI LPFL+IDM+
Sbjct: 147 EKDLALFYRIRGMENPQT----IEDIPLTMVIPAFMISEMKTAFQIGFLIYLPFLVIDMV 202

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +++I+MAMGMMMLPP  ISLPFK++ FVL+DG++LLV +LV+SF
Sbjct: 203 ISSILMAMGMMMLPPVMISLPFKILVFVLVDGFNLLVGSLVESF 246


>gi|311695203|gb|ADP98076.1| flagellar biosynthesis protein FliP [marine bacterium HP15]
          Length = 258

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 88/232 (37%), Positives = 145/232 (62%), Gaps = 5/232 (2%)

Query: 14  PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73
           P  +    +              +  ++   + T L+  P +L+M+T F R I+VF+ILR
Sbjct: 30  PSGIPGIPAFTVTPGEGEGAQEYSVTLQILALMTALTFLPAMLMMMTSFTRIIVVFAILR 89

Query: 74  TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133
             +G+ S P N +++ LALF++ ++M P L+ +  + +QP M  ++T   A++  ++PF 
Sbjct: 90  QAIGLQSTPSNQILLGLALFLSIFIMKPVLEEANRVALQPYMQEEVTSLEAVELASQPFR 149

Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
            FM   TRE DL+LFM ++     +T       + + IL+P+F+ SEL+ +F+IGF++ +
Sbjct: 150 KFMLEQTRESDLALFMRIS-----DTQYETPQDVSFWILMPAFVTSELKTAFQIGFILFI 204

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           PFLIIDM+VA+++MAMGMMML P  ISLPFK++ FVL+DGW+L++  L  S+
Sbjct: 205 PFLIIDMVVASVLMAMGMMMLSPIIISLPFKIMLFVLVDGWALIMGTLAASY 256


>gi|149193956|ref|ZP_01871054.1| flagellar biosynthesis protein P [Caminibacter mediatlanticus TB-2]
 gi|149135909|gb|EDM24387.1| flagellar biosynthesis protein P [Caminibacter mediatlanticus TB-2]
          Length = 243

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 101/246 (41%), Positives = 151/246 (61%), Gaps = 5/246 (2%)

Query: 1   MIRYCFFALFLVTPELVFAK-SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           M +   F LF         +  +++  +  P +      ++    + TIL +AP ++++ 
Sbjct: 1   MKKILIFFLFCTVIFAATPQIPTVNLSLTAPENPKQLVTVLNIAILMTILVLAPSIVLVA 60

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R ++VF  LR  +G    PP  +++SL+L +TF++M P    + + GI+P M  +I
Sbjct: 61  TSFVRLLVVFGFLRQALGTPQSPPTTLLVSLSLVLTFFIMEPYAKEAYKSGIKPYMEQKI 120

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
               A  R  +PF  FM  NTREKDL+LF  + H  +  T     D +   IL+P+FMIS
Sbjct: 121 GYEEAFNRAVKPFKRFMIKNTREKDLALFFRIRHLPNPKT----IDDVPLSILVPAFMIS 176

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+ +FEIGFLI LPFLIIDM+V++I+M++GMMMLPP  ISLPFK++ F+L+DGW+L+V 
Sbjct: 177 ELKTAFEIGFLIFLPFLIIDMVVSSILMSLGMMMLPPVMISLPFKILVFILVDGWNLIVM 236

Query: 240 NLVKSF 245
            LV SF
Sbjct: 237 GLVNSF 242


>gi|188025878|ref|ZP_02997695.1| hypothetical protein PROSTU_02049 [Providencia stuartii ATCC 25827]
 gi|188020828|gb|EDU58868.1| hypothetical protein PROSTU_02049 [Providencia stuartii ATCC 25827]
          Length = 185

 Score =  194 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 89/187 (47%), Positives = 130/187 (69%), Gaps = 4/187 (2%)

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIV  +LR  +G  S PPN V++ LALF+TF+VMSP  D++     QP   ++
Sbjct: 1   MTSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFVMSPVADQAYREAYQPFSEDK 60

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+  TA++R   PF  FM   TRE DL+LF  +A       +I +   +  RIL+P+F+ 
Sbjct: 61  ISLETALERGTAPFRTFMLGQTRESDLALFARIAKVG----EIQEAKDVPMRILVPAFIT 116

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF I +PFLIID++VA+++MA+GMMM+PP ++SLPFK++ FVL+DGW LL+
Sbjct: 117 SELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGWQLLL 176

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 177 GSLSQSF 183


>gi|219670147|ref|YP_002460582.1| flagellar biosynthesis protein FliP [Desulfitobacterium hafniense
           DCB-2]
 gi|219540407|gb|ACL22146.1| flagellar biosynthetic protein FliP [Desulfitobacterium hafniense
           DCB-2]
          Length = 259

 Score =  194 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 105/245 (42%), Positives = 159/245 (64%), Gaps = 6/245 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           ++ +  +   LV  + V A     D     A+ + ST  ++   + T++SIAP +L+++T
Sbjct: 20  LLFFLIWGGILVNTDSVLAAGLTLDFGTTTAEQTSST--LQILLLLTVISIAPAILVLMT 77

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R IIV S +R  +G   +PPN V+I L+LF+TF+VM+PT +      +QP M NQIT
Sbjct: 78  SFTRTIIVLSFVRNALGTQQLPPNQVLIGLSLFLTFFVMAPTWNEINTQALQPYMQNQIT 137

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
           +  A+Q+   P   FM   TREKDL+LF+ +A      T       I   +LIP+F+ISE
Sbjct: 138 QAEALQQAEAPLRQFMFEQTREKDLTLFVGLARMEQPQTYG----DIPTYVLIPAFVISE 193

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +F++GF I +PF++IDM+VA+++M+MGMMMLPP  +SLPFK++ FVL+DGW L+V++
Sbjct: 194 LKTAFQMGFAIFIPFMVIDMLVASVLMSMGMMMLPPMMVSLPFKILLFVLVDGWHLVVQS 253

Query: 241 LVKSF 245
           LV SF
Sbjct: 254 LVTSF 258


>gi|77359751|ref|YP_339326.1| flagellar biosynthesis protein FliP [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874662|emb|CAI85883.1| flagellar biosynthesis [Pseudoalteromonas haloplanktis TAC125]
          Length = 246

 Score =  193 bits (491), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 85/242 (35%), Positives = 136/242 (56%), Gaps = 4/242 (1%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
                + L  P +         +          +  ++   I T LS  P  +IM+T F 
Sbjct: 5   LLLIFVMLFVPNVSAEGIDALTITTNADGTQDYSVTLQVLAIMTALSFIPAAIIMMTSFT 64

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
           R I+V +ILR  +G+   P N V++ ++LF++ ++M+P   +  E  I+P ++ Q+T   
Sbjct: 65  RIIVVLAILRQAIGLQQTPSNQVLLGMSLFLSIFIMAPIYQQVNERAIEPYLSEQVTSME 124

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
           A++   EP   FM +  R KDL  F  +A        +   +     +LIP+F+ SEL+ 
Sbjct: 125 ALELAKEPMKAFMLSQVRIKDLETFAKIAG----YDQLDSPEATPLIVLIPAFVTSELQT 180

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
           +F IGF+  +PFLI+D++VA+++MAMGMMML P  +SLPFK++ FVL+DGWSL++  L K
Sbjct: 181 AFIIGFMFFIPFLIVDLVVASVLMAMGMMMLSPMIVSLPFKIMLFVLVDGWSLVMGTLAK 240

Query: 244 SF 245
           SF
Sbjct: 241 SF 242


>gi|88813211|ref|ZP_01128451.1| flagellar biosynthesis protein [Nitrococcus mobilis Nb-231]
 gi|88789533|gb|EAR20660.1| flagellar biosynthesis protein [Nitrococcus mobilis Nb-231]
          Length = 245

 Score =  193 bits (491), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 98/246 (39%), Positives = 150/246 (60%), Gaps = 6/246 (2%)

Query: 2   IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMV 59
           +R     + L  P +  A+ +  + + + +     TW V  +   + T L++ P  L+M+
Sbjct: 1   MRALLMVVLLWVPGVALAQGTGIEAVTVQSAGDGETWSVSLQILAVMTALTLLPAALLMM 60

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R IIV +ILR  +G  S P N V+I LALF+T +VMSP L +  E+ +QP +N  +
Sbjct: 61  TAFTRIIIVLAILRQAIGTTSTPSNQVLIGLALFLTVFVMSPVLTQINEVALQPYLNEGM 120

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
               A++  A P   FM   TREKD+ LF+++A +      +     + +  L+P+FM S
Sbjct: 121 DAEQAVRAAAGPLRAFMLAQTREKDIGLFLNIADAG----PVASPQEVPFSTLVPAFMTS 176

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL  +F+IGF++ LPFL+ID++VA+ +M+MGM+ML P  ISLPFK++ FVLIDGWSL++ 
Sbjct: 177 ELETAFQIGFIVFLPFLVIDLVVASTLMSMGMLMLSPMLISLPFKIMLFVLIDGWSLIMG 236

Query: 240 NLVKSF 245
            L  SF
Sbjct: 237 TLAGSF 242


>gi|156976196|ref|YP_001447102.1| flagellar biosynthesis protein FliP [Vibrio harveyi ATCC BAA-1116]
 gi|156527790|gb|ABU72875.1| hypothetical protein VIBHAR_04967 [Vibrio harveyi ATCC BAA-1116]
          Length = 255

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 81/245 (33%), Positives = 131/245 (53%), Gaps = 4/245 (1%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           M+      L    P +          ++        +  ++   + T LS  P  ++M T
Sbjct: 14  MVIALLGLLLFALPTMAADNGLTILSVSDGDTQQEYSVKLQILLLMTALSFLPAFILMAT 73

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R I+V +ILR  +G+   PPN V++ +AL +T  +M P      +   +P  N +IT
Sbjct: 74  SFTRIIVVLAILRQALGLQQSPPNRVLVGIALALTLLIMRPVWTDIHDNAFKPYDNGEIT 133

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A     +P   FM   T +  L   + +A+           + I + +++P+F+ISE
Sbjct: 134 LMQAFSVAEKPVRNFMLAQTHQSSLEQMLRIANEPID----QNVEDISFAVVLPAFVISE 189

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +F+IGF++ +PFLIID++VA+++MAMGMMML P  ISLPFK++ FVL+DGW++ V  
Sbjct: 190 LKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKLVVFVLVDGWAMTVGT 249

Query: 241 LVKSF 245
           L  SF
Sbjct: 250 LSASF 254


>gi|256833225|ref|YP_003161952.1| flagellar biosynthetic protein FliP [Jonesia denitrificans DSM
           20603]
 gi|256686756|gb|ACV09649.1| flagellar biosynthetic protein FliP [Jonesia denitrificans DSM
           20603]
          Length = 276

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 88/235 (37%), Positives = 140/235 (59%), Gaps = 4/235 (1%)

Query: 11  LVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
           LV P    A       ++I       T  +      T+LS+AP LL+++T F + ++V S
Sbjct: 45  LVDPADPAAPVDDGISIDIGGGGDGPTSSIVVLLGITLLSVAPSLLLLMTSFTKILVVLS 104

Query: 71  ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
           I R  +G+ SVPPN V+  +ALF++ ++M P L    ++ +QP +   +    A+ + + 
Sbjct: 105 ITRNALGLQSVPPNQVLAGIALFLSIFIMGPVLTSINDIAVQPFLAGDLDFAGALDQGSG 164

Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
           P   FM  +TRE D++L    A + +          +    LIP+F++SELR +F IGF+
Sbjct: 165 PLRDFMLAHTRESDIALITRAAEAENP----ADPQSVPLMTLIPAFLLSELRAAFIIGFV 220

Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           I LPFL+ID++++  +M++GMMMLPP  ISLPFK++ FVL+DGWSL+V  L+ S+
Sbjct: 221 IFLPFLVIDLVISASLMSLGMMMLPPIIISLPFKLLLFVLVDGWSLIVTALIGSY 275


>gi|258511388|ref|YP_003184822.1| flagellar biosynthetic protein FliP [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478114|gb|ACV58433.1| flagellar biosynthetic protein FliP [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 272

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 97/249 (38%), Positives = 151/249 (60%), Gaps = 7/249 (2%)

Query: 4   YCFFALFLVTPELVFAKSSLHD-------VMNIPADLSISTWIVRTFGIFTILSIAPILL 56
           +    +    P  V A++S          V    +  +     V+   + T L++AP  L
Sbjct: 22  WMAVFIMCFHPSFVHAQTSPSAPAIPGVSVSVGGSGPTSVANTVKIVLLLTALTLAPAAL 81

Query: 57  IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
           I++TCF R I+V S +R  + + + PPN V++ LALF+T +VM PTL ++    +QP + 
Sbjct: 82  ILMTCFTRVIVVLSFVRNALSLQTSPPNQVLVGLALFITLFVMQPTLQQANTQALQPYLR 141

Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
            QI++T AI+R   PF VFM   TR +DL LF+   H +         + I    L+P+F
Sbjct: 142 GQISQTAAIERAEAPFKVFMAKQTRAQDLELFLAYRHETLTAEMERHPEAIAMSALVPAF 201

Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
            +SEL+ +F+IGF+I LPFL+ID++V+T +M+MGMMMLPP  ISLPFKV+ FV+++GW L
Sbjct: 202 TLSELQTAFQIGFMIYLPFLVIDLVVSTTLMSMGMMMLPPVMISLPFKVLLFVMVNGWYL 261

Query: 237 LVENLVKSF 245
           +V++L+  +
Sbjct: 262 VVKSLLVGY 270


>gi|163732490|ref|ZP_02139935.1| flagellar biosynthesis protein P [Roseobacter litoralis Och 149]
 gi|161393850|gb|EDQ18174.1| flagellar biosynthesis protein P [Roseobacter litoralis Och 149]
          Length = 243

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 105/245 (42%), Positives = 152/245 (62%), Gaps = 3/245 (1%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           M R    A+FL    +     +    +++  D S+S   ++ F + T+LS+AP L IM+T
Sbjct: 1   MTRVVLLAVFLTGVFIPSVSFAQDLSISLGDDGSLSARTIQLFILITVLSLAPGLAIMIT 60

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
           CFP  + V SILR  +G+   PPN++I+SLALF+T+++M P    + + GIQPL +N I 
Sbjct: 61  CFPFLVTVLSILRQAIGLQQSPPNMLIVSLALFLTYFIMEPVFQAAWQNGIQPLTDNAID 120

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
             TA  R  EPF  FM       D   F  MA       D T        +L+PSF++SE
Sbjct: 121 AETAFVRTLEPFRSFMAARL---DPDTFFAMAELRSETIDATPTAEAPLSVLVPSFLLSE 177

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           + R+F+IGFL+ LPFLIID++VA ++M+MGMMM+PP  +SLPFK+ FFVL DGW+L+  +
Sbjct: 178 ISRAFQIGFLVFLPFLIIDLVVAAVLMSMGMMMVPPVIVSLPFKLAFFVLADGWNLIAGS 237

Query: 241 LVKSF 245
           LV+S+
Sbjct: 238 LVQSY 242


>gi|152997437|ref|YP_001342272.1| flagellar biosynthesis protein FliP [Marinomonas sp. MWYL1]
 gi|150838361|gb|ABR72337.1| flagellar biosynthetic protein FliP [Marinomonas sp. MWYL1]
          Length = 245

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 99/247 (40%), Positives = 156/247 (63%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSIS--TWIVRTFGIFTILSIAPILLIM 58
           MIR+    L LV P   +A+  L  V  +         T  ++   I T L++ P  L+M
Sbjct: 1   MIRFVSL-LLLVFPAFSWAEVGLPAVKVVTNADGSQDYTVSLQILFIMTALTLLPAALMM 59

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R I+V +ILR  +G+   P N ++I +ALF+T ++M+PTLDR  E+ +QP +  +
Sbjct: 60  MTAFTRIIVVLAILRQAIGLQQTPSNQIMIGMALFLTLFIMTPTLDRVNEVALQPYLKEE 119

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           +T   A++  + P   FM   TRE D++LF+ +A    +   I   + + + IL+P+F+ 
Sbjct: 120 MTSIQAVEAASVPVRDFMLAQTREDDIALFVKLAG---KEGTIQSMETLPFTILMPAFVT 176

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF+I +PFLI+DM+VA+++MAMGMMML P  ISLPFK++ FV++DGWS+++
Sbjct: 177 SELKTAFQIGFMIFIPFLIVDMVVASVLMAMGMMMLSPIIISLPFKIMLFVMVDGWSMIM 236

Query: 239 ENLVKSF 245
             L  SF
Sbjct: 237 GTLAASF 243


>gi|157959919|ref|YP_001499953.1| flagellar biosynthesis protein FliP [Shewanella pealeana ATCC
           700345]
 gi|157844919|gb|ABV85418.1| flagellar biosynthetic protein FliP [Shewanella pealeana ATCC
           700345]
          Length = 242

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 89/245 (36%), Positives = 136/245 (55%), Gaps = 4/245 (1%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           M R     L   +             +N  A+    +  +    + T+LS  P +L+M+T
Sbjct: 1   MWRVLLILLLGFSSTAYANDGLTLFTLNDGAESESVSVKLEILALMTVLSFLPAMLMMLT 60

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R I+V  ILR  +G+   PPN V+I +AL MT ++M P  +   E    P     I 
Sbjct: 61  SFTRIIVVLGILRQALGLQQSPPNKVLIGIALVMTIFIMRPVGEEIYEKAFLPYDQGIIE 120

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A++R  +P   FM   TRE DL   + +A            + I + +L+P++++SE
Sbjct: 121 LPEAVERGEKPLRQFMLAQTRETDLEQMLKIADEP----TTLTAEEIPFFVLMPAYVLSE 176

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +F+IGFL+ LPFL+ID++VA+++M+MGMMML P  ISLPFK++ FVL+DGWS+ V  
Sbjct: 177 LKTAFQIGFLLFLPFLVIDLVVASVLMSMGMMMLSPLIISLPFKLMVFVLVDGWSMTVST 236

Query: 241 LVKSF 245
           LV S+
Sbjct: 237 LVASY 241


>gi|114562370|ref|YP_749883.1| flagellar biosynthesis protein FliP [Shewanella frigidimarina NCIMB
           400]
 gi|114333663|gb|ABI71045.1| flagellar biosynthetic protein FliP [Shewanella frigidimarina NCIMB
           400]
          Length = 253

 Score =  193 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 87/241 (36%), Positives = 142/241 (58%), Gaps = 6/241 (2%)

Query: 7   FALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPR 64
               +++P  +     L  +    A    + + V  +   + T +S  P ++IM+T F R
Sbjct: 15  LVALILSPTALAQDGVLPALTVTTAADGTTEYSVTMQILLLMTAMSFIPAMVIMLTSFTR 74

Query: 65  FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
            I+V SILR  +G+   P N V+I ++LFMTF++M+P  D+     ++P +N  +T T A
Sbjct: 75  IIVVLSILRQALGLQQTPSNQVLIGISLFMTFFIMAPVFDKIYAEAVEPYINETMTLTQA 134

Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
                EP   FM +  R  DL  F++++       DI   +     ++IP+F+ SEL+ +
Sbjct: 135 YDVGKEPIKTFMLSQVRTTDLQTFIEISGYK----DIQSPEQAPMSVVIPAFITSELKTA 190

Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           F+IGF++ +PFL++D++VA+I+MAMGMMML P  +SLPFK++ FVL+DGW L++  L  S
Sbjct: 191 FQIGFMLFVPFLVLDLVVASILMAMGMMMLSPMIVSLPFKIMLFVLVDGWGLVMGTLANS 250

Query: 245 F 245
           F
Sbjct: 251 F 251


>gi|114764047|ref|ZP_01443286.1| flagellar biosynthetic protein FliP [Pelagibaca bermudensis
           HTCC2601]
 gi|114543405|gb|EAU46420.1| flagellar biosynthetic protein FliP [Roseovarius sp. HTCC2601]
          Length = 241

 Score =  193 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 103/245 (42%), Positives = 155/245 (63%), Gaps = 5/245 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           M R    AL L+   L  A ++    +++    S++   ++   + T+LS+AP + IMVT
Sbjct: 1   MWRAALSALILI--ALSTAATAQELRLDLGGGGSLTATSLQLIALITLLSLAPGIAIMVT 58

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
           CFP  + V +ILR  +G+   PPN++I+SLALF+T++VM PT   + + G++PL++ +I+
Sbjct: 59  CFPFLVTVLAILRQAVGLQQSPPNMLIVSLALFLTYFVMEPTFTAAWQDGLRPLIDEEIS 118

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
               ++R   PF  FM   T   D + F  MA      +  T        +LIPSFM+SE
Sbjct: 119 VEEGVERTLVPFRGFMAGRT---DANTFSSMADLRPDASGETLRPEAPLSLLIPSFMLSE 175

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           + R+F++GFLI LPFLIID++VA I+M+MGMMM+PP  +SLPFK+ FFV+ DGWSLL   
Sbjct: 176 IARAFQVGFLIFLPFLIIDLVVAAILMSMGMMMVPPAIVSLPFKLAFFVIADGWSLLAGA 235

Query: 241 LVKSF 245
           LV+S+
Sbjct: 236 LVRSY 240


>gi|116514991|ref|YP_802620.1| flagellar biosynthesis protein FliP [Buchnera aphidicola str. Cc
           (Cinara cedri)]
 gi|116256845|gb|ABJ90527.1| type III protein export, membrane component [Buchnera aphidicola
           str. Cc (Cinara cedri)]
          Length = 244

 Score =  193 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 98/217 (45%), Positives = 154/217 (70%), Gaps = 4/217 (1%)

Query: 29  IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
           IP + ++  + V++  I TI+S  P  ++M+TCF R IIV S+LRT +G+   PPN ++I
Sbjct: 30  IPDEFNLLNFSVKSSAILTIISFLPACILMMTCFTRIIIVLSLLRTALGVPYSPPNQILI 89

Query: 89  SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
            L+LF+TF++MSPTL++     + PL  ++I    A++++ +P  +FM   TR+ D+S+F
Sbjct: 90  GLSLFLTFFIMSPTLNKIYNTALIPLYKHEINTEVALKKIIKPIHIFMLKQTRKSDISVF 149

Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
             +A  S       K D+I + IL+PSF+ISEL+ +F+IGF ++LPFLIID+++A+I+M+
Sbjct: 150 WKLAKISFPM----KKDNIPFYILLPSFIISELKTAFQIGFTVLLPFLIIDLVIASILMS 205

Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +G+MM+ P++ISLP K+I FVL DGW LLV +L KSF
Sbjct: 206 LGIMMISPSTISLPLKLILFVLSDGWKLLVVSLAKSF 242


>gi|309388834|gb|ADO76714.1| flagellar biosynthetic protein FliP [Halanaerobium praevalens DSM
           2228]
          Length = 254

 Score =  193 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 93/251 (37%), Positives = 151/251 (60%), Gaps = 10/251 (3%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTW------IVRTFGIFTILSIAPI 54
           ++   F  LF +T  +      + ++     + + +         ++   + T+LS+AP 
Sbjct: 7   LVFLVFLILFSLTITVSAQDFQIPNISLEIGNGTANNQGDDLVLSLQILLLLTVLSLAPA 66

Query: 55  LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
           ++I+ T F R IIVFSIL+  + + ++PPN V+I +A+F+T ++M+P      +  +QP 
Sbjct: 67  IIILFTSFTRIIIVFSILKRALALNNMPPNQVLIGIAIFLTIFIMAPVWQGVNQDALQPY 126

Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
           +   I+   A +    P   FM N   E+ L+LF ++A            D +   ILIP
Sbjct: 127 LAQDISLEQAYENTITPVREFMFNQVDERSLALFTNIAEIERPE----SRDDLPTYILIP 182

Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234
           +F+I+E++ +F+IGFLI +PFL+IDMIVA+I+M+MGMMMLPP  ISLPFK++ FVL DGW
Sbjct: 183 AFLINEIKIAFQIGFLIYIPFLMIDMIVASILMSMGMMMLPPVIISLPFKILLFVLADGW 242

Query: 235 SLLVENLVKSF 245
            +L+ +LVK+F
Sbjct: 243 HILIGSLVKTF 253


>gi|148261126|ref|YP_001235253.1| flagellar biosynthesis protein FliP [Acidiphilium cryptum JF-5]
 gi|326404527|ref|YP_004284609.1| flagellar biosynthetic protein FliP [Acidiphilium multivorum
           AIU301]
 gi|146402807|gb|ABQ31334.1| flagellar biosynthetic protein FliP [Acidiphilium cryptum JF-5]
 gi|325051389|dbj|BAJ81727.1| flagellar biosynthetic protein FliP [Acidiphilium multivorum
           AIU301]
          Length = 253

 Score =  192 bits (489), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 89/215 (41%), Positives = 143/215 (66%), Gaps = 4/215 (1%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
                +  +++   +  ++S+AP LL+M+T F R +IV S+LRT +G  + PPN V+I L
Sbjct: 38  GGAPETAKLIQLIALIGVISLAPSLLVMLTAFTRIVIVLSLLRTALGTQTTPPNSVLIGL 97

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           ALF+T++VM+P   +S   G+ P+    +     ++  A PF  F+ +N R  D+ +F+ 
Sbjct: 98  ALFLTYFVMAPVFSQSWHTGLLPMTQGDVGTLEGLKLAAAPFHTFLADNARPADVRVFLS 157

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           +AH             + +R LIP F++ ELRR FE+GF+I LPF++ID+++++I+M++G
Sbjct: 158 LAHIKPP----ANMQDVPWRALIPGFVVGELRRGFEMGFMIFLPFMVIDIVISSILMSLG 213

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMMLPPT++SLPFK+IFFVL+DGW L+  +LV+SF
Sbjct: 214 MMMLPPTAVSLPFKIIFFVLVDGWQLVCGSLVRSF 248


>gi|325474550|gb|EGC77736.1| flagellar biosynthetic protein fliP [Treponema denticola F0402]
          Length = 259

 Score =  192 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 79/217 (36%), Positives = 122/217 (56%), Gaps = 2/217 (0%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P+      + V+     T++SIAP LL+++T F R  IV   ++  + +  VPP  V+  
Sbjct: 45  PSTNKDVAFSVQLLIFITLISIAPSLLLLMTSFLRLSIVLDFVKRALSLQQVPPTQVLNG 104

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           +A F+T ++M PT  +      +P+   QI    A +   +P   FM    ++    +  
Sbjct: 105 IAFFLTLFIMWPTFTQIYNNAYKPMSEGQIGIEEAYREAEKPMRYFMYKQMQKNPAHIRT 164

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
            MA S     D      +   ILI +F++ EL  +F+IG  + LPF+IIDMIVA+I+M+M
Sbjct: 165 FMAMSKLPKPDTLA--DVPTHILIAAFILHELTIAFQIGIFLYLPFIIIDMIVASILMSM 222

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           GM+MLPP  IS+PFK+I FV++DGW LL   L +SF+
Sbjct: 223 GMIMLPPVQISMPFKLILFVMVDGWGLLFGKLFESFL 259


>gi|83594162|ref|YP_427914.1| flagellar biosynthesis protein FliP [Rhodospirillum rubrum ATCC
           11170]
 gi|83577076|gb|ABC23627.1| Flagellar transport protein FliP [Rhodospirillum rubrum ATCC 11170]
          Length = 264

 Score =  192 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 106/227 (46%), Positives = 154/227 (67%), Gaps = 5/227 (2%)

Query: 19  AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           A +   +V       S +  I++  G+ T+LS+AP LLIMVT F R ++V SILR  +  
Sbjct: 40  AMAQSVNVDLGTGGGSTTARIIQLVGLLTVLSVAPGLLIMVTSFTRIVVVLSILRQALAT 99

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
            S PPN+V++SLALFMTF++M+PT  ++ + G+ PL+  QI+E  A  R   PF  FM  
Sbjct: 100 QSTPPNMVMVSLALFMTFFIMAPTFQQAWDQGLSPLIQEQISEEEAFTRTVAPFRTFMLA 159

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
           + R+KDL LFM             +   +  + LIP+FMISELRR+FEIGFLI LPF++I
Sbjct: 160 HVRDKDLELFMSF-----NKETAAQPSDVSTQALIPAFMISELRRAFEIGFLIFLPFVVI 214

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           DM++A+++M+MGMMMLPP  +++PFK+IFFVL+DGW L++ +L+ S+
Sbjct: 215 DMVIASVLMSMGMMMLPPMMLAMPFKLIFFVLVDGWYLVIGSLLSSY 261


>gi|260429128|ref|ZP_05783105.1| flagellar biosynthetic protein FliP [Citreicella sp. SE45]
 gi|260419751|gb|EEX13004.1| flagellar biosynthetic protein FliP [Citreicella sp. SE45]
          Length = 242

 Score =  192 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 100/245 (40%), Positives = 149/245 (60%), Gaps = 7/245 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           +I    FAL +        + +L    N+    S++   ++   + T+LS+AP + IMVT
Sbjct: 4   LIALTGFALLMQAGPAAAQEITL----NLGEGGSVTAASLQLIALITLLSLAPGIAIMVT 59

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
           CFP  + V SILR  +G+   PPN++I+SLALF+T++VM P    +   G+ PL++ QI 
Sbjct: 60  CFPFLVTVLSILRQAIGLQQSPPNMLIVSLALFLTYFVMEPVFTEAWTNGVAPLLDEQIE 119

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A +R  EPF  FM       D   F ++A           +      +L+PSFM+SE
Sbjct: 120 AREAFERTLEPFRGFMATRI---DPDTFANIADLRPDARGTELDPGAPLSLLVPSFMLSE 176

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           + R+F++GFLI LPFLIID++VA ++M+MGMMM+PP  +SLPFK+ FFV+ DGWSLL  +
Sbjct: 177 IARAFQVGFLIFLPFLIIDLVVAAVLMSMGMMMVPPAIVSLPFKLAFFVIADGWSLLAGS 236

Query: 241 LVKSF 245
           LV+S+
Sbjct: 237 LVRSY 241


>gi|313905144|ref|ZP_07838513.1| flagellar biosynthetic protein FliP [Eubacterium cellulosolvens 6]
 gi|313470047|gb|EFR65380.1| flagellar biosynthetic protein FliP [Eubacterium cellulosolvens 6]
          Length = 224

 Score =  192 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 82/212 (38%), Positives = 131/212 (61%), Gaps = 4/212 (1%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
             +T  +      T++++ P ++IM+T F R II+ S  R  +G+   PPN+V++ ++LF
Sbjct: 16  GGNTPTLSMIYTLTLVALLPSIVIMMTSFVRTIIILSFTRNALGVQQSPPNMVLVGISLF 75

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           +T ++M+PT+ +  E   QP    +IT+  AI+R+  P   FM  NT  K L+ F+ MA 
Sbjct: 76  LTLFIMTPTITQINEEAYQPYQRGEITQEQAIERMQVPMKEFMLKNTETKTLNKFVKMAK 135

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
           +      +         I+ P+FM SEL+R F  GFLI LPFL++D++VAT +M+MGM M
Sbjct: 136 TKK----LKNPKDYPLTIVTPAFMTSELKRGFMAGFLIYLPFLLLDVVVATTLMSMGMAM 191

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +PPT +S+PFK++ FV ++GW LL   ++ SF
Sbjct: 192 MPPTMVSMPFKLLLFVSVNGWELLFSTIISSF 223


>gi|255322335|ref|ZP_05363481.1| flagellar biosynthetic protein FliP [Campylobacter showae RM3277]
 gi|255300708|gb|EET79979.1| flagellar biosynthetic protein FliP [Campylobacter showae RM3277]
          Length = 246

 Score =  192 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 106/249 (42%), Positives = 161/249 (64%), Gaps = 9/249 (3%)

Query: 2   IRYCFFALFLVTPELVFAKS-----SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILL 56
           ++   F LF +   +   +      +++  ++ P   +     +    + T+L++AP L+
Sbjct: 1   MKKLTFLLFFIFAAVAIGEDNVTIPTVNLSLSAPTTPTQLVSSLNVLLVLTVLTLAPSLV 60

Query: 57  IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
            M+T F R IIVFS LR  MG   +PP+ V+ISLA+ +TF++M P   ++ E G+QP ++
Sbjct: 61  FMMTSFLRLIIVFSFLRQAMGTQQMPPSTVLISLAMVLTFFIMEPVGKQAYEAGVQPYLS 120

Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
            QI    A +R  +PF  FM  NTREKDL+LF+ + +  +        D I   +++ +F
Sbjct: 121 EQIGYQEAFERGVKPFREFMIKNTREKDLALFLRIRNMPNP----QSFDDIPLTVVMSAF 176

Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
           MISE++ +FEI FL+ LPFL+IDM+V++++MAMGMMMLPPT ISLPFK++ FVL+DGW+L
Sbjct: 177 MISEMKTAFEIAFLLYLPFLVIDMVVSSVLMAMGMMMLPPTMISLPFKLLIFVLVDGWNL 236

Query: 237 LVENLVKSF 245
           LV NLVKSF
Sbjct: 237 LVMNLVKSF 245


>gi|304392500|ref|ZP_07374440.1| flagellar biosynthetic protein FliP [Ahrensia sp. R2A130]
 gi|303295130|gb|EFL89490.1| flagellar biosynthetic protein FliP [Ahrensia sp. R2A130]
          Length = 259

 Score =  192 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 124/258 (48%), Positives = 168/258 (65%), Gaps = 13/258 (5%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMN--------IPADLSISTWIVRTFGIFTILSIA 52
           MI     AL L  P        +   ++             S+S  I++ FG+ T+LS+A
Sbjct: 1   MIAGLLLALVLTGPAYAQTSPDVLGDLSRLLGSGTEATGSPSVSGQIIQLFGLVTVLSLA 60

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +LI+VT F RFII FSILR G+G+ S P NL++ISL+LFMTF+VMS T   + + G  
Sbjct: 61  PGILIVVTSFTRFIIAFSILRMGLGLQSTPANLILISLSLFMTFHVMSATFQTAWDKGAG 120

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT-----DITKNDHI 167
           PL   +ITE  A+ ++ EPF  FM  N R +D++LF D+ +           +    D +
Sbjct: 121 PLSRGEITEAQAVTQIIEPFRTFMLANVRGEDIALFTDLQNERAVADGVAVPETAAADEV 180

Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227
               L+P+FMISE+RR FEIGFLI+LPFL+ID+IVATIVMAMGMMMLPPT ++LPFK++F
Sbjct: 181 AITALVPAFMISEIRRGFEIGFLILLPFLVIDLIVATIVMAMGMMMLPPTVVALPFKILF 240

Query: 228 FVLIDGWSLLVENLVKSF 245
           FVLIDGW+LLV +L++SF
Sbjct: 241 FVLIDGWNLLVGSLLRSF 258


>gi|312884811|ref|ZP_07744503.1| flagellar biosynthesis protein FliP [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367463|gb|EFP95023.1| flagellar biosynthesis protein FliP [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 251

 Score =  192 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 86/243 (35%), Positives = 135/243 (55%), Gaps = 6/243 (2%)

Query: 5   CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCF 62
               + L+ P L  A  S   + ++    +   + V  +   + T LS  P  ++M T F
Sbjct: 12  IIGGIVLLCPFLAIASDSGLTLFSVTDGETQQEYSVKLQILLLMTALSFLPAFILMATSF 71

Query: 63  PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122
            R I+V +ILR  +G+   PPN V++ +AL +T  +M P      +    P     IT +
Sbjct: 72  TRIIVVLAILRQALGLQQSPPNRVLVGIALALTLLIMRPVWSDIHQNAFLPYEAGTITLS 131

Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182
            A     +P   FM   T++  L   M +A+        T  D I + +++P+F+ISEL+
Sbjct: 132 QAFSIAEKPVRQFMLRQTQQNSLEQMMRIANEPMD----TSLDDISFAVILPAFVISELK 187

Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
            +F+IGF++ +PFLIID++VA+++MAMGMMML P  ISLPFK++ FVL+DGW++ V  L 
Sbjct: 188 TAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIISLPFKLVVFVLVDGWAMTVGTLS 247

Query: 243 KSF 245
            SF
Sbjct: 248 ASF 250


>gi|115377840|ref|ZP_01465028.1| type III secretion apparatus protein, YscR/HrcR family [Stigmatella
           aurantiaca DW4/3-1]
 gi|310820307|ref|YP_003952665.1| type III secretion system inner membrane p family protein
           [Stigmatella aurantiaca DW4/3-1]
 gi|115365172|gb|EAU64219.1| type III secretion apparatus protein, YscR/HrcR family [Stigmatella
           aurantiaca DW4/3-1]
 gi|309393379|gb|ADO70838.1| Type III secretion system inner membrane P family protein
           [Stigmatella aurantiaca DW4/3-1]
          Length = 277

 Score =  192 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 82/264 (31%), Positives = 138/264 (52%), Gaps = 18/264 (6%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHD---------VMNIPADLSISTWIVRTFGIFTILSI 51
           +I + F     + P +  A+              V    ++ S ++  +        LS+
Sbjct: 14  IIPWLFATTVALQPAVALAQRRRGGGDDPIPDSVVQAATSNESFASRPLILILALAALSL 73

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
            P +L+MVT F +  +V SI+R+ +G   +PP  VI  LA+ +T Y+M+P      +   
Sbjct: 74  VPFMLMMVTSFVKISVVLSIVRSALGTQQIPPTQVITGLAVILTVYIMAPVGQEMYKAAK 133

Query: 112 QPL---------MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT 162
             +              T   A  R  EP   F+    + KD +LF  +A    +  D  
Sbjct: 134 VDIWAKGPSLLSSETVGTLLEAADRSKEPLRDFLVKKVKNKDRALFFHLAKKMRKAEDRK 193

Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
                ++ I+IP+F++SEL+ +F+IGFL+ +PF++IDM+VA I++A+GM ML PT+IS+P
Sbjct: 194 DIGDRDFMIIIPAFVVSELKEAFQIGFLLFVPFIVIDMVVANILLALGMHMLSPTTISMP 253

Query: 223 FKVIFFVLIDGWSLLVENLVKSFI 246
           FK++ FVL+DGW L+ + LV  ++
Sbjct: 254 FKLLLFVLVDGWYLIAKGLVVGYL 277


>gi|310659027|ref|YP_003936748.1| flagellar export machinery protein [Clostridium sticklandii DSM
           519]
 gi|308825805|emb|CBH21843.1| component of the flagellar export machinery [Clostridium
           sticklandii]
          Length = 262

 Score =  192 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 85/220 (38%), Positives = 145/220 (65%), Gaps = 1/220 (0%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
           +N   +    +  +    +FT+L++ P +LIM+T F R I++ S L+  MG+    P+ V
Sbjct: 42  INGSENPRDLSNSIEMLMLFTVLTLLPSILIMMTSFTRVIVILSFLKNAMGVQQAIPSQV 101

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           I+ L+LF+TF++M+P         ++P  +N+IT+  A +    P   FM   TREKD+ 
Sbjct: 102 IVGLSLFLTFFIMAPVGSEVYSEALRPYFDNEITQEEAFETAMVPVREFMMKQTREKDIK 161

Query: 147 LFMDMAHSSH-RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
           LFMD++ +    N++    ++I   ++IP+F+ISEL+  F++GFL+ +PF++IDM+VA+ 
Sbjct: 162 LFMDLSKNEELANSEDLVLENIPNTVIIPAFIISELKTGFQVGFLLFIPFIVIDMVVAST 221

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +M+MGMMMLPP  ISLPFK++ FVL+DGW +++++++  F
Sbjct: 222 LMSMGMMMLPPMMISLPFKILLFVLVDGWDMVIKSIIVGF 261


>gi|296282256|ref|ZP_06860254.1| flagellar biosynthesis protein FliP [Citromicrobium bathyomarinum
           JL354]
          Length = 258

 Score =  192 bits (488), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 89/237 (37%), Positives = 144/237 (60%), Gaps = 6/237 (2%)

Query: 12  VTPELVFAKSSLHDVMN--IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVF 69
             P    A  +L         A     +  ++   +  +L+  P +L+M+T F R I+V 
Sbjct: 26  AVPTDSAAAGALDRAFGELGGAGGEPLSLSLQLLLVMGLLTFLPAILLMMTSFTRIIVVL 85

Query: 70  SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129
           +ILR  +G+   PPN V+I ++LF++ ++M+PTLDR     I+P    QI    AI+R  
Sbjct: 86  AILRQALGLQQSPPNQVLIGISLFLSLFIMAPTLDRVNTAAIEPYSAGQINAEVAIERAG 145

Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189
             F  FM   TRE DL +F D+A++            + + IL+P+F+ SEL+ +F+IGF
Sbjct: 146 GEFHKFMIRQTRENDLQMFADIANAPK----FASPQDVPFSILLPAFVTSELKTAFQIGF 201

Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           ++ LPFL+ID++V++++M++GMMM+ P  +SLPFK++ FVL+DGWSLL+ +L  SF+
Sbjct: 202 MLFLPFLVIDLVVSSVLMSLGMMMMSPMLVSLPFKLLLFVLVDGWSLLMGSLASSFV 258


>gi|195953030|ref|YP_002121320.1| flagellar biosynthesis protein FliP [Hydrogenobaculum sp. Y04AAS1]
 gi|195932642|gb|ACG57342.1| flagellar biosynthetic protein FliP [Hydrogenobaculum sp. Y04AAS1]
          Length = 252

 Score =  192 bits (488), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 97/242 (40%), Positives = 153/242 (63%), Gaps = 5/242 (2%)

Query: 8   ALFLVTPELVFAKSSLH----DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
            L L+   L  A++         + +  +    T  +R   I T+LS+AP ++IM T F 
Sbjct: 11  LLLLIFIHLAMAQNENPINVIPGIQVKFNNGNFTEAIRLILILTVLSLAPSIIIMTTSFI 70

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
           R + V S+LR  +G+ +VPPN VI SLALF+TFYVM P +++  +  +QP + ++IT+  
Sbjct: 71  RIVTVLSVLRQAIGLPNVPPNQVITSLALFLTFYVMYPVINQINQNALQPYLQHKITDKQ 130

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
            IQ   EP   FM  NT+      F+ +A +     +I   + +   ++IP+FM+SEL  
Sbjct: 131 FIQNTIEPIKDFMVRNTKVSTERTFL-LASNIPNKDNIKNINDLPLSVVIPAFMVSELSI 189

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
           +F+I FL+ LPFLIIDM+V+ I++AMG++M+PPT ISLPFK++ FVL++GW L++ +LV+
Sbjct: 190 AFQIIFLLYLPFLIIDMVVSAILLAMGIIMIPPTVISLPFKIMLFVLVNGWELVILSLVR 249

Query: 244 SF 245
           S+
Sbjct: 250 SY 251


>gi|237752332|ref|ZP_04582812.1| flagellar biosynthesis protein FliP [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375821|gb|EEO25912.1| flagellar biosynthesis protein FliP [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 249

 Score =  192 bits (488), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 99/246 (40%), Positives = 147/246 (59%), Gaps = 6/246 (2%)

Query: 2   IRYCFFALFLVTPELVFAKS--SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           I      L    P    A +  ++   +  P +       +    I T+L +AP L++M 
Sbjct: 7   ILCIGVILLFGAPPEPQAPTIPTVDLTLRAPTEPGDLVTTLNIVVILTLLVLAPSLILMA 66

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R +IVFS LRT MG    PP  +++S AL +T ++M P      E GI+P +  +I
Sbjct: 67  TSFARILIVFSFLRTAMGTQQSPPTQLLVSFALILTMFIMEPVAKEGYEKGIKPYIAKEI 126

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
               A  R ++PF  FM  NTR KDL+LF  + +  +  T       +   I +P+F+IS
Sbjct: 127 PYDEAFLRASQPFKDFMIRNTRPKDLALFYRIRNLENPQT----AQDVPLSIALPAFIIS 182

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           E++ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPPT ISLPFK++ F+L+DG++LL  
Sbjct: 183 EMKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPTMISLPFKILIFILVDGFNLLTM 242

Query: 240 NLVKSF 245
           NLV+SF
Sbjct: 243 NLVQSF 248


>gi|237653572|ref|YP_002889886.1| flagellar biosynthesis protein FliP [Thauera sp. MZ1T]
 gi|237624819|gb|ACR01509.1| flagellar biosynthetic protein FliP [Thauera sp. MZ1T]
          Length = 257

 Score =  192 bits (488), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 95/227 (41%), Positives = 149/227 (65%), Gaps = 6/227 (2%)

Query: 21  SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
            +L  +   PA    +T+   ++T  + T+LS  P L++M TCF R +IVFS+LR  MG 
Sbjct: 33  QALPALTTSPAAGGGTTYSLTIQTLMLMTLLSFIPALVLMTTCFTRIVIVFSLLRQAMGT 92

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
            + PPN V++ LALF+TF+VM+P  +R       P+   +I    A++R + P   FM  
Sbjct: 93  QTAPPNQVLLGLALFLTFFVMAPVGERVYTEAYLPMSEGRIQFDEALERASVPVKGFMLK 152

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
             RE DL+LF  +A        + K + +  R++IP+F+ SEL+ +F+IGF++ +PF+II
Sbjct: 153 QVREPDLALFAGLAKLP----PVDKAEDLPMRVVIPAFVTSELKTAFQIGFIVFIPFIII 208

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           DM+VA+++M+MGMMM+ P  +SLPFK++ FVL+DGW+LL+ +LV+SF
Sbjct: 209 DMVVASVLMSMGMMMMSPVIVSLPFKIMLFVLVDGWTLLIGSLVQSF 255


>gi|88800467|ref|ZP_01116031.1| flagellar biosynthetic protein FliP [Reinekea sp. MED297]
 gi|88776797|gb|EAR08008.1| flagellar biosynthetic protein FliP [Reinekea sp. MED297]
          Length = 221

 Score =  192 bits (488), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 88/218 (40%), Positives = 134/218 (61%), Gaps = 3/218 (1%)

Query: 28  NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87
                 +  +  ++   I T L+  P  L+M+T F R I+VF+ILR  +G+   P N ++
Sbjct: 5   TTEDGGTRYSVTIQILAIMTALTFIPAALMMMTSFTRIIVVFAILRQAIGLQQTPSNQML 64

Query: 88  ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147
           I LALF+TF++M+P  +      IQP +   I    A+ R  EP   FM   TRE DL L
Sbjct: 65  IGLALFLTFFIMAPVFNEVNANAIQPYIAEDILPLEAVDRAVEPMKRFMLAQTRESDLGL 124

Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
           F+ +A       +      +   IL+P+F+ SEL+ +F+IGFL+ +PFLIID+++A+I+M
Sbjct: 125 FIRLADEEG---NFDDPQQVPLNILMPAFVTSELKTAFQIGFLLFIPFLIIDLVIASILM 181

Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           AMGMMML P  ISLPFK++ FVL+DGW++++ ++  SF
Sbjct: 182 AMGMMMLSPIIISLPFKIMLFVLVDGWAMVMGSVAASF 219


>gi|94495439|ref|ZP_01302019.1| flagellar transport protein [Sphingomonas sp. SKA58]
 gi|94424827|gb|EAT09848.1| flagellar transport protein [Sphingomonas sp. SKA58]
          Length = 255

 Score =  192 bits (488), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 90/221 (40%), Positives = 138/221 (62%), Gaps = 4/221 (1%)

Query: 25  DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
            +  +  D    +  ++   + ++L++ P L++M+T F R IIV S+LR  +G+   PPN
Sbjct: 37  ALGQVSGDGRSLSLSLQILILMSLLTVLPSLVLMMTSFTRIIIVLSLLRQALGLQQTPPN 96

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
            V++ LALF++ +VM P +D        P    QI+   A+ R A+    FM   TRE D
Sbjct: 97  QVLVGLALFLSLFVMRPAIDTINAQAFDPYGKGQISIEEAVGRSAKVLHGFMSKQTRESD 156

Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
           L LF ++A +    T       I + IL+P+F+ SEL+ +F+IGF+I LPFLIID++VA+
Sbjct: 157 LKLFANLAQAPAFRTPA----DIPFSILLPAFVTSELKTAFQIGFMIFLPFLIIDLVVAS 212

Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            +MA+GMMML PT IS+PFK++ FVL+DGW+L + +L  SF
Sbjct: 213 TLMALGMMMLSPTIISMPFKLLLFVLVDGWALTMGSLAGSF 253


>gi|254973925|ref|ZP_05270397.1| flagellar biosynthesis protein FliP [Clostridium difficile
           QCD-66c26]
 gi|255091312|ref|ZP_05320790.1| flagellar biosynthesis protein FliP [Clostridium difficile CIP
           107932]
 gi|255305286|ref|ZP_05349458.1| flagellar biosynthesis protein FliP [Clostridium difficile ATCC
           43255]
 gi|255312969|ref|ZP_05354552.1| flagellar biosynthesis protein FliP [Clostridium difficile
           QCD-76w55]
 gi|255515728|ref|ZP_05383404.1| flagellar biosynthesis protein FliP [Clostridium difficile
           QCD-97b34]
 gi|255648822|ref|ZP_05395724.1| flagellar biosynthesis protein FliP [Clostridium difficile
           QCD-37x79]
 gi|260682041|ref|YP_003213326.1| flagellar biosynthesis protein FliP [Clostridium difficile CD196]
 gi|260685639|ref|YP_003216772.1| flagellar biosynthesis protein FliP [Clostridium difficile R20291]
 gi|306518937|ref|ZP_07405284.1| flagellar biosynthesis protein FliP [Clostridium difficile
           QCD-32g58]
 gi|260208204|emb|CBA60554.1| flagellar biosynthetic protein [Clostridium difficile CD196]
 gi|260211655|emb|CBE01917.1| flagellar biosynthetic protein [Clostridium difficile R20291]
          Length = 221

 Score =  192 bits (488), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 80/220 (36%), Positives = 134/220 (60%), Gaps = 3/220 (1%)

Query: 26  VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
           +  +P      T  ++ F   T L   P ++ M+T F R +I  S L++ +G     P+ 
Sbjct: 4   LSKLPLADVPYTSSMQLFLFLTALMFLPFVMFMMTSFVRIVISLSFLKSALGAQQAIPSQ 63

Query: 86  VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145
           +++ LA+ +T ++M P L+   E  +QP M  ++T   A++    P   F+   TR+ DL
Sbjct: 64  ILVGLAIVLTIFIMRPVLNEINEKALQPYMKEEVTMEEAMKEAEGPIKEFLLKQTRQTDL 123

Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
            LF++ A    +       ++I   +++P+F ISEL+ +F+IGFLI +PFLIID++VA++
Sbjct: 124 DLFVEQAGLKEKK---LTRENIPLSVVVPAFAISELKTAFQIGFLIYIPFLIIDLVVASV 180

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +M+MGM MLPP  ISLPFK++ FV++DGW+L+V+ L+  F
Sbjct: 181 LMSMGMFMLPPVMISLPFKLLLFVMVDGWNLIVKTLILGF 220


>gi|288942627|ref|YP_003444867.1| flagellar biosynthetic protein FliP [Allochromatium vinosum DSM
           180]
 gi|288897999|gb|ADC63835.1| flagellar biosynthetic protein FliP [Allochromatium vinosum DSM
           180]
          Length = 249

 Score =  192 bits (488), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 103/248 (41%), Positives = 148/248 (59%), Gaps = 7/248 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHD---VMNIPADLSISTWIVRTFGIFTILSIAPILLI 57
           + R+      L+ P LV A+    +   V   P    + +  ++   I T++++ P  LI
Sbjct: 4   LARWGLVLAGLLAPGLVLAQIGGLNAVTVTTAPDGGQVYSVTLQILIIMTLMTLLPSALI 63

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           M+T F R IIV  ILR G+G    P N +++ LALF+T +VMSP      +  IQP M  
Sbjct: 64  MMTSFTRIIIVLGILRQGLGTTQTPSNQILLGLALFLTLFVMSPIFQEIYDTAIQPYMEE 123

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
           Q+    A+ +  +P   FM   TRE DL+LF  +             D I   +LIPSF+
Sbjct: 124 QLGTEEALAKAVKPLRTFMLAQTRESDLALFAGIRGIDG----FESPDDIPLTLLIPSFV 179

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
           ISEL+ +F+IGFLI++PFLIID++VA+++M+MGMMML P  ISLPFK++ FVL+DGWSLL
Sbjct: 180 ISELKTAFQIGFLILIPFLIIDLVVASVLMSMGMMMLSPLIISLPFKLMLFVLVDGWSLL 239

Query: 238 VENLVKSF 245
           +  L +SF
Sbjct: 240 LGTLARSF 247


>gi|117928065|ref|YP_872616.1| flagellar biosynthesis protein FliP [Acidothermus cellulolyticus
           11B]
 gi|117648528|gb|ABK52630.1| flagellar biosynthetic protein FliP [Acidothermus cellulolyticus
           11B]
          Length = 318

 Score =  192 bits (487), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 87/234 (37%), Positives = 142/234 (60%), Gaps = 6/234 (2%)

Query: 14  PELVFAKSSLHDVMNIPADL--SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
           P    A +     + +  +      +  +    + T+L++AP  LI+ T F + I+V S+
Sbjct: 88  PTGPAAPNGPGSTVTVSINGVNGKPSQSIVIILLMTVLAVAPAALILTTSFTKVIVVLSL 147

Query: 72  LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
            R  +G+ ++PPN V++ LALF++ +VMSPTL    +  +QP +   IT + A     +P
Sbjct: 148 TRNALGLQTIPPNQVLVGLALFLSLFVMSPTLSAMNKDAVQPYLKGHITASQAYDAGVQP 207

Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
              FM N TR+ DL+L +D +H S           +    L+P+F++SELR +F IGF+I
Sbjct: 208 LKTFMLNQTRKDDLALMIDASHQSRP----ASPKDVSMTTLVPAFVLSELRAAFIIGFVI 263

Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            +PFLIID++V++ +M+MGMMMLPP+ ISLPFK++ F+++DGW L+   L+ S+
Sbjct: 264 FVPFLIIDLVVSSSLMSMGMMMLPPSIISLPFKLLLFIMVDGWGLIARTLLSSY 317


>gi|168334561|ref|ZP_02692717.1| flagellar biosynthetic protein FliP [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 243

 Score =  192 bits (487), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 99/245 (40%), Positives = 149/245 (60%), Gaps = 4/245 (1%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           M +   F  FL+ P  VF+  +L+ +   P   +     ++     T L + P LL++ T
Sbjct: 1   MGKLVLFLCFLLVPTRVFSLDALNSITQSPEFGT----SLQLVFFITFLGLIPTLLLVST 56

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R II    L+T MG   +PPN V+I LALF+TF+VMSP +       I P    QI+
Sbjct: 57  SFTRIIITLYFLKTAMGTQQMPPNQVVIGLALFLTFFVMSPVVSTINTEAIVPYSEGQIS 116

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
           +   +++ A P   FM   TR +D+ LFMD+++      +      + Y I++P+F+ISE
Sbjct: 117 QMEFLEQAAAPIKEFMVMQTRXEDIKLFMDLSNQPAIVDETNILAQLPYHIVVPAFIISE 176

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           +R  F IGFL+ LPF+IIDM+VA+++MAMGMMMLPP  ISLPFK++ F+++DGW L++  
Sbjct: 177 IRAGFVIGFLMYLPFIIIDMVVASVLMAMGMMMLPPAMISLPFKILIFIIVDGWHLIIGE 236

Query: 241 LVKSF 245
           LV++F
Sbjct: 237 LVETF 241


>gi|149189860|ref|ZP_01868140.1| flagellar biosynthesis protein P [Vibrio shilonii AK1]
 gi|148836346|gb|EDL53303.1| flagellar biosynthesis protein P [Vibrio shilonii AK1]
          Length = 261

 Score =  192 bits (487), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 83/245 (33%), Positives = 131/245 (53%), Gaps = 4/245 (1%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           +I      L L     +         +N        +  ++   + T LS  P  ++M T
Sbjct: 18  LIGLVIVMLGLFAHPALADNGLTFLTVNDGQSEQEYSVKLQILLLMTALSFLPAFILMAT 77

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R I+V +ILR  +G+   PPN V+I +AL ++  +M P      E    P    +IT
Sbjct: 78  SFTRIIVVLAILRQALGLQQSPPNRVLIGIALSLSILIMRPVWSDVYEHAFVPYDQGEIT 137

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A     +P   FM   T+   L   + +A+        +K + I + I++P+F+ISE
Sbjct: 138 LMQAFATAEKPVRNFMLAQTQRNSLEQMLRIANEPVD----SKVEDISFAIVLPAFVISE 193

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +F+IGF++ +PFLIID++VA+++MAMGMMML P  +SLPFK++ FVL+DGW++ V  
Sbjct: 194 LKTAFQIGFMLFIPFLIIDLVVASVLMAMGMMMLSPLIVSLPFKLVVFVLVDGWAMTVGT 253

Query: 241 LVKSF 245
           L  SF
Sbjct: 254 LSASF 258


>gi|163794138|ref|ZP_02188111.1| Flagellar biosynthesis pathway [alpha proteobacterium BAL199]
 gi|159180752|gb|EDP65271.1| Flagellar biosynthesis pathway [alpha proteobacterium BAL199]
          Length = 253

 Score =  191 bits (486), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 112/235 (47%), Positives = 157/235 (66%), Gaps = 6/235 (2%)

Query: 11  LVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
            +    V A+S   D+       S +  +++     T+LS+AP +L+MVT F R +IV  
Sbjct: 20  FLWGSPVLAQSLTLDLGE--PGGSTTARLIQLVLTVTLLSLAPGILVMVTSFTRIVIVLG 77

Query: 71  ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
           +LRT +G    PPNLV+ISLALF+T ++M+PTL  +   G+QPL+  +I E  A   V +
Sbjct: 78  LLRTALGTQQSPPNLVMISLALFLTGFIMTPTLKEAWTNGVQPLIEERIDEIEAFDAVVQ 137

Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
           PF  FM    REKDL LF DMA      T +    +   ++LIP+FMISELRR+FEIGFL
Sbjct: 138 PFRGFMLRTVREKDLRLFEDMAQVGPAETGL----NAPLQVLIPAFMISELRRAFEIGFL 193

Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           + LPF+IIDM++A+++M+MGMMM+PP  ISLPFK+IFFVL+DGW ++  +LV+SF
Sbjct: 194 LYLPFVIIDMVIASVLMSMGMMMVPPVMISLPFKLIFFVLVDGWYMIAGSLVRSF 248


>gi|42528260|ref|NP_973358.1| flagellar biosynthesis protein FliP [Treponema denticola ATCC
           35405]
 gi|7387675|sp|Q9X5A6|FLIP_TREDE RecName: Full=Flagellar biosynthetic protein fliP
 gi|4426951|gb|AAD20625.1| flagellar export protein FliP [Treponema denticola]
 gi|41819530|gb|AAS13277.1| flagellar biosynthesis protein FliP [Treponema denticola ATCC
           35405]
          Length = 271

 Score =  191 bits (486), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 79/217 (36%), Positives = 122/217 (56%), Gaps = 2/217 (0%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P+      + V+     T++SIAP LL+++T F R  IV   ++  + +  VPP  V+  
Sbjct: 57  PSTNKDVAFSVQLLIFITLISIAPSLLLLMTSFLRLSIVLDFVKRALSLQQVPPTQVLNG 116

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           +A F+T ++M PT  +      +P+   QI    A +   +P   FM    ++    +  
Sbjct: 117 IAFFLTLFIMWPTFTQIYNNAYKPMSEGQIGIEEAYREAEKPMRYFMYKQMQKNPTHIRT 176

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
            MA S     D      +   ILI +F++ EL  +F+IG  + LPF+IIDMIVA+I+M+M
Sbjct: 177 FMAMSKLPKPDTLA--DVPTHILIAAFILHELTIAFQIGIFLYLPFIIIDMIVASILMSM 234

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           GM+MLPP  IS+PFK+I FV++DGW LL   L +SF+
Sbjct: 235 GMIMLPPVQISMPFKLILFVMVDGWGLLFGKLFESFL 271


>gi|148976243|ref|ZP_01812967.1| putative flagellar assembly protein [Vibrionales bacterium SWAT-3]
 gi|145964337|gb|EDK29592.1| putative flagellar assembly protein [Vibrionales bacterium SWAT-3]
          Length = 246

 Score =  191 bits (486), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 83/246 (33%), Positives = 140/246 (56%), Gaps = 5/246 (2%)

Query: 1   MIRYCFFALFL-VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           M +  FF L L +      A+          +D +  +  ++   + T+LS  P  +IM 
Sbjct: 1   MYKPIFFTLALALFAGASHAEGLTILSETTTSDGTEYSIKLQILILMTLLSFVPAFVIMC 60

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R +IV +ILR  +G+   PPN V++ +AL  T  +M P   +  +    P   +++
Sbjct: 61  TSFTRIVIVLAILRQALGLQQTPPNQVLVGIALIFTLLIMRPVWTKIYDTAYIPYSKDEV 120

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           T   A+    +P   +M + T+ K L     +A      T I  +  I + +L+P++++S
Sbjct: 121 TLMEALATAEKPLRRYMLDQTQRKALEQVSKIAG----ETAIESDQDIPFLVLLPAYLLS 176

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+ +F+IGF++ LPFL+ID++VA+++M+MGMMML P  +SLPFK++ FV++DGW LL+ 
Sbjct: 177 ELKAAFQIGFMLFLPFLVIDLVVASVLMSMGMMMLSPLIVSLPFKLLVFVIVDGWGLLMG 236

Query: 240 NLVKSF 245
           +L  SF
Sbjct: 237 SLANSF 242


>gi|85706151|ref|ZP_01037246.1| flagellar biosynthetic protein FliP [Roseovarius sp. 217]
 gi|85669315|gb|EAQ24181.1| flagellar biosynthetic protein FliP [Roseovarius sp. 217]
          Length = 245

 Score =  191 bits (486), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 98/230 (42%), Positives = 145/230 (63%), Gaps = 3/230 (1%)

Query: 17  VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
             A  +    ++I  D S+S   ++   + T+LS+AP + IMVTCFP  + V SILR G+
Sbjct: 19  APAALAQEISLSIGDDASLSARTIQIIALITVLSLAPGIAIMVTCFPFIVTVLSILRQGI 78

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G+   PPN++I+SLALF+T++VM P    +   GI+PL+  +++   A + V  PF  FM
Sbjct: 79  GLQQSPPNMLIVSLALFLTYFVMEPVFTEAWTNGIEPLLEERLSPERATEMVIAPFRQFM 138

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
                  D   F  MA      +           +LIPSFM+SE+ R+F+IGFL+ LPFL
Sbjct: 139 LGRV---DPETFASMAALRPEASVTVAGSDAPLSVLIPSFMLSEIARAFQIGFLVFLPFL 195

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +ID++VA I+M+MGMMM+PP  +SLPFK+ FFV+ DGW+L+ E+LVK ++
Sbjct: 196 VIDLVVAAILMSMGMMMVPPAIVSLPFKLAFFVIADGWTLIAESLVKGYM 245


>gi|242310594|ref|ZP_04809749.1| flagellar biosynthesis protein FliP [Helicobacter pullorum MIT
           98-5489]
 gi|239522992|gb|EEQ62858.1| flagellar biosynthesis protein FliP [Helicobacter pullorum MIT
           98-5489]
          Length = 251

 Score =  191 bits (486), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 97/247 (39%), Positives = 154/247 (62%), Gaps = 6/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKS--SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIM 58
           ++ +    +F   PEL  + +  ++   +  P +      I+    + T+L +AP L++M
Sbjct: 8   IVVFLPLVIFAAPPELPQSPTIPTIDLTLTAPNEPGDLVAILNIVIVLTLLVLAPSLVLM 67

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
            T F R +IVFS LRT MG    PP  +++S AL +T ++M P +    E G++P +  +
Sbjct: 68  ATSFARILIVFSFLRTAMGTQQSPPTQLLVSFALILTMFIMEPVVKEGYEKGVKPYVAKE 127

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   A  R ++PF  FM  NTR KDL+LF  +    +          + + I +P+F+I
Sbjct: 128 ISYQEAFVRASQPFKDFMIRNTRPKDLALFYRIRGMENP----QNAQEVPFTIALPAFII 183

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SE++ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPPT ISLPFK++ F+L+DG++LL 
Sbjct: 184 SEMKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPTMISLPFKILIFILVDGFNLLT 243

Query: 239 ENLVKSF 245
            NLV+SF
Sbjct: 244 MNLVESF 250


>gi|110677670|ref|YP_680677.1| flagellar biosynthesis protein FliP [Roseobacter denitrificans OCh
           114]
 gi|109453786|gb|ABG29991.1| flagellar biosynthetic protein FliP [Roseobacter denitrificans OCh
           114]
          Length = 245

 Score =  191 bits (486), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 103/245 (42%), Positives = 151/245 (61%), Gaps = 3/245 (1%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           M R    A+ L+         +    +++  D S+S   ++ F + T+LS+AP L IM+T
Sbjct: 3   MTRITLLAVVLIGLFTPSVSLAQDLSISLGDDGSLSARTIQLFILITVLSLAPGLAIMIT 62

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
           CFP  + V SILR  +G+   PPN++I+SLALF+T+++M P    + + GIQPL +N I 
Sbjct: 63  CFPFLVTVLSILRQAIGLQQSPPNMLIVSLALFLTYFIMEPVFQAAWQNGIQPLTDNAID 122

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
             TA  R  EPF +FM       D   F  MA       D          +L+PSF++SE
Sbjct: 123 AETAFVRTLEPFRIFMAGRL---DPDTFFAMAELRSETIDAAPTAEAPLSVLVPSFLLSE 179

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           + R+F+IGFL+ LPFLIID++VA ++M+MGMMM+PP  +SLPFK+ FFVL DGW+L+  +
Sbjct: 180 ISRAFQIGFLVFLPFLIIDLVVAAVLMSMGMMMVPPVIVSLPFKLAFFVLADGWNLIAGS 239

Query: 241 LVKSF 245
           LV+S+
Sbjct: 240 LVQSY 244


>gi|224418310|ref|ZP_03656316.1| flagellar biosynthesis protein FliP [Helicobacter canadensis MIT
           98-5491]
 gi|253827632|ref|ZP_04870517.1| flagellar biosynthesis protein [Helicobacter canadensis MIT
           98-5491]
 gi|313141841|ref|ZP_07804034.1| flagellar biosynthesis protein [Helicobacter canadensis MIT
           98-5491]
 gi|253511038|gb|EES89697.1| flagellar biosynthesis protein [Helicobacter canadensis MIT
           98-5491]
 gi|313130872|gb|EFR48489.1| flagellar biosynthesis protein [Helicobacter canadensis MIT
           98-5491]
          Length = 250

 Score =  191 bits (485), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 96/248 (38%), Positives = 153/248 (61%), Gaps = 7/248 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLI 57
           +   CF  +    P  +    ++  +   ++ P + +    I+    + T+L +AP L++
Sbjct: 6   LWMACFIVVAFSAPPELPQSPTIPTIDLTLSGPNEPADLVAILNIVVVLTLLVLAPSLIL 65

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           M T F R +IVFS LRT +G    PP  +++S AL +T ++M P      E G++P +  
Sbjct: 66  MATSFARLLIVFSFLRTALGTQQSPPTQLLVSFALILTMFIMEPVFKEGYEQGVKPYVAK 125

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
           +I+   A  R ++PF  FM  NTR KDL+LF  +    +  T       + + I +P+F+
Sbjct: 126 EISYQEAFVRASQPFKDFMIRNTRPKDLALFYRIRGMENPQT----AQDVPFTIALPAFI 181

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
           ISE++ +F+IGFL+ LPFL+IDM++++I+MAMGMMMLPPT ISLPFK++ F+L+DG++LL
Sbjct: 182 ISEMKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPTMISLPFKILIFILVDGFNLL 241

Query: 238 VENLVKSF 245
             NLV+SF
Sbjct: 242 TMNLVESF 249


>gi|322378387|ref|ZP_08052842.1| flagellar biosynthesis protein FliP [Helicobacter suis HS1]
 gi|322380261|ref|ZP_08054481.1| flagellar biosynthesis protein FliP [Helicobacter suis HS5]
 gi|321147298|gb|EFX41978.1| flagellar biosynthesis protein FliP [Helicobacter suis HS5]
 gi|321149200|gb|EFX43645.1| flagellar biosynthesis protein FliP [Helicobacter suis HS1]
          Length = 250

 Score =  191 bits (485), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 99/224 (44%), Positives = 149/224 (66%), Gaps = 4/224 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           +++  ++ P   +     +    + T+L +AP L++++T F R I+VFS LRT +G    
Sbjct: 27  TINLSLSAPHTPTQLVTTLNVVLVLTLLVLAPSLVLVMTSFIRLIVVFSFLRTALGTQQT 86

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PP  +++SLAL +TF++M P   +S E  I+P +  +I+ T A ++   PF  FM  NTR
Sbjct: 87  PPTQILVSLALILTFFIMEPAAKQSYESAIKPYLVEKISYTEAFEKGIVPFKEFMLKNTR 146

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           EKDL+LF  +    +          +   IL+P+FMISEL+ +F+IGFL+ LPFL+IDM+
Sbjct: 147 EKDLALFFRIRRLENPK----NASAVPLNILVPAFMISELKTAFQIGFLLYLPFLVIDMV 202

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           V++I+MAMGMMMLPP  ISLPFK++ F+L+DG++LLVENLV SF
Sbjct: 203 VSSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLVENLVASF 246


>gi|223040127|ref|ZP_03610407.1| flagellar biosynthetic protein FliP [Campylobacter rectus RM3267]
 gi|222878604|gb|EEF13705.1| flagellar biosynthetic protein FliP [Campylobacter rectus RM3267]
          Length = 246

 Score =  191 bits (485), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 104/249 (41%), Positives = 160/249 (64%), Gaps = 9/249 (3%)

Query: 2   IRYCFFALFLVTPELVFAKS-----SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILL 56
           ++   F LF +   +   +      +++  ++ P   +     +    + T+L++AP L+
Sbjct: 1   MKKLTFLLFFIFAAVAIGEDNVTIPTVNLSLSAPTTPTQLVSSLNVLLVLTVLTLAPSLV 60

Query: 57  IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
            M+T F R IIVFS LR  MG   +PP+ V+ISLA+ +TF++M P   ++ E G++P + 
Sbjct: 61  FMMTSFLRLIIVFSFLRQAMGTQQMPPSTVLISLAMVLTFFIMEPVGKQAYEAGVRPYLG 120

Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
            QI    A +R  +PF  FM  NTREKDL+LF+ + +  +        D I   +++ +F
Sbjct: 121 EQIGYQEAFERGVKPFREFMIKNTREKDLALFLRIRNMPNP----QSFDDIPLTVVMSAF 176

Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
           MISE++ +FEI FL+ LPFL+IDM+V++++MAMGMMMLPPT ISLPFK++ F+L+DGW+L
Sbjct: 177 MISEMKTAFEIAFLLYLPFLVIDMVVSSVLMAMGMMMLPPTMISLPFKLLIFILVDGWNL 236

Query: 237 LVENLVKSF 245
           LV NLVKSF
Sbjct: 237 LVMNLVKSF 245


>gi|296135631|ref|YP_003642873.1| flagellar biosynthetic protein FliP [Thiomonas intermedia K12]
 gi|295795753|gb|ADG30543.1| flagellar biosynthetic protein FliP [Thiomonas intermedia K12]
          Length = 255

 Score =  191 bits (485), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 96/231 (41%), Positives = 151/231 (65%), Gaps = 6/231 (2%)

Query: 18  FAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTG 75
            +   L    + PA    + +   V+T    T L   P +L+M+T F R IIV S+L+  
Sbjct: 28  ASAQVLPAFTSSPAAGGGTEYSLSVQTLLFMTALVFLPAMLLMMTAFTRIIIVLSLLKQA 87

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVF 135
           +G  +VPP+ VI+ L+LF+TF+VMSP L++  ++ I+PLM+NQIT   A+Q  A P   F
Sbjct: 88  LGTTTVPPSQVIVGLSLFLTFFVMSPVLNQVNDVAIKPLMDNQITMQQALQTGAAPLRTF 147

Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195
           M   TR++DL+LF+ ++        + K +     +LIP+F+ SEL+ +F+IGF+I +PF
Sbjct: 148 MLGQTRQEDLALFVKLSGHK----ALDKPEDTPMTLLIPAFVTSELKTAFQIGFVIFIPF 203

Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           LIIDM+VA ++M+MGMMML P ++S P K++ FVL+ GW L++ +L++SF+
Sbjct: 204 LIIDMVVAAVLMSMGMMMLSPVTVSFPLKLMLFVLVGGWELVIGSLMQSFV 254


>gi|296273474|ref|YP_003656105.1| flagellar biosynthetic protein FliP [Arcobacter nitrofigilis DSM
           7299]
 gi|296097648|gb|ADG93598.1| flagellar biosynthetic protein FliP [Arcobacter nitrofigilis DSM
           7299]
          Length = 242

 Score =  191 bits (485), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 108/244 (44%), Positives = 151/244 (61%), Gaps = 8/244 (3%)

Query: 5   CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIA---PILLIMVTC 61
              ALF+ +  L FA  +L  +    A +      V+T  I  IL +    P LL+MVT 
Sbjct: 3   IILALFIFSISL-FAADNLPVINLSIASIDQPAQFVKTINIAIILILLAMAPTLLLMVTS 61

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F R IIV S+LR  MG+   PPN ++IS+AL +T ++M P    S   GI+P M  +I  
Sbjct: 62  FTRLIIVLSLLRQAMGLQQAPPNQIVISMALILTIFIMEPYAKTSYNEGIKPYMEEKIGY 121

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
             A  +  +PF  FM  NTRE+D++LF  +    +        D +   +L+P+F++SEL
Sbjct: 122 EEAFAKSVKPFKEFMIKNTREEDIALFYRIKKEKNPK----NIDDVALTLLMPAFIVSEL 177

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
           R +FEIGFLI LPFL+ID+IVA+I+M++GMMMLPP  ISLP KVIFF++IDGW L++ NL
Sbjct: 178 RTAFEIGFLIFLPFLVIDIIVASILMSLGMMMLPPVMISLPIKVIFFIIIDGWQLIIGNL 237

Query: 242 VKSF 245
            +SF
Sbjct: 238 AQSF 241


>gi|325981181|ref|YP_004293583.1| flagellar biosynthetic protein FliP [Nitrosomonas sp. AL212]
 gi|325530700|gb|ADZ25421.1| flagellar biosynthetic protein FliP [Nitrosomonas sp. AL212]
          Length = 248

 Score =  191 bits (485), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 97/241 (40%), Positives = 151/241 (62%), Gaps = 5/241 (2%)

Query: 6   FFALFLVTPELVFAKSSLHDVMNIPADLS-ISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
           F A F+  P                AD S   T  ++T  + T L+  P L++M++ F R
Sbjct: 10  FLAGFIALPAFAQQSGFPAFTSTANADGSATYTLSLQTLLLLTSLTFLPALVLMMSSFTR 69

Query: 65  FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
            IIV S+LR  +G  S PPN V++ LALF+TF++MSP +DR       P   ++I+   A
Sbjct: 70  IIIVLSLLRMALGTQSSPPNQVLLGLALFLTFFIMSPVIDRVYSEAYLPFSEDKISIMEA 129

Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
            ++ + P   FM + TRE DL+LF+ ++ S     ++   D +  +IL+P+++ SEL+ +
Sbjct: 130 AEKASVPLKSFMLHQTRETDLALFVQISES----EELESRDQVPLKILVPAYITSELKTA 185

Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           F+IGF+I +PFLIID++V++++MAMGMMML P  ISLPFK++ FVL+DGW L++ +L +S
Sbjct: 186 FQIGFVIFIPFLIIDLVVSSVLMAMGMMMLSPMIISLPFKLMLFVLVDGWHLIIGSLTQS 245

Query: 245 F 245
           F
Sbjct: 246 F 246


>gi|51894127|ref|YP_076818.1| flagellar biosynthesis protein FliP [Symbiobacterium thermophilum
           IAM 14863]
 gi|51857816|dbj|BAD41974.1| flagellar biosynthesis protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 253

 Score =  191 bits (485), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 88/194 (45%), Positives = 130/194 (67%), Gaps = 4/194 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP ++I+ T F R I+VF  +RT +G+   PPN V+I LALF+T  VM PT     +  +
Sbjct: 62  APAIIILCTSFTRIIVVFGFIRTALGLQQTPPNQVLIGLALFLTAAVMMPTFSEINQTAV 121

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           QP +  +I +  AI+R A P   FM   TRE DL L ++++            + + +  
Sbjct: 122 QPYLAGEIDQVEAIERGALPLKAFMLRQTREADLGLMLEVSGQPAPE----GPEDVSFLT 177

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           ++P+F +SEL+ +F +GFLI LPF+IID+I A+++M++GMMM+PPT ISLPFKV+ FVL+
Sbjct: 178 VVPAFALSELKTAFTMGFLIYLPFIIIDLITASLMMSLGMMMVPPTLISLPFKVLLFVLV 237

Query: 232 DGWSLLVENLVKSF 245
           DGW L+VE+LV+SF
Sbjct: 238 DGWHLVVESLVRSF 251


>gi|146277690|ref|YP_001167849.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555931|gb|ABP70544.1| flagellar biosynthetic protein FliP [Rhodobacter sphaeroides ATCC
           17025]
          Length = 246

 Score =  190 bits (484), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 90/244 (36%), Positives = 143/244 (58%), Gaps = 4/244 (1%)

Query: 2   IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
           +R       L+     FA+      +      +  +  ++   + T L++ P L++ ++ 
Sbjct: 4   LRVTALVAALLLSGPAFAQGLPALTITESTGGTSYSLSLQILALMTALTVLPSLVLGMSA 63

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F R IIV SILR  +G    PPN V+I+LALF+TF+VM PTL       + P ++ ++  
Sbjct: 64  FTRIIIVLSILRQALGTQQTPPNQVLIALALFLTFFVMQPTLGTLYAEALSPFLDGRLAA 123

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
             AI+R       F+  NTR+ DL +F D+A +            + +  L+P+FM SEL
Sbjct: 124 EPAIERGGAIMKEFLIANTRQNDLLMFSDLAGAG----PYEDPRDVPFSTLLPAFMTSEL 179

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
           + +F+IGFL+ LPFL+IDM++A+I+MA+GMMML P  +SLPFK++ FVL+DGW+L V +L
Sbjct: 180 KTAFQIGFLLFLPFLVIDMVIASILMALGMMMLSPMLVSLPFKLLLFVLVDGWALTVGSL 239

Query: 242 VKSF 245
             ++
Sbjct: 240 AATY 243


>gi|289829471|ref|ZP_06547083.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 186

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 87/188 (46%), Positives = 131/188 (69%), Gaps = 4/188 (2%)

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           M+T F R IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    
Sbjct: 1   MMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQ 60

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
           +I+   A+ + A+P   FM   TRE DL+LF  +A+S      +   + +  RIL+P+++
Sbjct: 61  KISMQEALDKGAQPLRAFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYV 116

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
            SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LL
Sbjct: 117 TSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLL 176

Query: 238 VENLVKSF 245
           V +L +SF
Sbjct: 177 VGSLAQSF 184


>gi|119385379|ref|YP_916435.1| flagellar biosynthesis protein FliP [Paracoccus denitrificans
           PD1222]
 gi|119375146|gb|ABL70739.1| flagellar biosynthetic protein FliP [Paracoccus denitrificans
           PD1222]
          Length = 241

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 95/247 (38%), Positives = 148/247 (59%), Gaps = 9/247 (3%)

Query: 1   MIRYCFFALFLVTPELVFAKSS--LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIM 58
           MIR       L+ P+   A+    +           +    +    + T LS+AP + IM
Sbjct: 1   MIRLVLVLAVLLLPQPGSAQDLPLIDAAGLDAVAGGVGRHAITLLAVMTALSLAPGIAIM 60

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           VTCFP  + V SILR  +G+   PPN++I+SLA+F+T++VM+P L  + ++   PL + +
Sbjct: 61  VTCFPFIVTVLSILRQSLGLQQSPPNMLIVSLAMFLTWFVMNPVLTEAWDVAGAPLRDGR 120

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           IT   A +R   PF  FM + T  + L+   ++A       D          +LIP+FMI
Sbjct: 121 ITVEQAFERGIVPFRGFMEHRTDPEMLATLAEIAPDPEAAPDR-------LSVLIPAFMI 173

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SE++R+FEIGFL+ LPFLIID++V+ ++M+MGMMM+PP  ++LPFK+ FFV++DGW ++ 
Sbjct: 174 SEIQRAFEIGFLVALPFLIIDLVVSAVLMSMGMMMVPPVVVALPFKLAFFVVVDGWGMIA 233

Query: 239 ENLVKSF 245
             LV+S+
Sbjct: 234 AALVRSY 240


>gi|94500290|ref|ZP_01306823.1| Flagellar transport protein FliP [Oceanobacter sp. RED65]
 gi|94427589|gb|EAT12566.1| Flagellar transport protein FliP [Oceanobacter sp. RED65]
          Length = 251

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 94/248 (37%), Positives = 146/248 (58%), Gaps = 8/248 (3%)

Query: 2   IRYCFFALFLVTPELVFAKSSLHDVMNI----PADLSISTWIVRTFGIFTILSIAPILLI 57
           IR  + A  L+ P L +A+++           P      +  ++   I TIL++ P L+I
Sbjct: 6   IRLVWVAALLLLPSLGWAENTFDIPAITYEEDPNGNGRYSVTIQILAIMTILTVLPSLVI 65

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           M+T F R I+VF+ILR  +G+   P N +++ L LF+T ++M P  +   E  IQP +  
Sbjct: 66  MMTSFTRIIVVFAILRQALGLQQTPSNQILLGLTLFLTLFIMMPIFNVINETAIQPYLEE 125

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
           +I    A+     P   FM    RE DL++F+ ++  +   T +         ILIP+F+
Sbjct: 126 KILPKEALDLAIIPIKEFMLAQVRETDLNMFVRLSGETGIQTPM----DTPLHILIPAFI 181

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
            SEL+ +F+IGF+I +PFLIID++VA+I+MAMGMMML P  ISLPFK++ FVL+DGW ++
Sbjct: 182 TSELKTAFQIGFMIFIPFLIIDLVVASILMAMGMMMLSPIIISLPFKIMLFVLVDGWVMI 241

Query: 238 VENLVKSF 245
           +  L  S+
Sbjct: 242 IGTLAASY 249


>gi|146282916|ref|YP_001173069.1| flagellar biosynthetic protein FliP [Pseudomonas stutzeri A1501]
 gi|145571121|gb|ABP80227.1| flagellar biosynthetic protein FliP [Pseudomonas stutzeri A1501]
          Length = 199

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 93/200 (46%), Positives = 130/200 (65%), Gaps = 4/200 (2%)

Query: 46  FTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDR 105
            T LS  P  ++++T F R IIVFSILR  +G+   P N ++I L LF+T ++M+P  DR
Sbjct: 1   MTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQQTPSNQILIGLTLFLTLFIMAPVFDR 60

Query: 106 SIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165
             +  +QP ++ QI    AI R   P   FM   TRE DL LF+ ++      TDI   +
Sbjct: 61  INQDALQPYLSEQIPAQEAIARAEVPLKNFMLAQTRESDLELFVRLSQR----TDIASPE 116

Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225
                IL+P+F+ SEL+ +F+IGF+I +PFLIIDM+VA+++MAMGMMML P  ISLPFK+
Sbjct: 117 AAPMTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKI 176

Query: 226 IFFVLIDGWSLLVENLVKSF 245
           + FVL+DGW L++  L  SF
Sbjct: 177 MLFVLVDGWGLIIGTLAGSF 196


>gi|291562035|emb|CBL40851.1| flagellar biosynthetic protein FliP [butyrate-producing bacterium
           SS3/4]
          Length = 218

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 79/212 (37%), Positives = 131/212 (61%), Gaps = 4/212 (1%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
             +   +    + T  ++ P +++M++ F R II+ S  R  MG+   PPN+V+  +ALF
Sbjct: 10  GGNVPALDIIMLLTFAALLPSIVVMMSSFMRIIIILSFTRNAMGVQQTPPNMVLTGMALF 69

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           ++ Y+MSP + +   +  +P  N +IT+  A+ R+A+P   FM  NT +  L  F+ M+ 
Sbjct: 70  LSLYIMSPVIGQINTVAYEPYKNGEITQQEAVSRMADPLKQFMLRNTEKDTLDHFVQMSK 129

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
              +             +++P+FM SEL++ F  GFLI LPFL+ID++V+T +M+MGM+M
Sbjct: 130 QEVKK----DVKEYPLTVVVPAFMTSELKKGFLAGFLIYLPFLLIDIVVSTTLMSMGMVM 185

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LPPT +SLPFK++ F+ ++GW LL  +LV+SF
Sbjct: 186 LPPTMVSLPFKLLLFITVNGWELLFSSLVQSF 217


>gi|227873535|ref|ZP_03991780.1| flagellar biosynthesis protein FliP [Oribacterium sinus F0268]
 gi|227840625|gb|EEJ51010.1| flagellar biosynthesis protein FliP [Oribacterium sinus F0268]
          Length = 218

 Score =  190 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 79/217 (36%), Positives = 127/217 (58%), Gaps = 4/217 (1%)

Query: 29  IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
           +      S   +    + T++++ P ++IM+T F R II+ S  R  MG+   PPN+V+ 
Sbjct: 5   LSGLNGGSVPTLELIYLLTLVALLPSIVIMMTSFTRIIIILSFTRNAMGVQQTPPNMVLA 64

Query: 89  SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
            +A F+T Y+MSPTL++      +P     +T+  A+  + +    FM  NT +  L  F
Sbjct: 65  GIAFFLTLYIMSPTLNKINTEAYEPYKKGTVTQEEALNIMGKDMKEFMLRNTEKATLDRF 124

Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
           + M+    +             ++ P+FM SEL+R F  GFLI LPFL+ID++V+T +MA
Sbjct: 125 VSMSKVELQKDPK----DYPLTVVTPAFMTSELKRGFTAGFLIYLPFLLIDVVVSTTLMA 180

Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MGM+MLPP  +S+PFK++ F+ +DGW+LL  ++V SF
Sbjct: 181 MGMVMLPPAMVSMPFKLLLFITVDGWNLLFSSVVNSF 217


>gi|220917690|ref|YP_002492994.1| flagellar biosynthetic protein FliP [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219955544|gb|ACL65928.1| flagellar biosynthetic protein FliP [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 236

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 93/240 (38%), Positives = 140/240 (58%), Gaps = 5/240 (2%)

Query: 6   FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65
             AL L    L  A  +    + I  +   S   V+ F + T LS A  LL+ VT F R 
Sbjct: 1   MSALGLPLAALSVASPAAEGALQISVNGGGSA-PVKLFLVLTALSFATALLVSVTSFTRI 59

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
           +IV S LR  +G   VPPN V+I LAL ++ +VMSPT  R     + P ++++I +  A+
Sbjct: 60  VIVLSFLRQALGTPQVPPNQVLIGLALVLSCFVMSPTATRVYGDALGPYLDDRIGQAEAL 119

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
           +R + P   FM   TR++DL+LF +++ +          D I   I +P+FMISEL  +F
Sbjct: 120 ERASGPVREFMLRQTRDQDLALFYEISATPRP----ASGDAIPMSIAVPAFMISELTTAF 175

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            +G  + +P L++D++V+ I+M+MGMMM+PPT I+LP K+  FV+ DGW L+V  L +SF
Sbjct: 176 RMGLFLYVPLLLVDLLVSAILMSMGMMMVPPTLIALPVKIGLFVMADGWRLVVGALARSF 235


>gi|296124299|ref|YP_003632077.1| flagellar biosynthetic protein FliP [Planctomyces limnophilus DSM
           3776]
 gi|296016639|gb|ADG69878.1| flagellar biosynthetic protein FliP [Planctomyces limnophilus DSM
           3776]
          Length = 339

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 91/250 (36%), Positives = 134/250 (53%), Gaps = 15/250 (6%)

Query: 10  FLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVF 69
               P L           +     S  +  ++   + T+L++AP +L+M TCF RF+IV 
Sbjct: 85  LAFPPGLAAPALPTGLDASNLTSRSGLSNTLKIMFLLTVLTLAPSILMMTTCFIRFVIVL 144

Query: 70  SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM-----NNQITETTA 124
            +LR  +G   +PPN VI SL LF+TF VM+P    + E GI+P          I E TA
Sbjct: 145 GLLRQALGTQQLPPNQVITSLCLFLTFLVMAPIWQEAYEAGIRPYTAPRAGEAAIDEWTA 204

Query: 125 IQRVAEPFWVFMRNNTRE----KDLSLFMDMAHSSHRNT------DITKNDHIEYRILIP 174
             R   P   FM            + +F+D       +       + T  + +    L+P
Sbjct: 205 FNRTLVPIRRFMAEQIDRTGSSDSVWMFIDFMRPPQDSPALSTWKEPTTYEDVPLVALLP 264

Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234
           ++++SEL+ SF I F I LPFLIIDM++++I+++MGMMMLPP  ISLPFK++ FV+IDGW
Sbjct: 265 AYVLSELKVSFLIAFQIYLPFLIIDMVISSILISMGMMMLPPVLISLPFKLLLFVMIDGW 324

Query: 235 SLLVENLVKS 244
            L V  L++S
Sbjct: 325 FLTVGMLLES 334


>gi|254487121|ref|ZP_05100326.1| flagellar biosynthetic protein FliP [Roseobacter sp. GAI101]
 gi|214043990|gb|EEB84628.1| flagellar biosynthetic protein FliP [Roseobacter sp. GAI101]
          Length = 245

 Score =  190 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 100/240 (41%), Positives = 150/240 (62%), Gaps = 6/240 (2%)

Query: 6   FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65
             AL +  P    A+      +++    ++S   ++ F + T+LS+AP + +MVTCFP  
Sbjct: 11  LAALLVFLPGFPLAQEV---SIDLGDQGALSARTIQLFVLITVLSLAPGIAVMVTCFPFL 67

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
           + V SILR  +G+   PPN++I+SLALF+T+++M P    + E G++PL N QI   TA 
Sbjct: 68  VTVLSILRQAIGLQQSPPNMLIVSLALFLTYFIMEPVFTAAWENGLEPLANEQIDVETAF 127

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
            +  EPF  FM       D + F  MA        +  +      +L+PSFM+SE+ R+F
Sbjct: 128 AQAMEPFRQFMVGRL---DPATFTAMAELRPDTAGLALDLDAPLSVLVPSFMLSEITRAF 184

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +IGFL+ LPFLIID++VA I+M+MGMMM+PP  +SLPFK+ FFV+ DGWSL+  +LV+S+
Sbjct: 185 QIGFLVYLPFLIIDLVVAAILMSMGMMMVPPAVVSLPFKLAFFVVADGWSLIAGSLVRSY 244


>gi|220934504|ref|YP_002513403.1| flagellar biosynthetic protein FliP [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995814|gb|ACL72416.1| flagellar biosynthetic protein FliP [Thioalkalivibrio sp. HL-EbGR7]
          Length = 247

 Score =  190 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 92/245 (37%), Positives = 146/245 (59%), Gaps = 4/245 (1%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           +      AL+L+          + +V   P      +  ++   + T+LS+ P  LIM+T
Sbjct: 5   LSLLGVAALWLLAGPAAAQGLDVLNVTTAPDGAQTYSVTLQILILMTLLSLLPSALIMMT 64

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R IIV +ILR G+G    P N ++I LALF+T +VM+P  DR     IQP M   ++
Sbjct: 65  SFTRIIIVLAILRQGLGTTQTPSNQILIGLALFLTLFVMTPVFDRIHVEAIQPYMEESLS 124

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A+Q  ++P   FM   TRE DL++F  ++            + + + +L+ SF+ SE
Sbjct: 125 MEEAVQTASQPIRQFMLAQTRESDLAMFARISGREG----FESPEDVPFTLLMASFLTSE 180

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +F+IGF++++PFLIID++VA+++M+MGM+ML P  ISLPFK++ FVL+DGW+L++  
Sbjct: 181 LKTAFQIGFMLLIPFLIIDLVVASVLMSMGMVMLSPLIISLPFKIMLFVLVDGWALIMGT 240

Query: 241 LVKSF 245
           L  SF
Sbjct: 241 LAASF 245


>gi|71282453|ref|YP_268254.1| flagellar biosynthesis protein FliP [Colwellia psychrerythraea 34H]
 gi|71148193|gb|AAZ28666.1| flagellar biosynthetic protein FliP [Colwellia psychrerythraea 34H]
          Length = 252

 Score =  190 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 87/224 (38%), Positives = 131/224 (58%), Gaps = 4/224 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           S   +   P      +  ++     T LS  P  +IM+T F R ++V +ILR   G+   
Sbjct: 29  SALTLTTNPDGSQEYSVNLQILIFMTALSFIPAAVIMMTSFTRIVVVMAILRQAFGLQQT 88

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           P N VII L LFMT ++M+P  ++     IQP ++  +T T AI     P   FM   TR
Sbjct: 89  PSNQVIIGLTLFMTLFIMTPVYNQIDRTAIQPYLSENLTSTEAINLGKIPLRAFMLEQTR 148

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
            KDL     MA        + +   +   ++IP+F+ISEL+ +F+IGF++ +PFLIID++
Sbjct: 149 VKDLDTLAAMAGI----DAVDEPTDLPMTVIIPAFIISELKTAFQIGFILFIPFLIIDLV 204

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           VA+I+MAMGMMML P  +SLPFK++ FVL+DGW+L++  +  S+
Sbjct: 205 VASILMAMGMMMLSPMIVSLPFKLMLFVLVDGWNLVIGTIATSY 248


>gi|326386956|ref|ZP_08208569.1| flagellar biosynthesis protein FliP [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208565|gb|EGD59369.1| flagellar biosynthesis protein FliP [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 300

 Score =  190 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 86/194 (44%), Positives = 128/194 (65%), Gaps = 4/194 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P L++M+T F R +IV ++LR  +G+   PPN V+I L+LF++ +VM PTLDR     IQ
Sbjct: 111 PSLVLMMTSFTRILIVLALLRQALGLQQSPPNPVLIGLSLFLSLFVMGPTLDRVNANAIQ 170

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P     I    A       F  FM   TRE DL +F DMAH+            + + IL
Sbjct: 171 PYSAGTINAEQAFVNGGREFHAFMIRQTREHDLLMFADMAHAPR----FASPADVPWTIL 226

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           +P+F+ SEL+ +F+IGF++ LPFL+ID++V++++M++GMMM+ PT ISLPFK++ FVL+D
Sbjct: 227 LPAFVTSELKTAFQIGFMLFLPFLVIDLVVSSVLMSLGMMMMSPTVISLPFKLLLFVLVD 286

Query: 233 GWSLLVENLVKSFI 246
           GW+LL+ +L  SF+
Sbjct: 287 GWALLMGSLASSFV 300


>gi|289208347|ref|YP_003460413.1| flagellar biosynthetic protein FliP [Thioalkalivibrio sp. K90mix]
 gi|288943978|gb|ADC71677.1| flagellar biosynthetic protein FliP [Thioalkalivibrio sp. K90mix]
          Length = 256

 Score =  190 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 82/189 (43%), Positives = 123/189 (65%), Gaps = 4/189 (2%)

Query: 57  IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
           IM+T F R ++V +ILR G+G    P N ++I LA F+T +VM+P  D   E  + P MN
Sbjct: 70  IMMTAFTRILVVLAILRQGLGTTQTPSNQILIGLAFFLTLFVMAPVFDEIYETAVVPYMN 129

Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
            ++     +Q   +P   FM  +TRE D+ +F ++             D I  R+L+P+F
Sbjct: 130 EEMGTEEVLQAGVQPLREFMLAHTRESDIRMFAEINGIDG----FDDADDIPLRLLVPAF 185

Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
           + SEL+ +F+IGFLI++PFLIID++VA+++M+MGM+ML P  ISLPFKV+ FVL+DGW+L
Sbjct: 186 VTSELKTAFQIGFLILIPFLIIDLVVASVLMSMGMVMLSPLIISLPFKVMLFVLVDGWAL 245

Query: 237 LVENLVKSF 245
           ++  L  SF
Sbjct: 246 MMNTLATSF 254


>gi|294084391|ref|YP_003551149.1| flagellar biosynthetic protein FliP [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663964|gb|ADE39065.1| flagellar biosynthetic protein FliP [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 261

 Score =  190 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 85/221 (38%), Positives = 138/221 (62%), Gaps = 4/221 (1%)

Query: 25  DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
           +V       S  +  ++   + T L++ P L++ +T F R IIV SILR  MG    PPN
Sbjct: 42  NVTGSEDGTSTYSLSLQILALMTALTVLPSLVLGMTSFTRIIIVLSILRQAMGTQQTPPN 101

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
            V++++ALF+TF++M+PT  +  +M + P M   +   TA+         F+  NTR  D
Sbjct: 102 QVLVAIALFLTFFIMAPTFTQLNDMALSPYMEGTMPMETALSDGTNIMKDFLVQNTRVTD 161

Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
           L +F +MA     +T       +   +L+P+F+ SEL+ +F+IGFL+ LPFL+IDM++A+
Sbjct: 162 LVMFTEMAG----DTTYEDPKDVPLTVLLPAFITSELKTAFQIGFLLFLPFLVIDMVIAS 217

Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           I+M++GMMML P  ++LPFK++ FVL+DGW++ V +LV ++
Sbjct: 218 ILMSLGMMMLSPMLVALPFKLLLFVLVDGWAMTVGSLVATY 258


>gi|254457934|ref|ZP_05071361.1| flagellar biosynthetic protein FliP [Campylobacterales bacterium GD
           1]
 gi|207085327|gb|EDZ62612.1| flagellar biosynthetic protein FliP [Campylobacterales bacterium GD
           1]
          Length = 244

 Score =  190 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 100/246 (40%), Positives = 153/246 (62%), Gaps = 6/246 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKS--SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIM 58
           M+R     L  V+     A +  +++  ++ P         +    + T+L +AP ++++
Sbjct: 1   MLRLLIVILAFVSILGAEAVTIPTMNFALSAPDTPQQLVSSLNVLVVLTLLFLAPSMVLV 60

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F RF+IVF  LR  +G   VPP  +++ LA+ +TF+VM P   ++ + GI+P +  +
Sbjct: 61  MTTFTRFVIVFGFLRQALGTQQVPPTQLLVMLAMILTFFVMEPIGQKAYDNGIKPYIEEK 120

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I    A ++   PF  FM  NTREKDL+LF  +    +  T       +   ++IPSF+I
Sbjct: 121 IGYEEAFEKSTLPFKNFMIRNTREKDLALFFRIRGMENPAT----VSDVPLSVIIPSFVI 176

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +FEIGFL+ LPFL+IDM+VA+I+M+MGMMMLPP  ISLPFK++ FVLIDGWSLL+
Sbjct: 177 SELKTAFEIGFLLFLPFLVIDMVVASILMSMGMMMLPPVMISLPFKILVFVLIDGWSLLI 236

Query: 239 ENLVKS 244
            NL+ +
Sbjct: 237 GNLIAT 242


>gi|254462066|ref|ZP_05075482.1| flagellar biosynthetic protein FliP [Rhodobacterales bacterium
           HTCC2083]
 gi|206678655|gb|EDZ43142.1| flagellar biosynthetic protein FliP [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 256

 Score =  190 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 92/240 (38%), Positives = 151/240 (62%), Gaps = 9/240 (3%)

Query: 12  VTPELVFAKSSLHD-----VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
           + P +  A++++       V       +  +  ++   + T L+I P  L+ +T F R I
Sbjct: 20  LVPSISLAQTAVEGMPALNVTTGADGETQYSLSLQILALMTALTILPSFLLGITAFTRVI 79

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IV SILR  MG    PPN V+IS+ALF+TFY+M+PT ++  E  I P +N Q+    AI+
Sbjct: 80  IVLSILRQAMGTQQTPPNQVLISIALFLTFYIMAPTFEQIYEKAISPYLNGQMQPVAAIE 139

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
             A     F+  NTRE +L++F +MA     +     N+ + Y +L+P+F+ SEL+ +F+
Sbjct: 140 TGAAILSEFLILNTRESELAMFAEMAG----DAPYESNEDVPYTVLMPAFITSELKTAFQ 195

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           IGFL+ LPFL+ID+++A+I+MA+GMMML P  +SLPFK++ FVL+DGW++ + ++  +++
Sbjct: 196 IGFLLFLPFLVIDLVIASILMALGMMMLSPMLVSLPFKLLLFVLVDGWAMTIGSIASTYV 255


>gi|54297702|ref|YP_124071.1| flagellar biosynthesis protein FliP [Legionella pneumophila str.
           Paris]
 gi|53751487|emb|CAH12905.1| Flagellar biosynthetic protein FliP [Legionella pneumophila str.
           Paris]
          Length = 249

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 98/226 (43%), Positives = 144/226 (63%), Gaps = 7/226 (3%)

Query: 22  SLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79
           S   V   P      ++ +  +     T+L++ P LL+ +T F R IIV SILR  +GM 
Sbjct: 26  SFPVVTMQPGTNGSQSYSINLQILIFMTLLTVLPGLLMAMTSFTRIIIVLSILRQAIGMA 85

Query: 80  SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139
             P N ++I +ALFMT++VMSP  ++  E  IQP MN +I  + A+    +P   FM N 
Sbjct: 86  QTPTNQILIGIALFMTYFVMSPVFNKINETAIQPYMNERIDFSLALSNAQKPLRQFMLNQ 145

Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
           TR+ DLSLF   AH+  +       D I   +LIP+F+ SEL+ +F+IGF++ LPFLIID
Sbjct: 146 TRKNDLSLFEKFAHNVPK-----TLDEIPMSVLIPAFITSELKTAFQIGFVLFLPFLIID 200

Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++V++++MAMGMMML P  ISLPFK++ FV++DGW+L++ +L  SF
Sbjct: 201 LVVSSLLMAMGMMMLSPLIISLPFKIMLFVMVDGWTLVLGSLASSF 246


>gi|87119473|ref|ZP_01075370.1| Flagellar transport protein FliP [Marinomonas sp. MED121]
 gi|86164949|gb|EAQ66217.1| Flagellar transport protein FliP [Marinomonas sp. MED121]
          Length = 249

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 88/229 (38%), Positives = 146/229 (63%), Gaps = 5/229 (2%)

Query: 19  AKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
           A+  L  +     D     + V  +   I T L++ P  L M+T F R ++V +ILR  +
Sbjct: 22  AEVGLPALTVTTNDDGTQDYSVSLQILFIMTALTLLPAALTMMTAFTRIVVVLAILRQAI 81

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G+   P N +++ +ALF+T ++M+PTLD+   + +QP +  +IT   AI++ + P   FM
Sbjct: 82  GLQQTPSNQIMVGMALFLTLFIMTPTLDKINAVALQPYLEEEITSIQAIEKASVPIRDFM 141

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
              TRE D++LF+ +A    +   I   + + + IL+P+F+ SEL+ +F+IGF+I +PFL
Sbjct: 142 LAQTRESDIALFVKLAG---KEGQIESLETLPFTILMPAFVASELKTAFQIGFMIFIPFL 198

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++DM+VA+++MAMGMMML P  ISLPFK++ FV++DGW++++  L  SF
Sbjct: 199 VLDMVVASVLMAMGMMMLSPIIISLPFKIMLFVMVDGWAMIMGTLAASF 247


>gi|126697832|ref|YP_001086729.1| flagellar biosynthesis protein FliP [Clostridium difficile 630]
 gi|255099428|ref|ZP_05328405.1| flagellar biosynthesis protein FliP [Clostridium difficile
           QCD-63q42]
 gi|115249269|emb|CAJ67082.1| Flagellar biosynthesis protein FliP [Clostridium difficile]
          Length = 221

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 80/220 (36%), Positives = 134/220 (60%), Gaps = 3/220 (1%)

Query: 26  VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
           +  +P      T  ++ F   T L   P ++ M+T F R +I  S L++ +G     P+ 
Sbjct: 4   LSKLPLADVPYTSSMQLFLFLTALMFLPFVMFMMTSFVRIVISLSFLKSALGAQQAIPSQ 63

Query: 86  VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145
           +++ LA+ +T ++M P L+   E  +QP M  ++T   A++    P   F+   TR+ DL
Sbjct: 64  ILVGLAIVLTIFIMRPVLNEINEKALQPYMKEEVTMEEAMKEAEGPIKEFLLTQTRQTDL 123

Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
            LF++ A    +       ++I   +++P+F ISEL+ +F+IGFLI +PFLIID++VA++
Sbjct: 124 DLFVEQAGLKEKK---LTRENIPLSVVVPAFAISELKTAFQIGFLIYIPFLIIDLVVASV 180

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +M+MGM MLPP  ISLPFK++ FV++DGW+L+V+ L+  F
Sbjct: 181 LMSMGMFMLPPVMISLPFKLLLFVMVDGWNLIVKTLILGF 220


>gi|91200236|emb|CAJ73280.1| strongly similar to polar flagellar assembly protein FliP
           [Candidatus Kuenenia stuttgartiensis]
          Length = 254

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 85/208 (40%), Positives = 134/208 (64%), Gaps = 4/208 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
             +++     T L++ P LL+ +T F R IIV S +R  +   ++PPN ++I +ALF+TF
Sbjct: 49  AEVLKIVFFLTGLTLLPGLLLAMTSFTRIIIVLSFVRKALSFHTLPPNQILIGIALFLTF 108

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           +VM+P         +QP +  +IT+  A+++  EP   FM   TR+KD++LF ++A    
Sbjct: 109 FVMTPVWTAINSDALQPYIKEEITQDEALKKGIEPVRKFMLKQTRKKDIALFSNIAKVEK 168

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
                     I   ILIP+F+ SEL+ SF++GFL+ LPFL+ID++VA ++ +MGM MLPP
Sbjct: 169 P----FSASDIPMHILIPAFVTSELKTSFQMGFLLFLPFLVIDLVVACVLTSMGMFMLPP 224

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKS 244
             IS+PFK+I FVL+DGW L++++L+ S
Sbjct: 225 VMISMPFKLILFVLVDGWQLIIQSLITS 252


>gi|157363490|ref|YP_001470257.1| flagellar biosynthesis protein FliP [Thermotoga lettingae TMO]
 gi|157314094|gb|ABV33193.1| flagellar biosynthetic protein FliP [Thermotoga lettingae TMO]
          Length = 250

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 81/208 (38%), Positives = 123/208 (59%), Gaps = 3/208 (1%)

Query: 39  IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
            +    I T+L++AP +LI+ T F R I+VFS LR  +G    PP+ V+I LALF+TF++
Sbjct: 43  TLEILLIITVLALAPSILILFTSFTRIIVVFSFLRNALGTRQTPPSQVLIGLALFLTFFI 102

Query: 99  MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN-NTREKDLSLFMDMAHSSHR 157
           M P  +      + P M  +I       R+      FM        +      +A S  +
Sbjct: 103 MQPVWNDIYNDALTPYMEKEIGYEELFSRMIGRVRQFMLKELVDHHNEDNVFLLASSVGK 162

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
             D  K +     ILIP+F++ EL   F++G L+ +PF++IDMIV++I++AMGM+M+PP 
Sbjct: 163 KFD--KIEDAPNSILIPAFVLGELEIGFKMGVLLYIPFIVIDMIVSSILLAMGMIMIPPV 220

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
            ISLPFKV+ F++++GW LLV  L+KSF
Sbjct: 221 LISLPFKVLLFIVVNGWDLLVSGLIKSF 248


>gi|300817291|ref|ZP_07097509.1| flagellar biosynthetic protein FliP [Escherichia coli MS 107-1]
 gi|300530267|gb|EFK51329.1| flagellar biosynthetic protein FliP [Escherichia coli MS 107-1]
          Length = 276

 Score =  189 bits (481), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 83/214 (38%), Positives = 132/214 (61%), Gaps = 6/214 (2%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
            +    +  ++   + T++ + P +++M+TCF RFIIV S+LR  +G+   PPN ++I +
Sbjct: 36  GNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGI 95

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           AL +T  VM P      +  + P  N+QIT T A+   A P   FM   T +K ++  M 
Sbjct: 96  ALSLTMLVMRPIWLNIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMT 155

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           +  +     D       +  I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMG
Sbjct: 156 IGGAKGHAADQ------DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMG 209

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           MMML P  +SLPFK++ FVLIDGWSL +  L  S
Sbjct: 210 MMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243


>gi|54294676|ref|YP_127091.1| flagellar biosynthesis protein FliP [Legionella pneumophila str.
           Lens]
 gi|53754508|emb|CAH15992.1| Flagellar biosynthetic protein FliP [Legionella pneumophila str.
           Lens]
          Length = 249

 Score =  189 bits (480), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 98/226 (43%), Positives = 144/226 (63%), Gaps = 7/226 (3%)

Query: 22  SLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79
           S   V   P      ++ +  +     T+L++ P LL+ +T F R IIV SILR  +GM 
Sbjct: 26  SFPVVTMQPGTNGSQSYSINLQILIFMTLLTVLPGLLMAMTSFTRIIIVLSILRQAIGMA 85

Query: 80  SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139
             P N ++I +ALFMT++VMSP  ++  E  IQP MN +I  + A+    +P   FM N 
Sbjct: 86  QTPTNQILIGIALFMTYFVMSPVFNKINETAIQPYMNERIDFSLALSNAQKPLRQFMLNQ 145

Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
           TR+ DLSLF   AH+  +       D I   +LIP+F+ SEL+ +F+IGF++ LPFLIID
Sbjct: 146 TRKNDLSLFEKFAHNVPK-----TLDEIPMSVLIPAFITSELKTAFQIGFILFLPFLIID 200

Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++V++++MAMGMMML P  ISLPFK++ FV++DGW+L++ +L  SF
Sbjct: 201 LVVSSLLMAMGMMMLSPLIISLPFKIMLFVMVDGWTLVLGSLASSF 246


>gi|167630307|ref|YP_001680806.1| flagellar biosynthetic protein flip [Heliobacterium modesticaldum
           Ice1]
 gi|167593047|gb|ABZ84795.1| flagellar biosynthetic protein flip [Heliobacterium modesticaldum
           Ice1]
          Length = 243

 Score =  189 bits (480), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 95/245 (38%), Positives = 154/245 (62%), Gaps = 7/245 (2%)

Query: 4   YCFFALFLVTPELVFAKSSLHDV---MNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
               A+F      + A   +  V   +    + +  +  ++   + TILS+AP +LIM+T
Sbjct: 2   VLLLAIFYWVTPALAAPLQIPTVSFGVESTENPTEVSTSLQILFLLTILSLAPSILIMMT 61

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
           CF R I+V    RT + + ++PPN V+I L LF+TF++M+PT     +  +QP +   ++
Sbjct: 62  CFTRIIVVLHFTRTALALQTMPPNQVLIGLTLFLTFFIMAPTWSAINDQALQPYLAGTLS 121

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
           +  A+++ + P   FM   TREKDL+LF++M+      T       I  +++IP+F++SE
Sbjct: 122 QEQALEKASTPLREFMLKQTREKDLALFVNMSDMEQPQTYR----DIPIKVVIPAFILSE 177

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +F+IG +I LPF++IDMIV +++M+MGMMMLPP  ISLPFKV+ FVL+DGW L+V +
Sbjct: 178 LKTAFQIGAVIYLPFIVIDMIVGSVLMSMGMMMLPPMMISLPFKVLVFVLVDGWYLIVRS 237

Query: 241 LVKSF 245
           L+ S+
Sbjct: 238 LILSY 242


>gi|257457603|ref|ZP_05622770.1| flagellar biosynthetic protein FliP [Treponema vincentii ATCC
           35580]
 gi|257444989|gb|EEV20065.1| flagellar biosynthetic protein FliP [Treponema vincentii ATCC
           35580]
          Length = 269

 Score =  189 bits (480), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 129/230 (56%), Gaps = 2/230 (0%)

Query: 17  VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
             A   ++  +  P +     + ++   + T++++AP +L+++T F R  I    ++  +
Sbjct: 42  AGAIPFVNLNIREPQNNREVAFSIQLLLLITLITLAPSILLLMTSFLRLSIALDFIKRAL 101

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
            +  VPP  V+  +ALF+T ++M PT     +   +P+ + QI   TA     +P  +FM
Sbjct: 102 SLQQVPPTQVLNGIALFLTIFIMWPTFTEIYDKSFKPMADGQINIETAYTEAEKPLRLFM 161

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
                       + +  S  R         +   +LIP+F++ EL  +F+IG  + LPF+
Sbjct: 162 YKQMAHDPSH--IRLCMSLARMDKPNTLADVPTHVLIPAFILHELTVAFQIGIFLYLPFI 219

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           IIDM+VA+I+M+MGM+MLPP  IS+PFK+I FVL+DGW+LLV  L +SF+
Sbjct: 220 IIDMVVASILMSMGMIMLPPVQISMPFKLILFVLVDGWNLLVGQLFQSFL 269


>gi|291286235|ref|YP_003503051.1| flagellar biosynthetic protein FliP [Denitrovibrio acetiphilus DSM
           12809]
 gi|290883395|gb|ADD67095.1| flagellar biosynthetic protein FliP [Denitrovibrio acetiphilus DSM
           12809]
          Length = 243

 Score =  189 bits (480), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 98/245 (40%), Positives = 152/245 (62%), Gaps = 7/245 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           ++   F A+    P    A     +  N P D++++   ++   + T +SIAP  L+++T
Sbjct: 5   LLAIPFTAVLAADPIPFPAFRFGMEQANSPQDVAVT---IQIMLLMTFISIAPGFLVLMT 61

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R +IVFS+LRT MG   +PPN V++SLAL +TFY+M+P        G+ P     IT
Sbjct: 62  SFTRIVIVFSLLRTAMGTSQMPPNQVLLSLALILTFYIMNPVFTEMYNKGLGPYFEETIT 121

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
               +  V +P   FM  NTR++D+  F+ ++  +   T     D I   +L+ SF++SE
Sbjct: 122 FQEMVSEVKKPLRKFMLYNTRKQDVRTFLSISGEARPKT----ADDIPDLVLLSSFVVSE 177

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L  +F++GFL+ LPFLIID +VA+++++MGMMMLPP  IS+PFK++ FVL+DGW L+V +
Sbjct: 178 LTTAFQMGFLLFLPFLIIDFVVASVLLSMGMMMLPPVMISVPFKIMLFVLVDGWGLIVTS 237

Query: 241 LVKSF 245
           +VKSF
Sbjct: 238 IVKSF 242


>gi|328948400|ref|YP_004365737.1| flagellar biosynthetic protein FliP [Treponema succinifaciens DSM
           2489]
 gi|328448724|gb|AEB14440.1| flagellar biosynthetic protein FliP [Treponema succinifaciens DSM
           2489]
          Length = 281

 Score =  189 bits (480), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 84/226 (37%), Positives = 131/226 (57%), Gaps = 6/226 (2%)

Query: 23  LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82
           L      P   +   + V+   + T+L++AP + I++TCF RF IV   ++  + +  VP
Sbjct: 59  LSFSATAPRSGNEVAFSVQLLLLLTLLTLAPSIFILMTCFLRFSIVLDFIKRALSLQQVP 118

Query: 83  PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT-- 140
           P  V+  +A+FMT + M PT  +      QPL NN+IT T AI++   P  +FM      
Sbjct: 119 PTAVLNGIAIFMTLFCMWPTFRQIYTDSFQPLSNNEITLTEAIEKAESPIRIFMFRQMGN 178

Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
            +  +  FM MA              +   +LIP++++ EL  +F+IG L+ +PF++IDM
Sbjct: 179 DKNSIRTFMTMAGLGRP----ANASDVPTYVLIPAYILHELTVAFKIGILLYIPFIVIDM 234

Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +VA+I+M+MGMMMLPP  IS+PFK++ FVL+DGW LL + L  S +
Sbjct: 235 VVASILMSMGMMMLPPVQISMPFKLMLFVLVDGWHLLTQQLFVSVL 280


>gi|114320138|ref|YP_741821.1| flagellar biosynthesis protein FliP [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226532|gb|ABI56331.1| flagellar biosynthetic protein FliP [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 250

 Score =  189 bits (479), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 100/251 (39%), Positives = 147/251 (58%), Gaps = 10/251 (3%)

Query: 1   MIRYCFFALF----LVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPI 54
           M R  F  L     L  P +V A+    + + I       TW +  +   + T+L++ P 
Sbjct: 2   MARRTFLILIALAGLTAPVVVLAQPPGLEALRITEGEDGQTWSLSLQVLILMTLLTLLPA 61

Query: 55  LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
            L+M+T F R IIV +ILR  MG  S P N V+I LALF+T +VM+P      +  + P 
Sbjct: 62  GLLMMTSFTRIIIVLAILRQAMGTASTPSNQVLIGLALFLTLFVMAPVFQEVHDTALAPY 121

Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
           +  ++    A++  +EP   FM   TRE DL LF+ +A        +   D + + +L+P
Sbjct: 122 LAEEMAPDEALEAASEPMRGFMIAQTRESDLGLFLRIAG----YDQVDSPDDVPFTVLVP 177

Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234
           +FM SEL+ +F IGF+I LPFL+ID++VA+ +M+MGM+ML P  ISLPFK++ FVL+DGW
Sbjct: 178 AFMTSELKTAFTIGFIIYLPFLVIDLVVASTLMSMGMLMLSPMIISLPFKILLFVLVDGW 237

Query: 235 SLLVENLVKSF 245
           SLL+  L  SF
Sbjct: 238 SLLMGTLASSF 248


>gi|226944502|ref|YP_002799575.1| flagellar biosynthetic protein [Azotobacter vinelandii DJ]
 gi|226719429|gb|ACO78600.1| flagellar biosynthetic protein [Azotobacter vinelandii DJ]
          Length = 252

 Score =  189 bits (479), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 96/244 (39%), Positives = 153/244 (62%), Gaps = 6/244 (2%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTI--LSIAPILLIMVTC 61
           +   AL L+      A ++L  + + P       W +    +  +  ++  P LL+M+T 
Sbjct: 11  WPAAALGLILCLPASALAALPALTSKPLAGGGQQWSLSLQTLLLLSSMAFLPALLLMMTA 70

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F R IIV  +LRT +G  + PPN V++ LALF+T ++MSP LDR+ +    P   ++I  
Sbjct: 71  FTRIIIVLGLLRTAIGTPAAPPNQVLLGLALFLTLFIMSPVLDRTYQSAWLPFSRDEIGF 130

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
              ++  ++PF  FM   TRE DL+LF  +A    R  ++   + +  R+L+P+F+ SEL
Sbjct: 131 EQFLETGSQPFREFMLAQTRESDLALFARLA----RLGELEGPEQVPLRVLMPAFVTSEL 186

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
           + +F+IGF I +PFLIID++VA+++MA+GMMM+PP +ISLPFK++ FVL+DGW LL+ +L
Sbjct: 187 KTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATISLPFKLMLFVLVDGWQLLIGSL 246

Query: 242 VKSF 245
            +SF
Sbjct: 247 AQSF 250


>gi|283834476|ref|ZP_06354217.1| flagellar biosynthetic protein FliP [Citrobacter youngae ATCC
           29220]
 gi|291070023|gb|EFE08132.1| flagellar biosynthetic protein FliP [Citrobacter youngae ATCC
           29220]
          Length = 252

 Score =  188 bits (478), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 88/230 (38%), Positives = 140/230 (60%), Gaps = 8/230 (3%)

Query: 17  VFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74
             A+     ++N+ +  +   + V  +   + T++ I P L++M+TCF RFIIV S+LR 
Sbjct: 22  ACAQGGDIPLLNVISHGNSQEYSVKIQVLILMTLVGILPTLVLMMTCFTRFIIVLSLLRQ 81

Query: 75  GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134
            +G+   PPN ++I +AL +T  VM P      +  + P  N+QIT   A+   A P   
Sbjct: 82  ALGLQQTPPNRILIGIALSLTMLVMRPIWINIYDHAVVPFENDQITLPDALSTAASPLKR 141

Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
           FM   T +K ++  M +A++     D       +  I++P++++SEL+ +F+IGF+I +P
Sbjct: 142 FMLAQTNKKAIAQIMTIANAKGNAADQ------DLSIVVPAYVLSELKTAFQIGFMIYIP 195

Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           FL+ID+IVA+++MAMGMMML P  +SLPFK++ FVLIDGW+L V  L  S
Sbjct: 196 FLVIDLIVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWALTVGTLTSS 245


>gi|86157788|ref|YP_464573.1| flagellar biosynthesis protein FliP [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85774299|gb|ABC81136.1| flagellar biosynthetic protein FliP [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 236

 Score =  188 bits (478), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 92/240 (38%), Positives = 140/240 (58%), Gaps = 5/240 (2%)

Query: 6   FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65
             AL L    L  A  +    + I  +   S   V+ F + T LS A  LL+ VT F R 
Sbjct: 1   MSALGLPLAALTVASPAAEGALQISVNGGGSA-PVKLFLVLTALSFATALLVSVTSFTRI 59

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
           +IV S LR  +G   VPPN V++ LAL ++ +VMSPT  R     + P ++++I +  A+
Sbjct: 60  VIVLSFLRQALGTPQVPPNQVLVGLALVLSCFVMSPTATRVYADALGPYLDDRIGQAEAL 119

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
           +R + P   FM   TR++DL+LF +++ +          D I   I +P+FMISEL  +F
Sbjct: 120 ERASGPVREFMLRQTRDQDLALFYEISATPRPAA----GDAIPMSIAVPAFMISELTTAF 175

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            +G  + +P L++D++V+ I+M+MGMMM+PPT I+LP K+  FV+ DGW L+V  L +SF
Sbjct: 176 RMGLFLYVPLLLVDLLVSAILMSMGMMMVPPTLIALPVKIGLFVMADGWRLVVGALARSF 235


>gi|284989540|ref|YP_003408094.1| flagellar biosynthetic protein FliP [Geodermatophilus obscurus DSM
           43160]
 gi|284062785|gb|ADB73723.1| flagellar biosynthetic protein FliP [Geodermatophilus obscurus DSM
           43160]
          Length = 277

 Score =  188 bits (477), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 81/221 (36%), Positives = 132/221 (59%), Gaps = 4/221 (1%)

Query: 25  DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
           D ++I       +  +      T+LS+AP +L++ T F + I+V S+ R  +GM   PPN
Sbjct: 60  DGVDISIGGGSPSTSITLILAVTVLSVAPAVLLLATSFTKIIVVLSLTRNALGMQMSPPN 119

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
            V+  +ALF+T +VM P      E  +QP +N  +T T A      P   F+ +NTRE +
Sbjct: 120 TVLTGIALFLTLFVMGPVFSEMNETAVQPYLNGAMTMTQAYDVGVVPLREFLLDNTREDE 179

Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
           LSL + ++         T    +    L+P+F++SEL+ +F IG ++ +PFL++DM+V+ 
Sbjct: 180 LSLMVGLSGEEAP----TDAAAVSMTTLVPAFVLSELKSAFIIGLVVFIPFLVLDMLVSA 235

Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            +M+MGMMM+PP  +SLPFK++ FV++DGW+L+   LV S+
Sbjct: 236 ALMSMGMMMVPPVIVSLPFKLLLFVVVDGWALITTALVGSY 276


>gi|149908778|ref|ZP_01897438.1| putative flagellar assembly protein [Moritella sp. PE36]
 gi|149808052|gb|EDM67993.1| putative flagellar assembly protein [Moritella sp. PE36]
          Length = 246

 Score =  188 bits (477), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 82/243 (33%), Positives = 140/243 (57%), Gaps = 6/243 (2%)

Query: 5   CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIA--PILLIMVTCF 62
            + A+FL    L     +   + ++        + ++   +  + +++  P +L+M+T F
Sbjct: 6   IYLAVFLAFISLAAPAHADLALFSVNNGGQPQEYSIKLQLLLLMTALSLLPAMLLMLTSF 65

Query: 63  PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122
            R ++V +ILR  +G+   PPN V++ +AL +T  +M P   +  E    P  +  +T  
Sbjct: 66  TRIVVVLAILRQAIGLQQSPPNRVLVGIALTLTILIMRPVWTQIHEDAFLPYDSGSMTLI 125

Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182
            A+ +   P   FM   TRE DL   + + +       +T  D I + +L+P+F++SEL+
Sbjct: 126 EALGKAEIPLRTFMLKQTRETDLEQMLKIGNEP----PVTSVDDIPFVVLMPAFVLSELK 181

Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
            +F+IGF++ LPFL+ID++VA+++MAMGMMML P  ISLPFK++ FVL+DGW++ V  L 
Sbjct: 182 TAFQIGFMLFLPFLVIDLVVASVLMAMGMMMLSPLIISLPFKLMIFVLVDGWAMTVGTLT 241

Query: 243 KSF 245
            SF
Sbjct: 242 ASF 244


>gi|254474923|ref|ZP_05088309.1| flagellar biosynthetic protein FliP [Ruegeria sp. R11]
 gi|214029166|gb|EEB70001.1| flagellar biosynthetic protein FliP [Ruegeria sp. R11]
          Length = 247

 Score =  187 bits (476), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 95/232 (40%), Positives = 142/232 (61%), Gaps = 6/232 (2%)

Query: 14  PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73
           P    A+      +++    S+S   ++   + T+LS+AP LLIMVTCFP  + V SILR
Sbjct: 20  PGFAAAQDL---SLSLGDGQSLSARSIQLILLITVLSLAPGLLIMVTCFPFLVTVLSILR 76

Query: 74  TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133
             +G+   PPN+++ISLALF+T++VM P  + + + GI PL+  QI   T ++R   PF 
Sbjct: 77  QAIGLQQAPPNMMMISLALFLTYFVMEPVFNEAWQTGINPLIEEQIDVETGMERALVPFR 136

Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
            FM       D   F  +A        I          L+ SF++SE+ R+F++GFL+ L
Sbjct: 137 EFMAARL---DPDTFYAIADLRPGTAGIDPTPDAPLSTLVSSFLLSEIARAFQVGFLVFL 193

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           PFL+ID++VA ++M+MGMMM+PP  +SLPFK+ FFV+ DGWSL+   LV+S+
Sbjct: 194 PFLVIDLVVAAVLMSMGMMMVPPAVVSLPFKLAFFVVADGWSLIASALVRSY 245


>gi|257095348|ref|YP_003168989.1| flagellar biosynthesis protein FliP [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047872|gb|ACV37060.1| flagellar biosynthetic protein FliP [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 250

 Score =  187 bits (476), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 100/233 (42%), Positives = 147/233 (63%), Gaps = 7/233 (3%)

Query: 16  LVFAKSS-LHDVMNIPADLSISTW--IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72
             +A++  L  V + P      T+   ++T    T L+  P  L+M+T F R IIV S+L
Sbjct: 20  AAWAQAGGLPMVTSTPGVGGSQTYTLSIQTLLTLTALTFIPAALLMMTSFTRIIIVLSLL 79

Query: 73  RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132
           R  +G  + PPN V++ L+LF+TF++MSP LD        PL  N+IT   AI+R A P 
Sbjct: 80  RHALGTQTSPPNQVLLGLSLFLTFFIMSPVLDTVYTEAYLPLSENRITYLQAIERGAVPL 139

Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192
             FM   TRE D++LF  M ++          D I  R+LIP+F+ SEL+ +F+IGF+I 
Sbjct: 140 RKFMLKQTREADIALFARMTNAPR----FQSTDDIPMRLLIPAFVTSELKTAFQIGFIIF 195

Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +PFLI+DM+VA+++M+MGMMM+ P  ++LPFK++ FVL+DGW LL+ +LV SF
Sbjct: 196 IPFLIVDMVVASVLMSMGMMMMSPVMVALPFKLMLFVLVDGWHLLLGSLVASF 248


>gi|145297437|ref|YP_001140278.1| flagellar biosynthesis protein FliP [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850209|gb|ABO88530.1| lateral flagellar assembly protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 244

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 85/227 (37%), Positives = 131/227 (57%), Gaps = 4/227 (1%)

Query: 19  AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           A  +L  V+            ++     T+L + P LL+M+T F R IIV +ILR  MG+
Sbjct: 18  ADMTLFSVLPGAEGGEDYNIKLQILFFMTLLGLLPTLLLMMTSFTRIIIVLAILRQAMGL 77

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
              PPN V+I ++L +T  ++ P      +    P   N+I+ +  I R  +P   FM  
Sbjct: 78  QQSPPNRVLIGISLILTIVIIRPVWTDMYQHAFIPYDQNEISLSEGIARAEKPLRHFMLA 137

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
            TRE DL   + ++            D + + +L+P+F++SEL  +F+IGF++ +PFL+I
Sbjct: 138 QTREPDLEQMLRISGEP----TSLTKDEVPFGVLLPAFVLSELNTAFQIGFMLFIPFLVI 193

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           D++VA+++MAMGMMML P  ISLPFK++ FVL+DGWS+ V  L  SF
Sbjct: 194 DLVVASVLMAMGMMMLSPLIISLPFKLMVFVLVDGWSMTVGTLAASF 240


>gi|116626498|ref|YP_828654.1| flagellar biosynthesis protein FliP [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229660|gb|ABJ88369.1| flagellar biosynthetic protein FliP [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 245

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 74/219 (33%), Positives = 137/219 (62%), Gaps = 4/219 (1%)

Query: 27  MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLV 86
           ++   +    +  ++   + T++++ P  ++ +T F R ++V   LR  +G  S P N V
Sbjct: 30  ISAGKNGVSLSVPMQIVILLTLMTLLPAAVMSITPFLRIVVVLHFLRQALGTQSTPSNQV 89

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           +I LALF+   VM P +      G +P+   Q++   A+++ + P   F+    REKD+ 
Sbjct: 90  LIGLALFLALLVMQPVIADMYHQGWEPMEAGQLSPERALEQGSVPLHNFLAKFAREKDIH 149

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
           LF++++H+    T       +E ++LIP++++SEL+  F+IG ++ LPFLIID+++A++ 
Sbjct: 150 LFVEISHAPAPRTPA----DLEMKVLIPAYILSELKTGFQIGAVLFLPFLIIDLVIASVT 205

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +++GM+ LPP  IS PFK++ FVL+DGW+L+V +L++SF
Sbjct: 206 LSIGMVQLPPVMISAPFKILLFVLVDGWNLVVGSLMRSF 244


>gi|307721191|ref|YP_003892331.1| flagellar biosynthetic protein FliP [Sulfurimonas autotrophica DSM
           16294]
 gi|306979284|gb|ADN09319.1| flagellar biosynthetic protein FliP [Sulfurimonas autotrophica DSM
           16294]
          Length = 245

 Score =  187 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 93/223 (41%), Positives = 144/223 (64%), Gaps = 4/223 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           +++  ++ P         +    + T+L +AP +++++T F RF+IVF  LR  +G   V
Sbjct: 25  TMNLSLSAPDTPQQLVSSLNVLVVLTLLFLAPAMVLVMTTFTRFVIVFGFLRQALGTQQV 84

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PP  +++ LA+ +TF+VM P   ++   GI+P +  +I    A  +   PF  FM  NTR
Sbjct: 85  PPTQLLVMLAMILTFFVMEPIGTKAYNQGIKPYVAKEIGYEEAFTKTTLPFKNFMIRNTR 144

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           EKDL+LF+ +    +  +       +   I+IP+F+ISE++ +FEIGFL+ LPFL+IDM+
Sbjct: 145 EKDLALFLRIRKMQNPKSVA----DVPLSIVIPAFIISEMKTAFEIGFLLFLPFLVIDMV 200

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           VA+I+M+MGMMMLPP  ISLPFK++ FVLIDGW+LL+ NL+ S
Sbjct: 201 VASILMSMGMMMLPPVMISLPFKILVFVLIDGWNLLIGNLIFS 243


>gi|94968670|ref|YP_590718.1| flagellar biosynthesis protein FliP [Candidatus Koribacter
           versatilis Ellin345]
 gi|94550720|gb|ABF40644.1| flagellar biosynthetic protein FliP [Candidatus Koribacter
           versatilis Ellin345]
          Length = 244

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 84/241 (34%), Positives = 143/241 (59%), Gaps = 10/241 (4%)

Query: 5   CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
           CF  L +  P L          +N+PA  + +T       + T +++ P +L+ +T F R
Sbjct: 13  CFGMLSISRPAL-----GADHGVNLPAIGNNATPWT-IVVLLTAVTLLPAVLLCMTPFVR 66

Query: 65  FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
            ++VF  LR  +G  + P N  ++ L L +T ++M P +    +  + P+   +I+ T A
Sbjct: 67  LLVVFHFLRQALGTQTAPTNQTLVGLTLILTLFLMQPVITHIQQDALTPMQQGKISVTEA 126

Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
           I R AEP   FM   +REKDL+LF+++A      T    +  + +R++ P++++SEL+  
Sbjct: 127 ISRGAEPVRQFMLRFSREKDLALFVELAKLPPPKT----SQDLPFRVVAPAYILSELKAG 182

Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           F+IG ++ LPFL+ID+++A I  ++GMM LPP  IS P K++ FV++DGW+LL+ +L+KS
Sbjct: 183 FQIGAVLFLPFLVIDLVIAAITTSVGMMQLPPVVISTPVKILLFVMVDGWNLLIASLMKS 242

Query: 245 F 245
           F
Sbjct: 243 F 243


>gi|225569962|ref|ZP_03778987.1| hypothetical protein CLOHYLEM_06057 [Clostridium hylemonae DSM
           15053]
 gi|225161432|gb|EEG74051.1| hypothetical protein CLOHYLEM_06057 [Clostridium hylemonae DSM
           15053]
          Length = 220

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 78/212 (36%), Positives = 129/212 (60%), Gaps = 4/212 (1%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
                 +    + T++ + P +++M+T F R II+ S  R  +G+   PPN+V++ +ALF
Sbjct: 11  GGQVPTLEILVMMTVVMLLPSIVVMMTSFVRIIIILSFTRNAIGVQQTPPNMVLVGIALF 70

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           +T ++M P +        +P  N +I +  A+ R   P   FM   T    L+L++DMA 
Sbjct: 71  LTLFIMDPVIKDINTEAYEPYKNGEIAQEEALDRATVPMKKFMLKQTEVSTLNLYVDMAG 130

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
              +    T  + +  R++IPSFM SEL+R F  G L+ +PFL+ID+IV++ +M+MGM+M
Sbjct: 131 IEEK----TAPEDLPMRVVIPSFMTSELKRGFMAGLLLFIPFLLIDIIVSSTLMSMGMIM 186

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LPP +I+LPFK++ FV ++GW LL  ++V+SF
Sbjct: 187 LPPATIALPFKLLLFVTLNGWELLFSSIVQSF 218


>gi|149191147|ref|ZP_01869405.1| flagellar biosynthesis protein P [Vibrio shilonii AK1]
 gi|148834985|gb|EDL51964.1| flagellar biosynthesis protein P [Vibrio shilonii AK1]
          Length = 245

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 80/245 (32%), Positives = 134/245 (54%), Gaps = 4/245 (1%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           M       +         A+          ++ +  +  ++   + T+LS  P  +IM T
Sbjct: 1   MPIRILLMVLTFWFSPTQAEGLTILSETNTSEGTEYSVKLQILILMTMLSFVPAFVIMCT 60

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R IIV +ILR  +G+   PPN V+I +AL  T  +M P   +  +    P   + IT
Sbjct: 61  SFTRIIIVLAILRQALGLQQTPPNQVLIGIALIFTLLIMRPVWTKIYDTAYVPYSTDDIT 120

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A+    +P   +M + T+ K L     +A        +  ++ I + IL+P++++SE
Sbjct: 121 LMEALASAEKPLRRYMLDQTQRKALEQVTKIAGEK----TLASDEKIPFLILLPAYLLSE 176

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +F+IGF++ LPFL+ID++VA+++M+MGMMML P  +SLPFK++ FV++DGW LL+ +
Sbjct: 177 LKVAFQIGFMLFLPFLVIDLVVASVLMSMGMMMLSPLIVSLPFKLLVFVIVDGWGLLMGS 236

Query: 241 LVKSF 245
           L  SF
Sbjct: 237 LANSF 241


>gi|78777215|ref|YP_393530.1| flagellar biosynthesis protein FliP [Sulfurimonas denitrificans DSM
           1251]
 gi|78497755|gb|ABB44295.1| Flagellar transport protein FliP [Sulfurimonas denitrificans DSM
           1251]
          Length = 246

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 101/248 (40%), Positives = 151/248 (60%), Gaps = 8/248 (3%)

Query: 1   MIRYCFFALFLVTPELVFAKS----SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILL 56
           M R     L L    L  A S    +++  ++ P         +    + T+L +AP ++
Sbjct: 1   MFRIFLSILMLSAISLFGADSVAIPTMNFELSAPKTPEQLVSSLNVLVLLTLLFLAPSMV 60

Query: 57  IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
           +++T F RF+IVF  LR  +G   VPP  +++ L + +TF+VM P   ++ E GI+P + 
Sbjct: 61  LVMTTFTRFVIVFGFLRQALGTQQVPPTQLLVMLGMILTFFVMEPVGIKAYEDGIKPYIE 120

Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
            +I    A  + A PF  FM  NTREKDL+LF  +    +  T       +   I+IP+F
Sbjct: 121 EKIGYEEAFDKTALPFKNFMIRNTREKDLALFFRIRKMQNPTTIA----EVPLSIIIPAF 176

Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
           +ISEL+ +FEIGFL+ LPFL+IDM+VA+I+M+MGMMMLPP  I+LPFK++ F+LIDGW+L
Sbjct: 177 VISELKTAFEIGFLLFLPFLVIDMVVASILMSMGMMMLPPVMIALPFKILIFILIDGWNL 236

Query: 237 LVENLVKS 244
           L+ NL+ S
Sbjct: 237 LIGNLIAS 244


>gi|261855324|ref|YP_003262607.1| flagellar biosynthesis protein FliP [Halothiobacillus neapolitanus
           c2]
 gi|261835793|gb|ACX95560.1| flagellar biosynthetic protein FliP [Halothiobacillus neapolitanus
           c2]
          Length = 274

 Score =  187 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 91/234 (38%), Positives = 148/234 (63%), Gaps = 4/234 (1%)

Query: 12  VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
              + + A       +      +  +  ++   + T+L++ P LL+++T F R IIV S+
Sbjct: 37  AVTQAMAAPGLPAVTLTTDGAQTQYSLTLQILALMTVLTLLPSLLLLMTSFTRIIIVLSL 96

Query: 72  LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
           +R  +G+   P N ++I LALF+T ++M+P   +S + GI+P M+ +IT   AI++ AEP
Sbjct: 97  MRQALGLTQTPSNQILIGLALFLTLFIMAPVFQKSYDEGIKPYMDQKITANVAIEKAAEP 156

Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
              FM N TR+ D++LF ++ H     T       + Y +L+ +F+ SEL+ +FEIGFLI
Sbjct: 157 LRTFMLNQTRQSDIALFQNIGHYPAFETPK----DVPYTVLMAAFITSELKTAFEIGFLI 212

Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            +PFLIID++VA+++M+MGMMML P  +SLPFK++ FVL+DGW+L++  L  SF
Sbjct: 213 FIPFLIIDLVVASVLMSMGMMMLSPMIVSLPFKLMLFVLVDGWTLIMGTLASSF 266


>gi|89094445|ref|ZP_01167385.1| flagellar biosynthetic protein FliP [Oceanospirillum sp. MED92]
 gi|89081337|gb|EAR60569.1| flagellar biosynthetic protein FliP [Oceanospirillum sp. MED92]
          Length = 250

 Score =  187 bits (474), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 90/232 (38%), Positives = 145/232 (62%), Gaps = 5/232 (2%)

Query: 15  ELVFAKSSLHDVMNIPADLSIS-TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73
            L          +N   D S + +  ++   + T+L+  P +L+M+T F R IIVF+ILR
Sbjct: 21  GLAADVGIPAVTLNTAEDGSTNYSVTLQVLILMTMLTFLPAMLMMMTSFARIIIVFAILR 80

Query: 74  TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133
             +G+   P N +++ +A+F+T ++M+P LD+      QP MN ++    A+Q  + PF 
Sbjct: 81  QALGLQQTPSNQIMVGMAMFLTLFIMTPVLDQIYIQAAQPYMNEEMNVLEALQAASIPFR 140

Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
            FM    RE DL LFM ++ +      +   + I + +L+P+F+ SEL+ +F+IGF++ +
Sbjct: 141 EFMMLQVRESDLELFMRISGTP----AVETPEQIPFTVLVPAFVTSELKTAFQIGFMLFI 196

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           PFLIID++VA+++MAMGMMML P  ISLPFK++ FVL+DGW+L++  L  SF
Sbjct: 197 PFLIIDLVVASVLMAMGMMMLSPVIISLPFKIMLFVLVDGWALVIGTLAASF 248


>gi|68164510|gb|AAY87239.1| predicted flagellar biosynthesis protein [uncultured bacterium
           BAC17H8]
          Length = 256

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 87/232 (37%), Positives = 141/232 (60%), Gaps = 4/232 (1%)

Query: 14  PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73
           P            +N  +D S  +  ++   + T L++ P L++ +T F R IIV SILR
Sbjct: 26  PAAAQVAGIPALSINEGSDGSTYSLSLQILALMTALTLLPSLVLGMTSFTRIIIVLSILR 85

Query: 74  TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133
             MG    PPN V++++ALF+TF++M+PTL       I P ++ Q+   TA+    E   
Sbjct: 86  QAMGTQQTPPNQVLVAIALFLTFFIMAPTLTTLNSDVISPYLDGQLPAETALANGTEVMK 145

Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
            F+  NTR  DL +F +M      +      + +   +L+P+F+ SEL+ +F+IGFL+ L
Sbjct: 146 RFLVQNTRVNDLVMFTEMIG----DQPYASAEDVPLSVLLPAFITSELKTAFQIGFLLFL 201

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           PFL+IDM++A+I+M++GMMML P  ++LPFK++ FVL+DGW++ V +LV ++
Sbjct: 202 PFLVIDMVIASILMSLGMMMLSPMLVALPFKLLLFVLVDGWAMTVGSLVATY 253


>gi|74101640|gb|AAZ99730.1| FliPL [Aeromonas hydrophila]
          Length = 244

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 86/227 (37%), Positives = 131/227 (57%), Gaps = 4/227 (1%)

Query: 19  AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           A  +L  V+            ++     T+L + P LL+M+T F R IIV +ILR  MG+
Sbjct: 18  ADMTLFSVLPGAEGGEDYNIKLQILFFMTLLGLLPTLLLMMTSFTRIIIVLAILRQAMGL 77

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
              PPN V+I ++L +T  +M P      +    P   N+I+ +  I R  +P   FM  
Sbjct: 78  QQSPPNRVLIGISLILTIVIMRPVWTDMYQHAFIPYDQNEISLSEGIARAEKPLRHFMLA 137

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
            TRE DL   + ++            D + + +L+P+F++SEL  +F+IGF++ +PFL+I
Sbjct: 138 QTREPDLEQMLRISGEPI----SLTKDEVPFGVLLPAFVLSELNTAFQIGFMLFIPFLVI 193

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           D++VA+++MAMGMMML P  ISLPFK++ FVL+DGWS+ V  L  SF
Sbjct: 194 DLVVASVLMAMGMMMLSPLIISLPFKLMVFVLVDGWSMTVGTLAASF 240


>gi|183221911|ref|YP_001839907.1| flagellar biosynthesis protein FliP [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189911980|ref|YP_001963535.1| flagellar biosynthesis protein FliP [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167776656|gb|ABZ94957.1| Endoflagellar biosynthesis pathway protein [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167780333|gb|ABZ98631.1| Flagellar biosynthetic protein FliP; putative membrane protein;
           putative signal peptide [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 269

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 81/226 (35%), Positives = 144/226 (63%), Gaps = 7/226 (3%)

Query: 23  LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82
           L   +N       ++  +    + TILS+AP +++ VT F + +IVF  +R  + + ++P
Sbjct: 47  LSFNVNEARGPKETSLSLMILFLVTILSLAPAIVMSVTSFTKVVIVFDFVRRALSLQNLP 106

Query: 83  PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142
           PN V++ LALF+TF++M+PT+ +  +  +QP +N +I ++  ++   +    FM     +
Sbjct: 107 PNQVMMGLALFVTFFIMAPTIGKVNDEALQPYLNGKIDQSAFMEGSMKHLRQFMIRQLGK 166

Query: 143 ---KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
              KD++LF+ +     +  ++   + +   +L+P+FM+SE++++F IG  I +PF++ID
Sbjct: 167 DGTKDVALFLKI----GKVQNVKSFEDVPSYVLVPAFMLSEIKKAFIIGIYIFIPFIVID 222

Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +IVA+ ++AMG MMLPP  ISLP K+I F+LIDGW+LLV  LV+S+
Sbjct: 223 LIVASALLAMGFMMLPPVMISLPLKLILFILIDGWNLLVLELVRSY 268


>gi|268316332|ref|YP_003290051.1| flagellar biosynthetic protein FliP [Rhodothermus marinus DSM 4252]
 gi|262333866|gb|ACY47663.1| flagellar biosynthetic protein FliP [Rhodothermus marinus DSM 4252]
          Length = 269

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 91/195 (46%), Positives = 140/195 (71%), Gaps = 4/195 (2%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP ++I+ T F R +++FSILRT +G+   PP  V+I LALF+T ++M P  D+  +  +
Sbjct: 77  APAIIILTTSFTRLVVIFSILRTALGLQQSPPTQVLIGLALFLTLFIMYPVFDQIHDEAL 136

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           +P ++ +IT+  A++R A P   FM   TREKDL LFMD+A+         + + + + I
Sbjct: 137 RPYLDGEITQQVALERAAAPLRAFMLRQTREKDLMLFMDLANV----EAFDRPEDVPFYI 192

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           L+P+F+ISELR +F+IGF+I LPFL++D+IVA+++M+MGMMMLPP  ISLP K++ FVL 
Sbjct: 193 LVPAFVISELRIAFQIGFMIFLPFLLVDLIVASVLMSMGMMMLPPVMISLPLKLLLFVLA 252

Query: 232 DGWSLLVENLVKSFI 246
           DGW L+VE++V+ ++
Sbjct: 253 DGWYLVVESVVRGYL 267


>gi|323975949|gb|EGB71043.1| FliP family protein [Escherichia coli TW10509]
          Length = 250

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 83/214 (38%), Positives = 132/214 (61%), Gaps = 6/214 (2%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
            +    +  ++   + T++ + P +++M+TCF RFIIV S+LR  +G+   PPN ++I +
Sbjct: 36  GNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGI 95

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           AL +T  VM P      +  + P  N+QIT T A+   A P   FM   T +K ++  M 
Sbjct: 96  ALSLTLLVMRPVWLNIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMT 155

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           +  +     D       +  I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMG
Sbjct: 156 IGGAKGNAADQ------DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMG 209

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           MMML P  +SLPFK++ FVLIDGWSL +  L  S
Sbjct: 210 MMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243


>gi|303240272|ref|ZP_07326791.1| flagellar biosynthetic protein FliP [Acetivibrio cellulolyticus
           CD2]
 gi|302592182|gb|EFL61911.1| flagellar biosynthetic protein FliP [Acetivibrio cellulolyticus
           CD2]
          Length = 269

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 82/195 (42%), Positives = 131/195 (67%), Gaps = 1/195 (0%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +L+M+T F R IIV S LR  +G   +PPN V+I LALF+T ++M+P +    E   
Sbjct: 75  APSILMMMTSFTRVIIVLSFLRNALGTQQMPPNQVLIGLALFLTLFIMNPVITEINETAY 134

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           +P  N +IT+  A++R ++    FM   T +KDL+LF+ ++ +     +     ++    
Sbjct: 135 KPYSNKEITQQVALERSSKTIKTFMLKQTEKKDLALFVSLSGTKTPIKEQEVP-NLPLTT 193

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           +IP+F+ISEL  +F++GFLI LPFL+ID++V++ +M+MGMMML P  ISLPFK++ F+++
Sbjct: 194 IIPAFLISELTTAFKMGFLIYLPFLVIDLVVSSTLMSMGMMMLSPVMISLPFKILLFIMV 253

Query: 232 DGWSLLVENLVKSFI 246
            GW+LL + +V SF+
Sbjct: 254 GGWNLLSQMIVNSFV 268


>gi|254444823|ref|ZP_05058299.1| flagellar biosynthetic protein FliP [Verrucomicrobiae bacterium
           DG1235]
 gi|198259131|gb|EDY83439.1| flagellar biosynthetic protein FliP [Verrucomicrobiae bacterium
           DG1235]
          Length = 257

 Score =  186 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 88/253 (34%), Positives = 149/253 (58%), Gaps = 16/253 (6%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPA-----------DLSISTWIVRTFGIFTILSIA 52
           +   A+ L       A+++  D    P                    ++   + T+L++ 
Sbjct: 8   FWILAIALFCVSAASAQTAAPDPAGSPGLQLSVNMGGEDGQQDVGAAIQVLLLMTLLTLG 67

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +++++T F R IIV   +RT +G+   P N +I+ L+L +TF++M P L    +  +Q
Sbjct: 68  PSIVVLMTSFTRIIIVLGFVRTAIGVHQAPSNQIIVGLSLIITFFIMQPVLSNVNDNALQ 127

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           PLM  +IT   A +  + P   FM N TR +D+  F+D++     N   T    +  R++
Sbjct: 128 PLMAKEITTAQAFEAGSGPLREFMLNQTRLQDIEFFLDLS-----NYGPTTASELPMRVV 182

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           +P+F++SE+R +F++GFLI LPF+++D +V T +MAMGMMM+PP  ISLPFK++ FVL+D
Sbjct: 183 VPAFVMSEIRTAFKMGFLIFLPFIMVDFLVGTTLMAMGMMMMPPVVISLPFKLLLFVLVD 242

Query: 233 GWSLLVENLVKSF 245
           GW+L++++LV+SF
Sbjct: 243 GWTLVIKSLVQSF 255


>gi|120597289|ref|YP_961863.1| flagellar biosynthesis protein FliP [Shewanella sp. W3-18-1]
 gi|146294566|ref|YP_001184990.1| flagellar biosynthesis protein FliP [Shewanella putrefaciens CN-32]
 gi|120557382|gb|ABM23309.1| flagellar biosynthetic protein FliP [Shewanella sp. W3-18-1]
 gi|145566256|gb|ABP77191.1| flagellar biosynthetic protein FliP [Shewanella putrefaciens CN-32]
          Length = 244

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 87/245 (35%), Positives = 141/245 (57%), Gaps = 3/245 (1%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           ++R    + FL  P  + ++      ++           +    + T +S  P++L+M+T
Sbjct: 2   IVRLLLLSTFLFVPHAIASEGLTLFTLDSGESSQAVNIKLEILALMTAISFLPVMLMMLT 61

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R IIV +ILR  +G+   PPN V++ +AL +T ++M P  D+  +    P    +I 
Sbjct: 62  SFTRIIIVLAILRQALGLQQSPPNRVLVGIALILTIFIMRPVGDKIYKEAYLPYDQGKIE 121

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              AI     P   FM   TRE DL   + +A+     T +   + + + +L+P+F++SE
Sbjct: 122 LMEAISIAKVPLTRFMLAQTRETDLEQMLKIANEP---THMKTAEEVPFFVLMPAFVLSE 178

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +F+IGFLI LPFL+ID++VA+++M+MGMMML P  ISLPFK++ FVL+DGW++ V  
Sbjct: 179 LKTAFQIGFLIFLPFLVIDLVVASVLMSMGMMMLSPLIISLPFKLMIFVLVDGWAMTVST 238

Query: 241 LVKSF 245
           L  SF
Sbjct: 239 LTASF 243


>gi|149203108|ref|ZP_01880079.1| flagellar biosynthetic protein FliP [Roseovarius sp. TM1035]
 gi|149143654|gb|EDM31690.1| flagellar biosynthetic protein FliP [Roseovarius sp. TM1035]
          Length = 245

 Score =  186 bits (472), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 102/236 (43%), Positives = 151/236 (63%), Gaps = 3/236 (1%)

Query: 11  LVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
           L    L     +    +++  D S+S   ++   + T+LS+AP + IMVTCFP  + V S
Sbjct: 13  LFLGALATGAPAQDLTLSLGDDASLSARTLQLIALITVLSLAPGIAIMVTCFPFVVTVLS 72

Query: 71  ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
           ILR G+G+   PPN++I+SLALF+TF+VM P   ++ E GI+PL+  +++   AI+R   
Sbjct: 73  ILRQGIGLQQSPPNMLIVSLALFLTFFVMEPVFTQAWETGIEPLLQERLSPDLAIERTLA 132

Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
           PF VFM       D      +A      T ++        ILIPSFM+SE+ R+F+IGFL
Sbjct: 133 PFRVFMLGRV---DPDTLATIAALRPETTTLSAGPDAPLSILIPSFMLSEIARAFQIGFL 189

Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           + LPFLIID++VA I+M+MGMMM+PP  +SLPFK+ FFV+ DGW+L+ E+LV+ ++
Sbjct: 190 VFLPFLIIDLVVAAILMSMGMMMVPPAIVSLPFKLAFFVIADGWTLIAESLVRGYL 245


>gi|197122898|ref|YP_002134849.1| flagellar biosynthesis protein FliP [Anaeromyxobacter sp. K]
 gi|196172747|gb|ACG73720.1| flagellar biosynthetic protein FliP [Anaeromyxobacter sp. K]
          Length = 236

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 90/229 (39%), Positives = 137/229 (59%), Gaps = 5/229 (2%)

Query: 17  VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
             A  +    + I  +   S   V+ F + T LS A  LL+ VT F R +IV S LR  +
Sbjct: 12  SVASPAAEGALQISVNGGGSA-PVKLFLVLTALSFATALLVSVTSFTRIVIVLSFLRQAL 70

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G   VPPN V+I LAL ++F+VMSPT  R     + P ++++I +  A++R + P   FM
Sbjct: 71  GTPQVPPNQVLIGLALVLSFFVMSPTATRVYADALGPYLDDRIGQAEALERASGPVREFM 130

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
              TR++DL+LF +++ +          D I   I +P+FMISEL  +F +G  + +P L
Sbjct: 131 LRQTRDQDLALFYEISATPRP----ASGDAIPMSIAVPAFMISELTTAFRMGLFLYVPLL 186

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++D++V+ I+M+MGMMM+PPT I+LP K+  FV+ DGW L+V  L +SF
Sbjct: 187 LVDLLVSAILMSMGMMMVPPTLIALPVKIGLFVMADGWRLVVGALARSF 235


>gi|126738561|ref|ZP_01754266.1| flagellar biosynthetic protein FliP [Roseobacter sp. SK209-2-6]
 gi|126720360|gb|EBA17066.1| flagellar biosynthetic protein FliP [Roseobacter sp. SK209-2-6]
          Length = 247

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 98/227 (43%), Positives = 144/227 (63%), Gaps = 3/227 (1%)

Query: 19  AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           A  +    +++    SIS   ++   + T+LS+AP +LIM+TCFP  + V SILR G+G+
Sbjct: 22  AALAQELSLSLADGQSISARSIQLILLITVLSLAPGMLIMITCFPFLVTVLSILRQGLGL 81

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
              PPN+++ISLALF+T++VM P    + + GI PL+  QI   T + R  EPF  FM N
Sbjct: 82  QQAPPNMLMISLALFLTYFVMEPVFTEAWQTGISPLIEEQIDVETGLIRSLEPFRGFMAN 141

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
                D   F  +A        I         +L+PSF++SE+ R+F+IGFL+ LPFL+I
Sbjct: 142 RL---DPDTFYAIADLRPATKGIDPTVDAPISVLVPSFLLSEIARAFQIGFLVFLPFLVI 198

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           D++VA ++M+MGMMM+PP  +SLPFK+ FFV+ DGWSL+   LV+S+
Sbjct: 199 DLVVAAVLMSMGMMMVPPAVVSLPFKLAFFVVADGWSLIATALVRSY 245


>gi|283784010|ref|YP_003363875.1| lateral flagellar export/assembly protein [Citrobacter rodentium
           ICC168]
 gi|282947464|emb|CBG87011.1| lateral flagellar export/assembly protein [Citrobacter rodentium
           ICC168]
          Length = 252

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 90/246 (36%), Positives = 145/246 (58%), Gaps = 9/246 (3%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           +      ALF ++P    A+     ++N+    +   +   ++   + T++ + P L++M
Sbjct: 7   LTLALGIALFALSP-FACAQGGEIPLLNVVTHGASQEYSVKIQVLILMTLVGLLPTLVLM 65

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +TCF RFIIV S+LR  +G+   PPN ++I +AL +T  VM P      +  + P  N+Q
Sbjct: 66  MTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALCLTMLVMRPIWLNIYDRAVVPFENDQ 125

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           +T + A+   A P   FM   T +K ++  M +A       D       +  I++P++++
Sbjct: 126 MTLSDALSTAATPLKRFMLAQTNKKAMAQIMTIADVKGDAADQ------DLTIVVPAYVL 179

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P  +SLPFK++ FVLIDGWSL V
Sbjct: 180 SELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWSLTV 239

Query: 239 ENLVKS 244
             L  S
Sbjct: 240 GTLTSS 245


>gi|89895724|ref|YP_519211.1| flagellar biosynthesis protein FliP [Desulfitobacterium hafniense
           Y51]
 gi|89335172|dbj|BAE84767.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 236

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 105/236 (44%), Positives = 152/236 (64%), Gaps = 6/236 (2%)

Query: 10  FLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVF 69
            LV  + V A     D     A+ + ST  +       +LSIAP +L+++T F R IIV 
Sbjct: 6   ILVNTDAVLAAGLTLDFGTTTAEQTSSTLQILLLLT--VLSIAPAILVLMTSFTRTIIVL 63

Query: 70  SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129
           S +R  +G   +PPN V+I L+LF+TF+VM+PT +      +QP M NQIT+  A+Q+  
Sbjct: 64  SFVRNALGTQQLPPNQVLIGLSLFLTFFVMAPTWNEINTQALQPYMQNQITQAEALQQAE 123

Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189
            P   FM   TREKDL+LF+ +A      T       I   +LIP+F+ISEL+ +F++GF
Sbjct: 124 APLRQFMFEQTREKDLTLFVGLARMEQPQTYG----DIPTYVLIPAFVISELKTAFQMGF 179

Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            I +PF++IDM+VA+++M+MGMMMLPP  +SLPFK++ FVL+DGW L+V++LV SF
Sbjct: 180 AIFIPFMVIDMLVASVLMSMGMMMLPPMMVSLPFKILLFVLVDGWHLVVQSLVTSF 235


>gi|260432140|ref|ZP_05786111.1| flagellar biosynthetic protein FliP [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415968|gb|EEX09227.1| flagellar biosynthetic protein FliP [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 243

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 99/245 (40%), Positives = 151/245 (61%), Gaps = 3/245 (1%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           M+R  F+ +           S+    +++    SIS   ++   + T+LS+AP L IM+T
Sbjct: 1   MMRNGFWLILAALLLTPALASAQELSLSLGEGGSISARTIQLILLITVLSLAPGLAIMIT 60

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
           CFP  + V +ILR G+G+   PPN++I+SLALF+T++VM P   ++ E GI+P++   + 
Sbjct: 61  CFPFLVTVLAILRQGIGLQQSPPNMLIVSLALFLTYFVMEPVFTQAWETGIRPMVEETME 120

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A++R   PF  FM       D   F  MA        +  +      +L+PSFM+SE
Sbjct: 121 VEPALERALVPFREFMAARL---DAETFQAMAALRPDGEAMELSPQAPLSVLMPSFMLSE 177

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           + R+F+IGFLI LPFLIID++VA ++M+MGMMM+PP ++SLPFK+ FFV+ DGWSL+   
Sbjct: 178 IARAFQIGFLIFLPFLIIDLVVAAVLMSMGMMMVPPATVSLPFKLAFFVIADGWSLIAGA 237

Query: 241 LVKSF 245
           LV+S+
Sbjct: 238 LVRSY 242


>gi|299066546|emb|CBJ37736.1| Flagellar biosynthetic protein FliP [Ralstonia solanacearum CMR15]
          Length = 227

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 94/215 (43%), Positives = 141/215 (65%), Gaps = 4/215 (1%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
              + +   +R     T+L++ P LL+ VT F R IIV S+LR G+GM   PPN  +I L
Sbjct: 16  TPAADTAQALRIVLGLTVLAVLPALLVSVTSFLRIIIVLSMLRHGLGMQETPPNTALIGL 75

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           ALF+T + MSPTL++      QP M   I+   A ++ + P   FM   TRE+DL+L ++
Sbjct: 76  ALFLTLFTMSPTLEQINRQAFQPFMAGTISMEQAYEKGSAPLRDFMVRQTREQDLALMVE 135

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           ++ +          D I    LIP++M+SELR +F+IGF++ LPFL+ID++V++I+MA+G
Sbjct: 136 LSKAKTP----QSMDDISNVQLIPAYMLSELRTAFQIGFVVFLPFLLIDLVVSSILMALG 191

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMM+PP+++SLP KV+ FVL+DGW LL++ LV SF
Sbjct: 192 MMMMPPSTVSLPLKVLMFVLMDGWGLLLKALVGSF 226


>gi|327254531|gb|EGE66147.1| flagellar biosynthetic protein FliP [Escherichia coli STEC_7v]
          Length = 250

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 83/214 (38%), Positives = 132/214 (61%), Gaps = 6/214 (2%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
            +    +  ++   + T++ + P +++M+TCF RFIIV S+LR  +G+   PPN ++I +
Sbjct: 36  GNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGI 95

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           AL +T  VM P      +  + P  N+QIT T A+   A P   FM   T +K ++  M 
Sbjct: 96  ALSLTLLVMRPVWLNIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMT 155

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           +  +     D       +  I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMG
Sbjct: 156 IGGAKGNAADQ------DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMG 209

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           MMML P  +SLPFK++ FVLIDGWSL +  L  S
Sbjct: 210 MMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243


>gi|126176172|ref|YP_001052321.1| flagellar biosynthesis protein FliP [Shewanella baltica OS155]
 gi|125999377|gb|ABN63452.1| flagellar biosynthetic protein FliP [Shewanella baltica OS155]
          Length = 244

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 86/245 (35%), Positives = 142/245 (57%), Gaps = 3/245 (1%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           ++R    ++ L  P+ + ++      ++   D       +    + T +S  PI+L+M+T
Sbjct: 2   IVRVLLLSILLFAPQALASEGLTLFTLDSAQDSQAVNIKLEILALMTAISFLPIMLMMLT 61

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R IIV +ILR  +G+   PPN V++ +AL +T ++M P  D+  +    P    +I 
Sbjct: 62  SFTRIIIVLAILRQALGLQQSPPNRVLVGIALILTIFIMRPVGDKIYKEAYLPYDQGKIE 121

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A+     P   FM   TR  DL   + +A+     T +   + + + +L+P+F++SE
Sbjct: 122 LMEAVSIAKVPLTRFMLAQTRATDLEQMLKIANEP---THMKTAEEVPFFVLMPAFVLSE 178

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +F+IGFL+ LPFL+ID++VA+++M+MGMMML P  ISLPFK++ FVL+DGWS+ V  
Sbjct: 179 LKTAFQIGFLLFLPFLVIDLVVASVLMSMGMMMLSPLIISLPFKLMVFVLVDGWSMTVST 238

Query: 241 LVKSF 245
           L  SF
Sbjct: 239 LTASF 243


>gi|119947195|ref|YP_944875.1| flagellar biosynthesis protein FliP [Psychromonas ingrahamii 37]
 gi|119865799|gb|ABM05276.1| flagellar biosynthetic protein FliP [Psychromonas ingrahamii 37]
          Length = 245

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 86/235 (36%), Positives = 134/235 (57%), Gaps = 7/235 (2%)

Query: 13  TPELVFAKSSLH--DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
           +P   FA   L    + + P     S   ++   + T LS  P  ++M TCF R IIV +
Sbjct: 15  SPFNSFASEGLSVLSITDTPTGQDYSVK-LQILILMTALSFIPAFILMCTCFTRIIIVLA 73

Query: 71  ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
           ILR  +G+   PPN V++ +AL ++  +M P      +    P     I+  TA     +
Sbjct: 74  ILRQALGLQQSPPNQVLLGIALALSILIMKPVWTDVYDNAFVPYDAGDISLLTAASIAEK 133

Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
           P   FM   T    L   M++A       +  K + I + I++P+F+ISEL+ +F+IGF+
Sbjct: 134 PVREFMLRQTHSSSLEQMMNIAG----EDENVKPEDISFAIILPAFVISELKTAFQIGFM 189

Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           + +PFLIID++VA+++M+MGMMML P  +SLPFK++ FVL+DGW++LV +L  SF
Sbjct: 190 LFMPFLIIDLVVASVLMSMGMMMLSPLIVSLPFKLLAFVLVDGWTMLVGSLSTSF 244


>gi|218703506|ref|YP_002411025.1| flagellar biosynthesis protein FliP [Escherichia coli UMN026]
 gi|293403337|ref|ZP_06647428.1| fliP [Escherichia coli FVEC1412]
 gi|298378948|ref|ZP_06988829.1| fliP [Escherichia coli FVEC1302]
 gi|300898060|ref|ZP_07116429.1| flagellar biosynthetic protein FliP [Escherichia coli MS 198-1]
 gi|59889762|emb|CAH19117.1| Lateral flagellar export/assembly protein (FliP-like) [Escherichia
           coli]
 gi|218430603|emb|CAR11469.1| Lateral flagellar export/assembly protein, FliP-like [Escherichia
           coli UMN026]
 gi|284920026|emb|CBG33082.1| lateral flagellar export/assembly protein (FliP-like) [Escherichia
           coli 042]
 gi|291429190|gb|EFF02210.1| fliP [Escherichia coli FVEC1412]
 gi|298280061|gb|EFI21565.1| fliP [Escherichia coli FVEC1302]
 gi|300358238|gb|EFJ74108.1| flagellar biosynthetic protein FliP [Escherichia coli MS 198-1]
          Length = 250

 Score =  185 bits (471), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 83/214 (38%), Positives = 132/214 (61%), Gaps = 6/214 (2%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
            +    +  ++   + T++ + P +++M+TCF RFIIV S+LR  +G+   PPN ++I +
Sbjct: 36  GNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGI 95

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           AL +T  VM P      +  + P  N+QIT T A+   A P   FM   T +K ++  M 
Sbjct: 96  ALSLTMLVMRPVWLNIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMT 155

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           +  +     D       +  I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMG
Sbjct: 156 IGGAKGNAADQ------DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMG 209

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           MMML P  +SLPFK++ FVLIDGWSL +  L  S
Sbjct: 210 MMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243


>gi|5679188|gb|AAD46902.1|AF160974_5 HrcR homolog [Xanthomonas campestris pv. glycines]
          Length = 201

 Score =  185 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 65/200 (32%), Positives = 114/200 (57%), Gaps = 2/200 (1%)

Query: 48  ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107
           +L + P   ++VT + + ++V  +LR  +G+  VPPN+V+  +AL ++ +VM+P    + 
Sbjct: 1   MLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF 60

Query: 108 EMGIQPLMNNQITETTA--IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165
           +   Q              +    EPF  F+  +TRE++ + FM  A             
Sbjct: 61  KAAAQNYGAGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLK 120

Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225
             +  +L P+F +SEL  +F IGFL+ L F++ID++VA  +MAMG+  + PT++++PFK+
Sbjct: 121 SDDLLVLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKL 180

Query: 226 IFFVLIDGWSLLVENLVKSF 245
           + FV +DGWS+L+  LV S+
Sbjct: 181 LLFVAMDGWSMLIHGLVLSY 200


>gi|167626138|ref|YP_001676432.1| flagellar biosynthesis protein FliP [Shewanella halifaxensis
           HAW-EB4]
 gi|167356160|gb|ABZ78773.1| flagellar biosynthetic protein FliP [Shewanella halifaxensis
           HAW-EB4]
          Length = 242

 Score =  185 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 89/245 (36%), Positives = 133/245 (54%), Gaps = 4/245 (1%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           M R     +   +     +       +         +  +    + T+LS  P LL+M+T
Sbjct: 1   MWRVLLVFVLSFSSAAYASDGLTLFSLADGDKTQAVSVKLEILALMTVLSFLPALLMMLT 60

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R I+V +ILR  +G+   PPN V+I +AL MT ++M P      +    P    QI 
Sbjct: 61  SFTRIIVVLAILRQALGLQQSPPNKVLIGIALVMTIFIMRPVGQEIYDDAFLPYDMGQIE 120

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A+ R   P   FM   TRE DL   + +A            D I + +L+P+F++SE
Sbjct: 121 LPEAVARGEVPLRQFMLAQTRETDLEQMLKIADEPI----TLTADEIPFFVLMPAFVLSE 176

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +F+IGFL+ LPFL+ID++VA+++M+MGMMML P  ISLPFK++ FVL+DGWS+ V  
Sbjct: 177 LKTAFQIGFLLFLPFLVIDLVVASVLMSMGMMMLSPLIISLPFKLMVFVLVDGWSMTVST 236

Query: 241 LVKSF 245
           LV S+
Sbjct: 237 LVASY 241


>gi|294339800|emb|CAZ88163.1| Flagellar biosynthetic protein FliP [Thiomonas sp. 3As]
          Length = 255

 Score =  185 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 96/226 (42%), Positives = 149/226 (65%), Gaps = 6/226 (2%)

Query: 23  LHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
           L    + PA    + +   V+T    T L   P +L+M+T F R IIV S+L+  +G  +
Sbjct: 33  LPAFTSSPAAGGGTEYSLSVQTLLFMTALVFLPAMLLMMTAFTRIIIVLSLLKQALGTTT 92

Query: 81  VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
           VPP+ VI+ L+LF+TF+VMSP L++  ++ I+PLM+NQIT   A+Q  A P   FM   T
Sbjct: 93  VPPSQVIVGLSLFLTFFVMSPVLNQVNDVAIKPLMDNQITMQQALQMGAAPLRTFMLGQT 152

Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
           R++DL+LF+ ++        + K       +L+P+F+ SEL+ +F+IGF+I +PFLIIDM
Sbjct: 153 RQEDLALFVKLSGHK----ALDKPADTPMSLLVPAFVTSELKTAFQIGFVIFIPFLIIDM 208

Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +VA ++M+MGMMML P ++S P K++ FVL+ GW L++ +L++SFI
Sbjct: 209 VVAAVLMSMGMMMLSPVTVSFPLKLMLFVLVGGWELVIGSLMQSFI 254


>gi|163802009|ref|ZP_02195905.1| translocation protein in type III secretion [Vibrio sp. AND4]
 gi|159174150|gb|EDP58958.1| translocation protein in type III secretion [Vibrio sp. AND4]
          Length = 216

 Score =  185 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 72/208 (34%), Positives = 126/208 (60%), Gaps = 2/208 (0%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +       +L++ P + +M T F +  +VFS+LR  +G+  +PPN+ +  LA+ ++ ++M
Sbjct: 8   LNLIVSLALLALIPFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIM 67

Query: 100 SPTLDRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
           +P    + +   Q    + +  T    I+   +P+  F++ + RE + + F D A +   
Sbjct: 68  APVGFETYDYVKQHDISLEDSETIEGLIESGLQPYREFLKKHIRETESAFFTDAAKTLWP 127

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
              + + +     +L+P+F +SEL R+FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ P 
Sbjct: 128 QKYVDRLESDSLLLLLPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPM 187

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +ISLPFK++ FVL+DGW+ L   LV S+
Sbjct: 188 TISLPFKLLLFVLLDGWTKLTHGLVLSY 215


>gi|170684182|ref|YP_001742352.1| flagellar biosynthesis protein FliP [Escherichia coli SMS-3-5]
 gi|170521900|gb|ACB20078.1| lateral flagellar export/assembly protein LfiP [Escherichia coli
           SMS-3-5]
          Length = 250

 Score =  185 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 82/214 (38%), Positives = 131/214 (61%), Gaps = 6/214 (2%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
            +    +  ++   + T++ + P +++M+TCF RFIIV S+LR  +G+   PPN ++I +
Sbjct: 36  GNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGI 95

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           AL +T  VM P      +  + P  N+QIT T A+   A P   FM   T +K ++  M 
Sbjct: 96  ALSLTMLVMRPVWLNIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMT 155

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           +  +             +  I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMG
Sbjct: 156 IGGAKGNAA------DQDLTIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMG 209

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           MMML P  +SLPFK++ FVLIDGWSL +  L  S
Sbjct: 210 MMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243


>gi|323191516|gb|EFZ76777.1| flagellar biosynthetic protein FliP [Escherichia coli RN587/1]
          Length = 250

 Score =  185 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 83/214 (38%), Positives = 132/214 (61%), Gaps = 6/214 (2%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
            +    +  ++   + T++ + P +++M+TCF RFIIV S+LR  +G+   PPN ++I +
Sbjct: 36  GNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGI 95

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           AL +T  VM P      +  + P  N+QIT T A+   A P   FM   T +K ++  M 
Sbjct: 96  ALSLTLLVMRPIWLNIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMT 155

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           +  +     D       +  I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMG
Sbjct: 156 IGGAKGNAADQ------DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMG 209

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           MMML P  +SLPFK++ FVLIDGWSL +  L  S
Sbjct: 210 MMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243


>gi|306813325|ref|ZP_07447518.1| flagellar biosynthesis protein FliP [Escherichia coli NC101]
 gi|305854088|gb|EFM54527.1| flagellar biosynthesis protein FliP [Escherichia coli NC101]
          Length = 250

 Score =  185 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 83/214 (38%), Positives = 132/214 (61%), Gaps = 6/214 (2%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
            +    +  ++   + T++ + P +++M+TCF RFIIV S+LR  +G+   PPN ++I +
Sbjct: 36  GNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGI 95

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           AL +T  VM P      +  + P  N+QIT T A+   A P   FM   T +K ++  M 
Sbjct: 96  ALSLTLLVMRPIWLNIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMT 155

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           +  +     D       +  I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMG
Sbjct: 156 IGGAKGNAADQ------DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMG 209

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           MMML P  +SLPFK++ FVLIDGWSL +  L  S
Sbjct: 210 MMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243


>gi|157737241|ref|YP_001489924.1| flagellar biosynthesis protein FliP [Arcobacter butzleri RM4018]
 gi|157699095|gb|ABV67255.1| flagellar biosynthetic protein FliP [Arcobacter butzleri RM4018]
          Length = 241

 Score =  185 bits (470), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 98/244 (40%), Positives = 144/244 (59%), Gaps = 4/244 (1%)

Query: 2   IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
           +R  F  L             ++  +            +    I  +L +AP LL+MVT 
Sbjct: 1   MRIIFTVLLFSIFANAADAPMINLSVAAIEQPVQFVRTINIAIILALLVLAPTLLLMVTS 60

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F R IIVFS+LR  MG+   PP+ +IISL+L +T ++M P   ++ +  I P M+ +I  
Sbjct: 61  FTRLIIVFSLLRQAMGLQQTPPSQIIISLSLILTIFIMEPYAKKAWDDAIVPYMDEKIGY 120

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
             A  +   PF  FM  NTRE DL+LF  +    +        + +   +L+P+F++SEL
Sbjct: 121 EVAFDKGVAPFKEFMIKNTREADLALFYRIKKEPNPK----NIEAVPLTLLMPAFIVSEL 176

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
           R +FEIGFLI LPFL+ID+IVA+I+M++GMMMLPP  ISLP K+IFF+++DGW L++ NL
Sbjct: 177 RTAFEIGFLIFLPFLVIDIIVASILMSLGMMMLPPVMISLPIKIIFFIVVDGWQLIIGNL 236

Query: 242 VKSF 245
            +SF
Sbjct: 237 AQSF 240


>gi|256020209|ref|ZP_05434074.1| flagellar biosynthesis protein FliP [Shigella sp. D9]
 gi|260853448|ref|YP_003227339.1| putative lateral flagellar biosynthesis protein [Escherichia coli
           O26:H11 str. 11368]
 gi|260866394|ref|YP_003232796.1| putative lateral flagellar biosynthesis protein [Escherichia coli
           O111:H- str. 11128]
 gi|307315216|ref|ZP_07594795.1| flagellar biosynthetic protein FliP [Escherichia coli W]
 gi|332281371|ref|ZP_08393784.1| lateral flagellar export/assembly protein [Shigella sp. D9]
 gi|257752097|dbj|BAI23599.1| predicted lateral flagellar biosynthesis protein [Escherichia coli
           O26:H11 str. 11368]
 gi|257762750|dbj|BAI34245.1| predicted lateral flagellar biosynthesis protein [Escherichia coli
           O111:H- str. 11128]
 gi|306905397|gb|EFN35934.1| flagellar biosynthetic protein FliP [Escherichia coli W]
 gi|315059469|gb|ADT73796.1| Lateral flagellar export/assembly protein [Escherichia coli W]
 gi|323158013|gb|EFZ44114.1| flagellar biosynthetic protein FliP [Escherichia coli EPECa14]
 gi|323178514|gb|EFZ64092.1| flagellar biosynthetic protein FliP [Escherichia coli 1180]
 gi|323181527|gb|EFZ66947.1| flagellar biosynthetic protein FliP [Escherichia coli 1357]
 gi|323379973|gb|ADX52241.1| flagellar biosynthetic protein FliP [Escherichia coli KO11]
 gi|332103723|gb|EGJ07069.1| lateral flagellar export/assembly protein [Shigella sp. D9]
          Length = 250

 Score =  185 bits (470), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 83/214 (38%), Positives = 132/214 (61%), Gaps = 6/214 (2%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
            +    +  ++   + T++ + P +++M+TCF RFIIV S+LR  +G+   PPN ++I +
Sbjct: 36  GNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGI 95

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           AL +T  VM P      +  + P  N+QIT T A+   A P   FM   T +K ++  M 
Sbjct: 96  ALSLTMLVMRPIWLNIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMT 155

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           +  +     D       +  I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMG
Sbjct: 156 IGGAKGHAADQ------DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMG 209

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           MMML P  +SLPFK++ FVLIDGWSL +  L  S
Sbjct: 210 MMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243


>gi|159045807|ref|YP_001534601.1| flagellar biosynthesis protein FliP [Dinoroseobacter shibae DFL 12]
 gi|157913567|gb|ABV95000.1| flagellar biosynthesis protein FliP [Dinoroseobacter shibae DFL 12]
          Length = 242

 Score =  185 bits (470), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 97/228 (42%), Positives = 147/228 (64%), Gaps = 1/228 (0%)

Query: 19  AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           +  +    +N+  + S+S    +   + T+LSIAP L IM+TCFP  + V SILR G+G+
Sbjct: 16  SAGAQELAINLGDETSLSARTFQIIALITVLSIAPGLAIMITCFPFMVTVLSILRQGIGL 75

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
              PPN++IISLALF+T++VM P    +   GIQP+++  +      +   EPF  FM+ 
Sbjct: 76  QQSPPNMLIISLALFLTYFVMDPVFREAWSRGIQPMVDGAVDMEEGFRAALEPFIRFMQA 135

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
            T  + L+   ++   +       + D     +LIPSF++SE+ ++F+IGFLI LPFLII
Sbjct: 136 RTDPETLARLGNLRMETAGVAPF-ELDAPPISVLIPSFLLSEIEKAFQIGFLIFLPFLII 194

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           D+IVA I+M+MGMMM+PP  +SLPFK+ FFV+ DGW+LL E L++S++
Sbjct: 195 DLIVAAILMSMGMMMVPPAIVSLPFKLAFFVVADGWTLLSEALLRSYM 242


>gi|99082784|ref|YP_614938.1| flagellar biosynthesis protein FliP [Ruegeria sp. TM1040]
 gi|99039064|gb|ABF65676.1| Flagellar biosynthetic protein fliP [Ruegeria sp. TM1040]
          Length = 248

 Score =  185 bits (470), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 101/236 (42%), Positives = 149/236 (63%), Gaps = 6/236 (2%)

Query: 10  FLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVF 69
            L  P++  A+      +N+    SIS   ++   + T+LS+AP LL+M+TCFP  I V 
Sbjct: 16  LLAQPQVALAQEL---SLNLADGQSISARTIQLILLITVLSVAPGLLVMLTCFPFLITVL 72

Query: 70  SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129
           SILR  +G+   PPN+++ISLA+F+T++VM P    + E GI PL++ ++    A++R  
Sbjct: 73  SILRQAIGLQQAPPNMLMISLAMFLTYFVMEPVFTEAWETGIAPLIDEELEVVPALERAV 132

Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189
           EPF VFM N     D   +  +A           +      +LIPSFM+SE+ R+FEIGF
Sbjct: 133 EPFRVFMANRL---DPDTYYAIADLRPGTEGSDPSPESPLSVLIPSFMLSEITRAFEIGF 189

Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           L+ LPFL+ID++ A I+M+MGMMM+PP  +SLPFK+ FFV+ DGWSL+   LV+S+
Sbjct: 190 LVFLPFLVIDLVTAAILMSMGMMMVPPALVSLPFKLAFFVVADGWSLIASALVRSY 245


>gi|304412524|ref|ZP_07394130.1| flagellar biosynthetic protein FliP [Shewanella baltica OS183]
 gi|307307183|ref|ZP_07586921.1| flagellar biosynthetic protein FliP [Shewanella baltica BA175]
 gi|304349166|gb|EFM13578.1| flagellar biosynthetic protein FliP [Shewanella baltica OS183]
 gi|306910422|gb|EFN40853.1| flagellar biosynthetic protein FliP [Shewanella baltica BA175]
          Length = 244

 Score =  185 bits (470), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 86/245 (35%), Positives = 143/245 (58%), Gaps = 3/245 (1%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           ++R    ++ L+ P+ + ++      ++   D       +    + T +S  PI+L+M+T
Sbjct: 2   IVRVLLLSILLLAPQALASEGLTLFTLDSAQDSQAVNIKLEILALMTAISFLPIMLMMLT 61

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R IIV +ILR  +G+   PPN V++ +AL +T ++M P  D+  +    P    +I 
Sbjct: 62  SFTRIIIVLAILRQALGLQQSPPNRVLVGIALILTIFIMRPVGDKIYKEAYLPYDQGKIE 121

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A+     P   FM   TR  DL   + +A+     T +   + + + +L+P+F++SE
Sbjct: 122 LMEAVSIAKVPLTRFMLAQTRATDLEQMLKIANEP---THMKTAEEVPFFVLMPAFVLSE 178

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +F+IGFL+ LPFL+ID++VA+++M+MGMMML P  ISLPFK++ FVL+DGWS+ V  
Sbjct: 179 LKTAFQIGFLLFLPFLVIDLVVASVLMSMGMMMLSPLIISLPFKLMVFVLVDGWSMTVST 238

Query: 241 LVKSF 245
           L  SF
Sbjct: 239 LTASF 243


>gi|126463729|ref|YP_001044843.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides ATCC
           17029]
 gi|126105393|gb|ABN78071.1| flagellar biosynthetic protein FliP [Rhodobacter sphaeroides ATCC
           17029]
          Length = 238

 Score =  185 bits (469), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 91/226 (40%), Positives = 140/226 (61%), Gaps = 5/226 (2%)

Query: 20  KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79
            ++    +++    S++   V+   + T+LS+ P L +M+TCFP  + V SILR  +G+ 
Sbjct: 17  ATAQSLSLDLGDGGSLTARSVQLIAVITLLSLVPALAMMITCFPFIVTVLSILRQAIGLQ 76

Query: 80  SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139
             PPN++I+SLALF+T+YVM P    +   GI PL  N++    A+   A PF  FM   
Sbjct: 77  QAPPNMLIVSLALFLTWYVMDPVFTEAWTRGIGPLTRNELDLPQALAAAAVPFRGFMTGR 136

Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
                L+     A  + R           + +L+PSF++SE++R+FEIGFLI LPFLIID
Sbjct: 137 IDPDTLA-----ALQALRPGPAAPPSEASFSVLVPSFLLSEIQRAFEIGFLIYLPFLIID 191

Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++V+ ++M+MGMMM+PP  +S+PFK+ FFV+ DGWSL+   LV+S+
Sbjct: 192 LVVSAVLMSMGMMMVPPAVVSMPFKLAFFVVADGWSLISGALVRSY 237


>gi|331645397|ref|ZP_08346501.1| flagellar biosynthetic protein FliP [Escherichia coli M605]
 gi|331045559|gb|EGI17685.1| flagellar biosynthetic protein FliP [Escherichia coli M605]
          Length = 250

 Score =  185 bits (469), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 82/214 (38%), Positives = 130/214 (60%), Gaps = 6/214 (2%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
            +    +  ++   + T++ + P +++M+TCF R IIV S+LR  +G+   PPN ++I +
Sbjct: 36  GNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRLIIVLSLLRQALGLQQTPPNRILIGI 95

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           AL +T  VM P      +  I P  N+QIT T A+   A P   FM   T +K ++  M 
Sbjct: 96  ALSLTLLVMRPIWLNIYDHAIVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMT 155

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           +  +             +  I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMG
Sbjct: 156 IGGAKGNAA------DQDLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMG 209

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           MMML P  +SLPFK++ FVLIDGWSL +  L  S
Sbjct: 210 MMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243


>gi|315636956|ref|ZP_07892180.1| flagellar biosynthetic protein FliP [Arcobacter butzleri JV22]
 gi|315478786|gb|EFU69495.1| flagellar biosynthetic protein FliP [Arcobacter butzleri JV22]
          Length = 241

 Score =  185 bits (469), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 98/244 (40%), Positives = 145/244 (59%), Gaps = 4/244 (1%)

Query: 2   IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
           ++  F  LF            ++  +            +    I  +L +AP LL+MVT 
Sbjct: 1   MKIIFTVLFFSIFANAADAPMINLSVAAIEQPVQFVRTINIAIILALLVLAPTLLLMVTS 60

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F R IIVFS+LR  MG+   PP+ +IISL+L +T ++M P   ++ +  I P M+ +I  
Sbjct: 61  FTRLIIVFSLLRQAMGLQQTPPSQIIISLSLILTIFIMEPYAKKAWDDAIVPYMDEKIGY 120

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
             A  +   PF  FM  NTRE DL+LF  +    +        + +   +L+P+F++SEL
Sbjct: 121 EVAFDKGVAPFKEFMIKNTREADLALFYRIKKEPNPK----NIEAVPLTLLMPAFIVSEL 176

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
           R +FEIGFLI LPFL+ID+IVA+I+M++GMMMLPP  ISLP K+IFF+++DGW L++ NL
Sbjct: 177 RTAFEIGFLIFLPFLVIDIIVASILMSLGMMMLPPVMISLPIKIIFFIVVDGWQLIIGNL 236

Query: 242 VKSF 245
            +SF
Sbjct: 237 AQSF 240


>gi|331666527|ref|ZP_08367401.1| flagellar biosynthetic protein FliP [Escherichia coli TA271]
 gi|331065751|gb|EGI37635.1| flagellar biosynthetic protein FliP [Escherichia coli TA271]
          Length = 250

 Score =  185 bits (469), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 81/214 (37%), Positives = 131/214 (61%), Gaps = 6/214 (2%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
            +    +  ++   + T++ + P +++M+TCF RFIIV S+LR  +G+   PPN ++I +
Sbjct: 36  GNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGI 95

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           AL +T  VM P      +  + P  N+QI  + A+   A P   FM   T +K ++  M 
Sbjct: 96  ALSLTMLVMRPIWLNIYDHAVVPFENDQIPLSDALSTAATPLKRFMLAQTDKKAMAQIMT 155

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           +  +     D       +  I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMG
Sbjct: 156 IGGAKGHAADQ------DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMG 209

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           MMML P  +SLPFK++ FVLIDGWSL +  L  S
Sbjct: 210 MMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243


>gi|126734123|ref|ZP_01749870.1| flagellar biosynthetic protein FliP [Roseobacter sp. CCS2]
 gi|126716989|gb|EBA13853.1| flagellar biosynthetic protein FliP [Roseobacter sp. CCS2]
          Length = 243

 Score =  185 bits (469), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 93/244 (38%), Positives = 142/244 (58%), Gaps = 3/244 (1%)

Query: 2   IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
           +R       ++   L     +    +    D S++T  ++   + T+LS+ P + IMVTC
Sbjct: 1   MRRALIIAAVLMVALSGPAIAQEVSITFDDDGSLATRSIQLLILITVLSLVPGIAIMVTC 60

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           FP  I VF+ILR  +G+   PPN++I+SLALF+T++VM P    +   GI PL+  QI  
Sbjct: 61  FPFIITVFAILRQAIGLQQSPPNMLIVSLALFLTYFVMEPVFREAWSNGIDPLIQGQIAL 120

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
                R  EP  VFM       D   F  +A      +           I++PSF++SE+
Sbjct: 121 EEGFVRTIEPLQVFMLTRI---DPDTFTALADLRPDVSGNGPASDAPLSIVVPSFLLSEM 177

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
            R+F++GFLI +PFLIID++VA ++M+MGMMM+PP  +SLPFK+ FFV+ DGW+L+  +L
Sbjct: 178 ERAFQVGFLIFMPFLIIDLVVAAVLMSMGMMMVPPAIVSLPFKLAFFVVADGWTLIATSL 237

Query: 242 VKSF 245
           V+ +
Sbjct: 238 VQGY 241


>gi|293408348|ref|ZP_06652187.1| fliP [Escherichia coli B354]
 gi|291471526|gb|EFF14009.1| fliP [Escherichia coli B354]
          Length = 250

 Score =  185 bits (469), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 82/214 (38%), Positives = 131/214 (61%), Gaps = 6/214 (2%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
            +    +  ++   + T++ + P +++M+TCF RFIIV S+LR  +G+   PPN ++I +
Sbjct: 36  GNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGI 95

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           AL +T  VM P      +  + P  N+QIT T A+   A P   FM   T +K ++  M 
Sbjct: 96  ALSLTMLVMRPIWLNIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMT 155

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           +  +             +  I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMG
Sbjct: 156 IGGAKGNAA------DQDLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMG 209

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           MMML P  +SLPFK++ FVLIDGWSL +  L  S
Sbjct: 210 MMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243


>gi|212637763|ref|YP_002314288.1| flagellar biosynthesis protein FliP [Shewanella piezotolerans WP3]
 gi|212559247|gb|ACJ31701.1| Flagellar transport protein FliP [Shewanella piezotolerans WP3]
          Length = 242

 Score =  185 bits (469), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 91/245 (37%), Positives = 133/245 (54%), Gaps = 4/245 (1%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           M R     L   +             +   A        +    + T+LS  P LL+M+T
Sbjct: 1   MWRVLLLLLVGFSSSAYANDGFTLFTLGDGAQAQSVNVKLEILALMTVLSFLPALLMMLT 60

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R I+V +ILR  +G+   PPN V+I +AL MT ++M P      +    P    QI 
Sbjct: 61  SFTRIIVVLAILRQALGLQQSPPNKVLIGIALVMTIFIMRPVGQAIYDEAFLPYDLGQIE 120

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
            T A+ +   P   FM   TRE DL   + +A            D I + +L+P+F++SE
Sbjct: 121 LTEAVVKAEVPLRKFMLAQTRETDLEQMLKIADEP----TTLTADEIPFFVLMPAFVLSE 176

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +F+IGFL+ LPFL+ID++VA+++M+MGMMML P  ISLPFK++ FVL+DGWS+ V  
Sbjct: 177 LKTAFQIGFLLFLPFLVIDLVVASVLMSMGMMMLSPLIISLPFKLMVFVLVDGWSMTVST 236

Query: 241 LVKSF 245
           LV S+
Sbjct: 237 LVASY 241


>gi|320538198|ref|ZP_08038093.1| flagellar biosynthetic protein FliP [Treponema phagedenis F0421]
 gi|320145015|gb|EFW36736.1| flagellar biosynthetic protein FliP [Treponema phagedenis F0421]
          Length = 273

 Score =  185 bits (469), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 75/217 (34%), Positives = 125/217 (57%), Gaps = 2/217 (0%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P       + ++   + T+++IAP LL+++T F R  IV   ++  + +  VPP  V+  
Sbjct: 59  PRTNREVAFSIQLLLLLTLIAIAPSLLLLMTSFLRISIVLDFIKRALSLQQVPPTQVLNG 118

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           +ALF+T ++M P  +       +P+ + +I   TA     +P  +FM          + +
Sbjct: 119 IALFLTLFIMWPVFNEVYTNSFKPMADGEINIETAYTEAEKPIRLFMYKQMAHDSSYITL 178

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
            M+ +     +      +   ILIP+F++ EL  +F+IG  + LPF+IIDM+VA+I+M+M
Sbjct: 179 CMSMAKLPKPNTLA--DVPTHILIPAFILHELTIAFQIGIFLYLPFIIIDMVVASILMSM 236

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           GM+MLPP  IS+PFK+I FVL+DGW+LL+  L  SF+
Sbjct: 237 GMIMLPPVQISMPFKLILFVLVDGWNLLIGQLFYSFL 273


>gi|259417183|ref|ZP_05741102.1| flagellar biosynthetic protein FliP [Silicibacter sp. TrichCH4B]
 gi|259346089|gb|EEW57903.1| flagellar biosynthetic protein FliP [Silicibacter sp. TrichCH4B]
          Length = 248

 Score =  185 bits (469), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 100/237 (42%), Positives = 151/237 (63%), Gaps = 6/237 (2%)

Query: 9   LFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIV 68
           + LV P++  A+      +N+    SIS   ++   + T+LS+AP LL+M+TCFP  I V
Sbjct: 15  VLLVQPQVALAQEL---SLNLADGQSISARTIQLILLITVLSVAPGLLVMLTCFPFLITV 71

Query: 69  FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128
            SILR  +G+   PPN+++ISLA+F+T++VM P    + + GI PL++ ++    A++R 
Sbjct: 72  LSILRQAIGLQQAPPNMLMISLAMFLTYFVMEPVFTEAWDTGIAPLIDEELEVVPALERA 131

Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188
            EPF VFM N     D   +  +A           +      +LIPSFM+SE+ R+FEIG
Sbjct: 132 VEPFRVFMANRL---DPDTYYAIADLRPGTQGSDPSPESPLSVLIPSFMLSEITRAFEIG 188

Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           FL+ LPFL+ID++ A ++M+MGMMM+PP  +SLPFK+ FFV+ DGWSL+   LV+S+
Sbjct: 189 FLVFLPFLVIDLVTAAVLMSMGMMMVPPALVSLPFKLAFFVVADGWSLIASALVRSY 245


>gi|126730033|ref|ZP_01745845.1| flagellar biosynthetic protein FliP [Sagittula stellata E-37]
 gi|126709413|gb|EBA08467.1| flagellar biosynthetic protein FliP [Sagittula stellata E-37]
          Length = 245

 Score =  184 bits (468), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 95/226 (42%), Positives = 140/226 (61%), Gaps = 3/226 (1%)

Query: 20  KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79
            ++  D+       S++   V+   + T+LS+AP + IMVTCFP  + V +ILR  +G+ 
Sbjct: 22  PAAAQDISIDLGGGSVTATSVQLILLITLLSLAPGIAIMVTCFPFMVTVLAILRQAVGLQ 81

Query: 80  SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139
             PPN++I+SLALF+T++VM P    + + G+QPL+  QI    A  R   PF  FM   
Sbjct: 82  QSPPNMLIVSLALFLTYFVMEPVFTEAWDTGVQPLIEEQIEVEEAAIRTLAPFRDFMAGR 141

Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
           T   D   +  MA       +          +L+PSFM+SE+ R+F++GFLI LPFLIID
Sbjct: 142 T---DPDTYRAMADLRPDARETVLAPEAPLSVLVPSFMLSEVARAFQVGFLIFLPFLIID 198

Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++VA ++M+MGMMM+PP  +SLPFK+ FFV+ DGWSLL  +LV+ +
Sbjct: 199 LVVAAVLMSMGMMMVPPAIVSLPFKLAFFVVADGWSLLAGSLVRGY 244


>gi|77464887|ref|YP_354391.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides 2.4.1]
 gi|77389305|gb|ABA80490.1| Type III secretion system inner membrane P protein [Rhodobacter
           sphaeroides 2.4.1]
          Length = 239

 Score =  184 bits (468), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 91/226 (40%), Positives = 141/226 (62%), Gaps = 5/226 (2%)

Query: 20  KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79
            ++    +++    S++   V+   + T+LS+ P L +M+TCFP  + V SILR  +G+ 
Sbjct: 18  ATAQSLSLDLGDGGSLTARSVQLIAVITLLSLVPALAMMITCFPFIVTVLSILRQAIGLQ 77

Query: 80  SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139
             PPN++I+SLALF+T+YVM P    +   GI PL  N++    A+   A PF  FM   
Sbjct: 78  QAPPNMLIVSLALFLTWYVMDPVFTEAWTRGIGPLTRNELDLPQALAAAAVPFRGFMTGR 137

Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
                L+     A  + R         + + +L+PSF++SE++R+FEIGFLI LPFLIID
Sbjct: 138 IDPDTLA-----ALQALRPGPAAPPSEVSFSVLVPSFLLSEIQRAFEIGFLIYLPFLIID 192

Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++V+ ++M+MGMMM+PP  +S+PFK+ FFV+ DGWSL+   LV+S+
Sbjct: 193 LVVSAVLMSMGMMMVPPAVVSMPFKLAFFVVADGWSLISGALVRSY 238


>gi|312883878|ref|ZP_07743595.1| type III secretion system protein [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368336|gb|EFP95871.1| type III secretion system protein [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 216

 Score =  184 bits (468), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 71/208 (34%), Positives = 124/208 (59%), Gaps = 2/208 (0%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +       +L++ P + +M T F +  +VFS+LR  +G+  +PPN+ +  LA+ ++ ++M
Sbjct: 8   LNLIVSLALLALVPFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMAMYGLAIILSIFIM 67

Query: 100 SPTLDRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
           +P    + +   Q    + +  +    I    +P+  F++ + RE +   F D A +   
Sbjct: 68  APVGFETYDYVKQNEISLEDPESIEGVIDNGLQPYREFLKKHIRETESVFFTDAARALWP 127

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
              + + +     +L+P+F +SEL R+FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ P 
Sbjct: 128 KKYVERLETDSLLLLLPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPM 187

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +ISLPFK++ FVL+DGW+ L   LV S+
Sbjct: 188 TISLPFKLLLFVLLDGWTKLTHGLVLSY 215


>gi|221640808|ref|YP_002527070.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides KD131]
 gi|221161589|gb|ACM02569.1| Type III secretion system inner membrane P protein [Rhodobacter
           sphaeroides KD131]
          Length = 238

 Score =  184 bits (468), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 92/226 (40%), Positives = 142/226 (62%), Gaps = 5/226 (2%)

Query: 20  KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79
            ++    +++    S++T  V+   + T+LS+ P L +M+TCFP  + V SILR  +G+ 
Sbjct: 17  AAAQSLSLDLGDSGSLATRSVQLIAVITLLSLVPALAMMITCFPFIVTVLSILRQAIGLQ 76

Query: 80  SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139
             PPN++I+SLALF+T+YVM P    +   GI PL  N++    A+   A PF  FM   
Sbjct: 77  QAPPNMLIVSLALFLTWYVMDPVFTEAWTKGIAPLTRNELDLPQALAAAAIPFRSFMAGR 136

Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
                L+     A  + R         + + +L+PSF++SE++R+FEIGFLI LPFLIID
Sbjct: 137 IDPDTLA-----ALQALRPGPAAPPSEVSFSVLVPSFLLSEIQRAFEIGFLIYLPFLIID 191

Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++V+ ++M+MGMMM+PP  +S+PFK+ FFV+ DGWSL+   LV+S+
Sbjct: 192 LVVSAVLMSMGMMMVPPAVVSMPFKLAFFVVADGWSLISGALVRSY 237


>gi|149200773|ref|ZP_01877748.1| Flagellar transport protein FliP [Roseovarius sp. TM1035]
 gi|149145106|gb|EDM33132.1| Flagellar transport protein FliP [Roseovarius sp. TM1035]
          Length = 246

 Score =  184 bits (468), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 84/226 (37%), Positives = 140/226 (61%), Gaps = 4/226 (1%)

Query: 20  KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79
           +  L  +     + +  +  ++   + T L++ P L++ +T F R IIV SILR  MG  
Sbjct: 21  QQGLPAITLSDENGTTYSLSLQILALMTALTVLPSLVLGMTAFTRIIIVLSILRQAMGTM 80

Query: 80  SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139
             PPN V+I++ALF++F+VM P L    +  + P ++ Q+    A++   +    FM  N
Sbjct: 81  QTPPNQVLIAIALFLSFFVMQPVLTEVYDTALSPYLDGQMAPDVAVRLAWDKLSGFMLAN 140

Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
           TR+ DL +F ++A     +     +  +   +L+P+++ SEL+ +F+IGFL+ LPFL+ID
Sbjct: 141 TRQNDLLMFAELAG----DAPYASDAEVPVAVLLPAYITSELKTAFQIGFLLFLPFLVID 196

Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M++A+I+MA+GMMML P  +SLPFK++ FVL+DGW+L + +L  SF
Sbjct: 197 MVIASILMALGMMMLSPMIVSLPFKLLLFVLVDGWALTMGSLASSF 242


>gi|188496180|ref|ZP_03003450.1| flagellar biosynthetic protein FliP [Escherichia coli 53638]
 gi|188491379|gb|EDU66482.1| flagellar biosynthetic protein FliP [Escherichia coli 53638]
          Length = 250

 Score =  184 bits (468), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 83/214 (38%), Positives = 131/214 (61%), Gaps = 6/214 (2%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
            +    +  ++   + T++ + P + +M+TCF RFIIV S+LR  +G+   PPN ++I +
Sbjct: 36  GNTQEYSVKIQVLILMTLVGLLPTMALMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGI 95

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           AL +T  VM P      +  + P  N+QIT T A+   A P   FM   T +K ++  M 
Sbjct: 96  ALSLTMLVMRPIWLNIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMT 155

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           +  +     D       +  I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMG
Sbjct: 156 IGGAKGNAADQ------DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMG 209

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           MMML P  +SLPFK++ FVLIDGWSL +  L  S
Sbjct: 210 MMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243


>gi|325295421|ref|YP_004281935.1| flagellar biosynthetic protein FliP [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065869|gb|ADY73876.1| flagellar biosynthetic protein FliP [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 242

 Score =  184 bits (468), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 103/246 (41%), Positives = 160/246 (65%), Gaps = 6/246 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMN-IPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           M +Y   A+  +   L++  +S  + +N     L      ++   + TILS+AP +LI V
Sbjct: 1   MKKYSQVAIVAIAINLLYISTSYGETVNDFLPQLGNLDITLKILFLITILSLAPAILITV 60

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R +I+ S+LR  +G    PPN VII+L+LF+T + M+PT  +  E+ IQP +N +I
Sbjct: 61  TSFTRIVIILSLLRHALGTPQTPPNQVIIALSLFLTLFTMAPTFQQIDELAIQPYINKKI 120

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           ++  AI+R +EP   FM  NTR++DL LF+D+     RN   +    I    LIP+FM+S
Sbjct: 121 SDVEAIKRASEPIKNFMLRNTRKEDLKLFLDI-----RNEKPSSPQEISMLTLIPAFMVS 175

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           E+R + E+ F+I LPF++ID++VA+I+M+MGMMM+PP  +SLPFK+I FVL DGW LL++
Sbjct: 176 EIRTALEVVFVIFLPFIVIDLLVASILMSMGMMMIPPMMLSLPFKLILFVLSDGWELLIK 235

Query: 240 NLVKSF 245
           +++ S+
Sbjct: 236 SIILSY 241


>gi|254466138|ref|ZP_05079549.1| flagellar biosynthetic protein FliP [Rhodobacterales bacterium Y4I]
 gi|206687046|gb|EDZ47528.1| flagellar biosynthetic protein FliP [Rhodobacterales bacterium Y4I]
          Length = 247

 Score =  184 bits (468), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 98/233 (42%), Positives = 144/233 (61%), Gaps = 6/233 (2%)

Query: 13  TPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72
            P+   A+      +++    S+S   ++   + T+LS+AP LLIM+TCFP  + V SIL
Sbjct: 19  MPQTALAQEL---SLSLADGESVSARSIQLILLITVLSLAPGLLIMITCFPFLVTVLSIL 75

Query: 73  RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132
           R G+G+   PPN+++ISLALF+T++VM P    +   GI PL+  Q+    AI R  EPF
Sbjct: 76  RQGIGLQQAPPNMLMISLALFLTYFVMEPVFTEAWNSGISPLLEEQLEPGEAISRSLEPF 135

Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192
             FM N     D   F  +A        +          L+PSF++SE+ R+F+IGFL+ 
Sbjct: 136 RAFMANRL---DPDTFYAIADLRPETQGMDPVPQAPLSALVPSFLLSEIARAFQIGFLVF 192

Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LPFL+ID++VA ++M+MGMMM+PP  +SLPFK+ FFV+ DGWSL+   LV+S+
Sbjct: 193 LPFLVIDLVVAAVLMSMGMMMVPPAIVSLPFKLAFFVVADGWSLIATALVRSY 245


>gi|323171041|gb|EFZ56690.1| flagellar biosynthetic protein FliP [Escherichia coli LT-68]
          Length = 250

 Score =  184 bits (467), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 82/214 (38%), Positives = 131/214 (61%), Gaps = 6/214 (2%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
            +    +  ++   + T++ + P +++M+TCF RFIIV S+LR  +G+   PPN ++I +
Sbjct: 36  GNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGI 95

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           AL +T  VM P      +  + P  N+QI  + A+   A P   FM   T +K ++  M 
Sbjct: 96  ALSLTMLVMRPIWLNIYDHAVVPFENDQIPLSDALSTAATPLKRFMLAQTDKKAMAQIMT 155

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           +  +     D       +  I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMG
Sbjct: 156 IGGAKGNAADQ------DLTIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMG 209

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           MMML P  +SLPFK+I FVLIDGWSL +  L  S
Sbjct: 210 MMMLSPLIVSLPFKLILFVLIDGWSLTIGTLTTS 243


>gi|332559786|ref|ZP_08414108.1| FliP2 [Rhodobacter sphaeroides WS8N]
 gi|332277498|gb|EGJ22813.1| FliP2 [Rhodobacter sphaeroides WS8N]
          Length = 238

 Score =  184 bits (467), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 91/224 (40%), Positives = 140/224 (62%), Gaps = 5/224 (2%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           +    +++    S++   V+   + T+LS+ P L +M+TCFP  + V SILR  +G+   
Sbjct: 19  AQSLSLDLGDGGSLTARSVQLIAVITLLSLVPALAMMITCFPFIVTVLSILRQAIGLQQA 78

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           PPN++I+SLALF+T+YVM P    +   GI PL  N++    A+   A PF  FM     
Sbjct: 79  PPNMLIVSLALFLTWYVMDPVFTEAWTRGIGPLTRNELDLPQALAAAAVPFRGFMTGRID 138

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
              L+     A  + R         + + +L+PSF++SE++R+FEIGFLI LPFLIID++
Sbjct: 139 PDTLA-----ALQALRPGPAAPPSEVSFSVLVPSFLLSEIQRAFEIGFLIYLPFLIIDLV 193

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           V+ ++M+MGMMM+PP  +S+PFK+ FFV+ DGWSL+   LV+S+
Sbjct: 194 VSAVLMSMGMMMVPPAVVSMPFKLAFFVVADGWSLISGALVRSY 237


>gi|217077267|ref|YP_002334985.1| flagellar biosynthesis protein FliP [Thermosipho africanus TCF52B]
 gi|217037122|gb|ACJ75644.1| flagellar biosynthetic protein FliP [Thermosipho africanus TCF52B]
          Length = 251

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 83/249 (33%), Positives = 141/249 (56%), Gaps = 6/249 (2%)

Query: 2   IRYCFFALFLVTPELVFAKSSLHD-----VMNIPADLSISTWIVRTFGIFTILSIAPILL 56
           ++  F  +FLV   + FA+  +        ++ P         +    + T+LS+AP +L
Sbjct: 1   MKRLFVLIFLVIVFVSFAQDEVPLPNISIQLSPPQQPRDLVNTLEILLLLTVLSLAPSIL 60

Query: 57  IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN 116
           I+ T F R IIVFS LR  +G    PPN ++I LALF+TF++M P  +      I P +N
Sbjct: 61  ILFTSFTRIIIVFSFLRNALGTRQTPPNQILIGLALFLTFFIMQPVWNDIYNNAITPYLN 120

Query: 117 NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
           ++I       R  +    FM    +       + M  + +   +I   +     +LIP+F
Sbjct: 121 SEIGYEELFSRSMDRLRTFMITELKIHHNEDNVFM-LADNVGKEIDSVEEAPNSVLIPAF 179

Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
           +I EL   F++G L+ +PF+++DM+VA+I++++GM+M+PP  +SLPFK++ FVL++GW +
Sbjct: 180 VIGELEIGFKMGILLYIPFIVMDMVVASILLSLGMIMIPPVLVSLPFKILLFVLVNGWDM 239

Query: 237 LVENLVKSF 245
           L+ +L+KSF
Sbjct: 240 LIGSLIKSF 248


>gi|1346805|sp|P37828|PRO2_XANCG RecName: Full=Pathogenicity-related ORF2
 gi|901847|gb|AAA69968.1| pathogenicity protein [Xanthomonas campestris]
          Length = 216

 Score =  184 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 115/206 (55%), Gaps = 2/206 (0%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
              +  +L + P   ++VT + + ++V  +LR  +G+  VPPN+V+  +AL ++ +VM+P
Sbjct: 10  LLVVVIMLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAP 69

Query: 102 TLDRSIEMGIQPLMNNQITETTA--IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
               + +   Q              +    EPF  F+  +TRE++ + FM  A       
Sbjct: 70  VGMEAFKAAAQNYGAGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKD 129

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                   +  +L P+F +SEL  +F IGFL+ L F++ID++VA  +MAMG+  + PT++
Sbjct: 130 KAATLKSDDLLVLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNV 189

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++PFK++ FV +DGWS+L+  LV S+
Sbjct: 190 AIPFKLLLFVAMDGWSMLIHGLVLSY 215


>gi|89056669|ref|YP_512120.1| flagellar biosynthesis protein FliP [Jannaschia sp. CCS1]
 gi|88866218|gb|ABD57095.1| flagellar biosynthetic protein FliP [Jannaschia sp. CCS1]
          Length = 243

 Score =  184 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 94/244 (38%), Positives = 147/244 (60%), Gaps = 7/244 (2%)

Query: 2   IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
           +  C     L+      A  +    +++    S++    +   + ++LS+AP L +MVTC
Sbjct: 6   LTRCLVVAALLAISWPSAAIAQEISLDLGDGSSLTARSFQLIALISVLSLAPGLAVMVTC 65

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           FP  + V SILR  +G+   PPN++I+SLALF+T++VM+P  + +   GI PL+  ++T 
Sbjct: 66  FPFVVTVLSILRQAIGLQQSPPNMLIVSLALFLTYFVMAPVFEEAYRAGIAPLIAGELTP 125

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
             AI  + EPF  FM N      L    ++              + +  +LIPSFM+SE+
Sbjct: 126 DAAIPLIYEPFRGFMLNRVDTSTLVSLAEL-------RPGADAANPDPSVLIPSFMLSEV 178

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
            R+F+IGFL+ LPFL+ID++VA I+M+MGMMM+PP  +SLPFK+ FFV+ DGW+L+   L
Sbjct: 179 ERAFQIGFLVFLPFLVIDLVVAAILMSMGMMMVPPAIVSLPFKLAFFVVADGWALITGAL 238

Query: 242 VKSF 245
           V+S+
Sbjct: 239 VRSY 242


>gi|294678995|ref|YP_003579610.1| flagellar biosynthetic protein FliP [Rhodobacter capsulatus SB
           1003]
 gi|294477815|gb|ADE87203.1| flagellar biosynthetic protein FliP [Rhodobacter capsulatus SB
           1003]
          Length = 240

 Score =  184 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 105/240 (43%), Positives = 147/240 (61%), Gaps = 3/240 (1%)

Query: 6   FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65
             AL L    L     +    +++  + S++   +      T+LS+AP L IMVTCFP  
Sbjct: 3   VLALALTLMILAAPAGAQEITLDMGGNGSLTNSSLILIAGITLLSLAPGLAIMVTCFPFI 62

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
           + V SILR  MG+   PPN++IISLALF+T++VM PT   S + GI+PL+  +I   TA 
Sbjct: 63  VTVLSILRQAMGLQQSPPNMLIISLALFLTWFVMEPTFMASYQAGIEPLIAQKIDIVTAF 122

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
           +R  EPF +FM   T   D   F  +A      T           IL+PSFM+SE+ R+F
Sbjct: 123 ERGVEPFRIFMAGRT---DPETFTQLAAIREGATYTGTAREAPLSILVPSFMLSEITRAF 179

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           EIGFL+ LPFLIID++V+ I+M+MGMMM+PP  ++LPFK+ FFV+ +GW LL   LV+S+
Sbjct: 180 EIGFLVFLPFLIIDLVVSAILMSMGMMMVPPAVVALPFKLAFFVVANGWVLLSGALVRSY 239


>gi|283782107|ref|YP_003372862.1| flagellar biosynthetic protein FliP [Pirellula staleyi DSM 6068]
 gi|283440560|gb|ADB19002.1| flagellar biosynthetic protein FliP [Pirellula staleyi DSM 6068]
          Length = 297

 Score =  184 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 81/215 (37%), Positives = 127/215 (59%), Gaps = 6/215 (2%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  ++   + T+LS+AP +L+M T F R ++V  +LR  +G   +PP+ VI +LA+F+T 
Sbjct: 79  SSTLQIMLLLTVLSLAPAILLMTTSFVRIVVVLGLLRQALGTNQLPPSQVITALAMFLTL 138

Query: 97  YVMSPTLDRSIEMGIQPLMNN-QITETTAIQRVAEPFWVFMRNNT----REKDLSLFMDM 151
            +M+PT +      I+P  +   +T   A  R + P   FM           D+ LF + 
Sbjct: 139 LIMTPTWNSVYHEAIEPYTSGADLTPEEAWNRGSLPIKRFMSRQIEVAGNSDDVWLFYEY 198

Query: 152 AHSS-HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
                         D +   +L+P+FM+SEL+ SF IGF I LPFLI+D++V+++ ++MG
Sbjct: 199 LPEENRPAKPPETYDEVPLSVLLPAFMLSELKTSFLIGFQIYLPFLILDLVVSSVTISMG 258

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMMLPP  ISLP K++ FVL+DGW+L V  L++SF
Sbjct: 259 MMMLPPVMISLPLKLLLFVLVDGWTLTVRMLLESF 293


>gi|221639477|ref|YP_002525739.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides KD131]
 gi|221160258|gb|ACM01238.1| Flagellar biosynthetic protein fliP [Rhodobacter sphaeroides KD131]
          Length = 249

 Score =  184 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 89/220 (40%), Positives = 138/220 (62%), Gaps = 4/220 (1%)

Query: 26  VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
            +      +  +  ++   + T L++ P L++ ++ F R IIV SILR  +G    PPN 
Sbjct: 31  TVTEGTGGTSYSLSLQILALMTALTVLPSLVLGMSAFTRIIIVLSILRQALGTQQTPPNQ 90

Query: 86  VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145
           V+I+LALF+TF+VM PTL    E  + P ++ QI    AI+R       F+  NTR+ DL
Sbjct: 91  VLIALALFLTFFVMQPTLGALYEQSLSPFLDGQIEAQPAIERGGAIMKDFLIANTRQNDL 150

Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
            +F D+A +        +   + +  L+P+FM SEL+ +F+IGFL+ LPFL+IDM++A+I
Sbjct: 151 LMFSDLAGAG----PYAEPTEVPFSTLLPAFMTSELKTAFQIGFLLFLPFLVIDMVIASI 206

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +MA+GMMML P  +SLPFK++ FVL+DGW+L V +L  ++
Sbjct: 207 LMALGMMMLSPMLVSLPFKLLLFVLVDGWALTVGSLAATY 246


>gi|170021379|ref|YP_001726333.1| flagellar biosynthesis protein FliP [Escherichia coli ATCC 8739]
 gi|169756307|gb|ACA79006.1| flagellar biosynthetic protein FliP [Escherichia coli ATCC 8739]
          Length = 250

 Score =  184 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 81/214 (37%), Positives = 131/214 (61%), Gaps = 6/214 (2%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
            +    +  ++   + T++ + P +++M+TCF RFIIV S+LR  +G+   PPN ++I +
Sbjct: 36  GNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGI 95

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           AL +T  VM P      +  + P  N++IT T A+   A P   FM   T +K ++  M 
Sbjct: 96  ALSLTMLVMRPIWLNIYDHAVVPFENDRITLTDALSTAATPLKRFMLAQTDKKAMAQIMT 155

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           +  +             +  I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMG
Sbjct: 156 IGGAKGNAA------DQDLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMG 209

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           MMML P  +SLPFK++ FVLIDGWSL +  L  S
Sbjct: 210 MMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243


>gi|83646770|ref|YP_435205.1| flagellar biosynthesis protein FliP [Hahella chejuensis KCTC 2396]
 gi|83634813|gb|ABC30780.1| flagellar biosynthetic protein FliP [Hahella chejuensis KCTC 2396]
          Length = 243

 Score =  184 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 90/209 (43%), Positives = 137/209 (65%), Gaps = 4/209 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
              ++   + T+LS+AP LLI +T F R +IV S+LR   GM   PPN VII+L+LF+T 
Sbjct: 38  ASALQVLAVLTVLSLAPALLIALTSFTRIVIVLSMLRYAFGMQQTPPNTVIIALSLFLTL 97

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           + M+P  ++  +  +QP +  ++  T A+     P   FM   TREKDL+L ++MA    
Sbjct: 98  FTMAPVFNKIDQQAVQPYLAGELVFTEAVNAGLAPMREFMVRQTREKDLALAIEMAGEES 157

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
             T     + I    LI +FM+SEL+ +F+IGF+I LPFL+ID++ A+++M+MGM+M+PP
Sbjct: 158 PET----LNDISNTSLITAFMLSELQTAFQIGFVIFLPFLLIDLVSASVLMSMGMIMVPP 213

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            +ISLP K++ FVLI+GW+L+ + LV SF
Sbjct: 214 LTISLPVKILMFVLIEGWTLVAQALVGSF 242


>gi|262284525|gb|ACY41062.1| VscR [Vibrio alginolyticus]
          Length = 216

 Score =  183 bits (465), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 71/208 (34%), Positives = 126/208 (60%), Gaps = 2/208 (0%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +       +L++ P + +M T F +  +VFS+LR  +G+  +PPN+ +  LA+ ++ ++M
Sbjct: 8   LNLIVSLALLALIPFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIM 67

Query: 100 SPTLDRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
           +P    + +   Q    + +  +    I+   +P+  F++ + RE ++  F D A +   
Sbjct: 68  APVGFETYDYVKQHDISLEDSASVEGLIESGLQPYREFLKKHIRETEVIFFTDAARTLWP 127

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
              + + +     +L+P+F +SEL R+FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ P 
Sbjct: 128 QKYVDRLESDSLLLLLPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPM 187

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +ISLPFK++ FVL+DGW+ L   LV S+
Sbjct: 188 TISLPFKLLLFVLLDGWTKLTHGLVLSY 215


>gi|226313054|ref|YP_002772948.1| flagellar biosynthetic protein FliP precursor [Brevibacillus brevis
           NBRC 100599]
 gi|226096002|dbj|BAH44444.1| flagellar biosynthetic protein FliP precursor [Brevibacillus brevis
           NBRC 100599]
          Length = 253

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 98/248 (39%), Positives = 152/248 (61%), Gaps = 12/248 (4%)

Query: 6   FFALFLVTPELVFAKSSLHDVM--------NIPADLSISTWIVRTFGIFTILSIAPILLI 57
             A+ L  P++  A      ++                ++  ++   I T+LS+AP +L+
Sbjct: 10  LVAVLLSVPDMAMAAPVGTPLVPSIDLKIGGGTGTPQETSTAIQLLLILTVLSVAPAILL 69

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           ++T F R IIV S +R  +    +PPN V+I+LALFMTF++M+PTL +  E  +QP M  
Sbjct: 70  LMTSFARIIIVLSFVRNALATQQMPPNQVLIALALFMTFFIMAPTLGQVNETAVQPFMQG 129

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
           ++T+  A      PF  FM   TREKDL+LF++   +    T       I    L+P++ 
Sbjct: 130 KLTQQQAFDAAVIPFKQFMAKQTREKDLALFLEYTKAERPKT----IQDIPLNALVPAYA 185

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
           ISEL+ +F+IGF+I +PFL+IDMI+++I+M MGMMMLPP  ISLPFK++ F+++DGW L+
Sbjct: 186 ISELKTAFQIGFMIFIPFLVIDMIISSILMGMGMMMLPPVMISLPFKILLFIMVDGWYLI 245

Query: 238 VENLVKSF 245
           V++L+ SF
Sbjct: 246 VKSLLTSF 253


>gi|108763107|ref|YP_630667.1| type III secretion system protein [Myxococcus xanthus DK 1622]
 gi|108466987|gb|ABF92172.1| FliP/MopC/SpaP family protein [Myxococcus xanthus DK 1622]
          Length = 231

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 70/222 (31%), Positives = 124/222 (55%), Gaps = 9/222 (4%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           S ++  +        + + P  L+M T F +  +V SI+R+ +G   +PP  VI  LA+ 
Sbjct: 10  SFASRPLILILALAAMGLVPFALMMATSFVKISVVLSIVRSALGTQQIPPTQVITGLAII 69

Query: 94  MTFYVMSPTLDRSIEMGIQPL---------MNNQITETTAIQRVAEPFWVFMRNNTREKD 144
           +T Y+M+P   +        +              +   A  +  EP   ++      KD
Sbjct: 70  LTVYIMAPVGQQMYRAAGLDIWAKGPGVFSSETVGSMLGAANKSKEPLREWLIKKVTTKD 129

Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
            +LF ++A    +  D    +  ++ ++IP+F++SEL+ +F+IGFL+ +PF++IDM+VA 
Sbjct: 130 RALFFNLAKKMRKGEDRDAVESNDFMVIIPAFVVSELKEAFQIGFLLFVPFIVIDMVVAN 189

Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           I++A+GM ML PT+IS+PFK++ FVL+DGW L+ + LV  ++
Sbjct: 190 ILLALGMHMLSPTTISMPFKLLLFVLVDGWYLIAKGLVVGYL 231


>gi|153832450|ref|ZP_01985117.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio
           harveyi HY01]
 gi|156974015|ref|YP_001444922.1| type III secretion system protein [Vibrio harveyi ATCC BAA-1116]
 gi|41834184|gb|AAS13322.1| VscR [Vibrio harveyi]
 gi|148871245|gb|EDL70117.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio
           harveyi HY01]
 gi|156525609|gb|ABU70695.1| hypothetical protein VIBHAR_01726 [Vibrio harveyi ATCC BAA-1116]
          Length = 216

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 71/208 (34%), Positives = 125/208 (60%), Gaps = 2/208 (0%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +       +L++ P + +M T F +  +VFS+LR  +G+  +PPN+ +  LA+ ++ ++M
Sbjct: 8   LNLIVTLALLALIPFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIM 67

Query: 100 SPTLDRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
           +P    + +   Q    + +  +    I+   +P+  F++ + RE +   F D A +   
Sbjct: 68  APVGFETYDYVTQHEISLEDSESIEGLIESGLQPYREFLKKHIRETESVFFTDAARTLWP 127

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
              + + +     +L+P+F +SEL R+FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ P 
Sbjct: 128 QKYVDRLESDSLLLLLPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPM 187

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +ISLPFK++ FVL+DGW+ L   LV S+
Sbjct: 188 TISLPFKLLLFVLLDGWTKLTHGLVLSY 215


>gi|161520303|ref|YP_001583730.1| type III secretion system protein [Burkholderia multivorans ATCC
           17616]
 gi|189353518|ref|YP_001949145.1| type III secretion system protein [Burkholderia multivorans ATCC
           17616]
 gi|160344353|gb|ABX17438.1| Yop virulence translocation R [Burkholderia multivorans ATCC 17616]
 gi|189337540|dbj|BAG46609.1| type III secretion protein SctR [Burkholderia multivorans ATCC
           17616]
          Length = 224

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 71/211 (33%), Positives = 122/211 (57%), Gaps = 5/211 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V    +   L IAP   +MVT + + ++V  +LR+ +G+  VPPNLV+  +AL ++ ++M
Sbjct: 8   VALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGVQQVPPNLVLNGIALILSLFIM 67

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAI-----QRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
           +P      +       +     +TA           P   F+ ++TR++D   F+  A S
Sbjct: 68  APVGMSIRDALQARHFDASGQLSTADVGALADAALPPIKDFLVSHTRQRDREFFVRTATS 127

Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
                        +  +L+PSF ++EL ++F+IGF+I + F+++D++VA I++A+GM M+
Sbjct: 128 VWPKNRADGIKDDDLLVLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANILLALGMQMI 187

Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            PT+IS+PFK++ FV +DGWSLLV  LV S+
Sbjct: 188 SPTTISVPFKLLLFVALDGWSLLVHGLVLSY 218


>gi|221200568|ref|ZP_03573610.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia multivorans CGD2M]
 gi|221209245|ref|ZP_03582235.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia multivorans CGD2]
 gi|221170901|gb|EEE03358.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia multivorans CGD2]
 gi|221179909|gb|EEE12314.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia multivorans CGD2M]
          Length = 224

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 71/211 (33%), Positives = 122/211 (57%), Gaps = 5/211 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V    +   L IAP   +MVT + + ++V  +LR+ +G+  VPPNLV+  +AL ++ ++M
Sbjct: 8   VALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIM 67

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAI-----QRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
           +P      +       +     +TA           P   F+ ++TR++D   F+  A S
Sbjct: 68  APVGMSIRDALQARHFDTSGQLSTADVGVLADAALPPIKDFLVSHTRQRDRDFFVRTATS 127

Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
                        +  +L+PSF ++EL ++F+IGF+I + F+++D++VA I++A+GM M+
Sbjct: 128 VWPKNRADDIKDDDLLVLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANILLALGMQMI 187

Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            PT+IS+PFK++ FV +DGWSLLV  LV S+
Sbjct: 188 SPTTISVPFKLLLFVALDGWSLLVHGLVLSY 218


>gi|332669209|ref|YP_004452217.1| flagellar biosynthetic protein FliP [Cellulomonas fimi ATCC 484]
 gi|332338247|gb|AEE44830.1| flagellar biosynthetic protein FliP [Cellulomonas fimi ATCC 484]
          Length = 240

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 83/212 (39%), Positives = 133/212 (62%), Gaps = 4/212 (1%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
              +  +      T+LS+AP L++M T F +  +V S  R  +G+  VPPN V+  LALF
Sbjct: 29  GTPSSSIVVLLAITLLSVAPALILMTTSFTKIFVVLSFTRNALGLQGVPPNQVLAGLALF 88

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
           ++ +VM+P +     +G+QP ++  +T + A+   + P   FM   TRE+DL+L    A 
Sbjct: 89  LSLFVMAPVVSDINSVGVQPYLDGSLTFSQAVDVGSGPLREFMLGQTREQDLALLTRAAD 148

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
             +        + + +  L+P+F++SELR +F +GF+I +PFL+ID++V+  +M+MGMMM
Sbjct: 149 QENP----ASPEDVPFATLVPAFLLSELRSAFIMGFVIFVPFLVIDLVVSASLMSMGMMM 204

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LPP  ISLPFK++ FVL+DGW L+V +LV S+
Sbjct: 205 LPPVMISLPFKILLFVLVDGWGLVVTSLVGSY 236


>gi|302338093|ref|YP_003803299.1| flagellar biosynthetic protein FliP [Spirochaeta smaragdinae DSM
           11293]
 gi|301635278|gb|ADK80705.1| flagellar biosynthetic protein FliP [Spirochaeta smaragdinae DSM
           11293]
          Length = 260

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 75/218 (34%), Positives = 125/218 (57%), Gaps = 6/218 (2%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P         ++      +++++P ++I+ TCF R  IVF  ++  + +  VPPN V++ 
Sbjct: 46  PQSNQEVALSIQLLLFLAVITLSPSIIILTTCFLRIAIVFDFIKRSLSLQQVPPNQVMMG 105

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT--REKDLSL 147
           +A+F+T ++M PT ++  +   +P  + +I         A P  +FM        +++ L
Sbjct: 106 VAIFLTIFIMWPTGEQIYQNSFRPFADGEIGIQEMYDEAAAPLRLFMYRQMDGDHENIQL 165

Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
           FM M               +   +LIPSF++ EL  +F+IG L+ +PF+IIDM+VA+ +M
Sbjct: 166 FMRMRGLGKPE----NFSQVPTYVLIPSFVLHELTVAFKIGILLFVPFIIIDMVVASTLM 221

Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +MGM+MLPP  ISLPFK+I FVL+DGW L+ + L+ SF
Sbjct: 222 SMGMIMLPPVMISLPFKLILFVLVDGWDLITQQLILSF 259


>gi|45657250|ref|YP_001336.1| flagellar biosynthesis protein FliP [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45600488|gb|AAS69973.1| flagellar protein export system [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 267

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 80/226 (35%), Positives = 141/226 (62%), Gaps = 7/226 (3%)

Query: 23  LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82
           L+  +N       ++  +    + TILS+AP +++ +T F + +IV   +R  + + ++P
Sbjct: 45  LNINVNEAKSPRETSLSLMVLFLVTILSLAPAIVMSLTSFTKIVIVLDFVRRALSIQNLP 104

Query: 83  PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN--- 139
           PN V++ LALFMTF++M+PTL+   E  + P +  +I      ++   P   FM      
Sbjct: 105 PNQVMMGLALFMTFFIMAPTLNTVNEKALGPYLEGKIDTNAFFEKGMIPIREFMMRQIGT 164

Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
           +  KD++LF+ +         +   D +   +LIP+FM+SE++++F IG +I +PF++ID
Sbjct: 165 SGAKDVALFLKIGKVEK----VESFDDVPSYVLIPAFMLSEIKKAFWIGIVIFIPFIVID 220

Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++VA+ +++MG+MMLPP  +SLPFK+I FVL+DGW+L+V  LV+S+
Sbjct: 221 LVVASALLSMGLMMLPPVMVSLPFKLILFVLVDGWNLIVYELVRSY 266


>gi|325109027|ref|YP_004270095.1| flagellar biosynthetic protein FliP [Planctomyces brasiliensis DSM
           5305]
 gi|324969295|gb|ADY60073.1| flagellar biosynthetic protein FliP [Planctomyces brasiliensis DSM
           5305]
          Length = 340

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 94/248 (37%), Positives = 139/248 (56%), Gaps = 21/248 (8%)

Query: 15  ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74
             VF +    D M  P  L+ +  I+    + ++   AP L+IM TCF R I+V  +LR 
Sbjct: 74  ASVFPQGFDPDKMLSPQGLTPTLKILILLTLISL---APSLVIMTTCFVRMIVVLGLLRQ 130

Query: 75  GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM--------NNQITETTAIQ 126
            +G   +PPN V++SL+LFMT  +M P    S   G+QP          + +     A++
Sbjct: 131 ALGTQQLPPNQVLVSLSLFMTIMIMWPVWQESYRAGVQPYSSSTYETTADQEEGLQLALE 190

Query: 127 RVAEPFWVFMRNNT----REKDLSLFMDMAHSSHRN------TDITKNDHIEYRILIPSF 176
           R  EP   FM +       E  + +F+D    +         T+      +   +LIP+F
Sbjct: 191 RSLEPIRNFMSDQIYRTGNENAVWMFIDYQKPAEGTAAAETWTEPQSFADVPTTVLIPAF 250

Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
           M+SEL+ +F IGF I LPF+IIDM++A+I+++MGMMMLPP  ISLPFK++ FVL+DGW L
Sbjct: 251 MMSELKTAFVIGFQIYLPFIIIDMVIASILISMGMMMLPPVLISLPFKLLLFVLVDGWYL 310

Query: 237 LVENLVKS 244
            VE L++S
Sbjct: 311 TVEMLLQS 318


>gi|222100861|ref|YP_002535429.1| Flagellar biosynthesis protein FliP [Thermotoga neapolitana DSM
           4359]
 gi|221573251|gb|ACM24063.1| Flagellar biosynthesis protein FliP [Thermotoga neapolitana DSM
           4359]
          Length = 249

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 77/197 (39%), Positives = 121/197 (61%), Gaps = 7/197 (3%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +L++ T F R I+VFS+ R  +G    PPN V+I LALF+TF +M P  +      I
Sbjct: 55  APSILVLFTSFTRIIVVFSLFRNALGTRQTPPNQVMIGLALFLTFLIMQPVWNDIYNNAI 114

Query: 112 QPLMNNQITETTAIQRVAEPFWVFM---RNNTREKDLSLFMDMAHSSHRNTDITKNDHIE 168
            P +  +I      QR+      FM     N   +D    +    + + N +IT+ +   
Sbjct: 115 TPYLEREIGYQEMFQRINNRIREFMIKELKNHHNEDNVFML----AQNANLEITRVEEAP 170

Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
             +LIP+F++ EL  +F++G ++ +PF++IDMIVA+I+++MGM+M+PP  +SLPFK++ F
Sbjct: 171 NSVLIPAFVLGELEIAFKMGVVLYVPFIVIDMIVASILLSMGMIMIPPVFVSLPFKILIF 230

Query: 229 VLIDGWSLLVENLVKSF 245
           V+ +GW LLVE L+KSF
Sbjct: 231 VMANGWDLLVEGLIKSF 247


>gi|28898446|ref|NP_798051.1| type III secretion system protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|91224470|ref|ZP_01259732.1| translocation protein in type III secretion [Vibrio alginolyticus
           12G01]
 gi|153836136|ref|ZP_01988803.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio
           parahaemolyticus AQ3810]
 gi|254228243|ref|ZP_04921672.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio sp.
           Ex25]
 gi|260365110|ref|ZP_05777681.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio
           parahaemolyticus K5030]
 gi|260876607|ref|ZP_05888962.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio
           parahaemolyticus AN-5034]
 gi|260895032|ref|ZP_05903528.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio
           parahaemolyticus Peru-466]
 gi|260900957|ref|ZP_05909352.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio
           parahaemolyticus AQ4037]
 gi|262394133|ref|YP_003285987.1| yop virulence translocation protein R [Vibrio sp. Ex25]
 gi|269967239|ref|ZP_06181303.1| translocation protein in type III secretion [Vibrio alginolyticus
           40B]
 gi|28806663|dbj|BAC59935.1| translocation protein in type III secretion [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|91190812|gb|EAS77079.1| translocation protein in type III secretion [Vibrio alginolyticus
           12G01]
 gi|149750411|gb|EDM61156.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio
           parahaemolyticus AQ3810]
 gi|151939316|gb|EDN58145.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio sp.
           Ex25]
 gi|262337727|gb|ACY51522.1| yop virulence translocation protein R [Vibrio sp. Ex25]
 gi|269828095|gb|EEZ82365.1| translocation protein in type III secretion [Vibrio alginolyticus
           40B]
 gi|308085950|gb|EFO35645.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio
           parahaemolyticus Peru-466]
 gi|308093573|gb|EFO43268.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio
           parahaemolyticus AN-5034]
 gi|308110848|gb|EFO48388.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio
           parahaemolyticus AQ4037]
 gi|308111579|gb|EFO49119.1| type III secretion apparatus protein, YscR/HrcR family [Vibrio
           parahaemolyticus K5030]
 gi|328468941|gb|EGF39901.1| type III secretion system protein YscR [Vibrio parahaemolyticus
           10329]
          Length = 216

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 71/208 (34%), Positives = 125/208 (60%), Gaps = 2/208 (0%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +       +L++ P + +M T F +  +VFS+LR  +G+  +PPN+ +  LA+ ++ ++M
Sbjct: 8   LNLIVSLALLALIPFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIM 67

Query: 100 SPTLDRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
           +P    + +   Q    + +  +    I+   +P+  F++ + RE +   F D A +   
Sbjct: 68  APVGFETYDYVKQHDISLEDSASVEGLIESGLQPYREFLKKHIRETEAIFFTDAARTLWP 127

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
              + + +     +L+P+F +SEL R+FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ P 
Sbjct: 128 QKYVDRLESDSLLLLLPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPM 187

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +ISLPFK++ FVL+DGW+ L   LV S+
Sbjct: 188 TISLPFKLLLFVLLDGWTKLTHGLVLSY 215


>gi|331671782|ref|ZP_08372578.1| flagellar biosynthetic protein FliP [Escherichia coli TA280]
 gi|331070771|gb|EGI42130.1| flagellar biosynthetic protein FliP [Escherichia coli TA280]
          Length = 250

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 83/214 (38%), Positives = 132/214 (61%), Gaps = 6/214 (2%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
            +    +  ++   + T++ + P +++M+TCF RFIIV S+LR  +G+   PPN ++I +
Sbjct: 36  GNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGI 95

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           AL +T  VM P      +  + P  N+QIT T A+   A P   FM   T +K ++  M 
Sbjct: 96  ALSLTMLVMRPIWLNIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMT 155

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           +  +     D       +  I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMG
Sbjct: 156 IGGAKGNAADQ------DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMG 209

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           MMML P  +SLPFK++ FVLIDGWSL +  L  S
Sbjct: 210 MMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243


>gi|239815267|ref|YP_002944177.1| flagellar biosynthetic protein FliP [Variovorax paradoxus S110]
 gi|239801844|gb|ACS18911.1| flagellar biosynthetic protein FliP [Variovorax paradoxus S110]
          Length = 326

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 91/206 (44%), Positives = 136/206 (66%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +R     T+L+I P LL+ +T F R I+V S+LR  +GM   PPN V+I LALF+T + M
Sbjct: 124 LRVVLGLTVLAILPALLVCLTSFLRIIVVLSMLRHAIGMNETPPNTVLIGLALFLTLFTM 183

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           SP L +  +   +P M  +++      +   P   FM   TRE DL+L ++++ +     
Sbjct: 184 SPVLQKVNQDAFEPFMAGKLSMQDGYGKGIAPLREFMVRQTREADLALMVELSKAPTPK- 242

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                + I    LIPSFM+SELR +F+IGF+I LPFL+ID+IV++I+MA+GMMM+PPT+I
Sbjct: 243 ---SMEDISNVQLIPSFMLSELRAAFQIGFVIFLPFLLIDLIVSSILMALGMMMMPPTTI 299

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           +LP K++ F+L+DGWSL+++ LV SF
Sbjct: 300 ALPLKILMFILVDGWSLVLKALVGSF 325


>gi|157147125|ref|YP_001454444.1| flagellar biosynthesis protein FliP [Citrobacter koseri ATCC
           BAA-895]
 gi|157084330|gb|ABV14008.1| hypothetical protein CKO_02902 [Citrobacter koseri ATCC BAA-895]
          Length = 250

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 83/243 (34%), Positives = 128/243 (52%), Gaps = 6/243 (2%)

Query: 2   IRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
           I        +  P L                       +    + T+L + PI+++M+TC
Sbjct: 10  IALLLLGFLVAQPALAANGDITLFSTAANGAGQDYNVKIEILILMTLLGLLPIMVLMMTC 69

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F RFIIV +ILR  +G+   PPN ++  +AL +T  VM P         I P   ++IT 
Sbjct: 70  FTRFIIVLAILRQALGLQQSPPNKILTGIALALTLLVMRPVWTTIYTDAIDPFQKDEITL 129

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
             A+ +   P   +M   T  K ++  M +A       +       +  I+ P++++SEL
Sbjct: 130 KQALAKAEVPLKNYMLAQTNNKAMAQMMSIAGIEGDAREQ------DLTIVTPAYLLSEL 183

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
           + +F+IGF+I +PFL+ID+IVA+I+MAMGMMML P  +SLPFK++ FVL DGW+L+V  L
Sbjct: 184 KTAFQIGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLIVGTL 243

Query: 242 VKS 244
             S
Sbjct: 244 ASS 246


>gi|301646791|ref|ZP_07246645.1| flagellar biosynthetic protein FliP [Escherichia coli MS 146-1]
 gi|307136838|ref|ZP_07496194.1| flagellar biosynthesis protein FliP [Escherichia coli H736]
 gi|331640694|ref|ZP_08341841.1| flagellar biosynthetic protein FliP [Escherichia coli H736]
 gi|301075026|gb|EFK89832.1| flagellar biosynthetic protein FliP [Escherichia coli MS 146-1]
 gi|315616847|gb|EFU97464.1| flagellar biosynthetic protein FliP [Escherichia coli 3431]
 gi|331040068|gb|EGI12276.1| flagellar biosynthetic protein FliP [Escherichia coli H736]
          Length = 250

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 83/214 (38%), Positives = 131/214 (61%), Gaps = 6/214 (2%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
            +    +  ++   + T++ + P + +M+TCF RFIIV S+LR  +G+   PPN ++I +
Sbjct: 36  GNTQEYSVKIQVLILMTLVGLLPTMALMMTCFARFIIVLSLLRQALGLQQTPPNRILIGI 95

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           AL +T  VM P      +  + P  N+QIT T A+   A P   FM   T +K ++  M 
Sbjct: 96  ALSLTMLVMRPIWLNIYDHAVVPFENDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMT 155

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           +  +     D       +  I++P++++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMG
Sbjct: 156 IGGAKGNAADQ------DLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMG 209

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           MMML P  +SLPFK++ FVLIDGWSL +  L  S
Sbjct: 210 MMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTS 243


>gi|269796382|ref|YP_003315837.1| flagellar biosynthetic protein FliP [Sanguibacter keddieii DSM
           10542]
 gi|269098567|gb|ACZ23003.1| flagellar biosynthetic protein FliP [Sanguibacter keddieii DSM
           10542]
          Length = 283

 Score =  182 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 88/234 (37%), Positives = 142/234 (60%), Gaps = 4/234 (1%)

Query: 12  VTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSI 71
           + P    A +     +++    +  +  +      T+LS+AP LL+M+T F +  +V ++
Sbjct: 53  IAPVDPVAPAPGVVTVDLDGTTTAPSSSIVVLLGITLLSVAPSLLLMMTSFTKIFVVLAL 112

Query: 72  LRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEP 131
            R  +G+  VPPN V+  LALF++ ++M+P + +  E+G+QP +N  +    A++  + P
Sbjct: 113 TRNALGLQGVPPNQVLAGLALFLSLFIMAPIIGQVNELGVQPYVNGGLDFGAAVEAGSAP 172

Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
              FM   TRE+D++L    A   +     T    +    LIPSFM+SELR +F IGF+I
Sbjct: 173 LREFMLGQTREEDIALMTRAADQPNP----TDPSTVPMLTLIPSFMLSELRAAFIIGFVI 228

Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            +PFL+ID++V+  +M+MGMMMLPP  ISLPFK++ FVL+DGW ++V  LV S+
Sbjct: 229 FIPFLVIDLVVSASLMSMGMMMLPPVMISLPFKILLFVLVDGWGMIVTALVGSY 282


>gi|218887305|ref|YP_002436626.1| flagellar biosynthesis protein FliP [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758259|gb|ACL09158.1| flagellar biosynthetic protein FliP [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 293

 Score =  182 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 85/209 (40%), Positives = 135/209 (64%), Gaps = 4/209 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           + ++    + T+LS+AP +++ VT F R IIVF  +R  +G+  +PP+ V+ SLA+FMT 
Sbjct: 87  SLLLEILFMLTVLSLAPAIMLTVTSFTRIIIVFHFIRQALGVQQLPPSQVLASLAIFMTV 146

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
            +M P   +  +  +QP +  +I    A+ +   P   FM  +TREKDLS+F  +     
Sbjct: 147 VIMMPVGKQINDTALQPYLEERIGFNEALDKAQVPLRSFMFKHTREKDLSIFYAITKMEQ 206

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
             T     + +   +L  +++ISEL+  F IGFLI +PFL++DM+V++I++AMGMMMLPP
Sbjct: 207 PRT----KEEVPTVMLAAAYVISELKTGFTIGFLIYIPFLVLDMVVSSILLAMGMMMLPP 262

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             +S+PFK++ FV++DGW+LLV +LV SF
Sbjct: 263 MMVSMPFKLLLFVMVDGWALLVGSLVNSF 291


>gi|325519943|gb|EGC99198.1| type III secretion system protein YscR [Burkholderia sp. TJI49]
          Length = 224

 Score =  182 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 71/211 (33%), Positives = 122/211 (57%), Gaps = 5/211 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V    +   L IAP   +MVT + + ++V  +LR+ +G+  VPPNLV+  +AL ++ ++M
Sbjct: 8   VALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIM 67

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAI-----QRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
           +P      +       +     +TA           P   F+ ++TR++D   F+  A S
Sbjct: 68  APVGMSIRDALQARHFDASGQLSTADVGALADAALPPIKDFLVSHTRQRDREFFVRTATS 127

Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
                        +  +L+PSF ++EL ++F+IGF+I + F+++D++VA I++A+GM M+
Sbjct: 128 VWPKNRADGIRDDDLLVLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANILLALGMQMI 187

Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            PT+IS+PFK++ FV +DGWSLLV  LV S+
Sbjct: 188 SPTTISVPFKLLLFVALDGWSLLVHGLVLSY 218


>gi|269105051|ref|ZP_06157746.1| yop virulence translocation protein R [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268160686|gb|EEZ39184.1| yop virulence translocation protein R [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 216

 Score =  182 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 71/208 (34%), Positives = 125/208 (60%), Gaps = 2/208 (0%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +       +L++ P + +M T F +  +VFS+LR  +G+  +PPN+ +  LA+ ++ ++M
Sbjct: 8   LNLIVTLALLALIPFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMAMYGLAIILSIFIM 67

Query: 100 SPTLDRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
           +P    + +   Q    + +  +    I+   +P+  F++ + RE +   F D A +   
Sbjct: 68  APVGFETYDYVTQHEISLEDSESIEGLIESGLQPYREFLKKHIRETESVFFTDAARTLWP 127

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
              + + +     +L+P+F +SEL R+FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ P 
Sbjct: 128 QKYVDRLESDSLLLLLPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPM 187

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +ISLPFK++ FVL+DGW+ L   LV S+
Sbjct: 188 TISLPFKLLLFVLLDGWTKLTHGLVLSY 215


>gi|221209604|ref|ZP_03582585.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia multivorans CGD1]
 gi|221170292|gb|EEE02758.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia multivorans CGD1]
          Length = 224

 Score =  182 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 71/211 (33%), Positives = 122/211 (57%), Gaps = 5/211 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V    +   L IAP   +MVT + + ++V  +LR+ +G+  VPPNLV+  +AL ++ ++M
Sbjct: 8   VALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIM 67

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAI-----QRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
           +P      +       +     +TA           P   F+ ++TR++D   F+  A S
Sbjct: 68  APVGMSIRDALQARHFDTSGQLSTADVGVLADAALPPIKDFLVSHTRQRDRDFFVRTATS 127

Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
                        +  +L+PSF ++EL ++F+IGF+I + F+++D++VA I++A+GM M+
Sbjct: 128 VWPKNRADAIRDDDLLVLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANILLALGMQMI 187

Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            PT+IS+PFK++ FV +DGWSLLV  LV S+
Sbjct: 188 SPTTISVPFKLLLFVALDGWSLLVHGLVLSY 218


>gi|78485085|ref|YP_391010.1| flagellar biosynthesis protein FliP [Thiomicrospira crunogena
           XCL-2]
 gi|78363371|gb|ABB41336.1| flagellar biosynthetic protein FliP [Thiomicrospira crunogena
           XCL-2]
          Length = 252

 Score =  182 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 94/246 (38%), Positives = 144/246 (58%), Gaps = 7/246 (2%)

Query: 3   RYCFFALFLVTPELVFAKSSLHDVMNIPADLSIS--TWIVRTFGIFTILSIAPILLIMVT 60
           R  F    L+ P + F++  +               T  ++   + T L++ P  LI +T
Sbjct: 6   RSLFGIALLLFPIMAFSEPGIPAFTVETDAAGNQDYTLTIQILLLMTGLTLLPAALIAMT 65

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R ++V ++LR  +G    P N V+I LALF+T ++MSP LD+  +  + P +  QI 
Sbjct: 66  SFLRIVVVLALLRQALGTMQTPSNQVLIGLALFLTLFIMSPVLDKIYDTAVSPYLEEQIK 125

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              AI     P   FM   TR  DL +F +MA        +T  + + +++LIP++M SE
Sbjct: 126 FKEAIDVAKTPIHQFMIQQTRADDLGMFAEMADI-----QLTDPESVPFKVLIPAYMTSE 180

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +F+IGF+I +PFLIID++VAT++M+MGMMML P  ISLPFK++ FVLIDGW+L++  
Sbjct: 181 LKTAFQIGFMIFIPFLIIDLVVATLLMSMGMMMLSPMIISLPFKIMLFVLIDGWALIMGT 240

Query: 241 LVKSFI 246
           L  SF+
Sbjct: 241 LANSFV 246


>gi|289548901|ref|YP_003473889.1| flagellar biosynthetic protein FliP [Thermocrinis albus DSM 14484]
 gi|289182518|gb|ADC89762.1| flagellar biosynthetic protein FliP [Thermocrinis albus DSM 14484]
          Length = 236

 Score =  182 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 92/229 (40%), Positives = 146/229 (63%), Gaps = 6/229 (2%)

Query: 17  VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
            FA+      + +          +R   + T+LS+AP +LIM T F R +IV S+LR  +
Sbjct: 13  AFAQQGPG--IELKVSTGSWDNSIRILLLLTVLSLAPSILIMTTAFVRIVIVLSLLRQAI 70

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G+ +VPPN VI+SLA+F+TF+VM PT D+  +  +QPL+N QIT+   ++R +     FM
Sbjct: 71  GVPTVPPNQVIVSLAMFLTFFVMKPTWDKINQQALQPLLNKQITDVEFLERTSSIMKEFM 130

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
             NT+ + L  F+  +              +   +LIP+FM+SE+  +F+I FL+ LPFL
Sbjct: 131 LRNTKRETLQAFLKASTVQRGEEVR----DVPMHVLIPAFMVSEISVAFQIVFLLYLPFL 186

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           I+DM+VA+I+++MG++M+PP  ISLPFK++ FVL +GW L++ +LV+S+
Sbjct: 187 IVDMVVASILISMGVLMVPPQIISLPFKLMLFVLANGWELVILSLVRSY 235


>gi|150020821|ref|YP_001306175.1| flagellar biosynthesis protein FliP [Thermosipho melanesiensis
           BI429]
 gi|149793342|gb|ABR30790.1| flagellar biosynthetic protein FliP [Thermosipho melanesiensis
           BI429]
          Length = 251

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 78/245 (31%), Positives = 131/245 (53%), Gaps = 1/245 (0%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           +I       FL  P+       +   +            +    + T+LS+AP +LI+ T
Sbjct: 5   LIISLLLVSFLSFPQEEIPLPGISLQITPNQQPRDLVNTLEILLLLTVLSLAPSILILFT 64

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R I+VFS +R  +G    PPN ++I LALF+TF++M P  +      I P +N++I 
Sbjct: 65  SFTRIIVVFSFVRNALGTRQTPPNQILIGLALFLTFFIMQPVWNDIYNNAITPYLNSEIG 124

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
                 R  +    FM    +            + +    I   +     ILIP+F+I E
Sbjct: 125 YEEMFSRSMDRLRTFMLTEIKIHHNED-NIYILAENVKKQIDNIEDTPNSILIPAFVIGE 183

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L   F++G L+ +PF+++DM+VA+I++++GM+M+PP  +SLPFK++ FVL++GW +L+ +
Sbjct: 184 LEIGFKMGILLYIPFIVMDMVVASILLSLGMIMIPPVLVSLPFKILLFVLVNGWDILIGS 243

Query: 241 LVKSF 245
           L+KSF
Sbjct: 244 LIKSF 248


>gi|15639705|ref|NP_219155.1| flagellar biosynthesis protein FliP [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189025943|ref|YP_001933715.1| flagellar biosynthesis protein FliP [Treponema pallidum subsp.
           pallidum SS14]
 gi|2494564|sp|P74930|FLIP_TREPA RecName: Full=Flagellar biosynthetic protein fliP
 gi|973197|gb|AAB00546.1| FliP [Treponema pallidum]
 gi|3323020|gb|AAC65684.1| flagellar biosynthetic protein (fliP) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189018518|gb|ACD71136.1| flagellar biosynthetic protein [Treponema pallidum subsp. pallidum
           SS14]
 gi|291060082|gb|ADD72817.1| flagellar biosynthetic protein FliP [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 271

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 76/217 (35%), Positives = 124/217 (57%), Gaps = 2/217 (0%)

Query: 30  PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
           P       + V+   + T++S+AP +L+++T F R  IV   ++  + +  VPP  V+  
Sbjct: 57  PQTNREVAFSVQLLLLLTLISLAPSILLLMTAFLRLSIVLDFIKRALSLQQVPPTQVLHG 116

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           +ALF+  ++M P          +PL + Q+   TA      P  VFM         S+ +
Sbjct: 117 IALFLALFIMWPVFTEIYAKSFKPLTDGQVDIQTAYTEAERPLRVFMYRQMAHDPSSVRL 176

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
            M+ +     D      +   +LIP+F++ EL  +F+IG  + LPF+I+DM+VA+I+M+M
Sbjct: 177 CMSMAKLPKPDTLA--DVPTYVLIPAFILHELTVAFQIGIFLYLPFIIVDMVVASILMSM 234

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           GM+MLPP  ISLPFK++ FVL+DGW+LL++ L  SF+
Sbjct: 235 GMIMLPPVQISLPFKLVLFVLVDGWNLLIDRLFHSFL 271


>gi|91795011|ref|YP_564662.1| flagellar biosynthesis protein FliP [Shewanella denitrificans
           OS217]
 gi|91717013|gb|ABE56939.1| flagellar biosynthetic protein FliP [Shewanella denitrificans
           OS217]
          Length = 243

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 88/245 (35%), Positives = 138/245 (56%), Gaps = 4/245 (1%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           M+R       L++P+ + A       ++   +       +    + T LS  P +L+M+T
Sbjct: 2   MLRAFILGWLLLSPQALGADGFTLLTLDSGQESQAVNIKLEILALMTALSFLPAMLMMLT 61

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R ++V +ILR  +G+   PPN V+I +AL +T ++M P  D   +    P    +I 
Sbjct: 62  SFTRIVVVLAILRQALGLQQSPPNKVLIGIALVLTLFIMRPVGDSIYKEAYLPYDQGKIE 121

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              AI     P   FM   TRE DL   + +A+     T       I + +L+P+F++SE
Sbjct: 122 LMAAIDIAKVPLSQFMLAQTRETDLEQMLKIANEPIDLTPA----EIPFLVLMPAFVLSE 177

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +F+IGFL+ LPFL+ID++VA+++M+MGMMML P  ISLPFK++ FVL+DGW++ V  
Sbjct: 178 LKTAFQIGFLLFLPFLVIDLVVASVLMSMGMMMLSPLIISLPFKLMIFVLVDGWAMTVST 237

Query: 241 LVKSF 245
           L  SF
Sbjct: 238 LTASF 242


>gi|167590548|ref|ZP_02382936.1| Yop virulence translocation R [Burkholderia ubonensis Bu]
          Length = 222

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 70/211 (33%), Positives = 123/211 (58%), Gaps = 5/211 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V    +   L IAP   +MVT + + ++V  +LR+ +G+  VPPNLV+  +AL ++ ++M
Sbjct: 8   VALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIM 67

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAI-----QRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
           +P      +   Q   +     +TA           P   F+ ++TR++D   F+  A S
Sbjct: 68  APVGMSIRDALQQRHFDASGQLSTADVGALADAALPPIKDFLVSHTRQRDREFFVRTATS 127

Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
                        +  +L+PSF ++EL ++F+IGF+I + F+++D++VA I++A+GM M+
Sbjct: 128 VWPKNRAEGVKDDDLLVLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANILLALGMQMI 187

Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            PT+IS+PFK++ FV +DGW++LV  LV S+
Sbjct: 188 SPTTISVPFKLLLFVALDGWAMLVHGLVLSY 218


>gi|134294005|ref|YP_001117741.1| type III secretion system protein [Burkholderia vietnamiensis G4]
 gi|134137162|gb|ABO58276.1| Yop virulence translocation R [Burkholderia vietnamiensis G4]
          Length = 224

 Score =  182 bits (461), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 71/211 (33%), Positives = 122/211 (57%), Gaps = 5/211 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V    +   L IAP   +MVT + + ++V  +LR+ +G+  VPPNLV+  +AL ++ ++M
Sbjct: 8   VALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIM 67

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAI-----QRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
           +P      +       +     +TA           P   F+ ++TR++D   F+  A S
Sbjct: 68  APVGMSIRDALQARHFDAAGQLSTADIGVLADAALPPIKDFLVSHTRQRDREFFVRTATS 127

Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
                        +  +L+PSF ++EL ++F+IGF+I + F+++D++VA I++A+GM M+
Sbjct: 128 VWPKNRADGIKDDDLLVLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANILLALGMQMI 187

Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            PT+IS+PFK++ FV +DGWSLLV  LV S+
Sbjct: 188 SPTTISVPFKLLLFVALDGWSLLVHGLVLSY 218


>gi|107025882|ref|YP_623393.1| type III secretion system protein [Burkholderia cenocepacia AU
           1054]
 gi|116692934|ref|YP_838467.1| type III secretion system protein [Burkholderia cenocepacia HI2424]
 gi|170737801|ref|YP_001779061.1| Yop virulence translocation R [Burkholderia cenocepacia MC0-3]
 gi|206563883|ref|YP_002234646.1| type III secretion system protein [Burkholderia cenocepacia J2315]
 gi|254250206|ref|ZP_04943526.1| Yop virulence translocation protein R [Burkholderia cenocepacia
           PC184]
 gi|18092662|gb|AAK50140.1| BcscR [Burkholderia cenocepacia]
 gi|105895256|gb|ABF78420.1| Yop virulence translocation R [Burkholderia cenocepacia AU 1054]
 gi|116650934|gb|ABK11574.1| Yop virulence translocation R [Burkholderia cenocepacia HI2424]
 gi|124876707|gb|EAY66697.1| Yop virulence translocation protein R [Burkholderia cenocepacia
           PC184]
 gi|169819989|gb|ACA94571.1| Yop virulence translocation R [Burkholderia cenocepacia MC0-3]
 gi|198039923|emb|CAR55900.1| type III secretion system protein [Burkholderia cenocepacia J2315]
          Length = 224

 Score =  182 bits (461), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 70/211 (33%), Positives = 122/211 (57%), Gaps = 5/211 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V    +   L IAP   +MVT + + ++V  +LR+ +G+  VPPNLV+  +AL ++ ++M
Sbjct: 8   VALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIM 67

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAI-----QRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
           +P      +       +     +T+           P   F+ ++TR++D   F+  A S
Sbjct: 68  APVGMSIRDALQARHFDASGQLSTSDIGALADAALPPIKDFLVSHTRQRDREFFVRTATS 127

Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
                        +  +L+PSF ++EL ++F+IGF+I + F+++D++VA I++A+GM M+
Sbjct: 128 VWPKNRADGIKDDDLLVLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANILLALGMQMI 187

Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            PT+IS+PFK++ FV +DGWSLLV  LV S+
Sbjct: 188 SPTTISVPFKLLLFVALDGWSLLVHGLVLSY 218


>gi|38639349|gb|AAR25815.1| BcscR [Burkholderia multivorans E243]
          Length = 224

 Score =  182 bits (461), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 71/211 (33%), Positives = 122/211 (57%), Gaps = 5/211 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V    +   L IAP   +MVT + + ++V  +LR+ +G+  VPPNLV+  +AL ++ ++M
Sbjct: 8   VALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIM 67

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAI-----QRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
           +P      +       +     +TA           P   F+ ++TR++D   F+  A S
Sbjct: 68  APVGMSIRDALQARHFDTSGQLSTADVGVLADAALPPIKDFLVSHTRQRDRDFFVRTATS 127

Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
                        +  +L+PSF ++EL ++F+IGF+I + F+++D++V  I++A+GM M+
Sbjct: 128 VWPKNRADAIRDHDLLVLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVPNILLALGMQMI 187

Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            PT+IS+PFK++ FVL+DGWSLLV  LV S+
Sbjct: 188 SPTTISVPFKLLLFVLLDGWSLLVHGLVLSY 218


>gi|115379117|ref|ZP_01466241.1| type III secretion apparatus protein, YscR/HrcR family [Stigmatella
           aurantiaca DW4/3-1]
 gi|115363900|gb|EAU63011.1| type III secretion apparatus protein, YscR/HrcR family [Stigmatella
           aurantiaca DW4/3-1]
          Length = 241

 Score =  182 bits (461), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 72/247 (29%), Positives = 139/247 (56%), Gaps = 9/247 (3%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           M R+C  A++++         +L                +    +  +LS+ P  ++M+T
Sbjct: 1   MTRFCLAAVWVLPGWAAAGGETLAQASQAGNP-------LTMMAVLAVLSLLPFAVVMLT 53

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F +  +V S+ R+ MG    PP +V+  LA  ++ ++MSP + R  E+G +   + +  
Sbjct: 54  SFSKIAVVLSLARSAMGTQQAPPTVVLTGLAAVLSAHIMSPVMARMYEVGREAARDAESG 113

Query: 121 ET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
                A++R AEP   F+  +   ++ S F+++A       + T+    +  +++P+F+I
Sbjct: 114 AQILAAVERTAEPLRAFLVKHGSAEERSRFVELARELRPPEEATQVQEGDLFVVVPAFVI 173

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           +EL+ +F++GFL+ LPFL++DM++A I++A+GM  L P+ +SLPFK++ FV +DGW LL 
Sbjct: 174 TELKEAFQMGFLLFLPFLVLDMVIANILLALGMQSLSPSQVSLPFKILLFVTVDGWPLLA 233

Query: 239 ENLVKSF 245
           + L++ +
Sbjct: 234 QGLIQGY 240


>gi|115358964|ref|YP_776102.1| type III secretion system protein [Burkholderia ambifaria AMMD]
 gi|170704157|ref|ZP_02894758.1| Yop virulence translocation R [Burkholderia ambifaria IOP40-10]
 gi|171323089|ref|ZP_02911721.1| Yop virulence translocation R [Burkholderia ambifaria MEX-5]
 gi|172063756|ref|YP_001811407.1| Yop virulence translocation R [Burkholderia ambifaria MC40-6]
 gi|115284252|gb|ABI89768.1| Yop virulence translocation R [Burkholderia ambifaria AMMD]
 gi|170130935|gb|EDS99661.1| Yop virulence translocation R [Burkholderia ambifaria IOP40-10]
 gi|171091518|gb|EDT37148.1| Yop virulence translocation R [Burkholderia ambifaria MEX-5]
 gi|171996273|gb|ACB67191.1| Yop virulence translocation R [Burkholderia ambifaria MC40-6]
          Length = 224

 Score =  182 bits (461), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 70/211 (33%), Positives = 122/211 (57%), Gaps = 5/211 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V    +   L IAP   +MVT + + ++V  +LR+ +G+  VPPNLV+  +AL ++ ++M
Sbjct: 8   VALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIM 67

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAI-----QRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
           +P      +       +     +T+           P   F+ ++TR++D   F+  A S
Sbjct: 68  APVGMSIRDALQSRHFDASGQLSTSDIGVLADAALPPIKDFLVSHTRQRDREFFVRTATS 127

Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
                        +  +L+PSF ++EL ++F+IGF+I + F+++D++VA I++A+GM M+
Sbjct: 128 VWPKNRADGIKDDDLLVLVPSFTLAELTKAFQIGFVIYIVFIVVDLLVANILLALGMQMI 187

Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            PT+IS+PFK++ FV +DGWSLLV  LV S+
Sbjct: 188 SPTTISVPFKLLLFVALDGWSLLVHGLVLSY 218


>gi|58579704|ref|YP_198720.1| type III secretion system protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58424298|gb|AAW73335.1| hrpD2 [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 226

 Score =  181 bits (460), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 66/206 (32%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
              +  +L + P   ++VT + + ++V  +LR  +G+  VPPN+V+  +AL ++ +VM+P
Sbjct: 21  LLLVVIMLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAP 80

Query: 102 TLDRSIEMGIQPLMNNQITETTA--IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
               + +   Q              +    EPF  F+  +T E++ + FM  A       
Sbjct: 81  VGMEAFKAA-QNYGAGSDNSRIVVLLDACREPFRQFLLKHTPEREKAFFMRSAQQIWPKD 139

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
             T     +  IL P+F +SEL  +F IGFL+ L F++ID++VA  +MAMG+  + PT++
Sbjct: 140 KATTLKSDDLLILAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNV 199

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++PFK++ FV +DGWS+L+  LV S+
Sbjct: 200 AIPFKLLLFVAMDGWSMLIHGLVLSY 225


>gi|163738043|ref|ZP_02145459.1| flagellar biosynthetic protein FliP [Phaeobacter gallaeciensis
           BS107]
 gi|163742561|ref|ZP_02149947.1| flagellar biosynthetic protein FliP [Phaeobacter gallaeciensis
           2.10]
 gi|161384146|gb|EDQ08529.1| flagellar biosynthetic protein FliP [Phaeobacter gallaeciensis
           2.10]
 gi|161388659|gb|EDQ13012.1| flagellar biosynthetic protein FliP [Phaeobacter gallaeciensis
           BS107]
          Length = 247

 Score =  181 bits (460), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 94/225 (41%), Positives = 141/225 (62%), Gaps = 3/225 (1%)

Query: 21  SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
           S+    +++    SIS   ++   + T+LS+AP LLIM+TCFP  + V SILR  +G+  
Sbjct: 24  SAQDLSLSLGDGQSISARSIQLILLITVLSLAPGLLIMITCFPFLVTVLSILRQAIGLQQ 83

Query: 81  VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
            PPN+++ISLALF+T++VM P    +   GI PL+  Q+   T ++R  +PF VFM    
Sbjct: 84  APPNMLMISLALFLTYFVMEPVFTEAWTTGINPLIEEQLDVETGLERALQPFRVFMAARL 143

Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
              D   F  +A        I          L+ SFM+SE+ R+F++GFL+ LPFL+ID+
Sbjct: 144 ---DPDTFYAIADLRPSTAGIDPTADAPLSTLVSSFMLSEIARAFQVGFLVFLPFLVIDL 200

Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +VA ++M+MGMMM+PP  +S+PFK+ FFV+ DGWSL+   LV+S+
Sbjct: 201 VVAAVLMSMGMMMVPPAVVSMPFKLAFFVVADGWSLIASALVRSY 245


>gi|148269377|ref|YP_001243837.1| flagellar biosynthesis protein FliP [Thermotoga petrophila RKU-1]
 gi|170288035|ref|YP_001738273.1| flagellar biosynthetic protein FliP [Thermotoga sp. RQ2]
 gi|281411926|ref|YP_003346005.1| flagellar biosynthetic protein FliP [Thermotoga naphthophila
           RKU-10]
 gi|147734921|gb|ABQ46261.1| flagellar biosynthetic protein FliP [Thermotoga petrophila RKU-1]
 gi|170175538|gb|ACB08590.1| flagellar biosynthetic protein FliP [Thermotoga sp. RQ2]
 gi|281373029|gb|ADA66591.1| flagellar biosynthetic protein FliP [Thermotoga naphthophila
           RKU-10]
          Length = 249

 Score =  181 bits (460), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 78/196 (39%), Positives = 119/196 (60%), Gaps = 7/196 (3%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +L++ T F R I+VFS+ R  +G    PPN V+I LALF+TF +M P  +      I 
Sbjct: 56  PSILVLFTSFTRIIVVFSLFRNALGTRQTPPNQVMIGLALFLTFLIMQPVWNDIYNNAIT 115

Query: 113 PLMNNQITETTAIQRVAEPFWVFM---RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169
           P +N +I      QRV      FM     N   +D    +    + +   +I K +    
Sbjct: 116 PYLNKEIGYQEMFQRVNTRIREFMINELKNHHNEDNVFML----AKNSGIEIAKIEEAPN 171

Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
            +LIP+F++ EL  +F++G ++ +PF++IDMIVA+I++AMGM+M+PP  +SLPFK++ FV
Sbjct: 172 AVLIPAFVLGELEVAFKMGVVLYVPFIVIDMIVASILLAMGMIMIPPVFVSLPFKILIFV 231

Query: 230 LIDGWSLLVENLVKSF 245
           + +GW LLVE L+KSF
Sbjct: 232 MANGWDLLVEGLIKSF 247


>gi|261341515|ref|ZP_05969373.1| flagellar biosynthetic protein FliP [Enterobacter cancerogenus ATCC
           35316]
 gi|288316313|gb|EFC55251.1| flagellar biosynthetic protein FliP [Enterobacter cancerogenus ATCC
           35316]
          Length = 250

 Score =  181 bits (460), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 87/242 (35%), Positives = 137/242 (56%), Gaps = 7/242 (2%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI-VRTFGIFTILSIAPILLIMVTCF 62
           +      LV+P+L+ A   +    +          + +    + T+L + P++L+M+TCF
Sbjct: 11  WLLLGGLLVSPQLLAANGDITLFSSSTTAGGQDYNVKIEILILMTLLGLLPVMLMMMTCF 70

Query: 63  PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122
            RFIIV +ILR  +G+   PPN ++  +AL +T  VM P      +  I P  N++IT  
Sbjct: 71  TRFIIVLAILRQALGLQQSPPNKILTGIALALTLLVMRPVWTTIYQDAIVPFQNDEITMK 130

Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182
            A  +   P   FM   T  K +S  M +A  +            +  ++ P++++SEL+
Sbjct: 131 QAFGKAEAPLKNFMLAQTSNKAMSQMMTIAGVTG------DPKEQDLTVVTPAYLLSELK 184

Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
            +F+IGF+I +PFL+ID+IVA+I+MAMGMMML P  +SLPFK++ FVL DGW+L+V  L 
Sbjct: 185 TAFQIGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLIVGTLT 244

Query: 243 KS 244
            S
Sbjct: 245 SS 246


>gi|30524904|gb|AAP34349.1|AF499777_17 HrcR [Xanthomonas axonopodis pv. glycines]
          Length = 200

 Score =  181 bits (460), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 65/200 (32%), Positives = 114/200 (57%), Gaps = 3/200 (1%)

Query: 48  ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107
           +L + P   ++VT + + ++V  +LR  +G+  VPPN+V+  +AL ++ +VM+P    + 
Sbjct: 1   MLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF 60

Query: 108 EMGIQPLMNNQITETTA--IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165
           +   Q              +    EPF  F+  +TRE++ + FM  A             
Sbjct: 61  KAA-QNYGAGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKAATLK 119

Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225
             +  +L P+F +SEL  +F IGFL+ L F++ID++VA  +MAMG+  + PT++++PFK+
Sbjct: 120 SDDLLVLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKL 179

Query: 226 IFFVLIDGWSLLVENLVKSF 245
           + FV +DGWS+L+  LV S+
Sbjct: 180 LLFVAMDGWSMLIHGLVLSY 199


>gi|238752883|ref|ZP_04614348.1| Lateral flagellar export/assembly protein (FliP-like) [Yersinia
           rohdei ATCC 43380]
 gi|238708922|gb|EEQ01175.1| Lateral flagellar export/assembly protein (FliP-like) [Yersinia
           rohdei ATCC 43380]
          Length = 248

 Score =  181 bits (459), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 89/241 (36%), Positives = 141/241 (58%), Gaps = 7/241 (2%)

Query: 5   CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI-VRTFGIFTILSIAPILLIMVTCFP 63
            F +  L +P L+  +  +     +P        + +    + T+L + PI+++M+TCF 
Sbjct: 10  LFISGLLYSPLLLAQEGGITLFSTVPTAAGKDFNVKIEILILMTLLGLLPIMMLMMTCFT 69

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
           RFIIV +ILR  +G+   PPN V+  +AL +T  VM P   +  E  + P  N++IT   
Sbjct: 70  RFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKIHEDAVIPFQNDEITLPQ 129

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
           A++R   P   +M   T  K L   MD+A  +       +    +  ++ P++++SEL+ 
Sbjct: 130 ALRRAEIPLKNYMLAQTSTKSLEQMMDIAQVTG------EPQQQDLTVVTPAYVLSELKT 183

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
           +F+IGF+I +PFL+ID+IVA+I+MAMGMMML P  +SLPFK++ FVL DGW+L+V  L  
Sbjct: 184 AFQIGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLIVGTLTA 243

Query: 244 S 244
           S
Sbjct: 244 S 244


>gi|323972752|gb|EGB67952.1| flagellar biosynthetic protein FliP [Escherichia coli TA007]
          Length = 221

 Score =  181 bits (459), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 72/198 (36%), Positives = 113/198 (57%), Gaps = 9/198 (4%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           ++      L+L+TP L FA+  L  + + P      +W   V+T    T L+  P +L+M
Sbjct: 4   LLSVAPVLLWLITP-LAFAQ--LPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +
Sbjct: 61  MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   A+++ A+P   FM   TRE DL LF  +A++      +   + +  RIL+P+++ 
Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVT 176

Query: 179 SELRRSFEIGFLIILPFL 196
           SEL+ +F+IGF I  PF 
Sbjct: 177 SELKTAFQIGFTIFHPFF 194


>gi|269963170|ref|ZP_06177505.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832134|gb|EEZ86258.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 216

 Score =  181 bits (459), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 71/208 (34%), Positives = 125/208 (60%), Gaps = 2/208 (0%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +       +L++ P + +M T F +  +VFS+LR  +G+  +PPN+ +  LA+ ++ ++M
Sbjct: 8   LNLIVTLALLALIPFIAMMATSFVKLAVVFSLLRNALGVQQIPPNMALYGLAIILSIFIM 67

Query: 100 SPTLDRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
           +P    + +   Q    + +  +    I+   +P+  F++ + RE +   F D A +   
Sbjct: 68  APVGFETYDYVTQHEISLEDSESIEGLIESGLQPYREFLKTHIRETESVFFTDAARTLWP 127

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
              + + +     +L+P+F +SEL R+FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ P 
Sbjct: 128 QKYVDRLESDSLLLLLPAFTVSELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPM 187

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +ISLPFK++ FVL+DGW+ L   LV S+
Sbjct: 188 TISLPFKLLLFVLLDGWTKLTHGLVLSY 215


>gi|85710189|ref|ZP_01041254.1| Flagellar transport protein FliP [Erythrobacter sp. NAP1]
 gi|85688899|gb|EAQ28903.1| Flagellar transport protein FliP [Erythrobacter sp. NAP1]
          Length = 243

 Score =  181 bits (459), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 90/218 (41%), Positives = 141/218 (64%), Gaps = 4/218 (1%)

Query: 28  NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVI 87
           +   + +  ++ ++   + ++L+I P +++M+T F R +IV SILR  +G+   PP  V+
Sbjct: 29  DGTGEDTPLSFSIQLLLVISLLTILPAIVLMMTSFLRILIVLSILRQALGLQGSPPTQVL 88

Query: 88  ISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147
           + L+LF++ +VM+PTLD   E+ I+P     I    AI    E F  FM   TRE +L +
Sbjct: 89  VGLSLFLSLFVMAPTLDTVSELAIEPYSAGTIGADAAIASAGEAFHTFMLRQTREANLVM 148

Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
           F D+A            D I + IL+P+F+ SEL  +F+IGF++ LPFL+ID++VA+++M
Sbjct: 149 FADIAGIG----AFADADAIPFSILLPAFVTSELETAFQIGFMLFLPFLVIDLVVASVLM 204

Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++GMMML PT ISLPFK++ FVL+DGWSLL+ +L  SF
Sbjct: 205 SLGMMMLSPTIISLPFKLLLFVLVDGWSLLMGSLAMSF 242


>gi|322432985|ref|YP_004210234.1| flagellar biosynthetic protein FliP [Acidobacterium sp. MP5ACTX9]
 gi|321165212|gb|ADW70916.1| flagellar biosynthetic protein FliP [Acidobacterium sp. MP5ACTX9]
          Length = 236

 Score =  180 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 80/240 (33%), Positives = 140/240 (58%), Gaps = 6/240 (2%)

Query: 6   FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65
             AL  V      A ++ + +       + + W +    + T LS+ P LL+ +T F R 
Sbjct: 2   IAALGSVFLHAPGATANANGLQITGLGGASAPWTI--VVLLTFLSLIPSLLLCITPFARL 59

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
           +IVF  LR  +G+ + P N  +I L++ MTF++M P      +  + PL    IT   A+
Sbjct: 60  LIVFHFLRQALGLQTTPSNQTLIGLSMIMTFFLMQPVGAVIYDTAVTPLQAGTITPLQAL 119

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
           +R   P   FM +  R+KD++LF+++A     +        + +R+++P++++SEL+  F
Sbjct: 120 ERAGTPMRQFMAHYVRDKDVALFLELAKEPRPH----NVQDLSFRVMLPAYILSELKAGF 175

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +IG ++ LPFL++DM+VA+I  ++GMM LPP  IS P K++ F+++DGW LL+ +L++SF
Sbjct: 176 QIGTVLFLPFLVVDMVVASITTSVGMMQLPPVVISTPLKLLLFLMVDGWHLLISSLMRSF 235


>gi|320175462|gb|EFW50561.1| Flagellar biosynthesis protein FliP [Shigella dysenteriae CDC
           74-1112]
          Length = 220

 Score =  180 bits (457), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 88/247 (35%), Positives = 132/247 (53%), Gaps = 31/247 (12%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           M R    A  L+      A + L  + + P      +W   V+T    T L+  P +L+M
Sbjct: 1   MRRLLSAAPVLLWLVTPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +
Sbjct: 61  MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   A+++ A+P   FM   TRE DL LF  +A++      +   + +  RIL+P+++ 
Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILLPAYVT 176

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL                         MA+GMMM+PP +I+LPFK++ FVL+DGW LLV
Sbjct: 177 SEL-------------------------MALGMMMVPPATIALPFKLMLFVLVDGWQLLV 211

Query: 239 ENLVKSF 245
            +L +SF
Sbjct: 212 GSLAQSF 218


>gi|254254345|ref|ZP_04947662.1| Type III secretory pathway component EscR [Burkholderia dolosa
           AUO158]
 gi|124898990|gb|EAY70833.1| Type III secretory pathway component EscR [Burkholderia dolosa
           AUO158]
          Length = 224

 Score =  180 bits (457), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 72/211 (34%), Positives = 122/211 (57%), Gaps = 5/211 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V    +   L IAP   +MVT + + ++V  +LR+ +G+  VPPNLV+  +AL ++ ++M
Sbjct: 8   VALIAVIAALGIAPFAALMVTSYTKLVVVLGLLRSALGIQQVPPNLVLNGIALILSLFIM 67

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAI-----QRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
           +P      +       +     +TA           P   F+ ++TR++D   F+  A S
Sbjct: 68  APVGMSIRDALQARHFDASGQLSTADVGALADAALPPIKEFLVSHTRQRDREFFVRTATS 127

Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
              N         +  +L+PSF ++EL ++F IGF+I + F+++D++VA I++A+GM M+
Sbjct: 128 VWPNNRADAIKDDDLLVLVPSFTLAELTKAFHIGFVIYIVFIVVDLLVANILLALGMQMI 187

Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            PT+IS+PFK++ FV +DGWSLLV  LV S+
Sbjct: 188 APTTISVPFKLLLFVALDGWSLLVHGLVLSY 218


>gi|182412233|ref|YP_001817299.1| flagellar biosynthetic protein FliP [Opitutus terrae PB90-1]
 gi|177839447|gb|ACB73699.1| flagellar biosynthetic protein FliP [Opitutus terrae PB90-1]
          Length = 302

 Score =  180 bits (457), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 87/224 (38%), Positives = 142/224 (63%), Gaps = 5/224 (2%)

Query: 23  LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82
           L   +         +  V+   + T+LS+AP +++++T F R +IV   +RT +G  S P
Sbjct: 83  LSIGLEGTNQQGQVSVAVQIVLVMTLLSVAPSIVLLMTTFTRLVIVLGFVRTALGTPSAP 142

Query: 83  PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142
            N ++I LALF+TF++M P  DR  +  ++P ++ QIT T A+     P   FM   TR 
Sbjct: 143 SNQIVIGLALFLTFFLMGPVFDRVNQEALRPYLDGQITATQALDHATVPLKEFMLKQTRT 202

Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202
           +D+  F+ +          T    +  R++IP+F+ISEL+ +F++GFL+ LPFL+ID +V
Sbjct: 203 RDIEYFLQLGGFGP-----TAVKDLPIRVVIPAFVISELQTAFQMGFLLFLPFLVIDFLV 257

Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           A+++MAMGMMM+PP +++LP K++ FVL+DGW L+V +LV+SF+
Sbjct: 258 ASVLMAMGMMMMPPVTVALPLKLLLFVLVDGWHLVVRSLVQSFV 301


>gi|15643461|ref|NP_228507.1| flagellar biosynthesis protein FliP [Thermotoga maritima MSB8]
 gi|4981221|gb|AAD35780.1|AE001741_13 flagellar biosynthesis protein FliP [Thermotoga maritima MSB8]
          Length = 249

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 77/196 (39%), Positives = 118/196 (60%), Gaps = 7/196 (3%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +L++ T F R I+VFS+ R  +G    PPN V+I LALF+TF +M P  +      I 
Sbjct: 56  PSILVLFTSFTRIIVVFSLFRNALGTRQTPPNQVMIGLALFLTFLIMQPVWNDIYNNAIT 115

Query: 113 PLMNNQITETTAIQRVAEPFWVFM---RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169
           P +N +       QRV      FM     N   +D    +    + +   +I K +    
Sbjct: 116 PYLNKETGYQEMFQRVNTRIREFMINELKNHHNEDNVFML----AKNSGIEIAKIEEAPN 171

Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
            +LIP+F++ EL  +F++G ++ +PF++IDMIVA+I++AMGM+M+PP  +SLPFK++ FV
Sbjct: 172 AVLIPAFVLGELEVAFKMGVVLYVPFIVIDMIVASILLAMGMIMIPPVFVSLPFKILIFV 231

Query: 230 LIDGWSLLVENLVKSF 245
           + +GW LLVE L+KSF
Sbjct: 232 MANGWDLLVEGLIKSF 247


>gi|332298229|ref|YP_004440151.1| flagellar biosynthetic protein FliP [Treponema brennaborense DSM
           12168]
 gi|332181332|gb|AEE17020.1| flagellar biosynthetic protein FliP [Treponema brennaborense DSM
           12168]
          Length = 277

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 80/220 (36%), Positives = 127/220 (57%), Gaps = 6/220 (2%)

Query: 29  IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
            P       + V+   + TIL++AP +LI++TCF RF IV   ++  + +  VPP  V+ 
Sbjct: 61  SPQTGQEVAFSVQLLLLLTILTLAPSILILLTCFLRFSIVLDFIKRALSLQQVPPTAVLN 120

Query: 89  SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN--TREKDLS 146
            +A FMT ++M PT     +   +PL + +I    A      P  +FM     T    ++
Sbjct: 121 GIAFFMTLFIMWPTFTDIYDNSFKPLSDGEIGIEAAFTEAEAPLRIFMFKQMGTNTDYIT 180

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
           LFM M       T       +   +LIP+++++EL  +F+IG L+ +PF++IDM+VA+++
Sbjct: 181 LFMSMGGLDRPQTLA----DVPSHVLIPAYILNELTVAFKIGVLLYIPFIVIDMVVASVL 236

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           M+MGM+MLPP  IS+PFK++ FVLIDGW LL + L  S +
Sbjct: 237 MSMGMIMLPPVQISMPFKLMLFVLIDGWGLLTQQLFNSIV 276


>gi|289663757|ref|ZP_06485338.1| type III secretion system protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289668179|ref|ZP_06489254.1| type III secretion system protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 214

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 63/194 (32%), Positives = 111/194 (57%), Gaps = 1/194 (0%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P   ++VT + +  +V  +LR  +G+  VPPN+V+  +AL ++ +VM+P    + +    
Sbjct: 20  PFAAMVVTSYTKIAVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAFKAAQN 79

Query: 113 PLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
               ++      +     EPF  F+  +TRE++ + FM  A               +  +
Sbjct: 80  YGAGSENNRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDKADALKSDDLLV 139

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLI 231
           L P+F +SEL  +F IGFL+ L F++ID++VA  +MAMG+  + PT++++PFK++ FV +
Sbjct: 140 LAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKLLLFVAM 199

Query: 232 DGWSLLVENLVKSF 245
           DGWS+L+  LV S+
Sbjct: 200 DGWSMLIHGLVLSY 213


>gi|308050042|ref|YP_003913608.1| flagellar biosynthetic protein FliP [Ferrimonas balearica DSM 9799]
 gi|307632232|gb|ADN76534.1| flagellar biosynthetic protein FliP [Ferrimonas balearica DSM 9799]
          Length = 243

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 81/206 (39%), Positives = 127/206 (61%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +    + T LS  P +L+M+T F R I+V ++LR  +G+   PPN ++I +AL +T ++M
Sbjct: 39  MEILALMTALSFLPAMLLMMTSFTRIIVVLAVLRQALGLQQSPPNKLLIGIALVLTLFIM 98

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            P      E    P  N ++T   A+     P   FM   TRE DL   + +A  S +  
Sbjct: 99  RPVWTEIHEQAFLPYDNGELTLKQAVAVAEVPLRTFMLGQTRETDLEQMLKIAGESTQ-- 156

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                + + + +L+P+F++SEL+ +F+IGFL+ +PFL+ID++VA+++M+MGMMML P  I
Sbjct: 157 --LSAEEVPFSVLMPAFVLSELKTAFQIGFLLFIPFLVIDLVVASVLMSMGMMMLSPLII 214

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FVL+DGWS+ V  L  SF
Sbjct: 215 SLPFKLMVFVLVDGWSMTVGTLAASF 240


>gi|21230683|ref|NP_636600.1| type III secretion system protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769322|ref|YP_244084.1| type III secretion system protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188992474|ref|YP_001904484.1| type III secretion system protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|325921929|ref|ZP_08183740.1| HrcR [Xanthomonas gardneri ATCC 19865]
 gi|21112271|gb|AAM40524.1| HrcR protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66574654|gb|AAY50064.1| HrcR protein [Xanthomonas campestris pv. campestris str. 8004]
 gi|167734234|emb|CAP52442.1| HrcR protein [Xanthomonas campestris pv. campestris]
 gi|325547631|gb|EGD18674.1| HrcR [Xanthomonas gardneri ATCC 19865]
          Length = 214

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 115/205 (56%), Gaps = 1/205 (0%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
              +  +L + P   ++VT + + ++V  +LR  +G+  VPPN+V+  +AL ++ +VM+P
Sbjct: 9   LLLVVIMLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAP 68

Query: 102 TLDRSIEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD 160
               + +           +    +     EPF  F+  +TRE++ + F+  A        
Sbjct: 69  VGMEAFKAAQNYSPGADNSRVVVLLDACREPFRQFLLKHTREREKAFFIRSAQQIWPKDK 128

Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
                  +  +L P+F +SEL  +F IGFL+ L F++ID++VA  +MAMG+  + PT+++
Sbjct: 129 ADTLKPDDLLVLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVA 188

Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245
           +PFK++ FV +DGWS+L+  LV S+
Sbjct: 189 IPFKLLLFVALDGWSMLIHGLVLSY 213


>gi|21241175|ref|NP_640757.1| type III secretion system protein [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|78045978|ref|YP_362153.1| type III secretion system protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325927673|ref|ZP_08188901.1| HrcR protein [Xanthomonas perforans 91-118]
 gi|4494848|gb|AAD21321.1| HrcR [Xanthomonas euvesicatoria]
 gi|21106482|gb|AAM35293.1| HrcR protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|78034408|emb|CAJ22053.1| HrcR protein [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|325541874|gb|EGD13388.1| HrcR protein [Xanthomonas perforans 91-118]
          Length = 214

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
              +  +L + P   ++VT + + ++V  +LR  +G+  VPPN+V+  +AL ++ +VM+P
Sbjct: 9   LLLVVIMLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAP 68

Query: 102 TLDRSIEMGIQPLMNNQITETTA--IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
               + +   Q              +    EPF  F+  +TRE++ + FM  A       
Sbjct: 69  VGMEAFKAA-QNYGAGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKD 127

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                   +  +L P+F +SEL  +F IGFL+ L F++ID++VA  +MAMG+  + PT++
Sbjct: 128 KAATLKSDDLLVLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNV 187

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++PFK++ FV +DGWS+L+  LV S+
Sbjct: 188 AIPFKLLLFVAMDGWSMLIHGLVLSY 213


>gi|166714030|ref|ZP_02245237.1| type III secretion system protein [Xanthomonas oryzae pv. oryzicola
           BLS256]
 gi|111146915|gb|ABH07400.1| HrcR [Xanthomonas oryzae pv. oryzicola]
          Length = 214

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 116/205 (56%), Gaps = 1/205 (0%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
              +  +L + P   ++VT + + ++V  +LR  +G+  VPPN+V+  +AL ++ +VM+P
Sbjct: 9   LLLVVIMLGLLPFAALVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAP 68

Query: 102 TLDRSIEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD 160
               + +        +  +    +     EPF  F+  +TRE++ + FM  A        
Sbjct: 69  VGMEAFKAAQNYGAGSDNSRIVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDK 128

Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
                  +  IL P+F +SEL  +F IGFL+ L F++ID++VA  +MAMG+  + PT+++
Sbjct: 129 AATLKSDDLLILAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVA 188

Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245
           +PFK++ FV +DGWS+L+  LV S+
Sbjct: 189 IPFKLLLFVAMDGWSILIHGLVLSY 213


>gi|285018170|ref|YP_003375881.1| flagellar biosynthetic protein flip [Xanthomonas albilineans GPE
           PC73]
 gi|283473388|emb|CBA15893.1| probable flagellar biosynthetic protein flip [Xanthomonas
           albilineans]
          Length = 271

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 91/236 (38%), Positives = 137/236 (58%), Gaps = 10/236 (4%)

Query: 16  LVFAKSSLHDVMNIPA------DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVF 69
              A++S   + ++P            +  ++T  + T +++ P +L+++T F R  IV 
Sbjct: 37  AATAQNSGPTLPSLPDVNVGKIGAQSVSLPLQTLLLMTAITLLPSMLLVLTAFTRITIVL 96

Query: 70  SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129
            +LR  MG G  P N V++ LALF+T  VM P  +++ + G+ P +N QI   TA     
Sbjct: 97  GLLRQAMGTGQTPSNQVLMGLALFLTALVMMPVWEKAWDHGMSPYLNGQIDFQTAWTLTT 156

Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189
           +P   FM    RE DL  F  MA     N   +  D I + +L+ SF+ SEL+ +FEIGF
Sbjct: 157 QPLRAFMLAQIRESDLMTFAGMAG----NGTYSSPDAIPFPVLVASFVTSELKTAFEIGF 212

Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LI +PF+IID++VA+++M+MGMMM+ P  IS PFK++ FVL+DGW L V  L  SF
Sbjct: 213 LIFIPFVIIDLVVASVLMSMGMMMMSPMLISAPFKILLFVLVDGWVLTVGTLAASF 268


>gi|145301463|ref|YP_001144302.1| type III secretion system protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|38201229|emb|CAD56764.1| ascR protein [Aeromonas salmonicida subsp. salmonicida]
 gi|66947958|emb|CAE83095.1| AscR protein [Aeromonas salmonicida subsp. salmonicida]
 gi|142856345|gb|ABO92554.1| AscR protein [Aeromonas salmonicida subsp. salmonicida A449]
 gi|145284338|gb|ABP51919.1| AscR [Aeromonas veronii bv. sobria]
          Length = 217

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 69/208 (33%), Positives = 120/208 (57%), Gaps = 2/208 (0%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +       +L++ P + +M T F +  +VFS+LR  +G+  +PPN+ +  LA+ ++ YVM
Sbjct: 8   LNLIVGLALLALLPFIAVMATSFVKLAVVFSLLRNALGVQQIPPNMAMYGLAIILSIYVM 67

Query: 100 SPT--LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
           +P     +      +  +    +    +     P+  F++   + ++ + F+D       
Sbjct: 68  APVGFATQDYLRQNEVSLAKSESVEKFLDEGIAPYRDFLKKQIKPREHAFFIDSTKQLWP 127

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
           +    + +     IL+P+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P 
Sbjct: 128 SKYADRLEPDSLLILLPAFTVSELSRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPM 187

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +ISLPFK++ FVL+DGW+ L   LV S+
Sbjct: 188 TISLPFKLLLFVLLDGWARLTHGLVISY 215


>gi|153950465|ref|YP_001399618.1| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis IP
           31758]
 gi|152961960|gb|ABS49421.1| flagellar biosynthetic protein FliP [Yersinia pseudotuberculosis IP
           31758]
          Length = 256

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 88/246 (35%), Positives = 140/246 (56%), Gaps = 8/246 (3%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRT--FGIFTILSIAPILLIM 58
           +I        L+   L+ A+     + N     +   + V+     + T+L + PI+++M
Sbjct: 13  IISRGLLVGGLLYSPLLLAQEGGITLFNTVQTATGQDYNVKIEILILMTLLGLLPIMMLM 72

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +TCF RFIIV +ILR  +G+   PPN V+  +AL +T  VM P   +  +  + P   ++
Sbjct: 73  MTCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKIHQDAVIPFQQDE 132

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           IT + A+ R   P   +M   T  K L   M +A  S       +    +  ++ P++++
Sbjct: 133 ITLSQALGRAEVPLKNYMLAQTSTKSLDQMMAIAQVSG------EPQQQDLSVVTPAYVL 186

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF+I +PFL+ID+IVA+I+MAMGMMML P  +SLPFK++ FVL DGW+L+V
Sbjct: 187 SELKTAFQIGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLMV 246

Query: 239 ENLVKS 244
             L  S
Sbjct: 247 GTLTAS 252


>gi|319790413|ref|YP_004152046.1| flagellar biosynthetic protein FliP [Thermovibrio ammonificans
           HB-1]
 gi|317114915|gb|ADU97405.1| flagellar biosynthetic protein FliP [Thermovibrio ammonificans
           HB-1]
          Length = 232

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 90/236 (38%), Positives = 153/236 (64%), Gaps = 5/236 (2%)

Query: 10  FLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVF 69
             +T  L   ++    +  + A L      ++   + T+L++ P LLI +T F R +I+ 
Sbjct: 1   MFLTATLFPLQAQGATLNELTAKLGNLDITLKLVFLVTLLAVVPSLLIALTSFTRIVIIL 60

Query: 70  SILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129
           S+LR  +G    PPN V+I+L+LF+TF+ M+PT ++  +  ++P +N QIT   A++R +
Sbjct: 61  SLLRHALGTPQTPPNQVVIALSLFLTFFTMAPTFEKIDKEALKPYLNGQITAVEAVERAS 120

Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189
            P   FM +NTR++DL LF+D+     RN      + + +  L+P+FM+SE++ +FE  F
Sbjct: 121 RPLKEFMLHNTRKEDLKLFLDI-----RNERPKGPEEVSFVTLVPAFMVSEIKTAFEFVF 175

Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +I LPF++ID++VA+I+M+MGMMM+PP  +SLPFK+I FV+  GW LL+++++ S+
Sbjct: 176 VIFLPFMVIDLLVASILMSMGMMMIPPMMLSLPFKLILFVVSGGWELLIKSIIVSY 231


>gi|56695119|ref|YP_165466.1| flagellar biosynthesis protein FliP [Ruegeria pomeroyi DSS-3]
 gi|56676856|gb|AAV93522.1| flagellar biosynthetic protein FliP [Ruegeria pomeroyi DSS-3]
          Length = 247

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 98/243 (40%), Positives = 153/243 (62%), Gaps = 4/243 (1%)

Query: 5   CFFALFLVTPELVFAKSSLHDV-MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
              A+ L+T  ++    +  D+ +++    S+S   ++   + T+LS+AP L IM+TCFP
Sbjct: 7   VLAAITLLTGAMLAGPVAAQDISLSLGEGGSVSARTIQLILLITVLSLAPGLAIMITCFP 66

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
             + V +ILR G+G+   PPN++I+SLALF+T++VM P    +   GI P+M  ++    
Sbjct: 67  FLVTVLAILRQGIGLQQSPPNMLIVSLALFLTYFVMEPVFTEAWTTGIAPMMAEELALEP 126

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
           A+++   PF  FM       D   F  MA+       +T        +L+PSFM+SE+ R
Sbjct: 127 ALEKAIAPFKAFMAARL---DADTFFAMANLRPDGAALTATPEAPLSVLVPSFMLSEIAR 183

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
           +F+IGFL+ LPFLIID++VA ++M+MGMMM+PP ++SLPFK+ FFVL DGWSL+   LV+
Sbjct: 184 AFQIGFLVFLPFLIIDLVVAAVLMSMGMMMVPPATVSLPFKLAFFVLADGWSLIASALVR 243

Query: 244 SFI 246
           S++
Sbjct: 244 SYM 246


>gi|83647782|ref|YP_436217.1| type III secretion system protein [Hahella chejuensis KCTC 2396]
 gi|83635825|gb|ABC31792.1| Type III secretory pathway, component EscR [Hahella chejuensis KCTC
           2396]
          Length = 215

 Score =  179 bits (454), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 74/210 (35%), Positives = 123/210 (58%), Gaps = 2/210 (0%)

Query: 38  WIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFY 97
             +   G   +LS+ P + IM T F +  +VFS+LR  +G+  +PPN+ +  LA+ ++ Y
Sbjct: 5   QAIPLIGTLVLLSLIPFIAIMTTSFIKLAVVFSLLRNALGIQQIPPNMALYGLAIVLSIY 64

Query: 98  VMSPTLDRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSS 155
           +M+P   +  +   +    ++   +         +P   F+  ++ EK+   F++ A + 
Sbjct: 65  IMAPVGYQIADTVKEKGFDLSQSESLKELANSAIDPMSEFLTKHSSEKERGFFLESAETL 124

Query: 156 HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
                  + D     +L+PSF ISEL+ +FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ 
Sbjct: 125 WPKEYAARLDTNSMLVLVPSFTISELKSAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVS 184

Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           P +ISLPFK++ FVL+DGW+ L   LV S+
Sbjct: 185 PMTISLPFKLLLFVLLDGWTRLTHGLVLSY 214


>gi|238762376|ref|ZP_04623347.1| Lateral flagellar export/assembly protein (FliP-like) [Yersinia
           kristensenii ATCC 33638]
 gi|238699361|gb|EEP92107.1| Lateral flagellar export/assembly protein (FliP-like) [Yersinia
           kristensenii ATCC 33638]
          Length = 248

 Score =  179 bits (454), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 90/246 (36%), Positives = 141/246 (57%), Gaps = 8/246 (3%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRT--FGIFTILSIAPILLIM 58
           +I        L+   L+ A+     + +     +   + V+     + T+L + PI+++M
Sbjct: 5   IISSGLVISALLYSPLLLAQQGGITLFSTAQTAAGQDYNVKIEILILMTLLGLLPIMMLM 64

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +TCF RFIIV +ILR  +G+   PPN V+  +AL +T  VM P   +  +  + P  N++
Sbjct: 65  MTCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKVHQDAVIPFQNDE 124

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           IT   A+ R   P   +M   T  K L   MD+A  S       +    +  I+ P++++
Sbjct: 125 ITLPQALARAEIPLKNYMLAQTSNKSLDQMMDIAQVSG------EPQQQDLTIVTPAYLL 178

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF+I +PFL+ID+IVA+I+MAMGMMML P  +SLPFK++ FVL DGW+L+V
Sbjct: 179 SELKTAFQIGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLIV 238

Query: 239 ENLVKS 244
             L  S
Sbjct: 239 GTLTAS 244


>gi|294665992|ref|ZP_06731255.1| HrcR protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292604240|gb|EFF47628.1| HrcR protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 214

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 65/206 (31%), Positives = 115/206 (55%), Gaps = 3/206 (1%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
              +  +L + P   ++VT + + ++V  +LR  +G+  VPPN+V+  +AL ++ +VM+P
Sbjct: 9   LLLVVIMLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAP 68

Query: 102 TLDRSIEMGIQPLMNNQITETTA--IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
               + +   Q              +    EPF  F+  +TRE++ + FM  A       
Sbjct: 69  VGMEAFKAA-QNYGAGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKD 127

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                   +  +L P+F +SEL  +F IGFL+ L F++ID++VA  +MAMG+  + PT++
Sbjct: 128 KAATLKSDDLLVLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNV 187

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++PFK++ FV +DGWS+L+  LV S+
Sbjct: 188 AIPFKLLLFVAMDGWSMLMHGLVLSY 213


>gi|294828142|ref|NP_712792.2| flagellar biosynthesis protein FliP [Leptospira interrogans serovar
           Lai str. 56601]
 gi|293385989|gb|AAN49810.2| flagellar biosynthesis protein FliP [Leptospira interrogans serovar
           Lai str. 56601]
          Length = 251

 Score =  179 bits (453), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 80/226 (35%), Positives = 141/226 (62%), Gaps = 7/226 (3%)

Query: 23  LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82
           L+  +N       ++  +    + TILS+AP +++ +T F + +IV   +R  + + ++P
Sbjct: 29  LNINVNEAKSPRETSLSLMVLFLVTILSLAPAIVMSLTSFTKIVIVLDFVRRALSIQNLP 88

Query: 83  PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN--- 139
           PN V++ LALFMTF++M+PTL+   E  + P +  +I      ++   P   FM      
Sbjct: 89  PNQVMMGLALFMTFFIMAPTLNTVNEKALGPYLEGKIDTNAFFEKGMIPIREFMMRQIGT 148

Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
           +  KD++LF+ +         +   D +   +LIP+FM+SE++++F IG +I +PF++ID
Sbjct: 149 SGAKDVALFLKIGKVEK----VESFDDVPSYVLIPAFMLSEIKKAFWIGIVIFIPFIVID 204

Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++VA+ +++MG+MMLPP  +SLPFK+I FVL+DGW+L+V  LV+S+
Sbjct: 205 LVVASALLSMGLMMLPPVMVSLPFKLILFVLVDGWNLIVYELVRSY 250


>gi|149178714|ref|ZP_01857297.1| flagellar biosynthetic protein fliP-putative transporter of
           flagellar protein [Planctomyces maris DSM 8797]
 gi|148842412|gb|EDL56792.1| flagellar biosynthetic protein fliP-putative transporter of
           flagellar protein [Planctomyces maris DSM 8797]
          Length = 330

 Score =  179 bits (453), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 81/207 (39%), Positives = 125/207 (60%), Gaps = 14/207 (6%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +LIM T F RF+IVF +LR  +G   +PPN V+ SL+LF+T  VM+P  +++ E GI
Sbjct: 119 APSILIMTTSFIRFVIVFGLLRQALGTQQLPPNQVLTSLSLFLTIMVMAPIWEKAYEEGI 178

Query: 112 QPLMNNQ----ITETTAIQRVAEPFWVFMRNNT----REKDLSLFMDM------AHSSHR 157
            P  N      ++   A Q+   P   FM +          + +F+D       +  +  
Sbjct: 179 VPYTNQTQQAPVSLEAAFQKTVAPLRKFMSDQIELTGNSDTVWMFLDYQQPLPGSPGAES 238

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
                  D +   +L+P++M+SE++ +F IGF + LPF++IDM++++I+++MGMMMLPP 
Sbjct: 239 YQPPRDYDEVPLTVLLPAYMLSEVKTAFLIGFQLYLPFIVIDMVISSILISMGMMMLPPV 298

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKS 244
            ISLPFK++ FVLIDGW L V  L++S
Sbjct: 299 LISLPFKILLFVLIDGWLLTVGMLLES 325


>gi|325917011|ref|ZP_08179250.1| HrcR protein [Xanthomonas vesicatoria ATCC 35937]
 gi|325536762|gb|EGD08519.1| HrcR protein [Xanthomonas vesicatoria ATCC 35937]
          Length = 214

 Score =  179 bits (453), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 114/205 (55%), Gaps = 1/205 (0%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
              +  +L + P   ++VT + + ++V  +LR  +G+  VPPN+V+  +AL ++ +VM+P
Sbjct: 9   LLLVVIMLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAP 68

Query: 102 TLDRSIEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD 160
               + +           +    +     EPF  F+  +T E++ + F+  A        
Sbjct: 69  VGMEAFKAAQNYSPGADNSRVVVLLDACREPFRQFLLKHTHEREKAFFIRSAQQIWPKDK 128

Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
                  +  +L P+F +SEL  +F IGFL+ L F++ID++VA  +MAMG+  + PT+++
Sbjct: 129 ADTLKPDDLLVLAPAFTLSELTDAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVA 188

Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245
           +PFK++ FV +DGWS+L+  LV S+
Sbjct: 189 IPFKLLLFVALDGWSMLIHGLVLSY 213


>gi|54124952|gb|AAV30220.1| AscR [Aeromonas hydrophila]
          Length = 217

 Score =  179 bits (453), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 69/208 (33%), Positives = 120/208 (57%), Gaps = 2/208 (0%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +       +L++ P + +M T F +  +VFS+LR  +G+  +PPN+ +  LA+ ++ YVM
Sbjct: 8   LNLIVGLALLALLPFIAVMATSFVKLAVVFSLLRNALGVQQIPPNMAMYGLAIILSIYVM 67

Query: 100 SPT--LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
           +P     +      +  +    +    +     P+  F++   + ++ + F+D       
Sbjct: 68  APVGFATQGYLHQNEVSLTKSESVEKFLDEGMAPYRAFLKKQIKPREHAFFIDSTKQLWP 127

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
           +    + +     IL+P+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P 
Sbjct: 128 SEYADRLEPDSLLILLPAFTVSELSRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPM 187

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +ISLPFK++ FVL+DGW+ L   LV S+
Sbjct: 188 TISLPFKLLLFVLLDGWARLTHGLVTSY 215


>gi|320184486|gb|EFW59290.1| Flagellar biosynthesis protein FliP [Shigella flexneri CDC 796-83]
 gi|332096919|gb|EGJ01908.1| flagellar biosynthetic protein FliP [Shigella boydii 3594-74]
          Length = 222

 Score =  179 bits (453), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 81/216 (37%), Positives = 127/216 (58%), Gaps = 6/216 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIM 58
           M R    A  L+      A + L  + + P      +W   V+T    T L+  P +L+M
Sbjct: 1   MRRLLSVAPVLLWLVTPLAFAQLPGITSQPLPGGGQSWSLPVQTLVFITSLTFIPAILLM 60

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIVF +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +
Sbjct: 61  MTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEK 120

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I+   A+++ A+P   FM   TRE DL LF  +A++      +   + +  RIL P+++ 
Sbjct: 121 ISMQEALEKGAQPLREFMLRQTREADLGLFARLANTG----PLQGPEAVPMRILRPAYVT 176

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
           SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+
Sbjct: 177 SELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMV 212


>gi|22127344|ref|NP_670767.1| flagellar biosynthesis protein FliP [Yersinia pestis KIM 10]
 gi|45442780|ref|NP_994319.1| flagellar biosynthesis protein FliP [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51597653|ref|YP_071844.1| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis IP
           32953]
 gi|108809075|ref|YP_652991.1| flagellar biosynthesis protein FliP [Yersinia pestis Antiqua]
 gi|108810732|ref|YP_646499.1| flagellar biosynthesis protein FliP [Yersinia pestis Nepal516]
 gi|145597801|ref|YP_001161877.1| flagellar biosynthesis protein FliP [Yersinia pestis Pestoides F]
 gi|150260265|ref|ZP_01916993.1| lateral flagellar export and assembly protein [Yersinia pestis
           CA88-4125]
 gi|162418133|ref|YP_001604861.1| flagellar biosynthesis protein FliP [Yersinia pestis Angola]
 gi|165925078|ref|ZP_02220910.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165939035|ref|ZP_02227587.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008695|ref|ZP_02229593.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166211840|ref|ZP_02237875.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399704|ref|ZP_02305228.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167418889|ref|ZP_02310642.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425117|ref|ZP_02316870.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167466357|ref|ZP_02331061.1| flagellar biosynthetic protein FliP [Yersinia pestis FV-1]
 gi|170022955|ref|YP_001719460.1| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis
           YPIII]
 gi|218927896|ref|YP_002345771.1| flagellar biosynthesis protein FliP [Yersinia pestis CO92]
 gi|229837392|ref|ZP_04457555.1| Flagellar biosynthesis protein fliP [Yersinia pestis Pestoides A]
 gi|229840605|ref|ZP_04460764.1| Flagellar biosynthesis protein fliP [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842844|ref|ZP_04462996.1| Flagellar biosynthesis protein fliP [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229900929|ref|ZP_04516053.1| Flagellar biosynthesis protein fliP [Yersinia pestis Nepal516]
 gi|270487690|ref|ZP_06204764.1| flagellar biosynthetic protein FliP [Yersinia pestis KIM D27]
 gi|294502773|ref|YP_003566835.1| putative flagellar assembly protein [Yersinia pestis Z176003]
 gi|21960427|gb|AAM87018.1|AE013950_3 flagellar biosynthesis protein [Yersinia pestis KIM 10]
 gi|45437646|gb|AAS63196.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51590935|emb|CAH22591.1| Putative flagellar assembly/export protein, fliP [Yersinia
           pseudotuberculosis IP 32953]
 gi|108774380|gb|ABG16899.1| flagellar assembly protein [Yersinia pestis Nepal516]
 gi|108780988|gb|ABG15046.1| putative flagellar assembly protein [Yersinia pestis Antiqua]
 gi|115346507|emb|CAL19383.1| putative flagellar assembly protein [Yersinia pestis CO92]
 gi|145209497|gb|ABP38904.1| flagellar assembly protein [Yersinia pestis Pestoides F]
 gi|149289673|gb|EDM39750.1| lateral flagellar export and assembly protein [Yersinia pestis
           CA88-4125]
 gi|162350948|gb|ABX84896.1| flagellar biosynthetic protein FliP [Yersinia pestis Angola]
 gi|165912991|gb|EDR31616.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165923278|gb|EDR40429.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992034|gb|EDR44335.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166206586|gb|EDR51066.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166962883|gb|EDR58904.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167052208|gb|EDR63616.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055880|gb|EDR65661.1| flagellar biosynthetic protein FliP [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169749489|gb|ACA67007.1| flagellar biosynthetic protein FliP [Yersinia pseudotuberculosis
           YPIII]
 gi|229682268|gb|EEO78360.1| Flagellar biosynthesis protein fliP [Yersinia pestis Nepal516]
 gi|229690111|gb|EEO82168.1| Flagellar biosynthesis protein fliP [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696971|gb|EEO87018.1| Flagellar biosynthesis protein fliP [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229705515|gb|EEO91525.1| Flagellar biosynthesis protein fliP [Yersinia pestis Pestoides A]
 gi|262360805|gb|ACY57526.1| putative flagellar assembly protein [Yersinia pestis D106004]
 gi|262364750|gb|ACY61307.1| putative flagellar assembly protein [Yersinia pestis D182038]
 gi|270336194|gb|EFA46971.1| flagellar biosynthetic protein FliP [Yersinia pestis KIM D27]
 gi|294353232|gb|ADE63573.1| putative flagellar assembly protein [Yersinia pestis Z176003]
 gi|320016727|gb|ADW00299.1| Flagellar biosynthesis protein fliP [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 256

 Score =  179 bits (453), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 87/246 (35%), Positives = 140/246 (56%), Gaps = 8/246 (3%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRT--FGIFTILSIAPILLIM 58
           +I        L+   L+ A+     + N     +   + V+     + T+L + PI+++M
Sbjct: 13  IISRGLLVGGLLYSPLLLAQEGGITLFNTVQTATGQDYNVKIEILILMTLLGLLPIMMLM 72

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +TCF RFIIV +ILR  +G+   PPN V+  +AL +T  VM P   +  +  + P   ++
Sbjct: 73  MTCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKIHQDAVIPFQQDE 132

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           IT + A+ R   P   +M   T  K L   M +A  S       +    +  ++ P++++
Sbjct: 133 ITLSQALGRAEAPLKNYMLAQTSTKSLDQMMAIAQVSG------EPQQQDLSVVTPAYVL 186

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F++GF+I +PFL+ID+IVA+I+MAMGMMML P  +SLPFK++ FVL DGW+L+V
Sbjct: 187 SELKTAFQMGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLMV 246

Query: 239 ENLVKS 244
             L  S
Sbjct: 247 GTLTAS 252


>gi|83747860|ref|ZP_00944893.1| HrcR [Ralstonia solanacearum UW551]
 gi|83725507|gb|EAP72652.1| HrcR [Ralstonia solanacearum UW551]
          Length = 252

 Score =  179 bits (453), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 119/208 (57%), Gaps = 4/208 (1%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
              +   +++ P   ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ ++ ++M+P
Sbjct: 44  LIVMAVAIALLPFAAMVVTSYTKIVVVLGLLRNALGVQQVPPNMVLNGIAMIVSCFIMAP 103

Query: 102 TLDRSIEMGIQPLMNN---QITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
               +++     L       IT+   +     +PF  F+  +T  ++ + FM  A     
Sbjct: 104 VGMEAMQRAHVQLNAQGGANITQVMPLLDAARDPFREFLNKHTNAREKAFFMRSAQQLWP 163

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
                     +  +L P+F ++EL  +F IGFL+ L F++ID+++A ++MA+G+  + P+
Sbjct: 164 PAKAALLKEDDLIVLAPAFTLTELTSAFRIGFLLYLAFIVIDLVIANLLMALGLSQVTPS 223

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++++PFK++ FV++DGWS+LV  LV ++
Sbjct: 224 NVAIPFKLLLFVVMDGWSVLVHGLVNTY 251


>gi|186896787|ref|YP_001873899.1| flagellar biosynthesis protein FliP [Yersinia pseudotuberculosis
           PB1/+]
 gi|186699813|gb|ACC90442.1| flagellar biosynthetic protein FliP [Yersinia pseudotuberculosis
           PB1/+]
          Length = 256

 Score =  179 bits (453), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 87/246 (35%), Positives = 140/246 (56%), Gaps = 8/246 (3%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRT--FGIFTILSIAPILLIM 58
           +I        L+   L+ A+     + N     +   + V+     + T+L + PI+++M
Sbjct: 13  IISRGLLVGGLLYSPLLLAQEGGITLFNTVQTATGQDYNVKIEILILMTLLGLLPIMMLM 72

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +TCF RFIIV +ILR  +G+   PPN V+  +AL +T  VM P   +  +  + P   ++
Sbjct: 73  MTCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKIHQDAVIPFQQDE 132

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           IT + A+ R   P   +M   T  K L   M +A  S       +    +  ++ P++++
Sbjct: 133 ITLSQALGRAEAPLKNYMLAQTSTKSLDQMMAIAQVSG------EPQQQDLSVVTPAYVL 186

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F++GF+I +PFL+ID+IVA+I+MAMGMMML P  +SLPFK++ FVL DGW+L+V
Sbjct: 187 SELKTAFQMGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLMV 246

Query: 239 ENLVKS 244
             L  S
Sbjct: 247 GTLTAS 252


>gi|157373224|ref|YP_001471824.1| flagellar biosynthesis protein FliP [Shewanella sediminis HAW-EB3]
 gi|157315598|gb|ABV34696.1| Triacylglycerol lipase [Shewanella sediminis HAW-EB3]
          Length = 242

 Score =  179 bits (453), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 89/245 (36%), Positives = 132/245 (53%), Gaps = 4/245 (1%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           M+R       L+ P            ++           +    + T+LS  P LL+M+T
Sbjct: 1   MLRALLLLFCLLAPSAFANDGFTLFTLDDGQQSQSVNIKLEILALMTVLSFLPALLMMLT 60

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R I+V +ILR  +G+   PPN V++ +AL +T +VM P      +    P     I 
Sbjct: 61  SFTRIIVVLAILRQALGLQQSPPNKVLLGIALVLTLFVMRPVGQVMYDEAYLPYDQGLIE 120

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A+     P   FM   TRE DL   + +A            D I + +L+P+F++SE
Sbjct: 121 LPEAVNIGVVPLRKFMLAQTRETDLEQMLKIADEPV----TLTADEIPFFVLMPAFVLSE 176

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +F+IGFL+ LPFL+ID++VA+++M+MGMMML P  ISLPFK++ FVL+DGWS+ V  
Sbjct: 177 LKTAFQIGFLLFLPFLVIDLVVASVLMSMGMMMLSPLIISLPFKLMVFVLVDGWSMTVST 236

Query: 241 LVKSF 245
           LV SF
Sbjct: 237 LVASF 241


>gi|220903656|ref|YP_002478968.1| flagellar biosynthesis protein FliP [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219867955|gb|ACL48290.1| flagellar biosynthetic protein FliP [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 225

 Score =  179 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 90/227 (39%), Positives = 145/227 (63%), Gaps = 7/227 (3%)

Query: 20  KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79
           + +L      P  +SI   ++    + TILS+AP +++ VT F R IIVFS LR  MG+ 
Sbjct: 5   QLTLAGGAKSPEKVSI---LLEILFLLTILSVAPAIMLTVTSFTRIIIVFSFLRQAMGVQ 61

Query: 80  SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139
            +PP  ++ SLA+FMT  +M P   +  +  +QP +N +I    A+ +   P   FM  +
Sbjct: 62  QLPPTQILASLAIFMTVVIMFPVGRQINDDALQPYLNERIDYREALDKAQAPLRSFMFKH 121

Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
           TREKDLS+F  +++           + +   +L  +++ISEL+ +F IGFLI +PFL++D
Sbjct: 122 TREKDLSIFYSISNMEAPK----NKEEVPTMLLAAAYVISELKTAFTIGFLIYIPFLVLD 177

Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           M+++++++AMGMMMLPP  +S+PFK++ FV++DGW+LLV +LV SF+
Sbjct: 178 MVISSVLLAMGMMMLPPMMVSMPFKLLLFVMVDGWNLLVGSLVNSFL 224


>gi|146278775|ref|YP_001168934.1| flagellar biosynthesis protein FliP [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557016|gb|ABP71629.1| flagellar biosynthetic protein FliP [Rhodobacter sphaeroides ATCC
           17025]
          Length = 236

 Score =  178 bits (452), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 96/240 (40%), Positives = 145/240 (60%), Gaps = 5/240 (2%)

Query: 6   FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65
            F   LV        +     ++     S++T  V+   + T+LS+ P L +M+TCFP  
Sbjct: 1   MFMPLLVLAATAAPAAGQSLSVDFGDGSSLTTRSVQLIVLITLLSLVPALGMMITCFPFI 60

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
           + V SILR  +G+   PPN++I+SLALF+T+Y+M P    +   GI+PL  N+I    A+
Sbjct: 61  VTVLSILRQAIGLQQAPPNMLIVSLALFLTWYIMDPVFTEAWTRGIEPLTRNEIDIQQAL 120

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
              + PF  FM        L L       + R  +I+      + +L+PSF++SE++R+F
Sbjct: 121 VLASAPFRGFMAAR-----LDLETFSTLQALRPGEISPPLEAPFSVLVPSFLLSEIQRAF 175

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           EIGFLI LPFLIID++VA ++M+MGMMM+PP  +S+PFK+ FFV+ DGWSL+   LV+S+
Sbjct: 176 EIGFLIFLPFLIIDLVVAAVLMSMGMMMVPPAVVSMPFKLAFFVVGDGWSLISGALVRSY 235


>gi|294625840|ref|ZP_06704456.1| HrcR protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292599868|gb|EFF43989.1| HrcR protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 214

 Score =  178 bits (452), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 63/205 (30%), Positives = 116/205 (56%), Gaps = 1/205 (0%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
              +  +L + P   ++VT + + ++V  +LR  +G+  VPPN+V+  +AL ++ +VM+P
Sbjct: 9   LLLVVIMLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAP 68

Query: 102 TLDRSIEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD 160
               + +        +  +    +     EPF  F+  +TRE++ + FM  A        
Sbjct: 69  VGMEAFKAAQNYGTGSDNSRVVVLLDACREPFRQFLLKHTREREKAFFMRSAQQIWPKDK 128

Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
                  +  +L P+F +SEL  +F IGFL+ + F++ID++VA  +MAMG+  + PT+++
Sbjct: 129 AATLKSDDLLVLAPAFTLSELTEAFRIGFLLYMVFIVIDLVVANALMAMGLSQVTPTNVA 188

Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245
           +PFK++ FV +DGWS+L+  LV S+
Sbjct: 189 IPFKLLLFVAMDGWSMLMHGLVLSY 213


>gi|39545585|gb|AAR27892.1| AscR [Aeromonas hydrophila]
          Length = 217

 Score =  178 bits (452), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 69/208 (33%), Positives = 120/208 (57%), Gaps = 2/208 (0%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +       +L++ P + +M T F +  +VFS+LR  +G+  +PPN+ +  LA+ ++ YVM
Sbjct: 8   LNLIVGLALLALLPFIAVMATSFVKLAVVFSLLRNALGVQQIPPNMAMYGLAIILSIYVM 67

Query: 100 SPT--LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
           +P     +      +  +    +    +     P+  F++   + ++ + F+D       
Sbjct: 68  APVGFATQDYLRQNEVSLAKSESVEKFLDEGMAPYRTFLKKQIKPREHAFFIDSTKQLWP 127

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
           +    + +     IL+P+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P 
Sbjct: 128 SEYADRLESDSLLILLPAFTVSELSRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPM 187

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +ISLPFK++ FVL+DGW+ L   LV S+
Sbjct: 188 TISLPFKLLLFVLLDGWARLTHGLVISY 215


>gi|332162918|ref|YP_004299495.1| Lateral flagellar export/assembly protein [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|325667148|gb|ADZ43792.1| Lateral flagellar export/assembly protein [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330862337|emb|CBX72497.1| flagellar biosynthetic protein fliP [Yersinia enterocolitica
           W22703]
          Length = 256

 Score =  178 bits (452), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 89/246 (36%), Positives = 141/246 (57%), Gaps = 8/246 (3%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRT--FGIFTILSIAPILLIM 58
           +I        L+   L+ A+     + +     +   + V+     + T+L + PI+++M
Sbjct: 13  IISSGLVISGLLYSPLLLAQEGGITLFSTAQTAAGQDYNVKIEILILMTLLGLLPIMMLM 72

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +TCF RFIIV +ILR  +G+   PPN V+  +AL +T  VM P   +  +  + P  N++
Sbjct: 73  MTCFTRFIIVLAILRQALGLQQSPPNKVLTGIALALTLLVMRPVWTKVHQDAVIPFQNDE 132

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           IT   A+ R   P   +M   T  K L   MD+A  S       +    +  ++ P++++
Sbjct: 133 ITLPQALARAEVPLKNYMLAQTSTKSLDQMMDIAQVSG------EPQQQDLTVVTPAYLL 186

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F+IGF+I +PFL+ID+IVA+I+MAMGMMML P  +SLPFK++ FVL DGW+L+V
Sbjct: 187 SELKTAFQIGFMIYIPFLVIDLIVASILMAMGMMMLSPLIVSLPFKLMLFVLCDGWTLIV 246

Query: 239 ENLVKS 244
             L  S
Sbjct: 247 GTLTAS 252


>gi|307824489|ref|ZP_07654714.1| flagellar biosynthetic protein FliP [Methylobacter tundripaludum
           SV96]
 gi|307734473|gb|EFO05325.1| flagellar biosynthetic protein FliP [Methylobacter tundripaludum
           SV96]
          Length = 252

 Score =  178 bits (452), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 96/245 (39%), Positives = 151/245 (61%), Gaps = 4/245 (1%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           ++      L + TP    A      V          T  ++   + T+L++ P LL+ +T
Sbjct: 9   LLIIGMAFLLIETPAYAAAGIEAVTVTTGKQGAQTYTVTIQILALMTLLTVLPALLLTMT 68

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R +IV S+LRT +G GS P N V++ L++F+T ++M P  D+     +QP +  +I 
Sbjct: 69  SFTRIMIVLSLLRTALGTGSAPSNQVLLGLSMFLTIFIMMPVFDKVNAEAVQPYLEEKID 128

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
            T AI++ +EPF  FM   TRE DL LF+ ++       ++   +++ + +L+P+F+ SE
Sbjct: 129 VTVAIEKASEPFRQFMLKQTREADLELFIRISG----KAELESAENVPFSLLLPAFVTSE 184

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +F+IGFLI LPFL+ID++VA+++M+MGMMML P  ISLPFK++ FVL DGWSL++E 
Sbjct: 185 LKTAFQIGFLIFLPFLVIDLVVASVLMSMGMMMLSPMIISLPFKIMLFVLADGWSLIMEM 244

Query: 241 LVKSF 245
           L  SF
Sbjct: 245 LAASF 249


>gi|187918149|ref|YP_001883712.1| flagellar biosynthesis protein FliP [Borrelia hermsii DAH]
 gi|119860997|gb|AAX16792.1| flagellar biosynthetic protein FliP [Borrelia hermsii DAH]
          Length = 254

 Score =  178 bits (452), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 89/258 (34%), Positives = 145/258 (56%), Gaps = 16/258 (6%)

Query: 1   MIRYCFFALFLVTPELVFAKS---SLHDVMNIP------ADLSISTWIVRTFGIFTILSI 51
           M +     LFL    L FA++        +N P      +      + ++   I T++++
Sbjct: 1   MGKKLSLFLFLGVINLAFAQTKSLQPTTGLNFPFVDLVNSVGGGIVFPLQLLLILTVITL 60

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           +P  L+++T F R  IV   +R  + +   PPN VI+ LALF+T + M PT +   +   
Sbjct: 61  SPAFLVLMTSFLRIAIVLDFIRRALSLQQSPPNQVIMGLALFLTLFTMWPTFNIIYKDAY 120

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRN---NTREKDLSLFMDMAHSSHRNTDITKNDHIE 168
            PL +++I+      R   P   FM     N++ +++ LFM +++ S           + 
Sbjct: 121 LPLKDSKISFNEFYDRGIAPLRNFMYKQMSNSKHEEIKLFMSISNYSRPK----NFSEVP 176

Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
             +LI SF++ EL+ +F++G LI LPF++ID+IVA ++MAMGM+MLPP  ISLPFK+I F
Sbjct: 177 THVLIASFVLHELKVAFKMGILIFLPFIVIDIIVAAVLMAMGMIMLPPVMISLPFKLILF 236

Query: 229 VLIDGWSLLVENLVKSFI 246
           V++DGW+L+   LVKSF+
Sbjct: 237 VMVDGWTLITSGLVKSFM 254


>gi|255022051|ref|ZP_05294057.1| Flagellar biosynthesis pathway, component FliP [Acidithiobacillus
           caldus ATCC 51756]
 gi|254968537|gb|EET26093.1| Flagellar biosynthesis pathway, component FliP [Acidithiobacillus
           caldus ATCC 51756]
          Length = 231

 Score =  178 bits (451), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 88/206 (42%), Positives = 134/206 (65%), Gaps = 3/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+T  + T+L+  P +++M+T F R IIV S+LR G+G+ ++PPN+V+I LALF+TF+VM
Sbjct: 25  VQTVILMTVLTFLPAIVLMMTGFTRIIIVLSLLRQGLGLSTMPPNIVLIGLALFLTFFVM 84

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            PT        + PL   +++ T A+    +P  +FMRNNT +  ++ F+ M        
Sbjct: 85  QPTWSSINHQALIPLEQGKVSVTRALAIAEKPLRIFMRNNTTKDSVAQFLRM---DGIKK 141

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
            +     I  R+LIP+F +S+L   FE+GFL+ LPFLIID++VA ++MAMGMMM+ P +I
Sbjct: 142 TLRSEKDIPMRVLIPAFAVSQLESGFELGFLVYLPFLIIDLLVAAVLMAMGMMMVSPQTI 201

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           S+P K++ F L  GW L+   LV+SF
Sbjct: 202 SIPIKLLLFALGGGWLLVTGTLVRSF 227


>gi|46398252|gb|AAS91806.1| AcrR [Aeromonas hydrophila]
          Length = 217

 Score =  178 bits (451), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 69/208 (33%), Positives = 120/208 (57%), Gaps = 2/208 (0%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +       +L++ P + +M T F +  +VFS+LR  +G+  +PPN+ +  LA+ ++ YVM
Sbjct: 8   LNLIVGLALLALLPFIAVMATSFVKMAVVFSLLRNALGVQQIPPNMAMYGLAIILSIYVM 67

Query: 100 SPT--LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
           +P     +      +  +    +    +     P+  F++   + ++ + F+D       
Sbjct: 68  APVGFATQDYLRQNEVSLAKSESVEKFLDEGIAPYRAFLKKQIKPREHAFFIDSTKQLWP 127

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
           +    + +     IL+P+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P 
Sbjct: 128 SKYADRLEPDSLLILLPAFTVSELSRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPM 187

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +ISLPFK++ FVL+DGW+ L   LV S+
Sbjct: 188 TISLPFKLLLFVLLDGWARLTHGLVISY 215


>gi|12802687|gb|AAK08058.1|AF320050_2 HrcR [Xanthomonas oryzae pv. oryzae]
 gi|9711593|dbj|BAB07862.1| HrcR [Xanthomonas oryzae pv. oryzae]
 gi|24251298|gb|AAN46417.1| HrcR [Xanthomonas oryzae pv. oryzae]
          Length = 200

 Score =  177 bits (450), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 66/200 (33%), Positives = 114/200 (57%), Gaps = 3/200 (1%)

Query: 48  ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107
           +L + P   ++VT + + ++V  +LR  +G+  VPPN+V+  +AL ++ +VM+P    + 
Sbjct: 1   MLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAPVGMEAF 60

Query: 108 EMGIQPLMNNQITETTA--IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165
           +   Q              +    EPF  F+  +T E++ + FM  A         T   
Sbjct: 61  KAA-QNYGAGSDNSRIVVLLDACREPFRQFLLKHTPEREKAFFMRSAQQIWPKDKATTLK 119

Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225
             +  IL P+F +SEL  +F IGFL+ L F++ID++VA  +MAMG+  + PT++++PFK+
Sbjct: 120 SDDLLILAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVAIPFKL 179

Query: 226 IFFVLIDGWSLLVENLVKSF 245
           + FV +DGWS+L+  LV S+
Sbjct: 180 LLFVAMDGWSMLIHGLVLSY 199


>gi|254499102|ref|ZP_05111792.1| flagellar biosynthesis protein FliP [Legionella drancourtii LLAP12]
 gi|254351641|gb|EET10486.1| flagellar biosynthesis protein FliP [Legionella drancourtii LLAP12]
          Length = 241

 Score =  177 bits (450), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 91/242 (37%), Positives = 149/242 (61%), Gaps = 7/242 (2%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
           +    + L  P    A +++  +     ++S +   ++ F + T+LS+AP +LIM++ F 
Sbjct: 6   FIVTFILLSAPLACLAGTNIGPIHLEQDNISPA---LQAFAVLTVLSLAPSILIMLSSFT 62

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
           R ++V S+LR  +G+   PPN VIISL+LF+T + M P           P   +Q+   T
Sbjct: 63  RIVVVLSMLRNALGLQQTPPNTVIISLSLFLTLFTMMPVAKTIYNEAYLPYEAHQMNTET 122

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
           ++    +P   FM   TREKD+++ + +A         +  + I++  LIP+F++SEL+ 
Sbjct: 123 SLNNAIKPLKKFMLQQTREKDMNVILQLAKEPMP----SSAEKIKFYQLIPAFLLSELQT 178

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
           +F+IGF+I LPFL++D+IV+ I+M +GMMM+PP SISLP K++ F+LIDGW L+V+ LV 
Sbjct: 179 AFQIGFMIFLPFLLVDLIVSGILMTVGMMMMPPMSISLPVKILLFILIDGWDLVVQALVG 238

Query: 244 SF 245
           SF
Sbjct: 239 SF 240


>gi|226320576|ref|ZP_03796136.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 29805]
 gi|226233995|gb|EEH32716.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 29805]
          Length = 254

 Score =  177 bits (450), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 83/258 (32%), Positives = 139/258 (53%), Gaps = 16/258 (6%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNI---------PADLSISTWIVRTFGIFTILSI 51
           M +   F LF     L FA++      N              S   + ++   + TI+++
Sbjct: 1   MRKCFIFFLFFSVTSLSFAQTKSLQTTNGLNFPFLNFDSIGGSEIAFSLQLLILLTIITL 60

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           +P  L+++T F R  IV   +R  + +   PP  +++ LALF+T + M PT +   E   
Sbjct: 61  SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNSIYEQAY 120

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNT---REKDLSLFMDMAHSSHRNTDITKNDHIE 168
            PL  ++I       +   P  +FM       R +++ LFM M++             + 
Sbjct: 121 LPLKESKINFNEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSMSNYDRPK----NFSEVP 176

Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
             +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP  ISLPFK+I F
Sbjct: 177 THVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLILF 236

Query: 229 VLIDGWSLLVENLVKSFI 246
           V++DGW+L+   L+KSF+
Sbjct: 237 VMVDGWTLITSGLIKSFM 254


>gi|159024057|gb|ABW87285.1| HrcR [Xanthomonas fuscans subsp. fuscans]
          Length = 214

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 64/205 (31%), Positives = 115/205 (56%), Gaps = 1/205 (0%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
              +  +L + P   ++VT + + ++V  +LR  +G+  VPPN+V+  +AL ++ +VM+P
Sbjct: 9   LLLVVIMLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAP 68

Query: 102 TLDRSIEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD 160
               + +        +  +    +     EPF  F+  +TRE++   FM  A        
Sbjct: 69  VGMEAFKAAQNYGTGSDNSRVVVLLDACREPFRQFLLKHTREREKVFFMRSAQQIWPKDK 128

Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
                  +  +L P+F +SEL  +F IGFL+ L F++ID++VA  +MAMG+  + PT+++
Sbjct: 129 AATLKSDDLLVLAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVA 188

Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245
           +PFK++ FV +DGWS+L+  LV S+
Sbjct: 189 IPFKLLLFVAMDGWSMLMHGLVLSY 213


>gi|260574384|ref|ZP_05842388.1| flagellar biosynthetic protein FliP [Rhodobacter sp. SW2]
 gi|259023280|gb|EEW26572.1| flagellar biosynthetic protein FliP [Rhodobacter sp. SW2]
          Length = 242

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 95/238 (39%), Positives = 146/238 (61%), Gaps = 5/238 (2%)

Query: 8   ALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67
           AL ++   L     +    +N+    S+S   ++   + T+LS+ P L +M+TCFP  + 
Sbjct: 9   ALAVLLIGLAGPVLAQELTLNLGDQGSLSARSIQLLVLITVLSLVPGLAVMITCFPFIVT 68

Query: 68  VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
           V SILR  +G+   PPN++I+SLALF+T+YVM P    +   G++PL   +    TAI  
Sbjct: 69  VLSILRQAIGLQQSPPNMLIVSLALFLTWYVMDPVFTEAWTTGMEPLTRGETDLQTAIPA 128

Query: 128 VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187
           +  PF VFM         +     A  + R  + +        +++PSF++SE++R+FEI
Sbjct: 129 ILAPFRVFMSARMDADTFA-----AMQALRPGESSSVAQAPLSLMVPSFLLSEIQRAFEI 183

Query: 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GFLI LPFLIID++VA ++M+MGMMM+PP+ +SLPFK+ FFV+ DGWSL+   LV+S+
Sbjct: 184 GFLIFLPFLIIDLVVAAVLMSMGMMMVPPSIVSLPFKLAFFVVADGWSLVSGALVRSY 241


>gi|78358622|ref|YP_390071.1| flagellar biosynthesis protein FliP [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78221027|gb|ABB40376.1| flagellar biosynthetic protein FliP [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 237

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 93/227 (40%), Positives = 140/227 (61%), Gaps = 7/227 (3%)

Query: 20  KSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMG 79
           + +L      P  +S+   I+    + T+LS+AP +++ VT F R IIVF  +R  MG+ 
Sbjct: 17  QLTLSGGATEPEKVSV---ILEILFLLTVLSLAPAIMLTVTSFTRIIIVFHFVRQAMGLP 73

Query: 80  SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN 139
           ++PPN V+ SLA+FMT  +M P      +  +QP ++ +I    A+    EP   FM  +
Sbjct: 74  TLPPNQVLASLAIFMTVVIMMPVGKEINDRALQPYLDERIGFREALTVAQEPLREFMFKH 133

Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
           TREKDLS+F  +             D +   +L   ++ISEL+  F IGFLI +PFL++D
Sbjct: 134 TREKDLSVFYGITGMERPR----NKDDVPTVMLAAGYVISELKTGFTIGFLIYIPFLVLD 189

Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           M+VA+I++AMGMMMLPP  +S+PFK++ FV++DGWSLL  +LV SF+
Sbjct: 190 MVVASILLAMGMMMLPPMMVSMPFKILLFVMVDGWSLLTTSLVNSFM 236


>gi|94987081|ref|YP_595014.1| flagellar biosynthesis protein FliP [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731330|emb|CAJ54693.1| Flagellar biosynthesis pathway, component FliP [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 262

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 90/242 (37%), Positives = 146/242 (60%), Gaps = 4/242 (1%)

Query: 5   CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
            FF L +   E +   +    +     +    + ++    + T+LS+AP +++ VT F R
Sbjct: 24  LFFPLSIQAAEDIAIPNLQLTLSGGQTEPEKVSLLLEILFMLTVLSLAPAIMLTVTSFTR 83

Query: 65  FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
            IIVF  LR  MG+  +PP  ++ SLA+FMT  +M P   +  +  +QP ++ ++  + A
Sbjct: 84  IIIVFHFLRQAMGIQQIPPTQILASLAIFMTVIIMFPVGKQINDTALQPYLDERLGFSEA 143

Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
           + R   P   F+  +TREKDLS+F  +A            D +   +L  +++ISEL+  
Sbjct: 144 LTRAQAPLRTFLFKHTREKDLSIFYSIARMEQPK----NKDDVPTILLSAAYVISELKTG 199

Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           F IGFLI +PFLI+DM+V+++++AMGMMMLPP  +S+PFK++ FV+IDGW+LL+ +LV S
Sbjct: 200 FIIGFLIYIPFLIVDMVVSSVLLAMGMMMLPPMMVSMPFKLLLFVMIDGWNLLIGSLVNS 259

Query: 245 FI 246
           F+
Sbjct: 260 FL 261


>gi|15594620|ref|NP_212409.1| flagellar biosynthesis protein FliP [Borrelia burgdorferi B31]
 gi|218249847|ref|YP_002374798.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi ZS7]
 gi|226321593|ref|ZP_03797119.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi Bol26]
 gi|2494561|sp|Q44763|FLIP_BORBU RecName: Full=Flagellar biosynthetic protein fliP
 gi|1165260|gb|AAA85599.1| FliP [Borrelia burgdorferi]
 gi|2688191|gb|AAC66673.1| flagellar biosynthesis protein (fliP) [Borrelia burgdorferi B31]
 gi|218165035|gb|ACK75096.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi ZS7]
 gi|226232782|gb|EEH31535.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi Bol26]
 gi|312149165|gb|ADQ29236.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi N40]
          Length = 254

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 83/258 (32%), Positives = 139/258 (53%), Gaps = 16/258 (6%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNI---------PADLSISTWIVRTFGIFTILSI 51
           M +   F LF     L FA++      N              S   + ++   + TI+++
Sbjct: 1   MRKCFNFFLFFSVTSLSFAQTKSLQTTNGLNFPFLNFDSIGGSEIAFSLQLLILLTIITL 60

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           +P  L+++T F R  IV   +R  + +   PP  +++ LALF+T + M PT +   E   
Sbjct: 61  SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNSIYEQAY 120

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNT---REKDLSLFMDMAHSSHRNTDITKNDHIE 168
            PL  ++I       +   P  +FM       R +++ LFM M++             + 
Sbjct: 121 LPLKESKINFNEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSMSNYDRPK----NFSEVP 176

Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
             +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP  ISLPFK+I F
Sbjct: 177 THVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLILF 236

Query: 229 VLIDGWSLLVENLVKSFI 246
           V++DGW+L+   L+KSF+
Sbjct: 237 VMVDGWTLITSGLIKSFM 254


>gi|327478782|gb|AEA82092.1| flagellar biosynthesis protein FliP [Pseudomonas stutzeri DSM 4166]
          Length = 251

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 83/234 (35%), Positives = 131/234 (55%), Gaps = 4/234 (1%)

Query: 11  LVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFS 70
           +               +N   +    +  ++   I T+L   P +L+M+TCF RFIIV +
Sbjct: 18  MPLAAQAAGGEITLFNLNDTENGQEFSVKLQILIIMTLLGFLPAMLMMMTCFTRFIIVLA 77

Query: 71  ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
           ILR  +G+   PPN V+I +AL +T  VM P          +P  N++IT   A+     
Sbjct: 78  ILRQAIGLQQSPPNQVLIGIALIVTLLVMRPVWQEIHSQAYEPFHNDEITLEQALDSAKG 137

Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
               FM   T +  L   + +A            D +++ +L+P+F++SEL+ +F++GF+
Sbjct: 138 SLAGFMLAQTNKNSLETMVALAGEQLPE----DLDELDFSLLLPAFVLSELKTAFQLGFM 193

Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           I +PFL+ID++VA+++MAMGMMML P  ISLPFK++ FVL+DGW+LL+  L  S
Sbjct: 194 IFVPFLVIDLVVASVLMAMGMMMLSPMMISLPFKLMVFVLVDGWALLMGTLTTS 247


>gi|83646012|ref|YP_434447.1| type III secretion system protein [Hahella chejuensis KCTC 2396]
 gi|83634055|gb|ABC30022.1| Type III secretory pathway, component EscR [Hahella chejuensis KCTC
           2396]
          Length = 215

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 70/202 (34%), Positives = 119/202 (58%), Gaps = 2/202 (0%)

Query: 46  FTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDR 105
              +++ P   +M T F +  +V  +LR  +G+  +PPN+ +  LA+ +T Y+M+P    
Sbjct: 13  LAGIALIPFFAVMATSFVKIAVVLGLLRNALGIQQIPPNMALYGLAIILTAYIMAPVGIS 72

Query: 106 SI-EMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163
           +  E+  +P+      E  A+    ++P+  F++ +  E + + F + A           
Sbjct: 73  AYNELSTKPISLENTQELKALMDTASQPYKEFLQRHGSEDEQTFFHETAAEIWPEDVAKG 132

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
            +   + +LIP+F  SEL  +FEIGFLI LPFL ID+I++ I++AMGMMM+ P +ISLPF
Sbjct: 133 LEKDSFFVLIPAFTASELTSAFEIGFLIYLPFLAIDLIISNILLAMGMMMVSPMTISLPF 192

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K++ FVL+DGW+ L+  LV ++
Sbjct: 193 KLLLFVLMDGWTRLIHGLVLAY 214


>gi|114566400|ref|YP_753554.1| flagellar biosynthesis protein FliP [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114337335|gb|ABI68183.1| flagellar biosynthetic protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 240

 Score =  177 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 99/243 (40%), Positives = 152/243 (62%), Gaps = 9/243 (3%)

Query: 8   ALFLVTPELVFAKSSLHDVMNIPADLSIS-----TWIVRTFGIFTILSIAPILLIMVTCF 62
            L LV P  V A+      +N+            +  ++   + T+L++AP +LIM+T F
Sbjct: 1   MLLLVFPGTVAAEPLQLPNLNLQIGGGAGEPQDLSVALQLIILITVLTLAPAILIMLTSF 60

Query: 63  PRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET 122
            R ++V + +RT +    +PPN ++I +ALF+TF+VM+PT        +QP    +IT+ 
Sbjct: 61  TRIMVVLAFIRTSLATQQMPPNQLLIGMALFLTFFVMAPTFQEVNSQALQPYFKGKITQE 120

Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182
            A ++   P   FM   TREKDL+LF+ M+     +        I   +LIPSF+ISEL+
Sbjct: 121 QAFEKGMNPLRSFMFKQTREKDLALFVKMSKMERPH----NFKDIPNYVLIPSFVISELK 176

Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
            +F+IGF+I +PFLIIDM+VA+ +M+MGMMMLPP  ISLPFK++ FVL+DGW+L++++L+
Sbjct: 177 TAFQIGFIIFIPFLIIDMVVASALMSMGMMMLPPMMISLPFKILLFVLVDGWNLVIQSLI 236

Query: 243 KSF 245
            SF
Sbjct: 237 LSF 239


>gi|116328498|ref|YP_798218.1| flagellar biosynthesis protein FliP [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116331228|ref|YP_800946.1| flagellar biosynthesis protein FliP [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116121242|gb|ABJ79285.1| Endoflagellar biosynthesis pathway protein [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116124917|gb|ABJ76188.1| Endoflagellar biosynthesis pathway protein [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 260

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 80/226 (35%), Positives = 144/226 (63%), Gaps = 7/226 (3%)

Query: 23  LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82
           L+  +N       ++  +    + TILS+AP +++ +T F + +IV   +R  + + ++P
Sbjct: 38  LNINVNEANSPRETSLSLMVLFLVTILSLAPAIVMSLTSFTKIVIVLDFVRRALSIQNLP 97

Query: 83  PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNN--- 139
           PN V++ LALFMTF++M+PTL+   E  + P +  +I   +  ++   P   FM      
Sbjct: 98  PNQVMMGLALFMTFFIMAPTLNTVNERALAPYLEGKIDTNSFFEKGMVPIREFMMRQIGT 157

Query: 140 TREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
           +  KD++LF+ +     +  ++   D +   +LIP+FM+SE++++F IG +I +PF++ID
Sbjct: 158 SGAKDVALFLKI----GKVEEVESFDDVPSYVLIPAFMLSEIKKAFWIGIIIFIPFIVID 213

Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++VA+ +++MG+MMLPP  +SLPFK+I FVL+DGW+L+V  LV+S+
Sbjct: 214 LVVASALLSMGLMMLPPVMVSLPFKLILFVLVDGWNLIVYELVRSY 259


>gi|216264896|ref|ZP_03436888.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 156a]
 gi|221217753|ref|ZP_03589221.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 72a]
 gi|223888889|ref|ZP_03623480.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 64b]
 gi|224533771|ref|ZP_03674359.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi CA-11.2a]
 gi|225549012|ref|ZP_03769987.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 94a]
 gi|225550173|ref|ZP_03771133.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 118a]
 gi|215981369|gb|EEC22176.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 156a]
 gi|221192430|gb|EEE18649.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 72a]
 gi|223885705|gb|EEF56804.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 64b]
 gi|224513064|gb|EEF83427.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi CA-11.2a]
 gi|225369285|gb|EEG98738.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 118a]
 gi|225370238|gb|EEG99676.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi 94a]
 gi|312148186|gb|ADQ30845.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi JD1]
          Length = 254

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 83/258 (32%), Positives = 139/258 (53%), Gaps = 16/258 (6%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNI---------PADLSISTWIVRTFGIFTILSI 51
           M +   F LF     L FA++      N              S   + ++   + TI+++
Sbjct: 1   MRKCFNFFLFFSVTSLSFAQTKSLQTTNGLNFPFLNFDSIGGSEIAFSLQLLILLTIITL 60

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           +P  L+++T F R  IV   +R  + +   PP  +++ LALF+T + M PT +   E   
Sbjct: 61  SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNSIYEQAY 120

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNT---REKDLSLFMDMAHSSHRNTDITKNDHIE 168
            PL  ++I       +   P  +FM       R +++ LFM M++             + 
Sbjct: 121 LPLKESKINFNEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSMSNYDRPR----NFSEVP 176

Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
             +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP  ISLPFK+I F
Sbjct: 177 THVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLILF 236

Query: 229 VLIDGWSLLVENLVKSFI 246
           V++DGW+L+   L+KSF+
Sbjct: 237 VMVDGWTLITSGLIKSFM 254


>gi|253988529|ref|YP_003039885.1| type III secretion system protein [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211637889|emb|CAR66518.1| type iii secretion component protein sctr [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253779979|emb|CAQ83140.1| type iii secretion component protein sctr [Photorhabdus
           asymbiotica]
          Length = 217

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 71/208 (34%), Positives = 122/208 (58%), Gaps = 2/208 (0%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +       +LS+ P + +M T F +  +VFS+LR  +G+  +PPN+ +  LA+ +T YVM
Sbjct: 8   LDLIIGLALLSLLPFIAVMATSFLKLAVVFSLLRNALGVQQIPPNMAMYGLAIILTIYVM 67

Query: 100 SPT--LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
           +P     +      +   +N  +    ++    P+  F++ + +  + + F+D       
Sbjct: 68  APVGFATQDYLRQNEVSFSNAQSVEKFLEEGMAPYRNFLKQHIKSSERTFFIDSTRQIWP 127

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
           +    + +     IL+P+F +SEL R+FEIGFL+ LPF+ ID+I++ I++AMGMMM+ P 
Sbjct: 128 SQYANRLEPDSLLILLPAFTVSELTRAFEIGFLLYLPFIAIDLIISNILLAMGMMMVSPM 187

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +ISLPFK++ FVL+DGW+ L   LV S+
Sbjct: 188 TISLPFKLLLFVLLDGWTRLTHGLVISY 215


>gi|107101125|ref|ZP_01365043.1| hypothetical protein PaerPA_01002157 [Pseudomonas aeruginosa PACS2]
          Length = 217

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 72/196 (36%), Positives = 117/196 (59%), Gaps = 2/196 (1%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT--LDRSIEM 109
            P + +M T F +  +VFS+LR  +G+  +PPN+ +  LA+ ++ YVM+P     R    
Sbjct: 20  VPFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLR 79

Query: 110 GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169
                +N+  +    +     P+  F++   +E++ + FM+       +    + D    
Sbjct: 80  NHDVSLNDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSL 139

Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
            IL+P+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P +ISLPFK++ FV
Sbjct: 140 LILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISLPFKLLLFV 199

Query: 230 LIDGWSLLVENLVKSF 245
           L+DGW+ L   LV S+
Sbjct: 200 LLDGWARLTHGLVISY 215


>gi|195941371|ref|ZP_03086753.1| flagellar biosynthesis protein FliP [Borrelia burgdorferi 80a]
 gi|224533102|ref|ZP_03673702.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi WI91-23]
 gi|224511829|gb|EEF82230.1| flagellar biosynthetic protein FliP [Borrelia burgdorferi WI91-23]
          Length = 254

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 83/258 (32%), Positives = 139/258 (53%), Gaps = 16/258 (6%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNI---------PADLSISTWIVRTFGIFTILSI 51
           M +   F LF     L FA++      N              S   + ++   + TI+++
Sbjct: 1   MRKCFNFFLFFSVTSLSFAQTKSLQTTNGLNFPFLNFDSIGGSEIAFSLQLLILLTIITL 60

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           +P  L+++T F R  IV   +R  + +   PP  +++ LALF+T + M PT +   E   
Sbjct: 61  SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNSIYEQAY 120

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNT---REKDLSLFMDMAHSSHRNTDITKNDHIE 168
            PL  ++I       +   P  +FM       R +++ LFM M++             + 
Sbjct: 121 LPLKESKINFNEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSMSNYDRPK----NFSEVP 176

Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
             +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP  ISLPFK+I F
Sbjct: 177 THVLIVAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLILF 236

Query: 229 VLIDGWSLLVENLVKSFI 246
           V++DGW+L+   L+KSF+
Sbjct: 237 VMVDGWTLITSGLIKSFM 254


>gi|216264092|ref|ZP_03436086.1| flagellar biosynthetic protein FliP [Borrelia afzelii ACA-1]
 gi|215980136|gb|EEC20958.1| flagellar biosynthetic protein FliP [Borrelia afzelii ACA-1]
          Length = 254

 Score =  177 bits (448), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 80/258 (31%), Positives = 138/258 (53%), Gaps = 16/258 (6%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPA---------DLSISTWIVRTFGIFTILSI 51
           M +   F LF     + FA++      N              S   + ++   + TI+++
Sbjct: 1   MRKCFNFFLFFGVTSVSFAQTKSLQATNGLNFPFLNFENIGGSEIAFSLQLLILLTIITL 60

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           +P  L+++T F R  IV   +R  + +   PP  +++ LALF+T + M PT +   +   
Sbjct: 61  SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNVIYKQAY 120

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNT---REKDLSLFMDMAHSSHRNTDITKNDHIE 168
            PL  ++I       +   P  +FM       R +++ LFM ++              + 
Sbjct: 121 LPLKESKINFDEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSISSYDRPK----NFSEVP 176

Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
             +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP  ISLPFK+I F
Sbjct: 177 THVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLILF 236

Query: 229 VLIDGWSLLVENLVKSFI 246
           V++DGW+L+   L+KSF+
Sbjct: 237 VMVDGWTLITSGLIKSFM 254


>gi|319787090|ref|YP_004146565.1| flagellar biosynthetic protein FliP [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465602|gb|ADV27334.1| flagellar biosynthetic protein FliP [Pseudoxanthomonas suwonensis
           11-1]
          Length = 257

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 85/222 (38%), Positives = 130/222 (58%), Gaps = 4/222 (1%)

Query: 24  HDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPP 83
            DV       +  +  ++T  + T +++ P LL+++TCF R IIV ++LR  MG G  P 
Sbjct: 37  PDVTVGQIGDNPISVPLQTLLLMTGITLLPSLLLVMTCFTRIIIVMALLRQAMGTGQTPS 96

Query: 84  NLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREK 143
           N +++ L+LF+T  +M P   ++ + G  P +N +I   +A      P   FM    RE 
Sbjct: 97  NQILVGLSLFLTAMIMMPVWQKAWDAGFAPYLNGEIDFRSAWDLGTAPLRAFMLAQVRET 156

Query: 144 DLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVA 203
           DL  F  +A     +      + + + +L  SF+ SEL+ +FEIGFLI +PF+IID++VA
Sbjct: 157 DLMTFAGLAG----HDTYASPEAVPFPVLAASFVTSELKTAFEIGFLIFIPFVIIDLVVA 212

Query: 204 TIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +++M+MGMMML P  IS PFK++ FVL+DGW L V  L  SF
Sbjct: 213 SVLMSMGMMMLSPMLISAPFKILLFVLVDGWVLTVGTLAASF 254


>gi|330809248|ref|YP_004353710.1| flagellar biosynthetic protein fliP [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327377356|gb|AEA68706.1| Putative flagellar biosynthetic protein fliP [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 240

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 82/204 (40%), Positives = 133/204 (65%), Gaps = 4/204 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V    + T LS  P L+I +T F R I+V S+ R  +G+   PPN+V+I L++F+T + M
Sbjct: 38  VSIVALLTALSFLPFLVISLTTFTRNIVVLSLARQALGLQQTPPNIVLIVLSMFLTLFAM 97

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +PTL+++ + GI+P + N++    A  +   P   FM   T E+DL L  ++A       
Sbjct: 98  APTLEKAYDAGIKPFLANKVGLDGAALQGWVPIRDFMIRQTHEEDLRLIYELAKDPLPQA 157

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                + +    L+P+FM+SEL+ +F+IGF+I LPFLIID++VA+I+M++GM+M+PP +I
Sbjct: 158 ----PEGLSPVKLVPAFMLSELKLAFQIGFMIFLPFLIIDLVVASILMSLGMIMVPPITI 213

Query: 220 SLPFKVIFFVLIDGWSLLVENLVK 243
           SLP K++ F+LIDGW L+ + L++
Sbjct: 214 SLPLKIMLFLLIDGWGLIAQTLMR 237


>gi|160902840|ref|YP_001568421.1| flagellar biosynthesis protein FliP [Petrotoga mobilis SJ95]
 gi|160360484|gb|ABX32098.1| flagellar biosynthetic protein FliP [Petrotoga mobilis SJ95]
          Length = 249

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 90/249 (36%), Positives = 149/249 (59%), Gaps = 14/249 (5%)

Query: 7   FALFLVTPELVFAKSSLHD-----VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
             LF++   LVF+++++        +N   +++  T  +    I T+LS+AP  L++ T 
Sbjct: 4   LILFILAFSLVFSQNTVQLPGVDIQINPNEEVNTLTPTLTILLIVTVLSLAPGFLMLFTS 63

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F R ++V S LR  MG    PPN V+++LALF+T  +M P  +   +  I P   N+I+ 
Sbjct: 64  FTRIVVVLSFLRQAMGTRQAPPNQVMLALALFLTIMIMFPVFNGVYQEAIIPYNQNEISY 123

Query: 122 TTAIQRVAEPFWVFMRN----NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
             AIQ     F  FM +    +  E D+ +      SS  N +I   +   ++IL+P+F 
Sbjct: 124 EEAIQISWLQFKDFMISEIVAHKNEDDIYML-----SSSMNVEIDNIEETPFQILVPAFA 178

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
           ISEL  +F++  L+ LPF+I+DM+VA+I+++MGM+M+PP  ISLPFK++ FV+++GW L+
Sbjct: 179 ISELEIAFKMSILLYLPFIIVDMVVASILLSMGMIMIPPILISLPFKIMIFVMVNGWDLI 238

Query: 238 VENLVKSFI 246
           +  LV+SF+
Sbjct: 239 IGGLVRSFV 247


>gi|119953074|ref|YP_945283.1| flagellar biosynthesis protein FliP [Borrelia turicatae 91E135]
 gi|119861845|gb|AAX17613.1| flagellar biosynthetic protein FliP [Borrelia turicatae 91E135]
          Length = 256

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 76/198 (38%), Positives = 120/198 (60%), Gaps = 7/198 (3%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           +P  L+++T F R  IV   +R  + +   PPN VI+ LALF+T + M PT +   +   
Sbjct: 63  SPAFLVLMTSFLRIAIVLDFIRRALSLQQSPPNQVIMGLALFLTLFTMWPTFNIIYKEAY 122

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRN---NTREKDLSLFMDMAHSSHRNTDITKNDHIE 168
            PL +++I       R   P   FM     N++ +++ LFM +++             + 
Sbjct: 123 LPLQDSKIGFNEFYDRGIAPLRNFMYKQMSNSKHEEIRLFMSISNYPRPK----NFSEVP 178

Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
             +LI SF++ EL+ +F++G LI LPF++ID+IVA ++MAMGM+MLPP  ISLPFK++ F
Sbjct: 179 THVLIASFVLHELKVAFKMGILIFLPFIVIDIIVAAVLMAMGMIMLPPVMISLPFKLMLF 238

Query: 229 VLIDGWSLLVENLVKSFI 246
           V++DGW+L+   LVKSF+
Sbjct: 239 VMVDGWTLITSGLVKSFM 256


>gi|296389923|ref|ZP_06879398.1| type III secretion system protein [Pseudomonas aeruginosa PAb1]
          Length = 219

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 71/196 (36%), Positives = 117/196 (59%), Gaps = 2/196 (1%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT--LDRSIEM 109
            P + +M T F +  +VFS+LR  +G+  +PPN+ +  LA+ ++ YVM+P     R    
Sbjct: 20  VPFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLR 79

Query: 110 GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169
                +++  +    +     P+  F++   +E++ + FM+       +    + D    
Sbjct: 80  NHDVSLSDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSL 139

Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
            IL+P+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P +ISLPFK++ FV
Sbjct: 140 LILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISLPFKLLLFV 199

Query: 230 LIDGWSLLVENLVKSF 245
           L+DGW+ L   LV S+
Sbjct: 200 LLDGWARLTHGLVISY 215


>gi|225552062|ref|ZP_03773002.1| flagellar biosynthetic protein FliP [Borrelia sp. SV1]
 gi|225371060|gb|EEH00490.1| flagellar biosynthetic protein FliP [Borrelia sp. SV1]
          Length = 254

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 83/258 (32%), Positives = 139/258 (53%), Gaps = 16/258 (6%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNI---------PADLSISTWIVRTFGIFTILSI 51
           M +   F LF     L FA++      N              S   + ++   + TI+++
Sbjct: 1   MRKCFNFFLFFSVTSLSFAQTKSLQTTNGLNFPFLNFDSIGGSEIAFSLQLLILLTIITL 60

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           +P  L+++T F R  IV   +R  + +   PP  +++ LALF+T + M PT +   E   
Sbjct: 61  SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNSMYEQAY 120

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNT---REKDLSLFMDMAHSSHRNTDITKNDHIE 168
            PL  ++I       +   P  +FM       R +++ LFM M++             + 
Sbjct: 121 LPLKESKINFNEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSMSNYDRPK----NFSEVP 176

Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
             +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP  ISLPFK+I F
Sbjct: 177 THVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLILF 236

Query: 229 VLIDGWSLLVENLVKSFI 246
           V++DGW+L+   L+KSF+
Sbjct: 237 VMVDGWTLITSGLIKSFM 254


>gi|219684692|ref|ZP_03539635.1| flagellar biosynthetic protein FliP [Borrelia garinii PBr]
 gi|219685749|ref|ZP_03540560.1| flagellar biosynthetic protein FliP [Borrelia garinii Far04]
 gi|219672054|gb|EED29108.1| flagellar biosynthetic protein FliP [Borrelia garinii PBr]
 gi|219672688|gb|EED29716.1| flagellar biosynthetic protein FliP [Borrelia garinii Far04]
          Length = 254

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 70/198 (35%), Positives = 118/198 (59%), Gaps = 7/198 (3%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           +P  L+++T F R  IV   +R  + +   PP  +++ LALF+T + M PT +   +   
Sbjct: 61  SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNVIYKQAY 120

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNT---REKDLSLFMDMAHSSHRNTDITKNDHIE 168
            PL  ++I       +   P  +FM       R +++ LFM +++             + 
Sbjct: 121 LPLKESKINFDEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSISNYDRPK----NFSEVP 176

Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
             +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP  ISLPFK+I F
Sbjct: 177 THVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLILF 236

Query: 229 VLIDGWSLLVENLVKSFI 246
           V++DGW+L+   L+KSF+
Sbjct: 237 VMVDGWTLITSGLIKSFM 254


>gi|49078404|gb|AAT49781.1| PA1693 [synthetic construct]
          Length = 218

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 71/196 (36%), Positives = 117/196 (59%), Gaps = 2/196 (1%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT--LDRSIEM 109
            P + +M T F +  +VFS+LR  +G+  +PPN+ +  LA+ ++ YVM+P     R    
Sbjct: 20  VPFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLR 79

Query: 110 GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169
                +++  +    +     P+  F++   +E++ + FM+       +    + D    
Sbjct: 80  NHDVSLSDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSL 139

Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
            IL+P+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P +ISLPFK++ FV
Sbjct: 140 LILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISLPFKLLLFV 199

Query: 230 LIDGWSLLVENLVKSF 245
           L+DGW+ L   LV S+
Sbjct: 200 LLDGWARLTHGLVISY 215


>gi|84621752|ref|YP_449124.1| type III secretion system protein [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|188574345|ref|YP_001911274.1| type III secretion system protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|7288131|dbj|BAA92826.1| hrpD2 [Xanthomonas oryzae pv. oryzae]
 gi|50428356|dbj|BAD29993.1| HrcR [Xanthomonas oryzae pv. oryzae]
 gi|84365692|dbj|BAE66850.1| HrcR protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188518797|gb|ACD56742.1| type III secretion apparatus protein, YscR/HrcR family [Xanthomonas
           oryzae pv. oryzae PXO99A]
          Length = 214

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 116/205 (56%), Gaps = 1/205 (0%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
              +  +L + P   ++VT + + ++V  +LR  +G+  VPPN+V+  +AL ++ +VM+P
Sbjct: 9   LLLVVIMLGLLPFAAMVVTSYTKIVVVLGLLRNAIGVQQVPPNMVLNGVALLVSCFVMAP 68

Query: 102 TLDRSIEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD 160
               + +        +  +    +     EPF  F+  +T E++ + FM  A        
Sbjct: 69  VGMEAFKAAQNYGAGSDNSRIVVLLDACREPFRQFLLKHTPEREKAFFMRSAQQIWPKDK 128

Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
            T     +  IL P+F +SEL  +F IGFL+ L F++ID++VA  +MAMG+  + PT+++
Sbjct: 129 ATTLKSDDLLILAPAFTLSELTEAFRIGFLLYLVFIVIDLVVANALMAMGLSQVTPTNVA 188

Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245
           +PFK++ FV +DGWS+L+  LV S+
Sbjct: 189 IPFKLLLFVAMDGWSMLIHGLVLSY 213


>gi|319795616|ref|YP_004157256.1| yop virulence translocation r [Variovorax paradoxus EPS]
 gi|315598079|gb|ADU39145.1| Yop virulence translocation R [Variovorax paradoxus EPS]
          Length = 219

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 71/210 (33%), Positives = 122/210 (58%), Gaps = 4/210 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +    +   L +     +MVT + + IIVF +LRT +G+   PPN+V+  +A+ ++ Y+M
Sbjct: 9   ITIVALILALGVTSFAALMVTSYTKLIIVFGLLRTALGLQQTPPNMVLNGIAIILSVYIM 68

Query: 100 SPTLDRSIEMGIQPLMNNQI----TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSS 155
           +P      +      +  +          I     P   F++ +TRE++   F+  A S 
Sbjct: 69  APVGMEVGDALRNRTLGQKGEGLNDIVAVIDAAKVPLKEFLQKHTRERERQFFLKSASSM 128

Query: 156 HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
                  +    ++ +L+PSF +SEL R+F+IGF+I L F+++D+IVAT+++A+GM M+ 
Sbjct: 129 WPQARAAQLQPDDFMVLVPSFTLSELTRAFQIGFVIYLVFVVVDLIVATVLLALGMSMIA 188

Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           PT+ISLPFK++ FV++DGW+ LV  LV S+
Sbjct: 189 PTTISLPFKLLLFVMLDGWTRLVHGLVLSY 218


>gi|329897649|ref|ZP_08272173.1| Flagellar biosynthesis protein fliP [gamma proteobacterium
           IMCC3088]
 gi|328921098|gb|EGG28507.1| Flagellar biosynthesis protein fliP [gamma proteobacterium
           IMCC3088]
          Length = 250

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 91/247 (36%), Positives = 152/247 (61%), Gaps = 5/247 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIV--RTFGIFTILSIAPILLIM 58
           +I+     L ++  ++ F++ ++  V +       + + +  +  G+ TIL++ P LL+M
Sbjct: 4   LIKPGLSLLLVLFADVSFSQGTIPIVTSNALQNGQTEYSITLQLLGLMTILTLLPSLLLM 63

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R IIV S+LR  MG    PPN V++ LALF+T ++M+P      E  IQP +N++
Sbjct: 64  MTSFTRIIIVLSLLRQAMGTAQTPPNQVLLGLALFLTIFIMTPVATVVNEEAIQPYVNSE 123

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           I    A+ R   P   F+   TRE D+  F+ + +    +      + +   IL+P+F+ 
Sbjct: 124 IGLEDALLRAQVPIKTFLLQQTRESDIQTFISLLN---DDVQYNTPNDLPLNILVPAFIA 180

Query: 179 SELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLV 238
           SEL+ +F IGF++ +PF++ID++VA+I+M+MGMMML P  ISLPFK++ FV++DGW+LL+
Sbjct: 181 SELKSAFTIGFMLYIPFVVIDLVVASILMSMGMMMLSPMMISLPFKLLLFVMVDGWNLLI 240

Query: 239 ENLVKSF 245
            +L  SF
Sbjct: 241 GSLAGSF 247


>gi|237678817|emb|CAQ57544.1| RHCR protein [Bradyrhizobium elkanii]
          Length = 221

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 77/213 (36%), Positives = 116/213 (54%), Gaps = 2/213 (0%)

Query: 35  ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFM 94
           I   I+    I   L +    ++  T F +  +V  ++R  +G  S+PPN+V+   AL +
Sbjct: 4   IQPSILALLAITVGLGLLAFAVVTTTAFIKVSVVLFLVRNALGTQSIPPNIVLYGAALIL 63

Query: 95  TFYVMSPTLDRSIEMGIQPLMNNQI--TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
           T ++ +P  +++      P +  Q      TA +   EP    ++  T E+    F+  A
Sbjct: 64  TVFISAPVFEQTYNRLTDPQLRYQTFDDWVTAAKEGQEPLRAHLKKFTNEEQRRFFLSSA 123

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
                          ++ IL+PSF+ISEL+R FEIGFL+ LPF+ ID+IV TI+MAMGM 
Sbjct: 124 EHVWSEEMRGSATADDFVILVPSFLISELKRGFEIGFLLYLPFITIDLIVTTILMAMGMS 183

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+ PT IS+PFK+  FV IDGWS L+  LV S+
Sbjct: 184 MVSPTVISVPFKLFLFVTIDGWSRLMHGLVLSY 216


>gi|149184188|ref|ZP_01862506.1| flagellar biosynthetic protein FliP [Erythrobacter sp. SD-21]
 gi|148831508|gb|EDL49941.1| flagellar biosynthetic protein FliP [Erythrobacter sp. SD-21]
          Length = 255

 Score =  176 bits (446), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 80/188 (42%), Positives = 127/188 (67%), Gaps = 4/188 (2%)

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           M+T F R I+V +ILR  +G+   PPN V+I ++LF++ ++M+PTL+R  E  I P    
Sbjct: 71  MMTSFTRIIVVLAILRQALGLQQSPPNQVLIGISLFLSLFIMTPTLERVNEAAIAPYSAG 130

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
           +I    AI+R  + F  FM   TRE DL +F D+A +            + + IL+P+F+
Sbjct: 131 EIGAEVAIERAGDQFHAFMIRQTREYDLEMFADIAGAGQ----FASPQDVPFSILLPAFV 186

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
            SEL+ +F+IGF++ LPFL+ID++V++++M++GMMM+ P  +SLPFK++ FVL+DGW+LL
Sbjct: 187 TSELKTAFQIGFMLFLPFLVIDLVVSSVLMSLGMMMMSPMMVSLPFKLLLFVLVDGWALL 246

Query: 238 VENLVKSF 245
           + +L  SF
Sbjct: 247 MGSLAASF 254


>gi|51598535|ref|YP_072723.1| flagellar biosynthesis protein FliP [Borrelia garinii PBi]
 gi|51573106|gb|AAU07131.1| flagellar biosynthesis protein [Borrelia garinii PBi]
          Length = 254

 Score =  175 bits (445), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 70/198 (35%), Positives = 118/198 (59%), Gaps = 7/198 (3%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           +P  L+++T F R  IV   +R  + +   PP  +++ LALF+T + M PT +   +   
Sbjct: 61  SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNVIYKQAY 120

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNT---REKDLSLFMDMAHSSHRNTDITKNDHIE 168
            PL  ++I       +   P  +FM       R +++ LFM +++             + 
Sbjct: 121 LPLKESKINFDEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSISNYDRPK----NFSEVP 176

Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
             +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP  ISLPFK+I F
Sbjct: 177 THVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLILF 236

Query: 229 VLIDGWSLLVENLVKSFI 246
           V++DGW+L+   L+KSF+
Sbjct: 237 VMVDGWTLITSGLIKSFM 254


>gi|15596890|ref|NP_250384.1| type III secretion system protein [Pseudomonas aeruginosa PAO1]
 gi|116049643|ref|YP_791552.1| type III secretion system protein [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|254234792|ref|ZP_04928115.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           C3719]
 gi|254240038|ref|ZP_04933360.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           2192]
 gi|313110379|ref|ZP_07796268.1| LOW QUALITY PROTEIN: translocation protein in type III secretion
           [Pseudomonas aeruginosa 39016]
 gi|9947666|gb|AAG05082.1|AE004596_8 translocation protein in type III secretion [Pseudomonas aeruginosa
           PAO1]
 gi|115584864|gb|ABJ10879.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126166723|gb|EAZ52234.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           C3719]
 gi|126193416|gb|EAZ57479.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           2192]
 gi|310882770|gb|EFQ41364.1| LOW QUALITY PROTEIN: translocation protein in type III secretion
           [Pseudomonas aeruginosa 39016]
          Length = 217

 Score =  175 bits (445), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 71/196 (36%), Positives = 117/196 (59%), Gaps = 2/196 (1%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT--LDRSIEM 109
            P + +M T F +  +VFS+LR  +G+  +PPN+ +  LA+ ++ YVM+P     R    
Sbjct: 20  VPFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLR 79

Query: 110 GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169
                +++  +    +     P+  F++   +E++ + FM+       +    + D    
Sbjct: 80  NHDVSLSDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSL 139

Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
            IL+P+F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P +ISLPFK++ FV
Sbjct: 140 LILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISLPFKLLLFV 199

Query: 230 LIDGWSLLVENLVKSF 245
           L+DGW+ L   LV S+
Sbjct: 200 LLDGWARLTHGLVISY 215


>gi|111115100|ref|YP_709718.1| flagellar biosynthesis protein FliP [Borrelia afzelii PKo]
 gi|110890374|gb|ABH01542.1| flagellar biosynthesis protein [Borrelia afzelii PKo]
          Length = 254

 Score =  175 bits (445), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 79/258 (30%), Positives = 137/258 (53%), Gaps = 16/258 (6%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPA---------DLSISTWIVRTFGIFTILSI 51
           M +   F LF     + FA++      N              S   + ++   + TI+++
Sbjct: 1   MRKCFNFFLFFGVTSVSFAQTKSLQATNGLNFPFLNFENIGGSEIAFSLQLLILLTIITL 60

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           +P  L+++T F R  IV   +R  + +   PP  +++ LALF+T + M PT +   +   
Sbjct: 61  SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNVIYKQAY 120

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNT---REKDLSLFMDMAHSSHRNTDITKNDHIE 168
            PL  ++I       +   P  +FM       R +++ LFM ++              + 
Sbjct: 121 LPLKESKINFDEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSISSYDRPK----NFSEVP 176

Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
             +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP  ISLP K+I F
Sbjct: 177 THVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPLKLILF 236

Query: 229 VLIDGWSLLVENLVKSFI 246
           V++DGW+L+   L+KSF+
Sbjct: 237 VMVDGWTLITSGLIKSFM 254


>gi|22124444|ref|NP_667867.1| type III secretion system protein [Yersinia pestis KIM 10]
 gi|108810002|ref|YP_653918.1| type III secretion system protein [Yersinia pestis Antiqua]
 gi|108813557|ref|YP_649324.1| type III secretion system protein [Yersinia pestis Nepal516]
 gi|145600947|ref|YP_001165023.1| type III secretion system protein [Yersinia pestis Pestoides F]
 gi|161511452|ref|NP_991819.2| type III secretion system protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|161760592|ref|YP_068873.2| type III secretion system protein [Yersinia pseudotuberculosis IP
           32953]
 gi|165936558|ref|ZP_02225126.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|170026115|ref|YP_001722620.1| type III secretion system protein [Yersinia pseudotuberculosis
           YPIII]
 gi|186893685|ref|YP_001870797.1| type III secretion system protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|21957231|gb|AAM84118.1|AE013654_7 putative type III secretion system component [Yersinia pestis KIM
           10]
 gi|108777205|gb|ABG19724.1| type III secretion apparatus protein [Yersinia pestis Nepal516]
 gi|108781915|gb|ABG15973.1| putative type III secretion apparatus protein [Yersinia pestis
           Antiqua]
 gi|145212643|gb|ABP42050.1| type III secretion apparatus protein [Yersinia pestis Pestoides F]
 gi|165915674|gb|EDR34283.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|169752649|gb|ACA70167.1| Yop virulence translocation R [Yersinia pseudotuberculosis YPIII]
 gi|186696711|gb|ACC87340.1| Yop virulence translocation R [Yersinia pseudotuberculosis PB1/+]
          Length = 236

 Score =  175 bits (444), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 74/208 (35%), Positives = 123/208 (59%), Gaps = 2/208 (0%)

Query: 41  RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100
           +   +  +LS+ P+L++M T F +  +VFS+LR  +G+  VPPN+ I  LAL +T ++M+
Sbjct: 29  QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA 88

Query: 101 PTLDRSIEMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
           P             ++N I        Q    P+  F++ NT  + ++ F D+  +    
Sbjct: 89  PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE 148

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
                       IL+P+F +S+L  +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +
Sbjct: 149 RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT 208

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +SLPFK++ FVL+DGWSL++  LV S++
Sbjct: 209 LSLPFKLLVFVLVDGWSLVLGQLVGSYL 236


>gi|224534252|ref|ZP_03674830.1| flagellar biosynthetic protein FliP [Borrelia spielmanii A14S]
 gi|224514354|gb|EEF84670.1| flagellar biosynthetic protein FliP [Borrelia spielmanii A14S]
          Length = 254

 Score =  175 bits (444), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 81/258 (31%), Positives = 138/258 (53%), Gaps = 16/258 (6%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPA---------DLSISTWIVRTFGIFTILSI 51
           M +   F LF     L FA++      N              S   + ++   + TI+++
Sbjct: 1   MRKCFIFFLFFSVTSLSFAQTKSFQSTNGLNFPFLNFENISGSEIAFSLQLLILLTIITL 60

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           +P  L+++T F R  IV   +R  + +   PP  +++ LALF+T + M PT +   +   
Sbjct: 61  SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNVIYKQAY 120

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNT---REKDLSLFMDMAHSSHRNTDITKNDHIE 168
            PL  ++I       +   P  +FM       R +++ LFM ++              + 
Sbjct: 121 LPLKESKINFDEFYNKGIAPLRIFMYKQMSDGRHEEIRLFMSISSYDRPK----NFSEVP 176

Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
             +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP  ISLPFK+I F
Sbjct: 177 THVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLILF 236

Query: 229 VLIDGWSLLVENLVKSFI 246
           V++DGW+L+   L+KSF+
Sbjct: 237 VMVDGWTLITSGLIKSFM 254


>gi|329889296|ref|ZP_08267639.1| hypothetical protein BDIM_09760 [Brevundimonas diminuta ATCC 11568]
 gi|328844597|gb|EGF94161.1| hypothetical protein BDIM_09760 [Brevundimonas diminuta ATCC 11568]
          Length = 219

 Score =  175 bits (444), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 78/208 (37%), Positives = 125/208 (60%), Gaps = 4/208 (1%)

Query: 43  FGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT 102
                +L++AP + +MVT F + ++V S+LR  +G+  VPPN+V+  +AL +T YVM P 
Sbjct: 12  LVTVILLALAPFVAVMVTSFTKIVVVLSLLRNALGLQQVPPNIVLNGMALILTLYVMFPV 71

Query: 103 LDRSIEMGIQPLMNNQITETTAI----QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
             R  E          +++T  +        EP   F+  ++ E++ + F+  A      
Sbjct: 72  GQRMAEATNHMPPTAALSDTQQLFAYADSAKEPLRDFLIKHSSERERAFFLRTAQRISTP 131

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
               +    ++ +++P+F +SEL  +F+IGFLI LPFLIID++V+ I++AMGMMML PT+
Sbjct: 132 EKRAEITARDFLVVVPAFTVSELATAFQIGFLIFLPFLIIDLVVSNILLAMGMMMLSPTT 191

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +SLPFK++ FVLIDGW  L   LV S++
Sbjct: 192 VSLPFKLLLFVLIDGWVKLSHGLVLSYV 219


>gi|152990381|ref|YP_001356103.1| flagellar transport protein FliP [Nitratiruptor sp. SB155-2]
 gi|151422242|dbj|BAF69746.1| flagellar transport protein FliP [Nitratiruptor sp. SB155-2]
          Length = 236

 Score =  175 bits (444), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 94/245 (38%), Positives = 162/245 (66%), Gaps = 10/245 (4%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           M ++     F+  P  +FA + ++ +++   ++  +   ++   +FTILS+AP +LI +T
Sbjct: 1   MRKFLLLLPFIGIP--LFAANEINALLDQLKNVDTT---LKILALFTILSLAPAILITMT 55

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R +IV  +LR  +G+   PPN VII+L+LF+TF++M P  D+     +QP M +++ 
Sbjct: 56  SFTRIVIVLGLLRQALGIPQSPPNQVIIALSLFLTFFIMKPVFDQIYVDAVQPYMQHKLN 115

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
           +  A++    P   F+ NNT++++L LF+D+  ++ +       + I   +L+P+F++SE
Sbjct: 116 DMQAVEAAMRPIKKFLVNNTQKEELKLFLDINKTTPK-----DYNDISLSVLLPAFLVSE 170

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           ++ +FEI F+I LPFL+IDM+VA+I+M+MGMMM+PP  ISLPFK+I F+L DGW LL++ 
Sbjct: 171 IKIAFEIAFVIFLPFLVIDMLVASILMSMGMMMIPPMMISLPFKLILFILSDGWELLIKA 230

Query: 241 LVKSF 245
           L+K +
Sbjct: 231 LIKGY 235


>gi|282891201|ref|ZP_06299704.1| type III secretion inner membrane protein SctR [Parachlamydia
           acanthamoebae str. Hall's coccus]
 gi|281498894|gb|EFB41210.1| type III secretion inner membrane protein SctR [Parachlamydia
           acanthamoebae str. Hall's coccus]
          Length = 319

 Score =  175 bits (443), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 66/218 (30%), Positives = 127/218 (58%), Gaps = 11/218 (5%)

Query: 39  IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
           ++    + TILS+ P +++++T F + +IV S+LR+ +G+   PPN +I  +A  ++ ++
Sbjct: 101 LITQAIVLTILSLLPFIIMILTSFLKIVIVLSLLRSALGVQQAPPNQIINGVAFMLSLFI 160

Query: 99  MSPTLDRSIEMGIQPLMNNQITET-----------TAIQRVAEPFWVFMRNNTREKDLSL 147
           M PT+ +  +     + + +  ++                  EP  +F++ N+  K  +L
Sbjct: 161 MYPTVLKMYDAAQSVIESTRAPDSLVSVESSKYIVDVADASKEPLRMFLKRNSSVKHQAL 220

Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
           F  MA+              ++ I++P+++ S+L+ +FEIG LI +PF +ID++ + I++
Sbjct: 221 FYRMAYRILPENYRATLKPDDFMIVVPAYITSQLKDAFEIGVLIYIPFFVIDLVTSNILL 280

Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           AMGMMML P +IS+P K+   V++DGW+LL++ LV +F
Sbjct: 281 AMGMMMLSPVTISMPLKLFLLVMLDGWTLLIDGLVNTF 318


>gi|289670559|ref|ZP_06491634.1| flagellar biosynthesis protein FliP [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 276

 Score =  175 bits (443), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 88/224 (39%), Positives = 132/224 (58%), Gaps = 4/224 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           SL +V          +  ++T  + T +++ P +L+++T F R  IV  +LR  +G G  
Sbjct: 54  SLPNVSVGRIGDQPVSLPLQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQT 113

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           P N V++ L++F+T  VM P   +    G+QP +NNQI  +TA     +P   FM    R
Sbjct: 114 PSNQVLLGLSMFLTALVMMPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIR 173

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           E DL  F  MA            D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++
Sbjct: 174 ETDLMTFAGMAGDGK----YAGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLV 229

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           VA+++M+MGMMML P  IS PFK++ F+L+DGW L+V  L  SF
Sbjct: 230 VASVLMSMGMMMLSPMLISAPFKILLFILVDGWVLVVGTLAASF 273


>gi|330505666|ref|YP_004382535.1| flagellar biosynthesis protein FliP [Pseudomonas mendocina NK-01]
 gi|328919952|gb|AEB60783.1| flagellar biosynthesis protein FliP [Pseudomonas mendocina NK-01]
          Length = 250

 Score =  174 bits (442), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 83/228 (36%), Positives = 126/228 (55%), Gaps = 4/228 (1%)

Query: 17  VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
                      N   D    +  ++   I T+L   P LL+M+TCF RFIIV +ILR  +
Sbjct: 23  AAGGDITLFNFNDTEDGQTLSVKLQILLIMTLLGFLPALLMMMTCFTRFIIVLAILRQAI 82

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G+   PPN V+I +AL +T  VM P           P   +QI+    +         FM
Sbjct: 83  GLQQSPPNPVLIGIALCLTLLVMRPVWQEMYTEAYVPFEADQISLEQGLGEGKRIISQFM 142

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
              T +  L   + +A     +        +++ +L+P+F++SEL+ +F++GF+I +PFL
Sbjct: 143 LAQTSKNSLETLVALADEEMPDDLAQ----LDFSLLLPAFVLSELKTAFQLGFMIFVPFL 198

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           +ID++VA+++MAMGMMML P  ISLPFK++ FVL+DGW+LLV  L  S
Sbjct: 199 VIDLVVASVLMAMGMMMLSPMMISLPFKLLVFVLVDGWTLLVGTLTTS 246


>gi|311232389|gb|ADP85243.1| flagellar biosynthetic protein FliP [Desulfovibrio vulgaris RCH1]
          Length = 232

 Score =  174 bits (442), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 85/210 (40%), Positives = 134/210 (63%), Gaps = 4/210 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  +    + T+LS+AP +++ VT F R IIVF  +R  +G+ ++PP+ V+ SLA+FMT 
Sbjct: 26  SLTLEILFMLTVLSLAPAIMLTVTSFTRIIIVFHFVRQALGVQALPPSQVLASLAIFMTV 85

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
            +M+P      +  +QP +  +I    A+++   P   FM  +TREKDLS+F  +     
Sbjct: 86  VIMTPVGKEINDNALQPYLREEIGFNEALKKAEAPMRTFMFKHTREKDLSVFYAVTKMEQ 145

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
                   D +   +L   ++ISEL+  F IGFLI +PFLI+DM++++I++AMGMMMLPP
Sbjct: 146 PR----SKDDVPTIMLAAGYVISELKTGFTIGFLIYIPFLILDMVISSILLAMGMMMLPP 201

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
             +S+PFK++ FV++DGW LLV +LV SF+
Sbjct: 202 MMVSMPFKLLLFVMVDGWGLLVGSLVNSFM 231


>gi|167567944|ref|ZP_02360860.1| type III secretion system protein [Burkholderia oklahomensis EO147]
 gi|167573182|ref|ZP_02366056.1| type III secretion system protein [Burkholderia oklahomensis C6786]
          Length = 216

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 61/206 (29%), Positives = 123/206 (59%), Gaps = 2/206 (0%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
              I   +S+ P + ++VT + + ++V  +LR  +G+  VPPN+V+  +A+  + YVM+P
Sbjct: 10  LLLIVVAISLLPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILASLYVMAP 69

Query: 102 TLDRSIE--MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
              ++ +   G Q    +      A+    EPF  F+  +T+E++   F+  A       
Sbjct: 70  VGMQAAKSLDGQQLASQSSQALIQALSAAREPFRAFLEKHTQEREKRFFIRSATVIWPKD 129

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           + ++    +  +L P+F +SEL  +F+IGFL+ + F+I+D+++A +++A+G+  + PT++
Sbjct: 130 EASRLSEHDLVVLAPAFALSELTDAFKIGFLLYITFIIVDLVIANVLLALGLNQVTPTNV 189

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++PFK++ FV++DGWS L+  LV ++
Sbjct: 190 AIPFKLLLFVVMDGWSALIHGLVMTY 215


>gi|46445836|ref|YP_007201.1| type III secretion system protein [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399477|emb|CAF22926.1| putative type III secretion inner membrane protein SctR [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 323

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 59/204 (28%), Positives = 115/204 (56%), Gaps = 11/204 (5%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +++++T F + ++V S+LRT +G+   PPN +I  +A  ++ ++M PT  +  +    
Sbjct: 119 PFIIMILTSFLKIVVVLSLLRTALGVQQAPPNQIINGVAFLLSLFIMYPTAIKMYDAAQT 178

Query: 113 PLMNNQITET-----------TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
            +    + E+                 + P   +++ N+  +  +LF  + +        
Sbjct: 179 AINQPNVPESFLSPGSSTYVIEVASAASGPMKEYLKRNSSSRHQALFYRLVYRGLPEDYR 238

Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
                 ++ +L+PS++  +L+ +FEIG LI +PF +ID++ + I++AMGMMML P +IS+
Sbjct: 239 ETLKPDDFIVLVPSYITGQLKDAFEIGVLIYIPFFVIDLVTSNILLAMGMMMLSPVTISM 298

Query: 222 PFKVIFFVLIDGWSLLVENLVKSF 245
           P K+   V++DGW++L+E LVK+F
Sbjct: 299 PLKLFLLVMLDGWTILIEGLVKTF 322


>gi|254497497|ref|ZP_05110290.1| truncated flagellar biosynthesis protein FliP [Legionella
           drancourtii LLAP12]
 gi|254353312|gb|EET12054.1| truncated flagellar biosynthesis protein FliP [Legionella
           drancourtii LLAP12]
          Length = 189

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 84/191 (43%), Positives = 127/191 (66%), Gaps = 5/191 (2%)

Query: 55  LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
           +L+ +T F R IIV SILR  +G+   P N V+I +ALFMT++VM+PT ++  +  +QP 
Sbjct: 1   MLMAMTAFTRIIIVLSILRQAIGLAQAPTNQVLIGIALFMTYFVMAPTFNKINDTALQPY 60

Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
           +   I    A+    EP   FM N TR+ DL+LF   A     N      + +   ++IP
Sbjct: 61  LAETIKFPQAMANAQEPLRDFMLNQTRKNDLALFEKFA-----NKQPASLNDVPMSVIIP 115

Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234
           +F+ SEL+ +F+IGF++ LPFLIID++V++++MAMGMMML P  ISLPFK++ FV++DGW
Sbjct: 116 AFITSELKTAFQIGFILFLPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIMLFVMVDGW 175

Query: 235 SLLVENLVKSF 245
           +L++ +L  SF
Sbjct: 176 TLILGSLASSF 186


>gi|27376930|ref|NP_768459.1| type III secretion system protein [Bradyrhizobium japonicum USDA
           110]
 gi|12620526|gb|AAG60802.1|AF322012_107 RhcR [Bradyrhizobium japonicum]
 gi|27350072|dbj|BAC47084.1| RhcR protein [Bradyrhizobium japonicum USDA 110]
          Length = 221

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 76/213 (35%), Positives = 115/213 (53%), Gaps = 2/213 (0%)

Query: 35  ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFM 94
           I   I+    I   L +    ++  T F +  +V  ++R  +G  S+PPN+V+   AL +
Sbjct: 4   IQPSILALLAITVGLGLLAFAVVTTTAFIKVSVVLFLVRNALGTQSIPPNIVLYGAALIL 63

Query: 95  TFYVMSPTLDRSIEMGIQPLMNNQ--ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
           T ++ +P  +++      P +  Q       A +   EP  V ++  T E+    F+   
Sbjct: 64  TVFISAPVFEQTYNRLTDPQLRYQSFDDWVMAAKEGQEPLRVHLKKFTNEEQRRFFLSST 123

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
                          ++ IL+PSF+ISEL+R FEIGFL+ LPF+ ID+IV TI+MAMGM 
Sbjct: 124 EHVWSEEMRGSVTADDFSILVPSFLISELKRGFEIGFLLYLPFITIDLIVTTILMAMGMS 183

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+ PT IS+PFK+  FV IDGWS L+  LV S+
Sbjct: 184 MVSPTVISVPFKLFLFVTIDGWSRLMHGLVLSY 216


>gi|53724243|ref|YP_104210.1| flagellar biosynthesis protein FliP [Burkholderia mallei ATCC
           23344]
 gi|67641568|ref|ZP_00440344.1| flagellar biosynthetic protein FliP [Burkholderia mallei GB8 horse
           4]
 gi|167001619|ref|ZP_02267413.1| flagellar biosynthetic protein FliP [Burkholderia mallei PRL-20]
 gi|254201283|ref|ZP_04907647.1| flagellar biosynthetic protein FliP [Burkholderia mallei FMH]
 gi|254206625|ref|ZP_04912976.1| flagellar biosynthetic protein FliP [Burkholderia mallei JHU]
 gi|254357358|ref|ZP_04973632.1| flagellar biosynthetic protein FliP [Burkholderia mallei
           2002721280]
 gi|52427666|gb|AAU48259.1| flagellar biosynthetic protein FliP, interruption-C [Burkholderia
           mallei ATCC 23344]
 gi|147747177|gb|EDK54253.1| flagellar biosynthetic protein FliP [Burkholderia mallei FMH]
 gi|147752167|gb|EDK59233.1| flagellar biosynthetic protein FliP [Burkholderia mallei JHU]
 gi|148026422|gb|EDK84507.1| flagellar biosynthetic protein FliP [Burkholderia mallei
           2002721280]
 gi|238522521|gb|EEP85965.1| flagellar biosynthetic protein FliP [Burkholderia mallei GB8 horse
           4]
 gi|243062629|gb|EES44815.1| flagellar biosynthetic protein FliP [Burkholderia mallei PRL-20]
          Length = 175

 Score =  174 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 79/177 (44%), Positives = 117/177 (66%), Gaps = 4/177 (2%)

Query: 69  FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128
            S+LR  +G  S PPN V++ LALF+T +VMSP LDR+     +P     +    A+QR 
Sbjct: 2   LSLLRQAIGTASTPPNQVLVGLALFLTLFVMSPVLDRAYNDAYKPFSEGTLQMDQAVQRG 61

Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188
             PF  FM   TRE DL+LF  ++    +   +   + +   +L+P+F+ SEL+  F+IG
Sbjct: 62  TAPFKAFMLKQTRETDLALFAKIS----KAAPMQGPEDVPLSLLVPAFVTSELKTGFQIG 117

Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           F I +PFLIIDM+VA+++M+MGMMM+ P ++SLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 118 FTIFIPFLIIDMVVASVLMSMGMMMVSPATVSLPFKLMLFVLVDGWQLLIGSLAQSF 174


>gi|146309436|ref|YP_001189901.1| flagellar biosynthesis protein FliP [Pseudomonas mendocina ymp]
 gi|145577637|gb|ABP87169.1| flagellar biosynthetic protein FliP [Pseudomonas mendocina ymp]
          Length = 250

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 82/228 (35%), Positives = 125/228 (54%), Gaps = 4/228 (1%)

Query: 17  VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGM 76
                      N   D    +  ++   I T+L   P +L+M+TCF RFIIV +ILR  +
Sbjct: 23  AAGGDITLFNFNDSEDGQTLSVKLQILLIMTLLGFLPAMLMMMTCFTRFIIVLAILRQAI 82

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFM 136
           G+   PPN V+I +AL +T  VM P           P   +QI+    +         FM
Sbjct: 83  GLQQSPPNPVLIGIALCLTLLVMRPVWQEMYTEAYVPFEADQISLEQGLGEGKRIISQFM 142

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
              T +  L   + +A              +++ +L+P+F++SEL+ +F++GF+I +PFL
Sbjct: 143 LAQTSKNSLETLVALAGEELPEDLAQ----LDFSLLLPAFVLSELKTAFQLGFMIFVPFL 198

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           +ID++VA+++MAMGMMML P  ISLPFK++ FVL+DGW+LLV  L  S
Sbjct: 199 VIDLVVASVLMAMGMMMLSPMMISLPFKLLVFVLVDGWTLLVGTLTSS 246


>gi|325917745|ref|ZP_08179932.1| flagellar biosynthetic protein FliP [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536044|gb|EGD07853.1| flagellar biosynthetic protein FliP [Xanthomonas vesicatoria ATCC
           35937]
          Length = 280

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 88/223 (39%), Positives = 131/223 (58%), Gaps = 4/223 (1%)

Query: 23  LHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVP 82
           L +V          +  ++T  + T +++ P +L+++T F R  IV  +LR  +G G  P
Sbjct: 59  LPNVSVGRIGDQPVSLPLQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQTP 118

Query: 83  PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142
            N V++ LA+F+T  VM P   +    G+QP +NNQI  +TA     +P   FM    RE
Sbjct: 119 SNQVLLGLAMFLTALVMMPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIRE 178

Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202
            DL  F  MA            D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++V
Sbjct: 179 TDLMTFAGMAGDGK----YAGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLVV 234

Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           A+++M+MGMMML P  IS PFK++ F+L+DGW L+V  L  SF
Sbjct: 235 ASVLMSMGMMMLSPMLISAPFKILLFILVDGWVLVVGTLAASF 277


>gi|303326581|ref|ZP_07357024.1| flagellar biosynthetic protein FliP [Desulfovibrio sp. 3_1_syn3]
 gi|302864497|gb|EFL87428.1| flagellar biosynthetic protein FliP [Desulfovibrio sp. 3_1_syn3]
          Length = 225

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 87/210 (41%), Positives = 137/210 (65%), Gaps = 4/210 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           + ++    + T+LS+AP +++ VT F R IIVFS LR  MG+  +PP  ++ SLA+FMT 
Sbjct: 19  SVLLEILFLLTVLSVAPAIMLTVTSFTRIIIVFSFLRQAMGVQQLPPTQILASLAIFMTV 78

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
            +M P   +  +  +QP +N QI    A+ R   P   FM  +TREKDLS+F  +     
Sbjct: 79  VIMFPVGKQINDQALQPYLNEQIDYKVALDRAQAPLRTFMFKHTREKDLSVFYAITQMEL 138

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
                   + +   +L  +++ISEL+ +F IGFLI +PFL++DM+++++++AMGMMMLPP
Sbjct: 139 PK----NKEEVPTMLLAAAYVISELKTAFTIGFLIYIPFLVLDMVISSVLLAMGMMMLPP 194

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
             +S+PFK++ FV++DGW+LLV +LV SF+
Sbjct: 195 MMVSMPFKLLLFVMVDGWNLLVGSLVNSFL 224


>gi|304321125|ref|YP_003854768.1| flagellar biosynthetic protein FliP [Parvularcula bermudensis
           HTCC2503]
 gi|303300027|gb|ADM09626.1| flagellar biosynthetic protein FliP [Parvularcula bermudensis
           HTCC2503]
          Length = 246

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 91/242 (37%), Positives = 145/242 (59%), Gaps = 6/242 (2%)

Query: 5   CFFALFLVTPELVFAKSSLHDVMNIPA-DLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
                 L++P +  A+ +   V  +P    S+   I+      T+LS+AP +L+M+TC P
Sbjct: 8   IIAGALLLSPAV--AQEAPSFVEGLPDMGGSLRGDIIPLLLTVTVLSLAPGILMMITCLP 65

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
             +IVFS LR  +G+   PP+++I++LALF+TF+VM P   ++ E GI P    +I E T
Sbjct: 66  LMVIVFSFLRQALGIPQSPPSMMIMALALFLTFFVMEPVFQQAWEAGIAPYQEGEIDEQT 125

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
           A +    PF VFM     +  ++    ++ S     D    + +   +L+PSFM+SE++ 
Sbjct: 126 AFREAIAPFRVFMEARVHDSTIAA---LSESLPERWDEDVMETVPLSLLVPSFMLSEIKT 182

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
           +F+IGF + LPFL ID++ A ++MAMGMMM+PP  +SLPFK+ FFV+ DGW+ L   L++
Sbjct: 183 AFQIGFAVFLPFLAIDLVTAAVLMAMGMMMVPPAVVSLPFKLAFFVMADGWTKLSAALLR 242

Query: 244 SF 245
            +
Sbjct: 243 GY 244


>gi|254523353|ref|ZP_05135408.1| flagellar biosynthetic protein FliP [Stenotrophomonas sp. SKA14]
 gi|219720944|gb|EED39469.1| flagellar biosynthetic protein FliP [Stenotrophomonas sp. SKA14]
          Length = 259

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 89/225 (39%), Positives = 133/225 (59%), Gaps = 4/225 (1%)

Query: 21  SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
           + L D+       +  +  ++T  + T +++ P +L+++T F R IIV  +LR  +G G 
Sbjct: 36  TPLPDINVGKIGGAPVSLPLQTLLLMTAITLIPSMLLVLTSFTRIIIVLGLLRQALGTGQ 95

Query: 81  VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
            P N V++ LALF+T  VM PT D++   G+ P +N +I   TA      P   FM    
Sbjct: 96  TPSNQVLLGLALFLTAMVMMPTWDKAWSTGMAPYLNGEIDFQTAWTLTTTPLRGFMLAQI 155

Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
           RE DL  F  +A     +      D I + +L+ SF+ SEL+ +FEIGFLI +PF+IID+
Sbjct: 156 RETDLMTFAGIAG----HGTYASPDAIPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDL 211

Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +VA+++M+MGMMML P  +S PFK++ FVL+DGW L V  L  SF
Sbjct: 212 VVASVLMSMGMMMLSPMLVSAPFKILLFVLVDGWVLTVGTLAASF 256


>gi|224531662|ref|ZP_03672294.1| flagellar biosynthetic protein FliP [Borrelia valaisiana VS116]
 gi|224511127|gb|EEF81533.1| flagellar biosynthetic protein FliP [Borrelia valaisiana VS116]
          Length = 254

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 70/198 (35%), Positives = 117/198 (59%), Gaps = 7/198 (3%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           +P  L+++T F R  IV   +R  + +   PP  +I+ LALF+T + M PT +   +   
Sbjct: 61  SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIIMGLALFLTIFTMWPTFNVIYKQAY 120

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTR---EKDLSLFMDMAHSSHRNTDITKNDHIE 168
            PL  ++I       +   P  +FM         +++ LFM +++             + 
Sbjct: 121 LPLKESKINFDEFYNKGIAPLRIFMYKQMSDGSHEEIRLFMSISNYDRPK----NFSEVP 176

Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
             +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP  ISLPFK+I F
Sbjct: 177 THVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLPFKLILF 236

Query: 229 VLIDGWSLLVENLVKSFI 246
           V++DGW+L+   L+KSF+
Sbjct: 237 VMVDGWTLITSGLIKSFM 254


>gi|46578461|ref|YP_009269.1| flagellar biosynthesis protein FliP [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120603955|ref|YP_968355.1| flagellar biosynthesis protein FliP [Desulfovibrio vulgaris DP4]
 gi|46447872|gb|AAS94528.1| flagellar biosynthetic protein fliP [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120564184|gb|ABM29928.1| flagellar biosynthetic protein FliP [Desulfovibrio vulgaris DP4]
          Length = 235

 Score =  173 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 85/210 (40%), Positives = 134/210 (63%), Gaps = 4/210 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  +    + T+LS+AP +++ VT F R IIVF  +R  +G+ ++PP+ V+ SLA+FMT 
Sbjct: 29  SLTLEILFMLTVLSLAPAIMLTVTSFTRIIIVFHFVRQALGVQALPPSQVLASLAIFMTV 88

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
            +M+P      +  +QP +  +I    A+++   P   FM  +TREKDLS+F  +     
Sbjct: 89  VIMTPVGKEINDNALQPYLREEIGFNEALKKAEAPMRTFMFKHTREKDLSVFYAVTKMEQ 148

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
                   D +   +L   ++ISEL+  F IGFLI +PFLI+DM++++I++AMGMMMLPP
Sbjct: 149 PR----SKDDVPTIMLAAGYVISELKTGFTIGFLIYIPFLILDMVISSILLAMGMMMLPP 204

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
             +S+PFK++ FV++DGW LLV +LV SF+
Sbjct: 205 MMVSMPFKLLLFVMVDGWGLLVGSLVNSFM 234


>gi|190574229|ref|YP_001972074.1| flagellar biosynthesis protein FliP [Stenotrophomonas maltophilia
           K279a]
 gi|194365647|ref|YP_002028257.1| flagellar biosynthesis protein FliP [Stenotrophomonas maltophilia
           R551-3]
 gi|190012151|emb|CAQ45774.1| putative flagellar biosynthetic protein [Stenotrophomonas
           maltophilia K279a]
 gi|194348451|gb|ACF51574.1| flagellar biosynthetic protein FliP [Stenotrophomonas maltophilia
           R551-3]
          Length = 259

 Score =  173 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 89/225 (39%), Positives = 133/225 (59%), Gaps = 4/225 (1%)

Query: 21  SSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGS 80
           + L D+       +  +  ++T  + T +++ P +L+++T F R IIV  +LR  +G G 
Sbjct: 36  TPLPDINVGKIGGAPVSLPLQTLLLMTAITLIPSMLLVLTSFTRIIIVLGLLRQALGTGQ 95

Query: 81  VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNT 140
            P N V++ LALF+T  VM PT D++   G+ P +N +I   TA      P   FM    
Sbjct: 96  TPSNQVLLGLALFLTAMVMMPTWDKAWSTGMAPYLNGEIDFQTAWTLTTTPLRGFMLAQI 155

Query: 141 REKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
           RE DL  F  +A     +      D I + +L+ SF+ SEL+ +FEIGFLI +PF+IID+
Sbjct: 156 RETDLMTFAGIAG----HGTYASPDAIPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDL 211

Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +VA+++M+MGMMML P  +S PFK++ FVL+DGW L V  L  SF
Sbjct: 212 VVASVLMSMGMMMLSPMLVSAPFKILLFVLVDGWVLTVGTLAASF 256


>gi|188991607|ref|YP_001903617.1| flagellar biosynthesis protein FliP [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167733367|emb|CAP51568.1| Flagellar biosynthetic protein fliP [Xanthomonas campestris pv.
           campestris]
          Length = 280

 Score =  173 bits (438), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 88/224 (39%), Positives = 132/224 (58%), Gaps = 4/224 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           +L +V          +  ++T  + T +++ P +L+++T F R  IV  +LR  +G G  
Sbjct: 58  TLPNVSVGRIGDQPVSLPLQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQT 117

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           P N V++ LA+F+T  VM P   +    G+QP +NNQI  +TA     +P   FM    R
Sbjct: 118 PSNQVLLGLAMFLTALVMMPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIR 177

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           E DL  F  MA            D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++
Sbjct: 178 ETDLMTFAGMAGDGK----YAGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLV 233

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           VA+++M+MGMMML P  IS PFK++ F+L+DGW L+V  L  SF
Sbjct: 234 VASVLMSMGMMMLSPMLISAPFKILLFILVDGWVLVVGTLAASF 277


>gi|294664068|ref|ZP_06729470.1| flagellar biosynthesis pathway component FliP [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|292606171|gb|EFF49420.1| flagellar biosynthesis pathway component FliP [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
          Length = 281

 Score =  172 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 89/224 (39%), Positives = 132/224 (58%), Gaps = 4/224 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           SL +V          +  ++T  + T +++ P +L+++T F R  IV  +LR  +G G  
Sbjct: 59  SLPNVSVGRIGDQPVSLPLQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQT 118

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           P N V++ LA+F+T  VM P   +    G+QP +NNQI  +TA     +P   FM    R
Sbjct: 119 PSNQVLLGLAMFLTALVMMPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIR 178

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           E DL  F  MA            D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++
Sbjct: 179 ETDLMTFAGMAGDGK----YAGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLV 234

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           VA+++M+MGMMML P  IS PFK++ F+L+DGW L+V  L  SF
Sbjct: 235 VASVLMSMGMMMLSPMLISAPFKILLFILVDGWVLVVGTLAASF 278


>gi|78047544|ref|YP_363719.1| flagellar biosynthesis protein FliP [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78035974|emb|CAJ23665.1| flagellar biosynthesis pathway component FliP [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 281

 Score =  172 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 89/224 (39%), Positives = 132/224 (58%), Gaps = 4/224 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           SL +V          +  ++T  + T +++ P +L+++T F R  IV  +LR  +G G  
Sbjct: 59  SLPNVSVGRIGDQPVSLPLQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQT 118

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           P N V++ LA+F+T  VM P   +    G+QP +NNQI  +TA     +P   FM    R
Sbjct: 119 PSNQVLLGLAMFLTALVMMPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIR 178

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           E DL  F  MA            D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++
Sbjct: 179 ETDLMTFAGMAGDGK----YAGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLV 234

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           VA+++M+MGMMML P  IS PFK++ F+L+DGW L+V  L  SF
Sbjct: 235 VASVLMSMGMMMLSPMLISAPFKILLFILVDGWVLVVGTLAASF 278


>gi|330443947|ref|YP_004376933.1| YscR/HrcR family type III secretion apparatus protein
           [Chlamydophila pecorum E58]
 gi|328807057|gb|AEB41230.1| type III secretion apparatus protein, YscR/HrcR family
           [Chlamydophila pecorum E58]
          Length = 305

 Score =  172 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 68/213 (31%), Positives = 119/213 (55%), Gaps = 11/213 (5%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            I   L+++P L++++T + + II   +LR  +G+   PP+ V+  +AL ++ YVM PT 
Sbjct: 92  VILIFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTG 151

Query: 104 DRSIEMGIQPLMNNQI-----------TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
               +   + +  N I           T   A  +  EP   F+  NT +  +  F  ++
Sbjct: 152 AAMYKDAKKEIEANTIPRNLFTAEGAETVFVAFNKSKEPLRNFLIRNTPKAQIQSFYKIS 211

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
             +            ++ I+IP+F++ +++ +FEIG +I LPF +ID++ A I++AM MM
Sbjct: 212 QKTFPAEIREHLSATDFVIVIPAFIMGQIKNAFEIGVMIYLPFFVIDLVTANILVAMQMM 271

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ML P SISLP K++  V++DGW+LL++ L+ SF
Sbjct: 272 MLSPLSISLPLKLLLVVMVDGWTLLLQGLMISF 304


>gi|62185507|ref|YP_220292.1| type III secretion system protein [Chlamydophila abortus S26/3]
 gi|62148574|emb|CAH64346.1| putative type III export protein [Chlamydophila abortus S26/3]
          Length = 305

 Score =  172 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 68/213 (31%), Positives = 119/213 (55%), Gaps = 11/213 (5%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            I   L+++P L++++T + + II   +LR  +G+   PP+ V+  +AL ++ YVM PT 
Sbjct: 92  VILIFLALSPFLMMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTG 151

Query: 104 DRSIEMGIQPLMNNQI-----------TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
                   + +  N I           T   A+ +  EP   F+  NT +  +  F  ++
Sbjct: 152 VAMYNDARKEIQGNAIPRDLFSAEGAETVFVALNKSKEPLRSFLIRNTPKSQIQSFYKIS 211

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
             +            ++ I+IP+F++ +++ +FEIG LI LPF +ID++ A +++AM MM
Sbjct: 212 QKTFPPEIREHMTASDFVIVIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQMM 271

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ML P SISLP K++  V++DGW+LL++ L+ SF
Sbjct: 272 MLSPLSISLPLKLLLVVMVDGWTLLLQGLMISF 304


>gi|255264563|ref|ZP_05343905.1| flagellar biosynthetic protein FliP [Thalassiobium sp. R2A62]
 gi|255106898|gb|EET49572.1| flagellar biosynthetic protein FliP [Thalassiobium sp. R2A62]
          Length = 243

 Score =  172 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 94/234 (40%), Positives = 141/234 (60%), Gaps = 6/234 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           +IR+ F AL L +   V A+      ++   D S++   ++   + TILSI P L IM+T
Sbjct: 4   LIRFSFLALALFSATSVTAQEI---SLSFGDDASLAGRSIQLLALVTILSIVPGLAIMIT 60

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
           CFP  + V +ILR  +G+   PPN++I+SLALF+T++VM P    S  +GI PL   ++ 
Sbjct: 61  CFPFIVTVLAILRQAIGLQQSPPNMLIVSLALFLTYFVMEPVFIESWTLGIGPLSTGELE 120

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A+     PF  FM       D + F  +     +++           ++IPSF++SE
Sbjct: 121 IEPALANAISPFRDFMA---LRIDPNTFQTLTDIRPQSSTSEDIASAPLSLMIPSFLLSE 177

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234
           + R+F++GFLI LPFLIID++VA I+M+MGMMM+PP  +SLPFK+ FFV+ DGW
Sbjct: 178 IERAFQVGFLIFLPFLIIDLVVAAILMSMGMMMVPPAIVSLPFKLAFFVIADGW 231


>gi|329943276|ref|ZP_08292050.1| hypothetical protein G5Q_0966 [Chlamydophila psittaci Cal10]
 gi|332287854|ref|YP_004422755.1| secretion and cellular translocation protein R [Chlamydophila
           psittaci 6BC]
 gi|84785894|gb|ABC62086.1| secretion and cellular translocation protein R [Chlamydophila
           psittaci]
 gi|313848426|emb|CBY17430.1| putative type III export protein [Chlamydophila psittaci RD1]
 gi|325506962|gb|ADZ18600.1| secretion and cellular translocation protein R [Chlamydophila
           psittaci 6BC]
 gi|328814823|gb|EGF84813.1| hypothetical protein G5Q_0966 [Chlamydophila psittaci Cal10]
 gi|328915116|gb|AEB55949.1| type III secretion inner membrane protein SctR [Chlamydophila
           psittaci 6BC]
          Length = 305

 Score =  172 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 68/213 (31%), Positives = 119/213 (55%), Gaps = 11/213 (5%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            I   L+++P L++++T + + II   +LR  +G+   PP+ V+  +AL ++ YVM PT 
Sbjct: 92  VILIFLALSPFLMMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTG 151

Query: 104 DRSIEMGIQPLMNNQI-----------TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
                   + +  N I           T   A+ +  EP   F+  NT +  +  F  ++
Sbjct: 152 VAMYNDARKEIQGNAIPRDLFSAEGAETVFVALNKSKEPLRSFLIRNTPKSQIQSFYKIS 211

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
             +            ++ I+IP+F++ +++ +FEIG LI LPF +ID++ A +++AM MM
Sbjct: 212 QKTFPPEIREHMTASDFVIVIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQMM 271

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ML P SISLP K++  V++DGW+LL++ L+ SF
Sbjct: 272 MLSPLSISLPLKLLLVVMVDGWTLLLQGLMISF 304


>gi|53722431|ref|YP_111416.1| type III secretion system protein [Burkholderia pseudomallei
           K96243]
 gi|76818756|ref|YP_335589.1| type III secretion system protein [Burkholderia pseudomallei 1710b]
 gi|126444935|ref|YP_001062995.1| type III secretion system protein [Burkholderia pseudomallei 668]
 gi|126456985|ref|YP_001075942.1| type III secretion system protein [Burkholderia pseudomallei 1106a]
 gi|134282501|ref|ZP_01769205.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 305]
 gi|167724022|ref|ZP_02407258.1| type III secretion system protein [Burkholderia pseudomallei DM98]
 gi|167742991|ref|ZP_02415765.1| type III secretion system protein [Burkholderia pseudomallei 14]
 gi|167820162|ref|ZP_02451842.1| type III secretion system protein [Burkholderia pseudomallei 91]
 gi|167828537|ref|ZP_02460008.1| type III secretion system protein [Burkholderia pseudomallei 9]
 gi|167849995|ref|ZP_02475503.1| type III secretion system protein [Burkholderia pseudomallei B7210]
 gi|167898604|ref|ZP_02486005.1| type III secretion system protein [Burkholderia pseudomallei 7894]
 gi|167906946|ref|ZP_02494151.1| type III secretion system protein [Burkholderia pseudomallei NCTC
           13177]
 gi|167915305|ref|ZP_02502396.1| type III secretion system protein [Burkholderia pseudomallei 112]
 gi|167923138|ref|ZP_02510229.1| type III secretion system protein [Burkholderia pseudomallei
           BCC215]
 gi|217425350|ref|ZP_03456844.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 576]
 gi|226199064|ref|ZP_03794626.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei Pakistan 9]
 gi|237510373|ref|ZP_04523088.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei MSHR346]
 gi|242313556|ref|ZP_04812573.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 1106b]
 gi|254183805|ref|ZP_04890397.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 1655]
 gi|254186719|ref|ZP_04893235.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254194021|ref|ZP_04900453.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei S13]
 gi|254264816|ref|ZP_04955681.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 1710a]
 gi|254301600|ref|ZP_04969044.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 406e]
 gi|4206078|gb|AAD11411.1| SctR [Burkholderia pseudomallei]
 gi|52212845|emb|CAH38879.1| putative type III secretion-associated protein [Burkholderia
           pseudomallei K96243]
 gi|76583229|gb|ABA52703.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 1710b]
 gi|126224426|gb|ABN87931.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 668]
 gi|126230753|gb|ABN94166.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 1106a]
 gi|134246058|gb|EBA46148.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 305]
 gi|157810966|gb|EDO88136.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 406e]
 gi|157934403|gb|EDO90073.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|169650772|gb|EDS83465.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei S13]
 gi|184214338|gb|EDU11381.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 1655]
 gi|217391601|gb|EEC31629.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 576]
 gi|225928839|gb|EEH24864.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei Pakistan 9]
 gi|235002578|gb|EEP52002.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei MSHR346]
 gi|242136795|gb|EES23198.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 1106b]
 gi|254215818|gb|EET05203.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 1710a]
          Length = 216

 Score =  172 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 125/206 (60%), Gaps = 2/206 (0%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
              +   +S+ P + ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ ++ YVM+P
Sbjct: 10  LLLVVIAISLLPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYVMAP 69

Query: 102 TLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
              ++ +   +  + +Q ++    A+    EPF  F+  +T E++   F+  A       
Sbjct: 70  IGMQAAKALDEQQLASQSSQAIIQALGSAREPFRSFLEKHTPEREKRFFIRSASVIWPKE 129

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           + +  +  +  +L P+F +SEL  +F+IGFL+ + F+I+D+++A +++A+G+  + PT++
Sbjct: 130 EASLLNERDLIVLAPAFALSELTDAFKIGFLLYIVFIIVDLVIANVLLALGLNQITPTNV 189

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++PFK++ FV +DGWS L+  LV ++
Sbjct: 190 AIPFKLLLFVAMDGWSTLIHGLVMTY 215


>gi|84514806|ref|ZP_01002169.1| Flagellar transport protein FliP [Loktanella vestfoldensis SKA53]
 gi|84510965|gb|EAQ07419.1| Flagellar transport protein FliP [Loktanella vestfoldensis SKA53]
          Length = 252

 Score =  172 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 88/247 (35%), Positives = 150/247 (60%), Gaps = 8/247 (3%)

Query: 4   YCFFALFLVTPELVFAKSSLH----DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           +    L  +     FA+        +V+      +  +  ++   + T+L+I P  L+ +
Sbjct: 9   FGIIFLCSIPLGGAFAQVGGGLPALNVLVGNDGGTTYSLSLQILALMTVLTILPSFLLGI 68

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R II+ SILR  MG    PPN V+IS+ALF+TFYVM+PT +      I P +  ++
Sbjct: 69  TAFTRIIIILSILRQAMGTQQTPPNQVLISIALFLTFYVMAPTFEEIYSTTISPYLAGEL 128

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           +   AI+  A     F+  NTRE +L++F +MA     +     N+ + Y +L+P+F+ S
Sbjct: 129 SAVAAIEGSANIMRGFLILNTREAELAMFAEMAG----DAPYASNEDVPYAVLLPAFITS 184

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL+ +F+IGFL+ LPFL+ID+++A+I+M++GMMML P  ++LPFK++ FVL+DGW++ + 
Sbjct: 185 ELKTAFQIGFLLFLPFLVIDLVIASILMSLGMMMLSPMLVALPFKLLLFVLVDGWAMTIG 244

Query: 240 NLVKSFI 246
           ++  +++
Sbjct: 245 SIASTYV 251


>gi|171915734|ref|ZP_02931204.1| type III secretion system protein [Verrucomicrobium spinosum DSM
           4136]
          Length = 222

 Score =  172 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 71/208 (34%), Positives = 131/208 (62%), Gaps = 2/208 (0%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +    + ++L++ P L +MVT + + ++V S++R  +G+  +PPN+V+  +A+ +T Y+M
Sbjct: 10  LTLIVLASVLALIPFLAVMVTSYVKLVVVLSLVRNALGVQQIPPNMVLNGIAVILTIYIM 69

Query: 100 SPTLDRSIEMGIQPLMNN--QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
           +P   ++     +  + N    +    + R + P   F+  +T +++ + F+D A     
Sbjct: 70  APIGQQTFANLEKEDLKNLSVESIKGIMDRSSTPIRKFLAYHTADREKAFFLDTARRLWG 129

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
           +    K D  ++ +LIP+F +SEL  +F+IGFL+ LPF+ ID+IV+ I++AMGMMM+ P 
Sbjct: 130 DKAQVKIDKDDFFVLIPAFTVSELTAAFQIGFLLYLPFIAIDLIVSNILLAMGMMMVSPM 189

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +ISLPFK++ FVL+DGW+ L+  LV ++
Sbjct: 190 TISLPFKLLLFVLVDGWARLIHGLVITY 217


>gi|166712022|ref|ZP_02243229.1| flagellar biosynthesis protein FliP [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 281

 Score =  172 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 88/224 (39%), Positives = 132/224 (58%), Gaps = 4/224 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           SL +V          +  ++T  + T +++ P +L+++T F R  IV  +LR  +G G  
Sbjct: 59  SLPNVSVGRIGDQPVSLPLQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQT 118

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           P N V++ L++F+T  VM P   +    G+QP +NNQI  +TA     +P   FM    R
Sbjct: 119 PSNQVLLGLSMFLTALVMMPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIR 178

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           E DL  F  MA            D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++
Sbjct: 179 ETDLMTFAGMAGDGK----YVGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLV 234

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           VA+++M+MGMMML P  IS PFK++ F+L+DGW L+V  L  SF
Sbjct: 235 VASVLMSMGMMMLSPMLISAPFKILLFILVDGWVLVVGTLAASF 278


>gi|58582234|ref|YP_201250.1| flagellar biosynthesis protein FliP [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84624127|ref|YP_451499.1| flagellar biosynthesis protein FliP [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|58426828|gb|AAW75865.1| flagellar biosynthetic protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84368067|dbj|BAE69225.1| flagellar biosynthetic protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 281

 Score =  172 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 88/224 (39%), Positives = 132/224 (58%), Gaps = 4/224 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           SL +V          +  ++T  + T +++ P +L+++T F R  IV  +LR  +G G  
Sbjct: 59  SLPNVSVGRIGDQPVSLPLQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQT 118

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           P N V++ L++F+T  VM P   +    G+QP +NNQI  +TA     +P   FM    R
Sbjct: 119 PSNQVLLGLSMFLTALVMMPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIR 178

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           E DL  F  MA            D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++
Sbjct: 179 ETDLMTFAGMAGDGK----YVGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLV 234

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           VA+++M+MGMMML P  IS PFK++ F+L+DGW L+V  L  SF
Sbjct: 235 VASVLMSMGMMMLSPMLISAPFKILLFILVDGWVLVVGTLAASF 278


>gi|1185059|gb|AAB58968.1| flagellar export protein [Borrelia burgdorferi]
          Length = 254

 Score =  172 bits (436), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 81/258 (31%), Positives = 137/258 (53%), Gaps = 16/258 (6%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNI---------PADLSISTWIVRTFGIFTILSI 51
           M +   F LF     L FA++      N              S   + ++   + TI+++
Sbjct: 1   MRKCFNFFLFFSVTSLSFAQTKSLQTTNGLNFPFLNFDSIGGSEIAFSLQLLILLTIITL 60

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           +P  L+++T F R  IV   +R  + +   PP  +++ LALF+T + M PT +   E   
Sbjct: 61  SPAFLVLMTSFLRISIVLDFIRRALSLQQSPPTQIVMGLALFLTIFTMWPTFNSIYEQAY 120

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNT---REKDLSLFMDMAHSSHRNTDITKNDHIE 168
            PL  ++I       +   P  +FM       R +++ L M M++             + 
Sbjct: 121 LPLKESKINFNEFYNKGIAPLRIFMYKQMSDGRHEEIRLLMSMSNYDRPK----NFSEVP 176

Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
             +LI +F++ EL+ +F++G LI LPF+++D+IVA+++MAMGM+MLPP  ISL FK+I F
Sbjct: 177 SHVLIAAFILHELKVAFKMGILIFLPFIVLDIIVASVLMAMGMIMLPPVMISLHFKLILF 236

Query: 229 VLIDGWSLLVENLVKSFI 246
           V++DGW+L+   L+KSF+
Sbjct: 237 VMVDGWTLITSGLIKSFM 254


>gi|310816848|ref|YP_003964812.1| flagellar biosynthesis protein FliP [Ketogulonicigenium vulgare
           Y25]
 gi|308755583|gb|ADO43512.1| flagellar biosynthesis protein FliP [Ketogulonicigenium vulgare
           Y25]
          Length = 244

 Score =  172 bits (436), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 91/239 (38%), Positives = 139/239 (58%), Gaps = 4/239 (1%)

Query: 7   FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
            AL L+          +  +     + S++   V+   + T++S+ P L IM T FP  +
Sbjct: 9   VALTLLAGAAGAQGVDIQSLGLDFGEGSVAGRSVQLLVMVTLISLVPALAIMFTSFPFMV 68

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
            V SILR G+G    PPN++I++LALF+T+YVM+P  D +   GI PL+ +++    A++
Sbjct: 69  TVLSILRQGLGTQQSPPNMLIVTLALFLTWYVMAPVFDEAWANGIAPLLEDRLPVDAALR 128

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
               PF  FM              +      +T            L+PSF++SEL R+F+
Sbjct: 129 AAMAPFQTFMSGRVDPTTYQTMASL----RPDTVGVAVTDAPLSTLVPSFLLSELSRAFQ 184

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGFLI LPFLIID++VA ++M+MGMMM+PP  ++LPFK+ FFV+ DGWSLL  +LV+++
Sbjct: 185 IGFLIFLPFLIIDLVVAAVLMSMGMMMVPPAVVALPFKLAFFVVADGWSLLASSLVRNY 243


>gi|218892351|ref|YP_002441218.1| type III secretion system protein [Pseudomonas aeruginosa LESB58]
 gi|218772577|emb|CAW28360.1| translocation protein in type III secretion [Pseudomonas aeruginosa
           LESB58]
          Length = 217

 Score =  172 bits (436), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 70/191 (36%), Positives = 115/191 (60%), Gaps = 2/191 (1%)

Query: 57  IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT--LDRSIEMGIQPL 114
           +M T F +  +VFS+LR  +G+  +PPN+ +  LA+ ++ YVM+P     R         
Sbjct: 25  VMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLRNHDVS 84

Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
           +++  +    +     P+  F++   +E++ + FM+       +    + D     IL+P
Sbjct: 85  LSDSASVERFLDEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAERLDPDSLLILLP 144

Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234
           +F +SEL R+FEIGFLI LPF+ ID+I++ I++AMGMMM+ P +ISLPFK++ FVL+DGW
Sbjct: 145 AFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISLPFKLLLFVLLDGW 204

Query: 235 SLLVENLVKSF 245
           + L   LV S+
Sbjct: 205 ARLTHGLVISY 215


>gi|27550057|gb|AAO18040.1| LscR [Photorhabdus luminescens]
          Length = 217

 Score =  172 bits (436), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 69/191 (36%), Positives = 115/191 (60%), Gaps = 2/191 (1%)

Query: 57  IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT--LDRSIEMGIQPL 114
           +M T F +  +VFS+LR  +G+  +PPN+ +  LA+ +T YVM+P     +      +  
Sbjct: 25  VMATSFLKLAVVFSLLRNALGVQQIPPNMAMYGLAIILTIYVMAPVGFATQDYLRQNEVS 84

Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
            +N  +    ++    P+  F++ + +  + + F+D       +    + +     IL+P
Sbjct: 85  FSNAQSVEKFVEEGLTPYRNFLKQHIKPSERTFFIDSTRQIWPSQYADRLEPDSLLILLP 144

Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234
           SF +SEL R+FEIGFL+ LPF+ ID+I++ I++AMGMMM+ P +ISLPFK++ FVL+DGW
Sbjct: 145 SFTVSELTRAFEIGFLLYLPFIAIDLIISNILLAMGMMMVSPMTISLPFKLLLFVLLDGW 204

Query: 235 SLLVENLVKSF 245
           + L   LV S+
Sbjct: 205 TRLTHGLVISY 215


>gi|15835465|ref|NP_297224.1| type III secretion system protein [Chlamydia muridarum Nigg]
 gi|270289654|ref|ZP_06195956.1| type III secretion system protein [Chlamydia muridarum Weiss]
 gi|301337041|ref|ZP_07225243.1| type III secretion system protein [Chlamydia muridarum MopnTet14]
 gi|8163334|gb|AAF73610.1| type III secretion inner membrane protein SctR [Chlamydia muridarum
           Nigg]
          Length = 311

 Score =  172 bits (435), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 67/213 (31%), Positives = 122/213 (57%), Gaps = 11/213 (5%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            I   L+++P L++++T + + II   +LR  +G+   PP+ V+  +AL ++ YVM PT 
Sbjct: 98  VIILFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTG 157

Query: 104 DRSIEMGIQPLMNNQI-----------TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
                   + + ++ +           T   A+ +  EP   F+ NNT +  +  F  ++
Sbjct: 158 MAMYNDAKKGIESDAVPRDLFSAEGAETVFVALNKSKEPLRSFLINNTPKPQIQSFYKIS 217

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
             +       +    ++ ++IP+F++ +++ +FEIG LI LPF +ID++ A +++AM MM
Sbjct: 218 QKTFPPELRQQLTPSDFVVVIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQMM 277

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ML P SISLP K++  V++DGW+LL+E L+ SF
Sbjct: 278 MLSPLSISLPLKLLLVVMVDGWTLLLEGLMISF 310


>gi|289666110|ref|ZP_06487691.1| flagellar biosynthesis protein FliP [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 281

 Score =  172 bits (435), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 88/224 (39%), Positives = 132/224 (58%), Gaps = 4/224 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           SL +V          +  ++T  + T +++ P +L+++T F R  IV  +LR  +G G  
Sbjct: 59  SLPNVSVGRIGDQPVSLPLQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQT 118

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           P N V++ L++F+T  VM P   +    G+QP +NNQI  +TA     +P   FM    R
Sbjct: 119 PSNQVLLGLSMFLTALVMMPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIR 178

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           E DL  F  MA            D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++
Sbjct: 179 ETDLMTFAGMAGDGK----YAGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLV 234

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           VA+++M+MGMMML P  IS PFK++ F+L+DGW L+V  L  SF
Sbjct: 235 VASVLMSMGMMMLSPMLISAPFKILLFILVDGWVLVVGTLAASF 278


>gi|21231364|ref|NP_637281.1| flagellar biosynthesis protein FliP [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66768583|ref|YP_243345.1| flagellar biosynthesis protein FliP [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21113027|gb|AAM41205.1| flagellar biosynthetic protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573915|gb|AAY49325.1| flagellar biosynthetic protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 280

 Score =  172 bits (435), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 88/224 (39%), Positives = 132/224 (58%), Gaps = 4/224 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           +L +V          +  ++T  + T +++ P +L+++T F R  IV  +LR  +G G  
Sbjct: 58  TLPNVSVGRIGDQPVSLPLQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQT 117

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           P N V++ LA+F+T  VM P   +    G+QP +NNQI  +TA     +P   FM    R
Sbjct: 118 PSNQVLLGLAMFLTALVMMPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIR 177

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           E DL  F  MA            D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++
Sbjct: 178 ETDLMTFAGMAGDGK----YAGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLV 233

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           VA+++M+MGMMML P  IS PFK++ F+L+DGW L+V  L  SF
Sbjct: 234 VASVLMSMGMMMLSPMLISAPFKILLFILVDGWVLVVGTLAASF 277


>gi|37527633|ref|NP_930977.1| type III secretion system protein [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787068|emb|CAE16143.1| Type III secretion component protein SctR [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 217

 Score =  172 bits (435), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 68/191 (35%), Positives = 115/191 (60%), Gaps = 2/191 (1%)

Query: 57  IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT--LDRSIEMGIQPL 114
           +M T F +  +VFS+LR  +G+  +PPN+ +  LA+ +T YVM+P     +      +  
Sbjct: 25  VMATSFLKLAVVFSLLRNALGVQQIPPNMAMYGLAIILTIYVMAPVGFATQDYLRQNEVS 84

Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
            +N  +    ++    P+  F++ + +  + + F+D       +    + +     IL+P
Sbjct: 85  FSNAQSVDKFVEEGLTPYRNFLKQHIKPSERTFFIDSTRQIWPSQYADRLEPDSLLILLP 144

Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234
           +F +SEL R+FEIGFL+ LPF+ ID+I++ I++AMGMMM+ P +ISLPFK++ FVL+DGW
Sbjct: 145 AFTVSELTRAFEIGFLLYLPFIAIDLIISNILLAMGMMMVSPMTISLPFKLLLFVLLDGW 204

Query: 235 SLLVENLVKSF 245
           + L   LV S+
Sbjct: 205 TRLTHGLVISY 215


>gi|300936103|ref|ZP_07151044.1| flagellar biosynthetic protein FliP [Escherichia coli MS 21-1]
 gi|300458752|gb|EFK22245.1| flagellar biosynthetic protein FliP [Escherichia coli MS 21-1]
          Length = 194

 Score =  172 bits (435), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 81/189 (42%), Positives = 121/189 (64%), Gaps = 6/189 (3%)

Query: 56  LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115
           ++M+TCF RFIIV S+LR  +G+   PPN ++I +AL +T  VM P      +  + P  
Sbjct: 5   VLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTLLVMRPIWLNIYDHAVVPFE 64

Query: 116 NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPS 175
           N+QIT T A+   A P   FM   T +K ++  M +  +     D       +  I++P+
Sbjct: 65  NDQITLTDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKGNAADQ------DLSIVVPA 118

Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235
           +++SEL+ +F+IGF+I +PFL+ID+IVA+++MAMGMMML P  +SLPFK++ FVLIDGWS
Sbjct: 119 YVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWS 178

Query: 236 LLVENLVKS 244
           L +  L  S
Sbjct: 179 LTIGTLTTS 187


>gi|188576794|ref|YP_001913723.1| flagellar biosynthesis protein FliP [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188576986|ref|YP_001913915.1| flagellar biosynthesis protein FliP [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188521246|gb|ACD59191.1| flagellar biosynthetic protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188521438|gb|ACD59383.1| flagellar biosynthetic protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 281

 Score =  172 bits (435), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 88/224 (39%), Positives = 132/224 (58%), Gaps = 4/224 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           SL +V          +  ++T  + T +++ P +L+++T F R  IV  +LR  +G G  
Sbjct: 59  SLPNVSVGRIGDQPVSLPLQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQT 118

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           P N V++ L++F+T  VM P   +    G+QP +NNQI  +TA     +P   FM    R
Sbjct: 119 PSNQVLLGLSMFLTALVMMPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIR 178

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           E DL  F  MA            D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++
Sbjct: 179 ETDLMTFAGMAGDGK----YVGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLV 234

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           VA+++M+MGMMML P  IS PFK++ F+L+DGW L+V  L  SF
Sbjct: 235 VASVLMSMGMMMLSPMLISAPFKILLFILVDGWVLVVGTLAASF 278


>gi|108758905|ref|YP_633786.1| type III secretion system protein [Myxococcus xanthus DK 1622]
 gi|108462785|gb|ABF87970.1| type III secretion apparatus protein YscR/HrcR [Myxococcus xanthus
           DK 1622]
          Length = 218

 Score =  172 bits (435), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 69/217 (31%), Positives = 128/217 (58%), Gaps = 4/217 (1%)

Query: 33  LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
           +S +   +   G+  ++S+ P  ++M+T F +  +V S+ R+ MG    PP +V+  LA 
Sbjct: 1   MSYAGSPLSMMGMLAVMSLLPFAVLMLTSFSKIAVVLSLARSAMGTQQAPPTIVLTGLAA 60

Query: 93  FMTFYVMSPTLDRSIEMGIQPLMN----NQITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
            +T ++M+P ++R  + G          +     +A  RV+EP   F+  +   ++ + F
Sbjct: 61  VLTGHIMAPVMERMYDAGQVAYAEVASGSGAEMLSAASRVSEPLRAFLIKHGSAEERARF 120

Query: 149 MDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMA 208
           +D+A       ++      +  I+IP+F+I+EL+ +F+IGFL+ LPFL++DM++A +++A
Sbjct: 121 VDLARELRPVEEMDAVRETDLFIVIPAFVITELKEAFQIGFLVFLPFLVLDMVIANVLLA 180

Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +GM  L P+ +SLPFK++ FV +DGWSLL   L+  +
Sbjct: 181 LGMQTLSPSQVSLPFKILLFVAVDGWSLLARGLILGY 217


>gi|256370973|ref|YP_003108797.1| flagellar biosynthetic protein FliP [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256007557|gb|ACU53124.1| flagellar biosynthetic protein FliP [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 229

 Score =  172 bits (435), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 85/230 (36%), Positives = 139/230 (60%), Gaps = 5/230 (2%)

Query: 15  ELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRT 74
            L+ A +SL          S  T  V      T+LS+AP LL++ T F   ++V SI R 
Sbjct: 3   GLLLAATSLPSATLTVHAGSTPTASVVIILALTVLSLAPTLLVLFTGFVEIVVVLSITRN 62

Query: 75  GMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134
            +G+ + PPN V+  LALF++ +VM+PTL       + P ++  I+   A+ R   P  +
Sbjct: 63  ALGLSTTPPNQVLAGLALFLSLFVMAPTLGIVEHQAVLPYLHGHISAVVALDRAEGPIKL 122

Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
           +M  +TR ++L+LF  + H +         D +     +P+F++SEL  +F +GF+I +P
Sbjct: 123 WMLRHTRTQELALFDVVTHHAGVAPAAAPLDAV-----VPAFILSELHSAFVMGFIIYVP 177

Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           FL+ID++V++++M++GMMMLPPT +SLPFK++ FVL+DGW+L+   L+ S
Sbjct: 178 FLVIDLVVSSVLMSLGMMMLPPTLVSLPFKLLLFVLVDGWTLVAHALLVS 227


>gi|150260681|ref|ZP_01917409.1| putative type III secretion apparatus protein [Yersinia pestis
           CA88-4125]
 gi|153950632|ref|YP_001402768.1| type III secretion system protein [Yersinia pseudotuberculosis IP
           31758]
 gi|162418478|ref|YP_001608228.1| type III secretion system protein [Yersinia pestis Angola]
 gi|165926714|ref|ZP_02222546.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|166010511|ref|ZP_02231409.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166213909|ref|ZP_02239944.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167402211|ref|ZP_02307684.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167419036|ref|ZP_02310789.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167426164|ref|ZP_02317917.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|218927477|ref|YP_002345352.1| type III secretion system protein [Yersinia pestis CO92]
 gi|229836525|ref|ZP_04456691.1| putative type III secretion apparatus protein [Yersinia pestis
           Pestoides A]
 gi|229840133|ref|ZP_04460292.1| putative type III secretion apparatus protein [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229842214|ref|ZP_04462369.1| putative type III secretion apparatus protein [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229904047|ref|ZP_04519160.1| putative type III secretion apparatus protein [Yersinia pestis
           Nepal516]
 gi|294502343|ref|YP_003566405.1| putative type III secretion apparatus protein [Yersinia pestis
           Z176003]
 gi|51587964|emb|CAH19567.1| putative type III secretion apparatus protein, YscR/EscR [Yersinia
           pseudotuberculosis IP 32953]
 gi|115346088|emb|CAL18956.1| putative type III secretion apparatus protein [Yersinia pestis
           CO92]
 gi|149290089|gb|EDM40166.1| putative type III secretion apparatus protein [Yersinia pestis
           CA88-4125]
 gi|152962127|gb|ABS49588.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
           pseudotuberculosis IP 31758]
 gi|162351293|gb|ABX85241.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
           pestis Angola]
 gi|165921337|gb|EDR38561.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165990601|gb|EDR42902.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166204884|gb|EDR49364.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166963030|gb|EDR59051.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167048392|gb|EDR59800.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167054875|gb|EDR64677.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|229679817|gb|EEO75920.1| putative type III secretion apparatus protein [Yersinia pestis
           Nepal516]
 gi|229690524|gb|EEO82578.1| putative type III secretion apparatus protein [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229696499|gb|EEO86546.1| putative type III secretion apparatus protein [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229706209|gb|EEO92217.1| putative type III secretion apparatus protein [Yersinia pestis
           Pestoides A]
 gi|262360423|gb|ACY57144.1| putative type III secretion apparatus protein [Yersinia pestis
           D106004]
 gi|262364373|gb|ACY60930.1| putative type III secretion apparatus protein [Yersinia pestis
           D182038]
 gi|294352802|gb|ADE63143.1| putative type III secretion apparatus protein [Yersinia pestis
           Z176003]
          Length = 216

 Score =  172 bits (435), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 74/208 (35%), Positives = 123/208 (59%), Gaps = 2/208 (0%)

Query: 41  RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100
           +   +  +LS+ P+L++M T F +  +VFS+LR  +G+  VPPN+ I  LAL +T ++M+
Sbjct: 9   QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA 68

Query: 101 PTLDRSIEMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
           P             ++N I        Q    P+  F++ NT  + ++ F D+  +    
Sbjct: 69  PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE 128

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
                       IL+P+F +S+L  +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +
Sbjct: 129 RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT 188

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +SLPFK++ FVL+DGWSL++  LV S++
Sbjct: 189 LSLPFKLLVFVLVDGWSLVLGQLVGSYL 216


>gi|291086629|ref|ZP_06356304.2| type III secretion apparatus protein, YscR/HrcR family [Citrobacter
           youngae ATCC 29220]
 gi|291067492|gb|EFE05601.1| type III secretion apparatus protein, YscR/HrcR family [Citrobacter
           youngae ATCC 29220]
          Length = 218

 Score =  171 bits (434), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 124/206 (60%), Gaps = 2/206 (0%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
              +   LS+ P +++  T F +  IVFS+LR  +G+  +PPN+ I  LAL ++ ++M+P
Sbjct: 13  LIILLVALSVLPFIVVSCTSFIKLAIVFSLLRNALGIQQIPPNMSIYGLALILSLFIMAP 72

Query: 102 TLDRSIEMGIQ-PLMNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
              +  +   + P+  N +     +     +P+ VF++ NT+EK +  F  + H +    
Sbjct: 73  VGMQINDNVQKEPISFNDVNLYERLDNSVLQPYLVFLQRNTKEKQIRYFSRIGHQTWPKK 132

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
              + +     +++P+F I++L  +F+IG LI LPF+ ID+IV+ I++AMGMMM+ PT+I
Sbjct: 133 YQERLNKNSLFVMLPAFGITQLDEAFKIGLLIYLPFIAIDLIVSNILLAMGMMMVSPTTI 192

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ F++  GW  L+E LV SF
Sbjct: 193 SLPFKIMLFIIAGGWQFLIEKLVLSF 218


>gi|312602787|ref|YP_004022632.1| type III secretion inner membrane protein SctR [Burkholderia
           rhizoxinica HKI 454]
 gi|306431590|emb|CBK52142.1| type III secretion inner membrane protein SctR [Burkholderia
           rhizoxinica HKI 454]
 gi|312170101|emb|CBW77113.1| type III secretion inner membrane protein SctR [Burkholderia
           rhizoxinica HKI 454]
          Length = 230

 Score =  171 bits (434), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 58/211 (27%), Positives = 122/211 (57%), Gaps = 2/211 (0%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           + +     I   +S+ P++ +++T + + ++V S+LR  +G   VPPN+V+  +A+ ++ 
Sbjct: 19  SELTSLMLIVLAISVVPLVAVVITSYTKIVVVLSLLRNALGAQQVPPNMVLNGIAILVSL 78

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
           Y+M+P    + +           +++   A     EPF  F++ +  +++   FM  A  
Sbjct: 79  YIMAPIGMAAAKQLENQPNAGTPSQSVVQAFSAAQEPFRAFLKQHANKREKRFFMRTATV 138

Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
                        ++ +L P+F +SEL  +F+IGFL+ + F++ID+I+A +++AMG+  +
Sbjct: 139 IWPKEVADGLREDDFIVLAPAFTLSELTDAFKIGFLLYITFVVIDLIIANVLLAMGLNQV 198

Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            PT++++PFK++ FV++DGWS L+  L+ ++
Sbjct: 199 MPTNVAIPFKLLLFVVMDGWSTLIHGLILTY 229


>gi|89897883|ref|YP_514993.1| type III secretion system protein [Chlamydophila felis Fe/C-56]
 gi|89331255|dbj|BAE80848.1| type III secretion flagellar biosynthesis inner membrane protein
           [Chlamydophila felis Fe/C-56]
          Length = 305

 Score =  171 bits (434), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 67/213 (31%), Positives = 119/213 (55%), Gaps = 11/213 (5%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            I   L+++P L++++T + + II   +LR  +G+   PP+ V+  +AL ++ YVM PT 
Sbjct: 92  IILIFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTG 151

Query: 104 DRSIEMGIQPLMNNQI-----------TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
                   + +  N I           T   A+ +  EP   F+  NT +  +  F  ++
Sbjct: 152 VAMYNDARKEIQGNAIPRDLFSAEGAETVFVALNKSKEPLRSFLIRNTPKSQIQSFYKIS 211

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
             +            ++ I++P+F++ +++ +FEIG LI LPF +ID++ A +++AM MM
Sbjct: 212 QKTFPPEIREHLTVSDFVIIVPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQMM 271

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ML P SISLP K++  V++DGW+LL++ L+ SF
Sbjct: 272 MLSPLSISLPLKLLLVVMVDGWTLLLQGLMISF 304


>gi|10955564|ref|NP_052405.1| type III secretion system protein [Yersinia enterocolitica]
 gi|28373022|ref|NP_783679.1| type III secretion system protein [Yersinia enterocolitica]
 gi|32470292|ref|NP_863527.1| type III secretion system protein [Yersinia enterocolitica]
 gi|122815816|ref|YP_001004082.1| type III secretion system protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|332163586|ref|YP_004424928.1| type III secretion system protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|14579350|gb|AAK69227.1|AF336309_22 YscR [Yersinia enterocolitica]
 gi|4324351|gb|AAD16828.1| YscR [Yersinia enterocolitica W22703]
 gi|23630594|gb|AAN37550.1| YscR [Yersinia enterocolitica]
 gi|121663690|emb|CAL10052.1| putative type III secretion protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|310923235|emb|CBW54701.1| YscR, T3SS component [Yersinia enterocolitica (type O:8)]
 gi|318608197|emb|CBY78171.1| type III secretion inner membrane protein
           (YscR,SpaR,HrcR,EscR,homologous to flagellar export
           components) [Yersinia enterocolitica subsp. palearctica
           Y11]
 gi|325667816|gb|ADZ44459.1| type III secretion system protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 217

 Score =  171 bits (434), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 69/191 (36%), Positives = 116/191 (60%), Gaps = 2/191 (1%)

Query: 57  IMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT--LDRSIEMGIQPL 114
           +M T F +F +VFS+LR  +G+  +PPN+ +  LA+ ++ YVM+P     +      +  
Sbjct: 25  VMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATQDYLQANEVS 84

Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
           + N  +          P+ +F++ + + ++ S F+D            + +     IL+P
Sbjct: 85  LTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWPKQYADRLESDSLFILLP 144

Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234
           +F +SEL R+FEIGFLI LPF++ID++++ I++AMGMMM+ P +ISLPFK++ FVL+DGW
Sbjct: 145 AFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPMTISLPFKLLLFVLLDGW 204

Query: 235 SLLVENLVKSF 245
           + L   LV S+
Sbjct: 205 TRLTHGLVISY 215


>gi|90415342|ref|ZP_01223276.1| Flagella transport protein FliP family protein [marine gamma
           proteobacterium HTCC2207]
 gi|90332665|gb|EAS47835.1| Flagella transport protein FliP family protein [marine gamma
           proteobacterium HTCC2207]
          Length = 256

 Score =  171 bits (434), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 89/221 (40%), Positives = 146/221 (66%), Gaps = 4/221 (1%)

Query: 25  DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
           ++++  +  +  +  ++   + ++L++ P LL+M+T F R IIVFS+LR  +G    PPN
Sbjct: 37  NMIDDGSGGTKYSLTLQLLALMSVLTLLPSLLLMMTSFVRIIIVFSLLRQALGTAQTPPN 96

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
            V++ LALF+T ++MSP L    +  I P    QI+  TA+     P   FM N TRE D
Sbjct: 97  QVLVGLALFLTLFIMSPVLTSVYDDAITPYFEEQISFETAVAAAEAPVRTFMLNQTRESD 156

Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
           + +F+++A     NT++ +   + +  L+P+F+ SEL+ +F IGFLI +PF+IID++VA+
Sbjct: 157 IGMFLEIAD----NTEVIEPADVPFLTLVPAFITSELKSAFSIGFLIYIPFVIIDLVVAS 212

Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++M+MGMMML P  IS+PFK++ FVL+DGW+L++ +L  SF
Sbjct: 213 VLMSMGMMMLSPMMISMPFKLMLFVLVDGWTLIMGSLTASF 253


>gi|307725660|ref|YP_003908873.1| Yop virulence translocation R [Burkholderia sp. CCGE1003]
 gi|307586185|gb|ADN59582.1| Yop virulence translocation R [Burkholderia sp. CCGE1003]
          Length = 216

 Score =  171 bits (433), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 123/206 (59%), Gaps = 2/206 (0%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
              +   +S+ P + ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ ++ YVM+P
Sbjct: 10  LLIVIVAISLVPFVAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGVAILVSIYVMAP 69

Query: 102 TLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
              ++++      +  Q T+          EPF  F++ +T E++   F+  A+      
Sbjct: 70  VGMQAMQSMQGQAIAGQPTQALIQVFSAAREPFRTFLQKHTNEREKRFFIRSANVVWPKE 129

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
             +     +  +L P+F ++EL  +F+IGFL+ + F++ID+I+A +++AMG+  + PT++
Sbjct: 130 AASSLHENDLIVLAPAFTLTELTDAFKIGFLLYIAFIVIDLIIANVLLAMGLNQVTPTNV 189

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++PFK++ FV++DGWS L+  LV ++
Sbjct: 190 AIPFKLLLFVVMDGWSTLIHGLVMTY 215


>gi|29840693|ref|NP_829799.1| type III secretion system protein [Chlamydophila caviae GPIC]
 gi|29835043|gb|AAP05677.1| type III secretion inner membrane protein SctR [Chlamydophila
           caviae GPIC]
          Length = 303

 Score =  171 bits (433), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 68/213 (31%), Positives = 119/213 (55%), Gaps = 11/213 (5%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            I   L+++P L++++T + + II   +LR  +G+   PP+ V+  +AL ++ YVM PT 
Sbjct: 90  IILIFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTG 149

Query: 104 DRSIEMGIQPLMNNQI-----------TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
                   + +  N I           T   A+ +  EP   F+  NT +  +  F  ++
Sbjct: 150 VAMYNDARKEIQGNAIPRDLFSAEGAETVFVALNKSKEPLRSFLIRNTPKAQIQSFYKIS 209

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
             +            ++ I+IP+F++ +++ +FEIG LI LPF +ID++ A +++AM MM
Sbjct: 210 QKTFPQEIREHMTASDFVIIIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQMM 269

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ML P SISLP K++  V++DGW+LL++ L+ SF
Sbjct: 270 MLSPLSISLPLKLLLVVMVDGWTLLLQGLMISF 302


>gi|238787477|ref|ZP_04631275.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia
           frederiksenii ATCC 33641]
 gi|238724264|gb|EEQ15906.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia
           frederiksenii ATCC 33641]
          Length = 216

 Score =  171 bits (433), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 76/193 (39%), Positives = 115/193 (59%), Gaps = 2/193 (1%)

Query: 56  LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRSIEMGIQPL 114
           ++M T F +  IVFS+LR  +G+  VPPN+ I  LAL +T ++M+P  LD    +  +PL
Sbjct: 24  MVMGTSFLKLSIVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVHARLQDEPL 83

Query: 115 MNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILI 173
            N        I   A  P+  F++ NT  +    F D+  +                IL+
Sbjct: 84  PNEIGPLLHHIDEHALGPYRDFLQRNTDAEQTHFFTDIVQTKWPERYRDTIKSNSLLILM 143

Query: 174 PSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDG 233
           P+F +S+L  +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK++ F+LIDG
Sbjct: 144 PAFTLSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMVSPITISLPFKLLIFILIDG 203

Query: 234 WSLLVENLVKSFI 246
           W LL+  LV S++
Sbjct: 204 WGLLLGQLVGSYL 216


>gi|325920564|ref|ZP_08182486.1| flagellar biosynthetic protein FliP [Xanthomonas gardneri ATCC
           19865]
 gi|325548957|gb|EGD19889.1| flagellar biosynthetic protein FliP [Xanthomonas gardneri ATCC
           19865]
          Length = 279

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 87/224 (38%), Positives = 131/224 (58%), Gaps = 4/224 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           SL +V          +  ++T  + T +++ P +L+++T F R  IV  +LR  +G G  
Sbjct: 57  SLPNVSVGRIGDQPVSLPLQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQT 116

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           P N V++ L++F+T  VM P   +    G+ P +NNQI  +TA     +P   FM    R
Sbjct: 117 PSNQVLLGLSMFLTALVMMPVWQKMWGAGLSPYLNNQIDFSTAWTLTTQPLRAFMLAQIR 176

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           E DL  F  MA            D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++
Sbjct: 177 ETDLMTFAGMAGDGK----YAGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLV 232

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           VA+++M+MGMMML P  IS PFK++ F+L+DGW L+V  L  SF
Sbjct: 233 VASVLMSMGMMMLSPMLISAPFKILLFILVDGWVLVVGTLAASF 276


>gi|323530325|ref|YP_004232477.1| Yop virulence translocation R [Burkholderia sp. CCGE1001]
 gi|323387327|gb|ADX59417.1| Yop virulence translocation R [Burkholderia sp. CCGE1001]
          Length = 216

 Score =  170 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 122/206 (59%), Gaps = 2/206 (0%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
              +   +S+ P + ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ ++ YVM+P
Sbjct: 10  LLIVIVAISLVPFVAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGVAILVSLYVMAP 69

Query: 102 TLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
              ++++      +  Q T+          EPF  F++ +T E++   F+  A+      
Sbjct: 70  VGMQAMQSMQGQAIAGQPTQALIQVFSAAREPFRTFLQKHTNEREKRFFIRSANVVWPKD 129

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                   +  +L P+F ++EL  +F+IGFL+ + F++ID+I+A +++AMG+  + PT++
Sbjct: 130 AAASLHENDLIVLAPAFTLTELTDAFKIGFLLYIAFIVIDLIIANVLLAMGLNQVTPTNV 189

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++PFK++ FV++DGWS L+  LV ++
Sbjct: 190 AIPFKLLLFVVMDGWSTLIHGLVMTY 215


>gi|16082732|ref|NP_395178.1| type III secretion system protein [Yersinia pestis CO92]
 gi|31795277|ref|NP_857738.1| type III secretion system protein [Yersinia pestis KIM]
 gi|31795479|ref|NP_857933.1| type III secretion system protein [Yersinia pestis KIM]
 gi|45478540|ref|NP_995367.1| type III secretion system protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51593913|ref|YP_068480.1| type III secretion system protein [Yersinia pseudotuberculosis IP
           32953]
 gi|108793660|ref|YP_636810.1| type III secretion system protein [Yersinia pestis Antiqua]
 gi|145597138|ref|YP_001154602.1| type III secretion system protein [Yersinia pestis Pestoides F]
 gi|149192695|ref|YP_001293927.1| type III secretion system protein [Yersinia pestis CA88-4125]
 gi|162417761|ref|YP_001604476.1| type III secretion system protein [Yersinia pestis Angola]
 gi|165927798|ref|ZP_02223630.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165940058|ref|ZP_02228592.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011710|ref|ZP_02232608.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166214467|ref|ZP_02240502.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401968|ref|ZP_02307454.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167422404|ref|ZP_02314157.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167422439|ref|ZP_02314192.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167422881|ref|ZP_02314634.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426865|ref|ZP_02318618.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|186897578|ref|YP_001874689.1| type III secretion system protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|229896860|ref|ZP_04512020.1| putative Yop secretion membrane protein [Yersinia pestis Pestoides
           A]
 gi|229900215|ref|ZP_04515351.1| putative Yop secretion membrane protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|294496839|ref|YP_003560536.1| needle complex export protein [Yersinia pestis Z176003]
 gi|322836570|ref|YP_004210066.1| type III secretion apparatus protein YscR [Yersinia pestis Java 9]
 gi|57015234|sp|P69980|YSCR_YERPE RecName: Full=Yop proteins translocation protein R
 gi|57015235|sp|P69981|YSCR_YERPS RecName: Full=Yop proteins translocation protein R
 gi|475123|gb|AAA27678.1| yscR [Yersinia pseudotuberculosis]
 gi|2465659|gb|AAB72201.1| YscR [Yersinia pestis]
 gi|2996237|gb|AAC62560.1| Yop proteins translocation protein R homolog [Yersinia pestis KIM
           10]
 gi|3822067|gb|AAC69787.1| type III secretion protein [Yersinia pestis KIM 10]
 gi|5832464|emb|CAB54921.1| putative Yop secretion membrane protein [Yersinia pestis CO92]
 gi|45357162|gb|AAS58558.1| putative Yop secretion membrane protein YscR [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51591610|emb|CAF25414.1| yscR; putative Yop secretion membrane protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|108782207|gb|ABG16262.1| Yop secretion membrane protein [Yersinia pestis Antiqua]
 gi|145212906|gb|ABP42312.1| Yop secretion membrane protein [Yersinia pestis Pestoides F]
 gi|148872353|gb|ABR14843.1| putative Yop secretion membrane protein [Yersinia pestis CA88-4125]
 gi|162354781|gb|ABX88728.1| type III secretion apparatus protein YscR [Yersinia pestis Angola]
 gi|165911968|gb|EDR30611.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165920234|gb|EDR37535.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989317|gb|EDR41618.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166204360|gb|EDR48840.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166958171|gb|EDR55192.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|166958641|gb|EDR55662.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|166958676|gb|EDR55697.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048696|gb|EDR60104.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167054164|gb|EDR63991.1| type III secretion apparatus protein YscR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|186700604|gb|ACC91232.1| Yop virulence translocation R [Yersinia pseudotuberculosis PB1/+]
 gi|229686735|gb|EEO78815.1| putative Yop secretion membrane protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229700131|gb|EEO88170.1| putative Yop secretion membrane protein [Yersinia pestis Pestoides
           A]
 gi|262363850|gb|ACY60570.1| needle complex export protein [Yersinia pestis D106004]
 gi|262364007|gb|ACY64344.1| needle complex export protein [Yersinia pestis D182038]
 gi|294352427|gb|ADE66484.1| needle complex export protein [Yersinia pestis Z176003]
 gi|317374480|gb|ADV16655.1| type III secretion inner membrane protein [Yersinia pestis]
 gi|321161344|gb|ADW67050.1| type III secretion apparatus protein YscR [Yersinia pestis Java 9]
          Length = 217

 Score =  170 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 71/208 (34%), Positives = 126/208 (60%), Gaps = 2/208 (0%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +    + ++L++ P++ +M T F +F +VFS+LR  +G+  +PPN+ +  LA+ ++ YVM
Sbjct: 8   INLIIVLSLLTLLPLISVMATSFVKFAVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVM 67

Query: 100 SPT--LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
           +P     +      +  + N  +          P+ +F++ + + ++ S F+D       
Sbjct: 68  APVGFATQDYLQANEVSLTNIESVEKFFDEGLAPYRMFLKQHIQAQEYSFFVDSTKQLWP 127

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
                + +     IL+P+F +SEL R+FEIGFLI LPF++ID++++ I++AMGMMM+ P 
Sbjct: 128 KQYADRLESDSLFILLPAFTVSELTRAFEIGFLIYLPFIVIDLVISNILLAMGMMMVSPM 187

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +ISLPFK++ FVL+DGW+ L   LV S+
Sbjct: 188 TISLPFKLLLFVLLDGWTRLTHGLVISY 215


>gi|238023706|ref|YP_002907938.1| type III secretion system protein [Burkholderia glumae BGR1]
 gi|237878371|gb|ACR30703.1| Type III secretion-associated protein [Burkholderia glumae BGR1]
          Length = 216

 Score =  170 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 123/206 (59%), Gaps = 2/206 (0%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
              +   +S+ P + ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ ++ YVM+P
Sbjct: 10  LLLVVIAISLLPFVAMVVTSYAKVVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYVMAP 69

Query: 102 TLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
              ++ +      + +Q ++    A     EPF  F+  +T+E++   F+  A       
Sbjct: 70  IGMQASKSLEGQQLASQPSQALIQAFGAAREPFRAFLEKHTQEREKRFFLRSAAVVWPKE 129

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
              +    +  +L PSF +SEL  +F+IGFL+ + F+++D+I+A +++A+G+  + PT++
Sbjct: 130 QAQQLSEHDLIVLAPSFTLSELTDAFKIGFLLYIAFIVVDLIIANVLLALGLNQVTPTNV 189

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++PFK++ FV++DGWS L+  LV ++
Sbjct: 190 AIPFKLLLFVVMDGWSTLIHGLVMTY 215


>gi|315126005|ref|YP_004068008.1| flagellar biosynthesis protein FliP [Pseudoalteromonas sp. SM9913]
 gi|315014519|gb|ADT67857.1| flagellar biosynthesis protein FliP [Pseudoalteromonas sp. SM9913]
          Length = 250

 Score =  170 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 82/245 (33%), Positives = 136/245 (55%), Gaps = 4/245 (1%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           + +     + L  P  + A+      +   AD    +  ++   + T+LS+ P LL+++T
Sbjct: 6   IFKVSLLLIMLFIPSWLNAEELTLFSLKDTADGQDYSVKLQILLLMTVLSLLPALLMVLT 65

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R IIV +ILR  MG+   PPN ++I ++L +T  +M P      +    P     I 
Sbjct: 66  SFTRIIIVLAILRQAMGLQQSPPNKILIGISLMLTMLIMRPVWQDIYQNAYTPFQQQTIG 125

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A+    +P   FM   TRE +L   + +A+           + I + +L+P+F++SE
Sbjct: 126 LEDALLTAEKPLRAFMLRQTRESELRQVLLIANEP----TTLTAEEIPFEVLMPAFVLSE 181

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L  +F+IGF++ +PFLIID++V++++M+MGMMML P  ISLPFK++ FVL DGWS++   
Sbjct: 182 LTTAFQIGFMLFIPFLIIDLVVSSVLMSMGMMMLSPLIISLPFKLMVFVLADGWSMIAGT 241

Query: 241 LVKSF 245
           L  +F
Sbjct: 242 LAATF 246


>gi|299069226|emb|CBJ40486.1| Hypersensitivity response secretion protein hrcR, type III
           secretion system [Ralstonia solanacearum CMR15]
          Length = 217

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 58/208 (27%), Positives = 119/208 (57%), Gaps = 4/208 (1%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
              +   +++ P   ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ ++ +VM+P
Sbjct: 9   LIVMAVAIALLPFAAMVVTSYTKIVVVLGLLRNALGVQQVPPNMVLNGIAMIVSCFVMAP 68

Query: 102 TLDRSIEMGIQPLMNNQITETTA----IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
               +++     L     T  T     +    +PF  F+  +T  ++ + FM  A     
Sbjct: 69  VGMEAMQRAHVQLNAQGGTTITQVMPLLDAARDPFREFLNKHTNPREKAFFMRSAQQLWP 128

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
                +    +  +L P+F ++EL  +F IGFL+ L F++ID+++A ++MA+G+  + P+
Sbjct: 129 PAKAAQLKDDDLIVLAPAFTLTELTSAFRIGFLLYLVFIVIDLVIANLLMALGLSQVTPS 188

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++++PFK++ FV++DGWS+LV  LV ++
Sbjct: 189 NVAIPFKLLLFVVMDGWSVLVHGLVNTY 216


>gi|320107033|ref|YP_004182623.1| flagellar biosynthetic protein FliP [Terriglobus saanensis SP1PR4]
 gi|319925554|gb|ADV82629.1| flagellar biosynthetic protein FliP [Terriglobus saanensis SP1PR4]
          Length = 271

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 71/193 (36%), Positives = 118/193 (61%), Gaps = 4/193 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P +++ +T   R ++VF  LR  +G  + P N V+++L L MT++++ P + +  +  I 
Sbjct: 83  PAIILAMTPMVRLLVVFHFLRQALGTQTAPSNQVLMALGLMMTWFLIQPVVVQIEQQAIA 142

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P     IT    + R + P   ++    REKDL+LF     S    T +     I  RI+
Sbjct: 143 PYRAETITLEECMDRTSVPIKQYLLKYAREKDLALFASAGMSIRPQTRL----DIPLRIV 198

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           IP++++SEL+  F+IG ++ LPFL+ID++VA+I  ++GM+ LPP  IS P K++ FV++D
Sbjct: 199 IPAYILSELKAGFQIGAVLFLPFLLIDLVVASITTSVGMLQLPPVVISTPIKILLFVMVD 258

Query: 233 GWSLLVENLVKSF 245
           GW+LL  +L+KSF
Sbjct: 259 GWNLLAGSLLKSF 271


>gi|94496750|ref|ZP_01303325.1| Type III secretory pathway, component EscR [Sphingomonas sp. SKA58]
 gi|94423763|gb|EAT08789.1| Type III secretory pathway, component EscR [Sphingomonas sp. SKA58]
          Length = 216

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 73/205 (35%), Positives = 127/205 (61%), Gaps = 1/205 (0%)

Query: 43  FGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT 102
             +  ++++AP   +MVT F + ++V S+LR  +G+  VPPN+V+  +AL ++ YVM PT
Sbjct: 12  LVVVVLIALAPFFAVMVTSFTKIVVVLSLLRNALGLQQVPPNVVLNGMALVLSVYVMYPT 71

Query: 103 LDRSIEMGIQPLMNNQITET-TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
           + +      Q  + +Q +E  +A  R  EP   F+  ++   + + F+       + +  
Sbjct: 72  MQQMAAASGQQAVPSQTSEIFSAADRAKEPLRAFLIKHSAADERAFFLRTQQRVAKQSGT 131

Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
                 ++ +++P+F++ EL  +F+IGFLI LPFL+ID++++ I++AMGMMML P +ISL
Sbjct: 132 QAASATDFIVVVPAFVVRELTVAFQIGFLIFLPFLVIDLVISNILLAMGMMMLSPVTISL 191

Query: 222 PFKVIFFVLIDGWSLLVENLVKSFI 246
           PFK++ FVL+DGW  L   LV S++
Sbjct: 192 PFKILLFVLVDGWVKLSHGLVLSYV 216


>gi|238764052|ref|ZP_04625007.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia
           kristensenii ATCC 33638]
 gi|238697723|gb|EEP90485.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia
           kristensenii ATCC 33638]
          Length = 216

 Score =  170 bits (431), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 81/208 (38%), Positives = 127/208 (61%), Gaps = 2/208 (0%)

Query: 41  RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100
           +   +  ILS+ P+L++M T F +  IVFS+LR  +G+  VPPN+ I  LAL +T ++M+
Sbjct: 9   QLIVLLFILSLLPLLVVMGTSFLKLSIVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA 68

Query: 101 PT-LDRSIEMGIQPLMNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
           P  LD    +  +PL N+       I   A  P+  F++ NT  + ++ F D+  +    
Sbjct: 69  PVGLDVHARLQDEPLPNDIGALLHHIDESALGPYRDFLQRNTDAEQVNFFNDIVKTKWPE 128

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
                       IL+P+F +S+L  +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +
Sbjct: 129 RYRDTIKPNSLLILMPAFTLSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMVSPIT 188

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           ISLPFK++ F+LIDGW LL+  LV S++
Sbjct: 189 ISLPFKLLIFILIDGWGLLLGQLVGSYL 216


>gi|114798811|ref|YP_758976.1| flagellar biosynthesis protein FliP [Hyphomonas neptunium ATCC
           15444]
 gi|114738985|gb|ABI77110.1| flagellar biosynthetic protein FliP [Hyphomonas neptunium ATCC
           15444]
          Length = 252

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 86/227 (37%), Positives = 144/227 (63%), Gaps = 5/227 (2%)

Query: 19  AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           A ++L  ++N   D  +S+ +V+   + T+LS+ P + +MVTC P  +IVFS +R  +G+
Sbjct: 29  APAALDGLLNPSGDGQLSSSVVQLVLLVTVLSLVPGIAMMVTCLPFMVIVFSFMRQAIGV 88

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
              PPN++I++LA+F+TF+VM P    + E GI P M+  + E  A     +PF  FM  
Sbjct: 89  QQAPPNMMIMALAMFLTFFVMEPVFMSAWENGISPYMDGVLDEQQAWALSTDPFRAFMMQ 148

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
            T  + L     +      N  + + +   + +L  +FM+SE++ +F+IGF+I LPF++I
Sbjct: 149 RTDPEAL-----LTLGDAVNRPVVEGEDPAFSLLATAFMLSEIKHAFQIGFVIFLPFMVI 203

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           D++VA+++MA+GMMM+PPT +SLPFK+ FFVL DGW  + E +++ +
Sbjct: 204 DLVVASVLMAVGMMMVPPTVVSLPFKLGFFVLADGWLKITEAVLRGY 250


>gi|315186373|gb|EFU20133.1| flagellar biosynthetic protein FliP [Spirochaeta thermophila DSM
           6578]
          Length = 258

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 74/197 (37%), Positives = 118/197 (59%), Gaps = 6/197 (3%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +L++ T F R  +V   +R  +G+  VPP  V++ ++LF+T +VM PT     +   
Sbjct: 66  APSILVLTTSFLRIALVLDFIRRALGLQQVPPTQVLMGISLFLTLFVMWPTFQEVYDDSF 125

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTRE--KDLSLFMDMAHSSHRNTDITKNDHIEY 169
            PL   +I    A  R   P  +FM    +   + + LFM M+     +T       +  
Sbjct: 126 VPLSRGEIDVEEAYGRAVGPLRIFMYRQMQNNVEPIRLFMRMSGLPRPDTLA----DVPT 181

Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
            ILIP+F++ EL  +F+IG ++ +PF+IIDM+VA+ +M+MGM+MLPP  IS PFK++ FV
Sbjct: 182 HILIPAFILHELTVAFKIGIILYIPFIIIDMVVASTLMSMGMIMLPPVMISFPFKLLLFV 241

Query: 230 LIDGWSLLVENLVKSFI 246
           L+DGW+L+ + L+ SF+
Sbjct: 242 LVDGWTLITQQLLGSFV 258


>gi|254255057|ref|ZP_04948374.1| Type III secretory pathway component EscR [Burkholderia dolosa
           AUO158]
 gi|124899702|gb|EAY71545.1| Type III secretory pathway component EscR [Burkholderia dolosa
           AUO158]
          Length = 278

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 61/212 (28%), Positives = 121/212 (57%), Gaps = 5/212 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +   G+   +S+ P +L   TC+ +F IVF I+R  +G+  VP NLV+ ++AL M+ +VM
Sbjct: 62  IAMIGLLAFVSLLPFVLAAGTCYLKFSIVFVIVRNAIGLQQVPSNLVLNAVALMMSIFVM 121

Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA---HS 154
            P      +  +   ++  ++ +    +      +  +++  +  +  + F  +      
Sbjct: 122 MPVGKAIYDQQLDNPVDFTSRESVQQFVDGGLGGYRQYLQRYSDPELTAFFQKIQVDRAV 181

Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
              +     ++      L+P++ +SE++ +F+IGF I LPF+I+D++V+++++A+GMMM+
Sbjct: 182 DADHAADASDEEPAIAALLPAYALSEIKSAFKIGFYIYLPFIIVDLVVSSVLLALGMMMM 241

Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
            P  IS+P K+I FV +DGWS+L + LVK ++
Sbjct: 242 SPVVISVPIKLILFVSLDGWSILSKGLVKQYL 273


>gi|119503675|ref|ZP_01625758.1| flagellar biosynthetic protein [marine gamma proteobacterium
           HTCC2080]
 gi|119460737|gb|EAW41829.1| flagellar biosynthetic protein [marine gamma proteobacterium
           HTCC2080]
          Length = 248

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 89/241 (36%), Positives = 145/241 (60%), Gaps = 6/241 (2%)

Query: 7   FALFLVTPELVFAKSSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPR 64
              FL+    +  ++++  V  +P     S +   ++   + T+L++ P +LI +T F R
Sbjct: 10  VLAFLLPESAMAQQATIPLVSTMPNANGGSDYALGIQILLVMTVLTLLPAMLITMTSFTR 69

Query: 65  FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTA 124
            +IV +ILR  MG    P N +I+ L+LF++ ++M+P  D +    ++P ++       A
Sbjct: 70  VLIVLAILRQAMGTAQTPSNQIILGLSLFLSLFIMAPVFDVAWTTALKPFLDGGTDFEGA 129

Query: 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRS 184
           ++    PF  FM   TR+ DL++F +M             D +   +L+PSF++SEL+ +
Sbjct: 130 LEAAKIPFREFMFTQTRDSDLTMFAEMGG----YGAFASQDDVPMFVLLPSFLVSELKTA 185

Query: 185 FEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           F+IGFL+ +PFL+ID++VA I+MAMGMMML P  ISLPFK++ FVLIDGW+L+   LV+S
Sbjct: 186 FQIGFLLFVPFLVIDLVVAAILMAMGMMMLSPIIISLPFKLMLFVLIDGWALVTSTLVRS 245

Query: 245 F 245
           F
Sbjct: 246 F 246


>gi|238752375|ref|ZP_04613853.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia
           rohdei ATCC 43380]
 gi|238709416|gb|EEQ01656.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia
           rohdei ATCC 43380]
          Length = 216

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 82/208 (39%), Positives = 125/208 (60%), Gaps = 2/208 (0%)

Query: 41  RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100
           +   +  ILS+ P+L++M T F +  IVFS+LR  +G+  VPPN+ I  LAL +T ++M+
Sbjct: 9   QLIVLLFILSLLPLLMVMGTSFLKLSIVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA 68

Query: 101 PT-LDRSIEMGIQPLMNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
           P  LD    +  +PL N        I   A EP+  F++ NT  +    F D+  +    
Sbjct: 69  PVGLDVHARLQDEPLPNEIGALLHHIDEHALEPYRDFLQRNTDVEQAKFFNDIVQTKWPE 128

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
                       IL+P+F +S+L  +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +
Sbjct: 129 RYRDTIKSNSLLILMPAFTLSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMVSPIT 188

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           ISLPFK++ F+LIDGW LL+  LV S++
Sbjct: 189 ISLPFKLLIFILIDGWGLLLGQLVGSYL 216


>gi|307718614|ref|YP_003874146.1| hypothetical protein STHERM_c09260 [Spirochaeta thermophila DSM
           6192]
 gi|306532339|gb|ADN01873.1| hypothetical protein STHERM_c09260 [Spirochaeta thermophila DSM
           6192]
          Length = 258

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 74/197 (37%), Positives = 118/197 (59%), Gaps = 6/197 (3%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
           AP +L++ T F R  +V   +R  +G+  VPP  V++ ++LF+T +VM PT     +   
Sbjct: 66  APSILVLTTSFLRIALVLDFIRRALGLQQVPPTQVLMGISLFLTLFVMWPTFQEVYDDSF 125

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTRE--KDLSLFMDMAHSSHRNTDITKNDHIEY 169
            PL   +I    A  R   P  +FM    +   + + LFM M+     +T       +  
Sbjct: 126 VPLSRGEIGVEEAYGRAVGPLRIFMYRQMQNDVEPIRLFMRMSGLPRPDTLA----DVPT 181

Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
            ILIP+F++ EL  +F+IG ++ +PF+IIDM+VA+ +M+MGM+MLPP  IS PFK++ FV
Sbjct: 182 HILIPAFILHELTVAFKIGIILYIPFIIIDMVVASTLMSMGMIMLPPVMISFPFKLLLFV 241

Query: 230 LIDGWSLLVENLVKSFI 246
           L+DGW+L+ + L+ SF+
Sbjct: 242 LVDGWTLITQQLLGSFV 258


>gi|1648936|gb|AAB17684.1| putative [Sinorhizobium fredii]
          Length = 249

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 69/192 (35%), Positives = 114/192 (59%), Gaps = 2/192 (1%)

Query: 56  LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115
           ++  T F +  +V  ++R  +G  ++PPN+V+ + AL +T +V +P  +++ +    P +
Sbjct: 52  VVTTTAFVKVSVVLFLVRNALGTQTIPPNIVLYAAALILTMFVSAPIAEQTYDRITDPRL 111

Query: 116 NNQ--ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILI 173
             Q       A +  ++P    ++  T E+    F+             +    ++ IL+
Sbjct: 112 RYQSLDDWAEAAKAGSQPLLEHLKKFTNEEQRRFFLSSTEKVWPEEMRARVTADDFAILV 171

Query: 174 PSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDG 233
           PSF+ISEL+R+FEIGFL+ LPF++ID+IV TI+MAMGM M+ PT I++PFK+  FV IDG
Sbjct: 172 PSFLISELKRAFEIGFLLYLPFIVIDLIVTTILMAMGMSMVSPTIIAVPFKLFLFVAIDG 231

Query: 234 WSLLVENLVKSF 245
           WS L+  LV S+
Sbjct: 232 WSRLMHGLVLSY 243


>gi|17549081|ref|NP_522421.1| type III secretion system protein [Ralstonia solanacearum GMI1000]
 gi|2494568|sp|Q52488|HRCR_RALSO RecName: Full=Hypersensitivity response secretion protein hrcR
 gi|6066701|emb|CAB58247.1| HrpT protein [Ralstonia solanacearum]
 gi|17431332|emb|CAD18011.1| hrp conserved hrcr transmembrane protein [Ralstonia solanacearum
           GMI1000]
 gi|219566950|dbj|BAH04981.1| Hrp conserved transmembrane protein [Ralstonia solanacearum]
 gi|1097280|prf||2113360F hrpT gene
          Length = 217

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 119/208 (57%), Gaps = 4/208 (1%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
              +   +++ P   ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ ++ +VM+P
Sbjct: 9   LIVMAVAIALLPFAAMVVTSYTKIVVVLGLLRNALGVQQVPPNMVLNGIAMIVSCFVMAP 68

Query: 102 TLDRSIEMGIQPLMNNQITETTA----IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
               +++     +     T  T     +    +PF  F+  +T  ++ + FM  A     
Sbjct: 69  VGMEAMQRAHVQINAQGGTNITQVMPLLDAARDPFREFLNKHTNAREKAFFMRSAQQLWP 128

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
                +    +  +L P+F ++EL  +F IGFL+ L F++ID+++A ++MA+G+  + P+
Sbjct: 129 PAKAAQLKDDDLIVLAPAFTLTELTSAFRIGFLLYLAFIVIDLVIANLLMALGLSQVTPS 188

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++++PFK++ FV++DGWS+L+  LV ++
Sbjct: 189 NVAIPFKLLLFVVMDGWSVLIHGLVNTY 216


>gi|21242688|ref|NP_642270.1| flagellar biosynthesis protein FliP [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21108161|gb|AAM36806.1| flagellar biosynthetic protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 262

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 89/224 (39%), Positives = 132/224 (58%), Gaps = 4/224 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           SL +V          +  ++T  + T +++ P +L+++T F R  IV  +LR  +G G  
Sbjct: 40  SLPNVSVGRIGDQPVSLPLQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQT 99

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           P N V++ LA+F+T  VM P   +    G+QP +NNQI  +TA     +P   FM    R
Sbjct: 100 PSNQVLLGLAMFLTALVMMPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIR 159

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           E DL  F  MA            D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++
Sbjct: 160 ETDLMTFAGMAGDGK----YAGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLV 215

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           VA+++M+MGMMML P  IS PFK++ F+L+DGW L+V  L  SF
Sbjct: 216 VASVLMSMGMMMLSPMLISAPFKILLFILVDGWVLVVGTLAASF 259


>gi|171320712|ref|ZP_02909725.1| flagellar biosynthetic protein FliP [Burkholderia ambifaria MEX-5]
 gi|171094039|gb|EDT39137.1| flagellar biosynthetic protein FliP [Burkholderia ambifaria MEX-5]
          Length = 259

 Score =  169 bits (429), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 81/214 (37%), Positives = 135/214 (63%), Gaps = 4/214 (1%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           D   ++  VR   + T+LSI P L++ +T F R +IV S++R   GM   PP  V+ISLA
Sbjct: 49  DRDGASEAVRIAVLLTLLSIGPALVVSMTAFIRIVIVLSMIRHAFGMPETPPTPVLISLA 108

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           LF+T +VM P  D      +QP M+ +I    A++  A P   FM    R+ +L L  ++
Sbjct: 109 LFLTAFVMMPAFDTLHHDALQPFMDGRIAVDRALELGAAPLRDFMLRQVRDDELRLMYEL 168

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           +     +      D +    L P+F+++ELR +F+IGF+++LPFL++D++V+T+++++GM
Sbjct: 169 SRKPLPD----SADEVGLLQLTPAFILNELRVAFQIGFVVLLPFLLLDLVVSTVLLSLGM 224

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +M+PP++ISLP K++ FVLIDGW L++  ++  F
Sbjct: 225 LMVPPSTISLPLKILMFVLIDGWGLVMRGVLGGF 258


>gi|300871793|ref|YP_003786666.1| flagellar biosynthesis protein FliP [Brachyspira pilosicoli
           95/1000]
 gi|300689494|gb|ADK32165.1| flagellar biosynthesis protein, FliP [Brachyspira pilosicoli
           95/1000]
          Length = 266

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 88/253 (34%), Positives = 145/253 (57%), Gaps = 12/253 (4%)

Query: 5   CFFALFLVTPELVFAKSSLH-----DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
               L L  P  +FA++ +        +         +  ++   + TILS++P ++IM 
Sbjct: 13  VIVILCLFAPITLFAQTQIPIPTIGLNVTQAQTPQQVSLGLQVLFLLTILSLSPSIIIMT 72

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T F R  IV S ++  + +   PP  +I+ L+LF+TF++M PTL +     +QP +N  I
Sbjct: 73  TSFVRVSIVLSFVQRALSLQETPPRALIMGLSLFLTFFIMMPTLTQINNEALQPYLNGTI 132

Query: 120 TETTAIQRVAEPFWVFMRNNTR----EKDLSLFMDMAHSSHRNTDITKNDH---IEYRIL 172
                  R  +P  +FM N+ R     K L LF+ ++ ++ R  DI   +    I   ++
Sbjct: 133 GVNDLYSRGIQPIRMFMFNSLRGENGMKSLDLFLSISDTNVRLRDIQSVEDLAKIPTIVV 192

Query: 173 IPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLID 232
           +P+F+I+EL  +F++G  + +PF++ID++VA+I+MAMGM+MLPP  ISLP K+I FV +D
Sbjct: 193 VPAFIINELTIAFKMGIYLFVPFIVIDLVVASILMAMGMIMLPPIMISLPLKIILFVAVD 252

Query: 233 GWSLLVENLVKSF 245
           GW LL+  LV+SF
Sbjct: 253 GWKLLILQLVQSF 265


>gi|225619290|ref|YP_002720516.1| flagellar biosynthesis protein FliP [Brachyspira hyodysenteriae
           WA1]
 gi|225214109|gb|ACN82843.1| flagellar biosynthesis protein FliP [Brachyspira hyodysenteriae
           WA1]
          Length = 257

 Score =  169 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 87/255 (34%), Positives = 146/255 (57%), Gaps = 14/255 (5%)

Query: 5   CFFALFLVTPELVFAKS-------SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLI 57
            F  L L+ P   +A+        ++   +         +  ++   + TILS++P ++I
Sbjct: 2   VFLVLCLLIPAAAYAQDNTKIPIPTIGLNVTQAQTPQQVSLGLQILFLLTILSLSPSIII 61

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           M T F R  IV S ++  + +   PP  +I+ L+LF+TF++M PTL +     +QP +N 
Sbjct: 62  MTTSFIRVSIVLSFVQRALSLQETPPRALIMGLSLFLTFFIMMPTLTQVNNEALQPYLNG 121

Query: 118 QITETTAIQRVAEPFWVFMRNNTR----EKDLSLFMDMAHSSHRNTDITKNDH---IEYR 170
            I       R  +P  +FM N+ R     K L LF+ ++++  R  +I   D    I   
Sbjct: 122 TIGVNELYSRGIQPIRMFMFNSLRGENGMKSLDLFLSISNTDIRLREIQTVDDLNRIPTI 181

Query: 171 ILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230
           +++P+F+I+EL  +F++G  + +PF++ID++VA+I+MAMGM+MLPP  ISLP K+I FV 
Sbjct: 182 VVVPAFIINELTIAFKMGIYLFIPFIVIDLVVASILMAMGMIMLPPIMISLPLKIILFVA 241

Query: 231 IDGWSLLVENLVKSF 245
           +DGW LL+  +V+SF
Sbjct: 242 VDGWKLLILQIVQSF 256


>gi|225871936|ref|YP_002753390.1| flagellar biosynthetic protein FliP [Acidobacterium capsulatum ATCC
           51196]
 gi|225794472|gb|ACO34562.1| flagellar biosynthetic protein FliP [Acidobacterium capsulatum ATCC
           51196]
          Length = 228

 Score =  169 bits (428), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 75/204 (36%), Positives = 118/204 (57%), Gaps = 4/204 (1%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
              + T++++ P +LI +T   R ++VF  LR  +G  + P N V++ L L MT+++M P
Sbjct: 29  IVIVLTLITVLPAILISITPMVRLLVVFHFLRQALGTQTAPSNQVLLGLGLMMTWFLMQP 88

Query: 102 TLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
            L +  +  ++P    QI+   A++R   P   FM     EKDL LF   +      T  
Sbjct: 89  VLTQIDQQAVEPYRAGQISGMQALERATAPPKAFMLRYASEKDLELFAAASMVKRPATRA 148

Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
                +    +IP++M+SEL+  FEIG ++ LPFL++DM+VA I  ++GM  LPP  IS 
Sbjct: 149 ----DLPLSAVIPAYMLSELKAGFEIGAILFLPFLLVDMVVAAITTSIGMFQLPPVVIST 204

Query: 222 PFKVIFFVLIDGWSLLVENLVKSF 245
           P K++ FV++DGW LL  +L+KSF
Sbjct: 205 PLKILLFVMVDGWHLLAASLLKSF 228


>gi|297620337|ref|YP_003708474.1| type III secretion inner membrane protein SctR [Waddlia
           chondrophila WSU 86-1044]
 gi|297375638|gb|ADI37468.1| type III secretion inner membrane protein SctR [Waddlia
           chondrophila WSU 86-1044]
          Length = 296

 Score =  169 bits (428), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 72/218 (33%), Positives = 125/218 (57%), Gaps = 11/218 (5%)

Query: 39  IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
           ++    + TILS+ P +++++T F + +IV S+LR  +G+   PPN +I  + L ++ ++
Sbjct: 78  LITQAAVLTILSMLPFIVMILTSFMKIVIVLSLLRNALGVQQAPPNQIINGVGLMLSMFI 137

Query: 99  MSPTLDRSIEMGIQPLMNNQITET-----------TAIQRVAEPFWVFMRNNTREKDLSL 147
           M PT+    E+  +     Q  ++           T      EP   F+ +N+  +  +L
Sbjct: 138 MYPTVVEMYEVSQKATQEMQAPDSVISSGSSTYILTIADATKEPLRTFLIDNSSVRHRAL 197

Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
           F  MA+              ++ I++PSF+ S+L+ +FEIG LI +PF +ID++ + I++
Sbjct: 198 FFRMAYKVLPEKYRPNLKPEDFIIVVPSFITSQLKDAFEIGVLIYIPFFVIDLVTSNILL 257

Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           AMGMMML P +IS+P K+   V++DGW+LLVE LV +F
Sbjct: 258 AMGMMMLSPVTISMPLKLFLLVMLDGWTLLVEGLVNTF 295


>gi|154249381|ref|YP_001410206.1| flagellar biosynthesis protein FliP [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153317|gb|ABS60549.1| flagellar biosynthetic protein FliP [Fervidobacterium nodosum
           Rt17-B1]
          Length = 251

 Score =  169 bits (428), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 82/251 (32%), Positives = 135/251 (53%), Gaps = 8/251 (3%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHD-----VMNIPADLSISTWIVRTFGIFTILSIAPIL 55
           M R+      +     +F++  +        +            +    I T+L++AP +
Sbjct: 1   MKRFFTILFLIFLISSIFSQDEVPIPGISIQVTPTQQPRDLVATLEILLILTVLTLAPSI 60

Query: 56  LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115
           LI+ T F R IIVFS  R  +G   VPPN V+I LAL +TF++M PT +      + P M
Sbjct: 61  LILFTSFTRIIIVFSFTRNALGTRQVPPNQVLIGLALILTFFIMQPTWNEINTNALTPYM 120

Query: 116 NNQITETTAIQRVAEPFWVFMRN-NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
           + +IT      R       FM N      +      +A++  +N  +TK +     +L  
Sbjct: 121 DGKITYQEFFSRTMASVRKFMINELVNHHNEDNVFTIANALKQN--VTKIEEAPDSLLTA 178

Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGW 234
           +F++ E+   F++G LI +PF++IDM+VA+I++++GM+M+PP  +SLPFKV+ FVL +GW
Sbjct: 179 AFVLGEVEIGFKMGILIYIPFIVIDMVVASILLSLGMIMIPPVLVSLPFKVLVFVLANGW 238

Query: 235 SLLVENLVKSF 245
             ++ +LVKSF
Sbjct: 239 ESIIVSLVKSF 249


>gi|45435136|gb|AAS60696.1| putative type III secretion apparatus protein [Yersinia pestis
           biovar Microtus str. 91001]
          Length = 201

 Score =  169 bits (427), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 74/201 (36%), Positives = 121/201 (60%), Gaps = 2/201 (0%)

Query: 48  ILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107
           +LS+ P+L++M T F +  +VFS+LR  +G+  VPPN+ I  LAL +T ++M+P      
Sbjct: 1   MLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVQ 60

Query: 108 EMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKND 165
                  ++N I        Q    P+  F++ NT  + ++ F D+  +           
Sbjct: 61  ARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPERYRDSVK 120

Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225
                IL+P+F +S+L  +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P ++SLPFK+
Sbjct: 121 PDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMTLSLPFKL 180

Query: 226 IFFVLIDGWSLLVENLVKSFI 246
           + FVL+DGWSL++  LV S++
Sbjct: 181 LVFVLVDGWSLVLGQLVGSYL 201


>gi|91791432|ref|YP_561083.1| flagellar biosynthesis protein FliP [Shewanella denitrificans
           OS217]
 gi|91713434|gb|ABE53360.1| flagellar biosynthetic protein FliP [Shewanella denitrificans
           OS217]
          Length = 229

 Score =  169 bits (427), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 80/207 (38%), Positives = 127/207 (61%), Gaps = 4/207 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +R     + L++ P+ +I +T F R IIV S++R  +G+   PPN V+I+L+LF+T + M
Sbjct: 27  LRIVLAVSSLTLIPVFVIAMTAFTRIIIVLSLVRQALGLQQTPPNSVLIALSLFLTIFAM 86

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           S   ++     + P  N  I  + A+    EP   FM + T E      +DMA      +
Sbjct: 87  SGVFEQINNKALLPYANGSIELSAAVSNGIEPLKGFMLSQTDEVHFIRVLDMAKVPVPQS 146

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                  +    L+P+FM+SEL  +F++ FLI LPFL+ID++VA+ +MA+GM+M+PP ++
Sbjct: 147 SA----DVSLTHLVPAFMLSELTLAFKMAFLIFLPFLMIDLLVASCLMALGMIMVPPITV 202

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
           SLP K++ FVLIDGWSL+  +LV+SF+
Sbjct: 203 SLPLKIMVFVLIDGWSLITGSLVQSFM 229


>gi|330819399|ref|YP_004348261.1| Type III secretion inner membrane protein SctR [Burkholderia
           gladioli BSR3]
 gi|327371394|gb|AEA62749.1| Type III secretion inner membrane protein SctR [Burkholderia
           gladioli BSR3]
          Length = 216

 Score =  169 bits (427), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 122/206 (59%), Gaps = 2/206 (0%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
              +   +S+ P + ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ ++ YVM+P
Sbjct: 10  LLLVVIAISLLPFVAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSIYVMAP 69

Query: 102 TLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
              ++ +      + +Q ++    A     EPF  F+  +T E++   F+  A       
Sbjct: 70  IGMQASKALEGQQLASQPSQALIQAFGAAKEPFRAFLVKHTAEREKRFFLRSAAVVWPKE 129

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
              +    +  +L PSF +SEL  +F+IGFL+ + F+++D+I+A +++A+G+  + PT++
Sbjct: 130 QAQQLSENDLIVLAPSFTLSELTDAFKIGFLLYIAFIVVDLIIANVLLALGLNQVTPTNV 189

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++PFK++ FV++DGWS L+  LV ++
Sbjct: 190 AIPFKLLLFVVMDGWSTLIHGLVMTY 215


>gi|194292014|ref|YP_002007921.1| type III secretion system protein [Cupriavidus taiwanensis LMG
           19424]
 gi|193225918|emb|CAQ71865.1| SctR: non flagellar T3S system inner membrane conserved protein.
           FliP/mopC/spaP family [Cupriavidus taiwanensis LMG
           19424]
          Length = 219

 Score =  169 bits (427), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 73/210 (34%), Positives = 121/210 (57%), Gaps = 4/210 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V    I     IAP + +MVT + + +IVF +LR  +G+  VPPN+V+  +A+ +T Y+M
Sbjct: 9   VLILTIILTFGIAPFVALMVTSYTKLVIVFGLLRAALGLQQVPPNMVLNGIAIILTAYIM 68

Query: 100 SPT----LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSS 155
           +P      D            N     T    V+ P   F+  +T E++ + F+  A   
Sbjct: 69  APIGSDAFDAIKRRADANAAFNVNDVVTVYDAVSGPLKEFLVKHTEERNRTFFVQSAKRI 128

Query: 156 HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
                       +  +LIPSF +SEL R+F+IGF++ L F+++D+IVA I++A+GM M+ 
Sbjct: 129 WPEGRADDLKSDDMMVLIPSFTLSELTRAFQIGFVVYLVFVVVDLIVAAILLALGMSMVA 188

Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           PT+IS+PFK++ FV+++GW+ L++ LV S+
Sbjct: 189 PTTISVPFKLLLFVMLEGWTQLIQGLVLSY 218


>gi|310823554|ref|YP_003955912.1| type III secretion apparatus protein yscr/hrcr [Stigmatella
           aurantiaca DW4/3-1]
 gi|309396626|gb|ADO74085.1| Type III secretion apparatus protein YscR/HrcR [Stigmatella
           aurantiaca DW4/3-1]
          Length = 206

 Score =  169 bits (427), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 67/205 (32%), Positives = 127/205 (61%), Gaps = 2/205 (0%)

Query: 43  FGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT 102
             +  +LS+ P  ++M+T F +  +V S+ R+ MG    PP +V+  LA  ++ ++MSP 
Sbjct: 1   MAVLAVLSLLPFAVVMLTSFSKIAVVLSLARSAMGTQQAPPTVVLTGLAAVLSAHIMSPV 60

Query: 103 LDRSIEMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD 160
           + R  E+G +   + +       A++R AEP   F+  +   ++ S F+++A       +
Sbjct: 61  MARMYEVGREAARDAESGAQILAAVERTAEPLRAFLVKHGSAEERSRFVELARELRPPEE 120

Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
            T+    +  +++P+F+I+EL+ +F++GFL+ LPFL++DM++A I++A+GM  L P+ +S
Sbjct: 121 ATQVQEGDLFVVVPAFVITELKEAFQMGFLLFLPFLVLDMVIANILLALGMQSLSPSQVS 180

Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245
           LPFK++ FV +DGW LL + L++ +
Sbjct: 181 LPFKILLFVTVDGWPLLAQGLIQGY 205


>gi|300693806|ref|YP_003749779.1| hypersensitivity response secretion protein hrcr, type III
           secretion system [Ralstonia solanacearum PSI07]
 gi|299075843|emb|CBJ35152.1| Hypersensitivity response secretion protein hrcR, type III
           secretion system [Ralstonia solanacearum PSI07]
          Length = 217

 Score =  168 bits (426), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 118/208 (56%), Gaps = 4/208 (1%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
              +   +++ P   ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ ++ ++M+P
Sbjct: 9   LIVMAVAIALLPFAAMVVTSYTKIVVVLGLLRNALGVQQVPPNMVLNGIAMIVSCFIMAP 68

Query: 102 TLDRSIEMGIQPLMNNQITETTA----IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
               +++     +     T  T     +    +PF  F+  +T  ++ + FM  A     
Sbjct: 69  VGMEAMQRAHVQINAQGGTNITQVMPLLDAARDPFREFLNKHTNAREKAFFMRSAQQLWP 128

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
                     +  +L P+F ++EL  +F IGFL+ L F++ID+++A ++MA+G+  + P+
Sbjct: 129 PAKAALLKDDDLIVLAPAFTLTELTSAFRIGFLLYLAFIVIDLVIANLLMALGLSQVTPS 188

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++++PFK++ FV++DGWS+LV  LV ++
Sbjct: 189 NVAIPFKLLLFVVMDGWSVLVHGLVNTY 216


>gi|238785155|ref|ZP_04629149.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia
           bercovieri ATCC 43970]
 gi|238713970|gb|EEQ05988.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia
           bercovieri ATCC 43970]
          Length = 216

 Score =  168 bits (426), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 74/193 (38%), Positives = 117/193 (60%), Gaps = 2/193 (1%)

Query: 56  LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRSIEMGIQPL 114
           ++M T F +  IVFS+LR  +G+  VPPN+ I  LAL +T ++M+P  LD    +  +PL
Sbjct: 24  VVMGTSFLKLSIVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVHARLQDEPL 83

Query: 115 MNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILI 173
            N        I + A  P+  F++ NT  +  + F D+  +                IL+
Sbjct: 84  PNEIGALLEHIDKHALGPYRDFLQRNTDAEQATFFNDIVQTKWPERLRDSVKPSSLLILM 143

Query: 174 PSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDG 233
           P+F +S+L  +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK++ F+L++G
Sbjct: 144 PAFTLSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMVSPITISLPFKLLIFILVNG 203

Query: 234 WSLLVENLVKSFI 246
           W LL+  LV S++
Sbjct: 204 WGLLMGQLVGSYL 216


>gi|226225725|ref|YP_002759831.1| flagellar biosynthetic protein FliP [Gemmatimonas aurantiaca T-27]
 gi|226088916|dbj|BAH37361.1| flagellar biosynthetic protein FliP [Gemmatimonas aurantiaca T-27]
          Length = 255

 Score =  168 bits (426), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 78/185 (42%), Positives = 115/185 (62%), Gaps = 4/185 (2%)

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R +IV   L+  MG  S PP  ++  +AL +T +VM PTL       I P ++ QIT
Sbjct: 74  GFTRILIVLQFLKQAMGTQSAPPGALLAGMALLLTGFVMGPTLSEVNRTAITPWLDGQIT 133

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
           +   ++   +P   FM   TR+ D+  F+ ++     NT     D +   +L+ +F+ SE
Sbjct: 134 QVEMMKTGVQPLRTFMLKQTRQSDVETFVKLSRMPQPNT----VDDVPLHVLMSAFVASE 189

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           LR +F+IGF I LPF+IID +VA+++M+MGM MLPP  ISLPFK++ FVL+DGWSL + +
Sbjct: 190 LRTAFQIGFAIYLPFIIIDAVVASVLMSMGMFMLPPAMISLPFKLLLFVLVDGWSLTITS 249

Query: 241 LVKSF 245
           LV+SF
Sbjct: 250 LVQSF 254


>gi|269302615|gb|ACZ32715.1| type III secretion apparatus protein, YscR/HrcR family
           [Chlamydophila pneumoniae LPCoLN]
          Length = 306

 Score =  168 bits (425), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 67/213 (31%), Positives = 122/213 (57%), Gaps = 11/213 (5%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            I   L+++P L++++T + + II   +LR  +G+   PP+ V+  +AL ++ YVM PT 
Sbjct: 93  IILIFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTG 152

Query: 104 DRSIEMGIQPLMNNQITET-----------TAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
               +   + +  N I ++            A+ +  EP   F+  NT +  +  F  ++
Sbjct: 153 VAMYKDARKEIEANTIPQSLFTAEGAETVFVALNKSKEPLRSFLIRNTPKAQIQSFYKIS 212

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
             +  +         ++ I+IP+F++ +++ +FEIG LI LPF +ID++ A +++AM MM
Sbjct: 213 QKTFPSEIREHLTASDFVIIIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQMM 272

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ML P SISLP K++  V++DGW+LL++ L+ SF
Sbjct: 273 MLSPLSISLPLKLLLIVMVDGWTLLLQGLMISF 305


>gi|238793338|ref|ZP_04636964.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia
           intermedia ATCC 29909]
 gi|238727307|gb|EEQ18835.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia
           intermedia ATCC 29909]
          Length = 216

 Score =  168 bits (425), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 75/193 (38%), Positives = 118/193 (61%), Gaps = 2/193 (1%)

Query: 56  LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRSIEMGIQPL 114
           ++M T F +  IVFS+LR  +G+  VPPN+ I  LAL +T ++M+P  LD    +  +PL
Sbjct: 24  MVMGTSFLKLSIVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVHARLQDEPL 83

Query: 115 MNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILI 173
            N+       I   A  P+  F++ NT  + ++ F D+  +                IL+
Sbjct: 84  PNDIGALLQHIDEHALVPYRDFLQRNTDTEQVTFFNDIVQTKWPERYRNSVKPNSLLILM 143

Query: 174 PSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDG 233
           P+F +++L  +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK++ F+LIDG
Sbjct: 144 PAFTLTQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMVSPITISLPFKLLIFILIDG 203

Query: 234 WSLLVENLVKSFI 246
           W LL+  LV S++
Sbjct: 204 WGLLLGQLVGSYL 216


>gi|296125240|ref|YP_003632492.1| flagellar biosynthetic protein FliP [Brachyspira murdochii DSM
           12563]
 gi|296017056|gb|ADG70293.1| flagellar biosynthetic protein FliP [Brachyspira murdochii DSM
           12563]
          Length = 262

 Score =  168 bits (425), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 85/246 (34%), Positives = 143/246 (58%), Gaps = 14/246 (5%)

Query: 14  PELVFAKS-------SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
           P   +A++       ++   +         +  ++   + TILS++P ++IM T F R  
Sbjct: 16  PAAAYAQNNTQIPIPTIGLNVTQAQTPQQVSLGLQILFLLTILSLSPSIIIMTTSFIRVS 75

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IV S ++  + +   PP  +I+ L+LF+TF++M PTL +     +QP +N  I       
Sbjct: 76  IVLSFVQRALSLQETPPRALIMGLSLFLTFFIMMPTLTQVNNEALQPYLNGSIGVNELYS 135

Query: 127 RVAEPFWVFMRNNTR----EKDLSLFMDMAHSSHRNTDITKNDH---IEYRILIPSFMIS 179
           R  +P  +FM N+ R     K L LF+ ++ ++ R  DI   D    I   +++P+F+I+
Sbjct: 136 RGIQPIRMFMFNSLRGENGMKSLDLFLSISDTNIRLRDIQTVDDLNRIPTIVVVPAFIIN 195

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL  +F++G  + +PF++ID++VA+I+MAMGM+MLPP  ISLP K+I FV +DGW LL+ 
Sbjct: 196 ELTIAFKMGIYLFIPFIVIDLVVASILMAMGMIMLPPIMISLPLKIILFVAVDGWKLLIL 255

Query: 240 NLVKSF 245
            +V+SF
Sbjct: 256 QIVQSF 261


>gi|203284196|ref|YP_002221936.1| flagellar biosynthesis protein [Borrelia duttonii Ly]
 gi|203287735|ref|YP_002222750.1| flagellar biosynthesis protein [Borrelia recurrentis A1]
 gi|201083639|gb|ACH93230.1| flagellar biosynthesis protein [Borrelia duttonii Ly]
 gi|201084955|gb|ACH94529.1| flagellar biosynthesis protein [Borrelia recurrentis A1]
          Length = 254

 Score =  168 bits (425), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 78/197 (39%), Positives = 119/197 (60%), Gaps = 7/197 (3%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P  L+++T F R  IV   +R  + +   PPN VI+ LALF+T + M PT +   +    
Sbjct: 62  PAFLVLMTSFLRIAIVLDFIRRALSLQQSPPNQVIMGLALFLTLFTMWPTFNIIYKDAYL 121

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRN---NTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169
           PL +++I       R   P   FM     N+R +++ LFM ++  +           +  
Sbjct: 122 PLRDSKINFNEFYDRGIAPLRNFMYKQMSNSRHEEIRLFMSISDYAKPK----NFSEVPT 177

Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
            +LI SF++ EL+ +F++G LI LPF+IID+IVA ++MAMGM+MLPP  ISLPFK+I FV
Sbjct: 178 HVLIASFILHELKVAFKMGILIFLPFIIIDIIVAAVLMAMGMIMLPPVIISLPFKLILFV 237

Query: 230 LIDGWSLLVENLVKSFI 246
           ++DGW+L+   L+KSF+
Sbjct: 238 MVDGWTLITSGLIKSFM 254


>gi|15618734|ref|NP_225020.1| type III secretion system protein [Chlamydophila pneumoniae CWL029]
 gi|15836358|ref|NP_300882.1| type III secretion system protein [Chlamydophila pneumoniae J138]
 gi|16752215|ref|NP_445583.1| type III secretion system protein [Chlamydophila pneumoniae AR39]
 gi|33242185|ref|NP_877126.1| type III secretion system protein [Chlamydophila pneumoniae TW-183]
 gi|4377137|gb|AAD18962.1| Yop proteins translocation protein R [Chlamydophila pneumoniae
           CWL029]
 gi|6672012|dbj|BAA88643.1| Yop translocation R [Chlamydophila pneumoniae]
 gi|7189960|gb|AAF38821.1| type III secretion inner membrane protein SctR [Chlamydophila
           pneumoniae AR39]
 gi|8979199|dbj|BAA99033.1| Yop translocation R [Chlamydophila pneumoniae J138]
 gi|33236696|gb|AAP98783.1| YscR [Chlamydophila pneumoniae TW-183]
          Length = 306

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 67/213 (31%), Positives = 122/213 (57%), Gaps = 11/213 (5%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            I   L+++P L++++T + + II   +LR  +G+   PP+ V+  +AL ++ YVM PT 
Sbjct: 93  IILIFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTG 152

Query: 104 DRSIEMGIQPLMNNQITET-----------TAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
               +   + +  N I ++            A+ +  EP   F+  NT +  +  F  ++
Sbjct: 153 VAMYKDARKEIEANTIPQSLFTAEGAETVFVALNKSKEPLRSFLIRNTPKAQIQSFYKIS 212

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
             +  +         ++ I+IP+F++ +++ +FEIG LI LPF +ID++ A +++AM MM
Sbjct: 213 QKTFPSEIRAHLTASDFVIIIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQMM 272

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ML P SISLP K++  V++DGW+LL++ L+ SF
Sbjct: 273 MLSPLSISLPLKLLLIVMVDGWTLLLQGLMISF 305


>gi|48256988|gb|AAT41683.1| type three secretion apparatus protein R [Edwardsiella ictaluri]
 gi|84663102|gb|ABC60084.1| EsaR [Edwardsiella ictaluri 93-146]
          Length = 250

 Score =  167 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 69/214 (32%), Positives = 121/214 (56%), Gaps = 1/214 (0%)

Query: 33  LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
           +S++        +   LS+ P+L++M T F +  +VF++LR  +G+  +PPNL +  LAL
Sbjct: 36  MSLTEQPAELIALLVTLSLLPLLIVMGTSFLKLSVVFALLRNALGIQQIPPNLALYGLAL 95

Query: 93  FMTFYVMSPTLDRS-IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
            +T ++M+P        +   P        +       +P+  F+R +T  K L  F  +
Sbjct: 96  ILTLFIMTPVGTAVQARLADAPAQAQTTLLSRLSDNTLDPYRQFLRQHTSAKQLKFFRQV 155

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           A  S   +   K       +L+P+F +S+L  +F+IG L+ LPF+ ID+IV+ I++AMGM
Sbjct: 156 ATKSWPASVREKISDNSLLLLMPAFAVSQLVEAFQIGLLLFLPFIAIDLIVSNILLAMGM 215

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MM+ P +IS+PFK++ F+L+ GW  ++  L+ S+
Sbjct: 216 MMVSPMTISMPFKLLVFILVGGWDKILGQLLLSY 249


>gi|207724580|ref|YP_002254977.1| hrp protein hrcr [Ralstonia solanacearum MolK2]
 gi|207739216|ref|YP_002257609.1| hrp protein hrcr [Ralstonia solanacearum IPO1609]
 gi|206589802|emb|CAQ36763.1| hrp conserved protein hrcr [Ralstonia solanacearum MolK2]
 gi|206592589|emb|CAQ59495.1| hrp conserved protein hrcr [Ralstonia solanacearum IPO1609]
          Length = 217

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 119/208 (57%), Gaps = 4/208 (1%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
              +   +++ P   ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ ++ ++M+P
Sbjct: 9   LIVMAVAIALLPFAAMVVTSYTKIVVVLGLLRNALGVQQVPPNMVLNGIAMIVSCFIMAP 68

Query: 102 TLDRSIEMGIQPLMNN---QITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
               +++     L       IT+   +     +PF  F+  +T  ++ + FM  A     
Sbjct: 69  VGMEAMQRAHVQLNAQGGANITQVMPLLDAARDPFREFLNKHTNAREKAFFMRSAQQLWP 128

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
                     +  +L P+F ++EL  +F IGFL+ L F++ID+++A ++MA+G+  + P+
Sbjct: 129 PAKAALLKEDDLIVLAPAFTLTELTSAFRIGFLLYLAFIVIDLVIANLLMALGLSQVTPS 188

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++++PFK++ FV++DGWS+LV  LV ++
Sbjct: 189 NVAIPFKLLLFVVMDGWSVLVHGLVNTY 216


>gi|238755993|ref|ZP_04617318.1| Surface presentation of antigens protein spaP [Yersinia ruckeri
           ATCC 29473]
 gi|238705782|gb|EEP98174.1| Surface presentation of antigens protein spaP [Yersinia ruckeri
           ATCC 29473]
          Length = 218

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 58/209 (27%), Positives = 118/209 (56%), Gaps = 2/209 (0%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V    I  + ++ P ++   TCF +  IV  ++R  MG+  +P N+ +  +AL ++ +VM
Sbjct: 5   VPLIAIVALTTLLPFIIAAGTCFLKISIVLIMVRNAMGVQQIPSNIALNGIALLLSLFVM 64

Query: 100 SPTLDRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
            P ++   +   +    M +  +    +      +  +++  +  + LS F  +      
Sbjct: 65  MPVINDINDYVREQKVEMTDVDSVNRFVDGGLGGYKSYLKKYSDPELLSFFESVQRGRSE 124

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
           +    + + +    L+P++ +SE++ +FEIGF I LPF++ID+++++I++A+GMMM+ P 
Sbjct: 125 HEIDVEKEEVTLFSLLPAYALSEIKSAFEIGFYIYLPFVVIDLVISSILLALGMMMMSPV 184

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +IS+P K+I FV +DGW+L+ + LV  +I
Sbjct: 185 TISVPIKLILFVAMDGWALISKGLVMQYI 213


>gi|172064928|ref|YP_001815640.1| Yop virulence translocation R [Burkholderia ambifaria MC40-6]
 gi|171997170|gb|ACB68087.1| Yop virulence translocation R [Burkholderia ambifaria MC40-6]
          Length = 218

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 118/208 (56%), Gaps = 4/208 (1%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
                  +S+ P + ++ T + + ++V  +LR  +G+  VPPN+V+  +A+ ++ YVM+P
Sbjct: 10  LLITVVAISLIPFVAMVATSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAVLVSAYVMAP 69

Query: 102 TLDRSIEMGIQ----PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
              ++++        P  +  +    A     EPF  F++ +  E++   F+  A     
Sbjct: 70  IGMQAMQTMQTMHRTPGSDTSLVVLDAFDAAKEPFRAFLKKHAHEREKRFFVRSATVVWP 129

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
                K    +  +L P+F ++E+  +F+IGFL+ + F+++D+++A ++MAMG+  + PT
Sbjct: 130 KDMAAKVREDDLIVLAPAFTLTEMADAFKIGFLLYIAFIVVDLVIANVLMAMGLNQVQPT 189

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++++PFK++ FV++ GWS L+  LV ++
Sbjct: 190 NVAIPFKLLLFVVMSGWSTLIHGLVMTY 217


>gi|171316782|ref|ZP_02905993.1| Yop virulence translocation R [Burkholderia ambifaria MEX-5]
 gi|171098040|gb|EDT42856.1| Yop virulence translocation R [Burkholderia ambifaria MEX-5]
          Length = 216

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 58/212 (27%), Positives = 117/212 (55%), Gaps = 2/212 (0%)

Query: 36  STWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMT 95
           +  I        ++S+ P + ++VT + + ++V  +LR  +G+  VPPN+VI  +A+ ++
Sbjct: 4   AGDITGLLVAVVLISLVPFVAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVINGIAILVS 63

Query: 96  FYVMSPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
            YVM+P    ++       P  N        +    EPF  F+  +   ++   F+  A 
Sbjct: 64  VYVMAPVGMSALRDIESKPPAGNASEAVIQILGNAREPFREFLAKHAATREKRFFLRSAS 123

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
                         +  +L P+F +++L  +F+IGFL+ + F+++D+++A +++AMG+  
Sbjct: 124 IVWPKEAAAALQENDLIVLAPAFALTQLTDAFKIGFLLYIAFIVLDLVIANVLLAMGLNQ 183

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           + PT++++PFK++ FV++DGWS L+  L+ SF
Sbjct: 184 VNPTNVAIPFKLLLFVVMDGWSTLIHGLIVSF 215


>gi|115360604|ref|YP_777741.1| type III secretion system protein [Burkholderia ambifaria AMMD]
 gi|170698360|ref|ZP_02889434.1| Yop virulence translocation R [Burkholderia ambifaria IOP40-10]
 gi|254253710|ref|ZP_04947027.1| Type III secretory pathway component EscR [Burkholderia dolosa
           AUO158]
 gi|115285932|gb|ABI91407.1| Yop virulence translocation R [Burkholderia ambifaria AMMD]
 gi|124898355|gb|EAY70198.1| Type III secretory pathway component EscR [Burkholderia dolosa
           AUO158]
 gi|170136699|gb|EDT04953.1| Yop virulence translocation R [Burkholderia ambifaria IOP40-10]
          Length = 218

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 118/208 (56%), Gaps = 4/208 (1%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
                  +S+ P + ++ T + + ++V  +LR  +G+  VPPN+V+  +A+ ++ YVM+P
Sbjct: 10  LLITVVAISLIPFVAMVATSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAVLVSAYVMAP 69

Query: 102 TLDRSIEMGIQ----PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
              ++++        P  +  +    A     EPF  F++ +  E++   F+  A     
Sbjct: 70  IGMQAMQTMQTMHRTPGSDTSLVVLDAFDAAKEPFRAFLKKHAHEREKRFFVRSATVVWP 129

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
                K    +  +L P+F ++E+  +F+IGFL+ + F+++D+++A ++MAMG+  + PT
Sbjct: 130 KDMAAKIREDDLIVLAPAFTLTEMADAFKIGFLLYIAFIVVDLVIANVLMAMGLNQVQPT 189

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++++PFK++ FV++ GWS L+  LV ++
Sbjct: 190 NVAIPFKLLLFVVMSGWSTLIHGLVMTY 217


>gi|325928699|ref|ZP_08189871.1| flagellar biosynthetic protein FliP [Xanthomonas perforans 91-118]
 gi|325540931|gb|EGD12501.1| flagellar biosynthetic protein FliP [Xanthomonas perforans 91-118]
          Length = 270

 Score =  167 bits (422), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 89/224 (39%), Positives = 132/224 (58%), Gaps = 4/224 (1%)

Query: 22  SLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSV 81
           SL +V          +  ++T  + T +++ P +L+++T F R  IV  +LR  +G G  
Sbjct: 48  SLPNVSVGRIGDQPVSLPLQTLLLMTAITLLPSMLLVLTAFTRITIVLGLLRQALGTGQT 107

Query: 82  PPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTR 141
           P N V++ LA+F+T  VM P   +    G+QP +NNQI  +TA     +P   FM    R
Sbjct: 108 PSNQVLLGLAMFLTALVMMPVWQKMWGAGLQPYLNNQIDFSTAWTLTTQPLRAFMLAQIR 167

Query: 142 EKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMI 201
           E DL  F  MA            D + + +L+ SF+ SEL+ +FEIGFLI +PF+IID++
Sbjct: 168 ETDLMTFAGMAGDGK----YAGPDAVPFPVLVASFVTSELKTAFEIGFLIFIPFVIIDLV 223

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           VA+++M+MGMMML P  IS PFK++ F+L+DGW L+V  L  SF
Sbjct: 224 VASVLMSMGMMMLSPMLISAPFKILLFILVDGWVLVVGTLAASF 267


>gi|197248361|ref|YP_002146623.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197212064|gb|ACH49461.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
          Length = 215

 Score =  167 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 77/214 (35%), Positives = 126/214 (58%), Gaps = 1/214 (0%)

Query: 33  LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
           +S+    ++  GI  +LSI P++++M T F +  +VFSILR  +G+  VPPN+ +  LAL
Sbjct: 1   MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL 60

Query: 93  FMTFYVMSPTLDRSIEM-GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
            ++ ++M PTL    E      +       +    +   P+  F++ N+ EK+ + F ++
Sbjct: 61  VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL 120

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
              +       K       ILIP+F +S+L ++F IG LI LPFL ID++++ I++AMGM
Sbjct: 121 IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM 180

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MM+ P +ISLPFK++ F+L  GW L +  LV+SF
Sbjct: 181 MMVSPMTISLPFKLLIFLLAGGWDLTLAKLVQSF 214


>gi|270285645|ref|ZP_06195039.1| type III secretion system protein [Chlamydia muridarum Nigg]
          Length = 271

 Score =  167 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 67/213 (31%), Positives = 122/213 (57%), Gaps = 11/213 (5%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            I   L+++P L++++T + + II   +LR  +G+   PP+ V+  +AL ++ YVM PT 
Sbjct: 58  VIILFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTG 117

Query: 104 DRSIEMGIQPLMNNQI-----------TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
                   + + ++ +           T   A+ +  EP   F+ NNT +  +  F  ++
Sbjct: 118 MAMYNDAKKGIESDAVPRDLFSAEGAETVFVALNKSKEPLRSFLINNTPKPQIQSFYKIS 177

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
             +       +    ++ ++IP+F++ +++ +FEIG LI LPF +ID++ A +++AM MM
Sbjct: 178 QKTFPPELRQQLTPSDFVVVIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQMM 237

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ML P SISLP K++  V++DGW+LL+E L+ SF
Sbjct: 238 MLSPLSISLPLKLLLVVMVDGWTLLLEGLMISF 270


>gi|317406210|gb|EFV86458.1| flagellar biosynthetic protein FliP [Achromobacter xylosoxidans
           C54]
          Length = 168

 Score =  167 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 79/170 (46%), Positives = 114/170 (67%), Gaps = 4/170 (2%)

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVF 135
           MG    PPN V+I LALF+TFY MSP  D+      +PL    I    A++R A P   F
Sbjct: 1   MGTAMSPPNHVLIGLALFLTFYTMSPVFDKIYTDAYKPLSEGSIQFEAAVERAAGPLRTF 60

Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195
           M + TRE DL+LF ++A        +     +  RIL+P+F+ SEL+ +F+IGF I +PF
Sbjct: 61  MLHQTRENDLALFANLAKQP----ALEDPSQVPLRILVPAFITSELKTAFQIGFTIFIPF 116

Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LIID++VA+++MA+GMMM+PP +++LPFK++ FVL DGW+LL+ +L +SF
Sbjct: 117 LIIDLVVASVLMALGMMMVPPVTVALPFKLMLFVLADGWNLLMGSLAQSF 166


>gi|284006888|emb|CBA72157.1| type III secretion component protein SctR [Arsenophonus nasoniae]
          Length = 192

 Score =  167 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 68/190 (35%), Positives = 108/190 (56%), Gaps = 2/190 (1%)

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQP--LM 115
           M T F +  +VFS+LR  +G+  +PPN+ I  L++ +T YVM+P    + +   +    +
Sbjct: 1   MATSFVKMAMVFSLLRNALGVQQIPPNMAIYGLSIILTLYVMAPVALATKDFLNENPISL 60

Query: 116 NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPS 175
           +   +     +   +P+  F+  +   ++   F +                    IL+P+
Sbjct: 61  SANASLEYFFEEGTKPYKSFLTKHINPREKEFFNENIAKYWPAKYANSVSSDSLFILLPA 120

Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235
           F ISEL R+FEIGFL+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK++ FV+ DGWS
Sbjct: 121 FTISELTRAFEIGFLLYLPFIAIDLIVSNILLAMGMMMVSPMTISLPFKLLLFVMFDGWS 180

Query: 236 LLVENLVKSF 245
            L   LV S+
Sbjct: 181 RLSHGLVLSY 190


>gi|119714990|ref|YP_921955.1| flagellar biosynthesis protein FliP [Nocardioides sp. JS614]
 gi|119535651|gb|ABL80268.1| flagellar biosynthetic protein FliP [Nocardioides sp. JS614]
          Length = 266

 Score =  167 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 80/220 (36%), Positives = 134/220 (60%), Gaps = 4/220 (1%)

Query: 26  VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
            +++       +  V      T++S+ P +L+  T F +  +V  + R  +G+   PPN 
Sbjct: 49  TVDLGGLTDSPSTSVTVLIGLTLISLLPAILLSCTAFTKIFVVLGLTRNALGLQQTPPNQ 108

Query: 86  VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145
           V+  LALF++ +VM P L    E+G+QP +N   T + AIQ   EP   FM +NT + +L
Sbjct: 109 VLAGLALFLSLFVMGPVLSDINEVGLQPYLNGDKTTSVAIQDGIEPLRDFMLDNTDDDEL 168

Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
            L  ++A              +    LIP+F+++EL+++F IGF+I +PFL+ID++V+  
Sbjct: 169 MLLTNVAGRDLPEDRA----DVSTATLIPAFVLTELKQAFIIGFIIFIPFLVIDLVVSGA 224

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +MA+GMMM+PP  +SLPFK++ FVL+DGW+L++++LV S+
Sbjct: 225 LMALGMMMMPPVMVSLPFKLLLFVLVDGWALVIKSLVASY 264


>gi|261884803|ref|ZP_06008842.1| flagellar biosynthesis protein FliP [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 190

 Score =  167 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 80/167 (47%), Positives = 108/167 (64%), Gaps = 4/167 (2%)

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           ++T F R IIVFS LR  MG   +PP  V+ISLAL +TF++M P   +S   GI+P +  
Sbjct: 28  VMTSFLRLIIVFSFLRQAMGTQQMPPTNVLISLALILTFFIMEPVAKQSYNEGIKPYLEE 87

Query: 118 QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFM 177
           +I    A    A+PF  FM  NTREKDL+LF  +    + NT     D I + I  P+F+
Sbjct: 88  KIGYQDAFALGAKPFKEFMVRNTREKDLALFYRIRALPNPNT----VDDIPFTIAAPAFI 143

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           ISEL+ +FEIGF++ LP L+IDM+V +++M+MGMM LPP  ISL FK
Sbjct: 144 ISELKTAFEIGFMLYLPVLVIDMVVNSVLMSMGMMTLPPEMISLTFK 190


>gi|300697461|ref|YP_003748122.1| Hypersensitivity response secretion protein hrcR, type III
           secretion system [Ralstonia solanacearum CFBP2957]
 gi|299074185|emb|CBJ53730.1| Hypersensitivity response secretion protein hrcR, type III
           secretion system [Ralstonia solanacearum CFBP2957]
          Length = 217

 Score =  167 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 117/208 (56%), Gaps = 4/208 (1%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
              +   +++ P   ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ ++ ++M+P
Sbjct: 9   LIVMAVAIALLPFAAMVVTSYTKIVVVLGLLRNALGVQQVPPNMVLNGIAMIVSCFIMAP 68

Query: 102 TLDRSIEMGIQPLMNNQITETTA----IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
               +++     L        T     +    +PF  F+  +T  ++ + FM  A     
Sbjct: 69  VGMEAMQRAHVQLNAQGGATITQVMPLLDAARDPFREFLNKHTNAREKAFFMRSAQQLWP 128

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
                     +  +L P+F ++EL  +F IGFL+ L F++ID+++A ++MA+G+  + P+
Sbjct: 129 PAKAALLKEDDLIVLAPAFTLTELTSAFRIGFLLYLAFIVIDLVIANLLMALGLSQVTPS 188

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++++PFK++ FV++DGWS+LV  LV ++
Sbjct: 189 NVAIPFKLLLFVVMDGWSVLVHGLVNTY 216


>gi|16764769|ref|NP_460384.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|56413610|ref|YP_150685.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62180010|ref|YP_216427.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161614164|ref|YP_001588129.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167551612|ref|ZP_02345366.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|167995053|ref|ZP_02576143.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168233614|ref|ZP_02658672.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|168239303|ref|ZP_02664361.1| type III secretion apparatus protein, YscR/HrcR family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168240932|ref|ZP_02665864.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168263749|ref|ZP_02685722.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168463171|ref|ZP_02697102.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|194448961|ref|YP_002045422.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194472648|ref|ZP_03078632.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194736899|ref|YP_002114432.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197266014|ref|ZP_03166088.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197362534|ref|YP_002142171.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|198242436|ref|YP_002215713.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200390900|ref|ZP_03217511.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204927846|ref|ZP_03219047.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|224584070|ref|YP_002637868.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238913178|ref|ZP_04657015.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|2494570|sp|P74890|YSCR_SALTY RecName: Full=Virulence protein yscR
 gi|1526985|emb|CAA68199.1| secretion system apparatus, SsaR [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|16419940|gb|AAL20343.1| secretion system apparatus protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|56127867|gb|AAV77373.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62127643|gb|AAX65346.1| Secretion system apparatus SsaR [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161363528|gb|ABX67296.1| hypothetical protein SPAB_01906 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194407265|gb|ACF67484.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194459012|gb|EDX47851.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194712401|gb|ACF91622.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|195634326|gb|EDX52678.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197094011|emb|CAR59507.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197244269|gb|EDY26889.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197288009|gb|EDY27396.1| type III secretion apparatus protein, YscR/HrcR family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197936952|gb|ACH74285.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|199603345|gb|EDZ01891.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204323188|gb|EDZ08384.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205323559|gb|EDZ11398.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205327197|gb|EDZ13961.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205332323|gb|EDZ19087.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|205339292|gb|EDZ26056.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205347547|gb|EDZ34178.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|224468597|gb|ACN46427.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261246625|emb|CBG24435.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267993308|gb|ACY88193.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157954|emb|CBW17449.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912404|dbj|BAJ36378.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321224041|gb|EFX49104.1| Type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|322615097|gb|EFY12020.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619938|gb|EFY16811.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622250|gb|EFY19095.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627772|gb|EFY24562.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632883|gb|EFY29627.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636626|gb|EFY33329.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641181|gb|EFY37823.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644884|gb|EFY41417.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650280|gb|EFY46694.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655853|gb|EFY52155.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660179|gb|EFY56418.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665255|gb|EFY61443.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669512|gb|EFY65660.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673438|gb|EFY69540.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677366|gb|EFY73430.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322679971|gb|EFY76010.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687443|gb|EFY83415.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322714477|gb|EFZ06048.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323129691|gb|ADX17121.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323194104|gb|EFZ79303.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198585|gb|EFZ83686.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202911|gb|EFZ87946.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208631|gb|EFZ93569.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211167|gb|EFZ96014.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217608|gb|EGA02323.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323218957|gb|EGA03467.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323223787|gb|EGA08091.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229410|gb|EGA13533.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323232633|gb|EGA16729.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240329|gb|EGA24373.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242682|gb|EGA26703.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323245893|gb|EGA29881.1| type III secretion system protein YscR [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252457|gb|EGA36304.1| type III secretion system protein YscR [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256476|gb|EGA40209.1| type III secretion system protein YscR [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260039|gb|EGA43664.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323271479|gb|EGA54900.1| type III secretion system protein YscR [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326623460|gb|EGE29805.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|332988306|gb|AEF07289.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 215

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 77/214 (35%), Positives = 126/214 (58%), Gaps = 1/214 (0%)

Query: 33  LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
           +S+    ++  GI  +LSI P++++M T F +  +VFSILR  +G+  VPPN+ +  LAL
Sbjct: 1   MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL 60

Query: 93  FMTFYVMSPTLDRSIEM-GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
            ++ ++M PTL    E      +       +    +   P+  F++ N+ EK+ + F ++
Sbjct: 61  VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL 120

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
              +       K       ILIP+F +S+L ++F IG LI LPFL ID++++ I++AMGM
Sbjct: 121 IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM 180

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MM+ P +ISLPFK++ F+L  GW L +  LV+SF
Sbjct: 181 MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF 214


>gi|161503487|ref|YP_001570599.1| type III secretion system protein [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864834|gb|ABX21457.1| hypothetical protein SARI_01563 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 215

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/214 (36%), Positives = 127/214 (59%), Gaps = 1/214 (0%)

Query: 33  LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
           +S+    ++  GI  +LSI P++++M T F +  +VFSILR  +G+  VPPN+ +  LAL
Sbjct: 1   MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL 60

Query: 93  FMTFYVMSPTLDRSIEM-GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
            ++ ++M PTL    E      + +     +    +   P+  F++ N+ EK+ S F ++
Sbjct: 61  VLSLFIMGPTLLAVKERWHPVQVADAPFWMSEWDSKALAPYRQFLQKNSEEKEASYFRNL 120

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
              +       K       ILIP+F +S+L ++F IG LI LPFL ID++++ I++AMGM
Sbjct: 121 IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM 180

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MM+ P +ISLPFK++ F+L  GW L +  LV+SF
Sbjct: 181 MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF 214


>gi|15605291|ref|NP_220077.1| type III secretion system protein [Chlamydia trachomatis D/UW-3/CX]
 gi|76789299|ref|YP_328385.1| type III secretion system protein [Chlamydia trachomatis A/HAR-13]
 gi|166155652|ref|YP_001653907.1| type III secretion system protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|237802991|ref|YP_002888185.1| type III secretion system protein [Chlamydia trachomatis
           B/Jali20/OT]
 gi|237804913|ref|YP_002889067.1| type III secretion system protein [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|255311381|ref|ZP_05353951.1| type III secretion system protein [Chlamydia trachomatis 6276]
 gi|255317682|ref|ZP_05358928.1| type III secretion system protein [Chlamydia trachomatis 6276s]
 gi|3329003|gb|AAC68164.1| Yop proteins translocation protein R [Chlamydia trachomatis
           D/UW-3/CX]
 gi|76167829|gb|AAX50837.1| SctR [Chlamydia trachomatis A/HAR-13]
 gi|165931640|emb|CAP07216.1| type III secretion system, membrane protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|231273213|emb|CAX10126.1| type III secretion system, membrane protein [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231274225|emb|CAX11019.1| type III secretion system, membrane protein [Chlamydia trachomatis
           B/Jali20/OT]
 gi|296436096|gb|ADH18270.1| type III secretion system protein [Chlamydia trachomatis G/9768]
 gi|296437024|gb|ADH19194.1| type III secretion system protein [Chlamydia trachomatis G/11222]
 gi|296437956|gb|ADH20117.1| type III secretion system protein [Chlamydia trachomatis G/11074]
 gi|297140457|gb|ADH97215.1| type III secretion system protein [Chlamydia trachomatis G/9301]
          Length = 306

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 67/213 (31%), Positives = 121/213 (56%), Gaps = 11/213 (5%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            I   L+++P L++++T + + II   +LR  +G+   PP+ V+  +AL ++ YVM PT 
Sbjct: 93  VILLFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTG 152

Query: 104 DRSIEMGIQPLMNNQI-----------TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
                   + + ++ +           T   A+ +  EP   F+  NT +  +  F  ++
Sbjct: 153 VAMYNDAKKGIESSAVPRDLFSAEGAETVFVALNKSKEPLRSFLIKNTPKPQIQSFYKIS 212

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
             +       +    ++ I+IP+F++ +++ +FEIG LI LPF +ID++ A +++AM MM
Sbjct: 213 QKTFPPELRQQLTPSDFMIIIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQMM 272

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ML P SISLP K++  V++DGW+LL+E L+ SF
Sbjct: 273 MLSPLSISLPLKLLLVVMVDGWTLLLEGLMISF 305


>gi|332294877|ref|YP_004436800.1| flagellar biosynthetic protein FliP [Thermodesulfobium narugense
           DSM 14796]
 gi|332177980|gb|AEE13669.1| flagellar biosynthetic protein FliP [Thermodesulfobium narugense
           DSM 14796]
          Length = 248

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 95/244 (38%), Positives = 147/244 (60%), Gaps = 6/244 (2%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSIS--TWIVRTFGIFTILSIAPILLIMVTC 61
           + FF   L+        ++  ++       S +     ++   I TIL+ AP+LL+M T 
Sbjct: 7   FIFFIALLIIFNFNNISNAAPNINIDLGAGSPNDIANSLKVLFILTILAFAPLLLLMTTS 66

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F R +IVF  LR  +G+  + P  +II L+LF+T ++M+P + +  +    P    QIT 
Sbjct: 67  FLRLVIVFGFLRNALGIQQIIPGQIIIGLSLFLTLFIMTPIIQKIEQDAYTPYQKGQITF 126

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181
             AI+R   P   FM +NTR+ DLSL ++++ +   N      + I   ++I +F++SEL
Sbjct: 127 QDAIERGYIPLRDFMLHNTRKSDLSLMIELSRTPRPN----SVNEIAPTVVISAFVLSEL 182

Query: 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241
           + SF IG +I LPF+IID+ VA+I+M+MGMMM+PP  ISLP K++ FVL DGWSLLV++L
Sbjct: 183 KTSFIIGIVIYLPFVIIDLAVASILMSMGMMMIPPVMISLPLKILLFVLADGWSLLVKSL 242

Query: 242 VKSF 245
           + SF
Sbjct: 243 IASF 246


>gi|332159962|ref|YP_004296539.1| type III secretion apparatus protein, YscR/HrcR family [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325664192|gb|ADZ40836.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330862413|emb|CBX72572.1| virulence protein yscR [Yersinia enterocolitica W22703]
          Length = 216

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 77/193 (39%), Positives = 117/193 (60%), Gaps = 2/193 (1%)

Query: 56  LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRSIEMGIQPL 114
           ++M T F +  IVFS+LR  +G+  VPPN+ I  LAL +T ++M+P  LD    +  +PL
Sbjct: 24  MVMGTSFLKLSIVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVHARLQDEPL 83

Query: 115 MNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILI 173
            N+       I   A EP+  F++ NT    +  F D+  +                IL+
Sbjct: 84  PNDLGALLYHIDEHALEPYRDFLQRNTDAAQVHFFNDIVQTKWPVRYRDTIKPNSLLILM 143

Query: 174 PSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDG 233
           P+F +S+L  +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK++ F+LIDG
Sbjct: 144 PAFTLSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMVSPITISLPFKLLIFILIDG 203

Query: 234 WSLLVENLVKSFI 246
           W LL+  LV S++
Sbjct: 204 WGLLLGQLVGSYL 216


>gi|318607487|emb|CBY28985.1| type III secretion inner membrane protein
           (YscR,SpaR,HrcR,EscR,homologous to flagellar export
           components) [Yersinia enterocolitica subsp. palearctica
           Y11]
          Length = 216

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 76/193 (39%), Positives = 116/193 (60%), Gaps = 2/193 (1%)

Query: 56  LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT-LDRSIEMGIQPL 114
           ++M T F +  IV S+LR  +G+  VPPN+ I  LAL +T ++M+P  LD    +  +PL
Sbjct: 24  MVMGTSFLKLSIVLSLLRNALGVQQVPPNIAIYGLALVLTIFIMAPVGLDVHARLQDEPL 83

Query: 115 MNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILI 173
            N+       I   A EP+  F++ NT    +  F D+  +                IL+
Sbjct: 84  PNDLGALLYHIDEHALEPYRDFLQRNTDAAQVHFFNDIVQTKWPVRYRDTIKPNSLLILM 143

Query: 174 PSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDG 233
           P+F +S+L  +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK++ F+LIDG
Sbjct: 144 PAFTLSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMVSPITISLPFKLLIFILIDG 203

Query: 234 WSLLVENLVKSFI 246
           W LL+  LV S++
Sbjct: 204 WGLLLGQLVGSYL 216


>gi|255348943|ref|ZP_05380950.1| type III secretion system protein [Chlamydia trachomatis 70]
 gi|255503482|ref|ZP_05381872.1| type III secretion system protein [Chlamydia trachomatis 70s]
 gi|255507160|ref|ZP_05382799.1| type III secretion system protein [Chlamydia trachomatis D(s)2923]
 gi|289525607|emb|CBJ15085.1| type III secretion system, membrane protein [Chlamydia trachomatis
           Sweden2]
 gi|296435168|gb|ADH17346.1| type III secretion system protein [Chlamydia trachomatis E/150]
 gi|296438888|gb|ADH21041.1| type III secretion system protein [Chlamydia trachomatis E/11023]
          Length = 306

 Score =  165 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 67/213 (31%), Positives = 121/213 (56%), Gaps = 11/213 (5%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            I   L+++P L++++T + + II   +LR  +G+   PP+ V+  +AL ++ YVM PT 
Sbjct: 93  VILLFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTG 152

Query: 104 DRSIEMGIQPLMNNQI-----------TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
                   + + ++ +           T   A+ +  EP   F+  NT +  +  F  ++
Sbjct: 153 VAMYNDAKKGIESSAVPRDLFSAEGAETVFVALNKSKEPLRSFLIKNTPKPQIQSFYKIS 212

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
             +       +    ++ I+IP+F++ +++ +FEIG LI LPF +ID++ A +++AM MM
Sbjct: 213 QKTFPPELRQQLTPSDFMIIIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQMM 272

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ML P SISLP K++  V++DGW+LL+E L+ SF
Sbjct: 273 MLSPLSISLPLKLLLVVMVDGWTLLLEGLMISF 305


>gi|166154777|ref|YP_001654895.1| type III secretion system protein [Chlamydia trachomatis 434/Bu]
 gi|301336052|ref|ZP_07224296.1| type III secretion system protein [Chlamydia trachomatis L2tet1]
 gi|165930765|emb|CAP04262.1| type III secretion system, membrane protein [Chlamydia trachomatis
           434/Bu]
          Length = 306

 Score =  165 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 67/213 (31%), Positives = 121/213 (56%), Gaps = 11/213 (5%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            I   L+++P L++++T + + II   +LR  +G+   PP+ V+  +AL ++ YVM PT 
Sbjct: 93  VILLFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTG 152

Query: 104 DRSIEMGIQPLMNNQI-----------TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
                   + + ++ +           T   A+ +  EP   F+  NT +  +  F  ++
Sbjct: 153 VAMYHDAKKGIESSAVPRDLFSAEGAETVFVALNKSKEPLRSFLIKNTPKPQIQSFYKIS 212

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
             +       +    ++ I+IP+F++ +++ +FEIG LI LPF +ID++ A +++AM MM
Sbjct: 213 QKTFPPELRQQLTPSDFMIIIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQMM 272

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ML P SISLP K++  V++DGW+LL+E L+ SF
Sbjct: 273 MLSPLSISLPLKLLLVVMVDGWTLLLEGLMISF 305


>gi|297748692|gb|ADI51238.1| type III secretion inner membrane protein SctR [Chlamydia
           trachomatis D-EC]
 gi|297749572|gb|ADI52250.1| type III secretion inner membrane protein SctR [Chlamydia
           trachomatis D-LC]
          Length = 309

 Score =  165 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 67/213 (31%), Positives = 121/213 (56%), Gaps = 11/213 (5%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
            I   L+++P L++++T + + II   +LR  +G+   PP+ V+  +AL ++ YVM PT 
Sbjct: 96  VILLFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTG 155

Query: 104 DRSIEMGIQPLMNNQI-----------TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
                   + + ++ +           T   A+ +  EP   F+  NT +  +  F  ++
Sbjct: 156 VAMYNDAKKGIESSAVPRDLFSAEGAETVFVALNKSKEPLRSFLIKNTPKPQIQSFYKIS 215

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
             +       +    ++ I+IP+F++ +++ +FEIG LI LPF +ID++ A +++AM MM
Sbjct: 216 QKTFPPELRQQLTPSDFMIIIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANVLVAMQMM 275

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ML P SISLP K++  V++DGW+LL+E L+ SF
Sbjct: 276 MLSPLSISLPLKLLLVVMVDGWTLLLEGLMISF 308


>gi|284007639|emb|CBA73298.1| type III secretion inner membrane protein YscR,SpaR,HrcR,EscR
           [Arsenophonus nasoniae]
          Length = 209

 Score =  165 bits (419), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 71/208 (34%), Positives = 118/208 (56%), Gaps = 2/208 (0%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   +   LSI P+  +M T F +  IV S+LR  +G+  +PPN+ I  LAL +T + M
Sbjct: 1   MQLIVVLFCLSIMPLFAVMGTSFLKISIVLSMLRNALGIQQIPPNMAIYGLALILTLFTM 60

Query: 100 SPT-LDRSIEMGIQPLMNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHSSHR 157
           +P        +  QP+  N +     I      P+  F++ NT E+ +  F  + +    
Sbjct: 61  APVGFAIRDNIKAQPIDWNSVNSMEQIDSSVITPYRDFLKKNTSEEQIKFFTQIGYKIWP 120

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
               T        +++P+F +S+L  +F+IGFLI LPF+ ID+IV+ +++AMGMMM+ P 
Sbjct: 121 KQYQTSLSPNSLLVMVPAFTMSQLIAAFKIGFLIYLPFVAIDLIVSNVLLAMGMMMVSPM 180

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +I+LPFK++ F+L+ GW  L+  L+ SF
Sbjct: 181 TIALPFKLLIFILMGGWDKLIGQLMVSF 208


>gi|167572947|ref|ZP_02365821.1| type III secretion system protein [Burkholderia oklahomensis C6786]
          Length = 216

 Score =  165 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 68/210 (32%), Positives = 119/210 (56%), Gaps = 2/210 (0%)

Query: 38  WIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFY 97
             ++   +   LSI P+L+++ T F +  +VF++LR  +G   +PPN+ +  LAL +T +
Sbjct: 6   QPLQLIAVLFALSILPLLVVLGTSFLKLSVVFALLRNALGTQQIPPNIALHGLALVLTMF 65

Query: 98  VMSPTLDRSIEM-GIQPLMNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHSS 155
           VM+P      +     P+  +    T  +++    P+  F+  NT    +  F D+ H +
Sbjct: 66  VMAPVGLAIQDNLAAHPVRIDDKDFTQQVEKTILAPYRAFLERNTAPDQVRFFADVGHRT 125

Query: 156 HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
                  +       +L+P+F +S+L  +F+IG L+ LPF+ ID+IV+ +++AMGMMM+ 
Sbjct: 126 WPEPYRNRIPDDSLIVLLPAFTVSQLIEAFKIGLLLFLPFIAIDLIVSNVLLAMGMMMVS 185

Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           P +I+LP K++ FVLI GW  L+  L+ SF
Sbjct: 186 PMTIALPLKLLVFVLIHGWEKLIGQLLLSF 215


>gi|16760492|ref|NP_456109.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29141748|ref|NP_805090.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213416630|ref|ZP_03349774.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213426016|ref|ZP_03358766.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213581367|ref|ZP_03363193.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213647287|ref|ZP_03377340.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213854184|ref|ZP_03382716.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289827206|ref|ZP_06545929.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25316659|pir||AI0696 probable type III secretion protein yscR [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16502788|emb|CAD01946.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29137376|gb|AAO68939.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 215

 Score =  165 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 76/214 (35%), Positives = 125/214 (58%), Gaps = 1/214 (0%)

Query: 33  LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
           +S+    ++  GI  +LSI P++++M T F +  +VFSILR  +G+  VPPN+ +   AL
Sbjct: 1   MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL 60

Query: 93  FMTFYVMSPTLDRSIEM-GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
            ++ ++M PTL    E      +       +    +   P+  F++ N+ EK+ + F ++
Sbjct: 61  VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNL 120

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
              +       K       ILIP+F +S+L ++F IG LI LPFL ID++++ I++AMGM
Sbjct: 121 IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM 180

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MM+ P +ISLPFK++ F+L  GW L +  LV+SF
Sbjct: 181 MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF 214


>gi|294141001|ref|YP_003556979.1| type III secretion system EscR protein [Shewanella violacea DSS12]
 gi|293327470|dbj|BAJ02201.1| type III secretion system EscR protein [Shewanella violacea DSS12]
          Length = 216

 Score =  165 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 72/215 (33%), Positives = 123/215 (57%), Gaps = 2/215 (0%)

Query: 33  LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
           +S+    V+   +   LSI P+  +M T F +  IV S+LR  +G+  +PPN+ I  L+L
Sbjct: 1   MSVLDNPVQLIILLFCLSILPLFAVMGTSFLKLSIVLSMLRNALGIQQIPPNMAIYGLSL 60

Query: 93  FMTFYVMSPTLDRSIEM-GIQPLMNNQITETTAIQRVAE-PFWVFMRNNTREKDLSLFMD 150
            +T ++M+P      +   + P++ +       +  +A  P+  F+  NT +  L  F +
Sbjct: 61  ILTLFIMAPIGMEINDNLKVHPIVFDSANIIEQVNTLAIIPYRDFLEKNTSKTQLDFFAN 120

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           + H +  +            +++P+F +S+L  +F+IG LI LPF+ ID+IV+ I++AMG
Sbjct: 121 IGHKTWPDKYQDVLSKDSLFVMLPAFTMSQLIEAFKIGLLIYLPFVAIDLIVSNILLAMG 180

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMM+ P +ISLPFK++ F+L+ GW  LV  L+ SF
Sbjct: 181 MMMVSPMTISLPFKLLIFILMGGWEKLVSQLMVSF 215


>gi|167568050|ref|ZP_02360966.1| type III secretion system protein [Burkholderia oklahomensis EO147]
          Length = 216

 Score =  165 bits (418), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 68/210 (32%), Positives = 119/210 (56%), Gaps = 2/210 (0%)

Query: 38  WIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFY 97
             ++   +   LSI P+L+++ T F +  +VF++LR  +G   +PPN+ +  LAL +T +
Sbjct: 6   QPLQLIAVLFALSILPLLVVLGTSFLKLSVVFALLRNALGTQQIPPNIALHGLALVLTMF 65

Query: 98  VMSPTLDRSIEM-GIQPLMNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHSS 155
           VM+P      +     P+  +    T  +++    P+  F+  NT    +  F D+ H +
Sbjct: 66  VMAPVGLAIQDNLAAHPVGIDDKDFTQQVEKTILAPYRAFLERNTAPDQVRFFADVGHRT 125

Query: 156 HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
                  +       +L+P+F +S+L  +F+IG L+ LPF+ ID+IV+ +++AMGMMM+ 
Sbjct: 126 WPEPYRNRIPDDSLIVLLPAFTVSQLIEAFKIGLLLFLPFIAIDLIVSNVLLAMGMMMVS 185

Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           P +I+LP K++ FVLI GW  L+  L+ SF
Sbjct: 186 PMTIALPLKLLVFVLIHGWEKLIGQLLLSF 215


>gi|168822289|ref|ZP_02834289.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194445968|ref|YP_002040671.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|205352865|ref|YP_002226666.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207857075|ref|YP_002243726.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|194404631|gb|ACF64853.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|205272646|emb|CAR37556.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205341300|gb|EDZ28064.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|206708878|emb|CAR33208.1| putative type III secretion protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|309243393|gb|ADO51969.1| SsaR [Salmonella enterica subsp. enterica serovar Gallinarum]
 gi|320086102|emb|CBY95876.1| Virulence protein yscR [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|326627937|gb|EGE34280.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 215

 Score =  165 bits (418), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 77/214 (35%), Positives = 125/214 (58%), Gaps = 1/214 (0%)

Query: 33  LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
           +S+    ++  GI  +LSI P++++M T F +  +VFSILR  +G+  VPPN+ +  LAL
Sbjct: 1   MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL 60

Query: 93  FMTFYVMSPTLDRSIEM-GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
            ++ ++M PTL    E      +       +    +   P+  F++ N+ EK+ + F  +
Sbjct: 61  VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRSL 120

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
              +       K       ILIP+F +S+L ++F IG LI LPFL ID++++ I++AMGM
Sbjct: 121 IKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGM 180

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MM+ P +ISLPFK++ F+L  GW L +  LV+SF
Sbjct: 181 MMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF 214


>gi|218887527|ref|YP_002436848.1| type III secretion system protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758481|gb|ACL09380.1| Yop virulence translocation R [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 216

 Score =  165 bits (417), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 69/214 (32%), Positives = 124/214 (57%), Gaps = 3/214 (1%)

Query: 35  ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFM 94
             T  +       +L +AP  L+MVT + + ++V S++R  +G+  VPP +V+  LA+ +
Sbjct: 2   TGTMPLYYIAGMALLGLAPFFLMMVTSYVKIVVVTSLVRNALGVQQVPPAMVMNGLAIIL 61

Query: 95  TFYVMSPTLDRSIEMGIQPLMNNQITETTA---IQRVAEPFWVFMRNNTREKDLSLFMDM 151
           + ++M+P ++ ++++     ++ Q         + R + P   F+  N  +K ++ FM  
Sbjct: 62  SIFIMAPMVESTLDILKTVRVSEQPEPREVVELLDRASPPLRDFLSRNADDKVITAFMGT 121

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           A                  IL+P+F ISEL ++F+IGFL+ LPF+ ID+I++ I++AMGM
Sbjct: 122 AKRIWPKERHDTIRRENLLILVPAFTISELTKAFQIGFLLYLPFVAIDLIISNILLAMGM 181

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MM+ P +ISLPFK++ FV +DGW  + + L+ S+
Sbjct: 182 MMVSPMTISLPFKLLLFVTLDGWLKISQGLLLSY 215


>gi|167841181|ref|ZP_02467865.1| type III secretion system protein [Burkholderia thailandensis
           MSMB43]
          Length = 216

 Score =  165 bits (417), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 69/215 (32%), Positives = 122/215 (56%), Gaps = 2/215 (0%)

Query: 33  LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
           +S+    V+   +   LSI P+L+++ + F +  +VF++LR  +G   +PPN+ +  LAL
Sbjct: 1   MSVLDQPVQLIVVLFALSILPLLMVLGSSFLKLAVVFALLRNALGTQQIPPNIALYGLAL 60

Query: 93  FMTFYVMSPTLDRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
            +T ++M+P      +   +    ++++         +  P+  F+  NT    +  F D
Sbjct: 61  VLTLFIMAPVGLAIQDNLAEHPVQLDDKQFTQQVETTILAPYRDFLARNTARAQVRFFAD 120

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           + H +       +       +LIP+F IS+L  +F+IG L+ LPF+ ID+IV+ +++AMG
Sbjct: 121 IGHRTWPEPYRNRIPDDSLIVLIPAFAISQLIEAFKIGLLLFLPFVAIDLIVSNVLLAMG 180

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMM+ P +I+LP K++ FVLI+GW  L+  LV SF
Sbjct: 181 MMMVSPMTIALPLKLLVFVLINGWEKLLGQLVLSF 215


>gi|89069801|ref|ZP_01157136.1| flagellar biosynthetic protein FliP [Oceanicola granulosus
           HTCC2516]
 gi|89044602|gb|EAR50718.1| flagellar biosynthetic protein FliP [Oceanicola granulosus
           HTCC2516]
          Length = 246

 Score =  165 bits (417), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 86/220 (39%), Positives = 136/220 (61%), Gaps = 4/220 (1%)

Query: 26  VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
            +++  D S++T  ++   + T+LS+ P L IM+TCFP  + V +ILR  +G+   PPN+
Sbjct: 30  TLSLGEDGSLATRSIQLLLLVTLLSLVPGLAIMITCFPFIVTVLAILRQAIGLQQSPPNM 89

Query: 86  VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDL 145
           +I++LALF+T++VM P    + E G  PL   + +   A      PF  FM        L
Sbjct: 90  LIVTLALFLTYFVMEPVFRAAWEAGGAPLAAGEASLEEAFAGAIAPFRTFMAARVDPSAL 149

Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
           +   D+  S+               +L+PSF++SE+ R+F++GFL+ LPFLIID++VA +
Sbjct: 150 ASLADLRGSAPPPAPEAAP----LSVLVPSFLLSEIERAFQVGFLLFLPFLIIDLVVAAV 205

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +M+MGMMM+PP  +SLPFK+ FFV+ DGW+L+ E LV+ +
Sbjct: 206 LMSMGMMMVPPAIVSLPFKLAFFVVADGWTLVAEALVRGY 245


>gi|304414276|ref|ZP_07395644.1| type III secretion system protein [Candidatus Regiella insecticola
           LSR1]
 gi|304283490|gb|EFL91886.1| type III secretion system protein [Candidatus Regiella insecticola
           LSR1]
          Length = 216

 Score =  165 bits (417), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 64/192 (33%), Positives = 109/192 (56%), Gaps = 2/192 (1%)

Query: 56  LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115
           ++M T F +  +VFS+LR  +G+  VPPN+ I   AL +T ++M+P      +      +
Sbjct: 24  MVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGFALVLTLFIMAPVGFDVYDRLQGEAL 83

Query: 116 NNQIT--ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILI 173
            + I        ++   P+  F+  NT  +  + F ++           K       I++
Sbjct: 84  PDDIGAFMQHIDEKALVPYRAFLVRNTSVEQTNFFAEIIKKDWPEKYRDKIKPDSLLIMM 143

Query: 174 PSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDG 233
           P+F +S+L  +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +ISLPFK++ F+++ G
Sbjct: 144 PAFTVSQLTEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMVSPMTISLPFKLLIFIMVGG 203

Query: 234 WSLLVENLVKSF 245
           W LL+  LV S+
Sbjct: 204 WHLLLGQLVGSY 215


>gi|323143897|ref|ZP_08078559.1| type III secretion apparatus protein, YscR/HrcR family
           [Succinatimonas hippei YIT 12066]
 gi|322416324|gb|EFY06996.1| type III secretion apparatus protein, YscR/HrcR family
           [Succinatimonas hippei YIT 12066]
          Length = 222

 Score =  164 bits (416), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 68/213 (31%), Positives = 123/213 (57%), Gaps = 4/213 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  +    +  ++ + P  L + T + + I+V  ++R  +G+  VPP +V+  LA+ ++ 
Sbjct: 8   SNPINLIFLIALMGLVPFFLTLATSYIKIIVVIYLIRNALGIQQVPPGMVLSGLAMILSI 67

Query: 97  YVMSPTLDRSIEMGIQPLMNNQITETTAI----QRVAEPFWVFMRNNTREKDLSLFMDMA 152
           +VM+P   ++ ++  Q  ++   T    +      V+ P   F+++NT E+ L+ F + A
Sbjct: 68  FVMAPVGVKTYDLLQQQDVSTVETSPYNVLEIADNVSGPLKDFLQHNTDERILNAFTNTA 127

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
                              +IPSF+ISEL ++F+IGFL+ LPF+ ID+I++ I++AMGMM
Sbjct: 128 QRIWPQEIHNVISKDSLIFIIPSFVISELTKAFQIGFLLYLPFIAIDLIISNILLAMGMM 187

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+ P +ISLPFK++ FV +DGW  L + L+ S+
Sbjct: 188 MVSPMTISLPFKLMLFVTLDGWLKLSQGLLYSY 220


>gi|317486826|ref|ZP_07945642.1| YscR/HrcR family type III secretion apparatus protein [Bilophila
           wadsworthia 3_1_6]
 gi|316921989|gb|EFV43259.1| YscR/HrcR family type III secretion apparatus protein [Bilophila
           wadsworthia 3_1_6]
          Length = 216

 Score =  164 bits (416), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 67/203 (33%), Positives = 125/203 (61%), Gaps = 3/203 (1%)

Query: 46  FTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDR 105
             +L +AP  L+MVT + + ++V S++R  +G+  VPP +V+  LA+ ++ ++M+P +  
Sbjct: 13  MALLGLAPFFLMMVTSYVKIVVVTSLVRNALGVQQVPPAMVMNGLAIILSLFIMAPMMMS 72

Query: 106 SIEMGIQPLMNNQITETTAI---QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT 162
           ++++  +  ++ + +    I    +++ P   F+ +NT +  L  FM  A          
Sbjct: 73  TMDIAGKLQISAEPSPKEVIGIVDKLSPPLRKFLSDNTEDGVLRAFMSTAKRIWPKEQHD 132

Query: 163 KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
           +       IL+P+F ISEL ++F++GFL+ LPF+ ID+I++ I++AMGMMM+ P +ISLP
Sbjct: 133 QISKDNMLILVPAFTISELTKAFQVGFLLYLPFIAIDLIISNILLAMGMMMVSPMTISLP 192

Query: 223 FKVIFFVLIDGWSLLVENLVKSF 245
           FK++ FV +DGW  + + L+ S+
Sbjct: 193 FKLLLFVTLDGWLKISQGLLLSY 215


>gi|33593240|ref|NP_880884.1| type III secretion system protein [Bordetella pertussis Tohama I]
 gi|29603234|emb|CAC79579.1| bscR [Bordetella pertussis Tohama I]
 gi|33563615|emb|CAE42516.1| putative type III secretion protein [Bordetella pertussis Tohama I]
 gi|332382649|gb|AEE67496.1| type III secretion system protein [Bordetella pertussis CS]
          Length = 223

 Score =  164 bits (416), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 67/204 (32%), Positives = 112/204 (54%), Gaps = 10/204 (4%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
            P++++M T F +  +V +++R  +G+  VPPN+ +  LAL ++ YVM+P + R      
Sbjct: 19  VPLIVVMTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHRIGTEVQ 78

Query: 112 QPLMNNQITETTA----------IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
                   + T A           +R   P   FM  N++      F+  A         
Sbjct: 79  ALTAQAGESGTAAPMALDAVLGVAERGVGPLRAFMLRNSQPAQRDFFLRTARHLWGEEAS 138

Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
                    +L P+F++SEL  +F++GFL+ LPF+IID+IV+ I++AMGMMM+ P +IS+
Sbjct: 139 RDLSEDNLLVLTPAFLVSELTAAFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVTISM 198

Query: 222 PFKVIFFVLIDGWSLLVENLVKSF 245
           P K+  FV++DGW+ L++ LV S+
Sbjct: 199 PLKLFLFVMVDGWTRLIQGLVLSY 222


>gi|16520044|ref|NP_444164.1| type III secretion system protein [Sinorhizobium fredii NGR234]
 gi|2494571|sp|P55720|Y4YL_RHISN RecName: Full=Probable translocation protein y4yL
 gi|2182737|gb|AAB91951.1| innermembrane protein RhcR; component of type III secretion
           apparatus [Sinorhizobium fredii NGR234]
          Length = 222

 Score =  164 bits (416), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 69/192 (35%), Positives = 113/192 (58%), Gaps = 2/192 (1%)

Query: 56  LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115
           ++  T F +  +V  ++R  +G  ++PPN+V+ + AL +T +V +P  +++ +    P +
Sbjct: 25  VVTTTAFVKVSVVLFLVRNALGTQTIPPNIVLYAAALILTMFVSAPVAEQTYDRITDPRL 84

Query: 116 NNQ--ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILI 173
             Q       A +  ++P    ++  T E+    F+                  ++ IL+
Sbjct: 85  RYQSLDDWAEAAKAGSQPLLEHLKKFTNEEQRRFFLSSTEKVWPEEMRAGVTADDFAILV 144

Query: 174 PSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDG 233
           PSF+ISEL+R+FEIGFL+ LPF++ID+IV TI+MAMGM M+ PT I++PFK+  FV IDG
Sbjct: 145 PSFLISELKRAFEIGFLLYLPFIVIDLIVTTILMAMGMSMVSPTIIAVPFKLFLFVAIDG 204

Query: 234 WSLLVENLVKSF 245
           WS L+  LV S+
Sbjct: 205 WSRLMHGLVLSY 216


>gi|268592375|ref|ZP_06126596.1| type III secretion apparatus protein, YscR/HrcR family [Providencia
           rettgeri DSM 1131]
 gi|291312161|gb|EFE52614.1| type III secretion apparatus protein, YscR/HrcR family [Providencia
           rettgeri DSM 1131]
          Length = 232

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 58/209 (27%), Positives = 113/209 (54%), Gaps = 2/209 (0%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +    I    ++ P ++   TC+ +  IV  ++R  MG+  VP  +V+  +AL ++ +VM
Sbjct: 19  IPLLAIIAFSTLLPFVIAAGTCYLKISIVLIMVRNAMGVQQVPSTMVLNGIALLLSIFVM 78

Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
            P L        Q  ++  N  +    ++     +  +++  +  + ++ F  +      
Sbjct: 79  MPVLQDVNNHMRQEQVDFSNVESIDNFVENGLGGYKSYLKKYSDPQLVTFFESIQQGRSE 138

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
                         L+P++ +SE++ +FEIGF I LPF+++D+++++I++A+GMMM+ P 
Sbjct: 139 EEITADEGKATLFSLLPAYALSEIKSAFEIGFYIYLPFVVVDLVISSILLALGMMMMSPV 198

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +IS+P K+I FV IDGWSL+ + LV  +I
Sbjct: 199 TISIPVKLILFVAIDGWSLISKGLVMQYI 227


>gi|33596843|ref|NP_884486.1| type III secretion system protein [Bordetella parapertussis 12822]
 gi|33600617|ref|NP_888177.1| type III secretion system protein [Bordetella bronchiseptica RB50]
 gi|6708104|gb|AAF25801.1|AF172245_3 BscR [Bordetella bronchiseptica]
 gi|33568216|emb|CAE32129.1| putative type III secretion protein [Bordetella bronchiseptica
           RB50]
 gi|33573544|emb|CAE37535.1| putative type III secretion protein [Bordetella parapertussis]
          Length = 223

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 67/204 (32%), Positives = 113/204 (55%), Gaps = 10/204 (4%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI 111
            P++++M T F +  +V +++R  +G+  VPPN+ +  LAL ++ YVM+P + R      
Sbjct: 19  VPLIVVMTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHRIGTEVQ 78

Query: 112 QPLMNNQITETTA----------IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
                   + T A          ++R   P   FM  N++      F+  A         
Sbjct: 79  ALTAQAGESGTAAPMALDAVLGVVERGVAPLRAFMLRNSQPAQRDFFLRTARHLWGEEAS 138

Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
                    +L P+F++SEL  +F++GFL+ LPF+IID+IV+ I++AMGMMM+ P +IS+
Sbjct: 139 RDLSEDNLLVLTPAFLVSELTAAFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVTISM 198

Query: 222 PFKVIFFVLIDGWSLLVENLVKSF 245
           P K+  FV++DGW+ L++ LV S+
Sbjct: 199 PLKLFLFVMVDGWTRLIQGLVLSY 222


>gi|170738279|ref|YP_001779539.1| Yop virulence translocation R [Burkholderia cenocepacia MC0-3]
 gi|169820467|gb|ACA95049.1| Yop virulence translocation R [Burkholderia cenocepacia MC0-3]
          Length = 216

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 60/206 (29%), Positives = 117/206 (56%), Gaps = 2/206 (0%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
                  + + P + ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ +T YVM+P
Sbjct: 10  LLIAVIAIGLIPFVAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVTLYVMAP 69

Query: 102 TLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
               + +      + N   E    A      PF  F++ ++RE++   FM  AH     +
Sbjct: 70  IGMSAADTMRHEQLANSPAEIMVQAFGASQAPFRTFLKAHSRERERLFFMRSAHVIWPES 129

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                   +  +L P+F ++EL  +F+IGFL+ + F+I+D ++A +++AMG+  + PT++
Sbjct: 130 LANALHEDDLIVLAPAFTLTELADAFKIGFLLYIAFIIVDFVIANVLLAMGLNQIQPTNV 189

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++PFK++ FV +DGWS L+  L+ ++
Sbjct: 190 AIPFKLLLFVAMDGWSALIHGLILTY 215


>gi|307947532|ref|ZP_07662865.1| type III secretion apparatus protein, YscR/HrcR family [Roseibium
           sp. TrichSKD4]
 gi|307769350|gb|EFO28578.1| type III secretion apparatus protein, YscR/HrcR family [Roseibium
           sp. TrichSKD4]
          Length = 217

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 69/206 (33%), Positives = 121/206 (58%), Gaps = 2/206 (0%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
              +   ++  PI+ + VT F +  +V  I+R   G+ ++PPN+V+  LA+ ++ Y+  P
Sbjct: 11  VIALVFFMAFLPIIAVTVTAFAKIAVVLMIVRNATGLQNLPPNVVMYGLAIILSAYIAFP 70

Query: 102 TLDRSIEMGIQ--PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
            +  S E   Q  P +        A Q  + P   F++ +  EK  + F+        + 
Sbjct: 71  VVADSFERVQQTVPELETAQDWIKAGQEGSAPLKEFLKKHADEKQTAFFLASTRKIWGDK 130

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                   +  IL+PSF++SEL ++FEIGFL+ LPF+ ID+IV T+++A+GMMM+PP++I
Sbjct: 131 YAQDATPEDLAILVPSFLLSELTKAFEIGFLLFLPFIAIDIIVTTVLIALGMMMVPPSTI 190

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           S+PFK++ FV ++GWS +V+ L+ ++
Sbjct: 191 SIPFKLMLFVFVEGWSKIVQGLLLTY 216


>gi|19749328|gb|AAL98698.1| Y4yL [Sinorhizobium fredii]
 gi|52631921|gb|AAU85371.1| RhcR [Sinorhizobium fredii]
          Length = 222

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 69/192 (35%), Positives = 114/192 (59%), Gaps = 2/192 (1%)

Query: 56  LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115
           ++  T F +  +V  ++R  +G  ++PPN+V+ + AL +T +V +P  +++ +    P +
Sbjct: 25  VVTTTAFVKVSVVLFLVRNALGTQTIPPNIVLYAAALILTMFVSAPIAEQTYDRITDPRL 84

Query: 116 NNQ--ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILI 173
             Q       A +  ++P    ++  T E+    F+             +    ++ IL+
Sbjct: 85  RYQSLDDWAEAAKAGSQPLLEHLKKFTNEEQRRFFLSSTEKVWPEEMRARVTADDFAILV 144

Query: 174 PSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDG 233
           PSF+ISEL+R+FEIGFL+ LPF++ID+IV TI+MAMGM M+ PT I++PFK+  FV IDG
Sbjct: 145 PSFLISELKRAFEIGFLLYLPFIVIDLIVTTILMAMGMSMVSPTIIAVPFKLFLFVAIDG 204

Query: 234 WSLLVENLVKSF 245
           WS L+  LV S+
Sbjct: 205 WSRLMHGLVLSY 216


>gi|312884595|ref|ZP_07744299.1| type III secretion system protein [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367907|gb|EFP95455.1| type III secretion system protein [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 216

 Score =  164 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 68/208 (32%), Positives = 119/208 (57%), Gaps = 2/208 (0%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   +   LS+ P+  +M T F +  IV S+LR  +G+  +PPN+ I  LAL +T + M
Sbjct: 8   IQLIVVLFCLSLLPLFAVMGTSFLKLSIVLSMLRNALGIQQIPPNMAIYGLALILTMFTM 67

Query: 100 SPTLDRS-IEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
           +P        +   P+          I ++V  P++ F+ +NT +K +  F  + H    
Sbjct: 68  APVGMAIRDNLAAHPVEWASPDVFHQISEQVIAPYYKFLSHNTSDKQIQFFSQIGHKIWP 127

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
                +       +++P+F +S+L  +F+IGFL+ LPF+ ID++V+ I++AMGMMM+ P 
Sbjct: 128 EQYQHELSKESLLVMVPAFTMSQLIEAFKIGFLLYLPFVAIDLVVSNILLAMGMMMVSPM 187

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +I+LPFK++ F+L+ GW  L+  L+ SF
Sbjct: 188 TIALPFKLLIFILMGGWDKLIGQLMGSF 215


>gi|227820525|ref|YP_002824496.1| type III secretion system protein [Sinorhizobium fredii NGR234]
 gi|227339524|gb|ACP23743.1| translocation protein in type III secretion RhcR [Sinorhizobium
           fredii NGR234]
          Length = 217

 Score =  164 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 71/215 (33%), Positives = 116/215 (53%), Gaps = 2/215 (0%)

Query: 33  LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
              +T ++    I + + + P+ ++ +T F +  IV  ++R  +G+   PPNLV+  +AL
Sbjct: 2   GETTTNLIPIIIIVSTIGLIPLAVVTMTGFLKISIVLFLIRNALGIQQSPPNLVLYGVAL 61

Query: 93  FMTFYVMSPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
            +T YV +P +          Q  M +  +   A  ++  P    +   T E +   F+ 
Sbjct: 62  ILTVYVTTPLVGEMYRTLSSEQVDMQSMDSMVRAANQLRAPLQAHLTRYTDENERQFFLQ 121

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
                               IL+P+F+ SEL R+FEIGFL+ LPFL+ID+IV+T++MAMG
Sbjct: 122 ATERIWSEEARASVKTDSLLILVPAFVSSELTRAFEIGFLLYLPFLVIDLIVSTVLMAMG 181

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMM+ PT IS+P K+  FV ++GWS L+  L+ S+
Sbjct: 182 MMMVSPTLISIPLKIFLFVAVNGWSRLMHGLILSY 216


>gi|313634413|gb|EFS01000.1| flagellar biosynthesis protein FliP [Listeria seeligeri FSL N1-067]
          Length = 255

 Score =  164 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 69/241 (28%), Positives = 130/241 (53%), Gaps = 6/241 (2%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
           + F  +F      V A+S L  +     D   S+  V  F + TILS++  +++M T F 
Sbjct: 18  FVFSLIFFWPGTSVHAESWLDSLGVNGTDGVNSS--VALFVLVTILSLSASIVLMFTHFT 75

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
             IIV  + R G+G  ++PPN V++ LALF++ ++M P +    +   +P    + + + 
Sbjct: 76  YCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQTEEWSASK 135

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
                      ++  NT + D+++ +     +     +TK +      L+P+F+++++ +
Sbjct: 136 VWDETKPLLTKYVAENTYKHDINMML----KAEGEEPVTKKEDAPLMALMPAFILTQITQ 191

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
            F  G  I L F+ ID+IV+T++M +GMMM+PP +ISLPFK++ F+ I G+ L+   + +
Sbjct: 192 GFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVFIFIGGYGLITNMIFQ 251

Query: 244 S 244
           +
Sbjct: 252 T 252


>gi|317407761|gb|EFV87688.1| type III secretion protein [Achromobacter xylosoxidans C54]
          Length = 230

 Score =  164 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 119/223 (53%), Gaps = 17/223 (7%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +      +++++ P+ ++M T F +  +V  ++R  +G+   PPN+ +  LA+ ++ YVM
Sbjct: 7   ITLALALSMVALVPLAVVMTTSFLKISVVLVLVRNALGIQQAPPNMALYGLAVILSAYVM 66

Query: 100 SPTLDRSIEM----GIQPLMNNQITETTAIQ-------------RVAEPFWVFMRNNTRE 142
           +P   +           P   +    T   Q             R AEP   FM  N+R 
Sbjct: 67  APVGYQISAELRAVASAPATESGAPGTQGAQAGSSLENFLDVAARAAEPMRGFMLKNSRA 126

Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202
           +    F+  A               +  +L+P+F++SEL  +F++GFL+ LPF++ID+IV
Sbjct: 127 EQRDFFVRTARQLWGPEQAAALRETDLIVLVPAFLLSELTVAFQVGFLLYLPFVVIDLIV 186

Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           + I+MAMGMMM+ P +IS+P K+  FV++DGWS L++ LV S+
Sbjct: 187 SNILMAMGMMMVSPVTISMPLKLFLFVMVDGWSRLIQGLVLSY 229


>gi|191166033|ref|ZP_03027869.1| type III secretion apparatus protein EpaP [Escherichia coli B7A]
 gi|190903981|gb|EDV63694.1| type III secretion apparatus protein EpaP [Escherichia coli B7A]
          Length = 221

 Score =  164 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 60/213 (28%), Positives = 122/213 (57%), Gaps = 4/213 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  +    I ++ ++ P ++   TCF +F IVF I+R  +G+  VP N+ +  +AL ++ 
Sbjct: 2   SNSISLIAILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61

Query: 97  YVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-- 152
           +VM P             +  NN  +    ++     +  ++  ++  + +S F  +   
Sbjct: 62  FVMMPVGKEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKHSEPELVSFFEKIQKV 121

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
           +SS  N +I  +D+I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM
Sbjct: 122 NSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+ P +IS P K+I FV +DGW++L + L+  +
Sbjct: 182 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214


>gi|315301906|ref|ZP_07872919.1| flagellar biosynthesis protein FliP [Listeria ivanovii FSL F6-596]
 gi|313629722|gb|EFR97842.1| flagellar biosynthesis protein FliP [Listeria ivanovii FSL F6-596]
          Length = 255

 Score =  164 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 68/241 (28%), Positives = 130/241 (53%), Gaps = 6/241 (2%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
           + F  +F      V A+S L  +     D   S+  V  F + T+LS++  +++M T F 
Sbjct: 18  FVFSLIFFWPGTSVHAESWLDSLGVNGTDGVNSS--VALFVLVTVLSLSASIVLMFTHFT 75

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
             IIV  + R G+G  ++PPN V++ LALF++ ++M P +    +   +P    + + + 
Sbjct: 76  YCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQTEEWSASK 135

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
                      ++  NT + D+++ +     +     +TK +      L+P+F+++++ +
Sbjct: 136 VWDETKPLLTKYVAENTYKHDINMML----KAEGEKPVTKKEDAPLMALMPAFILTQITQ 191

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
            F  G  I L F+ ID+IV+T++M +GMMM+PP +ISLPFK++ F+ I G+ L+   + +
Sbjct: 192 GFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVFIFIGGYGLITNMIFQ 251

Query: 244 S 244
           +
Sbjct: 252 T 252


>gi|289433954|ref|YP_003463826.1| flagellar biosynthesis protein FliP [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289170198|emb|CBH26738.1| flagellar biosynthesis protein FliP [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|313639091|gb|EFS04067.1| flagellar biosynthesis protein FliP [Listeria seeligeri FSL S4-171]
          Length = 255

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 69/241 (28%), Positives = 130/241 (53%), Gaps = 6/241 (2%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
           + F  +F      V A+S L  +     D   S+  V  F + TILS++  +++M T F 
Sbjct: 18  FVFSLIFFWPGTSVHAESWLDSLGVNGTDGVNSS--VALFVLVTILSLSASIVLMFTHFT 75

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
             IIV  + R G+G  ++PPN V++ LALF++ ++M P +    +   +P    + + + 
Sbjct: 76  YCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQTEEWSASK 135

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
                      ++  NT + D+++ +     +     +TK +      L+P+F+++++ +
Sbjct: 136 VWDETKPLLTKYVAENTYKHDINMML----KAEGEKPVTKKEDAPLMALMPAFILTQITQ 191

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
            F  G  I L F+ ID+IV+T++M +GMMM+PP +ISLPFK++ F+ I G+ L+   + +
Sbjct: 192 GFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVFIFIGGYGLITNMIFQ 251

Query: 244 S 244
           +
Sbjct: 252 T 252


>gi|13475305|ref|NP_106869.1| type III secretion system protein [Mesorhizobium loti MAFF303099]
 gi|14026056|dbj|BAB52655.1| translocation protein in type III secretion system; HrcR
           [Mesorhizobium loti MAFF303099]
          Length = 221

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 72/209 (34%), Positives = 123/209 (58%), Gaps = 2/209 (0%)

Query: 39  IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
           I+    +   L +  ++++  T F +  +V  ++R  +G  ++PPN+ + ++AL +T ++
Sbjct: 8   ILALLAVTAGLGLLVLVVVTTTAFVKVSVVLFLVRNALGTQTIPPNIALYAVALILTMFL 67

Query: 99  MSPTLDRSIEMGIQPLMNNQI--TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
            +P ++++ +    P ++ Q      +A +  +EP    ++  T E+    F+       
Sbjct: 68  SAPVVEQTYDRMTDPKLHYQTFDDWVSAAKSGSEPLRDHLKKFTNEEQRQFFLSSTEKVW 127

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
                 K    +  IL+PSF+ISEL+R+FEIGFL+ LPF++ID+IV TI+MAMGM M+ P
Sbjct: 128 PAEMRAKATVDDLSILVPSFLISELKRAFEIGFLLYLPFIVIDLIVTTILMAMGMSMVSP 187

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           T IS+PFK+  FV IDGWS L+  LV S+
Sbjct: 188 TLISVPFKLFVFVAIDGWSKLMHGLVLSY 216


>gi|293416351|ref|ZP_06658990.1| YscR/HrcR family type III secretion apparatus protein [Escherichia
           coli B185]
 gi|291431707|gb|EFF04690.1| YscR/HrcR family type III secretion apparatus protein [Escherichia
           coli B185]
          Length = 220

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 119/211 (56%), Gaps = 4/211 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +    +    ++ P ++   TCF +F +VF ++R  +G+  VP N+V+  +AL ++ +VM
Sbjct: 5   ISLIALLAFSTLLPFIIASGTCFVKFSVVFIMMRNALGLQQVPSNMVLNGVALMLSAFVM 64

Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS--S 155
            P   ++++      +N  +  + +  ++     +  ++   + ++ ++ F D  H   S
Sbjct: 65  YPVTQQALDYYQNNSVNFRDADSVSDFVEHGLGRYREYLSRYSDKELVAFFEDAQHQRVS 124

Query: 156 HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
                  + +      L+P++ +SE++ +F I F + LPF+++D++++++++A+GMMM+ 
Sbjct: 125 REEALAAEGEQTSILSLLPAYALSEIKSAFRICFYLYLPFVVVDLVISSVLLALGMMMMS 184

Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           P +IS P K+I FV +DGW+LL   LV  ++
Sbjct: 185 PVTISTPVKLILFVAMDGWTLLSRGLVMQYM 215


>gi|171322880|ref|ZP_02911585.1| Yop virulence translocation R [Burkholderia ambifaria MEX-5]
 gi|171091754|gb|EDT37284.1| Yop virulence translocation R [Burkholderia ambifaria MEX-5]
          Length = 216

 Score =  163 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 121/206 (58%), Gaps = 2/206 (0%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
                 ++S+ P + ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ ++ Y+M+P
Sbjct: 10  LLIAVLVMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAP 69

Query: 102 TLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
               + +      ++ Q T+    A     EPF  F+  ++RE++   F+  A       
Sbjct: 70  IGFAAQQQLQGQTLSPQPTQAMLQAFGAAKEPFRQFLAAHSREREKRFFLRSASVIWPKA 129

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
              +    +  +L P+F ++++  +F IGF++ + F+I+D+++A ++M+MGM  + PT++
Sbjct: 130 AAAQLREDDLIVLAPAFTLAQMTDAFRIGFILYIAFIIVDLVIANVLMSMGMNQVQPTNV 189

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++PFK++ FV++DGWS LV  LV ++
Sbjct: 190 AIPFKLMLFVVMDGWSTLVHGLVLTY 215


>gi|304311653|ref|YP_003811251.1| Type III secretory pathway protein [gamma proteobacterium HdN1]
 gi|301797386|emb|CBL45606.1| Type III secretory pathway protein [gamma proteobacterium HdN1]
          Length = 221

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 67/201 (33%), Positives = 116/201 (57%), Gaps = 6/201 (2%)

Query: 51  IAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMG 110
           +AP + +MVT F + ++V S+LR  +G+   PPN+V+  LA+ ++ YVM P L ++  + 
Sbjct: 20  MAPFVAVMVTAFTKLVVVLSLLRNSLGLQQTPPNVVLNGLAIILSLYVMYPVLLQTQSLI 79

Query: 111 IQPLMNN------QITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
              L                     +P   F+  +++E +   F++ A       D    
Sbjct: 80  TSHLKETPEAKLTVDRLIEIFDVGKKPLKDFLIRHSKESERHFFLESARQLLPEEDRNNI 139

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
              ++ +++P+F +SEL  +F+IGFL+ LPFLIID++V+ ++MA+G+ ML PT +SLPFK
Sbjct: 140 HEDDFLVIVPAFTVSELSAAFQIGFLLFLPFLIIDLLVSNLLMALGIAMLSPTQVSLPFK 199

Query: 225 VIFFVLIDGWSLLVENLVKSF 245
           ++ FV I GW+ L+  LV ++
Sbjct: 200 LLLFVFISGWTQLIHGLVLTY 220


>gi|254517017|ref|ZP_05129075.1| flagellar biosynthetic protein FliP [gamma proteobacterium NOR5-3]
 gi|219674522|gb|EED30890.1| flagellar biosynthetic protein FliP [gamma proteobacterium NOR5-3]
          Length = 247

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 94/233 (40%), Positives = 141/233 (60%), Gaps = 6/233 (2%)

Query: 15  ELVFAKSSLHDVMNIPADLSIS--TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72
           E   A++ +  V   P+    S  +  ++   + T+L++ P  LI +T F R +IV +IL
Sbjct: 17  ETALAQTGIPLVSVQPSAAGGSDYSMSIQILLLMTLLTLIPAALITMTSFTRILIVLAIL 76

Query: 73  RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132
           R  +G    P N +I+ L+LF++ ++M+P  + +    +QP MN  +  T A+     PF
Sbjct: 77  RQALGTAQTPSNQIILGLSLFLSLFIMAPVFEVAWSTALQPYMNETVGFTEALDAAKIPF 136

Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192
             FM   TRE DL LF ++      NT     D +   +L+PSF+ SEL+ +F+IGFL+ 
Sbjct: 137 REFMFGQTRETDLLLFAELGGYGAFNT----PDDVPMVVLLPSFLTSELKTAFQIGFLMF 192

Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +PFLIID++VA ++M+MGMMML P  ISLPFK++ FVLIDGWSL+   LV SF
Sbjct: 193 VPFLIIDLVVAAVLMSMGMMMLSPMLISLPFKLMLFVLIDGWSLVAATLVTSF 245


>gi|76574805|gb|ABA47279.1| HrcR [Pseudomonas cichorii]
          Length = 209

 Score =  162 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 64/207 (30%), Positives = 118/207 (57%), Gaps = 2/207 (0%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
                  LS+ P+L+I+ T F +  +V  I R  +G+   PPN+ +  +AL  T ++M+P
Sbjct: 3   LALFLGALSLVPLLMIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAP 62

Query: 102 TLDRSIEMGIQ--PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
             +   +   +    ++N     +A + V EP  +FM  N      +  ++         
Sbjct: 63  VFNEMGQRVKKLPERLDNFAAMESAGKHVIEPLRLFMTRNIDPDIQTHLLENTQRMWPKE 122

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
             ++    +  +++P+F++SEL+  F+IGFLI +PF++ID+IV+ I++A+GM M+ P +I
Sbjct: 123 MSSQASRDDLLLVVPAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTI 182

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
           SLP K++ FVL+DGW+ L++ L  S++
Sbjct: 183 SLPLKILLFVLVDGWTRLLDGLFYSYM 209


>gi|116872065|ref|YP_848846.1| flagellar biosynthesis protein FliP [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116740943|emb|CAK20063.1| flagellar biosynthesis protein FliP [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 255

 Score =  162 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 69/241 (28%), Positives = 129/241 (53%), Gaps = 6/241 (2%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
           +    +F      V A+S L  +     D   S+  V  F + T+LS++  +++M T F 
Sbjct: 18  FAISLIFFWPGVNVHAESWLDSLGVNGTDGVNSS--VALFVLVTVLSLSASIVLMFTHFT 75

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
             IIV  + R G+G  ++PPN V++ LALF++ ++M P +    +   +P    + T + 
Sbjct: 76  YCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQKEEWTASK 135

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
                      ++  NT + D+++ +     +     ITK +      L+P+F+++++ +
Sbjct: 136 VWDETKPLLTKYVAENTYKHDINMML----KAEGEDPITKKEDAPLMALMPAFILTQITQ 191

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
            F  G  I L F+ ID+IV+T++M +GMMM+PP +ISLPFK++ F+ I G+ L+   + +
Sbjct: 192 GFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVFIFIGGYGLITNMIFQ 251

Query: 244 S 244
           +
Sbjct: 252 T 252


>gi|259908638|ref|YP_002648994.1| surface presentation of antigens protein SpaP [Erwinia pyrifoliae
           Ep1/96]
 gi|224964260|emb|CAX55767.1| type III secretion apparatus [Erwinia pyrifoliae Ep1/96]
          Length = 223

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 59/212 (27%), Positives = 115/212 (54%), Gaps = 6/212 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +   G+ +  ++ P L+   TCF +F IV  ++R  +G+  VP NL +  +AL ++ +VM
Sbjct: 6   ISLIGVLSFFTLLPFLIAGGTCFIKFSIVLVMMRNALGIQQVPSNLTLNGIALILSAFVM 65

Query: 100 SPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
            P   R  +         N        +      +  ++ + +    +  F  +    + 
Sbjct: 66  MPVCQRIADDVESRHIDFNQSGAIPQLMDDGLGSYREYLVHYSDHDLIHFFNKVQKKRND 125

Query: 158 NTDITKNDH----IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
           + ++   +H    +    L+P++ +SE++ +F+I F I +PF++IDM+V++I++A+GMMM
Sbjct: 126 DNEVDITEHELRRLPLMTLMPAYALSEIQSAFKIAFYIYIPFVVIDMVVSSILLALGMMM 185

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           + P +IS+P K+I FV +DGWSLL + L+  +
Sbjct: 186 MSPVTISIPIKLILFVAMDGWSLLAKGLITQY 217


>gi|254992443|ref|ZP_05274633.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
           J2-064]
          Length = 258

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 122/225 (54%), Gaps = 7/225 (3%)

Query: 7   FALFLVTPEL-VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65
            +L +  P + V A+S L  +     D   S+  V  F + T+LS++  +++M T F   
Sbjct: 20  ISLVVFWPGVNVHAESWLDSLGVNGTDGVNSS--VALFVLVTVLSLSASIVLMFTHFTYC 77

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
           IIV  + R G+G  ++PPN V++ LALF++ ++M P +    +   +P    + + +   
Sbjct: 78  IIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQKEEWSASKVW 137

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
                    ++  NT + D+++ +     +     +TK +      L+P+F+++++ + F
Sbjct: 138 DETKPLLTKYVAENTYKHDINMML----KAEGEDPVTKKEDAPLMALMPAFILTQITQGF 193

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVL 230
             G  I L F+ ID+IV+T++M +GMMM+PP +ISLPFK++ F  
Sbjct: 194 LTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVFYF 238


>gi|331674342|ref|ZP_08375102.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli TA280]
 gi|331068436|gb|EGI39831.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli TA280]
          Length = 221

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 59/213 (27%), Positives = 121/213 (56%), Gaps = 4/213 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  +    I ++ ++ P ++   TCF +F IVF I+R  +G+  VP N+ +  +AL ++ 
Sbjct: 2   SNSISLIAILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61

Query: 97  YVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-- 152
           +VM P             +  NN  +    ++     +  ++   +  + +S F  +   
Sbjct: 62  FVMMPVGKEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQKG 121

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
           +SS  N +I  +++I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM
Sbjct: 122 NSSEDNEEIIDDENISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+ P +IS P K+I FV +DGW++L + L+  +
Sbjct: 182 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214


>gi|46906927|ref|YP_013316.1| flagellar biosynthesis protein FliP [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47091639|ref|ZP_00229435.1| flagellar biosynthesis protein FliP [Listeria monocytogenes str. 4b
           H7858]
 gi|226223307|ref|YP_002757414.1| flagellar biosynthesic protein FliP [Listeria monocytogenes
           Clip81459]
 gi|254824044|ref|ZP_05229045.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
           J1-194]
 gi|254853119|ref|ZP_05242467.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
           R2-503]
 gi|254932044|ref|ZP_05265403.1| flagellar biosynthesis protein FliP [Listeria monocytogenes
           HPB2262]
 gi|255521627|ref|ZP_05388864.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
           J1-175]
 gi|300764487|ref|ZP_07074480.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
           N1-017]
 gi|46880193|gb|AAT03493.1| flagellar biosynthesis protein FliP [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47019958|gb|EAL10695.1| flagellar biosynthesis protein FliP [Listeria monocytogenes str. 4b
           H7858]
 gi|225875769|emb|CAS04472.1| Putative flagellar biosynthesic protein FliP [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258606470|gb|EEW19078.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
           R2-503]
 gi|293583597|gb|EFF95629.1| flagellar biosynthesis protein FliP [Listeria monocytogenes
           HPB2262]
 gi|293593273|gb|EFG01034.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
           J1-194]
 gi|300514841|gb|EFK41895.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
           N1-017]
 gi|328467245|gb|EGF38325.1| flagellar biosynthesis protein FliP [Listeria monocytogenes 1816]
 gi|328475641|gb|EGF46390.1| flagellar biosynthesis protein FliP [Listeria monocytogenes 220]
 gi|332311101|gb|EGJ24196.1| Flagellar biosynthesis protein FliP [Listeria monocytogenes str.
           Scott A]
          Length = 255

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 68/239 (28%), Positives = 131/239 (54%), Gaps = 7/239 (2%)

Query: 7   FALFLVTPEL-VFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRF 65
            +L +  P + V A+S L  +     D   S+  V  F + T+LS++  +++M T F   
Sbjct: 20  ISLVVFWPGVNVHAESWLDSLGVNGTDGVNSS--VALFVLVTVLSLSASIVLMFTHFTYC 77

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
           IIV  + R G+G  ++PPN V++ LALF++ ++M P +    +   +P    + + +   
Sbjct: 78  IIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQKEEWSASKVW 137

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
                    ++  NT + D+++ +     +     +TK +      L+P+F+++++ + F
Sbjct: 138 DETKPLLTKYVAENTYKHDINMML----KAEGEDPVTKKEDAPLMALMPAFILTQITQGF 193

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
             G  I L F+ ID+IV+T++M +GMMM+PP +ISLPFK++ F+ I G+ L+   + ++
Sbjct: 194 LTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVFIFIGGYGLITNMIFQT 252


>gi|313624918|gb|EFR94826.1| flagellar biosynthesis protein FliP [Listeria innocua FSL J1-023]
          Length = 255

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 67/241 (27%), Positives = 129/241 (53%), Gaps = 6/241 (2%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
           +    +F      V A+S L  +     D   S+  V  F + T+LS++  +++M T F 
Sbjct: 18  FAISLVFFWPGVNVHAESWLDSLGVNGTDGVNSS--VALFVLVTVLSLSASIVLMFTHFT 75

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
             IIV  + R G+G  ++PPN V++ LALF++ ++M P +    +   +P    + + + 
Sbjct: 76  YCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQKEEWSASK 135

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
                      ++  NT + D+++ +     +     +TK +      L+P+F+++++ +
Sbjct: 136 VWDETQPLLTKYVAENTYKHDINMML----KAEGEEPVTKKEDAPLMALMPAFILTQITQ 191

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
            F  G  I L F+ ID+IV+T++M +GMMM+PP +ISLPFK++ F+ I G+ L+   + +
Sbjct: 192 GFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVFIFIGGYGLITNMIFQ 251

Query: 244 S 244
           +
Sbjct: 252 T 252


>gi|213029393|ref|ZP_03343840.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 203

 Score =  162 bits (409), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 74/202 (36%), Positives = 119/202 (58%), Gaps = 1/202 (0%)

Query: 45  IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
           I  +LSI P++++M T F +  +VFSILR  +G+  VPPN+ +   AL ++ ++M PTL 
Sbjct: 1   ILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLL 60

Query: 105 RSIEM-GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163
              E      +       +    +   P+  F++ N+ EK+ + F ++   +       K
Sbjct: 61  AVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRK 120

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
                  ILIP+F +S+L ++F IG LI LPFL ID++++ I++AMGMMM+ P +ISLPF
Sbjct: 121 IKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPF 180

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K++ F+L  GW L +  LV+SF
Sbjct: 181 KLLIFLLAGGWDLTLAQLVQSF 202


>gi|238757865|ref|ZP_04619047.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia
           aldovae ATCC 35236]
 gi|238703850|gb|EEP96385.1| Type III secretion apparatus protein, YscR/HrcR family [Yersinia
           aldovae ATCC 35236]
          Length = 215

 Score =  162 bits (409), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 71/208 (34%), Positives = 126/208 (60%), Gaps = 3/208 (1%)

Query: 41  RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100
           +   +  +LS+ P+ ++M T F +  +VFSILR  +G+  VPPN+ +  LAL ++ ++M+
Sbjct: 9   QLIALLFVLSLLPLAVVMGTSFLKLAVVFSILRNALGIQQVPPNMALYGLALVLSMFIMA 68

Query: 101 PTLDRSIEMGIQPLMNNQ--ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
           PT+  +++    P+ +    +  +        P+  F++ N+ EK+   F ++   +   
Sbjct: 69  PTVL-AVKAQWHPVADASTPVWMSGWDGHALGPYRQFLQKNSDEKEARYFRNLIAKTWPE 127

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
               +       IL+P+F +S+L ++F IG LI LPFL ID++V+ I++AMGMMM+ P +
Sbjct: 128 DARRRVKPDSLLILLPAFTVSQLTQAFRIGLLIYLPFLAIDLLVSNILLAMGMMMVSPMT 187

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           ISLPFK++ F+L  GW L++  LV+SF+
Sbjct: 188 ISLPFKLLIFLLAGGWDLILSQLVQSFV 215


>gi|16799759|ref|NP_470027.1| flagellar biosynthesis protein FliP [Listeria innocua Clip11262]
 gi|16413136|emb|CAC95916.1| lin0684 [Listeria innocua Clip11262]
 gi|313620096|gb|EFR91601.1| flagellar biosynthesis protein FliP [Listeria innocua FSL S4-378]
          Length = 255

 Score =  162 bits (409), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 67/241 (27%), Positives = 129/241 (53%), Gaps = 6/241 (2%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
           +    +F      V A+S L  +     D   S+  V  F + T+LS++  +++M T F 
Sbjct: 18  FAISLVFFWPGVNVHAESWLDSLGVNGTDGVNSS--VALFVLVTVLSLSASIVLMFTHFT 75

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
             IIV  + R G+G  ++PPN V++ LALF++ ++M P +    +   +P    + + + 
Sbjct: 76  YCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQKEEWSASK 135

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
                      ++  NT + D+++ +     +     +TK +      L+P+F+++++ +
Sbjct: 136 VWDETQPLLTKYVAENTYKHDINMML----KAEGEDPVTKKEDAPLMALMPAFILTQITQ 191

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
            F  G  I L F+ ID+IV+T++M +GMMM+PP +ISLPFK++ F+ I G+ L+   + +
Sbjct: 192 GFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVFIFIGGYGLITNMIFQ 251

Query: 244 S 244
           +
Sbjct: 252 T 252


>gi|224825752|ref|ZP_03698856.1| flagellar biosynthetic protein FliP [Lutiella nitroferrum 2002]
 gi|224601976|gb|EEG08155.1| flagellar biosynthetic protein FliP [Lutiella nitroferrum 2002]
          Length = 252

 Score =  162 bits (409), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 75/221 (33%), Positives = 127/221 (57%), Gaps = 7/221 (3%)

Query: 24  HDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPP 83
            +    P D ++ T   +   I T+L + P+L++M+T F RF+IV S+LR  +G+    P
Sbjct: 35  ANAGGTPVDFTVKT---QILIIMTLLGLLPVLMLMMTSFTRFVIVLSLLRQALGLQQGLP 91

Query: 84  NLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREK 143
           N ++  +AL +T  VM P         + P   ++IT   A+    +P   FM   T + 
Sbjct: 92  NRLVTGVALILTLLVMRPVGLEVWNKAMLPFDQDKITMQQALDVAQQPISRFMLAQTSKA 151

Query: 144 DLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVA 203
            L+    ++       ++ +     + + + +F++SEL+ +F+IG ++ +PFL+ID++V+
Sbjct: 152 ALAQVAKLSG----EENVARPQDHAFAVKLAAFVLSELKTAFQIGCMLFIPFLVIDLVVS 207

Query: 204 TIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           +++MAMGMMML P  ISLP K++ FVL+DGWSL V  LV S
Sbjct: 208 SVLMAMGMMMLSPLVISLPLKLLMFVLVDGWSLTVNTLVTS 248


>gi|284922803|emb|CBG35891.1| type III secretion system protein [Escherichia coli 042]
          Length = 221

 Score =  162 bits (409), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 59/213 (27%), Positives = 121/213 (56%), Gaps = 4/213 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  +    I ++ ++ P ++   TCF +F IVF I+R  +G+  VP N+ +  +AL ++ 
Sbjct: 2   SNSISLIAILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGIALLLSM 61

Query: 97  YVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-- 152
           +VM P             +  NN  +    ++     +  ++   +  + +S F  +   
Sbjct: 62  FVMMPVGKEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQKV 121

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
           +SS  N +I  +++I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM
Sbjct: 122 NSSEDNEEIIDDENISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+ P +IS P K+I FV +DGW++L + L+  +
Sbjct: 182 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214


>gi|310767462|gb|ADP12412.1| surface presentation of antigens protein SpaP [Erwinia sp. Ejp617]
          Length = 223

 Score =  162 bits (409), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 58/212 (27%), Positives = 115/212 (54%), Gaps = 6/212 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +    + +  ++ P L+   TCF +F IV  ++R  +G+  VP NL +  +AL ++ +VM
Sbjct: 6   ISLIAVLSFFTLLPFLIAGGTCFIKFSIVLVMMRNALGIQQVPSNLTLNGIALILSAFVM 65

Query: 100 SPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
            P   R  +         N        +      +  ++ + +    +  F ++    + 
Sbjct: 66  MPVCQRIADDVESRHIDFNQSGAIPQLMDDGLGSYREYLVHYSDHDLIHFFNNVQKKRND 125

Query: 158 NTDITKNDH----IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
           + ++   +H    +    L+P++ +SE++ +F+I F I +PF++IDM+V++I++A+GMMM
Sbjct: 126 DNEVDITEHELRRLPLMTLMPAYALSEIQSAFKIAFYIYIPFVVIDMVVSSILLALGMMM 185

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           + P +IS+P K+I FV +DGWSLL + L+  +
Sbjct: 186 MSPVTISIPIKLILFVAMDGWSLLAKGLITQY 217


>gi|188026435|ref|ZP_02962073.2| hypothetical protein PROSTU_04166 [Providencia stuartii ATCC 25827]
 gi|188019857|gb|EDU57897.1| hypothetical protein PROSTU_04166 [Providencia stuartii ATCC 25827]
          Length = 227

 Score =  162 bits (409), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 55/217 (25%), Positives = 117/217 (53%), Gaps = 2/217 (0%)

Query: 32  DLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLA 91
           ++SI +  +    + ++ ++ P ++   TC+ +  IV  ++R  MG+  VP  + +  +A
Sbjct: 6   NMSIVSNEIPMLALVSLATLLPFIIAAGTCYLKISIVLIMVRNAMGVQQVPSTMALNGIA 65

Query: 92  LFMTFYVMSPTLDRS--IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           + ++ +VM P +          +    N  +    +      +  +++  +  + +  F 
Sbjct: 66  MLLSLFVMMPVVQDISHYMREEKVDFGNVESVDNFVDGGLGRYKAYLQKYSDPELVQFFE 125

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
            +    +      +        L+P++ +SE++ +FEIGF I LPF++ID+++++I++A+
Sbjct: 126 SVQQQRNEEPMDAEAHSATLFSLLPAYALSEVKSAFEIGFYIYLPFVVIDLVISSILLAL 185

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           GMMM+ P +IS+P K+I FV IDGWSL+ + LV  ++
Sbjct: 186 GMMMMSPVTISVPVKLILFVAIDGWSLISKGLVMQYL 222


>gi|193063605|ref|ZP_03044694.1| type III secretion apparatus protein EpaP [Escherichia coli E22]
 gi|193071824|ref|ZP_03052713.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli E110019]
 gi|194426470|ref|ZP_03059025.1| fliP family protein [Escherichia coli B171]
 gi|209920317|ref|YP_002294401.1| surface presentation of antigens protein SpaP [Escherichia coli
           SE11]
 gi|218555411|ref|YP_002388324.1| surface presentation of antigens protein SpaP [Escherichia coli
           IAI1]
 gi|218706362|ref|YP_002413881.1| surface presentation of antigens protein SpaP [Escherichia coli
           UMN026]
 gi|260845525|ref|YP_003223303.1| type III secretion protein EpaP [Escherichia coli O103:H2 str.
           12009]
 gi|260856977|ref|YP_003230868.1| type III secretion protein EpaP [Escherichia coli O26:H11 str.
           11368]
 gi|260869540|ref|YP_003235942.1| type III secretion protein EpaP [Escherichia coli O111:H- str.
           11128]
 gi|293406354|ref|ZP_06650280.1| surface presentation antigens protein SpaP [Escherichia coli
           FVEC1412]
 gi|293412212|ref|ZP_06654935.1| YscR/HrcR family type III secretion apparatus protein [Escherichia
           coli B354]
 gi|293449185|ref|ZP_06663606.1| YscR/HrcR family type III secretion apparatus protein [Escherichia
           coli B088]
 gi|298382089|ref|ZP_06991686.1| spaP protein [Escherichia coli FVEC1302]
 gi|300815709|ref|ZP_07095933.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 107-1]
 gi|300820661|ref|ZP_07100812.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 119-7]
 gi|300898067|ref|ZP_07116435.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 198-1]
 gi|307310520|ref|ZP_07590168.1| Yop virulence translocation R [Escherichia coli W]
 gi|309793922|ref|ZP_07688347.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 145-7]
 gi|331664426|ref|ZP_08365332.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli TA143]
 gi|331678847|ref|ZP_08379521.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli H591]
 gi|14422435|dbj|BAB60842.1| epaP [Escherichia coli]
 gi|62085063|gb|AAX62928.1| putative type III secretion apparatus integral membrane protein
           component [Escherichia coli]
 gi|192930882|gb|EDV83487.1| type III secretion apparatus protein EpaP [Escherichia coli E22]
 gi|192954864|gb|EDV85378.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli E110019]
 gi|194415778|gb|EDX32045.1| fliP family protein [Escherichia coli B171]
 gi|209913576|dbj|BAG78650.1| putative type III secretion protein [Escherichia coli SE11]
 gi|218362179|emb|CAQ99796.1| putative type III secretion system protein EpaP [Escherichia coli
           IAI1]
 gi|218433459|emb|CAR14361.1| putative type III secretion system protein EpaP [Escherichia coli
           UMN026]
 gi|257755626|dbj|BAI27128.1| type III secretion protein EpaP [Escherichia coli O26:H11 str.
           11368]
 gi|257760672|dbj|BAI32169.1| type III secretion protein EpaP [Escherichia coli O103:H2 str.
           12009]
 gi|257765896|dbj|BAI37391.1| type III secretion protein EpaP [Escherichia coli O111:H- str.
           11128]
 gi|291322275|gb|EFE61704.1| YscR/HrcR family type III secretion apparatus protein [Escherichia
           coli B088]
 gi|291426360|gb|EFE99392.1| surface presentation antigens protein SpaP [Escherichia coli
           FVEC1412]
 gi|291468983|gb|EFF11474.1| YscR/HrcR family type III secretion apparatus protein [Escherichia
           coli B354]
 gi|298277229|gb|EFI18745.1| spaP protein [Escherichia coli FVEC1302]
 gi|300358205|gb|EFJ74075.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 198-1]
 gi|300526925|gb|EFK47994.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 119-7]
 gi|300531638|gb|EFK52700.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 107-1]
 gi|306909415|gb|EFN39910.1| Yop virulence translocation R [Escherichia coli W]
 gi|308122329|gb|EFO59591.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 145-7]
 gi|315062167|gb|ADT76494.1| type III secretion system protein [Escherichia coli W]
 gi|323153851|gb|EFZ40087.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli EPECa14]
 gi|323180305|gb|EFZ65857.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli 1180]
 gi|323377249|gb|ADX49517.1| Yop virulence translocation R [Escherichia coli KO11]
 gi|331058357|gb|EGI30338.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli TA143]
 gi|331073677|gb|EGI44998.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli H591]
          Length = 221

 Score =  161 bits (408), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 60/213 (28%), Positives = 121/213 (56%), Gaps = 4/213 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  +    I ++ ++ P ++   TCF +F IVF I+R  +G+  VP N+ +  +AL ++ 
Sbjct: 2   SNSISLIAILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61

Query: 97  YVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-- 152
           +VM P             +  NN  +    ++     +  ++   +  + +S F  +   
Sbjct: 62  FVMMPVGKEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQKV 121

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
           +SS  N +I  +D+I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM
Sbjct: 122 NSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+ P +IS P K+I FV +DGW++L + L+  +
Sbjct: 182 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214


>gi|34498079|ref|NP_902294.1| surface presentation of antigens protein SpaP [Chromobacterium
           violaceum ATCC 12472]
 gi|34103934|gb|AAQ60294.1| surface presentation of antigens; secretory proteins
           [Chromobacterium violaceum ATCC 12472]
          Length = 220

 Score =  161 bits (408), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 53/216 (24%), Positives = 116/216 (53%), Gaps = 13/216 (6%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +    +    ++ P L+   TCF +F IVF ++R  +G+  VP N+ +  +AL ++ +VM
Sbjct: 5   ISLIALLAFSTLLPFLIASGTCFVKFSIVFVMVRNALGLQQVPSNMTLNGIALMLSMFVM 64

Query: 100 SPTLDRSIEMGIQPLMNNQITETTA------IQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
            P   ++           +++ T+       ++   + +  +++  +  +    F     
Sbjct: 65  LPVAQQAYGY----YQEERVSFTSVEAVNNFVENGLDGYRGYLQKYSDPELTRFFEKAQS 120

Query: 154 SSHRN---TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
                        +D      L+P++ +SE++ +F+IGF + LPF+++D++++++++A+G
Sbjct: 121 QRSERDGGEAAAPDDKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVISSVLLALG 180

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           MMM+ P +IS+P K++ FV +DGW+LL + LV  ++
Sbjct: 181 MMMMSPVTISVPIKLVLFVALDGWTLLSKGLVLQYL 216


>gi|313610171|gb|EFR85472.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
           F2-208]
          Length = 252

 Score =  161 bits (408), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 67/241 (27%), Positives = 129/241 (53%), Gaps = 6/241 (2%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
           +    +F      V A+S L  +     D   S+  V  F + T+LS++  +++M T F 
Sbjct: 18  FAISLVFFWPGVNVHAESWLDSLGVNGTDGVNSS--VALFVLVTVLSLSASIVLMFTHFT 75

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
             IIV  + R G+G  ++PPN V++ LALF++ ++M P +    +   +P    + + + 
Sbjct: 76  YCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQKEEWSASK 135

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
                      ++  NT + D+++ +     +     +TK +      L+P+F+++++ +
Sbjct: 136 VWDETQPLLTKYVAENTYKHDINMML----KAEGEDPVTKKEDAPLMALMPAFILTQITQ 191

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
            F  G  I L F+ ID+IV+T++M +GMMM+PP +ISLPFK++ F+ I G+ L+   + +
Sbjct: 192 GFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVFIFIGGYGLITNMIFQ 251

Query: 244 S 244
           +
Sbjct: 252 T 252


>gi|47095241|ref|ZP_00232852.1| flagellar biosynthesis protein FliP [Listeria monocytogenes str.
           1/2a F6854]
 gi|224498759|ref|ZP_03667108.1| flagellar biosynthesis protein FliP [Listeria monocytogenes Finland
           1988]
 gi|254829333|ref|ZP_05234020.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
           N3-165]
 gi|254900088|ref|ZP_05260012.1| flagellar biosynthesis protein FliP [Listeria monocytogenes J0161]
 gi|254911359|ref|ZP_05261371.1| flagellar biosynthesis protein FliP [Listeria monocytogenes J2818]
 gi|254935686|ref|ZP_05267383.1| flagellar biosynthesis protein FliP [Listeria monocytogenes F6900]
 gi|284801006|ref|YP_003412871.1| flagellar biosynthesis protein FliP [Listeria monocytogenes
           08-5578]
 gi|284994148|ref|YP_003415916.1| flagellar biosynthesis protein FliP [Listeria monocytogenes
           08-5923]
 gi|47016312|gb|EAL07234.1| flagellar biosynthesis protein FliP [Listeria monocytogenes str.
           1/2a F6854]
 gi|258601745|gb|EEW15070.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
           N3-165]
 gi|258608268|gb|EEW20876.1| flagellar biosynthesis protein FliP [Listeria monocytogenes F6900]
 gi|284056568|gb|ADB67509.1| flagellar biosynthesis protein FliP [Listeria monocytogenes
           08-5578]
 gi|284059615|gb|ADB70554.1| flagellar biosynthesis protein FliP [Listeria monocytogenes
           08-5923]
 gi|293589295|gb|EFF97629.1| flagellar biosynthesis protein FliP [Listeria monocytogenes J2818]
          Length = 255

 Score =  161 bits (408), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 64/238 (26%), Positives = 129/238 (54%), Gaps = 5/238 (2%)

Query: 7   FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
            +L +  P +     S  D + +     +++  V  F + T+LS++  +++M T F   I
Sbjct: 20  ISLVVFWPGVNVHAESWLDSLGVNGTDGVNS-SVALFVLVTVLSLSASIVLMFTHFTYCI 78

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IV  + R G+G  ++PPN V++ LALF++ ++M P +    +   +P    + + +    
Sbjct: 79  IVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQKEEWSASKVWD 138

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
                   ++  NT + D+++ +     +     +TK +      L+P+F+++++ + F 
Sbjct: 139 ETQPLLTKYVAENTYKHDINMML----KAEGEDPVTKKEDAPLMALMPAFILTQITQGFL 194

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
            G  I L F+ ID+IV+T++M +GMMM+PP +ISLPFK++ F+ I G+ L+   + ++
Sbjct: 195 TGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVFIFIGGYGLITNMIFQT 252


>gi|302185358|ref|ZP_07262031.1| type III secretion system protein [Pseudomonas syringae pv.
           syringae 642]
          Length = 217

 Score =  161 bits (408), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 67/212 (31%), Positives = 115/212 (54%), Gaps = 2/212 (0%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           T  +        LS+ P LL++ T F +   V  I R  +G+  VPPN+ +  +AL  T 
Sbjct: 6   TNPIMLALFLGALSLLPFLLVVCTSFLKIASVLLITRNAIGVQQVPPNMALYGIALAATL 65

Query: 97  YVMSPTLDRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
           +VM+P       +       + +    T + + +  P   FM +N     L+   + A  
Sbjct: 66  FVMAPVFSEIATIAQDNPLQLRDTRDLTRSAKALLAPLQAFMNHNVDPDVLTHLHENALR 125

Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
                        +  +LIP+F++SEL+ +FEIGFLI +PF++ID+IV+ +++A+GM M+
Sbjct: 126 MWPKDMAAAASRGDLLLLIPAFVLSELQAAFEIGFLIYIPFIVIDLIVSNLLLALGMQMV 185

Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
            P +ISLP K++ FVL+ GW+ L+++L  S++
Sbjct: 186 SPMTISLPLKILLFVLVSGWTRLLDSLFYSYM 217


>gi|283478610|emb|CAY74526.1| Surface presentation of antigens protein SpaP [Erwinia pyrifoliae
           DSM 12163]
          Length = 229

 Score =  161 bits (408), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 59/212 (27%), Positives = 115/212 (54%), Gaps = 6/212 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +   G+ +  ++ P L+   TCF +F IV  ++R  +G+  VP NL +  +AL ++ +VM
Sbjct: 12  ISLIGVLSFFTLLPFLIAGGTCFIKFSIVLVMMRNALGIQQVPSNLTLNGIALILSAFVM 71

Query: 100 SPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
            P   R  +         N        +      +  ++ + +    +  F  +    + 
Sbjct: 72  MPVCQRIADDVESRHIDFNQSGAIPQLMDDGLGSYREYLVHYSDHDLIHFFNKVQKKRND 131

Query: 158 NTDITKNDH----IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
           + ++   +H    +    L+P++ +SE++ +F+I F I +PF++IDM+V++I++A+GMMM
Sbjct: 132 DNEVDITEHELRRLPLMTLMPAYALSEIQSAFKIAFYIYIPFVVIDMVVSSILLALGMMM 191

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           + P +IS+P K+I FV +DGWSLL + L+  +
Sbjct: 192 MSPVTISIPIKLILFVAMDGWSLLAKGLITQY 223


>gi|301027456|ref|ZP_07190793.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 69-1]
 gi|300394964|gb|EFJ78502.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 69-1]
 gi|323966655|gb|EGB62087.1| YscR/HrcR family protein type III secretion lipoprotein
           [Escherichia coli M863]
 gi|323978518|gb|EGB73600.1| YscR/HrcR family protein type III secretion lipoprotein
           [Escherichia coli TW10509]
          Length = 221

 Score =  161 bits (408), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 59/213 (27%), Positives = 121/213 (56%), Gaps = 4/213 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  +    I ++ ++ P ++   TCF +F IVF I+R  +G+  VP N+ +  +AL ++ 
Sbjct: 2   SNSISLIAILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61

Query: 97  YVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-- 152
           +VM P             +  NN  +    ++     +  ++   +  + +S F  +   
Sbjct: 62  FVMMPVGKEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQKV 121

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
           +SS  N +I  +++I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM
Sbjct: 122 NSSEDNEEIIDDENISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+ P +IS P K+I FV +DGW++L + L+  +
Sbjct: 182 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214


>gi|167840284|ref|ZP_02466968.1| type III secretion system protein [Burkholderia thailandensis
           MSMB43]
          Length = 216

 Score =  161 bits (407), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 121/206 (58%), Gaps = 2/206 (0%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
                 ++S+ P + ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ ++ Y+M+P
Sbjct: 10  LLIAVLVMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAP 69

Query: 102 TLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
               + +      ++ Q T+    A     EPF  F+  ++RE++   F+  A       
Sbjct: 70  IGFAAQQQLQGQALSPQPTQAMLQAFGAAKEPFRRFLAAHSREREKRFFLRSASVIWPKA 129

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
              +    +  +L P+F ++++  +F IGFL+ + F+I+D+++A ++M+MGM  + PT++
Sbjct: 130 AAAQLRDDDLIVLAPAFTLAQMTDAFRIGFLLYIAFIIVDLVIANVLMSMGMNQVQPTNV 189

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++PFK++ FV++DGWS LV  LV ++
Sbjct: 190 AIPFKLMLFVVMDGWSTLVHGLVLTY 215


>gi|82470758|gb|ABB77410.1| HrcR [Pantoea stewartii subsp. stewartii]
          Length = 217

 Score =  161 bits (407), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 69/205 (33%), Positives = 117/205 (57%), Gaps = 2/205 (0%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
                LS+ PIL+I+ TCF +  +V  I R  +G+  VPPN+ +  +AL  T +VM+P  
Sbjct: 13  LFLGALSLIPILMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVF 72

Query: 104 DRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
           ++  +   Q     +N     T+I     P   FM +NT    L    + +      +  
Sbjct: 73  NQMQQQFSQAPADFSNVDNLRTSITNGVTPLQKFMAHNTDPDILIHLQENSVRMWPKSMS 132

Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
                    ++IP+F++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SL
Sbjct: 133 ENISKDNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSL 192

Query: 222 PFKVIFFVLIDGWSLLVENLVKSFI 246
           P K++ FVLI+GW+ L++ L  S++
Sbjct: 193 PLKMLLFVLINGWTRLLDGLFYSYL 217


>gi|82524597|ref|YP_406192.1| surface presentation of antigens protein SpaP [Shigella dysenteriae
           Sd197]
 gi|187734451|ref|YP_001883216.1| type III secretion apparatus protein, YscR/HrcR family [Shigella
           boydii CDC 3083-94]
 gi|32307046|gb|AAP79016.1| Spa24 [Shigella flexneri]
 gi|81243995|gb|ABB64704.1| Spa24 [Shigella dysenteriae Sd197]
 gi|187426947|gb|ACD06222.1| type III secretion apparatus protein, YscR/HrcR family [Shigella
           boydii CDC 3083-94]
 gi|320182865|gb|EFW57740.1| surface presentation of antigens protein SpaP [Shigella flexneri
           CDC 796-83]
          Length = 216

 Score =  161 bits (407), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 57/209 (27%), Positives = 121/209 (57%), Gaps = 3/209 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +      +  ++ P L+   TC+ +F IVF ++R  +G+  VP N+ +  +AL M  +VM
Sbjct: 5   MSLIATLSFFTLLPFLVAAGTCYIKFSIVFVMVRNALGLQQVPSNMTLNGIALIMALFVM 64

Query: 100 SPTLDRSIEMGIQ-PLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
            P ++   E  +  P   + I++           +  +++ +T  + L+ F   +   + 
Sbjct: 65  KPIIEAGYENYLNGPQKFDTISDIVRFSDSGLIEYKQYLKKHTDLE-LARFFQRSEEENA 123

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
           +    +N+      L+P++ +SE++ +F+IGF + LPF+++D+++++I++A+GMMM+ P 
Sbjct: 124 DLKSAENNDYSLFSLLPAYALSEIKDAFKIGFYLYLPFIVVDLVISSILLALGMMMMSPI 183

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +IS+P K++ FV +DGW +L + L++ +I
Sbjct: 184 TISVPIKLVLFVALDGWGILSKALIEQYI 212


>gi|290892876|ref|ZP_06555867.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
           J2-071]
 gi|290557688|gb|EFD91211.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
           J2-071]
          Length = 255

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 67/241 (27%), Positives = 129/241 (53%), Gaps = 6/241 (2%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
           +    +F      V A+S L  +     D   S+  V  F + T+LS++  +++M T F 
Sbjct: 18  FAISLVFFWPGVNVHAESWLDSLGVNGTDGVNSS--VALFVMVTVLSLSASIVLMFTHFT 75

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
             IIV  + R G+G  ++PPN V++ LALF++ ++M P +    +   +P    + + + 
Sbjct: 76  YCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQKEEWSASK 135

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
                      ++  NT + D+++ +     +     +TK +      L+P+F+++++ +
Sbjct: 136 VWDETQPLLTKYVAENTYKHDINMML----KAEGEDPVTKKEDAPLMALMPAFILTQITQ 191

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
            F  G  I L F+ ID+IV+T++M +GMMM+PP +ISLPFK++ F+ I G+ L+   + +
Sbjct: 192 GFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVFIFIGGYGLITNMIFQ 251

Query: 244 S 244
           +
Sbjct: 252 T 252


>gi|16802718|ref|NP_464203.1| flagellar biosynthesis protein FliP [Listeria monocytogenes EGD-e]
 gi|224502019|ref|ZP_03670326.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
           R2-561]
 gi|16410065|emb|CAC98754.1| lmo0676 [Listeria monocytogenes EGD-e]
          Length = 255

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 64/238 (26%), Positives = 129/238 (54%), Gaps = 5/238 (2%)

Query: 7   FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
            +L +  P +     S  D + +     +++  V  F + T+LS++  +++M T F   I
Sbjct: 20  ISLVVFWPGVNVHAESWMDSLGVNGTDGVNS-SVALFVLVTVLSLSASIVLMFTHFTYCI 78

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IV  + R G+G  ++PPN V++ LALF++ ++M P +    +   +P    + + +    
Sbjct: 79  IVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQKEEWSASKVWD 138

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
                   ++  NT + D+++ +     +     +TK +      L+P+F+++++ + F 
Sbjct: 139 ETQPLLTKYVAENTYKHDINMML----KAEGEDPVTKKEDAPLMALMPAFILTQITQGFL 194

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
            G  I L F+ ID+IV+T++M +GMMM+PP +ISLPFK++ F+ I G+ L+   + ++
Sbjct: 195 TGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVFIFIGGYGLITNMIFQT 252


>gi|300936202|ref|ZP_07151138.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 21-1]
 gi|300458659|gb|EFK22152.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 21-1]
          Length = 221

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 59/213 (27%), Positives = 121/213 (56%), Gaps = 4/213 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  +    I ++ ++ P ++   TCF +F IVF I+R  +G+  VP N+ +  +AL ++ 
Sbjct: 2   SNSISLIAILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61

Query: 97  YVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-- 152
           +VM P             +  NN  +    ++     +  ++   +  + +S F  +   
Sbjct: 62  FVMMPVGKEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFGKIQKV 121

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
           +SS  N +I  +++I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM
Sbjct: 122 NSSEDNEEIIDDENISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+ P +IS P K+I FV +DGW++L + L+  +
Sbjct: 182 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214


>gi|46562139|ref|YP_009162.1| type III secretion system protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120586838|ref|YP_961183.1| type III secretion system protein [Desulfovibrio vulgaris subsp.
           vulgaris DP4]
 gi|46447676|gb|AAS94342.1| type III secretion system protein, YscR family [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120564252|gb|ABM29995.1| Yop virulence translocation R [Desulfovibrio vulgaris DP4]
 gi|311235512|gb|ADP88365.1| Yop virulence translocation R [Desulfovibrio vulgaris RCH1]
          Length = 216

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 72/206 (34%), Positives = 123/206 (59%), Gaps = 9/206 (4%)

Query: 46  FTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT--- 102
             +L +AP  L+MVT + + ++V S++R  +G+  VPP +V+  LA+ ++ ++M+P    
Sbjct: 13  MALLGLAPFFLMMVTSYVKIVVVTSLVRNALGVQQVPPTMVMNGLAIILSIFIMAPVASG 72

Query: 103 ---LDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
              L +++++G  P     I     + + + P   F+  N  +K +++FM  A       
Sbjct: 73  TLDLMQNMKIGPDPAPREIIAL---LDKASPPLRGFLERNADDKVVTVFMSTAKRIWPAD 129

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                      ILIPSF ISEL R+F+IGFL+ LPF+ ID++++ I++AMGMMM+ P +I
Sbjct: 130 QHASISRDNLLILIPSFTISELTRAFQIGFLLYLPFVAIDLVISNILLAMGMMMVSPMTI 189

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           SLPFK++ FV +DGW  + + L+ S+
Sbjct: 190 SLPFKLLLFVTLDGWLKVSQGLLLSY 215


>gi|157159039|ref|YP_001464197.1| surface presentation of antigens protein SpaP [Escherichia coli
           E24377A]
 gi|157081069|gb|ABV20777.1| type III secretion apparatus protein EpaP [Escherichia coli
           E24377A]
          Length = 221

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 60/213 (28%), Positives = 121/213 (56%), Gaps = 4/213 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  +    I ++ ++ P ++   TCF +F IVF I+R  +G+  VP N+ +  +AL ++ 
Sbjct: 2   SNSISLIAILSLFTLLPFIIASGTCFIKFSIVFVIVRKALGLQQVPSNMTLNGVALLLSM 61

Query: 97  YVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-- 152
           +VM P             +  NN  +    ++     +  ++   +  + +S F  +   
Sbjct: 62  FVMMPVGKEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQKV 121

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
           +SS  N +I  +D+I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM
Sbjct: 122 NSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+ P +IS P K+I FV +DGW++L + L+  +
Sbjct: 182 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214


>gi|74314952|ref|YP_313370.1| surface presentation of antigens protein SpaP [Shigella sonnei
           Ss046]
 gi|73858429|gb|AAZ91135.1| Spa24 [Shigella sonnei Ss046]
          Length = 216

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 57/209 (27%), Positives = 121/209 (57%), Gaps = 3/209 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +      +  ++ P L+   TC+ +F IVF ++R  +G+  VP N+ +  +AL M  +VM
Sbjct: 5   MSLIATLSFFTLLPFLVAAGTCYIKFSIVFVMVRNALGLQQVPSNMTLNGIALIMALFVM 64

Query: 100 SPTLDRSIEMGIQ-PLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
            P ++   E  +  P   + I++           +  +++ +T  + L+ F   +   + 
Sbjct: 65  KPIIEAGYENYLNGPQKFDTISDIVRFSDSGLMEYKQYLKKHTDLE-LARFFQRSEEENA 123

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
           +    +N+      L+P++ +SE++ +F+IGF + LPF+++D+++++I++A+GMMM+ P 
Sbjct: 124 DLKSAENNDYSLFSLLPAYALSEIKDAFKIGFYLYLPFVVVDLVISSILLALGMMMMSPI 183

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +IS+P K++ FV +DGW +L + L++ +I
Sbjct: 184 TISVPIKLVLFVALDGWGILSKALIEQYI 212


>gi|260778660|ref|ZP_05887552.1| yop virulence translocation protein R [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260604824|gb|EEX31119.1| yop virulence translocation protein R [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 216

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 66/208 (31%), Positives = 119/208 (57%), Gaps = 2/208 (0%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   +   +S+ P+  +M T F +  IV S+LR  +G+  +PPN+ I  LAL +T + M
Sbjct: 8   IQLIAVLFFMSLLPLFAVMGTSFLKLSIVLSMLRNALGIQQIPPNMAIYGLALILTMFTM 67

Query: 100 SPTLDRS-IEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
           +P        +   P+        + I  ++  P+  F+ +NT +  +  F ++ H    
Sbjct: 68  APVGLAIRDNLAAHPVDWASPEVFSQISDQIIAPYHQFLSHNTSDTQIQFFSEIGHKIWP 127

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
               ++       +++P+F +S+L  +F+IGFL+ LPF+ ID+IV+ I++AMGMMM+ P 
Sbjct: 128 EQYQSELSKDSLLVMVPAFTMSQLIEAFKIGFLLYLPFVAIDLIVSNILLAMGMMMVSPM 187

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +I+LPFK++ F+L+ GW  L+  L+ SF
Sbjct: 188 TIALPFKLLIFILMGGWDKLIGQLMGSF 215


>gi|206895630|ref|YP_002246700.1| flagellar biosynthetic protein FliP [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738247|gb|ACI17325.1| flagellar biosynthetic protein FliP [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 218

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 62/213 (29%), Positives = 118/213 (55%), Gaps = 8/213 (3%)

Query: 33  LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
            S    +V+   + T+ ++AP  ++  T F R ++VF+ +R+ +G+   PP  V  +LAL
Sbjct: 13  GSGGLSMVQLIVLLTVFTLAPSFIMFFTSFLRILVVFAFMRSALGLQQFPPAQVFTALAL 72

Query: 93  FMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA 152
            +TF +M P   +  +    P    Q+     +    +P   +M    + ++L+    ++
Sbjct: 73  ILTFLIMGPVFSQVYQQAWVPYSQGQMDFQQFLSAAEKPVGDWMLKQVKPEELNTMASIS 132

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
            +  +N +        +  L  +FM+SEL+ +F +G L+ LPF+ +D+I+A+++M++GM 
Sbjct: 133 GTDPKNPN--------FTTLASAFMVSELKTAFTMGLLLYLPFIALDVIIASVLMSLGMF 184

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+PP  ISLP K++ FV  +GW  ++  LV+SF
Sbjct: 185 MIPPAMISLPLKILLFVAANGWDTVIMGLVRSF 217


>gi|15803389|ref|NP_289422.1| surface presentation of antigens protein SpaP [Escherichia coli
           O157:H7 EDL933]
 gi|15832979|ref|NP_311752.1| surface presentation of antigens protein SpaP [Escherichia coli
           O157:H7 str. Sakai]
 gi|168747669|ref|ZP_02772691.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7
           str. EC4113]
 gi|168753791|ref|ZP_02778798.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7
           str. EC4401]
 gi|168759981|ref|ZP_02784988.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7
           str. EC4501]
 gi|168766846|ref|ZP_02791853.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7
           str. EC4486]
 gi|168775730|ref|ZP_02800737.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7
           str. EC4196]
 gi|168778867|ref|ZP_02803874.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7
           str. EC4076]
 gi|168785699|ref|ZP_02810706.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7
           str. EC869]
 gi|168799986|ref|ZP_02824993.1| fliP family protein [Escherichia coli O157:H7 str. EC508]
 gi|195936471|ref|ZP_03081853.1| surface presentation of antigens protein SpaP [Escherichia coli
           O157:H7 str. EC4024]
 gi|208806889|ref|ZP_03249226.1| fliP family protein [Escherichia coli O157:H7 str. EC4206]
 gi|208812978|ref|ZP_03254307.1| fliP family protein [Escherichia coli O157:H7 str. EC4045]
 gi|208820470|ref|ZP_03260790.1| fliP family protein [Escherichia coli O157:H7 str. EC4042]
 gi|209399259|ref|YP_002272331.1| fliP family protein [Escherichia coli O157:H7 str. EC4115]
 gi|217326775|ref|ZP_03442858.1| fliP family protein [Escherichia coli O157:H7 str. TW14588]
 gi|254794806|ref|YP_003079643.1| surface presentation of antigens protein SpaP [Escherichia coli
           O157:H7 str. TW14359]
 gi|261226166|ref|ZP_05940447.1| putative integral membrane protein-component of typeIII secretion
           apparatus [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256580|ref|ZP_05949113.1| putative integral membrane protein-component of typeIII secretion
           apparatus [Escherichia coli O157:H7 str. FRIK966]
 gi|12517367|gb|AAG57981.1|AE005515_3 putative integral membrane protein-component of typeIII secretion
           apparatus [Escherichia coli O157:H7 str. EDL933]
 gi|13363197|dbj|BAB37148.1| type III secretion protein EpaP [Escherichia coli O157:H7 str.
           Sakai]
 gi|187768768|gb|EDU32612.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7
           str. EC4196]
 gi|188017894|gb|EDU56016.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7
           str. EC4113]
 gi|189003561|gb|EDU72547.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7
           str. EC4076]
 gi|189358717|gb|EDU77136.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7
           str. EC4401]
 gi|189363672|gb|EDU82091.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7
           str. EC4486]
 gi|189369400|gb|EDU87816.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7
           str. EC4501]
 gi|189373795|gb|EDU92211.1| type III secretion apparatus protein EpaP [Escherichia coli O157:H7
           str. EC869]
 gi|189377645|gb|EDU96061.1| fliP family protein [Escherichia coli O157:H7 str. EC508]
 gi|208726690|gb|EDZ76291.1| fliP family protein [Escherichia coli O157:H7 str. EC4206]
 gi|208734255|gb|EDZ82942.1| fliP family protein [Escherichia coli O157:H7 str. EC4045]
 gi|208740593|gb|EDZ88275.1| fliP family protein [Escherichia coli O157:H7 str. EC4042]
 gi|209160659|gb|ACI38092.1| fliP family protein [Escherichia coli O157:H7 str. EC4115]
 gi|217319142|gb|EEC27567.1| fliP family protein [Escherichia coli O157:H7 str. TW14588]
 gi|254594206|gb|ACT73567.1| putative integral membrane protein-component of typeIII secretion
           apparatus [Escherichia coli O157:H7 str. TW14359]
          Length = 221

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 60/213 (28%), Positives = 121/213 (56%), Gaps = 4/213 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  +    I ++ ++ P ++   TCF +F IVF I+R  +G+  VP N+ +  +AL ++ 
Sbjct: 2   SNSISLIAILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61

Query: 97  YVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-- 152
           +VM P             +  NN  +    ++     +  ++   +  + +S F  +   
Sbjct: 62  FVMMPVGKEIYYNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQKV 121

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
           +SS  N +I  +D+I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM
Sbjct: 122 NSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+ P +IS P K+I FV +DGW++L + L+  +
Sbjct: 182 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214


>gi|88704277|ref|ZP_01101991.1| flagellar biosynthetic protein FliP [Congregibacter litoralis KT71]
 gi|88701328|gb|EAQ98433.1| flagellar biosynthetic protein FliP [Congregibacter litoralis KT71]
          Length = 248

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 94/240 (39%), Positives = 145/240 (60%), Gaps = 6/240 (2%)

Query: 8   ALFLVTPELVFAKSSLHDVMNIPADLSIS--TWIVRTFGIFTILSIAPILLIMVTCFPRF 65
            + L+ PE   A++ +  V   P+    +  +  ++   + T+L++ P  LI +T F R 
Sbjct: 11  LMLLLMPETALAQAGIPLVSVQPSAAGGNDYSMSIQILLLMTLLTLIPAALITMTSFTRI 70

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
           +IV +ILR  +G    P N +I+ L+LF++ ++M+P  + +    +QP MN  +  + A+
Sbjct: 71  LIVLAILRQALGTAQTPSNQIILGLSLFLSLFIMAPVFETAWVTALQPYMNETVGFSEAL 130

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
                PF  FM   TRE DL LF ++      NT     D +   +L+PSF+ SEL+ +F
Sbjct: 131 DAAKIPFREFMFGQTRETDLLLFAELGGYEPFNT----RDDVPMVVLLPSFLTSELKTAF 186

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +IGFL+ +PFLIID++VA ++M+MGMMML P  ISLPFK++ FVLIDGWSL+   LV SF
Sbjct: 187 QIGFLMFVPFLIIDLVVAAVLMSMGMMMLSPMLISLPFKLMLFVLIDGWSLIAATLVTSF 246


>gi|13449100|ref|NP_085316.1| Type III secretion protein [Shigella flexneri 5a]
 gi|31983543|ref|NP_858286.1| surface presentation of antigens protein SpaP [Shigella flexneri 2a
           str. 301]
 gi|60415913|sp|P0A1L3|SPAP_SHIFL RecName: Full=Surface presentation of antigens protein spaP;
           AltName: Full=Spa24 protein
 gi|60415914|sp|P0A1L4|SPAP_SHISO RecName: Full=Surface presentation of antigens protein spaP;
           AltName: Full=Spa24 protein
 gi|13310648|gb|AAK18472.1|AF348706_161 Type III secretion protein [Shigella flexneri 5a]
 gi|152795|gb|AAA26544.1| spa24 [Shigella flexneri]
 gi|303893|dbj|BAA02829.1| spa24 [Shigella flexneri]
 gi|829080|dbj|BAA09162.1| ORF22 [Shigella sonnei]
 gi|12329097|emb|CAC05828.1| Spa24, component of the Mxi-Spa secretion machinery [Shigella
           flexneri]
 gi|18462535|gb|AAL72307.1| Spa24, component of the Mxi-Spa secretion machinery [Shigella
           flexneri 2a str. 301]
 gi|281603908|gb|ADA76891.1| surface presentation of antigens protein SpaP [Shigella flexneri
           2002017]
          Length = 216

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 57/209 (27%), Positives = 121/209 (57%), Gaps = 3/209 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +      +  ++ P L+   TC+ +F IVF ++R  +G+  VP N+ +  +AL M  +VM
Sbjct: 5   MSLIATLSFFTLLPFLVAAGTCYIKFSIVFVMVRNALGLQQVPSNMTLNGIALIMALFVM 64

Query: 100 SPTLDRSIEMGIQ-PLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
            P ++   E  +  P   + I++           +  +++ +T  + L+ F   +   + 
Sbjct: 65  KPIIEAGYENYLNGPQKFDTISDIVRFSDSGLMEYKQYLKKHTDLE-LARFFQRSEEENA 123

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
           +    +N+      L+P++ +SE++ +F+IGF + LPF+++D+++++I++A+GMMM+ P 
Sbjct: 124 DLKSAENNDYSLFSLLPAYALSEIKDAFKIGFYLYLPFVVVDLVISSILLALGMMMMSPI 183

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +IS+P K++ FV +DGW +L + L++ +I
Sbjct: 184 TISVPIKLVLFVALDGWGILSKALIEQYI 212


>gi|330876194|gb|EGH10343.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330963708|gb|EGH63968.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 218

 Score =  160 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 60/214 (28%), Positives = 108/214 (50%), Gaps = 2/214 (0%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
                ++    +   + + P+ ++ +T F +  +V  ++R  +G+   PPNLV+  +AL 
Sbjct: 3   GYQPNLIEIIVVVATIGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIALI 62

Query: 94  MTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           ++ YV +P +        G    + N          +  P    +     E +   F+  
Sbjct: 63  LSVYVTTPLIGDMYREVQGRDLSLQNVQQLEELGSALRPPLQAHLSKFANESERGFFVQA 122

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
             +             +  +LIP+F+ SEL R+FEIGFL+ +PFL++D++V+ ++MAMGM
Sbjct: 123 TETIWSPEARADLRDDDLVVLIPAFVSSELTRAFEIGFLLYIPFLVVDLLVSNVLMAMGM 182

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            M+ PT IS+P K+  FV + GWS L+  L+ S+
Sbjct: 183 SMVSPTLISIPLKIFLFVALSGWSRLMHGLILSY 216


>gi|320103855|ref|YP_004179446.1| type III secretion system inner membrane P protein [Isosphaera
           pallida ATCC 43644]
 gi|319751137|gb|ADV62897.1| type III secretion system inner membrane P protein [Isosphaera
           pallida ATCC 43644]
          Length = 247

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 72/243 (29%), Positives = 124/243 (51%), Gaps = 5/243 (2%)

Query: 8   ALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFII 67
            +      + FA++S                   + G+  I S+AP  ++M+T + R  I
Sbjct: 3   MVVATAAAVWFAQTSAGASEGWGPLPPDLARSAASVGVVAIASLAPAAVLMLTAYVRISI 62

Query: 68  VFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQR 127
           V ++LR  +G   +P N V++ L++ +T  VM P  D   E  I+P    ++    A   
Sbjct: 63  VLALLRQALGSPQIPGNQVVMMLSILLTILVMKPVADVVAERAIRPFAAGELDYAQAFAA 122

Query: 128 VAEPFWVFMRNN----TREKDLSLFMDMAHSSHRNTDITKN-DHIEYRILIPSFMISELR 182
            AEP   FM       + E+ L    D+A      T   +  D +  R++  +F+ISE+ 
Sbjct: 123 GAEPVKRFMVKQIVACSNERYLITLHDLAEPPETRTHQPEYLDELPLRVVAAAFLISEIN 182

Query: 183 RSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
            +  +GF I LPFL+ID++ A ++ AMG+ +LPP  +++P K++ FVL +GW L+ + L+
Sbjct: 183 VALWMGFAIYLPFLVIDLVTAAVLAAMGLYLLPPAQVAIPLKLMVFVLAEGWWLVAQTLL 242

Query: 243 KSF 245
           +SF
Sbjct: 243 RSF 245


>gi|85059283|ref|YP_454985.1| type III secretion system protein [Sodalis glossinidius str.
           'morsitans']
 gi|84779803|dbj|BAE74580.1| putative type III secretion apparatus [Sodalis glossinidius str.
           'morsitans']
          Length = 215

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 67/190 (35%), Positives = 112/190 (58%), Gaps = 3/190 (1%)

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN- 116
           M T F +  +V SILR  +G+  VPPN+ +  LAL ++ ++M+PT   +++    P+   
Sbjct: 26  MGTSFLKLAVVLSILRNALGIQQVPPNMALYGLALILSLFIMAPTAL-AVKAQWHPVAAP 84

Query: 117 -NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPS 175
            +    +    +   P+  F+R N  EK++  F  +   +       +       IL+P+
Sbjct: 85  GDTPWASGWDGKALMPYRQFLRRNADEKEIRYFHQLVTKTWPEEARRRVRPDSLLILLPA 144

Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235
           F +S+L ++F IG LI LPFL ID++V+ +++AMGMMM+ P +ISLPFK++ F+L  GW 
Sbjct: 145 FTVSQLSQAFRIGLLIYLPFLAIDLLVSNVLLAMGMMMVSPMTISLPFKLLIFMLAGGWD 204

Query: 236 LLVENLVKSF 245
           L++  LV+SF
Sbjct: 205 LILSQLVQSF 214


>gi|238798580|ref|ZP_04642057.1| Flagellar biosynthetic protein fliP [Yersinia mollaretii ATCC
           43969]
 gi|238717600|gb|EEQ09439.1| Flagellar biosynthetic protein fliP [Yersinia mollaretii ATCC
           43969]
          Length = 207

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 67/187 (35%), Positives = 112/187 (59%), Gaps = 6/187 (3%)

Query: 21  SSLHDVMNIPADLSISTWI--VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           + L  +++ P      +W   ++T  + T LS  P  L+M+T F R IIV  +LR  +G 
Sbjct: 25  AQLPGIISQPLANGGQSWSLPIQTLVLITSLSFLPAALLMMTSFTRIIIVLGLLRNALGT 84

Query: 79  GSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRN 138
            S PPN V++ LALF+TF++MSP  D+  +    P   ++I+   A+ + A+P   FM  
Sbjct: 85  PSAPPNQVMLGLALFLTFFIMSPVFDKVYQDAYLPFSQDKISMEVAMDKGAQPLREFMLR 144

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
            TRE DL+L+  +A+       +   + +  RIL+P+++ SEL+ +F+IGF + +PFLII
Sbjct: 145 QTRESDLALYARLANLP----PLEGPEMVPLRILLPAYVTSELKTAFQIGFTVFIPFLII 200

Query: 199 DMIVATI 205
           D++VA++
Sbjct: 201 DLVVASV 207


>gi|299822252|ref|ZP_07054138.1| flagellar biosynthesis protein FliP [Listeria grayi DSM 20601]
 gi|299815781|gb|EFI83019.1| flagellar biosynthesis protein FliP [Listeria grayi DSM 20601]
          Length = 255

 Score =  160 bits (405), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 60/214 (28%), Positives = 115/214 (53%), Gaps = 4/214 (1%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
              S     V  F I T+LS++  +++M T F   IIV  + R G+G  ++PPN V++ L
Sbjct: 43  NGTSGVNSNVSLFLIVTLLSLSASIVLMFTHFTYCIIVLGLTRQGLGATNLPPNQVLVGL 102

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           ALF+  ++M P  +   +   +P    +   +   +        ++  NT   D+++ + 
Sbjct: 103 ALFLAIFMMQPVANEWYQDVWKPGQKEEWKASKVWKETQPILTTYIAKNTYRHDINMML- 161

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
               +     + K +      L+P+F+++++ + F  G  I L F+ ID++V+T++M +G
Sbjct: 162 ---KAEGKKAVAKKEDASLMALMPAFILTQITQGFLTGMFIYLAFVFIDLVVSTLLMYLG 218

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           MMM+PP +ISLPFK++ F+ I G+ L+   + ++
Sbjct: 219 MMMVPPMTISLPFKILVFIFIGGYGLITNMMFQT 252


>gi|217965226|ref|YP_002350904.1| flagellar biosynthesis protein [Listeria monocytogenes HCC23]
 gi|217334496|gb|ACK40290.1| flagellar biosynthesis protein [Listeria monocytogenes HCC23]
 gi|307570215|emb|CAR83394.1| flagellar biosynthesis protein [Listeria monocytogenes L99]
          Length = 255

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 67/241 (27%), Positives = 128/241 (53%), Gaps = 6/241 (2%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
           +    +F      V A+S L  +     D   S+  V  F + T+LS++  +++M T F 
Sbjct: 18  FAISLVFFWPGVNVHAESWLDSLGVNGTDGVNSS--VALFVMVTVLSLSASIVLMFTHFT 75

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETT 123
             IIV  + R G+G  ++PPN V++ LALF++ ++M P +    +   +P      + + 
Sbjct: 76  YCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQKEDWSASK 135

Query: 124 AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRR 183
                      ++  NT + D+++ +     +     +TK +      L+P+F+++++ +
Sbjct: 136 VWDETQPLLTKYVAENTYKHDINMML----KAEGEDPVTKKEDAPLMALMPAFILTQITQ 191

Query: 184 SFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVK 243
            F  G  I L F+ ID+IV+T++M +GMMM+PP +ISLPFK++ F+ I G+ L+   + +
Sbjct: 192 GFLTGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVFIFIGGYGLITNMIFQ 251

Query: 244 S 244
           +
Sbjct: 252 T 252


>gi|51103119|gb|AAT96262.1| HrcR [Pseudomonas viridiflava]
 gi|51103161|gb|AAT96303.1| HrcR [Pseudomonas viridiflava]
 gi|51103202|gb|AAT96343.1| HrcR [Pseudomonas viridiflava]
          Length = 193

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 60/193 (31%), Positives = 108/193 (55%), Gaps = 2/193 (1%)

Query: 56  LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ--P 113
           +I+ T F +  +V  I R  +G+   PPN+ +  +AL  T ++M+P      +   +   
Sbjct: 1   MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFSEMGDRVKKLPE 60

Query: 114 LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILI 173
            ++      +A + V EP   FM  N      +  ++            K    +  +++
Sbjct: 61  HLDTFAAMESAGKHVVEPLRTFMTRNLDPDIQTHLLENTQRMWPKEMADKASRDDLLLVV 120

Query: 174 PSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDG 233
           P+F++SEL+  F+IGFLI +PF++ID+IV+ I++A+GM M+ P +ISLP K++ FVL+DG
Sbjct: 121 PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG 180

Query: 234 WSLLVENLVKSFI 246
           W+ L++ L  S++
Sbjct: 181 WTRLLDGLFYSYM 193


>gi|167584013|ref|ZP_02376401.1| type III secretion system protein [Burkholderia ubonensis Bu]
          Length = 216

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 121/206 (58%), Gaps = 2/206 (0%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
                 ++S+ P + ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ ++ Y+M+P
Sbjct: 10  LLIAVLVMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAP 69

Query: 102 TLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
               + +      ++ Q T+    A     EPF  F+  ++RE++   F+  A       
Sbjct: 70  IGFAAQQQLQGQALSPQPTQAMLQAFGAAKEPFRQFLAAHSREREKRFFLRSASVIWPKA 129

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
              +    +  +L P+F ++++  +F IGF++ + F+I+D+++A ++M+MGM  + PT++
Sbjct: 130 AAAQLRDDDLIVLAPAFTLAQMTDAFRIGFILYIAFIIVDLVIANVLMSMGMNQVQPTNV 189

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++PFK++ FV++DGWS LV  LV ++
Sbjct: 190 AIPFKLMLFVVMDGWSTLVHGLVLTY 215


>gi|257487956|ref|ZP_05641997.1| type III secretion system protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|289646626|ref|ZP_06477969.1| type III secretion system protein [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|320324517|gb|EFW80594.1| type III secretion system protein [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320328890|gb|EFW84889.1| type III secretion system protein [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330879022|gb|EGH13171.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|331008645|gb|EGH88701.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 218

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 60/214 (28%), Positives = 108/214 (50%), Gaps = 2/214 (0%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
                ++    +   + + P+ ++ +T F +  +V  ++R  +G+   PPNLV+  +AL 
Sbjct: 3   GYQPNLIEIILVVATIGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIALI 62

Query: 94  MTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           ++ YV +P +        G    + N          +  P    +     E +   F+  
Sbjct: 63  LSVYVTTPLIGDMYREVQGRDLSLQNVQQLEELGSALRPPLQAHLSKFANESERGFFVQA 122

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
             +             +  +LIP+F+ SEL R+FEIGFL+ +PFL++D++V+ ++MAMGM
Sbjct: 123 TETIWSPEARADLRDDDLVVLIPAFVSSELTRAFEIGFLLYIPFLVVDLLVSNVLMAMGM 182

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            M+ PT IS+P K+  FV + GWS L+  L+ S+
Sbjct: 183 SMVSPTLISIPLKIFLFVALSGWSRLMHGLILSY 216


>gi|237800781|ref|ZP_04589242.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331023639|gb|EGI03696.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 218

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 60/214 (28%), Positives = 108/214 (50%), Gaps = 2/214 (0%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
                ++    +   + + P+ ++ +T F +  +V  ++R  +G+   PPNLV+  +AL 
Sbjct: 3   GYQPNLIEIILVVATIGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIALI 62

Query: 94  MTFYVMSPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           ++ YV +P +        G    + N          +  P    +     E +   F+  
Sbjct: 63  LSVYVTTPLIGDMYRQVEGRDLSLQNVQQLEELGSALRPPLQAHLSKFANESERGFFVQA 122

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
             +             +  +LIP+F+ SEL R+FEIGFL+ +PFL++D++V+ ++MAMGM
Sbjct: 123 TETIWSPEARADLRDDDLVVLIPAFVSSELTRAFEIGFLLYIPFLVVDLLVSNVLMAMGM 182

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            M+ PT IS+P K+  FV + GWS L+  L+ S+
Sbjct: 183 SMVSPTLISIPLKIFLFVALSGWSRLMHGLILSY 216


>gi|254830333|ref|ZP_05234988.1| flagellar biosynthesis protein FliP [Listeria monocytogenes 10403S]
          Length = 255

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 63/238 (26%), Positives = 128/238 (53%), Gaps = 5/238 (2%)

Query: 7   FALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFI 66
            +L +  P +     S  D + +     +++  V  F + T+LS++  +++M T F   I
Sbjct: 20  ISLVVFWPGVNVHAESWMDSLGVNGTDGVNS-SVALFVLVTVLSLSASIVLMFTHFTYCI 78

Query: 67  IVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ 126
           IV  + R G+G  ++PPN V++ LALF++ ++M P +    +   +P    + + +    
Sbjct: 79  IVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLITAWYDDVYKPSQKEEWSASKVWD 138

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
                   ++  NT + D+++ +     +     +T  +      L+P+F+++++ + F 
Sbjct: 139 ETQPLLTKYVAENTYKHDINMML----KAEGEDPVTNKEDAPLMALMPAFILTQITQGFL 194

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
            G  I L F+ ID+IV+T++M +GMMM+PP +ISLPFK++ F+ I G+ L+   + ++
Sbjct: 195 TGMFIYLAFIFIDLIVSTLLMYLGMMMVPPMTISLPFKILVFIFIGGYGLITNMIFQT 252


>gi|292487016|ref|YP_003529886.1| Harpin secretion protein HrcR [Erwinia amylovora CFBP1430]
 gi|292900599|ref|YP_003539968.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|114152817|sp|Q46646|HRCR_ERWAM RecName: Full=Harpin secretion protein hrcR
 gi|89474870|gb|AAB06005.2| HrcR [Erwinia amylovora]
 gi|291200447|emb|CBJ47576.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291552433|emb|CBA19478.1| Harpin secretion protein HrcR [Erwinia amylovora CFBP1430]
 gi|312171085|emb|CBX79344.1| Harpin secretion protein HrcR [Erwinia amylovora ATCC BAA-2158]
          Length = 217

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 118/205 (57%), Gaps = 2/205 (0%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
                LS+ P+L+I+ TCF +  +V  I R  +G+  VPPN+ +  +AL  T +VM+P  
Sbjct: 13  LFLGALSLIPMLMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVF 72

Query: 104 DRSIEMGIQ--PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
           ++  +   Q    +++     T++     P   FM +NT    L    + +         
Sbjct: 73  NQMQQQFSQVPADLSSMDNLKTSVTNGVAPLQKFMTHNTDPDILIHLQENSVRMWPKEMS 132

Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
              +     ++IP+F++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SL
Sbjct: 133 DSVNKDNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSL 192

Query: 222 PFKVIFFVLIDGWSLLVENLVKSFI 246
           P K++ FVLI+GW+ L++ L  S++
Sbjct: 193 PLKMLLFVLINGWTRLLDGLFYSYL 217


>gi|188532666|ref|YP_001906463.1| type III secretion system protein [Erwinia tasmaniensis Et1/99]
 gi|188027708|emb|CAO95561.1| HrcR protein (hrp cluster) [Erwinia tasmaniensis Et1/99]
          Length = 217

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 65/205 (31%), Positives = 117/205 (57%), Gaps = 2/205 (0%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
                LS+ P+L+I+ TCF +  +V  I R  +G+  VPPN+ +  +AL  T +VM+P  
Sbjct: 13  LFLGALSLIPMLMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVF 72

Query: 104 DRSIEMGIQ--PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
           ++  +   Q    +++  +   ++     P   FM +NT    L    + +         
Sbjct: 73  NQMQQQFSQSPADLSSMDSLKNSVTHGVAPLQKFMTHNTDPDILIHLQENSVRMWPKEMS 132

Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
                    ++IP+F++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SL
Sbjct: 133 DSVSKDNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSL 192

Query: 222 PFKVIFFVLIDGWSLLVENLVKSFI 246
           P K++ FVLI+GW+ L++ L  S++
Sbjct: 193 PLKMLLFVLINGWTRLLDGLFYSYL 217


>gi|126444918|ref|YP_001063272.1| type III secretion system protein [Burkholderia pseudomallei 668]
 gi|167743328|ref|ZP_02416102.1| type III secretion system protein [Burkholderia pseudomallei 14]
 gi|167898938|ref|ZP_02486339.1| type III secretion system protein [Burkholderia pseudomallei 7894]
 gi|167923471|ref|ZP_02510562.1| type III secretion system protein [Burkholderia pseudomallei
           BCC215]
 gi|217422186|ref|ZP_03453689.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 576]
 gi|237510472|ref|ZP_04523187.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei MSHR346]
 gi|126224409|gb|ABN87914.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 668]
 gi|217394417|gb|EEC34436.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 576]
 gi|235002677|gb|EEP52101.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei MSHR346]
          Length = 216

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 121/206 (58%), Gaps = 2/206 (0%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
                 ++S+ P + ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ ++ Y+M+P
Sbjct: 10  LLIAVLVMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAP 69

Query: 102 TLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
               + +      ++ Q T+    A     EPF  F+  ++RE++   F+  A       
Sbjct: 70  IGFAAQQQLQGQALSPQPTQAMLQAFGAAKEPFRRFLAAHSREREKRFFLRSASVIWPQA 129

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
              +    +  +L P+F ++++  +F IGF++ + F+I+D+++A ++M+MGM  + PT++
Sbjct: 130 AAAQLRDDDLIVLAPAFTLAQMTDAFRIGFILYIAFIIVDLVIANVLMSMGMNQVQPTNV 189

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++PFK++ FV++DGWS LV  LV ++
Sbjct: 190 AIPFKLMLFVVMDGWSTLVHGLVLTY 215


>gi|83718233|ref|YP_438951.1| type III secretion system protein [Burkholderia thailandensis E264]
 gi|167577333|ref|ZP_02370207.1| type III secretion system protein [Burkholderia thailandensis
           TXDOH]
 gi|167615481|ref|ZP_02384116.1| type III secretion system protein [Burkholderia thailandensis Bt4]
 gi|257142055|ref|ZP_05590317.1| type III secretion system protein [Burkholderia thailandensis E264]
 gi|83652058|gb|ABC36122.1| type III secretion inner membrane protein SctR [Burkholderia
           thailandensis E264]
          Length = 216

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 121/206 (58%), Gaps = 2/206 (0%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
                 ++S+ P + ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ ++ Y+M+P
Sbjct: 10  LLIAVLVMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAP 69

Query: 102 TLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
               + +      ++ Q T+    A     EPF  F+  ++RE++   F+  A       
Sbjct: 70  IGFAAQQQLQGQALSPQPTQAMLQAFGAAKEPFRQFLAAHSREREKRFFLRSASVVWPKA 129

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
              +    +  +L P+F ++++  +F IGF++ + F+I+D+++A ++M+MGM  + PT++
Sbjct: 130 AAAQLREDDLIVLAPAFTLAQMTDAFRIGFILYIAFVIVDLVIANVLMSMGMNQVQPTNV 189

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++PFK++ FV++DGWS LV  LV ++
Sbjct: 190 AIPFKLMLFVVMDGWSTLVHGLVLTY 215


>gi|118592626|ref|ZP_01550016.1| Type III secretory pathway, component EscR [Stappia aggregata IAM
           12614]
 gi|118434677|gb|EAV41328.1| Type III secretory pathway, component EscR [Stappia aggregata IAM
           12614]
          Length = 212

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/209 (30%), Positives = 114/209 (54%), Gaps = 2/209 (0%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +         +  P + ++ T F +  +V  ++R  +G+  +PPN+ + +LA+ ++ Y+M
Sbjct: 4   LNLILALGAAAFVPFMAVVATSFIKIAVVLLLVRNALGVQQIPPNMALNALAIILSGYIM 63

Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
           +P   ++  +  +   N  N      A      P   F+  +   ++   F+        
Sbjct: 64  APVFFQTFMIVQEGNFNFGNLEGLQEAYNASKGPLIEFLDKHAEGREKLFFLKATAELWP 123

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
                  D     +++P+F IS+LR +FEIGFL+ LPF+ ID++V+ I++AMGMMM+ P 
Sbjct: 124 ADLAAMADENSIFVILPAFTISQLREAFEIGFLLYLPFVAIDLVVSNILLAMGMMMVSPL 183

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +ISLPFK+  FV++DGWS L+  LVK++I
Sbjct: 184 TISLPFKLFLFVMVDGWSRLILGLVKTYI 212


>gi|330953282|gb|EGH53542.1| type III secretion system protein YscR [Pseudomonas syringae Cit 7]
          Length = 218

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 60/214 (28%), Positives = 108/214 (50%), Gaps = 2/214 (0%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
                ++    +   + + P+ ++ +T F +  +V  ++R  +G+   PPNLV+  +AL 
Sbjct: 3   GYQPNLIEIILVVATIGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIALI 62

Query: 94  MTFYVMSPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           ++ YV +P +        G    + N          +  P    +     E +   F+  
Sbjct: 63  LSVYVTTPLIGDMYRQVQGRDLSLQNVQQLEELGSALRPPLQAHLSKFANESERGFFVQA 122

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
             +             +  +LIP+F+ SEL R+FEIGFL+ +PFL++D++V+ ++MAMGM
Sbjct: 123 TETIWSPEARADLRDDDLVVLIPAFVSSELTRAFEIGFLLYIPFLVVDLLVSNVLMAMGM 182

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            M+ PT IS+P K+  FV + GWS L+  L+ S+
Sbjct: 183 SMVSPTLISIPLKIFLFVALSGWSRLMHGLILSY 216


>gi|167566298|ref|ZP_02359214.1| type III secretion system protein [Burkholderia oklahomensis EO147]
 gi|167573400|ref|ZP_02366274.1| type III secretion system protein [Burkholderia oklahomensis C6786]
          Length = 216

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 121/206 (58%), Gaps = 2/206 (0%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
                 ++S+ P + ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ ++ Y+M+P
Sbjct: 10  LLIAVLVMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAP 69

Query: 102 TLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
               + +      ++ Q T+    A     EPF  F+  ++RE++   F+  A       
Sbjct: 70  IGFAAQQQLQGQALSPQPTQAMLQAFGAAKEPFRQFLAAHSREREKRFFLRSASVIWPKA 129

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
              +    +  +L P+F ++++  +F IGF++ + F+I+D+++A ++M+MGM  + PT++
Sbjct: 130 AAAQLREDDLIVLAPAFTLAQMTDAFRIGFILYIAFIIVDLVIANVLMSMGMNQVQPTNV 189

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++PFK++ FV++DGWS LV  LV ++
Sbjct: 190 AIPFKLMLFVVMDGWSTLVHGLVLTY 215


>gi|167828878|ref|ZP_02460349.1| type III secretion system protein [Burkholderia pseudomallei 9]
 gi|226198433|ref|ZP_03794001.1| type III secretion inner membrane protein SctR [Burkholderia
           pseudomallei Pakistan 9]
 gi|225929490|gb|EEH25509.1| type III secretion inner membrane protein SctR [Burkholderia
           pseudomallei Pakistan 9]
          Length = 216

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 121/206 (58%), Gaps = 2/206 (0%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
                 ++S+ P + ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ ++ Y+M+P
Sbjct: 10  LLIAVLVMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAP 69

Query: 102 TLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
               + +      M+ Q T+    A     EPF  F+  ++RE++   F+  A       
Sbjct: 70  IGFAAQQQLQGQAMSPQPTQAMLQAFGAAKEPFRRFLAAHSREREKRFFLRSASVIWPQA 129

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
              +    +  +L P+F ++++  +F IGF++ + F+I+D+++A ++M+MGM  + PT++
Sbjct: 130 AAAQLRDDDLIVLAPAFTLAQMTDAFRIGFILYIAFIIVDLVIANVLMSMGMNQVQPTNV 189

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++PFK++ FV++DGWS LV  LV ++
Sbjct: 190 AIPFKLMLFVVMDGWSTLVHGLVLTY 215


>gi|298487104|ref|ZP_07005154.1| type III secretion system inner membrane protein [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298158347|gb|EFH99417.1| type III secretion system inner membrane protein [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 218

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 60/214 (28%), Positives = 108/214 (50%), Gaps = 2/214 (0%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
                ++    +   + + P+ ++ +T F +  +V  ++R  +G+   PPNLV+  +AL 
Sbjct: 3   GYQPNLIEIILVVATIGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIALI 62

Query: 94  MTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           ++ YV +P +        G    + N          +  P    +     E +   F+  
Sbjct: 63  LSVYVTTPLIGDMYREVQGRDLSLQNVQQLEELGSALRPPLQAHLSKFANESERGFFVQA 122

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
             +             +  +LIP+F+ SEL R+FEIGFL+ +PFL++D++V+ ++MAMGM
Sbjct: 123 TETIWSPEARADLCDDDLVVLIPAFVSSELTRAFEIGFLLYIPFLVVDLLVSNVLMAMGM 182

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            M+ PT IS+P K+  FV + GWS L+  L+ S+
Sbjct: 183 SMVSPTLISIPLKIFLFVALSGWSRLMHGLILSY 216


>gi|256259402|gb|ACU65039.1| HrcR [Pseudomonas syringae pv. syringae]
          Length = 208

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 66/207 (31%), Positives = 113/207 (54%), Gaps = 2/207 (0%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
                  LS+ P LL++ T F +   V  I R  +G+  VPPN+ +  +AL  T +VM+P
Sbjct: 2   LALFLGALSLLPFLLVVCTSFLKIASVLLITRNAIGVQQVPPNMALYGIALAATLFVMAP 61

Query: 102 TLDRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
                  +       + +    T + + +  P   FM +N     L+   + A       
Sbjct: 62  VFSEIATIAQDNPLQLRDTRDLTRSAKALLAPLQAFMNHNVDPDVLTHLHENALRMWPKD 121

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                   +  +LIP+F++SEL+ +FEIGFLI +PF++ID+IV+ +++A+GM M+ P +I
Sbjct: 122 MAAAASRGDLLLLIPAFVLSELQAAFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTI 181

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
           SLP K++ FVL+ GW+ L+++L  S++
Sbjct: 182 SLPLKILLFVLVSGWTRLLDSLFYSYM 208


>gi|259909718|ref|YP_002650074.1| type III secretion system protein [Erwinia pyrifoliae Ep1/96]
 gi|224965340|emb|CAX56872.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
           pathway-harpin secretion protein [Erwinia pyrifoliae
           Ep1/96]
 gi|283479804|emb|CAY75720.1| Harpin secretion protein HrcR [Erwinia pyrifoliae DSM 12163]
 gi|310766418|gb|ADP11368.1| type III secretion system protein [Erwinia sp. Ejp617]
          Length = 217

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 117/205 (57%), Gaps = 2/205 (0%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
                LS+ P+L+I+ TCF +  +V  I R  +G+  VPPN+ +  +AL  T +VM+P  
Sbjct: 13  LFLGALSLIPMLMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVF 72

Query: 104 DRSIEMGIQ--PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
           ++  +   Q    +++     T++     P   FM +NT    L    + +         
Sbjct: 73  NQMQQQFSQVPADLSSMDNLKTSVSNGVAPLQKFMTHNTDPDILIHLQENSVRMWPKEMS 132

Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
                    ++IP+F++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SL
Sbjct: 133 DSVSKDNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSL 192

Query: 222 PFKVIFFVLIDGWSLLVENLVKSFI 246
           P K++ FVLI+GW+ L++ L  S++
Sbjct: 193 PLKMLLFVLINGWTRLLDGLFYSYL 217


>gi|238759389|ref|ZP_04620554.1| Surface presentation of antigens protein spaP [Yersinia aldovae
           ATCC 35236]
 gi|238702416|gb|EEP94968.1| Surface presentation of antigens protein spaP [Yersinia aldovae
           ATCC 35236]
          Length = 223

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 59/211 (27%), Positives = 116/211 (54%), Gaps = 4/211 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +    I    ++ P ++   TC+ +  IV  ++R  MG+  VP +L +  +AL ++ +VM
Sbjct: 8   IPLLAIIAFSTLLPFIIAAGTCYLKISIVLIMVRNAMGVQQVPSSLTLNGIALLLSLFVM 67

Query: 100 SPTLDRSIEMG--IQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
            P +    +     Q   +N  +    ++     +  +++  +  + L+ F  +      
Sbjct: 68  MPVIQDVNQYMRTEQVDFSNVDSVDNFVEGGLGSYKAYLKKYSDPELLNFFESLQQGRSE 127

Query: 158 NTDITKND--HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
              + + D        L+P++ +SE++ +FEIGF I LPF++ID+I+++I++A+GMMM+ 
Sbjct: 128 EQAMDEADTREPTLFSLLPAYALSEIKSAFEIGFYIYLPFVVIDLIISSILLALGMMMMS 187

Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           P +IS+P K+I FV IDGWSL+ + L+  ++
Sbjct: 188 PVTISVPVKLILFVAIDGWSLISKGLIMQYM 218


>gi|326794362|ref|YP_004312182.1| Yop virulence translocation R [Marinomonas mediterranea MMB-1]
 gi|326545126|gb|ADZ90346.1| Yop virulence translocation R [Marinomonas mediterranea MMB-1]
          Length = 217

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 71/205 (34%), Positives = 114/205 (55%), Gaps = 2/205 (0%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
                LS+ PI+LI+ + F +  +V  I R  MG+  VPPN+ I  +AL  T +VM+P  
Sbjct: 13  LFLGALSLLPIMLIVCSAFLKISMVLMITRNAMGVQQVPPNMAIYGIALAATMFVMAPVF 72

Query: 104 DRSIEMGIQ--PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
                   +  P  ++     T+  ++  P   FM  N+     +  MD           
Sbjct: 73  SDIGNKVKETPPDFSSLEGMQTSANKIVGPLQAFMSRNSNPDVTTHMMDNTARLWPKEMA 132

Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
           +K    +  I+IPSFM+SEL+   +IGFLI +PF++ID+IV+ +++A+GM M+ P +ISL
Sbjct: 133 SKVTKDDLMIVIPSFMLSELKAGLQIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTISL 192

Query: 222 PFKVIFFVLIDGWSLLVENLVKSFI 246
           P K++ FVL+DGW  L++ L  ++I
Sbjct: 193 PLKILLFVLVDGWGRLLDGLFYTYI 217


>gi|289624375|ref|ZP_06457329.1| type III secretion system protein [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|330868641|gb|EGH03350.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 218

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 59/214 (27%), Positives = 107/214 (50%), Gaps = 2/214 (0%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
                ++    +   + + P+ ++ +T F +  +V  ++R  +G+   PPNLV+  +AL 
Sbjct: 3   GYQPNLIEIILVVATIGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIALI 62

Query: 94  MTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           ++ YV +P +        G    + N          +  P    +     E +   F+  
Sbjct: 63  LSVYVTTPLIGDMYREVQGRDLSLQNVQQLEELGSALRPPLQAHLSKFANESERGFFVQA 122

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
             +             +  +LIP+F+ SEL R+FEIGFL+ +PFL++D++V+ ++M MGM
Sbjct: 123 TETIWSPEARADLRDDDLVVLIPAFVSSELTRAFEIGFLLYIPFLVVDLLVSNVLMTMGM 182

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            M+ PT IS+P K+  FV + GWS L+  L+ S+
Sbjct: 183 SMVSPTLISIPLKIFLFVALSGWSRLMHGLILSY 216


>gi|34498458|ref|NP_902673.1| flagellar biosynthesis protein FliP [Chromobacterium violaceum ATCC
           12472]
 gi|34104313|gb|AAQ60672.1| flagellar biosynthetic protein fliP [Chromobacterium violaceum ATCC
           12472]
          Length = 248

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 73/204 (35%), Positives = 124/204 (60%), Gaps = 4/204 (1%)

Query: 41  RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100
           +   + T L + P+L++M+T F RF+IV S+LR  +G+    PN +I  +AL +T  VM 
Sbjct: 45  QILILMTALGLLPVLVLMMTSFTRFVIVLSLLRQALGLQQGLPNRLITGVALILTLLVMR 104

Query: 101 PTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD 160
           P   +     + P   ++IT   A++  A+P   FM   T +  L+    ++       +
Sbjct: 105 PVGLQVWNEAMVPFDQDKITMQQALEIAAKPVSRFMLAQTGKTALAQVARLSG----EEN 160

Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
           + + +   + + + +F++SEL+ +F+IG ++ +PFL+ID++V++++MAMGMMML P  IS
Sbjct: 161 VARPEDHAFTVKLAAFVLSELKTAFQIGCMLFIPFLVIDLVVSSVLMAMGMMMLSPLVIS 220

Query: 221 LPFKVIFFVLIDGWSLLVENLVKS 244
           LP K++ FVL+DGWSL V  LV S
Sbjct: 221 LPLKLLLFVLVDGWSLTVNTLVTS 244


>gi|53716433|ref|YP_106203.1| type III secretion system protein [Burkholderia mallei ATCC 23344]
 gi|53722640|ref|YP_111625.1| type III secretion system protein [Burkholderia pseudomallei
           K96243]
 gi|76819625|ref|YP_335835.1| type III secretion system protein [Burkholderia pseudomallei 1710b]
 gi|124381437|ref|YP_001025753.1| type III secretion system protein [Burkholderia mallei NCTC 10229]
 gi|126447834|ref|YP_001077838.1| type III secretion system protein [Burkholderia mallei NCTC 10247]
 gi|126457083|ref|YP_001076228.1| type III secretion system protein [Burkholderia pseudomallei 1106a]
 gi|134282115|ref|ZP_01768821.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 305]
 gi|167004563|ref|ZP_02270321.1| type III secretion inner membrane protein SctR [Burkholderia mallei
           PRL-20]
 gi|167724361|ref|ZP_02407597.1| type III secretion system protein [Burkholderia pseudomallei DM98]
 gi|167820506|ref|ZP_02452186.1| type III secretion system protein [Burkholderia pseudomallei 91]
 gi|167850341|ref|ZP_02475849.1| type III secretion system protein [Burkholderia pseudomallei B7210]
 gi|167907266|ref|ZP_02494471.1| type III secretion system protein [Burkholderia pseudomallei NCTC
           13177]
 gi|167915628|ref|ZP_02502719.1| type III secretion system protein [Burkholderia pseudomallei 112]
 gi|238563924|ref|ZP_04610801.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia mallei GB8 horse 4]
 gi|242311808|ref|ZP_04810825.1| type III secretion inner membrane protein SctR [Burkholderia
           pseudomallei 1106b]
 gi|254176224|ref|ZP_04882882.1| type III secretion inner membrane protein SctR [Burkholderia mallei
           ATCC 10399]
 gi|254185081|ref|ZP_04891670.1| type III secretion inner membrane protein SctR [Burkholderia
           pseudomallei 1655]
 gi|254186948|ref|ZP_04893464.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254194505|ref|ZP_04900937.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei S13]
 gi|254201084|ref|ZP_04907449.1| type III secretion inner membrane protein SctR [Burkholderia mallei
           FMH]
 gi|254205049|ref|ZP_04911402.1| type III secretion inner membrane protein SctR [Burkholderia mallei
           JHU]
 gi|254262389|ref|ZP_04953254.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 1710a]
 gi|254301371|ref|ZP_04968815.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 406e]
 gi|254359170|ref|ZP_04975442.1| type III secretion inner membrane protein SctR [Burkholderia mallei
           2002721280]
 gi|52213054|emb|CAH39092.1| putative type III secretion protein [Burkholderia pseudomallei
           K96243]
 gi|52422403|gb|AAU45973.1| type III secretion inner membrane protein SctR [Burkholderia mallei
           ATCC 23344]
 gi|76584098|gb|ABA53572.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 1710b]
 gi|126230851|gb|ABN94264.1| type III secretion inner membrane protein SctR [Burkholderia
           pseudomallei 1106a]
 gi|126240688|gb|ABO03800.1| type III secretion inner membrane protein SctR [Burkholderia mallei
           NCTC 10247]
 gi|134246644|gb|EBA46732.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 305]
 gi|147748696|gb|EDK55771.1| type III secretion inner membrane protein SctR [Burkholderia mallei
           FMH]
 gi|147754635|gb|EDK61699.1| type III secretion inner membrane protein SctR [Burkholderia mallei
           JHU]
 gi|148028357|gb|EDK86317.1| type III secretion inner membrane protein SctR [Burkholderia mallei
           2002721280]
 gi|157811552|gb|EDO88722.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 406e]
 gi|157934632|gb|EDO90302.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|160697266|gb|EDP87236.1| type III secretion inner membrane protein SctR [Burkholderia mallei
           ATCC 10399]
 gi|169651256|gb|EDS83949.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei S13]
 gi|184215673|gb|EDU12654.1| type III secretion inner membrane protein SctR [Burkholderia
           pseudomallei 1655]
 gi|238519668|gb|EEP83137.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia mallei GB8 horse 4]
 gi|242135047|gb|EES21450.1| type III secretion inner membrane protein SctR [Burkholderia
           pseudomallei 1106b]
 gi|243060178|gb|EES42364.1| type III secretion inner membrane protein SctR [Burkholderia mallei
           PRL-20]
 gi|254213391|gb|EET02776.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 1710a]
 gi|261826319|gb|ABM99126.2| type III secretion inner membrane protein SctR [Burkholderia mallei
           NCTC 10229]
          Length = 216

 Score =  159 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 58/206 (28%), Positives = 121/206 (58%), Gaps = 2/206 (0%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
                 ++S+ P + ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ ++ Y+M+P
Sbjct: 10  LLIAVLVMSMVPFIAMVVTSYAKIVVVLGLLRNALGVQQVPPNMVLNGIAILVSLYIMAP 69

Query: 102 TLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
               + +      ++ Q T+    A     EPF  F+  ++RE++   F+  A       
Sbjct: 70  IGFAAQQQLQGQALSPQPTQAMLQAFGAAKEPFRRFLAAHSREREKRFFLRSASVIWPQA 129

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
              +    +  +L P+F ++++  +F IGF++ + F+I+D+++A ++M+MGM  + PT++
Sbjct: 130 AAAQLREDDLIVLAPAFTLAQMTDAFRIGFILYIAFIIVDLVIANVLMSMGMNQVQPTNV 189

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++PFK++ FV++DGWS LV  LV ++
Sbjct: 190 AIPFKLMLFVVMDGWSTLVHGLVLTY 215


>gi|212702682|ref|ZP_03310810.1| hypothetical protein DESPIG_00710 [Desulfovibrio piger ATCC 29098]
 gi|212673954|gb|EEB34437.1| hypothetical protein DESPIG_00710 [Desulfovibrio piger ATCC 29098]
          Length = 218

 Score =  159 bits (402), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 66/196 (33%), Positives = 114/196 (58%), Gaps = 3/196 (1%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P LL+MVT + + ++V S++R  +G+  VPP +V+  LA+ +T ++M+P    +  +  +
Sbjct: 22  PFLLMMVTSYVKIVVVTSLVRNALGVQQVPPAMVMNGLAIILTVFIMAPVAMDTKALLEE 81

Query: 113 PLMNNQITETTAIQ---RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169
              +     +  ++    V+ P   F+  NT    L  FM  A                 
Sbjct: 82  QRFSANPKPSEMLETLQAVSPPLRQFLEKNTSPAILQEFMGTAQRIWPEHQRQSITRDNL 141

Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
            IL+P+F I+EL ++F+IGFL+ LPF+ ID+I++ +++AMGMMM+ P +ISLPFK++ FV
Sbjct: 142 FILVPAFTITELTKAFQIGFLLYLPFVAIDLIISNVLLAMGMMMVSPMTISLPFKLLLFV 201

Query: 230 LIDGWSLLVENLVKSF 245
            +DGW  + + L+ S+
Sbjct: 202 TLDGWLKISQGLLLSY 217


>gi|332526333|ref|ZP_08402460.1| type III secretion system protein YscR [Rubrivivax benzoatilyticus
           JA2]
 gi|332110470|gb|EGJ10793.1| type III secretion system protein YscR [Rubrivivax benzoatilyticus
           JA2]
          Length = 220

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 73/209 (34%), Positives = 120/209 (57%), Gaps = 6/209 (2%)

Query: 43  FGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT 102
                +L++AP + +MVT F + ++V S+LR  +G+  VPPN+V+  +AL ++ YVM P 
Sbjct: 12  LITVVLLALAPFVGVMVTSFTKIVVVLSLLRNALGLQQVPPNVVLNGMALVLSIYVMYPV 71

Query: 103 LDRSIEMGIQPLMNNQIT------ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
             +  E   Q    +Q           A     EP   F+  ++   +   F++    + 
Sbjct: 72  GLQMAERVGQSQSQSQAAGRGTEALLAAADAAKEPLREFLIQHSNPDERRFFLETLRRNL 131

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
                      +  +++P+F+++EL  +F+IGFLI LPFL+ID++V+ I+MA+GMMML P
Sbjct: 132 SPAQQQALSERDLVVVVPAFVVNELSVAFQIGFLIFLPFLVIDLVVSNILMALGMMMLSP 191

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           T++SLPFK++ FVL+DGW  L   LV S+
Sbjct: 192 TTVSLPFKLLLFVLVDGWVKLSHGLVLSY 220


>gi|167467561|ref|ZP_02332265.1| type III secretion system protein [Yersinia pestis FV-1]
          Length = 333

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 68/199 (34%), Positives = 114/199 (57%), Gaps = 3/199 (1%)

Query: 41  RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100
           +   +  +LS+ P+L++M T F +  +VFS+LR  +G+  VPPN+ I  LAL +T ++M+
Sbjct: 29  QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA 88

Query: 101 PTLDRSIEMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
           P             ++N I        Q    P+  F++ NT  + ++ F D+  +    
Sbjct: 89  PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE 148

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
                       IL+P+F +S+L  +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +
Sbjct: 149 RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNILLAMGMMMVSPMT 208

Query: 219 ISLPFKVIFFVLIDGWSLL 237
           +SLPFK++ FVL  GW ++
Sbjct: 209 LSLPFKLLVFVL-SGWLVI 226


>gi|182440971|dbj|BAG24096.1| HrcR [Pseudomonas cichorii]
          Length = 193

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 60/193 (31%), Positives = 112/193 (58%), Gaps = 2/193 (1%)

Query: 56  LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ--P 113
           +I+ T F +  +V  I R  +G+   PPN+ +  +AL  T ++M+P  +   +   +   
Sbjct: 1   MIICTAFLKIAMVLLITRNAIGVQQAPPNMALYGIALAATLFIMAPVFNEMGQRVKKLPE 60

Query: 114 LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILI 173
            ++N     +A + V EP  +FM  N      +  ++           ++    +  +++
Sbjct: 61  RLDNFAAMESAGKHVIEPLRLFMTRNIDPDIQTHLLENTQRMWPKEMSSQASRDDLLLVV 120

Query: 174 PSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDG 233
           P+F++SEL+  F+IGFLI +PF++ID+IV+ I++A+GM M+ P +ISLP K++ FVL+DG
Sbjct: 121 PAFVLSELQAGFQIGFLIYIPFIVIDLIVSNILLALGMQMVAPMTISLPLKILLFVLVDG 180

Query: 234 WSLLVENLVKSFI 246
           W+ L++ L  S++
Sbjct: 181 WTRLLDGLFYSYM 193


>gi|34498062|ref|NP_902277.1| type III secretion system protein [Chromobacterium violaceum ATCC
           12472]
 gi|34332839|gb|AAQ60277.2| type III secretion system EscR protein [Chromobacterium violaceum
           ATCC 12472]
          Length = 216

 Score =  158 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 68/215 (31%), Positives = 123/215 (57%), Gaps = 2/215 (0%)

Query: 33  LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
           +S+    ++   +   LSI P+L+++ T F +  +VF++LR  +G+  +PPN+ +  LAL
Sbjct: 1   MSLLDQPLQLIVLLFALSILPLLVVLGTSFLKLAVVFALLRNALGIQQIPPNIALYGLAL 60

Query: 93  FMTFYVMSPTLDRSIEMGI-QPLMNNQITETTAIQRVAE-PFWVFMRNNTREKDLSLFMD 150
            +T ++M+P      +  I  P+          ++     P+ VF+  NT  + +  F D
Sbjct: 61  ILTLFIMAPIGLEIQDNLIAHPIKIESPAFIQQVESGVFTPYRVFLERNTAPEQVHFFAD 120

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           + H         +       +L+P+F +S+L  +F+IG L+ LPF+ ID++V+ +++AMG
Sbjct: 121 IGHQIWPEKYQQRIPDNSLLVLMPAFTVSQLIEAFKIGLLLFLPFVAIDLVVSNVLLAMG 180

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMM+ P +IS+P K++ FVL++GW  L+  LV SF
Sbjct: 181 MMMVSPMTISMPLKLLVFVLMNGWEKLLGQLVLSF 215


>gi|120609152|ref|YP_968830.1| type III secretion system protein [Acidovorax citrulli AAC00-1]
 gi|120587616|gb|ABM31056.1| Yop virulence translocation R [Acidovorax citrulli AAC00-1]
 gi|251825694|gb|ACT20915.1| type III secretion system structural protein [Acidovorax citrulli]
 gi|255047057|gb|AAW81014.2| HrcR [Acidovorax citrulli]
          Length = 220

 Score =  158 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 55/197 (27%), Positives = 111/197 (56%), Gaps = 4/197 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI- 111
           P   ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ ++ YVM+P    + +    
Sbjct: 23  PFAAMIVTSYTKVVVVLGLLRNALGVQQVPPNMVLNGIAIIISVYVMAPVAMEASDRMQM 82

Query: 112 ---QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIE 168
                  +N      A     EPF  F+  +    + + F+  A +             +
Sbjct: 83  LPPSAQSSNTQQMLAAASAAREPFRKFLDKHADAAEKAFFLKSAQALWPEERARSLQADD 142

Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
             +L P+F+++EL  +F IGFL+ L F+I+++++A +++AMG+  + PT++++PFK++ F
Sbjct: 143 LVVLAPAFLLTELTAAFRIGFLLYLAFIIVELVIANVLLAMGLSQVSPTNVAIPFKLLLF 202

Query: 229 VLIDGWSLLVENLVKSF 245
           V++DGWS ++  LV ++
Sbjct: 203 VVLDGWSQVMHGLVMTY 219


>gi|160875390|ref|YP_001554706.1| type III secretion system protein [Shewanella baltica OS195]
 gi|160860912|gb|ABX49446.1| Yop virulence translocation R [Shewanella baltica OS195]
 gi|315267590|gb|ADT94443.1| Yop virulence translocation R [Shewanella baltica OS678]
          Length = 216

 Score =  158 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 66/208 (31%), Positives = 111/208 (53%), Gaps = 2/208 (0%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   +   LS+ P+  +M T F +  IVFS+LR  +G+  +PPN+ I  LAL +T + M
Sbjct: 8   IQLIIMLFCLSLLPLFAVMGTSFLKLAIVFSMLRNALGIQQIPPNMAIYGLALILTLFTM 67

Query: 100 SPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
           +P      +       + +              P+  F+  NT    +  F ++ H    
Sbjct: 68  APVGMAINDNLKATPIVFDAPNVFEQINTEAIAPYRAFLEKNTSNTQIEFFANIGHKVWP 127

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
                        +++P+F +S+L  +F+IG LI LPF+ ID+IV+ I++AMGMMM+ P 
Sbjct: 128 EKYQQVLTKDSLLVMVPAFTMSQLIEAFKIGLLIYLPFVAIDLIVSNILLAMGMMMVSPM 187

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +I+LPFK++ F+L+ GW  L+  L+ SF
Sbjct: 188 TIALPFKLLIFILMGGWEKLISQLMMSF 215


>gi|292899278|ref|YP_003538647.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291199126|emb|CBJ46240.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
          Length = 223

 Score =  158 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 57/212 (26%), Positives = 115/212 (54%), Gaps = 6/212 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +    + +  ++ P ++   TCF +F IV  ++R  +G+  VP NL +  ++L +T ++M
Sbjct: 6   ISLIAVLSFFTLLPFIIAGGTCFIKFSIVLVMMRNALGIQQVPSNLTLNGISLILTAFIM 65

Query: 100 SPTLDRSIEMGI--QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
            P   R I+         N     +  +    + +  ++ + +    +  F  +   ++ 
Sbjct: 66  MPVCQRIIDDVETRHIDFNQSSAFSQFVNDGLDGYREYLVHYSDHDLIHFFNKVQQRNND 125

Query: 158 NTDITKNDH----IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
           +      +H    +    L+P++ +SE++ +F I F I +PF++IDM+V++I++A+GMMM
Sbjct: 126 DNVANTFEHELTRLPLMTLMPAYALSEIQSAFRIAFYIYIPFVVIDMVVSSILLALGMMM 185

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           + P +IS+P K+I FV +DGWSLL + L+  +
Sbjct: 186 MSPVTISIPIKLILFVAMDGWSLLTKGLIAQY 217


>gi|126174198|ref|YP_001050347.1| type III secretion system protein [Shewanella baltica OS155]
 gi|304408581|ref|ZP_07390202.1| Yop virulence translocation R [Shewanella baltica OS183]
 gi|307305409|ref|ZP_07585157.1| Yop virulence translocation R [Shewanella baltica BA175]
 gi|125997403|gb|ABN61478.1| Yop virulence translocation R [Shewanella baltica OS155]
 gi|304352402|gb|EFM16799.1| Yop virulence translocation R [Shewanella baltica OS183]
 gi|306911712|gb|EFN42137.1| Yop virulence translocation R [Shewanella baltica BA175]
          Length = 216

 Score =  158 bits (401), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 67/208 (32%), Positives = 111/208 (53%), Gaps = 2/208 (0%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           V+   +   LS+ P+  +M T F +  IVFS+LR  +G+  +PPN+ I  LAL +T + M
Sbjct: 8   VQLIIMLFCLSLLPLFAVMGTSFLKLAIVFSMLRNALGIQQIPPNMAIYGLALILTLFTM 67

Query: 100 SPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
           +P      +       + +              P+  F+  NT    +  F ++ H    
Sbjct: 68  APVGMAINDNLKATPIVFDAPNVFEQINTEAIAPYRAFLDKNTSNTQIEFFANIGHKVWP 127

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
                        +++P+F +S+L  +F+IG LI LPF+ ID+IV+ I++AMGMMM+ P 
Sbjct: 128 EKYQQVLTKDSLLVMVPAFTMSQLIEAFKIGLLIYLPFVAIDLIVSNILLAMGMMMVSPM 187

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +I+LPFK++ F+L+ GW  L+  L+ SF
Sbjct: 188 TIALPFKLLIFILMGGWEKLISQLMMSF 215


>gi|171319016|ref|ZP_02908143.1| Yop virulence translocation R [Burkholderia ambifaria MEX-5]
 gi|171095771|gb|EDT40724.1| Yop virulence translocation R [Burkholderia ambifaria MEX-5]
          Length = 213

 Score =  158 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 63/204 (30%), Positives = 108/204 (52%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
              +   L I P   ++VT + +  IVF++++  +G+   P  LV  +LAL +T +VM+P
Sbjct: 9   LLVLSMALGIVPAACVLVTSYTKISIVFALVKNAIGIQQTPSALVTNALALIVTMFVMAP 68

Query: 102 TLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
            L              Q         V +P   FM+ +   ++ +  +  A         
Sbjct: 69  VLTEVSRNMASGPSREQSRIEWVSNAVGKPVGEFMKKHVDPREQARLIASAERIWPEAMA 128

Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
                 ++ IL P+F ISE+  +F+IGF++ L F+ ID+IVA I+MAMGM+M  PT +S+
Sbjct: 129 KAAKPDDFFILAPAFAISEITAAFKIGFVLYLAFVAIDLIVANILMAMGMIMFSPTIVSI 188

Query: 222 PFKVIFFVLIDGWSLLVENLVKSF 245
           P K++ F + DGWS L+++L+ ++
Sbjct: 189 PLKIVLFAMADGWSRLIQSLILTY 212


>gi|261344591|ref|ZP_05972235.1| type III secretion apparatus protein, YscR/HrcR family [Providencia
           rustigianii DSM 4541]
 gi|282567505|gb|EFB73040.1| type III secretion apparatus protein, YscR/HrcR family [Providencia
           rustigianii DSM 4541]
          Length = 221

 Score =  158 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 55/208 (26%), Positives = 109/208 (52%), Gaps = 2/208 (0%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +    +    ++ P ++   TC+ +  IV  ++R  MG+  VP  + +  +AL ++ +VM
Sbjct: 8   IPLLVLIAFSTLLPFIIAAGTCYLKISIVLIMVRNAMGVQQVPSTMALNGIALLLSIFVM 67

Query: 100 SPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
            P L          +   +N  +    +      +  ++   +  + ++ F  +      
Sbjct: 68  MPILQDVNNHMRSERVDFSNVESIDNFVDNGLGRYKDYLVKYSDPQLVTFFESVQQGKSE 127

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
                +        L+P++ +SE++ +FEIGF I LPF++ID+++++I++A+GMMM+ P 
Sbjct: 128 AEVSEEQAEPTLFSLLPAYALSEIKSAFEIGFYIYLPFVVIDLVISSILLALGMMMMSPV 187

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +IS+P K+I FV IDGWSL+ + LV  +
Sbjct: 188 TISVPVKLILFVAIDGWSLISKGLVMQY 215


>gi|170018891|ref|YP_001723845.1| surface presentation of antigens protein SpaP [Escherichia coli
           ATCC 8739]
 gi|169753819|gb|ACA76518.1| Yop virulence translocation R [Escherichia coli ATCC 8739]
          Length = 221

 Score =  158 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 58/213 (27%), Positives = 120/213 (56%), Gaps = 4/213 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  +    I ++ ++ P ++   T F +F IVF I+R  +G+  VP N+ +  +AL ++ 
Sbjct: 2   SNSISLIAILSLFTLLPFIIASGTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61

Query: 97  YVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-- 152
           +VM P             +  NN  +    ++     +  ++   +  + ++ F  +   
Sbjct: 62  FVMMPVGKEIYYNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVNFFEKIQKV 121

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
           +SS  N +I  +D+I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM
Sbjct: 122 NSSEDNEEIFDDDNIPIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+ P +IS P K+I FV +DGW++L + L+  +
Sbjct: 182 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214


>gi|326315333|ref|YP_004233005.1| Yop virulence translocation R [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|89111159|dbj|BAE80249.1| HrcR [Acidovorax avenae subsp. avenae]
 gi|89111192|dbj|BAE80281.1| HrcR [Acidovorax avenae subsp. avenae]
 gi|323372169|gb|ADX44438.1| Yop virulence translocation R [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 220

 Score =  158 bits (400), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 55/197 (27%), Positives = 111/197 (56%), Gaps = 4/197 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGI- 111
           P   ++VT + + ++V  +LR  +G+  VPPN+V+  +A+ ++ YVM+P    + +    
Sbjct: 23  PFAAMIVTSYTKVVVVLGLLRNALGVQQVPPNMVLNGIAIIISVYVMAPVAMEASDRMQM 82

Query: 112 ---QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIE 168
                  +N      A     EPF  F+  +    + + F+  A +             +
Sbjct: 83  LPPSAQSSNTQQMLAAASAAREPFRKFLDKHADAAEKAFFLKSAQALWPEDRARSLQADD 142

Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
             +L P+F+++EL  +F IGFL+ L F+I+++++A +++AMG+  + PT++++PFK++ F
Sbjct: 143 LVVLAPAFLLTELTAAFRIGFLLYLAFIIVELVIANVLLAMGLSQVSPTNVAIPFKLLLF 202

Query: 229 VLIDGWSLLVENLVKSF 245
           V++DGWS ++  LV ++
Sbjct: 203 VVLDGWSQVMHGLVMTY 219


>gi|312172195|emb|CBX80452.1| Surface presentation of antigens protein SpaP [Erwinia amylovora
           ATCC BAA-2158]
          Length = 229

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 58/212 (27%), Positives = 117/212 (55%), Gaps = 6/212 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +    + +  ++ P ++   TCF +F IV  ++R  +G+  VP NL +  ++L +T ++M
Sbjct: 12  ISLIAVLSFFTLLPFIIAGGTCFIKFSIVLVMMRNALGIQQVPSNLTLNGISLILTAFIM 71

Query: 100 SPTLDRSIEMGI--QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
            P   R I+         N     +  +    + +  ++ + +    +  F  +   ++ 
Sbjct: 72  MPVCQRIIDDVETRHIDFNQSSAFSQFVNDGLDGYREYLVHYSDHDLIHFFNKVQQRNND 131

Query: 158 NTDITKNDH----IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
           +T     +H    +    L+P++ +SE++ +F+I F I +PF++IDM+V++I++A+GMMM
Sbjct: 132 DTVANTFEHELTRLPLMTLMPAYALSEIQSAFKIAFYIYIPFVVIDMVVSSILLALGMMM 191

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           + P +IS+P K+I FV +DGWSLL + L+  +
Sbjct: 192 MSPVTISIPIKLILFVAMDGWSLLTKGLIAQY 223


>gi|94986979|ref|YP_594912.1| type III secretion system protein [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731228|emb|CAJ54591.1| translocation protein in type III secretion [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 216

 Score =  158 bits (399), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 66/209 (31%), Positives = 117/209 (55%), Gaps = 3/209 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +        L +AP +++MVT + + ++V S++R  +G+  VPP +V+  LA+ ++ ++M
Sbjct: 7   LIIILGLGALGLAPFVIMMVTSYVKIVVVTSLIRNALGVQQVPPAIVMNGLAIILSIFIM 66

Query: 100 SPTLDRSIEMGIQ---PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           +P   +  ++ ++   P     +    A+     P   F+  N  E  +   M  A    
Sbjct: 67  APVYMKMEDLYLKTALPSSPAALEVIKALYDATPPLREFLIRNADESTIRGLMVTAKRIW 126

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
                         I+IP+F I+EL +SF+IGFL+ LPF+ ID++V+ I++AMGMMM+ P
Sbjct: 127 PKDQHETISRNNLLIIIPAFTITELTKSFQIGFLLYLPFVAIDLVVSNILLAMGMMMVSP 186

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            +ISLPFK++ FV +DGW  + + L+ S+
Sbjct: 187 MTISLPFKLLLFVTLDGWLKISQGLMLSY 215


>gi|212711701|ref|ZP_03319829.1| hypothetical protein PROVALCAL_02776 [Providencia alcalifaciens DSM
           30120]
 gi|212685803|gb|EEB45331.1| hypothetical protein PROVALCAL_02776 [Providencia alcalifaciens DSM
           30120]
          Length = 221

 Score =  158 bits (399), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 56/208 (26%), Positives = 111/208 (53%), Gaps = 2/208 (0%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +    I  + ++ P ++   TC+ +  IV  ++R  MG+  VP  + +  +AL ++ +VM
Sbjct: 8   IPLLAIIALSTLLPFIIAAGTCYLKISIVLIMVRNAMGVQQVPSTMALNGIALLLSIFVM 67

Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
            P L    +      ++  N  +    +      +  ++   +  + ++ F  +      
Sbjct: 68  MPVLQDVNQYMRHESVDFSNVESVDNFVDNGLGRYKSYLMKYSDPQLVTFFESVQQGKTE 127

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
                +        L+P++ +SE++ +FEIGF I LPF++ID+++++I++A+GMMM+ P 
Sbjct: 128 IEVQEEQAEPTLFSLLPAYALSEIKSAFEIGFYIYLPFVVIDLVISSILLALGMMMMSPV 187

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +IS+P K+I FV IDGWSL+ + LV  +
Sbjct: 188 TISVPVKLILFVAIDGWSLISKGLVMQY 215


>gi|292488067|ref|YP_003530944.1| surface presentation of antigens protein SpaP [Erwinia amylovora
           CFBP1430]
 gi|291553491|emb|CBA20536.1| Surface presentation of antigens protein SpaP [Erwinia amylovora
           CFBP1430]
          Length = 229

 Score =  158 bits (399), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 57/212 (26%), Positives = 115/212 (54%), Gaps = 6/212 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +    + +  ++ P ++   TCF +F IV  ++R  +G+  VP NL +  ++L +T ++M
Sbjct: 12  ISLIAVLSFFTLLPFIIAGGTCFIKFSIVLVMMRNALGIQQVPSNLTLNGISLILTAFIM 71

Query: 100 SPTLDRSIEMGI--QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
            P   R I+         N     +  +    + +  ++ + +    +  F  +   ++ 
Sbjct: 72  MPVCQRIIDDVETRHIDFNQSSAFSQFVNDGLDGYREYLVHYSDHDLIHFFNKVQQRNND 131

Query: 158 NTDITKNDH----IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
           +      +H    +    L+P++ +SE++ +F I F I +PF++IDM+V++I++A+GMMM
Sbjct: 132 DNVANTFEHELTRLPLMTLMPAYALSEIQSAFRIAFYIYIPFVVIDMVVSSILLALGMMM 191

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           + P +IS+P K+I FV +DGWSLL + L+  +
Sbjct: 192 MSPVTISIPIKLILFVAMDGWSLLTKGLIAQY 223


>gi|315281327|ref|ZP_07869975.1| flagellar biosynthetic protein FliP [Listeria marthii FSL S4-120]
 gi|313615025|gb|EFR88521.1| flagellar biosynthetic protein FliP [Listeria marthii FSL S4-120]
          Length = 219

 Score =  158 bits (399), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 60/214 (28%), Positives = 117/214 (54%), Gaps = 4/214 (1%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
                    V  F + T+LS++  +++M T F   IIV  + R G+G  ++PPN V++ L
Sbjct: 7   NGTDGVNSSVALFVLVTVLSLSASIVLMFTHFTYCIIVLGLTRQGLGATNLPPNQVLVGL 66

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           ALF++ ++M P +    +   +P    + + +            ++  NT + D+++ + 
Sbjct: 67  ALFLSLFMMQPLITAWYDDVYKPSQKEEWSASKVWDETQPLLTKYVAENTYKHDINMML- 125

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
               +     +TK +      L+P+F+++++ + F  G  I L F+ ID+IV+T++M +G
Sbjct: 126 ---KAEGEDPVTKKEDAPLMALMPAFILTQITQGFLTGMFIYLAFIFIDLIVSTLLMYLG 182

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           MMM+PP +ISLPFK++ F+ I G+ L+   + ++
Sbjct: 183 MMMVPPMTISLPFKILVFIFIGGYGLITNMIFQT 216


>gi|71735866|ref|YP_274731.1| type III secretion system protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71556419|gb|AAZ35630.1| type III secretion component, putative [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 218

 Score =  157 bits (398), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 59/214 (27%), Positives = 107/214 (50%), Gaps = 2/214 (0%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
                ++    +   + + P+ ++ +T F +  +V  ++R  +G+   PPNLV+  +AL 
Sbjct: 3   GYQPNLIEIILVVATIGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIALI 62

Query: 94  MTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           ++ YV +P +        G    + N          +       +     E +   F+  
Sbjct: 63  LSVYVTTPLIGDMYREVQGRDLSLQNVQQLEELGSALCPTLQAHLSKFANESERGFFVQA 122

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
             +             +  +LIP+F+ SEL R+FEIGFL+ +PFL++D++V+ ++MAMGM
Sbjct: 123 TETIWSPEARADLRDDDLVVLIPAFVSSELTRAFEIGFLLYIPFLVVDLLVSNVLMAMGM 182

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            M+ PT IS+P K+  FV + GWS L+  L+ S+
Sbjct: 183 SMVSPTLISIPLKIFLFVALSGWSRLMHGLILSY 216


>gi|256024631|ref|ZP_05438496.1| surface presentation of antigens protein SpaP [Escherichia sp.
           4_1_40B]
 gi|300950614|ref|ZP_07164516.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 116-1]
 gi|300958195|ref|ZP_07170349.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 175-1]
 gi|301026123|ref|ZP_07189597.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 196-1]
 gi|301643799|ref|ZP_07243836.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 146-1]
 gi|307139550|ref|ZP_07498906.1| surface presentation of antigens protein SpaP [Escherichia coli
           H736]
 gi|62085079|gb|AAX62943.1| type III secretion apparatus protein [Escherichia coli]
 gi|299879818|gb|EFI88029.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 196-1]
 gi|300315147|gb|EFJ64931.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 175-1]
 gi|300450094|gb|EFK13714.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 116-1]
 gi|301077832|gb|EFK92638.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 146-1]
 gi|323941617|gb|EGB37797.1| YscR/HrcR family protein type III secretion lipoprotein
           [Escherichia coli E482]
          Length = 221

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 58/213 (27%), Positives = 120/213 (56%), Gaps = 4/213 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  +    I ++ ++ P ++   T F +F IVF I+R  +G+  VP N+ +  +AL ++ 
Sbjct: 2   SNSISLIAILSLFTLLPFIIASGTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61

Query: 97  YVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-- 152
           +VM P             +  NN  +    ++     +  ++   +  + ++ F  +   
Sbjct: 62  FVMMPVGKEIYYNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVNFFEKIQKV 121

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
           +SS  N +I  +D+I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM
Sbjct: 122 NSSEDNEEIFDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+ P +IS P K+I FV +DGW++L + L+  +
Sbjct: 182 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214


>gi|76152316|gb|ABA39817.1| HrcR [Erwinia pyrifoliae]
          Length = 217

 Score =  157 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 66/205 (32%), Positives = 117/205 (57%), Gaps = 2/205 (0%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
                LS+ P+L+I+ TCF +  +V  I R  +G+  VPPN+ +  +AL  T +VM+P  
Sbjct: 13  LFLGALSLIPMLMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVF 72

Query: 104 DRSIEMGIQ--PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
           ++  +   Q    +++     T++     P   FM +NT    L    + +         
Sbjct: 73  NQMQQQFSQVPADLSSMDNLKTSVSNGVAPLQKFMTHNTDPDILIHLQENSVRMWPKEMS 132

Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
                    ++IP+F++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SL
Sbjct: 133 DSVSKRHVLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSL 192

Query: 222 PFKVIFFVLIDGWSLLVENLVKSFI 246
           P K++ FVLI+GW+ L++ L  S++
Sbjct: 193 PLKMLLFVLINGWTRLLDGLFYSYL 217


>gi|330812430|ref|YP_004356892.1| type III secretion protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|312597801|gb|ADQ89916.1| RscR [Pseudomonas fluorescens]
 gi|327380538|gb|AEA71888.1| putative type III secretion protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 217

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 66/208 (31%), Positives = 118/208 (56%), Gaps = 4/208 (1%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
                  +S+ P+LLI+ + F +  IV +I R  +G+  VPPN+ + ++AL  T ++M+P
Sbjct: 11  LALFIGGISLVPLLLIICSAFLKIAIVLTITRNAIGVQQVPPNMALYAIALAATLFIMAP 70

Query: 102 TLDRSIEMGIQ---PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
                 E   +      N +  + +A+    +P   FM  NT    L+  ++        
Sbjct: 71  VGHNIAEQVKERPLDFSNTEALQGSALNA-IKPLQAFMSRNTNPDILAHLLENTQRMWPK 129

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
               +    +  +LIP+FM+SEL   F++GFLI +PF++ID+IV+ +++A+GM M+ P +
Sbjct: 130 ERAEQASRDDLMLLIPAFMLSELEAGFQMGFLIYIPFIVIDLIVSNLLLALGMQMVAPMT 189

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           ISLP K++ FVL+ GW+ L+++L  S++
Sbjct: 190 ISLPLKLLIFVLVQGWTQLLDSLFYSYL 217


>gi|256019339|ref|ZP_05433204.1| surface presentation of antigens protein SpaP [Shigella sp. D9]
 gi|332280453|ref|ZP_08392866.1| type III secretion protein EpaP [Shigella sp. D9]
 gi|332102805|gb|EGJ06151.1| type III secretion protein EpaP [Shigella sp. D9]
          Length = 220

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 60/213 (28%), Positives = 120/213 (56%), Gaps = 5/213 (2%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  +    I ++ ++ P ++   TCF +F IVF I+R  +G+  VP N+ +  +AL ++ 
Sbjct: 2   SNSISLIAILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61

Query: 97  YVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-- 152
           +VM P             +  NN  +    ++     +  ++   +  + +S F  +   
Sbjct: 62  FVMMPVGKEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQKV 121

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
           +SS  N +I  +D+I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM
Sbjct: 122 NSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M  P +IS P K+I FV +DGW++L + L+  +
Sbjct: 182 M-SPVTISTPIKLILFVAMDGWTMLSKGLILQY 213


>gi|320193801|gb|EFW68434.1| type III secretion system protein [Escherichia coli WV_060327]
          Length = 217

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 70/212 (33%), Positives = 126/212 (59%), Gaps = 4/212 (1%)

Query: 33  LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
           ++I +  +    +F +LS+ PI +++ T F +  IV  IL+  +G+  VPPN+ + S++L
Sbjct: 5   MTIGSQPIFLIIVFFLLSLLPIFVVVGTSFLKISIVLGILKNALGIQQVPPNMALTSVSL 64

Query: 93  FMTFYVMSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
            +T ++MSP + +  +   Q  +N  +        +++  P+  F+  NT + ++  F  
Sbjct: 65  ILTMFIMSPIILQINDNISQEQINYTDSDFFQKVDEKILSPYRGFLEKNTEKDNVEFFER 124

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
            A     N  I K D     IL+P+F + +L  +F+IGFL+ LPF+ ID+I++ I++A+G
Sbjct: 125 AAQKKLGNETILKKD--SLFILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALG 182

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
           MMM+ P +IS+PFK++ F+L+ GW  L E L+
Sbjct: 183 MMMVSPVTISIPFKILLFILVGGWQKLFEFLL 214


>gi|238918894|ref|YP_002932408.1| type III secretion system protein [Edwardsiella ictaluri 93-146]
 gi|238868462|gb|ACR68173.1| type III secretion apparatus protein, YscR/HrcR family, putative
           [Edwardsiella ictaluri 93-146]
          Length = 215

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 69/214 (32%), Positives = 121/214 (56%), Gaps = 1/214 (0%)

Query: 33  LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
           +S++        +   LS+ P+L++M T F +  +VF++LR  +G+  +PPNL +  LAL
Sbjct: 1   MSLTEQPAELIALLVTLSLLPLLIVMGTSFLKLSVVFALLRNALGIQQIPPNLALYGLAL 60

Query: 93  FMTFYVMSPTLDRS-IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
            +T ++M+P        +   P        +       +P+  F+R +T  K L  F  +
Sbjct: 61  ILTLFIMTPVGTAVQARLADAPAQAQTTLLSRLSDNTLDPYRQFLRQHTSAKQLKFFRQV 120

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           A  S   +   K       +L+P+F +S+L  +F+IG L+ LPF+ ID+IV+ I++AMGM
Sbjct: 121 ATKSWPASVREKISDNSLLLLMPAFAVSQLVEAFQIGLLLFLPFIAIDLIVSNILLAMGM 180

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MM+ P +IS+PFK++ F+L+ GW  ++  L+ S+
Sbjct: 181 MMVSPMTISMPFKLLVFILVGGWDKILGQLLLSY 214


>gi|238899257|ref|YP_002924940.1| type III secretion system protein [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229467018|gb|ACQ68792.1| type III secretion system protein [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 216

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 120/207 (57%), Gaps = 2/207 (0%)

Query: 41  RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100
               +  +LSI P+L++M TCF +  +VFS+LR  +G+   PPN+ I  LAL +T ++M+
Sbjct: 9   ELITLLFLLSIFPLLVVMGTCFLKLSVVFSLLRNALGVQQTPPNIAIYGLALVLTIFIMA 68

Query: 101 PTLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
           P      E      ++            +  +P+  F+ +NT  + ++ F DM  ++   
Sbjct: 69  PVGLEVNESLKGEKLSQDFGTFVEQINSKALDPYRQFLLHNTSSEQINFFSDMIKNNWPK 128

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
               K       IL+P+F +S+L  +F+IG L+ LPF+ ID+IV+ I++AMGMMM+ P +
Sbjct: 129 KYRDKVASDSLLILMPAFTVSQLIEAFKIGLLLYLPFVAIDLIVSNILLAMGMMMMSPMT 188

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ISLPFK++ F+L+ GW +++  L  S+
Sbjct: 189 ISLPFKILIFLLVGGWDMILGQLAGSY 215


>gi|126442614|ref|YP_001061222.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei 668]
 gi|134280834|ref|ZP_01767544.1| FliP family [Burkholderia pseudomallei 305]
 gi|167725906|ref|ZP_02409142.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei
           DM98]
 gi|167905065|ref|ZP_02492270.1| flagellar biosynthesis protein FliP [Burkholderia pseudomallei NCTC
           13177]
 gi|254182913|ref|ZP_04889506.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
           1655]
 gi|254299708|ref|ZP_04967157.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
           406e]
 gi|125657197|gb|ABN48685.1| FliP [Burkholderia pseudomallei]
 gi|126222105|gb|ABN85610.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei 668]
 gi|134247856|gb|EBA47940.1| FliP family [Burkholderia pseudomallei 305]
 gi|157809347|gb|EDO86517.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
           406e]
 gi|184213447|gb|EDU10490.1| flagellar biosynthetic protein FliP [Burkholderia pseudomallei
           1655]
          Length = 255

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 83/231 (35%), Positives = 124/231 (53%), Gaps = 7/231 (3%)

Query: 14  PELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILR 73
           P L        + + +  D S+ T   +     T+L + P L I++T F RF IV ++LR
Sbjct: 28  PALAEPLKLPLESLGLRGDYSVKT---QILLFMTLLGLLPALAIVMTSFLRFAIVLALLR 84

Query: 74  TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFW 133
             +G+    P  VI  +AL +T  VM P         I+P   ++IT   AI R  +P  
Sbjct: 85  QALGLQQGLPARVITGVALLLTLLVMRPVGLDVWRHAIEPYDRDEITFREAIARAEQPVS 144

Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
            FM   T +  L     ++       D+ K +   + +   +FM+SEL+ +F+IG ++ L
Sbjct: 145 RFMLAQTSKASLEQISRLSG----ERDVAKPEDHAFVVKAAAFMMSELKTAFQIGAMLFL 200

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           PFLIID++VA+ +MAMGMMML P  ISLP K++ FVL+DGW+L V  L  S
Sbjct: 201 PFLIIDLVVASTLMAMGMMMLSPLVISLPLKLLLFVLVDGWTLTVNTLTTS 251


>gi|213162230|ref|ZP_03347940.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 190

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/190 (36%), Positives = 110/190 (57%), Gaps = 3/190 (1%)

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM-- 115
           M T F +  +VFSILR  +G+  VPPN+ +   AL ++ ++M PTL    E    P+   
Sbjct: 1   MGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIMGPTLLAVKER-WHPVQVA 59

Query: 116 NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPS 175
                 +    +   P+  F++ N+ EK+ + F ++   +       K       ILIP+
Sbjct: 60  GAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIPA 119

Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235
           F +S+L ++F IG LI LPFL ID++++ I++AMGMMM+ P +ISLPFK++ F+L  GW 
Sbjct: 120 FTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWD 179

Query: 236 LLVENLVKSF 245
           L +  LV+SF
Sbjct: 180 LTLAQLVQSF 189


>gi|56414842|ref|YP_151917.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363770|ref|YP_002143407.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|56129099|gb|AAV78605.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095247|emb|CAR60798.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
          Length = 224

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 51/216 (23%), Positives = 115/216 (53%), Gaps = 9/216 (4%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +    +    ++ P ++   TCF +F IVF ++R  +G+  +P N+ +  +AL ++ +VM
Sbjct: 5   ISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSMFVM 64

Query: 100 SPTLDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
            P +  +           N+  + +  +    + +  ++   +  + +  F +       
Sbjct: 65  WPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLSKYSDRELVQFFENAQLKRQY 124

Query: 158 NT-------DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
                    D  + +      L+P++ +SE++ +F+IGF + LPF+++D++V+++++A+G
Sbjct: 125 GEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALG 184

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           MMM+ P +IS P K++ FV +DGW+LL + L+  ++
Sbjct: 185 MMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQYM 220


>gi|300906599|ref|ZP_07124290.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 84-1]
 gi|301303009|ref|ZP_07209136.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 124-1]
 gi|71388159|gb|AAZ31293.1| EpaP [Escherichia coli]
 gi|300401638|gb|EFJ85176.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 84-1]
 gi|300841673|gb|EFK69433.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 124-1]
 gi|315256734|gb|EFU36702.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli MS 85-1]
          Length = 221

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 60/213 (28%), Positives = 119/213 (55%), Gaps = 4/213 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  +    I T+ ++ P ++   T F +F IVF I+R  +G+  VP N+ +  +AL ++ 
Sbjct: 2   SNSISLIAILTLFTLLPFIIASGTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61

Query: 97  YVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-- 152
           +VM P             +  NN  +    ++     +  ++   +  + +S F  +   
Sbjct: 62  FVMMPVGTEIYYNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQKV 121

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
           +SS  N +I  +D+I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM
Sbjct: 122 NSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+ P  IS P K+I FV +DGW++L + L+  +
Sbjct: 182 MMSPVIISTPIKLILFVAMDGWTMLSKGLILQY 214


>gi|161502066|ref|YP_001569178.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|973278|gb|AAC43945.1| SpaP [Salmonella enterica]
 gi|973282|gb|AAC43948.1| SpaP [Salmonella enterica]
 gi|160863413|gb|ABX20036.1| hypothetical protein SARI_00083 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 224

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 51/216 (23%), Positives = 115/216 (53%), Gaps = 9/216 (4%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +    +    ++ P ++   TCF +F IVF ++R  +G+  +P N+ +  +AL ++ +VM
Sbjct: 5   ISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGIALLLSMFVM 64

Query: 100 SPTLDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
            P +  +           N+  + +  +    + +  ++   +  + +  F +       
Sbjct: 65  WPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQFFENAQLKRQY 124

Query: 158 NT-------DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
                    D  + +      L+P++ +SE++ +F+IGF + LPF+++D++V+++++A+G
Sbjct: 125 GEETEAVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALG 184

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           MMM+ P +IS P K++ FV +DGW+LL + L+  ++
Sbjct: 185 MMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQYM 220


>gi|218696459|ref|YP_002404126.1| surface presentation of antigens protein SpaP [Escherichia coli
           55989]
 gi|218353191|emb|CAU99085.1| putative type III secretion system protein EpaP [Escherichia coli
           55989]
          Length = 221

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 60/213 (28%), Positives = 119/213 (55%), Gaps = 4/213 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  +    I T+ ++ P ++   T F +F IVF I+R  +G+  VP N+ +  +AL ++ 
Sbjct: 2   SNTISLIAILTLFTLLPFIIASGTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61

Query: 97  YVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-- 152
           +VM P             +  NN  +    ++     +  ++   +  + +S F  +   
Sbjct: 62  FVMMPVGTEIYYNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQKV 121

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
           +SS  N +I  +D+I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM
Sbjct: 122 NSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+ P  IS P K+I FV +DGW++L + L+  +
Sbjct: 182 MMSPVIISTPIKLILFVAMDGWTMLSKGLILQY 214


>gi|74317113|ref|YP_314853.1| flagellar biosynthesis protein FliP [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056608|gb|AAZ97048.1| flagellar transport protein FliP [Thiobacillus denitrificans ATCC
           25259]
          Length = 241

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 85/245 (34%), Positives = 131/245 (53%), Gaps = 4/245 (1%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           M R     L L TP L    +     +   A   +      +     +    P LL+  T
Sbjct: 1   MSRLLLLTLALSTPALGAEPTVPLLAVTPAAGGEVIGVPAASLPWLLLFPFLPALLLAFT 60

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R  +V  +LR G+G  + PPNLV+  LA+ +T +VMSP L        +P +   + 
Sbjct: 61  AFTRIAVVLFLLRQGIGSPTAPPNLVLTGLAVLLTLFVMSPALKTINADAYEPYLAGTLA 120

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              A    A P   FM + TR +DL+LF++         D  + + +    L P+F+ SE
Sbjct: 121 LDEAAAEAAAPLKRFMLHQTRAEDLALFVE----DDPTVDPRRAETVPLAALAPAFLTSE 176

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +F+IGF+++LPFL+ID++VA ++ A+GM+MLPP  +SLP K++ FV +DGW LLV +
Sbjct: 177 LKTAFQIGFMVVLPFLVIDLVVAAVLTALGMIMLPPQLVSLPLKLLLFVAVDGWHLLVGS 236

Query: 241 LVKSF 245
           L+ SF
Sbjct: 237 LIGSF 241


>gi|194426341|ref|ZP_03058896.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli B171]
 gi|260845712|ref|YP_003223490.1| T3SS structure protein EscR [Escherichia coli O103:H2 str. 12009]
 gi|260858247|ref|YP_003232138.1| T3SS structure protein EscR [Escherichia coli O26:H11 str. 11368]
 gi|13447701|gb|AAK26700.1|AF200363_8 EscR [Escherichia coli]
 gi|18034505|gb|AAL57527.1|AF453441_11 EscR [Escherichia coli]
 gi|17384635|emb|CAC81847.1| EscR protein [Escherichia coli]
 gi|57434472|emb|CAI43889.1| EscR protein [Escherichia coli]
 gi|189473194|gb|ACD99645.1| putative EscR [Escherichia coli]
 gi|194415649|gb|EDX31916.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli B171]
 gi|195183213|dbj|BAG66758.1| T3SS structure protein EscR [Escherichia coli O111:H-]
 gi|254692325|emb|CAR47966.1| EscR protein [Escherichia coli]
 gi|254692393|emb|CAR48036.1| EscR protein [Escherichia coli]
 gi|257756896|dbj|BAI28398.1| T3SS structure protein EscR [Escherichia coli O26:H11 str. 11368]
 gi|257760859|dbj|BAI32356.1| T3SS structure protein EscR [Escherichia coli O103:H2 str. 12009]
          Length = 217

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/212 (33%), Positives = 127/212 (59%), Gaps = 4/212 (1%)

Query: 33  LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
           ++I +  +    +F +LS+ PI +++ T F +  IV  IL+  +G+  VPPN+ + S++L
Sbjct: 5   MTIGSQPIFLIIVFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSL 64

Query: 93  FMTFYVMSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
            +T ++MSP + +  +   Q  +N  +        +++  P+  F+  NT ++++  F  
Sbjct: 65  ILTMFIMSPIILQINDNISQEPINYTDSDFFQKVDEKILSPYRGFLEKNTEKENVEFFER 124

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
            A     N  I K D     IL+P+F + +L  +F+IGFL+ LPF+ ID+I++ I++A+G
Sbjct: 125 AAQKKLGNETILKKD--SLFILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALG 182

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
           MMM+ P +IS+PFK++ F+L+ GW  L E L+
Sbjct: 183 MMMVSPVTISIPFKILLFILVGGWQKLFEFLL 214


>gi|167550261|ref|ZP_02344018.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|168463975|ref|ZP_02697892.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|238909657|ref|ZP_04653494.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|195633254|gb|EDX51668.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|205324695|gb|EDZ12534.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
          Length = 224

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 51/216 (23%), Positives = 115/216 (53%), Gaps = 9/216 (4%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +    +    ++ P ++   TCF +F IVF ++R  +G+  +P N+ +  +AL ++ +VM
Sbjct: 5   ISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSMFVM 64

Query: 100 SPTLDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
            P +  +           N+  + +  +    + +  ++   +  + +  F +       
Sbjct: 65  WPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQFFENAQLKRQY 124

Query: 158 NTDIT-------KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
             D         + +      L+P++ +SE++ +F+IGF + LPF+++D++V+++++A+G
Sbjct: 125 GEDTETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALG 184

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           MMM+ P +IS P K++ FV +DGW+LL + L+  ++
Sbjct: 185 MMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQYM 220


>gi|15804244|ref|NP_290283.1| type III secretion system protein [Escherichia coli O157:H7 EDL933]
 gi|168748640|ref|ZP_02773662.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC4113]
 gi|168753533|ref|ZP_02778540.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC4401]
 gi|168759830|ref|ZP_02784837.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC4501]
 gi|168766130|ref|ZP_02791137.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC4486]
 gi|168772321|ref|ZP_02797328.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC4196]
 gi|168779865|ref|ZP_02804872.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC4076]
 gi|168785598|ref|ZP_02810605.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC869]
 gi|168798679|ref|ZP_02823686.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC508]
 gi|193069204|ref|ZP_03050161.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli E110019]
 gi|195936266|ref|ZP_03081648.1| type III secretion system protein [Escherichia coli O157:H7 str.
           EC4024]
 gi|208806674|ref|ZP_03249011.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC4206]
 gi|208812050|ref|ZP_03253379.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC4045]
 gi|208819434|ref|ZP_03259754.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC4042]
 gi|209398112|ref|YP_002273179.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC4115]
 gi|215488994|ref|YP_002331425.1| type III secretion system protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217324318|ref|ZP_03440402.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. TW14588]
 gi|254795658|ref|YP_003080495.1| type III secretion system protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|260869701|ref|YP_003236103.1| T3SS structure protein EscR [Escherichia coli O111:H- str. 11128]
 gi|261225802|ref|ZP_05940083.1| LEE-encoded type III secretion system factor [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261258847|ref|ZP_05951380.1| T3SS structure protein EscR [Escherichia coli O157:H7 str. FRIK966]
 gi|291285071|ref|YP_003501889.1| Type III secretion system EscR protein [Escherichia coli O55:H7
           str. CB9615]
 gi|312967934|ref|ZP_07782146.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|12518477|gb|AAG58847.1|AE005597_5 escR [Escherichia coli O157:H7 str. EDL933]
 gi|3414917|gb|AAC31528.1| L0049 [Escherichia coli]
 gi|54311600|emb|CAG17515.1| EscR protein [Escherichia coli]
 gi|187771664|gb|EDU35508.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC4196]
 gi|188016994|gb|EDU55116.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC4113]
 gi|189002477|gb|EDU71463.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC4076]
 gi|189358993|gb|EDU77412.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC4401]
 gi|189364379|gb|EDU82798.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC4486]
 gi|189369636|gb|EDU88052.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC4501]
 gi|189374319|gb|EDU92735.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC869]
 gi|189378860|gb|EDU97276.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC508]
 gi|192957528|gb|EDV87974.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli E110019]
 gi|195957534|gb|ACG59645.1| type III secretion system protein EscR [Escherichia coli O157:H7]
 gi|195957593|gb|ACG59703.1| type III secretion system protein EscR [Escherichia coli]
 gi|195957650|gb|ACG59759.1| type III secretion system protein EscR [Escherichia coli]
 gi|208726475|gb|EDZ76076.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC4206]
 gi|208733327|gb|EDZ82014.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC4045]
 gi|208739557|gb|EDZ87239.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC4042]
 gi|209159512|gb|ACI36945.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. EC4115]
 gi|215267066|emb|CAS11511.1| T3SS structure protein EscR [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217320539|gb|EEC28963.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli O157:H7 str. TW14588]
 gi|221361440|emb|CAX18593.1| Type III secretion system, LEE associated [Escherichia coli]
 gi|221361497|emb|CAX18668.1| Type III secretion system, LEE associated [Escherichia coli]
 gi|221361558|emb|CAX18748.1| Type III secretion system, LEE associated [Escherichia coli]
 gi|254595058|gb|ACT74419.1| LEE-encoded type III secretion system factor [Escherichia coli
           O157:H7 str. TW14359]
 gi|255348331|gb|ACU09473.1| type III secretion system protein EscR [Escherichia coli]
 gi|257766057|dbj|BAI37552.1| T3SS structure protein EscR [Escherichia coli O111:H- str. 11128]
 gi|290764944|gb|ADD58905.1| Type III secretion system EscR protein [Escherichia coli O55:H7
           str. CB9615]
 gi|312287495|gb|EFR15403.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|320639373|gb|EFX08988.1| type III secretion system protein YscR [Escherichia coli O157:H7
           str. G5101]
 gi|320644817|gb|EFX13853.1| type III secretion system protein YscR [Escherichia coli O157:H-
           str. 493-89]
 gi|320650081|gb|EFX18577.1| type III secretion system protein YscR [Escherichia coli O157:H-
           str. H 2687]
 gi|320655428|gb|EFX23363.1| type III secretion system protein YscR [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320661054|gb|EFX28490.1| type III secretion system protein YscR [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320666180|gb|EFX33186.1| type III secretion system protein YscR [Escherichia coli O157:H7
           str. LSU-61]
          Length = 217

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/212 (33%), Positives = 126/212 (59%), Gaps = 4/212 (1%)

Query: 33  LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
           ++I +  +    +F +LS+ PI +++ T F +  IV  IL+  +G+  VPPN+ + S++L
Sbjct: 5   MTIGSQPIFLIIVFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSL 64

Query: 93  FMTFYVMSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
            +T ++MSP + +  +   Q  +N  +        +++  P+  F+  NT + ++  F  
Sbjct: 65  ILTMFIMSPIILQINDNISQEPINYTDSDFFQKVDEKILSPYRGFLEKNTEKDNVEFFER 124

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
            A     N  I K D     IL+P+F + +L  +F+IGFL+ LPF+ ID+I++ I++A+G
Sbjct: 125 AAQKKLGNETILKKD--SLFILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALG 182

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
           MMM+ P +IS+PFK++ F+L+ GW  L E L+
Sbjct: 183 MMMVSPVTISIPFKILLFILVGGWQKLFEFLL 214


>gi|16766196|ref|NP_461811.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|62181392|ref|YP_217809.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161615802|ref|YP_001589767.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167993125|ref|ZP_02574220.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168230960|ref|ZP_02656018.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|168235930|ref|ZP_02660988.1| type III secretion apparatus protein, YscR/HrcR family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168242627|ref|ZP_02667559.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168261987|ref|ZP_02683960.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168820413|ref|ZP_02832413.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194445004|ref|YP_002042131.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194448886|ref|YP_002046850.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194468694|ref|ZP_03074678.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194737581|ref|YP_002115842.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197248290|ref|YP_002147787.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197263760|ref|ZP_03163834.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|198245023|ref|YP_002216859.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200387886|ref|ZP_03214498.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204928065|ref|ZP_03219265.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205353833|ref|YP_002227634.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207858152|ref|YP_002244803.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|224584668|ref|YP_002638466.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|730796|sp|P40700|SPAP_SALTY RecName: Full=Surface presentation of antigens protein spaP
 gi|7448018|pir||T11207 spaP protein - Salmonella dublin
 gi|404291|emb|CAA51925.1| surface presentation of antigens [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|973258|gb|AAC43936.1| SpaP [Salmonella enterica subsp. enterica serovar Dublin]
 gi|973262|gb|AAC43966.1| SpaP [Salmonella enterica subsp. enterica serovar Senftenberg]
 gi|973266|gb|AAC43963.1| SpaP [Salmonella enterica subsp. enterica serovar Gallinarum]
 gi|973270|gb|AAC43939.1| SpaP [Salmonella enterica]
 gi|973274|gb|AAC43942.1| SpaP [Salmonella enterica]
 gi|973286|gb|AAC43951.1| SpaP [Salmonella enterica]
 gi|973290|gb|AAC43954.1| SpaP [Salmonella enterica]
 gi|973294|gb|AAC43957.1| SpaP [Salmonella enterica]
 gi|975763|gb|AAC43852.1| SpaP [Salmonella enterica]
 gi|975767|gb|AAC43858.1| SpaP [Salmonella enterica subsp. enterica serovar Typhisuis]
 gi|975775|gb|AAC43864.1| SpaP [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|975779|gb|AAC43855.1| SpaP [Salmonella enterica subsp. enterica serovar Enteritidis]
 gi|16421438|gb|AAL21770.1| surface presentation of antigens [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|62129025|gb|AAX66728.1| surface presentation of antigens; secretory proteins [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161365166|gb|ABX68934.1| hypothetical protein SPAB_03593 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403667|gb|ACF63889.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194407190|gb|ACF67409.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194455058|gb|EDX43897.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194713083|gb|ACF92304.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197211993|gb|ACH49390.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197242015|gb|EDY24635.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197290886|gb|EDY30240.1| type III secretion apparatus protein, YscR/HrcR family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197939539|gb|ACH76872.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|199604984|gb|EDZ03529.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204322387|gb|EDZ07584.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205273614|emb|CAR38601.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205328735|gb|EDZ15499.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205334464|gb|EDZ21228.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|205338099|gb|EDZ24863.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205342860|gb|EDZ29624.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205349049|gb|EDZ35680.1| type III secretion apparatus protein, YscR/HrcR family [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|206709955|emb|CAR34309.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|218988950|gb|ACL13613.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. salamae serovar Sofia]
 gi|224469195|gb|ACN47025.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|261248026|emb|CBG25859.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267995018|gb|ACY89903.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301159449|emb|CBW18967.1| type III secretion system secretory apparatus [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312913908|dbj|BAJ37882.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320087295|emb|CBY97060.1| Surface presentation of antigens protein spaP [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321223439|gb|EFX48505.1| Surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322614292|gb|EFY11223.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322621644|gb|EFY18497.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322624505|gb|EFY21338.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322628836|gb|EFY25619.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322633437|gb|EFY30179.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322635987|gb|EFY32695.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322639695|gb|EFY36380.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322646878|gb|EFY43381.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322650646|gb|EFY47051.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322654741|gb|EFY51060.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658962|gb|EFY55215.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322664471|gb|EFY60665.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322668280|gb|EFY64437.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673740|gb|EFY69841.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322677801|gb|EFY73864.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322681369|gb|EFY77401.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322683771|gb|EFY79781.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|322715876|gb|EFZ07447.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|323131242|gb|ADX18672.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323193840|gb|EFZ79043.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323200310|gb|EFZ85392.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323203187|gb|EFZ88216.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323205566|gb|EFZ90531.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323210077|gb|EFZ94980.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323216380|gb|EGA01107.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323221127|gb|EGA05558.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323226949|gb|EGA11131.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323230767|gb|EGA14885.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323234882|gb|EGA18968.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323238921|gb|EGA22971.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323241621|gb|EGA25652.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323248232|gb|EGA32168.1| type III secretion system protein SpaP [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323251184|gb|EGA35057.1| type III secretion system protein SpaP [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256068|gb|EGA39806.1| type III secretion system protein SpaP [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323263203|gb|EGA46741.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323264294|gb|EGA47800.1| type III secretion system protein SpaP [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271120|gb|EGA54548.1| type III secretion system protein SpaP [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326624621|gb|EGE30966.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326628942|gb|EGE35285.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332989762|gb|AEF08745.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 224

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 51/216 (23%), Positives = 115/216 (53%), Gaps = 9/216 (4%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +    +    ++ P ++   TCF +F IVF ++R  +G+  +P N+ +  +AL ++ +VM
Sbjct: 5   ISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSMFVM 64

Query: 100 SPTLDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
            P +  +           N+  + +  +    + +  ++   +  + +  F +       
Sbjct: 65  WPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQFFENAQLKRQY 124

Query: 158 NT-------DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
                    D  + +      L+P++ +SE++ +F+IGF + LPF+++D++V+++++A+G
Sbjct: 125 GEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALG 184

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           MMM+ P +IS P K++ FV +DGW+LL + L+  ++
Sbjct: 185 MMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQYM 220


>gi|973298|gb|AAC43960.1| SpaP [Salmonella enterica]
 gi|975743|gb|AAC43837.1| SpaP [Salmonella enterica]
 gi|975747|gb|AAC43840.1| SpaP [Salmonella enterica]
 gi|975751|gb|AAC43843.1| SpaP [Salmonella enterica]
          Length = 224

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 51/216 (23%), Positives = 115/216 (53%), Gaps = 9/216 (4%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +    +    ++ P ++   TCF +F IVF ++R  +G+  +P N+ +  +AL ++ +VM
Sbjct: 5   ISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSMFVM 64

Query: 100 SPTLDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
            P +  +           N+  + +  +    + +  ++   +  + +  F +       
Sbjct: 65  WPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQFFENAQLKRQY 124

Query: 158 NT-------DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
                    D  + +      L+P++ +SE++ +F+IGF + LPF+++D++V+++++A+G
Sbjct: 125 GEETEAVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALG 184

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           MMM+ P +IS P K++ FV +DGW+LL + L+  ++
Sbjct: 185 MMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQYM 220


>gi|123443727|ref|YP_001007698.1| surface presentation of antigens protein SpaP [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|15088594|gb|AAK84105.1|AF369954_3 YsaR [Yersinia enterocolitica]
 gi|122090688|emb|CAL13564.1| type III secretion apparatus protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 224

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 59/211 (27%), Positives = 113/211 (53%), Gaps = 4/211 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +    I    S+ P ++   TC+ +  IV  ++R  MG+  VP  L +  +AL ++ +VM
Sbjct: 9   IPLLAIVAFSSLLPFVIAAGTCYLKISIVLIMVRNAMGVQQVPSGLALNGIALLLSLFVM 68

Query: 100 SPTLDRSIEMG--IQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
            P +          +   +N  +    I      +  +++  +  + L+ F  +      
Sbjct: 69  MPVIQDVNHYMRTEKVDFSNVDSVDKFIDGGLGSYTAYLKKYSDPELLNFFESLQQGRSE 128

Query: 158 NTDITKND--HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
              + + D        L+P++ +SE++ +FEIGF I LPF++ID+I+++I++A+GMMM+ 
Sbjct: 129 EESMAEADTREPALFSLLPAYALSEIKSAFEIGFYIYLPFVVIDLIISSILLALGMMMMS 188

Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           P +IS+P K+I FV IDGW+L+ + L+  ++
Sbjct: 189 PVTISVPVKLILFVAIDGWALISKGLIMQYM 219


>gi|296162490|ref|ZP_06845281.1| Yop virulence translocation R [Burkholderia sp. Ch1-1]
 gi|295887303|gb|EFG67130.1| Yop virulence translocation R [Burkholderia sp. Ch1-1]
          Length = 211

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 71/207 (34%), Positives = 118/207 (57%), Gaps = 4/207 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++T  +F +L + P+ + M T F +F IV ++LR+ +G+   P NLVI  LAL  T  VM
Sbjct: 8   LQTISLFFMLGLMPLAVAMTTSFTKFSIVLTLLRSALGVQQAPSNLVISGLALAATLVVM 67

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +PT+ +  E  +          T  +Q V  P   FM  ++R  +    +  A       
Sbjct: 68  APTISKI-EAALDNGDGAMPRATELLQAVRGPLGDFMLKHSRADERQFLVGAAKRIDPER 126

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           +  + D    ++LIP+F+ISE+   FE GFL+ + FL++D++VA ++ AMGMMML P+++
Sbjct: 127 EARETD---MQLLIPAFLISEISSGFEAGFLLYIAFLVVDLVVANVLSAMGMMMLSPSTV 183

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
           S+P K+  FV + G S L+  L+ S++
Sbjct: 184 SIPLKLFIFVSVSGMSKLMHGLIVSYV 210


>gi|269138236|ref|YP_003294936.1| type three secretion apparatus protein R [Edwardsiella tarda
           EIB202]
 gi|61743015|gb|AAX55235.1| EsaR [Edwardsiella tarda]
 gi|62199649|gb|AAX76923.1| EsaR [Edwardsiella tarda]
 gi|267983896|gb|ACY83725.1| type three secretion apparatus protein R [Edwardsiella tarda
           EIB202]
 gi|304558279|gb|ADM40943.1| EsaR [Edwardsiella tarda FL6-60]
          Length = 215

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 67/214 (31%), Positives = 119/214 (55%), Gaps = 1/214 (0%)

Query: 33  LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
           +S++        +   LS+ P+L++M T F +  +VF++LR  +G+  +PPN+ +  LAL
Sbjct: 1   MSLTEQPAELIALLVTLSLLPLLIVMGTSFLKLSVVFALLRNALGIQQIPPNIALYGLAL 60

Query: 93  FMTFYVMSPTLDRS-IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
            +T ++M+P        +   P                +P+  F+R +T    L  F  +
Sbjct: 61  ILTLFIMTPVGTAVQARLADAPAEAQTTLLARLSDNTLDPYRQFLRQHTSATQLHFFRQV 120

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           A  S   +   +       +L+P+F +S+L  +F+IG L+ LPF+ ID+IV+ I++AMGM
Sbjct: 121 ATKSWPASVREQISDDSLLLLMPAFAVSQLVEAFQIGLLLFLPFIAIDLIVSNILLAMGM 180

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MM+ P +IS+PFK++ F+L+ GW  L+  L+ S+
Sbjct: 181 MMVSPMTISMPFKLLVFILVGGWDKLLGQLLLSY 214


>gi|85060062|ref|YP_455764.1| surface presentation of antigens protein SpaP [Sodalis glossinidius
           str. 'morsitans']
 gi|45504775|gb|AAS66865.1| SpaP [Sodalis glossinidius]
 gi|84780582|dbj|BAE75359.1| type III secretion apparatus SpaP [Sodalis glossinidius str.
           'morsitans']
          Length = 233

 Score =  155 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 54/208 (25%), Positives = 114/208 (54%), Gaps = 3/208 (1%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
             GI  + ++ P ++   TC+ +F IVF ++R  +G+  VP NL +  +AL +  ++M P
Sbjct: 13  LIGILALATLLPFIIASGTCYIKFSIVFVMVRNALGLQQVPSNLTLNGIALMLAMFIMGP 72

Query: 102 TLDRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
               +     +    + +  +    ++   E +  +++     +    F           
Sbjct: 73  IAGDAYNAYQEQPVALGSAASVLEFLENSMESYRHYLQKYADPRLTEFFDRAHGGGGAAH 132

Query: 160 DITKNDHIE-YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
           D   + H      L+P++ +SE++ SF IGF + LPF+++D++++++++A+GMMM+ P +
Sbjct: 133 DAPASGHAPSMLALLPAYALSEIKDSFRIGFYLYLPFVVVDLLISSVLLALGMMMMSPIT 192

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +S+P K++ FV++DGW+LL + LV  ++
Sbjct: 193 LSVPIKLVLFVMLDGWTLLSQGLVLQYL 220


>gi|323388136|gb|ADX60332.1| type III secretion protein RscR [Pseudomonas fluorescens]
          Length = 217

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 66/209 (31%), Positives = 118/209 (56%), Gaps = 2/209 (0%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +        LS+ P+LLI+ T F + +IV  I R  +G+  VPP++ I  +AL  T ++M
Sbjct: 9   LVLALFLGSLSLMPMLLIICTSFLKIVIVLMITRNAIGVQQVPPSMAINGIALAATLFIM 68

Query: 100 SPTLDRSIEMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
           +P   +  E      ++    ++     Q   +P   FM  NT    L+  ++ +     
Sbjct: 69  APVGYQIAENVKASPVDTSSVQSLLETGQAAIQPLRAFMLRNTDADVLTHLLENSARMWP 128

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
                     +  +L+P+F++S+L+  FEIGFLI +PF++ID+IV+ +++A+GM M+ P 
Sbjct: 129 PEMAQSTQREDLILLVPAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPM 188

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +ISLP K++ FV++ GWS L+++L  S++
Sbjct: 189 TISLPLKLLLFVMVSGWSRLLDSLFLSYL 217


>gi|222082189|ref|YP_002541554.1| type III secretion system protein [Agrobacterium radiobacter K84]
 gi|221726868|gb|ACM29957.1| type III secretion apparatus protein, YscR/HrcR family
           [Agrobacterium radiobacter K84]
          Length = 218

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 67/207 (32%), Positives = 118/207 (57%), Gaps = 2/207 (0%)

Query: 41  RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100
           +       +SI P++ ++ T F +  +V  I+R  +G+   PPNL++ ++A+ ++ +VM+
Sbjct: 10  QGLAAMAAISILPVIAVVATSFTKIAVVLLIVRNAIGIQQTPPNLLVFAIAIVLSAFVMN 69

Query: 101 PTLDRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
           P L +  ++ ++     +        +  V  P   FM   + E+    F++ +     +
Sbjct: 70  PILQQCWQVLLRADVHFDTINGLAAGLSEVGAPLKAFMMKFSDEEVRQFFVNSSQRIWGD 129

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
           T        +  +L PSF++SEL R+FEIGFL+ LPFL+ID  V+ I++A+GM M+ PT 
Sbjct: 130 TATLPASPDDITVLTPSFLVSELTRAFEIGFLLYLPFLMIDFAVSAILVALGMQMMSPTV 189

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +S PFK++ FV +DGW  L+E LV S+
Sbjct: 190 VSTPFKLLLFVGVDGWRRLLEGLVLSY 216


>gi|83718329|ref|YP_439033.1| surface presentation of antigens protein SpaP [Burkholderia
           thailandensis E264]
 gi|167577439|ref|ZP_02370313.1| surface presentation of antigens protein SpaP [Burkholderia
           thailandensis TXDOH]
 gi|167615590|ref|ZP_02384225.1| surface presentation of antigens protein SpaP [Burkholderia
           thailandensis Bt4]
 gi|257142141|ref|ZP_05590403.1| surface presentation of antigens protein SpaP [Burkholderia
           thailandensis E264]
 gi|83652154|gb|ABC36218.1| type III secretion system protein BsaW [Burkholderia thailandensis
           E264]
          Length = 230

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 115/221 (52%), Gaps = 14/221 (6%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +    + T  ++ P ++   +CF +F IV  ++R  +G+  VP NL + S+AL M+ +VM
Sbjct: 6   IALIVLLTAATLVPFVVAAGSCFIKFSIVLVLVRNALGIQQVPSNLALNSIALIMSLFVM 65

Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
            P    +        ++  N  +    I      +  ++   +  + +  F     +  +
Sbjct: 66  MPVAQSAYRYLQHHPLDVMNGSSVNDFIDGGLGDYKRYLTRYSDPELVRFFERAQAARLK 125

Query: 158 NT------------DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
                         D           L+P++ ++E++ +F+IGF + LPFL++DM+V+++
Sbjct: 126 RDDADAADADADAGDEPDGLDNSLFSLLPAYALTEIKSAFKIGFYLYLPFLVVDMVVSSV 185

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           ++A+GMMM+ P +IS+P K+I FV +DGW+L+ + L++ ++
Sbjct: 186 LLALGMMMMSPVTISVPIKLILFVAMDGWTLICKGLIEQYL 226


>gi|15833837|ref|NP_312610.1| type III secretion system protein [Escherichia coli O157:H7 str.
           Sakai]
 gi|13364058|dbj|BAB38006.1| type III secretion system EscR protein [Escherichia coli O157:H7
           str. Sakai]
          Length = 217

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 70/212 (33%), Positives = 125/212 (58%), Gaps = 4/212 (1%)

Query: 33  LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
           ++I +  +    +F +LS+ PI + + T F +  IV  IL+  +G+  VPPN+ + S++L
Sbjct: 5   MTIGSQPIFLIIVFFLLSLLPIFVGIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSL 64

Query: 93  FMTFYVMSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
            +T ++MSP + +  +   Q  +N  +        +++  P+  F+  NT + ++  F  
Sbjct: 65  ILTMFIMSPIILQINDNISQEPINYTDSDFFQKVDEKILSPYRGFLEKNTEKDNVEFFER 124

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
            A     N  I K D     IL+P+F + +L  +F+IGFL+ LPF+ ID+I++ I++A+G
Sbjct: 125 AAQKKLGNETILKKD--SLFILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALG 182

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
           MMM+ P +IS+PFK++ F+L+ GW  L E L+
Sbjct: 183 MMMVSPVTISIPFKILLFILVGGWQKLFEFLL 214


>gi|238898597|ref|YP_002924278.1| type III surface presentation of antigens protein [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|75906094|gb|ABA29437.1| putative type III secretion system protein [Candidatus Hamiltonella
           defensa]
 gi|229466356|gb|ACQ68130.1| type III surface presentation of antigens protein [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 221

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 57/211 (27%), Positives = 118/211 (55%), Gaps = 5/211 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +    I    ++ P ++   TC+ +F IVF ++R  +G+  +P N+ +  +AL +  +VM
Sbjct: 5   ISLISILAFSTLLPFVIASGTCYIKFSIVFVMVRNALGLQQIPSNMTLNGVALLLASFVM 64

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL--FMDMAHSSHR 157
            P +    E G +    +    ++ I+ V      +     +  D  L  F + A S  +
Sbjct: 65  MPIVKNIYE-GHKNAQFDVRNLSSVIEFVENGLDGYRSYLVKYADPELTQFFEKAASDRK 123

Query: 158 NTDITKNDH--IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
             D    +        L+P++ +SE++ +F+IGF I LPF+++D+++++I++A+GMMM+ 
Sbjct: 124 EEDFAGAEEEKPSIFALLPAYALSEIKSAFKIGFYIYLPFVVVDLLISSILLALGMMMMS 183

Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           P +IS+P K++ FV++DGW+L+ + ++  ++
Sbjct: 184 PVTISVPIKLVLFVVLDGWTLISKGMILQYM 214


>gi|329902179|ref|ZP_08273068.1| type III secretion protein HrcR [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548850|gb|EGF33479.1| type III secretion protein HrcR [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 217

 Score =  155 bits (391), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 60/215 (27%), Positives = 113/215 (52%), Gaps = 2/215 (0%)

Query: 33  LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
            +    IV    +  +L++ P++++  T F +  +V  + R  +G+  VPP L I  +AL
Sbjct: 2   GAGKFDIVSFSILLAMLALVPLIVVTTTSFLKIALVMLVTRNALGVQQVPPTLAIYGIAL 61

Query: 93  FMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA--EPFWVFMRNNTREKDLSLFMD 150
            +T +VMSPT+                T+          EP   FM  + + +   +F+ 
Sbjct: 62  SLTLFVMSPTVQEIGNHVAAMEAEQTTTKRGVADAQIAFEPLRTFMLKHCKPEQREIFLA 121

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
            A          +    +  +L+P+F++SEL+  +E+ FLI +PF++ID++V+ ++MA+G
Sbjct: 122 SAKKLWPKEFAAEAKSTDVLVLVPAFVVSELQTGYEVAFLIYIPFVVIDLLVSNLLMALG 181

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M  + P +I++P K++ FV++DGW  L+  L  S+
Sbjct: 182 MQQVSPQTITVPLKLLLFVMVDGWGKLLNALAMSY 216


>gi|975755|gb|AAC43846.1| SpaP [Salmonella enterica]
 gi|975759|gb|AAC43849.1| SpaP [Salmonella enterica]
          Length = 224

 Score =  155 bits (391), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 51/216 (23%), Positives = 114/216 (52%), Gaps = 9/216 (4%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +    +    ++ P ++   TCF +F IVF ++R  +G+  +P N+ +  +AL ++ +VM
Sbjct: 5   ISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNGVALLLSMFVM 64

Query: 100 SPTLDRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
            P +  +           N+  + +  +    + +  ++   +  + +  F         
Sbjct: 65  WPIMHDAYVYFEDEGVSFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQFFESAQLKRQY 124

Query: 158 NT-------DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
                    D  + +      L+P++ +SE++ +F+IGF + LPF+++D++V+++++A+G
Sbjct: 125 GEETETVKRDKEEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALG 184

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           MMM+ P +IS P K++ FV +DGW+LL + L+  ++
Sbjct: 185 MMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQYM 220


>gi|309703222|emb|CBJ02557.1| type III secretion system protein [Escherichia coli ETEC H10407]
          Length = 221

 Score =  155 bits (391), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 58/213 (27%), Positives = 119/213 (55%), Gaps = 4/213 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  +    I ++ ++ P ++   T F +F IVF I+R  +G+  VP N+ +  +AL ++ 
Sbjct: 2   SNSISLIAILSLFTLLPFIIASGTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61

Query: 97  YVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-- 152
           +VM P             +  NN  +    ++     +  ++   +  + ++ F  +   
Sbjct: 62  FVMMPVGKEIYYNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVNFFEKIQKV 121

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
           +SS  N  I  +D+I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM
Sbjct: 122 NSSEDNEVIFDDDNISIISLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+ P +IS P K+I FV +DGW++L + L+  +
Sbjct: 182 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214


>gi|254469150|ref|ZP_05082555.1| type III secretion apparatus protein, YscR/HrcR family
           [Pseudovibrio sp. JE062]
 gi|211960985|gb|EEA96180.1| type III secretion apparatus protein, YscR/HrcR family
           [Pseudovibrio sp. JE062]
          Length = 214

 Score =  155 bits (391), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 64/207 (30%), Positives = 116/207 (56%), Gaps = 2/207 (0%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
                 ++++ P L I+ T F +  +V  ++R  +G+  +PPN+ + +LA+ ++ Y+M P
Sbjct: 8   LILALVVVALVPFLAIVATSFIKLSVVLLLVRNALGVQQIPPNMALNALAIILSGYIMLP 67

Query: 102 TLDRSIEMGIQ--PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
              ++ E+  +    +       T       P   F+  +   K+ + F++ +       
Sbjct: 68  VFLQTFEILEKGNYSIATVEDMKTTFVAAKGPLEKFLAKHADSKEKAFFLEASRQLWPAE 127

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                      IL+P++ +S+LR +FEIGFL+ LPFL ID++V+ I++AMGMMM+ P +I
Sbjct: 128 VADSMSADSIAILLPAYTVSQLREAFEIGFLLYLPFLAIDLVVSNILLAMGMMMVSPLTI 187

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
           SLPFK+  FV +DGWS L+  L+K+++
Sbjct: 188 SLPFKLFLFVAVDGWSRLILGLIKTYV 214


>gi|157162320|ref|YP_001459638.1| surface presentation of antigens protein SpaP [Escherichia coli HS]
 gi|157068000|gb|ABV07255.1| type III secretion apparatus protein EpaP [Escherichia coli HS]
          Length = 221

 Score =  154 bits (390), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 58/213 (27%), Positives = 119/213 (55%), Gaps = 4/213 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  +    I ++ ++ P ++   T F +F IVF I+R  +G+  VP N+ +  +AL ++ 
Sbjct: 2   SNSISLIAILSLFTLLPFIIASGTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61

Query: 97  YVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-- 152
           +VM P             +  NN  +    ++     +  ++   +  + ++ F  +   
Sbjct: 62  FVMMPVGKEIYYNSQNENLSFNNLASVVNFVETGMSGYKSYLIKYSEPELVNFFEKIQKV 121

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
           +SS  N +I  +D+I    L+P++ +SE++ +F IGF I LPF+++D++++ +++ +GMM
Sbjct: 122 NSSEDNEEIFDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISIVLLTLGMM 181

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+ P +IS P K+I FV +DGW++L + L+  +
Sbjct: 182 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214


>gi|167567196|ref|ZP_02360112.1| flagellar biosynthesis protein FliP [Burkholderia oklahomensis
           EO147]
 gi|167574620|ref|ZP_02367494.1| flagellar biosynthesis protein FliP [Burkholderia oklahomensis
           C6786]
          Length = 249

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 80/220 (36%), Positives = 125/220 (56%), Gaps = 7/220 (3%)

Query: 25  DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
           + + +P+D S+ T   +     T+L + P+L I+ T F RF+IV ++LR  +G+    P 
Sbjct: 33  ESLGLPSDYSVKT---QILLFMTLLGLLPMLAIVTTSFLRFVIVLALLRQALGLQQGLPT 89

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
            V+  +AL +T  VM P         I+P   ++IT   A+ R   P   FM   T +  
Sbjct: 90  RVVAGVALLLTLLVMRPVGLDVWRNAIEPYDLDKITFREAVDRAQLPLSRFMLAQTNKAS 149

Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
           L     +A       D+ + +   + +   +FM+SEL+ +F+IG ++ LPFLIID++VA+
Sbjct: 150 LEQIARLAGEK----DLARPEDHAFVVKAAAFMLSELKTAFQIGSMLFLPFLIIDLVVAS 205

Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
            +MAMGMMML P  ISLP K++ FVL+DGW+L V+ L  S
Sbjct: 206 TLMAMGMMMLSPLVISLPLKLLLFVLVDGWTLTVDTLATS 245


>gi|16761667|ref|NP_457284.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29143151|ref|NP_806493.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213052434|ref|ZP_03345312.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213425708|ref|ZP_03358458.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213580302|ref|ZP_03362128.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213609304|ref|ZP_03369130.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213649910|ref|ZP_03379963.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213853010|ref|ZP_03382542.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|289810466|ref|ZP_06541095.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
 gi|289829392|ref|ZP_06547004.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|2494565|sp|Q56023|SPAP_SALTI RecName: Full=Surface presentation of antigens protein spaP
 gi|25316657|pir||AF0851 secretory protein (associated with virulence) [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|975771|gb|AAC43861.1| SpaP [Salmonella enterica subsp. enterica serovar Typhi]
 gi|16503968|emb|CAD05997.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29138784|gb|AAO70353.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 224

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 52/216 (24%), Positives = 116/216 (53%), Gaps = 9/216 (4%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +    +    ++ P ++   TCF +F IVF ++R  +G+  +P N+ + S+AL ++ +VM
Sbjct: 5   ISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNSVALLLSMFVM 64

Query: 100 SPTLDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
            P +  +           N+  + +  +    + +  ++   +  + +  F +       
Sbjct: 65  WPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQFFENAQLKRQY 124

Query: 158 NT-------DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
                    D  + +      L+P++ +SE++ +F+IGF + LPF+++D++V+++++A+G
Sbjct: 125 GEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSVLLALG 184

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           MMM+ P +IS P K++ FV +DGW+LL + L+  ++
Sbjct: 185 MMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQYM 220


>gi|193062099|ref|ZP_03043195.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli E22]
 gi|192932319|gb|EDV84917.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli E22]
          Length = 217

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 69/212 (32%), Positives = 126/212 (59%), Gaps = 4/212 (1%)

Query: 33  LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
           ++I +  +    +F +LS+ PI +++ T F +  IV  IL+  +G+  VPPN+ + S++L
Sbjct: 5   MTIGSQPIFLIIVFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSL 64

Query: 93  FMTFYVMSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
            +T ++MSP + +  +   Q  +N  +        +++  P+  F+  N  ++++  F  
Sbjct: 65  ILTMFIMSPIILQINDNISQEPINYTDSDFFQKVDEKILSPYRGFLEKNIEKENVEFFER 124

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
            A     N  I K D     IL+P+F + +L  +F+IGFL+ LPF+ ID+I++ I++A+G
Sbjct: 125 AAQKKLGNETILKKD--SLFILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALG 182

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
           MMM+ P +IS+PFK++ F+L+ GW  L E L+
Sbjct: 183 MMMVSPVTISIPFKILLFILVGGWQKLFEFLL 214


>gi|21492903|ref|NP_659978.1| type III secretion system protein [Rhizobium etli CFN 42]
 gi|218508018|ref|ZP_03505896.1| type III secretion system protein [Rhizobium etli Brasil 5]
 gi|218674847|ref|ZP_03524516.1| type III secretion system protein [Rhizobium etli GR56]
 gi|21467328|gb|AAM54991.1| type III secretion system translocation protein [Rhizobium etli CFN
           42]
          Length = 217

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 69/207 (33%), Positives = 115/207 (55%), Gaps = 2/207 (0%)

Query: 41  RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100
           ++      +S+ P++ ++ T F +  +V  I+R  +G+   PPNL++ ++A+ ++ +VM+
Sbjct: 9   QSLAAMAAISMLPVIAVIATSFTKISVVLLIVRNAIGIQQTPPNLLVFAIAIVLSAFVMN 68

Query: 101 PTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
           P L  S ++                 + +VA P   FM   +  +    F+  +     N
Sbjct: 69  PVLQNSWQLLLAHSGDFGTVSGMADGMIKVAAPLKDFMLKFSDAEVRDFFVQASQKIWAN 128

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
              T     +  +L PSF++SEL R+FEIGFLI LPFL+ID  V+ I++A+GM M+ PT 
Sbjct: 129 APATPIASDDITVLTPSFLVSELTRAFEIGFLIYLPFLMIDFAVSAILVALGMQMMSPTV 188

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +S P K++ FV IDGW  L+E LV S+
Sbjct: 189 VSTPLKLLLFVSIDGWRRLLEGLVLSY 215


>gi|188534036|ref|YP_001907833.1| surface presentation of antigens protein SpaP [Erwinia tasmaniensis
           Et1/99]
 gi|188029078|emb|CAO96946.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99]
          Length = 223

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 57/213 (26%), Positives = 114/213 (53%), Gaps = 6/213 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +    + +  ++ P ++   TCF +F IV  ++R  +G+  VP NL +  +AL +T +VM
Sbjct: 6   ISLIALLSFFTLLPFIIAGGTCFIKFSIVLVMMRNALGIQQVPSNLTLNGVALVLTAFVM 65

Query: 100 SPTLDRS--IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
            P   R            N +   +  +    E +  ++   +    +  F ++ H +  
Sbjct: 66  MPVCQRISGYIEAKSLDFNERGALSQLMNEGIESYREYLVRYSDHNLILFFNNVEHRNEV 125

Query: 158 NTDITKNDH----IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
             +    D     +    L+P++ +SE++ +F I F + +PF++ID++V++I++A+GMMM
Sbjct: 126 TLEDRVPDEELSQLSLLTLMPAYALSEIQSAFRIAFYLYIPFVVIDLVVSSILLALGMMM 185

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           + P +IS+P K+I FV +DGW+LL + L+  ++
Sbjct: 186 MSPVTISIPIKLILFVAMDGWALLAKGLITQYL 218


>gi|153003617|ref|YP_001377942.1| type III secretion system protein [Anaeromyxobacter sp. Fw109-5]
 gi|152027190|gb|ABS24958.1| Yop virulence translocation R [Anaeromyxobacter sp. Fw109-5]
          Length = 223

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 70/189 (37%), Positives = 115/189 (60%), Gaps = 2/189 (1%)

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           M+T F + ++V SI R+ +G   VPPN  +  LAL +T  VM+P  +R++         +
Sbjct: 34  MLTSFLKIVVVLSIARSALGAPQVPPNTAVTGLALVLTALVMAPVGERAVAAMRAAPAGH 93

Query: 118 QITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
            +  T A ++R ++P   F+    R  D + F+D+A    R  D       +  +L P+F
Sbjct: 94  GVAGTLAQLERGSDPLRGFLLRFARADDRAAFVDVARR-LRGPDAAPPAERDLAVLAPAF 152

Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
           ++SELRR+F IGFL+ +PFL++D++V+ +++A+G+  L PTSI+LPFK++ FV +DGW L
Sbjct: 153 VVSELRRAFTIGFLVFVPFLVVDLVVSNVLLALGLTQLSPTSIALPFKLLLFVAVDGWKL 212

Query: 237 LVENLVKSF 245
           L   L  S+
Sbjct: 213 LARALALSY 221


>gi|300310129|ref|YP_003774221.1| type III secretion HrcR transmembrane protein [Herbaspirillum
           seropedicae SmR1]
 gi|300072914|gb|ADJ62313.1| type III secretion HrcR transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 220

 Score =  153 bits (388), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 60/219 (27%), Positives = 118/219 (53%), Gaps = 5/219 (2%)

Query: 33  LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
           LS    +V    +  ++++ P++++  T F +  +V  +LR  +G+  VPP L I  +AL
Sbjct: 2   LSGQFDVVSFSVLLALMALVPLMVVTTTSFLKISLVLLVLRNAIGVQQVPPTLAIYGIAL 61

Query: 93  FMTFYVMSPTLDRSIEMGI-----QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147
            ++ ++M+PT+    +  +      P  +  +      Q   +P   FM   +  +   +
Sbjct: 62  ALSVFIMAPTVQEVGKRAMAVDVSHPAASRTVPILERAQDAFDPLRKFMLKMSHAEQREM 121

Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
           F+  A               +  ILIP+F++SEL+  +EIGFLI +PF++ID++++ ++M
Sbjct: 122 FLASAKKLWPKEAAKDAQPTDALILIPAFVVSELQTGYEIGFLIYIPFVVIDLLISNLLM 181

Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           A+GM  + P +I++P K++ F L+ GW+ L+  L  S++
Sbjct: 182 ALGMQQVSPQTITIPLKLLLFTLVGGWAKLLNALAMSYV 220


>gi|170766856|ref|ZP_02901309.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           albertii TW07627]
 gi|170124294|gb|EDS93225.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           albertii TW07627]
 gi|315617513|gb|EFU98119.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli 3431]
          Length = 217

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 70/212 (33%), Positives = 131/212 (61%), Gaps = 4/212 (1%)

Query: 33  LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
           ++I +  +    +F +LS+ PI +++ T F +  IV  IL+  +G+  VPPN+ + S++L
Sbjct: 5   MTIGSQPIFLIIVFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSL 64

Query: 93  FMTFYVMSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
            +T ++MSP + +  +   Q  ++  +        +++  P+ VF+  NT +++++ F +
Sbjct: 65  ILTMFIMSPIILQINDNISQEQISYTDSDFFQKVDEKILSPYRVFLEKNTDKENVAFFEN 124

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           +A     N  I K D     IL+P+F + +L  +F+IGFL+ LPF+ ID+I++ I++A+G
Sbjct: 125 VAQKKLGNETILKKD--SLFILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALG 182

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
           MMM+ P +IS+PFK++ F+L+ GW  L E L+
Sbjct: 183 MMMVSPVTISIPFKILLFILVGGWQKLFEFLL 214


>gi|9663064|emb|CAC01097.1| FliP flagellar protein [Helicobacter pylori]
 gi|9663070|emb|CAC01100.1| FliP flagellar protein [Helicobacter pylori]
 gi|9663082|emb|CAC01104.1| FliP flagellar protein [Helicobacter pylori]
 gi|9663108|emb|CAC01117.1| FliP flagellar protein [Helicobacter pylori]
          Length = 160

 Score =  153 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 69/161 (42%), Positives = 108/161 (67%), Gaps = 4/161 (2%)

Query: 39  IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
            +    + T+L +AP L++++T F R I+VFS LRT +G    PP  +++SL+L +TF++
Sbjct: 4   TLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFI 63

Query: 99  MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
           M P+L ++ + GI+P M+ +I+ T A ++ A PF  FM  NTREKDL+LF  + +  +  
Sbjct: 64  MEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPK 123

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
           T     D +   +LIP+FMISEL+ +F+IGFL+ LPFL+ID
Sbjct: 124 T----PDDVSLSVLIPAFMISELKTAFQIGFLLYLPFLVID 160


>gi|190894060|ref|YP_001984354.1| type III secretion system translocation protein [Rhizobium etli
           CIAT 652]
 gi|190699721|gb|ACE93804.1| type III secretion system translocation protein [Rhizobium etli
           CIAT 652]
          Length = 217

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 69/207 (33%), Positives = 115/207 (55%), Gaps = 2/207 (0%)

Query: 41  RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100
           ++      +S+ P++ ++ T F +  +V  I+R  +G+   PPNL++ ++A+ ++ +VM+
Sbjct: 9   QSLVAMAAISMLPVIAVIATSFTKISVVLLIVRNAIGIQQTPPNLLVFAIAIVLSAFVMN 68

Query: 101 PTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
           P L  S ++                 + +VA P   FM   +  +    F+  +     N
Sbjct: 69  PVLQNSWQLLLAHSGDFGTVSGMADGMIKVAAPLKDFMLKFSDAEVRDFFVQASQKIWAN 128

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
              T     +  +L PSF++SEL R+FEIGFLI LPFL+ID  V+ I++A+GM M+ PT 
Sbjct: 129 APATSIASDDITVLTPSFLVSELTRAFEIGFLIYLPFLMIDFAVSAILVALGMQMMSPTV 188

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +S P K++ FV IDGW  L+E LV S+
Sbjct: 189 VSTPLKLLLFVSIDGWRRLLEGLVLSY 215


>gi|227357591|ref|ZP_03841944.1| flagellar biosynthesis protein FliP [Proteus mirabilis ATCC 29906]
 gi|227162301|gb|EEI47305.1| flagellar biosynthesis protein FliP [Proteus mirabilis ATCC 29906]
          Length = 219

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 56/198 (28%), Positives = 112/198 (56%), Gaps = 6/198 (3%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P ++   TC+ +F IV  + R  +G+  VP N+V+ ++AL M  +VM+P         I+
Sbjct: 18  PFIIAAGTCYLKFSIVLVMTRNALGVQQVPSNMVLNAIALMMALFVMTPITKNICYYVIE 77

Query: 113 PLMNNQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIE 168
             ++  ++   AI+  +      +  ++ + +    L+ F     +   +    +N    
Sbjct: 78  NKVD--MSSPDAIESFSNEALGDYKKYLYHYSDPDLLAFFEQAQENRPNSDGDKENIENS 135

Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
              L+P++ +SE++ +F IGF + LPF++ID++V+ I++A+GMMM+ P ++S+P K+I F
Sbjct: 136 LLSLLPAYALSEIKSAFIIGFYLYLPFIVIDLVVSCILLALGMMMMSPITLSVPLKLILF 195

Query: 229 VLIDGWSLLVENLVKSFI 246
           + +DGW LL + L+  ++
Sbjct: 196 IAMDGWGLLSKGLINQYL 213


>gi|283786652|ref|YP_003366517.1| T3SS structural protein EscR [Citrobacter rodentium ICC168]
 gi|15723907|gb|AAL06354.1|AF311901_6 EscR [Citrobacter rodentium]
 gi|282950106|emb|CBG89741.1| T3SS structural protein EscR [Citrobacter rodentium ICC168]
          Length = 217

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 70/212 (33%), Positives = 127/212 (59%), Gaps = 4/212 (1%)

Query: 33  LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
           ++I +  +    +F   S+ PI +++ T F +  IV  IL+  +G+  VPPN+ + S++L
Sbjct: 5   MTIGSQPIFLIVVFFFFSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSL 64

Query: 93  FMTFYVMSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
            +T ++MSP + +  +   Q  +N  +         ++  P+ +F+ NNT ++++  F +
Sbjct: 65  ILTIFIMSPIILQINDNISQEPINYTDSDFYQKVDGKIISPYRIFLENNTNKENIDFFEN 124

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           +A     N    K D     IL+P+F + +L  +F+IGFL+ LPF+ ID+I++ I++A+G
Sbjct: 125 VAKKKLGNETSLKKD--SLFILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALG 182

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
           MMM+ P +IS+PFK++ F+LI GW  L E L+
Sbjct: 183 MMMVSPVTISIPFKILLFILIGGWQKLFEFLL 214


>gi|9663072|emb|CAC01101.1| FliP flagellar protein [Helicobacter pylori]
          Length = 160

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 68/161 (42%), Positives = 107/161 (66%), Gaps = 4/161 (2%)

Query: 39  IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
            +    + T+L +AP L++++T F R I+VFS LRT +G    PP  +++SL+L +TF++
Sbjct: 4   TLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFI 63

Query: 99  MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
           M P+L ++ + GI+P M+ +I+ T A ++   PF  FM  NTREKDL+LF  + +  +  
Sbjct: 64  MEPSLKKAYDTGIKPYMDKKISYTEAFEKSTLPFKEFMLKNTREKDLALFFRIRNLPNPK 123

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
           T     D +   +LIP+FMISEL+ +F+IGFL+ LPFL+ID
Sbjct: 124 T----PDDVSLSVLIPAFMISELKTAFQIGFLLYLPFLVID 160


>gi|9663100|emb|CAC01113.1| FliP flagellar protein [Helicobacter pylori]
          Length = 160

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 69/161 (42%), Positives = 107/161 (66%), Gaps = 4/161 (2%)

Query: 39  IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
            +    + T+L +AP L++++T F R I+VFS LRT +G    PP  +++SL+L +TF++
Sbjct: 4   TLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFI 63

Query: 99  MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
           M P L ++ + GI+P M+ +I+ T A ++ A PF  FM  NTREKDL+LF  + +  +  
Sbjct: 64  MEPNLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPK 123

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
           T     D +   +LIP+FMISEL+ +F+IGFL+ LPFL+ID
Sbjct: 124 T----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVID 160


>gi|62085087|gb|AAX62950.1| putative type III secretion apparatus integral membrane protein
           component [Escherichia coli]
          Length = 220

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 58/213 (27%), Positives = 119/213 (55%), Gaps = 5/213 (2%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  +    I ++ ++ P ++   T F +F IVF I+R  +G+  VP N+ +  +AL ++ 
Sbjct: 2   SNSISLIAILSLFTLLPFIIASGTYFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61

Query: 97  YVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-- 152
           +VM P             +  NN  +    ++     +  ++   +  + ++ F  +   
Sbjct: 62  FVMMPVGKEIYYNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVNFFEKIQKV 121

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
           +SS  N +I  +D+I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM
Sbjct: 122 NSSEDNEEIFDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M  P +IS P K+I FV +DGW++L + L+  +
Sbjct: 182 M-SPVTISTPIKLILFVAMDGWTMLSKGLILQY 213


>gi|85058547|ref|YP_454249.1| surface presentation of antigens protein SpaP [Sodalis glossinidius
           str. 'morsitans']
 gi|45504755|gb|AAS66846.1| YsaR [Sodalis glossinidius]
 gi|84779067|dbj|BAE73844.1| type III secretion apparatus SpaP [Sodalis glossinidius str.
           'morsitans']
          Length = 226

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 57/218 (26%), Positives = 115/218 (52%), Gaps = 9/218 (4%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           T  +    + +  ++ P ++   TC+ +F IV  ++R  +G+  +P  L +  +AL +T 
Sbjct: 3   TNDMTLIVLLSFTTLLPFVIAGGTCYIKFSIVLVMVRNALGIQQIPSTLTLNGIALILTA 62

Query: 97  YVMSPTLDRS--IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
           +VM P            Q   NN  +    + +    +  ++   + +K +  F +  H 
Sbjct: 63  FVMMPVCQNISHYIETHQTNFNNIDSTMQFVDQGLGSYRDYLVRYSDKKLIRFFCETQHR 122

Query: 155 SHRNTDITKND-------HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
                  T  +        +   +L+P++ +SE++ +F+I F + +PF++IDM+V++I++
Sbjct: 123 QSGGEQETDLECTEENMSSLSLMMLMPAYALSEVQSAFKIAFFLYVPFVVIDMVVSSILL 182

Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           A+GMMM+ P +IS+P K+I FV +DGW+LL + L+  +
Sbjct: 183 ALGMMMMSPVTISIPIKLILFVAMDGWTLLTKGLILQY 220


>gi|9663066|emb|CAC01098.1| FliP flagellar protein [Helicobacter pylori]
 gi|9663068|emb|CAC01099.1| FliP flagellar protein [Helicobacter pylori]
 gi|9663074|emb|CAC01102.1| FliP flagellar protein [Helicobacter pylori]
 gi|9663076|emb|CAC01103.1| FliP flagellar protein [Helicobacter pylori]
 gi|9663084|emb|CAC01105.1| FliP flagellar protein [Helicobacter pylori]
 gi|9663086|emb|CAC01106.1| FliP flagellar protein [Helicobacter pylori]
 gi|9663088|emb|CAC01107.1| FliP flagellar protein [Helicobacter pylori]
 gi|9663092|emb|CAC01109.1| FliP flagellar protein [Helicobacter pylori]
 gi|9663094|emb|CAC01110.1| FliP flagellar protein [Helicobacter pylori]
 gi|9663096|emb|CAC01111.1| FliP flagellar protein [Helicobacter pylori]
 gi|9663104|emb|CAC01115.1| FliP flagellar protein [Helicobacter pylori]
 gi|9663106|emb|CAC01116.1| FliP flagellar protein [Helicobacter pylori]
          Length = 160

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 69/161 (42%), Positives = 108/161 (67%), Gaps = 4/161 (2%)

Query: 39  IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
            +    + T+L +AP L++++T F R I+VFS LRT +G    PP  +++SL+L +TF++
Sbjct: 4   TLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFI 63

Query: 99  MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
           M P+L ++ + GI+P M+ +I+ T A ++ A PF  FM  NTREKDL+LF  + +  +  
Sbjct: 64  MEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPK 123

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
           T     D +   +LIP+FMISEL+ +F+IGFL+ LPFL+ID
Sbjct: 124 T----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVID 160


>gi|254575132|gb|ACT68033.1| type III secretion apparatus [Pantoea stewartii subsp. stewartii
           DC283]
          Length = 223

 Score =  153 bits (386), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 54/212 (25%), Positives = 112/212 (52%), Gaps = 6/212 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +    + +  ++ P ++   TCF +F IV  ++R  +G+  VP  L +  +AL ++ +VM
Sbjct: 6   ISLIALLSFFTLLPFIIAGGTCFIKFSIVLIMVRNALGIQQVPSTLTLNGVALILSAFVM 65

Query: 100 SPTLDRS--IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM----DMAH 153
            P   R            NN  + T  +++    +  ++   +    +  F       + 
Sbjct: 66  MPVCQRISEYIESNHIDFNNSASVTQLMEQGLGSYRDYLVRYSDHDLIRFFNKVQQRRSG 125

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
                 +  +   +    L+P++ +SE++ +F+I F + +PF++IDM+V++I++A+GMMM
Sbjct: 126 EPVPEVEDHELSTLSLITLMPAYALSEIQSAFKIAFYLYVPFVVIDMVVSSILLALGMMM 185

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           + P +IS+P K+I FV ++GW+LL + L+  +
Sbjct: 186 MSPVTISIPIKLILFVSMNGWALLTKGLIAQY 217


>gi|2865276|gb|AAC38369.1| EscR [Escherichia coli]
          Length = 217

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 69/212 (32%), Positives = 125/212 (58%), Gaps = 4/212 (1%)

Query: 33  LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
           ++I +  +    +F +LS+ PI +++ T F +  IV  IL+  +G+  VPPN+ + S++L
Sbjct: 5   MTIGSQPIFLIIVFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSL 64

Query: 93  FMTFYVMSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
            +T ++MSP + +  +   Q  +N  +        +++  P+   +  NT + ++  F  
Sbjct: 65  ILTMFIMSPIILQINDNISQEPINYTDSDFFQKVDEKILSPYRGILEKNTEKDNVEFFER 124

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
            A     N  I K D     IL+P+F + +L  +F+IGFL+ LPF+ ID+I++ I++A+G
Sbjct: 125 AAQKKLGNETILKKD--SLFILLPAFTMGQLEAAFKIGFLLYLPFIAIDLIISNILLALG 182

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
           MMM+ P +IS+PFK++ F+L+ GW  L E L+
Sbjct: 183 MMMVSPVTISIPFKILLFILVGGWQKLFEFLL 214


>gi|254255042|ref|ZP_04948359.1| Flagellar transport protein FliP [Burkholderia dolosa AUO158]
 gi|124899687|gb|EAY71530.1| Flagellar transport protein FliP [Burkholderia dolosa AUO158]
          Length = 250

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 76/236 (32%), Positives = 127/236 (53%), Gaps = 4/236 (1%)

Query: 9   LFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIV 68
           +   +  LV A  +L D + I +     +   +   + T+L + P LL+ +T F R++IV
Sbjct: 15  VLCASAALVCAGPALADTLTISSGGDGLSIKTQILVLMTLLGLLPALLMTMTSFLRYVIV 74

Query: 69  FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128
            S+L+  +G+    P  VI  +AL +T   M P  +   E    P    +I    A++  
Sbjct: 75  LSLLKQALGLQQGLPARVITGVALVLTLLTMRPVGEAIWEKAYVPYEQEKIGLRQALKAA 134

Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188
             P   FM   T +  L+    ++ +        +     + + + +F++SEL+ +F+IG
Sbjct: 135 DAPLSQFMLAQTSKATLAQIAKLSGTEAIKEPTQQ----PFLVKLSAFVLSELKTAFQIG 190

Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
            ++ +PFL+ID+IVA+++MAMGMMML P  ISLP K++ FVL+DGWSL V  L+ S
Sbjct: 191 AMLFIPFLVIDIIVASVLMAMGMMMLSPLVISLPLKLLLFVLVDGWSLTVSTLLTS 246


>gi|9663102|emb|CAC01114.1| FliP flagellar protein [Helicobacter pylori]
          Length = 160

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 68/161 (42%), Positives = 107/161 (66%), Gaps = 4/161 (2%)

Query: 39  IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
            +    + T+L +AP L++++T F R I+VFS LRT +G    PP  +++SL+L +TF++
Sbjct: 4   TLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFI 63

Query: 99  MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
           M P+L ++ + GI+P M+ +I+ T A ++   PF  FM  NTREKDL+LF  + +  +  
Sbjct: 64  MEPSLKKAYDTGIKPYMDKKISYTEAFEKSTLPFKEFMLKNTREKDLALFFRIRNLPNPK 123

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
           T     D +   +LIP+FMISEL+ +F+IGFL+ LPFL+ID
Sbjct: 124 T----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVID 160


>gi|197286517|ref|YP_002152389.1| surface presentation of antigens protein SpaP [Proteus mirabilis
           HI4320]
 gi|194684004|emb|CAR45294.1| type III secretion system protein [Proteus mirabilis HI4320]
          Length = 219

 Score =  152 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 56/198 (28%), Positives = 112/198 (56%), Gaps = 6/198 (3%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P ++   TC+ +F IV  + R  +G+  VP N+V+ ++AL M  +VM+P         I+
Sbjct: 18  PFIIAAGTCYLKFSIVLVMTRNALGVQQVPSNMVLNAIALMMALFVMTPITKNICYYIIE 77

Query: 113 PLMNNQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIE 168
             ++  ++   AI+  +      +  ++ + +    L+ F     +   +    +N    
Sbjct: 78  NKVD--MSSPDAIESFSNEALGDYKKYLYHYSDPDLLAFFEQAQENRPNSDGDKENIENS 135

Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
              L+P++ +SE++ +F IGF + LPF++ID++V+ I++A+GMMM+ P ++S+P K+I F
Sbjct: 136 LLSLLPAYALSEIKSAFIIGFYLYLPFIVIDLVVSCILLALGMMMMSPITLSVPLKLILF 195

Query: 229 VLIDGWSLLVENLVKSFI 246
           + +DGW LL + L+  ++
Sbjct: 196 IAMDGWGLLSKGLINQYL 213


>gi|170698145|ref|ZP_02889224.1| Yop virulence translocation R [Burkholderia ambifaria IOP40-10]
 gi|170136910|gb|EDT05159.1| Yop virulence translocation R [Burkholderia ambifaria IOP40-10]
          Length = 223

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 61/216 (28%), Positives = 116/216 (53%), Gaps = 11/216 (5%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +    + +  ++ P ++   TC+ +F IV  ++R  +G+  VP NLV+ S+AL ++ +VM
Sbjct: 6   ILLIVLLSAATLLPFVIASGTCYVKFSIVLVLVRNALGIQQVPSNLVLNSIALILSLFVM 65

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAI-QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
            P   R+   G        +T + ++   V      +     R  D SL    AH+    
Sbjct: 66  MPVSYRAY--GYLQTHQVDMTNSQSLHDFVDGGLGDYKHYLERYADPSLVKFFAHAQAPR 123

Query: 159 TDI--------TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
                               +L+P++ +SE++ +F+IGF + +PFL++D+IV+ +++A+G
Sbjct: 124 DADDGAATDDDPSAREHALTVLLPAYALSEIKSAFKIGFYLYVPFLVVDLIVSNVLLALG 183

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           MMM+ P +IS+P K+I FV +DGW+L+ + L+  ++
Sbjct: 184 MMMMSPVTISVPIKLILFVAMDGWTLICKGLILQYM 219


>gi|327192841|gb|EGE59767.1| type III secretion system protein [Rhizobium etli CNPAF512]
          Length = 204

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 69/202 (34%), Positives = 113/202 (55%), Gaps = 2/202 (0%)

Query: 46  FTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDR 105
              +S+ P++ ++ T F +  +V  I+R  +G+   PPNL++ ++A+ ++ +VM+P L  
Sbjct: 1   MAAISMLPVIAVIATSFTKISVVLLIVRNAIGIQQTPPNLLVFAIAIVLSAFVMNPVLQN 60

Query: 106 SIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163
           S ++                 + +VA P   FM   +  +    F+  +     N   T 
Sbjct: 61  SWQLLLAHSGDFGTVSGMADGMIKVAAPLKDFMLKFSDAEVRDFFVQASQKIWANAPATP 120

Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
               +  +L PSF++SEL R+FEIGFLI LPFL+ID  V+ I++A+GM M+ PT +S P 
Sbjct: 121 IASDDITVLTPSFLVSELTRAFEIGFLIYLPFLMIDFAVSAILVALGMQMMSPTVVSTPL 180

Query: 224 KVIFFVLIDGWSLLVENLVKSF 245
           K++ FV IDGW  L+E LV S+
Sbjct: 181 KLLLFVSIDGWRRLLEGLVLSY 202


>gi|260775667|ref|ZP_05884563.1| YYop virulence translocation protein R [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608083|gb|EEX34252.1| YYop virulence translocation protein R [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 216

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 69/216 (31%), Positives = 120/216 (55%), Gaps = 2/216 (0%)

Query: 33  LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
           +S+    V        +S+ P++ I  T F +  +V  I+R  +G+  VPP++ + S+AL
Sbjct: 1   MSLDGNPVTLALFLGAMSLIPLMFITTTAFLKIAMVLMIVRNALGVQQVPPSMAVYSIAL 60

Query: 93  FMTFYVMSPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
             TF+VM+P          G +    N+      I R+  P   FM +N   +       
Sbjct: 61  AATFFVMAPVFSEIQNSVKGTESGALNEDQIVETIDRIKTPLMGFMASNVDTQISERLKS 120

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
            A             +  + IL+PSF+ISEL+  F+IGFLI +PF++ID+IV+ I++A+G
Sbjct: 121 TAREMWPARMSQSMTNESFFILLPSFVISELQAGFKIGFLIYIPFVVIDLIVSNILLALG 180

Query: 211 MMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           M M+ P ++++P K++ FVL+DGW+ L+E+L+ +++
Sbjct: 181 MQMVAPITVTVPIKILLFVLVDGWAKLLESLIYTYL 216


>gi|167573308|ref|ZP_02366182.1| surface presentation of antigens protein SpaP [Burkholderia
           oklahomensis C6786]
          Length = 229

 Score =  152 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 58/220 (26%), Positives = 116/220 (52%), Gaps = 13/220 (5%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +    + T  ++ P ++   +CF +F IV  ++R  +G+  VP NL + S+AL M+ +VM
Sbjct: 6   IALIVLLTAATLVPFVVAAGSCFIKFSIVLVLVRNALGIQQVPSNLALNSIALIMSLFVM 65

Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
            P    +        ++  N  +    I      +  ++   +  + +  F     S  +
Sbjct: 66  MPVAQSAYRYLQHHPLDVMNGTSVNDFIDGGLGDYKRYLTRYSDPELVRFFERAQASRLK 125

Query: 158 NTDITKND-----------HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
             D    D                 L+P++ ++E++ +F+IGF + LPFL++DM+V++++
Sbjct: 126 GDDADAADADVAGDEPDGFDNSLFTLLPAYALTEIKSAFKIGFYLYLPFLVVDMVVSSVL 185

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +A+GMMM+ P +IS+P K+I FV +DGW+L+ + L++ ++
Sbjct: 186 LALGMMMMSPVTISVPIKLILFVAMDGWTLISKGLIEQYL 225


>gi|134282034|ref|ZP_01768740.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 305]
 gi|134246563|gb|EBA46651.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 305]
          Length = 226

 Score =  152 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 56/217 (25%), Positives = 116/217 (53%), Gaps = 10/217 (4%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +    + T  ++ P ++   +CF +F IV  ++R  +G+  VP NL + S+AL M+ +VM
Sbjct: 6   IALIVLLTAATLVPFVVAAGSCFIKFSIVLVLVRNALGIQQVPSNLALNSIALIMSLFVM 65

Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
            P    +        ++  +  +    I      +  ++   +  + +  F     +  +
Sbjct: 66  MPVAQSAYRYLQHHPLDVMSGASVNEFIDGGLGDYKRYLARYSDPELVRFFERAQTARLK 125

Query: 158 NTDITKND--------HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
             D    D              L+P++ ++E++ +F+IGF + LPFL++DM+V+++++A+
Sbjct: 126 GDDADAADADDAPDGLDNSLFSLLPAYALTEIKSAFKIGFYLYLPFLVVDMVVSSVLLAL 185

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           GMMM+ P +IS+P K+I FV +DGW+L+ + L++ ++
Sbjct: 186 GMMMMSPVTISVPIKLILFVAMDGWTLICKGLIEQYL 222


>gi|53716462|ref|YP_106126.1| surface presentation of antigens protein SpaP [Burkholderia mallei
           ATCC 23344]
 gi|53722558|ref|YP_111543.1| surface presentation of antigens protein SpaP [Burkholderia
           pseudomallei K96243]
 gi|67641437|ref|ZP_00440216.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia mallei GB8 horse 4]
 gi|76819720|ref|YP_335736.1| surface presentation of antigens protein SpaP [Burkholderia
           pseudomallei 1710b]
 gi|124382629|ref|YP_001025864.1| surface presentation of antigens protein SpaP [Burkholderia mallei
           NCTC 10229]
 gi|126442644|ref|YP_001063161.1| surface presentation of antigens protein SpaP [Burkholderia
           pseudomallei 668]
 gi|126447432|ref|YP_001077949.1| surface presentation of antigens protein SpaP [Burkholderia mallei
           NCTC 10247]
 gi|126458099|ref|YP_001076112.1| surface presentation of antigens protein SpaP [Burkholderia
           pseudomallei 1106a]
 gi|167004216|ref|ZP_02269983.1| type III secretion system protein BsaW [Burkholderia mallei PRL-20]
 gi|167724226|ref|ZP_02407462.1| surface presentation of antigens protein SpaP [Burkholderia
           pseudomallei DM98]
 gi|167743201|ref|ZP_02415975.1| surface presentation of antigens protein SpaP [Burkholderia
           pseudomallei 14]
 gi|167820375|ref|ZP_02452055.1| surface presentation of antigens protein SpaP [Burkholderia
           pseudomallei 91]
 gi|167828747|ref|ZP_02460218.1| surface presentation of antigens protein SpaP [Burkholderia
           pseudomallei 9]
 gi|167850202|ref|ZP_02475710.1| surface presentation of antigens protein SpaP [Burkholderia
           pseudomallei B7210]
 gi|167898809|ref|ZP_02486210.1| surface presentation of antigens protein SpaP [Burkholderia
           pseudomallei 7894]
 gi|167907137|ref|ZP_02494342.1| surface presentation of antigens protein SpaP [Burkholderia
           pseudomallei NCTC 13177]
 gi|167915491|ref|ZP_02502582.1| surface presentation of antigens protein SpaP [Burkholderia
           pseudomallei 112]
 gi|167923336|ref|ZP_02510427.1| surface presentation of antigens protein SpaP [Burkholderia
           pseudomallei BCC215]
 gi|217425211|ref|ZP_03456706.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 576]
 gi|226196071|ref|ZP_03791657.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei Pakistan 9]
 gi|237509960|ref|ZP_04522675.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei MSHR346]
 gi|242313875|ref|ZP_04812892.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 1106b]
 gi|254176249|ref|ZP_04882907.1| type III secretion system protein BsaW [Burkholderia mallei ATCC
           10399]
 gi|254186856|ref|ZP_04893372.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254193764|ref|ZP_04900196.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei S13]
 gi|254200992|ref|ZP_04907357.1| type III secretion system protein BsaW [Burkholderia mallei FMH]
 gi|254204956|ref|ZP_04911309.1| type III secretion system protein BsaW [Burkholderia mallei JHU]
 gi|254265439|ref|ZP_04956304.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 1710a]
 gi|254301456|ref|ZP_04968900.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 406e]
 gi|254359075|ref|ZP_04975347.1| type III secretion system protein BsaW [Burkholderia mallei
           2002721280]
 gi|52212972|emb|CAH39010.1| surface presentation of antigens protein [Burkholderia pseudomallei
           K96243]
 gi|52422432|gb|AAU46002.1| type III secretion system protein BsaW [Burkholderia mallei ATCC
           23344]
 gi|76584193|gb|ABA53667.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 1710b]
 gi|126222135|gb|ABN85640.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 668]
 gi|126231867|gb|ABN95280.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 1106a]
 gi|126240286|gb|ABO03398.1| type III secretion system protein BsaW [Burkholderia mallei NCTC
           10247]
 gi|147748604|gb|EDK55679.1| type III secretion system protein BsaW [Burkholderia mallei FMH]
 gi|147754542|gb|EDK61606.1| type III secretion system protein BsaW [Burkholderia mallei JHU]
 gi|148028262|gb|EDK86222.1| type III secretion system protein BsaW [Burkholderia mallei
           2002721280]
 gi|157811160|gb|EDO88330.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 406e]
 gi|157934540|gb|EDO90210.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|160697291|gb|EDP87261.1| type III secretion system protein BsaW [Burkholderia mallei ATCC
           10399]
 gi|169650515|gb|EDS83208.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei S13]
 gi|217391816|gb|EEC31843.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 576]
 gi|225931964|gb|EEH27965.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei Pakistan 9]
 gi|235002165|gb|EEP51589.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei MSHR346]
 gi|238522377|gb|EEP85822.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia mallei GB8 horse 4]
 gi|242137114|gb|EES23517.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 1106b]
 gi|243060411|gb|EES42597.1| type III secretion system protein BsaW [Burkholderia mallei PRL-20]
 gi|254216441|gb|EET05826.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 1710a]
 gi|261826900|gb|ABM99812.2| type III secretion system protein BsaW [Burkholderia mallei NCTC
           10229]
          Length = 226

 Score =  152 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 56/217 (25%), Positives = 116/217 (53%), Gaps = 10/217 (4%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +    + T  ++ P ++   +CF +F IV  ++R  +G+  VP NL + S+AL M+ +VM
Sbjct: 6   IALIVLLTAATLVPFVVAAGSCFIKFSIVLVLVRNALGIQQVPSNLALNSIALIMSLFVM 65

Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
            P    +        ++  +  +    I      +  ++   +  + +  F     +  +
Sbjct: 66  MPVAQSAYRYLQHHPLDVMSGASVNEFIDGGLGDYKRYLTRYSDPELVRFFERAQTARLK 125

Query: 158 NTDITKND--------HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
             D    D              L+P++ ++E++ +F+IGF + LPFL++DM+V+++++A+
Sbjct: 126 GDDADAADADDAPDGLDNSLFSLLPAYALTEIKSAFKIGFYLYLPFLVVDMVVSSVLLAL 185

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           GMMM+ P +IS+P K+I FV +DGW+L+ + L++ ++
Sbjct: 186 GMMMMSPVTISVPIKLILFVAMDGWTLICKGLIEQYL 222


>gi|9663098|emb|CAC01112.1| FliP flagellar protein [Helicobacter pylori]
          Length = 160

 Score =  152 bits (383), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 68/161 (42%), Positives = 107/161 (66%), Gaps = 4/161 (2%)

Query: 39  IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
            +    + T+L +AP L++++T F R I+VFS LRT +G    PP  +++SL+L +TF++
Sbjct: 4   TLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFI 63

Query: 99  MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
           M P+L ++ + GI+P M+ +I+   A ++ A PF  FM  NTREKDL+LF  + +  +  
Sbjct: 64  MEPSLKKAYDTGIKPYMDKKISYIEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPK 123

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIID 199
           T     D +   +LIP+FMISEL+ +F+IGFL+ LPFL+ID
Sbjct: 124 T----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVID 160


>gi|167566198|ref|ZP_02359114.1| surface presentation of antigens protein SpaP [Burkholderia
           oklahomensis EO147]
          Length = 229

 Score =  151 bits (382), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 57/220 (25%), Positives = 116/220 (52%), Gaps = 13/220 (5%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +    + T  ++ P ++   +CF +F IV  ++R  +G+  VP NL + S+AL M+ +VM
Sbjct: 6   IALIVLLTAATLVPFVVAAGSCFIKFSIVLVLVRNALGIQQVPSNLALNSIALIMSLFVM 65

Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
            P    +        ++  N  +    I      +  ++   +  + +  F     +  +
Sbjct: 66  MPVAQSAYRYLQHHPLDVMNGTSVNDFIDGGLGDYKRYLTRYSDPELVRFFERAQAARLK 125

Query: 158 NTDITKND-----------HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
             D    D                 L+P++ ++E++ +F+IGF + LPFL++DM+V++++
Sbjct: 126 GDDADAADADVAGDEPDGFDNSLFTLLPAYALTEIKSAFKIGFYLYLPFLVVDMVVSSVL 185

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +A+GMMM+ P +IS+P K+I FV +DGW+L+ + L++ ++
Sbjct: 186 LALGMMMMSPVTISVPIKLILFVAMDGWTLISKGLIEQYL 225


>gi|188534810|ref|YP_001908607.1| surface presentation of antigens protein SpaP [Erwinia tasmaniensis
           Et1/99]
 gi|188029852|emb|CAO97733.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99]
          Length = 223

 Score =  151 bits (382), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 56/212 (26%), Positives = 113/212 (53%), Gaps = 6/212 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +    + +  ++ P L+   TCF +F IV  ++R  +G+  VP  L +  +AL +T +VM
Sbjct: 6   ISLIALLSFFTLLPFLIAGGTCFIKFSIVMVMVRNALGIQQVPSTLTLNGIALILTAFVM 65

Query: 100 SPTLDRS--IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
            P   +            NN  +    + +    +  ++ + +  + +  F  +      
Sbjct: 66  MPVCQKVSGYIESHHIDFNNSASINQLMDQGLGSYRDYLVHYSDHELIRFFNQVQQQKTG 125

Query: 158 NTDITKNDH----IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
            T     +H    +    L+P++ +SE++ +F+I F + +PF++IDM+V++I++A+GMMM
Sbjct: 126 ETIPEVEEHELRSLSLITLMPAYALSEIQSAFKIAFYLYVPFVVIDMVVSSILLALGMMM 185

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           + P +IS+P K+I FV ++GWSLL + ++  +
Sbjct: 186 MSPVTISIPIKLILFVSMNGWSLLTKGMIAQY 217


>gi|91782703|ref|YP_557909.1| type III secretion system protein [Burkholderia xenovorans LB400]
 gi|91686657|gb|ABE29857.1| Putative type III secretion protein, YscR-like protein
           [Burkholderia xenovorans LB400]
          Length = 211

 Score =  151 bits (382), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 70/206 (33%), Positives = 115/206 (55%), Gaps = 4/206 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           ++   +F +L + P+ + M T F +F IV ++LR+ +G+   P NLVI  +AL  T  VM
Sbjct: 8   LQNISLFFMLGLLPLAVAMTTSFTKFSIVLTLLRSALGVQQAPSNLVISGMALAATLVVM 67

Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
           +PTL +  E  +          T  +Q V  P   FM  ++R ++    +  A       
Sbjct: 68  APTLSKI-EAALDTGDGAMPRPTELVQAVRGPLGEFMLKHSRLEERQFLVSAAKRIDPEH 126

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
           +    D    ++LIP+F+ISE+   FE GFL+ + FL++D++VA ++ AMGMMML P+++
Sbjct: 127 EAHDTD---LQLLIPAFLISEISSGFEAGFLLYIAFLVVDLVVANVLSAMGMMMLSPSTV 183

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSF 245
           S+P K+  FV   G S L+  L+ S+
Sbjct: 184 SIPLKLFIFVSASGMSKLMHGLIVSY 209


>gi|254185167|ref|ZP_04891756.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 1655]
 gi|184215759|gb|EDU12740.1| type III secretion apparatus protein, YscR/HrcR family
           [Burkholderia pseudomallei 1655]
          Length = 226

 Score =  151 bits (381), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 56/217 (25%), Positives = 116/217 (53%), Gaps = 10/217 (4%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +    + T  ++ P ++   +CF +F IV  ++R  +G+  VP NL + S+AL M+ +VM
Sbjct: 6   IALIVLLTAATLVPFVVAAGSCFIKFSIVLVLVRNALGIQQVPSNLALNSIALIMSLFVM 65

Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
            P    +        ++  +  +    I      +  ++   +  + +  F     +  +
Sbjct: 66  MPIAQSAYRYLQHHPLDVMSGASVNEFIDGGLGDYKRYLARYSDPELVRFFERAQTARLK 125

Query: 158 NTDITKND--------HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
             D    D              L+P++ ++E++ +F+IGF + LPFL++DM+V+++++A+
Sbjct: 126 GDDADAADADDAPDGLDNSLFSLLPAYALTEIKSAFKIGFYLYLPFLVVDMVVSSVLLAL 185

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           GMMM+ P +IS+P K+I FV +DGW+L+ + L++ ++
Sbjct: 186 GMMMMSPVTISVPIKLILFVAMDGWTLICKGLIEQYL 222


>gi|15042142|gb|AAK81923.1|AF292566_7 RscR [Pseudomonas fluorescens]
          Length = 217

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 66/209 (31%), Positives = 117/209 (55%), Gaps = 2/209 (0%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +        LS+ P+LL++ T F + +IV  I R  +G+  VPP++ I  +AL  T ++M
Sbjct: 9   LVLAVFLAALSLMPMLLVVCTAFLKIVIVLMITRNAIGVQQVPPSMAINGIALATTLFIM 68

Query: 100 SPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
           +P      E    +   ++N  T         +P   FM  N   + L+  ++       
Sbjct: 69  APVGYEIAESVKALPLDLSNVQTLLQTANEAIKPLRAFMLRNIDPEVLTHLLENTARLWP 128

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
                +    +  +LIP+F++S+L+  FEIGFLI +PF++ID+IV+ +++A+GM M+ P 
Sbjct: 129 AQMAQEVQREDLILLIPAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPM 188

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +ISLP K++ FV++ GWS L+++L  S++
Sbjct: 189 TISLPLKLLLFVMVSGWSRLLDSLFLSYL 217


>gi|229588261|ref|YP_002870380.1| type III secretion system protein [Pseudomonas fluorescens SBW25]
 gi|229360127|emb|CAY46984.1| putative hairpin type III secretion protein [Pseudomonas
           fluorescens SBW25]
          Length = 217

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 66/209 (31%), Positives = 116/209 (55%), Gaps = 2/209 (0%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +        LS+ P+LL++ T F + +IV  I R  +G+  VPP++ I  +AL  T ++M
Sbjct: 9   LVLAVFLAALSLMPMLLVVCTAFLKIVIVLMITRNAIGVQQVPPSMAINGIALATTLFIM 68

Query: 100 SPTLDRSIEM--GIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
           +P      E    +   ++N  T         +P   FM  N     L+  ++       
Sbjct: 69  APVGYEIAESVKALPLDLSNVQTLLQTANEAIKPLRAFMLRNIDPDVLTHLLENTARLWP 128

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
                +    +  +LIP+F++S+L+  FEIGFLI +PF++ID+IV+ +++A+GM M+ P 
Sbjct: 129 AQMAQEVQREDLILLIPAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPM 188

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +ISLP K++ FV++ GWS L+++L  S++
Sbjct: 189 TISLPLKLLLFVMVSGWSRLLDSLFLSYL 217


>gi|110632472|ref|YP_672680.1| type III secretion system protein [Mesorhizobium sp. BNC1]
 gi|110283456|gb|ABG61515.1| Yop virulence translocation R [Chelativorans sp. BNC1]
          Length = 220

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 77/209 (36%), Positives = 118/209 (56%), Gaps = 2/209 (0%)

Query: 39  IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYV 98
           I+ T      LS  P +++M T F +  IV  +LR  +G+   P  LVI S+AL +T +V
Sbjct: 10  ILPTIIAVMALSFIPFIVVMGTAFTKISIVLMLLRNAIGVQQAPSGLVINSIALTLTVFV 69

Query: 99  MSPTLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSH 156
           M P  +  I    Q  +     E  +     V+E F  +++  +  ++L  FMD A    
Sbjct: 70  MVPVGNAIITQVQQQQLGFTGWENVSQLYSVVSEAFTGYLKQFSSPRELQFFMDAARKMW 129

Query: 157 RNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPP 216
             T   +       IL+P+ + SEL R+F+I FLI LPF+++DM+V+ I++AMG MM+PP
Sbjct: 130 PETLHGQITTDNVFILLPAHVTSELTRAFQIAFLIFLPFVVVDMVVSNILLAMGAMMVPP 189

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSF 245
             +SLP K++ FV  DGW+LL+ NLV S+
Sbjct: 190 MLVSLPIKILLFVAADGWALLLHNLVLSY 218


>gi|292487271|ref|YP_003530143.1| surface presentation of antigens protein SpaP [Erwinia amylovora
           CFBP1430]
 gi|292900357|ref|YP_003539726.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291200205|emb|CBJ47333.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291552690|emb|CBA19735.1| Surface presentation of antigens protein SpaP [Erwinia amylovora
           CFBP1430]
 gi|312171379|emb|CBX79638.1| Surface presentation of antigens protein SpaP [Erwinia amylovora
           ATCC BAA-2158]
          Length = 223

 Score =  150 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 56/212 (26%), Positives = 114/212 (53%), Gaps = 6/212 (2%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +    + +  ++ P ++   TCF +F IV  ++R  +G+  VP  L +  +AL MT +VM
Sbjct: 6   ISLIALLSFFTLLPFIIAGGTCFIKFSIVMVMVRNALGIQQVPSTLTLNGIALIMTAFVM 65

Query: 100 SPTLDRS--IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM----AH 153
            P   +            NN  + T  + +    +  ++   +  + +  F  +    A 
Sbjct: 66  MPICQKISSYVETNHIDFNNSASVTQLMDQGLGGYRDYLVRYSDHELIRYFNKIQQQQAG 125

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
            S    +  +   +    L+P++ +SE++ +F+I F + +PF++ID++V++I++A+GMMM
Sbjct: 126 ESAPEVEEHQLSSLSLMTLMPAYALSEIQSAFKIAFYLYVPFVVIDLVVSSILLALGMMM 185

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           + P +IS+P K+I FV ++GWSLL + ++  +
Sbjct: 186 MSPVTISIPIKLILFVAMNGWSLLTKGMIAQY 217


>gi|284007398|emb|CBA72807.1| type III secretion system protein Spap [Arsenophonus nasoniae]
          Length = 220

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 55/211 (26%), Positives = 119/211 (56%), Gaps = 4/211 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +    +    ++ P ++   TC+ +F IVF + R  +G+  +P N+V+  +AL ++F+V+
Sbjct: 5   ISLITLLAFSTLLPFIIATGTCYIKFSIVFIMARNALGLQQIPSNMVLNGIALMLSFFVL 64

Query: 100 SPTLDRSIEMGIQPLMNNQI--TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
            P +  S +   +  ++ +   +   ++      +  ++   + +  +S F  +   S  
Sbjct: 65  LPIVKTSYQEFNKVNIDYKDIDSIINSVNSGLSGYKNYLIKYSDKDLVSFFDKLHQKSDD 124

Query: 158 NTD--ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
             D      +      L+P++ +SE++ +F IGF + LPF++ID+++++I++++GMMM+ 
Sbjct: 125 GNDNQYENGNDSSIVSLLPAYALSEIKNAFTIGFYLYLPFVVIDLLISSILLSLGMMMMS 184

Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           P +IS+P K+I F+ +DGWSLL + L+  +I
Sbjct: 185 PVTISVPIKLILFICLDGWSLLSKGLITQYI 215


>gi|8996030|gb|AAF82329.1|AF005744_8 YsaR [Yersinia enterocolitica]
          Length = 224

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 54/211 (25%), Positives = 106/211 (50%), Gaps = 4/211 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +    I    S+ P ++   TC+   I   +      G  +    L +  +AL ++ +VM
Sbjct: 9   IPLLAIVAFSSLLPFVIAAGTCYLENINRANYGAQCDGGTTGTFRLALNGIALLLSLFVM 68

Query: 100 SPTLDRSIEMG--IQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
            P +          +   +N  +    I      +  +++  +  + L+ F  +      
Sbjct: 69  MPVIQDVNHYMRTEKVDFSNVDSVDKFIDGGLGSYTAYLKKYSDPELLNFFESLQQGRSE 128

Query: 158 NTDITKND--HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
              + + D        L+P++ +SE++ +FEIGF I LPF++ID+I+++I++A+GMMM+ 
Sbjct: 129 EESMAEADTREPALFSLLPAYALSEIKSAFEIGFYIYLPFVVIDLIISSILLALGMMMMS 188

Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           P +IS+P K+I FV IDGW+L+ + L+  ++
Sbjct: 189 PVTISVPVKLILFVAIDGWALISKGLIMQYM 219


>gi|149926086|ref|ZP_01914349.1| Yop virulence translocation protein R [Limnobacter sp. MED105]
 gi|149825374|gb|EDM84585.1| Yop virulence translocation protein R [Limnobacter sp. MED105]
          Length = 217

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 64/215 (29%), Positives = 116/215 (53%), Gaps = 6/215 (2%)

Query: 36  STWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMT 95
           S   +        LS+ P++ +  T F +   V  ILR  +G+  VP N+V+  +++ MT
Sbjct: 4   SINPIGLIVTIASLSVLPLVAVTATSFLKISAVLLILRNAIGVQQVPSNMVLYGISMVMT 63

Query: 96  FYVMSPTLDRSIE----MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
             VM   L  + +     G  P+   ++    +I     PF  FM  N     L+ F + 
Sbjct: 64  LLVMGSILTEAGQRFAPDGKMPVSGTEV--LESINASVPPFKKFMLANVNPGYLNSFHET 121

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           A    +  D  + +  +  +++P+F+ SEL  +F IG  + LPF+IID+ V++ +MA+GM
Sbjct: 122 AQKFQKKYDAPEVEKTDLFVVLPAFVASELAEAFRIGLYLYLPFVIIDLAVSSALMALGM 181

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           MM+ P S+++P K++ FV ++GW+ +++ LV S++
Sbjct: 182 MMVSPMSLTVPAKIVLFVAVEGWAKVLQGLVNSYL 216


>gi|15645308|ref|NP_207479.1| flagellar biosynthesis protein FliP [Helicobacter pylori 26695]
 gi|4580427|gb|AAD14890.2| flagellar biosynthetic protein (fliP) [Helicobacter pylori 26695]
          Length = 153

 Score =  148 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 78/154 (50%), Positives = 115/154 (74%), Gaps = 4/154 (2%)

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           + +TF++M P+L ++ + GI+P M+ +I+ T A ++ A PF  FM  NTREKDL+LF  +
Sbjct: 1   MILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFMLKNTREKDLALFFRI 60

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
            +  +  T     D +   +LIP+FMISEL+ +F+IGFL+ LPFL+IDM++++I+MAMGM
Sbjct: 61  RNLPNPKT----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVIDMVISSILMAMGM 116

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MMLPP  ISLPFK++ F+L+DG++LL ENLV SF
Sbjct: 117 MMLPPVMISLPFKILVFILVDGFNLLTENLVASF 150


>gi|186976183|gb|ACD01065.1| EpaP [Escherichia coli O157:H7 str. EC10]
          Length = 221

 Score =  148 bits (375), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 62/213 (29%), Positives = 122/213 (57%), Gaps = 4/213 (1%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           +  +    I ++ ++ P ++   TCF +F IVF I+R  +G+  VP N+ +  +AL ++ 
Sbjct: 2   SNSISLIAILSLFTLLPFIIASGTCFIKFSIVFVIVRNALGLQQVPSNMTLNGVALLLSM 61

Query: 97  YVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA-- 152
           +VM P             +  NN  +    ++     +  ++R  +  + +S F  +   
Sbjct: 62  FVMMPVGKEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLRKYSEPELVSFFEKIQKV 121

Query: 153 HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMM 212
           +SS  N DI  +D+I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMM
Sbjct: 122 NSSEDNEDIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMM 181

Query: 213 MLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           M+ P +IS P K+I FV +DGW++L + L+  +
Sbjct: 182 MMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 214


>gi|9663090|emb|CAC01108.1| FliP flagellar protein [Helicobacter pylori]
          Length = 160

 Score =  148 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 66/147 (44%), Positives = 101/147 (68%), Gaps = 4/147 (2%)

Query: 53  PILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112
           P L++++T F R I+VFS LRT +G    PP  +++SL+L +TF++M P+L ++ + GI+
Sbjct: 18  PSLILVMTSFTRLIVVFSFLRTALGTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIK 77

Query: 113 PLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRIL 172
           P M+ +I+ T A ++ A PF  FM  NTREKDL+LF  + +  +  T     D +   +L
Sbjct: 78  PYMDKKISYTEAFEKSALPFKEFMLKNTREKDLALFFRIRNLPNPKT----PDEVSLSVL 133

Query: 173 IPSFMISELRRSFEIGFLIILPFLIID 199
           IP+FMISEL+ +F+IGFL+ LPFL+ID
Sbjct: 134 IPAFMISELKTAFQIGFLLYLPFLVID 160


>gi|167576640|ref|ZP_02369514.1| flagellar biosynthesis protein FliP [Burkholderia thailandensis
           TXDOH]
          Length = 255

 Score =  148 bits (374), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 84/232 (36%), Positives = 127/232 (54%), Gaps = 7/232 (3%)

Query: 13  TPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSIL 72
           TP L        + + +  D S+ T   +     T+L + P L I++T F RF IV ++L
Sbjct: 27  TPALAEPLELPLESLGLRGDYSVKT---QILLFMTLLGLLPALAIVMTSFLRFAIVLALL 83

Query: 73  RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPF 132
           R  +G+    P  VI ++AL +T  VM P         I+P   ++IT   AI R  +P 
Sbjct: 84  RQALGLQQGLPARVITAVALLLTLLVMRPVGLDVWRHAIEPYDRDEITFREAIARAEKPI 143

Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192
             FM   T +  L+    ++       D+ K +   + +   +FM+SEL+ +F+IG ++ 
Sbjct: 144 SRFMLAQTSKASLAQISRLSG----ERDVAKPEDHAFVVKAAAFMMSELKTAFQIGAMLF 199

Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           LPFLIID++VA+ +MAMGMMML P  ISLP K++ FVL+DGW+L V  L  S
Sbjct: 200 LPFLIIDLVVASTLMAMGMMMLSPLVISLPLKLLLFVLVDGWTLTVNTLTTS 251


>gi|284007673|emb|CBA73393.1| type III secretion sytem SpaP,YscR,HrcR,EscR [Arsenophonus
           nasoniae]
          Length = 226

 Score =  148 bits (373), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 56/220 (25%), Positives = 120/220 (54%), Gaps = 8/220 (3%)

Query: 35  ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFM 94
           ++   V    + +I ++ P L+   TC+ +F IVF ++R  +G+  VP N+V+ ++AL +
Sbjct: 1   MTDNPVSIIILLSIATLLPFLIAAGTCYLKFSIVFVMVRNAIGVQQVPSNMVLNAIALIL 60

Query: 95  TFYVMSPTLDRSIEMGIQPLMNNQ------ITETTAIQRVAEPFWVFMRNNTREKDLSLF 148
           + ++M+P         +     N       I     +    + +  ++      + ++ F
Sbjct: 61  SLFIMAPLAKNFYLYSVNYQTENPHGFTDPILLDQFLDESLQDYRQYLHKYADPELVNFF 120

Query: 149 MDMAHSSHRNTDITKN--DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
           +       +  +   N  ++     L+ ++ +SE++ +F IGF + LPF++ID++V++I+
Sbjct: 121 VAAQERVPQPENQIDNSMENGSLIPLLAAYALSEIKSAFIIGFYLYLPFVVIDLVVSSIL 180

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +A+GMMM+ P ++S+P K++ FV +DGWSLL + L+  ++
Sbjct: 181 LALGMMMMSPITLSVPIKLVLFVAMDGWSLLSKGLISQYL 220


>gi|187919910|ref|YP_001888941.1| type III secretion system protein [Burkholderia phytofirmans PsJN]
 gi|187718348|gb|ACD19571.1| Yop virulence translocation R [Burkholderia phytofirmans PsJN]
          Length = 215

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 70/208 (33%), Positives = 116/208 (55%), Gaps = 6/208 (2%)

Query: 41  RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100
           +    F +L + P+++ M T F +F IV ++LR+ +G+   P N+ I +LAL  T  VM+
Sbjct: 9   QIIVFFFVLGLLPLIVTMTTSFTKFSIVLTLLRSAVGVQQAPGNMAISALALAATLVVMA 68

Query: 101 PTLDRS---IEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
           PT+++    + +G +         T   Q V  P   FM  ++R  + +  +  A     
Sbjct: 69  PTMEKIGGDLSLGERVERGQFPDVTEVYQAVRGPLGEFMMEHSRPSERAFLVTAAKRIDP 128

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
             D  + D   + +LIP+FMISE+   FE GFL+ + FLIID+++A ++ AMGM+ML PT
Sbjct: 129 ARDAQETD---FSLLIPAFMISEISSGFEAGFLLYMAFLIIDLVIANVLTAMGMVMLSPT 185

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSF 245
           ++S P K+   V + G S L+  L+ S+
Sbjct: 186 TVSTPLKLFVLVSVSGISKLMHGLIVSY 213


>gi|167840168|ref|ZP_02466852.1| surface presentation of antigens protein SpaP [Burkholderia
           thailandensis MSMB43]
          Length = 229

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 56/220 (25%), Positives = 115/220 (52%), Gaps = 13/220 (5%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +    +    ++ P ++   +CF +F IV  ++R  +G+  VP NL + S+AL M+ +VM
Sbjct: 6   IALIVLLAAATLVPFVVAAGSCFIKFSIVLVLVRNALGIQQVPSNLALNSIALIMSLFVM 65

Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
            P    +        ++  N  +    I      +  ++   +    +  F     +  +
Sbjct: 66  MPVAQSAYRYLQHHPLDVMNGASVNDFIDGGLGGYKRYLTRYSDPALVRFFERAQAARLK 125

Query: 158 NTDITKND-----------HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
           + D    D                 L+P++ ++E++ +F+IGF + LPFL++DM+V++++
Sbjct: 126 SDDADAADADVAGDGPDGLDNSLFSLLPAYALTEIKSAFKIGFYLYLPFLVVDMVVSSVL 185

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +A+GMMM+ P +IS+P K+I FV +DGW+L+ + L++ ++
Sbjct: 186 LALGMMMMSPVTISVPIKLILFVAMDGWTLICKGLIEQYL 225


>gi|83716894|ref|YP_438369.1| flagellar biosynthesis protein FliP [Burkholderia thailandensis
           E264]
 gi|167614815|ref|ZP_02383450.1| flagellar biosynthesis protein FliP [Burkholderia thailandensis
           Bt4]
 gi|257141400|ref|ZP_05589662.1| flagellar biosynthesis protein FliP [Burkholderia thailandensis
           E264]
 gi|83650719|gb|ABC34783.1| flagellar biosynthetic protein fliP [Burkholderia thailandensis
           E264]
          Length = 255

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 78/204 (38%), Positives = 116/204 (56%), Gaps = 4/204 (1%)

Query: 41  RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100
           +     T+L + P L I++T F RF IV ++LR  +G+    P  VI ++AL +T  VM 
Sbjct: 52  QILLFMTLLGLLPALAIVMTSFLRFAIVLALLRQALGLQQGLPARVITAVALLLTLLVMR 111

Query: 101 PTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTD 160
           P         I+P   ++IT   AI R  +P   FM   T +  L     ++       D
Sbjct: 112 PVGLDVWRHAIEPYDRDEITFREAIARAEKPLSRFMLAQTSKASLEQISRLSG----ERD 167

Query: 161 ITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
           + K +   + +   +FM+SEL+ +F+IG ++ LPFLIID++VA+ +MAMGMMML P  IS
Sbjct: 168 VAKPEDHAFVVKAAAFMMSELKTAFQIGAMLFLPFLIIDLVVASTLMAMGMMMLSPLVIS 227

Query: 221 LPFKVIFFVLIDGWSLLVENLVKS 244
           LP K++ FVL+DGW+L V  L  S
Sbjct: 228 LPLKLLLFVLVDGWTLTVNTLTTS 251


>gi|51103054|gb|AAT96200.1| HrcR [Pseudomonas viridiflava]
          Length = 217

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 70/212 (33%), Positives = 116/212 (54%), Gaps = 2/212 (0%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           T  +        LS+ P LLI+ T F +  +   I R  +G+  VPPN+ +  +AL  T 
Sbjct: 6   TNPIMLALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATM 65

Query: 97  YVMSPTLDRSIEM-GIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
           +VM+P      +     PL      +  A ++ V EP   FM  NT    ++  ++    
Sbjct: 66  FVMAPVAHDIQQRVHDHPLELGSADKLQASLRTVIEPLQRFMTRNTDPDVVAHLLENTQR 125

Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
                   +    +  + IP+F++SEL+  FEIGFLI +PF++ID+IV+ +++A+GM M+
Sbjct: 126 MWPKEMADQATKDDLLLAIPAFVMSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMV 185

Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
            P +ISLP K++ FVL+ GWS L+++L  S++
Sbjct: 186 SPMTISLPLKLLLFVLVSGWSRLLDSLFYSYM 217


>gi|162533077|ref|NP_791222.3| type III secretion protein HrcR [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213968264|ref|ZP_03396408.1| type III secretion protein HrcR [Pseudomonas syringae pv. tomato
           T1]
 gi|28851841|gb|AAO54917.1| type III secretion protein HrcR [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213926902|gb|EEB60453.1| type III secretion protein HrcR [Pseudomonas syringae pv. tomato
           T1]
          Length = 200

 Score =  147 bits (371), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 67/200 (33%), Positives = 112/200 (56%), Gaps = 2/200 (1%)

Query: 49  LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108
           +S+ P LLI+ T F +  +   I R  +G+  VPPN+ +  +AL  T +VM+P      +
Sbjct: 1   MSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAPVAHEMQQ 60

Query: 109 M-GIQPLMNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
                PL      +  A  R   EP   FM  NT    ++  +D            +   
Sbjct: 61  RVHDHPLELGNTEKLQASARTVIEPLQRFMTRNTDPDVVAHLLDNTQRMWPKEMADQASK 120

Query: 167 IEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVI 226
            +  + IP+F++SEL+  FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP K++
Sbjct: 121 NDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTLSLPLKLL 180

Query: 227 FFVLIDGWSLLVENLVKSFI 246
            FV++ GWS L+++L  S++
Sbjct: 181 LFVMVSGWSRLLDSLFYSYM 200


>gi|51102999|gb|AAT96146.1| HrcR [Pseudomonas viridiflava]
          Length = 217

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 68/212 (32%), Positives = 116/212 (54%), Gaps = 2/212 (0%)

Query: 37  TWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96
           T  +        LS+ P LLI+ T F +  +   I R  +G+  VPPN+ +  +AL  T 
Sbjct: 6   TNPIMLALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATM 65

Query: 97  YVMSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
           +VM+P      +      +   +     T+++ V EP   FM  NT    ++  ++    
Sbjct: 66  FVMAPVAHDIQQRVHDHPLELGSADKLQTSLRTVIEPLQRFMTRNTDPDVVAHLLENTQR 125

Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
                   +    +  + IP+F++SEL+  FEIGFLI +PF++ID+IV+ +++A+GM M+
Sbjct: 126 MWPKEMADQATKDDLLLAIPAFVMSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMV 185

Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
            P +ISLP K++ FVL+ GWS L+++L  S++
Sbjct: 186 SPMTISLPLKLLLFVLVSGWSRLLDSLFYSYM 217


>gi|301381807|ref|ZP_07230225.1| type III secretion system protein [Pseudomonas syringae pv. tomato
           Max13]
 gi|302061998|ref|ZP_07253539.1| type III secretion system protein [Pseudomonas syringae pv. tomato
           K40]
 gi|302135080|ref|ZP_07261070.1| type III secretion system protein [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|330872918|gb|EGH07067.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330963055|gb|EGH63315.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           actinidiae str. M302091]
 gi|331015103|gb|EGH95159.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 217

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 65/209 (31%), Positives = 113/209 (54%), Gaps = 2/209 (0%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +        +S+ P LLI+ T F +  +   I R  +G+  VPPN+ +  +AL  T +VM
Sbjct: 9   LLLALFLGAMSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVM 68

Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
           +P      +      +   N      + + V EP   FM  NT    ++  +D       
Sbjct: 69  APVAHEMQQRVHDHPLELGNTEKLQASARTVIEPLQRFMTRNTDPDVVAHLLDNTQRMWP 128

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
                +    +  + IP+F++SEL+  FEIGFLI +PF++ID+IV+ +++A+GM M+ P 
Sbjct: 129 KEMADQASKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPM 188

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           ++SLP K++ FV++ GWS L+++L  S++
Sbjct: 189 TLSLPLKLLLFVMVSGWSRLLDSLFYSYM 217


>gi|11276516|gb|AAG33884.1| HrcR [Pseudomonas syringae pv. tomato]
          Length = 208

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 65/207 (31%), Positives = 112/207 (54%), Gaps = 2/207 (0%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
                  +S+ P LLI+ T F +  +   I R  +G+  VPPN+ +  +AL  T +VM+P
Sbjct: 2   LALFLGAMSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAP 61

Query: 102 TLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
                 +      +   N      + + V EP   FM  NT    ++  +D         
Sbjct: 62  VAHEMQQRVHDHPLELGNTEKLQASARTVIEPLQRFMTRNTDPDVVAHLLDNTQRMWPKE 121

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
              +    +  + IP+F++SEL+  FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++
Sbjct: 122 MADQASKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTL 181

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
           SLP K++ FV++ GWS L+++L  S++
Sbjct: 182 SLPLKLLLFVMVSGWSRLLDSLFYSYM 208


>gi|161611342|ref|YP_273544.2| type III secretion system protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 215

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 65/209 (31%), Positives = 117/209 (55%), Gaps = 2/209 (0%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +        LS+ P LLI+ T F +  +   I R  +G+  VPPN+ +  +AL  T +VM
Sbjct: 7   IMLALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVM 66

Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
           +P      +   +  +   +     ++++ V EP   FM  NT    ++  ++       
Sbjct: 67  APVAHEIQQRVHEHPLELGSADKLQSSLKTVIEPLQRFMTRNTDPDVVAHLLENTQRMWP 126

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
                + +  +  + IP+F++SEL+  FEIGFLI +PF++ID+IV+ +++A+GM M+ P 
Sbjct: 127 KEMADQANKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPM 186

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           ++SLP K++ FVL+ GWS L+++L  S++
Sbjct: 187 TLSLPLKLLLFVLVSGWSRLLDSLFYSYM 215


>gi|170737012|ref|YP_001778272.1| flagellar biosynthetic protein FliP [Burkholderia cenocepacia
           MC0-3]
 gi|169819200|gb|ACA93782.1| flagellar biosynthetic protein FliP [Burkholderia cenocepacia
           MC0-3]
          Length = 248

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 71/244 (29%), Positives = 129/244 (52%), Gaps = 5/244 (2%)

Query: 1   MIRYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVT 60
           ++RY   AL          ++    + +        T   +   + T+L + P LL+ +T
Sbjct: 6   LLRYLGLALAAFA-MPALVQAETLTLASDGVGGQGFTVKTQILVLMTLLGLLPALLMTMT 64

Query: 61  CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
            F R++IV S+++  +G+    P  ++  +AL +T   M P  +   +    P    +I+
Sbjct: 65  SFLRYVIVLSLVKQALGLQQGLPGRIVTGVALVLTMLTMRPVGEEIWQKAFVPYDQGKIS 124

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
             TA+    +P   +M   T +  L+    ++ +      +   +   + + + +F++SE
Sbjct: 125 MQTALATSEQPLGRYMLAQTNKATLAQMAKLSGTEK----VMDPEKQPFLVKLSAFVLSE 180

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
           L+ +F++G ++ +PFLI+D+IVA+++MAMGMMML P  ISLP K++ FVL+DGWSL V  
Sbjct: 181 LKTAFQMGAMLFIPFLIVDIIVASVLMAMGMMMLSPLVISLPLKLLLFVLVDGWSLTVNT 240

Query: 241 LVKS 244
           LV S
Sbjct: 241 LVTS 244


>gi|307944366|ref|ZP_07659707.1| type III secretion apparatus protein, YscR/HrcR family [Roseibium
           sp. TrichSKD4]
 gi|307772712|gb|EFO31932.1| type III secretion apparatus protein, YscR/HrcR family [Roseibium
           sp. TrichSKD4]
          Length = 212

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 62/208 (29%), Positives = 112/208 (53%), Gaps = 3/208 (1%)

Query: 41  RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100
           +  G+  + SI P  ++  T F +   +  ILR  +G+   PPN+ + ++ L +  ++ +
Sbjct: 6   QFLGMLILASIVPFFIVGTTAFIKIATILFILRNAIGLQQTPPNMALYAITLALVAFIQA 65

Query: 101 PTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
           P    + +    +    N+  +   A  +  +P   FM  +    D + F+D  +  ++ 
Sbjct: 66  PVFVATYDILAALPIDFNSPASLQDAFVKGLQPISDFMNKHVTLADKTFFLDAGNELYKG 125

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
           + +   ++  + +L+P+FM +EL  + + G LI LPFL ID++V  I+ A+GM M+ P  
Sbjct: 126 SRLKVTEN-SFLVLLPAFMNAELNAALQAGVLIFLPFLAIDIVVTNILSALGMSMVSPMV 184

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           ISLPFKV+ FV  DGWS L  +L+ S+I
Sbjct: 185 ISLPFKVLLFVAADGWSKLTHSLILSYI 212


>gi|227114168|ref|ZP_03827824.1| type III secretion system protein [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
 gi|253688597|ref|YP_003017787.1| Yop virulence translocation R [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251755175|gb|ACT13251.1| Yop virulence translocation R [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 217

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 70/215 (32%), Positives = 121/215 (56%), Gaps = 2/215 (0%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           S +   +        LS+ P+++I+ TCF +  IV  I R  +G+  VPPN+ +  +AL 
Sbjct: 3   SGAFDPLMFALFLGALSLIPLMMIVCTCFLKIAIVLLITRNAIGVQQVPPNMALYGIALA 62

Query: 94  MTFYVMSPTLDRS-IEMGIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDM 151
            T +VM+P        +  +PL    IT   A +    EP   FM  N     L+   + 
Sbjct: 63  ATLFVMAPVFQDISKRVQEKPLDMTDITSLQASVTYGLEPLQTFMSRNVDPDILTHLHEN 122

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           +      +   K +     ++IP+F++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM
Sbjct: 123 SLQMWPASLSEKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGM 182

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
            M+ P ++SLP K++ FVL++GW+ L++ L  S++
Sbjct: 183 QMVAPMTLSLPLKLLLFVLVNGWTRLLDGLFYSYL 217


>gi|146305087|ref|YP_001185552.1| type III secretion system protein [Pseudomonas mendocina ymp]
 gi|145573288|gb|ABP82820.1| Yop virulence translocation R [Pseudomonas mendocina ymp]
          Length = 217

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 69/209 (33%), Positives = 117/209 (55%), Gaps = 2/209 (0%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +        LS+ P LLI+ T F +  +   I R  +G+  VPPN+ I  +AL  T +VM
Sbjct: 9   IMLALFLGALSLIPFLLIVCTAFLKIAMTLMITRNAIGVQQVPPNMAIYGIALAATMFVM 68

Query: 100 SPTLDRS-IEMGIQPL-MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
           +P        +   PL +++  +   +   V EP   FM NNT     +  ++       
Sbjct: 69  APVAYEIQNRLSDNPLDLSSTDSLQASAGNVVEPLQDFMVNNTDPDIATHLLENTQRMWP 128

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
                K    +  + IP+F++SEL+ +F+IGFLI +PF++ID+I++ +++A+GM M+ P 
Sbjct: 129 REMSEKASKSDLLLAIPAFVLSELQAAFQIGFLIYIPFIVIDLIISNLLLALGMQMVSPM 188

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +ISLP K++ FVL+DGW+ L+ +L  S++
Sbjct: 189 TISLPLKLLLFVLVDGWTRLLNSLFYSYM 217


>gi|251789493|ref|YP_003004214.1| type III secretion system protein [Dickeya zeae Ech1591]
 gi|247538114|gb|ACT06735.1| Yop virulence translocation R [Dickeya zeae Ech1591]
          Length = 217

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 68/215 (31%), Positives = 119/215 (55%), Gaps = 2/215 (0%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           S S   V        LS+ P+ +I+ TCF +  +V  I R  +G+  VPPN+ +  +AL 
Sbjct: 3   SGSFDPVMFALFLGTLSLIPLSMIVCTCFLKISMVLMITRNAIGVQQVPPNMALYGIALA 62

Query: 94  MTFYVMSPTLDRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
            T +VM+P      +         +N     +++ R  EP   FM  NT    L+   + 
Sbjct: 63  ATVFVMAPVFSDIKQRFQDAPVDFSNLDALESSVTRGIEPLQKFMSRNTDPDILTHLHEN 122

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           +          K       +++P++++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM
Sbjct: 123 SLRMWPAAMSEKITTQSILLIVPAYVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGM 182

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
            M+ PT++SLP K++ FVL++GW+ L++ L  S++
Sbjct: 183 QMVAPTTLSLPLKLLLFVLVNGWTRLLDGLFYSYL 217


>gi|331653360|ref|ZP_08354365.1| flagellar biosynthetic protein FliP [Escherichia coli M718]
 gi|331049458|gb|EGI21530.1| flagellar biosynthetic protein FliP [Escherichia coli M718]
          Length = 145

 Score =  145 bits (366), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 64/147 (43%), Positives = 101/147 (68%), Gaps = 4/147 (2%)

Query: 99  MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
           MSP +D+      QP    +I+   A+++ A+P   FM   TRE DL LF  +A++    
Sbjct: 1   MSPVIDKIYVDAYQPFSEEKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTG--- 57

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
             +   + +  RIL+P+++ SEL+ +F+IGF I +PFLIID+++A+++MA+GMMM+PP +
Sbjct: 58  -PLQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPAT 116

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
           I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 117 IALPFKLMLFVLVDGWQLLVGSLAQSF 143


>gi|28628132|gb|AAO34616.1| HrcR [Erwinia chrysanthemi]
          Length = 217

 Score =  145 bits (366), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 67/215 (31%), Positives = 119/215 (55%), Gaps = 2/215 (0%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           S S   V        LS+ P+ +I+ TCF +  +V  + R  +G+  VPPN+ +  +AL 
Sbjct: 3   SGSFDPVMFALFLGTLSLIPLSMIVCTCFLKISMVLMLTRNAIGVQQVPPNMALYGIALA 62

Query: 94  MTFYVMSPTLDRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
            T +VM+P      +         +N     +++ R  EP   FM  NT    L+   + 
Sbjct: 63  ATVFVMAPVFSDIKQRFQDAPVDFSNLDALESSVTRGIEPLQKFMSRNTDPDILTHLHEN 122

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           +          K       +++P++++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM
Sbjct: 123 SLRMWPAAMSEKITTQSILLIVPAYVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGM 182

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
            M+ PT++SLP K++ FVL++GW+ L++ L  S++
Sbjct: 183 QMVAPTTLSLPLKLLLFVLVNGWTRLLDGLFYSYL 217


>gi|50121007|ref|YP_050174.1| type III secretion system protein [Pectobacterium atrosepticum
           SCRI1043]
 gi|42560424|gb|AAS20384.1| HrcR [Pectobacterium atrosepticum]
 gi|49611533|emb|CAG74981.1| type III secretion protein [Pectobacterium atrosepticum SCRI1043]
          Length = 217

 Score =  145 bits (366), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 70/215 (32%), Positives = 121/215 (56%), Gaps = 2/215 (0%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           S +   +        LS+ P+++I+ TCF +  IV  I R  +G+  VPPN+ +  +AL 
Sbjct: 3   SGAFDPLMFALFLGALSLIPLMMIVCTCFLKIAIVLLITRNAIGVQQVPPNMALYGIALA 62

Query: 94  MTFYVMSPTLDRS-IEMGIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDM 151
            T +VM+P        +  +PL    IT   A +    EP   FM  N     L+   + 
Sbjct: 63  ATMFVMAPVFQDISKRVQEKPLDMTDITSLQASVTYGLEPLQTFMSRNVDPDILTHLHEN 122

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           +      +   K +     ++IP+F++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM
Sbjct: 123 SLQMWPASLSEKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGM 182

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
            M+ P ++SLP K++ FVL++GW+ L++ L  S++
Sbjct: 183 QMVAPMTLSLPLKLLLFVLVNGWTRLLDGLFYSYL 217


>gi|3282781|gb|AAC25069.1| HrcR [Pseudomonas syringae pv. phaseolicola]
 gi|42562002|gb|AAS20444.1| HrcR [Pseudomonas syringae pv. phaseolicola]
 gi|71555436|gb|AAZ34647.1| type III secretion component protein HrcR [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 208

 Score =  145 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 65/207 (31%), Positives = 116/207 (56%), Gaps = 2/207 (0%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
                  LS+ P LLI+ T F +  +   I R  +G+  VPPN+ +  +AL  T +VM+P
Sbjct: 2   LALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAP 61

Query: 102 TLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
                 +   +  +   +     ++++ V EP   FM  NT    ++  ++         
Sbjct: 62  VAHEIQQRVHEHPLELGSADKLQSSLKTVIEPLQRFMTRNTDPDVVAHLLENTQRMWPKE 121

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
              + +  +  + IP+F++SEL+  FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++
Sbjct: 122 MADQANKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTL 181

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
           SLP K++ FVL+ GWS L+++L  S++
Sbjct: 182 SLPLKLLLFVLVSGWSRLLDSLFYSYM 208


>gi|289623683|ref|ZP_06456637.1| type III secretion system protein [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289647643|ref|ZP_06478986.1| type III secretion system protein [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|298485949|ref|ZP_07004024.1| type III secretion system inner membrane protein [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298159535|gb|EFI00581.1| type III secretion system inner membrane protein [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|320322955|gb|EFW79045.1| type III secretion system protein [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329922|gb|EFW85910.1| type III secretion system protein [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330871287|gb|EGH05996.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330874622|gb|EGH08771.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 217

 Score =  145 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 65/209 (31%), Positives = 117/209 (55%), Gaps = 2/209 (0%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +        LS+ P LLI+ T F +  +   I R  +G+  VPPN+ +  +AL  T +VM
Sbjct: 9   IMLALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVM 68

Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
           +P      +   +  +   +     ++++ V EP   FM  NT    ++  ++       
Sbjct: 69  APVAHEIQQRVHEHPLELGSADKLQSSLKTVIEPLQRFMTRNTDPDVVAHLLENTQRMWP 128

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
                + +  +  + IP+F++SEL+  FEIGFLI +PF++ID+IV+ +++A+GM M+ P 
Sbjct: 129 KEMADQANKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPM 188

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           ++SLP K++ FVL+ GWS L+++L  S++
Sbjct: 189 TLSLPLKLLLFVLVSGWSRLLDSLFYSYM 217


>gi|34500877|gb|AAQ73905.1| HrcR [Pectobacterium carotovorum subsp. carotovorum]
          Length = 217

 Score =  145 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 70/215 (32%), Positives = 122/215 (56%), Gaps = 2/215 (0%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           S +   +        LS+ P+++I+ TCF +  IV  I R  +G+  VPPN+ +  +AL 
Sbjct: 3   SGAFDPLMFALFLGALSLIPLMMIVCTCFLKIAIVLLITRNAIGVQQVPPNMALYGIALA 62

Query: 94  MTFYVMSPTLDRS-IEMGIQPLMNNQIT-ETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
            T +VM+P        +  +PL    IT   T++    EP   FM  N     L+   + 
Sbjct: 63  ATLFVMAPVFQDITKRVQEKPLDMTDITSLQTSVTYGLEPLQTFMSRNVDPDILTHLHEN 122

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           +      +   K +     ++IP+F++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM
Sbjct: 123 SLQMWPASLSEKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGM 182

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
            M+ P ++SLP K++ FVL++GW+ L++ L  S++
Sbjct: 183 QMVAPMTLSLPLKLLLFVLVNGWTRLLDGLFYSYL 217


>gi|227328491|ref|ZP_03832515.1| type III secretion system protein [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 217

 Score =  145 bits (365), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 70/215 (32%), Positives = 122/215 (56%), Gaps = 2/215 (0%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           S +   +        LS+ P+++I+ TCF +  IV  I R  +G+  VPPN+ +  +AL 
Sbjct: 3   SGAFDPLMFALFLGALSLIPLMMIVCTCFLKIAIVLLITRNAIGVQQVPPNMALYGIALA 62

Query: 94  MTFYVMSPTLDRS-IEMGIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDM 151
            T +VM+P        +  +PL    IT   A +    EP  +FM  N     L+   + 
Sbjct: 63  ATLFVMAPVFQDISKRVQEKPLDMTDITSLQASVTYGLEPLQMFMSRNVDPDILTHLHEN 122

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           +      +   K +     ++IP+F++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM
Sbjct: 123 SLQMWPASLSEKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGM 182

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
            M+ P ++SLP K++ FVL++GW+ L++ L  S++
Sbjct: 183 QMVAPMTLSLPLKLLLFVLVNGWTRLLDGLFYSYL 217


>gi|66044459|ref|YP_234300.1| type III secretion system protein [Pseudomonas syringae pv.
           syringae B728a]
 gi|63255166|gb|AAY36262.1| type III secretion protein HrcR [Pseudomonas syringae pv. syringae
           B728a]
 gi|330969104|gb|EGH69170.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 217

 Score =  144 bits (364), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 66/209 (31%), Positives = 116/209 (55%), Gaps = 2/209 (0%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +        LS+ P LLI+ T F +  +   I R  +G+  VPPN+ +  +AL  T +VM
Sbjct: 9   IMLALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVM 68

Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
           +P      +   +  +   N     ++++ V EP   FM  NT    ++  ++       
Sbjct: 69  APVAHDIQQRVHEHPLELSNADKLQSSLKVVIEPLQRFMTRNTDPDVVAHLLENTQRMWP 128

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
                +    +  + IP+F++SEL+  FEIGFLI +PF++ID+IV+ +++A+GM M+ P 
Sbjct: 129 KEMADQASKDDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPM 188

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           ++SLP K++ FVL+ GWS L+++L  S++
Sbjct: 189 TLSLPLKLLLFVLVSGWSRLLDSLFYSYM 217


>gi|2494569|sp|Q60236|HRPW_PSESY RecName: Full=Harpin secretion protein hrpW
 gi|818891|gb|AAB05075.1| HrpW [Pseudomonas syringae pv. syringae]
 gi|148562540|gb|ABQ88359.1| HrcR [Pseudomonas syringae pv. syringae]
          Length = 208

 Score =  144 bits (364), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 66/207 (31%), Positives = 116/207 (56%), Gaps = 2/207 (0%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
                  LS+ P LLI+ T F +  +   I R  +G+  VPPN+ +  +AL  T +VM+P
Sbjct: 2   LALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAP 61

Query: 102 TLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
                 +   +  +   N     ++++ V EP   FM  NT    ++  ++         
Sbjct: 62  VAHDIQQRVHEHPLELSNADKLQSSLKVVIEPLQRFMTRNTDPDVVAHLLENTQRMWPKE 121

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
              + +  +  + IP+F++SEL+  FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++
Sbjct: 122 MADQANKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTL 181

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
           SLP K++ FVL+ GWS L+++L  S++
Sbjct: 182 SLPLKLLLFVLVSGWSRLLDSLFYSYM 208


>gi|330975864|gb|EGH75930.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 217

 Score =  144 bits (364), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 66/209 (31%), Positives = 117/209 (55%), Gaps = 2/209 (0%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +        LS+ P LLI+ T F +  +   I R  +G+  VPPN+ +  +AL  T +VM
Sbjct: 9   IMLALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVM 68

Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
           +P      +   +  +   N     ++++ V EP   FM  NT    ++  ++       
Sbjct: 69  APVAHDIQQRVHEHPLELSNADKLQSSLKVVIEPLQRFMTRNTDPDVVAHLLENTQRMWP 128

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
                + +  +  + IP+F++SEL+  FEIGFLI +PF++ID+IV+ +++A+GM M+ P 
Sbjct: 129 KEMADQANKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPM 188

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           ++SLP K++ FVL+ GWS L+++L  S++
Sbjct: 189 TLSLPLKLLLFVLVSGWSRLLDSLFYSYM 217


>gi|323166471|gb|EFZ52235.1| surface presentation of antigens protein spaP [Shigella sonnei 53G]
          Length = 181

 Score =  144 bits (364), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 49/178 (27%), Positives = 106/178 (59%), Gaps = 3/178 (1%)

Query: 71  ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ-PLMNNQITETTAI-QRV 128
           ++R  +G+  VP N+ +  +AL M  +VM P ++   E  +  P   + I++        
Sbjct: 1   MVRNALGLQQVPSNMTLNGIALIMALFVMKPIIEAGYENYLNGPQKFDTISDIVRFSDSG 60

Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188
              +  +++ +T  + L+ F   +   + +    +N+      L+P++ +SE++ +F+IG
Sbjct: 61  LMEYKQYLKKHTDLE-LARFFQRSEEENADLKSAENNDYSLFSLLPAYALSEIKDAFKIG 119

Query: 189 FLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           F + LPF+++D+++++I++A+GMMM+ P +IS+P K++ FV +DGW +L + L++ +I
Sbjct: 120 FYLYLPFVVVDLVISSILLALGMMMMSPITISVPIKLVLFVALDGWGILSKALIEQYI 177


>gi|285018283|ref|YP_003375994.1| xanthomonas secretion apparatus protein [Xanthomonas albilineans
           GPE PC73]
 gi|283473501|emb|CBA16004.1| probable xanthomonas secretion apparatus protein [Xanthomonas
           albilineans]
          Length = 231

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 119/221 (53%), Gaps = 12/221 (5%)

Query: 38  WIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFY 97
             +    +  ++++ P L    TCF +F +VF +LR  +GM  VP N+V+ S+AL +  +
Sbjct: 5   QELSLIALIAVMALIPFLFASGTCFLKFSVVFVLLRNAIGMQQVPSNMVLNSIALMLAAF 64

Query: 98  VMSPTLDRSIEMGIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDM----- 151
           VM P +  +     +      + E    +  V  P+  ++     ++ +  F  +     
Sbjct: 65  VMQPVITSTFHAFQETDQVTSMDEVGPYLTTVLTPYRQYLAKYADKELVEFFQRVPSTVQ 124

Query: 152 ------AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
                    +   + I +        L+P++ ++ELR +F IGF + LPF++ID+IV+ +
Sbjct: 125 NTPTTPGQGTANQSAIHQVQQPSLYALLPAYGLTELRDAFRIGFYLYLPFVVIDLIVSNV 184

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           ++A+GMMM+ P +IS+P K+I FV +DGW+L+ ++L++ ++
Sbjct: 185 LLALGMMMMSPVTISMPIKLILFVALDGWTLVSKDLMEPYM 225


>gi|289677999|ref|ZP_06498889.1| type III secretion system protein [Pseudomonas syringae pv.
           syringae FF5]
 gi|330901781|gb|EGH33200.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 217

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 66/209 (31%), Positives = 116/209 (55%), Gaps = 2/209 (0%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +        LS+ P LLI+ T F +  +   I R  +G+  VPPN+ +  +AL  T +VM
Sbjct: 9   IMLALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVM 68

Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
           +P      +   +  +   N     ++++ V EP   FM  NT    ++  ++       
Sbjct: 69  APVAHDIQQRVHEHPLELSNADKLQSSLKVVIEPLQRFMTRNTDPDVVAHLLENTQRMWP 128

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
                +    +  + IP+F++SEL+  FEIGFLI +PF++ID+IV+ +++A+GM M+ P 
Sbjct: 129 KEMADQASKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPM 188

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           ++SLP K++ FVL+ GWS L+++L  S++
Sbjct: 189 TLSLPLKLLLFVLVSGWSRLLDSLFYSYM 217


>gi|167030914|gb|ABZ05782.1| HrcR [Pectobacterium carotovorum subsp. carotovorum]
          Length = 217

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 70/215 (32%), Positives = 122/215 (56%), Gaps = 2/215 (0%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           S +   +        LS+ P+++I+ TCF +  IV  I R  +G+  VPPN+ +  +AL 
Sbjct: 3   SGAFDPLMFALFLGALSLIPLMMIVCTCFLKIAIVLLITRNAIGVQQVPPNMALYGIALA 62

Query: 94  MTFYVMSPTLDRS-IEMGIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDM 151
            T +VM+P        +  +PL    IT   A +    EP   FM  N     L+   + 
Sbjct: 63  ATLFVMAPVFQDISKRVQEKPLDMTDITSLQASVTYGLEPLQTFMSRNVDPDILTHLHEN 122

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           +  +   +   K +     ++IP+F++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM
Sbjct: 123 SLHNVACSLSEKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGM 182

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
            M+ P ++SLP K++ FVL++GW+ L++ L  S++
Sbjct: 183 QMVAPMTLSLPLKLLLFVLVNGWTRLLDGLFYSYL 217


>gi|307131230|ref|YP_003883246.1| type III secretion inner membrane protein [Dickeya dadantii 3937]
 gi|306528759|gb|ADM98689.1| type III secretion inner membrane protein [Dickeya dadantii 3937]
          Length = 217

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/215 (31%), Positives = 123/215 (57%), Gaps = 2/215 (0%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           S S   V        LS+ P+++I+ TCF +  +V  I R  +G+  VPPN+ +  +AL 
Sbjct: 3   SGSFDPVMFALFLGALSLIPLMMIVCTCFLKVSMVLMITRNAIGVQQVPPNMALYGIALA 62

Query: 94  MTFYVMSPTLDRSIEM-GIQPLMNNQIT-ETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
            T +VM+P      +     P+  + +    +++ +  EP   FM  NT    L+   + 
Sbjct: 63  ATLFVMAPVFSDIKQRFQDAPVDFSSLDALESSVTKGIEPLQKFMSRNTDPDILTHLHEN 122

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           +      +   K       +++P++++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM
Sbjct: 123 SLRMWPASMSEKITTQNILLVLPAYVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGM 182

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
            M+ PT++SLP K++ FVL++GW+ L++ L  S++
Sbjct: 183 QMVAPTTLSLPLKLLLFVLVNGWTRLLDGLFYSYL 217


>gi|237800001|ref|ZP_04588462.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022856|gb|EGI02913.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 217

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 65/209 (31%), Positives = 114/209 (54%), Gaps = 2/209 (0%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +        +S+ P LLI+ T F +  +   I R  +G+  VPPN+ +  +AL  T +VM
Sbjct: 9   LLLALFLGAMSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATLFVM 68

Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
           +P      +   +  +   N      + + V EP   FM  NT    ++  ++       
Sbjct: 69  APVAHEMQQRVHEHPLELGNTEKLQASARTVIEPLQRFMTRNTDPDVVAHLLENTQRMWP 128

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
                +    +  + IP+F++SEL+  FEIGFLI +PF++ID+IV+ +++A+GM M+ P 
Sbjct: 129 KEMADQASKEDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPM 188

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           ++SLP K++ FVL+ GWS L+++L  S++
Sbjct: 189 TLSLPLKLLLFVLVSGWSRLLDSLFYSYM 217


>gi|330937035|gb|EGH41123.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 217

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 66/209 (31%), Positives = 115/209 (55%), Gaps = 2/209 (0%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +        LS+ P LLI+ T F +  +   I R  +G+  VPPN+ +  +AL  T +VM
Sbjct: 9   IMLALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVM 68

Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
           +P      +   +  +   N     ++++ V EP   FM  NT    ++  ++       
Sbjct: 69  APVAHDIQQRVHEHPLELSNADKLQSSLKVVIEPLQRFMTRNTDPDVVAHLLENTQRMWP 128

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
                +    +  + IP+F++SEL+  FEIGFLI +PF++ID+IV+ +++A+GM M+ P 
Sbjct: 129 KEMADQASKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPM 188

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           ++SLP K++ FVL+ GWS L++ L  S++
Sbjct: 189 TLSLPLKLLLFVLVSGWSRLLDRLFYSYM 217


>gi|2494567|sp|Q47856|HRCR_PANAY RecName: Full=Harpin secretion protein hrcR
 gi|1483322|emb|CAA68098.1| HrcR protein [Pantoea agglomerans]
          Length = 217

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/203 (33%), Positives = 113/203 (55%), Gaps = 2/203 (0%)

Query: 44  GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
                LS+ PIL+I+ TCF +  +V  I R  +G+  VPPN+ +  +AL  T +VM+P  
Sbjct: 13  LFLGALSLIPILMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVF 72

Query: 104 DRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
           ++  +   Q    M+N     T+I     P   FM +NT    L    + +         
Sbjct: 73  NQMQQQFSQAPADMSNMDNLKTSITNGVAPLQKFMTHNTDPDILIHLQENSVKMWPKPMS 132

Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
                    ++IP+F++SEL+  F+IGFLI +PF++ID+IV+ +++ +GM M+ P ++SL
Sbjct: 133 DDVSKDNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLTLGMQMVTPMTLSL 192

Query: 222 PFKVIFFVLIDGWSLLVENLVKS 244
           P K++  +LI+GW+ L++ L  S
Sbjct: 193 PLKMLLLILINGWTRLLDGLFYS 215


>gi|330957488|gb|EGH57748.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 217

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 68/209 (32%), Positives = 119/209 (56%), Gaps = 2/209 (0%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +        LS+ P LLI+ T F +  +   I R  +G+  VPPN+ +  +AL  T +VM
Sbjct: 9   IMLALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVM 68

Query: 100 SPTLDRSIEM-GIQPL-MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
           +P      +     PL M++     ++++ V EP   FM  NT    ++  ++       
Sbjct: 69  APVAHDIQQRVHDHPLEMSSADKLQSSLKVVIEPLQRFMTRNTDPDVVAHLLENTQRMWP 128

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
                + +  +  + IP+F++SEL+  FEIGFLI +PF++ID+IV+ +++A+GM M+ P 
Sbjct: 129 KEMADQANKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPM 188

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           ++SLP K++ FVL+ GWS L+++L  S++
Sbjct: 189 TLSLPLKLLLFVLVSGWSRLLDSLFYSYM 217


>gi|257487234|ref|ZP_05641275.1| type III secretion system protein [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|330894462|gb|EGH27123.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           mori str. 301020]
 gi|330984964|gb|EGH83067.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331009152|gb|EGH89208.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 217

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 68/209 (32%), Positives = 119/209 (56%), Gaps = 2/209 (0%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +        LS+ P LLI+ T F +  +   I R  +G+  VPPN+ +  +AL  T +VM
Sbjct: 9   IMLALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVM 68

Query: 100 SPTLDRSIEM-GIQPL-MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
           +P      +     PL M++     ++++ V EP   FM  NT    ++  ++       
Sbjct: 69  APVAHDIQQRVHDHPLEMSSADKLQSSLKLVIEPLQRFMTRNTDPDVVAHLLENTQRMWP 128

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
                + +  +  + IP+F++SEL+  FEIGFLI +PF++ID+IV+ +++A+GM M+ P 
Sbjct: 129 KEMADQANKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPM 188

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           ++SLP K++ FVL+ GWS L+++L  S++
Sbjct: 189 TLSLPLKLLLFVLVSGWSRLLDSLFYSYM 217


>gi|238577787|gb|ACR46698.1| HrcR [Pseudomonas syringae pv. tabaci]
          Length = 208

 Score =  142 bits (358), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 68/207 (32%), Positives = 118/207 (57%), Gaps = 2/207 (0%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
                  LS+ P LLI+ T F +  +   I R  +G+  VPPN+ +  +AL  T +VM+P
Sbjct: 2   LALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVMAP 61

Query: 102 TLDRSIEM-GIQPL-MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNT 159
                 +     PL M++     ++++ V EP   FM  NT    ++  ++         
Sbjct: 62  VAHDIQQRVHDHPLEMSSADKLQSSLKLVIEPLQRFMTRNTDPDVVAHLLENTQRMWPKE 121

Query: 160 DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
              + +  +  + IP+F++SEL+  FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++
Sbjct: 122 MADQANKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTL 181

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
           SLP K++ FVL+ GWS L+++L  S++
Sbjct: 182 SLPLKLLLFVLVSGWSRLLDSLFYSYM 208


>gi|271500421|ref|YP_003333446.1| Yop virulence translocation R [Dickeya dadantii Ech586]
 gi|270343976|gb|ACZ76741.1| Yop virulence translocation R [Dickeya dadantii Ech586]
          Length = 217

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 66/215 (30%), Positives = 121/215 (56%), Gaps = 2/215 (0%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           S +   V        LS+ P+ +I+ TCF +  +V  + R  +G+  VPPN+ +  +AL 
Sbjct: 3   SGNFDPVMFALFLGSLSLIPLAMIVCTCFLKISMVLMLTRNAIGVQQVPPNMALYGVALA 62

Query: 94  MTFYVMSPTLDRS-IEMGIQPLMNNQIT-ETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
            T +VM+P      +     P+  + +    +++ R  EP   FM  NT    L+   + 
Sbjct: 63  ATLFVMAPVFSDIKLRFQDAPVDFSSLDALESSVTRGIEPLQKFMSRNTDPDILTHLHEN 122

Query: 152 AHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGM 211
           +          K       +++P++++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM
Sbjct: 123 SLRMWPAAMTEKITTQNILLILPAYVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGM 182

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
            M+ PT++SLP K++ FVL++GW+ L++ L  S++
Sbjct: 183 QMVAPTTLSLPLKLLLFVLVNGWTRLLDGLFYSYL 217


>gi|82795278|gb|ABB91647.1| type III secretion protein HrcR [Pseudomonas syringae pv. tagetis]
          Length = 217

 Score =  142 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 67/197 (34%), Positives = 109/197 (55%), Gaps = 2/197 (1%)

Query: 52  APILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEM-G 110
            P LLI+ T F +  +   I R  +G+  VPPN+ +  +AL  T +VM+P      +   
Sbjct: 21  IPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVAHEMQQRVH 80

Query: 111 IQPLMNNQITETTAIQRVA-EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEY 169
             PL      +  A  R   EP   FM  NT    ++  +D            +    + 
Sbjct: 81  DHPLELGNTEKLQASARTVIEPLQRFMTRNTDPDVVAHLLDNTQRMWPKEMADQASKEDL 140

Query: 170 RILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
            + IP+F++SEL+  FEIGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP K++ FV
Sbjct: 141 LLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPMTLSLPLKLLLFV 200

Query: 230 LIDGWSLLVENLVKSFI 246
           L+ GWS L+++L  S++
Sbjct: 201 LVSGWSRLLDSLFYSYM 217


>gi|152975180|ref|YP_001374697.1| flagellar biosynthesis protein FliP [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023932|gb|ABS21702.1| Triacylglycerol lipase [Bacillus cytotoxicus NVH 391-98]
          Length = 252

 Score =  141 bits (356), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 64/210 (30%), Positives = 121/210 (57%), Gaps = 4/210 (1%)

Query: 35  ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFM 94
            S   V+ F + T+LS++  ++++ T F  F+IV  I R G+G+ ++PPN V++ LALF+
Sbjct: 45  TSNSSVQLFALVTLLSLSSSIVLLFTHFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFL 104

Query: 95  TFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
           + + M P L +       P+   +IT + A ++ A     +M  +T + DL + + +   
Sbjct: 105 SLFTMQPVLGQLKGDVWDPMTKEKITVSQAAEKTAPIMKEYMAKHTYKHDLKMMLKVRGE 164

Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
                       I    L+PSF ++++++    G  I L F+ ID+I++T++M +GMMM+
Sbjct: 165 ELPKNMK----DISLFTLVPSFTLTQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMV 220

Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           PP  +SLPFK++ F+ + G++ +V+ + K+
Sbjct: 221 PPMILSLPFKILVFIYLGGYTKIVDIMFKT 250


>gi|330950824|gb|EGH51084.1| type III secretion system protein YscR [Pseudomonas syringae Cit 7]
          Length = 218

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 66/210 (31%), Positives = 117/210 (55%), Gaps = 3/210 (1%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +        LS+ P LLI+ T F +  +   I R  +G+  VPPN+ +  +AL  T +VM
Sbjct: 9   IMLALFLGSLSLIPFLLIVCTAFLKIAMTLLITRNAIGVQQVPPNMALYGIALAATMFVM 68

Query: 100 SPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
           +P      +   +  +   N     ++++ V EP   FM  NT    ++  ++       
Sbjct: 69  APVAHDIQQRVHEHPLELSNADKLQSSLKVVIEPLQRFMTRNTDPDVVAHLLENTQRMWP 128

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
                + +  +  + IP+F++SEL+  FEIGFLI +PF++ID+IV+ +++A+GM M+ P 
Sbjct: 129 KEMADQANKNDLLLAIPAFVLSELQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPM 188

Query: 218 SISLPFKVIFFVLIDGWSLLVE-NLVKSFI 246
           ++SLP K++ FVL+ GWS L++ +L  S++
Sbjct: 189 TLSLPLKLLLFVLVSGWSRLLDPSLFYSYM 218


>gi|47565435|ref|ZP_00236476.1| flagellar biosynthetic protein fliP [Bacillus cereus G9241]
 gi|47557425|gb|EAL15752.1| flagellar biosynthetic protein fliP [Bacillus cereus G9241]
          Length = 252

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 64/210 (30%), Positives = 120/210 (57%), Gaps = 4/210 (1%)

Query: 35  ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFM 94
            S   V+ F + T+LS++  ++++ T F  F+IV  I R G+G+ ++PPN V++ LALF+
Sbjct: 45  TSNSSVQLFALVTLLSLSSSIVLLFTHFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFL 104

Query: 95  TFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
           + + M P L +       P+   +IT + A +  A     +M  +T + DL + + +   
Sbjct: 105 SLFTMQPVLGQLKTDVWDPMTKEKITVSQAAETTAPIMKEYMSKHTYKHDLKMMLKVRGE 164

Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
                       +    L+PSF ++++++    G  I L F+ ID+I++T++M +GMMM+
Sbjct: 165 ELPK----DLKDLSLFTLVPSFTLTQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMV 220

Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           PP  +SLPFK++ FV + G++ +V+ + K+
Sbjct: 221 PPMILSLPFKILVFVYLGGYTKIVDIMFKT 250


>gi|163939576|ref|YP_001644460.1| flagellar biosynthesis protein FliP [Bacillus weihenstephanensis
           KBAB4]
 gi|163861773|gb|ABY42832.1| Triacylglycerol lipase [Bacillus weihenstephanensis KBAB4]
          Length = 252

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 64/210 (30%), Positives = 120/210 (57%), Gaps = 4/210 (1%)

Query: 35  ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFM 94
            S   V+ F + T+LS++  ++++ T F  F+IV  I R G+G+ ++PPN V++ LALF+
Sbjct: 45  TSNSSVQLFALVTLLSLSSSIVLLFTHFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFL 104

Query: 95  TFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
           + + M P L +       P+   +IT + A +  A     +M  +T + DL + + +   
Sbjct: 105 SLFTMQPVLGQLKSDVWDPMTKEKITVSQAAETTAPIMKDYMSKHTYKHDLKMMLKVRGE 164

Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
                       +    L+PSF ++++++    G  I L F+ ID+I++T++M +GMMM+
Sbjct: 165 ELPK----DLKDLSLFTLVPSFTLTQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMV 220

Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           PP  +SLPFK++ FV + G++ +V+ + K+
Sbjct: 221 PPMILSLPFKILVFVYLGGYTKIVDIMFKT 250


>gi|42780859|ref|NP_978106.1| flagellar biosynthesis protein FliP [Bacillus cereus ATCC 10987]
 gi|49477322|ref|YP_035885.1| flagellar biosynthesis protein FliP [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52143691|ref|YP_083136.1| flagellar biosynthesis protein FliP [Bacillus cereus E33L]
 gi|167633258|ref|ZP_02391583.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
           str. A0442]
 gi|170686220|ref|ZP_02877442.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
           str. A0465]
 gi|196033278|ref|ZP_03100690.1| putative flagellar biosynthetic protein FliP [Bacillus cereus W]
 gi|196039146|ref|ZP_03106453.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
           NVH0597-99]
 gi|196045067|ref|ZP_03112300.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
           03BB108]
 gi|206974770|ref|ZP_03235685.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
           H3081.97]
 gi|217959249|ref|YP_002337797.1| flagellar biosynthesis protein FliP [Bacillus cereus AH187]
 gi|218902880|ref|YP_002450714.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
           AH820]
 gi|254683268|ref|ZP_05147129.1| flagellar biosynthesis protein FliP [Bacillus anthracis str.
           CNEVA-9066]
 gi|254723851|ref|ZP_05185637.1| flagellar biosynthesis protein FliP [Bacillus anthracis str. A1055]
 gi|254741030|ref|ZP_05198718.1| flagellar biosynthesis protein FliP [Bacillus anthracis str. Kruger
           B]
 gi|300117310|ref|ZP_07055100.1| flagellar biosynthesis protein FliP [Bacillus cereus SJ1]
 gi|42736779|gb|AAS40714.1| flagellar biosynthetic protein FliP, putative [Bacillus cereus ATCC
           10987]
 gi|49328878|gb|AAT59524.1| flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51977160|gb|AAU18710.1| flagellar biosynthetic protein P [Bacillus cereus E33L]
 gi|167531296|gb|EDR93974.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
           str. A0442]
 gi|170669917|gb|EDT20658.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
           str. A0465]
 gi|195993712|gb|EDX57668.1| putative flagellar biosynthetic protein FliP [Bacillus cereus W]
 gi|196024069|gb|EDX62743.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
           03BB108]
 gi|196030291|gb|EDX68891.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
           NVH0597-99]
 gi|206746789|gb|EDZ58181.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
           H3081.97]
 gi|217065617|gb|ACJ79867.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
           AH187]
 gi|218539563|gb|ACK91961.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
           AH820]
 gi|298725145|gb|EFI65797.1| flagellar biosynthesis protein FliP [Bacillus cereus SJ1]
 gi|324325784|gb|ADY21044.1| flagellar biosynthesis protein FliP [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 252

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 64/210 (30%), Positives = 120/210 (57%), Gaps = 4/210 (1%)

Query: 35  ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFM 94
            S   V+ F + T+LS++  ++++ T F  F+IV  I R G+G+ ++PPN V++ LALF+
Sbjct: 45  TSNSSVQLFALVTLLSLSSSIVLLFTHFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFL 104

Query: 95  TFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
           + + M P L +       P+   +IT + A +  A     +M  +T + DL + + +   
Sbjct: 105 SLFTMQPVLGQLKSDVWDPMTKEKITVSQAAETTAPIMKEYMSKHTYKHDLKMMLKVRGE 164

Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
                       +    L+PSF ++++++    G  I L F+ ID+I++T++M +GMMM+
Sbjct: 165 ELPK----DLKDLSLFTLVPSFTLTQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMV 220

Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           PP  +SLPFK++ FV + G++ +V+ + K+
Sbjct: 221 PPMILSLPFKILVFVYLGGYTKIVDIMFKT 250


>gi|30019811|ref|NP_831442.1| flagellar biosynthesis protein FliP [Bacillus cereus ATCC 14579]
 gi|75763363|ref|ZP_00743101.1| Flagellar biosynthetic protein fliP [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|118477199|ref|YP_894350.1| flagellar biosynthesis protein FliP [Bacillus thuringiensis str. Al
           Hakam]
 gi|218235808|ref|YP_002366451.1| flagellar biosynthesis protein FliP [Bacillus cereus B4264]
 gi|218896700|ref|YP_002445111.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
           G9842]
 gi|225863624|ref|YP_002749002.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
           03BB102]
 gi|296502367|ref|YP_003664067.1| flagellar biosynthesis protein FliP [Bacillus thuringiensis BMB171]
 gi|29895356|gb|AAP08643.1| Flagellar biosynthetic protein fliP [Bacillus cereus ATCC 14579]
 gi|74489154|gb|EAO52632.1| Flagellar biosynthetic protein fliP [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|118416424|gb|ABK84843.1| flagellar biosynthetic protein P [Bacillus thuringiensis str. Al
           Hakam]
 gi|218163765|gb|ACK63757.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
           B4264]
 gi|218545099|gb|ACK97493.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
           G9842]
 gi|225787593|gb|ACO27810.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
           03BB102]
 gi|296323419|gb|ADH06347.1| flagellar biosynthesis protein FliP [Bacillus thuringiensis BMB171]
 gi|326939379|gb|AEA15275.1| flagellar biosynthesis protein FliP [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 252

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 64/210 (30%), Positives = 120/210 (57%), Gaps = 4/210 (1%)

Query: 35  ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFM 94
            S   V+ F + T+LS++  ++++ T F  F+IV  I R G+G+ ++PPN V++ LALF+
Sbjct: 45  TSNSSVQLFALVTLLSLSSSIVLLFTHFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFL 104

Query: 95  TFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
           + + M P L +       P+   +IT + A +  A     +M  +T + DL + + +   
Sbjct: 105 SLFTMQPVLGQLKSDVWDPMTKEKITVSQAAETTAPIMKEYMSKHTYKHDLKMMLKVRGE 164

Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
                       +    L+PSF ++++++    G  I L F+ ID+I++T++M +GMMM+
Sbjct: 165 ELPK----DLKDLSLFTLVPSFTLTQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMV 220

Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           PP  +SLPFK++ FV + G++ +V+ + K+
Sbjct: 221 PPMILSLPFKILVFVYLGGYTKIVDIMFKT 250


>gi|206970774|ref|ZP_03231726.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
           AH1134]
 gi|206734410|gb|EDZ51580.1| putative flagellar biosynthetic protein FliP [Bacillus cereus
           AH1134]
          Length = 252

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 64/210 (30%), Positives = 120/210 (57%), Gaps = 4/210 (1%)

Query: 35  ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFM 94
            S   V+ F + T+LS++  ++++ T F  F+IV  I R G+G+ ++PPN V++ LALF+
Sbjct: 45  TSNSSVQLFALVTLLSLSSSIVLLFTHFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFL 104

Query: 95  TFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
           + + M P L +       P+   +IT + A +  A     +M  +T + DL + + +   
Sbjct: 105 SLFTMQPVLGQLKSDVWDPMTKEKITVSQAAETTAPIMKEYMSKHTYKHDLKMMLKVRGE 164

Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
                       +    L+PSF ++++++    G  I L F+ ID+I++T++M +GMMM+
Sbjct: 165 ELPK----DLKDLSLFTLVPSFTLTQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMV 220

Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           PP  +SLPFK++ FV + G++ +V+ + K+
Sbjct: 221 PPMILSLPFKILVFVYLGGYTKIVDIMFKT 250


>gi|301053304|ref|YP_003791515.1| flagellar biosynthesis protein [Bacillus anthracis CI]
 gi|300375473|gb|ADK04377.1| flagellar biosynthesis protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 252

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 64/210 (30%), Positives = 120/210 (57%), Gaps = 4/210 (1%)

Query: 35  ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFM 94
            S   V+ F + T+LS++  ++++ T F  F+IV  I R G+G+ ++PPN V++ LALF+
Sbjct: 45  TSNSSVQLFALVTLLSLSSSIVLLFTHFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFL 104

Query: 95  TFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
           + + M P L +       P+   +IT + A +  A     +M  +T + DL + + +   
Sbjct: 105 SLFTMQPVLGQLKSDVWDPMTKEKITVSQAAETTAPIMKEYMSKHTYKHDLKMMLKVRGE 164

Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
                       +    L+PSF ++++++    G  I L F+ ID+I++T++M +GMMM+
Sbjct: 165 ELPK----DLKDLSLFTLVPSFTLTQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMV 220

Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           PP  +SLPFK++ FV + G++ +V+ + K+
Sbjct: 221 PPMILSLPFKILVFVYLGGYTKIVDIMFKT 250


>gi|30261770|ref|NP_844147.1| flagellar biosynthesis protein FliP [Bacillus anthracis str. Ames]
 gi|47527003|ref|YP_018352.1| flagellar biosynthesis protein FliP [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184604|ref|YP_027856.1| flagellar biosynthesis protein FliP [Bacillus anthracis str.
           Sterne]
 gi|65319047|ref|ZP_00392006.1| COG1338: Flagellar biosynthesis pathway, component FliP [Bacillus
           anthracis str. A2012]
 gi|165869274|ref|ZP_02213933.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
           str. A0488]
 gi|167638785|ref|ZP_02397060.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
           str. A0193]
 gi|170706438|ref|ZP_02896898.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
           str. A0389]
 gi|177650630|ref|ZP_02933597.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
           str. A0174]
 gi|190566255|ref|ZP_03019173.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
           Tsiankovskii-I]
 gi|227815461|ref|YP_002815470.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
           str. CDC 684]
 gi|229600042|ref|YP_002866159.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
           str. A0248]
 gi|254734621|ref|ZP_05192333.1| flagellar biosynthesis protein FliP [Bacillus anthracis str.
           Western North America USA6153]
 gi|254755273|ref|ZP_05207307.1| flagellar biosynthesis protein FliP [Bacillus anthracis str.
           Vollum]
 gi|254759809|ref|ZP_05211833.1| flagellar biosynthesis protein FliP [Bacillus anthracis str.
           Australia 94]
 gi|30255998|gb|AAP25633.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
           str. Ames]
 gi|47502151|gb|AAT30827.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49178531|gb|AAT53907.1| flagellar biosynthetic protein FliP, putative [Bacillus anthracis
           str. Sterne]
 gi|164714714|gb|EDR20232.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
           str. A0488]
 gi|167513249|gb|EDR88620.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
           str. A0193]
 gi|170128536|gb|EDS97403.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
           str. A0389]
 gi|172083774|gb|EDT68834.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
           str. A0174]
 gi|190562390|gb|EDV16357.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
           Tsiankovskii-I]
 gi|227003763|gb|ACP13506.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
           str. CDC 684]
 gi|229264450|gb|ACQ46087.1| putative flagellar biosynthetic protein FliP [Bacillus anthracis
           str. A0248]
          Length = 252

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 64/210 (30%), Positives = 120/210 (57%), Gaps = 4/210 (1%)

Query: 35  ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFM 94
            S   V+ F + T+LS++  ++++ T F  F+IV  I R G+G+ ++PPN V++ LALF+
Sbjct: 45  TSNSSVQLFALVTLLSLSSSIVLLFTHFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFL 104

Query: 95  TFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
           + + M P L +       P+   +IT + A +  A     +M  +T + DL + + +   
Sbjct: 105 SLFTMQPVLGQLKSDVWDPMTKEKITVSQAAETTAPIMKEYMSKHTYKHDLKMMLKVRGE 164

Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
                       +    L+PSF ++++++    G  I L F+ ID+I++T++M +GMMM+
Sbjct: 165 ELPK----DLKDLSLFTLVPSFTLTQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMMMV 220

Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           PP  +SLPFK++ FV + G++ +V+ + K+
Sbjct: 221 PPMILSLPFKILIFVYLGGYTKIVDIMFKT 250


>gi|46203617|ref|ZP_00051259.2| COG1338: Flagellar biosynthesis pathway, component FliP
           [Magnetospirillum magnetotacticum MS-1]
          Length = 210

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 65/186 (34%), Positives = 104/186 (55%), Gaps = 6/186 (3%)

Query: 9   LFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIV 68
           L L +     A+S   D+         +   ++   + T+L++AP +L+M T F R ++V
Sbjct: 19  LLLSSAGCALAQSVTLDL----GAGGTTERALQLVALITVLALAPSVLVMATAFTRIVVV 74

Query: 69  FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRV 128
            SILR+ +G  + PPN VI+SLALF+T +VM+PT   +   GI+PLM  QI+++ A +R 
Sbjct: 75  LSILRSALGTQTAPPNAVIVSLALFLTAFVMAPTAREAYRAGIEPLMAGQISQSQAFERA 134

Query: 129 AEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188
           + PF   +    R ++ S  +    +  R   I +      + L P+FMI  LRR+FEIG
Sbjct: 135 SGPFQD-LHGAQRPREGSETVPRHGAPARPGRIQEAVGPGDQSL-PAFMIFGLRRAFEIG 192

Query: 189 FLIILP 194
           FL+ +P
Sbjct: 193 FLLFIP 198


>gi|222095389|ref|YP_002529449.1| flagellar biosynthesis protein flip [Bacillus cereus Q1]
 gi|221239447|gb|ACM12157.1| flagellar biosynthetic protein FliP [Bacillus cereus Q1]
          Length = 252

 Score =  138 bits (349), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 63/210 (30%), Positives = 120/210 (57%), Gaps = 4/210 (1%)

Query: 35  ISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFM 94
            S   V+ F + T+LS++  ++++ T F  F+IV  I R G+G+ ++PPN V++ LALF+
Sbjct: 45  TSNSSVQLFALVTLLSLSSSIVLLFTHFTYFMIVLGITRQGLGVMNLPPNQVLVGLALFL 104

Query: 95  TFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154
           + + M P L +       P+   +IT + A +  A     +M  +T + DL + + +   
Sbjct: 105 SLFTMQPVLGQLKSDVWDPMTKEKITVSQAAETTAPIMKEYMSKHTYKHDLKMMLKVRGE 164

Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
                       +    L+PSF ++++++    G  I L F+ ID+I++T++M +GM+M+
Sbjct: 165 ELPK----DLKDLSLFTLVPSFTLTQIQKGLLTGMFIYLAFVFIDLIISTLLMYLGMLMV 220

Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
           PP  +SLPFK++ FV + G++ +V+ + K+
Sbjct: 221 PPMILSLPFKILVFVYLGGYTKIVDIMFKT 250


>gi|312958828|ref|ZP_07773347.1| type III secretion system rscR [Pseudomonas fluorescens WH6]
 gi|311286598|gb|EFQ65160.1| type III secretion system rscR [Pseudomonas fluorescens WH6]
          Length = 216

 Score =  138 bits (347), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 70/209 (33%), Positives = 117/209 (55%), Gaps = 2/209 (0%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +        LS+ P+LLI+ T F + +IV  I R  +G+  VPP++ I  +AL  T ++M
Sbjct: 8   LVLAMFLGALSLMPMLLIICTSFLKIVIVLMITRNAIGVQQVPPSMAINGIALAATLFIM 67

Query: 100 SPTLDRSIEM-GIQPL-MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
           +P      E   + PL ++N  T          P   FM  N     L+  ++       
Sbjct: 68  APVGYEIAESIKVSPLDLSNVQTVLQTGGEAIMPLRAFMLRNVDPDVLTHLLENTARLWP 127

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
                +    +  +LIP+F++S+L+  FEIGFLI +PF++ID+IV+ +++A+GM M+ P 
Sbjct: 128 AQMAEEVQREDLILLIPAFVLSQLQAGFEIGFLIYIPFIVIDLIVSNLLLALGMQMVSPM 187

Query: 218 SISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +ISLP K++ FVL+ GWS L+++L  S++
Sbjct: 188 TISLPLKLLLFVLVSGWSRLLDSLFLSYL 216


>gi|86157131|ref|YP_463916.1| type III secretion system protein [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85773642|gb|ABC80479.1| type III secretion system inner membrane P protein
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 225

 Score =  137 bits (346), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 75/218 (34%), Positives = 126/218 (57%), Gaps = 2/218 (0%)

Query: 29  IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVII 88
           +P+   ++        +  +L++ P  L+M+T F +  +V SI R+ +G   VPPN V+ 
Sbjct: 7   VPSAGPVADRPAEMLVLLALLALVPAALVMLTSFLKISVVLSIARSALGAPQVPPNTVVT 66

Query: 89  SLALFMTFYVMSPTLDRSIEMGIQPLMNNQITET-TAIQRVAEPFWVFMRNNTREKDLSL 147
            LAL +T  VM+P  +R+  +         +  T  A+QR A P   F+    R  D + 
Sbjct: 67  GLALVLTLLVMAPVAERAAALARPAPGERGLPATLAALQRGAGPVKAFLARFARPDDRAA 126

Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
           F+D+A    R  D       +  +L P+F++SELRR+F IGFL+ +PFL++D++++ +++
Sbjct: 127 FLDVARR-LRAPDAAAPADDDLAVLAPAFVVSELRRAFTIGFLVFVPFLVVDLVISNVLL 185

Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           A+G+  L PTS++LPFK++ FV +DGW LL   L  S+
Sbjct: 186 ALGLTQLSPTSVALPFKLLLFVAVDGWKLLARALALSY 223


>gi|197121155|ref|YP_002133106.1| type III secretion system protein [Anaeromyxobacter sp. K]
 gi|220915856|ref|YP_002491160.1| type III secretion system inner membrane P protein
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|196171004|gb|ACG71977.1| type III secretion system inner membrane P protein
           [Anaeromyxobacter sp. K]
 gi|219953710|gb|ACL64094.1| type III secretion system inner membrane P protein
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 225

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 70/189 (37%), Positives = 113/189 (59%), Gaps = 2/189 (1%)

Query: 58  MVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117
           M+T F +  +V SI R+ +G   VPPN V+  LAL +T  VM+P  +R+  +        
Sbjct: 36  MLTSFLKISVVLSIARSALGAPQVPPNTVVTGLALVLTMLVMAPVAERAAALARPAPGER 95

Query: 118 QITET-TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176
            +  +  A+QR A P   F+    R  D + F+D+A    R  D       +  +L P+F
Sbjct: 96  GLAASLAALQRGAGPVKAFLARFARPDDRAAFLDVARR-LRAPDAAPPADDDLAVLAPAF 154

Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
           ++SELRR+F IGFL+ +PFL++D++++ +++A+G+  L PTS++LPFK++ FV +DGW L
Sbjct: 155 VVSELRRAFTIGFLVFVPFLVVDLVISNVLLALGLTQLSPTSVALPFKLLLFVAVDGWKL 214

Query: 237 LVENLVKSF 245
           L   L  S+
Sbjct: 215 LARALALSY 223


>gi|76097667|gb|ABA39515.1| flagellar protein [Paenibacillus larvae subsp. larvae]
          Length = 140

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 64/144 (44%), Positives = 101/144 (70%), Gaps = 4/144 (2%)

Query: 87  IISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLS 146
           ++ LALF T ++M+PTL    ++ +QP +  ++ +T A+++ AEP   FM ++TR KDL 
Sbjct: 1   LVGLALFPTLFIMAPTLGDINQVAVQPYIKGELNQTQALEKAAEPIKKFMWSHTRPKDLQ 60

Query: 147 LFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIV 206
           LF+D +++   N      +      L+P+F ISEL+ +F++GF+I +PFL+IDMI+++ +
Sbjct: 61  LFLDYSNAEKPN----GPEDTPIAALVPAFAISELKTAFQMGFMIFIPFLVIDMIISSTL 116

Query: 207 MAMGMMMLPPTSISLPFKVIFFVL 230
           MAMGMMMLPP  ISLPFK++ FVL
Sbjct: 117 MAMGMMMLPPVMISLPFKILLFVL 140


>gi|73532640|dbj|BAE19878.1| type III secretion apparatus [Edwardsiella tarda]
          Length = 171

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/170 (31%), Positives = 91/170 (53%), Gaps = 1/170 (0%)

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRS-IEMGIQPLMNNQITETTAIQRVAEPFWVF 135
           G    P N+ +  LAL +T ++M+P        +   P                +P+  F
Sbjct: 1   GYSRSPRNIALYGLALILTLFIMTPVGTAVQARLADAPAEAQTTLLARLSDNTLDPYRQF 60

Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195
           +R +T    L  F  +A  S   +   +       +L+P+F +S+L  +F+IG L+ LPF
Sbjct: 61  LRQHTSATQLHFFRQVATKSWPASVREQISDDSLLLLMPAFAVSQLVEAFQIGLLLFLPF 120

Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           + ID+IV+ I++AMGMMM+ P +IS+PFK++ F+L+ GW  L+  L+ S+
Sbjct: 121 IAIDLIVSNILLAMGMMMVSPMTISMPFKLLVFILVGGWDKLLGQLLLSY 170


>gi|12082757|gb|AAG48604.1|AF306650_1 SpaP [Sodalis glossinidius]
          Length = 189

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/176 (25%), Positives = 94/176 (53%), Gaps = 3/176 (1%)

Query: 74  TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQP--LMNNQITETTAIQRVAEP 131
              G+  VP NL +  +AL +  ++M P    +     +    + +  +    ++   E 
Sbjct: 1   NAFGLQQVPSNLTLNGIALMLAMFIMGPIAGDAYNAYQEQPVALGSAASVLEFLENSMES 60

Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIE-YRILIPSFMISELRRSFEIGFL 190
           +  +++     +    F           D   + H      L+P++ +SE++ SF IGF 
Sbjct: 61  YRHYLQKYADPRLTEFFDRAHGGGGAAHDAPASGHAPSMLALLPAYALSEIKDSFRIGFY 120

Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           + LPF+++D++++++++A+GMMM+ P ++S+P K++ FV++DGW+LL + LV  ++
Sbjct: 121 LYLPFVVVDLLISSVLLALGMMMMSPITLSVPIKLVLFVMLDGWTLLSQGLVLQYL 176


>gi|170690582|ref|ZP_02881749.1| Yop virulence translocation R [Burkholderia graminis C4D1M]
 gi|170145017|gb|EDT13178.1| Yop virulence translocation R [Burkholderia graminis C4D1M]
          Length = 164

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/163 (29%), Positives = 97/163 (59%), Gaps = 2/163 (1%)

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTRE 142
           +V+  +A+ ++ YVM+P    +++      +  Q T+          EPF  F++ +T E
Sbjct: 1   MVLNGVAILVSLYVMAPGRHAAMQSMQGQTIAGQPTQALIQVFSAAREPFRTFLQKHTNE 60

Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202
           ++   F+  A+        +     +  +L P+F ++EL  +F+IGFL+ + F++ID+I+
Sbjct: 61  REKRFFIRSANVVWPKDAASSLHENDLIVLAPAFTLTELTDAFKIGFLLYIAFIVIDLII 120

Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           A +++AMG+  + PT++++PFK++ FV++DGWS L+  LV ++
Sbjct: 121 ANVLLAMGLNQVTPTNVAIPFKLLLFVVMDGWSTLIHGLVMTY 163


>gi|229011059|ref|ZP_04168253.1| Flagellar biosynthetic protein FliP [Bacillus mycoides DSM 2048]
 gi|228750231|gb|EEM00063.1| Flagellar biosynthetic protein FliP [Bacillus mycoides DSM 2048]
          Length = 177

 Score =  128 bits (321), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 103/179 (57%), Gaps = 4/179 (2%)

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
           +IV  I R G+G+ ++PPN V++ LALF++ + M P L +       P+   +IT + A 
Sbjct: 1   MIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKITVSQAA 60

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
           +  A     +M  +T + DL + + +               +    L+PSF ++++++  
Sbjct: 61  ETTAPIMKDYMSKHTYKHDLKMMLKVRGEELPK----DLKDLSLFTLVPSFTLTQIQKGL 116

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
             G  I L F+ ID+I++T++M +GMMM+PP+ +SLPFK++ FV + G++ +V+ + K+
Sbjct: 117 LTGMFIYLAFVFIDLIISTLLMYLGMMMVPPSILSLPFKILVFVYLGGYTKIVDIMFKT 175


>gi|229160728|ref|ZP_04288720.1| Flagellar biosynthetic protein FliP [Bacillus cereus R309803]
 gi|228622743|gb|EEK79577.1| Flagellar biosynthetic protein FliP [Bacillus cereus R309803]
          Length = 177

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 56/179 (31%), Positives = 102/179 (56%), Gaps = 4/179 (2%)

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
           +IV  I R G+G+ ++PPN V++ LALF++ + M P L +       P+   QIT + A 
Sbjct: 1   MIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEQITVSQAA 60

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
           +  A     +M  +T + DL + + +               +    L+PSF ++++++  
Sbjct: 61  ETTAPIMKDYMSKHTYKHDLKMMLKVRGEELPK----DLKDLSLFTLVPSFTLTQIQKGL 116

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
             G  I L F+ ID+I++T++M +GMMM+PP  +SLPFK++ FV + G++ +V+ + K+
Sbjct: 117 LTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIVDIMFKT 175


>gi|229017052|ref|ZP_04173971.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH1273]
 gi|229023233|ref|ZP_04179743.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH1272]
 gi|228738027|gb|EEL88513.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH1272]
 gi|228744225|gb|EEL94308.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH1273]
          Length = 177

 Score =  128 bits (321), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 102/179 (56%), Gaps = 4/179 (2%)

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
           +IV  I R G+G+ ++PPN V++ LALF++ + M P L +       P+   +IT + A 
Sbjct: 1   MIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKITVSQAA 60

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
           +  A     +M  +T + DL + + +               +    L+PSF ++++++  
Sbjct: 61  ETTAPIMKDYMSKHTYKHDLKMMLKVRGEELPK----DLKDLSLFTLVPSFTLTQIQKGL 116

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
             G  I L F+ ID+I++T++M +GMMM+PP  +SLPFK++ FV + G++ +V+ + K+
Sbjct: 117 LTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIVDIMFKT 175


>gi|229058415|ref|ZP_04196799.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH603]
 gi|229132594|ref|ZP_04261442.1| Flagellar biosynthetic protein FliP [Bacillus cereus BDRD-ST196]
 gi|229166621|ref|ZP_04294373.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH621]
 gi|228616875|gb|EEK73948.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH621]
 gi|228650826|gb|EEL06813.1| Flagellar biosynthetic protein FliP [Bacillus cereus BDRD-ST196]
 gi|228719924|gb|EEL71514.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH603]
          Length = 177

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 102/179 (56%), Gaps = 4/179 (2%)

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
           +IV  I R G+G+ ++PPN V++ LALF++ + M P L +       P+   +IT + A 
Sbjct: 1   MIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKITVSQAA 60

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
           +  A     +M  +T + DL + + +               +    L+PSF ++++++  
Sbjct: 61  ETTAPIMKDYMSKHTYKHDLKMMLKVRGEELPK----DLKDLSLFTLVPSFTLTQIQKGL 116

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
             G  I L F+ ID+I++T++M +GMMM+PP  +SLPFK++ FV + G++ +V+ + K+
Sbjct: 117 LTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIVDIMFKT 175


>gi|229096251|ref|ZP_04227224.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock3-29]
 gi|229102365|ref|ZP_04233073.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock3-28]
 gi|229115206|ref|ZP_04244616.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock1-3]
 gi|228668346|gb|EEL23778.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock1-3]
 gi|228681012|gb|EEL35181.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock3-28]
 gi|228687211|gb|EEL41116.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock3-29]
          Length = 177

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/179 (31%), Positives = 102/179 (56%), Gaps = 4/179 (2%)

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
           +IV  I R G+G+ ++PPN V++ LALF++ + M P L +       P+   QIT + A 
Sbjct: 1   MIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEQITVSQAA 60

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
           +  A     +M  +T + DL + + +               +    L+PSF ++++++  
Sbjct: 61  ETTAPIMKDYMAKHTYKHDLKMMLKVRGEELPK----DLKDLSLFTLVPSFTLTQIQKGL 116

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
             G  I L F+ ID+I++T++M +GMMM+PP  +SLPFK++ FV + G++ +V+ + K+
Sbjct: 117 LTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIVDIMFKT 175


>gi|228900348|ref|ZP_04064577.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis IBL
           4222]
 gi|228907399|ref|ZP_04071257.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis IBL
           200]
 gi|228914344|ref|ZP_04077959.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228920476|ref|ZP_04083821.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228926802|ref|ZP_04089870.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228933050|ref|ZP_04095913.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228938879|ref|ZP_04101479.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228945369|ref|ZP_04107724.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228952149|ref|ZP_04114241.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228958047|ref|ZP_04119782.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228964750|ref|ZP_04125857.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228971760|ref|ZP_04132381.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978369|ref|ZP_04138746.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis Bt407]
 gi|228984851|ref|ZP_04145021.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229029446|ref|ZP_04185529.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH1271]
 gi|229043522|ref|ZP_04191231.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH676]
 gi|229069317|ref|ZP_04202607.1| Flagellar biosynthetic protein FliP [Bacillus cereus F65185]
 gi|229078948|ref|ZP_04211500.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock4-2]
 gi|229090729|ref|ZP_04221962.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock3-42]
 gi|229109222|ref|ZP_04238821.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock1-15]
 gi|229121318|ref|ZP_04250549.1| Flagellar biosynthetic protein FliP [Bacillus cereus 95/8201]
 gi|229127093|ref|ZP_04256090.1| Flagellar biosynthetic protein FliP [Bacillus cereus BDRD-Cer4]
 gi|229138466|ref|ZP_04267055.1| Flagellar biosynthetic protein FliP [Bacillus cereus BDRD-ST26]
 gi|229149971|ref|ZP_04278197.1| Flagellar biosynthetic protein FliP [Bacillus cereus m1550]
 gi|229155337|ref|ZP_04283447.1| Flagellar biosynthetic protein FliP [Bacillus cereus ATCC 4342]
 gi|229172412|ref|ZP_04299971.1| Flagellar biosynthetic protein FliP [Bacillus cereus MM3]
 gi|229178174|ref|ZP_04305545.1| Flagellar biosynthetic protein FliP [Bacillus cereus 172560W]
 gi|229183958|ref|ZP_04311173.1| Flagellar biosynthetic protein FliP [Bacillus cereus BGSC 6E1]
 gi|229189864|ref|ZP_04316874.1| Flagellar biosynthetic protein FliP [Bacillus cereus ATCC 10876]
 gi|229195978|ref|ZP_04322731.1| Flagellar biosynthetic protein FliP [Bacillus cereus m1293]
 gi|228587537|gb|EEK45602.1| Flagellar biosynthetic protein FliP [Bacillus cereus m1293]
 gi|228593538|gb|EEK51347.1| Flagellar biosynthetic protein FliP [Bacillus cereus ATCC 10876]
 gi|228599483|gb|EEK57088.1| Flagellar biosynthetic protein FliP [Bacillus cereus BGSC 6E1]
 gi|228605304|gb|EEK62754.1| Flagellar biosynthetic protein FliP [Bacillus cereus 172560W]
 gi|228610883|gb|EEK68146.1| Flagellar biosynthetic protein FliP [Bacillus cereus MM3]
 gi|228628052|gb|EEK84769.1| Flagellar biosynthetic protein FliP [Bacillus cereus ATCC 4342]
 gi|228633493|gb|EEK90096.1| Flagellar biosynthetic protein FliP [Bacillus cereus m1550]
 gi|228645003|gb|EEL01246.1| Flagellar biosynthetic protein FliP [Bacillus cereus BDRD-ST26]
 gi|228656209|gb|EEL12050.1| Flagellar biosynthetic protein FliP [Bacillus cereus BDRD-Cer4]
 gi|228662163|gb|EEL17772.1| Flagellar biosynthetic protein FliP [Bacillus cereus 95/8201]
 gi|228674232|gb|EEL29477.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock1-15]
 gi|228692671|gb|EEL46397.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock3-42]
 gi|228704362|gb|EEL56796.1| Flagellar biosynthetic protein FliP [Bacillus cereus Rock4-2]
 gi|228713804|gb|EEL65689.1| Flagellar biosynthetic protein FliP [Bacillus cereus F65185]
 gi|228725744|gb|EEL76992.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH676]
 gi|228731905|gb|EEL82804.1| Flagellar biosynthetic protein FliP [Bacillus cereus AH1271]
 gi|228774801|gb|EEM23197.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228781386|gb|EEM29587.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis Bt407]
 gi|228787850|gb|EEM35808.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228795000|gb|EEM42499.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228801564|gb|EEM48446.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228807503|gb|EEM54030.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228814341|gb|EEM60607.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228820728|gb|EEM66753.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228826651|gb|EEM72422.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228832915|gb|EEM78484.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228839106|gb|EEM84402.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228845338|gb|EEM90374.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228852260|gb|EEM97056.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis IBL
           200]
 gi|228859235|gb|EEN03666.1| Flagellar biosynthetic protein FliP [Bacillus thuringiensis IBL
           4222]
          Length = 177

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 102/179 (56%), Gaps = 4/179 (2%)

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
           +IV  I R G+G+ ++PPN V++ LALF++ + M P L +       P+   +IT + A 
Sbjct: 1   MIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKITVSQAA 60

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
           +  A     +M  +T + DL + + +               +    L+PSF ++++++  
Sbjct: 61  ETTAPIMKEYMSKHTYKHDLKMMLKVRGEELPK----DLKDLSLFTLVPSFTLTQIQKGL 116

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
             G  I L F+ ID+I++T++M +GMMM+PP  +SLPFK++ FV + G++ +V+ + K+
Sbjct: 117 LTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIVDIMFKT 175


>gi|229144379|ref|ZP_04272784.1| Flagellar biosynthetic protein FliP [Bacillus cereus BDRD-ST24]
 gi|228639010|gb|EEK95435.1| Flagellar biosynthetic protein FliP [Bacillus cereus BDRD-ST24]
          Length = 177

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 102/179 (56%), Gaps = 4/179 (2%)

Query: 66  IIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAI 125
           +IV  I R G+G+ ++PPN V++ LALF++ + M P L +       P+   +IT + A 
Sbjct: 1   MIVLGITRQGLGVMNLPPNQVLVGLALFLSLFTMQPVLGQLKSDVWDPMTKEKITVSQAA 60

Query: 126 QRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSF 185
           +  A     +M  +T + DL + + +               +    L+PSF ++++++  
Sbjct: 61  ETTAPIMKEYMSKHTYKHDLKMMLKVRGEQLPK----DLKDLSLFTLVPSFTLTQIQKGL 116

Query: 186 EIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKS 244
             G  I L F+ ID+I++T++M +GMMM+PP  +SLPFK++ FV + G++ +V+ + K+
Sbjct: 117 LTGMFIYLAFVFIDLIISTLLMYLGMMMVPPMILSLPFKILVFVYLGGYTKIVDIMFKT 175


>gi|333008529|gb|EGK27998.1| putative type III secretion apparatus integral membrane protein
           component [Shigella flexneri K-218]
 gi|333017443|gb|EGK36759.1| surface presentation of antigens protein spaP [Shigella flexneri
           K-227]
 gi|333020359|gb|EGK39623.1| putative type III secretion apparatus integral membrane protein
           component [Shigella flexneri K-304]
          Length = 167

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 44/164 (26%), Positives = 97/164 (59%), Gaps = 3/164 (1%)

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQ-PLMNNQITETTAI-QRVAEPFWVFMRNNTRE 142
           + +  +AL M  +VM P ++   E  +  P   + I++           +  +++ +T  
Sbjct: 1   MTLNGIALIMALFVMKPIIEAGYENYLNGPQKFDTISDIVRFSDSGLMEYKQYLKKHTDL 60

Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202
           + L+ F   +   + +    +N+      L+P++ +SE++ +F+IGF + LPF+++D+++
Sbjct: 61  E-LARFFQRSEEENADLKSAENNDYSLFSLLPAYALSEIKDAFKIGFYLYLPFVVVDLVI 119

Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           ++I++A+GMMM+ P +IS+P K++ FV +DGW +L + L++ +I
Sbjct: 120 SSILLALGMMMMSPITISVPIKLVLFVALDGWGILSKALIEQYI 163


>gi|179741187|gb|ACB86708.1| HrcR [Dyella japonica]
          Length = 154

 Score =  125 bits (313), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 43/154 (27%), Positives = 87/154 (56%), Gaps = 2/154 (1%)

Query: 77  GMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWV 134
           G+  VPPN+V+  +A+ ++ Y+M+P   ++ +      ++ Q T+          EPF +
Sbjct: 1   GVQQVPPNMVLNGIAILVSLYIMAPIGMQAAQSLQGQQIDGQPTQALIQVFSAAREPFRL 60

Query: 135 FMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILP 194
           F+  +  E++   F+  A               +  +L P+F +SEL  +F+IGFL+ + 
Sbjct: 61  FLEKHAHEREKRFFIRSASVVWPKEAARALHENDMIVLAPAFTLSELTDAFKIGFLLYIA 120

Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
           F++ID+I+A +++AMG+  + PT++++P K++ F
Sbjct: 121 FIVIDLIIANVLLAMGLNQVQPTNVAIPLKLLLF 154


>gi|179742375|gb|ACB86738.1| HrcR [uncultured soil bacterium]
          Length = 155

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/155 (36%), Positives = 91/155 (58%), Gaps = 2/155 (1%)

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFW 133
           +G+  VPPN+V+  LAL M+ YVM P          G++ +  +  +   A     EP  
Sbjct: 1   IGVQQVPPNVVLNGLALVMSVYVMYPVGTEMGARMQGLKDIGGSTQSMLKAADSAKEPLR 60

Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
            F+  ++R  +   FM  A  + +          ++ +++P+F +SEL  +FEIGFLI L
Sbjct: 61  EFLVKHSRPLERGFFMKTAQKALKPEQAATLTDRDFLVIVPAFTVSELSVAFEIGFLIFL 120

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
           PFL+ID++++ I+MAMGMMML PT++S+P K++ F
Sbjct: 121 PFLVIDLVISNILMAMGMMMLSPTTVSMPLKLLLF 155


>gi|179741073|gb|ACB86704.1| HrcR [Burkholderia cepacia]
          Length = 157

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 87/155 (56%), Gaps = 3/155 (1%)

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTL---DRSIEMGIQPLMNNQITETTAIQRVAEPF 132
           +G+  VPPN+V+  +A+ ++ YV++P      R++     P    +     A     EPF
Sbjct: 3   IGVQQVPPNMVLNGIAILVSAYVLAPVAIAASRNLPTDRPPANRVRRRWMQAFSAAREPF 62

Query: 133 WVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192
             F+  +  +++   F+  A         ++    +  +L P+F ++EL  +F+IGFL+ 
Sbjct: 63  RTFLEAHAHQRERRFFVRSAAMVWPKDVASELKDTDLFVLAPAFTLTELTEAFKIGFLLY 122

Query: 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227
           + F+++D+I+A +++AMG+  + PT++++PFK++ 
Sbjct: 123 VAFIVVDLIIANVLLAMGLNQVQPTNVAIPFKLLL 157


>gi|179742716|gb|ACB86743.1| HrcR [uncultured soil bacterium]
          Length = 160

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 50/156 (32%), Positives = 83/156 (53%), Gaps = 2/156 (1%)

Query: 74  TGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEM-GIQPLMNNQITETTA-IQRVAEP 131
           + +G+  VPPN+    +AL  T +VM+P      +     PL         A    V EP
Sbjct: 5   SDLGVQQVPPNMATHGIALAATMFVMAPVAHEIQQRVHDHPLEMGSTDRLQASANTVIEP 64

Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
              FM  NT    ++  +D            +    +  + +P+F++SEL+  F+IGFLI
Sbjct: 65  LQRFMTRNTDPDVIAHLLDNTQRMWPKDMADQASKSDLLLAVPAFVLSELQAGFQIGFLI 124

Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227
            +PF++ID+IV+ +++A+GM M+ P +ISLPFK++ 
Sbjct: 125 YIPFIVIDLIVSNLLLALGMQMVSPMTISLPFKLLL 160


>gi|179741780|gb|ACB86726.1| HrcR [uncultured soil bacterium]
          Length = 157

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 87/155 (56%), Gaps = 2/155 (1%)

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFW 133
           +G+  VPPN+V+  +A+ ++ Y+ +P    +++     Q   N     T  I    EPF 
Sbjct: 1   IGVQQVPPNMVLNGIAIIVSVYITAPVAFSAMQGMQANQAPGNVTQNVTAGIAAAREPFR 60

Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
            F++ + + ++   F+  A +             +  +L P+F ++EL  +F+IGFL+ +
Sbjct: 61  TFLKAHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTDAFKIGFLLYI 120

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
            F+++D+++A ++MAMG+  + PT++++P K++ F
Sbjct: 121 GFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 155


>gi|179742187|gb|ACB86736.1| HrcR [uncultured soil bacterium]
          Length = 155

 Score =  122 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 43/155 (27%), Positives = 88/155 (56%), Gaps = 2/155 (1%)

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFW 133
           +G+  VPPN+V+  +A+ ++ Y+M+P    +++     Q   N     T  I    EPF 
Sbjct: 1   IGVQQVPPNMVLNGIAIIVSVYIMAPVAFSAMQGMQANQAPGNVTQNVTAGIAAAREPFR 60

Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
            F+  + + ++   F+  A +             +  +L P+F ++EL  +F+IGFL+ +
Sbjct: 61  TFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTDAFKIGFLLYI 120

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
            F+++D+++A ++MAMG+  + PT++++PFK++ F
Sbjct: 121 GFIVVDLVIANVLMAMGLNQVQPTNVAIPFKLLLF 155


>gi|331654351|ref|ZP_08355351.1| surface presentation of antigens secretory protein [Escherichia
           coli M718]
 gi|331047733|gb|EGI19810.1| surface presentation of antigens secretory protein [Escherichia
           coli M718]
          Length = 172

 Score =  121 bits (304), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 92/165 (55%), Gaps = 4/165 (2%)

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTRE 142
           + +  +AL ++ +VM P             +  NN  +    ++     +  ++   +  
Sbjct: 1   MTLNGVALLLSMFVMMPVGKEIYNNSHNENLSFNNVASVVNFVETGMSGYKSYLIKYSEP 60

Query: 143 KDLSLFMDMAHS--SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
           + +S F  +     S  N +I  +D+I    L+P++ +SE++ +F IGF I LPF+++D+
Sbjct: 61  ELVSFFEKIQKVNGSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDL 120

Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +++++++ +GMMM+ P +IS P K+I FV +DGW++L + L+  +
Sbjct: 121 VISSVLLTLGMMMMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 165


>gi|179741593|gb|ACB86720.1| HrcR [uncultured soil bacterium]
          Length = 157

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 2/155 (1%)

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFW 133
           +G+  VPPN+V+  +A+ ++ Y+M+P    +++     Q   N     T  I    EPF 
Sbjct: 1   IGVQQVPPNMVLNGIAIIVSVYIMAPVAFSAMQGMQANQAPGNVTQNVTAGITAAREPFR 60

Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
            F+  + + ++   F+  A +             +  +L P+F ++EL  +F+IGFL+ +
Sbjct: 61  TFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTDAFKIGFLLYI 120

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
            F+++D+++A ++MAMG+  + PT++++P K++ F
Sbjct: 121 GFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 155


>gi|324119902|gb|EGC13781.1| FliP family protein [Escherichia coli E1167]
          Length = 172

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 94/165 (56%), Gaps = 4/165 (2%)

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTRE 142
           + +  +AL ++ +VM P             +  NN  +    ++     +  ++   +  
Sbjct: 1   MTLNGVALLLSMFVMMPVGKEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEP 60

Query: 143 KDLSLFMDMA--HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
           + +S F  +   +SS  N +I  +D+I    L+P++ +SE++ +F IGF I LPF+++D+
Sbjct: 61  ELVSFFEKIQKVNSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDL 120

Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +++++++ +GMMM+ P +IS P K+I FV +DGW++L + L+  +
Sbjct: 121 VISSVLLTLGMMMMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 165


>gi|179741249|gb|ACB86709.1| HrcR [uncultured soil bacterium]
          Length = 157

 Score =  121 bits (304), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 86/155 (55%), Gaps = 2/155 (1%)

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFW 133
           +G+  VPPN+V+  +A+ ++ Y+M+P    +++     Q   N     T  I     PF 
Sbjct: 1   IGVQQVPPNMVLNGIAIIVSVYIMAPVAFSAMQGMQANQAPGNVTQNVTAGIAAARVPFR 60

Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
            F+  + +  +   F+  A +             +  +L P+F ++EL  +F+IGFL+ +
Sbjct: 61  TFLEAHAQSCERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTDAFKIGFLLYI 120

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
            F+++D+++A ++MAMG+  + PT++++PFK++ F
Sbjct: 121 GFIVVDLVIANVLMAMGLNQVQPTNVAIPFKLLLF 155


>gi|179742060|gb|ACB86734.1| HrcR [uncultured soil bacterium]
          Length = 157

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 86/155 (55%), Gaps = 2/155 (1%)

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFW 133
           +G+  VPPN+V+  +A+ ++ Y+M+P    +++     Q   N     T  I    EPF 
Sbjct: 1   IGVQQVPPNMVLNGIAIIVSVYIMAPVAFSAMQGMQANQAPGNVTQNVTAGIAAAREPFR 60

Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
            F+  + + ++   F+  A +             +  +L P+F ++EL  +F+IGFL+ +
Sbjct: 61  TFLEAHAKSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTDAFKIGFLLYI 120

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
            F+++D+++A ++MAMG+    PT++++P K++ F
Sbjct: 121 GFIVVDLVIANVLMAMGLNQAQPTNVAIPLKLLLF 155


>gi|179741622|gb|ACB86721.1| HrcR [uncultured soil bacterium]
          Length = 157

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 87/155 (56%), Gaps = 2/155 (1%)

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFW 133
           +G+  VPPN+V+  +A+ ++ ++M+P    +++     Q   N     T  I    EPF 
Sbjct: 1   IGVQQVPPNMVLNGIAIIVSVHIMAPVAFSAMQGMQANQAPGNVTQNVTAGIAAAREPFR 60

Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
            F+  + + ++   F+  A +             +  +L P+F ++EL  +F+IGFL+ +
Sbjct: 61  TFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTDAFKIGFLLYI 120

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
            F+++D+++A ++MAMG+  + PT++++P K++ F
Sbjct: 121 GFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 155


>gi|331643550|ref|ZP_08344681.1| surface presentation of antigens secretory protein [Escherichia
           coli H736]
 gi|331037021|gb|EGI09245.1| surface presentation of antigens secretory protein [Escherichia
           coli H736]
          Length = 172

 Score =  120 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 94/165 (56%), Gaps = 4/165 (2%)

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTRE 142
           + +  +AL ++ +VM P             +  NN  +    ++     +  ++   +  
Sbjct: 1   MTLNGVALLLSMFVMMPVGKEIYYNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEP 60

Query: 143 KDLSLFMDMA--HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
           + ++ F  +   +SS  N +I  +D+I    L+P++ +SE++ +F IGF I LPF+++D+
Sbjct: 61  ELVNFFEKIQKVNSSEDNEEIFDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDL 120

Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +++++++ +GMMM+ P +IS P K+I FV +DGW++L + L+  +
Sbjct: 121 VISSVLLTLGMMMMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 165


>gi|323155908|gb|EFZ42075.1| type III secretion apparatus protein, YscR/HrcR family [Escherichia
           coli EPECa14]
          Length = 195

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/180 (27%), Positives = 96/180 (53%), Gaps = 4/180 (2%)

Query: 33  LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
           ++I +  +    +F +LS+ PI +++ T F +  IV  IL+  +G+  VPPN+ + S++L
Sbjct: 5   MTIGSQPIFLIIVFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSL 64

Query: 93  FMTFYVMSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
            +T ++MSP + +  +   Q  +N  +        +++  P+  F+  NT ++++  F  
Sbjct: 65  ILTMFIMSPIILQINDNISQEPINYTDSDFFQKVDEKILSPYRGFLEKNTEKENVEFFER 124

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
            A     N  I K D     IL+P+F + +L  +F+IGFL+ LPF+ I       ++ +G
Sbjct: 125 AAQKKLGNETILKKD--SLFILLPAFTMGQLEAAFKIGFLLYLPFIAIRFDHFQYLIGLG 182


>gi|225181597|ref|ZP_03735038.1| type III secretion system inner membrane P protein [Dethiobacter
           alkaliphilus AHT 1]
 gi|225167705|gb|EEG76515.1| type III secretion system inner membrane P protein [Dethiobacter
           alkaliphilus AHT 1]
          Length = 131

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/125 (35%), Positives = 68/125 (54%), Gaps = 4/125 (3%)

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
           +T F R ++V   +R  +     PPN VII LALF+TF++M+P   R  E  I P + ++
Sbjct: 1   MTSFTRIVVVLGFVRNALATQQTPPNRVIIGLALFLTFFIMAPIYSRVNETAILPSLEDE 60

Query: 119 ITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMI 178
           IT   A+   + P   FM   T EK L LF++++      T     D +   +L+P+F+I
Sbjct: 61  ITSEYALATRSPPLERFMVQQTTEKVLPLFVNLSDGERPETM----DDLPMHVLVPAFVI 116

Query: 179 SELRR 183
           SEL+ 
Sbjct: 117 SELKT 121


>gi|179741127|gb|ACB86706.1| HrcR [Burkholderia terrae]
          Length = 155

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 88/155 (56%), Gaps = 2/155 (1%)

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFW 133
           +G+  VPPN+V+  +A+ ++ Y+M+P    +++     Q   N     T  I    EPF 
Sbjct: 1   IGVQQVPPNMVLNGIAIIVSVYIMAPVAFSAMQGMQANQAPGNVTQNVTAGIAAAREPFR 60

Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
            F+  + + ++   F+  A +             +  +L P+F ++EL  +F+IGFL+ +
Sbjct: 61  TFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTDAFKIGFLLYI 120

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
            F+++++++A ++MAMG+  + PT++++PFK++ F
Sbjct: 121 GFIVVNLVIANVLMAMGLNQVQPTNVAIPFKLLLF 155


>gi|179741398|gb|ACB86714.1| HrcR [uncultured soil bacterium]
 gi|179741939|gb|ACB86730.1| HrcR [uncultured soil bacterium]
          Length = 159

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 56/158 (35%), Positives = 93/158 (58%), Gaps = 6/158 (3%)

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE-----MGIQPLMNNQITETTAIQRVAE 130
           +G+  VPPN+V+  LAL +T YVM P   R  +      G+  + ++            E
Sbjct: 3   IGVQQVPPNIVLNGLALVLTLYVMQPVGARMADAVGGANGLAGVTSSTGNMMETANLAKE 62

Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
           P   F+  ++R  + + F+  A        +  +D  ++ I +P+F+++EL  +F+IGFL
Sbjct: 63  PLREFLLKHSRPNERAFFLRTAQRVDPARSVEMSDR-DFVITVPAFVVNELSVAFQIGFL 121

Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
           I LPFL+ID++++ I++AMGMMML PT+ISLP K++ F
Sbjct: 122 IFLPFLVIDLVISNILLAMGMMMLSPTTISLPLKLLLF 159


>gi|179741982|gb|ACB86732.1| HrcR [uncultured soil bacterium]
          Length = 159

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/158 (34%), Positives = 93/158 (58%), Gaps = 6/158 (3%)

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE-----MGIQPLMNNQITETTAIQRVAE 130
           +G+  VPPN+V+  LAL +T YVM P   R  +      G+  + ++            E
Sbjct: 1   IGVQQVPPNIVLNGLALVLTLYVMQPVGARMADAVGGANGLAGVTSSTGNMMETANLAKE 60

Query: 131 PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190
           P   F+  +++  + + F+  A        +  +D  ++ I +P+F+++EL  +F+IGFL
Sbjct: 61  PLREFLLKHSQPNERAFFLRTAQRVDPARSVEMSDR-DFVITVPAFVVNELSVAFQIGFL 119

Query: 191 IILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
           I LPFL+ID++++ I++AMGMMML PT+ISLP K++ F
Sbjct: 120 IFLPFLVIDLVISNILLAMGMMMLSPTTISLPLKLLLF 157


>gi|179741717|gb|ACB86724.1| HrcR [uncultured soil bacterium]
          Length = 158

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 83/155 (53%), Gaps = 2/155 (1%)

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFW 133
           +G+  VPPN+V+  +A+ +      P    +++     Q   N     T  I    EPF 
Sbjct: 2   IGVQQVPPNMVLNGIAIIVLASPTPPVAFSAMQGKQANQAPGNVTQNVTAGIAAAREPFC 61

Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
            F+  + + ++   F+  A +             +  +L P+F ++EL  +F+IGFL+ +
Sbjct: 62  TFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTDAFKIGFLLYI 121

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
            F+++D+++A ++MAMG+  + PT++++PFK++ F
Sbjct: 122 GFIVVDLVIANVLMAMGLNQVQPTNVAIPFKLLLF 156


>gi|179742029|gb|ACB86733.1| HrcR [uncultured soil bacterium]
          Length = 157

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 2/155 (1%)

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFW 133
           +G+  VPPN+V+  +A+ ++ Y+M+P    +++     Q   N     T  I    EPF 
Sbjct: 1   IGVQQVPPNMVLNGIAIIVSVYIMAPVAFSAMQGMQANQAPGNVTQNVTAGIAAAREPFR 60

Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
            F+  + + ++   F+  A +             +  +L P+F ++EL  +F+IGFL+ +
Sbjct: 61  TFLEVHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTGAFKIGFLLYI 120

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
            F+++D+++A ++MAMG+  + PT++++P K++ F
Sbjct: 121 GFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 155


>gi|229529208|ref|ZP_04418598.1| surface presentation of antigens protein SpaP [Vibrio cholerae
           12129(1)]
 gi|229332982|gb|EEN98468.1| surface presentation of antigens protein SpaP [Vibrio cholerae
           12129(1)]
          Length = 228

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 52/197 (26%), Positives = 91/197 (46%), Gaps = 12/197 (6%)

Query: 55  LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
             I  T F ++ IV +I++  +G   +PP +V+  LA  M    + P +   IE  I+P 
Sbjct: 33  FFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNGVWPQIQPGIER-IKPY 91

Query: 115 MNNQITETTAIQ-RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT---------KN 164
            + Q  +    +     P  V M +   E        + H+  +   +T           
Sbjct: 92  FSQQKKQELNQEINNDLPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLTAIIELPFNFDK 151

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           +H  ++  I S +I +L + FE+G  + + F+ ID ++A ++  +GM ML PT IS P K
Sbjct: 152 EHDTFKYFIGS-LIYDLYQGFELGLKLYIVFVSIDFLIAVVLSGVGMTMLSPTVISTPVK 210

Query: 225 VIFFVLIDGWSLLVENL 241
           +  F   D W++L + L
Sbjct: 211 LAVFYFSDSWTILFKAL 227


>gi|254511334|ref|ZP_05123401.1| flagellar biosynthetic protein FliP [Rhodobacteraceae bacterium
           KLH11]
 gi|221535045|gb|EEE38033.1| flagellar biosynthetic protein FliP [Rhodobacteraceae bacterium
           KLH11]
          Length = 146

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 64/148 (43%), Positives = 93/148 (62%), Gaps = 3/148 (2%)

Query: 99  MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
           M P    + E GIQP++   +    A++R   PF  FM       D   F  MA      
Sbjct: 1   MEPVFSEAWEAGIQPMVEETLDVEPALERALVPFRSFMAARL---DADTFQAMAALRPDG 57

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
           T +  +      +L+PSFM+SE+ R+F+IGFLI LPFLIID++VA ++M+MGMMM+PP +
Sbjct: 58  TQMQLSPEAPLSVLMPSFMLSEIARAFQIGFLIFLPFLIIDLVVAAVLMSMGMMMVPPAT 117

Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +SLPFK+ FFV+ DGW+L+   LV+S++
Sbjct: 118 VSLPFKLAFFVIADGWALIASALVRSYV 145


>gi|229515154|ref|ZP_04404614.1| surface presentation of antigens protein SpaP [Vibrio cholerae TMA
           21]
 gi|229347859|gb|EEO12818.1| surface presentation of antigens protein SpaP [Vibrio cholerae TMA
           21]
          Length = 228

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 53/197 (26%), Positives = 91/197 (46%), Gaps = 12/197 (6%)

Query: 55  LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
             I  T F ++ IV +I++  +G   +PP +V+  LA  M    + P +   IE  I+P 
Sbjct: 33  FFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNGVWPQIQPGIER-IKPY 91

Query: 115 MNNQITETTAIQ-RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT---------KN 164
            + Q  +    +     P  V M +   E        + H+  +   +T           
Sbjct: 92  FSQQEKQELNQEINNDLPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLTAIIELPFNFDK 151

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           +H  ++  I S +I +L + FE+G  + + F+ ID ++A I+  +GM ML PT IS P K
Sbjct: 152 EHDTFKYFIGS-LIYDLYQGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVISTPVK 210

Query: 225 VIFFVLIDGWSLLVENL 241
           +  F   D W++L + L
Sbjct: 211 LAVFYFSDSWTILFKAL 227


>gi|296535008|ref|ZP_06897288.1| flagellar biosynthetic protein FliP [Roseomonas cervicalis ATCC
           49957]
 gi|296264663|gb|EFH11008.1| flagellar biosynthetic protein FliP [Roseomonas cervicalis ATCC
           49957]
          Length = 190

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 51/131 (38%), Positives = 80/131 (61%)

Query: 31  ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
              S++T IV      T+L++AP +L++ T F R ++V S+LRT +G+   PPN VI+SL
Sbjct: 58  GAQSLTTNIVGLIVATTLLALAPGILVVATAFTRIVVVLSMLRTALGLQQSPPNSVIVSL 117

Query: 91  ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
           +LF+  +VM+P L+R+     +PL++  ITE  A +R   PF  FM  N RE+DL+LF++
Sbjct: 118 SLFLAAFVMAPVLERAWNDAARPLIDGTITEEMAAERAIAPFRSFMEANVRERDLALFIE 177

Query: 151 MAHSSHRNTDI 161
           +A         
Sbjct: 178 IARWQPPPEPP 188


>gi|179741500|gb|ACB86717.1| HrcR [uncultured soil bacterium]
          Length = 157

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 86/154 (55%), Gaps = 2/154 (1%)

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFW 133
           +G+  VPPN+V+  +A+ ++ Y+M+P    +++     Q   N     T  I    EPF 
Sbjct: 1   IGVQQVPPNMVLNGIAIIVSVYIMAPVAFSAMQGMQANQAPGNVTQNVTAGIAAAREPFR 60

Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
            F+  + + ++   F+  A +             +  +L P+F ++EL  +F+IGFL+ +
Sbjct: 61  TFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTDAFKIGFLLYI 120

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227
            F+++D+++A ++MAMG+  + PT++++P K++ 
Sbjct: 121 GFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLL 154


>gi|254285292|ref|ZP_04960257.1| Flagellar biosynthesis pathway, component FliP [Vibrio cholerae
           AM-19226]
 gi|71480611|gb|AAZ32233.1| VcsR2 [Vibrio cholerae non-O1/non-O139]
 gi|150424564|gb|EDN16500.1| Flagellar biosynthesis pathway, component FliP [Vibrio cholerae
           AM-19226]
          Length = 224

 Score =  118 bits (297), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 53/197 (26%), Positives = 91/197 (46%), Gaps = 12/197 (6%)

Query: 55  LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
             I  T F ++ IV +I++  +G   +PP +V+  LA  M    + P +   IE  I+P 
Sbjct: 29  FFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNGVWPQIQPGIER-IKPY 87

Query: 115 MNNQITETTAIQ-RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDIT---------KN 164
            + Q  +    +     P  V M +   E        + H+  +   +T           
Sbjct: 88  FSQQEKQELNQEINNDLPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLTAIIELPFNFDK 147

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           +H  ++  I S +I +L + FE+G  + + F+ ID ++A I+  +GM ML PT IS P K
Sbjct: 148 EHDTFKYFIGS-LIYDLYQGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVISTPVK 206

Query: 225 VIFFVLIDGWSLLVENL 241
           +  F   D W++L + L
Sbjct: 207 LAVFYFSDSWTILFKAL 223


>gi|179741438|gb|ACB86715.1| HrcR [uncultured soil bacterium]
          Length = 157

 Score =  118 bits (295), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 85/155 (54%), Gaps = 2/155 (1%)

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFW 133
           +G+  VPPN+V+  +A+ ++  + +P    +++     Q   N     T  I    EPF 
Sbjct: 1   IGVQQVPPNMVLNGIAIIVSVSLPAPVAFSAMQGMQANQAPGNVTQNVTAGIAAAREPFR 60

Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
            F+  + + ++   F+  A +             +  +L P+F ++EL  +F+IGFL+ +
Sbjct: 61  TFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTDAFKIGFLLYI 120

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
            F+++D+++A ++MAMG+  + PT++++P K++ F
Sbjct: 121 GFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 155


>gi|213613057|ref|ZP_03370883.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 158

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 56/158 (35%), Positives = 90/158 (56%), Gaps = 3/158 (1%)

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147
            AL ++ ++M PTL    E    P+         +    +   P+  F++ N+ EK+ + 
Sbjct: 1   FALVLSLFIMGPTLLAVKER-WHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANY 59

Query: 148 FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
           F ++   +       K       ILIP+F +S+L ++F IG LI LPFL ID++++ I++
Sbjct: 60  FRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILL 119

Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           AMGMMM+ P +ISLPFK++ F+L  GW L +  LV+SF
Sbjct: 120 AMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF 157


>gi|179742748|gb|ACB86744.1| HrcR [uncultured soil bacterium]
          Length = 158

 Score =  117 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 85/159 (53%), Gaps = 5/159 (3%)

Query: 78  MGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ-ITETTAIQRVAEPFWVFM 136
           +  VPP  V+  +A+ ++ ++M+P    ++            +     +    EPF VF+
Sbjct: 1   VQQVPPTSVLNGVAIMVSCFIMAPVGMEAMHRAQLSSDAGSGMQVMPLLDAAREPFRVFL 60

Query: 137 RNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFL 196
           + +  E++ + F+  A          +    +  +L P+F +SEL  +F++GFL+ L F+
Sbjct: 61  KRHASEREKAFFLRSAREIWPPERAAELKQDDLIVLAPAFTLSELTAAFKMGFLLYLAFI 120

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235
           +ID+++A+++MA+G+  + PT +++P +++ F    GW 
Sbjct: 121 VIDLVIASVLMALGLSQVDPTDVAIPLELLLF----GWG 155


>gi|293416108|ref|ZP_06658748.1| hypothetical protein ECDG_03710 [Escherichia coli B185]
 gi|291432297|gb|EFF05279.1| hypothetical protein ECDG_03710 [Escherichia coli B185]
          Length = 172

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 94/165 (56%), Gaps = 4/165 (2%)

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQP--LMNNQITETTAIQRVAEPFWVFMRNNTRE 142
           + +  +AL ++ +VM P                NN ++    ++     +  ++   +  
Sbjct: 1   MTLNGVALLLSMFVMMPVGKEIYYNSQNENLSFNNVVSVVNFVETGMSGYKSYLIKYSEP 60

Query: 143 KDLSLFMDMA--HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
           + +S F  +   +SS  N +I  +D+I    L+P++ +SE++ +F IGF I LPF+++D+
Sbjct: 61  ELVSFFEKIQKVNSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDL 120

Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +++++++ +GMMM+ P +IS P K+I FV +DGW++L + L+  +
Sbjct: 121 VISSVLLTLGMMMMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 165


>gi|255523692|ref|ZP_05390658.1| type III secretion system inner membrane P protein [Clostridium
           carboxidivorans P7]
 gi|255512561|gb|EET88835.1| type III secretion system inner membrane P protein [Clostridium
           carboxidivorans P7]
          Length = 164

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 4/147 (2%)

Query: 6   FFALFLVTPELVFAKSSLHDVMNIPADLSISTWI----VRTFGIFTILSIAPILLIMVTC 61
            F +F  +      ++     +NI  D + +       ++   + TIL+I P  ++M+T 
Sbjct: 18  IFLMFAASKVYAAPEAFPIPKVNISVDNASTPQQYVGNIKLLIMLTILTILPSFIMMMTS 77

Query: 62  FPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE 121
           F R I+VF  LR  MG    PPN ++I LALF+T ++M P   +     IQP M N+IT+
Sbjct: 78  FVRIIVVFGFLRGAMGTQQSPPNTILIGLALFLTVFIMQPVYSKVNTNAIQPYMQNKITQ 137

Query: 122 TTAIQRVAEPFWVFMRNNTREKDLSLF 148
             AI   A+P   FM   T +KD    
Sbjct: 138 EQAIDEGAKPLRQFMLKYTYKKDFHYL 164


>gi|179741104|gb|ACB86705.1| HrcR [Pseudomonas fluorescens]
          Length = 162

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/155 (33%), Positives = 86/155 (55%), Gaps = 2/155 (1%)

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQP--LMNNQITETTAIQRVAEPFW 133
           +G+  VPP++ I  +AL  T ++M+P   +  E        M+N  T         EP  
Sbjct: 2   IGVQQVPPSMAINGIALAATLFIMAPVGYQVAENLKNAPLDMSNVQTLQQTGLVAIEPLR 61

Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
            FM+ N     L+   + +            +  +  +LIPSF++S+L+  FEIGFLI +
Sbjct: 62  AFMKRNIDPDVLTHMHESSARMWPPEMAQSTEREDLILLIPSFVLSQLQAGFEIGFLIYI 121

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
           PF++ID+IV+ +++A+GM M+ P +ISLPFK++ F
Sbjct: 122 PFIVIDLIVSNLLLALGMQMVSPMTISLPFKLLLF 156


>gi|179741157|gb|ACB86707.1| HrcR [Burkholderia terrae]
          Length = 154

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 84/151 (55%), Gaps = 2/151 (1%)

Query: 80  SVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFWVFMR 137
            VPPN+V+  +A+ ++ Y+M+P    +++     Q   N     T  I    EPF  F+ 
Sbjct: 4   QVPPNMVLNGIAIIVSVYIMAPVAFSAMQGMQANQAPGNVTQNVTAGIAAAREPFRTFLE 63

Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197
            + + ++   F+  A +             +  +L P+F ++EL  +F+IGFL+ + F++
Sbjct: 64  AHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTDAFKIGFLLYIGFIV 123

Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
           +D+++A ++MAMG+  + PT++++P K++ F
Sbjct: 124 VDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 154


>gi|179741693|gb|ACB86723.1| HrcR [uncultured soil bacterium]
          Length = 157

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 86/155 (55%), Gaps = 2/155 (1%)

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFW 133
           +G+  VP N+V+  +A+ ++ Y+M+P    +++     Q   N     T  I    EPF 
Sbjct: 1   IGVQQVPLNMVLNGIAIIVSVYIMAPVAFSAMQGMQANQAPGNVTQNVTAGIAAAREPFR 60

Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
            F+  + + ++   F+  A +             +  +L P+F ++EL  +F+IGFL+ +
Sbjct: 61  TFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTDAFKIGFLLYI 120

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
            F+++D+++A ++MAMG+  + PT++++P K++ F
Sbjct: 121 GFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 155


>gi|270488967|ref|ZP_06206041.1| FliP family protein [Yersinia pestis KIM D27]
 gi|270337471|gb|EFA48248.1| FliP family protein [Yersinia pestis KIM D27]
          Length = 169

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/154 (27%), Positives = 77/154 (50%), Gaps = 2/154 (1%)

Query: 41  RTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMS 100
           +   +  +LS+ P+L++M T F +  +VFS+LR  +G+  VPPN+ I  LAL +T ++M+
Sbjct: 9   QLIALLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLALVLTIFIMA 68

Query: 101 PTLDRSIEMGIQPLMNNQITET--TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158
           P             ++N I        Q    P+  F++ NT  + ++ F D+  +    
Sbjct: 69  PVGLDVQARLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVTFFNDIVQNKWPE 128

Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192
                       IL+P+F +S+L  +F+IG L+ 
Sbjct: 129 RYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLF 162


>gi|179741659|gb|ACB86722.1| HrcR [uncultured soil bacterium]
          Length = 157

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 84/155 (54%), Gaps = 2/155 (1%)

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFW 133
           +G+  VP N+V+  +A+ ++  + +P    +++     Q   N     T  I    EPF 
Sbjct: 1   IGVQQVPLNMVLNGIAIIVSVSITAPVAFSAMQGMQANQAPGNVTQNVTAGIAAAREPFR 60

Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
            F+  + + ++   F+  A +             +  +L P+F ++EL  +F+IGFL+ +
Sbjct: 61  TFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTDAFKIGFLLYI 120

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
            F+++D+++A ++MAMG+  + PT++++P K++ F
Sbjct: 121 GFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 155


>gi|262274290|ref|ZP_06052101.1| surface presentation of antigens protein SpaP [Grimontia hollisae
           CIP 101886]
 gi|262220853|gb|EEY72167.1| surface presentation of antigens protein SpaP [Grimontia hollisae
           CIP 101886]
          Length = 224

 Score =  115 bits (289), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 52/196 (26%), Positives = 91/196 (46%), Gaps = 12/196 (6%)

Query: 56  LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115
            I  + F ++ IV +I++  +G   +PP +V+  LA  M    + P L   IE  ++P  
Sbjct: 30  FICFSGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNSIWPQLQPGIER-VEPYF 88

Query: 116 NNQITETTAIQRVAE-PFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN---------D 165
           + Q  E    Q   + P  V M              + ++  +   +T+          +
Sbjct: 89  SQQTQEELNKQIDQDLPKGVTMYTLVSHWAEFFPEVLENAKQKTEKLTEVITLPFNFDQE 148

Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225
           H  ++  I S +I +L + FE+G  + + F+ ID ++A I+  +GM ML PT IS P K+
Sbjct: 149 HDTFKYFIGS-LIWDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVISTPVKL 207

Query: 226 IFFVLIDGWSLLVENL 241
             F   D W++L + L
Sbjct: 208 AVFYFSDSWTILFKAL 223


>gi|289805125|ref|ZP_06535754.1| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 117

 Score =  115 bits (288), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 57/119 (47%), Positives = 88/119 (73%), Gaps = 4/119 (3%)

Query: 127 RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFE 186
           + A+P   FM   TRE DL+LF  +A+S      +   + +  RIL+P+++ SEL+ +F+
Sbjct: 1   KGAQPLRAFMLRQTREADLALFARLANSG----PLQGPEAVPMRILLPAYVTSELKTAFQ 56

Query: 187 IGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           IGF I +PFLIID+++A+++MA+GMMM+PP +I+LPFK++ FVL+DGW LLV +L +SF
Sbjct: 57  IGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 115


>gi|179742484|gb|ACB86740.1| HrcR [uncultured soil bacterium]
          Length = 153

 Score =  114 bits (286), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 38/149 (25%), Positives = 81/149 (54%), Gaps = 2/149 (1%)

Query: 81  VPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRN 138
             PN+V+  +A+ ++ Y+M+P   ++ +      ++ + T+          EPF +F+  
Sbjct: 5   GTPNMVLNGIAILVSLYIMAPIGMQAAQSLQGQQIDGRPTQALIQVFSAAREPFRLFLEK 64

Query: 139 NTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLII 198
           +  E+    F+  A               +  +L P+F +SEL  +F+IGFL+ + F++I
Sbjct: 65  HAHERGKRFFIRSASVVWPKEAARALHENDMIVLAPAFTLSELTDAFKIGFLLYIAFIVI 124

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIF 227
           D+I+A +++AMG+  + PT++++P K++ 
Sbjct: 125 DLIIANVLLAMGLNQVQPTNVAIPLKLLL 153


>gi|520562|gb|AAA67717.1| FLIP [Sinorhizobium meliloti]
          Length = 136

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 70/136 (51%), Positives = 102/136 (75%), Gaps = 1/136 (0%)

Query: 1   MIRY-CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
           M+R+  F    +    +  A+S   D++N P D S+++WI+RTFG+ T+LS+AP +LIMV
Sbjct: 1   MLRFATFIIAMMAMSGIAGAQSFPADILNTPVDGSVASWIIRTFGLLTVLSVAPGILIMV 60

Query: 60  TCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQI 119
           T FPRF+I F+ILR+GMG+ + P N++++SLALFMTFYVM+PT DR+   GI PL+ N+I
Sbjct: 61  TSFPRFVIAFAILRSGMGLATTPSNMIMVSLALFMTFYVMAPTFDRAWRDGIDPLLKNEI 120

Query: 120 TETTAIQRVAEPFWVF 135
           +ET A+QR++EPF  F
Sbjct: 121 SETDAMQRMSEPFREF 136


>gi|313056277|dbj|BAJ39856.1| putative type III secretion system apparatus protein VscR2 [Vibrio
           mimicus]
          Length = 243

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 91/197 (46%), Gaps = 12/197 (6%)

Query: 55  LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
             I  T F ++ IV +I++  +G   +PP +V+  LA  M    + P +   IE  ++P 
Sbjct: 48  FFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNAVWPQIQPGIER-VKPY 106

Query: 115 MNNQITETTAIQ-RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK---------N 164
            + Q  +          P  V M +   E        + H+  +   +++          
Sbjct: 107 FSQQEKQELNQDIDNDMPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLSEVIELPFNFDK 166

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           +H  ++  + S +I +L + FE+G  + + F+ ID ++A I+  +GM ML PT IS P K
Sbjct: 167 EHDTFKYFVGS-LIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVISTPVK 225

Query: 225 VIFFVLIDGWSLLVENL 241
           +  F   D W++L + L
Sbjct: 226 LAVFYFSDSWTILFKAL 242


>gi|323183415|gb|EFZ68812.1| putative type III secretion apparatus integral membrane protein
           component [Escherichia coli 1357]
          Length = 165

 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/158 (27%), Positives = 90/158 (56%), Gaps = 4/158 (2%)

Query: 92  LFMTFYVMSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
           + ++ +VM P             +  NN  +    ++     +  ++   +  + +S F 
Sbjct: 1   MLLSMFVMMPVGKEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFE 60

Query: 150 DMA--HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
            +   +SS  N +I  +D+I    L+P++ +SE++ +F IGF I LPF+++D++++++++
Sbjct: 61  KIQKVNSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLL 120

Query: 208 AMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            +GMMM+ P +IS P K+I FV +DGW++L + L+  +
Sbjct: 121 TLGMMMMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 158


>gi|308126175|ref|ZP_05908255.2| FliP family protein [Vibrio parahaemolyticus AQ4037]
 gi|308107367|gb|EFO44907.1| FliP family protein [Vibrio parahaemolyticus AQ4037]
          Length = 278

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/202 (24%), Positives = 92/202 (45%), Gaps = 17/202 (8%)

Query: 55  LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
             I  + F ++ IV +I++  +G   +PP +V+  LA  M    + P +   IE  ++P 
Sbjct: 78  FFICFSGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNSVWPEVKPGIER-VKPY 136

Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDL-----SLFMDMAHSSHRNTDIT------- 162
            ++Q     ++   A      +  N     L       F ++  ++   T+         
Sbjct: 137 FSSQHRLEDSLDTSASVSSDELPKNVTMFTLVSNLFEFFPELLKTAEDKTNKLTSLIDIP 196

Query: 163 ---KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                ++  ++  I S +I +L + FE+G  + + F+ ID ++A I+  +GM ML PT I
Sbjct: 197 LNFDEENQTFKFFIGS-LIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVI 255

Query: 220 SLPFKVIFFVLIDGWSLLVENL 241
           S P K+  F   D W++L + L
Sbjct: 256 STPVKLAVFYFSDSWTILFKAL 277


>gi|313056253|dbj|BAJ39844.1| putative type III secretion system apparatus protein VscR2 [Vibrio
           mimicus]
          Length = 243

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 91/197 (46%), Gaps = 12/197 (6%)

Query: 55  LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
             I  T F ++ IV +I++  +G   +PP +V+  LA  M    + P +   IE  ++P 
Sbjct: 48  FFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNAVWPQVQPGIER-VKPY 106

Query: 115 MNNQITETTAIQ-RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK---------N 164
            + Q  +          P  V M +   E        + H+  +   +++          
Sbjct: 107 FSQQEKQELNQDVDNDMPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLSEVIELPFNFDK 166

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           +H  ++  + S +I +L + FE+G  + + F+ ID ++A I+  +GM ML PT IS P K
Sbjct: 167 EHDTFKYFVGS-LIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVISTPVK 225

Query: 225 VIFFVLIDGWSLLVENL 241
           +  F   D W++L + L
Sbjct: 226 LAVFYFSDSWTILFKAL 242


>gi|313056235|dbj|BAJ39835.1| putative type III secretion system apparatus protein VscR2 [Vibrio
           mimicus]
 gi|313056265|dbj|BAJ39850.1| putative type III secretion system apparatus protein VscR2 [Vibrio
           mimicus]
          Length = 243

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 91/197 (46%), Gaps = 12/197 (6%)

Query: 55  LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
             I  T F ++ IV +I++  +G   +PP +V+  LA  M    + P +   IE  ++P 
Sbjct: 48  FFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNAVWPQIQPGIER-VKPY 106

Query: 115 MNNQITETTAIQ-RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK---------N 164
            + Q  +          P  V M +   E        + H+  +   +++          
Sbjct: 107 FSQQEKQELNQDFDNDMPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLSEVIELPFNFDK 166

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           DH  ++  + S +I +L + FE+G  + + F+ ID ++A I+  +GM ML PT IS P K
Sbjct: 167 DHDTFKYFVAS-LIYDLYKGFELGLKLYIIFVSIDFLIAVILSGVGMTMLSPTVISTPVK 225

Query: 225 VIFFVLIDGWSLLVENL 241
           +  F   D W++L + L
Sbjct: 226 LAVFYFSDSWTILFKAL 242


>gi|328469627|gb|EGF40563.1| type III secretion system protein YscR [Vibrio parahaemolyticus
           10329]
          Length = 229

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 48/201 (23%), Positives = 89/201 (44%), Gaps = 15/201 (7%)

Query: 55  LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
             I  + F ++ IV +I++  +G   +PP +V+  LA  M    + P +   IE  ++P 
Sbjct: 29  FFICFSGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNSVWPEVKPGIER-VKPY 87

Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDL-----SLFMDMAHSSHRNTDITKND-HIE 168
            ++Q     +++  A      +  N     L       F ++   +   T+   ++  I 
Sbjct: 88  FSSQHRLEDSLEPSASVSSEELPKNVTMFTLVSNLFEFFPEVLKIAEDKTNKLTSEIDIP 147

Query: 169 YRI--------LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSIS 220
                           +I +L + FE+G  + + F+ ID ++A I+  +GM ML PT IS
Sbjct: 148 LHFDEENQTFKFFIGSLIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVIS 207

Query: 221 LPFKVIFFVLIDGWSLLVENL 241
            P K+  F   D W++L + L
Sbjct: 208 TPVKLAVFYFSDSWTILFKAL 228


>gi|313056229|dbj|BAJ39832.1| putative type III secretion system apparatus protein VscR2 [Vibrio
           mimicus]
 gi|313056247|dbj|BAJ39841.1| putative type III secretion system apparatus protein VscR2 [Vibrio
           mimicus]
 gi|313056259|dbj|BAJ39847.1| putative type III secretion system apparatus protein VscR2 [Vibrio
           mimicus]
 gi|313056271|dbj|BAJ39853.1| putative type III secretion system apparatus protein VscR2 [Vibrio
           mimicus]
          Length = 243

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 91/197 (46%), Gaps = 12/197 (6%)

Query: 55  LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
             I  T F ++ IV +I++  +G   +PP +V+  LA  M    + P +   IE  ++P 
Sbjct: 48  FFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNAVWPQIQPGIER-VKPY 106

Query: 115 MNNQITETTAIQ-RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK---------N 164
            + Q  +          P  V M +   E        + H+  +   +++          
Sbjct: 107 FSQQEKQELNQDVDNDMPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLSEVIELPFNFDK 166

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           +H  ++  + S +I +L + FE+G  + + F+ ID ++A I+  +GM ML PT IS P K
Sbjct: 167 EHDTFKYFVGS-LIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVISTPVK 225

Query: 225 VIFFVLIDGWSLLVENL 241
           +  F   D W++L + L
Sbjct: 226 LAVFYFSDSWTILFKAL 242


>gi|28901197|ref|NP_800852.1| type III secretion system protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|28809710|dbj|BAC62685.1| putative Type III secretion protein Spa24 [Vibrio parahaemolyticus
           RIMD 2210633]
          Length = 243

 Score =  113 bits (282), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 91/197 (46%), Gaps = 12/197 (6%)

Query: 55  LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
             I  T F ++ IV +I++  +G   +PP +V+  LA  M    + P +   IE  ++P 
Sbjct: 48  FFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNAVWPQIQPGIER-VKPY 106

Query: 115 MNNQITETTAIQ-RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK---------N 164
            + Q  +          P  V M +   E        + H+  +   +++          
Sbjct: 107 FSQQEKQELNQDVDNDMPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLSEVIELPFNFDK 166

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           +H  ++  + S +I +L + FE+G  + + F+ ID ++A I+  +GM ML PT IS P K
Sbjct: 167 EHDTFKYFVGS-LIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVISTPVK 225

Query: 225 VIFFVLIDGWSLLVENL 241
           +  F   D W++L + L
Sbjct: 226 LAVFYFSDSWTILFKAL 242


>gi|158834403|gb|ABW81996.1| type III secretion system inner membrane component [Candidatus
           Hamiltonella defensa]
          Length = 155

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 81/156 (51%), Gaps = 5/156 (3%)

Query: 56  LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115
           +   TC+ +F IVF ++R  +G+  +P N+ +  +AL +  +VM P +    E G +   
Sbjct: 1   IASGTCYIKFSIVFVMVRNALGLQQIPSNMTLNGVALLLASFVMMPIVKNIYE-GYKNAQ 59

Query: 116 NNQITETTAIQRVAEPFWVFMRNNTREKDLSL--FMDMAHSSHRNTDITKNDH--IEYRI 171
            +    ++ I+ V      +     +  D  L  F + A S  +  D    +        
Sbjct: 60  FDVRNLSSVIEFVENGLDGYRSYLVKYADPELTQFFEKAASDRKEEDFAGAEEEKPSIFA 119

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
           L+P++ +SE++ +F+IGF I LPF+++D+++++I++
Sbjct: 120 LLPAYALSEIKSAFKIGFYIYLPFVVVDLLISSILL 155


>gi|313056241|dbj|BAJ39838.1| putative type III secretion system apparatus protein VscR2 [Vibrio
           mimicus]
          Length = 229

 Score =  112 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 48/202 (23%), Positives = 91/202 (45%), Gaps = 17/202 (8%)

Query: 55  LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
             I  + F ++ IV +I++  +G   +PP +V+  LA  M    + P +   +E  ++P 
Sbjct: 29  FFICFSGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNSVWPEVKPGLER-VKPY 87

Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDL-----SLFMDMAHSSHRNTDIT------- 162
            ++Q     ++   A      +  N     L       F ++  ++   T+         
Sbjct: 88  FSSQHRLEDSLDTSASVSSEELPKNVTMFTLVSNLFDFFPELLKTAEDKTNKLTSLIEIP 147

Query: 163 ---KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                +   ++  I S +I +L + FE+G  + + F+ ID ++A I+  +GM ML PT I
Sbjct: 148 LNFDEEDQTFKFFIGS-LIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVI 206

Query: 220 SLPFKVIFFVLIDGWSLLVENL 241
           S P K+  F   D W++L + L
Sbjct: 207 STPVKLAVFYFSDSWTILFKAL 228


>gi|260362756|ref|ZP_05775625.1| type III secretion system protein [Vibrio parahaemolyticus K5030]
 gi|260880044|ref|ZP_05892399.1| type III secretion system protein [Vibrio parahaemolyticus AN-5034]
 gi|260895161|ref|ZP_05903657.1| type III secretion system protein [Vibrio parahaemolyticus
           Peru-466]
 gi|308085658|gb|EFO35353.1| type III secretion system protein [Vibrio parahaemolyticus
           Peru-466]
 gi|308092712|gb|EFO42407.1| type III secretion system protein [Vibrio parahaemolyticus AN-5034]
 gi|308111991|gb|EFO49531.1| type III secretion system protein [Vibrio parahaemolyticus K5030]
          Length = 224

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 91/197 (46%), Gaps = 12/197 (6%)

Query: 55  LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
             I  T F ++ IV +I++  +G   +PP +V+  LA  M    + P +   IE  ++P 
Sbjct: 29  FFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNAVWPQIQPGIER-VKPY 87

Query: 115 MNNQITETTAIQ-RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK---------N 164
            + Q  +          P  V M +   E        + H+  +   +++          
Sbjct: 88  FSQQEKQELNQDVDNDMPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLSEVIELPFNFDK 147

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           +H  ++  + S +I +L + FE+G  + + F+ ID ++A I+  +GM ML PT IS P K
Sbjct: 148 EHDTFKYFVGS-LIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVISTPVK 206

Query: 225 VIFFVLIDGWSLLVENL 241
           +  F   D W++L + L
Sbjct: 207 LAVFYFSDSWTILFKAL 223


>gi|153836107|ref|ZP_01988774.1| VcsR2 [Vibrio parahaemolyticus AQ3810]
 gi|149750861|gb|EDM61606.1| VcsR2 [Vibrio parahaemolyticus AQ3810]
          Length = 224

 Score =  112 bits (280), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 91/197 (46%), Gaps = 12/197 (6%)

Query: 55  LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
             I  T F ++ IV +I++  +G   +PP +V+  LA  M    + P +   IE  ++P 
Sbjct: 29  FFICFTGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNAVWPQIQPGIER-VKPY 87

Query: 115 MNNQITETTAIQ-RVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITK---------N 164
            + Q  +          P  V M +   E        + H+  +   +++          
Sbjct: 88  FSQQEKQELNRDVDNDMPKNVTMYSLVSEWSTFFPELLEHAKQKTDKLSEVIELSFNFDK 147

Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
           +H  ++  + S +I +L + FE+G  + + F+ ID ++A I+  +GM ML PT IS P K
Sbjct: 148 EHDTFKYFVGS-LIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVISTPVK 206

Query: 225 VIFFVLIDGWSLLVENL 241
           +  F   D W++L + L
Sbjct: 207 LAVFYFSDSWTILFKAL 223


>gi|221271465|dbj|BAH15017.1| putative type III secretion system apparatus protein VscR2 [Vibrio
           parahaemolyticus]
          Length = 229

 Score =  112 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 49/202 (24%), Positives = 92/202 (45%), Gaps = 17/202 (8%)

Query: 55  LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
             I  + F ++ IV +I++  +G   +PP +V+  LA  M    + P +   IE  ++P 
Sbjct: 29  FFICFSGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNSVWPEVKPGIER-VKPY 87

Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDL-----SLFMDMAHSSHRNTDIT------- 162
            ++Q     ++   A      +  N     L       F ++  ++   T+         
Sbjct: 88  FSSQYRLEDSLDPSASVSSEELPKNVTMFTLVSNLFEFFPELLKTAEDKTNKLTSLIDIP 147

Query: 163 ---KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                ++  ++  I S +I +L + FE+G  + + F+ ID ++A I+  +GM ML PT I
Sbjct: 148 LNFDEENQTFKFFIGS-LIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGMTMLSPTVI 206

Query: 220 SLPFKVIFFVLIDGWSLLVENL 241
           S P K+  F   D W++L + L
Sbjct: 207 STPVKLAVFYFSDSWTILFKAL 228


>gi|158834391|gb|ABW81990.1| type III secretion system inner membrane component [Candidatus
           Hamiltonella defensa]
 gi|158834393|gb|ABW81991.1| type III secretion system inner membrane component [Candidatus
           Hamiltonella defensa]
 gi|158834395|gb|ABW81992.1| type III secretion system inner membrane component [Candidatus
           Hamiltonella defensa]
 gi|158834397|gb|ABW81993.1| type III secretion system inner membrane component [Candidatus
           Hamiltonella defensa]
 gi|158834399|gb|ABW81994.1| type III secretion system inner membrane component [Candidatus
           Hamiltonella defensa]
 gi|158834405|gb|ABW81997.1| type III secretion system inner membrane component [Candidatus
           Hamiltonella defensa]
 gi|158834407|gb|ABW81998.1| type III secretion system inner membrane component [Candidatus
           Hamiltonella defensa]
 gi|158834423|gb|ABW82005.1| type III secretion system inner membrane component [Candidatus
           Hamiltonella defensa]
 gi|158834430|gb|ABW82008.1| type III secretion system inner membrane component [Candidatus
           Hamiltonella defensa]
          Length = 155

 Score =  112 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 81/156 (51%), Gaps = 5/156 (3%)

Query: 56  LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115
           +   TC+ +F IVF ++R  +G+  +P N+ +  +AL +  +VM P +    E G +   
Sbjct: 1   IASGTCYIKFSIVFVMVRNALGLQQIPSNMTLNGVALLLASFVMMPIVKNIYE-GHKNAQ 59

Query: 116 NNQITETTAIQRVAEPFWVFMRNNTREKDLSL--FMDMAHSSHRNTDITKNDH--IEYRI 171
            +    ++ I+ V      +     +  D  L  F + A S  +  D    +        
Sbjct: 60  FDVRNLSSVIEFVENGLDGYRSYLVKYADPELTQFFEKAASDRKEEDFAGAEEEKPSIFA 119

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
           L+P++ +SE++ +F+IGF I LPF+++D+++++I++
Sbjct: 120 LLPAYALSEIKSAFKIGFYIYLPFVVVDLLISSILL 155


>gi|158834401|gb|ABW81995.1| type III secretion system inner membrane component [Candidatus
           Hamiltonella defensa]
 gi|158834409|gb|ABW81999.1| type III secretion system inner membrane component [Candidatus
           Hamiltonella defensa]
 gi|158834411|gb|ABW82000.1| type III secretion system inner membrane component [Candidatus
           Hamiltonella defensa]
 gi|158834413|gb|ABW82001.1| type III secretion system inner membrane component [Candidatus
           Hamiltonella defensa]
 gi|158834415|gb|ABW82002.1| type III secretion system inner membrane component [Candidatus
           Hamiltonella defensa]
 gi|158834418|gb|ABW82003.1| type III secretion system inner membrane component [Candidatus
           Hamiltonella defensa]
 gi|158834420|gb|ABW82004.1| type III secretion system inner membrane component [Candidatus
           Hamiltonella defensa]
 gi|158834425|gb|ABW82006.1| type III secretion system inner membrane component [Candidatus
           Hamiltonella defensa]
 gi|158834427|gb|ABW82007.1| type III secretion system inner membrane component [Candidatus
           Hamiltonella defensa]
          Length = 155

 Score =  111 bits (278), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 82/156 (52%), Gaps = 5/156 (3%)

Query: 56  LIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115
           +   TC+ +F IVF ++R  +G+  +P N+ +  +AL +  +VM P +    E G +   
Sbjct: 1   IASGTCYIKFSIVFVMVRNALGLQQIPSNMTLNGVALLLASFVMMPIVKNIYE-GHKNAQ 59

Query: 116 NNQITETTAIQRVAEPFWVFMRNNTREKDLSL--FMDMAHSSHRNTDI--TKNDHIEYRI 171
            +    ++ I+ V      +     +  D  L  F + A S  +  D    + +      
Sbjct: 60  FDVRNLSSVIEFVENGLDGYRSYLVKYADPELTQFFEKAASDRKEEDFVGAEEEKPSIFA 119

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVM 207
           L+P++ +SE++ +F+IGF I LPF+++D+++++I++
Sbjct: 120 LLPAYALSEIKSAFKIGFYIYLPFVVVDLLISSILL 155


>gi|153212098|ref|ZP_01947915.1| VcsR2 [Vibrio cholerae 1587]
 gi|153827997|ref|ZP_01980664.1| VcsR2 [Vibrio cholerae 623-39]
 gi|124116894|gb|EAY35714.1| VcsR2 [Vibrio cholerae 1587]
 gi|148876578|gb|EDL74713.1| VcsR2 [Vibrio cholerae 623-39]
          Length = 229

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 48/202 (23%), Positives = 92/202 (45%), Gaps = 17/202 (8%)

Query: 55  LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
             I  + F ++ IV +I++  +G   +PP +V+  LA  M    + P +   +E  ++P 
Sbjct: 29  FFICFSGFVKYSIVLNIIKNAVGTQQIPPAIVVNLLAALMALNSVWPEVKPGLER-VKPY 87

Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDL-----SLFMDMAHSSHRNTDIT------- 162
            ++Q     +I   A      +  N     L       F ++  ++   T+         
Sbjct: 88  FSSQHRLEDSIDTSASISSEELPKNVTMFTLVSNLFEFFPELLKNAEDKTNKLTSLIEIP 147

Query: 163 ---KNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSI 219
                ++  ++  I S +I +L + FE+G  + + F+ ID ++A I+  +G+ ML PT I
Sbjct: 148 LSFDEENQTFKFFIGS-LIYDLYKGFELGLKLYIVFVSIDFLIAVILSGVGITMLSPTVI 206

Query: 220 SLPFKVIFFVLIDGWSLLVENL 241
           S P K+  F   D W++L + L
Sbjct: 207 STPVKLAVFYFSDSWTILFKAL 228


>gi|327251616|gb|EGE63302.1| putative type III secretion apparatus integral membrane protein
           component [Escherichia coli STEC_7v]
          Length = 158

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 85/151 (56%), Gaps = 4/151 (2%)

Query: 99  MSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA--HS 154
           M P             +  NN  +    ++     +  ++   +  + +S F  +   +S
Sbjct: 1   MMPVGKEIYNNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQKVNS 60

Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
           S  N +I  +++I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMMM+
Sbjct: 61  SEDNEEIIDDENISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMMMM 120

Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            P +IS P K+I FV +DGW++L + L+  +
Sbjct: 121 SPVTISTPIKLILFVAMDGWTMLSKGLILQY 151


>gi|213027551|ref|ZP_03341998.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 170

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 89/166 (53%), Gaps = 9/166 (5%)

Query: 90  LALFMTFYVMSPTLDRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSL 147
           +AL ++ +VM P +  +           N+  + +  +    + +  ++   +  + +  
Sbjct: 1   VALLLSMFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLIKYSDRELVQF 60

Query: 148 FMDMAHSSHRNT-------DITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDM 200
           F +                D  + +      L+P++ +SE++ +F+IGF + LPF+++D+
Sbjct: 61  FENAQLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYLYLPFVVVDL 120

Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +V+++++A+GMMM+ P +IS P K++ FV +DGW+LL + L+  ++
Sbjct: 121 VVSSVLLALGMMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQYM 166


>gi|320189199|gb|EFW63858.1| surface presentation of antigens protein SpaP [Escherichia coli
           O157:H7 str. EC1212]
 gi|326339060|gb|EGD62875.1| surface presentation of antigens protein SpaP [Escherichia coli
           O157:H7 str. 1044]
 gi|326343059|gb|EGD66827.1| surface presentation of antigens protein SpaP [Escherichia coli
           O157:H7 str. 1125]
          Length = 158

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/151 (27%), Positives = 85/151 (56%), Gaps = 4/151 (2%)

Query: 99  MSPTLDRSIEMGIQPLM--NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMA--HS 154
           M P             +  NN  +    ++     +  ++   +  + +S F  +   +S
Sbjct: 1   MMPVGKEIYYNSQNENLSFNNVASVVNFVETGMSGYKSYLIKYSEPELVSFFEKIQKVNS 60

Query: 155 SHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
           S  N +I  +D+I    L+P++ +SE++ +F IGF I LPF+++D++++++++ +GMMM+
Sbjct: 61  SEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGFYIYLPFVVVDLVISSVLLTLGMMMM 120

Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            P +IS P K+I FV +DGW++L + L+  +
Sbjct: 121 SPVTISTPIKLILFVAMDGWTMLSKGLILQY 151


>gi|304412098|ref|ZP_07393708.1| type III secretion system inner membrane P protein [Shewanella
           baltica OS183]
 gi|307305993|ref|ZP_07585739.1| type III secretion system inner membrane P protein [Shewanella
           baltica BA175]
 gi|304349648|gb|EFM14056.1| type III secretion system inner membrane P protein [Shewanella
           baltica OS183]
 gi|306911486|gb|EFN41912.1| type III secretion system inner membrane P protein [Shewanella
           baltica BA175]
          Length = 231

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/203 (23%), Positives = 89/203 (43%), Gaps = 17/203 (8%)

Query: 55  LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
             I  + + ++ IV +I++  +G   +PP +V+  LA  M    + P +   +E  ++P 
Sbjct: 29  FFICFSGYVKYNIVLNIIKNAVGTQQIPPTIVVNLLAALMALNSIWPDIKPGLER-VKPY 87

Query: 115 MNNQIT--------ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDH 166
              QI         +++++    +P  V M              +A +  +  ++T+   
Sbjct: 88  FIEQINGEINPDVLQSSSLFEDKKPEQVTMYYLVSNVFEFFPELLARAQRKTNELTEIID 147

Query: 167 IEYRILIPS--------FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
           I       S         +I +L + FE G  + + F+ ID ++A I+  +GM ML PT 
Sbjct: 148 IPLNFDSGSDTLKYFLGNLILDLYQGFEFGLKLYMIFVSIDFLIAVILSGVGMTMLSPTV 207

Query: 219 ISLPFKVIFFVLIDGWSLLVENL 241
           IS P K+  F   D W++L   L
Sbjct: 208 ISTPVKLAVFYFSDSWTILFRAL 230


>gi|218512614|ref|ZP_03509454.1| type III secretion system protein [Rhizobium etli 8C-3]
          Length = 148

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/126 (40%), Positives = 73/126 (57%)

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
                + +VA P   FM   +  +    F+  +     N   T     +  +L PSF++S
Sbjct: 21  GMADGMIKVAAPLKDFMLKFSDAEVRDFFVQASQKIWANAPATPIASDDITVLTPSFLVS 80

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVE 239
           EL R+FEIGFLI LPFL+ID  V+ I++A+GM M+ PT +S P K++ FV IDGW  L+E
Sbjct: 81  ELTRAFEIGFLIYLPFLMIDFAVSAILVALGMQMMSPTVVSTPLKLLLFVSIDGWRRLLE 140

Query: 240 NLVKSF 245
            LV S+
Sbjct: 141 GLVLSY 146


>gi|218513456|ref|ZP_03510296.1| flagellar biosynthesis protein FliP [Rhizobium etli 8C-3]
          Length = 124

 Score =  109 bits (272), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 70/100 (70%), Positives = 87/100 (87%), Gaps = 2/100 (2%)

Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195
           M  NTR+KDL+LF+D+A    R  +I  +D I+YR+LIP+FMISE+RR FEIGFL++LPF
Sbjct: 1   MAANTRDKDLALFVDLAR--ERGQNIQTSDPIDYRVLIPAFMISEIRRGFEIGFLVVLPF 58

Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235
           L+ID+IVATI MAMGMMMLPPTSISLPFK++FFVLIDGW+
Sbjct: 59  LVIDLIVATITMAMGMMMLPPTSISLPFKILFFVLIDGWN 98


>gi|179742405|gb|ACB86739.1| HrcR [uncultured soil bacterium]
          Length = 154

 Score =  105 bits (263), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 44/145 (30%), Positives = 76/145 (52%), Gaps = 2/145 (1%)

Query: 76  MGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFW 133
           +G+  VPPN+ +  +AL  T +VM+P      +      +    TE   T+   V EP  
Sbjct: 1   IGVQQVPPNMAMYGIALAATMFVMAPVAHDIQQRVHDHPLEMGSTEKLQTSAMTVIEPLQ 60

Query: 134 VFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193
            FM  NT     +  +D            +    +  + +P+F++SEL+  F+IGFLI +
Sbjct: 61  RFMTRNTDPDVSAHLLDNTQRMWPKDMADQATKNDLLLAVPAFVLSELQAGFQIGFLIYI 120

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTS 218
           PF++ID+IV+ +++A+GM M+ P +
Sbjct: 121 PFIVIDLIVSNLLLALGMQMVSPMT 145


>gi|253990947|ref|YP_003042303.1| type III secretion system protein [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782397|emb|CAQ85561.1| Putative Type III secretion flagellar biosynthesis inner membrane
           protein [Photorhabdus asymbiotica]
          Length = 236

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 50/207 (24%), Positives = 92/207 (44%), Gaps = 21/207 (10%)

Query: 55  LLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPL 114
             I  + F ++ IV +IL+  MG   +PP++V+  LA  +    +   L+  +E  I+P 
Sbjct: 29  FFICFSGFVKYNIVLNILKNAMGTQQIPPSIVVNLLAALLALNSIWGDLEPGLER-IKPY 87

Query: 115 MNNQITETTAIQRVAEPF-----------WVFMRNNTREKDLSLFMDMAHSSHRNTDITK 163
             +   ++  I                   V M +     D      +A +  ++ ++ K
Sbjct: 88  FTDTYDKSIPIIDPISGLGLSNNELSKSGDVTMYHLVSRIDEYFPEIIARAERKSLELEK 147

Query: 164 NDHIEY-------RILIP--SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML 214
              +          +L P    +I +L + FE+G  + + F+ ID ++A ++  +GM ML
Sbjct: 148 LFTLPIAFNDGSGSVLKPLLGGLILDLYKGFELGIKLYMIFVSIDFLIAVVLSGVGMSML 207

Query: 215 PPTSISLPFKVIFFVLIDGWSLLVENL 241
            PT IS+P K+  F   DGW++L   L
Sbjct: 208 SPTVISIPIKLAVFYFSDGWTILFNTL 234


>gi|149922183|ref|ZP_01910621.1| flagellar biosynthesis protein [Plesiocystis pacifica SIR-1]
 gi|149816923|gb|EDM76408.1| flagellar biosynthesis protein [Plesiocystis pacifica SIR-1]
          Length = 216

 Score =  103 bits (256), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 56/190 (29%), Positives = 97/190 (51%), Gaps = 13/190 (6%)

Query: 59  VTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ 118
            T F +  IV + +R G+    + P   +++L + +T  VM+P      E     L  + 
Sbjct: 36  CTAFTKIAIVLAAVRQGLSADRLLPVSSMLALGVALTAVVMAPVAGACAEALAALLDASA 95

Query: 119 ITETTAIQR---VAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPS 175
             E  A+++     EP   FM  +T   D +    +A +S R  D       +  IL+P+
Sbjct: 96  AGEGVALRQWLGTLEPLRGFMATHT---DPAELERLAAASERGVD-------DPLILVPA 145

Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWS 235
           F++SEL    ++  L++LPF++ID+IVA +   +G+   P  + +LP KV+ F+  DGW 
Sbjct: 146 FLVSELGAGLQLAVLVLLPFVVIDLIVAEVQALLGLQQTPSVTFALPAKVLVFLAADGWH 205

Query: 236 LLVENLVKSF 245
           L+V  LV+ +
Sbjct: 206 LVVVGLVEGY 215


>gi|218670285|ref|ZP_03519956.1| flagellar biosynthesis protein FliP [Rhizobium etli GR56]
          Length = 96

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 66/92 (71%), Positives = 82/92 (89%)

Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
           +  R  +I  +D I+YR+LIP+FMISE+RR FEIGFL++LPFL+ID+IVATI MAMGMMM
Sbjct: 4   ARERGQNIQTSDPIDYRVLIPAFMISEIRRGFEIGFLVVLPFLVIDLIVATITMAMGMMM 63

Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LPPTSISLPFK++FFVLIDGW+LLV +LV+SF
Sbjct: 64  LPPTSISLPFKILFFVLIDGWNLLVGSLVRSF 95


>gi|289805085|ref|ZP_06535714.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 111

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 47/110 (42%), Positives = 72/110 (65%)

Query: 136 MRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195
           M+ N+ EK+ + F ++   +       K       ILIP+F +S+L ++F IG LI LPF
Sbjct: 1   MQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPF 60

Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           L ID++++ I++AMGMMM+ P +ISLPFK++ F+L  GW L +  LV+SF
Sbjct: 61  LAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSF 110


>gi|312972918|ref|ZP_07787091.1| putative type III secretion apparatus integral membrane protein
           component [Escherichia coli 1827-70]
 gi|310332860|gb|EFQ00074.1| putative type III secretion apparatus integral membrane protein
           component [Escherichia coli 1827-70]
 gi|332344757|gb|AEE58091.1| Type III secretion apparatus protein EpaP [Escherichia coli UMNK88]
          Length = 126

 Score =  101 bits (252), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 77/116 (66%), Gaps = 2/116 (1%)

Query: 132 FWVFMRNNTREKDLSLFMDMA--HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189
           +  ++   +  + ++ F  +   +SS  N +I  +D+I    L+P++ +SE++ +F IGF
Sbjct: 4   YKSYLIKYSEPELVNFFEKIQKVNSSEDNEEIFDDDNISIFSLLPAYALSEIKSAFIIGF 63

Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            I LPF+++D++++++++ +GMMM+ P +IS P K+I FV +DGW++L + L+  +
Sbjct: 64  YIYLPFVVVDLVISSVLLTLGMMMMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 119


>gi|320202506|gb|EFW77076.1| surface presentation of antigens protein SpaP [Escherichia coli
           EC4100B]
          Length = 126

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/116 (32%), Positives = 77/116 (66%), Gaps = 2/116 (1%)

Query: 132 FWVFMRNNTREKDLSLFMDMA--HSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189
           +  ++   +  + +S F  +   +SS  N +I  +D+I    L+P++ +SE++ +F IGF
Sbjct: 4   YKSYLIKYSEPELVSFFEKIQKVNSSEDNEEIIDDDNISIFSLLPAYALSEIKSAFIIGF 63

Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
            I LPF+++D++++++++ +GMMM+ P +IS P K+I FV +DGW++L + L+  +
Sbjct: 64  YIYLPFVVVDLVISSVLLTLGMMMMSPVTISTPIKLILFVAMDGWTMLSKGLILQY 119


>gi|179742649|gb|ACB86742.1| HrcR [uncultured soil bacterium]
          Length = 145

 Score = 98.5 bits (244), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 75/140 (53%), Gaps = 5/140 (3%)

Query: 89  SLALFMTFYVMSPT---LDRSIEMGIQPLMNNQITETTA--IQRVAEPFWVFMRNNTREK 143
            +A+ ++ Y+++P        IE   Q      IT+T +  +    EP+  F+  + + +
Sbjct: 1   GIAIIVSVYILAPIGFAAMHGIETSQQNGQGGNITQTVSAGLIAAGEPYRAFLAAHAQSR 60

Query: 144 DLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVA 203
           +   F+  A +             +  +L P+F ++EL  +F+IGFL+ + F+++D+++A
Sbjct: 61  ERQFFLRSAAALWPPQQARALKDTDLIVLAPAFTMTELTDAFKIGFLLYIGFIVVDLVIA 120

Query: 204 TIVMAMGMMMLPPTSISLPF 223
            ++MAMG+  + PT++++P 
Sbjct: 121 NVLMAMGLNQVQPTNVAIPL 140


>gi|662864|gb|AAA79756.1| flagellar protein [Pseudomonas aeruginosa]
          Length = 141

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/104 (36%), Positives = 57/104 (54%)

Query: 26  VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
           V          +  ++   I T LS  P  ++++T F R IIVFSILR  +G+ S P N 
Sbjct: 37  VTTNGQGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQ 96

Query: 86  VIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVA 129
           V++ LALF+T +VM+P  D+     +QP +N QI    A+Q+  
Sbjct: 97  VLVGLALFLTMFVMAPVFDKINSQALQPYLNEQIPAQEALQKAE 140


>gi|179741043|gb|ACB86703.1| HrcR [Burkholderia phenazinium]
          Length = 134

 Score = 97.7 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 73/134 (54%), Gaps = 2/134 (1%)

Query: 80  SVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMR 137
            VPPN+VI  +A+ ++ YVM+P   ++ +      M  Q T+          EPF  F++
Sbjct: 1   QVPPNMVINGIAVLVSLYVMAPIGMQAAQSMQGQAMAPQPTQALIQMFSAAREPFRGFLK 60

Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197
            + +E++   FM  A               +  +L P+F +SEL  +F+IGFL+ + F++
Sbjct: 61  AHAKEREKRFFMHSASIVWPKEAANNLHDTDLIVLAPAFTLSELADAFKIGFLLYIAFIV 120

Query: 198 IDMIVATIVMAMGM 211
           +D+I+A +++AMG+
Sbjct: 121 VDLIIANVLLAMGL 134


>gi|179741749|gb|ACB86725.1| HrcR [uncultured soil bacterium]
          Length = 122

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 65/120 (54%)

Query: 109 MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIE 168
              Q   N     T  I    EPF  F+  + + ++   F+  A +             +
Sbjct: 1   QANQAPGNVTQNVTAGIAAAREPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTD 60

Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
             +L P+F ++EL  +F+IGFL+ + F+++D+++A ++MAMG+  + PT++++PFK++ F
Sbjct: 61  LIVLAPAFTLTELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPFKLLLF 120


>gi|194350737|gb|ACF53799.1| HrcR [Erwinia psidii]
          Length = 128

 Score = 97.0 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/128 (32%), Positives = 70/128 (54%), Gaps = 1/128 (0%)

Query: 103 LDRSIEMGIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
             R      +PL    I    A +    EP   FM  N     L+   + +      +  
Sbjct: 1   WHRCFRTQEKPLDMTDIASLQASVTYGLEPLQTFMSRNVDPDILTHLHENSLQMWPASLS 60

Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
            K +     ++IP+F++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SL
Sbjct: 61  EKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSL 120

Query: 222 PFKVIFFV 229
           PFK++ FV
Sbjct: 121 PFKLLLFV 128


>gi|19880031|gb|AAM00229.1|AF358871_1 SctR [Burkholderia pseudomallei]
          Length = 133

 Score = 95.8 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 76/133 (57%), Gaps = 2/133 (1%)

Query: 85  LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTRE 142
           +V+  +A+ ++ YVM+P   ++ +   +  + +Q ++    A+    EPF  F+  +T E
Sbjct: 1   MVLNGIAILVSLYVMAPIGMQAAKALDEQQLASQSSQAIIQALGSAREPFRSFLEKHTPE 60

Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202
           ++   F+  A       + +  +  +  +L P+F +SEL  +F+IGFL+ + F+I+D+++
Sbjct: 61  REKRFFIRSASVIWPKEEASLLNERDLIVLAPAFALSELTDAFKIGFLLYIVFIIVDLVI 120

Query: 203 ATIVMAMGMMMLP 215
           A +++A+G+  + 
Sbjct: 121 ANVLLALGLNQIT 133


>gi|179741303|gb|ACB86711.1| HrcR [uncultured soil bacterium]
          Length = 111

 Score = 95.4 bits (236), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 64/109 (58%)

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
            ET  I    EPF  F+  + + ++   F+  A +             +  +L P+F ++
Sbjct: 1   NETAGIAAAREPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLT 60

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
           EL  +F+IGFL+ + F+++D+++A ++MAMG+  + PT++++PFK++ F
Sbjct: 61  ELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPFKLLLF 109


>gi|179741968|gb|ACB86731.1| HrcR [uncultured soil bacterium]
          Length = 119

 Score = 95.4 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 65/117 (55%)

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           Q   N     T  I    EPF  F+  + + ++   F+  A +             +  +
Sbjct: 1   QAPGNVTQNVTAGIAAAREPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIV 60

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
           L P+F ++EL  +F+IGFL+ + F+++D+++A ++MAMG+  + PT++++PFK++ F
Sbjct: 61  LAPAFTLTELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPFKLLLF 117


>gi|179741902|gb|ACB86729.1| HrcR [uncultured soil bacterium]
          Length = 133

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 69/131 (52%), Gaps = 2/131 (1%)

Query: 100 SPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR 157
           +P    +++     Q   N     T  I    EPF  F+  + + ++   F+  A +   
Sbjct: 1   APVAFSAMQGMQANQAPGNVTQNVTAGIAAAREPFRTFLEAHAQSRERQFFLRSATALWP 60

Query: 158 NTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPT 217
                     +  +L P+F ++EL  +F+IGFL+ + F+++D+++A ++MAMG+  + PT
Sbjct: 61  AQQGKALKDTDLIVLAPAFTLTELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQVQPT 120

Query: 218 SISLPFKVIFF 228
           ++++P K++ F
Sbjct: 121 NVAIPLKLLLF 131


>gi|179741467|gb|ACB86716.1| HrcR [uncultured soil bacterium]
          Length = 122

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/109 (36%), Positives = 67/109 (61%), Gaps = 1/109 (0%)

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
                     EP   F+  ++R  + + F+  A        +  +D  ++ I +P+F+++
Sbjct: 13  NMVETANLAKEPLREFLLKHSRPNERAFFLRTAQRVDPARSVEMSDR-DFVITVPAFVVN 71

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
           EL  +F+IGFLI LPFL+ID++++ I++AMGMMML PT+ISLP K++ F
Sbjct: 72  ELSVAFQIGFLIFLPFLVIDLVISNILLAMGMMMLSPTTISLPLKLLLF 120


>gi|179741560|gb|ACB86719.1| HrcR [uncultured soil bacterium]
          Length = 120

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 64/117 (54%)

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           Q   N     T  I    EPF  F+  + + ++   F+  A +             +  +
Sbjct: 2   QAPSNVTQNVTAGIAAAREPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIV 61

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
           L P+F ++EL  +F+IGFL+ + F+++D+++A ++MAMG+  + PT++++P K++ F
Sbjct: 62  LAPAFTLTELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 118


>gi|179741532|gb|ACB86718.1| HrcR [uncultured soil bacterium]
          Length = 132

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 64/120 (53%)

Query: 109 MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIE 168
              Q   N     T  I    EPF  F+  + + ++   F+  A +             +
Sbjct: 11  QANQAPGNVTQNVTAGIAAAREPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTD 70

Query: 169 YRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
             +L P+F ++EL  +F+IGFL+ + F+++D+++A ++MAMG+  + PT++++P K++ F
Sbjct: 71  LIVLAPAFTLTELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 130


>gi|179741815|gb|ACB86727.1| HrcR [uncultured soil bacterium]
          Length = 119

 Score = 93.9 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 64/117 (54%)

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           Q   N     T  I    EPF  F+  + + ++   F+  A +             +  +
Sbjct: 1   QAPGNVTQNVTAGIAAAREPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIV 60

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
           L P+F ++EL  +F+IGFL+ + F+++D+++A ++MAMG+  + PT++++P K++ F
Sbjct: 61  LAPAFTLTELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPLKLLLF 117


>gi|194350756|gb|ACF53807.1| HrcR [Pectobacterium carotovorum subsp. carotovorum]
          Length = 127

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 66/115 (57%)

Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
           +++     T++     P   FM +NT    L    + +            +     ++IP
Sbjct: 13  LSSMDNLKTSVTNGVVPLQKFMTHNTDPDILIHLQENSVRMWPKEMSDSVNKDNLLLVIP 72

Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
           +F++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP K++ FV
Sbjct: 73  AFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPLKMLLFV 127


>gi|194350721|gb|ACF53791.1| HrcR [Erwinia amylovora]
          Length = 127

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 67/115 (58%)

Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
           +++     T++     P   FM +NT    L    + +        +   +     ++IP
Sbjct: 13  LSSMDNLKTSVTNGVAPLQKFMTHNTDPDILIHLQENSVRMWPKEMLDSVNKDNLLLVIP 72

Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
           +F++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP K++ FV
Sbjct: 73  AFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPLKMLLFV 127


>gi|194350758|gb|ACF53808.1| HrcR [Pectobacterium betavasculorum]
 gi|194350760|gb|ACF53809.1| HrcR [Pectobacterium betavasculorum]
 gi|194350764|gb|ACF53811.1| HrcR [Pectobacterium carotovorum subsp. brasiliensis]
 gi|194350766|gb|ACF53812.1| HrcR [Pectobacterium wasabiae WPP163]
          Length = 127

 Score = 93.5 bits (231), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 65/115 (56%)

Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
           +++     T++     P   FM +NT    L    + +                  ++IP
Sbjct: 13  LSSMDNLKTSVTNGVAPLQKFMTHNTDPDILIHLQENSVQMWPKEMSENVSKDNLLLVIP 72

Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
           +F++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP K++ FV
Sbjct: 73  AFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPLKMLLFV 127


>gi|179741369|gb|ACB86713.1| HrcR [uncultured soil bacterium]
          Length = 120

 Score = 93.5 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 63/117 (53%)

Query: 112 QPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRI 171
           Q   N     T  I    EPF  F+  + + ++   F+  A +             +  +
Sbjct: 2   QAPGNVTQNVTAGIAAAREPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIV 61

Query: 172 LIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
           L P+F ++EL  +F+IGFL+ + F+++D+++A ++MAMG+    PT++++P K++ F
Sbjct: 62  LAPAFTLTELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQGQPTNVAIPLKLLLF 118


>gi|330903542|gb|EGH34114.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 117

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 43/117 (36%), Positives = 74/117 (63%)

Query: 130 EPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGF 189
           EP   FM  NT    ++  ++            +    +  + IP+F++SEL+  FEIGF
Sbjct: 1   EPLQRFMTRNTDPDVVAHLLENTQRMWPKEMADQASKNDLLLAIPAFVLSELQAGFEIGF 60

Query: 190 LIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           LI +PF++ID+IV+ +++A+GM M+ P ++SLP K++ FVL+ GWS L+++L  S++
Sbjct: 61  LIYIPFIVIDLIVSNLLLALGMQMVSPMTLSLPLKLLLFVLVSGWSRLLDSLFYSYM 117


>gi|207109546|ref|ZP_03243708.1| flagellar biosynthesis protein FliP [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 99

 Score = 91.6 bits (226), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 53/100 (53%), Positives = 75/100 (75%), Gaps = 4/100 (4%)

Query: 146 SLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
             F  + +  +  T     D +   +LIP+FMISEL+ +F+IGFL+ LPFL+IDM++++I
Sbjct: 1   RFFFRIRNLPNPKT----PDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVIDMVISSI 56

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +MAMGMMMLPP  ISLPFK++ F+L+DG++LL ENLV SF
Sbjct: 57  LMAMGMMMLPPVMISLPFKILVFILVDGFNLLTENLVASF 96


>gi|323163025|gb|EFZ48858.1| harpin secretion protein hrpW [Escherichia coli E128010]
          Length = 149

 Score = 91.6 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 69/133 (51%), Gaps = 2/133 (1%)

Query: 33  LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
           ++I +  +    +F +LS+ PI +++ T F +  IV  IL+  +G+  VPPN+ + S++L
Sbjct: 1   MTIGSQPIFLIIVFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSL 60

Query: 93  FMTFYVMSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
            +T ++MSP + +  +   Q  +N  +        +++  P+  F+  NT ++++  F  
Sbjct: 61  ILTMFIMSPIILQINDNISQEPINYTDSDFFQKVDEKILSPYRGFLEKNTEKENVEFFER 120

Query: 151 MAHSSHRNTDITK 163
            A     N  I K
Sbjct: 121 AAQKKLGNETILK 133


>gi|330985216|gb|EGH83319.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 93

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/90 (43%), Positives = 60/90 (66%)

Query: 156 HRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLP 215
                       +  +LIP+F+ SEL R+FEIGFL+ +PFL++D++V+ ++MAMGM M+ 
Sbjct: 2   WSPEARADLRDDDLVVLIPAFVSSELTRAFEIGFLLYIPFLVVDLLVSNVLMAMGMSMVS 61

Query: 216 PTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           PT IS+P K+  FV + GWS L+  L+ S+
Sbjct: 62  PTLISIPLKIFLFVALSGWSRLMHGLILSY 91


>gi|213419213|ref|ZP_03352279.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 120

 Score = 91.2 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 72/115 (62%), Gaps = 8/115 (6%)

Query: 140 TREKDLSLFMDMAHSSHR--------NTDITKNDHIEYRILIPSFMISELRRSFEIGFLI 191
             +++L  F + A    +          D  + +      L+P++ +SE++ +F+IGF +
Sbjct: 2   YSDRELVQFFENAQLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGFYL 61

Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
            LPF+++D++V+++++A+GMMM+ P +IS P K++ FV +DGW+LL + L+  ++
Sbjct: 62  YLPFVVVDLVVSSVLLALGMMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQYM 116


>gi|194350731|gb|ACF53796.1| HrcR [Brenneria lupinicola]
          Length = 125

 Score = 90.8 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/125 (31%), Positives = 67/125 (53%), Gaps = 1/125 (0%)

Query: 103 LDRSIEMGIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
             R      +PL    IT   A +    EP   FM  N     L+   + +      +  
Sbjct: 1   WHRCFRTQEKPLDMTDITSLQASVTYGQEPLQTFMSRNVDPDILTHLHENSLQMWPASLS 60

Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
            K +     ++IP+F++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SL
Sbjct: 61  EKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSL 120

Query: 222 PFKVI 226
           P  ++
Sbjct: 121 PLPLL 125


>gi|179742161|gb|ACB86735.1| HrcR [uncultured soil bacterium]
          Length = 112

 Score = 90.4 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 35/108 (32%), Positives = 62/108 (57%)

Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
              +   V EP   FM  NT    ++  +D            +    +  + +P+F++SE
Sbjct: 3   LQASANTVIEPLQRFMTRNTDPDVIAHLLDNTQRMWPKDMADQASKSDLLLAVPAFVLSE 62

Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFF 228
           L+  F+IGFLI +PF++ID+I + +++A+GM ++ P +ISLPFK++ F
Sbjct: 63  LQAGFQIGFLIYIPFIVIDLIDSNLLLALGMQIVFPMTISLPFKLLLF 110


>gi|226326424|ref|ZP_03801942.1| hypothetical protein PROPEN_00272 [Proteus penneri ATCC 35198]
 gi|225205207|gb|EEG87561.1| hypothetical protein PROPEN_00272 [Proteus penneri ATCC 35198]
          Length = 105

 Score = 88.5 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 32/79 (40%), Positives = 60/79 (75%)

Query: 168 EYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIF 227
               L+P++ +SE++ +F IGF + LPF++ID++V+ I++A+GMMM+ P ++S+P K+I 
Sbjct: 21  SLLSLLPAYALSEIKSAFIIGFYLYLPFIVIDLVVSCILLALGMMMMSPITLSVPLKLIL 80

Query: 228 FVLIDGWSLLVENLVKSFI 246
           F+ +DGW+LL + L+  ++
Sbjct: 81  FIAMDGWTLLSKGLINQYL 99


>gi|194350768|gb|ACF53813.1| HrcR [Pectobacterium atrosepticum SCRI1043]
          Length = 121

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 61/108 (56%)

Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
           +++     T++     P   FM +NT    L    + +            +     ++IP
Sbjct: 13  LSSMDNLKTSVTNGVAPLQKFMTHNTDPDILIHLQENSVRMWPKEMSDSVNKDNLLLVIP 72

Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLP 222
           +F++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP
Sbjct: 73  AFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLP 120


>gi|194350762|gb|ACF53810.1| HrcR [Pectobacterium carotovorum subsp. brasiliensis]
          Length = 121

 Score = 86.6 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/109 (30%), Positives = 60/109 (55%)

Query: 115 MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIP 174
           +++     T++     P   FM +NT    L    + +                  ++IP
Sbjct: 13  LSSMDNLKTSVTNGVAPLQKFMTHNTDPDILIHLQENSVQMWPKEMSENVSKDNLLLVIP 72

Query: 175 SFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
           +F++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SLP 
Sbjct: 73  AFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPL 121


>gi|194350733|gb|ACF53797.1| HrcR [Brenneria lupinicola]
          Length = 128

 Score = 83.9 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/128 (32%), Positives = 70/128 (54%), Gaps = 1/128 (0%)

Query: 103 LDRSIEMGIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
             R      +PL    IT   A +    EP   FM  N     L+   + +      +  
Sbjct: 1   WHRCFRTQEKPLDMTDITSLQASVTYGLEPLQTFMSRNVDPDILTHLHENSLQMWPASLS 60

Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
            K +     ++IP+F++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SL
Sbjct: 61  EKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSL 120

Query: 222 PFKVIFFV 229
           P K++ FV
Sbjct: 121 PLKLLLFV 128


>gi|194350749|gb|ACF53805.1| HrcR [Brenneria nigrifluens]
          Length = 128

 Score = 83.5 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/128 (32%), Positives = 71/128 (55%), Gaps = 1/128 (0%)

Query: 103 LDRSIEMGIQPLMNNQIT-ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
             R       PL  N I+    ++ +   P   FM  NT    L+   + +      +  
Sbjct: 1   WRRCFRTQENPLNMNDISVLQESVTQGLAPLQTFMSRNTDPDILTHLQENSLRMWPPSLS 60

Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
            K +     ++IP+F++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SL
Sbjct: 61  EKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSL 120

Query: 222 PFKVIFFV 229
           P K++ FV
Sbjct: 121 PLKLLLFV 128


>gi|194350725|gb|ACF53793.1| HrcR [Erwinia mallotivora]
          Length = 128

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/128 (32%), Positives = 70/128 (54%), Gaps = 1/128 (0%)

Query: 103 LDRSIEMGIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
             R      +PL    IT   A +    EP   FM  N     L+   + +      +  
Sbjct: 1   WHRYFRTQEKPLDMTDITSLQASVTYGLEPLQTFMSRNVDPDILTHLHENSLRMWPASLS 60

Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
            K +     ++IP+F++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SL
Sbjct: 61  EKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSL 120

Query: 222 PFKVIFFV 229
           P K++ FV
Sbjct: 121 PLKLLLFV 128


>gi|207110871|ref|ZP_03245033.1| flagellar biosynthesis protein FliP [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 78

 Score = 83.5 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/78 (39%), Positives = 51/78 (65%)

Query: 78  MGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMR 137
               PP  +++SL+L +TF++M P+L ++ + GI+P M+ +I+ T A ++ A PF  FM 
Sbjct: 1   TQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSALPFKEFML 60

Query: 138 NNTREKDLSLFMDMAHSS 155
            NTREKDL+LF  + +  
Sbjct: 61  KNTREKDLALFFRIRNLP 78


>gi|194350723|gb|ACF53792.1| HrcR [Erwinia mallotivora]
          Length = 127

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 1/117 (0%)

Query: 103 LDRSIEMGIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
             R      +PL    IT   A +    EP   FM  N     L+   + +      +  
Sbjct: 1   WHRYFRTQEKPLDMTDITSLQASVTYGLEPLQTFMSRNVDPDILTHLHENSLRMWPASLS 60

Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
            K +     ++IP+F++SEL+  F+IGFLI +PF++ID+IV+ +++A GM M+ P +
Sbjct: 61  EKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVMLARGMQMVAPQT 117


>gi|194350751|gb|ACF53806.1| HrcR [Brenneria salicis]
          Length = 128

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 41/128 (32%), Positives = 69/128 (53%), Gaps = 1/128 (0%)

Query: 103 LDRSIEMGIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
             R      +PL    IT   A +    EP   FM  N     L+   + +      +  
Sbjct: 1   WHRCFRTQEKPLDMTDITSLQASVTYGLEPLQTFMSRNVDPDILTHLHENSLQMWPASLS 60

Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
            K +     ++IP+F++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM  + P ++SL
Sbjct: 61  EKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQRVAPXTLSL 120

Query: 222 PFKVIFFV 229
           P K++ FV
Sbjct: 121 PLKLLLFV 128


>gi|194350741|gb|ACF53801.1| HrcR [Erwinia tracheiphila]
          Length = 128

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/110 (35%), Positives = 63/110 (57%)

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           T  T      EP   FM  NT    L+   + +          K       ++IP+F++S
Sbjct: 19  TLETTATHGIEPLQKFMSRNTDPDILTHLHENSIRMWPAAMSEKATTDNILLVIPAFVLS 78

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
           EL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ PT++ LP K++ FV
Sbjct: 79  ELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPTTLWLPLKLLLFV 128


>gi|194350739|gb|ACF53800.1| HrcR [Erwinia tracheiphila]
 gi|194350743|gb|ACF53802.1| HrcR [Brenneria quercina]
          Length = 128

 Score = 82.0 bits (201), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 40/110 (36%), Positives = 64/110 (58%)

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           T  T      EP   FM  NT    L+   + +          K       ++IP+F++S
Sbjct: 19  TLETTATHGIEPLQKFMSRNTDPDILTHLHENSIRMWPAAMSEKATTDNILLVIPAFVLS 78

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
           EL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ PT++SLP K++ FV
Sbjct: 79  ELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPTTLSLPLKLLLFV 128


>gi|194350745|gb|ACF53803.1| HrcR [Brenneria quercina]
 gi|194350747|gb|ACF53804.1| HrcR [Brenneria nigrifluens]
          Length = 128

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 40/110 (36%), Positives = 64/110 (58%)

Query: 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMIS 179
           T  T      EP   FM  NT    L+   + +          K       ++IP+F++S
Sbjct: 19  TLETTATHGIEPLQKFMSRNTDPDILTHLHENSIRMWPPAMSEKATTDNILLVIPAFVLS 78

Query: 180 ELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFV 229
           EL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ PT++SLP K++ FV
Sbjct: 79  ELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPTTLSLPLKLLLFV 128


>gi|194350727|gb|ACF53794.1| HrcR [Erwinia rhapontici]
 gi|194350729|gb|ACF53795.1| HrcR [Erwinia rhapontici]
 gi|194350735|gb|ACF53798.1| HrcR [Erwinia psidii]
 gi|194350771|gb|ACF53814.1| HrcR [Erwinia chrysanthemi]
          Length = 128

 Score = 82.0 bits (201), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 42/128 (32%), Positives = 70/128 (54%), Gaps = 1/128 (0%)

Query: 103 LDRSIEMGIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
             R      +PL    IT   A +    EP   FM  N     L+   + +      +  
Sbjct: 1   WLRCFRTQEKPLDMTDITSLQASVTYGLEPLQTFMSRNVDPDILTHLHENSLQMWPASLS 60

Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
            K +     ++IP+F++SEL+  F+IGFLI +PF++ID+IV+ +++A+GM M+ P ++SL
Sbjct: 61  EKVNTQNLLLVIPAFVLSELQAGFKIGFLIYIPFIVIDLIVSNVLLALGMQMVAPMTLSL 120

Query: 222 PFKVIFFV 229
           P K++ FV
Sbjct: 121 PLKLLLFV 128


>gi|75906098|gb|ABA29440.1| putative type III secretion system protein [Candidatus Hamiltonella
           defensa]
          Length = 97

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 40/96 (41%), Positives = 64/96 (66%)

Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
           DM  ++       K       IL+P+F +S+L  +F+IG L+ LPF+ ID+IV+ I++AM
Sbjct: 1   DMIKNNWPKKYRDKVASDSLLILMPAFTVSQLIEAFKIGLLLYLPFVAIDLIVSNILLAM 60

Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           GMMM+ P +ISLPFK++ F+L+ GW +++  L  S+
Sbjct: 61  GMMMMSPMTISLPFKILIFLLVGGWDMILGQLAGSY 96


>gi|179741848|gb|ACB86728.1| HrcR [uncultured soil bacterium]
          Length = 93

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 53/88 (60%)

Query: 138 NNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLI 197
            + + ++   F+  A +             +  +L P+F ++EL  +F+IGFL+ + F++
Sbjct: 1   AHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELTDAFKIGFLLYIGFIV 60

Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKV 225
           +D+++A ++MAMG+  + PT++++P K+
Sbjct: 61  VDLVIANVLMAMGLNQVQPTNVAIPLKL 88


>gi|218679632|ref|ZP_03527529.1| flagellar biosynthesis protein FliP [Rhizobium etli CIAT 894]
          Length = 105

 Score = 77.7 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 56/99 (56%), Positives = 75/99 (75%)

Query: 5   CFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPR 64
            F A  +V PEL  A+    D++N+P D S++ WI+RTFG+ T+LS+AP +LIMVT FPR
Sbjct: 6   VFLAAMMVVPELAVAQQLPTDLLNVPVDGSVAAWIIRTFGLLTVLSVAPGILIMVTSFPR 65

Query: 65  FIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
           FII FSILR+GMG+ S P N++++SL+LFMTFYVM   L
Sbjct: 66  FIIAFSILRSGMGLSSTPSNMILLSLSLFMTFYVMFADL 104


>gi|330985215|gb|EGH83318.1| type III secretion system protein YscR [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 133

 Score = 74.6 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 21/131 (16%), Positives = 48/131 (36%), Gaps = 2/131 (1%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
                ++    +   + + P+ ++ +T F +  +V  ++R  +G+   PPNLV+  +AL 
Sbjct: 3   GYQPNLIEIILVVATIGLIPLAVVTLTGFMKISVVLFLIRNALGVQQTPPNLVLYGIALI 62

Query: 94  MTFYVMSPTLDRSIE--MGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDM 151
           ++ YV +P +        G    + N          +  P    +     E +   F+  
Sbjct: 63  LSVYVTTPLIGDMYREVQGRDLSLQNVQQLEELGSALRPPLQAHLSKFANESERGFFVQA 122

Query: 152 AHSSHRNTDIT 162
             +        
Sbjct: 123 TETIWSPEARA 133


>gi|323267197|gb|EGA50682.1| type III secretion system protein YscR [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
          Length = 109

 Score = 73.1 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 56/107 (52%), Gaps = 1/107 (0%)

Query: 33  LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
           +S+    ++  GI  +LSI P++++M T F +  +VFSILR  +G+  VPPN+ +  LAL
Sbjct: 1   MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLAL 60

Query: 93  FMTFYVMSPTLDRSIEM-GIQPLMNNQITETTAIQRVAEPFWVFMRN 138
            ++ ++M PTL    E      +       +    +   P+  F++ 
Sbjct: 61  VLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQK 107


>gi|226326425|ref|ZP_03801943.1| hypothetical protein PROPEN_00273 [Proteus penneri ATCC 35198]
 gi|225205208|gb|EEG87562.1| hypothetical protein PROPEN_00273 [Proteus penneri ATCC 35198]
          Length = 121

 Score = 72.3 bits (176), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 54/117 (46%), Gaps = 6/117 (5%)

Query: 42  TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSP 101
                   ++AP ++   TC+ +F IV  + R  +G+  VP N+V+ ++AL M  +VM+P
Sbjct: 7   LILTLAFATLAPFIIAAGTCYLKFSIVLVMTRNALGVQQVPSNMVLNAVALMMALFVMTP 66

Query: 102 TLDRSIEMGIQPLMNNQITETTAIQRVAE----PFWVFMRNNTREKDLSLFMDMAHS 154
               S +  +   ++  IT   +++R ++     +  ++   +  + L  F      
Sbjct: 67  IAKNSYQYLVDEPIS--ITSPESLERFSDEALGEYKRYLYRYSEPELLEFFEKSTRK 121


>gi|323178894|gb|EFZ64470.1| harpin secretion protein hrpW [Escherichia coli 1180]
          Length = 118

 Score = 71.6 bits (174), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 60/113 (53%), Gaps = 2/113 (1%)

Query: 33  LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
           ++I +  +    +F +LS+ PI +++ T F +  IV  IL+  +G+  VPPN+ + S++L
Sbjct: 5   MTIGSQPIFLIIVFFLLSLLPIFVVIGTSFLKISIVLGILKNALGIQQVPPNMALTSVSL 64

Query: 93  FMTFYVMSPTLDRSIEMGIQPLMN--NQITETTAIQRVAEPFWVFMRNNTREK 143
            +T ++MSP + +  +   Q  +N  +        +++  P+  F+    R+ 
Sbjct: 65  ILTMFIMSPIILQINDNISQEPINYTDSDFFQKVDEKILSPYRGFLEKIQRKT 117


>gi|255523691|ref|ZP_05390657.1| type III secretion system inner membrane P protein [Clostridium
           carboxidivorans P7]
 gi|255512560|gb|EET88834.1| type III secretion system inner membrane P protein [Clostridium
           carboxidivorans P7]
          Length = 70

 Score = 70.4 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/69 (59%), Positives = 60/69 (86%)

Query: 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSL 236
           MISEL+ +F IGF++ +PF+IID++VA+++M+MGM MLPP  +SLPFK++ FV++DGW L
Sbjct: 1   MISELKTAFMIGFMLYIPFMIIDLVVASVLMSMGMFMLPPAMVSLPFKLLLFVMVDGWYL 60

Query: 237 LVENLVKSF 245
           LV++LV SF
Sbjct: 61  LVKSLVSSF 69


>gi|213419313|ref|ZP_03352379.1| surface presentation of antigens protein SpaP [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 100

 Score = 70.4 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 38/68 (55%)

Query: 40  VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
           +    +    ++ P ++   TCF +F IVF ++R  +G+  +P N+ + S+AL ++ +VM
Sbjct: 5   ISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNSVALLLSMFVM 64

Query: 100 SPTLDRSI 107
            P +  + 
Sbjct: 65  WPIMHDAY 72


>gi|255023681|ref|ZP_05295667.1| flagellar biosynthesis protein FliP [Listeria monocytogenes FSL
           J1-208]
          Length = 118

 Score = 68.1 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 2/101 (1%)

Query: 4   YCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFP 63
           +    +F      V A+S L  +     D   S+  V  F + T+LS++  +++M T F 
Sbjct: 18  FAISLVFFWPGVNVHAESWLDSLGVNGTDGVNSS--VALFVLVTVLSLSASIVLMFTHFT 75

Query: 64  RFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
             IIV  + R G+G  ++PPN V++ LALF++ ++M P + 
Sbjct: 76  YCIIVLGLTRQGLGATNLPPNQVLVGLALFLSLFMMQPLIT 116


>gi|179741334|gb|ACB86712.1| HrcR [uncultured soil bacterium]
          Length = 72

 Score = 67.7 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 47/63 (74%)

Query: 166 HIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKV 225
             +  +L P+F ++EL  +F+IGFL+ + F+++D+++A ++MAMG+  + PT++++P K+
Sbjct: 8   DTDLIVLAPAFTLTELTDAFKIGFLLYIGFIVVDLVIANVLMAMGLNQVQPTNVAIPLKL 67

Query: 226 IFF 228
           + F
Sbjct: 68  LLF 70


>gi|179741285|gb|ACB86710.1| HrcR [uncultured soil bacterium]
          Length = 88

 Score = 67.3 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 41/81 (50%)

Query: 123 TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182
             +    EPF  F+  + + ++   F+  A +             +  +L P+F ++EL 
Sbjct: 8   EGMAAAREPFRTFLEAHAQSRERQFFLRSATALWPAQQAKALKDTDLIVLAPAFTLTELT 67

Query: 183 RSFEIGFLIILPFLIIDMIVA 203
            +F+IGFL+ + F+++D+ +A
Sbjct: 68  DAFKIGFLLYIGFIVVDLEIA 88


>gi|291084579|ref|ZP_06539401.2| flagellar biosynthesis protein FliP [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 60

 Score = 66.5 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 37/60 (61%)

Query: 71  ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
           +LR  +G  S PPN V++ LALF+TF++MSP +D+      QP    +I+   A+ + A+
Sbjct: 1   MLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEQKISMQEALDKGAQ 60


>gi|218670413|ref|ZP_03520084.1| flagellar biosynthesis protein FliP [Rhizobium etli GR56]
          Length = 84

 Score = 66.5 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/84 (54%), Positives = 61/84 (72%), Gaps = 1/84 (1%)

Query: 1  MIRYC-FFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMV 59
          MIR+  F A  +  PEL  A+    D++N+P D S++ WI+RTFG+ TILS+AP +LIMV
Sbjct: 1  MIRFIIFLAAMMAVPELAVAQQLPTDLLNVPVDGSVAAWIIRTFGLLTILSVAPGILIMV 60

Query: 60 TCFPRFIIVFSILRTGMGMGSVPP 83
          T FPRFII FSILR+G+G+ S P 
Sbjct: 61 TSFPRFIIAFSILRSGIGLSSTPS 84


>gi|323178895|gb|EFZ64471.1| harpin secretion protein hrpW [Escherichia coli 1180]
          Length = 68

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 51/65 (78%)

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
           + +L  +F+IGFL+ LPF+ ID+I++ I++A+GMMM+ P +IS+PFK++ F+L+ GW  L
Sbjct: 1   MGQLEAAFKIGFLLYLPFIAIDLIISNILLALGMMMVSPVTISIPFKILLFILVGGWQKL 60

Query: 238 VENLV 242
            E L+
Sbjct: 61  FEFLL 65


>gi|323267198|gb|EGA50683.1| type III secretion system protein YscR [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
          Length = 69

 Score = 63.1 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/68 (52%), Positives = 53/68 (77%)

Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLL 237
           +S+L ++F IG LI LPFL ID++++ I++AMGMMM+ P +ISLPFK++ F+L  GW L 
Sbjct: 1   MSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLT 60

Query: 238 VENLVKSF 245
           +  LV+SF
Sbjct: 61  LAQLVQSF 68


>gi|167948772|ref|ZP_02535846.1| flagellar biosynthesis protein FliP [Endoriftia persephone
          'Hot96_1+Hot96_2']
          Length = 109

 Score = 61.5 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 28/64 (43%)

Query: 26 VMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNL 85
          V      +   T  ++     T LS+ P  L+M+T F R IIV +ILR  +G    P   
Sbjct: 6  VTQDAGGVQTYTLSIQVLLFMTALSLIPGALMMMTSFARIIIVLAILRQALGTQEHPATT 65

Query: 86 VIIS 89
           I  
Sbjct: 66 QIPG 69


>gi|213028920|ref|ZP_03343367.1| surface presentation of antigens protein SpaO [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 125

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 34/63 (53%)

Query: 34  SISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALF 93
           S +   +    +    ++ P ++   TCF +F IVF ++R  +G+  +P N+ + S+AL 
Sbjct: 63  SGNGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQIPSNMTLNSVALL 122

Query: 94  MTF 96
           ++ 
Sbjct: 123 LSC 125


>gi|145207712|emb|CAJ90702.1| putative RhcR protein [Bradyrhizobium japonicum]
          Length = 57

 Score = 58.5 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 32/52 (61%), Positives = 40/52 (76%)

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           PF+ ID+IV TI+MAMGM M+ PT IS+PFK+  FV IDGWS L+  LV S+
Sbjct: 1   PFITIDLIVTTILMAMGMSMVSPTVISVPFKLFLFVTIDGWSRLMHGLVLSY 52


>gi|15646198|ref|NP_207478.1| flagellar biosynthesis protein [Helicobacter pylori 26695]
 gi|7464067|pir||D64605 flagellar biosynthesis protein - Helicobacter pylori (strain
          26695)
          Length = 105

 Score = 58.5 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 4  YCFFALFLVTPELVF--AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTC 61
          +      L+ P +    A  S++  +N P D       +    + T+L +AP L++++T 
Sbjct: 6  FLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTS 65

Query: 62 FPRFIIVFSILRTGMGMGSVPP 83
          F R I+VFS LRT +G    PP
Sbjct: 66 FTRLIVVFSFLRTALGTQQTPP 87


>gi|213615826|ref|ZP_03371652.1| type III secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 73

 Score = 57.3 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 46/71 (64%)

Query: 33  LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLAL 92
           +S+    ++  GI  +LSI P++++M T F +  +VFSILR  +G+  VPPN+ +   AL
Sbjct: 1   MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFAL 60

Query: 93  FMTFYVMSPTL 103
            ++ ++M PTL
Sbjct: 61  VLSLFIMGPTL 71


>gi|119391678|emb|CAJ46463.1| RhcR protein [Bradyrhizobium japonicum]
 gi|145207704|emb|CAJ90696.1| putative RhcR protein [Bradyrhizobium sp. MSDJ 5327]
 gi|145207708|emb|CAJ90699.1| putative RhcR protein [Bradyrhizobium japonicum]
          Length = 57

 Score = 57.3 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/52 (59%), Positives = 40/52 (76%)

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           P ++ID+IV TI+MAMGM M+ PT IS+PFK+  FV IDGWS L+  LV S+
Sbjct: 1   PLIVIDLIVTTILMAMGMSMVSPTVISVPFKLFLFVTIDGWSRLMHGLVLSY 52


>gi|119391682|emb|CAJ46466.1| RhcR protein [Bradyrhizobium liaoningense]
 gi|145207716|emb|CAJ90705.1| putative RhcR protein [Bradyrhizobium japonicum]
          Length = 57

 Score = 56.9 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/52 (59%), Positives = 39/52 (75%)

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           P + ID+IV TI+MAMGM M+ PT IS+PFK+  FV IDGWS L+  LV S+
Sbjct: 1   PLITIDLIVTTILMAMGMSMVSPTVISVPFKLFLFVTIDGWSRLMHGLVLSY 52


>gi|207110048|ref|ZP_03244210.1| flagellar biosynthesis protein FliP [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 104

 Score = 55.4 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 35/64 (54%)

Query: 19  AKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGM 78
           A  S++  +N P D       +    + T+L +AP L++++T F R I+VFS LRT +G 
Sbjct: 41  ALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGT 100

Query: 79  GSVP 82
              P
Sbjct: 101 QQTP 104


>gi|289805086|ref|ZP_06535715.1| type III secretion system protein [Salmonella enterica subsp.
          enterica serovar Typhi str. AG3]
          Length = 62

 Score = 55.0 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 38/58 (65%)

Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
            GI  +LSI P++++M T F +  +VFSILR  +G+  VPPN+ +   AL ++ ++M
Sbjct: 1  MIGILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGFALVLSLFIM 58


>gi|167948773|ref|ZP_02535847.1| flagellar biosynthetic protein FliP [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 153

 Score = 54.6 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 132 FWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPS-FMISELRRSFEI 187
              FM   TRE DL++F  + +             + + +L+P+ F  SEL+  F+I
Sbjct: 1   MREFMLAQTREDDLAMFARIGNYRRAAESRRM---VPFSLLLPALFATSELKTGFQI 54


>gi|158524084|gb|ABW71149.1| putative type III secretion apparatus protein [Vibrio
           parahaemolyticus]
          Length = 125

 Score = 52.3 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 53/127 (41%), Gaps = 12/127 (9%)

Query: 94  MTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQ-RVAEPFWVFMRNNTREKDLSLFMDMA 152
           M    + P +   IE  ++P  + Q  +          P  V M +   E        + 
Sbjct: 1   MALNAVWPQIQPGIER-VKPYFSQQEKQELNQDVDNDMPKNVTMYSLVSEWSTFFPELLE 59

Query: 153 HSSHRNTDITK---------NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVA 203
           H+  +   +++          +H  ++  + S +I++L + FE+G  + + F+ ID ++A
Sbjct: 60  HAKQKTDKLSEVIELPFNFDKEHDTFKYFVGS-LINDLYKGFELGLKLYIVFVSIDFLIA 118

Query: 204 TIVMAMG 210
            I+  +G
Sbjct: 119 VILSGVG 125


>gi|121592127|gb|ABD36816.1| flagellar biosynthesis protein FliP [Pseudomonas fluorescens]
          Length = 55

 Score = 51.9 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/50 (62%), Positives = 42/50 (84%)

Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           LIID++VA+++MAMGMMML P  ISLPFK++ FVL+DGW+L++  L  SF
Sbjct: 1   LIIDLVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLASSF 50


>gi|51587274|emb|CAE53660.1| putative HrcR [Pseudomonas fluorescens bv. V]
 gi|51587278|emb|CAE53663.1| putative HrcR [Pseudomonas fluorescens bv. V]
 gi|51587286|emb|CAE53669.1| putative HrcR protein [Pseudomonas fluorescens bv. V]
 gi|51587290|emb|CAE53672.1| putative HrcR protein [Pseudomonas fluorescens]
 gi|51587314|emb|CAE53690.1| putative HrcR [Pseudomonas fluorescens bv. V]
          Length = 53

 Score = 51.1 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 43/53 (81%)

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           PF++ID+IV+ +++A+GM M+ P +ISLP K++ FV++ GWS L+++L  S++
Sbjct: 1   PFIVIDLIVSNLLLALGMQMVSPMTISLPLKLLLFVMVSGWSRLLDSLFLSYL 53


>gi|254510638|ref|ZP_05122705.1| flagellar biosynthetic protein FliP [Rhodobacteraceae bacterium
          KLH11]
 gi|221534349|gb|EEE37337.1| flagellar biosynthetic protein FliP [Rhodobacteraceae bacterium
          KLH11]
          Length = 101

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 31/49 (63%)

Query: 27 MNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTG 75
          +++    SIS   ++   + T+LS+AP L IM+TCFP  I V +ILR G
Sbjct: 24 LSLGEGGSISARTIQLILLITVLSLAPGLAIMITCFPFLITVLAILRQG 72


>gi|321399649|emb|CBJ44652.1| putative type III secretion system protein HcrR [Pseudomonas sp.
           MTR-48-522]
          Length = 55

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/55 (43%), Positives = 45/55 (81%)

Query: 192 ILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           ++PF++ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GW+ L+++L  S++
Sbjct: 1   VIPFIVIDLIVSNLLLALGMQMVAPMTISLPLKLLIFVLVQGWTQLLDSLFYSYL 55


>gi|51587318|emb|CAE53693.1| putative HrcR [Pseudomonas fluorescens]
 gi|321399617|emb|CBJ44628.1| putative type III secretion system protein HcrR [Pseudomonas sp.
           MTE-48-102]
 gi|321399621|emb|CBJ44631.1| putative type III secretion system protein HcrR [Pseudomonas sp.
           MTE-48-104]
 gi|321399641|emb|CBJ44646.1| putative type III secretion system protein HcrR [Pseudomonas sp.
           MTR-25-521]
 gi|321399645|emb|CBJ44649.1| putative type III secretion system protein HcrR [Pseudomonas sp.
           MTR-48-521]
 gi|321399657|emb|CBJ44658.1| putative type III secretion system protein HcrR [Pseudomonas sp.
           MTR-J5-521]
 gi|321399661|emb|CBJ44661.1| putative type III secretion system protein HcrR [Pseudomonas sp.
           MTR-J5-522]
 gi|321399665|emb|CBJ44664.1| putative type III secretion system protein HcrR [Pseudomonas sp.
           MTR-J5-621]
 gi|321399669|emb|CBJ44667.1| putative type III secretion system protein HcrR [Pseudomonas sp.
           MTR-J5-622]
 gi|321399673|emb|CBJ44670.1| putative type III secretion system protein HcrR [Pseudomonas sp.
           MTR-J5-623]
          Length = 53

 Score = 50.4 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 43/53 (81%)

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           PF++ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GW+ L+++L  S++
Sbjct: 1   PFIVIDLIVSNLLLALGMQMVAPMTISLPLKLLIFVLVQGWTQLLDSLFYSYL 53


>gi|284810343|gb|ADB95953.1| putative HrcR [Pseudomonas cichorii]
 gi|284810347|gb|ADB95956.1| putative HrcR [Pseudomonas cichorii]
 gi|284810351|gb|ADB95959.1| putative HrcR [Pseudomonas cichorii]
 gi|284810355|gb|ADB95962.1| putative HrcR [Pseudomonas cichorii]
 gi|284810359|gb|ADB95965.1| putative HrcR [Pseudomonas cichorii]
 gi|284810363|gb|ADB95968.1| putative HrcR [Pseudomonas cichorii]
 gi|284810367|gb|ADB95971.1| putative HrcR [Pseudomonas cichorii]
 gi|284810371|gb|ADB95974.1| putative HrcR [Pseudomonas cichorii]
 gi|284810375|gb|ADB95977.1| putative HrcR [Pseudomonas cichorii]
 gi|284810379|gb|ADB95980.1| putative HrcR [Pseudomonas cichorii]
 gi|284810403|gb|ADB95998.1| putative HrcR [Pseudomonas cichorii]
          Length = 44

 Score = 49.6 bits (117), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 34/44 (77%)

Query: 203 ATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           + I++A+GM M+ P +ISLP K++ FVL+DGW+ L++ L  S++
Sbjct: 1   SNILLALGMQMVAPMTISLPLKILLFVLVDGWTRLLDGLFYSYM 44


>gi|51587262|emb|CAE53651.1| putative HrcR protein [Pseudomonas blatchfordae]
          Length = 53

 Score = 48.8 bits (115), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 42/53 (79%)

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           PF++ID+IV+ +++A+GM M+ P +ISLP K++ FV++ GWS L+ +L  S++
Sbjct: 1   PFIVIDLIVSNLLLALGMQMVSPMTISLPPKLLLFVMVSGWSRLLVSLFLSYL 53


>gi|238799426|ref|ZP_04642855.1| Flagellar biosynthetic protein FliP [Yersinia mollaretii ATCC
           43969]
 gi|238716730|gb|EEQ08617.1| Flagellar biosynthetic protein FliP [Yersinia mollaretii ATCC
           43969]
          Length = 46

 Score = 48.4 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 27/44 (61%), Positives = 39/44 (88%)

Query: 202 VATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           +A+++MA+GMMM+PP SISLPFK++ FVL+DGW LL+ +L +SF
Sbjct: 1   MASVLMALGMMMVPPASISLPFKLMLFVLVDGWQLLLGSLAQSF 44


>gi|51587282|emb|CAE53666.1| putative HrcR protein [Pseudomonas fluorescens bv. I]
          Length = 49

 Score = 48.1 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/49 (44%), Positives = 39/49 (79%)

Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           ID+IV+ +++A+GM M+ P +ISLP K++ FV++ GWS L+++L  S++
Sbjct: 1   IDLIVSNLLLALGMQMVSPMTISLPLKLLLFVMVSGWSRLLDSLFLSYL 49


>gi|51587298|emb|CAE53678.1| putative HrcR protein [Pseudomonas fluorescens bv. V]
          Length = 48

 Score = 48.1 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 38/48 (79%)

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           D+IV+ +++A+GM M+ P +ISLP K++ FV++ GWS L+++L  S++
Sbjct: 1   DLIVSNLLLALGMQMVSPMTISLPLKLLLFVMVSGWSRLLDSLFLSYL 48


>gi|51587310|emb|CAE53687.1| putative HrcR [Pseudomonas fluorescens bv. III]
 gi|321399613|emb|CBJ44625.1| putative type III secretion system protein HrcR [Pseudomonas sp.
           MTE-25-201]
 gi|321399633|emb|CBJ44640.1| putative type III secretion system protein HcrR [Pseudomonas sp.
           MTE-J5-708]
          Length = 51

 Score = 48.1 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 41/51 (80%)

Query: 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           ++ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GW+ L+++L  S++
Sbjct: 1   IVIDLIVSNLLLALGMQMVAPMTISLPLKLLIFVLVQGWTQLLDSLFYSYL 51


>gi|51587294|emb|CAE53675.1| putative HrcR protein [Pseudomonas fluorescens bv. I]
 gi|321399637|emb|CBJ44643.1| putative type III secretion system protein HcrR [Pseudomonas sp.
           MTR-25-321]
          Length = 50

 Score = 47.7 bits (112), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 40/50 (80%)

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GW+ L+++L  S++
Sbjct: 1   VIDLIVSNLLLALGMQMVAPMTISLPLKLLIFVLVQGWTQLLDSLFYSYL 50


>gi|170690583|ref|ZP_02881750.1| hypothetical protein BgramDRAFT_0559 [Burkholderia graminis
          C4D1M]
 gi|170145018|gb|EDT13179.1| hypothetical protein BgramDRAFT_0559 [Burkholderia graminis
          C4D1M]
          Length = 65

 Score = 47.3 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 22/43 (51%)

Query: 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
             +   +S+ P + ++VT + + ++V  +LR  +G+    P 
Sbjct: 10 LLIVIVAISLVPFVAMVVTSYAKIVVVLGLLRNALGVQQCRPT 52


>gi|51587306|emb|CAE53684.1| putative HrcR [Pseudomonas fluorescens bv. II]
          Length = 49

 Score = 47.3 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/49 (44%), Positives = 39/49 (79%)

Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GW+ L+++L  S++
Sbjct: 1   IDLIVSNLLLALGMQMVAPMTISLPLKLLIFVLVQGWTQLLDSLFYSYL 49


>gi|284810387|gb|ADB95986.1| putative HrcR [Pseudomonas cichorii]
 gi|284810391|gb|ADB95989.1| putative HrcR [Pseudomonas cichorii]
 gi|284810399|gb|ADB95995.1| putative HrcR [Pseudomonas cichorii]
          Length = 40

 Score = 46.5 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 31/40 (77%)

Query: 207 MAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +A+GM M+ P +ISLP K++ FVL+DGW+ L++ L  S++
Sbjct: 1   LALGMQMVAPMTISLPLKILLFVLVDGWTRLLDGLFYSYM 40


>gi|51587254|emb|CAE53645.1| putative HrcR protein [Pseudomonas salomonii]
          Length = 50

 Score = 46.5 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 39/50 (78%)

Query: 197 IIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +ID+IV+ +++A+GM M+ P +ISLP K++  V++ GWS L+++L  S++
Sbjct: 1   VIDLIVSNLLLALGMQMVSPMTISLPLKLLLSVMVSGWSRLLDSLFFSYL 50


>gi|190694824|gb|ACE88959.1| HrcR [Pseudomonas fluorescens]
          Length = 47

 Score = 45.4 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 37/47 (78%)

Query: 200 MIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           +IV+ +++A+GM M+ P +ISLP K++ FV++ GWS L+++L  S++
Sbjct: 1   LIVSNLLLALGMQMVSPMTISLPLKLLLFVMVSGWSRLLDSLFFSYL 47


>gi|226446413|gb|ACO58572.1| HrcR [Pseudomonas fluorescens]
          Length = 46

 Score = 45.4 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 36/46 (78%)

Query: 201 IVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           IV+ +++A+GM M+ P +ISLP K++ FV++ GWS L+++L  S++
Sbjct: 1   IVSNLLLALGMQMVSPMTISLPLKLLLFVMVSGWSRLLDSLFLSYL 46


>gi|270488968|ref|ZP_06206042.1| flagellar biosynthesis protein FliP domain protein [Yersinia pestis
           KIM D27]
 gi|270337472|gb|EFA48249.1| flagellar biosynthesis protein FliP domain protein [Yersinia pestis
           KIM D27]
          Length = 41

 Score = 44.6 bits (104), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/41 (56%), Positives = 35/41 (85%)

Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           ++AMGMMM+ P ++SLPFK++ FVL+DGWSL++  LV S++
Sbjct: 1   MLAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL 41


>gi|9663110|emb|CAC01118.1| FliP flagellar protein, truncated [Helicobacter pylori]
          Length = 51

 Score = 43.1 bits (100), Expect = 0.032,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 28/45 (62%)

Query: 39 IVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPP 83
           +    + T+L +AP L++++T F R I+VFS LRT +G    PP
Sbjct: 4  TLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTALGTQQTPP 48


>gi|130855423|gb|ABO32589.1| SpaP [Sodalis endosymbiont of Craterina melbae]
          Length = 48

 Score = 42.3 bits (98), Expect = 0.055,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 27/35 (77%)

Query: 212 MMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           MM+ P ++S+P K++ FV++DGW+LL + LV  ++
Sbjct: 1   MMMSPITLSVPIKLVLFVVLDGWTLLSQGLVLQYL 35


>gi|51587258|emb|CAE53648.1| putative HrcR protein [Pseudomonas gingeri]
          Length = 53

 Score = 41.9 bits (97), Expect = 0.078,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 43/53 (81%)

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           PF++ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GWS L+++L  S++
Sbjct: 1   PFIVIDLIVSNLLLALGMQMVSPMTISLPLKLLLFVLVQGWSRLLDSLFYSYL 53


>gi|321399625|emb|CBJ44634.1| putative type III secretion system protein HcrR [Pseudomonas sp.
           MTE-48-204]
 gi|321399629|emb|CBJ44637.1| putative type III secretion system protein HcrR [Pseudomonas sp.
           MTE-48-205]
          Length = 53

 Score = 41.9 bits (97), Expect = 0.081,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 43/53 (81%)

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           PF++ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GW+ L+++L  S++
Sbjct: 1   PFIVIDLIVSNLLLALGMQMVSPMTISLPLKLLLFVLVQGWTRLLDSLFYSYL 53


>gi|321399653|emb|CBJ44655.1| putative type III secretion system protein HcrR [Pseudomonas sp.
           MTR-J5-327]
          Length = 52

 Score = 40.7 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 42/52 (80%)

Query: 195 FLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           F++ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GW+ L+++L  S++
Sbjct: 1   FIVIDLIVSNLLLALGMQMVSPMTISLPLKLLLFVLVQGWTRLLDSLFYSYL 52


>gi|331005461|ref|ZP_08328840.1| hypothetical protein IMCC1989_1974 [gamma proteobacterium IMCC1989]
 gi|330420737|gb|EGG95024.1| hypothetical protein IMCC1989_1974 [gamma proteobacterium IMCC1989]
          Length = 39

 Score = 40.7 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/37 (54%), Positives = 31/37 (83%)

Query: 209 MGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
           MGM+M+PP  ISLP K++ F+LIDGW ++ ++L++SF
Sbjct: 1   MGMLMVPPMMISLPIKILMFILIDGWFIVTKSLMESF 37


>gi|51587266|emb|CAE53654.1| putative HrcR [Pseudomonas fluorescens bv. I]
 gi|51587322|emb|CAE53696.1| putative HrcR [Pseudomonas sp. CFBP 11402]
          Length = 53

 Score = 40.4 bits (93), Expect = 0.23,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 43/53 (81%)

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           PF++ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GWS L+++L  S++
Sbjct: 1   PFIVIDLIVSNLLLALGMQMVSPMTISLPLKLLLFVLVSGWSRLLDSLFLSYL 53


>gi|321399836|emb|CBJ44673.1| putative type III secretion system protein HcrR [Pseudomonas sp.
           MTR-J5-721]
          Length = 53

 Score = 40.0 bits (92), Expect = 0.28,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 42/53 (79%)

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           PF++I +IV+ +++A+GM M+ P +ISLP K++ FVL+ GW+ L+++L  S++
Sbjct: 1   PFIVIGLIVSNLLLALGMQMVSPMTISLPLKLLLFVLVQGWTRLLDSLFYSYL 53


>gi|51587246|emb|CAE53639.1| putative HrcR protein [Pseudomonas syringae pv. syringae]
 gi|51587250|emb|CAE53642.1| putative HrcR protein [Pseudomonas syringae pv. phaseolicola]
          Length = 53

 Score = 38.8 bits (89), Expect = 0.63,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 43/53 (81%)

Query: 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           PF++ID+IV+ +++A+GM M+ P ++SLP K++ FVL+ GWS L+++L  S++
Sbjct: 1   PFIVIDLIVSNLLLALGMQMVSPMTLSLPLKLLLFVLVSGWSRLLDSLFYSYM 53


>gi|284810383|gb|ADB95983.1| putative HrcR [Pseudomonas cichorii]
 gi|284810395|gb|ADB95992.1| putative HrcR [Pseudomonas cichorii]
 gi|284810407|gb|ADB96001.1| putative HrcR [Pseudomonas cichorii]
 gi|284810411|gb|ADB96004.1| putative HrcR [Pseudomonas cichorii]
 gi|284810415|gb|ADB96007.1| putative HrcR [Pseudomonas cichorii]
          Length = 30

 Score = 38.8 bits (89), Expect = 0.64,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 23/30 (76%)

Query: 217 TSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
            +ISLP K++ FVL+DGW+ L++ L  S++
Sbjct: 1   MTISLPLKILLFVLVDGWTRLLDGLFYSYM 30


>gi|22854670|gb|AAN09754.1| invasion protein [primary endosymbiont of Sitophilus zeamais]
          Length = 40

 Score = 38.4 bits (88), Expect = 0.95,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 21/27 (77%)

Query: 220 SLPFKVIFFVLIDGWSLLVENLVKSFI 246
           S+P K++ FV++DGW+LL + LV  ++
Sbjct: 1   SVPIKLVLFVVLDGWTLLSQGLVLQYL 27


>gi|51587270|emb|CAE53657.1| putative HrcR [Pseudomonas fluorescens]
          Length = 49

 Score = 37.3 bits (85), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/49 (46%), Positives = 39/49 (79%)

Query: 198 IDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           ID+IV+ +++A+GM M+ P +ISLP K++ FVL+ GWS L+++L  S++
Sbjct: 1   IDLIVSNLLLALGMQMVSPMTISLPLKLLLFVLVSGWSRLLDSLFLSYL 49


>gi|270491106|ref|ZP_06208178.1| conserved domain protein [Yersinia pestis KIM D27]
 gi|270334849|gb|EFA45628.1| conserved domain protein [Yersinia pestis KIM D27]
          Length = 57

 Score = 37.3 bits (85), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 29/45 (64%)

Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
          +    + ++L++ P++ +M T F +F +VFS+LR  +G+  +PP 
Sbjct: 8  INLIIVLSLLTLLPLISVMATSFVKFAVVFSLLRNALGVQQIPPT 52


>gi|300854222|ref|YP_003779206.1| bifunctional flagellar biosynthesis proteins FliR/FlhB [Clostridium
           ljungdahlii DSM 13528]
 gi|300434337|gb|ADK14104.1| fusion of flagellar biosynthesis proteins FliR and FlhB
           [Clostridium ljungdahlii DSM 13528]
          Length = 606

 Score = 36.9 bits (84), Expect = 2.7,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 12/107 (11%)

Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMG 210
           MA+      D      I+  +      ++E+     +GFL  L F ++ +    + M MG
Sbjct: 44  MAYILMPGIDYASISSIDNTMFFVMNCLNEVAAGLTLGFLTSLCFSMVRIAGNLMDMQMG 103

Query: 211 MMMLP---PTSISLP---------FKVIFFVLIDGWSLLVENLVKSF 245
             M+    PTS S           F ++ F ++DG  +L+++L++SF
Sbjct: 104 FAMVSMFDPTSNSNTTLIERLLYWFSLVIFFIVDGHHMLIKSLIQSF 150


>gi|51587302|emb|CAE53681.1| putative HrcR protein [Pseudomonas fluorescens]
          Length = 48

 Score = 36.5 bits (83), Expect = 3.2,   Method: Composition-based stats.
 Identities = 22/48 (45%), Positives = 38/48 (79%)

Query: 199 DMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246
           D+IV+ +++A+GM M+ P +ISLP K++ FVL+ GWS L+++L  S++
Sbjct: 1   DLIVSNLLLALGMQMVSPMTISLPLKLLLFVLVTGWSRLLDSLFLSYL 48


>gi|254519406|ref|ZP_05131462.1| flagellar biosynthetic protein FlhB [Clostridium sp. 7_2_43FAA]
 gi|226913155|gb|EEH98356.1| flagellar biosynthetic protein FlhB [Clostridium sp. 7_2_43FAA]
          Length = 614

 Score = 35.7 bits (81), Expect = 6.0,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 12/83 (14%)

Query: 176 FMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMML--------PPTSISLPF---- 223
           +MISE+     +G +  + F ++ M  + I + +G+ M+          T+IS       
Sbjct: 69  YMISEVTTGLVLGLISNIAFEVVLMAGSLIDVHIGLSMVNTIDPNSKTSTTISGNLLHYV 128

Query: 224 KVIFFVLIDGWSLLVENLVKSFI 246
            ++ F ++DG  +L+++L++SFI
Sbjct: 129 ALMIFFVVDGHHMLIKSLIESFI 151


>gi|192292069|ref|YP_001992674.1| TonB-dependent heme/hemoglobin receptor family protein
           [Rhodopseudomonas palustris TIE-1]
 gi|192285818|gb|ACF02199.1| TonB-dependent heme/hemoglobin receptor family protein
           [Rhodopseudomonas palustris TIE-1]
          Length = 1186

 Score = 35.3 bits (80), Expect = 7.9,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 51/138 (36%), Gaps = 3/138 (2%)

Query: 83  PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142
            N  +  L +  TF   + T+++S     QP      +    +   A+P    +   +R+
Sbjct: 10  SNGRLAVLLMAATFLSTAATVEQSYAQAPQPSRAGAGSRE--LDIQAQPLGSALIAFSRQ 67

Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202
             L +F+D A  + ++    +        L      S L   F+ G  + +   +    +
Sbjct: 68  SRLQIFVDQALVAGKSAPAVRGALTPSAALDRLLAGSGLSYRFKRGGTVTIVGPV-SASM 126

Query: 203 ATIVMAMGMMMLPPTSIS 220
             +  + G +ML    IS
Sbjct: 127 NQMPASDGSLMLDTIDIS 144


>gi|83949637|ref|ZP_00958370.1| probable DctP (periplasmic C4-dicarboxylate binding protein)
           [Roseovarius nubinhibens ISM]
 gi|83837536|gb|EAP76832.1| probable DctP (periplasmic C4-dicarboxylate binding protein)
           [Roseovarius nubinhibens ISM]
          Length = 321

 Score = 35.3 bits (80), Expect = 8.3,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 40/119 (33%), Gaps = 8/119 (6%)

Query: 71  ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAE 130
              + +G  +     V +  A+ M         DR +++   P + N   E  AI     
Sbjct: 52  FPASALGDYTTVQERVSVG-AIDMATQPAGAGADRRMQISSFPYLANTWDEARAIYGPDG 110

Query: 131 PFWVFMRNNTREKDLSL-------FMDMAHSSHRNTDITKNDHIEYRILIPSFMISELR 182
           P    M    + +D+++       F  ++ ++        +     ++ +P     +L 
Sbjct: 111 PVRNVMAELYQAQDITMLAAYPVYFGGISLNTEAVHPGDPSQKNGIKVRVPGIKSFQLT 169


>gi|39936343|ref|NP_948619.1| heme receptor [Rhodopseudomonas palustris CGA009]
 gi|39650198|emb|CAE28721.1| possible heme receptor [Rhodopseudomonas palustris CGA009]
          Length = 1191

 Score = 35.0 bits (79), Expect = 9.0,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 51/138 (36%), Gaps = 3/138 (2%)

Query: 83  PNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTRE 142
            N  +  L +  TF   + T+++S     QP      +    +   A+P    +   +R+
Sbjct: 15  SNGRLAVLLMAATFLSTAATVEQSYAQAPQPSRAGASSRE--LDIQAQPLGSALIAFSRQ 72

Query: 143 KDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202
             L +F+D A  + ++    +        L      S L   F+ G  + +   +    +
Sbjct: 73  SRLQIFVDQALVAGKSAPAVRGALTPSAALDRLLAGSGLSYRFKRGGTVTIVGPV-SASM 131

Query: 203 ATIVMAMGMMMLPPTSIS 220
             +  + G +ML    IS
Sbjct: 132 NQMPASDGSLMLDTIDIS 149


>gi|330947078|gb|EGH47860.1| flagellar biosynthesis protein FliP [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 28

 Score = 35.0 bits (79), Expect = 9.5,   Method: Composition-based stats.
 Identities = 14/25 (56%), Positives = 20/25 (80%)

Query: 221 LPFKVIFFVLIDGWSLLVENLVKSF 245
           +PFK++ FVL+DGW+L+V  L  SF
Sbjct: 1   MPFKIMLFVLVDGWALIVGTLAGSF 25


>gi|114145447|ref|NP_001041460.1| zinc finger protein 40 [Ciona intestinalis]
 gi|93002990|tpd|FAA00078.1| TPA: zinc finger protein [Ciona intestinalis]
          Length = 1382

 Score = 35.0 bits (79), Expect = 9.7,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 34/81 (41%), Gaps = 5/81 (6%)

Query: 69  FSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMG---IQPLMNNQITETTAI 125
            S +R  +G+ +   N  +I+ A  +T ++ +PT +   E+      P    + T     
Sbjct: 207 LSTVRQCVGIATSLRN--LIARACSLTVFISNPTPEHYFEVAKIHKTPYNKEKDTSIDCT 264

Query: 126 QRVAEPFWVFMRNNTREKDLS 146
            ++      +++ N   K L+
Sbjct: 265 AQLRFELLEYLKRNWPSKFLT 285


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.320    0.141    0.395 

Lambda     K      H
   0.267   0.0430    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,365,233,336
Number of Sequences: 14124377
Number of extensions: 171164755
Number of successful extensions: 1197574
Number of sequences better than 10.0: 2167
Number of HSP's better than 10.0 without gapping: 3136
Number of HSP's successfully gapped in prelim test: 597
Number of HSP's that attempted gapping in prelim test: 1188632
Number of HSP's gapped (non-prelim): 4294
length of query: 246
length of database: 4,842,793,630
effective HSP length: 135
effective length of query: 111
effective length of database: 2,936,002,735
effective search space: 325896303585
effective search space used: 325896303585
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.8 bits)
S2: 79 (35.0 bits)